diff options
1265 files changed, 24147 insertions, 21602 deletions
diff --git a/.git-blame-ignore-revs b/.git-blame-ignore-revs index 4a581f9dcea..c4496ccce0e 100644 --- a/.git-blame-ignore-revs +++ b/.git-blame-ignore-revs @@ -13,7 +13,7 @@ # To not have to set the option in every repository it is needed in, # save the following script in your path with the name "git-bblame" # now you can run -# $ git bblame $FILE +# $ git blame $FILE # to use the .git-blame-ignore-revs file if it is present. # # #!/usr/bin/env bash diff --git a/doc/contributing/submitting-changes.chapter.md b/doc/contributing/submitting-changes.chapter.md index d428f00eea5..6f87e015b9c 100644 --- a/doc/contributing/submitting-changes.chapter.md +++ b/doc/contributing/submitting-changes.chapter.md @@ -236,7 +236,7 @@ The `master` branch is the main development branch. It should only see non-break ### Staging branch {#submitting-changes-staging-branch} -The `staging` branch is a development branch where mass-rebuilds go. It should only see non-breaking mass-rebuild commits. That means it is not to be used for testing, and changes must have been well tested already. If the branch is already in a broken state, please refrain from adding extra new breakages. +The `staging` branch is a development branch where mass-rebuilds go. Mass rebuilds are commits that cause rebuilds for many packages, like more than 500 (or perhaps, if it's 'light' packages, 1000). It should only see non-breaking mass-rebuild commits. That means it is not to be used for testing, and changes must have been well tested already. If the branch is already in a broken state, please refrain from adding extra new breakages. ### Staging-next branch {#submitting-changes-staging-next-branch} diff --git a/doc/doc-support/default.nix b/doc/doc-support/default.nix index 53990b67719..7c00195ab39 100644 --- a/doc/doc-support/default.nix +++ b/doc/doc-support/default.nix @@ -23,6 +23,14 @@ let <xsl:import href="${./parameters.xml}"/> </xsl:stylesheet> ''; + + # NB: This file describes the Nixpkgs manual, which happens to use module + # docs infra originally developed for NixOS. + optionsDoc = pkgs.nixosOptionsDoc { + inherit (pkgs.lib.evalModules { modules = [ ../../pkgs/top-level/config.nix ]; }) options; + documentType = "none"; + }; + in pkgs.runCommand "doc-support" {} '' mkdir result @@ -30,6 +38,7 @@ in pkgs.runCommand "doc-support" {} cd result ln -s ${locationsXml} ./function-locations.xml ln -s ${functionDocs} ./function-docs + ln -s ${optionsDoc.optionsDocBook} ./config-options.docbook.xml ln -s ${pkgs.docbook5}/xml/rng/docbook/docbook.rng ./docbook.rng ln -s ${pkgs.docbook_xsl_ns}/xml/xsl ./xsl diff --git a/doc/languages-frameworks/javascript.section.md b/doc/languages-frameworks/javascript.section.md index 81731780492..19e31ea6902 100644 --- a/doc/languages-frameworks/javascript.section.md +++ b/doc/languages-frameworks/javascript.section.md @@ -8,19 +8,16 @@ The various tools available will be listed in the [tools-overview](#javascript-t ## Getting unstuck / finding code examples -If you find you are lacking inspiration for packing javascript applications, the links below might prove useful. -Searching online for prior art can be helpful if you are running into solved problems. +If you find you are lacking inspiration for packing javascript applications, the links below might prove useful. Searching online for prior art can be helpful if you are running into solved problems. ### Github - Searching Nix files for `mkYarnPackage`: <https://github.com/search?q=mkYarnPackage+language%3ANix&type=code> - - Searching just `flake.nix` files for `mkYarnPackage`: <https://github.com/search?q=mkYarnPackage+filename%3Aflake.nix&type=code> ### Gitlab - Searching Nix files for `mkYarnPackage`: <https://gitlab.com/search?scope=blobs&search=mkYarnPackage+extension%3Anix> - - Searching just `flake.nix` files for `mkYarnPackage`: <https://gitlab.com/search?scope=blobs&search=mkYarnPackage+filename%3Aflake.nix> ## Tools overview {#javascript-tools-overview} @@ -35,109 +32,107 @@ It is often not documented which node version is used upstream, but if it is, tr This can be a problem if upstream is using the latest and greatest and you are trying to use an earlier version of node. Some cryptic errors regarding V8 may appear. -An exception to this: - ### Try to respect the package manager originally used by upstream (and use the upstream lock file) {#javascript-upstream-package-manager} A lock file (package-lock.json, yarn.lock...) is supposed to make reproducible installations of node_modules for each tool. Guidelines of package managers, recommend to commit those lock files to the repos. If a particular lock file is present, it is a strong indication of which package manager is used upstream. -It's better to try to use a nix tool that understand the lock file. Using a different tool might give you hard to understand error because different packages have been installed. An example of problems that could arise can be found [here](https://github.com/NixOS/nixpkgs/pull/126629). Upstream uses npm, but this is an attempt to package it with yarn2nix (that uses yarn.lock) +It's better to try to use a Nix tool that understand the lock file. Using a different tool might give you hard to understand error because different packages have been installed. An example of problems that could arise can be found [here](https://github.com/NixOS/nixpkgs/pull/126629). Upstream use NPM, but this is an attempt to package it with `yarn2nix` (that uses yarn.lock). Using a different tool forces to commit a lock file to the repository. Those files are fairly large, so when packaging for nixpkgs, this approach does not scale well. Exceptions to this rule are: -- when you encounter one of the bugs from a nix tool. In each of the tool specific instructions, known problems will be detailed. If you have a problem with a particular tool, then it's best to try another tool, even if this means you will have to recreate a lock file and commit it to nixpkgs. In general yarn2nix has less known problems and so a simple search in nixpkgs will reveal many yarn.lock files committed -- Some lock files contain particular version of a package that has been pulled off npm for some reason. In that case, you can recreate upstream lock (by removing the original and `npm install`, `yarn`, ...) and commit this to nixpkgs. -- The only tool that supports workspaces (a feature of npm that helps manage sub-directories with different package.json from a single top level package.json) is yarn2nix. If upstream has workspaces you should try yarn2nix. +- When you encounter one of the bugs from a Nix tool. In each of the tool specific instructions, known problems will be detailed. If you have a problem with a particular tool, then it's best to try another tool, even if this means you will have to recreate a lock file and commit it to nixpkgs. In general `yarn2nix` has less known problems and so a simple search in nixpkgs will reveal many yarn.lock files committed. +- Some lock files contain particular version of a package that has been pulled off NPM for some reason. In that case, you can recreate upstream lock (by removing the original and `npm install`, `yarn`, ...) and commit this to nixpkgs. +- The only tool that supports workspaces (a feature of NPM that helps manage sub-directories with different package.json from a single top level package.json) is `yarn2nix`. If upstream has workspaces you should try `yarn2nix`. ### Try to use upstream package.json {#javascript-upstream-package-json} -Exceptions to this rule are +Exceptions to this rule are: -- Sometimes the upstream repo assumes some dependencies be installed globally. In that case you can add them manually to the upstream package.json (`yarn add xxx` or `npm install xxx`, ...). Dependencies that are installed locally can be executed with `npx` for cli tools. (e.g. `npx postcss ...`, this is how you can call those dependencies in the phases). -- Sometimes there is a version conflict between some dependency requirements. In that case you can fix a version (by removing the `^`). -- Sometimes the script defined in the package.json does not work as is. Some scripts for example use cli tools that might not be available, or cd in directory with a different package.json (for workspaces notably). In that case, it's perfectly fine to look at what the particular script is doing and break this down in the phases. In the build script you can see `build:*` calling in turns several other build scripts like `build:ui` or `build:server`. If one of those fails, you can try to separate those into: +- Sometimes the upstream repo assumes some dependencies be installed globally. In that case you can add them manually to the upstream package.json (`yarn add xxx` or `npm install xxx`, ...). Dependencies that are installed locally can be executed with `npx` for CLI tools. (e.g. `npx postcss ...`, this is how you can call those dependencies in the phases). +- Sometimes there is a version conflict between some dependency requirements. In that case you can fix a version by removing the `^`. +- Sometimes the script defined in the package.json does not work as is. Some scripts for example use CLI tools that might not be available, or cd in directory with a different package.json (for workspaces notably). In that case, it's perfectly fine to look at what the particular script is doing and break this down in the phases. In the build script you can see `build:*` calling in turns several other build scripts like `build:ui` or `build:server`. If one of those fails, you can try to separate those into, -```Shell -yarn build:ui -yarn build:server -# OR -npm run build:ui -npm run build:server -``` + ```sh + yarn build:ui + yarn build:server + # OR + npm run build:ui + npm run build:server + ``` -when you need to override a package.json. It's nice to use the one from the upstream src and do some explicit override. Here is an example. + when you need to override a package.json. It's nice to use the one from the upstream source and do some explicit override. Here is an example: -```nix -patchedPackageJSON = final.runCommand "package.json" { } '' - ${jq}/bin/jq '.version = "0.4.0" | - .devDependencies."@jsdoc/cli" = "^0.2.5" - ${sonar-src}/package.json > $out -''; -``` + ```nix + patchedPackageJSON = final.runCommand "package.json" { } '' + ${jq}/bin/jq '.version = "0.4.0" | + .devDependencies."@jsdoc/cli" = "^0.2.5" + ${sonar-src}/package.json > $out + ''; + ``` -you will still need to commit the modified version of the lock files, but at least the overrides are explicit for everyone to see. + You will still need to commit the modified version of the lock files, but at least the overrides are explicit for everyone to see. ### Using node_modules directly {#javascript-using-node_modules} -each tool has an abstraction to just build the node_modules (dependencies) directory. you can always use the stdenv.mkDerivation with the node_modules to build the package (symlink the node_modules directory and then use the package build command). the node_modules abstraction can be also used to build some web framework frontends. For an example of this see how [plausible](https://github.com/NixOS/nixpkgs/blob/master/pkgs/servers/web-apps/plausible/default.nix) is built. mkYarnModules to make the derivation containing node_modules. Then when building the frontend you can just symlink the node_modules directory +Each tool has an abstraction to just build the node_modules (dependencies) directory. You can always use the `stdenv.mkDerivation` with the node_modules to build the package (symlink the node_modules directory and then use the package build command). The node_modules abstraction can be also used to build some web framework frontends. For an example of this see how [plausible](https://github.com/NixOS/nixpkgs/blob/master/pkgs/servers/web-apps/plausible/default.nix) is built. `mkYarnModules` to make the derivation containing node_modules. Then when building the frontend you can just symlink the node_modules directory. ## Javascript packages inside nixpkgs {#javascript-packages-nixpkgs} -The `pkgs/development/node-packages` folder contains a generated collection of -[NPM packages](https://npmjs.com/) that can be installed with the Nix package -manager. +The [pkgs/development/node-packages](https://github.com/NixOS/nixpkgs/blob/master/pkgs/development/node-packages) folder contains a generated collection of [NPM packages](https://npmjs.com/) that can be installed with the Nix package manager. -As a rule of thumb, the package set should only provide _end user_ software -packages, such as command-line utilities. Libraries should only be added to the -package set if there is a non-NPM package that requires it. +As a rule of thumb, the package set should only provide _end user_ software packages, such as command-line utilities. Libraries should only be added to the package set if there is a non-NPM package that requires it. -When it is desired to use NPM libraries in a development project, use the -`node2nix` generator directly on the `package.json` configuration file of the -project. +When it is desired to use NPM libraries in a development project, use the `node2nix` generator directly on the `package.json` configuration file of the project. -The package set provides support for the official stable Node.js versions. -The latest stable LTS release in `nodePackages`, as well as the latest stable -Current release in `nodePackages_latest`. +The package set provides support for the official stable Node.js versions. The latest stable LTS release in `nodePackages`, as well as the latest stable current release in `nodePackages_latest`. -If your package uses native addons, you need to examine what kind of native -build system it uses. Here are some examples: +If your package uses native addons, you need to examine what kind of native build system it uses. Here are some examples: - `node-gyp` - `node-gyp-builder` - `node-pre-gyp` -After you have identified the correct system, you need to override your package -expression while adding in build system as a build input. For example, `dat` -requires `node-gyp-build`, so [we override](https://github.com/NixOS/nixpkgs/blob/32f5e5da4a1b3f0595527f5195ac3a91451e9b56/pkgs/development/node-packages/default.nix#L37-L40) its expression in [`default.nix`](https://github.com/NixOS/nixpkgs/blob/master/pkgs/development/node-packages/default.nix): +After you have identified the correct system, you need to override your package expression while adding in build system as a build input. For example, `dat` requires `node-gyp-build`, so we override its expression in [pkgs/development/node-packages/overrides.nix](https://github.com/NixOS/nixpkgs/blob/master/pkgs/development/node-packages/overrides.nix): ```nix - dat = super.dat.override { - buildInputs = [ self.node-gyp-build pkgs.libtool pkgs.autoconf pkgs.automake ]; - meta.broken = since "12"; - }; + dat = prev.dat.override (oldAttrs: { + buildInputs = [ final.node-gyp-build pkgs.libtool pkgs.autoconf pkgs.automake ]; + meta = oldAttrs.meta // { broken = since "12"; }; + }); ``` ### Adding and Updating Javascript packages in nixpkgs To add a package from NPM to nixpkgs: -1. Modify `pkgs/development/node-packages/node-packages.json` to add, update - or remove package entries to have it included in `nodePackages` and - `nodePackages_latest`. -2. Run the script: `./pkgs/development/node-packages/generate.sh`. +1. Modify [pkgs/development/node-packages/node-packages.json](https://github.com/NixOS/nixpkgs/blob/master/pkgs/development/node-packages/node-packages.json) to add, update or remove package entries to have it included in `nodePackages` and `nodePackages_latest`. +2. Run the script: + + ```sh + ./pkgs/development/node-packages/generate.sh + ``` + 3. Build your new package to test your changes: - `cd /path/to/nixpkgs && nix-build -A nodePackages.<new-or-updated-package>`. - To build against the latest stable Current Node.js version (e.g. 14.x): - `nix-build -A nodePackages_latest.<new-or-updated-package>` -4. Add and commit all modified and generated files. -For more information about the generation process, consult the -[README.md](https://github.com/svanderburg/node2nix) file of the `node2nix` -tool. + ```sh + nix-build -A nodePackages.<new-or-updated-package> + ``` + + To build against the latest stable Current Node.js version (e.g. 18.x): + + ```sh + nix-build -A nodePackages_latest.<new-or-updated-package> + ``` + + If the package doesn't build, you may need to add an override as explained above. +4. If the package's name doesn't match any of the executables it provides, add an entry in [pkgs/development/node-packages/main-programs.nix](https://github.com/NixOS/nixpkgs/blob/master/pkgs/development/node-packages/main-programs.nix). This will be the case for all scoped packages, e.g., `@angular/cli`. +5. Add and commit all modified and generated files. + +For more information about the generation process, consult the [README.md](https://github.com/svanderburg/node2nix) file of the `node2nix` tool. To update NPM packages in nixpkgs, run the same `generate.sh` script: @@ -148,10 +143,11 @@ To update NPM packages in nixpkgs, run the same `generate.sh` script: #### Git protocol error Some packages may have Git dependencies from GitHub specified with `git://`. -GitHub has -[disabled unecrypted Git connections](https://github.blog/2021-09-01-improving-git-protocol-security-github/#no-more-unauthenticated-git), -so you may see the following error when running the generate script: -`The unauthenticated git protocol on port 9418 is no longer supported`. +GitHub has [disabled unecrypted Git connections](https://github.blog/2021-09-01-improving-git-protocol-security-github/#no-more-unauthenticated-git), so you may see the following error when running the generate script: + +``` +The unauthenticated git protocol on port 9418 is no longer supported +``` Use the following Git configuration to resolve the issue: @@ -165,34 +161,33 @@ git config --global url."https://github.com/".insteadOf git://github.com/ #### Preparation {#javascript-node2nix-preparation} -you will need to generate a nix expression for the dependencies +You will need to generate a Nix expression for the dependencies. Don't forget the `-l package-lock.json` if there is a lock file. Most probably you will need the `--development` to include the `devDependencies` -- don't forget the `-l package-lock.json` if there is a lock file -- Most probably you will need the `--development` to include the `devDependencies` - -so the command will most likely be -`node2nix --development -l package-lock.json` +So the command will most likely be: +```sh +node2nix --development -l package-lock.json +``` -[link to the doc in the repo](https://github.com/svanderburg/node2nix) +See `node2nix` [docs](https://github.com/svanderburg/node2nix) for more info. #### Pitfalls {#javascript-node2nix-pitfalls} -- if upstream package.json does not have a "version" attribute, node2nix will crash. You will need to add it like shown in [the package.json section](#javascript-upstream-package-json) -- node2nix has some [bugs](https://github.com/svanderburg/node2nix/issues/238). related to working with lock files from npm distributed with nodejs-16_x -- node2nix does not like missing packages from npm. If you see something like `Cannot resolve version: vue-loader-v16@undefined` then you might want to try another tool. The package might have been pulled off of npm. +- If upstream package.json does not have a "version" attribute, `node2nix` will crash. You will need to add it like shown in [the package.json section](#javascript-upstream-package-json). +- `node2nix` has some [bugs](https://github.com/svanderburg/node2nix/issues/238) related to working with lock files from NPM distributed with `nodejs-16_x`. +- `node2nix` does not like missing packages from NPM. If you see something like `Cannot resolve version: vue-loader-v16@undefined` then you might want to try another tool. The package might have been pulled off of NPM. ### yarn2nix {#javascript-yarn2nix} #### Preparation {#javascript-yarn2nix-preparation} -you will need at least a yarn.lock and yarn.nix file +You will need at least a yarn.lock and yarn.nix file. -- generate a yarn.lock in upstream if it is not already there -- `yarn2nix > yarn.nix` will generate the dependencies in a nix format +- Generate a yarn.lock in upstream if it is not already there. +- `yarn2nix > yarn.nix` will generate the dependencies in a Nix format. #### mkYarnPackage {#javascript-yarn2nix-mkYarnPackage} -this will by default try to generate a binary. For package only generating static assets (Svelte, Vue, React...), you will need to explicitly override the build step with your instructions. It's important to use the `--offline` flag. For example if you script is `"build": "something"` in package.json use +This will by default try to generate a binary. For package only generating static assets (Svelte, Vue, React...), you will need to explicitly override the build step with your instructions. It's important to use the `--offline` flag. For example if you script is `"build": "something"` in package.json use: ```nix buildPhase = '' @@ -200,14 +195,13 @@ buildPhase = '' ''; ``` -The dist phase is also trying to build a binary, the only way to override it is with +The dist phase is also trying to build a binary, the only way to override it is with: ```nix distPhase = "true"; ``` -the configure phase can sometimes fail because it tries to be too clever. -One common override is +The configure phase can sometimes fail because it tries to be too clever. One common override is: ```nix configurePhase = "ln -s $node_modules node_modules"; @@ -215,13 +209,17 @@ configurePhase = "ln -s $node_modules node_modules"; #### mkYarnModules {#javascript-yarn2nix-mkYarnModules} -this will generate a derivation including the node_modules. If you have to build a derivation for an integrated web framework (rails, phoenix..), this is probably the easiest way. [Plausible](https://github.com/NixOS/nixpkgs/blob/master/pkgs/servers/web-apps/plausible/default.nix#L39) offers a good example of how to do this. +This will generate a derivation including the node_modules. If you have to build a derivation for an integrated web framework (rails, phoenix..), this is probably the easiest way. [Plausible](https://github.com/NixOS/nixpkgs/blob/master/pkgs/servers/web-apps/plausible/default.nix#L39) offers a good example of how to do this. #### Overriding dependency behavior In the `mkYarnPackage` record the property `pkgConfig` can be used to override packages when you encounter problems building. -For instance, say your package is throwing errors when trying to invoke node-sass: `ENOENT: no such file or directory, scandir '/build/source/node_modules/node-sass/vendor'` +For instance, say your package is throwing errors when trying to invoke node-sass: + +``` +ENOENT: no such file or directory, scandir '/build/source/node_modules/node-sass/vendor' +``` To fix this we will specify different versions of build inputs to use, as well as some post install steps to get the software built the way we want: @@ -241,9 +239,8 @@ mkYarnPackage rec { #### Pitfalls {#javascript-yarn2nix-pitfalls} -- if version is missing from upstream package.json, yarn will silently install nothing. In that case, you will need to override package.json as shown in the [package.json section](#javascript-upstream-package-json) - -- having trouble with node-gyp? Try adding these lines to the `yarnPreBuild` steps: +- If version is missing from upstream package.json, yarn will silently install nothing. In that case, you will need to override package.json as shown in the [package.json section](#javascript-upstream-package-json) +- Having trouble with `node-gyp`? Try adding these lines to the `yarnPreBuild` steps: ```nix yarnPreBuild = '' @@ -259,20 +256,20 @@ mkYarnPackage rec { ## Outside of nixpkgs {#javascript-outside-nixpkgs} -There are some other options available that can't be used inside nixpkgs. Those other options are written in nix. Importing them in nixpkgs will require moving the source code into nixpkgs. Using [Import From Derivation](https://nixos.wiki/wiki/Import_From_Derivation) is not allowed in hydra at present. If you are packaging something outside nixpkgs, those can be considered +There are some other options available that can't be used inside nixpkgs. Those other options are written in Nix. Importing them in nixpkgs will require moving the source code into nixpkgs. Using [Import From Derivation](https://nixos.wiki/wiki/Import_From_Derivation) is not allowed in Hydra at present. If you are packaging something outside nixpkgs, those can be considered ### npmlock2nix {#javascript-npmlock2nix} -[npmlock2nix](https://github.com/nix-community/npmlock2nix) aims at building node_modules without code generation. It hasn't reached v1 yet, the api might be subject to change. +[npmlock2nix](https://github.com/nix-community/npmlock2nix) aims at building node_modules without code generation. It hasn't reached v1 yet, the API might be subject to change. #### Pitfalls {#javascript-npmlock2nix-pitfalls} -- there are some [problems with npm v7](https://github.com/tweag/npmlock2nix/issues/45). +There are some [problems with npm v7](https://github.com/tweag/npmlock2nix/issues/45). ### nix-npm-buildpackage {#javascript-nix-npm-buildpackage} -[nix-npm-buildpackage](https://github.com/serokell/nix-npm-buildpackage) aims at building node_modules without code generation. It hasn't reached v1 yet, the api might change. It supports both package-lock.json and yarn.lock. +[nix-npm-buildpackage](https://github.com/serokell/nix-npm-buildpackage) aims at building node_modules without code generation. It hasn't reached v1 yet, the API might change. It supports both package-lock.json and yarn.lock. #### Pitfalls {#javascript-nix-npm-buildpackage-pitfalls} -- there are some [problems with npm v7](https://github.com/serokell/nix-npm-buildpackage/issues/33). +There are some [problems with npm v7](https://github.com/serokell/nix-npm-buildpackage/issues/33). diff --git a/doc/using/configuration.chapter.md b/doc/using/configuration.chapter.md index 932b24237c0..842450ebf47 100644 --- a/doc/using/configuration.chapter.md +++ b/doc/using/configuration.chapter.md @@ -164,6 +164,14 @@ There are several ways to tweak how Nix handles a package which has been marked Note that `permittedInsecurePackages` is only checked if `allowInsecurePredicate` is not specified. +### `config` Options Reference + +The following attributes can be passed in [`config`](#chap-packageconfig). + +```{=docbook} +<include xmlns="http://www.w3.org/2001/XInclude" href="../doc-support/result/config-options.docbook.xml"/> +``` + ## Modify packages via `packageOverrides` {#sec-modify-via-packageOverrides} You can define a function called `packageOverrides` in your local `~/.config/nixpkgs/config.nix` to override Nix packages. It must be a function that takes pkgs as an argument and returns a modified set of packages. diff --git a/lib/default.nix b/lib/default.nix index 22eb5440c28..e919509e724 100644 --- a/lib/default.nix +++ b/lib/default.nix @@ -11,9 +11,6 @@ let callLibs = file: import file { lib = self; }; in { - # interacting with flakes - flakes = callLibs ./flakes.nix; - # often used, or depending on very little trivial = callLibs ./trivial.nix; fixedPoints = callLibs ./fixed-points.nix; @@ -62,7 +59,6 @@ let # linux kernel configuration kernel = callLibs ./kernel.nix; - inherit (self.flakes) callLocklessFlake; inherit (builtins) add addErrorContext attrNames concatLists deepSeq elem elemAt filter genericClosure genList getAttr hasAttr head isAttrs isBool isInt isList isString length diff --git a/lib/flakes.nix b/lib/flakes.nix deleted file mode 100644 index 4dc027b6c9b..00000000000 --- a/lib/flakes.nix +++ /dev/null @@ -1,22 +0,0 @@ -{ lib }: - -rec { - - /* imports a flake.nix without acknowledging its lock file, useful for - referencing subflakes from a parent flake. The second argument allows - specifying the inputs of this flake. - - Example: - callLocklessFlake { - path = ./directoryContainingFlake; - inputs = { inherit nixpkgs; }; - } - */ - callLocklessFlake = { path, inputs ? { } }: - let - self = { outPath = path; } // - ((import (path + "/flake.nix")).outputs (inputs // { self = self; })); - in - self; - -} diff --git a/lib/tests/flakes/subflakeTest/flake.nix b/lib/tests/flakes/subflakeTest/flake.nix deleted file mode 100644 index 3a8edd5e8c5..00000000000 --- a/lib/tests/flakes/subflakeTest/flake.nix +++ /dev/null @@ -1,8 +0,0 @@ -{ - outputs = { self, subflake, callLocklessFlake }: rec { - x = (callLocklessFlake { - path = subflake; - inputs = {}; - }).subflakeOutput; - }; -} diff --git a/lib/tests/flakes/subflakeTest/subflake/flake.nix b/lib/tests/flakes/subflakeTest/subflake/flake.nix deleted file mode 100644 index 41566b52090..00000000000 --- a/lib/tests/flakes/subflakeTest/subflake/flake.nix +++ /dev/null @@ -1,5 +0,0 @@ -{ - outputs = { self }: { - subflakeOutput = 1; - }; -} diff --git a/lib/tests/misc.nix b/lib/tests/misc.nix index c7010f41394..1154edf1de6 100644 --- a/lib/tests/misc.nix +++ b/lib/tests/misc.nix @@ -22,16 +22,6 @@ in runTests { -# FLAKES - - testCallLocklessFlake = { - expr = callLocklessFlake { - path = ./flakes/subflakeTest; - inputs = { subflake = ./flakes/subflakeTest/subflake; inherit callLocklessFlake; }; - }; - expected = { x = 1; outPath = ./flakes/subflakeTest; }; - }; - # TRIVIAL testId = { diff --git a/lib/tests/modules.sh b/lib/tests/modules.sh index cc13a8d38e3..487fcd93641 100755 --- a/lib/tests/modules.sh +++ b/lib/tests/modules.sh @@ -290,6 +290,8 @@ checkConfigOutput '^"a b"$' config.result ./functionTo/merging-list.nix checkConfigError 'A definition for option .fun.\[function body\]. is not of type .string.. Definition values:\n\s*- In .*wrong-type.nix' config.result ./functionTo/wrong-type.nix checkConfigOutput '^"b a"$' config.result ./functionTo/list-order.nix checkConfigOutput '^"a c"$' config.result ./functionTo/merging-attrs.nix +checkConfigOutput '^"a bee"$' config.result ./functionTo/submodule-options.nix +checkConfigOutput '^"fun.\[function body\].a fun.\[function body\].b"$' config.optionsResult ./functionTo/submodule-options.nix # moduleType checkConfigOutput '^"a b"$' config.resultFoo ./declare-variants.nix ./define-variant.nix @@ -313,7 +315,7 @@ checkConfigOutput "bar" config.priorities ./raw.nix ## Option collision checkConfigError \ - 'The option .set. in module .*/declare-set.nix. would be a parent of the following options, but its type .attribute set of signed integers. does not support nested options.\n\s*- option[(]s[)] with prefix .set.enable. in module .*/declare-enable-nested.nix.' \ + 'The option .set. in module .*/declare-set.nix. would be a parent of the following options, but its type .attribute set of signed integer. does not support nested options.\n\s*- option[(]s[)] with prefix .set.enable. in module .*/declare-enable-nested.nix.' \ config.set \ ./declare-set.nix ./declare-enable-nested.nix diff --git a/lib/tests/modules/functionTo/submodule-options.nix b/lib/tests/modules/functionTo/submodule-options.nix new file mode 100644 index 00000000000..b884892efd6 --- /dev/null +++ b/lib/tests/modules/functionTo/submodule-options.nix @@ -0,0 +1,61 @@ +{ lib, config, options, ... }: +let + inherit (lib) types; +in +{ + imports = [ + + # fun.<function-body>.a + ({ ... }: { + options = { + fun = lib.mkOption { + type = types.functionTo (types.submodule { + options.a = lib.mkOption { default = "a"; }; + }); + }; + }; + }) + + # fun.<function-body>.b + ({ ... }: { + options = { + fun = lib.mkOption { + type = types.functionTo (types.submodule { + options.b = lib.mkOption { default = "b"; }; + }); + }; + }; + }) + ]; + + options = { + result = lib.mkOption + { + type = types.str; + default = lib.concatStringsSep " " (lib.attrValues (config.fun (throw "shouldn't use input param"))); + }; + + optionsResult = lib.mkOption + { + type = types.str; + default = lib.concatStringsSep " " + (lib.concatLists + (lib.mapAttrsToList + (k: v: + if k == "_module" + then [ ] + else [ (lib.showOption v.loc) ] + ) + ( + (options.fun.type.getSubOptions [ "fun" ]) + ) + ) + ); + }; + }; + + config.fun = lib.mkMerge + [ + (input: { b = "bee"; }) + ]; +} diff --git a/lib/types.nix b/lib/types.nix index 91b040d2455..2590d3e8710 100644 --- a/lib/types.nix +++ b/lib/types.nix @@ -397,7 +397,7 @@ rec { listOf = elemType: mkOptionType rec { name = "listOf"; - description = "list of ${elemType.description}s"; + description = "list of ${elemType.description}"; check = isList; merge = loc: defs: map (x: x.value) (filter (x: x ? value) (concatLists (imap1 (n: def: @@ -426,7 +426,7 @@ rec { attrsOf = elemType: mkOptionType rec { name = "attrsOf"; - description = "attribute set of ${elemType.description}s"; + description = "attribute set of ${elemType.description}"; check = isAttrs; merge = loc: defs: mapAttrs (n: v: v.value) (filterAttrs (n: v: v ? value) (zipAttrsWith (name: defs: @@ -449,7 +449,7 @@ rec { # error that it's not defined. Use only if conditional definitions don't make sense. lazyAttrsOf = elemType: mkOptionType rec { name = "lazyAttrsOf"; - description = "lazy attribute set of ${elemType.description}s"; + description = "lazy attribute set of ${elemType.description}"; check = isAttrs; merge = loc: defs: zipAttrsWith (name: defs: @@ -526,9 +526,11 @@ rec { check = isFunction; merge = loc: defs: fnArgs: (mergeDefinitions (loc ++ [ "[function body]" ]) elemType (map (fn: { inherit (fn) file; value = fn.value fnArgs; }) defs)).mergedValue; - getSubOptions = elemType.getSubOptions; + getSubOptions = prefix: elemType.getSubOptions (prefix ++ [ "[function body]" ]); getSubModules = elemType.getSubModules; substSubModules = m: functionTo (elemType.substSubModules m); + functor = (defaultFunctor "functionTo") // { wrapped = elemType; }; + nestedTypes.elemType = elemType; }; # A submodule (like typed attribute set). See NixOS manual. diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix index 68db0e24a77..0083993e7ef 100644 --- a/maintainers/maintainer-list.nix +++ b/maintainers/maintainer-list.nix @@ -1544,6 +1544,12 @@ githubId = 410028; name = "Tobias Bergkvist"; }; + berryp = { + email = "berryphillips@gmail.com"; + github = "berryp"; + githubId = 19911; + name = "Berry Phillips"; + }; betaboon = { email = "betaboon@0x80.ninja"; github = "betaboon"; @@ -1947,6 +1953,12 @@ githubId = 7435854; name = "Victor Calvert"; }; + cameronfyfe = { + email = "cameron.j.fyfe@gmail.com"; + github = "cameronfyfe"; + githubId = 21013281; + name = "Cameron Fyfe"; + }; cameronnemo = { email = "cnemo@tutanota.com"; github = "cameronnemo"; @@ -3650,6 +3662,12 @@ githubId = 103082; name = "Ed Brindley"; }; + elizagamedev = { + email = "eliza@eliza.sh"; + github = "elizagamedev"; + githubId = 4576666; + name = "Eliza Velasquez"; + }; elliot = { email = "hack00mind@gmail.com"; github = "Eliot00"; @@ -6697,13 +6715,13 @@ name = "Jim Fowler"; }; kittywitch = { - email = "kat@kittywit.ch"; + email = "kat@inskip.me"; github = "kittywitch"; githubId = 67870215; - name = "kat witch"; + name = "Kat Inskip"; keys = [{ - longkeyid = "rsa4096/0x7248991EFA8EFBEE"; - fingerprint = "01F5 0A29 D4AA 9117 5A11 BDB1 7248 991E FA8E FBEE"; + longkeyid = "rsa4096/0xE8DDE3ED1C90F3A0"; + fingerprint = "9CC6 44B5 69CD A59B C874 C4C9 E8DD E3ED 1C90 F3A0"; }]; }; kiwi = { @@ -10110,6 +10128,12 @@ githubId = 81340136; name = "polykernel"; }; + poelzi = { + email = "nix@poelzi.org"; + github = "poelzi"; + githubId = 66107; + name = "Daniel Poelzleithner"; + }; polyrod = { email = "dc1mdp@gmail.com"; github = "polyrod"; @@ -12422,6 +12446,16 @@ githubId = 66133083; name = "Tomas Bravo"; }; + tchekda = { + email = "contact@tchekda.fr"; + github = "tchekda"; + githubId = 23559888; + keys = [{ + longkeyid = "rsa4096/0xD0A007EDA4EADA0F"; + fingerprint = "44CE A8DD 3B31 49CD 6246 9D8F D0A0 07ED A4EA DA0F"; + }]; + name = "David Tchekachev"; + }; tckmn = { email = "andy@tck.mn"; github = "tckmn"; @@ -14536,4 +14570,16 @@ github = "bryanhonof"; githubId = 5932804; }; + bbenne10 = { + email = "Bryan.Bennett@protonmail.com"; + matrix = "@bryan.bennett:matrix.org"; + github = "bbenne10"; + githubId = 687376; + name = "Bryan Bennett"; + keys = [{ + # compare with https://keybase.io/bbenne10 + longkeyid = "rsa2048/0xEF90E3E98B8F5C0B"; + fingerprint = "41EA 00B4 00F9 6970 1CB2 D3AF EF90 E3E9 8B8F 5C0B"; + }]; + }; } diff --git a/maintainers/scripts/haskell/hydra-report.hs b/maintainers/scripts/haskell/hydra-report.hs index 6f154d90f06..60b57b97a2b 100755 --- a/maintainers/scripts/haskell/hydra-report.hs +++ b/maintainers/scripts/haskell/hydra-report.hs @@ -1,6 +1,6 @@ #! /usr/bin/env nix-shell #! nix-shell -p "haskellPackages.ghcWithPackages (p: [p.aeson p.req])" -#! nix-shell -p hydra_unstable +#! nix-shell -p hydra-unstable #! nix-shell -i runhaskell {- @@ -20,14 +20,12 @@ Because step 1) is quite expensive and takes roughly ~5 minutes the result is ca {-# LANGUAGE DerivingStrategies #-} {-# LANGUAGE DuplicateRecordFields #-} {-# LANGUAGE LambdaCase #-} -{-# LANGUAGE MultiWayIf #-} {-# LANGUAGE NamedFieldPuns #-} {-# LANGUAGE OverloadedStrings #-} {-# LANGUAGE ScopedTypeVariables #-} {-# LANGUAGE TupleSections #-} -{-# OPTIONS_GHC -Wall #-} {-# LANGUAGE ViewPatterns #-} -{-# LANGUAGE TupleSections #-} +{-# OPTIONS_GHC -Wall #-} import Control.Monad (forM_, (<=<)) import Control.Monad.Trans (MonadIO (liftIO)) diff --git a/nixos/doc/manual/from_md/release-notes/rl-2205.section.xml b/nixos/doc/manual/from_md/release-notes/rl-2205.section.xml index 7f5da547805..aafa9b831b6 100644 --- a/nixos/doc/manual/from_md/release-notes/rl-2205.section.xml +++ b/nixos/doc/manual/from_md/release-notes/rl-2205.section.xml @@ -518,6 +518,15 @@ </listitem> <listitem> <para> + The update of the haskell package set brings with it a new + version of the <literal>xmonad</literal> module, which will + break your configuration if you use <literal>launch</literal> + as entrypoint. The example code the corresponding nixos module + was adjusted, you way want to have a look at it. + </para> + </listitem> + <listitem> + <para> The <literal>home-assistant</literal> module now requires users that don’t want their configuration to be managed declaratively to set @@ -1638,6 +1647,19 @@ </listitem> <listitem> <para> + The default version of <literal>nextcloud</literal> is + <emphasis role="strong">nextcloud24</emphasis>. Please note + that it’s <emphasis role="strong">not</emphasis> possible to + upgrade <literal>nextcloud</literal> across multiple major + versions! This means it’s e.g. not possible to upgrade from + <literal>nextcloud22</literal> to + <literal>nextcloud24</literal> in a single deploy and most + <literal>21.11</literal> users will have to upgrade to + <literal>nextcloud23</literal> first. + </para> + </listitem> + <listitem> + <para> <literal>pkgs.vimPlugins.onedark-nvim</literal> now refers to <link xlink:href="https://github.com/navarasu/onedark.nvim">navarasu/onedark.nvim</link> (formerly refers to @@ -2516,6 +2538,16 @@ cp /var/lib/redis/dump.rdb "/var/lib/redis-mastodon/dump.rdb" </listitem> <listitem> <para> + The Nextcloud module now allows setting the value of the + <literal>max-age</literal> directive of the + <literal>Strict-Transport-Security</literal> HTTP header, + which is now controlled by the + <literal>services.nextcloud.https</literal> option, rather + than <literal>services.nginx.recommendedHttpHeaders</literal>. + </para> + </listitem> + <listitem> + <para> The <literal>spark3</literal> package has been updated from 3.1.2 to 3.2.1 (<link xlink:href="https://github.com/NixOS/nixpkgs/pull/160075">#160075</link>): diff --git a/nixos/doc/manual/release-notes/rl-2205.section.md b/nixos/doc/manual/release-notes/rl-2205.section.md index acead412048..52bcc2e80d9 100644 --- a/nixos/doc/manual/release-notes/rl-2205.section.md +++ b/nixos/doc/manual/release-notes/rl-2205.section.md @@ -163,6 +163,10 @@ In addition to numerous new and upgraded packages, this release has the followin `useLLVM`. So instead of `(ghc.withPackages (p: [])).override { withLLVM = true; }`, one needs to use `(ghc.withPackages.override { useLLVM = true; }) (p: [])`. +- The update of the haskell package set brings with it a new version of the `xmonad` + module, which will break your configuration if you use `launch` as entrypoint. The + example code the corresponding nixos module was adjusted, you way want to have a look at it. + - The `home-assistant` module now requires users that don't want their configuration to be managed declaratively to set `services.home-assistant.config = null;`. This is required @@ -628,6 +632,10 @@ In addition to numerous new and upgraded packages, this release has the followin - The `vpnc` package has been changed to use GnuTLS instead of OpenSSL by default for licensing reasons. +- The default version of `nextcloud` is **nextcloud24**. Please note that it's **not** possible to upgrade + `nextcloud` across multiple major versions! This means it's e.g. not possible to upgrade from `nextcloud22` + to `nextcloud24` in a single deploy and most `21.11` users will have to upgrade to `nextcloud23` first. + - `pkgs.vimPlugins.onedark-nvim` now refers to [navarasu/onedark.nvim](https://github.com/navarasu/onedark.nvim) (formerly refers to [olimorris/onedarkpro.nvim](https://github.com/olimorris/onedarkpro.nvim)). @@ -892,6 +900,8 @@ In addition to numerous new and upgraded packages, this release has the followin - The Nextcloud module now supports to create a Mysql database automatically with `services.nextcloud.database.createLocally` enabled. +- The Nextcloud module now allows setting the value of the `max-age` directive of the `Strict-Transport-Security` HTTP header, which is now controlled by the `services.nextcloud.https` option, rather than `services.nginx.recommendedHttpHeaders`. + - The `spark3` package has been updated from 3.1.2 to 3.2.1 ([#160075](https://github.com/NixOS/nixpkgs/pull/160075)): - Testing has been enabled for `aarch64-linux` in addition to `x86_64-linux`. diff --git a/nixos/lib/make-options-doc/default.nix b/nixos/lib/make-options-doc/default.nix index 57652dd5db1..353fdb87a9f 100644 --- a/nixos/lib/make-options-doc/default.nix +++ b/nixos/lib/make-options-doc/default.nix @@ -20,6 +20,8 @@ , lib , options , transformOptions ? lib.id # function for additional tranformations of the options +, documentType ? "appendix" # TODO deprecate "appendix" in favor of "none" + # and/or rename function to moduleOptionDoc for clean slate , revision ? "" # Specify revision for the options # a set of options the docs we are generating will be merged into, as if by recursiveUpdate. # used to split the options doc build into a static part (nixos/modules) and a dynamic part @@ -161,6 +163,7 @@ in rec { ${pkgs.python3Minimal}/bin/python ${./sortXML.py} $optionsXML sorted.xml ${pkgs.libxslt.bin}/bin/xsltproc \ + --stringparam documentType '${documentType}' \ --stringparam revision '${revision}' \ -o intermediate.xml ${./options-to-docbook.xsl} sorted.xml ${pkgs.libxslt.bin}/bin/xsltproc \ diff --git a/nixos/lib/make-options-doc/options-to-docbook.xsl b/nixos/lib/make-options-doc/options-to-docbook.xsl index b286f7b5e2c..03e14365cda 100644 --- a/nixos/lib/make-options-doc/options-to-docbook.xsl +++ b/nixos/lib/make-options-doc/options-to-docbook.xsl @@ -12,15 +12,34 @@ <xsl:output method='xml' encoding="UTF-8" /> <xsl:param name="revision" /> + <xsl:param name="documentType" /> <xsl:param name="program" /> <xsl:template match="/expr/list"> - <appendix xml:id="appendix-configuration-options"> - <title>Configuration Options</title> + <xsl:choose> + <xsl:when test="$documentType = 'appendix'"> + <appendix xml:id="appendix-configuration-options"> + <title>Configuration Options</title> + <xsl:call-template name="variable-list"/> + </appendix> + </xsl:when> + <xsl:otherwise> + <xsl:call-template name="variable-list"/> + </xsl:otherwise> + </xsl:choose> + </xsl:template> + + <xsl:template name="variable-list"> <variablelist xml:id="configuration-variable-list"> <xsl:for-each select="attrs"> - <xsl:variable name="id" select="concat('opt-', str:replace(str:replace(str:replace(str:replace(attr[@name = 'name']/string/@value, '*', '_'), '<', '_'), '>', '_'), ':', '_'))" /> + <xsl:variable name="id" select=" + concat('opt-', + translate( + attr[@name = 'name']/string/@value, + '*< >[]:', + '_______' + ))" /> <varlistentry> <term xlink:href="#{$id}"> <xsl:attribute name="xml:id"><xsl:value-of select="$id"/></xsl:attribute> @@ -96,7 +115,6 @@ </xsl:for-each> </variablelist> - </appendix> </xsl:template> diff --git a/nixos/maintainers/scripts/ec2/create-amis.sh b/nixos/maintainers/scripts/ec2/create-amis.sh index 797fe03e209..0c1656efaf1 100755 --- a/nixos/maintainers/scripts/ec2/create-amis.sh +++ b/nixos/maintainers/scripts/ec2/create-amis.sh @@ -26,12 +26,32 @@ var ${home_region:=eu-west-1} var ${bucket:=nixos-amis} var ${service_role_name:=vmimport} -var ${regions:=eu-west-1 eu-west-2 eu-west-3 eu-central-1 eu-north-1 - us-east-1 us-east-2 us-west-1 us-west-2 +# Output of the command: +# > aws ec2 describe-regions --all-regions --query "Regions[].{Name:RegionName}" --output text | sort +var ${regions:= + af-south-1 + ap-east-1 + ap-northeast-1 + ap-northeast-2 + ap-northeast-3 + ap-south-1 + ap-southeast-1 + ap-southeast-2 + ap-southeast-3 ca-central-1 - ap-southeast-1 ap-southeast-2 ap-northeast-1 ap-northeast-2 - ap-south-1 ap-east-1 - sa-east-1} + eu-central-1 + eu-north-1 + eu-south-1 + eu-west-1 + eu-west-2 + eu-west-3 + me-south-1 + sa-east-1 + us-east-1 + us-east-2 + us-west-1 + us-west-2 + } regions=($regions) diff --git a/nixos/modules/hardware/all-firmware.nix b/nixos/modules/hardware/all-firmware.nix index da2bc8ffef4..89a1217dfb3 100644 --- a/nixos/modules/hardware/all-firmware.nix +++ b/nixos/modules/hardware/all-firmware.nix @@ -83,7 +83,6 @@ in { broadcom-bt-firmware b43Firmware_5_1_138 b43Firmware_6_30_163_46 - b43FirmwareCutter xow_dongle-firmware ] ++ optionals pkgs.stdenv.hostPlatform.isx86 [ facetimehd-calibration diff --git a/nixos/modules/installer/cd-dvd/installation-cd-graphical-base.nix b/nixos/modules/installer/cd-dvd/installation-cd-graphical-base.nix index 0e4feba2282..8c7bac6f6cc 100644 --- a/nixos/modules/installer/cd-dvd/installation-cd-graphical-base.nix +++ b/nixos/modules/installer/cd-dvd/installation-cd-graphical-base.nix @@ -35,8 +35,15 @@ with lib; # Enable sound in graphical iso's. hardware.pulseaudio.enable = true; - # Spice guest additions + # VM guest additions to improve host-guest interaction services.spice-vdagentd.enable = true; + services.qemuGuest.enable = true; + virtualisation.vmware.guest.enable = true; + virtualisation.hypervGuest.enable = true; + services.xe-guest-utilities.enable = true; + # The VirtualBox guest additions rely on an out-of-tree kernel module + # which lags behind kernel releases, potentially causing broken builds. + virtualisation.virtualbox.guest.enable = false; # Enable plymouth boot.plymouth.enable = true; diff --git a/nixos/modules/installer/tools/nix-fallback-paths.nix b/nixos/modules/installer/tools/nix-fallback-paths.nix index 1707935ad5b..8fc8cc4baad 100644 --- a/nixos/modules/installer/tools/nix-fallback-paths.nix +++ b/nixos/modules/installer/tools/nix-fallback-paths.nix @@ -1,7 +1,7 @@ { - x86_64-linux = "/nix/store/yx36yzxpw1hn4fz8iyf1rfyd56jg3yf4-nix-2.8.0"; - i686-linux = "/nix/store/c0hg806zvwg800qbszzj8ff4a224kjgf-nix-2.8.0"; - aarch64-linux = "/nix/store/wic2832ll53q392r2wks4xr2nrk7p8p5-nix-2.8.0"; - x86_64-darwin = "/nix/store/5yqdvnkmkrhl36xh0qy31pymdphjimdd-nix-2.8.0"; - aarch64-darwin = "/nix/store/izc9592szrnpv8n86hr88bhpyc9g6b4s-nix-2.8.0"; + x86_64-linux = "/nix/store/6mjgljq8sm9bsz6k22as5ar3jw78644m-nix-2.8.1"; + i686-linux = "/nix/store/c4yjv4l8wncdla6ycicvsjrdf40xjkpp-nix-2.8.1"; + aarch64-linux = "/nix/store/qkgvks80mdibq7m86hqasgr5lpixbnmh-nix-2.8.1"; + x86_64-darwin = "/nix/store/riz4mzb1xhp36088ffnp40lz52bpxz01-nix-2.8.1"; + aarch64-darwin = "/nix/store/dirm8hsnmvvzjs21hrx8i84w8k453jzp-nix-2.8.1"; } diff --git a/nixos/modules/misc/locate.nix b/nixos/modules/misc/locate.nix index 192c9ec413c..50495eebe4c 100644 --- a/nixos/modules/misc/locate.nix +++ b/nixos/modules/misc/locate.nix @@ -250,7 +250,7 @@ in }; warnings = optional (isMorPLocate && cfg.localuser != null) - "mlocate does not support the services.locate.localuser option; updatedb will run as root. (Silence with services.locate.localuser = null.)" + "mlocate and plocate do not support the services.locate.localuser option. updatedb will run as root. Silence this warning by setting services.locate.localuser = null." ++ optional (isFindutils && cfg.pruneNames != [ ]) "findutils locate does not support pruning by directory component" ++ optional (isFindutils && cfg.pruneBindMounts) diff --git a/nixos/modules/programs/nix-ld.nix b/nixos/modules/programs/nix-ld.nix index 810a74ab50b..89779cfef39 100644 --- a/nixos/modules/programs/nix-ld.nix +++ b/nixos/modules/programs/nix-ld.nix @@ -5,8 +5,6 @@ programs.nix-ld.enable = lib.mkEnableOption ''nix-ld, Documentation: <link xlink:href="https://github.com/Mic92/nix-ld"/>''; }; config = lib.mkIf config.programs.nix-ld.enable { - systemd.tmpfiles.rules = [ - "L+ ${pkgs.nix-ld.ldPath} - - - - ${pkgs.nix-ld}/libexec/nix-ld" - ]; + systemd.tmpfiles.packages = [ pkgs.nix-ld ]; }; } diff --git a/nixos/modules/security/wrappers/wrapper.c b/nixos/modules/security/wrappers/wrapper.c index 529669facda..a21ec500208 100644 --- a/nixos/modules/security/wrappers/wrapper.c +++ b/nixos/modules/security/wrappers/wrapper.c @@ -2,12 +2,12 @@ #include <stdio.h> #include <string.h> #include <unistd.h> +#include <stdnoreturn.h> #include <sys/types.h> #include <sys/stat.h> #include <sys/xattr.h> #include <fcntl.h> #include <dirent.h> -#include <assert.h> #include <errno.h> #include <linux/capability.h> #include <sys/prctl.h> @@ -16,10 +16,7 @@ #include <syscall.h> #include <byteswap.h> -// Make sure assertions are not compiled out, we use them to codify -// invariants about this program and we want it to fail fast and -// loudly if they are violated. -#undef NDEBUG +#define ASSERT(expr) ((expr) ? (void) 0 : assert_failure(#expr)) extern char **environ; @@ -38,6 +35,12 @@ static char *wrapper_debug = "WRAPPER_DEBUG"; #define LE32_TO_H(x) (x) #endif +static noreturn void assert_failure(const char *assertion) { + fprintf(stderr, "Assertion `%s` in NixOS's wrapper.c failed.\n", assertion); + fflush(stderr); + abort(); +} + int get_last_cap(unsigned *last_cap) { FILE* file = fopen("/proc/sys/kernel/cap_last_cap", "r"); if (file == NULL) { @@ -167,6 +170,7 @@ int readlink_malloc(const char *p, char **ret) { } int main(int argc, char **argv) { + ASSERT(argc >= 1); char *self_path = NULL; int self_path_size = readlink_malloc("/proc/self/exe", &self_path); if (self_path_size < 0) { @@ -181,36 +185,36 @@ int main(int argc, char **argv) { int len = strlen(wrapper_dir); if (len > 0 && '/' == wrapper_dir[len - 1]) --len; - assert(!strncmp(self_path, wrapper_dir, len)); - assert('/' == wrapper_dir[0]); - assert('/' == self_path[len]); + ASSERT(!strncmp(self_path, wrapper_dir, len)); + ASSERT('/' == wrapper_dir[0]); + ASSERT('/' == self_path[len]); // Make *really* *really* sure that we were executed as // `self_path', and not, say, as some other setuid program. That // is, our effective uid/gid should match the uid/gid of // `self_path'. struct stat st; - assert(lstat(self_path, &st) != -1); + ASSERT(lstat(self_path, &st) != -1); - assert(!(st.st_mode & S_ISUID) || (st.st_uid == geteuid())); - assert(!(st.st_mode & S_ISGID) || (st.st_gid == getegid())); + ASSERT(!(st.st_mode & S_ISUID) || (st.st_uid == geteuid())); + ASSERT(!(st.st_mode & S_ISGID) || (st.st_gid == getegid())); // And, of course, we shouldn't be writable. - assert(!(st.st_mode & (S_IWGRP | S_IWOTH))); + ASSERT(!(st.st_mode & (S_IWGRP | S_IWOTH))); // Read the path of the real (wrapped) program from <self>.real. char real_fn[PATH_MAX + 10]; int real_fn_size = snprintf(real_fn, sizeof(real_fn), "%s.real", self_path); - assert(real_fn_size < sizeof(real_fn)); + ASSERT(real_fn_size < sizeof(real_fn)); int fd_self = open(real_fn, O_RDONLY); - assert(fd_self != -1); + ASSERT(fd_self != -1); char source_prog[PATH_MAX]; len = read(fd_self, source_prog, PATH_MAX); - assert(len != -1); - assert(len < sizeof(source_prog)); - assert(len > 0); + ASSERT(len != -1); + ASSERT(len < sizeof(source_prog)); + ASSERT(len > 0); source_prog[len] = 0; close(fd_self); diff --git a/nixos/modules/services/backup/btrbk.nix b/nixos/modules/services/backup/btrbk.nix index 0c00b934405..e17761ffc3c 100644 --- a/nixos/modules/services/backup/btrbk.nix +++ b/nixos/modules/services/backup/btrbk.nix @@ -1,18 +1,36 @@ { config, pkgs, lib, ... }: let + inherit (lib) + concatMapStringsSep + concatStringsSep + filterAttrs + flatten + isAttrs + isString + literalExpression + mapAttrs' + mapAttrsToList + mkIf + mkOption + optionalString + partition + typeOf + types + ; + cfg = config.services.btrbk; sshEnabled = cfg.sshAccess != [ ]; serviceEnabled = cfg.instances != { }; attr2Lines = attr: let - pairs = lib.attrsets.mapAttrsToList (name: value: { inherit name value; }) attr; + pairs = mapAttrsToList (name: value: { inherit name value; }) attr; isSubsection = value: - if builtins.isAttrs value then true - else if builtins.isString value then false - else throw "invalid type in btrbk config ${builtins.typeOf value}"; - sortedPairs = lib.lists.partition (x: isSubsection x.value) pairs; + if isAttrs value then true + else if isString value then false + else throw "invalid type in btrbk config ${typeOf value}"; + sortedPairs = partition (x: isSubsection x.value) pairs; in - lib.flatten ( + flatten ( # non subsections go first ( map (pair: [ "${pair.name} ${pair.value}" ]) sortedPairs.wrong @@ -22,7 +40,7 @@ let map ( pair: - lib.mapAttrsToList + mapAttrsToList ( childname: value: [ "${pair.name} ${childname}" ] ++ (map (x: " " + x) (attr2Lines value)) @@ -34,7 +52,7 @@ let ) ; addDefaults = settings: { backend = "btrfs-progs-sudo"; } // settings; - mkConfigFile = settings: lib.concatStringsSep "\n" (attr2Lines (addDefaults settings)); + mkConfigFile = settings: concatStringsSep "\n" (attr2Lines (addDefaults settings)); mkTestedConfigFile = name: settings: let configFile = pkgs.writeText "btrbk-${name}.conf" (mkConfigFile settings); @@ -51,37 +69,42 @@ let ''; in { + meta.maintainers = with lib.maintainers; [ oxalica ]; + options = { services.btrbk = { - extraPackages = lib.mkOption { + extraPackages = mkOption { description = "Extra packages for btrbk, like compression utilities for <literal>stream_compress</literal>"; - type = lib.types.listOf lib.types.package; + type = types.listOf types.package; default = [ ]; - example = lib.literalExpression "[ pkgs.xz ]"; + example = literalExpression "[ pkgs.xz ]"; }; - niceness = lib.mkOption { + niceness = mkOption { description = "Niceness for local instances of btrbk. Also applies to remote ones connecting via ssh when positive."; - type = lib.types.ints.between (-20) 19; + type = types.ints.between (-20) 19; default = 10; }; - ioSchedulingClass = lib.mkOption { + ioSchedulingClass = mkOption { description = "IO scheduling class for btrbk (see ionice(1) for a quick description). Applies to local instances, and remote ones connecting by ssh if set to idle."; - type = lib.types.enum [ "idle" "best-effort" "realtime" ]; + type = types.enum [ "idle" "best-effort" "realtime" ]; default = "best-effort"; }; - instances = lib.mkOption { + instances = mkOption { description = "Set of btrbk instances. The instance named <literal>btrbk</literal> is the default one."; - type = with lib.types; + type = with types; attrsOf ( submodule { options = { - onCalendar = lib.mkOption { - type = lib.types.str; + onCalendar = mkOption { + type = types.nullOr types.str; default = "daily"; - description = "How often this btrbk instance is started. See systemd.time(7) for more information about the format."; + description = '' + How often this btrbk instance is started. See systemd.time(7) for more information about the format. + Setting it to null disables the timer, thus this instance can only be started manually. + ''; }; - settings = lib.mkOption { - type = let t = lib.types.attrsOf (lib.types.either lib.types.str (t // { description = "instances of this type recursively"; })); in t; + settings = mkOption { + type = let t = types.attrsOf (types.either types.str (t // { description = "instances of this type recursively"; })); in t; default = { }; example = { snapshot_preserve_min = "2d"; @@ -103,16 +126,16 @@ in ); default = { }; }; - sshAccess = lib.mkOption { + sshAccess = mkOption { description = "SSH keys that should be able to make or push snapshots on this system remotely with btrbk"; - type = with lib.types; listOf ( + type = with types; listOf ( submodule { options = { - key = lib.mkOption { + key = mkOption { type = str; description = "SSH public key allowed to login as user <literal>btrbk</literal> to run remote backups."; }; - roles = lib.mkOption { + roles = mkOption { type = listOf (enum [ "info" "source" "target" "delete" "snapshot" "send" "receive" ]); example = [ "source" "info" "send" ]; description = "What actions can be performed with this SSH key. See ssh_filter_btrbk(1) for details"; @@ -125,7 +148,7 @@ in }; }; - config = lib.mkIf (sshEnabled || serviceEnabled) { + config = mkIf (sshEnabled || serviceEnabled) { environment.systemPackages = [ pkgs.btrbk ] ++ cfg.extraPackages; security.sudo.extraRules = [ { @@ -152,14 +175,14 @@ in ( v: let - options = lib.concatMapStringsSep " " (x: "--" + x) v.roles; + options = concatMapStringsSep " " (x: "--" + x) v.roles; ioniceClass = { "idle" = 3; "best-effort" = 2; "realtime" = 1; }.${cfg.ioSchedulingClass}; in - ''command="${pkgs.util-linux}/bin/ionice -t -c ${toString ioniceClass} ${lib.optionalString (cfg.niceness >= 1) "${pkgs.coreutils}/bin/nice -n ${toString cfg.niceness}"} ${pkgs.btrbk}/share/btrbk/scripts/ssh_filter_btrbk.sh --sudo ${options}" ${v.key}'' + ''command="${pkgs.util-linux}/bin/ionice -t -c ${toString ioniceClass} ${optionalString (cfg.niceness >= 1) "${pkgs.coreutils}/bin/nice -n ${toString cfg.niceness}"} ${pkgs.btrbk}/share/btrbk/scripts/ssh_filter_btrbk.sh --sudo ${options}" ${v.key}'' ) cfg.sshAccess; }; @@ -169,7 +192,7 @@ in "d /var/lib/btrbk/.ssh 0700 btrbk btrbk" "f /var/lib/btrbk/.ssh/config 0700 btrbk btrbk - StrictHostKeyChecking=accept-new" ]; - environment.etc = lib.mapAttrs' + environment.etc = mapAttrs' ( name: instance: { name = "btrbk/${name}.conf"; @@ -177,7 +200,7 @@ in } ) cfg.instances; - systemd.services = lib.mapAttrs' + systemd.services = mapAttrs' ( name: _: { name = "btrbk-${name}"; @@ -199,7 +222,7 @@ in ) cfg.instances; - systemd.timers = lib.mapAttrs' + systemd.timers = mapAttrs' ( name: instance: { name = "btrbk-${name}"; @@ -214,7 +237,8 @@ in }; } ) - cfg.instances; + (filterAttrs (name: instance: instance.onCalendar != null) + cfg.instances); }; } diff --git a/nixos/modules/services/hardware/udev.nix b/nixos/modules/services/hardware/udev.nix index 2f386617187..2e9deebbb74 100644 --- a/nixos/modules/services/hardware/udev.nix +++ b/nixos/modules/services/hardware/udev.nix @@ -171,6 +171,11 @@ let mv etc/udev/hwdb.bin $out ''; + compressFirmware = if config.boot.kernelPackages.kernelAtLeast "5.3" then + pkgs.compressFirmwareXz + else + id; + # Udev has a 512-character limit for ENV{PATH}, so create a symlink # tree to work around this. udevPath = pkgs.buildEnv { @@ -267,7 +272,7 @@ in ''; apply = list: pkgs.buildEnv { name = "firmware"; - paths = list; + paths = map compressFirmware list; pathsToLink = [ "/lib/firmware" ]; ignoreCollisions = true; }; diff --git a/nixos/modules/services/mail/mailman.nix b/nixos/modules/services/mail/mailman.nix index f1e074587b3..5b714c384de 100644 --- a/nixos/modules/services/mail/mailman.nix +++ b/nixos/modules/services/mail/mailman.nix @@ -6,10 +6,10 @@ let cfg = config.services.mailman; - pythonEnv = pkgs.python3.withPackages (ps: - [ps.mailman ps.mailman-web] - ++ lib.optional cfg.hyperkitty.enable ps.mailman-hyperkitty - ++ cfg.extraPythonPackages); + inherit (pkgs.mailmanPackages.buildEnvs { withHyperkitty = cfg.hyperkitty.enable; }) + mailmanEnv webEnv; + + withPostgresql = config.services.postgresql.enable; # This deliberately doesn't use recursiveUpdate so users can # override the defaults. @@ -72,6 +72,9 @@ in { stored in the world-readable Nix store. To continue using Hyperkitty, you must set services.mailman.hyperkitty.enable = true. '') + (mkRemovedOptionModule [ "services" "mailman" "package" ] '' + Didn't have an effect for several years. + '') ]; options = { @@ -84,14 +87,6 @@ in { description = "Enable Mailman on this host. Requires an active MTA on the host (e.g. Postfix)."; }; - package = mkOption { - type = types.package; - default = pkgs.mailman; - defaultText = literalExpression "pkgs.mailman"; - example = literalExpression "pkgs.mailman.override { archivers = []; }"; - description = "Mailman package to use"; - }; - enablePostfix = mkOption { type = types.bool; default = true; @@ -185,7 +180,7 @@ in { mailman.layout = "fhs"; "paths.fhs" = { - bin_dir = "${pkgs.python3Packages.mailman}/bin"; + bin_dir = "${pkgs.mailmanPackages.mailman}/bin"; var_dir = "/var/lib/mailman"; queue_dir = "$var_dir/queue"; template_dir = "$var_dir/templates"; @@ -295,9 +290,12 @@ in { name = "mailman-tools"; # We don't want to pollute the system PATH with a python # interpreter etc. so let's pick only the stuff we actually - # want from pythonEnv + # want from {web,mailman}Env pathsToLink = ["/bin"]; - paths = [pythonEnv]; + paths = [ mailmanEnv webEnv ]; + # Only mailman-related stuff is installed, the rest is removed + # in `postBuild`. + ignoreCollisions = true; postBuild = '' find $out/bin/ -mindepth 1 -not -name "mailman*" -delete ''; @@ -320,12 +318,14 @@ in { description = "GNU Mailman Master Process"; before = lib.optional cfg.enablePostfix "postfix.service"; after = [ "network.target" ] - ++ lib.optional cfg.enablePostfix "postfix-setup.service"; + ++ lib.optional cfg.enablePostfix "postfix-setup.service" + ++ lib.optional withPostgresql "postgresql.service"; restartTriggers = [ config.environment.etc."mailman.cfg".source ]; + requires = optional withPostgresql "postgresql.service"; wantedBy = [ "multi-user.target" ]; serviceConfig = { - ExecStart = "${pythonEnv}/bin/mailman start"; - ExecStop = "${pythonEnv}/bin/mailman stop"; + ExecStart = "${mailmanEnv}/bin/mailman start"; + ExecStop = "${mailmanEnv}/bin/mailman stop"; User = "mailman"; Group = "mailman"; Type = "forking"; @@ -340,6 +340,8 @@ in { before = [ "mailman.service" "mailman-web-setup.service" "mailman-uwsgi.service" "hyperkitty.service" ]; requiredBy = [ "mailman.service" "mailman-web-setup.service" "mailman-uwsgi.service" "hyperkitty.service" ]; path = with pkgs; [ jq ]; + after = optional withPostgresql "postgresql.service"; + requires = optional withPostgresql "postgresql.service"; serviceConfig.Type = "oneshot"; script = '' mailmanDir=/var/lib/mailman @@ -381,9 +383,9 @@ in { restartTriggers = [ config.environment.etc."mailman3/settings.py".source ]; script = '' [[ -e "${webSettings.STATIC_ROOT}" ]] && find "${webSettings.STATIC_ROOT}/" -mindepth 1 -delete - ${pythonEnv}/bin/mailman-web migrate - ${pythonEnv}/bin/mailman-web collectstatic - ${pythonEnv}/bin/mailman-web compress + ${webEnv}/bin/mailman-web migrate + ${webEnv}/bin/mailman-web collectstatic + ${webEnv}/bin/mailman-web compress ''; serviceConfig = { User = cfg.webUser; @@ -397,14 +399,16 @@ in { uwsgiConfig.uwsgi = { type = "normal"; plugins = ["python3"]; - home = pythonEnv; + home = webEnv; module = "mailman_web.wsgi"; http = "127.0.0.1:18507"; }; uwsgiConfigFile = pkgs.writeText "uwsgi-mailman.json" (builtins.toJSON uwsgiConfig); in { wantedBy = ["multi-user.target"]; - requires = ["mailman-uwsgi.socket" "mailman-web-setup.service"]; + after = optional withPostgresql "postgresql.service"; + requires = ["mailman-uwsgi.socket" "mailman-web-setup.service"] + ++ optional withPostgresql "postgresql.service"; restartTriggers = [ config.environment.etc."mailman3/settings.py".source ]; serviceConfig = { # Since the mailman-web settings.py obstinately creates a logs @@ -422,7 +426,7 @@ in { startAt = "daily"; restartTriggers = [ config.environment.etc."mailman.cfg".source ]; serviceConfig = { - ExecStart = "${pythonEnv}/bin/mailman digests --send"; + ExecStart = "${mailmanEnv}/bin/mailman digests --send"; User = "mailman"; Group = "mailman"; }; @@ -434,7 +438,7 @@ in { restartTriggers = [ config.environment.etc."mailman3/settings.py".source ]; wantedBy = [ "mailman.service" "multi-user.target" ]; serviceConfig = { - ExecStart = "${pythonEnv}/bin/mailman-web qcluster"; + ExecStart = "${webEnv}/bin/mailman-web qcluster"; User = cfg.webUser; Group = "mailman"; WorkingDirectory = "/var/lib/mailman-web"; @@ -453,7 +457,7 @@ in { inherit startAt; restartTriggers = [ config.environment.etc."mailman3/settings.py".source ]; serviceConfig = { - ExecStart = "${pythonEnv}/bin/mailman-web runjobs ${name}"; + ExecStart = "${webEnv}/bin/mailman-web runjobs ${name}"; User = cfg.webUser; Group = "mailman"; WorkingDirectory = "/var/lib/mailman-web"; @@ -462,7 +466,7 @@ in { }; meta = { - maintainers = with lib.maintainers; [ lheckemann qyliss ]; + maintainers = with lib.maintainers; [ lheckemann qyliss ma27 ]; doc = ./mailman.xml; }; diff --git a/nixos/modules/services/misc/mbpfan.nix b/nixos/modules/services/misc/mbpfan.nix index e0a4d8a13e7..7a149ff47e6 100644 --- a/nixos/modules/services/misc/mbpfan.nix +++ b/nixos/modules/services/misc/mbpfan.nix @@ -31,7 +31,7 @@ in { settings = mkOption { default = {}; - description = "The INI configuration for Mbpfan."; + description = "INI configuration for Mbpfan."; type = types.submodule { freeformType = settingsFormat.type; @@ -39,32 +39,26 @@ in { type = types.nullOr types.int; default = 2000; description = '' - The minimum fan speed. Setting to null enables automatic detection. - Check minimum fan limits with "cat /sys/devices/platform/applesmc.768/fan*_min". - ''; - }; - options.general.max_fan1_speed = mkOption { - type = types.nullOr types.int; - default = 6199; - description = '' - The maximum fan speed. Setting to null enables automatic detection. - Check maximum fan limits with "cat /sys/devices/platform/applesmc.768/fan*_max". + You can check minimum and maximum fan limits with + "cat /sys/devices/platform/applesmc.768/fan*_min" and + "cat /sys/devices/platform/applesmc.768/fan*_max" respectively. + Setting to null implies using default value from applesmc. ''; }; options.general.low_temp = mkOption { type = types.int; default = 55; - description = "Temperature below which fan speed will be at minimum. Try ranges 55-63."; + description = "If temperature is below this, fans will run at minimum speed."; }; options.general.high_temp = mkOption { type = types.int; default = 58; - description = "Fan will increase speed when higher than this temperature. Try ranges 58-66."; + description = "If temperature is above this, fan speed will gradually increase."; }; options.general.max_temp = mkOption { type = types.int; default = 86; - description = "Fan will run at full speed above this temperature. Do not set it > 90."; + description = "If temperature is above this, fans will run at maximum speed."; }; options.general.polling_interval = mkOption { type = types.int; diff --git a/nixos/modules/services/misc/nitter.nix b/nixos/modules/services/misc/nitter.nix index 97005c9d914..5bf0e6bc008 100644 --- a/nixos/modules/services/misc/nitter.nix +++ b/nixos/modules/services/misc/nitter.nix @@ -277,7 +277,7 @@ in Add settings here to override NixOS module generated settings. Check the official repository for the available settings: - https://github.com/zedeus/nitter/blob/master/nitter.conf + https://github.com/zedeus/nitter/blob/master/nitter.example.conf ''; }; diff --git a/nixos/modules/services/monitoring/prometheus/default.nix b/nixos/modules/services/monitoring/prometheus/default.nix index ceb2db1faef..41848c1c6d3 100644 --- a/nixos/modules/services/monitoring/prometheus/default.nix +++ b/nixos/modules/services/monitoring/prometheus/default.nix @@ -5,6 +5,9 @@ with lib; let json = pkgs.formats.json { }; cfg = config.services.prometheus; + checkConfigEnabled = + (lib.isBool cfg.checkConfig && cfg.checkConfig) + || cfg.checkConfig == "syntax-only"; workingDir = "/var/lib/" + cfg.stateDir; @@ -27,7 +30,7 @@ let # a wrapper that verifies that the configuration is valid promtoolCheck = what: name: file: - if cfg.checkConfig then + if checkConfigEnabled then pkgs.runCommandLocal "${name}-${replaceStrings [" "] [""] what}-checked" { buildInputs = [ cfg.package ]; } '' @@ -58,7 +61,7 @@ let pkgs.writeText "prometheus.yml" cfg.configText else generatedPrometheusYml; in - promtoolCheck "check config" "prometheus.yml" yml; + promtoolCheck "check config ${lib.optionalString (cfg.checkConfig == "syntax-only") "--syntax-only"}" "prometheus.yml" yml; cmdlineArgs = cfg.extraFlags ++ [ "--storage.tsdb.path=${workingDir}/data/" @@ -1726,16 +1729,20 @@ in }; checkConfig = mkOption { - type = types.bool; + type = with types; either bool (enum [ "syntax-only" ]); default = true; + example = "syntax-only"; description = '' Check configuration with <literal>promtool check</literal>. The call to <literal>promtool</literal> is - subject to sandboxing by Nix. When credentials are stored in - external files (<literal>password_file</literal>, - <literal>bearer_token_file</literal>, etc), they will not be - visible to <literal>promtool</literal> and it will report - errors, despite a correct configuration. + subject to sandboxing by Nix. + + If you use credentials stored in external files + (<literal>password_file</literal>, <literal>bearer_token_file</literal>, etc), + they will not be visible to <literal>promtool</literal> + and it will report errors, despite a correct configuration. + To resolve this, you may set this option to <literal>"syntax-only"</literal> + in order to only syntax check the Prometheus configuration. ''; }; diff --git a/nixos/modules/services/networking/ddclient.nix b/nixos/modules/services/networking/ddclient.nix index d025c8f8177..faee99b175e 100644 --- a/nixos/modules/services/networking/ddclient.nix +++ b/nixos/modules/services/networking/ddclient.nix @@ -181,7 +181,7 @@ with lib; }; verbose = mkOption { - default = true; + default = false; type = bool; description = '' Print verbose information. diff --git a/nixos/modules/services/networking/frr.nix b/nixos/modules/services/networking/frr.nix index 45a82b9450a..98452123f03 100644 --- a/nixos/modules/services/networking/frr.nix +++ b/nixos/modules/services/networking/frr.nix @@ -106,6 +106,14 @@ let TCP Port to bind to for the VTY interface. ''; }; + + extraOptions = mkOption { + type = types.listOf types.str; + default = []; + description = '' + Extra options for the daemon. + ''; + }; }; in @@ -196,7 +204,8 @@ in PIDFile = "frr/${daemon}.pid"; ExecStart = "${pkgs.frr}/libexec/frr/${daemon} -f /etc/frr/${service}.conf" + optionalString (scfg.vtyListenAddress != "") " -A ${scfg.vtyListenAddress}" - + optionalString (scfg.vtyListenPort != null) " -P ${toString scfg.vtyListenPort}"; + + optionalString (scfg.vtyListenPort != null) " -P ${toString scfg.vtyListenPort}" + + " " + (concatStringsSep " " scfg.extraOptions); ExecReload = "${pkgs.python3.interpreter} ${pkgs.frr}/libexec/frr/frr-reload.py --reload --daemon ${daemonName service} --bindir ${pkgs.frr}/bin --rundir /run/frr /etc/frr/${service}.conf"; Restart = "on-abnormal"; }; diff --git a/nixos/modules/services/networking/nebula.nix b/nixos/modules/services/networking/nebula.nix index de4439415cf..c83cd9d521c 100644 --- a/nixos/modules/services/networking/nebula.nix +++ b/nixos/modules/services/networking/nebula.nix @@ -192,6 +192,7 @@ in Group = networkId; }) ]; + unitConfig.StartLimitIntervalSec = 0; # ensure Restart=always is always honoured (networks can go down for arbitrarily long) }; }) enabledNetworks); diff --git a/nixos/modules/services/networking/radicale.nix b/nixos/modules/services/networking/radicale.nix index c6c40777ed7..227bafc1d0e 100644 --- a/nixos/modules/services/networking/radicale.nix +++ b/nixos/modules/services/networking/radicale.nix @@ -164,7 +164,7 @@ in { StateDirectoryMode = "0750"; # Hardening CapabilityBoundingSet = [ "" ]; - DeviceAllow = [ "/dev/stdin" ]; + DeviceAllow = [ "/dev/stdin" "/dev/urandom" ]; DevicePolicy = "strict"; IPAddressAllow = mkIf bindLocalhost "localhost"; IPAddressDeny = mkIf bindLocalhost "any"; diff --git a/nixos/modules/services/networking/ssh/sshd.nix b/nixos/modules/services/networking/ssh/sshd.nix index d467c3c0471..6b69d559748 100644 --- a/nixos/modules/services/networking/ssh/sshd.nix +++ b/nixos/modules/services/networking/ssh/sshd.nix @@ -293,6 +293,7 @@ in kexAlgorithms = mkOption { type = types.listOf types.str; default = [ + "sntrup761x25519-sha512@openssh.com" "curve25519-sha256" "curve25519-sha256@libssh.org" "diffie-hellman-group-exchange-sha256" @@ -301,7 +302,7 @@ in Allowed key exchange algorithms </para> <para> - Defaults to recommended settings from both + Uses the lower bound recommended in both <link xlink:href="https://stribika.github.io/2015/01/04/secure-secure-shell.html" /> and <link xlink:href="https://infosec.mozilla.org/guidelines/openssh#modern-openssh-67" /> diff --git a/nixos/modules/services/networking/uptermd.nix b/nixos/modules/services/networking/uptermd.nix index 072f561f5c3..b845a00649e 100644 --- a/nixos/modules/services/networking/uptermd.nix +++ b/nixos/modules/services/networking/uptermd.nix @@ -85,6 +85,7 @@ in AmbientCapabilities = mkIf (cfg.port < 1024) [ "CAP_NET_BIND_SERVICE" ]; CapabilityBoundingSet = mkIf (cfg.port < 1024) [ "CAP_NET_BIND_SERVICE" ]; PrivateUsers = cfg.port >= 1024; + DynamicUser = true; LockPersonality = true; MemoryDenyWriteExecute = true; PrivateDevices = true; @@ -95,7 +96,9 @@ in ProtectKernelLogs = true; ProtectKernelModules = true; ProtectKernelTunables = true; - RestrictAddressFamilies = [ "AF_INET" "AF_INET6" ]; + ProtectProc = "invisible"; + # AF_UNIX is for ssh-keygen, which relies on nscd to resolve the uid to a user + RestrictAddressFamilies = [ "AF_INET" "AF_INET6" "AF_UNIX" ]; RestrictNamespaces = true; RestrictRealtime = true; SystemCallArchitectures = "native"; diff --git a/nixos/modules/services/networking/wg-quick.nix b/nixos/modules/services/networking/wg-quick.nix index 61e9fe5096b..0b3815d0cc6 100644 --- a/nixos/modules/services/networking/wg-quick.nix +++ b/nixos/modules/services/networking/wg-quick.nix @@ -211,7 +211,7 @@ let postUp = optional (values.privateKeyFile != null) "wg set ${name} private-key <(cat ${values.privateKeyFile})" ++ (concatMap (peer: optional (peer.presharedKeyFile != null) "wg set ${name} peer ${peer.publicKey} preshared-key <(cat ${peer.presharedKeyFile})") values.peers) ++ - optional (values.postUp != null) values.postUp; + optional (values.postUp != "") values.postUp; postUpFile = if postUp != [] then writeScriptFile "postUp.sh" (concatMapStringsSep "\n" (line: line) postUp) else null; preDownFile = if values.preDown != "" then writeScriptFile "preDown.sh" values.preDown else null; postDownFile = if values.postDown != "" then writeScriptFile "postDown.sh" values.postDown else null; diff --git a/nixos/modules/services/networking/wireguard.nix b/nixos/modules/services/networking/wireguard.nix index 7cd44b2f8a0..a3c3c245f1d 100644 --- a/nixos/modules/services/networking/wireguard.nix +++ b/nixos/modules/services/networking/wireguard.nix @@ -301,8 +301,9 @@ let { description = "WireGuard Peer - ${interfaceName} - ${peer.publicKey}"; requires = [ "wireguard-${interfaceName}.service" ]; - after = [ "wireguard-${interfaceName}.service" ]; - wantedBy = [ "multi-user.target" "wireguard-${interfaceName}.service" ]; + wants = [ "network-online.target" ]; + after = [ "wireguard-${interfaceName}.service" "network-online.target" ]; + wantedBy = [ "wireguard-${interfaceName}.service" ]; environment.DEVICE = interfaceName; environment.WG_ENDPOINT_RESOLUTION_RETRIES = "infinity"; path = with pkgs; [ iproute2 wireguard-tools ]; @@ -379,8 +380,9 @@ let nameValuePair "wireguard-${name}" { description = "WireGuard Tunnel - ${name}"; - requires = [ "network-online.target" ]; - after = [ "network.target" "network-online.target" ]; + after = [ "network-pre.target" ]; + wants = [ "network.target" ]; + before = [ "network.target" ]; wantedBy = [ "multi-user.target" ]; environment.DEVICE = name; path = with pkgs; [ kmod iproute2 wireguard-tools ]; diff --git a/nixos/modules/services/networking/zeronet.nix b/nixos/modules/services/networking/zeronet.nix index dd83b7facc1..8be6692561d 100644 --- a/nixos/modules/services/networking/zeronet.nix +++ b/nixos/modules/services/networking/zeronet.nix @@ -19,6 +19,13 @@ in with lib; { options.services.zeronet = { enable = mkEnableOption "zeronet"; + package = mkOption { + type = types.package; + default = pkgs.zeronet; + defaultText = literalExpression "pkgs.zeronet"; + description = "ZeroNet package to use"; + }; + settings = mkOption { type = with types; attrsOf (oneOf [ str int bool (listOf str) ]); default = {}; @@ -72,7 +79,7 @@ in with lib; { systemd.services.zeronet = { description = "zeronet"; - after = [ "network.target" (optionalString cfg.tor "tor.service") ]; + after = [ "network.target" ] ++ optional cfg.tor "tor.service"; wantedBy = [ "multi-user.target" ]; serviceConfig = { @@ -80,7 +87,7 @@ in with lib; { DynamicUser = true; StateDirectory = "zeronet"; SupplementaryGroups = mkIf cfg.tor [ "tor" ]; - ExecStart = "${pkgs.zeronet}/bin/zeronet --config_file ${configFile}"; + ExecStart = "${cfg.package}/bin/zeronet --config_file ${configFile}"; }; }; }; diff --git a/nixos/modules/services/web-apps/nextcloud.nix b/nixos/modules/services/web-apps/nextcloud.nix index a4b886821eb..a58e8aa3abd 100644 --- a/nixos/modules/services/web-apps/nextcloud.nix +++ b/nixos/modules/services/web-apps/nextcloud.nix @@ -153,11 +153,11 @@ in { package = mkOption { type = types.package; description = "Which package to use for the Nextcloud instance."; - relatedPackages = [ "nextcloud22" "nextcloud23" ]; + relatedPackages = [ "nextcloud23" "nextcloud24" ]; }; phpPackage = mkOption { type = types.package; - relatedPackages = [ "php74" "php80" ]; + relatedPackages = [ "php74" "php80" "php81" ]; defaultText = "pkgs.php"; description = '' PHP package to use for Nextcloud. @@ -546,16 +546,29 @@ in { ''; }; - nginx.recommendedHttpHeaders = mkOption { - type = types.bool; - default = true; - description = "Enable additional recommended HTTP response headers"; + nginx = { + recommendedHttpHeaders = mkOption { + type = types.bool; + default = true; + description = "Enable additional recommended HTTP response headers"; + }; + hstsMaxAge = mkOption { + type = types.ints.positive; + default = 15552000; + description = '' + Value for the <code>max-age</code> directive of the HTTP + <code>Strict-Transport-Security</code> header. + + See section 6.1.1 of IETF RFC 6797 for detailed information on this + directive and header. + ''; + }; }; }; config = mkIf cfg.enable (mkMerge [ { warnings = let - latest = 23; + latest = 24; upgradeWarning = major: nixos: '' A legacy Nextcloud install (from before NixOS ${nixos}) may be installed. @@ -591,6 +604,7 @@ in { ++ (optional (versionOlder cfg.package.version "21") (upgradeWarning 20 "21.05")) ++ (optional (versionOlder cfg.package.version "22") (upgradeWarning 21 "21.11")) ++ (optional (versionOlder cfg.package.version "23") (upgradeWarning 22 "22.05")) + ++ (optional (versionOlder cfg.package.version "24") (upgradeWarning 23 "22.05")) ++ (optional isUnsupportedMariadb '' You seem to be using MariaDB at an unsupported version (i.e. at least 10.6)! Please note that this isn't supported officially by Nextcloud. You can either @@ -611,16 +625,16 @@ in { nextcloud defined in an overlay, please set `services.nextcloud.package` to `pkgs.nextcloud`. '' - else if versionOlder stateVersion "21.11" then nextcloud21 else if versionOlder stateVersion "22.05" then nextcloud22 - else nextcloud23 + else nextcloud24 ); services.nextcloud.datadir = mkOptionDefault config.services.nextcloud.home; services.nextcloud.phpPackage = if versionOlder cfg.package.version "21" then pkgs.php74 - else pkgs.php80; + else if versionOlder cfg.package.version "24" then pkgs.php80 + else pkgs.php81; } { assertions = [ @@ -702,7 +716,7 @@ in { 'skeletondirectory' => '${cfg.skeletonDirectory}', ${optionalString cfg.caching.apcu "'memcache.local' => '\\OC\\Memcache\\APCu',"} 'log_type' => 'syslog', - 'log_level' => '${builtins.toString cfg.logLevel}', + 'loglevel' => '${builtins.toString cfg.logLevel}', ${optionalString (c.overwriteProtocol != null) "'overwriteprotocol' => '${c.overwriteProtocol}',"} ${optionalString (c.dbname != null) "'dbname' => '${c.dbname}',"} ${optionalString (c.dbhost != null) "'dbhost' => '${c.dbhost}',"} @@ -871,7 +885,7 @@ in { # FIXME(@Ma27) Nextcloud isn't compatible with mariadb 10.6, # this is a workaround. # See https://help.nextcloud.com/t/update-to-next-cloud-21-0-2-has-get-an-error/117028/22 - settings = { + settings = mkIf (versionOlder cfg.package.version "24") { mysqld = { innodb_read_only_compressed = 0; }; @@ -983,7 +997,9 @@ in { add_header X-Permitted-Cross-Domain-Policies none; add_header X-Frame-Options sameorigin; add_header Referrer-Policy no-referrer; - add_header Strict-Transport-Security "max-age=15552000; includeSubDomains" always; + ''} + ${optionalString (cfg.https) '' + add_header Strict-Transport-Security "max-age=${toString cfg.nginx.hstsMaxAge}; includeSubDomains" always; ''} client_max_body_size ${cfg.maxUploadSize}; fastcgi_buffers 64 4K; diff --git a/nixos/modules/services/web-apps/nextcloud.xml b/nixos/modules/services/web-apps/nextcloud.xml index 8f55086a2bd..b46f34420a7 100644 --- a/nixos/modules/services/web-apps/nextcloud.xml +++ b/nixos/modules/services/web-apps/nextcloud.xml @@ -11,7 +11,7 @@ desktop client is packaged at <literal>pkgs.nextcloud-client</literal>. </para> <para> - The current default by NixOS is <package>nextcloud23</package> which is also the latest + The current default by NixOS is <package>nextcloud24</package> which is also the latest major version available. </para> <section xml:id="module-services-nextcloud-basic-usage"> diff --git a/nixos/modules/services/web-apps/restya-board.nix b/nixos/modules/services/web-apps/restya-board.nix index 0bfa2368787..1a8199ab3b3 100644 --- a/nixos/modules/services/web-apps/restya-board.nix +++ b/nixos/modules/services/web-apps/restya-board.nix @@ -263,8 +263,8 @@ in serviceConfig.RemainAfterExit = true; wantedBy = [ "multi-user.target" ]; - requires = [ "postgresql.service" ]; - after = [ "network.target" "postgresql.service" ]; + requires = if cfg.database.host == null then [] else [ "postgresql.service" ]; + after = [ "network.target" ] ++ (if cfg.database.host == null then [] else [ "postgresql.service" ]); script = '' rm -rf "${runDir}" @@ -282,7 +282,7 @@ in sed -i "s/^.*'R_DB_PASSWORD'.*$/define('R_DB_PASSWORD', 'restya');/g" "${runDir}/server/php/config.inc.php" '' else '' sed -i "s/^.*'R_DB_HOST'.*$/define('R_DB_HOST', '${cfg.database.host}');/g" "${runDir}/server/php/config.inc.php" - sed -i "s/^.*'R_DB_PASSWORD'.*$/define('R_DB_PASSWORD', ${if cfg.database.passwordFile == null then "''" else "'file_get_contents(${cfg.database.passwordFile})'"});/g" "${runDir}/server/php/config.inc.php + sed -i "s/^.*'R_DB_PASSWORD'.*$/define('R_DB_PASSWORD', ${if cfg.database.passwordFile == null then "''" else "'$(cat ${cfg.database.passwordFile})');/g"}" "${runDir}/server/php/config.inc.php" ''} sed -i "s/^.*'R_DB_PORT'.*$/define('R_DB_PORT', '${toString cfg.database.port}');/g" "${runDir}/server/php/config.inc.php" sed -i "s/^.*'R_DB_NAME'.*$/define('R_DB_NAME', '${cfg.database.name}');/g" "${runDir}/server/php/config.inc.php" diff --git a/nixos/modules/services/x11/desktop-managers/pantheon.nix b/nixos/modules/services/x11/desktop-managers/pantheon.nix index 004d14b634d..083b12193da 100644 --- a/nixos/modules/services/x11/desktop-managers/pantheon.nix +++ b/nixos/modules/services/x11/desktop-managers/pantheon.nix @@ -136,6 +136,7 @@ in services.colord.enable = mkDefault true; services.fwupd.enable = mkDefault true; services.packagekit.enable = mkDefault true; + services.power-profiles-daemon.enable = mkDefault true; services.touchegg.enable = mkDefault true; services.touchegg.package = pkgs.pantheon.touchegg; services.tumbler.enable = mkDefault true; @@ -167,10 +168,10 @@ in isSystem = true; }; services.udev.packages = [ - pkgs.gnome.gnome-settings-daemon338 + pkgs.pantheon.gnome-settings-daemon ]; systemd.packages = [ - pkgs.gnome.gnome-settings-daemon338 + pkgs.pantheon.gnome-settings-daemon ]; programs.dconf.enable = true; networking.networkmanager.enable = mkDefault true; @@ -212,12 +213,10 @@ in elementary-capnet-assist elementary-notifications elementary-settings-daemon + gnome-settings-daemon pantheon-agent-geoclue2 pantheon-agent-polkit - ]) ++ (utils.removePackagesByName [ - gnome.gnome-font-viewer - gnome.gnome-settings-daemon338 - ] config.environment.pantheon.excludePackages); + ]); programs.evince.enable = mkDefault true; programs.file-roller.enable = mkDefault true; @@ -272,7 +271,9 @@ in }) (mkIf serviceCfg.apps.enable { - environment.systemPackages = with pkgs.pantheon; utils.removePackagesByName ([ + environment.systemPackages = utils.removePackagesByName ([ + pkgs.gnome.gnome-font-viewer + ] ++ (with pkgs.pantheon; [ elementary-calculator elementary-calendar elementary-camera @@ -290,7 +291,8 @@ in # Only install appcenter if flatpak is enabled before # https://github.com/NixOS/nixpkgs/issues/15932 is resolved. appcenter - ]) config.environment.pantheon.excludePackages; + sideload + ])) config.environment.pantheon.excludePackages; # needed by screenshot fonts.fonts = [ diff --git a/nixos/modules/services/x11/display-managers/gdm.nix b/nixos/modules/services/x11/display-managers/gdm.nix index 4941d13c810..45e3d84afa4 100644 --- a/nixos/modules/services/x11/display-managers/gdm.nix +++ b/nixos/modules/services/x11/display-managers/gdm.nix @@ -140,8 +140,13 @@ in environment = { GDM_X_SERVER_EXTRA_ARGS = toString (filter (arg: arg != "-terminate") cfg.xserverArgs); - # GDM is needed for gnome-login.session - XDG_DATA_DIRS = "${gdm}/share:${cfg.sessionData.desktops}/share:${pkgs.gnome.gnome-control-center}/share"; + XDG_DATA_DIRS = lib.makeSearchPath "share" [ + gdm # for gnome-login.session + cfg.sessionData.desktops + pkgs.gnome.gnome-control-center # for accessibility icon + pkgs.gnome.adwaita-icon-theme + pkgs.hicolor-icon-theme # empty icon theme as a base + ]; } // optionalAttrs (xSessionWrapper != null) { # Make GDM use this wrapper before running the session, which runs the # configured setupCommands. This relies on a patched GDM which supports diff --git a/nixos/modules/services/x11/window-managers/xmonad.nix b/nixos/modules/services/x11/window-managers/xmonad.nix index 68f97c2f504..66d11131391 100644 --- a/nixos/modules/services/x11/window-managers/xmonad.nix +++ b/nixos/modules/services/x11/window-managers/xmonad.nix @@ -128,33 +128,34 @@ in { [ ( (mod4Mask,xK_r), compileRestart True) , ( (mod4Mask,xK_q), restart "xmonad" True ) ] + compileRestart resume = do + dirs <- asks directories + whenX (recompile dirs True) $ do + when resume writeStateToFile + catchIO + ( do + args <- getArgs + executeFile (cacheDir dirs </> compiledConfig) False args Nothing + ) + + main = getDirectories >>= launch myConfig + -------------------------------------------- - {- version 0.17.0 -} + {- For versions before 0.17.0 use this instead -} -------------------------------------------- -- compileRestart resume = - -- dirs <- io getDirectories - -- whenX (recompile dirs True) $ + -- whenX (recompile True) $ -- when resume writeStateToFile -- *> catchIO -- ( do + -- dir <- getXMonadDataDir -- args <- getArgs - -- executeFile (cacheDir dirs </> compiledConfig) False args Nothing + -- executeFile (dir </> compiledConfig) False args Nothing -- ) -- - -- main = getDirectories >>= launch myConfig + -- main = launch myConfig -------------------------------------------- - compileRestart resume = - whenX (recompile True) $ - when resume writeStateToFile - *> catchIO - ( do - dir <- getXMonadDataDir - args <- getArgs - executeFile (dir </> compiledConfig) False args Nothing - ) - - main = launch myConfig ''; }; diff --git a/nixos/modules/system/boot/kernel.nix b/nixos/modules/system/boot/kernel.nix index fad00e39497..b2c92a85f7a 100644 --- a/nixos/modules/system/boot/kernel.nix +++ b/nixos/modules/system/boot/kernel.nix @@ -273,9 +273,6 @@ in boot.kernelModules = [ "loop" "atkbd" ]; - # The Linux kernel >= 2.6.27 provides firmware. - hardware.firmware = [ kernel ]; - # Create /etc/modules-load.d/nixos.conf, which is read by # systemd-modules-load.service to load required kernel modules. environment.etc = diff --git a/nixos/tests/all-tests.nix b/nixos/tests/all-tests.nix index e86dda9cb3d..84433806b48 100644 --- a/nixos/tests/all-tests.nix +++ b/nixos/tests/all-tests.nix @@ -62,6 +62,7 @@ in breitbandmessung = handleTest ./breitbandmessung.nix {}; brscan5 = handleTest ./brscan5.nix {}; btrbk = handleTest ./btrbk.nix {}; + btrbk-no-timer = handleTest ./btrbk-no-timer.nix {}; buildbot = handleTest ./buildbot.nix {}; buildkite-agents = handleTest ./buildkite-agents.nix {}; caddy = handleTest ./caddy.nix {}; diff --git a/nixos/tests/btrbk-no-timer.nix b/nixos/tests/btrbk-no-timer.nix new file mode 100644 index 00000000000..4fcab8839c8 --- /dev/null +++ b/nixos/tests/btrbk-no-timer.nix @@ -0,0 +1,37 @@ +import ./make-test-python.nix ({ lib, pkgs, ... }: + { + name = "btrbk-no-timer"; + meta.maintainers = with lib.maintainers; [ oxalica ]; + + nodes.machine = { ... }: { + environment.systemPackages = with pkgs; [ btrfs-progs ]; + services.btrbk.instances.local = { + onCalendar = null; + settings.volume."/mnt" = { + snapshot_dir = "btrbk/local"; + subvolume = "to_backup"; + }; + }; + }; + + testScript = '' + start_all() + + # Create btrfs partition at /mnt + machine.succeed("truncate --size=128M /data_fs") + machine.succeed("mkfs.btrfs /data_fs") + machine.succeed("mkdir /mnt") + machine.succeed("mount /data_fs /mnt") + machine.succeed("btrfs subvolume create /mnt/to_backup") + machine.succeed("mkdir -p /mnt/btrbk/local") + + # The service should not have any triggering timer. + unit = machine.get_unit_info('btrbk-local.service') + assert "TriggeredBy" not in unit + + # Manually starting the service should still work. + machine.succeed("echo foo > /mnt/to_backup/bar") + machine.start_job("btrbk-local.service") + machine.wait_until_succeeds("cat /mnt/btrbk/local/*/bar | grep foo") + ''; + }) diff --git a/nixos/tests/chromium.nix b/nixos/tests/chromium.nix index 3815dca7622..6b296fe8a61 100644 --- a/nixos/tests/chromium.nix +++ b/nixos/tests/chromium.nix @@ -45,12 +45,14 @@ mapAttrs (channel: chromiumPkg: makeTest { enableOCR = true; - machine.imports = [ ./common/user-account.nix ./common/x11.nix ]; - machine.virtualisation.memorySize = 2047; - machine.test-support.displayManager.auto.user = user; - machine.environment = { - systemPackages = [ chromiumPkg ]; - variables."XAUTHORITY" = "/home/alice/.Xauthority"; + nodes.machine = { ... }: { + imports = [ ./common/user-account.nix ./common/x11.nix ]; + virtualisation.memorySize = 2047; + test-support.displayManager.auto.user = user; + environment = { + systemPackages = [ chromiumPkg ]; + variables."XAUTHORITY" = "/home/alice/.Xauthority"; + }; }; testScript = let diff --git a/nixos/tests/keepassxc.nix b/nixos/tests/keepassxc.nix index d0f353c71e0..303be133040 100644 --- a/nixos/tests/keepassxc.nix +++ b/nixos/tests/keepassxc.nix @@ -62,7 +62,7 @@ import ./make-test-python.nix ({ pkgs, ...} : machine.send_key("tab") machine.send_chars("/home/alice/foo.keyfile") machine.send_key("ret") - # Passwords folder is displayed - machine.wait_for_text("Passwords") + # Database is unlocked (doesn't have "[Locked]" in the title anymore) + machine.wait_for_text("foo.kdbx - KeePassXC") ''; }) diff --git a/nixos/tests/nextcloud/default.nix b/nixos/tests/nextcloud/default.nix index b7b1c5c6600..45165b04bf8 100644 --- a/nixos/tests/nextcloud/default.nix +++ b/nixos/tests/nextcloud/default.nix @@ -18,4 +18,4 @@ foldl }; }) { } - [ 22 23 ] + [ 23 24 ] diff --git a/nixos/tests/nix-ld.nix b/nixos/tests/nix-ld.nix index 5c886182d96..ae5297ab87e 100644 --- a/nixos/tests/nix-ld.nix +++ b/nixos/tests/nix-ld.nix @@ -6,7 +6,7 @@ import ./make-test-python.nix ({ lib, pkgs, ...} : environment.systemPackages = [ (pkgs.runCommand "patched-hello" {} '' install -D -m755 ${pkgs.hello}/bin/hello $out/bin/hello - patchelf $out/bin/hello --set-interpreter ${pkgs.nix-ld.ldPath} + patchelf $out/bin/hello --set-interpreter $(cat ${pkgs.nix-ld}/nix-support/ldpath) '') ]; }; diff --git a/nixos/tests/uptermd.nix b/nixos/tests/uptermd.nix index b2ff9a1e0d9..d504ef06419 100644 --- a/nixos/tests/uptermd.nix +++ b/nixos/tests/uptermd.nix @@ -30,11 +30,14 @@ in server.wait_for_unit("uptermd.service") server.wait_for_unit("network-online.target") + # wait for upterm port to be reachable + client1.wait_until_succeeds("nc -z -v server 1337") + # Add SSH hostkeys from the server to both clients # uptermd needs an '@cert-authority entry so we need to modify the known_hosts file - client1.execute("sleep 3; mkdir -p ~/.ssh && ssh -o StrictHostKeyChecking=no -p 1337 server ls") + client1.execute("mkdir -p ~/.ssh && ssh -o StrictHostKeyChecking=no -p 1337 server ls") client1.execute("echo @cert-authority $(cat ~/.ssh/known_hosts) > ~/.ssh/known_hosts") - client2.execute("sleep 3; mkdir -p ~/.ssh && ssh -o StrictHostKeyChecking=no -p 1337 server ls") + client2.execute("mkdir -p ~/.ssh && ssh -o StrictHostKeyChecking=no -p 1337 server ls") client2.execute("echo @cert-authority $(cat ~/.ssh/known_hosts) > ~/.ssh/known_hosts") client1.wait_for_unit("multi-user.target") diff --git a/nixos/tests/xmonad.nix b/nixos/tests/xmonad.nix index aa55f0e3ca6..ec48c3e1127 100644 --- a/nixos/tests/xmonad.nix +++ b/nixos/tests/xmonad.nix @@ -13,7 +13,9 @@ let import System.Environment (getArgs) import System.FilePath ((</>)) - main = launch $ def { startupHook = startup } `additionalKeysP` myKeys + main = do + dirs <- getDirectories + launch (def { startupHook = startup } `additionalKeysP` myKeys) dirs startup = isSessionStart >>= \sessInit -> spawn "touch /tmp/${name}" @@ -23,14 +25,15 @@ let compiledConfig = printf "xmonad-%s-%s" arch os - compileRestart resume = - whenX (recompile True) $ + compileRestart resume = do + dirs <- asks directories + + whenX (recompile dirs True) $ when resume writeStateToFile *> catchIO ( do - dir <- getXMonadDataDir args <- getArgs - executeFile (dir </> compiledConfig) False args Nothing + executeFile (cacheDir dirs </> compiledConfig) False args Nothing ) ''; @@ -94,7 +97,7 @@ in { # set up the new config machine.succeed("mkdir -p ${user.home}/.xmonad") - machine.copy_from_host("${newConfig}", "${user.home}/.xmonad/xmonad.hs") + machine.copy_from_host("${newConfig}", "${user.home}/.config/xmonad/xmonad.hs") # recompile xmonad using the new config machine.send_key("alt-ctrl-q") diff --git a/pkgs/applications/accessibility/squeekboard/default.nix b/pkgs/applications/accessibility/squeekboard/default.nix index 94129d05288..b2586ef76c2 100644 --- a/pkgs/applications/accessibility/squeekboard/default.nix +++ b/pkgs/applications/accessibility/squeekboard/default.nix @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { pname = "squeekboard"; - version = "1.16.0"; + version = "1.17.0"; src = fetchFromGitLab { domain = "gitlab.gnome.org"; @@ -28,7 +28,7 @@ stdenv.mkDerivation rec { owner = "Phosh"; repo = pname; rev = "v${version}"; - sha256 = "sha256-51Grkn6NSR6azTRuq1vdbDg7d3HuQQ+ZJCsM2mSrSHk="; + sha256 = "sha256-U46OQ0bXkXv6za8vUZxtbxJKqiF/X/xxJsqQGpnRIpg="; }; cargoDeps = rustPlatform.fetchCargoTarball { @@ -37,7 +37,7 @@ stdenv.mkDerivation rec { cat Cargo.toml.in Cargo.deps > Cargo.toml ''; name = "${pname}-${version}"; - sha256 = "sha256-vQaiEENxaQxBGYP1br03wSkU7OGOYkJvMBUAOeb3jGk="; + sha256 = "sha256-4q8MW1n/xu538+R5ZlA+p/hd6pOQPKj7jOFwnuMc7sk="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/audio/amberol/default.nix b/pkgs/applications/audio/amberol/default.nix index c0b90592cd2..615a7964425 100644 --- a/pkgs/applications/audio/amberol/default.nix +++ b/pkgs/applications/audio/amberol/default.nix @@ -19,20 +19,20 @@ stdenv.mkDerivation rec { pname = "amberol"; - version = "0.6.1"; + version = "0.6.2"; src = fetchFromGitLab { domain = "gitlab.gnome.org"; owner = "World"; repo = pname; rev = version; - hash = "sha256-mbRBLhnALPFoHwvx05o0lH5Ld4BN+hPY2OyajgTFsek="; + hash = "sha256-cY4VZRtmDrIgjHa5pMOVO+lpPU+VHhLonpwTxKn834M="; }; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - hash = "sha256-/5AHwbolEWsj3ChLFJxQaccfookEGvSSkehw0THYnSE="; + hash = "sha256-z3R2UG31s7lV6c+dNChMvzimXfPbxDvuOL+Nduxwawg="; }; postPatch = '' diff --git a/pkgs/applications/audio/axoloti/default.nix b/pkgs/applications/audio/axoloti/default.nix deleted file mode 100644 index df885c90371..00000000000 --- a/pkgs/applications/audio/axoloti/default.nix +++ /dev/null @@ -1,101 +0,0 @@ -{ lib, stdenv, fetchFromGitHub, fetchurl, makeWrapper, unzip -, gnumake, gcc-arm-embedded, binutils-arm-embedded -, dfu-util-axoloti, jdk, ant, libfaketime }: - -stdenv.mkDerivation rec { - version = "1.0.12-2"; - pname = "axoloti"; - - src = fetchFromGitHub { - owner = "axoloti"; - repo = "axoloti"; - rev = version; - sha256 = "1qffis277wshldr3i939b0r2x3a2mlr53samxqmr2nk1sfm2b4w9"; - }; - - chibi_version = "2.6.9"; - chibi_name = "ChibiOS_${chibi_version}"; - - chibios = fetchurl { - url = "mirror://sourceforge/project/chibios/ChibiOS_RT%20stable/Version%20${chibi_version}/${chibi_name}.zip"; - sha256 = "0lb5s8pkj80mqhsy47mmq0lqk34s2a2m3xagzihalvabwd0frhlj"; - }; - - nativeBuildInputs = [ - makeWrapper - unzip - gcc-arm-embedded - binutils-arm-embedded - dfu-util-axoloti - ant - ]; - buildInputs = [jdk libfaketime ]; - - patchPhase = '' - unzip ${chibios} - mv ${chibi_name} chibios - (cd chibios/ext; unzip -q -o fatfs-0.9-patched.zip) - - # Remove source of non-determinism in ChibiOS - substituteInPlace "chibios/os/various/shell.c" \ - --replace "#ifdef __DATE__" "#if 0" - - # Hardcode path to "make" - for f in "firmware/compile_firmware_linux.sh" \ - "firmware/compile_patch_linux.sh"; do - substituteInPlace "$f" \ - --replace "make" "${gnumake}/bin/make" - done - - # Hardcode dfu-util path - substituteInPlace "platform_linux/upload_fw_dfu.sh" \ - --replace "/bin/dfu-util" "" - substituteInPlace "platform_linux/upload_fw_dfu.sh" \ - --replace "./dfu-util" "${dfu-util-axoloti}/bin/dfu-util" - - # Fix build version - substituteInPlace "build.xml" \ - --replace "(git missing)" "${version}" - - # Remove build time - substituteInPlace "build.xml" \ - --replace "<tstamp>" "" - substituteInPlace "build.xml" \ - --replace \ - '<format property="build.time" pattern="dd/MM/yyyy HH:mm:ss z"/>' \ - '<property name="build.time" value=""/>' - substituteInPlace "build.xml" \ - --replace "</tstamp>" "" - substituteInPlace "build.xml" \ - --replace \ - '{line.separator}</echo>' \ - '{line.separator}</echo> <touch file="src/main/java/axoloti/Version.java" millis="0" />' - ''; - - buildPhase = '' - find . -exec touch -d '1970-01-01 00:00' {} \; - (cd platform_linux; sh compile_firmware.sh) - faketime "1970-01-01 00:00:00" ant -Dbuild.runtime=true - ''; - - installPhase = '' - mkdir -p $out/bin $out/share/axoloti - - cp -r doc firmware chibios platform_linux CMSIS *.txt $out/share/axoloti/ - install -vD dist/Axoloti.jar $out/share/axoloti/ - - makeWrapper ${jdk}/bin/java $out/bin/axoloti --add-flags "-Daxoloti_release=$out/share/axoloti -Daxoloti_runtime=$out/share/axoloti -jar $out/share/axoloti/Axoloti.jar" - ''; - - meta = with lib; { - homepage = "http://www.axoloti.com"; - description = '' - Sketching embedded digital audio algorithms. - - To fix permissions of the Axoloti USB device node, add a similar udev rule to <literal>services.udev.extraRules</literal>: - <literal>SUBSYSTEM=="usb", ATTR{idVendor}=="16c0", ATTR{idProduct}=="0442", OWNER="someuser", GROUP="somegroup"</literal> - ''; - license = licenses.gpl3; - maintainers = with maintainers; [ ]; - }; -} diff --git a/pkgs/applications/audio/axoloti/dfu-util.nix b/pkgs/applications/audio/axoloti/dfu-util.nix deleted file mode 100644 index a8a2f8813af..00000000000 --- a/pkgs/applications/audio/axoloti/dfu-util.nix +++ /dev/null @@ -1,31 +0,0 @@ -{ lib, stdenv, fetchurl, pkg-config, libusb1-axoloti }: - -stdenv.mkDerivation rec { - pname = "dfu-util"; - version = "0.8"; - - nativeBuildInputs = [ pkg-config ]; - buildInputs = [ libusb1-axoloti ]; - - src = fetchurl { - url = "http://dfu-util.sourceforge.net/releases/${pname}-${version}.tar.gz"; - sha256 = "0n7h08avlzin04j93m6hkq9id6hxjiiix7ff9gc2n89aw6dxxjsm"; - }; - - meta = with lib; { - description = "Device firmware update (DFU) USB programmer"; - longDescription = '' - dfu-util is a program that implements the host (PC) side of the USB - DFU 1.0 and 1.1 (Universal Serial Bus Device Firmware Upgrade) protocol. - - DFU is intended to download and upload firmware to devices connected over - USB. It ranges from small devices like micro-controller boards up to mobile - phones. With dfu-util you are able to download firmware to your device or - upload firmware from it. - ''; - homepage = "http://dfu-util.sourceforge.net"; - license = licenses.gpl2Plus; - platforms = platforms.unix; - maintainers = [ ]; - }; -} diff --git a/pkgs/applications/audio/axoloti/libusb1.nix b/pkgs/applications/audio/axoloti/libusb1.nix deleted file mode 100644 index 820a8998f0b..00000000000 --- a/pkgs/applications/audio/axoloti/libusb1.nix +++ /dev/null @@ -1,39 +0,0 @@ -{ stdenv, lib, fetchurl, pkg-config, systemd, libobjc, IOKit, fetchpatch }: - -stdenv.mkDerivation rec { - pname = "libusb"; - version = "1.0.19"; - - src = fetchurl { - url = "mirror://sourceforge/libusb/libusb-${version}.tar.bz2"; - sha256 = "0h38p9rxfpg9vkrbyb120i1diq57qcln82h5fr7hvy82c20jql3c"; - }; - - outputs = [ "out" "dev" ]; # get rid of propagating systemd closure - - buildInputs = [ pkg-config ]; - propagatedBuildInputs = lib.optional stdenv.isLinux systemd - ++ lib.optionals stdenv.isDarwin [ libobjc IOKit ]; - - patches = [ - (fetchpatch { - name = "libusb.stdfu.patch"; - url = "https://raw.githubusercontent.com/axoloti/axoloti/1.0.12/platform_linux/src/libusb.stdfu.patch"; - sha256 = "194j7j61i4q6x0ihm9ms8dxd4vliw20n2rj6cm9h17qzdl9xr33d"; - }) - ]; - - NIX_LDFLAGS = lib.optionalString stdenv.isLinux "-lgcc_s"; - - preFixup = lib.optionalString stdenv.isLinux '' - sed 's,-ludev,-L${lib.getLib systemd}/lib -ludev,' -i $out/lib/libusb-1.0.la - ''; - - meta = with lib; { - homepage = "http://www.libusb.info"; - description = "User-space USB library"; - maintainers = with maintainers; [ ]; - platforms = platforms.unix; - license = licenses.lgpl21; - }; -} diff --git a/pkgs/applications/audio/bristol/default.nix b/pkgs/applications/audio/bristol/default.nix index 0c9248b5f0b..b96155cf688 100644 --- a/pkgs/applications/audio/bristol/default.nix +++ b/pkgs/applications/audio/bristol/default.nix @@ -19,6 +19,12 @@ stdenv.mkDerivation rec { configurePhase = "./configure --prefix=$out --enable-jack-default-audio --enable-jack-default-midi"; + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: brightonCLI.o:/build/bristol-0.60.11/brighton/brightonCLI.c:139: multiple definition of + # `event'; brightonMixerMenu.o:/build/bristol-0.60.11/brighton/brightonMixerMenu.c:1182: first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + preInstall = '' sed -e "s@\`which bristol\`@$out/bin/bristol@g" -i bin/startBristol sed -e "s@\`which brighton\`@$out/bin/brighton@g" -i bin/startBristol diff --git a/pkgs/applications/audio/dirt/default.nix b/pkgs/applications/audio/dirt/default.nix index a456d62e6f6..9d9c5c869f7 100644 --- a/pkgs/applications/audio/dirt/default.nix +++ b/pkgs/applications/audio/dirt/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, libsndfile, libsamplerate, liblo, libjack2 }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, libsndfile, libsamplerate, liblo, libjack2 }: stdenv.mkDerivation { pname = "dirt"; @@ -10,6 +10,15 @@ stdenv.mkDerivation { sha256 = "13adglk2d31d7mswfvi02b0rjdhzmsv11cc8smhidmrns3f9s96n"; fetchSubmodules = true; }; + patches = [ + # Pull patch pending upstream inclusion for upstream gcc-10 support: + # https://github.com/tidalcycles/Dirt/pull/65 + (fetchpatch { + name = "fno-common.patch"; + url = "https://github.com/tidalcycles/Dirt/commit/43fd267745d486228c4185b4fcbd7d9fbc362cc2.patch"; + sha256 = "08r34ylzs31wwf0la995pb149ccq0vr7qg4792pkhca57zi0bff8"; + }) + ]; buildInputs = [ libsndfile libsamplerate liblo libjack2 ]; postPatch = '' sed -i "s|./samples|$out/share/dirt/samples|" dirt.c diff --git a/pkgs/applications/audio/ecasound/default.nix b/pkgs/applications/audio/ecasound/default.nix index 108be8726c5..f23b11d1a67 100644 --- a/pkgs/applications/audio/ecasound/default.nix +++ b/pkgs/applications/audio/ecasound/default.nix @@ -60,7 +60,7 @@ stdenv.mkDerivation rec { strictDeps = true; CXXFLAGS = "-std=c++11"; - configureFlags = "--enable-liblilv --with-extra-cppflags=-Dnullptr=0"; + configureFlags = [ "--enable-liblilv" "--with-extra-cppflags=-Dnullptr=0" ]; postPatch = '' sed -i -e ' diff --git a/pkgs/applications/audio/gtkpod/default.nix b/pkgs/applications/audio/gtkpod/default.nix index e741f6fe298..220d2d38e14 100644 --- a/pkgs/applications/audio/gtkpod/default.nix +++ b/pkgs/applications/audio/gtkpod/default.nix @@ -11,6 +11,9 @@ stdenv.mkDerivation rec { url = "mirror://sourceforge/gtkpod/${pname}-${version}.tar.gz"; sha256 = "0xisrpx069f7bjkyc8vqxb4k0480jmx1wscqxr6cpq1qj6pchzd5"; }; + postPatch = '' + sed -i 's/which/type -P/' scripts/*.sh + ''; nativeBuildInputs = [ pkg-config wrapGAppsHook intltool ]; buildInputs = [ @@ -19,15 +22,17 @@ stdenv.mkDerivation rec { gdl gnome.adwaita-icon-theme gnome.anjuta ] ++ (with perlPackages; [ perl XMLParser ]); - patchPhase = '' - sed -i 's/which/type -P/' scripts/*.sh - ''; + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: .libs/autodetection.o:/build/gtkpod-2.1.5/libgtkpod/gtkpod_app_iface.h:248: multiple definition of + # `gtkpod_app'; .libs/gtkpod_app_iface.o:/build/gtkpod-2.1.5/libgtkpod/gtkpod_app_iface.h:248: first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; enableParallelBuilding = true; meta = with lib; { description = "GTK Manager for an Apple ipod"; - homepage = "http://gtkpod.sourceforge.net"; + homepage = "https://sourceforge.net/projects/gtkpod/"; license = licenses.gpl2Plus; platforms = platforms.linux; maintainers = [ maintainers.skeidel ]; diff --git a/pkgs/applications/audio/jamin/default.nix b/pkgs/applications/audio/jamin/default.nix index 2bd23b821f1..70cb4d7f110 100644 --- a/pkgs/applications/audio/jamin/default.nix +++ b/pkgs/applications/audio/jamin/default.nix @@ -15,6 +15,12 @@ stdenv.mkDerivation rec { buildInputs = [ fftwFloat gtk2 ladspaPlugins libjack2 liblo libxml2 ] ++ (with perlPackages; [ perl XMLParser ]); + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: jamin-preferences.o:/build/jamin-0.95.0/src/hdeq.h:64: multiple definition of + # `l_notebook1'; jamin-callbacks.o:/build/jamin-0.95.0/src/hdeq.h:64: first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + NIX_LDFLAGS = "-ldl"; postInstall = '' diff --git a/pkgs/applications/audio/mousai/default.nix b/pkgs/applications/audio/mousai/default.nix index f61b7c5b7b9..96d686864fb 100644 --- a/pkgs/applications/audio/mousai/default.nix +++ b/pkgs/applications/audio/mousai/default.nix @@ -15,7 +15,7 @@ , ninja , pkg-config , pulseaudio -, wrapGAppsHook +, wrapGAppsHook4 }: python3.pkgs.buildPythonApplication rec { @@ -39,6 +39,9 @@ python3.pkgs.buildPythonApplication rec { ]; postPatch = '' + substituteInPlace build-aux/meson/postinstall.py \ + --replace gtk-update-icon-cache gtk4-update-icon-cache + patchShebangs build-aux/meson ''; @@ -51,7 +54,7 @@ python3.pkgs.buildPythonApplication rec { meson ninja pkg-config - wrapGAppsHook + wrapGAppsHook4 ]; buildInputs = [ diff --git a/pkgs/applications/audio/musikcube/default.nix b/pkgs/applications/audio/musikcube/default.nix index 0557ee2e676..0894a6410d8 100644 --- a/pkgs/applications/audio/musikcube/default.nix +++ b/pkgs/applications/audio/musikcube/default.nix @@ -60,11 +60,11 @@ stdenv.mkDerivation rec { libmicrohttpd ncurses taglib - ] ++ lib.optional systemdSupport [ + ] ++ lib.optionals systemdSupport [ systemd - ] ++ lib.optional stdenv.isLinux [ + ] ++ lib.optionals stdenv.isLinux [ alsa-lib pulseaudio - ] ++ lib.optional stdenv.isDarwin [ + ] ++ lib.optionals stdenv.isDarwin [ Cocoa SystemConfiguration ]; diff --git a/pkgs/applications/audio/noisetorch/default.nix b/pkgs/applications/audio/noisetorch/default.nix index d08991a916b..067263032b0 100644 --- a/pkgs/applications/audio/noisetorch/default.nix +++ b/pkgs/applications/audio/noisetorch/default.nix @@ -33,6 +33,8 @@ buildGoModule rec { ''; meta = with lib; { + insecure = true; + knownVulnerabilities = [ "https://github.com/lawl/NoiseTorch/releases/tag/0.11.6" ]; description = "Virtual microphone device with noise supression for PulseAudio"; homepage = "https://github.com/lawl/NoiseTorch"; license = licenses.gpl3Plus; diff --git a/pkgs/applications/audio/pulseeffects-legacy/default.nix b/pkgs/applications/audio/pulseeffects-legacy/default.nix index fad17ac71fd..2a775369d26 100644 --- a/pkgs/applications/audio/pulseeffects-legacy/default.nix +++ b/pkgs/applications/audio/pulseeffects-legacy/default.nix @@ -108,7 +108,7 @@ in stdenv.mkDerivation rec { description = "Limiter, compressor, reverberation, equalizer and auto volume effects for Pulseaudio applications"; homepage = "https://github.com/wwmm/pulseeffects"; license = licenses.gpl3Plus; - maintainers = with maintainers; [ jtojnar ]; + maintainers = with maintainers; [ ]; platforms = platforms.linux; badPlatforms = [ "aarch64-linux" ]; }; diff --git a/pkgs/applications/audio/rhvoice/default.nix b/pkgs/applications/audio/rhvoice/default.nix index ca51001dd62..af2ce6ae25b 100644 --- a/pkgs/applications/audio/rhvoice/default.nix +++ b/pkgs/applications/audio/rhvoice/default.nix @@ -1,36 +1,50 @@ -{ stdenv, lib, pkg-config, fetchFromGitHub, sconsPackages -, glibmm, libpulseaudio, libao }: +{ lib +, stdenv +, fetchFromGitHub +, ensureNewerSourcesForZipFilesHook +, pkg-config +, scons +, glibmm +, libpulseaudio +, libao +, speechd +}: -let - version = "unstable-2018-02-10"; -in stdenv.mkDerivation { +stdenv.mkDerivation rec { pname = "rhvoice"; - inherit version; + version = "1.8.0"; src = fetchFromGitHub { - owner = "Olga-Yakovleva"; + owner = "RHVoice"; repo = "RHVoice"; - rev = "7a25a881b0465e47a12d8029b56f3b71a1d02312"; - sha256 = "1gkrlmv7msh9qlm0gkjqpl9gswghpclfdwszr1p85v8vk6m63v0b"; + rev = version; + fetchSubmodules = true; + hash = "sha256-G5886rjBaAp0AXcr07O0q7K1OXTayfIbd4zniKwDiLw="; }; + patches = [ + # SConstruct patch + # Scons creates an independent environment that assumes standard POSIX paths. + # The patch is needed to push the nix environment. + # - PATH + # - PKG_CONFIG_PATH, to find available (sound) libraries + # - RPATH, to link to the newly built libraries + ./honor_nix_environment.patch + ]; + nativeBuildInputs = [ - sconsPackages.scons_3_1_2 pkg-config + ensureNewerSourcesForZipFilesHook + pkg-config + scons ]; buildInputs = [ - glibmm libpulseaudio libao + glibmm + libpulseaudio + libao + speechd ]; - # SConstruct patch - # Scons creates an independent environment that assumes standard POSIX paths. - # The patch is needed to push the nix environment. - # - PATH - # - PKG_CONFIG_PATH, to find available (sound) libraries - # - RPATH, to link to the newly built libraries - - patches = [ ./honor_nix_environment.patch ]; - meta = { description = "A free and open source speech synthesizer for Russian language and others"; homepage = "https://github.com/Olga-Yakovleva/RHVoice/wiki"; diff --git a/pkgs/applications/audio/rhvoice/honor_nix_environment.patch b/pkgs/applications/audio/rhvoice/honor_nix_environment.patch index ed180c92deb..fed5a2ea5e1 100644 --- a/pkgs/applications/audio/rhvoice/honor_nix_environment.patch +++ b/pkgs/applications/audio/rhvoice/honor_nix_environment.patch @@ -1,14 +1,31 @@ diff --git a/SConstruct b/SConstruct -index 2421399..ba39254 100644 +index 3ad4d9a..fb02365 100644 --- a/SConstruct +++ b/SConstruct -@@ -147,6 +147,9 @@ def create_base_env(vars): +@@ -94,11 +94,8 @@ def CheckWiX(context): + return result + + def get_spd_module_dir(): +- env = Environment() +- try: +- return env.ParseConfig("pkg-config speech-dispatcher --variable=modulebindir", passthru) +- except: +- return False ++ # cannot write to ${speechd}/libexec/speech-dispatcher-modules ++ return os.path.join(os.environ["out"], "libexec/speech-dispatcher-modules") + + def validate_spd_version(key,val,env): + m=re.match(r"^\d+\.\d+",val) +@@ -208,9 +205,9 @@ def create_base_env(user_vars): env_args["package_name"]="RHVoice" env_args["CPPDEFINES"]=[("RHVOICE","1")] env=Environment(**env_args) +- if env["dev"]: +- env["prefix"]=os.path.abspath("local") +- env["RPATH"]=env.Dir("$libdir").abspath + env.PrependENVPath("PATH", os.environ["PATH"]) + env["ENV"]["PKG_CONFIG_PATH"]=os.environ["PKG_CONFIG_PATH"] -+ env["RPATH"]=env["libdir"] ++ env["RPATH"]=env.Dir("$libdir").abspath env["package_version"]=get_version(env["release"]) env.Append(CPPDEFINES=("PACKAGE",env.subst(r'\"$package_name\"'))) - env.Append(CPPDEFINES=("VERSION",env.subst(r'\"$package_version\"'))) + if env["PLATFORM"]=="win32": diff --git a/pkgs/applications/audio/sony-headphones-client/default.nix b/pkgs/applications/audio/sony-headphones-client/default.nix index e3e6573c432..127b2a5b1a9 100644 --- a/pkgs/applications/audio/sony-headphones-client/default.nix +++ b/pkgs/applications/audio/sony-headphones-client/default.nix @@ -19,26 +19,35 @@ stdenv.mkDerivation rec { cmakeFlags = [ "-Wno-dev" ]; + patches = [ ./gcc.patch ]; + + postPatch = '' + substituteInPlace Constants.h \ + --replace "UNKNOWN = -1" "// UNKNOWN removed since it doesn't fit in char" + ''; + installPhase = '' runHook preInstall install -Dm755 -t $out/bin SonyHeadphonesClient runHook postInstall ''; - desktopItems = [ (makeDesktopItem { - name = "SonyHeadphonesClient"; - exec = "SonyHeadphonesClient"; - icon = "SonyHeadphonesClient"; - desktopName = "Sony Headphones Client"; - comment = "A client recreating the functionality of the Sony Headphones app"; - categories = [ "Audio" "Mixer" ]; - }) ]; + desktopItems = [ + (makeDesktopItem { + name = "SonyHeadphonesClient"; + exec = "SonyHeadphonesClient"; + icon = "SonyHeadphonesClient"; + desktopName = "Sony Headphones Client"; + comment = "A client recreating the functionality of the Sony Headphones app"; + categories = [ "Audio" "Mixer" ]; + }) + ]; meta = with lib; { description = "A client recreating the functionality of the Sony Headphones app"; - homepage = "https://github.com/Plutoberth/SonyHeadphonesClient"; - license = licenses.mit; + homepage = "https://github.com/Plutoberth/SonyHeadphonesClient"; + license = licenses.mit; maintainers = with maintainers; [ stunkymonkey ]; - platforms = platforms.linux; + platforms = platforms.linux; }; } diff --git a/pkgs/applications/audio/sony-headphones-client/gcc.patch b/pkgs/applications/audio/sony-headphones-client/gcc.patch new file mode 100644 index 00000000000..31050e4789e --- /dev/null +++ b/pkgs/applications/audio/sony-headphones-client/gcc.patch @@ -0,0 +1,19 @@ +diff --git a/SingleInstanceFuture.h b/SingleInstanceFuture.h +index 8af733f..d2e6c49 100644 +--- a/SingleInstanceFuture.h ++++ b/SingleInstanceFuture.h +@@ -12,13 +12,13 @@ template <class T> + class SingleInstanceFuture : public std::future<T> + { + public: +- SingleInstanceFuture<T>() = default; ++ SingleInstanceFuture(void) = default; + template<class Func, class... Args> + void setFromAsync(Func func, Args&&... args) noexcept(false); + bool ready(); + + private: +- SingleInstanceFuture<T>(std::future<T> other); ++ SingleInstanceFuture(std::future<T> other); + SingleInstanceFuture<T> operator=(std::future<T>& other); + }; diff --git a/pkgs/applications/audio/sptlrx/default.nix b/pkgs/applications/audio/sptlrx/default.nix index ffe4741d179..4daab470473 100644 --- a/pkgs/applications/audio/sptlrx/default.nix +++ b/pkgs/applications/audio/sptlrx/default.nix @@ -1,4 +1,4 @@ -{ lib, buildGoModule, fetchFromGitHub, testers, sptlrx }: +{ lib, buildGoModule, fetchFromGitHub, nix-update-script, testers, sptlrx }: buildGoModule rec { pname = "sptlrx"; @@ -15,15 +15,19 @@ buildGoModule rec { ldflags = [ "-s" "-w" ]; - passthru.tests.version = testers.testVersion { - package = sptlrx; - # TODO Wrong version in `0.2.0`. Has been fixed upstream. - version = "v0.1.0"; + passthru = { + updateScript = nix-update-script { attrPath = pname; }; + tests.version = testers.testVersion { + package = sptlrx; + # TODO Wrong version in `0.2.0`. Has been fixed upstream. + version = "v0.1.0"; + }; }; meta = with lib; { description = "Spotify lyrics in your terminal"; homepage = "https://github.com/raitonoberu/sptlrx"; + changelog = "https://github.com/raitonoberu/sptlrx/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ MoritzBoehme ]; }; diff --git a/pkgs/applications/audio/ympd/default.nix b/pkgs/applications/audio/ympd/default.nix index 38c05276be4..218204d690a 100644 --- a/pkgs/applications/audio/ympd/default.nix +++ b/pkgs/applications/audio/ympd/default.nix @@ -18,11 +18,18 @@ stdenv.mkDerivation rec { sha256 = "1nvb19jd556v2h2bi7w4dcl507p3p8xvjkqfzrcsy7ccy3502brq"; }; + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: CMakeFiles/ympd.dir/src/mpd_client.c.o:(.bss+0x0): multiple definition of `mpd'; + # CMakeFiles/ympd.dir/src/ympd.c.o:(.bss+0x20): first defined here + # Should be fixed by pending https://github.com/notandy/ympd/pull/191 (does not apply as is). + NIX_CFLAGS_COMPILE = "-fcommon"; + nativeBuildInputs = [ cmake pkg-config ]; buildInputs = [ libmpdclient openssl ]; meta = with lib; { - homepage = "https://www.ympd.org"; + homepage = "https://github.com/notandy/ympd"; description = "Standalone MPD Web GUI written in C, utilizing Websockets and Bootstrap/JS"; maintainers = [ maintainers.siddharthist ]; platforms = platforms.unix; diff --git a/pkgs/applications/backup/pika-backup/borg-path.patch b/pkgs/applications/backup/pika-backup/borg-path.patch index c4ed649ffc9..faa4b76cec7 100644 --- a/pkgs/applications/backup/pika-backup/borg-path.patch +++ b/pkgs/applications/backup/pika-backup/borg-path.patch @@ -1,13 +1,22 @@ -diff --git a/src/borg/utils.rs b/src/borg/utils.rs -index 4e30913..30d7d6f 100644 ---- a/src/borg/utils.rs -+++ b/src/borg/utils.rs -@@ -223,7 +223,7 @@ impl BorgCall { +diff --git a/src/borg/process.rs b/src/borg/process.rs +index 63ea0ee..e3535e0 100644 +--- a/src/borg/process.rs ++++ b/src/borg/process.rs +@@ -203,7 +203,7 @@ impl BorgCall { } - pub fn cmd(&self) -> Command { -- let mut cmd = Command::new("borg"); -+ let mut cmd = Command::new("@borg@"); + pub fn cmd(&self) -> Result<process::Command> { +- let mut cmd = process::Command::new("borg"); ++ let mut cmd = process::Command::new("@borg@"); + + cmd.envs([self.set_password()?]); + +@@ -221,7 +221,7 @@ impl BorgCall { + } + + pub fn cmd_async(&self) -> Result<async_process::Command> { +- let mut cmd = async_process::Command::new("borg"); ++ let mut cmd = async_process::Command::new("@borg@"); + + cmd.envs([self.set_password()?]); - cmd.args(self.args()) - .stderr(Stdio::piped()) diff --git a/pkgs/applications/backup/pika-backup/default.nix b/pkgs/applications/backup/pika-backup/default.nix index 604456c6583..a8524dea91b 100644 --- a/pkgs/applications/backup/pika-backup/default.nix +++ b/pkgs/applications/backup/pika-backup/default.nix @@ -5,35 +5,34 @@ , rustPlatform , substituteAll , desktop-file-utils +, itstool , meson , ninja , pkg-config , python3 -, wrapGAppsHook +, wrapGAppsHook4 , borgbackup -, dbus -, gdk-pixbuf -, glib -, gtk3 -, libhandy +, gtk4 +, libadwaita +, libsecret }: stdenv.mkDerivation rec { pname = "pika-backup"; - version = "0.3.5"; + version = "0.4.0"; src = fetchFromGitLab { domain = "gitlab.gnome.org"; owner = "World"; repo = "pika-backup"; rev = "v${version}"; - sha256 = "sha256-8jT3n+bTNjhm64AMS24Ju+San75ytfqFXloH/TOgO1g="; + hash = "sha256-vQ0hlwsrY0WOUc/ppleE+kKRGHPt/ScEChXrkukln3U="; }; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - sha256 = "198bs4z7l22sh8ck7v46s45mj8zpfbg03n1xzc6pnafdd8hf3q15"; + hash = "sha256-IKUh5gkXTpmMToDaec+CpCIQqJjwJM2ZrmGQhZeTDsg="; }; patches = [ @@ -41,12 +40,10 @@ stdenv.mkDerivation rec { src = ./borg-path.patch; borg = "${borgbackup}/bin/borg"; }) - # Fix build with meson 0.61, can be removed on next release. - # https://gitlab.gnome.org/World/pika-backup/-/issues/156 - # https://github.com/mesonbuild/meson/issues/9441 (fetchpatch { - url = "https://gitlab.gnome.org/World/pika-backup/-/commit/54be149c88fd69fb9e74b7362fe7182863237869.patch"; - sha256 = "sha256-Tffxo5hlf/gSkp1GfyL4eHthX49tuTq6B+S53N8oA2M="; + name = "use-gtk4-update-icon-cache.patch"; + url = "https://gitlab.gnome.org/World/pika-backup/-/merge_requests/64.patch"; + hash = "sha256-AttGQGWealvTIvPwBl5M6FiC4Al/UD4/XckUAxM38SE="; }) ]; @@ -56,11 +53,12 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ desktop-file-utils + itstool meson ninja pkg-config python3 - wrapGAppsHook + wrapGAppsHook4 ] ++ (with rustPlatform; [ cargoSetupHook rust.cargo @@ -68,16 +66,14 @@ stdenv.mkDerivation rec { ]); buildInputs = [ - dbus - gdk-pixbuf - glib - gtk3 - libhandy + gtk4 + libadwaita + libsecret ]; meta = with lib; { description = "Simple backups based on borg"; - homepage = "https://wiki.gnome.org/Apps/PikaBackup"; + homepage = "https://apps.gnome.org/app/org.gnome.World.PikaBackup"; changelog = "https://gitlab.gnome.org/World/pika-backup/-/blob/v${version}/CHANGELOG.md"; license = licenses.gpl3Plus; maintainers = with maintainers; [ dotlambda ]; diff --git a/pkgs/applications/blockchains/alfis/default.nix b/pkgs/applications/blockchains/alfis/default.nix index d42ee291cf0..8eb52f26cdb 100644 --- a/pkgs/applications/blockchains/alfis/default.nix +++ b/pkgs/applications/blockchains/alfis/default.nix @@ -14,16 +14,16 @@ rustPlatform.buildRustPackage rec { pname = "alfis"; - version = "0.7.0"; + version = "0.7.3"; src = fetchFromGitHub { owner = "Revertron"; repo = "Alfis"; rev = "v${version}"; - sha256 = "sha256-lamobXaDY+v8NpoI+TuuBO5Cdol9+7VPhdmLEH6sZIo="; + sha256 = "sha256-P+usJCzf92WZ46mdaDbej59/RUzmFcMvlYXVe2VpgY0="; }; - cargoSha256 = "sha256-C5MCT4EG/lI4s2rVGSm9DgBu43FKpp3iTBbCf7N1jOA="; + cargoSha256 = "sha256-N5qHu0sCmIWtDYerWqMlD3qr8QtXLvEC7VqPEvnW2cw="; checkFlags = [ # these want internet access, disable them diff --git a/pkgs/applications/blockchains/btcdeb/default.nix b/pkgs/applications/blockchains/btcdeb/default.nix index 7f4e438173b..4f8a08333a8 100644 --- a/pkgs/applications/blockchains/btcdeb/default.nix +++ b/pkgs/applications/blockchains/btcdeb/default.nix @@ -7,14 +7,14 @@ with lib; stdenv.mkDerivation rec { - pname = "btcdeb-unstable"; - version = "200806"; + pname = "btcdeb"; + version = "unstable-2022-04-03"; src = fetchFromGitHub { owner = "bitcoin-core"; repo = "btcdeb"; - rev = "f6708c397c64894c9f9e31bea2d22285d9462de7"; - sha256 = "0qkmf89z2n7s95vhw3n9vh9dbi14zy4vqw3ffdh1w911jwm5ry3z"; + rev = "3ba1ec7f4d37f7d2ff0544403465004c6e12036e"; + hash = "sha256-l/PGXXX288mnoSFZ32t2Xd13dC6JCU5wDHoDxb+fcp0="; }; nativeBuildInputs = [ pkg-config autoreconfHook ]; @@ -22,7 +22,7 @@ stdenv.mkDerivation rec { meta = { description = "Bitcoin Script Debugger"; - homepage = "https://github.com/kallewoof/btcdeb"; + homepage = "https://github.com/bitcoin-core/btcdeb"; license = licenses.mit; maintainers = with maintainers; [ akru ]; platforms = platforms.unix; diff --git a/pkgs/applications/blockchains/cgminer/default.nix b/pkgs/applications/blockchains/cgminer/default.nix index a77924bb1f0..48a8d3ad930 100644 --- a/pkgs/applications/blockchains/cgminer/default.nix +++ b/pkgs/applications/blockchains/cgminer/default.nix @@ -39,6 +39,13 @@ stdenv.mkDerivation rec { "--enable-keccak" "--enable-bflsc"]; + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: cgminer-driver-modminer.o:/build/source/miner.h:285: + # multiple definition of `bitforce_drv'; cgminer-cgminer.o:/build/source/miner.h:285: + # first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + meta = with lib; { description = "CPU/GPU miner in c for bitcoin"; homepage = "https://github.com/ckolivas/cgminer"; diff --git a/pkgs/applications/blockchains/clightning/default.nix b/pkgs/applications/blockchains/clightning/default.nix index 2ac761edd00..2cf31ae3c95 100644 --- a/pkgs/applications/blockchains/clightning/default.nix +++ b/pkgs/applications/blockchains/clightning/default.nix @@ -21,11 +21,11 @@ let in stdenv.mkDerivation rec { pname = "clightning"; - version = "0.11.0.1"; + version = "0.11.1"; src = fetchurl { url = "https://github.com/ElementsProject/lightning/releases/download/v${version}/clightning-v${version}.zip"; - sha256 = "e2ad6eead19a0cd8869e291c27d318cf553bb015339c1f0e8d8b30e7bc0910d8"; + sha256 = "0vsh6gpv3458pfc5cggay9pw7bxjzyxpcniks9b2s3y1rxwk15xi"; }; # when building on darwin we need dawin.cctools to provide the correct libtool diff --git a/pkgs/applications/blockchains/ledger-live-desktop/default.nix b/pkgs/applications/blockchains/ledger-live-desktop/default.nix index 59166149e6a..84f6df6350f 100644 --- a/pkgs/applications/blockchains/ledger-live-desktop/default.nix +++ b/pkgs/applications/blockchains/ledger-live-desktop/default.nix @@ -2,12 +2,12 @@ let pname = "ledger-live-desktop"; - version = "2.40.4"; + version = "2.41.3"; name = "${pname}-${version}"; src = fetchurl { url = "https://github.com/LedgerHQ/${pname}/releases/download/v${version}/${pname}-${version}-linux-x86_64.AppImage"; - hash = "sha256-ktmGXEWoCrhx9hGau2VkQi0GMa53EqHV1wGtUk6kicc="; + hash = "sha256-Bh3wB5AAgY6l1W3UtWUHW+lJgJ0w6gw23WvEe3/Xs1g="; }; appimageContents = appimageTools.extractType2 { diff --git a/pkgs/applications/blockchains/lightwalletd/default.nix b/pkgs/applications/blockchains/lightwalletd/default.nix index 43af8491210..1cfd2071e86 100644 --- a/pkgs/applications/blockchains/lightwalletd/default.nix +++ b/pkgs/applications/blockchains/lightwalletd/default.nix @@ -1,14 +1,14 @@ -{ buildGoModule, fetchFromGitHub, lib }: +{ buildGoModule, fetchFromGitHub, lib, lightwalletd, testers }: buildGoModule rec { pname = "lightwalletd"; - version = "0.4.9"; + version = "0.4.10"; src = fetchFromGitHub { owner = "zcash"; repo = "lightwalletd"; - rev = "v${version}"; - sha256 = "sha256-IksA06V+mP7ZAXXFYLKLacxrDXeMXHAk5w4t7pmobq4="; + rev = "68789356fb1a75f62735a529b38389ef08ea7582"; + sha256 = "sha256-7gZhr6YMarGdgoGjg+oD4nZ/SAJ5cnhEDKmA4YMqJTo="; }; vendorSha256 = null; @@ -16,22 +16,28 @@ buildGoModule rec { ldflags = [ "-s" "-w" "-X github.com/zcash/lightwalletd/common.Version=v${version}" - "-X github.com/zcash/lightwalletd/common.GitCommit=v${version}" + "-X github.com/zcash/lightwalletd/common.GitCommit=${src.rev}" "-X github.com/zcash/lightwalletd/common.BuildDate=1970-01-01" "-X github.com/zcash/lightwalletd/common.BuildUser=nixbld" ]; - postFixup = '' - shopt -s extglob - cd $out/bin - rm !(lightwalletd) - ''; + excludedPackages = [ + "genblocks" + "testclient" + "zap" + ]; + + passthru.tests.version = testers.testVersion { + package = lightwalletd; + command = "lightwalletd version"; + version = "v${lightwalletd.version}"; + }; meta = with lib; { description = "A backend service that provides a bandwidth-efficient interface to the Zcash blockchain"; homepage = "https://github.com/zcash/lightwalletd"; maintainers = with maintainers; [ centromere ]; license = licenses.mit; - platforms = platforms.linux; + platforms = platforms.linux ++ platforms.darwin; }; } diff --git a/pkgs/applications/blockchains/lndconnect/default.nix b/pkgs/applications/blockchains/lndconnect/default.nix index 64a8da8b971..f1745655a56 100644 --- a/pkgs/applications/blockchains/lndconnect/default.nix +++ b/pkgs/applications/blockchains/lndconnect/default.nix @@ -1,18 +1,18 @@ -{ lib, buildGoPackage, fetchFromGitHub }: -buildGoPackage rec { +{ lib, buildGoModule, fetchFromGitHub, testVersion, lndconnect }: +buildGoModule rec { pname = "lndconnect"; - version = "0.2.0"; - - goPackagePath = "github.com/LN-Zap/lndconnect"; + version = "0.2.1"; src = fetchFromGitHub { owner = "LN-Zap"; repo = pname; rev = "v${version}"; - sha256 = "0zp23vp4i4csc6x1b6z39rqcmknxd508x6clr8ckdj2fwjwkyf5a"; + sha256 = "sha256-cuZkVeFUQq7+kQo/YjXCMPANUL5QooAWgegcoWo3M0c="; }; - goDeps = ./deps.nix; + vendorSha256 = "sha256-iE0nht3PH2R9pTyyrySk759untC7snGt3wTXk4/pjrU="; + + ldflags = [ "-s" "-w" ]; meta = with lib; { description = "Generate QRCode to connect apps to lnd Resources"; @@ -22,4 +22,3 @@ buildGoPackage rec { platforms = platforms.linux; }; } - diff --git a/pkgs/applications/blockchains/lndconnect/deps.nix b/pkgs/applications/blockchains/lndconnect/deps.nix deleted file mode 100644 index 5a31f0d5705..00000000000 --- a/pkgs/applications/blockchains/lndconnect/deps.nix +++ /dev/null @@ -1,129 +0,0 @@ -[ - { - goPackagePath = "github.com/Baozisoftware/qrcode-terminal-go"; - fetch = { - type = "git"; - url = "https://github.com/Baozisoftware/qrcode-terminal-go"; - rev = "c0650d8dff0f053901ff16185217b950d5e7743c"; - sha256 = "166h9zy9y7ygayhybg7d080hpdcf1mvkf3rwnq5lqg8i3cg71s7b"; - }; - } - { - goPackagePath = "github.com/btcsuite/btcd"; - fetch = { - type = "git"; - url = "https://github.com/btcsuite/btcd"; - rev = "e9a51e8dcd673c563a549676ebd4384b0318a9b7"; - sha256 = "053pdhhycls7cpygg4rhc0y2p937ni4cgxylgxd1zpwffqdjsxrs"; - }; - } - { - goPackagePath = "github.com/btcsuite/btclog"; - fetch = { - type = "git"; - url = "https://github.com/btcsuite/btclog"; - rev = "84c8d2346e9fc8c7b947e243b9c24e6df9fd206a"; - sha256 = "02dl46wcnfpg9sqvg0ipipkpnd7lrf4fnvb9zy56jqa7mfcwc7wk"; - }; - } - { - goPackagePath = "github.com/btcsuite/btcutil"; - fetch = { - type = "git"; - url = "https://github.com/btcsuite/btcutil"; - rev = "063c4115b3a9a7201e82447875383890698abcb6"; - sha256 = "12dpy5ipmd751xb71hcmrl9xyl89r5rflnrvypnz1irairfqwjwm"; - }; - } - { - goPackagePath = "github.com/glendc/go-external-ip"; - fetch = { - type = "git"; - url = "https://github.com/glendc/go-external-ip"; - rev = "c872357d968e33d5d9c47ea2c603f3b411150ecc"; - sha256 = "1h9cdhab4fapa2p1r8sgl1pxv4qi1zskw8x0pj93a81y03zzr2l1"; - }; - } - { - goPackagePath = "github.com/jessevdk/go-flags"; - fetch = { - type = "git"; - url = "https://github.com/jessevdk/go-flags"; - rev = "c17162fe8fd74f119ff938c5c67af63e3bac5ded"; - sha256 = "0byp3f79b0399n7g6nm59afb6gj9cknfqgfqadvpppv7lvnd34jf"; - }; - } - { - goPackagePath = "github.com/lightningnetwork/lnd"; - fetch = { - type = "git"; - url = "https://github.com/lightningnetwork/lnd"; - rev = "fd962d322ae2a913cc357dbb63382f22a9a0a6ce"; - sha256 = "0yj2vqb9qg5v0rbchkpwhhw51rp31z76zchhhbc837sz8l8lryra"; - }; - } - { - goPackagePath = "github.com/mattn/go-colorable"; - fetch = { - type = "git"; - url = "https://github.com/mattn/go-colorable"; - rev = "f6c00982823144337e56cdb71c712eaac151d29c"; - sha256 = "08y5c01bvyqxraj3wc0di80gbp87178rsshb74x0p3m7wwfv82l3"; - }; - } - { - goPackagePath = "github.com/mattn/go-isatty"; - fetch = { - type = "git"; - url = "https://github.com/mattn/go-isatty"; - rev = "cb30d6282491c185f77d9bec5d25de1bb61a06bc"; - sha256 = "0v59mv94acd2m72q8adhigxkx1vn38l5h0d8hp0nxga2v9f3v8kd"; - }; - } - { - goPackagePath = "github.com/miekg/dns"; - fetch = { - type = "git"; - url = "https://github.com/miekg/dns"; - rev = "7a5f1127f7f4e461b7400d6a9df1bc523e7448fd"; - sha256 = "1xwg6zwlxwkm1x121b3idir76h7wr9wmcdmg4vgj9hma903s63md"; - }; - } - { - goPackagePath = "github.com/skip2/go-qrcode"; - fetch = { - type = "git"; - url = "https://github.com/skip2/go-qrcode"; - rev = "da1b6568686e89143e94f980a98bc2dbd5537f13"; - sha256 = "0pghd6y2x8a5fqy4rjn4d8j5jcslb236naycdza5an7vyvinsgs9"; - }; - } - { - goPackagePath = "golang.org/x/crypto"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/crypto"; - rev = "5c72a883971a4325f8c62bf07b6d38c20ea47a6a"; - sha256 = "1cimmqpajys001x6yq8ycklc4w34y7iwrksv7ayv7m7fgzhcjn3d"; - }; - } - { - goPackagePath = "golang.org/x/net"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/net"; - rev = "05aa5d4ee32165add31ddef9d5d3946713e5dc5e"; - sha256 = "1v532mdb32h2gan6lc9ssya2v1lk6nzyzqvxn5nkbxij9x4v1jkl"; - }; - } - { - goPackagePath = "golang.org/x/sys"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/sys"; - rev = "9d91bd62050c7b3011b7df0d2a4daa0042684420"; - sha256 = "0d2jjd7r0zwakd1d2g2qm59w6jc6sgg0sal5gc626i8nn9adj2jg"; - }; - } -] - diff --git a/pkgs/applications/blockchains/mycrypto/default.nix b/pkgs/applications/blockchains/mycrypto/default.nix index ee7960a843b..fd2b3347afd 100644 --- a/pkgs/applications/blockchains/mycrypto/default.nix +++ b/pkgs/applications/blockchains/mycrypto/default.nix @@ -1,5 +1,4 @@ { lib, appimageTools, fetchurl, makeDesktopItem -, gsettings-desktop-schemas, gtk3 }: let @@ -29,10 +28,6 @@ let in appimageTools.wrapType2 rec { inherit name src; - profile = '' - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS - ''; - multiPkgs = null; # no p32bit needed extraPkgs = appimageTools.defaultFhsEnvArgs.multiPkgs; diff --git a/pkgs/applications/blockchains/nearcore/default.nix b/pkgs/applications/blockchains/nearcore/default.nix index f9f0bd0c69b..264d53fc56a 100644 --- a/pkgs/applications/blockchains/nearcore/default.nix +++ b/pkgs/applications/blockchains/nearcore/default.nix @@ -1,42 +1,60 @@ { rustPlatform, lib, fetchFromGitHub -, zlib, elfutils, openssl -, cmake, python3, pkg-config, protobuf, perl, llvmPackages +, zlib, openssl +, pkg-config, protobuf, llvmPackages }: rustPlatform.buildRustPackage rec { - #https://github.com/near/nearcore pname = "nearcore"; - version = "1.25.0"; + version = "1.26.0"; + + # https://github.com/near/nearcore/tags src = fetchFromGitHub { owner = "near"; repo = "nearcore"; # there is also a branch for this version number, so we need to be explicit rev = "refs/tags/${version}"; - sha256 = "sha256-7hiBqJLGIf+kNKJvMQ7KtGZm/SWLY3pT7YDlwbm3HDM="; + sha256 = "sha256-N3A+hy5I1/yJ3IN9gDw3m1IZ9qK8LNhn3fuXLMn23bg="; }; - cargoSha256 = "sha256-EGv4CibSHL9oTAdWK7d/SOzZWPcEB16hTWlWHjKU4wc="; + cargoSha256 = "sha256-g07liit048TSL73wFyDK+eKu33Z6fPJcJ+VeGgTtuS8="; + + postPatch = '' + substituteInPlace neard/build.rs \ + --replace 'get_git_version()?' '"nix:${version}"' + ''; + + CARGO_PROFILE_RELEASE_CODEGEN_UNITS = "1"; + CARGO_PROFILE_RELEASE_LTO = "fat"; + NEAR_RELEASE_BUILD = "release"; + + OPENSSL_NO_VENDOR = 1; # we want to link to OpenSSL provided by Nix # don't build SDK samples that require wasm-enabled rust - cargoBuildFlags = [ "-p" "neard" ]; + buildAndTestSubdir = "neard"; doCheck = false; # needs network - buildInputs = [ zlib elfutils openssl ]; + buildInputs = [ + zlib + openssl + ]; + nativeBuildInputs = [ - cmake - python3 pkg-config protobuf - perl ]; + # fat LTO requires ~3.4GB RAM + requiredSystemFeatures = [ "big-parallel" ]; + LIBCLANG_PATH = "${llvmPackages.libclang.lib}/lib"; BINDGEN_EXTRA_CLANG_ARGS = "-isystem ${llvmPackages.libclang.lib}/lib/clang/${lib.getVersion llvmPackages.clang}/include"; meta = with lib; { description = "Reference client for NEAR Protocol"; homepage = "https://github.com/near/nearcore"; - license = licenses.mit; - maintainers = with maintainers; [ mic92 ]; - platforms = platforms.unix; + license = licenses.gpl3; + maintainers = with maintainers; [ mic92 mikroskeem ]; + # only x86_64 is supported in nearcore because of sse4+ support, macOS might + # be also possible + platforms = [ "x86_64-linux" ]; }; } diff --git a/pkgs/applications/blockchains/wasabibackend/default.nix b/pkgs/applications/blockchains/wasabibackend/default.nix index 784b01192f7..df30302bc6c 100644 --- a/pkgs/applications/blockchains/wasabibackend/default.nix +++ b/pkgs/applications/blockchains/wasabibackend/default.nix @@ -10,13 +10,13 @@ buildDotnetModule rec { pname = "wasabibackend"; - version = "1.1.13.0"; + version = "1.1.13.1"; src = fetchFromGitHub { owner = "zkSNACKs"; repo = "WalletWasabi"; rev = "v${version}"; - sha256 = "sha256-zDOk8MurT5NXOr4kvm5mnsphY+eDFWuVBcpeTZpcHOo="; + sha256 = "sha256-Hwav7moG6XKAcR7L0Q7CtifP3zCNRfHIihlaFw+dzbk="; }; projectFile = "WalletWasabi.Backend/WalletWasabi.Backend.csproj"; diff --git a/pkgs/applications/blockchains/wasabiwallet/default.nix b/pkgs/applications/blockchains/wasabiwallet/default.nix index f8e20f1a05d..e3cea78629f 100644 --- a/pkgs/applications/blockchains/wasabiwallet/default.nix +++ b/pkgs/applications/blockchains/wasabiwallet/default.nix @@ -25,11 +25,11 @@ let in stdenv.mkDerivation rec { pname = "wasabiwallet"; - version = "1.1.12.9"; + version = "1.1.13.1"; src = fetchurl { url = "https://github.com/zkSNACKs/WalletWasabi/releases/download/v${version}/Wasabi-${version}.tar.gz"; - sha256 = "sha256-DtoLQbRXyR4xGm+M0xg9uj8wcbh1dOBJUG430OS8AS4="; + sha256 = "sha256-AtsNbUqEBQx0DPWR2LjNl7pdviYmvkv3bYKNBoeJHbw="; }; dontBuild = true; diff --git a/pkgs/applications/blockchains/zcash/default.nix b/pkgs/applications/blockchains/zcash/default.nix index a69393c2d2b..5a72462b142 100644 --- a/pkgs/applications/blockchains/zcash/default.nix +++ b/pkgs/applications/blockchains/zcash/default.nix @@ -1,18 +1,19 @@ { rust, rustPlatform, stdenv, lib, fetchFromGitHub, fetchpatch, autoreconfHook -, makeWrapper, cargo, pkg-config, curl, coreutils, boost178, db62, hexdump -, libsodium, libevent, utf8cpp, util-linux, withDaemon ? true, withMining ? true -, withUtils ? true, withWallet ? true, withZmq ? true, zeromq +, makeWrapper, cargo, pkg-config, curl, coreutils, boost179, db62, hexdump +, libsodium, libevent, testers, utf8cpp, util-linux, withDaemon ? true +, withMining ? true, withUtils ? true, withWallet ? true, withZmq ? true, zcash +, zeromq }: rustPlatform.buildRustPackage.override { stdenv = stdenv; } rec { pname = "zcash"; - version = "4.7.0"; + version = "5.0.0"; src = fetchFromGitHub { owner = "zcash"; repo = "zcash"; rev = "v${version}"; - sha256 = "sha256-yF+/QepSiZwsdZydWjvxDIFeFyJbJyqZmCdMyQHmrzI="; + sha256 = "sha256-5PlqFs2njqNeZgmNz0VKMWcRY5lPaF9oTsoh/uLEWi8="; }; prePatch = lib.optionalString stdenv.isAarch64 '' @@ -21,17 +22,10 @@ rustPlatform.buildRustPackage.override { stdenv = stdenv; } rec { --replace "linker = \"aarch64-linux-gnu-gcc\"" "" ''; - cargoPatches = [ - (fetchpatch { - url = "https://github.com/zcash/zcash/commit/61cd19a52d41d60c1987ecf269f7aa8e4d527310.diff"; - sha256 = "sha256-/7T2yCSVlRN7qfFjrZlfBNMlbVHb/KRjtUBY2xFr0mo="; - }) - ]; - - cargoSha256 = "sha256-+BLfO5OnCBqQTIqMXKJdoPCRgtENa+m0WOHKG9gkdMk="; + cargoSha256 = "sha256-eRRRjUbOieRC88wf+f1jAYvqGFmogBEla67NnImicEc="; nativeBuildInputs = [ autoreconfHook cargo hexdump makeWrapper pkg-config ]; - buildInputs = [ boost178 libevent libsodium utf8cpp ] + buildInputs = [ boost179 libevent libsodium utf8cpp ] ++ lib.optional withWallet db62 ++ lib.optional withZmq zeromq; @@ -50,7 +44,7 @@ rustPlatform.buildRustPackage.override { stdenv = stdenv; } rec { configureFlags = [ "--disable-tests" - "--with-boost-libdir=${lib.getLib boost178}/lib" + "--with-boost-libdir=${lib.getLib boost179}/lib" "CXXFLAGS=-I${lib.getDev utf8cpp}/include/utf8cpp" "RUST_TARGET=${rust.toRustTargetSpec stdenv.hostPlatform}" ] ++ lib.optional (!withWallet) "--disable-wallet" @@ -63,6 +57,12 @@ rustPlatform.buildRustPackage.override { stdenv = stdenv; } rec { # Requires hundreds of megabytes of zkSNARK parameters. doCheck = false; + passthru.tests.version = testers.testVersion { + package = zcash; + command = "zcashd --version"; + version = "v${zcash.version}"; + }; + postInstall = '' wrapProgram $out/bin/zcash-fetch-params \ --set PATH ${lib.makeBinPath [ coreutils curl util-linux ]} diff --git a/pkgs/applications/editors/emacs/elisp-packages/ement/default.nix b/pkgs/applications/editors/emacs/elisp-packages/ement/default.nix index d6e8de3efad..f89d0ce8007 100644 --- a/pkgs/applications/editors/emacs/elisp-packages/ement/default.nix +++ b/pkgs/applications/editors/emacs/elisp-packages/ement/default.nix @@ -13,13 +13,13 @@ trivialBuild { pname = "ement"; - version = "unstable-2022-05-05"; + version = "unstable-2022-05-14"; src = fetchFromGitHub { owner = "alphapapa"; repo = "ement.el"; - rev = "84739451afa8355360966dfa788d469d9dc4a8e3"; - sha256 = "sha256-XdegBKZfoKbFaMM/l8249VD9KKC5/4gQIK6ggPcoOaE="; + rev = "961d650377f9e7440e47c36c0386e899f5b2d86b"; + sha256 = "sha256-4KTSPgso7UvzCRKNFI3YaPR1t4DUwggO4KtBYLm0W4Y="; }; packageRequires = [ diff --git a/pkgs/applications/editors/emacs/elisp-packages/ement/handle-nil-images.patch b/pkgs/applications/editors/emacs/elisp-packages/ement/handle-nil-images.patch index 547fee16405..271e1cd2dba 100644 --- a/pkgs/applications/editors/emacs/elisp-packages/ement/handle-nil-images.patch +++ b/pkgs/applications/editors/emacs/elisp-packages/ement/handle-nil-images.patch @@ -1,8 +1,8 @@ -diff --git a/ement.el b/ement.el -index c9596a7..1b33045 100644 ---- a/ement.el -+++ b/ement.el -@@ -682,14 +682,15 @@ can cause undesirable underlining." +diff --git a/ement-lib.el b/ement-lib.el +index f0b2738..025a191 100644 +--- a/ement-lib.el ++++ b/ement-lib.el +@@ -644,14 +644,15 @@ can cause undesirable underlining." "Return a copy of IMAGE set to MAX-WIDTH and MAX-HEIGHT. IMAGE should be one as created by, e.g. `create-image'." ;; It would be nice if the image library had some simple functions to do this sort of thing. @@ -24,5 +24,5 @@ index c9596a7..1b33045 100644 + (image-property new-image :max-height) max-height) + new-image))) - ;;;;; Reading/writing sessions - + (defun ement--room-alias (room) + "Return latest m.room.canonical_alias event in ROOM." diff --git a/pkgs/applications/editors/lapce/default.nix b/pkgs/applications/editors/lapce/default.nix index d13b4c05302..49c3d5559aa 100644 --- a/pkgs/applications/editors/lapce/default.nix +++ b/pkgs/applications/editors/lapce/default.nix @@ -28,16 +28,16 @@ rustPlatform.buildRustPackage rec { pname = "lapce"; - version = "0.0.12"; + version = "0.1.0"; src = fetchFromGitHub { owner = "lapce"; repo = pname; rev = "v${version}"; - sha256 = "sha256-ZFQjQ5+G0b0Fgg3+du/drt+62rC/TCNR5MIdJXAkTrE="; + sha256 = "sha256-KSumy7M7VNUib4CZ0ikBboEFMzDQt4xW+aUFHOi+0pA="; }; - cargoSha256 = "sha256-sMTootPsenaWzLLFImo6HWC1pcm2uFupPhVWsUJp1Ak="; + cargoSha256 = "sha256-7SVTcH9/Ilq8HcpJJI0KFiQA076lR2CAIBwmTVgmnjE="; nativeBuildInputs = [ cmake diff --git a/pkgs/applications/editors/standardnotes/default.nix b/pkgs/applications/editors/standardnotes/default.nix index fa81414a7e7..e2e6bce72c4 100644 --- a/pkgs/applications/editors/standardnotes/default.nix +++ b/pkgs/applications/editors/standardnotes/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, appimageTools, autoPatchelfHook, desktop-file-utils -, fetchurl, libsecret, gtk3, gsettings-desktop-schemas }: +, fetchurl, libsecret }: let version = "3.11.1"; @@ -31,10 +31,6 @@ let in appimageTools.wrapType2 rec { inherit name src; - profile = '' - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS - ''; - extraPkgs = pkgs: with pkgs; [ libsecret ]; diff --git a/pkgs/applications/editors/vim/plugins/build-vim-plugin.nix b/pkgs/applications/editors/vim/plugins/build-vim-plugin.nix index 187c068c0f0..4773cfb9e43 100644 --- a/pkgs/applications/editors/vim/plugins/build-vim-plugin.nix +++ b/pkgs/applications/editors/vim/plugins/build-vim-plugin.nix @@ -3,14 +3,10 @@ , vim , vimCommandCheckHook , vimGenDocHook +, neovimRequireCheckHook }: rec { - addRtp = path: attrs: derivation: - derivation // { rtp = "${derivation}"; } // { - overrideAttrs = f: buildVimPlugin (attrs // f attrs); - }; - buildVimPlugin = attrs@{ name ? "${attrs.pname}-${attrs.version}", namePrefix ? "vimplugin-", @@ -24,7 +20,7 @@ rec { addonInfo ? null, ... }: - addRtp "${rtpPath}/${path}" attrs (stdenv.mkDerivation (attrs // { + let drv = stdenv.mkDerivation (attrs // { name = namePrefix + name; # dont move the doc folder since vim expects it @@ -44,7 +40,10 @@ rec { runHook postInstall ''; - })); + }); + in drv.overrideAttrs(oa: { + rtp = "${drv}"; + }); buildVimPluginFrom2Nix = attrs: buildVimPlugin ({ # vim plugins may override this diff --git a/pkgs/applications/editors/vim/plugins/generated.nix b/pkgs/applications/editors/vim/plugins/generated.nix index d491bb7f805..4e35fd632b1 100644 --- a/pkgs/applications/editors/vim/plugins/generated.nix +++ b/pkgs/applications/editors/vim/plugins/generated.nix @@ -53,12 +53,12 @@ final: prev: Coqtail = buildVimPluginFrom2Nix { pname = "Coqtail"; - version = "2022-04-21"; + version = "2022-05-10"; src = fetchFromGitHub { owner = "whonore"; repo = "Coqtail"; - rev = "0b8f2408f96481a373f336b4405af03008e39a4e"; - sha256 = "1v36ndpx8jaipav30ailxpadvzk5qxmgphd1p0hck50mdngpynki"; + rev = "ba1659dc1e3e38cd59d5bef19a51bdcf704abce5"; + sha256 = "1zqj4j3y970kpr29kp2lx6ggd49d03dv6hxffg58v8kc1v3ibf14"; }; meta.homepage = "https://github.com/whonore/Coqtail/"; }; @@ -149,12 +149,12 @@ final: prev: LeaderF = buildVimPluginFrom2Nix { pname = "LeaderF"; - version = "2022-04-26"; + version = "2022-05-11"; src = fetchFromGitHub { owner = "Yggdroot"; repo = "LeaderF"; - rev = "2817a561495f19a37369c72a1685e3e1e4c3c09d"; - sha256 = "1xxsm1b2v5wdy4psjcggm4ssgdq2j8q9ds98j1ky8l7carj0qfwn"; + rev = "f1da1ca2a4a71e79f4a625f62d8973de5cd2fab9"; + sha256 = "1jny8r8fs0z1gdcb75r3in7jp9gl9mwc4wvjslb8qp8yh1ja0ddv"; }; meta.homepage = "https://github.com/Yggdroot/LeaderF/"; }; @@ -269,12 +269,12 @@ final: prev: SchemaStore-nvim = buildVimPluginFrom2Nix { pname = "SchemaStore.nvim"; - version = "2022-05-02"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "b0o"; repo = "SchemaStore.nvim"; - rev = "24e03a0e7c100336efdef5035eb6e59ac3f7ed4a"; - sha256 = "0hjysfszcaw2i2awkv0sbhnj0x5jcl7s6jmb279m7gcf7giwvghk"; + rev = "dc964c3caecd8f8fc477fc308187d47147b33d81"; + sha256 = "1z8g04d7hd4qxag2b9rqyzvxvg8xya98zsxyd2rll51n2hw22bk1"; }; meta.homepage = "https://github.com/b0o/SchemaStore.nvim/"; }; @@ -329,12 +329,12 @@ final: prev: SpaceVim = buildVimPluginFrom2Nix { pname = "SpaceVim"; - version = "2022-05-02"; + version = "2022-05-11"; src = fetchFromGitHub { owner = "SpaceVim"; repo = "SpaceVim"; - rev = "97b010245f42bda351fd050a3c6ccf7806b9b007"; - sha256 = "1plfcrigk1s2l8ig0y6vf7awidbdj3p985pzjl19nrv93g49d71f"; + rev = "48c57041f9b7ceeff3e3d476f4ddf2cfc8a9f321"; + sha256 = "0qfh948fykmbhvhlqs5zq1qglfl09wrnnrzssqfi8j8h64yqajnh"; }; meta.homepage = "https://github.com/SpaceVim/SpaceVim/"; }; @@ -486,12 +486,12 @@ final: prev: aerial-nvim = buildVimPluginFrom2Nix { pname = "aerial.nvim"; - version = "2022-05-02"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "stevearc"; repo = "aerial.nvim"; - rev = "8d2ef96e44768250a652826c6586005f40eeac7f"; - sha256 = "0lgn1p381bxr69j1bb2hfj1y51x941p9yjqfg8nd84ka1qy4hjyx"; + rev = "19e739139283c8ac5e2c147f870d2a038496688e"; + sha256 = "16h1kkyczqifw0d4lwfaq3smx5scsap1d2pv00kcmwvs56ws5sx9"; }; meta.homepage = "https://github.com/stevearc/aerial.nvim/"; }; @@ -522,12 +522,12 @@ final: prev: ale = buildVimPluginFrom2Nix { pname = "ale"; - version = "2022-05-02"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "dense-analysis"; repo = "ale"; - rev = "56399106fcf9d80d476307576bc307e67f0167e2"; - sha256 = "0mc125zrbipikxdffvcn39cqphz0y2lavsbsh4x4604af74va0dv"; + rev = "044a6c956bfb557ec6c6d37921db6ee11de879f9"; + sha256 = "1sz58bn0h65bkh29047ps8wm9fni0k9q2gmf69w7q5njlynk4ah9"; }; meta.homepage = "https://github.com/dense-analysis/ale/"; }; @@ -678,12 +678,12 @@ final: prev: aurora = buildVimPluginFrom2Nix { pname = "aurora"; - version = "2022-02-02"; + version = "2022-05-05"; src = fetchFromGitHub { owner = "ray-x"; repo = "aurora"; - rev = "d11266046077968bbc3d6ac37d81e069618cdedd"; - sha256 = "1hdycb9rc7kpcppwv332hmrnzx5g2jy5r0ckaynahwwbwbjiyjqh"; + rev = "315831585d8de6c7787eb05c5bea56f430c851e1"; + sha256 = "19w3qmk6q1dj4jnwmvmd1af2bjwrfjmfnsrmjim9qmv6w0c2pbav"; }; meta.homepage = "https://github.com/ray-x/aurora/"; }; @@ -714,12 +714,12 @@ final: prev: auto-session = buildVimPluginFrom2Nix { pname = "auto-session"; - version = "2022-04-21"; + version = "2022-05-06"; src = fetchFromGitHub { owner = "rmagatti"; repo = "auto-session"; - rev = "4b1c978c6fb73e1e59f988fe85cfa51347a86e8a"; - sha256 = "154s0kfhvmyvcbdmy62v00jlmnfgnkmv4ilwf8hig4qxn1376arw"; + rev = "7c9477614fb95b103c277a98bf3f588e337cd7ac"; + sha256 = "1d502bfkr6qxrqr0jxwngj22cz4bh7v36kakpb9g4qbxdd3h1r30"; }; meta.homepage = "https://github.com/rmagatti/auto-session/"; }; @@ -738,12 +738,12 @@ final: prev: awesome-vim-colorschemes = buildVimPluginFrom2Nix { pname = "awesome-vim-colorschemes"; - version = "2022-01-17"; + version = "2022-05-04"; src = fetchFromGitHub { owner = "rafi"; repo = "awesome-vim-colorschemes"; - rev = "9a28614941beec4539f82937d50df1a03bb70e0d"; - sha256 = "0fvb3r8176r030wnf1rvpd4dba8cz5506a3plp5j5h5gxpsyd27y"; + rev = "9f96bbdef5cb19daf58449f0fbb597af6fc4c2eb"; + sha256 = "1yqc0j2aq3aqyn924dn8d2pqxapn1w5wylgr1pc5mf0f7nl6qc94"; }; meta.homepage = "https://github.com/rafi/awesome-vim-colorschemes/"; }; @@ -762,12 +762,12 @@ final: prev: barbar-nvim = buildVimPluginFrom2Nix { pname = "barbar.nvim"; - version = "2022-02-22"; + version = "2022-05-10"; src = fetchFromGitHub { owner = "romgrk"; repo = "barbar.nvim"; - rev = "be65945626fb6bf6058cae61d5176d156f923c11"; - sha256 = "165ffjrwhhjdyssj96z4qn3fjys0dxwckpvjyzrpca2b2fag0cx2"; + rev = "9d024d646c3fa0281a5ddcf189e2a620010f43ff"; + sha256 = "05fh6992q7npnar82ijf67nf1c3rj6sxg2wk3ckb22qks2hxq8nd"; }; meta.homepage = "https://github.com/romgrk/barbar.nvim/"; }; @@ -870,36 +870,36 @@ final: prev: bufdelete-nvim = buildVimPluginFrom2Nix { pname = "bufdelete.nvim"; - version = "2022-04-12"; + version = "2022-05-07"; src = fetchFromGitHub { owner = "famiu"; repo = "bufdelete.nvim"; - rev = "96454aedf95f52393a28cfcfc76482895de014ee"; - sha256 = "0rr87wbqil2k2cia759kisllwcsbq0s3yhcl9h849qgd4gr2926h"; + rev = "93e71aabbc3d534d70bb5d1913778eb42afb96f9"; + sha256 = "0qzf6mmws0f1nmlk8m4pwfsbkkpq5nr024n9l2jvmchax63w1bds"; }; meta.homepage = "https://github.com/famiu/bufdelete.nvim/"; }; bufexplorer = buildVimPluginFrom2Nix { pname = "bufexplorer"; - version = "2022-03-21"; + version = "2022-05-03"; src = fetchFromGitHub { owner = "jlanzarotta"; repo = "bufexplorer"; - rev = "a81eb31192e3033eccedb61c842e274252038a04"; - sha256 = "06b0mfmys2ah1hkyfipv0chv138mmdlixc2l0377zhq8409i3k3c"; + rev = "1be66e253730fd186a5a789a67a337420f431a71"; + sha256 = "1k3x04xvsmqbvmmcg7hlv3jnwpv9qgmdvwjz0620xmspfk43m09x"; }; meta.homepage = "https://github.com/jlanzarotta/bufexplorer/"; }; bufferline-nvim = buildVimPluginFrom2Nix { pname = "bufferline.nvim"; - version = "2022-05-02"; + version = "2022-05-12"; src = fetchFromGitHub { owner = "akinsho"; repo = "bufferline.nvim"; - rev = "2d5266d14b7b5dbc54923469b4599f0349f7cedc"; - sha256 = "0i8k8paa23v0l011lvydcv45c4jnr8wfiiwyw16hhndfamcwhgfh"; + rev = "29d5789aa407e7105968c43dba566defd3ca96bd"; + sha256 = "0skrqpxszp2z2zv21vh2prxdyizps43qjyyy56rxs25cl6hrzb1j"; }; meta.homepage = "https://github.com/akinsho/bufferline.nvim/"; }; @@ -1038,12 +1038,12 @@ final: prev: cmp-buffer = buildVimPluginFrom2Nix { pname = "cmp-buffer"; - version = "2022-02-21"; + version = "2022-05-09"; src = fetchFromGitHub { owner = "hrsh7th"; repo = "cmp-buffer"; - rev = "d66c4c2d376e5be99db68d2362cd94d250987525"; - sha256 = "0n9mqrf4rzj784zhshxr2wqyhm99d9mzalxqnik7srkghjvc9l4a"; + rev = "12463cfcd9b14052f9effccbf1d84caa7a2d57f0"; + sha256 = "11fbxw8rrhypazd256qwjvf8gg0laqb9b4h9yqdgvwj810y6n6wg"; }; meta.homepage = "https://github.com/hrsh7th/cmp-buffer/"; }; @@ -1206,12 +1206,12 @@ final: prev: cmp-tabnine = buildVimPluginFrom2Nix { pname = "cmp-tabnine"; - version = "2022-04-04"; + version = "2022-05-12"; src = fetchFromGitHub { owner = "tzachar"; repo = "cmp-tabnine"; - rev = "1c6e5c55f3a879354891c59cf27da733890bfc88"; - sha256 = "1hmif83kl2h4zz4xqkxb0xc003wzlirr26znx0r1f8z54f1j1hik"; + rev = "30629b30791b42dcaadc7680cc5cb078a7a3075f"; + sha256 = "1zs6dmaxx0af62v32c5l7cpywq2sd8fiw8j102mc4pn3s0vdcbgm"; }; meta.homepage = "https://github.com/tzachar/cmp-tabnine/"; }; @@ -1374,12 +1374,12 @@ final: prev: coc-nvim = buildVimPluginFrom2Nix { pname = "coc.nvim"; - version = "2022-05-01"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "neoclide"; repo = "coc.nvim"; - rev = "83a5f083d7ed76899729f25063a5ab9c326e5f02"; - sha256 = "1pwi1l4h6hdr45z5lnw3mjbpr3jx6iipnaz5bla64cq7cgf98nw6"; + rev = "a1edaee28938ce266c2543e2552bc6ee1ad29ffa"; + sha256 = "132jvk2wf53qbn2qgnr0zjh7nw05lr91p2jhykam77gxkmgzazpq"; }; meta.homepage = "https://github.com/neoclide/coc.nvim/"; }; @@ -1398,12 +1398,12 @@ final: prev: codi-vim = buildVimPluginFrom2Nix { pname = "codi.vim"; - version = "2022-04-30"; + version = "2022-05-11"; src = fetchFromGitHub { owner = "metakirby5"; repo = "codi.vim"; - rev = "086593fbf5f0891c9fa93cf14453ad14a79d3ed0"; - sha256 = "0m8hgchb927kgcz65fkmk61w6ma5hvqfr221r7f9jbjzj49laaxd"; + rev = "4da94d813cfcd83434098a24a277d6be43f5bf50"; + sha256 = "0rr5i704bqw2w600jvgvxl35sx2gak2bbxz59wk7k7jyxrzbjam6"; }; meta.homepage = "https://github.com/metakirby5/codi.vim/"; }; @@ -1447,12 +1447,12 @@ final: prev: comment-nvim = buildVimPluginFrom2Nix { pname = "comment.nvim"; - version = "2022-04-27"; + version = "2022-05-12"; src = fetchFromGitHub { owner = "numtostr"; repo = "comment.nvim"; - rev = "cb0de89ba80b7cdb37b92e2a9e43b566f8834c7a"; - sha256 = "17pshx6jq82nfjn2w65i0d3zh53r5b07lc2bh2aqpm5x2c5bhn3h"; + rev = "40f5587789681b3453e4a27831b7d293e1c3da7b"; + sha256 = "1lbjqq3h6434gwzc0bmnz64xlkrkjc11nlya6kp4amb6ajj3bg9i"; }; meta.homepage = "https://github.com/numtostr/comment.nvim/"; }; @@ -1615,12 +1615,12 @@ final: prev: copilot-vim = buildVimPluginFrom2Nix { pname = "copilot.vim"; - version = "2022-04-09"; + version = "2022-05-09"; src = fetchFromGitHub { owner = "github"; repo = "copilot.vim"; - rev = "573da1aaadd7402c3ab22fb1ae6853db1dc82acb"; - sha256 = "1j2rva50rl8kn480b613z6a0xnfwkvyi4amg9n4r2l89dxdsni84"; + rev = "df203c1356b72032df32d7b0b5facb4895139b6e"; + sha256 = "18v21b314p4firiz0xhqnfl45g5wbcigiqq4ypnhf1lgwd6ngpqd"; }; meta.homepage = "https://github.com/github/copilot.vim/"; }; @@ -1639,12 +1639,12 @@ final: prev: coq_nvim = buildVimPluginFrom2Nix { pname = "coq_nvim"; - version = "2022-05-02"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "ms-jpq"; repo = "coq_nvim"; - rev = "b443ff20dd28d90231dad463bcdbf342e53d13f3"; - sha256 = "14a3942nphlqfr9s4cwx8fa1n1yj1rqhk65bbp6z7zaw7x8g7jmf"; + rev = "ca1c0df28b235bdce65ac87c0bed31da8f9e8be4"; + sha256 = "17g7qd44jx5l8903m2hk8ja4hl4n2x43b0wmzvlpgjmpvgvhskzm"; }; meta.homepage = "https://github.com/ms-jpq/coq_nvim/"; }; @@ -1759,24 +1759,24 @@ final: prev: dart-vim-plugin = buildVimPluginFrom2Nix { pname = "dart-vim-plugin"; - version = "2022-01-25"; + version = "2022-05-10"; src = fetchFromGitHub { owner = "dart-lang"; repo = "dart-vim-plugin"; - rev = "42e6f57f2404b882cb7e491d50e525f8a8eb7f1f"; - sha256 = "1lla0ldgayryib0868zl10dz6yy9dxa0k86fxl5sr6y0csfpi23z"; + rev = "ceecea7895e469fc998d383818b2107d97cec06a"; + sha256 = "1h2glyi5zyskc9ld6gz8p3k84npfg2b1in5rjv3hhwg6d14d6xd8"; }; meta.homepage = "https://github.com/dart-lang/dart-vim-plugin/"; }; dashboard-nvim = buildVimPluginFrom2Nix { pname = "dashboard-nvim"; - version = "2021-04-17"; + version = "2022-05-09"; src = fetchFromGitHub { owner = "glepnir"; repo = "dashboard-nvim"; - rev = "ba98ab86487b8eda3b0934b5423759944b5f7ebd"; - sha256 = "1gyk0n8ks7xyjqab0gb7yx4ypl9k7csfjgmha84hy7mz4h08fkxq"; + rev = "3b31a80513969752a8c53ff8b16a8e060404cf50"; + sha256 = "0gcjyywjdsigq7a4jmcg8zgj6na5zagncdgp2a5qs81sa962k798"; }; meta.homepage = "https://github.com/glepnir/dashboard-nvim/"; }; @@ -1867,12 +1867,12 @@ final: prev: deol-nvim = buildVimPluginFrom2Nix { pname = "deol.nvim"; - version = "2022-04-29"; + version = "2022-05-04"; src = fetchFromGitHub { owner = "Shougo"; repo = "deol.nvim"; - rev = "0bdb926d328765144dd788c062161c565dc38732"; - sha256 = "0c4dl37npass3n2dx6459dm1bk30fhy5yaphxjg897wz61xn622x"; + rev = "cb48ec3f1c119d68cf633757a236228e3d887bf1"; + sha256 = "0ckhcx6z1dqlvsaldy3961p3h4qvxgdqdp4i8xkqy4scjvaanvz0"; }; meta.homepage = "https://github.com/Shougo/deol.nvim/"; }; @@ -2145,12 +2145,12 @@ final: prev: diffview-nvim = buildVimPluginFrom2Nix { pname = "diffview.nvim"; - version = "2022-04-14"; + version = "2022-05-09"; src = fetchFromGitHub { owner = "sindrets"; repo = "diffview.nvim"; - rev = "2d1f45282587d565cc4d84112490bc944c0b491d"; - sha256 = "0cwp07igj131fp650wk6nh80kygvlf7h0r8p915jsyxfh9y06p7i"; + rev = "91e99ae14e9e6e360540007e6785146458a138da"; + sha256 = "1sghkg75y62rcc0jy7ra6rsmx05gxz4nv944i4lywn952vc49nd7"; }; meta.homepage = "https://github.com/sindrets/diffview.nvim/"; }; @@ -2181,12 +2181,12 @@ final: prev: dressing-nvim = buildVimPluginFrom2Nix { pname = "dressing.nvim"; - version = "2022-05-01"; + version = "2022-05-11"; src = fetchFromGitHub { owner = "stevearc"; repo = "dressing.nvim"; - rev = "a476efd3f372d6b5b0df431cac36911fb84c515e"; - sha256 = "1n15lzjma6mpaphx6ppmhsgvg51vbrp91qf3nssyvr5n2vpjhhfy"; + rev = "55e4ceae81d9169f46ea4452ce6e8c58cca00651"; + sha256 = "1i34pk9l76n8ianz9hww8kn7dnnzivv8sbyf0vf7w21r2bh1p1k4"; }; meta.homepage = "https://github.com/stevearc/dressing.nvim/"; }; @@ -2205,12 +2205,12 @@ final: prev: edge = buildVimPluginFrom2Nix { pname = "edge"; - version = "2022-04-27"; + version = "2022-05-04"; src = fetchFromGitHub { owner = "sainnhe"; repo = "edge"; - rev = "fb5a763f2591bed8d10562edbd0e64c88cc5e674"; - sha256 = "0p79ck2n94argr7k8glwpmmzf6945mh4gb23p5hd5m8a02ys7ax4"; + rev = "93e92e161edfca2cef1534efb88e2aa2138834d9"; + sha256 = "0y24hdaqq9dsfy4di0pql1zj7a7jj48m44nm2a1g1dsra8k94jm2"; }; meta.homepage = "https://github.com/sainnhe/edge/"; }; @@ -2291,12 +2291,12 @@ final: prev: everforest = buildVimPluginFrom2Nix { pname = "everforest"; - version = "2022-04-27"; + version = "2022-05-04"; src = fetchFromGitHub { owner = "sainnhe"; repo = "everforest"; - rev = "1e594a20ce382bcc55c0e3fd488e90ca68dffb32"; - sha256 = "1415759zc6fp39h0xzpb2d99m4xsh5ma84j6yv236zb0bavm88ah"; + rev = "f748681a3fac2496aedf694f5bd09a30f80cd3c0"; + sha256 = "0w9gv52y806bn7az9yl2anx7yiv2ildslw4rvj82v5ni0b6mq4j5"; }; meta.homepage = "https://github.com/sainnhe/everforest/"; }; @@ -2351,12 +2351,12 @@ final: prev: feline-nvim = buildVimPluginFrom2Nix { pname = "feline.nvim"; - version = "2022-04-12"; + version = "2022-05-06"; src = fetchFromGitHub { owner = "feline-nvim"; repo = "feline.nvim"; - rev = "79f5e9e5a76842b72f1814dcd4fc239a95ead391"; - sha256 = "1svj1464hlash4igbai9mdman7cvlb8rfiyyylm7yn4wh8c2xb3k"; + rev = "f63f17bc9b845dd4cca4112f243b551aea141ced"; + sha256 = "1l088yjqkjs8vfgc738qgbd8w72a4rni1bzk5wc9q2z8m1rzf7kr"; }; meta.homepage = "https://github.com/feline-nvim/feline.nvim/"; }; @@ -2399,12 +2399,12 @@ final: prev: fidget-nvim = buildVimPluginFrom2Nix { pname = "fidget.nvim"; - version = "2022-04-19"; + version = "2022-05-08"; src = fetchFromGitHub { owner = "j-hui"; repo = "fidget.nvim"; - rev = "956683191df04c5a401e1f1fb2e53b957fbcecaa"; - sha256 = "1hwkm19x8zccwcnq72b8jk6dcmhngsxqcs3c02sarr2n0vqwvip0"; + rev = "99b306167d1d305ca084e3bb475d6eadf32a365b"; + sha256 = "0pxxsz0g2qklnl16pfbv0178fd34ff2vvx4qwndwkfgx4qmlkj8q"; }; meta.homepage = "https://github.com/j-hui/fidget.nvim/"; }; @@ -2472,12 +2472,12 @@ final: prev: formatter-nvim = buildVimPluginFrom2Nix { pname = "formatter.nvim"; - version = "2022-04-26"; + version = "2022-05-12"; src = fetchFromGitHub { owner = "mhartington"; repo = "formatter.nvim"; - rev = "100af7c04f12b99d29fbca7dc1aa3d17301c54e9"; - sha256 = "082cp251ynznjk3ims389ljdww9786nh8kglydqpqh3sdvc7s0mp"; + rev = "fb814e0e18a2ced247c40736d395d15a2517486e"; + sha256 = "19dav8ajydd4b9ziw6l4k9pn3dpc2z6zh1sb8a1hxcv02xfc71xg"; }; meta.homepage = "https://github.com/mhartington/formatter.nvim/"; }; @@ -2496,12 +2496,12 @@ final: prev: friendly-snippets = buildVimPluginFrom2Nix { pname = "friendly-snippets"; - version = "2022-04-25"; + version = "2022-05-09"; src = fetchFromGitHub { owner = "rafamadriz"; repo = "friendly-snippets"; - rev = "6e0881ad5dfae8bcb160bb6704e1f5fe31be9938"; - sha256 = "1cyrqsc0jf1v6qxrd944x74803cck3nxddp1ac8rhl9yj8kz176w"; + rev = "4ef45d099453a26d23084a04ae7dced19e6d5ae5"; + sha256 = "0l3hkg97w26k01f4arifnnaws4m50b2phig2pq8kqr80rz5i0gk7"; }; meta.homepage = "https://github.com/rafamadriz/friendly-snippets/"; }; @@ -2568,24 +2568,24 @@ final: prev: fzf-lsp-nvim = buildVimPluginFrom2Nix { pname = "fzf-lsp.nvim"; - version = "2022-02-06"; + version = "2022-05-04"; src = fetchFromGitHub { owner = "gfanto"; repo = "fzf-lsp.nvim"; - rev = "b02056f3c4b9d64d876bbf0a58d20791345a9364"; - sha256 = "16n78ylicrd7lh41g5hvd9vnnhkwbvj28c190k5zvrblyyhipn93"; + rev = "13fec018f619a14f0fcc90d1ff32f235d3344315"; + sha256 = "1wmmahy62dk04dplf96qh9aqfamjr3nm1fn3ky5lbw6ij8kgk5y8"; }; meta.homepage = "https://github.com/gfanto/fzf-lsp.nvim/"; }; fzf-lua = buildVimPluginFrom2Nix { pname = "fzf-lua"; - version = "2022-05-07"; + version = "2022-05-12"; src = fetchFromGitHub { owner = "ibhagwan"; repo = "fzf-lua"; - rev = "b614a9d315512ec4ce9c1df41474e5ab8e12f7df"; - sha256 = "0gb7q4fbv3754ck44h6dd93dcy8j4czhhna1d2kgq21614xs303k"; + rev = "de7ac64e742c21afae5dae93e8207408fde5042c"; + sha256 = "14hqkwsg4sgah0nyxd08iqzl8aycy6hgxn7wnyk0xdpr0nkhlm24"; }; meta.homepage = "https://github.com/ibhagwan/fzf-lua/"; }; @@ -2676,12 +2676,12 @@ final: prev: git-blame-nvim = buildVimPluginFrom2Nix { pname = "git-blame.nvim"; - version = "2022-04-29"; + version = "2022-05-08"; src = fetchFromGitHub { owner = "f-person"; repo = "git-blame.nvim"; - rev = "0a7d27028b69525f2c6b6a3460029ed6cb291541"; - sha256 = "0mbvaasx82wcn37mrn20gb98g7prhav4ps1wyk46mirla350ikjl"; + rev = "8ab29dd555de8f1791a4d34f47f21c8a2fdae8be"; + sha256 = "1bknqk0xc85n9qc1mhg9w95yniyk0j9jq7pxc2wwdn5zrfig1vjw"; }; meta.homepage = "https://github.com/f-person/git-blame.nvim/"; }; @@ -2736,12 +2736,12 @@ final: prev: gitsigns-nvim = buildNeovimPluginFrom2Nix { pname = "gitsigns.nvim"; - version = "2022-05-02"; + version = "2022-05-12"; src = fetchFromGitHub { owner = "lewis6991"; repo = "gitsigns.nvim"; - rev = "ef153188e849bd317c00448755bc4182a2bd495d"; - sha256 = "1pysiqgkp34kmpf4fkyjqih0rrq3mscrh9z27mzfhy2zhky8pikp"; + rev = "ffd06e36f6067935d8cb9793905dd2e84e291310"; + sha256 = "00lm0685mwrm4c4r4vprb0ksmylnrlz8silghaqdg80zlhbn729v"; }; meta.homepage = "https://github.com/lewis6991/gitsigns.nvim/"; }; @@ -2772,12 +2772,12 @@ final: prev: glow-nvim = buildVimPluginFrom2Nix { pname = "glow.nvim"; - version = "2022-04-13"; + version = "2022-05-11"; src = fetchFromGitHub { owner = "ellisonleao"; repo = "glow.nvim"; - rev = "0c76518e440f2ea4dbadd87beec8eea4ce030f17"; - sha256 = "093qa13dd32rn8r50pw3s65186ch2i9wawf1dwylqymjn1afnqbk"; + rev = "da265c328f5e4f102dbdbb1a0fd8627afdaf0320"; + sha256 = "1pmj8rjhf80jrgxp8iim9i36qqc6jwx8c73z6nqs6nkmnccychih"; }; meta.homepage = "https://github.com/ellisonleao/glow.nvim/"; }; @@ -2868,24 +2868,24 @@ final: prev: gruvbox-material = buildVimPluginFrom2Nix { pname = "gruvbox-material"; - version = "2022-04-27"; + version = "2022-05-04"; src = fetchFromGitHub { owner = "sainnhe"; repo = "gruvbox-material"; - rev = "3d664943daf65bf99390a52c5dbc557f87fac552"; - sha256 = "08zh5rc9p6svmds57gvvkk12nadd56ysx8xrhsjxbn3cdxag86gj"; + rev = "f943521890297076cdcd629182a0405f6b9a83f0"; + sha256 = "06x45ygxmqsgxrghvc4l6zdf1waxrwg3lk7m0lq4sh6nygdzhw1h"; }; meta.homepage = "https://github.com/sainnhe/gruvbox-material/"; }; gruvbox-nvim = buildVimPluginFrom2Nix { pname = "gruvbox.nvim"; - version = "2022-04-26"; + version = "2022-05-12"; src = fetchFromGitHub { owner = "ellisonleao"; repo = "gruvbox.nvim"; - rev = "cf1b07f07673b5c2f9e3903b5fc4c2f7bc7d1123"; - sha256 = "1pr91d8qsii9z5ff4gw766nf4v9r06ym15hk5y3z293bsd6hfns8"; + rev = "72930977a442a2de2592ed39168c018bef90e086"; + sha256 = "1k6rbn4ksmgi36f3zqlz52c99x3ilpjmv6q3y93j5kp2lxp1yz6r"; }; meta.homepage = "https://github.com/ellisonleao/gruvbox.nvim/"; }; @@ -2916,12 +2916,12 @@ final: prev: harpoon = buildVimPluginFrom2Nix { pname = "harpoon"; - version = "2022-04-05"; + version = "2022-05-08"; src = fetchFromGitHub { owner = "ThePrimeagen"; repo = "harpoon"; - rev = "28762aa04d6395538e26e1efff5213b26720e68f"; - sha256 = "0c2fpwm8v2fzkg8rq7lhpv8lzm614y4x6n2xp612sj824jm7aj03"; + rev = "d3d3d22b6207f46f8ca64946f4d781e975aec0fc"; + sha256 = "0vc14gg4ll4ghmvyqvzij9pkvm30sml61nhs7pbpw3qq5mfizb7z"; }; meta.homepage = "https://github.com/ThePrimeagen/harpoon/"; }; @@ -3108,24 +3108,24 @@ final: prev: incsearch-vim = buildVimPluginFrom2Nix { pname = "incsearch.vim"; - version = "2017-11-24"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "haya14busa"; repo = "incsearch.vim"; - rev = "25e2547fb0566460f5999024f7a0de7b3775201f"; - sha256 = "05v0d9b5sm4d1bvhb01jk6s7brlli2xc16hvzr6gik1nm1ks6ai1"; + rev = "c83de6d1ac31d173d7c3ffee0ad61dc643ee4f08"; + sha256 = "0vlj9hdy4d1p06mnxjpdz4mjqvbsgy5rp4l8k87wbs2b5x8008yj"; }; meta.homepage = "https://github.com/haya14busa/incsearch.vim/"; }; indent-blankline-nvim = buildVimPluginFrom2Nix { pname = "indent-blankline.nvim"; - version = "2022-04-15"; + version = "2022-05-10"; src = fetchFromGitHub { owner = "lukas-reineke"; repo = "indent-blankline.nvim"; - rev = "045d9582094b27f5ae04d8b635c6da8e97e53f1d"; - sha256 = "0wxkvx1xy7p4872fh9ydsnnqlpwm9x3afwakgxv38l9vmk5mpid4"; + rev = "8567ac8ccd19ee41a6ec55bf044884799fa3f56b"; + sha256 = "0gbdgn8031i4wgl5w2halaxjir39710n5cs8997cf3fhjj8zk5ss"; }; meta.homepage = "https://github.com/lukas-reineke/indent-blankline.nvim/"; }; @@ -3289,24 +3289,24 @@ final: prev: julia-vim = buildVimPluginFrom2Nix { pname = "julia-vim"; - version = "2022-03-23"; + version = "2022-05-06"; src = fetchFromGitHub { owner = "JuliaEditorSupport"; repo = "julia-vim"; - rev = "a2c96eda9d5b0dde03d2e22d0888e40426cd38dd"; - sha256 = "1x9f3gd4bgj3f1c75bp58mvaxll4rw55vznqckc0w0p1bcwq9faw"; + rev = "d743b99ff8321f4a80d21692bf536442d841bd55"; + sha256 = "07x3zayahbp2dm7lc5kvrpd0c4i8qivs1brbdv9b1rv9b45qx5nf"; }; meta.homepage = "https://github.com/JuliaEditorSupport/julia-vim/"; }; kanagawa-nvim = buildVimPluginFrom2Nix { pname = "kanagawa.nvim"; - version = "2022-04-21"; + version = "2022-05-04"; src = fetchFromGitHub { owner = "rebelot"; repo = "kanagawa.nvim"; - rev = "0ad738e7cc43514d35388c1caca13990d688aa5c"; - sha256 = "06gcdkh92i5znpn5gw1xyc82nf4kr2j1mi8d8pnajqyvvxyb8mca"; + rev = "50e7b43552072696d26757aff5f6307e2ab5e3ea"; + sha256 = "051asspplaw9m1iqv78gfv8dzg3c96c1mhhv5swih4r3zcbylhhi"; }; meta.homepage = "https://github.com/rebelot/kanagawa.nvim/"; }; @@ -3373,24 +3373,24 @@ final: prev: lazygit-nvim = buildVimPluginFrom2Nix { pname = "lazygit.nvim"; - version = "2022-04-15"; + version = "2022-05-10"; src = fetchFromGitHub { owner = "kdheepak"; repo = "lazygit.nvim"; - rev = "68407ff60c1abe56cecedd4bec41380df5070a21"; - sha256 = "080h4w55l36rvi4bb8z3bx2g41wp9lk08ihmz0jfmp7dzfgjszsi"; + rev = "1f9f372b9fc137b8123d12a78c22a26c0fa78f0a"; + sha256 = "1s4bpi7i86246p28pjk99rv1qj1gp7l7zwfch0f23nwnggm8s6pm"; }; meta.homepage = "https://github.com/kdheepak/lazygit.nvim/"; }; lean-nvim = buildVimPluginFrom2Nix { pname = "lean.nvim"; - version = "2022-05-02"; + version = "2022-05-09"; src = fetchFromGitHub { owner = "Julian"; repo = "lean.nvim"; - rev = "902eb7f75d664bccd251c38d7921570b05b47cdc"; - sha256 = "1dw8r7vl260baclf8ymq9zr9vxq8d8s6hjbnjs4xqliaza0g7pj3"; + rev = "725ff1f12e908001d2d42e9b06725cd8117e16f8"; + sha256 = "0i93k3izl9b8lsax7s1bz53jwkjsjh9iv2wgwk7bf9a6c34g9mq5"; }; meta.homepage = "https://github.com/Julian/lean.nvim/"; }; @@ -3529,24 +3529,24 @@ final: prev: lightline-vim = buildVimPluginFrom2Nix { pname = "lightline.vim"; - version = "2022-03-15"; + version = "2022-05-09"; src = fetchFromGitHub { owner = "itchyny"; repo = "lightline.vim"; - rev = "11931e2de42cb1a14887a002a874f0b2daf12bc2"; - sha256 = "1iyns1bm3wjr6z2hmc0p9j61vhprhax4f9qdqaf3w7vvgkhx1xj6"; + rev = "b02ef0d9f253dfc1cbb3f340b74998d7a4db0bf6"; + sha256 = "1rr5n23vvybfi3gbqljalqn0pnkwzzb4zqcz74jlz1dfyddsngah"; }; meta.homepage = "https://github.com/itchyny/lightline.vim/"; }; lightspeed-nvim = buildVimPluginFrom2Nix { pname = "lightspeed.nvim"; - version = "2022-04-04"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "ggandor"; repo = "lightspeed.nvim"; - rev = "cfde2b2fe0dafc5684780399961595357998f611"; - sha256 = "0zcippcfv87vcsbld0kka4mn2lixg0r6m2c82g9bssf304skfhfr"; + rev = "c5b93fc1d76a708cb698417326e04f4786a38d90"; + sha256 = "0lgk9i240mgzf7f3j3z93dkj00fi3rypn79zc60wqdyzhpg4r4lm"; }; meta.homepage = "https://github.com/ggandor/lightspeed.nvim/"; }; @@ -3577,12 +3577,12 @@ final: prev: lir-nvim = buildVimPluginFrom2Nix { pname = "lir.nvim"; - version = "2022-04-20"; + version = "2022-05-07"; src = fetchFromGitHub { owner = "tamago324"; repo = "lir.nvim"; - rev = "43b2fae50a49fbf435899201b0c687b72ab2cc8f"; - sha256 = "0ayq5nj6mmxc4pd6sf49wllkr1bkgvx6dsdy0hl2f3w20sn5bpba"; + rev = "4fc9dcaccb31301cb6ad938e1f40c211ab1115e2"; + sha256 = "08bn39smzdsh4whqk8icmf39fixnivw0bmvh9c90260mqj7329xr"; }; meta.homepage = "https://github.com/tamago324/lir.nvim/"; }; @@ -3613,12 +3613,12 @@ final: prev: litee-filetree-nvim = buildVimPluginFrom2Nix { pname = "litee-filetree.nvim"; - version = "2022-04-06"; + version = "2022-05-11"; src = fetchFromGitHub { owner = "ldelossa"; repo = "litee-filetree.nvim"; - rev = "2a59ba7c362d1e39b80baa47dc237a7eeca42ba0"; - sha256 = "1xw3p3jhyyggp82a8n99nqk9hnm8z6n84lclb2wjbma9a0xzk9kl"; + rev = "91d403620dafeb30410aa0ed0cc416c9b67d3233"; + sha256 = "1v70qlnwc59agxasvshr5691k00lvahks469pxh0kb0m072ainri"; }; meta.homepage = "https://github.com/ldelossa/litee-filetree.nvim/"; }; @@ -3637,12 +3637,12 @@ final: prev: litee-nvim = buildVimPluginFrom2Nix { pname = "litee.nvim"; - version = "2022-04-25"; + version = "2022-05-09"; src = fetchFromGitHub { owner = "ldelossa"; repo = "litee.nvim"; - rev = "2d257af35e90b1ee6017481b7fd82878d8f0e5ff"; - sha256 = "05cnx2py9jwkpv34fbqqwjq8gb2rx3rwp97a1klr8khk8sr59b5y"; + rev = "273bc3389434ff041e65f6c10edbf470763f6a8f"; + sha256 = "1gy6an081phxkzaz0r548lq1idlxwmpgcgxj41jc7cliplfm8h4m"; }; meta.homepage = "https://github.com/ldelossa/litee.nvim/"; }; @@ -3708,12 +3708,12 @@ final: prev: lsp_signature-nvim = buildVimPluginFrom2Nix { pname = "lsp_signature.nvim"; - version = "2022-05-01"; + version = "2022-05-09"; src = fetchFromGitHub { owner = "ray-x"; repo = "lsp_signature.nvim"; - rev = "6d160406f948a810c40304224a1255c8bba5a415"; - sha256 = "0hkj9z1ap6a3a4xbdq47cahx2j21pzwiss3fsarpwr6rjmcl62x3"; + rev = "db324e2ada5bb795d0016ec0ef2b4ae7f11d8904"; + sha256 = "1swvj79h7bgdm0wmb3a2a730y4gic1aivj371q7k8acc1s824j7d"; }; meta.homepage = "https://github.com/ray-x/lsp_signature.nvim/"; }; @@ -3732,24 +3732,24 @@ final: prev: lspsaga-nvim = buildVimPluginFrom2Nix { pname = "lspsaga.nvim"; - version = "2022-03-14"; + version = "2022-05-05"; src = fetchFromGitHub { owner = "tami5"; repo = "lspsaga.nvim"; - rev = "5309d75bd90ce5b1708331df3af1e971fa83a2b9"; - sha256 = "0xvlpjv69wf18nw5hbmmgbhs8ws4gfq5ny2vrncqaxcikr3gdmms"; + rev = "8dde091a61ab07f639baaa82b456d3508d0aa7e8"; + sha256 = "15cimji9x53ki1rrxw2y7vj5g4lp4b91hxljcp9jn9qhkjb7kj47"; }; meta.homepage = "https://github.com/tami5/lspsaga.nvim/"; }; lua-dev-nvim = buildVimPluginFrom2Nix { pname = "lua-dev.nvim"; - version = "2022-01-18"; + version = "2022-05-12"; src = fetchFromGitHub { owner = "folke"; repo = "lua-dev.nvim"; - rev = "a0ee77789d9948adce64d98700cc90cecaef88d5"; - sha256 = "10hc5iyqicbwjchwfyk7dz2wph0hz7ikjanvga9ncjk62qm2154f"; + rev = "f5c31936fe06fcbeb59b98f69f74f9c2f91abaec"; + sha256 = "0vwpi3cg0gv17w3bm2vlzspsms1rn2yjrzkq2zvf2f4slqq3rfpw"; }; meta.homepage = "https://github.com/folke/lua-dev.nvim/"; }; @@ -3768,24 +3768,24 @@ final: prev: lualine-nvim = buildVimPluginFrom2Nix { pname = "lualine.nvim"; - version = "2022-05-02"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "nvim-lualine"; repo = "lualine.nvim"; - rev = "45d07fc026400c211337a7ce1cb90e7b7a397e31"; - sha256 = "13np9iqh69w5mrzx8pi5db87cm5sjay5cfs9zb1lk0zxz3n4592d"; + rev = "a4e4517ac32441dd92ba869944741f0b5f468531"; + sha256 = "18q935aicddai7j99ln61wz1di6lhwzs11x8fxgq704kfap1l2fj"; }; meta.homepage = "https://github.com/nvim-lualine/lualine.nvim/"; }; luasnip = buildVimPluginFrom2Nix { pname = "luasnip"; - version = "2022-05-01"; + version = "2022-05-05"; src = fetchFromGitHub { owner = "l3mon4d3"; repo = "luasnip"; - rev = "1dbafec2379bd836bd09c4659d4c6e1a70eb380e"; - sha256 = "1y0jp1saggg59lpicyvjbklg3fb5qmbmh8q7gacx27zgp26hz66r"; + rev = "cc0086390c6cd2eaebae1834b115c891649ec95f"; + sha256 = "1kid880y097jl9ys2zs94fj66fq2dhbgjmd97blpdyhsa9m0mgnc"; }; meta.homepage = "https://github.com/l3mon4d3/luasnip/"; }; @@ -3804,12 +3804,12 @@ final: prev: lush-nvim = buildVimPluginFrom2Nix { pname = "lush.nvim"; - version = "2022-04-12"; + version = "2022-05-06"; src = fetchFromGitHub { owner = "rktjmp"; repo = "lush.nvim"; - rev = "87e9039138051ae75f76235924a273ac1a78cc3e"; - sha256 = "1plsm3xsf7bm709l6q341cbvm7na78a11b32n3j86j204zybdvbs"; + rev = "0c4acf666eb23acb5ffbd7f29526d801560b696a"; + sha256 = "1khpmlf90yhlqaapk2vkqkwzdjwsrrl3hfb209k3wl25588m9fm8"; }; meta.homepage = "https://github.com/rktjmp/lush.nvim/"; }; @@ -3840,12 +3840,12 @@ final: prev: marks-nvim = buildVimPluginFrom2Nix { pname = "marks.nvim"; - version = "2022-04-03"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "chentau"; repo = "marks.nvim"; - rev = "8e80a20a170434bc77decc97bc4364c3ba848925"; - sha256 = "0bah5xjrwq43ihw37gw8nxsj3qdh9fjqs9n7fkfhsg6hyp1qy4fc"; + rev = "56cfa45f9c20373ed90bc4271eae17ee0d452bae"; + sha256 = "0qc452ikyrrx28by0awm9jggv05zcph95kygjya1085g9win87l4"; }; meta.homepage = "https://github.com/chentau/marks.nvim/"; }; @@ -3864,12 +3864,12 @@ final: prev: material-nvim = buildVimPluginFrom2Nix { pname = "material.nvim"; - version = "2022-04-18"; + version = "2022-05-10"; src = fetchFromGitHub { owner = "marko-cerovac"; repo = "material.nvim"; - rev = "9679aaf52e709b892a2cac044e44b694ea027709"; - sha256 = "183afbjbblwx6r8ix1z3h7nq54fhbdf5w2nagwd850w90iq6kyic"; + rev = "255033d6db241cec11d81ee46d81b56122e2000a"; + sha256 = "1zn32xkbn37mqi41rh6d0186rxkq7ry5m1j7f8iliyhvd5gj1a1s"; }; meta.homepage = "https://github.com/marko-cerovac/material.nvim/"; }; @@ -3888,24 +3888,24 @@ final: prev: mini-nvim = buildVimPluginFrom2Nix { pname = "mini.nvim"; - version = "2022-05-01"; + version = "2022-05-12"; src = fetchFromGitHub { owner = "echasnovski"; repo = "mini.nvim"; - rev = "2bc924df80eaa788abd9af9ab9df446b10aa9b88"; - sha256 = "159n5sxg28lsvapdy59dxfhnjr7nb2wqy05pbcsdk90g4d7v43f7"; + rev = "1764bcfb1450ddef4eb7118a3c16464caad44439"; + sha256 = "0bayg5y0i23pz6x798qyx90l1w6wmf83kgdz9akxn6s5m82v8z4y"; }; meta.homepage = "https://github.com/echasnovski/mini.nvim/"; }; minimap-vim = buildVimPluginFrom2Nix { pname = "minimap.vim"; - version = "2022-04-15"; + version = "2022-05-09"; src = fetchFromGitHub { owner = "wfxr"; repo = "minimap.vim"; - rev = "3395cbd51bf042ef6d2cd714eb493eb7ed5fbb76"; - sha256 = "1bia6l9dhx0hk3jk38zgid8ljs28azrmz5xfp4mv5wa1g1kby0bl"; + rev = "5d44fe7a3a5f7041c4220a71e8fe83d8c8498042"; + sha256 = "04rqv8c5g1fs8pymlf2fcbm09k64bvpiqmjilf59m843vkvgk1xf"; }; meta.homepage = "https://github.com/wfxr/minimap.vim/"; }; @@ -4248,12 +4248,12 @@ final: prev: neogit = buildVimPluginFrom2Nix { pname = "neogit"; - version = "2022-04-13"; + version = "2022-05-09"; src = fetchFromGitHub { owner = "TimUntersberger"; repo = "neogit"; - rev = "c8dd268091ffcbcb673de59c5b37ff26a2eb24ed"; - sha256 = "0a5y5vlpfmx113byas8y91s0ng6xnxmjpva0jiv9wk419kgnk0f1"; + rev = "84d1eefe9d5af41cc3e5de02f2c9a263d5302781"; + sha256 = "03zrwgk0z534qzbzrf2s3bdk3kcjyrxjhr3xp0qsx7nlpx5ackby"; }; meta.homepage = "https://github.com/TimUntersberger/neogit/"; }; @@ -4308,12 +4308,12 @@ final: prev: neorg = buildVimPluginFrom2Nix { pname = "neorg"; - version = "2022-05-01"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "nvim-neorg"; repo = "neorg"; - rev = "633dfc9f0c3a00a32ee89d4ab826da2eecfe9bd8"; - sha256 = "13r17drh0xy2dibx2qq4r90zlkjfyp3mzfa6p7w29yr623ixbbs1"; + rev = "509947a6587a83aa755914eb95be605864bb108d"; + sha256 = "0qhq61kl3y282dm06z7kyzda5qpj9nk3mpvz5asc46vfvw98ijyh"; }; meta.homepage = "https://github.com/nvim-neorg/neorg/"; }; @@ -4368,12 +4368,12 @@ final: prev: neovim-ayu = buildVimPluginFrom2Nix { pname = "neovim-ayu"; - version = "2022-05-01"; + version = "2022-05-11"; src = fetchFromGitHub { owner = "Shatur"; repo = "neovim-ayu"; - rev = "cc64cadfd6e54967a7b01bac1a689239a20804ac"; - sha256 = "1rnlr14n3b6sxs0m64x5s42yq2bj8677bxyz4b479cdiq76gnyk2"; + rev = "bb0793b661acec468c472f20eb28dbe855428793"; + sha256 = "0nrky5mlh79xzgdbwibrs43yw317gaavhq0p7pfpxsxdxhfjw416"; }; meta.homepage = "https://github.com/Shatur/neovim-ayu/"; }; @@ -4488,12 +4488,12 @@ final: prev: nightfox-nvim = buildVimPluginFrom2Nix { pname = "nightfox.nvim"; - version = "2022-05-02"; + version = "2022-05-10"; src = fetchFromGitHub { owner = "EdenEast"; repo = "nightfox.nvim"; - rev = "25b3f3e46c87c51e4d8075d2e11f481628716363"; - sha256 = "1asz3wz9v47smwn6ahzmv8mdjbfazwbwzmcf9niy0jxva6b3qyrx"; + rev = "63a8eb64e8559e4c910e91025a2959c4b50b8c54"; + sha256 = "1kiryppcg1ng8n5m3b5qyzzw5vnisgpb1n6yw961yddxdzc8hcr4"; }; meta.homepage = "https://github.com/EdenEast/nightfox.nvim/"; }; @@ -4548,12 +4548,12 @@ final: prev: nord-nvim = buildVimPluginFrom2Nix { pname = "nord.nvim"; - version = "2022-02-17"; + version = "2022-05-11"; src = fetchFromGitHub { owner = "shaunsingh"; repo = "nord.nvim"; - rev = "1fdad275596f85bdc36c525b14697ff3a4f08bdf"; - sha256 = "1pq32gnpmkyqaxq0j5bqf6ik9vkrf2zkayvcvb6fv4vxaiv7w7hr"; + rev = "fb2c13625c711d3ab9303c0d9881437b5b280ba5"; + sha256 = "1pd8wsjp6jg2a8bvwn593sd9wf2czaxaq05xlgjzfwgc9k30mjig"; }; meta.homepage = "https://github.com/shaunsingh/nord.nvim/"; }; @@ -4572,36 +4572,36 @@ final: prev: nterm-nvim = buildVimPluginFrom2Nix { pname = "nterm.nvim"; - version = "2021-11-10"; + version = "2022-05-10"; src = fetchFromGitHub { owner = "jlesquembre"; repo = "nterm.nvim"; - rev = "14d16c83aa1d165724f7780f470c4dcde5addcb6"; - sha256 = "0y883fpjfk7lki8nfscxhfw0wr7xm1d22zgf52zqmc9pjznjz9my"; + rev = "cd7b7035d09144ee4ea49244bf5cb8ed68e499f8"; + sha256 = "0cvg03d1z7jkamg062ng731pdmckrdm611q24brr9ha1qc5q26gm"; }; meta.homepage = "https://github.com/jlesquembre/nterm.nvim/"; }; nui-nvim = buildVimPluginFrom2Nix { pname = "nui.nvim"; - version = "2022-04-08"; + version = "2022-05-06"; src = fetchFromGitHub { owner = "MunifTanjim"; repo = "nui.nvim"; - rev = "42552b3797c3452c5c94e0c84a04fbda9591b9d1"; - sha256 = "0ggiq9yvrkv2fff41qzvz82lsxxc8swlxfvv1n9g5am8zym2ssk1"; + rev = "abdbfab89f307151db83b1a5147cd390ef27ff99"; + sha256 = "0z49sfnsr7hmfr4vrd82f1m6kvswfqq31n4fsdmjy9h4qmjb0w5f"; }; meta.homepage = "https://github.com/MunifTanjim/nui.nvim/"; }; null-ls-nvim = buildVimPluginFrom2Nix { pname = "null-ls.nvim"; - version = "2022-05-01"; + version = "2022-05-09"; src = fetchFromGitHub { owner = "jose-elias-alvarez"; repo = "null-ls.nvim"; - rev = "3dbded7cfaf0591157280bc97d11407eeaef3ea9"; - sha256 = "0k74064x0k2l4k07zlfv3kl3qm3f7spj49rr9ahcwn0pni38y71c"; + rev = "dcad76eb1abb80cf3a27208823becbf62547abf8"; + sha256 = "1xsgmz1gzrz313whjm2ivc7px7xkcdqqi9gn466d5yyshzqvx3jq"; }; meta.homepage = "https://github.com/jose-elias-alvarez/null-ls.nvim/"; }; @@ -4644,12 +4644,12 @@ final: prev: nvim-autopairs = buildVimPluginFrom2Nix { pname = "nvim-autopairs"; - version = "2022-04-28"; + version = "2022-05-04"; src = fetchFromGitHub { owner = "windwp"; repo = "nvim-autopairs"; - rev = "63779ea99ed43ab22660ac6ae5b506a40bf41aeb"; - sha256 = "0lc03xjsamy8fpfwy6ag9r8cx1cp0my461l0wvbgznzr1qkq325y"; + rev = "aea913109d30c87df329ec9b8fea9aed6ef9f52a"; + sha256 = "0jhw4m552vfxilmn5cp67a9xz1w8jd6ixijyl2bsvp1j56qklfi6"; }; meta.homepage = "https://github.com/windwp/nvim-autopairs/"; }; @@ -4704,12 +4704,12 @@ final: prev: nvim-cmp = buildVimPluginFrom2Nix { pname = "nvim-cmp"; - version = "2022-05-02"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "hrsh7th"; repo = "nvim-cmp"; - rev = "bba6fb67fdafc0af7c5454058dfbabc2182741f4"; - sha256 = "1qkhynhaasplvk7argik7jqkl0jymi347xqbg1i7b1h4qp51xjpq"; + rev = "9a0c639ac2324e6e9ecc54dc22b1d32bb6c42ab9"; + sha256 = "06pza2xc5fzmsdz945mascmjd43k48agfq15ds91km8scpvpsx77"; }; meta.homepage = "https://github.com/hrsh7th/nvim-cmp/"; }; @@ -4788,24 +4788,24 @@ final: prev: nvim-dap = buildVimPluginFrom2Nix { pname = "nvim-dap"; - version = "2022-04-18"; + version = "2022-05-11"; src = fetchFromGitHub { owner = "mfussenegger"; repo = "nvim-dap"; - rev = "d6d8317ce9e096029150bc5844916347a9af6f45"; - sha256 = "0p5317hf7a9ky78dg68j4daj6z0nmhxiq4v52nfld54kz1f5dkmx"; + rev = "2249fcfd09cdc27c08e9d2f3be5268ba81db3378"; + sha256 = "0v0gz77dqyd485f9d43q101zcxnsyc13n9bl572xcrshdn6czncs"; }; meta.homepage = "https://github.com/mfussenegger/nvim-dap/"; }; nvim-dap-ui = buildVimPluginFrom2Nix { pname = "nvim-dap-ui"; - version = "2022-04-29"; + version = "2022-05-11"; src = fetchFromGitHub { owner = "rcarriga"; repo = "nvim-dap-ui"; - rev = "3eec5258c620e2b7b688676be8fb2e9a8ae436b2"; - sha256 = "1x7y49jzbj3s07pkdi842balj9wx0x1z4khgixxj7p03awcyngsm"; + rev = "e5c32746aa72e39267803fdf6934d79541d39f42"; + sha256 = "06igsddmjd27wj880vq9l9qq38x438ybrjvizn8dz98paypa6b1d"; }; meta.homepage = "https://github.com/rcarriga/nvim-dap-ui/"; }; @@ -4860,12 +4860,12 @@ final: prev: nvim-gdb = buildVimPluginFrom2Nix { pname = "nvim-gdb"; - version = "2022-05-02"; + version = "2022-05-12"; src = fetchFromGitHub { owner = "sakhnik"; repo = "nvim-gdb"; - rev = "d064ee481b2aec86133ebcd514c835a28776f9c5"; - sha256 = "1xxm69jndx8sgkip1f8n7k9nb697d1n7r13iyp1bcgllwir5f1mi"; + rev = "9c630705829fbe8c21a9379ae2be948560189d80"; + sha256 = "1cdc2r12k1nma37vicshy4kbk79ap8qj040rscxzl41z96ff8v0b"; }; meta.homepage = "https://github.com/sakhnik/nvim-gdb/"; }; @@ -4884,12 +4884,12 @@ final: prev: nvim-highlite = buildVimPluginFrom2Nix { pname = "nvim-highlite"; - version = "2022-04-29"; + version = "2022-05-12"; src = fetchFromGitHub { owner = "Iron-E"; repo = "nvim-highlite"; - rev = "16f6fe2ece750b9cbfacca3675e8e71cd4c19665"; - sha256 = "1i5v8z6gmj09lwi6mb6m6srskavqdwwv4iazajjrjwjv0wfzcdb9"; + rev = "1838e0a8418dfc87bc35ecb4a2bc594f032fda06"; + sha256 = "10ipn3xw4vlfkms0vg28gvwycs3hxpssc1gmp6hfj9z9ips976x1"; }; meta.homepage = "https://github.com/Iron-E/nvim-highlite/"; }; @@ -4920,12 +4920,12 @@ final: prev: nvim-jdtls = buildVimPluginFrom2Nix { pname = "nvim-jdtls"; - version = "2022-04-29"; + version = "2022-05-06"; src = fetchFromGitHub { owner = "mfussenegger"; repo = "nvim-jdtls"; - rev = "9010412f7de118168d2fe4ba97b578d0d76cc500"; - sha256 = "0jzz9av1k4msa9942p8g1f0cnlh0rdgb026s3xg4ksbdspc72d67"; + rev = "f582b5be2ae1fee2e5dc974cd9b979a1ab08cca6"; + sha256 = "0bfdp6xbq7qr7185m06ccfmln2gc24vc1215cxczm1bpyrh98ncq"; }; meta.homepage = "https://github.com/mfussenegger/nvim-jdtls/"; }; @@ -4968,36 +4968,36 @@ final: prev: nvim-lint = buildVimPluginFrom2Nix { pname = "nvim-lint"; - version = "2022-05-02"; + version = "2022-05-11"; src = fetchFromGitHub { owner = "mfussenegger"; repo = "nvim-lint"; - rev = "2c8f41f62d09b1e1068c3949661eba5bc0cea7ba"; - sha256 = "08syhj3wwrz7ivv492zjs02xcf42b3f1zhh26am8jr430k0l491d"; + rev = "0407c340a77380e4122dc349efa10fc846c928b4"; + sha256 = "1cagndfqdk505q18iq4wgmwav3hh04vmgxj7h8924v9ffj8wr0wx"; }; meta.homepage = "https://github.com/mfussenegger/nvim-lint/"; }; nvim-lsp-ts-utils = buildVimPluginFrom2Nix { pname = "nvim-lsp-ts-utils"; - version = "2022-04-04"; + version = "2022-05-09"; src = fetchFromGitHub { owner = "jose-elias-alvarez"; repo = "nvim-lsp-ts-utils"; - rev = "1826275ee0fc7fded65e8716b231db86a17080e3"; - sha256 = "129zjds8c69hahv307wnpdsjzfh29flsr99lkjma8dymsan96lb0"; + rev = "441385952278a1df5c91ba0d33e72c148d4654d3"; + sha256 = "199nf01hjxdalc76xhr306xyisvydjwqhhw40nx1krq9k3xy4z39"; }; meta.homepage = "https://github.com/jose-elias-alvarez/nvim-lsp-ts-utils/"; }; nvim-lspconfig = buildVimPluginFrom2Nix { pname = "nvim-lspconfig"; - version = "2022-04-28"; + version = "2022-05-12"; src = fetchFromGitHub { owner = "neovim"; repo = "nvim-lspconfig"; - rev = "21102d5e3b6ffc6929d60418581ac1a29ee9eddd"; - sha256 = "16hdgxzbb31253178kyy1j77qpskq80dlnfdfxj2bh761zc237rn"; + rev = "9ff2a06cebd4c8c3af5259d713959ab310125bec"; + sha256 = "1jsrbimif11jvkdbb7kz6c9iykbql5kzx4q4p0njfdqmvkn4ybdb"; }; meta.homepage = "https://github.com/neovim/nvim-lspconfig/"; }; @@ -5016,24 +5016,24 @@ final: prev: nvim-metals = buildVimPluginFrom2Nix { pname = "nvim-metals"; - version = "2022-04-27"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "scalameta"; repo = "nvim-metals"; - rev = "6bc7681b489b04feff394f832984d14510e97e47"; - sha256 = "0syq7sp836glngfjv6ykbwa14bwyn1zr929ma2sxs5jvqj5sbzvx"; + rev = "7c74065823e073749652749a7a89c78c81749acf"; + sha256 = "1rbmksw2ia8rvfjncvyy77bcx1zwpragw1k9fv7n50xhpjsgahvc"; }; meta.homepage = "https://github.com/scalameta/nvim-metals/"; }; nvim-neoclip-lua = buildVimPluginFrom2Nix { pname = "nvim-neoclip.lua"; - version = "2022-04-29"; + version = "2022-05-11"; src = fetchFromGitHub { owner = "AckslD"; repo = "nvim-neoclip.lua"; - rev = "f3ff1645de5d2fd46ac8ffe86e440b7f3ae1fd11"; - sha256 = "0ayi9sfdj1rcz9zlib65vbpaf9jyyfkiqsadiq6ldgwj9wx6vvi4"; + rev = "5520ad7b24b0c4bc0b5371eef2492e787aa59a3a"; + sha256 = "050p667xqi15fddvyr2p11xpsr9sl2mapfi5x6g9ca4x1738jgsv"; }; meta.homepage = "https://github.com/AckslD/nvim-neoclip.lua/"; }; @@ -5052,12 +5052,12 @@ final: prev: nvim-notify = buildVimPluginFrom2Nix { pname = "nvim-notify"; - version = "2022-05-01"; + version = "2022-05-04"; src = fetchFromGitHub { owner = "rcarriga"; repo = "nvim-notify"; - rev = "ebe78bea13b60640816658ae798a199bd5118eb1"; - sha256 = "0mzbqfc5kw4qa9hifjkzf3i1adz38g1lg9m6395y3bc6zry73dxp"; + rev = "d4a01eedeb2e6c3d453f3aa0f1b303dd8611dc71"; + sha256 = "0i0nikpin6fab7x72mzjsxsfgpyjnk4fhmw7il51i2igllxm5krs"; }; meta.homepage = "https://github.com/rcarriga/nvim-notify/"; }; @@ -5076,24 +5076,24 @@ final: prev: nvim-scrollview = buildVimPluginFrom2Nix { pname = "nvim-scrollview"; - version = "2022-04-13"; + version = "2022-05-05"; src = fetchFromGitHub { owner = "dstein64"; repo = "nvim-scrollview"; - rev = "ba6c48bf7919dd48a371e7b9c683b8858053e885"; - sha256 = "1pziragklk4zciy2q07llsa6ldqv090ynwclzrgwsv79l1rf9mzm"; + rev = "696b56fec29bad6daadafdc067955cd6010933bc"; + sha256 = "1j9i36ww0krq3k01l2rzd6qc29kc6w5cnl2lvb4m24n3k5rakjd4"; }; meta.homepage = "https://github.com/dstein64/nvim-scrollview/"; }; nvim-solarized-lua = buildVimPluginFrom2Nix { pname = "nvim-solarized-lua"; - version = "2022-01-22"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "ishan9299"; repo = "nvim-solarized-lua"; - rev = "995ae7e0baa4b5d42c094ffa7d6b3fe9459397c3"; - sha256 = "01dsbdlizckvw34hwzq7jkdhsv5008jzj9p140c177zv4qps2kll"; + rev = "a6af3a33cfe78c97f3adb2d86d3165bb25fb0ec3"; + sha256 = "1z7wi72dqrw0fgsnm0s7zmxb72cq564dqvvpl1cqgizf4ab2a42a"; }; meta.homepage = "https://github.com/ishan9299/nvim-solarized-lua/"; }; @@ -5124,38 +5124,38 @@ final: prev: nvim-tree-lua = buildVimPluginFrom2Nix { pname = "nvim-tree.lua"; - version = "2022-05-01"; + version = "2022-05-10"; src = fetchFromGitHub { owner = "kyazdani42"; repo = "nvim-tree.lua"; - rev = "483f1550d1c53f7dcf261d40af5f993ffcb8b9c3"; - sha256 = "1syhjcf9pawc70apbrhrddsxyabqqs60f0s7yc759v6qb64nqshr"; + rev = "82ec79aac5557c05728d88195fb0d008cacbf565"; + sha256 = "1xxxapb093mljrw8yr7qm2nij7j0639pfpyc3pv9zgz6ivd4d6xc"; }; meta.homepage = "https://github.com/kyazdani42/nvim-tree.lua/"; }; nvim-treesitter = buildVimPluginFrom2Nix { pname = "nvim-treesitter"; - version = "2022-05-01"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "nvim-treesitter"; repo = "nvim-treesitter"; - rev = "4067351ffd6e5cfd5527873f6db9845e04527b8b"; - sha256 = "0232nmbp82wjpv3npb4302pmsdfcfs67cgl7775d552zqfr2va9r"; + rev = "f1373051e554cc4642cda719c8023e4e8508eb2d"; + sha256 = "1jfcjwyp57scwj164pxzh376mh2i4nx2sxx0gpihl3r4m067gb84"; }; meta.homepage = "https://github.com/nvim-treesitter/nvim-treesitter/"; }; nvim-treesitter-context = buildVimPluginFrom2Nix { pname = "nvim-treesitter-context"; - version = "2022-01-12"; + version = "2022-05-12"; src = fetchFromGitHub { - owner = "romgrk"; + owner = "nvim-treesitter"; repo = "nvim-treesitter-context"; - rev = "b7d7aba81683c1cd76141e090ff335bb55332cba"; - sha256 = "113vvcisnypfbbnw9l9jq0avsh95p286gay3vb60ykfxjfbxsw1q"; + rev = "a7916523e8107a57021cabae51917b7dae844aa6"; + sha256 = "0pqc31yp8prq5gkblasyyhf4cxi4gkqglp0jmvqmsax46r82ffz1"; }; - meta.homepage = "https://github.com/romgrk/nvim-treesitter-context/"; + meta.homepage = "https://github.com/nvim-treesitter/nvim-treesitter-context/"; }; nvim-treesitter-pyfold = buildVimPluginFrom2Nix { @@ -5220,12 +5220,12 @@ final: prev: nvim-ts-rainbow = buildVimPluginFrom2Nix { pname = "nvim-ts-rainbow"; - version = "2022-04-24"; + version = "2022-05-09"; src = fetchFromGitHub { owner = "p00f"; repo = "nvim-ts-rainbow"; - rev = "a7767e2a1761078abb97f6516e45c56147e0952e"; - sha256 = "0ms95gxvydzf078y8mp2xqinm9bbk750nqc3ayyi26ipqba6f13x"; + rev = "190f8c83abb29504877b91c84ed3ceb6009ad3bd"; + sha256 = "1kq54zd1yx6q1ch886jcvhhydbxz9frky9wl60q00q62zgds8vmz"; }; meta.homepage = "https://github.com/p00f/nvim-ts-rainbow/"; }; @@ -5280,12 +5280,12 @@ final: prev: nvimdev-nvim = buildVimPluginFrom2Nix { pname = "nvimdev.nvim"; - version = "2022-04-24"; + version = "2022-05-04"; src = fetchFromGitHub { owner = "neovim"; repo = "nvimdev.nvim"; - rev = "2bfb1156112267e1ab98c6779fb15cf858bf11b9"; - sha256 = "1bdx2lmyh9zvqlqah2knkhdnh5n1fcnav4iw0v9ls4845q2qh4i4"; + rev = "ef38441a7149087366bfc05654e7cc21a83df60e"; + sha256 = "0chdbsixjw3l6bvqdhf2na2hdwm94lzb66mssafbhgpq328y97wk"; }; meta.homepage = "https://github.com/neovim/nvimdev.nvim/"; }; @@ -5316,12 +5316,12 @@ final: prev: octo-nvim = buildVimPluginFrom2Nix { pname = "octo.nvim"; - version = "2022-04-26"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "pwntester"; repo = "octo.nvim"; - rev = "622ab9feaa735dc0999e567183ce357f3dff080f"; - sha256 = "00prf7wb1p7daqly08h8l4ak5cmwbr76c5i40a8vfpn660wgj2zg"; + rev = "f5bd0c0336d6585a18b3ea95b4a40be068c74bbb"; + sha256 = "1cgkdrnk0yfrls5s4vjvkz0851c5877lmpnkh17nw1zn9rlds165"; }; meta.homepage = "https://github.com/pwntester/octo.nvim/"; }; @@ -5364,12 +5364,12 @@ final: prev: onedarkpro-nvim = buildVimPluginFrom2Nix { pname = "onedarkpro.nvim"; - version = "2022-04-26"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "olimorris"; repo = "onedarkpro.nvim"; - rev = "bca9cfd1dc2e4311659d9ab85e6e7f3c8309a4d7"; - sha256 = "10xl1hmrkzklsxlbgkazp62h97ff7pz3dczsgx7mk8bzs8cq5433"; + rev = "1f6e3bbb20f45648f5680606e5e5d5e881133f1f"; + sha256 = "05vhgrsn8fbmrzc5hn9k34qscvdvrq30rl61lgsw0wsn49685ck9"; }; meta.homepage = "https://github.com/olimorris/onedarkpro.nvim/"; }; @@ -5412,12 +5412,12 @@ final: prev: orgmode = buildVimPluginFrom2Nix { pname = "orgmode"; - version = "2022-05-02"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "nvim-orgmode"; repo = "orgmode"; - rev = "1a52ca239c726d62104fad012472c28a00cdcc22"; - sha256 = "17360m754y0fsxh95pl0zfl8jhhgw4hvk4991kxksrir0v3xsayz"; + rev = "675e58f6c7a889871911a5dc3e08491fe7b6b8a8"; + sha256 = "02czyx7gpd85ns2rndx52f5a07iq2qqm2zvhvfnmmmfpz11s26w6"; }; meta.homepage = "https://github.com/nvim-orgmode/orgmode/"; }; @@ -5556,12 +5556,12 @@ final: prev: plenary-nvim = buildNeovimPluginFrom2Nix { pname = "plenary.nvim"; - version = "2022-04-17"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "nvim-lua"; repo = "plenary.nvim"; - rev = "9069d14a120cadb4f6825f76821533f2babcab92"; - sha256 = "0pgzi0brqn4kcbv1k5d50xm0bcwaq50sk5jnj3q9ls2pvv7lb9a0"; + rev = "0a907364b5cd6e3438e230df7add8b9bb5ef6fd3"; + sha256 = "07k4vlpa1cxg4sxhwg0412ws13djspga16d67lqs545j5pfkgzr0"; }; meta.homepage = "https://github.com/nvim-lua/plenary.nvim/"; }; @@ -5834,12 +5834,12 @@ final: prev: refactoring-nvim = buildVimPluginFrom2Nix { pname = "refactoring.nvim"; - version = "2022-04-27"; + version = "2022-05-11"; src = fetchFromGitHub { owner = "theprimeagen"; repo = "refactoring.nvim"; - rev = "fef309f654906d931f2c714a77f5182fe70ada7d"; - sha256 = "15y5v702xa2ax35p4sdv5ylkpz06pnrfi0jfp2isbl6z79p6dqv3"; + rev = "33ac6f3bcfe97447037ded20291d40de34d8912c"; + sha256 = "1m0bd72pjay9mlmf0lhii7yi4mch77dlqwadlsiyv9qw07w1b1s4"; }; meta.homepage = "https://github.com/theprimeagen/refactoring.nvim/"; }; @@ -5870,12 +5870,12 @@ final: prev: rest-nvim = buildVimPluginFrom2Nix { pname = "rest.nvim"; - version = "2022-05-01"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "NTBBloodbath"; repo = "rest.nvim"; - rev = "e5f68db73276c4d4d255f75a77bbe6eff7a476ef"; - sha256 = "1gkml0101kai4cff2dlk8bv8rhsbiyr55hysvyv46gnxhisd8fy0"; + rev = "d902996de965d5d491f122e69ba9d03f9c673eb0"; + sha256 = "05vibdiig6lmiiixnnzc99adi6x4chkx02hqy51llahsdkg7369s"; }; meta.homepage = "https://github.com/NTBBloodbath/rest.nvim/"; }; @@ -5894,12 +5894,12 @@ final: prev: rnvimr = buildVimPluginFrom2Nix { pname = "rnvimr"; - version = "2022-04-08"; + version = "2022-05-10"; src = fetchFromGitHub { owner = "kevinhwang91"; repo = "rnvimr"; - rev = "65705df886624833105f6f146ac4cf8c4d426aad"; - sha256 = "1xc83qih6pw1g3qrkjzmn3bri0xn8cmqiqykxajd77ijxjaq9xsp"; + rev = "9c1e490e5ff882e2f930ec015946a0b5b300037e"; + sha256 = "1msynng52mn47iqfwwi0n6wl37psj67pvyyz9kdb4l9r89ahqxax"; }; meta.homepage = "https://github.com/kevinhwang91/rnvimr/"; }; @@ -5954,12 +5954,12 @@ final: prev: rust-tools-nvim = buildVimPluginFrom2Nix { pname = "rust-tools.nvim"; - version = "2022-05-01"; + version = "2022-05-12"; src = fetchFromGitHub { owner = "simrat39"; repo = "rust-tools.nvim"; - rev = "fe900a3d6028df4e7b7c89e8b0bf05b86af462ac"; - sha256 = "0mkbq5rk86jz5ckj1bg7z0s5x3j8kcldfc57gdk8r48bjkirds42"; + rev = "fbfcd9c4b7e40202ccf3db5035ac3c2b15a4413f"; + sha256 = "1plxhdr7j088nsq361zq35p4wmv9xd9xbgvi3mxr66mmmcm8k0pd"; }; meta.homepage = "https://github.com/simrat39/rust-tools.nvim/"; }; @@ -6123,12 +6123,12 @@ final: prev: slimv = buildVimPluginFrom2Nix { pname = "slimv"; - version = "2022-04-03"; + version = "2022-05-09"; src = fetchFromGitHub { owner = "kovisoft"; repo = "slimv"; - rev = "eb5856c616466b0f463e27a30965ea142003a552"; - sha256 = "1c4hprzqzxkf0yqkqc8261qr7xk817nm28cp38dw4z1rmjcg1l04"; + rev = "cba9910aaad90dd5f1cd508ad98adebe2271069c"; + sha256 = "16zxvwrgiv5fafwm0b75ici35c630466mxdk4dww978152bxahzn"; }; meta.homepage = "https://github.com/kovisoft/slimv/"; }; @@ -6171,12 +6171,12 @@ final: prev: sonokai = buildVimPluginFrom2Nix { pname = "sonokai"; - version = "2022-04-27"; + version = "2022-05-10"; src = fetchFromGitHub { owner = "sainnhe"; repo = "sonokai"; - rev = "9ad83caa675cb5160760bf85dcb951946c994572"; - sha256 = "02sp13fbz12xbw7jh5l1isim7q66l54xdl82y4x245xh7h6mkvnh"; + rev = "06b51526ad1db6359ec65ef5326a020bcae46ab9"; + sha256 = "0yhn3hgqgdp56qcdy18zzhbx8z54g6i39prrbckpxi7mfh0i2lmm"; }; meta.homepage = "https://github.com/sainnhe/sonokai/"; }; @@ -6195,12 +6195,12 @@ final: prev: space-vim = buildVimPluginFrom2Nix { pname = "space-vim"; - version = "2022-02-15"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "liuchengxu"; repo = "space-vim"; - rev = "637390b17a8cd7d154a0d90a5c07612f1538a28e"; - sha256 = "0f43mspfnch1ifqa9rgvc64dmk0hz3cirz8iicpszmdr0fphq3xs"; + rev = "36f61f8e7157750f0e93d496d68b46d606d313b7"; + sha256 = "0pm630rq3ihjr4ikfzh08cpi2ps0qasp6dm8rdrm3zdf5b58i1bz"; }; meta.homepage = "https://github.com/liuchengxu/space-vim/"; }; @@ -6267,12 +6267,12 @@ final: prev: splitjoin-vim = buildVimPluginFrom2Nix { pname = "splitjoin.vim"; - version = "2022-05-02"; + version = "2022-05-10"; src = fetchFromGitHub { owner = "AndrewRadev"; repo = "splitjoin.vim"; - rev = "64f68a641084d18903769ec138b8fab45477bd92"; - sha256 = "0if7z8yf75d5wamvlk76hxqvax7lrjmiiwdj4bf00j2pla5jydi8"; + rev = "37f5e795767ff14d2c8bf9cfb4998b9a0317feed"; + sha256 = "0klfadkqhv8a76qk074h9yll68wbabgsxbbhd4ba58sbv19qz35n"; fetchSubmodules = true; }; meta.homepage = "https://github.com/AndrewRadev/splitjoin.vim/"; @@ -6316,12 +6316,12 @@ final: prev: stabilize-nvim = buildVimPluginFrom2Nix { pname = "stabilize.nvim"; - version = "2022-03-11"; + version = "2022-05-09"; src = fetchFromGitHub { owner = "luukvbaal"; repo = "stabilize.nvim"; - rev = "786c818d7258b783afc192ac287b4365c5596dcf"; - sha256 = "07fd72p0qch0gfg92vcw3mlh7f8f1dii681qzpngnlk73ghq4ffw"; + rev = "174dfcd0197ebc7397c854ae8607f9c9e691eef5"; + sha256 = "1vi1gjkflrkm5fr432r23rbq474h26j9jyagdrkw6mkq3wgh4fcr"; }; meta.homepage = "https://github.com/luukvbaal/stabilize.nvim/"; }; @@ -6352,12 +6352,12 @@ final: prev: stylish-nvim = buildVimPluginFrom2Nix { pname = "stylish.nvim"; - version = "2022-02-11"; + version = "2022-02-01"; src = fetchFromGitHub { owner = "teto"; repo = "stylish.nvim"; - rev = "ea745ebf446410ef3d75f9890b2e7fd59be42e19"; - sha256 = "1kl2g32ls4s7kpr6395rdmsa7gdzkpfiypphmnxg8n75n0b0mwb3"; + rev = "279c18b7c35d1f6c650790b88e873e8a8a714f5e"; + sha256 = "09byh62f4ymkfpspk4sn5y0p9nsn3dphny94qcggfay1vddc3v93"; }; meta.homepage = "https://github.com/teto/stylish.nvim/"; }; @@ -6654,12 +6654,12 @@ final: prev: telescope-file-browser-nvim = buildVimPluginFrom2Nix { pname = "telescope-file-browser.nvim"; - version = "2022-04-20"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "nvim-telescope"; repo = "telescope-file-browser.nvim"; - rev = "ee355b83e00475e11dec82e3ea166f846a392018"; - sha256 = "1s39si5fifv6bvjk8kzs2zy18ap5q22pfqg68wn5icnp588498hz"; + rev = "28e75f6cdb63b4903035c8db2845aaddb89f1610"; + sha256 = "1imyjajrx4irxn3m2plpz9g0crkfyiq5amivhn2mqvawk1l05zy5"; }; meta.homepage = "https://github.com/nvim-telescope/telescope-file-browser.nvim/"; }; @@ -6823,12 +6823,12 @@ final: prev: telescope-nvim = buildVimPluginFrom2Nix { pname = "telescope.nvim"; - version = "2022-05-02"; + version = "2022-05-12"; src = fetchFromGitHub { owner = "nvim-telescope"; repo = "telescope.nvim"; - rev = "23e28d066a55a8e33bff33196f7bd65ea3ecbdbe"; - sha256 = "1yhc81k57ar58i0pwcwr28jsbkpcn8qqqjv95qcfi4hh14z75wfn"; + rev = "39b12d84e86f5054e2ed98829b367598ae53ab41"; + sha256 = "12krg8l13j4rqxqn9jx5nkpfpa3ffh2avv9z687ag7k1axvcak9h"; }; meta.homepage = "https://github.com/nvim-telescope/telescope.nvim/"; }; @@ -7004,12 +7004,12 @@ final: prev: toggleterm-nvim = buildVimPluginFrom2Nix { pname = "toggleterm.nvim"; - version = "2022-04-25"; + version = "2022-05-11"; src = fetchFromGitHub { owner = "akinsho"; repo = "toggleterm.nvim"; - rev = "6c7f5dbdd69bc5611a85194ddca83ac2c8ee84d6"; - sha256 = "1c9hhwb77h6f4g1agkqmp0zccpbbyany2sgack1k9373y4q4c131"; + rev = "ea21c3ef51868a564eeace357f4a3d429f93efb1"; + sha256 = "1y8nb5cdlghf37sl872gx1rd28r437vxz94w90ydijin8hswcdqi"; }; meta.homepage = "https://github.com/akinsho/toggleterm.nvim/"; }; @@ -7064,12 +7064,12 @@ final: prev: trouble-nvim = buildVimPluginFrom2Nix { pname = "trouble.nvim"; - version = "2022-03-18"; + version = "2022-05-09"; src = fetchFromGitHub { owner = "folke"; repo = "trouble.nvim"; - rev = "691d490cc4eadc430d226fa7d77aaa84e2e0a125"; - sha256 = "1d218xxz936q53aknazhnfxhy9ncjyq76dna6y5n87kxn9hzqix1"; + rev = "da61737d860ddc12f78e638152834487eabf0ee5"; + sha256 = "1aa45r9z8mghak8f5gymhm875rssi1afs92h0mpnn43y0j76xy31"; }; meta.homepage = "https://github.com/folke/trouble.nvim/"; }; @@ -7148,12 +7148,12 @@ final: prev: unicode-vim = buildVimPluginFrom2Nix { pname = "unicode.vim"; - version = "2022-04-18"; + version = "2022-05-05"; src = fetchFromGitHub { owner = "chrisbra"; repo = "unicode.vim"; - rev = "cc36bfa066d4a773e3152cc3c70051bc23ef2893"; - sha256 = "1npirr14khfmpvnvbmys98lxhy0yg5ah3270s85b9lp2xhxnkpps"; + rev = "176963d8e43dd54ff1582cb2374e731b51a7f5d5"; + sha256 = "030izymxcvs5hw8pqsmlqwxgzdbysh96q7qxk7mb2v15dh8qnv9d"; }; meta.homepage = "https://github.com/chrisbra/unicode.vim/"; }; @@ -7172,12 +7172,12 @@ final: prev: urlview-nvim = buildVimPluginFrom2Nix { pname = "urlview.nvim"; - version = "2022-04-25"; + version = "2022-05-07"; src = fetchFromGitHub { owner = "axieax"; repo = "urlview.nvim"; - rev = "3b637651d5f0de185a0ceac783582692e204b053"; - sha256 = "1hpm1mhj9n6fnrkr5vpl1x80xgx7f2ic5vy9ndybbsppk2l8jrp4"; + rev = "92a6ae6f33839222ce4ea58f5cdaf0a3f235caca"; + sha256 = "0y3l0py0cnvj876xi5kgc7mmbycj7s61mj29ipsmn9bnjvk008yb"; }; meta.homepage = "https://github.com/axieax/urlview.nvim/"; }; @@ -7244,12 +7244,12 @@ final: prev: vifm-vim = buildVimPluginFrom2Nix { pname = "vifm.vim"; - version = "2022-03-28"; + version = "2022-05-03"; src = fetchFromGitHub { owner = "vifm"; repo = "vifm.vim"; - rev = "069349e5dbba9fbb24b88ebedb89f728387fae79"; - sha256 = "1rrzhg8qpvgvcm9fkr05hmkw95gn37pys0h0d6rii6qhbx9z95vs"; + rev = "d6ae9ca80284bd7df38b102ba280f0d132129c0f"; + sha256 = "087ila6rskhd7vi1yqlqmq781gqajh69y4dk7n9f4sza75hb210x"; }; meta.homepage = "https://github.com/vifm/vifm.vim/"; }; @@ -7580,12 +7580,12 @@ final: prev: vim-airline = buildVimPluginFrom2Nix { pname = "vim-airline"; - version = "2022-04-12"; + version = "2022-05-06"; src = fetchFromGitHub { owner = "vim-airline"; repo = "vim-airline"; - rev = "be5bda1f1dbfa4e36b2adabaf3f423adfa66c336"; - sha256 = "1k0yv95i2kigggmh3dcg9rq6pkh7qcycsv9nm6jshgsfic8ly8n5"; + rev = "c4655701431a9c79704c827fd88a4783ec946879"; + sha256 = "1qsr3kkfx5vbhmnym0id2h9mph8bw6g75vwpqfi9vfmbg4fddh3l"; }; meta.homepage = "https://github.com/vim-airline/vim-airline/"; }; @@ -7724,12 +7724,12 @@ final: prev: vim-autoformat = buildVimPluginFrom2Nix { pname = "vim-autoformat"; - version = "2022-04-21"; + version = "2022-05-12"; src = fetchFromGitHub { owner = "vim-autoformat"; repo = "vim-autoformat"; - rev = "544596a21c54ee0888a1f30f3bb31d472432d7d9"; - sha256 = "19ridsf6vgiknagplfdmbsg23wnl48j7n48z8qa3372x1v30c92p"; + rev = "c833f1dd0398901f5ad3f5f0ec2e07975e246294"; + sha256 = "1vafpp3m75dd8c453zq6w8qnapw7h5kpbzdx2s5fpjdn9qrg2g87"; }; meta.homepage = "https://github.com/vim-autoformat/vim-autoformat/"; }; @@ -7952,12 +7952,12 @@ final: prev: vim-clap = buildVimPluginFrom2Nix { pname = "vim-clap"; - version = "2022-04-27"; + version = "2022-05-10"; src = fetchFromGitHub { owner = "liuchengxu"; repo = "vim-clap"; - rev = "7d1fb3baf5b92b707146262713f6fe30d49a2f15"; - sha256 = "0m7cgiysr95c1lssfsi84z1hhqv8bz32wsazk7jmxxn9j83696s5"; + rev = "5d0662d8d7e640a1ffb64b1b4dbbc41995391218"; + sha256 = "0bz6nrjsz1m2ibhbg4zc2z9slqfwnx5q6mc6favf9nw7j821s95g"; }; meta.homepage = "https://github.com/liuchengxu/vim-clap/"; }; @@ -8540,12 +8540,12 @@ final: prev: vim-eunuch = buildVimPluginFrom2Nix { pname = "vim-eunuch"; - version = "2022-05-01"; + version = "2022-05-06"; src = fetchFromGitHub { owner = "tpope"; repo = "vim-eunuch"; - rev = "73b5e3fccfb5295e38546318c0d3139874c25efb"; - sha256 = "1xqx80a1g9r3lxfxb1ahrbfzmm4r6azm8iyc3430nwqx4jg72pp2"; + rev = "39e0232f490322c5a2d9e24275872f28da496a93"; + sha256 = "1wp5x5vximysab4c97d7x7y0hnnmycfm9h8mxxzz291ra5yrbbr2"; }; meta.homepage = "https://github.com/tpope/vim-eunuch/"; }; @@ -8660,12 +8660,12 @@ final: prev: vim-floaterm = buildVimPluginFrom2Nix { pname = "vim-floaterm"; - version = "2022-02-15"; + version = "2022-05-05"; src = fetchFromGitHub { owner = "voldikss"; repo = "vim-floaterm"; - rev = "6244d1739aad6682c6c1d5db18c846c342af6e3e"; - sha256 = "1w0d93wm0xwg8wyvyzdibjmnd1py343mvvzj911byvnm1b52zp7h"; + rev = "ab7876f86c05c1935eb23a193f4f276132902ac1"; + sha256 = "10i6akvr1ib2lwh6xwjchmpjzdabj2qs05h8h1ww9mdycj4q1pli"; }; meta.homepage = "https://github.com/voldikss/vim-floaterm/"; }; @@ -8732,12 +8732,12 @@ final: prev: vim-fugitive = buildVimPluginFrom2Nix { pname = "vim-fugitive"; - version = "2022-04-26"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "tpope"; repo = "vim-fugitive"; - rev = "b7287bd5421da62986d9abf9131509b2c9f918e4"; - sha256 = "1pk1qlr7lcifffsxm8fqy34p9nizv0n5mc0rl7xb7pr5c98a4vzz"; + rev = "a8139d37b242c5bc5ceeddc4fcd7dddf2b2c2650"; + sha256 = "1n22hjg374rs1412v4yvn3jc5nzd2jfsk3vzhaf8i3zv4b6w2vf1"; }; meta.homepage = "https://github.com/tpope/vim-fugitive/"; }; @@ -8828,12 +8828,12 @@ final: prev: vim-gitgutter = buildVimPluginFrom2Nix { pname = "vim-gitgutter"; - version = "2022-04-25"; + version = "2022-05-04"; src = fetchFromGitHub { owner = "airblade"; repo = "vim-gitgutter"; - rev = "988a6dbad9a9777cd94aab18ba7821a41068685b"; - sha256 = "178jzjwqjd15b3gjdyiay5fw9sv6s7jbzj1sgqfwlg2gm3m7g2fi"; + rev = "719d4ec06a0fb0aa9f1dfaebcf4f9691e8dc3f73"; + sha256 = "1mdpds4xpjcwfsm6r9w65hxwjsxm7pcr3dnkfh6v8xx0kyflmijp"; }; meta.homepage = "https://github.com/airblade/vim-gitgutter/"; }; @@ -8852,12 +8852,12 @@ final: prev: vim-glsl = buildVimPluginFrom2Nix { pname = "vim-glsl"; - version = "2022-02-06"; + version = "2022-05-10"; src = fetchFromGitHub { owner = "tikhomirov"; repo = "vim-glsl"; - rev = "28a6dfbcd96095226bee90985b7f12c5679dbbb6"; - sha256 = "051f0q5bkgp77pz0izh5mvqsmxy0rzlvriwq4j7qzslqk7i850p2"; + rev = "bfd330a271933c3372fcfa8ce052970746c8e9dd"; + sha256 = "0nqpg95mh5z0wmiqvc8cfzq1gb99ximc1gbz9bv3x7239f66z5vn"; }; meta.homepage = "https://github.com/tikhomirov/vim-glsl/"; }; @@ -8948,24 +8948,24 @@ final: prev: vim-gutentags = buildVimPluginFrom2Nix { pname = "vim-gutentags"; - version = "2020-05-22"; + version = "2022-05-12"; src = fetchFromGitHub { owner = "ludovicchabant"; repo = "vim-gutentags"; - rev = "50705e8ebb7038b31314f416d1bddd9cb9154049"; - sha256 = "0vm3bp94kbc28azsmm8505hyd9v1a9isrn5dp47njmj8w17l7725"; + rev = "b77b8fabcb0b052c32fe17efcc0d44f020975244"; + sha256 = "0wiqy5m7wvrmr3d2vy5j5lz6wh3z2c2v7amy9ji7prq1gxv3n095"; }; meta.homepage = "https://github.com/ludovicchabant/vim-gutentags/"; }; vim-hardtime = buildVimPluginFrom2Nix { pname = "vim-hardtime"; - version = "2022-03-13"; + version = "2022-05-06"; src = fetchFromGitHub { owner = "takac"; repo = "vim-hardtime"; - rev = "5603072377d1f1f26a1561eda9e1884bb5f028ef"; - sha256 = "13279v9vd083xg6820gh15qxsyhbr7gjf7lzgy8w52xya852xsks"; + rev = "91177392e9372a1cf09a4b9b79532d2490bd405f"; + sha256 = "1f8vvm37yk125c0h28jbry9hshd3amrbfxcrg7j9qj9kdkad1zjq"; }; meta.homepage = "https://github.com/takac/vim-hardtime/"; }; @@ -9069,12 +9069,12 @@ final: prev: vim-highlightedyank = buildVimPluginFrom2Nix { pname = "vim-highlightedyank"; - version = "2022-01-25"; + version = "2022-05-12"; src = fetchFromGitHub { owner = "machakann"; repo = "vim-highlightedyank"; - rev = "ff16bf3bac23fb4e17c976f4e1ff7941cd686c8d"; - sha256 = "0slnykqkbqnncz0vjwhf9p9x8wi5p8xfv485wbip1njd6vqhd965"; + rev = "f9db473137ca96c6a989ec3e2b7edf8a3189c448"; + sha256 = "0lj2w9nzqrmw33gcf8k1hf50mpwymhdyyv09mp9phanywg06l1ay"; }; meta.homepage = "https://github.com/machakann/vim-highlightedyank/"; }; @@ -9380,6 +9380,18 @@ final: prev: meta.homepage = "https://github.com/google/vim-jsonnet/"; }; + vim-jsonpath = buildVimPluginFrom2Nix { + pname = "vim-jsonpath"; + version = "2020-06-16"; + src = fetchFromGitHub { + owner = "mogelbrod"; + repo = "vim-jsonpath"; + rev = "af9c07b87765fc5aee176a894bc91fb04a5e3c47"; + sha256 = "0l59c6xl4rly7xbfgsqam1rwcyvqhr7lzi3g2jpwirarm823rla9"; + }; + meta.homepage = "https://github.com/mogelbrod/vim-jsonpath/"; + }; + vim-jsx-pretty = buildVimPluginFrom2Nix { pname = "vim-jsx-pretty"; version = "2021-01-12"; @@ -9538,12 +9550,12 @@ final: prev: vim-localvimrc = buildVimPluginFrom2Nix { pname = "vim-localvimrc"; - version = "2022-04-06"; + version = "2022-05-11"; src = fetchFromGitHub { owner = "embear"; repo = "vim-localvimrc"; - rev = "b0a81e42e6036f716bd9e6b025978dfb7dacaa53"; - sha256 = "1327i1pamz3bwhj1zyr2bjn142bhp45y1xlv8gs7dm7zyixfksd3"; + rev = "244a92ceae63b8c23a74022eaf205b431745fcb6"; + sha256 = "1y56xh4k7zqagsnw86lkm747l1x4i5l95r0jks4j35d1fcmpq81i"; }; meta.homepage = "https://github.com/embear/vim-localvimrc/"; }; @@ -9658,24 +9670,24 @@ final: prev: vim-markdown = buildVimPluginFrom2Nix { pname = "vim-markdown"; - version = "2022-04-26"; + version = "2022-05-07"; src = fetchFromGitHub { owner = "preservim"; repo = "vim-markdown"; - rev = "9068655bb74bb615b3876b4d4d6a1d1141e212f3"; - sha256 = "0s4ph2c8a1ha0cd95b2lf2i5irf4bwx34929i2c5p3ihk2701fsf"; + rev = "3a9643961233c2812816078af8bd1eaabc530dce"; + sha256 = "1yw8d1c5mjkjs93nby9xfx4jwxnb8zq36p1p7ciq808xzks42994"; }; meta.homepage = "https://github.com/preservim/vim-markdown/"; }; vim-markdown-composer = buildVimPluginFrom2Nix { pname = "vim-markdown-composer"; - version = "2022-01-04"; + version = "2022-05-04"; src = fetchFromGitHub { owner = "euclio"; repo = "vim-markdown-composer"; - rev = "010ae3667fb0cb4c63c99439d1a8f81ebdcc849e"; - sha256 = "1hz0xjq0srv3llb4i6n2sw0pi2s0k3qcwyk6az5icrvkfhbnc0kf"; + rev = "5b79f425ebd28216d9aa472be3ba07cda41d9b24"; + sha256 = "0i4m2x2cw604aczp1ijnrv0wvh1b9bxg9zh0zmf8kk7b00zc1k5c"; fetchSubmodules = true; }; meta.homepage = "https://github.com/euclio/vim-markdown-composer/"; @@ -9695,12 +9707,12 @@ final: prev: vim-matchup = buildVimPluginFrom2Nix { pname = "vim-matchup"; - version = "2022-04-20"; + version = "2022-05-06"; src = fetchFromGitHub { owner = "andymass"; repo = "vim-matchup"; - rev = "1cb069f2a526682b3ce69610cf7c05511295ad37"; - sha256 = "09xwkzipsqiyglmyxkz0n6jycwp918mfxazqycy54zwng1c207q1"; + rev = "485e71120fea7be22f0ba051a05a00675276ced0"; + sha256 = "0zzn5gspi5811w1drbk362a75q4d697l0ngxgps00bcgvj9l8r6d"; }; meta.homepage = "https://github.com/andymass/vim-matchup/"; }; @@ -10247,12 +10259,12 @@ final: prev: vim-plug = buildVimPluginFrom2Nix { pname = "vim-plug"; - version = "2022-04-21"; + version = "2022-05-03"; src = fetchFromGitHub { owner = "junegunn"; repo = "vim-plug"; - rev = "be55ec46b5ab031805487a9c3e895db57f53010b"; - sha256 = "03flkm75xp7g4kzwdmvz2dc2r1aqbkyknxbclvp38xk3qwwd5kvh"; + rev = "8fdabfba0b5a1b0616977a32d9e04b4b98a6016a"; + sha256 = "046j2cq4s14ys7n5b1lil5sgdis66mydd8bpsidcyq004k3zy2lc"; }; meta.homepage = "https://github.com/junegunn/vim-plug/"; }; @@ -10343,12 +10355,12 @@ final: prev: vim-projectionist = buildVimPluginFrom2Nix { pname = "vim-projectionist"; - version = "2022-04-27"; + version = "2022-05-06"; src = fetchFromGitHub { owner = "tpope"; repo = "vim-projectionist"; - rev = "df1e28dba36e69288173fdcdce122d98538ae782"; - sha256 = "1xqf3vrw5vy2pg87b840i87pxvi252rlw4q6fyldlzffxygk6zhq"; + rev = "d4aee3035699b82b3789cee0e88dad0e38c423ab"; + sha256 = "0gmpqp9wplq8pqrqfpardrj7g5mr16w4q9485wzy9nk86nsqavj9"; }; meta.homepage = "https://github.com/tpope/vim-projectionist/"; }; @@ -10463,12 +10475,12 @@ final: prev: vim-quickrun = buildVimPluginFrom2Nix { pname = "vim-quickrun"; - version = "2022-04-16"; + version = "2022-05-08"; src = fetchFromGitHub { owner = "thinca"; repo = "vim-quickrun"; - rev = "53917966d392d5517d38e63b2520bd2641763778"; - sha256 = "03cswzwfpjf0v3nnjr0141p03fswsv13kphhac4i3ajal30nh80h"; + rev = "276f39ab6507659ea8664c51b616a89ca9445875"; + sha256 = "1gxp1rqc0vxlpmqqwxbdz0mh2pkh3hdcvsxrh1f73ya3vzlgyqfy"; }; meta.homepage = "https://github.com/thinca/vim-quickrun/"; }; @@ -10511,12 +10523,12 @@ final: prev: vim-rails = buildVimPluginFrom2Nix { pname = "vim-rails"; - version = "2022-04-27"; + version = "2022-05-06"; src = fetchFromGitHub { owner = "tpope"; repo = "vim-rails"; - rev = "2f8adae670e3fe262b793885ae5d808d40c6f2ed"; - sha256 = "1mjjhnrpdcz85r1l3jriqa55ffdkr35c0vf85g3kzg9kqf8g9y0l"; + rev = "9c92dafe6894aed3fa81df7ac52cdd8e7a8ea9a6"; + sha256 = "050vkbj1y80f1kcmb0hfd2mha1bb4v3f2bvnazcymxn08z8frww7"; }; meta.homepage = "https://github.com/tpope/vim-rails/"; }; @@ -10547,12 +10559,12 @@ final: prev: vim-rhubarb = buildVimPluginFrom2Nix { pname = "vim-rhubarb"; - version = "2021-09-13"; + version = "2022-05-11"; src = fetchFromGitHub { owner = "tpope"; repo = "vim-rhubarb"; - rev = "977b3ccbad1f7e5370354ae409fb2ea4a7ce2058"; - sha256 = "1vvjj3ql2dm3dniscxjmr5h9kfx005bgdxc1ppz6yi2q9spmchqg"; + rev = "ab0d42bb31b3317aa66dd1c0b506837cc6ca2835"; + sha256 = "0qv2ppmxpy72gb8ivz5cx19b4y8si4v428d9mmlx9q7mv9q4wmhq"; }; meta.homepage = "https://github.com/tpope/vim-rhubarb/"; }; @@ -10787,12 +10799,12 @@ final: prev: vim-slime = buildVimPluginFrom2Nix { pname = "vim-slime"; - version = "2022-01-13"; + version = "2022-05-11"; src = fetchFromGitHub { owner = "jpalardy"; repo = "vim-slime"; - rev = "0ea9b35882155996171fd15a5227e673ce2d2c60"; - sha256 = "1palz3375v400fjlxwpc4drm36rnffz86mdkyqdqssvm41fv0wkx"; + rev = "6e4b81303968f37346925d6907b96ef07788cc82"; + sha256 = "1z0nmfmn7ijj3hih4dbi1iq3dc6gpprck3fmidhmkv6vms041nx4"; }; meta.homepage = "https://github.com/jpalardy/vim-slime/"; }; @@ -10823,12 +10835,12 @@ final: prev: vim-smoothie = buildVimPluginFrom2Nix { pname = "vim-smoothie"; - version = "2021-02-07"; + version = "2022-05-04"; src = fetchFromGitHub { owner = "psliwka"; repo = "vim-smoothie"; - rev = "10fd0aa57d176718bc2c570f121ab523c4429a25"; - sha256 = "18zn29mkgdiddn3il393xzg7hpa0x25yvais1l29jq2711sg4rdc"; + rev = "b440f139a55cb5161cde3478729f6603d9d20d81"; + sha256 = "1hvv440zb3bwx1v8nyy3bk9vnhlbjy2a1hdfcmc37rghbni1kp0k"; }; meta.homepage = "https://github.com/psliwka/vim-smoothie/"; }; @@ -10871,12 +10883,12 @@ final: prev: vim-snippets = buildVimPluginFrom2Nix { pname = "vim-snippets"; - version = "2022-04-30"; + version = "2022-05-12"; src = fetchFromGitHub { owner = "honza"; repo = "vim-snippets"; - rev = "45c8e00d0bae9056713097ea655d76d463b66f10"; - sha256 = "0zng2k82kwm0av1dyar6y44cq79v5khy07swwp6kmkz5vjj9y4dd"; + rev = "6f270bb2d26c38765ff2243e9337c65f8a96a28b"; + sha256 = "0jzafsk1ri2jfn26k962x2g6ygqrkrf3kwvd1ikx0hql0nhcvrrq"; }; meta.homepage = "https://github.com/honza/vim-snippets/"; }; @@ -11292,12 +11304,12 @@ final: prev: vim-tpipeline = buildVimPluginFrom2Nix { pname = "vim-tpipeline"; - version = "2022-04-19"; + version = "2022-05-11"; src = fetchFromGitHub { owner = "vimpostor"; repo = "vim-tpipeline"; - rev = "7a5d832ca3086aeddc607304a2dde481b66f1719"; - sha256 = "0dnlq3iv7dq798m1llpn72b4kwvxrw7q7bgkswhaqhgcsb1xjxwz"; + rev = "2c4417db1d549f96a6a944bf4d85d8c797ab4a31"; + sha256 = "1rzhzl4w9k11maa1iy0a8sss3319jvp1viqqh0l7kgg13595acnk"; }; meta.homepage = "https://github.com/vimpostor/vim-tpipeline/"; }; @@ -11352,12 +11364,12 @@ final: prev: vim-ultest = buildVimPluginFrom2Nix { pname = "vim-ultest"; - version = "2022-04-09"; + version = "2022-05-05"; src = fetchFromGitHub { owner = "rcarriga"; repo = "vim-ultest"; - rev = "a99eb0bdf7d901d538b5dd724e2ab3a958c1799c"; - sha256 = "0mlb2qvxw7ds0b6jrxw5224mz1bzlzb4vly2wnygzrl6mhsk2xyw"; + rev = "6978fd32e3ca2c1c5591884eea0d57a7ee43d212"; + sha256 = "19dphm7xgfc0xvxrlys21zkp7ixbx62p11x6ms6xmwm8cjjh64pc"; }; meta.homepage = "https://github.com/rcarriga/vim-ultest/"; }; @@ -11424,12 +11436,12 @@ final: prev: vim-visual-multi = buildVimPluginFrom2Nix { pname = "vim-visual-multi"; - version = "2022-04-08"; + version = "2022-05-06"; src = fetchFromGitHub { owner = "mg979"; repo = "vim-visual-multi"; - rev = "d5b820655e17c6ccd363885e5614652e4cffae95"; - sha256 = "0mp8g825l0zcj0gh3v5wa29dq5hhx0f96ijsd5bxhh694vppx8q5"; + rev = "046d0d5ac5fb2888447d1dd8b7e52fd0314f9766"; + sha256 = "17masfjxrhjcfqmlgf1jpmmz18j8vb4n88dl34rry6c3abiraprj"; }; meta.homepage = "https://github.com/mg979/vim-visual-multi/"; }; @@ -11797,12 +11809,12 @@ final: prev: vimtex = buildVimPluginFrom2Nix { pname = "vimtex"; - version = "2022-05-02"; + version = "2022-05-12"; src = fetchFromGitHub { owner = "lervag"; repo = "vimtex"; - rev = "9ffbe63a2055b59b09b18b1cd682e0b2703cc898"; - sha256 = "151ilpd7360rhpi3nyi5dfky814zx9zc4fa82wj6bnkcwy1b4k0c"; + rev = "dfaca59bbbf0079ab1b4f159337ae7f17d1b5289"; + sha256 = "1sbsirrl822dp9z1vynkhzbd2yhid9vcr9yzp540qrp6flcvf10q"; }; meta.homepage = "https://github.com/lervag/vimtex/"; }; @@ -11893,12 +11905,12 @@ final: prev: which-key-nvim = buildVimPluginFrom2Nix { pname = "which-key.nvim"; - version = "2022-03-18"; + version = "2022-05-04"; src = fetchFromGitHub { owner = "folke"; repo = "which-key.nvim"; - rev = "a3c19ec5754debb7bf38a8404e36a9287b282430"; - sha256 = "00kkl785ifx5sg49q65d4yzdgf08gyriqrils5n4zhz4pksd5z1a"; + rev = "bd4411a2ed4dd8bb69c125e339d837028a6eea71"; + sha256 = "0vf685xgdb967wmvffk1pfrvbhg1jkvzp1kb7r0vs90mg8gpv1aj"; }; meta.homepage = "https://github.com/folke/which-key.nvim/"; }; @@ -11917,12 +11929,12 @@ final: prev: wildfire-vim = buildVimPluginFrom2Nix { pname = "wildfire.vim"; - version = "2021-05-10"; + version = "2022-05-05"; src = fetchFromGitHub { owner = "gcmt"; repo = "wildfire.vim"; - rev = "fa91b732fd1c5acd23b7b32d5fbbc884eedafc8d"; - sha256 = "15gikqmpaf5c6687kgc5ib57pw7gyvxaihdv5549s7p2xkkbcl24"; + rev = "b371e2b1d938ae0e164146136051de164ecb9aa5"; + sha256 = "0lpv10330818aza0fv8adzswnq8jq47z043p6gqfn7b7h2visy5p"; }; meta.homepage = "https://github.com/gcmt/wildfire.vim/"; }; @@ -12098,12 +12110,12 @@ final: prev: zoxide-vim = buildVimPluginFrom2Nix { pname = "zoxide.vim"; - version = "2021-12-10"; + version = "2022-05-07"; src = fetchFromGitHub { owner = "nanotee"; repo = "zoxide.vim"; - rev = "c4e96f34b1b3160d6b6a6519588024412df27cd7"; - sha256 = "0zisr1r1z9ys0jkab1lvwy4klwkay07p0095f03r9qydnig8jgsm"; + rev = "5062d4c17ff873eeed88cabe317d7ee1a43c5731"; + sha256 = "1chq7fnygvb1wm7v0rg8cf0czn1q1i59kggg0jdvrnwf0f6m7nb4"; }; meta.homepage = "https://github.com/nanotee/zoxide.vim/"; }; @@ -12122,12 +12134,12 @@ final: prev: chad = buildVimPluginFrom2Nix { pname = "chad"; - version = "2022-05-02"; + version = "2022-05-13"; src = fetchFromGitHub { owner = "ms-jpq"; repo = "chadtree"; - rev = "820c1913a77a12d080e3436e60a491327664589b"; - sha256 = "0lc5ldg65h4jqb6qkz22avzv4x2jmciabcsy47a9wkzy2l9hlvza"; + rev = "b6ac01c187359e305a2df8caea540f4527b91ab2"; + sha256 = "14rp8h59bnwpi86nnkmhxsgyszhhd26fzra7wjni2agdhf2410zp"; }; meta.homepage = "https://github.com/ms-jpq/chadtree/"; }; @@ -12194,12 +12206,12 @@ final: prev: rose-pine = buildVimPluginFrom2Nix { pname = "rose-pine"; - version = "2022-04-25"; + version = "2022-05-06"; src = fetchFromGitHub { owner = "rose-pine"; repo = "neovim"; - rev = "da67a549cf5d67e15618cc3001f1e07724a1597f"; - sha256 = "1dfccfjy67b7269zypkdi7x6fcsdgw2qmd44kyk66qr6f9q4yng2"; + rev = "aa69b6a3d77068542c613d96419c3241a9fcbf46"; + sha256 = "0x9pn109my5rw627qmf5xawy3n40l9n3l6hp6np77y2rqlpn8m3y"; }; meta.homepage = "https://github.com/rose-pine/neovim/"; }; diff --git a/pkgs/applications/editors/vim/plugins/neovim-require-check-hook.sh b/pkgs/applications/editors/vim/plugins/neovim-require-check-hook.sh new file mode 100644 index 00000000000..5b454e0ff01 --- /dev/null +++ b/pkgs/applications/editors/vim/plugins/neovim-require-check-hook.sh @@ -0,0 +1,21 @@ +# Setup hook for checking whether Python imports succeed +echo "Sourcing neovim-require-check-hook.sh" + +neovimRequireCheckHook () { + echo "Executing neovimRequireCheckHook" + + if [ -n "$nvimRequireCheck" ]; then + echo "Check whether the following module can be imported: $nvimRequireCheck" + + # editorconfig-checker-disable + export HOME="$TMPDIR" + @nvimBinary@ -es --headless -n -u NONE -i NONE --clean -V1 \ + --cmd "set rtp+=$out" \ + --cmd "lua require('$nvimRequireCheck')" + fi +} + +echo "Using neovimRequireCheckHook" +preDistPhases+=" neovimRequireCheckHook" + + diff --git a/pkgs/applications/editors/vim/plugins/overrides.nix b/pkgs/applications/editors/vim/plugins/overrides.nix index 3273d841c65..494d42a4c46 100644 --- a/pkgs/applications/editors/vim/plugins/overrides.nix +++ b/pkgs/applications/editors/vim/plugins/overrides.nix @@ -327,6 +327,9 @@ self: super: { sed -Ei lua/plenary/curl.lua \ -e 's@(command\s*=\s*")curl(")@\1${curl}/bin/curl\2@' ''; + + doInstallCheck = true; + nvimRequireCheck = "plenary"; }); gruvbox-nvim = super.gruvbox-nvim.overrideAttrs (old: { @@ -842,7 +845,7 @@ self: super: { libiconv ]; - cargoSha256 = "035v8mm8v7aj8qwhvxsp6k0afn05gi2xb1achzsvm0m4a8a9xs65"; + cargoSha256 = "0l1x7kprnxa95pbf8ml9ixmj0cmbnnv6nd0v6qry8j67rx8plpmp"; }; in '' @@ -971,7 +974,7 @@ self: super: { vim-markdown-composer-bin = rustPlatform.buildRustPackage rec { pname = "vim-markdown-composer-bin"; inherit (super.vim-markdown-composer) src version; - cargoSha256 = "03d7kap6vha1jmyfrjqaja5439x6mhnvjjbz3rmxb3x4dpppbpj1"; + cargoSha256 = "0q0i6kyihswrjrfdj4p3z54b779sdg2wz38z943ypj6dqphhcklx"; }; in super.vim-markdown-composer.overrideAttrs (oldAttrs: rec { diff --git a/pkgs/applications/editors/vim/plugins/vim-plugin-names b/pkgs/applications/editors/vim/plugins/vim-plugin-names index 6369d0ca7c4..e3806c71a2f 100644 --- a/pkgs/applications/editors/vim/plugins/vim-plugin-names +++ b/pkgs/applications/editors/vim/plugins/vim-plugin-names @@ -533,6 +533,7 @@ https://github.com/chr4/sslsecure.vim/,, https://github.com/luukvbaal/stabilize.nvim/,, https://github.com/eigenfoo/stan-vim/,, https://github.com/darfink/starsearch.vim/,, +https://github.com/teto/stylish.nvim/,HEAD, https://github.com/lambdalisue/suda.vim/,, https://github.com/ervandew/supertab/,, https://github.com/ur4ltz/surround.nvim/,, @@ -786,6 +787,7 @@ https://github.com/maksimr/vim-jsbeautify/,, https://github.com/heavenshell/vim-jsdoc/,, https://github.com/elzr/vim-json/,, https://github.com/google/vim-jsonnet/,, +https://github.com/mogelbrod/vim-jsonpath/,HEAD, https://github.com/MaxMEllon/vim-jsx-pretty/,, https://github.com/peitalin/vim-jsx-typescript/,, https://github.com/knubie/vim-kitty-navigator/,, diff --git a/pkgs/applications/editors/vim/plugins/vim-utils.nix b/pkgs/applications/editors/vim/plugins/vim-utils.nix index e685e398fc2..9511e4da195 100644 --- a/pkgs/applications/editors/vim/plugins/vim-utils.nix +++ b/pkgs/applications/editors/vim/plugins/vim-utils.nix @@ -531,14 +531,26 @@ rec { }; } ./vim-command-check-hook.sh) {}; + neovimRequireCheckHook = callPackage ({ neovim-unwrapped }: + makeSetupHook { + name = "neovim-require-check-hook"; + deps = [ neovim-unwrapped ]; + substitutions = { + nvimBinary = "${neovim-unwrapped}/bin/nvim"; + inherit rtpPath; + }; + } ./neovim-require-check-hook.sh) {}; + inherit (import ./build-vim-plugin.nix { - inherit lib stdenv rtpPath vim vimGenDocHook vimCommandCheckHook; + inherit lib stdenv rtpPath vim vimGenDocHook vimCommandCheckHook neovimRequireCheckHook; }) buildVimPlugin buildVimPluginFrom2Nix; # TODO placeholder to ease working on automatic plugin detection # this should be a luarocks "flat" install with appropriate vim hooks - buildNeovimPluginFrom2Nix = buildVimPluginFrom2Nix; + buildNeovimPluginFrom2Nix = attrs: let drv = (buildVimPluginFrom2Nix attrs); in drv.overrideAttrs(oa: { + nativeBuildInputs = oa.nativeBuildInputs ++ [ neovimRequireCheckHook ]; + }); # used to figure out which python dependencies etc. neovim needs requiredPlugins = { diff --git a/pkgs/applications/editors/vscode/extensions/rust-analyzer/build-deps/package.json b/pkgs/applications/editors/vscode/extensions/rust-analyzer/build-deps/package.json index 5ccc6f2fa41..48592e9e6dd 100644 --- a/pkgs/applications/editors/vscode/extensions/rust-analyzer/build-deps/package.json +++ b/pkgs/applications/editors/vscode/extensions/rust-analyzer/build-deps/package.json @@ -1,15 +1,16 @@ { "name": "rust-analyzer", - "version": "0.2.1048", + "version": "0.3.1059", "dependencies": { - "vscode-languageclient": "8.0.0-next.14", "d3": "^7.3.0", "d3-graphviz": "^4.1.0", + "vscode-languageclient": "8.0.0-next.14", "@types/node": "~14.17.5", "@types/vscode": "~1.66.0", "@typescript-eslint/eslint-plugin": "^5.16.0", "@typescript-eslint/parser": "^5.16.0", "@vscode/test-electron": "^2.1.3", + "cross-env": "^7.0.3", "eslint": "^8.11.0", "tslib": "^2.3.0", "typescript": "^4.6.3", diff --git a/pkgs/applications/editors/vscode/extensions/rust-analyzer/default.nix b/pkgs/applications/editors/vscode/extensions/rust-analyzer/default.nix index c11add5021c..7e9dca1ffa0 100644 --- a/pkgs/applications/editors/vscode/extensions/rust-analyzer/default.nix +++ b/pkgs/applications/editors/vscode/extensions/rust-analyzer/default.nix @@ -15,18 +15,18 @@ let pname = "rust-analyzer"; - publisher = "matklad"; + publisher = "rust-lang"; # Use the plugin version as in vscode marketplace, updated by update script. inherit (vsix) version; - releaseTag = "2022-03-07"; + releaseTag = "2022-05-17"; src = fetchFromGitHub { - owner = "rust-analyzer"; + owner = "rust-lang"; repo = "rust-analyzer"; rev = releaseTag; - sha256 = "sha256-/qKh4utesAjlyG8A3hEmSx+HBgh48Uje6ZRtUGz5f0g="; + sha256 = "sha256-vrVpgQYUuJPgK1NMb1nxlCdxjoYo40YkUbZpH2Z2mwM="; }; build-deps = nodePackages."rust-analyzer-build-deps-../../applications/editors/vscode/extensions/rust-analyzer/build-deps"; @@ -47,7 +47,7 @@ let darwin.apple_sdk.frameworks.Security ]; - # Follows https://github.com/rust-analyzer/rust-analyzer/blob/41949748a6123fd6061eb984a47f4fe780525e63/xtask/src/dist.rs#L39-L65 + # Follows https://github.com/rust-lang/rust-analyzer/blob/41949748a6123fd6061eb984a47f4fe780525e63/xtask/src/dist.rs#L39-L65 postInstall = '' jq ' .version = $ENV.version | @@ -58,7 +58,7 @@ let mkdir -p $vsix # vsce ask for continue due to missing LICENSE.md - # Should be removed after https://github.com/rust-analyzer/rust-analyzer/commit/acd5c1f19bf7246107aaae7b6fe3f676a516c6d2 + # Should be removed after https://github.com/rust-lang/rust-analyzer/commit/acd5c1f19bf7246107aaae7b6fe3f676a516c6d2 echo y | npx vsce package -o $vsix/${pname}.zip ''; }; @@ -80,7 +80,7 @@ vscode-utils.buildVscodeExtension { meta = with lib; { description = "An alternative rust language server to the RLS"; - homepage = "https://github.com/rust-analyzer/rust-analyzer"; + homepage = "https://github.com/rust-lang/rust-analyzer"; license = with licenses; [ mit asl20 ]; maintainers = with maintainers; [ ]; platforms = platforms.all; diff --git a/pkgs/applications/editors/vscode/extensions/rust-analyzer/update.sh b/pkgs/applications/editors/vscode/extensions/rust-analyzer/update.sh index 69e6e5cd0f8..3fa4e6f4c11 100755 --- a/pkgs/applications/editors/vscode/extensions/rust-analyzer/update.sh +++ b/pkgs/applications/editors/vscode/extensions/rust-analyzer/update.sh @@ -47,3 +47,5 @@ else ./"$node_packages"/generate.sh fi + +echo "Remember to also update the revisionTag and hash in default.nix!" diff --git a/pkgs/applications/editors/vscode/vscodium.nix b/pkgs/applications/editors/vscode/vscodium.nix index 633688567ae..9fde99f3f58 100644 --- a/pkgs/applications/editors/vscode/vscodium.nix +++ b/pkgs/applications/editors/vscode/vscodium.nix @@ -14,11 +14,11 @@ let archive_fmt = if stdenv.isDarwin then "zip" else "tar.gz"; sha256 = { - x86_64-linux = "1i76ix318y6b2dcfnisg13bp5d7nzvcx7zcpl94mkrn974db30pn"; - x86_64-darwin = "1qk1vykl838vwsffyjpazx7x9ajwxczpgz5vhch16iikfz2vh1vk"; - aarch64-linux = "13jifiqn2v17d6vwacq6aib1lzyp2021kjdswkp7wpx6ck5lkm21"; - aarch64-darwin = "1jgmvw52hp2zfvk6z51yni4vn7wfq63gsih42mzadg5a1b2fr9rx"; - armv7l-linux = "1zhriscsmfcsagsp2ds0fn316fybs5f2f2r3w5q29jwczgcnlam4"; + x86_64-linux = "0hsq3b8j58xjl8pkrd5x3qh0lsl9gwbd9wgvhzlnx2h94iasr1v5"; + x86_64-darwin = "04fbl8kp3af7xcicx17ay2piwy4y3yiyn9723hlmmf7s359rr1wn"; + aarch64-linux = "0jljsa61zr3symfdsjx9jj4s3y1kqslxh8gc1gqx45zlm5rzr7k8"; + aarch64-darwin = "1swkc0qb1xif8hj6cjp3jq1iqdfqsa681hhp7mxvrpqg0i2zppk3"; + armv7l-linux = "1ssbdc4b11xmd45m7bzhdh6szx331pzah2mjpqjg7cz3ray3xvwy"; }.${system}; sourceRoot = if stdenv.isDarwin then "" else "."; @@ -28,7 +28,7 @@ in # Please backport all compatible updates to the stable release. # This is important for the extension ecosystem. - version = "1.66.2"; + version = "1.67.1"; pname = "vscodium"; executableName = "codium"; diff --git a/pkgs/applications/editors/xxe-pe/default.nix b/pkgs/applications/editors/xxe-pe/default.nix index 8734f4d31c8..191ed6d2d42 100644 --- a/pkgs/applications/editors/xxe-pe/default.nix +++ b/pkgs/applications/editors/xxe-pe/default.nix @@ -24,7 +24,7 @@ let in stdenv.mkDerivation rec { pname = "xxe-pe"; - version = "9.4.0"; + version = "10.1.0"; src = assert !acceptLicense -> throw '' @@ -35,7 +35,7 @@ stdenv.mkDerivation rec { ''; fetchurl { url = "https://www.xmlmind.com/xmleditor/_download/xxe-perso-${builtins.replaceStrings [ "." ] [ "_" ] version}.zip"; - sha256 = "FKPdf9cOpgm/WG2i8bFnR6MmEifpiq5ykw2zHA8HnT8="; + sha256 = "sha256-AeyaJSEJQQJ/XxvaIky4fnEr+7fVAEqhSxtYhN8L2JA="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/emulators/bsnes/ares/default.nix b/pkgs/applications/emulators/bsnes/ares/default.nix index c1597fe2c6e..4cc449ee49f 100644 --- a/pkgs/applications/emulators/bsnes/ares/default.nix +++ b/pkgs/applications/emulators/bsnes/ares/default.nix @@ -2,6 +2,7 @@ , stdenv , fetchFromGitHub , pkg-config +, wrapGAppsHook , SDL2 , alsa-lib , gtk3 @@ -18,13 +19,13 @@ stdenv.mkDerivation rec { pname = "ares"; - version = "127"; + version = "128"; src = fetchFromGitHub { owner = "ares-emulator"; repo = "ares"; rev = "v${version}"; - sha256 = "0rhq39w41j9yr1fkyfmf4n6fjxnq1cglj98rp4wys12kwqv7smvx"; + sha256 = "sha256-Ojf1kyColBK0S3DwXjGaAZSl0ljhgiXkfKC11BL2fEc="; }; patches = [ @@ -34,6 +35,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ pkg-config + wrapGAppsHook ]; buildInputs = [ diff --git a/pkgs/applications/emulators/bsnes/bsnes-hd/default.nix b/pkgs/applications/emulators/bsnes/bsnes-hd/default.nix index 6494185958c..edb397a49d3 100644 --- a/pkgs/applications/emulators/bsnes/bsnes-hd/default.nix +++ b/pkgs/applications/emulators/bsnes/bsnes-hd/default.nix @@ -1,9 +1,10 @@ { lib, stdenv, fetchFromGitHub , pkg-config +, wrapGAppsHook , libX11, libXv , udev , SDL2 -, gtk2, gtksourceview +, gtk3, gtksourceview3 , alsa-lib, libao, openal, libpulseaudio , libicns, Cocoa, OpenAL }: @@ -34,16 +35,23 @@ stdenv.mkDerivation { ./macos-copy-app-to-prefix.patch ]; - nativeBuildInputs = [ pkg-config ] + nativeBuildInputs = [ pkg-config wrapGAppsHook ] ++ lib.optionals stdenv.isDarwin [ libicns ]; buildInputs = [ SDL2 libao ] - ++ lib.optionals stdenv.isLinux [ libX11 libXv udev gtk2 gtksourceview alsa-lib openal libpulseaudio ] + ++ lib.optionals stdenv.isLinux [ libX11 libXv udev gtk3 gtksourceview3 alsa-lib openal libpulseaudio ] ++ lib.optionals stdenv.isDarwin [ Cocoa OpenAL ]; enableParallelBuilding = true; - makeFlags = [ "-C" "bsnes" "prefix=$(out)" ]; + makeFlags = [ "-C" "bsnes" "hiro=gtk3" "prefix=$(out)" ]; + + # https://github.com/bsnes-emu/bsnes/issues/107 + preFixup = '' + gappsWrapperArgs+=( + --prefix GDK_BACKEND : x11 + ) + ''; meta = with lib; { description = "A fork of bsnes that adds HD video features"; @@ -51,5 +59,6 @@ stdenv.mkDerivation { license = licenses.gpl3Only; maintainers = with maintainers; [ stevebob ]; platforms = platforms.unix; + mainProgram = "bsnes"; }; } diff --git a/pkgs/applications/emulators/np2kai/default.nix b/pkgs/applications/emulators/np2kai/default.nix index 0ed47af8f5b..dd5e53967c0 100644 --- a/pkgs/applications/emulators/np2kai/default.nix +++ b/pkgs/applications/emulators/np2kai/default.nix @@ -156,6 +156,9 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; + # TODO Remove when bumping past rev22 + NIX_CFLAGS_COMPILE = lib.optionalString stdenv.hostPlatform.isDarwin "-D_DARWIN_C_SOURCE"; + buildPhase = optionalString enableSDL '' cd sdl2 for mkfile in ${sdlMakefiles}; do diff --git a/pkgs/applications/emulators/retrofe/default.nix b/pkgs/applications/emulators/retrofe/default.nix index dc1a23f33b3..2a0b41ba2b6 100644 --- a/pkgs/applications/emulators/retrofe/default.nix +++ b/pkgs/applications/emulators/retrofe/default.nix @@ -1,15 +1,16 @@ -{ lib, stdenv, fetchhg, cmake, glib, gst_all_1, makeWrapper, pkg-config +{ lib, stdenv, fetchFromGitHub, cmake, glib, gst_all_1, makeWrapper, pkg-config , python2, SDL2, SDL2_image, SDL2_mixer, SDL2_ttf, sqlite, zlib, runtimeShell }: stdenv.mkDerivation { pname = "retrofe"; - version = "0.6.169"; + version = "0.10.31"; - src = fetchhg { - url = "https://bitbucket.org/teamretro/retrofe"; - rev = "8793e03"; - sha256 = "0cvsg07ff0fdqh5zgiv2fs7s6c98hn150kpxmpw5fn6jilaszwkm"; + src = fetchFromGitHub { + owner = "phulshof"; + repo = "RetroFE"; + rev = "2ddd65a76210d241031c4ac9268255f311df25d1"; + sha256 = "sha256-uBfECbU2Df/pPpEXXq62S7Ec0YU4lPIsZ8k5UmKD7xQ="; }; nativeBuildInputs = [ cmake makeWrapper pkg-config python2 ]; @@ -18,12 +19,9 @@ stdenv.mkDerivation { glib gst_all_1.gstreamer SDL2 SDL2_image SDL2_mixer SDL2_ttf sqlite zlib ] ++ (with gst_all_1; [ gst-libav gst-plugins-base gst-plugins-good ]); - patches = [ ./include-paths.patch ]; - configurePhase = '' cmake RetroFE/Source -BRetroFE/Build -DCMAKE_BUILD_TYPE=Release \ -DVERSION_MAJOR=0 -DVERSION_MINOR=0 -DVERSION_BUILD=0 \ - -DGSTREAMER_BASE_INCLUDE_DIRS='${gst_all_1.gst-plugins-base.dev}/include/gstreamer-1.0' ''; buildPhase = '' @@ -70,7 +68,7 @@ stdenv.mkDerivation { meta = with lib; { description = "A frontend for arcade cabinets and media PCs"; - homepage = "http://retrofe.com"; + homepage = "http://retrofe.nl/"; license = licenses.gpl3Plus; maintainers = with maintainers; [ hrdinka ]; platforms = with platforms; linux; diff --git a/pkgs/applications/emulators/retrofe/include-paths.patch b/pkgs/applications/emulators/retrofe/include-paths.patch deleted file mode 100644 index 02eef2594ea..00000000000 --- a/pkgs/applications/emulators/retrofe/include-paths.patch +++ /dev/null @@ -1,11 +0,0 @@ -diff -ur RetroFE.1/RetroFE/Source/CMakeLists.txt RetroFE.2/RetroFE/Source/CMakeLists.txt ---- RetroFE.1/RetroFE/Source/CMakeLists.txt 2016-02-21 14:52:36.726070602 +0100 -+++ RetroFE.2/RetroFE/Source/CMakeLists.txt 2016-02-21 14:38:43.036249029 +0100 -@@ -59,6 +59,7 @@ - set(RETROFE_INCLUDE_DIRS - "${GLIB2_INCLUDE_DIRS}" - "${GSTREAMER_INCLUDE_DIRS}" -+ "${GSTREAMER_BASE_INCLUDE_DIRS}" - "${SDL2_INCLUDE_DIRS}" - "${SDL2_IMAGE_INCLUDE_DIRS}" - "${SDL2_MIXER_INCLUDE_DIRS}" diff --git a/pkgs/applications/emulators/ryujinx/default.nix b/pkgs/applications/emulators/ryujinx/default.nix index e235b2c80fb..60aa9debfb0 100644 --- a/pkgs/applications/emulators/ryujinx/default.nix +++ b/pkgs/applications/emulators/ryujinx/default.nix @@ -58,6 +58,10 @@ buildDotnetModule rec { pulseaudio ]; + makeWrapperArgs = [ + "--suffix PATH : ${lib.getBin ffmpeg}" + ]; + patches = [ ./appdir.patch # Ryujinx attempts to write to the nix store. This patch redirects it to "~/.config/Ryujinx" on Linux. ]; @@ -66,11 +70,6 @@ buildDotnetModule rec { # workaround for https://github.com/Ryujinx/Ryujinx/issues/2349 mkdir -p $out/lib/sndio-6 ln -s ${sndio}/lib/libsndio.so $out/lib/sndio-6/libsndio.so.6 - - # Ryujinx tries to use ffmpeg from PATH - makeWrapperArgs+=( - --suffix PATH : ${lib.makeBinPath [ ffmpeg ]} - ) ''; preFixup = '' diff --git a/pkgs/applications/emulators/wine/base.nix b/pkgs/applications/emulators/wine/base.nix index 7788b13b4ec..47852d69e3b 100644 --- a/pkgs/applications/emulators/wine/base.nix +++ b/pkgs/applications/emulators/wine/base.nix @@ -175,7 +175,9 @@ stdenv.mkDerivation ((lib.optionalAttrs (buildScript != null) { done ''; - enableParallelBuilding = true; + # Until https://github.com/NixOS/nixpkgs/pull/172617 is applied, + # parallel builds do not always work because of a bug in dlltool. + enableParallelBuilding = false; # https://bugs.winehq.org/show_bug.cgi?id=43530 # https://github.com/NixOS/nixpkgs/issues/31989 diff --git a/pkgs/applications/emulators/wine/sources.nix b/pkgs/applications/emulators/wine/sources.nix index 23538a237e4..febbece46f5 100644 --- a/pkgs/applications/emulators/wine/sources.nix +++ b/pkgs/applications/emulators/wine/sources.nix @@ -46,22 +46,22 @@ in rec { unstable = fetchurl rec { # NOTE: Don't forget to change the SHA256 for staging as well. - version = "7.4"; + version = "7.8"; url = "https://dl.winehq.org/wine/source/7.x/wine-${version}.tar.xz"; - sha256 = "sha256-co6GbW5JzpKioMUUMz6f8Ivb9shvXvTmGAFDuNK31BY="; + sha256 = "sha256-j3bpyWtQ8qyOJOXe7fo+DZWWpXBnCSJvZalMahYAGbg="; inherit (stable) gecko32 gecko64 patches; mono = fetchurl rec { - version = "7.1.1"; + version = "7.2.0"; url = "https://dl.winehq.org/wine/wine-mono/${version}/wine-mono-${version}-x86.msi"; - sha256 = "sha256-ncjlYDt7xkNU65SuTqD2ghQkdno/9E/w0Z40akkMEeo="; + sha256 = "sha256-Xwbq+646SezDHfzqd3B1vUTwzBJuT7Tijs76ButDYyM="; }; }; staging = fetchFromGitHub rec { # https://github.com/wine-staging/wine-staging/releases inherit (unstable) version; - sha256 = "0vlj3b8bnidyhlgkjrnlbah3878zjy3s557vbp16qka42zjaa51q"; + sha256 = "sha256-payP+lx/aGZErGbkpogNMgsE393e7F2VGrllDKu/Lws="; owner = "wine-staging"; repo = "wine-staging"; rev = "v${version}"; @@ -84,8 +84,8 @@ in rec { winetricks = fetchFromGitHub rec { # https://github.com/Winetricks/winetricks/releases - version = "20210825"; - sha256 = "sha256-exMhj3dS8uXCEgOaWbftaq94mBOmtZIXsXb9xNX5ha8="; + version = "20220411"; + sha256 = "sha256-FjH10nZDYbqXI6/vKpZJKfv2maXSVkahNDf5UTU3eyU="; owner = "Winetricks"; repo = "winetricks"; rev = version; diff --git a/pkgs/applications/finance/odoo/default.nix b/pkgs/applications/finance/odoo/default.nix index 66b1bb0f97f..bd8b21aa5aa 100644 --- a/pkgs/applications/finance/odoo/default.nix +++ b/pkgs/applications/finance/odoo/default.nix @@ -2,52 +2,98 @@ , lib , fetchurl , python3 -, python3Packages , nodePackages , wkhtmltopdf -, callPackage +, nixosTests }: -with python3Packages; - let - werkzeug = python3Packages.callPackage ../../../development/python-modules/werkzeug/1.nix {}; -in - -buildPythonApplication rec { + python = python3.override { + packageOverrides = self: super: { + click = super.click.overridePythonAttrs (old: rec { + version = "7.1.2"; + src = old.src.override { + inherit version; + sha256 = "d2b5255c7c6349bc1bd1e59e08cd12acbbd63ce649f2588755783aa94dfb6b1a"; + }; + }); + flask = super.flask.overridePythonAttrs (old: rec { + version = "1.1.4"; + src = old.src.override { + inherit version; + sha256 = "0fbeb6180d383a9186d0d6ed954e0042ad9f18e0e8de088b2b419d526927d196"; + }; + }); + itsdangerous = super.itsdangerous.overridePythonAttrs (old: rec { + version = "1.1.0"; + src = old.src.override { + inherit version; + sha256 = "321b033d07f2a4136d3ec762eac9f16a10ccd60f53c0c91af90217ace7ba1f19"; + }; + }); + jinja2 = super.jinja2.overridePythonAttrs (old: rec { + version = "2.11.3"; + src = old.src.override { + inherit version; + sha256 = "a6d58433de0ae800347cab1fa3043cebbabe8baa9d29e668f1c768cb87a333c6"; + }; + }); + markupsafe = super.markupsafe.overridePythonAttrs (old: rec { + version = "2.0.1"; + src = old.src.override { + inherit version; + sha256 = "594c67807fb16238b30c44bdf74f36c02cdf22d1c8cda91ef8a0ed8dabf5620a"; + }; + }); + werkzeug = super.werkzeug.overridePythonAttrs (old: rec { + version = "1.0.1"; + src = old.src.override { + inherit version; + sha256 = "6c80b1e5ad3665290ea39320b91e1be1e0d5f60652b964a3070216de83d2e47c"; + }; + checkInputs = old.checkInputs ++ (with self; [ + requests + ]); + disabledTests = old.disabledTests ++ [ + # ResourceWarning: unclosed file + "test_basic" + "test_date_to_unix" + "test_easteregg" + "test_file_rfc2231_filename_continuations" + "test_find_terminator" + "test_save_to_pathlib_dst" + ]; + disabledTestPaths = old.disabledTestPaths ++ [ + # ResourceWarning: unclosed file + "tests/test_http.py" + ]; + }); + }; + }; +in python.pkgs.buildPythonApplication rec { pname = "odoo"; - major = "15"; - minor = "0"; - patch = "20220126"; + odoo_version = "15.0"; + odoo_release = "20220506"; - version = "${major}.${minor}.${patch}"; + version = "${odoo_version}.${odoo_release}"; + + format = "setuptools"; # latest release is at https://github.com/odoo/docker/blob/master/15.0/Dockerfile src = fetchurl { - url = "https://nightly.odoo.com/${major}.${minor}/nightly/src/odoo_${version}.tar.gz"; + url = "https://nightly.odoo.com/${odoo_version}/nightly/src/odoo_${version}.tar.gz"; name = "${pname}-${version}"; - hash = "sha256-mofV0mNCdyzJecp0XegZBR/5NzHjis9kbpsUA/KJbZg="; + sha256 = "0mwlmfz5nhvg483ldrmlrjhwaf284c0c0pxf0fb0sfx2dnjjj3ib"; # odoo }; - nativeBuildInputs = [ - setuptools - wheel - mock - ]; - - buildInputs = [ - wkhtmltopdf - nodePackages.rtlcss - ]; - # needs some investigation doCheck = false; makeWrapperArgs = [ "--prefix" "PATH" ":" "${lib.makeBinPath [ wkhtmltopdf nodePackages.rtlcss ]}" ]; - propagatedBuildInputs = [ - Babel + propagatedBuildInputs = with python.pkgs; [ + babel chardet decorator docutils @@ -94,6 +140,13 @@ buildPythonApplication rec { cd odoo* ''; + passthru = { + updateScript = ./update.sh; + tests = { + inherit (nixosTests) odoo; + }; + }; + meta = with lib; { description = "Open Source ERP and CRM"; homepage = "https://www.odoo.com/"; diff --git a/pkgs/applications/finance/odoo/update.sh b/pkgs/applications/finance/odoo/update.sh new file mode 100755 index 00000000000..3b49727867c --- /dev/null +++ b/pkgs/applications/finance/odoo/update.sh @@ -0,0 +1,27 @@ +#!/usr/bin/env nix-shell +#!nix-shell -i bash -p curl gnused nix coreutils + +set -euo pipefail + +DOCKER=$(curl -s https://raw.githubusercontent.com/odoo/docker/master/15.0/Dockerfile) + +get_var() { + echo "$DOCKER" | grep -E "^[A-Z][A-Z][A-Z] ODOO_$1" | sed -r "s|^[A-Z]{3} ODOO_$1.||g" +} + +VERSION=$(get_var VERSION) +RELEASE=$(get_var RELEASE) + +latestVersion="$VERSION.$RELEASE" +currentVersion=$(nix-instantiate --eval -E "with import ./. {}; odoo.version or (lib.getVersion odoo)" | tr -d '"') + +if [[ "$currentVersion" == "$latestVersion" ]]; then + echo "odoo is up-to-date: $currentVersion" + exit 0 +fi + +cd "$(dirname "${BASH_SOURCE[0]}")" + +sed -ri "s| sha256.+ # odoo| sha256 = \"$(nix-prefetch-url --type sha256 "https://nightly.odoo.com/${VERSION}/nightly/src/odoo_${latestVersion}.tar.gz")\"; # odoo|g" default.nix +sed -ri "s| odoo_version.+| odoo_version = \"$VERSION\";|" default.nix +sed -ri "s| odoo_release.+| odoo_release = \"$RELEASE\";|" default.nix diff --git a/pkgs/applications/graphics/ImageMagick/7.0.nix b/pkgs/applications/graphics/ImageMagick/7.0.nix index 44d54014976..e15b8240476 100644 --- a/pkgs/applications/graphics/ImageMagick/7.0.nix +++ b/pkgs/applications/graphics/ImageMagick/7.0.nix @@ -45,13 +45,13 @@ in stdenv.mkDerivation rec { pname = "imagemagick"; - version = "7.1.0-33"; + version = "7.1.0-35"; src = fetchFromGitHub { owner = "ImageMagick"; repo = "ImageMagick"; rev = version; - hash = "sha256-qiXTSQcc48IIzz7RUcyOH2w8JUOTdU1zg43gJhoELXo="; + hash = "sha256-KLS7gKUVeOAA89Kfrk07JzSXEF6TH6AgfheECbWi0lE="; }; outputs = [ "out" "dev" "doc" ]; # bin/ isn't really big diff --git a/pkgs/applications/graphics/cloudcompare/default.nix b/pkgs/applications/graphics/cloudcompare/default.nix index 1d5556b6a8b..acbf572cb41 100644 --- a/pkgs/applications/graphics/cloudcompare/default.nix +++ b/pkgs/applications/graphics/cloudcompare/default.nix @@ -2,7 +2,6 @@ , stdenv , mkDerivation , fetchFromGitHub -, fetchpatch , cmake , boost , cgal_5 @@ -24,24 +23,16 @@ mkDerivation rec { pname = "cloudcompare"; - version = "2.12.0"; + version = "2.12.1"; src = fetchFromGitHub { owner = "CloudCompare"; repo = "CloudCompare"; rev = "v${version}"; - sha256 = "sha256-hu3ckVocExi9lvxelHAwKb/MZacH4CcCE+vIzElgP/A="; + sha256 = "sha256-gX07Km+DNnsz5eDAC2RueMHjmIfQvgGnNOujZ/yM/vE="; fetchSubmodules = true; }; - patches = [ - # fix issues compiling on aarch64. remove once upgraded past 2.12.0 - (fetchpatch { - url = "https://github.com/CloudCompare/CloudCompare/commit/7e71861fdbd6ea704add5ba69343f47d8fc3d5ae.patch"; - sha256 = "sha256-CRUPjxtKUbsqOyYsjKF+dRZ+E3rqrv5mS3ZaOay2wk8="; - }) - ]; - nativeBuildInputs = [ cmake eigen # header-only @@ -115,6 +106,5 @@ mkDerivation rec { license = licenses.gpl2Plus; maintainers = with maintainers; [ nh2 ]; platforms = with platforms; linux; # only tested here; might work on others - broken = stdenv.isLinux; # plugins/core/IO/qPDALIO/CMakeFiles/QPDAL_IO_PLUGIN.dir/src/LASFilter.cpp.o] Error 1 }; } diff --git a/pkgs/applications/graphics/drawio/default.nix b/pkgs/applications/graphics/drawio/default.nix index bb501947415..3e4ea214c47 100644 --- a/pkgs/applications/graphics/drawio/default.nix +++ b/pkgs/applications/graphics/drawio/default.nix @@ -11,11 +11,11 @@ stdenv.mkDerivation rec { pname = "drawio"; - version = "18.0.1"; + version = "18.0.6"; src = fetchurl { url = "https://github.com/jgraph/drawio-desktop/releases/download/v${version}/drawio-x86_64-${version}.rpm"; - sha256 = "4f3893f53e47a3937320676e02337a61c358c684d5cd0b378809b3d7deab0139"; + sha256 = "939d23f45f82bc4978ff3cb5d15d096f8af9658fb9f9211d3849998f6a0bd3a9"; }; nativeBuildInputs = [ diff --git a/pkgs/applications/graphics/drawio/headless.nix b/pkgs/applications/graphics/drawio/headless.nix new file mode 100644 index 00000000000..c70511fa652 --- /dev/null +++ b/pkgs/applications/graphics/drawio/headless.nix @@ -0,0 +1,36 @@ +{ lib, writeTextFile, runtimeShell, drawio, xvfb-run }: + +writeTextFile { + name = "${drawio.pname}-headless-${drawio.version}"; + + executable = true; + destination = "/bin/drawio"; + text = '' + #!${runtimeShell} + + # Electron really wants a configuration directory to not die with: + # "Error: Failed to get 'appData' path" + # so we give it some temp dir as XDG_CONFIG_HOME + tmpdir=$(mktemp -d) + + function cleanup { + rm -rf "$tmpdir" + } + trap cleanup EXIT + + # Drawio needs to run in a virtual X session, because Electron + # refuses to work and dies with an unhelpful error message otherwise: + # "The futex facility returned an unexpected error code." + XDG_CONFIG_HOME="$tmpdir" ${xvfb-run}/bin/xvfb-run ${drawio}/bin/drawio $@ + ''; + + meta = with lib; { + description = "xvfb wrapper around drawio"; + longDescription = '' + A wrapper around drawio for running in headless environments. + Runs drawio under xvfb-run, with configuration going to a temporary + directory. + ''; + maintainers = with maintainers; [ qyliss tfc ]; + }; +} diff --git a/pkgs/applications/graphics/grafx2/default.nix b/pkgs/applications/graphics/grafx2/default.nix index df570008b0f..48e97e7dbb3 100644 --- a/pkgs/applications/graphics/grafx2/default.nix +++ b/pkgs/applications/graphics/grafx2/default.nix @@ -15,6 +15,12 @@ stdenv.mkDerivation rec { preBuild = "cd src"; + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: ../obj/unix/tiles.o:/build/grafx2/src/global.h:306: multiple definition of + # `Main_selector'; ../obj/unix/main.o:/build/grafx2/src/global.h:306: first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + preInstall = '' mkdir -p "$out" ''; installPhase = ''make install prefix="$out"''; diff --git a/pkgs/applications/graphics/jpeg-archive/default.nix b/pkgs/applications/graphics/jpeg-archive/default.nix index b974e271a67..bd4a580cc46 100644 --- a/pkgs/applications/graphics/jpeg-archive/default.nix +++ b/pkgs/applications/graphics/jpeg-archive/default.nix @@ -21,6 +21,12 @@ stdenv.mkDerivation { substituteInPlace Makefile --replace 'LIBJPEG =' 'LIBJPEG ?=' ''; + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: src/util.o:(.bss+0x0): multiple definition of `progname'; /build/ccBZT2Za.o:(.bss+0x20): first defined here + # https://github.com/danielgtaylor/jpeg-archive/issues/119 + NIX_CFLAGS_COMPILE = "-fcommon"; + makeFlags = [ "CC=${stdenv.cc.targetPrefix}cc" "PREFIX=$(out)" diff --git a/pkgs/applications/graphics/megapixels/default.nix b/pkgs/applications/graphics/megapixels/default.nix index 9ce07df3437..7a5729de5f5 100644 --- a/pkgs/applications/graphics/megapixels/default.nix +++ b/pkgs/applications/graphics/megapixels/default.nix @@ -5,7 +5,7 @@ , meson , ninja , pkg-config -, wrapGAppsHook +, wrapGAppsHook4 , libepoxy , gtk4 , zbar @@ -41,7 +41,7 @@ stdenv.mkDerivation rec { meson ninja pkg-config - wrapGAppsHook + wrapGAppsHook4 ]; buildInputs = [ diff --git a/pkgs/applications/graphics/nomacs/default.nix b/pkgs/applications/graphics/nomacs/default.nix index 29b049ac55b..7c909de9f84 100644 --- a/pkgs/applications/graphics/nomacs/default.nix +++ b/pkgs/applications/graphics/nomacs/default.nix @@ -1,4 +1,5 @@ -{ lib +{ stdenv +, lib , mkDerivation , fetchFromGitHub , fetchpatch @@ -67,5 +68,7 @@ mkDerivation rec { maintainers = with lib.maintainers; [ mindavi ]; license = licenses.gpl3Plus; inherit (qtbase.meta) platforms; + # Broken on hydra since 2020-08-15: https://hydra.nixos.org/build/125495291 (bump from 3.16 to 3.17 prerelease) + broken = stdenv.isDarwin; }; } diff --git a/pkgs/applications/graphics/rnote/default.nix b/pkgs/applications/graphics/rnote/default.nix index f1d809388a2..98726de0604 100644 --- a/pkgs/applications/graphics/rnote/default.nix +++ b/pkgs/applications/graphics/rnote/default.nix @@ -22,20 +22,20 @@ stdenv.mkDerivation rec { pname = "rnote"; - version = "0.5.1-hotfix-1"; + version = "0.5.3"; src = fetchFromGitHub { owner = "flxzt"; repo = "rnote"; rev = "v${version}"; fetchSubmodules = true; - hash = "sha256-Oq/RKeKICyImSPr4GSNjPXZWtuRQ7+9nRfl9MmC+UYI="; + hash = "sha256-v4cca4tSv//VFUvOfemkueELxlez2TdtynqbzjCTlB4="; }; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - hash = "sha256-gdVy+7xSQVkI84Ta6KLOLR9UUsDoD2Cd0cuNU+OXf2M="; + hash = "sha256-sK8GOLxNG4mu45oQSaFi467DHYt00Pxu3vMM6Po/YqI="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/kde/fetch.sh b/pkgs/applications/kde/fetch.sh index 28d0371cd8c..d3b94c2a852 100644 --- a/pkgs/applications/kde/fetch.sh +++ b/pkgs/applications/kde/fetch.sh @@ -1 +1 @@ -WGET_ARGS=( https://download.kde.org/stable/release-service/22.04.0/src -A '*.tar.xz' ) +WGET_ARGS=( https://download.kde.org/stable/release-service/22.04.1/src -A '*.tar.xz' ) diff --git a/pkgs/applications/kde/srcs.nix b/pkgs/applications/kde/srcs.nix index 2e5c70fb4c4..7e5dff590ed 100644 --- a/pkgs/applications/kde/srcs.nix +++ b/pkgs/applications/kde/srcs.nix @@ -4,1859 +4,1859 @@ { akonadi = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/akonadi-22.04.0.tar.xz"; - sha256 = "1v4bpnd7335f6rf7sy7xv3pjgay28lf9cbhy6g63v1sv2vicrih7"; - name = "akonadi-22.04.0.tar.xz"; + url = "${mirror}/stable/release-service/22.04.1/src/akonadi-22.04.1.tar.xz"; + sha256 = "109r46dghfg84kcgq8h69m2pkd7abmq37ykgnpqynfzyrpkcvy6s"; + name = "akonadi-22.04.1.tar.xz"; }; }; akonadi-calendar = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/akonadi-calendar-22.04.0.tar.xz"; - sha256 = "0pnr2bzw7kl2mj88d75alzrsrwanrc28z7jbkmi2wqbw9jz0icy1"; - name = "akonadi-calendar-22.04.0.tar.xz"; + url = "${mirror}/stable/release-service/22.04.1/src/akonadi-calendar-22.04.1.tar.xz"; + sha256 = "1jqil45igxbii7warzil9r9lphd0vm23454zc9k0psl4zvwqd71m"; + name = "akonadi-calendar-22.04.1.tar.xz"; }; }; akonadi-calendar-tools = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/akonadi-calendar-tools-22.04.0.tar.xz"; - sha256 = "1q727irnq0gi86ynp62wlmmd9zkpywcnfrazlv2zvp1gyfnlhira"; - name = "akonadi-calendar-tools-22.04.0.tar.xz"; + url = "${mirror}/stable/release-service/22.04.1/src/akonadi-calendar-tools-22.04.1.tar.xz"; + sha256 = "1sn0355mkd8cl58nm6aspjb9jzngp7cxgj3jypyvwriv3fcm3ixj"; + name = "akonadi-calendar-tools-22.04.1.tar.xz"; }; }; akonadi-contacts = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/akonadi-contacts-22.04.0.tar.xz"; - sha256 = "0yl8rj4sbcd8nc2fjk2xgyp5mr6y39d2qdb3ig3aklkl5czbg2ml"; - name = "akonadi-contacts-22.04.0.tar.xz"; + url = "${mirror}/stable/release-service/22.04.1/src/akonadi-contacts-22.04.1.tar.xz"; + sha256 = "03ir95sghhvfxcsaz2v4wp06461xdr85iidgvpp9glfhp45cdwnd"; + name = "akonadi-contacts-22.04.1.tar.xz"; }; }; akonadi-import-wizard = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/akonadi-import-wizard-22.04.0.tar.xz"; - sha256 = "025sm93dm01msjlxsp8p364nqix9cpwy0zk86774w5lq0m7q3cmr"; - name = "akonadi-import-wizard-22.04.0.tar.xz"; + url = "${mirror}/stable/release-service/22.04.1/src/akonadi-import-wizard-22.04.1.tar.xz"; + sha256 = "0qgpzz855gfvsq30m3rw935pixpc8b732lsbzjykw6pnl73yji3j"; + name = "akonadi-import-wizard-22.04.1.tar.xz"; }; }; akonadi-mime = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/akonadi-mime-22.04.0.tar.xz"; - sha256 = "0rr8zi8xczfbmy83ds7r3gv08s5cck5w3wyz3h42b96vr7wkxbri"; - name = "akonadi-mime-22.04.0.tar.xz"; + url = "${mirror}/stable/release-service/22.04.1/src/akonadi-mime-22.04.1.tar.xz"; + sha256 = "03kx6j48rmsz0gy7w1fhs6g0xb8difd753kyv9a2di1ijkqhhn3g"; + name = "akonadi-mime-22.04.1.tar.xz"; }; }; akonadi-notes = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/akonadi-notes-22.04.0.tar.xz"; - sha256 = "0w0d7m5q5n56772yhixdfzmijlvd5l490z59mhidvcxl72iz8ka1"; - name = "akonadi-notes-22.04.0.tar.xz"; + url = "${mirror}/stable/release-service/22.04.1/src/akonadi-notes-22.04.1.tar.xz"; + sha256 = "119s7vgl8s9ik2fabky6xwq6gvj2xdq2ii0h1j6vx2x98mwwcqsk"; + name = "akonadi-notes-22.04.1.tar.xz"; }; }; akonadi-search = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/akonadi-search-22.04.0.tar.xz"; - sha256 = "1ra4vgmxghyi6j6v5nmw579ms4xiw4wcgqcm2gdq29cax7yaw5w2"; - name = "akonadi-search-22.04.0.tar.xz"; + url = "${mirror}/stable/release-service/22.04.1/src/akonadi-search-22.04.1.tar.xz"; + sha256 = "0arymd5islkmiarxppg3d4fwfrb13fzrj8dpzv7y9llgmngcn7kk"; + name = "akonadi-search-22.04.1.tar.xz"; }; }; akonadiconsole = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/akonadiconsole-22.04.0.tar.xz"; - sha256 = "10x3dg83fvsjvv652gi4c3zn6cq0c86j1p00aajxr4ailk72f3l0"; - name = "akonadiconsole-22.04.0.tar.xz"; + url = "${mirror}/stable/release-service/22.04.1/src/akonadiconsole-22.04.1.tar.xz"; + sha256 = "1yji38rzjn3pr9b1gqbx0jq8k6iiqsi6cwpzk0ak9qp02z8h7bx9"; + name = "akonadiconsole-22.04.1.tar.xz"; }; }; akregator = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/akregator-22.04.0.tar.xz"; 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+ sha256 = "0swf599kf769ad721r0lmf74g0mp68h0lxjcvy71wfnjkfgn16rl"; + name = "ktp-send-file-22.04.1.tar.xz"; }; }; ktp-text-ui = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/ktp-text-ui-22.04.0.tar.xz"; - sha256 = "1v25qqclqssdq2v9h010jib3cm5an5h7cyyrlmc4f5jx76d82rzj"; - name = "ktp-text-ui-22.04.0.tar.xz"; + url = "${mirror}/stable/release-service/22.04.1/src/ktp-text-ui-22.04.1.tar.xz"; + sha256 = "0ldgiq0amr715hivv9573gxdi6p530zjfvq1nmyn4nr3lv3k036f"; + name = "ktp-text-ui-22.04.1.tar.xz"; }; }; ktuberling = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/ktuberling-22.04.0.tar.xz"; - sha256 = "19cxpxwyzcy3vif7q5rmzzr1qa1bhql2l309psi66b4yndxs1n8q"; - name = "ktuberling-22.04.0.tar.xz"; + url = "${mirror}/stable/release-service/22.04.1/src/ktuberling-22.04.1.tar.xz"; + sha256 = "1b1ra5qxf4yba4z9hsjq1r30vfg0kgpxjmj5cpzvm0jdy5vas8j5"; + name = "ktuberling-22.04.1.tar.xz"; 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}; }; skanpage = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/skanpage-22.04.0.tar.xz"; - sha256 = "1n72796546x9fh0bhnlc43mlcrpdqlkph605f8nb7vznkpdnb8zq"; - name = "skanpage-22.04.0.tar.xz"; + url = "${mirror}/stable/release-service/22.04.1/src/skanpage-22.04.1.tar.xz"; + sha256 = "1w3w3h58arjmkfp63rgzzgzyl44wkv53dqsp43ny1yk8zyfw6cih"; + name = "skanpage-22.04.1.tar.xz"; }; }; spectacle = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/spectacle-22.04.0.tar.xz"; - sha256 = "07dx9jg9i5s1cg0zsz9s06qipz80dv0bq2q1dfy82p6xrji30pdc"; - name = "spectacle-22.04.0.tar.xz"; + url = "${mirror}/stable/release-service/22.04.1/src/spectacle-22.04.1.tar.xz"; + sha256 = "111q8jg925spgmij52vq17pdiw1wsxrw654ns2yj6vcnf2mwjnrk"; + name = "spectacle-22.04.1.tar.xz"; }; }; step = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/step-22.04.0.tar.xz"; - sha256 = "007zbkg8gg56f733wp2dbb0xskja5c6pm3n181lirqq831ai9rnb"; - name = "step-22.04.0.tar.xz"; + url = "${mirror}/stable/release-service/22.04.1/src/step-22.04.1.tar.xz"; + sha256 = "03dwp4xg84a3q79gmqlqb5idaybl3k5na5d47668zfv8hw5kwz1m"; + name = "step-22.04.1.tar.xz"; }; }; svgpart = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/svgpart-22.04.0.tar.xz"; - sha256 = "16nz12sc1zgyaa6rilqymfcw0waj0ha8xydlsbgv83v1wqlxlfwj"; - name = "svgpart-22.04.0.tar.xz"; + url = "${mirror}/stable/release-service/22.04.1/src/svgpart-22.04.1.tar.xz"; + sha256 = "1738p2k9j9lckav86fqm57i6aszwdhin7nja7dx1g637w0a96nsy"; + name = "svgpart-22.04.1.tar.xz"; }; }; sweeper = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/sweeper-22.04.0.tar.xz"; - sha256 = "1fvjq1pcqnadpvkh5jdlb62l54x7r99zshd59jdxy6h7fji3pkbs"; - name = "sweeper-22.04.0.tar.xz"; + url = "${mirror}/stable/release-service/22.04.1/src/sweeper-22.04.1.tar.xz"; + sha256 = "10719rj6pwjq6k8n60x4vg08rvy4pwnf9g2p6warp4mzkwhdn4fh"; + name = "sweeper-22.04.1.tar.xz"; }; }; umbrello = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/umbrello-22.04.0.tar.xz"; - sha256 = "1n3jvsrzmfzm7x9f125hsf8i80r0iiqzv80ddc7fpzdyxpd83xpl"; - name = "umbrello-22.04.0.tar.xz"; + url = "${mirror}/stable/release-service/22.04.1/src/umbrello-22.04.1.tar.xz"; + sha256 = "01jk3w17prvqljrn3lfk1j3ifaf59wp917527idnk3yhl6k6abdz"; + name = "umbrello-22.04.1.tar.xz"; }; }; yakuake = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/yakuake-22.04.0.tar.xz"; - sha256 = "01i0ddgz81mzqlnj6cvslzv2h1nbz238hg75izfpbajvzm46pydp"; - name = "yakuake-22.04.0.tar.xz"; + url = "${mirror}/stable/release-service/22.04.1/src/yakuake-22.04.1.tar.xz"; + sha256 = "1c61cpp8dai5bb3mcdry12iibz1mni3bhnwnsdb2v9kaf0vrhf2k"; + name = "yakuake-22.04.1.tar.xz"; }; }; zanshin = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/zanshin-22.04.0.tar.xz"; - sha256 = "1d0sn9km4xdxs28avhxpc1xpkm5bcmg8i06x97xvls4cxh3nbgm9"; - name = "zanshin-22.04.0.tar.xz"; + url = "${mirror}/stable/release-service/22.04.1/src/zanshin-22.04.1.tar.xz"; + sha256 = "0frza7k4fmwkpdaxinnza021wqri1llhpasdphbwx539sxpbwlv8"; + name = "zanshin-22.04.1.tar.xz"; }; }; zeroconf-ioslave = { - version = "22.04.0"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/release-service/22.04.0/src/zeroconf-ioslave-22.04.0.tar.xz"; - sha256 = "0nppr0qm5aqail1y370b26ky9snz033j3ij9sykc1yq9il8kkpp4"; - name = "zeroconf-ioslave-22.04.0.tar.xz"; + url = "${mirror}/stable/release-service/22.04.1/src/zeroconf-ioslave-22.04.1.tar.xz"; + sha256 = "1bswkxjw0djp60k6wp0jyfz27pvzcvgdkp4219lzf5kxyj6ln1dk"; + name = "zeroconf-ioslave-22.04.1.tar.xz"; }; }; } diff --git a/pkgs/applications/office/buho/default.nix b/pkgs/applications/maui/buho.nix index 997b1c9d502..481779a6cab 100644 --- a/pkgs/applications/office/buho/default.nix +++ b/pkgs/applications/maui/buho.nix @@ -1,6 +1,5 @@ { lib , mkDerivation -, fetchFromGitLab , cmake , extra-cmake-modules , applet-window-buttons @@ -17,17 +16,8 @@ , qtquickcontrols2 }: -mkDerivation rec { +mkDerivation { pname = "buho"; - version = "2.1.1"; - - src = fetchFromGitLab { - domain = "invent.kde.org"; - owner = "maui"; - repo = "buho"; - rev = "v${version}"; - sha256 = "sha256-rHjjvjRY2WsyZfj3fzp46copZ1g2ae6PVv9lBNZDzcI="; - }; nativeBuildInputs = [ cmake diff --git a/pkgs/applications/video/clip/default.nix b/pkgs/applications/maui/clip.nix index 43f9437c57a..10df8c47dfc 100644 --- a/pkgs/applications/video/clip/default.nix +++ b/pkgs/applications/maui/clip.nix @@ -1,6 +1,5 @@ { lib , mkDerivation -, fetchFromGitLab , cmake , extra-cmake-modules , applet-window-buttons @@ -17,17 +16,8 @@ , ffmpeg }: -mkDerivation rec { +mkDerivation { pname = "clip"; - version = "2.1.1"; - - src = fetchFromGitLab { - domain = "invent.kde.org"; - owner = "maui"; - repo = "clip"; - rev = "v${version}"; - sha256 = "sha256-vW3A0PKJSC2QNs+QVZ9w0g4aVmcndhahrpkd4wWoUko="; - }; nativeBuildInputs = [ cmake diff --git a/pkgs/tools/misc/communicator/default.nix b/pkgs/applications/maui/communicator.nix index fd48360ba73..3fec87d1f51 100644 --- a/pkgs/tools/misc/communicator/default.nix +++ b/pkgs/applications/maui/communicator.nix @@ -1,6 +1,5 @@ { lib , mkDerivation -, fetchFromGitLab , cmake , extra-cmake-modules , applet-window-buttons @@ -19,17 +18,8 @@ , kcontacts }: -mkDerivation rec { +mkDerivation { pname = "communicator"; - version = "2.1.1"; - - src = fetchFromGitLab { - domain = "invent.kde.org"; - owner = "maui"; - repo = "communicator"; - rev = "v${version}"; - sha256 = "sha256-tHuFQgssZ6bohELx8tHrd4vvnrWixTyqCqK8WKJEdRE="; - }; nativeBuildInputs = [ cmake diff --git a/pkgs/applications/maui/default.nix b/pkgs/applications/maui/default.nix new file mode 100644 index 00000000000..97cc9a92e6d --- /dev/null +++ b/pkgs/applications/maui/default.nix @@ -0,0 +1,82 @@ +/* + +# New packages + +READ THIS FIRST + +This module is for the MauiKit framework and official Maui applications. All +available packages are listed in `callPackage ./srcs.nix`, although some are not yet +packaged in Nixpkgs. + +IF YOUR PACKAGE IS NOT LISTED IN `callPackage ./srcs.nix`, IT DOES NOT GO HERE. + +See also `pkgs/applications/kde` as this is what this is based on. + +# Updates + +1. Update the URL in `callPackage ./fetch.sh`. +2. Run `callPackage ./maintainers/scripts/fetch-kde-qt.sh pkgs/applications/maui` + from the top of the Nixpkgs tree. +3. Use `nixpkgs-review wip` to check that everything builds. +4. Commit the changes and open a pull request. + +*/ + +{ lib +, libsForQt5 +, fetchurl +}: + +let + minQtVersion = "5.15"; + broken = lib.versionOlder libsForQt5.qtbase.version minQtVersion; + + mirror = "mirror://kde"; + srcs = import ./srcs.nix { inherit fetchurl mirror; }; + + mkDerivation = args: + let + inherit (args) pname; + inherit (srcs.${pname}) src version; + mkDerivation = + libsForQt5.callPackage ({ mkDerivation }: mkDerivation) {}; + in + mkDerivation (args // { + inherit pname version src; + + outputs = args.outputs or [ "out" ]; + + meta = + let meta = args.meta or {}; in + meta // { + homepage = meta.homepage or "https://mauikit.org/"; + platforms = meta.platforms or lib.platforms.linux; + broken = meta.broken or broken; + }; + }); + + packages = self: with self; + let + callPackage = self.newScope { + inherit mkDerivation; + }; + in { + # libraries + mauikit = callPackage ./mauikit.nix { }; + mauikit-accounts = callPackage ./mauikit-accounts.nix { }; + mauikit-filebrowsing = callPackage ./mauikit-filebrowsing.nix { }; + mauikit-imagetools = callPackage ./mauikit-imagetools.nix { }; + mauikit-texteditor = callPackage ./mauikit-texteditor.nix { }; + + # applications + buho = callPackage ./buho.nix { }; + clip = callPackage ./clip.nix { }; + communicator = callPackage ./communicator.nix { }; + index = callPackage ./index.nix { }; + nota = callPackage ./nota.nix { }; + pix = callPackage ./pix.nix { }; + shelf = callPackage ./shelf.nix { }; + vvave = callPackage ./vvave.nix { }; + }; + +in lib.makeScope libsForQt5.newScope packages diff --git a/pkgs/applications/maui/fetch.sh b/pkgs/applications/maui/fetch.sh new file mode 100644 index 00000000000..cc163d289e0 --- /dev/null +++ b/pkgs/applications/maui/fetch.sh @@ -0,0 +1 @@ +WGET_ARGS=( https://download.kde.org/stable/maui/ -A '*-2.1.2.tar.xz' ) diff --git a/pkgs/applications/misc/index-fm/default.nix b/pkgs/applications/maui/index.nix index 7414fb2a7e2..bc223adb4b1 100644 --- a/pkgs/applications/misc/index-fm/default.nix +++ b/pkgs/applications/maui/index.nix @@ -1,6 +1,5 @@ { lib , mkDerivation -, fetchFromGitLab , cmake , extra-cmake-modules , karchive @@ -14,17 +13,8 @@ , qtquickcontrols2 }: -mkDerivation rec { +mkDerivation { pname = "index-fm"; - version = "2.1.1"; - - src = fetchFromGitLab { - domain = "invent.kde.org"; - owner = "maui"; - repo = "index-fm"; - rev = "v${version}"; - hash = "sha256-F4qgewkPxkbAbeR+MaeRDiw9KIsd/Xx4C0cYEYDkPOE="; - }; postPatch = '' substituteInPlace CMakeLists.txt \ diff --git a/pkgs/development/libraries/mauikit-accounts/default.nix b/pkgs/applications/maui/mauikit-accounts.nix index a102bd7f36a..24308b76248 100644 --- a/pkgs/development/libraries/mauikit-accounts/default.nix +++ b/pkgs/applications/maui/mauikit-accounts.nix @@ -1,6 +1,5 @@ { lib , mkDerivation -, fetchFromGitLab , cmake , extra-cmake-modules , kconfig @@ -8,17 +7,8 @@ , mauikit }: -mkDerivation rec { +mkDerivation { pname = "mauikit-accounts"; - version = "2.1.1"; - - src = fetchFromGitLab { - domain = "invent.kde.org"; - owner = "maui"; - repo = "mauikit-accounts"; - rev = "v${version}"; - sha256 = "sha256-B0VmgE0L8kBOqR/lrWCHO3psCQ7GZVPIGljGAwpuymE="; - }; nativeBuildInputs = [ cmake @@ -34,7 +24,7 @@ mkDerivation rec { meta = with lib; { homepage = "https://invent.kde.org/maui/mauikit-accounts"; description = "MauiKit utilities to handle User Accounts"; - license = licenses.lgpl2Plus; + license = licenses.lgpl21Plus; maintainers = with maintainers; [ onny ]; }; } diff --git a/pkgs/development/libraries/mauikit-filebrowsing/default.nix b/pkgs/applications/maui/mauikit-filebrowsing.nix index 90053b16fc8..d8be881f764 100644 --- a/pkgs/development/libraries/mauikit-filebrowsing/default.nix +++ b/pkgs/applications/maui/mauikit-filebrowsing.nix @@ -1,6 +1,5 @@ { lib , mkDerivation -, fetchFromGitLab , cmake , extra-cmake-modules , kconfig @@ -8,17 +7,8 @@ , mauikit }: -mkDerivation rec { +mkDerivation { pname = "mauikit-filebrowsing"; - version = "2.1.1"; - - src = fetchFromGitLab { - domain = "invent.kde.org"; - owner = "maui"; - repo = "mauikit-filebrowsing"; - rev = "v${version}"; - hash = "sha256-2LzGvjh2t4RVZS9Js7ky3hM51L7bx0SHmDlKKPjl3LM="; - }; nativeBuildInputs = [ cmake @@ -34,7 +24,7 @@ mkDerivation rec { meta = with lib; { homepage = "https://invent.kde.org/maui/mauikit-filebrowsing"; description = "MauiKit File Browsing utilities and controls"; - license = licenses.lgpl2Plus; + license = licenses.lgpl21Plus; maintainers = with maintainers; [ dotlambda ]; }; } diff --git a/pkgs/applications/maui/mauikit-imagetools.nix b/pkgs/applications/maui/mauikit-imagetools.nix new file mode 100644 index 00000000000..3788c50cd44 --- /dev/null +++ b/pkgs/applications/maui/mauikit-imagetools.nix @@ -0,0 +1,36 @@ +{ lib +, mkDerivation +, cmake +, extra-cmake-modules +, kconfig +, kio +, mauikit +, qtlocation +, exiv2 +, kquickimageedit +}: + +mkDerivation { + pname = "mauikit-imagetools"; + + nativeBuildInputs = [ + cmake + extra-cmake-modules + ]; + + buildInputs = [ + kconfig + kio + mauikit + qtlocation + exiv2 + kquickimageedit + ]; + + meta = with lib; { + homepage = "https://invent.kde.org/maui/mauikit-imagetools"; + description = "MauiKit Image Tools Components"; + license = licenses.lgpl21Plus; + maintainers = with maintainers; [ onny ]; + }; +} diff --git a/pkgs/development/libraries/mauikit-texteditor/default.nix b/pkgs/applications/maui/mauikit-texteditor.nix index a405fd851bd..75826c2079a 100644 --- a/pkgs/development/libraries/mauikit-texteditor/default.nix +++ b/pkgs/applications/maui/mauikit-texteditor.nix @@ -1,6 +1,5 @@ { lib , mkDerivation -, fetchFromGitLab , cmake , extra-cmake-modules , kconfig @@ -9,17 +8,8 @@ , syntax-highlighting }: -mkDerivation rec { +mkDerivation { pname = "mauikit-texteditor"; - version = "2.1.1"; - - src = fetchFromGitLab { - domain = "invent.kde.org"; - owner = "maui"; - repo = "mauikit-texteditor"; - rev = "v${version}"; - sha256 = "sha256-C0EOc0CE6Ef7vnmOKRqTzeJUamGXsvREpHRPGTcAaIc="; - }; nativeBuildInputs = [ cmake @@ -36,7 +26,7 @@ mkDerivation rec { meta = with lib; { homepage = "https://invent.kde.org/maui/mauikit-texteditor"; description = "MauiKit Text Editor components"; - license = licenses.lgpl2Plus; + license = licenses.lgpl21Plus; maintainers = with maintainers; [ onny ]; }; } diff --git a/pkgs/development/libraries/mauikit/default.nix b/pkgs/applications/maui/mauikit.nix index 22e3748fe48..76f2f7db5d7 100644 --- a/pkgs/development/libraries/mauikit/default.nix +++ b/pkgs/applications/maui/mauikit.nix @@ -1,6 +1,5 @@ { lib , mkDerivation -, fetchFromGitLab , cmake , extra-cmake-modules , kconfig @@ -12,17 +11,8 @@ , qtx11extras }: -mkDerivation rec { +mkDerivation { pname = "mauikit"; - version = "2.1.1"; - - src = fetchFromGitLab { - domain = "invent.kde.org"; - owner = "maui"; - repo = "mauikit"; - rev = "v${version}"; - hash = "sha256-INvh+J484xkAsNGtYdf8NGGpFGp2AG7s9UYESoem3QY="; - }; nativeBuildInputs = [ cmake @@ -41,8 +31,7 @@ mkDerivation rec { meta = with lib; { homepage = "https://mauikit.org/"; description = "Free and modular front-end framework for developing fast and compelling user experiences"; - license = licenses.lgpl2Plus; + license = licenses.gpl2Plus; maintainers = with maintainers; [ dotlambda ]; - broken = versionOlder qtbase.version "5.15.0"; }; } diff --git a/pkgs/applications/editors/maui-nota/default.nix b/pkgs/applications/maui/nota.nix index 9664aab2b2c..cdf4943df5f 100644 --- a/pkgs/applications/editors/maui-nota/default.nix +++ b/pkgs/applications/maui/nota.nix @@ -1,6 +1,5 @@ { lib , mkDerivation -, fetchFromGitLab , cmake , extra-cmake-modules , applet-window-buttons @@ -16,17 +15,8 @@ , qtquickcontrols2 }: -mkDerivation rec { +mkDerivation { pname = "nota"; - version = "2.1.1"; - - src = fetchFromGitLab { - domain = "invent.kde.org"; - owner = "maui"; - repo = "nota"; - rev = "v${version}"; - sha256 = "sha256-Sgpm5njhQDe9ohAVFcN5iPNC6v9+QZnGRPYxuLvUno8="; - }; nativeBuildInputs = [ cmake diff --git a/pkgs/applications/maui/pix.nix b/pkgs/applications/maui/pix.nix new file mode 100644 index 00000000000..6794da74c3a --- /dev/null +++ b/pkgs/applications/maui/pix.nix @@ -0,0 +1,52 @@ +{ lib +, mkDerivation +, cmake +, extra-cmake-modules +, applet-window-buttons +, karchive +, kcoreaddons +, ki18n +, kio +, kirigami2 +, mauikit +, mauikit-filebrowsing +, mauikit-imagetools +, qtmultimedia +, qtquickcontrols2 +, qtlocation +, exiv2 +, kquickimageedit +}: + +mkDerivation { + pname = "pix"; + + nativeBuildInputs = [ + cmake + extra-cmake-modules + ]; + + buildInputs = [ + applet-window-buttons + karchive + kcoreaddons + ki18n + kio + kirigami2 + mauikit + mauikit-filebrowsing + mauikit-imagetools + qtmultimedia + qtquickcontrols2 + qtlocation + exiv2 + kquickimageedit + ]; + + meta = with lib; { + description = "Image gallery application"; + homepage = "https://invent.kde.org/maui/pix"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ onny ]; + }; +} diff --git a/pkgs/applications/office/shelf/default.nix b/pkgs/applications/maui/shelf.nix index 7ad3b915188..3942b9a34d6 100644 --- a/pkgs/applications/office/shelf/default.nix +++ b/pkgs/applications/maui/shelf.nix @@ -1,6 +1,5 @@ { lib , mkDerivation -, fetchFromGitLab , cmake , extra-cmake-modules , applet-window-buttons @@ -17,17 +16,8 @@ , poppler }: -mkDerivation rec { +mkDerivation { pname = "shelf"; - version = "2.1.1"; - - src = fetchFromGitLab { - domain = "invent.kde.org"; - owner = "maui"; - repo = "shelf"; - rev = "v${version}"; - sha256 = "sha256-0a5UHrYrkLR35cezjin+K9cTk3+aLeUAkvBbmKMK61w="; - }; nativeBuildInputs = [ cmake diff --git a/pkgs/applications/maui/srcs.nix b/pkgs/applications/maui/srcs.nix new file mode 100644 index 00000000000..a432814d49e --- /dev/null +++ b/pkgs/applications/maui/srcs.nix @@ -0,0 +1,118 @@ +# DO NOT EDIT! This file is generated automatically. +# Command: ./maintainers/scripts/fetch-kde-qt.sh pkgs/applications/maui +{ fetchurl, mirror }: + +{ + buho = { + version = "2.1.2"; + src = fetchurl { + url = "${mirror}/stable/maui/buho/2.1.2/buho-2.1.2.tar.xz"; + sha256 = "0xc623w1zp0yh929b8h6mf9r4frnfabd30634ba43x4ac12jk7g8"; + name = "buho-2.1.2.tar.xz"; + }; + }; + clip = { + version = "2.1.2"; + src = fetchurl { + url = "${mirror}/stable/maui/clip/2.1.2/clip-2.1.2.tar.xz"; + sha256 = "168lz2qi4y56pwfwyzqnhwz4lgh2763w260l860527aw049crv4z"; + name = "clip-2.1.2.tar.xz"; + }; + }; + communicator = { + version = "2.1.2"; + src = fetchurl { + url = "${mirror}/stable/maui/communicator/2.1.2/communicator-2.1.2.tar.xz"; + sha256 = "0m7axdjpl7s9cz6fcaj4kwr9wdxybwdb76k9rz5yigyy35vigcfi"; + name = "communicator-2.1.2.tar.xz"; + }; + }; + index-fm = { + version = "2.1.2"; + src = fetchurl { + url = "${mirror}/stable/maui/index/2.1.2/index-fm-2.1.2.tar.xz"; + sha256 = "1yawnzx51h6yrlnivbwz9d7481k382pzg3jnczrajfjnv7ir29dn"; + name = "index-fm-2.1.2.tar.xz"; + }; + }; + mauikit = { + version = "2.1.2"; + src = fetchurl { + url = "${mirror}/stable/maui/mauikit/2.1.2/mauikit-2.1.2.tar.xz"; + sha256 = "1n5p8107lwa4m5gbwlcqmmdlyw15vjaq0dfaz5zal733s6rq2gm7"; + name = "mauikit-2.1.2.tar.xz"; + }; + }; + mauikit-accounts = { + version = "2.1.2"; + src = fetchurl { + url = "${mirror}/stable/maui/mauikit-accounts/2.1.2/mauikit-accounts-2.1.2.tar.xz"; + sha256 = "00nc54gi34r8z6cwa0h8490gd0w01a245rh2g4d9fvbkrybwg7sk"; + name = "mauikit-accounts-2.1.2.tar.xz"; + }; + }; + mauikit-filebrowsing = { + version = "2.1.2"; + src = fetchurl { + url = "${mirror}/stable/maui/mauikit-filebrowsing/2.1.2/mauikit-filebrowsing-2.1.2.tar.xz"; + sha256 = "09pfjr449mkf27ywmwsvflzq0dgaiprw8b2lcms3m5ad7i6jvvyq"; + name = "mauikit-filebrowsing-2.1.2.tar.xz"; + }; + }; + mauikit-imagetools = { + version = "2.1.2"; + src = fetchurl { + url = "${mirror}/stable/maui/mauikit-imagetools/2.1.2/mauikit-imagetools-2.1.2.tar.xz"; + sha256 = "1830x8xwyjs7bj0qi63pl1dk5h2qi6f84mki1schviddddq5cv6j"; + name = "mauikit-imagetools-2.1.2.tar.xz"; + }; + }; + mauikit-texteditor = { + version = "2.1.2"; + src = fetchurl { + url = "${mirror}/stable/maui/mauikit-texteditor/2.1.2/mauikit-texteditor-2.1.2.tar.xz"; + sha256 = "19z9qry56h2624kdx5xnfjzd3spv5shc87p2m6ix33x9mmrf92p1"; + name = "mauikit-texteditor-2.1.2.tar.xz"; + }; + }; + nota = { + version = "2.1.2"; + src = fetchurl { + url = "${mirror}/stable/maui/nota/2.1.2/nota-2.1.2.tar.xz"; + sha256 = "11z1mw6yhwin3wj19gj9495az4p40yjkwrn0nb6i8h9b0nh44pn7"; + name = "nota-2.1.2.tar.xz"; + }; + }; + pix = { + version = "2.1.2"; + src = fetchurl { + url = "${mirror}/stable/maui/pix/2.1.2/pix-2.1.2.tar.xz"; + sha256 = "0ycpazi267pl4l178i34lwzc0ssjklp0indz79r7mcfpr1vicz1s"; + name = "pix-2.1.2.tar.xz"; + }; + }; + shelf = { + version = "2.1.2"; + src = fetchurl { + url = "${mirror}/stable/maui/shelf/2.1.2/shelf-2.1.2.tar.xz"; + sha256 = "0f3781l8wfbpj0irmri0zkp3ia3qlik4aaq3w6qk97xjv24d98xh"; + name = "shelf-2.1.2.tar.xz"; + }; + }; + station = { + version = "2.1.2"; + src = fetchurl { + url = "${mirror}/stable/maui/station/2.1.2/station-2.1.2.tar.xz"; + sha256 = "0lrw7rf8i277nl9bwyx5sc05bswgll00k1jzad1i69rwdfiy9ghg"; + name = "station-2.1.2.tar.xz"; + }; + }; + vvave = { + version = "2.1.2"; + src = fetchurl { + url = "${mirror}/stable/maui/vvave/2.1.2/vvave-2.1.2.tar.xz"; + sha256 = "14b6b034899vyvvhzl2jqifqq715lb26dnw3d5wxzxhdplfd7pdf"; + name = "vvave-2.1.2.tar.xz"; + }; + }; +} diff --git a/pkgs/applications/video/vvave/default.nix b/pkgs/applications/maui/vvave.nix index 1612ce42001..bd5b9729201 100644 --- a/pkgs/applications/video/vvave/default.nix +++ b/pkgs/applications/maui/vvave.nix @@ -1,6 +1,5 @@ { lib , mkDerivation -, fetchFromGitLab , cmake , extra-cmake-modules , applet-window-buttons @@ -17,17 +16,8 @@ , taglib }: -mkDerivation rec { +mkDerivation { pname = "vvave"; - version = "2.1.1"; - - src = fetchFromGitLab { - domain = "invent.kde.org"; - owner = "maui"; - repo = "vvave"; - rev = "v${version}"; - sha256 = "sha256-ykX1kd3106KTDTJQIGk6miSgbj+oROiXQl/nkCjTphE="; - }; nativeBuildInputs = [ cmake diff --git a/pkgs/applications/misc/authenticator/default.nix b/pkgs/applications/misc/authenticator/default.nix index ffa34d041e9..d7cf8f34b83 100644 --- a/pkgs/applications/misc/authenticator/default.nix +++ b/pkgs/applications/misc/authenticator/default.nix @@ -3,19 +3,21 @@ , fetchFromGitLab , fetchpatch , appstream-glib +, clang , desktop-file-utils , meson , ninja , pkg-config -, python3 , rustPlatform -, wrapGAppsHook +, wrapGAppsHook4 , gdk-pixbuf , glib , gst_all_1 , gtk4 , libadwaita +, libclang , openssl +, pipewire , sqlite , wayland , zbar @@ -23,34 +25,30 @@ stdenv.mkDerivation rec { pname = "authenticator"; - version = "4.0.3"; + version = "4.1.1"; src = fetchFromGitLab { domain = "gitlab.gnome.org"; owner = "World"; repo = "Authenticator"; rev = version; - sha256 = "0fvs76f3fm5pxn7wg6sjbqpgip5w2j7xrh4siasdcl2bx6vsld8b"; + hash = "sha256-wl7wyj0vVDkOB7XKQFOEFzCmffTsrUsaM83fWgZ6tG0="; }; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - sha256 = "1s97jyszxf24rs3ni11phiyvmp1wm8sicb0rh1jgwz4bn1cnakx4"; + hash = "sha256-3SzemDjLsZUXPPtSlDMBQXQf5P3Sz8caJL73mHRv1js="; }; - postPatch = '' - patchShebangs build-aux - ''; - nativeBuildInputs = [ appstream-glib + clang desktop-file-utils meson ninja pkg-config - python3 - wrapGAppsHook + wrapGAppsHook4 ] ++ (with rustPlatform; [ cargoSetupHook rust.cargo @@ -62,39 +60,23 @@ stdenv.mkDerivation rec { glib gst_all_1.gstreamer gst_all_1.gst-plugins-base - - # gst-plugins-good needs gtk4 support: - # https://gitlab.freedesktop.org/gstreamer/gst-plugins-good/-/merge_requests/767 - # We copy the way it is built from the Flatpak: - # https://gitlab.gnome.org/World/Authenticator/-/blob/master/build-aux/com.belmoussaoui.Authenticator.Devel.json - (gst_all_1.gst-plugins-good.overrideAttrs (old: { - patches = old.patches or [ ] ++ [ - "${src}/build-aux/767.patch" - ]; - mesonFlags = old.mesonFlags ++ [ - "-Dgtk3=disabled" - "-Dgtk4=enabled" - "-Dgtk4-experiments=true" - ]; - buildInputs = old.buildInputs ++ [ - gtk4 - ]; - })) - (gst_all_1.gst-plugins-bad.override { enableZbar = true; }) gtk4 libadwaita openssl + pipewire sqlite wayland zbar ]; - meta = with lib; { - broken = true; # https://gitlab.gnome.org/World/Authenticator/-/issues/271 + LIBCLANG_PATH = "${lib.getLib libclang}/lib"; + + meta = { description = "Two-factor authentication code generator for GNOME"; homepage = "https://gitlab.gnome.org/World/Authenticator"; - license = licenses.gpl3Plus; - maintainers = with maintainers; [ dotlambda ]; + license = lib.licenses.gpl3Plus; + maintainers = with lib.maintainers; [ dotlambda ]; + platforms = lib.platforms.linux; }; } diff --git a/pkgs/applications/misc/autospotting/default.nix b/pkgs/applications/misc/autospotting/default.nix index 47cf2e6b07e..a0bc7ba01a9 100644 --- a/pkgs/applications/misc/autospotting/default.nix +++ b/pkgs/applications/misc/autospotting/default.nix @@ -1,29 +1,28 @@ -{ lib, buildGoPackage, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub }: -buildGoPackage { +buildGoModule rec { pname = "autospotting"; - version = "unstable-2018-11-17"; - goPackagePath = "github.com/AutoSpotting/AutoSpotting"; + version = "unstable-2022-02-17"; src = fetchFromGitHub { - owner = "AutoSpotting"; + owner = "cloudutil"; repo = "AutoSpotting"; - rev = "122ab8f292a2f718dd85e79ec22acd455122907e"; - sha256 = "0p48lgig9kblxvgq1kggczkn4qdbx6ciq9c8x0179i80vl4jf7v6"; + rev = "f295a1f86c4a21144fc7fe28a69da5668fb7ad0c"; + sha256 = "sha256-n5R5RM2fv3JWqtbSsyb7GWS4032dkgcihAKbpjB/5PM="; }; - # patching path where repository used to exist - postPatch = '' - sed -i "s+github.com/cristim/autospotting/core+github.com/AutoSpotting/AutoSpotting/core+" autospotting.go - ''; + vendorSha256 = "sha256-w7OHGZ7zntu8ZlI5gA19Iq7TKR23BQk9KpkUO+njL9Q="; + + excludedPackages = [ "scripts" ]; + + ldflags = [ "-s" "-w" ]; meta = with lib; { - homepage = "https://github.com/AutoSpotting/AutoSpotting"; description = "Automatically convert your existing AutoScaling groups to up to 90% cheaper spot instances with minimal configuration changes"; - license = licenses.free; - maintainers = [ maintainers.costrouc ]; + homepage = "https://github.com/cloudutil/AutoSpotting"; + license = licenses.osl3; + maintainers = with maintainers; [ costrouc ]; mainProgram = "AutoSpotting"; platforms = platforms.unix; }; - } diff --git a/pkgs/applications/misc/bibletime/default.nix b/pkgs/applications/misc/bibletime/default.nix index 17617223620..f55b6ef7914 100644 --- a/pkgs/applications/misc/bibletime/default.nix +++ b/pkgs/applications/misc/bibletime/default.nix @@ -1,29 +1,49 @@ -{ lib, mkDerivation, fetchurl, cmake, pkg-config, sword, boost, clucene_core -, qtbase, qttools, qtsvg, perlPackages, docbook_xml_dtd_45 -, docbook_xsl_ns }: +{ lib, mkDerivation +, fetchFromGitHub +, cmake +, docbook_xml_dtd_45 +, pkg-config +, wrapQtAppsHook +, boost +, clucene_core_2 +, docbook_xsl_ns +, perlPackages +, qtbase +, qtsvg +, qttools +, sword +}: mkDerivation rec { pname = "bibletime"; version = "3.0.2"; - src = fetchurl { - url = "https://github.com/bibletime/bibletime/releases/download/v${version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-/JNjnU/DGD4YRtrKzX7t6MgNCZYihdgTJc+Jbr9IYJ4="; + src = fetchFromGitHub { + owner = "bibletime"; + repo = "bibletime"; + rev = "v${version}"; + hash = "sha256-8X5LkquALFnG0yRayZYjeymHDcOzINBv0MXeVBsOnfI="; }; - nativeBuildInputs = [ cmake pkg-config docbook_xml_dtd_45 ]; + nativeBuildInputs = [ + cmake + docbook_xml_dtd_45 + pkg-config + wrapQtAppsHook + ]; + buildInputs = [ - sword boost - clucene_core + clucene_core_2 + perlPackages.Po4a qtbase - qttools qtsvg - perlPackages.Po4a + qttools + sword ]; preConfigure = '' - export CLUCENE_HOME=${clucene_core}; + export CLUCENE_HOME=${clucene_core_2}; export SWORD_HOME=${sword}; ''; @@ -35,7 +55,7 @@ mkDerivation rec { ]; meta = with lib; { - description = "A Qt4 Bible study tool"; + description = "A powerful cross platform Bible study tool"; homepage = "http://www.bibletime.info/"; platforms = platforms.linux; license = licenses.gpl2Plus; diff --git a/pkgs/applications/misc/bottles/default.nix b/pkgs/applications/misc/bottles/default.nix index 242fc499b65..bff4e724f61 100644 --- a/pkgs/applications/misc/bottles/default.nix +++ b/pkgs/applications/misc/bottles/default.nix @@ -20,13 +20,13 @@ let in python3Packages.buildPythonApplication rec { pname = "bottles"; - version = "2022.5.2-trento"; + version = "2022.5.14-trento-1"; src = fetchFromGitHub { owner = "bottlesdevs"; repo = pname; rev = version; - sha256 = "sha256-9auQm8rmySjPQmhueGMRj4DsQiKhCGtE97byc/h+v84="; + sha256 = "sha256-w5nSMJnt4WO1KOJvdjM1TYSOvPnogERgQWp1JVr3TZY="; }; postPatch = '' diff --git a/pkgs/applications/misc/cataract/build.nix b/pkgs/applications/misc/cataract/build.nix index 0adab84830d..2c369e64b5d 100644 --- a/pkgs/applications/misc/cataract/build.nix +++ b/pkgs/applications/misc/cataract/build.nix @@ -26,6 +26,12 @@ stdenv.mkDerivation { sed -i 's|#include <exiv2/exif.hpp>|#include <exiv2/exiv2.hpp>|' src/jpeg-utils.cpp ''; + # Add workaround for -fno-common toolchains like upstream gcc-10 to + # avoid build failures like: + # ld: stats.o:/build/cataract-675e647/src/stats.h:24: multiple definition of + # `stats_images'; cgg.o:/build/cataract-675e647/src/stats.h:24: first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + installPhase = '' mkdir $out/{bin,share} -p cp src/cgg{,-dirgen} $out/bin/ diff --git a/pkgs/applications/misc/chrysalis/default.nix b/pkgs/applications/misc/chrysalis/default.nix index 058a0f656fb..f97d44d1ea8 100644 --- a/pkgs/applications/misc/chrysalis/default.nix +++ b/pkgs/applications/misc/chrysalis/default.nix @@ -1,4 +1,4 @@ -{ lib, appimageTools, fetchurl, gtk3, gsettings-desktop-schemas }: +{ lib, appimageTools, fetchurl }: let pname = "chrysalis"; @@ -14,10 +14,6 @@ in appimageTools.wrapAppImage rec { }; }; - profile = '' - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS - ''; - multiPkgs = null; extraPkgs = p: (appimageTools.defaultFhsEnvArgs.multiPkgs p) ++ [ p.glib diff --git a/pkgs/applications/misc/crow-translate/default.nix b/pkgs/applications/misc/crow-translate/default.nix index 09a7595765d..dfd072fa5d9 100644 --- a/pkgs/applications/misc/crow-translate/default.nix +++ b/pkgs/applications/misc/crow-translate/default.nix @@ -1,11 +1,11 @@ { lib , stdenv -, nix-update-script -, fetchFromGitHub +, fetchzip , substituteAll , cmake , extra-cmake-modules , qttools +, kwayland , leptonica , tesseract4 , qtmultimedia @@ -16,14 +16,11 @@ stdenv.mkDerivation rec { pname = "crow-translate"; - version = "2.9.5"; + version = "2.9.8"; - src = fetchFromGitHub { - owner = "crow-translate"; - repo = pname; - rev = version; - sha256 = "sha256-AzwJJ85vxXsc0+W3QM8citN5f0AD6APQVd9628cfLgI="; - fetchSubmodules = true; + src = fetchzip { + url = "https://github.com/${pname}/${pname}/releases/download/${version}/${pname}-${version}-source.tar.gz"; + hash = "sha256-ZqiQVpKwGpglSc05Y1r6uScZyG4qnklPXqTGKxpS3f8="; }; patches = [ @@ -34,21 +31,26 @@ stdenv.mkDerivation rec { }) ]; - nativeBuildInputs = [ cmake extra-cmake-modules qttools wrapQtAppsHook ]; + nativeBuildInputs = [ + cmake + extra-cmake-modules + qttools + wrapQtAppsHook + ]; - buildInputs = [ leptonica tesseract4 qtmultimedia qtx11extras ]; + buildInputs = [ + kwayland + leptonica + tesseract4 + qtmultimedia + qtx11extras + ]; postInstall = '' substituteInPlace $out/share/applications/io.crow_translate.CrowTranslate.desktop \ --replace "Exec=qdbus" "Exec=${lib.getBin qttools}/bin/qdbus" ''; - passthru = { - updateScript = nix-update-script { - attrPath = pname; - }; - }; - meta = with lib; { description = "A simple and lightweight translator that allows to translate and speak text using Google, Yandex and Bing"; homepage = "https://crow-translate.github.io/"; diff --git a/pkgs/applications/misc/devdocs-desktop/default.nix b/pkgs/applications/misc/devdocs-desktop/default.nix index 85298bc3c75..97ed9ed7296 100644 --- a/pkgs/applications/misc/devdocs-desktop/default.nix +++ b/pkgs/applications/misc/devdocs-desktop/default.nix @@ -1,4 +1,4 @@ -{ lib, appimageTools, fetchurl, gsettings-desktop-schemas, gtk3 }: +{ lib, appimageTools, fetchurl }: let version = "0.7.2"; @@ -17,10 +17,6 @@ let in appimageTools.wrapType2 rec { inherit name src; - profile = '' - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS - ''; - extraInstallCommands = '' mv $out/bin/${name} $out/bin/${pname} install -m 444 -D ${appimageContents}/devdocs.desktop $out/share/applications/devdocs.desktop diff --git a/pkgs/applications/misc/goldendict/default.nix b/pkgs/applications/misc/goldendict/default.nix index f0eed5c1e2f..097dbe58ec5 100644 --- a/pkgs/applications/misc/goldendict/default.nix +++ b/pkgs/applications/misc/goldendict/default.nix @@ -10,13 +10,13 @@ mkDerivation rec { pname = "goldendict"; - version = "2021-03-09"; + version = "2022-05-10"; src = fetchFromGitHub { owner = "goldendict"; repo = pname; - rev = "b2e673961d28ca5eb920a909091252d3321f09d6"; - sha256 = "sha256-+AAamnICq0/B54ggFpgF/Uupm1a4YiEYgHXrhIK4M0E="; + rev = "f810c6bd724e61977b4e94ca2d8abfa5bd766379"; + sha256 = "sha256-gNM+iahoGQy8TlNFLQx5ksITzQznv7MWMX/88QCTnL0"; }; patches = [ @@ -27,7 +27,8 @@ mkDerivation rec { postPatch = '' substituteInPlace goldendict.pro \ - --replace "hunspell-1.6.1" "hunspell-${lib.versions.majorMinor hunspell.version}" + --replace "hunspell-1.6.1" "hunspell-${lib.versions.majorMinor hunspell.version}" \ + --replace "opencc.2" "opencc" ''; nativeBuildInputs = [ pkg-config qmake ]; diff --git a/pkgs/applications/misc/gpg-mdp/default.nix b/pkgs/applications/misc/gpg-mdp/default.nix index 48c7c7724eb..08ab2a5b7d9 100644 --- a/pkgs/applications/misc/gpg-mdp/default.nix +++ b/pkgs/applications/misc/gpg-mdp/default.nix @@ -1,4 +1,4 @@ -{ fetchurl, lib, stdenv, ncurses, gnupg }: +{ fetchurl, fetchpatch, lib, stdenv, ncurses, gnupg }: let version = "0.7.4"; in stdenv.mkDerivation { @@ -14,6 +14,15 @@ in stdenv.mkDerivation { url = "https://tamentis.com/projects/mdp/files/mdp-${version}.tar.gz"; sha256 = "04mdnx4ccpxf9m2myy9nvpl9ma4jgzmv9bkrzv2b9affzss3r34g"; }; + patches = [ + # Pull fix pending upstream inclusion for -fno-common toolchain support: + # https://github.com/tamentis/mdp/pull/9 + (fetchpatch { + name = "fno-common.patch"; + url = "https://github.com/tamentis/mdp/commit/95c77de3beb96dc7c76ff36d3f3dfb18411d7c54.patch"; + sha256 = "1j6yvjzkx31b758yav4arhlm5ig7phl8mgx4fcwj7lm2pfvzwcsz"; + }) + ]; buildInputs = [ ncurses ]; prePatch = '' substituteInPlace ./configure \ diff --git a/pkgs/applications/misc/hugo/default.nix b/pkgs/applications/misc/hugo/default.nix index 32144870cf1..3911cc6ab3c 100644 --- a/pkgs/applications/misc/hugo/default.nix +++ b/pkgs/applications/misc/hugo/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "hugo"; - version = "0.98.0"; + version = "0.99.1"; src = fetchFromGitHub { owner = "gohugoio"; repo = pname; rev = "v${version}"; - sha256 = "sha256-oZzjnuu6C522qBs/A83jKIZ3dUrJRmKJ/C8NRX31yvw="; + sha256 = "sha256-NFsXu4UxBmsSM6sNRSSoIUj6QjfB5iSXXbTNftakyHI="; }; - vendorSha256 = "sha256-HM5IE/rVNWyTfjUtVOlw+69+YoWYlLtU2FOXeH2BAi8="; + vendorSha256 = "sha256-A1ct8BjtKudNqfytCiaEGfgbRCMv45MIQxTka4ZFblg="; doCheck = false; diff --git a/pkgs/applications/misc/joplin-desktop/default.nix b/pkgs/applications/misc/joplin-desktop/default.nix index c842b7c4b36..ecb553dbd66 100644 --- a/pkgs/applications/misc/joplin-desktop/default.nix +++ b/pkgs/applications/misc/joplin-desktop/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, appimageTools, fetchurl, gsettings-desktop-schemas, gtk3, undmg }: +{ lib, stdenv, appimageTools, fetchurl, undmg }: let pname = "joplin-desktop"; @@ -45,7 +45,6 @@ let profile = '' export LC_ALL=C.UTF-8 - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS ''; multiPkgs = null; # no 32bit needed diff --git a/pkgs/applications/misc/keepassx/community.nix b/pkgs/applications/misc/keepassx/community.nix index c2e7ae58eb3..3daebeaabc9 100644 --- a/pkgs/applications/misc/keepassx/community.nix +++ b/pkgs/applications/misc/keepassx/community.nix @@ -5,34 +5,31 @@ , darwin , asciidoctor +, botan2 , curl -, glibcLocales , libXi , libXtst , libargon2 -, libgcrypt -, libgpg-error -, libsodium -, libyubikey +, libusb1 +, minizip +, pcsclite , pkg-config , qrencode , qtbase , qtmacextras , qtsvg , qtx11extras -, quazip , readline , wrapGAppsHook , wrapQtAppsHook -, yubikey-personalization , zlib , withKeePassBrowser ? true , withKeePassKeeShare ? true -, withKeePassKeeShareSecure ? true , withKeePassSSHAgent ? true , withKeePassNetworking ? true , withKeePassTouchID ? true +, withKeePassYubiKey ? true , withKeePassFDOSecrets ? true , nixosTests @@ -42,13 +39,13 @@ with lib; stdenv.mkDerivation rec { pname = "keepassxc"; - version = "2.6.6"; + version = "2.7.1"; src = fetchFromGitHub { owner = "keepassxreboot"; repo = "keepassxc"; rev = version; - sha256 = "15rm3avdmc2x2n92zq6w1zbcranak4j6dds2sxmgdqi1ffc0a3ci"; + sha256 = "sha256-BOtehDzlWhhfXj8TOFvFN4f86Hl2EC3rO4qUIl9fqq4="; }; NIX_CFLAGS_COMPILE = optionalString stdenv.cc.isClang [ @@ -66,15 +63,12 @@ stdenv.mkDerivation rec { cmakeFlags = [ "-DKEEPASSXC_BUILD_TYPE=Release" "-DWITH_GUI_TESTS=ON" - "-DWITH_XC_AUTOTYPE=ON" "-DWITH_XC_UPDATECHECK=OFF" - "-DWITH_XC_YUBIKEY=ON" ] ++ (optional withKeePassBrowser "-DWITH_XC_BROWSER=ON") ++ (optional withKeePassKeeShare "-DWITH_XC_KEESHARE=ON") - ++ (optional withKeePassKeeShareSecure "-DWITH_XC_KEESHARE_SECURE=ON") ++ (optional withKeePassNetworking "-DWITH_XC_NETWORKING=ON") - ++ (optional (withKeePassTouchID && stdenv.isDarwin) "-DWITH_XC_TOUCHID=ON") + ++ (optional (withKeePassYubiKey && stdenv.isLinux) "-DWITH_XC_YUBIKEY=ON") ++ (optional (withKeePassFDOSecrets && stdenv.isLinux) "-DWITH_XC_FDOSECRETS=ON") ++ (optional withKeePassSSHAgent "-DWITH_XC_SSHAGENT=ON"); @@ -95,26 +89,22 @@ stdenv.mkDerivation rec { buildInputs = [ curl - glibcLocales + botan2 libXi libXtst libargon2 - libgcrypt - libgpg-error - libsodium - libyubikey + minizip + pcsclite qrencode qtbase qtsvg qtx11extras readline - yubikey-personalization zlib ] - ++ optional withKeePassKeeShareSecure quazip + ++ optional stdenv.isLinux libusb1 ++ optional stdenv.isDarwin qtmacextras - ++ optional (stdenv.isDarwin && withKeePassTouchID) - darwin.apple_sdk.frameworks.LocalAuthentication; + ++ optional (stdenv.isDarwin && withKeePassTouchID) darwin.apple_sdk.frameworks.LocalAuthentication; passthru.tests = nixosTests.keepassxc; @@ -131,5 +121,6 @@ stdenv.mkDerivation rec { license = licenses.gpl2Plus; maintainers = with maintainers; [ jonafato turion ]; platforms = platforms.linux ++ platforms.darwin; + broken = stdenv.isDarwin; # see to https://github.com/NixOS/nixpkgs/issues/172165 }; } diff --git a/pkgs/applications/misc/keepassx/darwin.patch b/pkgs/applications/misc/keepassx/darwin.patch index 95ca5d4587f..1ec7db58636 100644 --- a/pkgs/applications/misc/keepassx/darwin.patch +++ b/pkgs/applications/misc/keepassx/darwin.patch @@ -8,46 +8,30 @@ index 74b1a7ff..0a713a32 100644 elseif(APPLE AND WITH_APP_BUNDLE) + set(CMAKE_INSTALL_PREFIX "${CMAKE_INSTALL_PREFIX}/Applications") set(BUNDLE_INSTALL_DIR "${PROGNAME}.app/Contents") - set(CMAKE_INSTALL_MANDIR "${PROGNAME}.app/Contents/Resources/man") - set(CLI_INSTALL_DIR "${PROGNAME}.app/Contents/MacOS") -@@ -369,12 +370,6 @@ set(CMAKE_AUTORCC ON) + set(CMAKE_INSTALL_MANDIR "${BUNDLE_INSTALL_DIR}/Resources/man") + set(CLI_INSTALL_DIR "${BUNDLE_INSTALL_DIR}/MacOS") +@@ -470,11 +470,6 @@ set(CMAKE_AUTORCC ON) if(APPLE) set(CMAKE_MACOSX_RPATH TRUE) -- find_program(MACDEPLOYQT_EXE macdeployqt HINTS ${Qt5_PREFIX}/bin ENV PATH) +- find_program(MACDEPLOYQT_EXE macdeployqt HINTS ${Qt5_PREFIX}/bin ${Qt5_PREFIX}/tools/qt5/bin ENV PATH) - if(NOT MACDEPLOYQT_EXE) - message(FATAL_ERROR "macdeployqt is required to build on macOS") -- else() -- message(STATUS "Using macdeployqt: ${MACDEPLOYQT_EXE}") - endif() - elseif(MINGW) - find_program(WINDEPLOYQT_EXE windeployqt HINTS ${Qt5_PREFIX}/bin ENV PATH) - if(NOT WINDEPLOYQT_EXE) -diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt -index f142f368..0742512d 100644 ---- a/src/CMakeLists.txt -+++ b/src/CMakeLists.txt -@@ -351,11 +351,6 @@ if(APPLE AND WITH_APP_BUNDLE) - set(CPACK_PACKAGE_FILE_NAME "${PROGNAME}-${KEEPASSXC_VERSION}") - include(CPack) +- message(STATUS "Using macdeployqt: ${MACDEPLOYQT_EXE}") + set(MACDEPLOYQT_EXTRA_BINARIES "") + elseif(WIN32) + find_program(WINDEPLOYQT_EXE windeployqt HINTS ${Qt5_PREFIX}/bin ${Qt5_PREFIX}/tools/qt5/bin ENV PATH) +diff --git a/src/post_install/CMakeLists.txt b/src/post_install/CMakeLists.txt +index 359c891f..a6a061a3 100644 +--- a/src/post_install/CMakeLists.txt ++++ b/src/post_install/CMakeLists.txt +@@ -1,7 +1,7 @@ + # The install commands in this subdirectory will be executed after all the install commands in the + # current scope are ran. It is required for correct functtioning of macdeployqt. -- add_custom_command(TARGET ${PROGNAME} -- POST_BUILD -- COMMAND ${MACDEPLOYQT_EXE} ${PROGNAME}.app -- WORKING_DIRECTORY ${CMAKE_BINARY_DIR}/src -- COMMENT "Deploying app bundle") - endif() - - install(TARGETS ${PROGNAME} -diff --git a/src/autotype/mac/CMakeLists.txt b/src/autotype/mac/CMakeLists.txt -index 7427450a..a0a58d71 100644 ---- a/src/autotype/mac/CMakeLists.txt -+++ b/src/autotype/mac/CMakeLists.txt -@@ -8,7 +8,6 @@ if(WITH_APP_BUNDLE) - add_custom_command(TARGET keepassx-autotype-cocoa - POST_BUILD - COMMAND ${CMAKE_COMMAND} -E copy ${CMAKE_CURRENT_BINARY_DIR}/libkeepassx-autotype-cocoa.so ${PLUGIN_INSTALL_DIR} -- COMMAND ${MACDEPLOYQT_EXE} ${PROGNAME}.app -executable=${PLUGIN_INSTALL_DIR}/libkeepassx-autotype-cocoa.so -no-plugins - WORKING_DIRECTORY ${CMAKE_BINARY_DIR}/src - COMMENT "Deploying autotype plugin") - else() +-if(APPLE AND WITH_APP_BUNDLE) ++if(FALSE) + # Run macdeloyqt on the main app and any extra binaries and plugins as specified by the + # _MACDEPLOYQT_EXTRA_BINARIES global property. + # All install(TARGETS) calls should have already been called. diff --git a/pkgs/applications/misc/logseq/default.nix b/pkgs/applications/misc/logseq/default.nix index 1fdf48ac1a0..d0b02caff04 100644 --- a/pkgs/applications/misc/logseq/default.nix +++ b/pkgs/applications/misc/logseq/default.nix @@ -1,12 +1,12 @@ -{ lib, stdenv, fetchurl, appimageTools, makeWrapper, autoPatchelfHook, electron, curl, expat, gcc, openssl, zlib }: +{ lib, stdenv, fetchurl, appimageTools, makeWrapper, autoPatchelfHook, electron, git, curl, expat, gcc, openssl, zlib }: stdenv.mkDerivation rec { pname = "logseq"; - version = "0.6.6"; + version = "0.6.9"; src = fetchurl { url = "https://github.com/logseq/logseq/releases/download/${version}/logseq-linux-x64-${version}.AppImage"; - sha256 = "r6IBvhA8H8XnMIBgZZodyU61xtqNA4N9kCRv/QWQc9M="; + sha256 = "sha256-ubhGDx5T1AAJjU6Ka1Pqy5kL8HPa097QhhK5Sp3HWEo="; name = "${pname}-${version}.AppImage"; }; @@ -38,6 +38,7 @@ stdenv.mkDerivation rec { postFixup = '' makeWrapper ${electron}/bin/electron $out/bin/${pname} \ + --prefix PATH : ${lib.makeBinPath [ git ]} \ --add-flags $out/share/${pname}/resources/app ''; diff --git a/pkgs/applications/misc/marktext/default.nix b/pkgs/applications/misc/marktext/default.nix index fc83e543dcf..a99332ae82f 100644 --- a/pkgs/applications/misc/marktext/default.nix +++ b/pkgs/applications/misc/marktext/default.nix @@ -1,4 +1,4 @@ -{ appimageTools, fetchurl, lib, gsettings-desktop-schemas, gtk3 }: +{ appimageTools, fetchurl, lib }: let pname = "marktext"; @@ -18,12 +18,6 @@ appimageTools.wrapType2 rec { profile = '' export LC_ALL=C.UTF-8 - '' - # Fixes file open dialog error - # GLib-GIO-ERROR **: 20:36:48.243: No GSettings schemas are installed on the system - # See https://github.com/NixOS/nixpkgs/pull/83701#issuecomment-608034097 - + '' - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS ''; multiPkgs = null; # no 32bit needed diff --git a/pkgs/applications/misc/metadata-cleaner/default.nix b/pkgs/applications/misc/metadata-cleaner/default.nix index ee7703987ea..637c4add65d 100644 --- a/pkgs/applications/misc/metadata-cleaner/default.nix +++ b/pkgs/applications/misc/metadata-cleaner/default.nix @@ -13,7 +13,7 @@ , ninja , pkg-config , poppler_gi -, wrapGAppsHook +, wrapGAppsHook4 }: python3.pkgs.buildPythonApplication rec { @@ -38,7 +38,7 @@ python3.pkgs.buildPythonApplication rec { meson ninja pkg-config - wrapGAppsHook + wrapGAppsHook4 ]; buildInputs = [ diff --git a/pkgs/applications/misc/mkgmap/default.nix b/pkgs/applications/misc/mkgmap/default.nix index 976c3c7978a..89a64457fd5 100644 --- a/pkgs/applications/misc/mkgmap/default.nix +++ b/pkgs/applications/misc/mkgmap/default.nix @@ -1,5 +1,6 @@ { lib, stdenv , fetchurl +, fetchsvn , substituteAll , jdk , jre @@ -14,11 +15,12 @@ let in stdenv.mkDerivation rec { pname = "mkgmap"; - version = "4897"; + version = "4902"; - src = fetchurl { - url = "https://www.mkgmap.org.uk/download/mkgmap-r${version}-src.tar.gz"; - sha256 = "RR8o8stOnL6nnEkCtRT9tgo8foSxd6ASTsRcGDgbQRk="; + src = fetchsvn { + url = "https://svn.mkgmap.org.uk/mkgmap/mkgmap/trunk"; + rev = version; + sha256 = "sha256-djqa6loaFUYfAhgmF6Lm+4M4Xgzyiw1bXqK4XWqT/tY="; }; patches = [ diff --git a/pkgs/applications/misc/mkgmap/splitter/default.nix b/pkgs/applications/misc/mkgmap/splitter/default.nix index 97f74becede..9956b61c9cf 100644 --- a/pkgs/applications/misc/mkgmap/splitter/default.nix +++ b/pkgs/applications/misc/mkgmap/splitter/default.nix @@ -1,5 +1,6 @@ { lib, stdenv , fetchurl +, fetchsvn , substituteAll , jdk , jre @@ -13,11 +14,12 @@ let in stdenv.mkDerivation rec { pname = "splitter"; - version = "647"; + version = "651"; - src = fetchurl { - url = "https://www.mkgmap.org.uk/download/splitter-r${version}-src.tar.gz"; - sha256 = "j9TJ+9WuItueztWjYoD9s9x8wfsga2QCIY5X2+s3Z1c="; + src = fetchsvn { + url = "https://svn.mkgmap.org.uk/mkgmap/splitter/trunk"; + rev = version; + sha256 = "sha256-j6U+Wvxef151NEwkpuv4VdMac/cOT9YZUgkt+YPGCuk="; }; patches = [ diff --git a/pkgs/applications/misc/mob/default.nix b/pkgs/applications/misc/mob/default.nix index e83ed045b0d..d02bd85a7be 100644 --- a/pkgs/applications/misc/mob/default.nix +++ b/pkgs/applications/misc/mob/default.nix @@ -1,5 +1,5 @@ { lib -, buildGoPackage +, buildGoModule , fetchFromGitHub , stdenv , withSpeech ? !stdenv.isDarwin @@ -7,22 +7,26 @@ , espeak-ng }: -buildGoPackage rec { +buildGoModule rec { pname = "mob"; - version = "3.0.0"; + version = "3.1.3"; src = fetchFromGitHub { - rev = "v${version}"; owner = "remotemobprogramming"; repo = pname; - sha256 = "sha256-silAgScvhl388Uf6HkWqEkNmr/K6aUt/lj/rxzkk/f0="; + rev = "v${version}"; + sha256 = "sha256-FOZrwOf3IFnwtqAk0RNwvlTUidqWbo1aopSu6SmmV4k="; }; + vendorSha256 = "sha256-pQpattmS9VmO3ZIQUFn66az8GSmB4IvYhTTCFn6SUmo="; + nativeBuildInputs = [ makeWrapper ]; - goPackagePath = "github.com/remotemobprogramming/mob"; + ldflags = [ "-s" "-w" ]; + + doCheck = false; preFixup = lib.optionalString withSpeech '' wrapProgram $out/bin/mob \ @@ -34,6 +38,5 @@ buildGoPackage rec { homepage = "https://github.com/remotemobprogramming/mob"; license = licenses.mit; maintainers = with maintainers; [ ericdallo ]; - platforms = platforms.linux ++ platforms.darwin; }; } diff --git a/pkgs/applications/misc/notable/default.nix b/pkgs/applications/misc/notable/default.nix index 923f5fb4528..9e701cdb33f 100644 --- a/pkgs/applications/misc/notable/default.nix +++ b/pkgs/applications/misc/notable/default.nix @@ -1,4 +1,4 @@ -{ appimageTools, fetchurl, lib, gsettings-desktop-schemas, gtk3 }: +{ appimageTools, fetchurl, lib }: let pname = "notable"; @@ -23,7 +23,6 @@ appimageTools.wrapType2 rec { profile = '' export LC_ALL=C.UTF-8 - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS ''; multiPkgs = null; # no 32bit needed diff --git a/pkgs/applications/misc/octoprint/default.nix b/pkgs/applications/misc/octoprint/default.nix index dbdc15cb9c7..41841c58795 100644 --- a/pkgs/applications/misc/octoprint/default.nix +++ b/pkgs/applications/misc/octoprint/default.nix @@ -74,13 +74,13 @@ let self: super: { octoprint = self.buildPythonPackage rec { pname = "OctoPrint"; - version = "1.8.0rc5"; + version = "1.8.0"; src = fetchFromGitHub { owner = "OctoPrint"; repo = "OctoPrint"; rev = version; - sha256 = "sha256-FeT45w6VXaFV4BsuOMk58nxxiu9jhCNnA2F7Uh/3sB0="; + sha256 = "sha256-GDKXHLigMAork+KAFOs8znNhaTYVTWVB2Tb+4sAqF8o="; }; propagatedBuildInputs = with super; [ diff --git a/pkgs/applications/misc/p2pool/default.nix b/pkgs/applications/misc/p2pool/default.nix index cb0b53e887b..9d432556b9e 100644 --- a/pkgs/applications/misc/p2pool/default.nix +++ b/pkgs/applications/misc/p2pool/default.nix @@ -14,13 +14,13 @@ stdenv.mkDerivation rec { pname = "p2pool"; - version = "1.9"; + version = "2.0"; src = fetchFromGitHub { owner = "SChernykh"; repo = "p2pool"; rev = "v${version}"; - sha256 = "sha256-nqJ0F99QjrpwXHRPxZ7kLCYA9VJWGH2ahcr/MBQrhyY="; + sha256 = "sha256-lJJZ0ZsPTPEaYyzi8chAPo1OlZQ6p9QVqwtSOyJD7W4="; fetchSubmodules = true; }; diff --git a/pkgs/applications/misc/plover/default.nix b/pkgs/applications/misc/plover/default.nix index 8f4bf10b100..5a8055b0815 100644 --- a/pkgs/applications/misc/plover/default.nix +++ b/pkgs/applications/misc/plover/default.nix @@ -48,7 +48,7 @@ postPatch = "sed -i /PyQt5/d setup.cfg"; checkInputs = [ pytest mock ]; - propagatedBuildInputs = [ Babel pyqt5 xlib pyserial appdirs wcwidth setuptools ]; + propagatedBuildInputs = [ babel pyqt5 xlib pyserial appdirs wcwidth setuptools ]; dontWrapQtApps = true; diff --git a/pkgs/applications/misc/privacyidea/default.nix b/pkgs/applications/misc/privacyidea/default.nix index 225dfb93637..d8936428079 100644 --- a/pkgs/applications/misc/privacyidea/default.nix +++ b/pkgs/applications/misc/privacyidea/default.nix @@ -11,6 +11,11 @@ let inherit version; hash = "sha256-67t3fL+TEjWbiXv4G6ANrg9ctp+6KhgmXcwYpvXvdRk="; }; + doCheck = false; + }); + # fails with `no tests ran in 1.75s` + alembic = super.alembic.overridePythonAttrs (lib.const { + doCheck = false; }); flask_migrate = super.flask_migrate.overridePythonAttrs (oldAttrs: rec { version = "2.7.0"; @@ -20,33 +25,70 @@ let sha256 = "ae2f05671588762dd83a21d8b18c51fe355e86783e24594995ff8d7380dffe38"; }; }); - werkzeug = self.callPackage ../../../development/python2-modules/werkzeug { }; - flask = self.callPackage ../../../development/python2-modules/flask { }; - sqlsoup = super.sqlsoup.overrideAttrs ({ meta ? {}, ... }: { - meta = meta // { broken = false; }; + # Taken from by https://github.com/NixOS/nixpkgs/pull/173090/commits/d2c0c7eb4cc91beb0a1adbaf13abc0a526a21708 + werkzeug = super.werkzeug.overridePythonAttrs (old: rec { + version = "1.0.1"; + src = old.src.override { + inherit version; + sha256 = "6c80b1e5ad3665290ea39320b91e1be1e0d5f60652b964a3070216de83d2e47c"; + }; + checkInputs = old.checkInputs ++ (with self; [ + requests + ]); + disabledTests = old.disabledTests ++ [ + # ResourceWarning: unclosed file + "test_basic" + "test_date_to_unix" + "test_easteregg" + "test_file_rfc2231_filename_continuations" + "test_find_terminator" + "test_save_to_pathlib_dst" + ]; + disabledTestPaths = old.disabledTestPaths ++ [ + # ResourceWarning: unclosed file + "tests/test_http.py" + ]; }); - pyjwt = super.pyjwt.overridePythonAttrs (oldAttrs: rec { - version = "1.7.1"; - src = python3.pkgs.fetchPypi { - pname = "PyJWT"; + # Required by flask-1.1 + jinja2 = super.jinja2.overridePythonAttrs (old: rec { + version = "2.11.3"; + src = old.src.override { inherit version; - sha256 = "sha256-jVmpdvt3Pz5qOchWNjV8Tw4kJwc5TK2t2YFPXLqiDpY="; + sha256 = "sha256-ptWEM94K6AA0fKsfowQ867q+i6qdKeZo8cdoy4ejM8Y="; }; - # requires different testing dependencies, and privacyIDEA will test this as well - doCheck = false; + }); + # Required by jinja2-2.11.3 + markupsafe = super.markupsafe.overridePythonAttrs (old: rec { + version = "2.0.1"; + src = old.src.override { + inherit version; + sha256 = "sha256-WUxngH+xYjizDES99082wCzfItHIzake+KDtjav1Ygo="; + }; + }); + # Required by flask-babel + itsdangerous = super.itsdangerous.overridePythonAttrs (old: rec { + version = "2.0.1"; + src = old.src.override { + inherit version; + sha256 = "sha256-nnJNaPwikCoUNTUfhMP7hiPzA//8xWaky5Ut+MVyz/A="; + }; + }); + flask = self.callPackage ../../../development/python2-modules/flask { }; + sqlsoup = super.sqlsoup.overrideAttrs ({ meta ? {}, ... }: { + meta = meta // { broken = false; }; }); }; }; in python3'.pkgs.buildPythonPackage rec { pname = "privacyIDEA"; - version = "3.6.3"; + version = "3.7.1"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "sha256-SsOEmbyEAKU3pdzsyqi5SwDgJMGEAzyCywoio9iFQAA="; + sha256 = "sha256-c5pWbBaOFQd7z3BvtYgrnZBiknLBDCE6So76Q68AptA="; fetchSubmodules = true; }; @@ -55,7 +97,7 @@ python3'.pkgs.buildPythonPackage rec { defusedxml croniter flask_migrate pyjwt configobj sqlsoup pillow python-gnupg passlib pyopenssl beautifulsoup4 smpplib flask-babel ldap3 huey pyyaml qrcode oauth2client requests lxml cbor2 psycopg2 - pydash ecdsa google-auth importlib-metadata + pydash ecdsa google-auth importlib-metadata argon2-cffi bcrypt ]; passthru.tests = { inherit (nixosTests) privacyidea; }; diff --git a/pkgs/applications/misc/safeeyes/default.nix b/pkgs/applications/misc/safeeyes/default.nix index c188e5f7853..4a063eb8edd 100644 --- a/pkgs/applications/misc/safeeyes/default.nix +++ b/pkgs/applications/misc/safeeyes/default.nix @@ -25,7 +25,7 @@ in buildPythonApplication rec { ]; propagatedBuildInputs = with python3Packages; [ - Babel + babel psutil xlib pygobject3 diff --git a/pkgs/applications/misc/system76-keyboard-configurator/default.nix b/pkgs/applications/misc/system76-keyboard-configurator/default.nix new file mode 100644 index 00000000000..2708fb04a61 --- /dev/null +++ b/pkgs/applications/misc/system76-keyboard-configurator/default.nix @@ -0,0 +1,40 @@ +{ lib, stdenv, fetchFromGitHub, rustPlatform, gtk3, glib, wrapGAppsHook, libusb1, hidapi, udev, pkgconfig }: + +# system76-keyboard-configurator tries to spawn a daemon as root via pkexec, so +# your system needs a PolicyKit authentication agent running for the +# configurator to work. + +rustPlatform.buildRustPackage rec { + pname = "system76-keyboard-configurator"; + version = "1.0.0"; + + src = fetchFromGitHub { + owner = "pop-os"; + repo = "keyboard-configurator"; + rev = "v${version}"; + sha256 = "sha256-CVCXNPmc/0T8vkxfU+i1nSbfusZGFVkLEveSoCePK0M="; + }; + + nativeBuildInputs = [ + pkgconfig + glib # for glib-compile-resources + wrapGAppsHook + ]; + + buildInputs = [ + gtk3 + hidapi + libusb1 + udev + ]; + + cargoSha256 = "sha256-/p2cVxOvWKkcVOYIR0N8tQSCniw+QhXhC+pus4NsQ8k="; + + meta = with lib; { + description = "Keyboard configuration application for System76 keyboards and laptops"; + homepage = "https://github.com/pop-os/keyboard-configurator"; + license = with licenses; [ gpl3Only ]; + maintainers = with maintainers; [ mirrexagon ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/misc/tilemaker/default.nix b/pkgs/applications/misc/tilemaker/default.nix new file mode 100644 index 00000000000..cc87c529e34 --- /dev/null +++ b/pkgs/applications/misc/tilemaker/default.nix @@ -0,0 +1,40 @@ +{ lib, stdenv, fetchFromGitHub, buildPackages, cmake, installShellFiles +, boost, lua, protobuf, rapidjson, shapelib, sqlite, zlib }: + +stdenv.mkDerivation rec { + pname = "tilemaker"; + version = "2.2.0"; + + src = fetchFromGitHub { + owner = "systemed"; + repo = pname; + rev = "v${version}"; + hash = "sha256-st6WDCk1RZ2lbfrudtcD+zenntyTMRHrIXw3nX5FHOU="; + }; + + postPatch = '' + substituteInPlace src/tilemaker.cpp \ + --replace "config.json" "$out/share/tilemaker/config-openmaptiles.json" \ + --replace "process.lua" "$out/share/tilemaker/process-openmaptiles.lua" + ''; + + nativeBuildInputs = [ cmake installShellFiles ]; + + buildInputs = [ boost lua protobuf rapidjson shapelib sqlite zlib ]; + + cmakeFlags = lib.optional (stdenv.hostPlatform != stdenv.buildPlatform) + "-DPROTOBUF_PROTOC_EXECUTABLE=${buildPackages.protobuf}/bin/protoc"; + + postInstall = '' + installManPage ../docs/man/tilemaker.1 + install -Dm644 ../resources/* -t $out/share/tilemaker + ''; + + meta = with lib; { + description = "Make OpenStreetMap vector tiles without the stack"; + homepage = "https://tilemaker.org/"; + license = licenses.free; # FTWPL + maintainers = with maintainers; [ sikmir ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/applications/misc/tpmmanager/default.nix b/pkgs/applications/misc/tpmmanager/default.nix index a94363f4600..4523168314a 100644 --- a/pkgs/applications/misc/tpmmanager/default.nix +++ b/pkgs/applications/misc/tpmmanager/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, qt4, qmake4Hook, trousers }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, qtbase, qmake, wrapQtAppsHook, trousers }: stdenv.mkDerivation rec { version = "0.8.1"; @@ -8,12 +8,24 @@ stdenv.mkDerivation rec { owner = "Rohde-Schwarz"; repo = "TPMManager"; rev = "v${version}"; - sha256 = "sha256-JKYG+I/tZ+0NDmHcIgKV6eGrjbPvPQKPo0sE/zBlLY4="; + sha256 = "sha256-UZYn4ssbvLpdB0DssT7MXqQZCu1KkLf/Bsb45Rvgm+E="; }; - nativeBuildInputs = [ qmake4Hook ]; + patches = [ + # build with Qt5 + (fetchpatch { + url = "https://github.com/Rohde-Schwarz/TPMManager/commit/f62c0f2de2097af9b504c80d6193818e6e4ca84f.patch"; + sha256 = "sha256-gMhDNN2UkX2lJf/oJEzOkCvF6+EGdIj9xwtXb1rCeys="; + }) + (fetchpatch { + url = "https://github.com/Rohde-Schwarz/TPMManager/commit/c287a841ac6b057ed35799949211866b9f533561.patch"; + sha256 = "sha256-2ZyUml8Q9bKQLVZWr18AzLt8VYLICXH9VDeq6B5Xfto="; + }) + ]; - buildInputs = [ qt4 trousers ]; + nativeBuildInputs = [ qmake wrapQtAppsHook ]; + + buildInputs = [ qtbase trousers ]; installPhase = '' mkdir -p $out/bin diff --git a/pkgs/applications/misc/uni/default.nix b/pkgs/applications/misc/uni/default.nix new file mode 100644 index 00000000000..61ea6578787 --- /dev/null +++ b/pkgs/applications/misc/uni/default.nix @@ -0,0 +1,24 @@ +{ lib, buildGoModule, fetchFromGitHub }: + +buildGoModule rec { + pname = "uni"; + version = "2.5.1"; + + src = fetchFromGitHub { + owner = "arp242"; + repo = "uni"; + rev = "v${version}"; + sha256 = "kWiglMuJdcD7z2MDfz1MbItB8r9BJ7LUqfPfJa8QkLA="; + }; + + vendorSha256 = "6HNFCUSJA6oduCx/SCUQQeCHGS7ohaWRunixdwMurBw="; + + ldflags = [ "-s" "-w" "-X main.version=${version}" ]; + + meta = with lib; { + homepage = "https://github.com/arp242/uni"; + description = "Query the Unicode database from the commandline, with good support for emojis"; + license = licenses.mit; + maintainers = with maintainers; [ chvp ]; + }; +} diff --git a/pkgs/applications/misc/variety/default.nix b/pkgs/applications/misc/variety/default.nix index 3d5b99eb171..40a6366f87c 100644 --- a/pkgs/applications/misc/variety/default.nix +++ b/pkgs/applications/misc/variety/default.nix @@ -17,13 +17,13 @@ python3.pkgs.buildPythonApplication rec { pname = "variety"; - version = "0.8.5"; + version = "0.8.7"; src = fetchFromGitHub { owner = "varietywalls"; repo = "variety"; rev = version; - sha256 = "sha256-6dLz4KXavXwnk5GizBH46d2EHMHPjRo0WnnUuVMtI1M="; + hash = "sha256-OFQiZe8G5v4F8HUJPeEM3ggVWHaALT1txy/aymHZ+jc="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/misc/xsuspender/default.nix b/pkgs/applications/misc/xsuspender/default.nix index c09c9329aab..d6790759bab 100644 --- a/pkgs/applications/misc/xsuspender/default.nix +++ b/pkgs/applications/misc/xsuspender/default.nix @@ -5,13 +5,13 @@ with lib; stdenv.mkDerivation rec { pname = "xsuspender"; - version = "1.1"; + version = "1.3"; src = fetchFromGitHub { owner = "kernc"; repo = "xsuspender"; rev = version; - sha256 = "03lbga68dxg89d227sdwk1f5xj4r1pmj0qh2kasi2cqh8ll7qv4b"; + sha256 = "1c6ab1s9bbkjbmcfv2mny273r66dlz7sgxsmzfwi0fm2vcb2lwim"; }; outputs = [ "out" "man" "doc" ]; diff --git a/pkgs/applications/misc/yubioath-desktop/default.nix b/pkgs/applications/misc/yubioath-desktop/default.nix index 3d35e3658e5..8a164523908 100644 --- a/pkgs/applications/misc/yubioath-desktop/default.nix +++ b/pkgs/applications/misc/yubioath-desktop/default.nix @@ -1,27 +1,38 @@ -{ lib, stdenv, fetchurl, mkDerivation -, qmake, qtbase, qtquickcontrols2, qtgraphicaleffects -, python3, pyotherside -, pcsclite, yubikey-personalization -, yubikey-manager, makeWrapper }: +{ lib +, stdenv +, fetchurl +, mkDerivation +, qmake +, qtbase +, qtquickcontrols2 +, qtgraphicaleffects +, qtmultimedia +, python3 +, pyotherside +, pcsclite +, yubikey-personalization +, yubikey-manager +, makeWrapper +}: mkDerivation rec { pname = "yubioath-desktop"; - version = "5.0.5"; + version = "5.1.0"; src = fetchurl { url = "https://developers.yubico.com/yubioath-desktop/Releases/yubioath-desktop-${version}.tar.gz"; - sha256 = "05xs6xh9pi50h0668arirj0gnz11adpixgsdkds072077gasdm0g"; + hash = "sha256-Lm9F4eaG9T5brAV7XDAkoj0WClmXEYIhuUzh2rk0oc0="; }; doCheck = false; - buildInputs = [ qtbase qtquickcontrols2 qtgraphicaleffects python3 ]; + buildInputs = [ qtbase qtquickcontrols2 qtgraphicaleffects qtmultimedia python3 ]; nativeBuildInputs = [ qmake makeWrapper python3.pkgs.wrapPython ]; postPatch = '' - substituteInPlace deployment.pri \ - --replace '/usr/bin' "$out/bin" + substituteInPlace QZXing/QZXing-components.pri \ + --replace 'target.path = $$PREFIX/lib' 'target.path = $$PREFIX/bin' ''; pythonPath = [ yubikey-manager ]; diff --git a/pkgs/applications/misc/zettlr/default.nix b/pkgs/applications/misc/zettlr/default.nix index d80c8d03bf4..bd9e5a87bf9 100644 --- a/pkgs/applications/misc/zettlr/default.nix +++ b/pkgs/applications/misc/zettlr/default.nix @@ -1,8 +1,6 @@ { appimageTools , lib , fetchurl -, gtk3 -, gsettings-desktop-schemas , texlive , pandoc }: @@ -10,11 +8,11 @@ # Based on https://gist.github.com/msteen/96cb7df66a359b827497c5269ccbbf94 and joplin-desktop nixpkgs. let pname = "zettlr"; - version = "2.2.5"; + version = "2.2.6"; name = "${pname}-${version}"; src = fetchurl { url = "https://github.com/Zettlr/Zettlr/releases/download/v${version}/Zettlr-${version}-x86_64.appimage"; - sha256 = "sha256-KP3lt0CweT1f/BR3IpnjwCqNvhFbrpz9KLg6K8OMs+I="; + sha256 = "sha256-f01WLxp8fe7y2EwTUhpPqcRuWBs/9lMaAAOdybmHB5M="; }; appimageContents = appimageTools.extractType2 { inherit name src; @@ -23,10 +21,6 @@ in appimageTools.wrapType2 rec { inherit name src; - profile = '' - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS - ''; - multiPkgs = null; # no 32bit needed extraPkgs = pkgs: (appimageTools.defaultFhsEnvArgs.multiPkgs pkgs) ++ [ texlive pandoc ]; extraInstallCommands = '' diff --git a/pkgs/applications/networking/Sylk/default.nix b/pkgs/applications/networking/Sylk/default.nix index c514ec22f11..18e36cb7028 100644 --- a/pkgs/applications/networking/Sylk/default.nix +++ b/pkgs/applications/networking/Sylk/default.nix @@ -1,4 +1,4 @@ -{ appimageTools, fetchurl, lib, gsettings-desktop-schemas, gtk3 }: +{ appimageTools, fetchurl, lib }: let pname = "Sylk"; @@ -15,7 +15,6 @@ appimageTools.wrapType2 rec { profile = '' export LC_ALL=C.UTF-8 - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS ''; multiPkgs = null; # no 32bit needed diff --git a/pkgs/applications/networking/browsers/chromium/common.nix b/pkgs/applications/networking/browsers/chromium/common.nix index 3b22761cbc0..993f95a6bff 100644 --- a/pkgs/applications/networking/browsers/chromium/common.nix +++ b/pkgs/applications/networking/browsers/chromium/common.nix @@ -160,6 +160,10 @@ let ./patches/no-build-timestamps.patch # For bundling Widevine (DRM), might be replaceable via bundle_widevine_cdm=true in gnFlags: ./patches/widevine-79.patch + ] ++ optionals (versionRange "102" "103") [ + # https://dawn-review.googlesource.com/c/dawn/+/88582 + # Wrap get_gitHash in try-catch to prevent failures in tarball builds. + ./patches/m102-fix-dawn_version_generator-failure.patch ]; postPatch = optionalString (chromiumVersionAtLeast "102") '' diff --git a/pkgs/applications/networking/browsers/chromium/patches/m102-fix-dawn_version_generator-failure.patch b/pkgs/applications/networking/browsers/chromium/patches/m102-fix-dawn_version_generator-failure.patch new file mode 100644 index 00000000000..e9391541e43 --- /dev/null +++ b/pkgs/applications/networking/browsers/chromium/patches/m102-fix-dawn_version_generator-failure.patch @@ -0,0 +1,43 @@ +From e9ffd084ec1ff9f7bfc86879732953dc58256958 Mon Sep 17 00:00:00 2001 +From: Loko Kung <lokokung@google.com> +Date: Tue, 3 May 2022 00:28:53 +0000 +Subject: [PATCH] Wrap get_gitHash in try-catch to prevent failures in tarball + builds. + +Bug: chromium:1321370 +Change-Id: If39d2236d1b4d965f7bd189f6bd1cdc70436c41d +Reviewed-on: https://dawn-review.googlesource.com/c/dawn/+/88582 +Commit-Queue: Loko Kung <lokokung@google.com> +Reviewed-by: Austin Eng <enga@chromium.org> +Kokoro: Kokoro <noreply+kokoro@google.com> +(cherry picked from commit 03ddfbb81fb4127ca37ea53e70fcb34fe851e24e) +--- + third_party/dawn/generator/dawn_version_generator.py | 13 ++++++++----- + 1 file changed, 8 insertions(+), 5 deletions(-) + +diff --git a/third_party/dawn/generator/dawn_version_generator.py b/third_party/dawn/generator/dawn_version_generator.py +index 1907e88da..3c1927bee 100644 +--- a/third_party/dawn/generator/dawn_version_generator.py ++++ b/third_party/dawn/generator/dawn_version_generator.py +@@ -23,11 +23,14 @@ def get_git(): + + + def get_gitHash(dawnDir): +- result = subprocess.run([get_git(), 'rev-parse', 'HEAD'], +- stdout=subprocess.PIPE, +- cwd=dawnDir) +- if result.returncode == 0: +- return result.stdout.decode('utf-8').strip() ++ try: ++ result = subprocess.run([get_git(), "rev-parse", "HEAD"], ++ stdout=subprocess.PIPE, ++ cwd=dawnDir) ++ if result.returncode == 0: ++ return result.stdout.decode("utf-8").strip() ++ except Exception: ++ return "" + # No hash was available (possibly) because the directory was not a git checkout. Dawn should + # explicitly handle its absenece and disable features relying on the hash, i.e. caching. + return '' +-- +2.36.0 diff --git a/pkgs/applications/networking/browsers/chromium/upstream-info.json b/pkgs/applications/networking/browsers/chromium/upstream-info.json index 8f2bdf61e56..031439f75d2 100644 --- a/pkgs/applications/networking/browsers/chromium/upstream-info.json +++ b/pkgs/applications/networking/browsers/chromium/upstream-info.json @@ -19,9 +19,9 @@ } }, "beta": { - "version": "102.0.5005.40", - "sha256": "1max5ndvl59j2hlv9k88dmadr4q05q1clzlc6zba0gcbvqx5q9jb", - "sha256bin64": "1byqx9w0hqwk3vizdas3dylbm69108bnq4xlm0mp1p1gh37h1642", + "version": "102.0.5005.49", + "sha256": "16r9mrsagy8lspr4pcrzfpw0vw0ym9m7n41a9yipjhm2arlhw5b2", + "sha256bin64": "0lyk6rd9c1gyvxsmq1bl7asr7carzyaan306ddvwxsy5rfh53jxa", "deps": { "gn": { "version": "2022-04-14", @@ -32,15 +32,15 @@ } }, "dev": { - "version": "103.0.5042.0", - "sha256": "0wm8m1mff8gb0x7whif16gvmhibgc8ndygnawkwq3g4fvninb65h", - "sha256bin64": "0vzmpi36a86kgxhdxvbqbn7i1wf2annar1mi15gra1cjpz3lf9kh", + "version": "103.0.5056.0", + "sha256": "1mvi7yc38cxn39wqm8ybrn862gaw293rb6lwcszc6rmzwd9jmd29", + "sha256bin64": "06371adaz8llzfjykc72vjvpy3xrgvqzz9kdrr82jdx1pjdbv29d", "deps": { "gn": { - "version": "2022-05-02", + "version": "2022-05-09", "url": "https://gn.googlesource.com/gn", - "rev": "53ef169800760fdc09f0773bf380fe99eaeab339", - "sha256": "08i7qc4qvf8gb3vryajvww75wk653fybf1bb2k40r8i07znhy78r" + "rev": "bf4e17dc67b2a2007475415e3f9e1d1cf32f6e35", + "sha256": "0d2lb4alsx32zsdw3jxpxbzal350mim237p2y984h4r6fd1ddzyi" } } }, diff --git a/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix b/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix index ab3cfb9ef52..a779e99c254 100644 --- a/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix +++ b/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix @@ -1,985 +1,985 @@ { - version = "99.0b6"; + version = "101.0b9"; sources = [ - { url = "http://archive.mozilla.org/pub/firefox/releases/99.0b6/linux-x86_64/ach/firefox-99.0b6.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/101.0b9/linux-x86_64/ach/firefox-101.0b9.tar.bz2"; locale = "ach"; arch = "linux-x86_64"; - sha256 = "a540c52dbb973a85ee0f9fb116f7812e624d925dce77fe14a310f4bf5e6a0b58"; + sha256 = "3b6976610aecdcea2e4067875cd99948f3b90a19ba5c9cdc28a6468baedd9a91"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/99.0b6/linux-x86_64/af/firefox-99.0b6.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/101.0b9/linux-x86_64/af/firefox-101.0b9.tar.bz2"; locale = "af"; arch = "linux-x86_64"; - sha256 = "0f15edf10fc6ccb9f8bfba5cd6bbe83ac11df1b01fe9d5a1888f9b83a20b6d49"; + sha256 = "3e0fcee8180c294477cd331080bc47a09619b6ac326f1da2f404469d71aab65b"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/99.0b6/linux-x86_64/an/firefox-99.0b6.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/101.0b9/linux-x86_64/an/firefox-101.0b9.tar.bz2"; locale = "an"; arch = "linux-x86_64"; - sha256 = "769c936702fd344395e2fb949ddd2782f0e35096889c7c84027edfd9f08f5790"; + sha256 = "25d1afb8220d1b75dbc582590a05731396cbc09272f4bf4526a4ddee8df5ccc1"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/99.0b6/linux-x86_64/ar/firefox-99.0b6.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/101.0b9/linux-x86_64/ar/firefox-101.0b9.tar.bz2"; locale = "ar"; arch = "linux-x86_64"; - sha256 = "401b84fb1ce243e657018b0f6c98acc7838c7abcb0ed93772d56b1082135b479"; + sha256 = "c7889add14aa4bba4f8c6ef9ead2041abc09f0141dc1ce01643f740d13537b3d"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/99.0b6/linux-x86_64/ast/firefox-99.0b6.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/101.0b9/linux-x86_64/ast/firefox-101.0b9.tar.bz2"; locale = "ast"; arch = "linux-x86_64"; - sha256 = "2876d7dc456ead1a0efd867e3f683ea432589049ad85adf7ca5e7824f9dcfe66"; + sha256 = "1f96dba635dfc3db01409320352aa0b81c6c3fbb8e6a697fa1403e72b87547f1"; 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locale = "tr"; arch = "linux-i686"; - sha256 = "68e01ef5fe17667548b218b1b69b7ad9b9017647b5695623e6ab6b2ee7e704a1"; + sha256 = "d3aca0838f9cad9d89a64a1931c3eed797e18dc92d2a55c7492a0915a2c225bb"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/99.0b6/linux-i686/trs/firefox-99.0b6.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/101.0b9/linux-i686/trs/firefox-101.0b9.tar.bz2"; locale = "trs"; arch = "linux-i686"; - sha256 = "29adf4bc2783130d5b64edd8ea812000748938538b90f47e1f9ec704cf183752"; + sha256 = "d9a12fa029eacae9f8da979123d45aad8b5bfa266c242522b7afa63a060ab337"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/99.0b6/linux-i686/uk/firefox-99.0b6.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/101.0b9/linux-i686/uk/firefox-101.0b9.tar.bz2"; locale = "uk"; arch = "linux-i686"; - sha256 = "6953e34511ccb537fbbf2a6cca6369c2f8252e3025dc459bb809ffd44f602ea1"; + sha256 = "c15733c5a391ca5248626fff6eab633ae556d828f10395633ede013bc066a6a3"; 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locale = "vi"; arch = "linux-i686"; - sha256 = "0b714adab63f4551e2837b6fe439f1193d2c097cccd0d938e6ee069bf6273cf3"; + sha256 = "4886b762811649fe9c0ee970e48cd7fb58c9e9afa8ce24f8b071b74232be93c1"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/99.0b6/linux-i686/xh/firefox-99.0b6.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/101.0b9/linux-i686/xh/firefox-101.0b9.tar.bz2"; locale = "xh"; arch = "linux-i686"; - sha256 = "f15315fdc1e03b0bb2f834240f35a695b3f1173494b2ee1eaa36d7b154fcca4e"; + sha256 = "95f75a06bf14c603d41728892fe7cd942f36083134469125c64e3c4a61e5fbd8"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/99.0b6/linux-i686/zh-CN/firefox-99.0b6.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/101.0b9/linux-i686/zh-CN/firefox-101.0b9.tar.bz2"; locale = "zh-CN"; arch = "linux-i686"; - sha256 = "a959f20cea8596ef0447f0823056a6e500fdc6d38fe9bdbea06fdbb8ebe93973"; + sha256 = "86990983cb6143b8da7a88291964cd89d232d64b8b808c7e3e9dd41817b59460"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/99.0b6/linux-i686/zh-TW/firefox-99.0b6.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/101.0b9/linux-i686/zh-TW/firefox-101.0b9.tar.bz2"; locale = "zh-TW"; arch = "linux-i686"; - sha256 = "e2c8da8c23fbb7817ef215c035042d04f6a2a0705de9924c66c80759deb67e1c"; + sha256 = "a855bead500cdfbd85386f63a98fcf7f13c7f457291d1b913c5b2083dcff2759"; } ]; } diff --git a/pkgs/applications/networking/browsers/firefox-bin/devedition_sources.nix b/pkgs/applications/networking/browsers/firefox-bin/devedition_sources.nix index f05ccab2975..37c8751d4a0 100644 --- a/pkgs/applications/networking/browsers/firefox-bin/devedition_sources.nix +++ b/pkgs/applications/networking/browsers/firefox-bin/devedition_sources.nix @@ -1,985 +1,985 @@ { - version = "101.0b2"; + version = "101.0b9"; sources = [ - { url = "http://archive.mozilla.org/pub/devedition/releases/101.0b2/linux-x86_64/ach/firefox-101.0b2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/devedition/releases/101.0b9/linux-x86_64/ach/firefox-101.0b9.tar.bz2"; 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locale = "ur"; arch = "linux-i686"; - sha256 = "ec9dc26f00786e8dd084d08e7e9c5612e42ada7e5381e889d940915c9360c837"; + sha256 = "2c2f7c47bfd37f86c9d3850ab57041f87c612a0fb247a2cd19c35b8e3e443ec3"; } - { url = "http://archive.mozilla.org/pub/devedition/releases/101.0b2/linux-i686/uz/firefox-101.0b2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/devedition/releases/101.0b9/linux-i686/uz/firefox-101.0b9.tar.bz2"; locale = "uz"; arch = "linux-i686"; - sha256 = "9d4de951bfd5d1cf65718f0118807596ce48b2a6a4ce8d29c8ff3c963e39907d"; + sha256 = "e2ff4caf5379e4edf867c7c2e39785ff2f7426c524ae6b20915fd94e061ed8cd"; } - { url = "http://archive.mozilla.org/pub/devedition/releases/101.0b2/linux-i686/vi/firefox-101.0b2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/devedition/releases/101.0b9/linux-i686/vi/firefox-101.0b9.tar.bz2"; locale = "vi"; arch = "linux-i686"; - sha256 = "12726a8b22fdfe5d3e9637d665d7d4583e8762362032688367d3a8a5b96665a4"; + sha256 = "57c595c8c22709065795430586b2762edb67d2ca573232bc626952fb7abc6b3a"; } - { url = "http://archive.mozilla.org/pub/devedition/releases/101.0b2/linux-i686/xh/firefox-101.0b2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/devedition/releases/101.0b9/linux-i686/xh/firefox-101.0b9.tar.bz2"; locale = "xh"; arch = "linux-i686"; - sha256 = "64ee875cda3543a780a6da399ea7750027e85e4abe62d3eef4e4b21f3b0daa77"; + sha256 = "bdb23fab3ef55f03bc4c3ac4488fdb30b174ffbbcbc89d9387ccf9cd1528e91b"; } - { url = "http://archive.mozilla.org/pub/devedition/releases/101.0b2/linux-i686/zh-CN/firefox-101.0b2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/devedition/releases/101.0b9/linux-i686/zh-CN/firefox-101.0b9.tar.bz2"; locale = "zh-CN"; arch = "linux-i686"; - sha256 = "694bc6bfb4a8ac1bd95f756278fb68514a69e58c17e1a6576aa2574cdafbacd6"; + sha256 = "3019768b3a9115b07a2e3d05868598c656f0ced8c50500fdf55a4db959ebc4f0"; } - { url = "http://archive.mozilla.org/pub/devedition/releases/101.0b2/linux-i686/zh-TW/firefox-101.0b2.tar.bz2"; + { url = "http://archive.mozilla.org/pub/devedition/releases/101.0b9/linux-i686/zh-TW/firefox-101.0b9.tar.bz2"; locale = "zh-TW"; arch = "linux-i686"; - sha256 = "1a7fb5edb2ce72fb7e2b62f2e6e48f56d44522ef7f11af208b8a2a52e945bd98"; + sha256 = "73e243126bfa419e310f5f3aafa119b2ac516bea23c37e653193fa6bd75172a4"; } ]; } diff --git a/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix b/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix index d076c843fb7..ba279ca3382 100644 --- a/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix +++ b/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix @@ -1,985 +1,985 @@ { - version = "100.0"; + version = "100.0.2"; sources = [ - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-x86_64/ach/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-x86_64/ach/firefox-100.0.2.tar.bz2"; locale = "ach"; arch = "linux-x86_64"; - sha256 = "3e85609f0b3e4eb15262cd8567d8973bed2195f6a19199d76a99ed361cc0d0cf"; + sha256 = "c780a37812ae0aa875c3057a6bb6a7490912e1acf9b505558244347f5822a08e"; 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} - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/oc/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/oc/firefox-100.0.2.tar.bz2"; locale = "oc"; arch = "linux-i686"; - sha256 = "76d7b330ba2f5c7df4df6bdddda7a887a5222f0ba3caa13f77d6ea956ec7e685"; + sha256 = "8ae874315a44ac0e0de348082529e307ded81aae9252e2bb267b5eceddce65f3"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/pa-IN/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/pa-IN/firefox-100.0.2.tar.bz2"; locale = "pa-IN"; arch = "linux-i686"; - sha256 = "569b151ad53b47338ad8f78d4266247e7e7fa4ef207ee58b3606dc299b0f16af"; + sha256 = "d8c59bc7d2ce3f983fd8b0871d2f9a3ba59c4c6d82704923f5372b5e27be0d1d"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/pl/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/pl/firefox-100.0.2.tar.bz2"; locale = "pl"; arch = "linux-i686"; - sha256 = "af4ca741d8eb82e40775b0a2cc9338c2e81854df5107815bab8f4b6188c7189a"; + sha256 = "a4e8fb0156d7b3826adf9fd232caa548bc855926eae1ef67503ef76f72f216e2"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/pt-BR/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/pt-BR/firefox-100.0.2.tar.bz2"; locale = "pt-BR"; arch = "linux-i686"; - sha256 = "16ed593e6c116418ca5969a07fbcbd9f93af3972edc2227271256d269066b61d"; + sha256 = "938817deabf50ffbf3aac9aff7da7c97a9ce3758a6c78524fee99b24db2528a9"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/pt-PT/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/pt-PT/firefox-100.0.2.tar.bz2"; locale = "pt-PT"; arch = "linux-i686"; - sha256 = "2a5b5a26185ff4560691d5f32fbb29ecd9123df63020492aa2829e0088aa6b1b"; + sha256 = "0f3dc9df4946e917b6d3f5ba59cb5224c5b10ea03f0769dfbb62560774fdde8a"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/rm/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/rm/firefox-100.0.2.tar.bz2"; locale = "rm"; arch = "linux-i686"; - sha256 = "e80cf9ebb3010c97acd5d2f6cc672aa6ce4fdca930974238a148c2683f8a8dd8"; + sha256 = "957f9794b99fddc4b778e5f0aac854d5310e2e4c8f157f3d96602abb20a8e3fc"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/ro/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/ro/firefox-100.0.2.tar.bz2"; locale = "ro"; arch = "linux-i686"; - sha256 = "4db1842a3ead551700c83be677aacdd00e1957ecb6534f2b8933a19a6eedb38b"; + sha256 = "5fce2289eee60f15fc6c868192f571fa4faac863702bd35fcc65ba4b2b3270ca"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/ru/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/ru/firefox-100.0.2.tar.bz2"; locale = "ru"; arch = "linux-i686"; - sha256 = "6f821c7186343dc0bc5860bce1ae24f45c3de253223a0e99d05e582f037e7447"; + sha256 = "2c226a1da278e8924296c190c7e9cbd6f0d986652b4536ecc017626434507e50"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/sco/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/sco/firefox-100.0.2.tar.bz2"; locale = "sco"; arch = "linux-i686"; - sha256 = "e213b13f3ffc309feb993239308053d029f200fa58cb35f27a52e540e544e83c"; + sha256 = "5cb621b1686672305bc9c597a8f11dd44f205054ffe5690994cfff3907a0ab22"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/si/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/si/firefox-100.0.2.tar.bz2"; locale = "si"; arch = "linux-i686"; - sha256 = "a59e9a00f0e1b054e08706abb823ec7c6a87ca0975b97444f6cfd265e0c25b22"; + sha256 = "bb2ac6167632254f04ea446f5f819cab31fca61c630a9e2b17253f581017d27f"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/sk/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/sk/firefox-100.0.2.tar.bz2"; locale = "sk"; arch = "linux-i686"; - sha256 = "b6602ad437d41c679d43cbe7e705bb5ed31909591a8ef51ef4b5604b3a4c884e"; + sha256 = "e9740de798e369179a5b963f650ea003de3d8d2959989cd7a5a39ec49ca69016"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/sl/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/sl/firefox-100.0.2.tar.bz2"; locale = "sl"; arch = "linux-i686"; - sha256 = "b82f1f2745235271d7a99ad0c36f664b67826276a447285165100678f4de3030"; + sha256 = "881ba248e489edee338aca98792d206cb8f749ef957197a9d6498595ed85e721"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/son/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/son/firefox-100.0.2.tar.bz2"; locale = "son"; arch = "linux-i686"; - sha256 = "508c90bede375fe243f39a6ee26b972e0ec86bfa2978f3d01d0e83784731cafb"; + sha256 = "7a9774c565cafaa531b43cda5242f2d0d7fbf3c5daa595f53e1de4019125a7b6"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/sq/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/sq/firefox-100.0.2.tar.bz2"; locale = "sq"; arch = "linux-i686"; - sha256 = "db2799e56ade9c1b691d41803255a5fd1ddc08c69e199f5c1b253df11249cf67"; + sha256 = "2ed96996f3dd7a6da33403af096dbf8e077c141a8d7930384b916c43b606fbb8"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/sr/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/sr/firefox-100.0.2.tar.bz2"; locale = "sr"; arch = "linux-i686"; - sha256 = "d3502cba898ee0009292f942c2e3fc2ca0225cdd2470667bd943103fa7770201"; + sha256 = "15c96cc5f76b9067a0f7e7adb58ae23a37f9b06a5094c14bab382577fc4629db"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/sv-SE/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/sv-SE/firefox-100.0.2.tar.bz2"; locale = "sv-SE"; arch = "linux-i686"; - sha256 = "eca5f29ebd1e756206dde952980c03b8d4fb19c544bdf814bdab5ed05ce5fef3"; + sha256 = "608945e00e5322c6e7ca814154d3e6df333f8114ad21f0ffd8a9d87efd2a8972"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/szl/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/szl/firefox-100.0.2.tar.bz2"; locale = "szl"; arch = "linux-i686"; - sha256 = "fbc098de33187fde99bbf3d205882d281e404140619d624961d0b8d1af7e3fed"; + sha256 = "5fa3b0bc14887479c7a82ba17d2f6a63a3715b63ac5e19d4576af89f8c84ea10"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/ta/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/ta/firefox-100.0.2.tar.bz2"; locale = "ta"; arch = "linux-i686"; - sha256 = "a3f3f3472932be60c4f8296a13538bd12b898057a977dd7c33edc12016438dbd"; + sha256 = "08f646c6d6e64b954923cc02fdd820e413f3e3dc120b4d4fc189f52d70d7b6e6"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/te/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/te/firefox-100.0.2.tar.bz2"; locale = "te"; arch = "linux-i686"; - sha256 = "d0b562f554afa76bcc034eca7a167151a7ee38c6e82005d9a47273df08e6c0f5"; + sha256 = "514f5a8927a82c0b5ec4746554daffeac2403c10e7c76833d2d3cf77557820d4"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/th/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/th/firefox-100.0.2.tar.bz2"; locale = "th"; arch = "linux-i686"; - sha256 = "c362a365677131af77786b0f6390b62bd224ba26b7f79e69ad1826a6a15800db"; + sha256 = "93a6bcad7acf3588b13ee7e7537d68988785d04a245dcb2bb6bee7644d0bed73"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/tl/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/tl/firefox-100.0.2.tar.bz2"; locale = "tl"; arch = "linux-i686"; - sha256 = "8249e0d3bb2aaf5c0be9def1842874af417bae275ba224c912371049de62a43d"; + sha256 = "7c1ccf221ed095d7c8afbf8903ced04f908f90bc3c83cfb207b5c4c2c3155053"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/tr/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/tr/firefox-100.0.2.tar.bz2"; locale = "tr"; arch = "linux-i686"; - sha256 = "82a3a504ba862849c4574ed96bdc5a737479a06a21f011f6cd74b2001bb192ff"; + sha256 = "010dc56e6966947dd1a4a1b7462e7db842df03da955228e7d1a36906e7fbacfc"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/trs/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/trs/firefox-100.0.2.tar.bz2"; locale = "trs"; arch = "linux-i686"; - sha256 = "da6f0d69580df77ae2b1d091aecfbeda640440d3a15348ac38221209c6674079"; + sha256 = "c684639b05c2cac1b569ec22ae8a559dd4ef3f1f27bcbf350424142f752541fc"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/uk/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/uk/firefox-100.0.2.tar.bz2"; locale = "uk"; arch = "linux-i686"; - sha256 = "c04848cd11abb05635e33977c98f76b4acda3a6807c8f5bc8b5d2a9b49208f1d"; + sha256 = "799d73d67f45ece8ea1e30ab7b99a263c8a79cebb9cd47fbc373a6a145782a88"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/ur/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/ur/firefox-100.0.2.tar.bz2"; locale = "ur"; arch = "linux-i686"; - sha256 = "ba779105d6a9dfe3138f4b73ba60078ec66ad9fe8468f2d72f57dd19161fa09c"; + sha256 = "429b7fc64018c271a4177b746cb7a757cd1c3027e49a3f7e2cec25164b7d1950"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/uz/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/uz/firefox-100.0.2.tar.bz2"; locale = "uz"; arch = "linux-i686"; - sha256 = "190691fd5777153daa29d56542f6792356aa916073d5e842845fe1c9444e632b"; + sha256 = "9f1fde31d699fcefd001eb80aa3fb20fffacddd69cf9dcc83f16d20dec809444"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/vi/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/vi/firefox-100.0.2.tar.bz2"; locale = "vi"; arch = "linux-i686"; - sha256 = "b5ea01ae5980892d6379eac4ba7d0f3d2643c54ade18452d39be84e44c676c01"; + sha256 = "1286ea53f633fc126134f6f1787f72c676c8ef33668dc331d1fa9d02ddff015a"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/xh/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/xh/firefox-100.0.2.tar.bz2"; locale = "xh"; arch = "linux-i686"; - sha256 = "6c2f218caa8effa6fd6d9553088f7eb9a8ccf6297e3a9cd8c57d0ec5902c4c19"; + sha256 = "ae793a6c51bf274b5fa7f802325db70cd1d4aea5fef310dedd67d1945bebe3fd"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/zh-CN/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/zh-CN/firefox-100.0.2.tar.bz2"; locale = "zh-CN"; arch = "linux-i686"; - sha256 = "61838f9c25bec8dbb0d386ae8412f34be8701e0d6f593503eab51c2009c5e069"; + sha256 = "e7fc147e67eb25a1c5a4d7aebcaaed6830c3c532dc0c79568f5932c0b30f7399"; } - { url = "http://archive.mozilla.org/pub/firefox/releases/100.0/linux-i686/zh-TW/firefox-100.0.tar.bz2"; + { url = "http://archive.mozilla.org/pub/firefox/releases/100.0.2/linux-i686/zh-TW/firefox-100.0.2.tar.bz2"; locale = "zh-TW"; arch = "linux-i686"; - sha256 = "48ea7e4ae524dbb9ef83aada60b597524091be85a1dfc3665d1fdc9dba16498b"; + sha256 = "cddc2580b752569d6a71e96fb0c5f9f9fb93dbcdb25c64cdb66645731c415839"; } ]; } diff --git a/pkgs/applications/networking/browsers/firefox/common.nix b/pkgs/applications/networking/browsers/firefox/common.nix index 9321e491099..b2008a201d3 100644 --- a/pkgs/applications/networking/browsers/firefox/common.nix +++ b/pkgs/applications/networking/browsers/firefox/common.nix @@ -4,6 +4,7 @@ , updateScript ? null , binaryName ? "firefox" , application ? "browser" +, applicationName ? "Mozilla Firefox" , src , unpackPhase ? null , extraPatches ? [] @@ -18,11 +19,13 @@ { lib +, pkgs , stdenv # build time , autoconf , cargo +, dump_syms , makeWrapper , nodejs , perl @@ -160,6 +163,22 @@ let ln -s $lib $out/lib/wasm32-wasi done ''; + + distributionIni = pkgs.writeText "distribution.ini" (lib.generators.toINI {} { + # Some light branding indicating this build uses our distro preferences + Global = { + id = "nixos"; + version = "1.0"; + about = "${applicationName} for NixOS"; + }; + Preferences = { + # These values are exposed through telemetry + "app.distributor" = "nixos"; + "app.distributor.channel" = "nixpkgs"; + "app.partner.nixos" = "nixos"; + }; + }); + in buildStdenv.mkDerivation ({ @@ -168,6 +187,11 @@ buildStdenv.mkDerivation ({ inherit src unpackPhase meta; + outputs = [ + "out" + ] + ++ lib.optionals crashreporterSupport [ "symbols" ]; + # Add another configure-build-profiling run before the final configure phase if we build with pgo preConfigurePhases = lib.optionals pgoSupport [ "configurePhase" @@ -209,6 +233,7 @@ buildStdenv.mkDerivation ({ which wrapGAppsHook ] + ++ lib.optionals crashreporterSupport [ dump_syms ] ++ lib.optionals pgoSupport [ xvfb-run ] ++ extraNativeBuildInputs; @@ -231,13 +256,17 @@ buildStdenv.mkDerivation ({ # Set consistent remoting name to ensure wmclass matches with desktop file export MOZ_APP_REMOTINGNAME="${binaryName}" - # Use our own python - export MACH_USE_SYSTEM_PYTHON=1 - # AS=as in the environment causes build failure # https://bugzilla.mozilla.org/show_bug.cgi?id=1497286 unset AS + '' + lib.optionalString (lib.versionAtLeast version "100.0") '' + # Use our own python + export MACH_BUILD_PYTHON_NATIVE_PACKAGE_SOURCE=system + '' + lib.optionalString (lib.versionOlder version "100.0") '' + # Use our own python + export MACH_USE_SYSTEM_PYTHON=1 + '' + lib.optionalString (lib.versionAtLeast version "95.0") '' # RBox WASM Sandboxing export WASM_CC=${pkgsCross.wasi32.stdenv.cc}/bin/${pkgsCross.wasi32.stdenv.cc.targetPrefix}cc @@ -279,6 +308,7 @@ buildStdenv.mkDerivation ({ "--enable-application=${application}" "--enable-default-toolkit=cairo-gtk3${lib.optionalString waylandSupport "-wayland"}" "--enable-system-pixman" + "--with-distribution-id=org.nixos" "--with-libclang-path=${llvmPackages.libclang.lib}/lib" "--with-system-ffi" "--with-system-icu" @@ -408,11 +438,21 @@ buildStdenv.mkDerivation ({ # tests were disabled in configureFlags doCheck = false; - preInstall = '' + # Generate build symbols once after the final build + # https://firefox-source-docs.mozilla.org/crash-reporting/uploading_symbol.html + preInstall = lib.optionalString crashreporterSupport '' + ./mach buildsymbols + mkdir -p $symbols/ + cp mozobj/dist/*.crashreporter-symbols.zip $symbols/ + '' + '' cd mozobj ''; - postInstall = lib.optionalString buildStdenv.isLinux '' + postInstall = '' + # Install distribution customizations + install -Dvm644 ${distributionIni} $out/lib/${binaryName}/distribution/distribution.ini + + '' + lib.optionalString buildStdenv.isLinux '' # Remove SDK cruft. FIXME: move to a separate output? rm -rf $out/share/idl $out/include $out/lib/${binaryName}-devel-* diff --git a/pkgs/applications/networking/browsers/firefox/packages.nix b/pkgs/applications/networking/browsers/firefox/packages.nix index 10249aea4ee..43703daf278 100644 --- a/pkgs/applications/networking/browsers/firefox/packages.nix +++ b/pkgs/applications/networking/browsers/firefox/packages.nix @@ -3,10 +3,10 @@ rec { firefox = buildMozillaMach rec { pname = "firefox"; - version = "100.0"; + version = "100.0.2"; src = fetchurl { url = "mirror://mozilla/firefox/releases/${version}/source/firefox-${version}.source.tar.xz"; - sha512 = "29c56391c980209ff94c02a9aba18fe27bea188bdcbcf7fe0c0f27f61e823f4507a3ec343b27cb5285cf3901843e9cc4aca8e568beb623c4b69b7282e662b2aa"; + sha512 = "6d9922e35e496fa63833ba03d1466e075287e40e50854ddc4f4a2036d9c7ca1f35c03bc6f708a3c469e0ec3b389b3346ac754bb84df0fecb86955fc21c05e00f"; }; meta = { @@ -28,10 +28,11 @@ rec { firefox-esr-91 = buildMozillaMach rec { pname = "firefox-esr"; - version = "91.9.0esr"; + version = "91.9.1esr"; + applicationName = "Mozilla Firefox ESR"; src = fetchurl { url = "mirror://mozilla/firefox/releases/${version}/source/firefox-${version}.source.tar.xz"; - sha512 = "fd69d489429052013d2c1b8b766a47920ecee62f0688505758f593b27ae66d6343b9107163749406251aedebdf836147e4d562415a811b04d7ab2ae31e32f133"; + sha512 = "d432d559f2c5f4b0bc66a755db7d61585e24a727cd8d18630854b3fb8633d54baf61ed65b580345b13d52b66288aa15ca8ca5cfcde8231e88108241f0b007683"; }; meta = { diff --git a/pkgs/applications/networking/browsers/lagrange/default.nix b/pkgs/applications/networking/browsers/lagrange/default.nix index 1c573eb1a58..4f778ae1389 100644 --- a/pkgs/applications/networking/browsers/lagrange/default.nix +++ b/pkgs/applications/networking/browsers/lagrange/default.nix @@ -17,13 +17,13 @@ stdenv.mkDerivation rec { pname = "lagrange"; - version = "1.13.3"; + version = "1.13.5"; src = fetchFromGitHub { owner = "skyjake"; repo = "lagrange"; rev = "v${version}"; - sha256 = "sha256-ZCG7i5WmhONockaTt/YCww7N+WvxCX2DIwQIFjAk+K8="; + sha256 = "sha256-HZGI9vWSYCDH0lW+k6hvPm3UVW6lR8Lhr3H7blNupNk="; }; nativeBuildInputs = [ cmake pkg-config zip ]; diff --git a/pkgs/applications/networking/browsers/librewolf/default.nix b/pkgs/applications/networking/browsers/librewolf/default.nix index 8f3100de970..bec0c3a9eda 100644 --- a/pkgs/applications/networking/browsers/librewolf/default.nix +++ b/pkgs/applications/networking/browsers/librewolf/default.nix @@ -5,6 +5,7 @@ let in (buildMozillaMach rec { pname = "librewolf"; + applicationName = "LibreWolf"; binaryName = "librewolf"; version = librewolf-src.packageVersion; src = librewolf-src.firefox; diff --git a/pkgs/applications/networking/browsers/librewolf/src.json b/pkgs/applications/networking/browsers/librewolf/src.json index 8f36d68e7f2..5bad3f1ed7f 100644 --- a/pkgs/applications/networking/browsers/librewolf/src.json +++ b/pkgs/applications/networking/browsers/librewolf/src.json @@ -1,8 +1,8 @@ { - "packageVersion": "100.0-2", + "packageVersion": "100.0-3", "source": { - "rev": "100.0-2", - "sha256": "0pr7fb91zw5qlnfvaavzksd3c2xzgn1344mmfnz9yx2g42vcyi7d" + "rev": "100.0-3", + "sha256": "1n99amk6ngxa7wipc402gffqjv4qmgbaahpz3xydfarxw8gk37pl" }, "firefox": { "version": "100.0", diff --git a/pkgs/applications/networking/browsers/netsurf/libnsutils.nix b/pkgs/applications/networking/browsers/netsurf/libnsutils.nix index b0d954a00d4..bba457674c7 100644 --- a/pkgs/applications/networking/browsers/netsurf/libnsutils.nix +++ b/pkgs/applications/networking/browsers/netsurf/libnsutils.nix @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { ]; meta = with lib; { - homepage = "https://www.netsurf-browser.org/projects/${libname}/"; + homepage = "https://www.netsurf-browser.org/"; description = "Generalised utility library for netsurf browser"; license = licenses.mit; maintainers = [ maintainers.vrthra maintainers.AndersonTorres ]; diff --git a/pkgs/applications/networking/browsers/netsurf/libutf8proc.nix b/pkgs/applications/networking/browsers/netsurf/libutf8proc.nix index c7362b998be..47b53b4781b 100644 --- a/pkgs/applications/networking/browsers/netsurf/libutf8proc.nix +++ b/pkgs/applications/networking/browsers/netsurf/libutf8proc.nix @@ -1,4 +1,7 @@ -{ lib, stdenv, fetchurl, pkg-config +{ lib +, stdenv +, fetchurl +, pkg-config , buildsystem }: @@ -9,10 +12,11 @@ stdenv.mkDerivation rec { src = fetchurl { url = "http://download.netsurf-browser.org/libs/releases/${libname}-${version}-src.tar.gz"; - sha256 = "sha256-AasdaYnBx3VQkNskw/ZOSflcVgrknCa+xRQrrGgCxHI="; + hash = "sha256-AasdaYnBx3VQkNskw/ZOSflcVgrknCa+xRQrrGgCxHI="; }; nativeBuildInputs = [ pkg-config ]; + buildInputs = [ buildsystem ]; makeFlags = [ @@ -21,7 +25,7 @@ stdenv.mkDerivation rec { ]; meta = with lib; { - homepage = "https://www.netsurf-browser.org/projects/${libname}/"; + homepage = "https://www.netsurf-browser.org/"; description = "UTF8 Processing library for netsurf browser"; license = licenses.mit; maintainers = [ maintainers.vrthra maintainers.AndersonTorres ]; diff --git a/pkgs/applications/networking/cluster/assign-lb-ip/default.nix b/pkgs/applications/networking/cluster/assign-lb-ip/default.nix index b699f4410c6..dadb679cd55 100644 --- a/pkgs/applications/networking/cluster/assign-lb-ip/default.nix +++ b/pkgs/applications/networking/cluster/assign-lb-ip/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "assign-lb-ip"; - version = "2.3.0"; + version = "2.3.1"; src = fetchFromGitHub { owner = "Nordix"; repo = pname; rev = "v${version}"; - sha256 = "sha256-VaxzU8HC+LQTyhL9pxvjiPa6T5v77RT2B7A0IuU/CUg="; + sha256 = "sha256-Sfi58wcX61HNCmlDoparTqnfsuxu6barSnV0uYlC+ng="; }; - vendorSha256 = "sha256-j9SweQq45sYk0lH6zkFrmWRlVhhMO8rLJGQxS6smAVw="; + vendorSha256 = "sha256-N78a0pjs2Bg2Bslk/I0ntL88ui4IkRGenL0Pn17Lt/w="; meta = with lib; { description = "Assigns loadBalancerIP address to a Kubernetes service for testing purposes"; diff --git a/pkgs/applications/networking/cluster/civo/default.nix b/pkgs/applications/networking/cluster/civo/default.nix new file mode 100644 index 00000000000..9066cbe7b9c --- /dev/null +++ b/pkgs/applications/networking/cluster/civo/default.nix @@ -0,0 +1,40 @@ +{ stdenv, lib, buildGoModule, fetchFromGitHub }: + +buildGoModule rec { + pname = "civo"; + version = "1.0.28"; + + src = fetchFromGitHub { + owner = "civo"; + repo = "cli"; + rev = "v${version}"; + sha256 = "sha256-PuLmjX7ps0pdfaDpshWrc67OW83/jpB4HkNCi1fzpAU="; + }; + + vendorSha256 = "sha256-VMBMiwBFXKe+E4Xzcmhu2Ge5JzS+jIbUtxTfp+B0EWE="; + + CGO_ENABLED = 0; + + # Some lint checks fail + doCheck = false; + + ldflags = [ + "-s" + "-X github.com/civo/cli/cmd.VersionCli=${version}" + "-X github.com/civo/cli/cmd.CommitCli=${src.rev}" + "-X github.com/civo/cli/cmd.DateCli=unknown" + ]; + + doInstallCheck = false; + + postInstall = '' + mv $out/bin/cli $out/bin/civo + ''; + + meta = with lib; { + description = "CLI for interacting with Civo resources"; + homepage = "https://github.com/civo/cli"; + license = licenses.asl20; + maintainers = with maintainers; [ berryp ]; + }; +} diff --git a/pkgs/applications/networking/cluster/driftctl/default.nix b/pkgs/applications/networking/cluster/driftctl/default.nix index 899b7514622..0cd05cfddd5 100644 --- a/pkgs/applications/networking/cluster/driftctl/default.nix +++ b/pkgs/applications/networking/cluster/driftctl/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "driftctl"; - version = "0.29.0"; + version = "0.30.0"; src = fetchFromGitHub { owner = "snyk"; repo = "driftctl"; rev = "v${version}"; - sha256 = "sha256-cn0PhumDaOhTm1vZCj0h9XehnQCDc+mXtne7QQNSbBk="; + sha256 = "sha256-kjXqkaBF3rAaGnDDVmAoFmvH4t8/seC+KF7K78eKZco="; }; vendorSha256 = "sha256-bsIPEjD/kCUvkRKP85CjW3JJf1Hyx9b2pMY9S4HlKrA="; diff --git a/pkgs/applications/networking/cluster/helm/default.nix b/pkgs/applications/networking/cluster/helm/default.nix index b6f9028d52a..e62e7c99980 100644 --- a/pkgs/applications/networking/cluster/helm/default.nix +++ b/pkgs/applications/networking/cluster/helm/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "kubernetes-helm"; - version = "3.8.2"; - gitCommit = "6e3701edea09e5d55a8ca2aae03a68917630e91b"; + version = "3.9.0"; + gitCommit = "7ceeda6c585217a19a1131663d8cd1f7d641b2a7"; src = fetchFromGitHub { owner = "helm"; repo = "helm"; rev = "v${version}"; - sha256 = "sha256-lFAzp7ZxyMZAEO1cNFkEPLgTLEGa6azv36xiTIz4FZY="; + sha256 = "sha256-pdWFCepVGSJmlYnvcJCaNaGSllbeh/oCdosrab8jA4s="; }; - vendorSha256 = "sha256-FLEydmR+UEZ80VYLxBU1ZdwpdLgTjUpqiMItnt9UuLY="; + vendorSha256 = "sha256-r0a38ZB6VlyzKB66+OAllRLXhqwO0qbksZjOrBWdjqM="; subPackages = [ "cmd/helm" ]; ldflags = [ diff --git a/pkgs/applications/networking/cluster/k0sctl/default.nix b/pkgs/applications/networking/cluster/k0sctl/default.nix index 256d7e64225..b30a7174902 100644 --- a/pkgs/applications/networking/cluster/k0sctl/default.nix +++ b/pkgs/applications/networking/cluster/k0sctl/default.nix @@ -1,20 +1,29 @@ { lib , buildGoModule , fetchFromGitHub +, fetchpatch +, installShellFiles }: buildGoModule rec { pname = "k0sctl"; - version = "0.11.4"; + version = "0.12.6"; src = fetchFromGitHub { owner = "k0sproject"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Fk1aYSa3LqzxiHtlzH5pcNtodOprjfnCFh4UMqCa6Rc="; + sha256 = "sha256-TkkMO6xBHY5t5Rpd0ieSDXMrnQ+Xdq+65Rk93ZkYcUs="; }; - vendorSha256 = "sha256-21C6wZ8lKQnbUg3aD0ZFVOgopblXyWk4WP/ubZVk3Yk="; + vendorSha256 = "sha256-nTAuvHcsJiW0XYX5GM1SL8cnOhwdrj6iw8tuAkEWNzQ="; + + patches = [ + (fetchpatch { + url = "https://github.com/k0sproject/${pname}/commit/22c694ab0335a1e6146d0d3f939ef79d2c005a3d.patch"; + sha256 = "sha256-Ftq/vbQd5ArdHboDt6NdyuqpFalHVnsQBdpmyDG/t5Q="; + }) + ]; ldflags = [ "-s" @@ -23,6 +32,15 @@ buildGoModule rec { "-X github.com/k0sproject/k0sctl/version.Version=${version}" ]; + nativeBuildInputs = [ installShellFiles ]; + + postInstall = '' + for shell in bash zsh fish; do + installShellCompletion --cmd ${pname} \ + --$shell <($out/bin/${pname} completion --shell $shell) + done + ''; + meta = with lib; { description = "A bootstrapping and management tool for k0s clusters."; homepage = "https://k0sproject.io/"; diff --git a/pkgs/applications/networking/cluster/krane/Gemfile.lock b/pkgs/applications/networking/cluster/krane/Gemfile.lock index ba7e5bb0a63..e886f40c8a5 100644 --- a/pkgs/applications/networking/cluster/krane/Gemfile.lock +++ b/pkgs/applications/networking/cluster/krane/Gemfile.lock @@ -1,7 +1,7 @@ GEM remote: https://rubygems.org/ specs: - activesupport (7.0.2.3) + activesupport (7.0.3) concurrent-ruby (~> 1.0, >= 1.0.2) i18n (>= 1.6, < 2) minitest (>= 5.1) @@ -60,7 +60,7 @@ GEM ffi-compiler (>= 1.0, < 2.0) i18n (1.10.0) concurrent-ruby (~> 1.0) - jsonpath (1.1.1) + jsonpath (1.1.2) multi_json jwt (2.3.0) krane (2.4.6) diff --git a/pkgs/applications/networking/cluster/krane/gemset.nix b/pkgs/applications/networking/cluster/krane/gemset.nix index 058910072a7..3c18789c095 100644 --- a/pkgs/applications/networking/cluster/krane/gemset.nix +++ b/pkgs/applications/networking/cluster/krane/gemset.nix @@ -5,10 +5,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1jpydd414j0fig3r0f6ci67mchclg6cq2qgqbq9zplrbg40pzfi8"; + sha256 = "0z05zyc57f8ywvdvls6nx93vrhyyzzpgz729mwampz1qb8vvcspj"; type = "gem"; }; - version = "7.0.2.3"; + version = "7.0.3"; }; addressable = { dependencies = ["public_suffix"]; @@ -276,10 +276,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0slr38w21gwizkq4nk6c7l7lcqc2c733zfn5fq1pmbwy5bwiggad"; + sha256 = "0fkdjic88hh0accp0sbx5mcrr9yaqwampf5c3214212d4i614138"; type = "gem"; }; - version = "1.1.1"; + version = "1.1.2"; }; jwt = { groups = ["default"]; diff --git a/pkgs/applications/networking/cluster/kube-router/default.nix b/pkgs/applications/networking/cluster/kube-router/default.nix index b9a282b5cd1..c74fdbc749d 100644 --- a/pkgs/applications/networking/cluster/kube-router/default.nix +++ b/pkgs/applications/networking/cluster/kube-router/default.nix @@ -1,23 +1,33 @@ -{ lib, buildGoPackage, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub, testers, kube-router }: -buildGoPackage rec { +buildGoModule rec { pname = "kube-router"; - version = "1.2.2"; - - goPackagePath = "github.com/cloudnativelabs/kube-router"; + version = "1.4.0"; src = fetchFromGitHub { owner = "cloudnativelabs"; repo = pname; rev = "v${version}"; - sha256 = "sha256-/VToLQexvRtcBU+k8WnGEcfLfxme/hgRnhU8723BEFU="; + sha256 = "sha256-WBnJPCZHtJWckoFvE8e+eAa2EC/RA7yOMlW+Cemw53Q="; }; + vendorSha256 = "sha256-5co+288KZf/dx/jZ7xIGh6kxuW3DdbpAsrZgYob3nWk="; + + CGO_ENABLED = 0; + ldflags = [ - "-X ${goPackagePath}/pkg/cmd.version=${version}" - "-X ${goPackagePath}/pkg/cmd.buildDate=Nix" + "-s" + "-w" + "-X github.com/cloudnativelabs/kube-router/pkg/version.Version=${version}" + "-X github.com/cloudnativelabs/kube-router/pkg/version.BuildDate=Nix" ]; + checkFlags = [ "-short" ]; + + passthru.tests.version = testers.testVersion { + package = kube-router; + }; + meta = with lib; { homepage = "https://www.kube-router.io/"; description = "All-in-one router, firewall and service proxy for Kubernetes"; diff --git a/pkgs/applications/networking/cluster/kubeseal/default.nix b/pkgs/applications/networking/cluster/kubeseal/default.nix index 72218fa2209..56b195f4e54 100644 --- a/pkgs/applications/networking/cluster/kubeseal/default.nix +++ b/pkgs/applications/networking/cluster/kubeseal/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "kubeseal"; - version = "0.17.0"; + version = "0.17.5"; src = fetchFromGitHub { owner = "bitnami-labs"; repo = "sealed-secrets"; rev = "v${version}"; - sha256 = "sha256-7u7lsMeeZOUGn8eb8sjV9Td+XNEUPDvbSaITdp1JTf4="; + sha256 = "0wrsfbsjf74qss4mfhjpc1h4lhfmwib83bd2i28g4yd00qq958vj"; }; - vendorSha256 = null; + vendorSha256 = "sha256-/rZRDH5Id8ft2oe0U/uhEgBgb0nhaQ8O5wjrSftvBzA="; subPackages = [ "cmd/kubeseal" ]; diff --git a/pkgs/applications/networking/cluster/kuma/default.nix b/pkgs/applications/networking/cluster/kuma/default.nix index b6d1ac47759..ccd933e4ad5 100644 --- a/pkgs/applications/networking/cluster/kuma/default.nix +++ b/pkgs/applications/networking/cluster/kuma/default.nix @@ -16,15 +16,15 @@ buildGoModule rec { inherit pname ; - version = "1.4.1"; + version = "1.5.0"; tags = lib.optionals enableGateway ["gateway"]; - vendorSha256 = "sha256-9v+ti/JTAF4TLZ0uvzFvrB0YBnRD2E0Q6K2yicEX3Zw="; + vendorSha256 = "sha256-ND1OTa37bxUNLDHceKdgiGE4LkEgBu9NmwuXtE4pZWk="; src = fetchFromGitHub { owner = "kumahq"; repo = "kuma"; rev = version; - sha256 = "sha256-zx4rohkv6jm2abtd0I/uQMITkCuhY3StHMKoaTxce0Q="; + sha256 = "sha256-CnL+OQfM1lamdCRHTLRmgpwfEfC7C9TX6UEF75bsOsQ="; }; doCheck = false; diff --git a/pkgs/applications/networking/cluster/lens/default.nix b/pkgs/applications/networking/cluster/lens/default.nix index 66c507312c2..151649ba22e 100644 --- a/pkgs/applications/networking/cluster/lens/default.nix +++ b/pkgs/applications/networking/cluster/lens/default.nix @@ -1,4 +1,4 @@ -{ lib, fetchurl, appimageTools, wrapGAppsHook, gsettings-desktop-schemas, gtk3 }: +{ lib, fetchurl, appimageTools, wrapGAppsHook }: let pname = "lens"; @@ -20,10 +20,6 @@ in appimageTools.wrapType2 { inherit name src; - profile = '' - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS - ''; - extraInstallCommands = '' mv $out/bin/${name} $out/bin/${pname} diff --git a/pkgs/applications/networking/cluster/nerdctl/default.nix b/pkgs/applications/networking/cluster/nerdctl/default.nix index acc3370ce83..5de2f03be7d 100644 --- a/pkgs/applications/networking/cluster/nerdctl/default.nix +++ b/pkgs/applications/networking/cluster/nerdctl/default.nix @@ -10,16 +10,16 @@ buildGoModule rec { pname = "nerdctl"; - version = "0.19.0"; + version = "0.20.0"; src = fetchFromGitHub { owner = "containerd"; repo = pname; rev = "v${version}"; - sha256 = "sha256-FuWfHd4LfFHX5oRopDIDTi90cARi8cYjJBK0BgeCD/U="; + sha256 = "sha256-5bigfsig2LkZoLUlA6764ttG85CNi6rmOgQck+/zc5c="; }; - vendorSha256 = "sha256-mHitGjOfSRlqORWFtB16buSSJrCf7Li9+oHX4rcO4ek="; + vendorSha256 = "sha256-Ei4L35/RN2en7gOUzvGflBivTlBy2YnUvTHqcCe5HN4="; nativeBuildInputs = [ makeWrapper installShellFiles ]; diff --git a/pkgs/applications/networking/cluster/nomad-pack/default.nix b/pkgs/applications/networking/cluster/nomad-pack/default.nix index 394e75f9112..5c5cb7c4a61 100644 --- a/pkgs/applications/networking/cluster/nomad-pack/default.nix +++ b/pkgs/applications/networking/cluster/nomad-pack/default.nix @@ -5,17 +5,17 @@ buildGoModule rec { pname = "nomad-pack"; - version = "2022-04-12"; - rev = "50ad747d2a5a2b90af1b3564483510cb04fefbea"; + version = "2022-05-12"; + rev = "bee6e8e078ff31fee916b864fbf3648294dbcdf5"; src = fetchFromGitHub { owner = "hashicorp"; repo = pname; inherit rev; - sha256 = "sha256-VG6Dmx5WD2AzKReMbmrpzXCNhrJqaZY3aQV9P+4ET68="; + sha256 = "sha256-28Dx9z7T+4WXl4voAzlSR2h3HcZMSzOuX7FHLJ4q9Sc="; }; - vendorSha256 = "sha256-7ovR2F9N94iFK/B5OXRcqfykOYHST3354+Ge2L8yzq0="; + vendorSha256 = "sha256-hPsO842gmk77qc27slV2TiYNI7Ofw1RqGgcLP1gdgJ0="; # skip running go tests as they require network access doCheck = false; diff --git a/pkgs/applications/networking/cluster/octant/desktop.nix b/pkgs/applications/networking/cluster/octant/desktop.nix index 1a86a66fa29..b34e167e8c9 100644 --- a/pkgs/applications/networking/cluster/octant/desktop.nix +++ b/pkgs/applications/networking/cluster/octant/desktop.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, appimageTools, fetchurl, gsettings-desktop-schemas, gtk3, undmg }: +{ lib, stdenv, appimageTools, fetchurl, undmg }: let pname = "octant-desktop"; @@ -25,7 +25,6 @@ let profile = '' export LC_ALL=C.UTF-8 - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS ''; multiPkgs = null; # no 32bit needed diff --git a/pkgs/applications/networking/cluster/talosctl/default.nix b/pkgs/applications/networking/cluster/talosctl/default.nix index 7eb4f43e479..8476fc810ba 100644 --- a/pkgs/applications/networking/cluster/talosctl/default.nix +++ b/pkgs/applications/networking/cluster/talosctl/default.nix @@ -1,11 +1,11 @@ { lib, buildGoModule, fetchFromGitHub, installShellFiles }: let # look for GO_LDFLAGS getting set in the Makefile - version = "1.0.4"; - sha256 = "sha256-kO48MRQDQGDUvFfsxAt+CAHn2EGU44NMpSKDWnNwAdk="; - vendorSha256 = "sha256-QcD5MKQO51ZZ/NvVIiAmDsN6wLI2N8YkhA387KB77W8="; - pkgsVersion = "v1.0.0-10-gbf81bd2"; - extrasVersion = "v1.0.0-2-gc5d3ab0"; + version = "1.0.5"; + sha256 = "sha256-xgzIbhgV1AAUa0tooYtzUMqK4Co3PvWQ0YbZuf0JgFE="; + vendorSha256 = "sha256-Gp30qCGV+EaJ1lvfleZHRWVL6rdSj0mvpumWsqr9IT0="; + pkgsVersion = "v1.0.0-17-g7567bf4"; + extrasVersion = "v1.0.0-3-g6327c36"; in buildGoModule rec { pname = "talosctl"; diff --git a/pkgs/applications/networking/cluster/temporal-cli/default.nix b/pkgs/applications/networking/cluster/temporal-cli/default.nix new file mode 100644 index 00000000000..49d64283ca0 --- /dev/null +++ b/pkgs/applications/networking/cluster/temporal-cli/default.nix @@ -0,0 +1,38 @@ +{ lib, fetchFromGitHub, fetchpatch, buildGoModule, testers, temporal-cli }: + +buildGoModule rec { + pname = "temporal-cli"; + version = "1.16.1"; + + src = fetchFromGitHub { + owner = "temporalio"; + repo = "tctl"; + rev = "v${version}"; + sha256 = "sha256-WNdu/62/VmxTmzAvzx3zIlcAAlEmpN0yKzQOSUtrL8s="; + }; + + patches = [ + # Fix tests + (fetchpatch { + name = "fix-tests.patch"; + url = "https://github.com/temporalio/tctl/pull/203/commits/2b113da137a3a925e8fbd7c18bdaaefc31397db4.patch"; + sha256 = "sha256-HFPwbmLZ2uPHzaHvYoB4MTZvMVyzvUKggA76/bh50DQ="; + }) + ]; + + vendorSha256 = "sha256-WF3T+HNisfR0JoKkHCC77kmHmsGZ9NfQ7UCwOmpCG/o="; + + ldflags = [ "-s" "-w" ]; + + passthru.tests.version = testers.testVersion { + package = temporal-cli; + }; + + meta = with lib; { + description = "Temporal CLI"; + homepage = "https://temporal.io"; + license = licenses.mit; + maintainers = with maintainers; [ aaronjheng ]; + mainProgram = "tctl"; + }; +} diff --git a/pkgs/applications/networking/cluster/temporal/default.nix b/pkgs/applications/networking/cluster/temporal/default.nix index 2475dd0f1d9..db423d619b5 100644 --- a/pkgs/applications/networking/cluster/temporal/default.nix +++ b/pkgs/applications/networking/cluster/temporal/default.nix @@ -1,38 +1,37 @@ -{ lib, fetchFromGitHub, buildGoModule }: +{ lib, fetchFromGitHub, buildGoModule, testers, temporal }: buildGoModule rec { pname = "temporal"; - version = "1.15.0"; + version = "1.16.2"; src = fetchFromGitHub { owner = "temporalio"; repo = "temporal"; rev = "v${version}"; - sha256 = "sha256-5Tu838086qgIa2fqda2xi7vn4JbkENVJH4XU3NwW7Ic="; + sha256 = "sha256-MPfyjRpjfnuVbj+Pd7yIlaEJCiX1IEy/Lwwkv23kugw="; }; - vendorSha256 = "sha256-caRBgkuHQ38r6OsKQCJ2pxAe8s6mc4g/QCIsCEXvY3M="; + vendorSha256 = "sha256-82W1nHhHvvU6poh5szuH9lDkq6YHgyfsJSubxotV270="; - # Errors: - # > === RUN TestNamespaceHandlerGlobalNamespaceDisabledSuite - # gocql: unable to dial control conn 127.0.0.1:9042: dial tcp 127.0.0.1:9042: connect: connection refused - doCheck = false; + CGO_ENABLED = 0; + + ldflags = [ "-s" "-w" ]; + + checkFlags = [ "-short" ]; installPhase = '' runHook preInstall - mkdir -p $out/bin - install -Dm755 "$GOPATH/bin/cli" -T $out/bin/tctl - install -Dm755 "$GOPATH/bin/authorization" -T $out/bin/tctl-authorization-plugin + install -Dm755 "$GOPATH/bin/server" -T $out/bin/temporal-server install -Dm755 "$GOPATH/bin/cassandra" -T $out/bin/temporal-cassandra-tool install -Dm755 "$GOPATH/bin/sql" -T $out/bin/temporal-sql-tool + runHook postInstall ''; - doInstallCheck = true; - installCheckPhase = '' - $out/bin/tctl --version | grep ${version} > /dev/null - ''; + passthru.tests.version = testers.testVersion { + package = temporal; + }; meta = with lib; { description = "A microservice orchestration platform which enables developers to build scalable applications without sacrificing productivity or reliability"; @@ -40,5 +39,6 @@ buildGoModule rec { changelog = "https://github.com/temporalio/temporal/releases/tag/v${version}"; license = licenses.mit; maintainers = with maintainers; [ titanous ]; + mainProgram = "temporal-server"; }; } diff --git a/pkgs/applications/networking/cluster/terraform-inventory/default.nix b/pkgs/applications/networking/cluster/terraform-inventory/default.nix index 085b504314e..783f9c79bb7 100644 --- a/pkgs/applications/networking/cluster/terraform-inventory/default.nix +++ b/pkgs/applications/networking/cluster/terraform-inventory/default.nix @@ -1,22 +1,25 @@ -{ lib, buildGoPackage, fetchFromGitHub}: +{ lib, buildGoModule, fetchFromGitHub, testers, terraform-inventory }: -buildGoPackage rec { +buildGoModule rec { pname = "terraform-inventory"; - version = "0.7-pre"; - rev = "v${version}"; - - goPackagePath = "github.com/adammck/terraform-inventory"; - - subPackages = [ "./" ]; + version = "0.10"; src = fetchFromGitHub { - inherit rev; owner = "adammck"; repo = "terraform-inventory"; - sha256 = "0wwyi2nfyn3wfpmvj8aabn0cjba0lpr5nw3rgd6qdywy7sc3rmb1"; + rev = "v${version}"; + sha256 = "sha256-gkSDxcBoYmCBzkO8y1WKcRtZdfl8w5qVix0zbyb4Myo="; }; - goDeps = ./deps.nix; + vendorSha256 = "sha256-pj9XLzaGU1PuNnpTL/7XaKJZUymX+i8hFMroZtHIqTc="; + + ldflags = [ "-s" "-w" "-X main.build_version=${version}" ]; + + doCheck = false; + + passthru.tests.version = testers.testVersion { + package = terraform-inventory; + }; meta = with lib; { homepage = "https://github.com/adammck/terraform-inventory"; diff --git a/pkgs/applications/networking/cluster/terraform-inventory/deps.nix b/pkgs/applications/networking/cluster/terraform-inventory/deps.nix deleted file mode 100644 index 9f7b5e317fe..00000000000 --- a/pkgs/applications/networking/cluster/terraform-inventory/deps.nix +++ /dev/null @@ -1,20 +0,0 @@ -[ - { - goPackagePath = "github.com/adammck/venv"; - fetch = { - type = "git"; - url = "https://github.com/adammck/venv"; - rev = "8a9c907a37d36a8f34fa1c5b81aaf80c2554a306"; - sha256 = "1fzk3j4q59kpd2ks2aw8rmic6b123p5mh981cjh0kzs716grc6y8"; - }; - } - { - goPackagePath = "github.com/blang/vfs"; - fetch = { - type = "git"; - url = "https://github.com/blang/vfs"; - rev = "c14afcac17253ce7418da751ec6b1988790cdc8f"; - sha256 = "00q5qzxpn9n59nrmrljz4w9lljxvrr8i5j8i8b4iw86j0alcx53b"; - }; - } -] diff --git a/pkgs/applications/networking/cluster/terraform-providers/providers.json b/pkgs/applications/networking/cluster/terraform-providers/providers.json index 82e0d6ff851..d013eae7550 100644 --- a/pkgs/applications/networking/cluster/terraform-providers/providers.json +++ b/pkgs/applications/networking/cluster/terraform-providers/providers.json @@ -3,10 +3,10 @@ "owner": "CiscoDevNet", "provider-source-address": "registry.terraform.io/CiscoDevNet/aci", "repo": "terraform-provider-aci", - "rev": "v2.1.0", - "sha256": "sha256-7fOvTEinJUpSaCnlP+191VTSEpE4z11+HUcH2iTFj60=", + "rev": "v2.2.1", + "sha256": "sha256-WYKlkvGmTeaI4+7uWLy6/y+NtFb9n3Lu9lrwSR8Vg/0=", "vendorSha256": null, - "version": "2.1.0" + "version": "2.2.1" }, "acme": { "owner": "vancluever", @@ -30,10 +30,10 @@ "owner": "aiven", "provider-source-address": "registry.terraform.io/aiven/aiven", "repo": "terraform-provider-aiven", - "rev": "v2.7.3", - "sha256": "sha256-ZAYnP2XEa2eJ0YZkqXQedRysmQI31RQ1osg/TqCqthE=", - "vendorSha256": "sha256-nBVLgOrtINrDziQLdqo5rFWfeY/cOdBW/XVDjtNaNhE=", - "version": "2.7.3" + "rev": "v3.0.0", + "sha256": "sha256-k3F6AUcGAddDD3Wy1THgTlcNzDBB403Vy+6c+avi+vQ=", + "vendorSha256": "sha256-gVZpN7Hwi+PbJDgEHSJRYq0tC1GVcetfPBY5pGhMPAc=", + "version": "3.0.0" }, "akamai": { "owner": "akamai", @@ -49,10 +49,10 @@ "owner": "aliyun", "provider-source-address": "registry.terraform.io/aliyun/alicloud", "repo": "terraform-provider-alicloud", - "rev": "v1.166.0", - "sha256": "sha256-+aRRsN3ALTmQOnDciHjoVFKV/W+/gjtdZeg3eyJ+0fY=", - "vendorSha256": "sha256-2w8o0Fc61ayyUyE4RVcmV4A0heuaIXnOZX040l2ws/Y=", - "version": "1.166.0" + "rev": "v1.167.0", + "sha256": "sha256-l2wCcYcAlKQTKkD+3yFi4zBkMVpq27Ygld1UjeD6IHM=", + "vendorSha256": "sha256-qZNYfSlUkCu7FudbKF4IOgK1xWM5LqUghclOeGOxYXg=", + "version": "1.167.0" }, "ansible": { "owner": "nbering", @@ -94,19 +94,19 @@ "owner": "AviatrixSystems", "provider-source-address": "registry.terraform.io/AviatrixSystems/aviatrix", "repo": "terraform-provider-aviatrix", - "rev": "v2.21.2", - "sha256": "sha256-crC/FKAahv1E7TiLf1XaP5ltrXPuudfki2BdggOW+v4=", + "rev": "v2.22.0", + "sha256": "sha256-ZJs9XtoftMihY9VwWw0lPxH2Nu6NmcEcchsRg71os0c=", "vendorSha256": null, - "version": "2.21.2" + "version": "2.22.0" }, "aws": { "owner": "hashicorp", "provider-source-address": "registry.terraform.io/hashicorp/aws", "repo": "terraform-provider-aws", - "rev": "v4.13.0", - "sha256": "sha256-KEu+7hKMWsrpS1WYxj3El7M43Chy9HTBjePhWO6bXMo=", - "vendorSha256": "sha256-Ez6uCriNm1OJ2EyMAyjXihzJ/Pzf2p/oAvJ3HN6fDnA=", - "version": "4.13.0" + "rev": "v4.14.0", + "sha256": "sha256-9xJVJw2kIutmmiKGvRBKS+/oyGSq0dipeCn2Gmtk1AU=", + "vendorSha256": "sha256-+YINrbj52ionuQbcgck6Dp2h88+LS5tXPmoVHXCAXOk=", + "version": "4.14.0" }, "azuread": { "owner": "hashicorp", @@ -121,10 +121,10 @@ "owner": "hashicorp", "provider-source-address": "registry.terraform.io/hashicorp/azurerm", "repo": "terraform-provider-azurerm", - "rev": "v3.5.0", - "sha256": "sha256-LF2Mqj/w1AtoYVGkZJsFpz81cfoUR80PURIsYoIYfsI=", + "rev": "v3.6.0", + "sha256": "sha256-brC9HZbyettgvwuFjrPxeRg/msQ1leD7F/h9aUxXAYo=", "vendorSha256": null, - "version": "3.5.0" + "version": "3.6.0" }, "azurestack": { "owner": "hashicorp", @@ -135,6 +135,15 @@ "vendorSha256": null, "version": "0.10.0" }, + "b2": { + "owner": "Backblaze", + "provider-source-address": "registry.terraform.io/Backblaze/b2", + "repo": "terraform-provider-b2", + "rev": "v0.8.0", + "sha256": "sha256-2yyAKrDO7X5yujfrHhYuvXbuKk3yY1sCXRZ8U/9OnrM=", + "vendorSha256": "sha256-f5bvk0p7AU1i/xeapxyVRXIUARju6mNQokejaDnT/GI=", + "version": "0.8.0" + }, "baiducloud": { "owner": "baidubce", "provider-source-address": "registry.terraform.io/baidubce/baiducloud", @@ -157,10 +166,10 @@ "owner": "DrFaust92", "provider-source-address": "registry.terraform.io/DrFaust92/bitbucket", "repo": "terraform-provider-bitbucket", - "rev": "v2.15.0", - "sha256": "sha256-m9LNW73CZHfOHX7qIn5Xm5JbMoV6ADGpxL9HNn8E+kA=", - "vendorSha256": "sha256-L8QYz1xgw8ZQjrU33uP18XxNUjImPYATZ02h46G4aXs=", - "version": "2.15.0" + "rev": "v2.17.0", + "sha256": "sha256-nzwfhwiszzhoobq2PlgtKfCch46fLoBVbembzdnkrD4=", + "vendorSha256": "sha256-LLhnF0/tj44vN36yss1JzNvDYy64Iuk5WVRhehf0wkk=", + "version": "2.17.0" }, "brightbox": { "owner": "brightbox", @@ -384,10 +393,10 @@ "owner": "fastly", "provider-source-address": "registry.terraform.io/fastly/fastly", "repo": "terraform-provider-fastly", - "rev": "v1.1.4", - "sha256": "sha256-sLVeVXVCvhSx51B4unYEOs0UpNsChF9guB22gpsratw=", + "rev": "v2.0.0", + "sha256": "sha256-sk146gyBgMWV+EJUrQuC6XY3rRCegezYLympPqqkI2s=", "vendorSha256": null, - "version": "1.1.4" + "version": "2.0.0" }, "flexibleengine": { "owner": "FlexibleEngineCloud", @@ -420,10 +429,10 @@ "owner": "integrations", "provider-source-address": "registry.terraform.io/integrations/github", "repo": "terraform-provider-github", - "rev": "v4.25.0-alpha", - "sha256": "sha256-9BE19VywtNIeDfjBKzle5nGFPmpS8lHV60w0h2xTztU=", + "rev": "v4.24.1", + "sha256": "sha256-1fwHMN2HIVl+8ZL7OtP1U5ORc41e7Tm3qEpMqIgWL20=", "vendorSha256": null, - "version": "4.25.0-alpha" + "version": "4.24.1" }, "gitlab": { "owner": "gitlabhq", @@ -512,10 +521,10 @@ "owner": "loafoe", "provider-source-address": "registry.terraform.io/loafoe/htpasswd", "repo": "terraform-provider-htpasswd", - "rev": "v1.0.2", - "sha256": "sha256-U8rArNTOmiB06Vrvet6PnkIuylRzswJvVptijvcuVFQ=", - "vendorSha256": "sha256-rotGWkaNbsU+9tGENvkNkR7C3d6334hfPNcvJaZDSKw=", - "version": "1.0.2" + "rev": "v1.0.3", + "sha256": "sha256-rh1AuD2azYj9bCFPFI9z/1cx6K/pHAEixUG1JXoyPEw=", + "vendorSha256": "sha256-FBWwgULCuNilfrGNMETJk7SSOIRFYGpD2L9ExeyFWqE=", + "version": "1.0.3" }, "http": { "owner": "hashicorp", @@ -530,10 +539,10 @@ "owner": "huaweicloud", "provider-source-address": "registry.terraform.io/huaweicloud/huaweicloud", "repo": "terraform-provider-huaweicloud", - "rev": "v1.35.2", - "sha256": "sha256-D1ZaYz+leYU2UNq9c589KVISSNdcjFnDO4JccSVRPYw=", + "rev": "v1.36.0", + "sha256": "sha256-bf/w6BxXOL/Fup8NmYi86tGK3HIYGaYWUSAZ0yUazb8=", "vendorSha256": null, - "version": "1.35.2" + "version": "1.36.0" }, "huaweicloudstack": { "owner": "huaweicloud", @@ -584,10 +593,10 @@ "owner": "Mongey", "provider-source-address": "registry.terraform.io/Mongey/kafka", "repo": "terraform-provider-kafka", - "rev": "v0.4.3", - "sha256": "sha256-6JPwj1BtKOICNIDf7k0gEjVAQAeOZ++f9wvX5aVgOjM=", - "vendorSha256": "sha256-Uw3QFtC1tYtx69vxH3NktTbaav8aLAUagagL0c2gjJ0=", - "version": "0.4.3" + "rev": "v0.5.0", + "sha256": "sha256-1SZkCuAmYlfzYVpS+qrNN+vl3zrFZGUgdrrgKj0VRUE=", + "vendorSha256": "sha256-6wccODr/eJUh5eeDGDCuuK2pCFmvPlXWmdAUnjBHJ5E=", + "version": "0.5.0" }, "kafka-connect": { "owner": "Mongey", @@ -602,10 +611,10 @@ "owner": "mrparkers", "provider-source-address": "registry.terraform.io/mrparkers/keycloak", "repo": "terraform-provider-keycloak", - "rev": "v3.8.0", - "sha256": "sha256-TVSP0oORtiVkPGjgiHHJAsaWDhlN5lnpC3eJ4Ogf2Ss=", + "rev": "v3.8.1", + "sha256": "sha256-++yoMIn6K4VwAGyRVe/MUjMU46gBeHjIRF2nrXktC7E=", "vendorSha256": "sha256-8x0MlwAzeA2O6wXXHSk++K0ePmzE9/2lfo2ID83LzRM=", - "version": "3.8.0" + "version": "3.8.1" }, "ksyun": { "owner": "kingsoftcloud", @@ -656,10 +665,10 @@ "owner": "linode", "provider-source-address": "registry.terraform.io/linode/linode", "repo": "terraform-provider-linode", - "rev": "v1.27.1", - "sha256": "sha256-rEXGKytKdlHO3RcZT+3e85cGfQ6b7mhdcFK+unw44ug=", + "rev": "v1.27.2", + "sha256": "sha256-Do9HOtgnSNnSUp3SSVwyzx9LPFSig/tO3GSigUrRcf4=", "vendorSha256": "sha256-ZJQAZk4TaKT+hLM46gtV1XmBCtwuKwtoom9tPGaOWhc=", - "version": "1.27.1" + "version": "1.27.2" }, "linuxbox": { "owner": "numtide", @@ -719,19 +728,19 @@ "owner": "equinix", "provider-source-address": "registry.terraform.io/equinix/metal", "repo": "terraform-provider-metal", - "rev": "v3.3.0-alpha.3", - "sha256": "sha256-wuZp0Be8a84y7JqpCGnBDPXgNG8JJcNWsIICP3ZjSVk=", - "vendorSha256": "sha256-Ln9EyycPduVuj+JefH9f+Q5KlNGvbcwcEDgaqH2M0So=", - "version": "3.3.0-alpha.3" + "rev": "v3.2.2", + "sha256": "193897farpyb3zxz6p79mfaf04ccin7xdirbkclqb3x3c56jy0xi", + "vendorSha256": null, + "version": "3.2.2" }, "minio": { "owner": "aminueza", "provider-source-address": "registry.terraform.io/aminueza/minio", "repo": "terraform-provider-minio", - "rev": "v1.5.1", - "sha256": "sha256-guSUdCBbfgwlrBW/592SqS7LSP7mB8cufrDC48K61Is=", - "vendorSha256": "sha256-Xp/Vl+z+hqElg/iCDBTtB6Xy2Ppk1oUAndVQM5hvlRg=", - "version": "1.5.1" + "rev": "v1.5.2", + "sha256": "sha256-QERV6Q/vYm1DWV91aYFCgZtFfnK9V2ATNsIAbuGzgdY=", + "vendorSha256": "sha256-SB7R466O3CbVwk6JSWXiFK4AD0rf6zijVfQW0rlEsVA=", + "version": "1.5.2" }, "mongodbatlas": { "owner": "mongodb", @@ -755,10 +764,10 @@ "owner": "NaverCloudPlatform", "provider-source-address": "registry.terraform.io/NaverCloudPlatform/ncloud", "repo": "terraform-provider-ncloud", - "rev": "v2.2.7", - "sha256": "sha256-5WZOZBFZkJtPdWmxznv/ML6d+UTr+qw+SbBuaG+bGS8=", + "rev": "v2.2.8", + "sha256": "sha256-G12/+tNSMEPCPCJH//MhRKJoRSex3mS7BZt0C2o0pF0=", "vendorSha256": "sha256-ovHg4GcbMzjEi+qJBpdqhR0YUakZCdnpc10SCu8FP8I=", - "version": "2.2.7" + "version": "2.2.8" }, "netlify": { "owner": "AegirHealth", @@ -773,10 +782,10 @@ "owner": "newrelic", "provider-source-address": "registry.terraform.io/newrelic/newrelic", "repo": "terraform-provider-newrelic", - "rev": "v2.44.0", - "sha256": "sha256-CR1GPm8K/9ZOFYvgKqMW63sbnRx0HyAYYESC/ZnBNYI=", - "vendorSha256": "sha256-2m5T6+GJTUDS345GDOW7Yf8X+JpxvtdYvInBjNvNXlg=", - "version": "2.44.0" + "rev": "v2.45.1", + "sha256": "sha256-KA4uvhK54JgzjAeIMvlLWQjul8ZZFbvmXyQTqOonxYY=", + "vendorSha256": "sha256-8nEbs5lDpXZ49QkIC1oRxZm+gVGx9xqDHe6jK8wWOA8=", + "version": "2.45.1" }, "nomad": { "owner": "hashicorp", @@ -800,10 +809,10 @@ "owner": "vmware", "provider-source-address": "registry.terraform.io/vmware/nsxt", "repo": "terraform-provider-nsxt", - "rev": "v3.2.6", - "sha256": "sha256-1uQMjzqMJ1NQVVCXy5aHrrZ4vDK5s1JqUnLyYf1qLVw=", + "rev": "v3.2.7", + "sha256": "sha256-Og/U9bmaZIN7b/JcMnNkt6c3/H+toe4dFYNaQYfxLPM=", "vendorSha256": null, - "version": "3.2.6" + "version": "3.2.7" }, "null": { "owner": "hashicorp", @@ -828,10 +837,10 @@ "owner": "oracle", "provider-source-address": "registry.terraform.io/oracle/oci", "repo": "terraform-provider-oci", - "rev": "v4.74.0", - "sha256": "sha256-hZpEhhI2pqOPLQm6XnVGIccyC1kVmLusUzF3KRbAHys=", + "rev": "v4.75.0", + "sha256": "sha256-tcDo7yvlobHf4+0BuPdifrkA8UPhI0txRCBgToTjIcw=", "vendorSha256": null, - "version": "4.74.0" + "version": "4.75.0" }, "okta": { "owner": "okta", @@ -927,10 +936,10 @@ "owner": "PaloAltoNetworks", "provider-source-address": "registry.terraform.io/PaloAltoNetworks/panos", "repo": "terraform-provider-panos", - "rev": "v1.10.0", - "sha256": "1nh1kc8pz10014p6dw8l2qdiqxdgcj5yy3da2qhbarwn0qm9fs36", + "rev": "v1.10.1", + "sha256": "sha256-acxObc7cgZgyxoCQusrkUzFC68cT3WhExiw2LscKoiQ=", "vendorSha256": null, - "version": "1.10.0" + "version": "1.10.1" }, "pass": { "owner": "camptocamp", @@ -999,10 +1008,10 @@ "owner": "scaleway", "provider-source-address": "registry.terraform.io/scaleway/scaleway", "repo": "terraform-provider-scaleway", - "rev": "v2.2.1-rc.3", - "sha256": "sha256-XprfY4Zy3PIrIJA2F1tnwafg4wYuzrm9nwVZULdX1D0=", - "vendorSha256": "sha256-H5KAo2rpgFGYmOgGOx9Z5LuApmftuYA6PfYCjnr7zC0=", - "version": "2.2.1-rc.3" + "rev": "v2.2.1", + "sha256": "sha256-a3tSxGTRYQeGfaJOR8z1Qd0SeuoiLwrEbdlw3B9gc2A=", + "vendorSha256": "sha256-D/pE1uEpkWIuICNJsuWVHfRNGPf73YliFxqODkl+4QY=", + "version": "2.2.1" }, "secret": { "owner": "numtide", @@ -1071,19 +1080,19 @@ "owner": "carlpett", "provider-source-address": "registry.terraform.io/carlpett/sops", "repo": "terraform-provider-sops", - "rev": "v0.7.0", - "sha256": "sha256-Nkqc4w6dHsNEVsvmJcxLa9X9/qHProaZyOIoAADX52M=", - "vendorSha256": "sha256-ZBH8lAHYMVWsjyHkx17gX+0NstoC6PjdSmzCoShuFYQ=", - "version": "0.7.0" + "rev": "v0.7.1", + "sha256": "sha256-6FuThi6iuuUGcMhswAk3Z6Lxth/2nuI57A02Xu2s+/U=", + "vendorSha256": "sha256-NO1r/EWLgH1Gogru+qPeZ4sW7FuDENxzNnpLSKstnE8=", + "version": "0.7.1" }, "spotinst": { "owner": "spotinst", "provider-source-address": "registry.terraform.io/spotinst/spotinst", "repo": "terraform-provider-spotinst", - "rev": "v1.73.2", - "sha256": "sha256-Q5DNFJ1g6jfHQVYF5Xf5Phx/4b2nbUvE651JNp/zgJg=", + "rev": "v1.73.3", + "sha256": "sha256-J7hswjjyWOZrsqnhMGAyXnvrVwLRY9jGIdtwN7Dympc=", "vendorSha256": "sha256-szdzI/42RExYQlHnm178RM3wlKOLax+nwgRVzonxXoI=", - "version": "1.73.2" + "version": "1.73.3" }, "stackpath": { "owner": "stackpath", @@ -1107,10 +1116,10 @@ "owner": "SumoLogic", "provider-source-address": "registry.terraform.io/SumoLogic/sumologic", "repo": "terraform-provider-sumologic", - "rev": "v2.14.0", - "sha256": "sha256-rLRU51l4cOBrC+HxVgtAay1L6VJt6qVgWUeYfJ9zSmE=", + "rev": "v2.15.0", + "sha256": "sha256-VAYU1v5uCIcbeLri6tG5RIAgDP4SzZxQDtK9P5gdSPc=", "vendorSha256": "sha256-7DGY+L41bJJrtLwdWgu2aMCefgcmtR6tmH12foi68Kc=", - "version": "2.14.0" + "version": "2.15.0" }, "template": { "owner": "hashicorp", @@ -1125,10 +1134,10 @@ "owner": "tencentcloudstack", "provider-source-address": "registry.terraform.io/tencentcloudstack/tencentcloud", "repo": "terraform-provider-tencentcloud", - "rev": "v1.72.1", - "sha256": "sha256-vCCIHp8tpAn7PIIBMVXRSI9G420E1ijfYow9bfC3RKs=", + "rev": "v1.72.3", + "sha256": "sha256-NfrLaKPIAMWeRNVdWEg4wn7pFoLO1Hv3HsxFKkVewPc=", "vendorSha256": null, - "version": "1.72.1" + "version": "1.72.3" }, "tfe": { "owner": "hashicorp", @@ -1189,10 +1198,10 @@ "owner": "ucloud", "provider-source-address": "registry.terraform.io/ucloud/ucloud", "repo": "terraform-provider-ucloud", - "rev": "v1.31.1", - "sha256": "sha256-xY8JXjKdi/TXpbZ1dQf9Sp8dbcHYn1cdqiszEK3evg0=", + "rev": "v1.31.3", + "sha256": "sha256-qVBvslXU5pPGMXwaBJ5f0iw4jNLgnnJ4Avr+mhC103Q=", "vendorSha256": null, - "version": "1.31.1" + "version": "1.31.3" }, "utils": { "owner": "cloudposse", @@ -1270,10 +1279,10 @@ "owner": "vultr", "provider-source-address": "registry.terraform.io/vultr/vultr", "repo": "terraform-provider-vultr", - "rev": "v2.10.1", - "sha256": "sha256-Q4qdPfBXnhkr+zUbMvBnBqCDT0cbHFT8oNMTM6cP0SM=", + "rev": "v2.11.0", + "sha256": "sha256-5TtrjWQ6AXYCjOi6Qe3oJVp011s87XyU2CYnXb7hFII=", "vendorSha256": null, - "version": "2.10.1" + "version": "2.11.0" }, "wavefront": { "owner": "vmware", diff --git a/pkgs/applications/networking/cluster/terraform-providers/update-provider b/pkgs/applications/networking/cluster/terraform-providers/update-provider index 4310fcdcc27..fb506cefbe0 100755 --- a/pkgs/applications/networking/cluster/terraform-providers/update-provider +++ b/pkgs/applications/networking/cluster/terraform-providers/update-provider @@ -128,9 +128,12 @@ version="$(jq -r '.version' <<<"${registry_response}")" if [[ ${old_version} == "${version}" && ${force} != 1 && -z ${vendorSha256} && ${old_vendor_sha256} != "${vendorSha256}" ]]; then echo_provider "already at version ${version}" exit -else - echo_provider "updating from ${old_version} to ${version}" fi +if [[ ${version} =~ (alpha|beta|pre) && ${force} != 1 ]]; then + echo_provider "not updating to unstable version ${version}" + exit +fi +echo_provider "updating from ${old_version} to ${version}" update_attr version "${version}" provider_source_url="$(jq -r '.source' <<<"${registry_response}")" diff --git a/pkgs/applications/networking/cluster/terraform/default.nix b/pkgs/applications/networking/cluster/terraform/default.nix index b4191bbd78c..399f20fd5c1 100644 --- a/pkgs/applications/networking/cluster/terraform/default.nix +++ b/pkgs/applications/networking/cluster/terraform/default.nix @@ -63,10 +63,11 @@ let kalbasit marsam maxeaubrey - techknowlogick timstott + zimbatm zowoq - ] ++ teams.numtide.members; + techknowlogick + ]; }; } // attrs'); @@ -191,9 +192,9 @@ rec { }; terraform_1 = mkTerraform { - version = "1.1.9"; - sha256 = "sha256-6dyP3Y5cK+/qLoC2QPZW3QNgqOeVXegC06Pa7pSv1iE="; - vendorSha256 = "sha256-YI/KeoOIxgCAS3Q6SXaW8my0PyFD+pyksshQEAknsz4="; + version = "1.2.0"; + sha256 = "sha256-5um+zS7MVL59SlxchjXdlhBGNdacbQgvg7BRAWnW5XU="; + vendorSha256 = "sha256-6x1cv+DKXH2yyMjIA6JY5EkTmWbwH4LBammXKtw2EZo="; patches = [ ./provider-path-0_15.patch ]; passthru = { inherit plugins; }; }; diff --git a/pkgs/applications/networking/cluster/tilt/default.nix b/pkgs/applications/networking/cluster/tilt/default.nix index c13c08c44a4..7aaf5b8bc75 100644 --- a/pkgs/applications/networking/cluster/tilt/default.nix +++ b/pkgs/applications/networking/cluster/tilt/default.nix @@ -1,17 +1,17 @@ -{ lib, buildGoModule, fetchFromGitHub }: +{ stdenv, lib, buildGoModule, fetchFromGitHub }: buildGoModule rec { pname = "tilt"; /* Do not use "dev" as a version. If you do, Tilt will consider itself running in development environment and try to serve assets from the source tree, which is not there once build completes. */ - version = "0.26.3"; + version = "0.30.0"; src = fetchFromGitHub { owner = "tilt-dev"; repo = pname; rev = "v${version}"; - sha256 = "sha256-jrVf6vNlEkTgALS93o3kIiticvsyFHm5oA2Fh1edAGY="; + sha256 = "sha256-bZYm9T3NRNNtT8RDGwnXcXC7Rb/GuIxI/U06By4gR/w="; }; vendorSha256 = null; @@ -24,5 +24,13 @@ buildGoModule rec { homepage = "https://tilt.dev/"; license = licenses.asl20; maintainers = with maintainers; [ anton-dessiatov ]; + + # TODO: Remove once nixpkgs uses macOS SDK 10.14+ for x86_64-darwin + # Undefined symbols for architecture x86_64: + # "_SecTrustEvaluateWithError", referenced from: + # _crypto/x509/internal/macos.x509_SecTrustEvaluateWithError_trampoline.abi0 in go.o + # "_utimensat", referenced from: + # _syscall.libc_utimensat_trampoline.abi0 in go.o + broken = stdenv.isDarwin && stdenv.isx86_64; }; } diff --git a/pkgs/applications/networking/cluster/waypoint/default.nix b/pkgs/applications/networking/cluster/waypoint/default.nix index df0ae08eede..038ab2c2bf7 100644 --- a/pkgs/applications/networking/cluster/waypoint/default.nix +++ b/pkgs/applications/networking/cluster/waypoint/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "waypoint"; - version = "0.8.1"; + version = "0.8.2"; src = fetchFromGitHub { owner = "hashicorp"; repo = pname; rev = "v${version}"; - sha256 = "sha256-NRR/N61QdBF4jaioF7+X3xOdvaJ8COEzXL4hVHYSqW4="; + sha256 = "sha256-Pq1gGXROPHHMaOoQwx6cObvMF+SoilOROR4bwI0Y/GM="; }; - vendorSha256 = "sha256-57/MzO5TulGKMkGdQRoFNKIKF7upJiPazF0+Ovt/LG8="; + vendorSha256 = "sha256-Q8ookgQwecRuSrnQiIREBMDxK9NAWfHu+sIQeMO/T4w="; nativeBuildInputs = [ go-bindata installShellFiles ]; diff --git a/pkgs/applications/networking/flexget/default.nix b/pkgs/applications/networking/flexget/default.nix index d74378378b9..b50c05fd180 100644 --- a/pkgs/applications/networking/flexget/default.nix +++ b/pkgs/applications/networking/flexget/default.nix @@ -5,14 +5,14 @@ python3Packages.buildPythonApplication rec { pname = "flexget"; - version = "3.3.9"; + version = "3.3.10"; # Fetch from GitHub in order to use `requirements.in` src = fetchFromGitHub { owner = "flexget"; repo = "flexget"; rev = "refs/tags/v${version}"; - hash = "sha256-29V22B1Nkgj/qc6uyAOSOZ1rrjjtf75I9Eycu8I5ysQ="; + hash = "sha256-ESUkGHUVToM5rxpEa0zMo/LxWfPgovkNqDU5IAqQBZg="; }; postPatch = '' diff --git a/pkgs/applications/networking/instant-messengers/caprine-bin/build-from-appimage.nix b/pkgs/applications/networking/instant-messengers/caprine-bin/build-from-appimage.nix index aa0a8f7bfc4..d08e1cd1ba4 100644 --- a/pkgs/applications/networking/instant-messengers/caprine-bin/build-from-appimage.nix +++ b/pkgs/applications/networking/instant-messengers/caprine-bin/build-from-appimage.nix @@ -1,8 +1,6 @@ { lib , fetchurl , appimageTools -, gtk3 -, gsettings-desktop-schemas , xorg , pname , version @@ -24,7 +22,6 @@ in profile = '' export LC_ALL=C.UTF-8 - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS ''; extraPkgs = pkgs: appimageTools.defaultFhsEnvArgs.multiPkgs pkgs; diff --git a/pkgs/applications/networking/instant-messengers/cinny/default.nix b/pkgs/applications/networking/instant-messengers/cinny/default.nix index 480bba6fde1..d27512bf5bc 100644 --- a/pkgs/applications/networking/instant-messengers/cinny/default.nix +++ b/pkgs/applications/networking/instant-messengers/cinny/default.nix @@ -4,11 +4,11 @@ let configOverrides = writeText "cinny-config-overrides.json" (builtins.toJSON conf); in stdenv.mkDerivation rec { pname = "cinny"; - version = "2.0.0"; + version = "2.0.3"; src = fetchurl { url = "https://github.com/ajbura/cinny/releases/download/v${version}/cinny-v${version}.tar.gz"; - sha256 = "sha256-tM3YA0GW8Z24gt8t9dOyr10GCINodAB0b4/gD7jfgOM="; + sha256 = "13jg28dypp7x6wgsc6vikbqnagp1grqsdmmwhll8qz9ih9rq9fxd"; }; installPhase = '' diff --git a/pkgs/applications/networking/instant-messengers/deltachat-cursed/default.nix b/pkgs/applications/networking/instant-messengers/deltachat-cursed/default.nix index 442a6adcb79..0b692104a4f 100644 --- a/pkgs/applications/networking/instant-messengers/deltachat-cursed/default.nix +++ b/pkgs/applications/networking/instant-messengers/deltachat-cursed/default.nix @@ -1,9 +1,6 @@ { lib , python3 , fetchFromGitHub -, wrapGAppsHook -, gobject-introspection -, libnotify }: python3.pkgs.buildPythonApplication rec { @@ -19,29 +16,16 @@ python3.pkgs.buildPythonApplication rec { nativeBuildInputs = [ python3.pkgs.setuptools-scm - wrapGAppsHook ]; SETUPTOOLS_SCM_PRETEND_VERSION = version; - buildInputs = [ - gobject-introspection - libnotify - ]; - propagatedBuildInputs = with python3.pkgs; [ deltachat notify-py - pygobject3 urwid-readline ]; - dontWrapGApps = true; - - preFixup = '' - makeWrapperArgs+=("''${gappsWrapperArgs[@]}") - ''; - doCheck = false; # no tests implemented meta = with lib; { diff --git a/pkgs/applications/networking/instant-messengers/rambox/rambox.nix b/pkgs/applications/networking/instant-messengers/rambox/rambox.nix index d4329ed09d3..b9b5175d3b8 100644 --- a/pkgs/applications/networking/instant-messengers/rambox/rambox.nix +++ b/pkgs/applications/networking/instant-messengers/rambox/rambox.nix @@ -1,6 +1,6 @@ { pname, version, src, meta, desktopName ? "Rambox" }: -{ appimageTools, lib, fetchurl, gsettings-desktop-schemas, gtk3, makeDesktopItem }: +{ appimageTools, lib, fetchurl, makeDesktopItem }: let name = "${pname}-${version}"; @@ -18,9 +18,6 @@ let }; in appimageTools.wrapType2 rec { inherit name src meta; - profile = '' - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS - ''; extraInstallCommands = '' mkdir -p $out/share/applications $out/share/icons/hicolor/256x256/apps diff --git a/pkgs/applications/networking/instant-messengers/schildichat/pin.json b/pkgs/applications/networking/instant-messengers/schildichat/pin.json index d227dc4b0fb..ef981716ef1 100644 --- a/pkgs/applications/networking/instant-messengers/schildichat/pin.json +++ b/pkgs/applications/networking/instant-messengers/schildichat/pin.json @@ -1,9 +1,9 @@ { - "version": "1.10.4-sc.1", - "rev": "v1.10.4-sc.1", - "srcHash": "0sxibzskbw9pa6wmbk1y3n7p74cfj9zvm2hsw76sp6wfac1wnbwl", - "webYarnHash": "1z8xr35gh74y2iv9kfk6d6b6f3iclcrpkdds5q7rh2irpf14fwpw", - "jsSdkYarnHash": "1cwvb0hwq19dh2937fmcbfvnkkfmalk9wrxf1yv81nsbyjnx86di", - "reactSdkYarnHash": "0j4rxg11q35idfzvjrpmyrwkz9yqgzpwps3xqx1k4qcs844jjs9f", - "desktopYarnHash": "0akmgib212gkygvs2snn9c43k3ika3ipg85d480j3hqyb6yxwqmn" + "version": "1.10.12-sc.1", + "rev": "v1.10.12-sc.1", + "srcHash": "1rpfax6xx731w59a2i7v6jr17l3rnrn79d666f0cjchg36nkqqg9", + "webYarnHash": "0m5dnz3m68iz94siwmavzj50wxd6w6wanjsm1zhq76lgymgcbqc2", + "jsSdkYarnHash": "1k1jvavbqr7vcbdaxc6yqiq5254kxhywn1s2zndrfny7ap8z5c1c", + "reactSdkYarnHash": "0cz7pgrbysljmhpf4m0wqwqjqijxahl3wz5qhczlkj46dvq6qyxb", + "desktopYarnHash": "09ri87ynfgxrv22sykggiy6nlcf20qwj7zj9qq0rz3c2acr6g9mn" } diff --git a/pkgs/applications/networking/instant-messengers/schildichat/schildichat-web.nix b/pkgs/applications/networking/instant-messengers/schildichat/schildichat-web.nix index a7ad6fb4d9b..7041a19684c 100644 --- a/pkgs/applications/networking/instant-messengers/schildichat/schildichat-web.nix +++ b/pkgs/applications/networking/instant-messengers/schildichat/schildichat-web.nix @@ -78,13 +78,8 @@ in stdenv.mkDerivation rec { buildPhase = '' runHook preBuild - pushd matrix-react-sdk - ../element-web/node_modules/.bin/reskindex -h ../element-web/src/header - popd - pushd element-web node scripts/copy-res.js - node_modules/.bin/reskindex -h ../element-web/src/header node_modules/.bin/webpack --progress --mode production popd diff --git a/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix b/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix index 96c6809b045..d63c87ee5da 100644 --- a/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix @@ -24,7 +24,7 @@ let in stdenv.mkDerivation rec { pname = "signal-desktop"; - version = "5.42.0"; # Please backport all updates to the stable channel. + version = "5.43.0"; # Please backport all updates to the stable channel. # All releases have a limited lifetime and "expire" 90 days after the release. # When releases "expire" the application becomes unusable until an update is # applied. The expiration date for the current release can be extracted with: @@ -34,7 +34,7 @@ in stdenv.mkDerivation rec { src = fetchurl { url = "https://updates.signal.org/desktop/apt/pool/main/s/signal-desktop/signal-desktop_${version}_amd64.deb"; - sha256 = "sha256-xjSj7eKaDV8WB0SiPb4orxKK8mV2a2EWiMBK7BE8mgU="; + sha256 = "sha256-DYJ3WZbaalKhQXhVQO3qhJiGj92Cc+pwRDx/YBIi6gg="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/networking/instant-messengers/signalbackup-tools/default.nix b/pkgs/applications/networking/instant-messengers/signalbackup-tools/default.nix index f81b8853c8b..1070821f5d2 100644 --- a/pkgs/applications/networking/instant-messengers/signalbackup-tools/default.nix +++ b/pkgs/applications/networking/instant-messengers/signalbackup-tools/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "signalbackup-tools"; - version = "20220430"; + version = "20220517"; src = fetchFromGitHub { owner = "bepaald"; repo = pname; rev = version; - sha256 = "sha256-clG0B7PgtlpsSnZgglkv7y7SOtMTBvwJMnvMrcTWXdI="; + sha256 = "sha256-6jKsdilgWm6oDAuzE1aToMg9oV9BmTgQrOvvlwPA5gc="; }; # Remove when Apple SDK is >= 10.13 diff --git a/pkgs/applications/networking/instant-messengers/signald/0001-Fetch-buildconfig-during-gradle-build-inside-Nix-FOD.patch b/pkgs/applications/networking/instant-messengers/signald/0001-Fetch-buildconfig-during-gradle-build-inside-Nix-FOD.patch index e23aded6d0e..9e1578e6f1a 100644 --- a/pkgs/applications/networking/instant-messengers/signald/0001-Fetch-buildconfig-during-gradle-build-inside-Nix-FOD.patch +++ b/pkgs/applications/networking/instant-messengers/signald/0001-Fetch-buildconfig-during-gradle-build-inside-Nix-FOD.patch @@ -1,17 +1,17 @@ -From 232c692240b9c52b95bd38ba7aecb11e7077cf31 Mon Sep 17 00:00:00 2001 +From 8ed5f3c9117e08f7c2e4e1e01c2eee501675049b Mon Sep 17 00:00:00 2001 From: Maximilian Bosch <maximilian@mbosch.me> Date: Sat, 26 Feb 2022 12:33:13 +0100 Subject: [PATCH] Fetch buildconfig during gradle build inside Nix FOD --- - build.gradle | 5 +++++ - 1 file changed, 5 insertions(+) + build.gradle | 7 ++++++- + 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/build.gradle b/build.gradle -index cbb587f..3b06e80 100644 +index eaa6e0e..63c2947 100644 --- a/build.gradle +++ b/build.gradle -@@ -82,6 +82,9 @@ static String getVersion() { +@@ -83,6 +83,9 @@ static String getVersion() { repositories { maven {url "https://gitlab.com/api/v4/groups/6853927/-/packages/maven"} // https://gitlab.com/groups/signald/-/packages @@ -21,15 +21,22 @@ index cbb587f..3b06e80 100644 mavenCentral() } -@@ -102,6 +105,8 @@ dependencies { - implementation 'io.prometheus:simpleclient_httpserver:0.14.1' +@@ -104,6 +107,8 @@ dependencies { + implementation 'io.prometheus:simpleclient_httpserver:0.15.0' implementation 'com.squareup.okhttp3:logging-interceptor:4.9.3' - implementation 'io.sentry:sentry:5.6.1' + implementation 'io.sentry:sentry:5.7.3' + implementation 'com.github.gmazzo.buildconfig:com.github.gmazzo.buildconfig.gradle.plugin:3.0.3' + implementation 'org.jetbrains.kotlin:kotlin-scripting-jvm:1.4.31' testImplementation 'org.junit.jupiter:junit-jupiter:5.8.2' } +@@ -171,4 +176,4 @@ allprojects { + runtime { + options = ['--strip-java-debug-attributes', '--compress', '2', '--no-header-files', '--no-man-pages'] + modules = ['java.base', 'java.management', 'java.naming', 'java.sql', 'java.xml', 'jdk.crypto.ec', 'jdk.httpserver', 'java.desktop', 'jdk.unsupported'] +-} +\ No newline at end of file ++} -- -2.33.1 +2.36.0 diff --git a/pkgs/applications/networking/instant-messengers/signald/0002-buildconfig-local-deps-fixes.patch b/pkgs/applications/networking/instant-messengers/signald/0002-buildconfig-local-deps-fixes.patch index c5931238fe5..a6efeb4a44f 100644 --- a/pkgs/applications/networking/instant-messengers/signald/0002-buildconfig-local-deps-fixes.patch +++ b/pkgs/applications/networking/instant-messengers/signald/0002-buildconfig-local-deps-fixes.patch @@ -1,19 +1,19 @@ -From 80277ce9e24d9efa8dfd6eb775187c823e0e528e Mon Sep 17 00:00:00 2001 +From f319e1db47ae1eeddb6021cafe7b4f8551a702d7 Mon Sep 17 00:00:00 2001 From: Maximilian Bosch <maximilian@mbosch.me> Date: Sat, 26 Feb 2022 12:36:15 +0100 Subject: [PATCH 2/2] buildconfig/local deps fixes --- - build.gradle | 20 ++++++++++++++++++-- - 1 file changed, 18 insertions(+), 2 deletions(-) + build.gradle | 26 ++++++++++++++++++-------- + 1 file changed, 18 insertions(+), 8 deletions(-) diff --git a/build.gradle b/build.gradle -index cbb587f..ad836cf 100644 +index eaa6e0e..9a2f4e2 100644 --- a/build.gradle +++ b/build.gradle -@@ -9,10 +9,21 @@ import org.gradle.nativeplatform.platform.internal.ArchitectureInternal - import org.gradle.nativeplatform.platform.internal.OperatingSystemInternal +@@ -10,11 +10,21 @@ import org.gradle.nativeplatform.platform.internal.ArchitectureInternal import org.gradle.nativeplatform.platform.internal.DefaultNativePlatform + import org.gradle.nativeplatform.platform.internal.OperatingSystemInternal +buildscript { + repositories { @@ -28,13 +28,14 @@ index cbb587f..ad836cf 100644 + plugins { - id 'com.github.gmazzo.buildconfig' version '3.0.3' +- id 'org.beryx.runtime' version '1.12.7' id 'application' } +apply plugin: "com.github.gmazzo.buildconfig" compileJava.options.encoding = 'UTF-8' -@@ -82,7 +93,10 @@ static String getVersion() { +@@ -83,7 +93,10 @@ static String getVersion() { repositories { maven {url "https://gitlab.com/api/v4/groups/6853927/-/packages/maven"} // https://gitlab.com/groups/signald/-/packages @@ -46,15 +47,25 @@ index cbb587f..ad836cf 100644 } dependencies { -@@ -102,6 +116,8 @@ dependencies { - implementation 'io.prometheus:simpleclient_httpserver:0.14.1' +@@ -104,6 +117,8 @@ dependencies { + implementation 'io.prometheus:simpleclient_httpserver:0.15.0' implementation 'com.squareup.okhttp3:logging-interceptor:4.9.3' - implementation 'io.sentry:sentry:5.6.1' + implementation 'io.sentry:sentry:5.7.3' + implementation 'com.github.gmazzo.buildconfig:com.github.gmazzo.buildconfig.gradle.plugin:3.0.3' + implementation 'org.jetbrains.kotlin:kotlin-scripting-jvm:1.4.31' testImplementation 'org.junit.jupiter:junit-jupiter:5.8.2' } +@@ -167,8 +182,3 @@ allprojects { + } + } + } +- +-runtime { +- options = ['--strip-java-debug-attributes', '--compress', '2', '--no-header-files', '--no-man-pages'] +- modules = ['java.base', 'java.management', 'java.naming', 'java.sql', 'java.xml', 'jdk.crypto.ec', 'jdk.httpserver', 'java.desktop', 'jdk.unsupported'] +-} +\ No newline at end of file -- -2.33.1 +2.36.0 diff --git a/pkgs/applications/networking/instant-messengers/signald/default.nix b/pkgs/applications/networking/instant-messengers/signald/default.nix index 3f84c156f82..e60a683a491 100644 --- a/pkgs/applications/networking/instant-messengers/signald/default.nix +++ b/pkgs/applications/networking/instant-messengers/signald/default.nix @@ -1,16 +1,35 @@ { lib, stdenv, fetchurl, fetchFromGitLab, jdk17_headless, coreutils, gradle_6, git, perl -, makeWrapper, fetchpatch, substituteAll +, makeWrapper, fetchpatch, substituteAll, jre_minimal }: let pname = "signald"; - version = "0.17.0"; + version = "0.18.5"; src = fetchFromGitLab { owner = pname; repo = pname; rev = version; - sha256 = "sha256-eN6lEs6PuRczbzQZmGlNf6Ahp4FbWpA3EArlATEiZHU="; + sha256 = "sha256-2cb1pyBOoOlFqJsNKXA0Q9x4wCE4yzzcfrDDtTp7HMk="; + }; + + jre' = jre_minimal.override { + jdk = jdk17_headless; + # from https://gitlab.com/signald/signald/-/blob/0.18.5/build.gradle#L173 + modules = [ + "java.base" + "java.management" + "java.naming" + "java.sql" + "java.xml" + "jdk.crypto.ec" + "jdk.httpserver" + + # for java/beans/PropertyChangeEvent + "java.desktop" + # for sun/misc/Unsafe + "jdk.unsupported" + ]; }; # fake build to pre-download deps into fixed-output derivation @@ -35,8 +54,8 @@ let outputHashMode = "recursive"; # Downloaded jars differ by platform outputHash = { - x86_64-linux = "sha256-kZ25p+lIkOqNoFFBgJRYFcvKJenKICVa1PasaaEHmRA="; - aarch64-linux = "sha256-CbFNigp3R7ETX0uXv6PNuhDpmPc4sowbWmwZ+5txXQs="; + x86_64-linux = "sha256-q1gzauIL7aKalvPSfiK5IvkNkidCh+6jp5bpwxR+PZ0="; + aarch64-linux = "sha256-cM+7MaV0/4yAzobXX9FSdl/ZfLddwySayao96UdDgzk="; }.${stdenv.system} or (throw "Unsupported platform"); }; @@ -67,7 +86,7 @@ in stdenv.mkDerivation rec { tar xvf ./build/distributions/signald.tar --strip-components=1 --directory $out/ wrapProgram $out/bin/signald \ --prefix PATH : ${lib.makeBinPath [ coreutils ]} \ - --set JAVA_HOME "${jdk17_headless}" + --set JAVA_HOME "${jre'}" runHook postInstall ''; diff --git a/pkgs/applications/networking/instant-messengers/zoom-us/default.nix b/pkgs/applications/networking/instant-messengers/zoom-us/default.nix index db38a2d0e86..1b15c2aa0cc 100644 --- a/pkgs/applications/networking/instant-messengers/zoom-us/default.nix +++ b/pkgs/applications/networking/instant-messengers/zoom-us/default.nix @@ -7,18 +7,27 @@ # Dynamic libraries , alsa-lib , atk +, at-spi2-atk +, at-spi2-core , cairo +, cups , dbus +, expat +, libdrm , libGL , fontconfig , freetype , gtk3 , gdk-pixbuf , glib +, mesa +, nspr +, nss , pango , wayland , xorg , libxkbcommon +, udev , zlib # Runtime , coreutils @@ -33,13 +42,11 @@ let inherit (stdenv.hostPlatform) system; throwSystem = throw "Unsupported system: ${system}"; - # Zoom versions are released at different times for each platform and linux - # is stuck on 5.9.6 until https://github.com/NixOS/nixpkgs/pull/166085 is - # resolved + # Zoom versions are released at different times for each platform version = { aarch64-darwin = "5.10.4.6592"; x86_64-darwin = "5.10.4.6592"; - x86_64-linux = "5.9.6.2225"; + x86_64-linux = "5.10.4.2845"; }.${system} or throwSystem; srcs = { @@ -53,7 +60,7 @@ let }; x86_64-linux = fetchurl { url = "https://zoom.us/client/${version}/zoom_x86_64.pkg.tar.xz"; - sha256 = "0rynpw2fjn9j75f34rk0rgqn9wzyzgzmwh1a3xcx7hqingv45k53"; + sha256 = "9gspydrGaEjzAM0nK1u0XNm07HTupJ2wnPxCFWy+Nts="; }; }; @@ -61,28 +68,40 @@ let # $ LD_LIBRARY_PATH=$NIX_LD_LIBRARY_PATH:$PWD ldd zoom | grep 'not found' alsa-lib atk + at-spi2-atk + at-spi2-core cairo + cups dbus + expat + libdrm libGL fontconfig freetype gtk3 gdk-pixbuf glib + mesa + nspr + nss pango stdenv.cc.cc wayland xorg.libX11 xorg.libxcb xorg.libXcomposite + xorg.libXdamage xorg.libXext libxkbcommon + xorg.libXrandr xorg.libXrender - zlib + xorg.libxshmfence xorg.xcbutilimage xorg.xcbutilkeysyms xorg.libXfixes xorg.libXtst + udev + zlib ] ++ lib.optional (pulseaudioSupport) libpulseaudio); in @@ -134,7 +153,9 @@ stdenv.mkDerivation rec { done # ZoomLauncher sets LD_LIBRARY_PATH before execing zoom - wrapProgram $out/opt/zoom/zoom \ + # IPC breaks if the executable name does not end in 'zoom' + mv $out/opt/zoom/zoom $out/opt/zoom/.zoom + makeWrapper $out/opt/zoom/.zoom $out/opt/zoom/zoom \ --prefix LD_LIBRARY_PATH ":" ${libs} rm $out/bin/zoom diff --git a/pkgs/applications/networking/irc/senpai/default.nix b/pkgs/applications/networking/irc/senpai/default.nix index 0d5f6bfbfa8..d12ee05d4e2 100644 --- a/pkgs/applications/networking/irc/senpai/default.nix +++ b/pkgs/applications/networking/irc/senpai/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "senpai"; - version = "unstable-2022-04-29"; + version = "unstable-2022-05-10"; src = fetchFromSourcehut { owner = "~taiite"; repo = "senpai"; - rev = "859b8fdb7d433a848668c6f1a00406f107fe00e5"; - sha256 = "sha256-grVv/bcUEU6Aaf+4MbkocY/75u7q6Q7r26xK0ybULUg="; + rev = "7a9fe74fdfb3f334b97434df0aa74b2b32e3582e"; + sha256 = "sha256-uagdJG+YVryzsaZfkg5W2F8mQSc1bpflL77tqMHp1Ck="; }; vendorSha256 = "sha256-hgojB1D0/SZWLEzJ48EBoT/InYYmqD/1qoTknfk/aTo="; diff --git a/pkgs/applications/networking/mailreaders/mutt/default.nix b/pkgs/applications/networking/mailreaders/mutt/default.nix index 5af97fa0f93..c5ba0437efd 100644 --- a/pkgs/applications/networking/mailreaders/mutt/default.nix +++ b/pkgs/applications/networking/mailreaders/mutt/default.nix @@ -28,6 +28,7 @@ with lib; stdenv.mkDerivation rec { pname = "mutt"; version = "2.2.4"; + outputs = [ "out" "doc" "info" ]; src = fetchurl { url = "http://ftp.mutt.org/pub/mutt/${pname}-${version}.tar.gz"; diff --git a/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix b/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix index 4705eab1293..e400592733a 100644 --- a/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix +++ b/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix @@ -1,655 +1,655 @@ { - 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{ url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/lt/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/lt/thunderbird-91.9.1.tar.bz2"; locale = "lt"; arch = "linux-i686"; - sha256 = "7ece24971b0a7b901ab165ff30c3b5239161a488be02c7f5cf5d6a2dfc6dce3e"; + sha256 = "c09b1b265f0c214eaaa864e09584c8b18270b3e1c22101dfaaf8ff0bca930f04"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/lv/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/lv/thunderbird-91.9.1.tar.bz2"; locale = "lv"; arch = "linux-i686"; - sha256 = "baf96d476ec159bbc4567e4beae29d3c61fef9683190cdc7c207163ed67797fb"; + sha256 = "7579ec4f5a58f716bc94eb3333672350361d1a3ac11e2434eb7a2026f13d90e5"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/ms/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/ms/thunderbird-91.9.1.tar.bz2"; locale = "ms"; arch = "linux-i686"; - sha256 = "3b356c61079130bd3d5b5023116f74961ed84595222284fadc45f3224281bbfc"; + sha256 = "e5dc0ae6d2d0c99a14fa811030b11b90b5b53b6b9b329d6d642d5c4ab18e550a"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/nb-NO/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/nb-NO/thunderbird-91.9.1.tar.bz2"; locale = "nb-NO"; arch = "linux-i686"; - sha256 = "225a885cc788b64c864efab9cb0adbb0399a7e68e747551bb98cfba903898bec"; + sha256 = "dc4838ccdfe5c59ac7438fbeea01ff675801b14c216c6f1342206f7826bfa846"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/nl/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/nl/thunderbird-91.9.1.tar.bz2"; locale = "nl"; arch = "linux-i686"; - sha256 = "1c75e3df164a37c46f83421e0df28dd1cd4fd9e725a4e6c8d03378c800c53f04"; + sha256 = "d82604da582c5d3980eda14c488575810ccf20713024e0e0845dbf224cc6e61b"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/nn-NO/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/nn-NO/thunderbird-91.9.1.tar.bz2"; locale = "nn-NO"; arch = "linux-i686"; - sha256 = "fc154d52fa4e19ef4e727663a1bc4599da9e7c3aba0e563d823a3d4995d2632e"; + sha256 = "d47e71a9c2ee42d9f379aa44100a403d89929c1b668a286aa189a5a087898f58"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/pa-IN/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/pa-IN/thunderbird-91.9.1.tar.bz2"; locale = "pa-IN"; arch = "linux-i686"; - sha256 = "27a95c486a5a075fa8011add5c06c616ffafa7cb266afc26f7511cd510f8f403"; + sha256 = "5aa634d92d4937f628e50ab796ffb65123db63b2392918481eb8a63d14ca5bc5"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/pl/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/pl/thunderbird-91.9.1.tar.bz2"; locale = "pl"; arch = "linux-i686"; - sha256 = "34563d04912e27e93f122c47eca56a368f2b723406498f98f312f92459265f87"; + sha256 = "56b80fc669ed97371706a1eb13e151362f0b312df531d9832835fb12611e9310"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/pt-BR/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/pt-BR/thunderbird-91.9.1.tar.bz2"; locale = "pt-BR"; arch = "linux-i686"; - sha256 = "6ab98477ca80c945c4b780aa704b231e7831fd2334a70c57937b2815357f3150"; + sha256 = "801d998fc5544c1cdf68b5b7269638dcd8cf0a7c2d4c8e9fc2cd5f78fa19a9b1"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/pt-PT/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/pt-PT/thunderbird-91.9.1.tar.bz2"; locale = "pt-PT"; arch = "linux-i686"; - sha256 = "0919ca9a0125a8545de083f629a4f338e8db0f0e7a87bb7c55172f163605f8d1"; + sha256 = "35839a406cb8656ed4625f74e9711419ac91c76952975892fab99b8d175dd768"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/rm/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/rm/thunderbird-91.9.1.tar.bz2"; locale = "rm"; arch = "linux-i686"; - sha256 = "31d4de40f1ad6c284e388ffd760d3758174ce99c01ca23b0ccbf9d1a4f343bab"; + sha256 = "86fc3237284821f4f9ca16b7d8aeca3b843b5c9269e42422dd451e39cec6ceef"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/ro/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/ro/thunderbird-91.9.1.tar.bz2"; locale = "ro"; arch = "linux-i686"; - sha256 = "3e0a763faa79aa775e29907e018f81d506fbaa025d9900516447c6081e6c31b1"; + sha256 = "ad3dcceec9d00c964b6b5529eb049c8130fdc8c945eced774e6cbf49c6cd2702"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/ru/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/ru/thunderbird-91.9.1.tar.bz2"; locale = "ru"; arch = "linux-i686"; - sha256 = "ee485a4f7287d770107d9d41d678ace5873079e1fdc726a30800b6d055f68267"; + sha256 = "21d61b1b417263236134a8c666103dd1a0dbcf9db23af2ca0fede2710541fc30"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/sk/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/sk/thunderbird-91.9.1.tar.bz2"; locale = "sk"; arch = "linux-i686"; - sha256 = "e8cc9b1a9e767ab548de614da8feb1b42213444e91e4a1382b2cdc7323872215"; + sha256 = "c0c9ce86af798fa0693a382b9df0c3b5d9067c917af16afc46c7e85ee8e96a24"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/sl/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/sl/thunderbird-91.9.1.tar.bz2"; locale = "sl"; arch = "linux-i686"; - sha256 = "271b3fa48e9f1cedfe3fbfbd72fd23b0b477e9993108996dbc897835de0750c9"; + sha256 = "df974a11f9b1cbcec5252443c53cc653080b1ed5dec80e76461585ee355302de"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/sq/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/sq/thunderbird-91.9.1.tar.bz2"; locale = "sq"; arch = "linux-i686"; - sha256 = "7fac9e56f3e5070f0b9e038483f0b0fb97a42d947410c3f8677b7e6d8ebf3828"; + sha256 = "9c837fec2ad71217761eaa90ab009230eb32a45f8e7eda46a98df57dc623e4f8"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/sr/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/sr/thunderbird-91.9.1.tar.bz2"; locale = "sr"; arch = "linux-i686"; - sha256 = "903c9408c4bce12a78cf5941b9413f65d946b49c5c6819c1cc1c7006373d6802"; + sha256 = "9c952da9ffed908873231c34048eac64f1213cbf7ba322da7cff3dddc33d8859"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/sv-SE/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/sv-SE/thunderbird-91.9.1.tar.bz2"; locale = "sv-SE"; arch = "linux-i686"; - sha256 = "c6ff664cd1d80bd36f1bbcffa239f3f8d7b31e5b68918001b1a26bd91ea49376"; + sha256 = "3ebdbe94b678e306e84967d6ab627eb0a5256dd4eb0b80b0c1ead10663679c7a"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/th/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/th/thunderbird-91.9.1.tar.bz2"; locale = "th"; arch = "linux-i686"; - sha256 = "ad27252f979daad7e7e842ff1144ab731fa4e588adc015f3e388ba26f2cf21de"; + sha256 = "96651e467785e0a56662b98aff11b08db1a1ff4ac93af52b797e2617b286db06"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/tr/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/tr/thunderbird-91.9.1.tar.bz2"; locale = "tr"; arch = "linux-i686"; - sha256 = "55581a2277ea6fa27389fa4ffdda72a02a8c3f8b2c92b0b04e7deb2d24840ee4"; + sha256 = "5b5df531ca83c13f317ec88a1cdb643c915dc5d14ef5e7b03c7dd68c1f21ad0d"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/uk/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/uk/thunderbird-91.9.1.tar.bz2"; locale = "uk"; arch = "linux-i686"; - sha256 = "5b687b3839f6c4ce67c71c56965eccd85eab94063fb9bfc5d4e2f30336f3fe0d"; + sha256 = "058fc28badd07216bc892c3318c021871d8d7937e2bda126a3f390a7ddca7bb0"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/uz/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/uz/thunderbird-91.9.1.tar.bz2"; locale = "uz"; arch = "linux-i686"; - sha256 = "41344413282a295db0c33e7ba01074b46c69d6267f94b36d10200f2adb42b39e"; + sha256 = "0bb4706398f75ec0704da00c0a9d8e0cff6e7d8105927799898d04b2a7d3b53f"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/vi/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/vi/thunderbird-91.9.1.tar.bz2"; locale = "vi"; arch = "linux-i686"; - sha256 = "57bfaac37e13e218d631af0830cef177d342f45a64fc19f86bfc5aa9c940e632"; + sha256 = "8e10bd3577f736c41823203fbbb7738c2f1c9849ba0437a3bf58c06c168abc52"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/zh-CN/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/zh-CN/thunderbird-91.9.1.tar.bz2"; locale = "zh-CN"; arch = "linux-i686"; - sha256 = "417a2b7ca7f3981d171e453ca7ea709fbb05bc2283d874d82a4b002d8e64f816"; + sha256 = "94c9f500b85b9276057cfa24bf9f3650b461c002d083e87b5ab0b567cf7a292e"; } - { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.8.1/linux-i686/zh-TW/thunderbird-91.8.1.tar.bz2"; + { url = "http://archive.mozilla.org/pub/thunderbird/releases/91.9.1/linux-i686/zh-TW/thunderbird-91.9.1.tar.bz2"; locale = "zh-TW"; arch = "linux-i686"; - sha256 = "2c92131700a89dc2c590901cf356705d308aa3520ad3f713ba866fce04edb8c7"; + sha256 = "1d5e6bd0689e51af1a162d4a599d560631df32f867d34ea451e39348b89ec4cd"; } ]; } diff --git a/pkgs/applications/networking/mailreaders/thunderbird/packages.nix b/pkgs/applications/networking/mailreaders/thunderbird/packages.nix index b99d5dedd4b..363b5863569 100644 --- a/pkgs/applications/networking/mailreaders/thunderbird/packages.nix +++ b/pkgs/applications/networking/mailreaders/thunderbird/packages.nix @@ -1,21 +1,15 @@ -{ stdenv, lib, callPackage, fetchurl, fetchpatch, nixosTests }: - -let - common = opts: callPackage (import ../../browsers/firefox/common.nix opts) { - webrtcSupport = false; - geolocationSupport = false; - }; -in +{ stdenv, lib, buildMozillaMach, callPackage, fetchurl, fetchpatch, nixosTests }: rec { - thunderbird = (common rec { + thunderbird = (buildMozillaMach rec { pname = "thunderbird"; - version = "91.8.1"; + version = "91.9.1"; application = "comm/mail"; + applicationName = "Mozilla Thunderbird"; binaryName = pname; src = fetchurl { url = "mirror://mozilla/thunderbird/releases/${version}/source/thunderbird-${version}.source.tar.xz"; - sha512 = "1591f3e9c76c1f2ea7fa5e194a7d030c8657a7855a95c8a177e8067c5aa838f0d8ca2652cd049b4bc88d0c9e604285a47b0c8316c190e2ceadfc1130d1e4de6c"; + sha512 = "997751056ad44367a128aef13ddd55f80798f262644253f814e6e607b3bfc3e33070ed072fa7062586378234cabc7ad106efa26befc3ecb843c5dd02c1498f0f"; }; extraPatches = [ # The file to be patched is different from firefox's `no-buildconfig-ffx90.patch`. @@ -36,6 +30,9 @@ rec { attrPath = "thunderbird-unwrapped"; }; }).override { + geolocationSupport = false; + webrtcSupport = false; + pgoSupport = false; # console.warn: feeds: "downloadFeed: network connection unavailable" }; } diff --git a/pkgs/applications/networking/mujmap/default.nix b/pkgs/applications/networking/mujmap/default.nix new file mode 100644 index 00000000000..247a8d58954 --- /dev/null +++ b/pkgs/applications/networking/mujmap/default.nix @@ -0,0 +1,33 @@ +{ lib +, fetchFromGitHub +, rustPlatform +, notmuch +, stdenv +, Security +}: + +rustPlatform.buildRustPackage rec { + pname = "mujmap"; + version = "0.1.1"; + + src = fetchFromGitHub { + owner = "elizagamedev"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-O5CbLgs+MkATPtess0gocgPB9kwD8FMR/urwm6jo2rA="; + }; + + cargoSha256 = "sha256-nOZ+HnzXhVp+tLrNMZO1NmZIhIqlWz0fRMbHVIQkOxI="; + + buildInputs = [ + notmuch + ] ++ lib.optional stdenv.isDarwin Security; + + meta = with lib; { + description = "Bridge for synchronizing email and tags between JMAP and notmuch"; + homepage = "https://github.com/elizagamedev/mujmap/"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ elizagamedev ]; + mainProgram = "mujmap"; + }; +} diff --git a/pkgs/applications/networking/n8n/node-packages.nix b/pkgs/applications/networking/n8n/node-packages.nix index 1c0eeeb8266..60190f703aa 100644 --- a/pkgs/applications/networking/n8n/node-packages.nix +++ b/pkgs/applications/networking/n8n/node-packages.nix @@ -103,13 +103,13 @@ let sha512 = "UA/8dgLy3+ZiwJjAZHxL4MUB14fFQPkaAOZ94jsTW/Z6WmoOeny2+cLk0+dyIX/iH6qSrEWKwbStEeB970B9pA=="; }; }; - "@azure/storage-blob-12.9.0" = { + "@azure/storage-blob-12.10.0" = { name = "_at_azure_slash_storage-blob"; packageName = "@azure/storage-blob"; - version = "12.9.0"; + version = "12.10.0"; src = fetchurl { - url = "https://registry.npmjs.org/@azure/storage-blob/-/storage-blob-12.9.0.tgz"; - sha512 = "ank38FdCLfJ+EoeMzCz3hkYJuZAd63ARvDKkxZYRDb+beBYf+/+gx8jNTqkq/hfyUl4dJQ/a7tECU0Y0F98CHg=="; + url = "https://registry.npmjs.org/@azure/storage-blob/-/storage-blob-12.10.0.tgz"; + sha512 = "FBEPKGnvtQJS8V8Tg1P9obgmVD9AodrIfwtwhBpsjenClhFyugMp3HPJY0tF7rInUB/CivKBCbnQKrUnKxqxzw=="; }; }; "@babel/runtime-7.17.9" = { @@ -139,13 +139,13 @@ let sha512 = "hrlQOIi7hAfzsMqlGSFyVucrx38O+j6wiGOf//H2ecvIEqYN4ADBSS2iLMh5UFyDunCNniUIPk/q3riFv45xRA=="; }; }; - "@fontsource/open-sans-4.5.8" = { + "@fontsource/open-sans-4.5.10" = { name = "_at_fontsource_slash_open-sans"; packageName = "@fontsource/open-sans"; - version = "4.5.8"; + version = "4.5.10"; src = fetchurl { - url = "https://registry.npmjs.org/@fontsource/open-sans/-/open-sans-4.5.8.tgz"; - sha512 = "3b94XDdRLqL7OlE7OjWg/4pgG825Juw8PLVEDm6h5pio0gMU89ICxfatGxHsBxMGfqad+wnvdmUweZWlELDFpQ=="; + url = "https://registry.npmjs.org/@fontsource/open-sans/-/open-sans-4.5.10.tgz"; + sha512 = "MrtTDfWb1Tu9YxVh2KaKmsKBn6O3KL/lHZS0KRKK58jgqvdwuiDt4QW4udmW4FQf0XOWgnZ+4vKUF80F3SqBAA=="; }; }; "@fortawesome/fontawesome-common-types-6.1.1" = { @@ -517,22 +517,22 @@ let sha512 = "YATxVxgRqNH6nHEIsvg6k2Boc1JHI9ZbH5iWFFv/MTkchz3b1ieGDa5T0a9RznNdI0KhVbdbWSN+KWWrQZRxTw=="; }; }; - "@types/node-12.20.50" = { + "@types/node-12.20.52" = { name = "_at_types_slash_node"; packageName = "@types/node"; - version = "12.20.50"; + version = "12.20.52"; src = fetchurl { - url = "https://registry.npmjs.org/@types/node/-/node-12.20.50.tgz"; - sha512 = "+9axpWx2b2JCVovr7Ilgt96uc6C1zBKOQMpGtRbWT9IoR/8ue32GGMfGA4woP8QyP2gBs6GQWEVM3tCybGCxDA=="; + url = "https://registry.npmjs.org/@types/node/-/node-12.20.52.tgz"; + sha512 = "cfkwWw72849SNYp3Zx0IcIs25vABmFh73xicxhCkTcvtZQeIez15PpwQN8fY3RD7gv1Wrxlc9MEtfMORZDEsGw=="; }; }; - "@types/node-17.0.31" = { + "@types/node-17.0.33" = { name = "_at_types_slash_node"; packageName = "@types/node"; - version = "17.0.31"; + version = "17.0.33"; src = fetchurl { - url = "https://registry.npmjs.org/@types/node/-/node-17.0.31.tgz"; - sha512 = "AR0x5HbXGqkEx9CadRH3EBYx/VkiUgZIhP4wvPn/+5KIsgpNoyFaRlVe0Zlx9gRtg8fA06a9tskE2MSN7TcG4Q=="; + url = "https://registry.npmjs.org/@types/node/-/node-17.0.33.tgz"; + sha512 = "miWq2m2FiQZmaHfdZNcbpp9PuXg34W5JZ5CrJ/BaS70VuhoJENBEQybeiYSaPBRNq6KQGnjfEnc/F3PN++D+XQ=="; }; }; "@types/node-fetch-2.6.1" = { @@ -703,7 +703,7 @@ let version = "1.2.0"; src = fetchurl { url = "https://registry.npmjs.org/adler-32/-/adler-32-1.2.0.tgz"; - sha1 = "6a3e6bf0a63900ba15652808cb15c6813d1a5f25"; + sha512 = "/vUqU/UY4MVeFsg+SsK6c+/05RZXIHZMGJA+PX5JyWI0ZRcBpupnRuPLU/NXXoFwMYCPCoxIfElM2eS+DUXCqQ=="; }; }; "adler-32-1.3.1" = { @@ -757,7 +757,7 @@ let version = "2.1.1"; src = fetchurl { url = "https://registry.npmjs.org/ansi-regex/-/ansi-regex-2.1.1.tgz"; - sha1 = "c3b33ab5ee360d86e0e628f0468ae7ef27d654df"; + sha512 = "TIGnTpdo+E3+pCyAluZvtED5p5wCqLdezCyhPZzKPcxvFplEt4i+W7OONCKgeZFT3+y5NZZfOOS/Bdcanm1MYA=="; }; }; "ansi-regex-5.0.1" = { @@ -775,7 +775,7 @@ let version = "2.2.1"; src = fetchurl { url = "https://registry.npmjs.org/ansi-styles/-/ansi-styles-2.2.1.tgz"; - sha1 = "b432dd3358b634cf75e1e4664368240533c1ddbe"; + sha512 = "kmCevFghRiWM7HB5zTPULl4r9bVFSWjz62MhqizDGUrq2NWuNMQyuv4tHHoKJHs69M/MF64lEcHdYIocrdWQYA=="; }; }; "ansi-styles-4.3.0" = { @@ -793,7 +793,7 @@ let version = "1.3.0"; src = fetchurl { url = "https://registry.npmjs.org/any-promise/-/any-promise-1.3.0.tgz"; - sha1 = "abc6afeedcea52e809cdc0376aed3ce39635d17f"; + sha512 = "7UvmKalWRt1wgjL1RrGxoSJW/0QZFIegpeGvZG9kjp8vrRu55XTHbwnqq2GpXm9uLbcuhxm3IqX9OB4MZR1b2A=="; }; }; "anymatch-3.1.2" = { @@ -847,7 +847,7 @@ let version = "1.1.1"; src = fetchurl { url = "https://registry.npmjs.org/array-flatten/-/array-flatten-1.1.1.tgz"; - sha1 = "9a5f699051b1e7073328f2a008968b64ea2955d2"; + sha512 = "PCVAQswWemu6UdxsDFFX/+gVeYqKAod3D3UVm91jHwynguOwAvYPhx8nNlM++NqRcK6CxxpUafjmhIdKiHibqg=="; }; }; "array-parallel-0.1.3" = { @@ -856,7 +856,7 @@ let version = "0.1.3"; src = fetchurl { url = "https://registry.npmjs.org/array-parallel/-/array-parallel-0.1.3.tgz"; - sha1 = "8f785308926ed5aa478c47e64d1b334b6c0c947d"; + sha512 = "TDPTwSWW5E4oiFiKmz6RGJ/a80Y91GuLgUYuLd49+XBS75tYo8PNgaT2K/OxuQYqkoI852MDGBorg9OcUSTQ8w=="; }; }; "array-series-0.1.5" = { @@ -865,7 +865,7 @@ let version = "0.1.5"; src = fetchurl { url = "https://registry.npmjs.org/array-series/-/array-series-0.1.5.tgz"; - sha1 = "df5d37bfc5c2ef0755e2aa4f92feae7d4b5a972f"; + sha512 = "L0XlBwfx9QetHOsbLDrE/vh2t018w9462HM3iaFfxRiK83aJjAt/Ja3NMkOW7FICwWTlQBa3ZbL5FKhuQWkDrg=="; }; }; "array-union-2.1.0" = { @@ -928,7 +928,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/assert-plus/-/assert-plus-1.0.0.tgz"; - sha1 = "f12e0f3c5d77b0b1cdd9146942e4e96c1e4dd525"; + sha512 = "NfJ4UzBCcQGLDlQq7nHxH+tv3kyZ0hHQqF5BO6J7tNJeP5do1llPr8dZ8zHonfhAu0PHAdMkSo+8o0wxg9lZWw=="; }; }; "async-2.6.4" = { @@ -964,7 +964,7 @@ let version = "0.4.0"; src = fetchurl { url = "https://registry.npmjs.org/asynckit/-/asynckit-0.4.0.tgz"; - sha1 = "c79ed97f7f34cb8f2ba1bc9790bcc366474b4b79"; + sha512 = "Oei9OH4tRh0YqU3GxhX79dM/mwVgvbZJaSNaRk+bshkj0S5cfHcgYakreBjrHwatXKbz+IoIdYLxrKim2MjW0Q=="; }; }; "auto-changelog-1.16.4" = { @@ -985,13 +985,13 @@ let sha512 = "z4oo33lmnvvNRqfUe3YjDGGpqu/L2+wXBIhMtwq6oqZ+exOUAkQYM6zd2VWKF7AIlajOF8ZZuPFfryTG9iLC/w=="; }; }; - "aws-sdk-2.1131.0" = { + "aws-sdk-2.1135.0" = { name = "aws-sdk"; packageName = "aws-sdk"; - version = "2.1131.0"; + version = "2.1135.0"; src = fetchurl { - url = "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.1131.0.tgz"; - sha512 = "Ic3f2fSgVhYDQ0OBGxE6ODtSwaKyxBPGrI2RGrYt2Oj0Z8f227P7dB90o9X7y2MtnuJ4WoAzkf3Vc1c1UnnZlA=="; + url = "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.1135.0.tgz"; + sha512 = "bl9n4QgrEh52hmQ+Jo76BgJXM/p+PwfVZvImEQHFeel/33H/PDLcTJquEw5bzxM1HRNI24iH+FNPwyWLMrttTw=="; }; }; "aws-sign2-0.7.0" = { @@ -1000,7 +1000,7 @@ let version = "0.7.0"; src = fetchurl { url = "https://registry.npmjs.org/aws-sign2/-/aws-sign2-0.7.0.tgz"; - sha1 = "b46e890934a9591f2d2f6f86d7e6a9f1b3fe76a8"; + sha512 = "08kcGqnYf/YmjoRhfxyu+CLxBjUtHLXLXX/vUfx9l2LYzG3c1m61nrpyFUZI6zeS+Li/wWMMidD9KgrqtGq3mA=="; }; }; "aws4-1.11.0" = { @@ -1045,7 +1045,7 @@ let version = "6.26.0"; src = fetchurl { url = "https://registry.npmjs.org/babel-runtime/-/babel-runtime-6.26.0.tgz"; - sha1 = "965c7058668e82b55d7bfe04ff2337bc8b5647fe"; + sha512 = "ITKNuq2wKlW1fJg9sSW52eepoYgZBggvOAHC0u/CYu/qxQ9EVzThCgR69BnSXLHjy2f7SY5zaQ4yt7H9ZVxY2g=="; }; }; "balanced-match-1.0.2" = { @@ -1081,7 +1081,7 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/bcrypt-pbkdf/-/bcrypt-pbkdf-1.0.2.tgz"; - sha1 = "a4301d389b6a43f9b67ff3ca11a3f6637e360e9e"; + sha512 = "qeFIXtP4MSoi6NLqO12WfqARWWuCKi2Rn/9hJLEmtB5yTNr9DqFWkJRCf2qShWzPeAMRnOgCrq0sg/KLv5ES9w=="; }; }; "bcryptjs-2.4.3" = { @@ -1090,7 +1090,7 @@ let version = "2.4.3"; src = fetchurl { url = "https://registry.npmjs.org/bcryptjs/-/bcryptjs-2.4.3.tgz"; - sha1 = "9ab5627b93e60621ff7cdac5da9733027df1d0cb"; + sha512 = "V/Hy/X9Vt7f3BbPJEi8BdVFMByHi+jNXrYkW3huaybV/kQ0KJg0Y6PkEMbn+zeT+i+SiKZ/HMqJGIIt4LZDqNQ=="; }; }; "big-integer-1.6.51" = { @@ -1108,7 +1108,7 @@ let version = "2.4.0"; src = fetchurl { url = "https://registry.npmjs.org/bignumber.js/-/bignumber.js-2.4.0.tgz"; - sha1 = "838a992da9f9d737e0f4b2db0be62bb09dd0c5e8"; + sha512 = "uw4ra6Cv483Op/ebM0GBKKfxZlSmn6NgFRby5L3yGTlunLj53KQgndDlqy2WVFOwgvurocApYkSud0aO+mvrpQ=="; }; }; "binary-extensions-2.2.0" = { @@ -1126,7 +1126,7 @@ let version = "0.0.2"; src = fetchurl { url = "https://registry.npmjs.org/binascii/-/binascii-0.0.2.tgz"; - sha1 = "a7f8a8801dbccf8b1756b743daa0fee9e2d9e0ee"; + sha512 = "rA2CrUl1+6yKrn+XgLs8Hdy18OER1UW146nM+ixzhQXDY+Bd3ySkyIJGwF2a4I45JwbvF1mDL/nWkqBwpOcdBA=="; }; }; "bintrees-1.0.1" = { @@ -1135,7 +1135,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/bintrees/-/bintrees-1.0.1.tgz"; - sha1 = "0e655c9b9c2435eaab68bf4027226d2b55a34524"; + sha512 = "tbaUB1QpTIj4cKY8c1rvNAvEQXA+ekzHmbe4jzNfW3QWsF9GnnP/BRWyl6/qqS53heoYJ93naaFcm/jooONH8g=="; }; }; "bitsyntax-0.1.0" = { @@ -1180,7 +1180,7 @@ let version = "2.11.0"; src = fetchurl { url = "https://registry.npmjs.org/bluebird/-/bluebird-2.11.0.tgz"; - sha1 = "534b9033c022c9579c56ba3b3e5a5caafbb650e1"; + sha512 = "UfFSr22dmHPQqPP9XWHRhq+gWnHCYguQGkXQlbyPtW5qTnhFWA8/iXg765tH0cAjy7l/zPJ1aBTO0g5XgA7kvQ=="; }; }; "bluebird-3.7.2" = { @@ -1225,7 +1225,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/boolbase/-/boolbase-1.0.0.tgz"; - sha1 = "68dff5fbe60c51eb37725ea9e3ed310dcc1e776e"; + sha512 = "JZOSA7Mo9sNGB8+UjSgzdLtokWAky1zbztM3WRLCbZ70/3cTANmQmOdR7y2g+J0e2WXywy1yS468tY+IruqEww=="; }; }; "brace-expansion-1.1.11" = { @@ -1252,7 +1252,7 @@ let version = "0.3.3"; src = fetchurl { url = "https://registry.npmjs.org/browser-request/-/browser-request-0.3.3.tgz"; - sha1 = "9ece5b5aca89a29932242e18bf933def9876cc17"; + sha512 = "YyNI4qJJ+piQG6MMEuo7J3Bzaqssufx04zpEKYfSrl/1Op59HWali9zMtBpXnkmqMcOuWJPZvudrm9wISmnCbg=="; }; }; "bson-1.1.6" = { @@ -1288,7 +1288,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/buffer-equal-constant-time/-/buffer-equal-constant-time-1.0.1.tgz"; - sha1 = "f8e71132f7ffe6e01a5c9697a4c6f3e48d5cc819"; + sha512 = "zRpUiDwd/xk6ADqPMATG8vc9VPrkck7T07OIx0gnjmJAnHnTVXNQG3vfvWNuiZIkwu9KrKdA1iJKfsfTVxE6NA=="; }; }; "buffer-from-1.1.2" = { @@ -1342,7 +1342,7 @@ let version = "3.0.0"; src = fetchurl { url = "https://registry.npmjs.org/bytes/-/bytes-3.0.0.tgz"; - sha1 = "d32815404d689699f85a4ea4fa8755dd13a96048"; + sha512 = "pMhOfFDPiv9t5jjIXkHosWmkSyQbvsgEVNkz0ERHbuLh2T/7j4Mqqpz523Fe8MVY89KC6Sh/QfS2sM+SjgFDcw=="; }; }; "bytes-3.1.2" = { @@ -1369,7 +1369,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/callback-stream/-/callback-stream-1.1.0.tgz"; - sha1 = "4701a51266f06e06eaa71fc17233822d875f4908"; + sha512 = "sAZ9kODla+mGACBZ1IpTCAisKoGnv6PykW7fPk1LrM+mMepE18Yz0515yoVcrZy7dQsTUp3uZLQ/9Sx1RnLoHw=="; }; }; "callsites-3.1.0" = { @@ -1405,7 +1405,7 @@ let version = "0.12.0"; src = fetchurl { url = "https://registry.npmjs.org/caseless/-/caseless-0.12.0.tgz"; - sha1 = "1b681c21ff84033c826543090689420d187151dc"; + sha512 = "4tYFyifaFfGacoiObjJegolkwSU4xQNGbVgUiNYVUxbQ2x2lUsFvY4hVgVzGiIe6WLOPqycWXA40l+PWsxthUw=="; }; }; "cfb-1.2.2" = { @@ -1423,7 +1423,7 @@ let version = "1.1.3"; src = fetchurl { url = "https://registry.npmjs.org/chalk/-/chalk-1.1.3.tgz"; - sha1 = "a8115c55e4a702fe4d150abd3872822a7e09fc98"; + sha512 = "U3lRVLMSlsCfjqYPbLyVv11M9CPW4I728d6TCKMAOJueEeB9/8o+eSsMnxPJD+Q+K909sdESg7C+tIkoH6on1A=="; }; }; "chalk-4.1.2" = { @@ -1459,7 +1459,7 @@ let version = "0.0.2"; src = fetchurl { url = "https://registry.npmjs.org/charenc/-/charenc-0.0.2.tgz"; - sha1 = "c0a1d2f3a7092e03774bfa83f14c0fc5790a8667"; + sha512 = "yrLQ/yVUFXkzg7EDQsPieE/53+0RlaWTs+wBrvW36cyilJ2SaDWfl4Yj7MtLTXleV9uEKefbAGUPv2/iWSooRA=="; }; }; "cheerio-1.0.0-rc.6" = { @@ -1504,7 +1504,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/clamp/-/clamp-1.0.1.tgz"; - sha1 = "66a0e64011816e37196828fdc8c8c147312c8634"; + sha512 = "kgMuFyE78OC6Dyu3Dy7vcx4uy97EIbVxJB/B0eJ3bUNAkwdNcxYzgKltnyADiYwsR7SEqkkUPsEUT//OVS6XMA=="; }; }; "class-validator-0.13.2" = { @@ -1531,7 +1531,7 @@ let version = "0.1.7"; src = fetchurl { url = "https://registry.npmjs.org/cli-color/-/cli-color-0.1.7.tgz"; - sha1 = "adc3200fa471cc211b0da7f566b71e98b9d67347"; + sha512 = "xNaQxWYgI6DD4xIJLn8GY2zDZVbrN0vsU1fEbDNAHZRyceWhpj7A08mYcG1AY92q1Aw0geYkVfiAcEYIZtuTSg=="; }; }; "cli-cursor-3.1.0" = { @@ -2470,13 +2470,13 @@ let sha512 = "mQw+2fkQbALzQ7V0MY0IqdnXNOeTtP4r0lN9z7AAawCXgqea7bDii20AYrIBrFd/Hx0M2Ocz6S111CaFkUcb0Q=="; }; }; - "eventsource-1.1.0" = { + "eventsource-2.0.2" = { name = "eventsource"; packageName = "eventsource"; - version = "1.1.0"; + version = "2.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/eventsource/-/eventsource-1.1.0.tgz"; - sha512 = "VSJjT5oCNrFvCS6igjzPAt5hBzQ2qPBFIbJ03zLI9SE0mxwZpMw6BfJrbFHm1a141AavMEB8JHmBhWAd66PfCg=="; + url = "https://registry.npmjs.org/eventsource/-/eventsource-2.0.2.tgz"; + sha512 = "IzUmBGPR3+oUG9dUeXynyNmf91/3zUSJg1lCktzKw47OXuhco54U3r9B7O4XX+Rb1Itm9OZ2b0RkTs10bICOxA=="; }; }; "exit-on-epipe-1.0.1" = { @@ -2893,13 +2893,13 @@ let sha1 = "5eff8e3e684d569ae4cb2b1282604e8ba62149fa"; }; }; - "glob-7.2.0" = { + "glob-7.2.3" = { name = "glob"; packageName = "glob"; - version = "7.2.0"; + version = "7.2.3"; src = fetchurl { - url = "https://registry.npmjs.org/glob/-/glob-7.2.0.tgz"; - sha512 = "lmLf6gtyrPq8tTjSmrO94wBeQbFR3HbLHbuyD69wuyQkImp2hWqMGB47OX65FBkPffO641IP9jWa1z4ivqG26Q=="; + url = "https://registry.npmjs.org/glob/-/glob-7.2.3.tgz"; + sha512 = "nFR0zLpU2YCaRxwoCJvL6UvCH2JFyFVIvwTLsIf21AuHlMskA1hhTdk+LlYJtOlYt9v6dvszD2BGRqBL+iQK9Q=="; }; }; "glob-parent-3.1.0" = { @@ -3640,13 +3640,13 @@ let sha1 = "bb935d48582cba168c06834957a54a3e07124f11"; }; }; - "isbot-3.4.6" = { + "isbot-3.4.7" = { name = "isbot"; packageName = "isbot"; - version = "3.4.6"; + version = "3.4.7"; src = fetchurl { - url = "https://registry.npmjs.org/isbot/-/isbot-3.4.6.tgz"; - sha512 = "EEi3SVCPB4WHtMBaAYzYLgCP7yG9qixseYCf3IG0Yc+howLia+XFPLTT1437rzeViLeDInKOXOdFhs9Fa/xgWQ=="; + url = "https://registry.npmjs.org/isbot/-/isbot-3.4.7.tgz"; + sha512 = "huiRPlUf/je4GfR/pms78bOnUYRmwo2Dg/d9aRQCPXIIK3uX6u+iRFuTLsq969X40JcCunHrbS4SFlXIcEIoUw=="; }; }; "isexe-2.0.0" = { @@ -4531,49 +4531,49 @@ let sha512 = "z81GNO7nnYMEhrGh9LeymoE4+Yr0Wn5McHIZMK5cfQCl+NDX08sCZgUc9/6MHni9IWuFLm1Z3HTCXu2z9fN62Q=="; }; }; - "n8n-core-0.116.0" = { + "n8n-core-0.117.0" = { name = "n8n-core"; packageName = "n8n-core"; - version = "0.116.0"; + version = "0.117.0"; src = fetchurl { - url = "https://registry.npmjs.org/n8n-core/-/n8n-core-0.116.0.tgz"; - sha512 = "D9X+D7gsUTKMacHIixEJuZpOB7DW/g42W+FBKLrj+6BUP1JMKG02G0C+Ef38e2XuNObMoLdLkI70snyvi1oq1g=="; + url = "https://registry.npmjs.org/n8n-core/-/n8n-core-0.117.0.tgz"; + sha512 = "GEU8qBS/Gt+2FHNNb8txDkerzG7vlfDdeiy56lPF+oZJyEZzqgSJ8fNRUcv2b2kd5XjU9zTDcmjARclDC6SNmA=="; }; }; - "n8n-design-system-0.19.0" = { + "n8n-design-system-0.20.0" = { name = "n8n-design-system"; packageName = "n8n-design-system"; - version = "0.19.0"; + version = "0.20.0"; src = fetchurl { - url = "https://registry.npmjs.org/n8n-design-system/-/n8n-design-system-0.19.0.tgz"; - sha512 = "qIcmHAtVJotgiYo3vVMLwC9qaU5ih5ti4+aPu2I1onD6WEu8GMNF38AzIAceYl6U8EhvDB+DOsF/SjYHfl26iw=="; + url = "https://registry.npmjs.org/n8n-design-system/-/n8n-design-system-0.20.0.tgz"; + sha512 = "uqcrm+fRtTd7A6+ai48GFcjpU4nIV+UmPld8p/8hoUpwCY265AojGaSKCWHzt8TceLCJXx5rlmLliE+v69d/sA=="; }; }; - "n8n-editor-ui-0.142.1" = { + "n8n-editor-ui-0.143.0" = { name = "n8n-editor-ui"; packageName = "n8n-editor-ui"; - version = "0.142.1"; + version = "0.143.0"; src = fetchurl { - url = "https://registry.npmjs.org/n8n-editor-ui/-/n8n-editor-ui-0.142.1.tgz"; - sha512 = "Me8fk76HeWUmTPnksH4kzG0bKOp1yLFjAC4F+EcEllIIf+x75kjN+gSH4uwgvspzGCVO88ZnppWoGQwvHQpXQw=="; + url = "https://registry.npmjs.org/n8n-editor-ui/-/n8n-editor-ui-0.143.0.tgz"; + sha512 = "deb5c30jpLw4YKetmTeLNIyki7td2R24uVzsZ3BDGElybR+0DaJbMBRIZ6+bjq8IS750gaTeumKrH8ZBq9BSkg=="; }; }; - "n8n-nodes-base-0.174.0" = { + "n8n-nodes-base-0.175.0" = { name = "n8n-nodes-base"; packageName = "n8n-nodes-base"; - version = "0.174.0"; + version = "0.175.0"; src = fetchurl { - url = "https://registry.npmjs.org/n8n-nodes-base/-/n8n-nodes-base-0.174.0.tgz"; - sha512 = "2yYWeSkfI08BtgGZvOksmQOpjNPYmhvkqO2SBTuTAqkryZ1AHiw6RtILsf2575prQDdep2clxIZxW7owxxFmLA=="; + url = "https://registry.npmjs.org/n8n-nodes-base/-/n8n-nodes-base-0.175.0.tgz"; + sha512 = "KfyEbhK4T0sULZ75jcjU0U1IqXm/MNzL7GpRhBjDumDE1WRfpKSBdtYGFsHCbUEXroHnJjF2/L+ADJ9CV0g5MQ=="; }; }; - "n8n-workflow-0.98.0" = { + "n8n-workflow-0.99.0" = { name = "n8n-workflow"; packageName = "n8n-workflow"; - version = "0.98.0"; + version = "0.99.0"; src = fetchurl { - url = "https://registry.npmjs.org/n8n-workflow/-/n8n-workflow-0.98.0.tgz"; - sha512 = "MrlEpSUueIkMc9P75h09ozXN2SQyV26qEe2PlQ9+nwRnCPYkikQQtgYZDqQI+bHVHFCMdBZOnq59fse0cMpYfQ=="; + url = "https://registry.npmjs.org/n8n-workflow/-/n8n-workflow-0.99.0.tgz"; + sha512 = "JVZQnncjVphY73jcPY2oW4fZ0WoKDDwC1Xzf509KAu362psOJ5Xrz4mAJwuj7Qv1H88UGhEOojvt/5gbRLi4zA=="; }; }; "named-placeholders-1.1.2" = { @@ -4927,15 +4927,6 @@ let sha1 = "77c0cb37c41525d64166d990ffad7ec6a0e1363e"; }; }; - "original-1.0.2" = { - name = "original"; - packageName = "original"; - version = "1.0.2"; - src = fetchurl { - url = "https://registry.npmjs.org/original/-/original-1.0.2.tgz"; - sha512 = "hyBVl6iqqUOJ8FqRe+l/gS8H+kKYjrEndd5Pm1MfBtsEKA038HkkdbAl/72EAXGyonD/PFsvmVG+EvcIpliMBg=="; - }; - }; "os-tmpdir-1.0.2" = { name = "os-tmpdir"; packageName = "os-tmpdir"; @@ -5089,13 +5080,13 @@ let sha512 = "uWlGT3YSnK9x3BQJaOdcZwrnV6hPpd8jFH1/ucpiLRPh/2zCVJKS19E4GvYHvaCcACn3foXZ0cLB9Wrx1KGe5g=="; }; }; - "passport-0.5.2" = { + "passport-0.5.3" = { name = "passport"; packageName = "passport"; - version = "0.5.2"; + version = "0.5.3"; src = fetchurl { - url = "https://registry.npmjs.org/passport/-/passport-0.5.2.tgz"; - sha512 = "w9n/Ot5I7orGD4y+7V3EFJCQEznE5RxHamUxcqLT2QoJY0f2JdN8GyHonYFvN0Vz+L6lUJfVhrk2aZz2LbuREw=="; + url = "https://registry.npmjs.org/passport/-/passport-0.5.3.tgz"; + sha512 = "gGc+70h4gGdBWNsR3FuV3byLDY6KBTJAIExGFXTpQaYfbbcHCBlRRKx7RBQSpqEqc5Hh2qVzRs7ssvSfOpkUEA=="; }; }; "passport-cookie-1.0.9" = { @@ -7186,13 +7177,13 @@ let sha512 = "+NYs2QeMWy+GWFOEm9xnn6HCDp0l7QBD7ml8zLUmJ+93Q5NF0NocErnwkTkXVFNiX3/fpC6afS8Dhb/gz7R7eg=="; }; }; - "v-click-outside-3.1.2" = { + "v-click-outside-3.2.0" = { name = "v-click-outside"; packageName = "v-click-outside"; - version = "3.1.2"; + version = "3.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/v-click-outside/-/v-click-outside-3.1.2.tgz"; - sha512 = "gMdRqfRE6m6XU6SiFi3dyBlFB2MWogiXpof8Aa3LQysrl9pzTndqp/iEaAphLoadaQUFnQ0ec6fLLaxr7LiY6A=="; + url = "https://registry.npmjs.org/v-click-outside/-/v-click-outside-3.2.0.tgz"; + sha512 = "QD0bDy38SHJXQBjgnllmkI/rbdiwmq9RC+/+pvrFjYJKTn8dtp7Penf9q1lLBta280fYG2q53mgLhQ+3l3z74w=="; }; }; "validator-13.7.0" = { @@ -7570,10 +7561,10 @@ in n8n = nodeEnv.buildNodePackage { name = "n8n"; packageName = "n8n"; - version = "0.176.0"; + version = "0.177.0"; src = fetchurl { - url = "https://registry.npmjs.org/n8n/-/n8n-0.176.0.tgz"; - sha512 = "eJTzCFcujAfJegWKQhGi+upAsfTEpW1/2HC5vwV2btdgm8XCMyhVBMJJR7ZJMozFNDz8ErLhwtlIfQCQSXRP0A=="; + url = "https://registry.npmjs.org/n8n/-/n8n-0.177.0.tgz"; + sha512 = "13x/zsHa64Dw/0BhjmlZEGvABJxkZeKTG0oKXzRf1Vq/zoctxofapx188ccJzYQ+tZnOHdX0arjf2baQDTNIGw=="; }; dependencies = [ (sources."@azure/abort-controller-1.1.0" // { @@ -7620,7 +7611,7 @@ in ]; }) sources."@azure/ms-rest-nodeauth-3.1.1" - (sources."@azure/storage-blob-12.9.0" // { + (sources."@azure/storage-blob-12.10.0" // { dependencies = [ sources."tslib-2.4.0" ]; @@ -7633,7 +7624,7 @@ in sources."kuler-2.0.0" ]; }) - sources."@fontsource/open-sans-4.5.8" + sources."@fontsource/open-sans-4.5.10" sources."@fortawesome/fontawesome-common-types-6.1.1" sources."@fortawesome/free-regular-svg-icons-6.1.1" sources."@icetee/ftp-0.3.15" @@ -7694,7 +7685,7 @@ in sources."@types/lodash-4.14.182" sources."@types/lossless-json-1.0.1" sources."@types/mime-1.3.2" - sources."@types/node-17.0.31" + sources."@types/node-17.0.33" (sources."@types/node-fetch-2.6.1" // { dependencies = [ sources."form-data-3.0.1" @@ -7762,7 +7753,7 @@ in ]; }) sources."avsc-5.7.4" - (sources."aws-sdk-2.1131.0" // { + (sources."aws-sdk-2.1135.0" // { dependencies = [ sources."buffer-4.9.2" sources."events-1.1.1" @@ -8014,7 +8005,7 @@ in sources."etag-1.8.1" sources."event-target-shim-5.0.1" sources."events-3.3.0" - sources."eventsource-1.1.0" + sources."eventsource-2.0.2" sources."exit-on-epipe-1.0.1" sources."expand-tilde-2.0.2" (sources."express-4.18.1" // { @@ -8072,7 +8063,7 @@ in sources."get-symbol-description-1.0.0" sources."get-system-fonts-2.0.2" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" (sources."glob-stream-6.1.0" // { dependencies = [ @@ -8174,7 +8165,7 @@ in sources."is-windows-1.0.2" sources."is-wsl-2.2.0" sources."isarray-0.0.1" - sources."isbot-3.4.6" + sources."isbot-3.4.7" sources."isexe-2.0.0" sources."iso-639-1-2.1.13" sources."isstream-0.1.2" @@ -8319,15 +8310,15 @@ in ]; }) sources."mz-2.7.0" - sources."n8n-core-0.116.0" - sources."n8n-design-system-0.19.0" - sources."n8n-editor-ui-0.142.1" - (sources."n8n-nodes-base-0.174.0" // { + sources."n8n-core-0.117.0" + sources."n8n-design-system-0.20.0" + sources."n8n-editor-ui-0.143.0" + (sources."n8n-nodes-base-0.175.0" // { dependencies = [ sources."iconv-lite-0.6.3" ]; }) - sources."n8n-workflow-0.98.0" + sources."n8n-workflow-0.99.0" (sources."named-placeholders-1.1.2" // { dependencies = [ sources."lru-cache-4.1.5" @@ -8385,7 +8376,6 @@ in sources."string_decoder-1.1.1" ]; }) - sources."original-1.0.2" sources."os-tmpdir-1.0.2" sources."p-cancelable-2.1.1" sources."p-finally-1.0.0" @@ -8410,7 +8400,7 @@ in sources."tslib-2.4.0" ]; }) - sources."passport-0.5.2" + sources."passport-0.5.3" sources."passport-cookie-1.0.9" sources."passport-jwt-4.0.0" sources."passport-strategy-1.0.0" @@ -8642,7 +8632,7 @@ in sources."tdigest-0.1.1" (sources."tedious-6.7.1" // { dependencies = [ - sources."@types/node-12.20.50" + sources."@types/node-12.20.52" sources."bl-3.0.1" sources."iconv-lite-0.5.2" sources."readable-stream-3.6.0" @@ -8737,7 +8727,7 @@ in sources."utils-merge-1.0.1" sources."uuencode-0.0.4" sources."uuid-8.3.2" - sources."v-click-outside-3.1.2" + sources."v-click-outside-3.2.0" sources."validator-13.7.0" sources."vary-1.1.2" sources."verror-1.10.0" diff --git a/pkgs/applications/networking/netperf/default.nix b/pkgs/applications/networking/netperf/default.nix index fe5588d81f8..880ebdd2d4e 100644 --- a/pkgs/applications/networking/netperf/default.nix +++ b/pkgs/applications/networking/netperf/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation { pname = "netperf"; - version = "20180613"; + version = "20210121"; src = fetchFromGitHub { owner = "HewlettPackard"; repo = "netperf"; - rev = "bcb868bde7f0203bbab69609f65d4088ba7398db"; - sha256 = "1wbbgdvhadd3qs3afv6i777argdpcyxkwz4yv6aqp223n8ki6dm8"; + rev = "3bc455b23f901dae377ca0a558e1e32aa56b31c4"; + sha256 = "s4G1ZN+6LERdEMDkc+12ZQgTi6K+ppUYUCGn4faCS9c="; }; buildInputs = lib.optional (with stdenv.hostPlatform; isx86 && isLinux) libsmbios; @@ -22,7 +22,7 @@ stdenv.mkDerivation { meta = { description = "Benchmark to measure the performance of many different types of networking"; homepage = "http://www.netperf.org/netperf/"; - license = "Hewlett-Packard BSD-like license"; + license = lib.licenses.mit; platforms = lib.platforms.unix; maintainers = [ lib.maintainers.mmlb ]; diff --git a/pkgs/applications/networking/nextcloud-client/default.nix b/pkgs/applications/networking/nextcloud-client/default.nix index 52e2e083ca1..d2850b176f4 100644 --- a/pkgs/applications/networking/nextcloud-client/default.nix +++ b/pkgs/applications/networking/nextcloud-client/default.nix @@ -1,7 +1,6 @@ { lib , mkDerivation , fetchFromGitHub -, fetchpatch , cmake , extra-cmake-modules , inotify-tools @@ -27,7 +26,7 @@ mkDerivation rec { pname = "nextcloud-client"; - version = "3.5.0"; + version = "3.5.1"; outputs = [ "out" "dev" ]; @@ -35,18 +34,13 @@ mkDerivation rec { owner = "nextcloud"; repo = "desktop"; rev = "v${version}"; - sha256 = "sha256-eFtBdnwHaLirzZaHDw6SRfmsqO3dmBB8Y9csJuiTf1A="; + sha256 = "sha256-/Bz3vkV4+ZFlGBNtkLIGsBk51a3wxy32U1KYcA3awcw="; }; patches = [ # Explicitly move dbus configuration files to the store path rather than `/etc/dbus-1/services`. ./0001-Explicitly-copy-dbus-files-into-the-store-dir.patch ./0001-When-creating-the-autostart-entry-do-not-use-an-abso.patch - # don't write cacheDir into home directory - (fetchpatch { - url = "https://github.com/nextcloud/desktop/commit/3a8aa8a2a88bc9b68098b7866e2a07aa23d3a33c.patch"; - sha256 = "sha256-OviPANvXap3mg4haxRir/CK1aq8maWZDM/IVsN+OHgk="; - }) ]; postPatch = '' diff --git a/pkgs/applications/networking/opsdroid/default.nix b/pkgs/applications/networking/opsdroid/default.nix index ff6760d3daa..9b5b27e7ca4 100644 --- a/pkgs/applications/networking/opsdroid/default.nix +++ b/pkgs/applications/networking/opsdroid/default.nix @@ -17,7 +17,7 @@ python3Packages.buildPythonPackage rec { doCheck = false; propagatedBuildInputs = with python3Packages; [ - click Babel opsdroid_get_image_size slackclient webexteamssdk bleach + click babel opsdroid_get_image_size slackclient webexteamssdk bleach parse emoji puremagic yamale nbformat websockets pycron nbconvert aiohttp matrix-api-async aioredis aiosqlite arrow pyyaml motor regex mattermostdriver setuptools voluptuous ibm-watson tailer multidict diff --git a/pkgs/applications/networking/p2p/tixati/default.nix b/pkgs/applications/networking/p2p/tixati/default.nix index 0d44f084086..9a0cc70c199 100644 --- a/pkgs/applications/networking/p2p/tixati/default.nix +++ b/pkgs/applications/networking/p2p/tixati/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "tixati"; - version = "2.88"; + version = "2.89"; src = fetchurl { url = "https://download2.tixati.com/download/tixati-${version}-1.x86_64.manualinstall.tar.gz"; - sha256 = "sha256-9d9Z+3Uyxy4Bj8STtzHWwyyhWeMv3wo0IH6uxGTaA0I="; + sha256 = "sha256-fd7DMKoRxNmNjCxl2ViINjnCEXJrhJU4aaRT+NoB1vI="; }; installPhase = '' diff --git a/pkgs/applications/networking/p2p/zeronet-conservancy/default.nix b/pkgs/applications/networking/p2p/zeronet-conservancy/default.nix new file mode 100644 index 00000000000..a170906481c --- /dev/null +++ b/pkgs/applications/networking/p2p/zeronet-conservancy/default.nix @@ -0,0 +1,50 @@ +{ lib +, fetchFromGitHub +, python3Packages +}: + +python3Packages.buildPythonApplication rec { + pname = "zeronet-conservancy"; + version = "0.7.5"; + format = "other"; + + src = fetchFromGitHub { + owner = "zeronet-conservancy"; + repo = "zeronet-conservancy"; + rev = "v${version}"; + sha256 = "sha256-cq0q5hXEhazHPJODNJ8iL0qAB5DJW6ANST4r/rslvXk="; + }; + + propagatedBuildInputs = with python3Packages; [ + gevent msgpack base58 merkletools rsa pysocks pyasn1 websocket-client + gevent-websocket rencode bitcoinlib maxminddb pyopenssl rich + ]; + + buildPhase = '' + ${python3Packages.python.interpreter} -O -m compileall . + ''; + + installPhase = '' + mkdir -p $out/share + cp -r plugins src *.py $out/share/ + ''; + + postFixup = '' + makeWrapper "$out/share/zeronet.py" "$out/bin/zeronet" \ + --set PYTHONPATH "$PYTHONPATH" \ + --set PATH ${python3Packages.python}/bin + ''; + + meta = with lib; { + description = "A fork/continuation of the ZeroNet project"; + longDescription = '' + zeronet-conservancy is a fork/continuation of ZeroNet project (that has + been abandoned by its creator) that is dedicated to sustaining existing + p2p network and developing its values of decentralization and freedom, + while gradually switching to a better designed network. + ''; + homepage = "https://github.com/zeronet-conservancy/zeronet-conservancy"; + license = licenses.gpl3Only; + maintainers = with maintainers; [ fgaz ]; + }; +} diff --git a/pkgs/applications/networking/p2p/zeronet/default.nix b/pkgs/applications/networking/p2p/zeronet/default.nix index 19da740938c..02b0c91e2da 100644 --- a/pkgs/applications/networking/p2p/zeronet/default.nix +++ b/pkgs/applications/networking/p2p/zeronet/default.nix @@ -37,5 +37,9 @@ python3Packages.buildPythonApplication rec { homepage = "https://zeronet.io/"; license = licenses.gpl2; maintainers = with maintainers; [ fgaz ]; + knownVulnerabilities = [ '' + Unmaintained. Probable XSS/code injection vulnerability. + Switching to the maintained zeronet-conservancy package is recommended + '' ]; }; } diff --git a/pkgs/applications/networking/protocol/default.nix b/pkgs/applications/networking/protocol/default.nix index 6690a75485b..535cc3aa317 100644 --- a/pkgs/applications/networking/protocol/default.nix +++ b/pkgs/applications/networking/protocol/default.nix @@ -1,8 +1,12 @@ -{ lib, buildPythonApplication, fetchFromGitHub }: +{ lib +, python3 +, fetchFromGitHub +}: -buildPythonApplication { - pname = "protocol-unstable"; - version = "2019-03-28"; +python3.pkgs.buildPythonApplication rec { + pname = "protocol"; + version = "unstable-2019-03-28"; + format = "setuptools"; src = fetchFromGitHub { owner = "luismartingarcia"; @@ -11,10 +15,15 @@ buildPythonApplication { sha256 = "13l10jhf4vghanmhh3pn91b2jdciispxy0qadz4n08blp85qn9cm"; }; + postPatch = '' + substituteInPlace setup.py \ + --replace "scripts=['protocol', 'constants.py', 'specs.py']" "scripts=['protocol'], py_modules=['constants', 'specs']" + ''; + meta = with lib; { - description = "An ASCII Header Generator for Network Protocols"; + description = "ASCII Header Generator for Network Protocols"; homepage = "https://github.com/luismartingarcia/protocol"; - license = licenses.gpl3; + license = licenses.gpl3Plus; maintainers = with maintainers; [ teto ]; }; } diff --git a/pkgs/applications/networking/station/default.nix b/pkgs/applications/networking/station/default.nix index b0e53a054d2..9409a3c5fcd 100644 --- a/pkgs/applications/networking/station/default.nix +++ b/pkgs/applications/networking/station/default.nix @@ -1,4 +1,4 @@ -{ appimageTools, fetchurl, gsettings-desktop-schemas, gtk3, lib }: +{ appimageTools, fetchurl, lib }: let pname = "station"; @@ -18,7 +18,6 @@ in appimageTools.wrapType2 rec { profile = '' export LC_ALL=C.UTF-8 - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS ''; multiPkgs = null; diff --git a/pkgs/applications/networking/termius/default.nix b/pkgs/applications/networking/termius/default.nix index b96210529e7..30a2570cada 100644 --- a/pkgs/applications/networking/termius/default.nix +++ b/pkgs/applications/networking/termius/default.nix @@ -13,7 +13,7 @@ stdenv.mkDerivation rec { pname = "termius"; - version = "7.39.0"; + version = "7.40.2"; src = fetchurl { # find the latest version with @@ -22,8 +22,8 @@ stdenv.mkDerivation rec { # curl -H 'X-Ubuntu-Series: 16' https://api.snapcraft.io/api/v1/snaps/details/termius-app | jq '.download_url' -r # and the sha512 with # curl -H 'X-Ubuntu-Series: 16' https://api.snapcraft.io/api/v1/snaps/details/termius-app | jq '.download_sha512' -r - url = "https://api.snapcraft.io/api/v1/snaps/download/WkTBXwoX81rBe3s3OTt3EiiLKBx2QhuS_111.snap"; - sha512 = "1c90f249fd1802d4ed032b85ee835ca04e84e673caff339b6ce9b35188fec65a3ccce0e2a8a9afef46354ed5886ab17c612468ad7281c660c904b180753a1729"; + url = "https://api.snapcraft.io/api/v1/snaps/download/WkTBXwoX81rBe3s3OTt3EiiLKBx2QhuS_113.snap"; + sha512 = "33f8f367a9fe232cf359869dfa0aa55c9be6f6c0e1ebdf7d65ae4616afe0fe2b61c57697f6d67d5e71f5dffd163eb601d8f2d2757712b01d0d32eb027018c2d3"; }; desktopItem = makeDesktopItem { diff --git a/pkgs/applications/networking/twtxt/default.nix b/pkgs/applications/networking/twtxt/default.nix index 27420f8bd33..792c13aa23f 100644 --- a/pkgs/applications/networking/twtxt/default.nix +++ b/pkgs/applications/networking/twtxt/default.nix @@ -23,6 +23,11 @@ buildPythonApplication rec { checkInputs = [ pytestCheckHook tox ]; + disabledTests = [ + # Disable test using relative date and time + "test_tweet_relative_datetime" + ]; + meta = with lib; { description = "Decentralised, minimalist microblogging service for hackers"; homepage = "https://github.com/buckket/twtxt"; diff --git a/pkgs/applications/office/banking/default.nix b/pkgs/applications/office/banking/default.nix index c46fba17149..07ce23a215e 100644 --- a/pkgs/applications/office/banking/default.nix +++ b/pkgs/applications/office/banking/default.nix @@ -9,7 +9,7 @@ , meson , ninja , pkg-config -, wrapGAppsHook +, wrapGAppsHook4 , gobject-introspection , libadwaita , librsvg @@ -42,6 +42,9 @@ python3.pkgs.buildPythonApplication rec { ]; postPatch = '' + substituteInPlace meson_post_install.py \ + --replace gtk-update-icon-cache gtk4-update-icon-cache + patchShebangs meson_post_conf.py meson_post_install.py ''; @@ -53,7 +56,7 @@ python3.pkgs.buildPythonApplication rec { meson ninja pkg-config - wrapGAppsHook + wrapGAppsHook4 ]; buildInputs = [ diff --git a/pkgs/applications/office/calligra/default.nix b/pkgs/applications/office/calligra/default.nix index e18c0f21ae3..57b23ea95d1 100644 --- a/pkgs/applications/office/calligra/default.nix +++ b/pkgs/applications/office/calligra/default.nix @@ -30,18 +30,23 @@ mkDerivation rec { sha256 = "11dzrp9q05dmvnwp4vk4ihcibqcf4xyr0ijscpi716cyy730flma"; excludes = [ "CMakeLists.txt" ]; }) - # Fixes for building calligra with modern poppler[-qt5] - (fetchpatch { - name = "poppler-22.03.0.patch"; - url = "https://github.com/archlinux/svntogit-packages/raw/8f328bef497a9e3bc628e4e294c1a70b0c8b0eab/trunk/poppler-22.03.0.patch"; - sha256 = "sha256-bOTnQcavXF49LIshNgzhXhyoEjzLmQJC/U7hO5P0bfY="; - }) # Fixes for building calligra with gcc11/c++17 (fetchpatch { name = "build_c++17_poppler.patch"; url = "https://github.com/archlinux/svntogit-packages/raw/bbbe35f97eb1033798f1cf95d427890168598199/trunk/068cd9ae.patch"; sha256 = "sha256-d9/ILwSeW+ov11DF191hzIaUafO/rjQrAeONwqDSKbA="; }) + # Fixes for building calligra with modern poppler[-qt5] + (fetchpatch { + name = "calligra-poppler-22.03.patch"; + url = "https://invent.kde.org/office/calligra/-/commit/236bacbe13739414e919de868283b0caf2df5d8a.patch"; + sha256 = "sha256-9DmKPCvEFy2Cs3g7350iOCF5Vrx1HL+/8jr+Tb44CyE="; + }) + (fetchpatch { + name = "calligra-poppler-22.04.patch"; + url = "https://invent.kde.org/office/calligra/-/commit/6b75bec784c9835c78993349845d8c2ef22ec3de.patch"; + sha256 = "sha256-z9/4he4x0WN2K/ZGrDAAtHF/W5X1PAtpeO6s7fgL/fA="; + }) ]; postPatch = '' substituteInPlace CMakeLists.txt \ diff --git a/pkgs/applications/office/fava/default.nix b/pkgs/applications/office/fava/default.nix index 5833e5e4adf..c702c02c147 100644 --- a/pkgs/applications/office/fava/default.nix +++ b/pkgs/applications/office/fava/default.nix @@ -24,7 +24,7 @@ python3.pkgs.buildPythonApplication rec { nativeBuildInputs = with python3.pkgs; [ setuptools-scm ]; propagatedBuildInputs = with python3.pkgs; [ - Babel + babel beancount cheroot click diff --git a/pkgs/applications/office/jameica/default.nix b/pkgs/applications/office/jameica/default.nix index 1e34b7918da..04d5108dc60 100644 --- a/pkgs/applications/office/jameica/default.nix +++ b/pkgs/applications/office/jameica/default.nix @@ -1,8 +1,8 @@ { lib, stdenv, fetchFromGitHub, makeDesktopItem, makeWrapper, ant, jdk, jre, gtk2, glib, xorg, Cocoa }: let - _version = "2.10.1"; - _build = "482"; + _version = "2.10.2"; + _build = "484"; version = "${_version}-${_build}"; swtSystem = if stdenv.hostPlatform.system == "i686-linux" then "linux" @@ -32,7 +32,7 @@ stdenv.mkDerivation rec { owner = "willuhn"; repo = "jameica"; rev = "V_${builtins.replaceStrings ["."] ["_"] _version}_BUILD_${_build}"; - sha256 = "0pzcfqsf7flzipwivpinpkfb2xisand1sfjm00wif4pyj3f4qfh1"; + sha256 = "1x9sybknzsfxp9z0pvw9dx80732ynyap57y03p7xwwjbcrnjla57"; }; # there is also a build.gradle, but it only seems to be used to vendor 3rd party libraries diff --git a/pkgs/applications/office/timeular/default.nix b/pkgs/applications/office/timeular/default.nix index aa591c225ad..e038749f44e 100644 --- a/pkgs/applications/office/timeular/default.nix +++ b/pkgs/applications/office/timeular/default.nix @@ -2,8 +2,6 @@ , fetchurl , appimageTools , libsecret -, gtk3 -, gsettings-desktop-schemas }: let diff --git a/pkgs/applications/office/tusk/default.nix b/pkgs/applications/office/tusk/default.nix index f23e88a323c..d3572067284 100644 --- a/pkgs/applications/office/tusk/default.nix +++ b/pkgs/applications/office/tusk/default.nix @@ -1,6 +1,4 @@ -{ appimageTools, fetchurl, lib, gsettings-desktop-schemas, gtk3 -, makeDesktopItem -}: +{ appimageTools, fetchurl, lib, makeDesktopItem }: let pname = "tusk"; @@ -31,7 +29,6 @@ in appimageTools.wrapType2 rec { profile = '' export LC_ALL=C.UTF-8 - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS ''; multiPkgs = null; # no 32bit needed diff --git a/pkgs/applications/office/watson/default.nix b/pkgs/applications/office/watson/default.nix index cf4fa359749..eb3f5496522 100644 --- a/pkgs/applications/office/watson/default.nix +++ b/pkgs/applications/office/watson/default.nix @@ -1,31 +1,16 @@ { lib, fetchFromGitHub, python3, installShellFiles }: -let - # Watson is currently not compatible with Click 8. See the following - # upstream issues / MRs: - # - # https://github.com/TailorDev/Watson/issues/430 - # https://github.com/TailorDev/Watson/pull/432 - # - # Workaround the issue by providing click 7 explicitly. - python = python3.override { - packageOverrides = self: super: { - # Use click 7 - click = self.callPackage ../../../development/python2-modules/click/default.nix { }; - }; - }; -in with python.pkgs; buildPythonApplication rec { - pname = "watson"; +with python3.pkgs; - # When you update Watson, please check whether the Click 7 - # workaround above can go away. - version = "2.0.1"; +buildPythonApplication rec { + pname = "watson"; + version = "2.1.0"; src = fetchFromGitHub { owner = "TailorDev"; repo = "Watson"; rev = version; - sha256 = "0radf5afyphmzphfqb4kkixahds2559nr3yaqvni4xrisdaiaymz"; + sha256 = "sha256-/AASYeMkt18KPJljAjNPRYOpg/T5xuM10LJq4LrFD0g="; }; postInstall = '' diff --git a/pkgs/applications/plasma-mobile/angelfish.nix b/pkgs/applications/plasma-mobile/angelfish.nix index 99df3f55c1d..acd3a7a8c84 100644 --- a/pkgs/applications/plasma-mobile/angelfish.nix +++ b/pkgs/applications/plasma-mobile/angelfish.nix @@ -4,6 +4,7 @@ , cmake , corrosion , extra-cmake-modules +, gcc11 , kconfig , kcoreaddons , kdbusaddons @@ -19,8 +20,8 @@ , srcs # These must be updated in tandem with package updates. -, cargoShaForVersion ? "21.08" -, cargoSha256 ? "1pbvw9hdzn3i97mahdy9y6jnjsmwmjs3lxfz7q6r9r10i8swbkak" +, cargoShaForVersion ? "22.04" +, cargoSha256 ? "RtdZMBKixC3mdHeFXY9u0pHyDv93Z8p4EVY+lz1aISM=" }: # Guard against incomplete updates. @@ -45,6 +46,7 @@ mkDerivation rec { cmake corrosion extra-cmake-modules + gcc11 # doesn't build with GCC 9 from stdenv on aarch64 ] ++ (with rustPlatform; [ cargoSetupHook rust.cargo diff --git a/pkgs/applications/plasma-mobile/audiotube.nix b/pkgs/applications/plasma-mobile/audiotube.nix index 1a1dedc7b42..f020c22b1ae 100644 --- a/pkgs/applications/plasma-mobile/audiotube.nix +++ b/pkgs/applications/plasma-mobile/audiotube.nix @@ -1,8 +1,8 @@ { lib , mkDerivation -, fetchpatch , extra-cmake-modules +, gcc11 , kcoreaddons , kcrash @@ -16,16 +16,9 @@ mkDerivation rec { pname = "audiotube"; - patches = [ - # Fix compatibility with ytmusicapi 0.19.1 - (fetchpatch { - url = "https://invent.kde.org/plasma-mobile/audiotube/-/commit/734caa02805988200f923b88d1590b3f7dac8ac2.patch"; - sha256 = "0zq4f0w84dv0630bpvmqkfmhxbvibr2fxhzy6d2mnf098028gzyd"; - }) - ]; - nativeBuildInputs = [ extra-cmake-modules + gcc11 # doesn't build with GCC 9 from stdenv on aarch64 python3Packages.wrapPython python3Packages.pybind11 ]; @@ -37,13 +30,11 @@ mkDerivation rec { kirigami2 qtmultimedia qtquickcontrols2 - python3Packages.youtube-dl - python3Packages.ytmusicapi - ]; + ] ++ pythonPath; - pythonPath = [ - python3Packages.youtube-dl - python3Packages.ytmusicapi + pythonPath = with python3Packages; [ + yt-dlp + ytmusicapi ]; preFixup = '' diff --git a/pkgs/applications/plasma-mobile/default.nix b/pkgs/applications/plasma-mobile/default.nix index 10c1f1d0e9b..9e0cf1443e2 100644 --- a/pkgs/applications/plasma-mobile/default.nix +++ b/pkgs/applications/plasma-mobile/default.nix @@ -73,9 +73,11 @@ let krecorder = callPackage ./krecorder.nix {}; ktrip = callPackage ./ktrip.nix {}; kweather = callPackage ./kweather.nix {}; + neochat = callPackage ./neochat.nix {}; plasma-dialer = callPackage ./plasma-dialer.nix {}; plasma-phonebook = callPackage ./plasma-phonebook.nix {}; plasma-settings = callPackage ./plasma-settings.nix {}; + plasmatube = callPackage ./plasmatube.nix {}; spacebar = callPackage ./spacebar.nix {}; }; diff --git a/pkgs/applications/plasma-mobile/fetch.sh b/pkgs/applications/plasma-mobile/fetch.sh index 14995aeb2b7..3a3d5b18a53 100644 --- a/pkgs/applications/plasma-mobile/fetch.sh +++ b/pkgs/applications/plasma-mobile/fetch.sh @@ -1 +1 @@ -WGET_ARGS=( https://download.kde.org/stable/plasma-mobile/21.08/ -A '*.tar.xz' ) +WGET_ARGS=( https://download.kde.org/stable/plasma-mobile/22.04/ -A '*.tar.xz' ) diff --git a/pkgs/applications/plasma-mobile/kasts.nix b/pkgs/applications/plasma-mobile/kasts.nix index 370cba7e2ea..793fd5c9bda 100644 --- a/pkgs/applications/plasma-mobile/kasts.nix +++ b/pkgs/applications/plasma-mobile/kasts.nix @@ -10,9 +10,12 @@ , kcoreaddons , ki18n , kirigami2 +, networkmanager-qt +, qtkeychain , qtmultimedia , qtquickcontrols2 , syndication +, taglib }: let @@ -37,9 +40,12 @@ mkDerivation rec { kcoreaddons ki18n kirigami2 - qtquickcontrols2 + networkmanager-qt + qtkeychain qtmultimedia + qtquickcontrols2 syndication + taglib ]; preFixup = '' diff --git a/pkgs/applications/plasma-mobile/krecorder.nix b/pkgs/applications/plasma-mobile/krecorder.nix index c41413be884..35d38af566c 100644 --- a/pkgs/applications/plasma-mobile/krecorder.nix +++ b/pkgs/applications/plasma-mobile/krecorder.nix @@ -5,6 +5,7 @@ , extra-cmake-modules , kconfig +, kcoreaddons , ki18n , kirigami2 , qtmultimedia @@ -21,6 +22,7 @@ mkDerivation rec { buildInputs = [ kconfig + kcoreaddons ki18n kirigami2 qtmultimedia diff --git a/pkgs/applications/networking/instant-messengers/neochat/default.nix b/pkgs/applications/plasma-mobile/neochat.nix index a8e73ad1098..8147c4fb760 100644 --- a/pkgs/applications/networking/instant-messengers/neochat/default.nix +++ b/pkgs/applications/plasma-mobile/neochat.nix @@ -1,6 +1,5 @@ { mkDerivation , lib -, fetchFromGitLab , pkg-config , cmake , cmark @@ -28,15 +27,6 @@ mkDerivation rec { pname = "neochat"; - version = "22.02"; - - src = fetchFromGitLab { - domain = "invent.kde.org"; - owner = "network"; - repo = pname; - rev = "v${version}"; - sha256 = "sha256-7EBnHuwpyJ/bGrCldZHWOwcnJWDIDaNWZXHkCYkOTjs="; - }; nativeBuildInputs = [ cmake extra-cmake-modules pkg-config ]; @@ -64,7 +54,7 @@ mkDerivation rec { ]; meta = with lib; { - description = "A client for matrix, the decentralized communication protocol."; + description = "A client for matrix, the decentralized communication protocol"; homepage = "https://apps.kde.org/en/neochat"; license = licenses.gpl3Only; maintainers = with maintainers; [ peterhoeg ]; diff --git a/pkgs/applications/plasma-mobile/plasma-dialer.nix b/pkgs/applications/plasma-mobile/plasma-dialer.nix index eb71c497084..1a30977aba9 100644 --- a/pkgs/applications/plasma-mobile/plasma-dialer.nix +++ b/pkgs/applications/plasma-mobile/plasma-dialer.nix @@ -4,6 +4,7 @@ , cmake , extra-cmake-modules +, callaudiod , kcontacts , kcoreaddons , kdbusaddons @@ -12,12 +13,11 @@ , knotifications , kpeople , libphonenumber -, libpulseaudio -, libqofono +, modemmanager-qt , protobuf -, pulseaudio-qt +, qtfeedback +, qtmpris , qtquickcontrols2 -, telepathy }: mkDerivation rec { @@ -29,6 +29,7 @@ mkDerivation rec { ]; buildInputs = [ + callaudiod kcontacts kcoreaddons kdbusaddons @@ -37,12 +38,11 @@ mkDerivation rec { knotifications kpeople libphonenumber - libpulseaudio - libqofono + modemmanager-qt protobuf # Needed by libphonenumber - pulseaudio-qt + qtfeedback + qtmpris qtquickcontrols2 - telepathy ]; meta = with lib; { diff --git a/pkgs/applications/plasma-mobile/plasma-settings.nix b/pkgs/applications/plasma-mobile/plasma-settings.nix index bcd04dadca2..039f2d674b3 100644 --- a/pkgs/applications/plasma-mobile/plasma-settings.nix +++ b/pkgs/applications/plasma-mobile/plasma-settings.nix @@ -11,6 +11,8 @@ , kdbusaddons , ki18n , kitemmodels +, modemmanager-qt +, networkmanager-qt , plasma-framework }: @@ -29,6 +31,8 @@ mkDerivation rec { kdbusaddons ki18n kitemmodels + modemmanager-qt + networkmanager-qt plasma-framework ]; diff --git a/pkgs/applications/plasma-mobile/plasmatube.nix b/pkgs/applications/plasma-mobile/plasmatube.nix new file mode 100644 index 00000000000..894af98b6d1 --- /dev/null +++ b/pkgs/applications/plasma-mobile/plasmatube.nix @@ -0,0 +1,41 @@ +{ lib +, mkDerivation +, cmake +, extra-cmake-modules +, gst_all_1 +, kcoreaddons +, kdeclarative +, ki18n +, kirigami2 +, qtmultimedia +, qtquickcontrols2 +}: + +mkDerivation { + pname = "plasmatube"; + + nativeBuildInputs = [ + extra-cmake-modules + ]; + + buildInputs = [ + kcoreaddons + kdeclarative + ki18n + kirigami2 + qtmultimedia + qtquickcontrols2 + ] ++ (with gst_all_1; [ + gst-plugins-bad + gst-plugins-base + gst-plugins-good + gstreamer + ]); + + meta = { + description = "Youtube player powered by an invidious server"; + homepage = "https://invent.kde.org/plasma-mobile/plasmatube"; + license = lib.licenses.gpl3Plus; + maintainers = with lib.maintainers; [ dotlambda ]; + }; +} diff --git a/pkgs/applications/plasma-mobile/spacebar.nix b/pkgs/applications/plasma-mobile/spacebar.nix index 8d566550108..24e2f6f4715 100644 --- a/pkgs/applications/plasma-mobile/spacebar.nix +++ b/pkgs/applications/plasma-mobile/spacebar.nix @@ -11,8 +11,10 @@ , kpeople , libphonenumber , libqofono +, modemmanager-qt , protobuf -, telepathy +, qcoro +, qtquickcontrols2 }: mkDerivation rec { @@ -30,9 +32,10 @@ mkDerivation rec { knotifications kpeople libphonenumber - libqofono + modemmanager-qt protobuf # Needed by libphonenumber - telepathy + qcoro + qtquickcontrols2 ]; meta = with lib; { diff --git a/pkgs/applications/plasma-mobile/srcs.nix b/pkgs/applications/plasma-mobile/srcs.nix index 06b551a94cf..e7da4d7b0f4 100644 --- a/pkgs/applications/plasma-mobile/srcs.nix +++ b/pkgs/applications/plasma-mobile/srcs.nix @@ -4,155 +4,187 @@ { alligator = { - version = "21.08"; + version = "22.04"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/21.08/alligator-21.08.tar.xz"; - sha256 = "1dhwfwd1v5wmx3sldpygb79kz87j13wd0arhlkm94z1whsixan0q"; - name = "alligator-21.08.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.04/alligator-22.04.tar.xz"; + sha256 = "1f2s0ay4qr7ylqnx8d1fawwi4h15gza2d4dsvrww1gm8ar1miqwc"; + name = "alligator-22.04.tar.xz"; }; }; angelfish = { - version = "21.08"; + version = "22.04"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/21.08/angelfish-21.08.tar.xz"; - sha256 = "1gzvlha159bw767mj8lisn89592j4j4dazzfws3v4anddjh60xnh"; - name = "angelfish-21.08.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.04/angelfish-22.04.tar.xz"; + sha256 = "169bhkymfxcs93injzp86cvcdhv78pl4dfsscjahlh9c1g5lsbqa"; + name = "angelfish-22.04.tar.xz"; }; }; audiotube = { - version = "21.08"; + version = "22.04"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/21.08/audiotube-21.08.tar.xz"; - sha256 = "14h4xna9v70lmp7cfpvdnz0f5a4gwgj0q3byccmawm38xsv15v8c"; - name = "audiotube-21.08.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.04/audiotube-22.04.tar.xz"; + sha256 = "0x9xmlfz39ac15c4rbg33sl1bbjmglxgz39flmrvrrw9h2m62s2x"; + name = "audiotube-22.04.tar.xz"; }; }; calindori = { - version = "21.08"; + version = "22.04"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/21.08/calindori-21.08.tar.xz"; - sha256 = "08s16a8skh02n8ygqwryxpzczj5aqr5k58aijaz2gzx45m7ym31b"; - name = "calindori-21.08.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.04/calindori-22.04.tar.xz"; + sha256 = "1zinhlflrx230yymlfxvm98dvvq1yig3r49bq61fmyrzq6fdfv60"; + name = "calindori-22.04.tar.xz"; }; }; kalk = { - version = "21.08"; + version = "22.04"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/21.08/kalk-21.08.tar.xz"; - sha256 = "0xzrahpz47yajalsfmpzmavxjwmr4bgljwyz2dhxdg40ryjxdy23"; - name = "kalk-21.08.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.04/kalk-22.04.tar.xz"; + sha256 = "0aaqcb7jkkqypawfkzjnqglzyni17064d0mhch8g7q0qm5izvap8"; + name = "kalk-22.04.tar.xz"; }; }; kasts = { - version = "21.08"; + version = "22.04"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/21.08/kasts-21.08.tar.xz"; - sha256 = "10v6icxwv46nihzbdi0n2w71bsg7l166z7jf9rb7vf2mjh1gqavn"; - name = "kasts-21.08.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.04/kasts-22.04.tar.xz"; + sha256 = "0c60wp0i6l7ji13ap69lh21vpdq09h2nmqpzjlrwlbjqbhhx7lsh"; + name = "kasts-22.04.tar.xz"; }; }; kclock = { - version = "21.08"; + version = "22.04"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/21.08/kclock-21.08.tar.xz"; - sha256 = "1zq0fxlwd7l3b6dgfqsmv1x4wvhmrjz5r0a38hbd7j7pzgyix47d"; - name = "kclock-21.08.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.04/kclock-22.04.tar.xz"; + sha256 = "1ycln85ydd3qmzfadgg80zf7jlwx5yijxs1mbfmx7f1rr427qdk6"; + name = "kclock-22.04.tar.xz"; }; }; keysmith = { - version = "21.08"; + version = "22.04"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/21.08/keysmith-21.08.tar.xz"; - sha256 = "0fa8inli7cwmb75af0mr2cflng0r6k3pd6ckih6ph7szqbpg2x90"; - name = "keysmith-21.08.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.04/keysmith-22.04.tar.xz"; + sha256 = "0cx14r820mnlh75l3blc0ywxwmlinn2wakdnwl75w6i8l46k48li"; + name = "keysmith-22.04.tar.xz"; + }; + }; + khealthcertificate = { + version = "22.04"; + src = fetchurl { + url = "${mirror}/stable/plasma-mobile/22.04/khealthcertificate-22.04.tar.xz"; + sha256 = "0sr90ki42m3cbjy63rl2ay02wm089wyka0lc4ik7jaic6wb47y5d"; + name = "khealthcertificate-22.04.tar.xz"; }; }; koko = { - version = "21.08"; + version = "22.04"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/21.08/koko-21.08.tar.xz"; - sha256 = "1sqlcl871m6dlrnkkhqa3xfwix01d74d7jf94r1a3p32hqljv76p"; - name = "koko-21.08.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.04/koko-22.04.tar.xz"; + sha256 = "0i4h2brc5dqwdmj2bs7nywrz7cgqcf7nmm6yl03047vj9aah01cw"; + name = "koko-22.04.tar.xz"; }; }; kongress = { - version = "21.08"; + version = "22.04"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/21.08/kongress-21.08.tar.xz"; - sha256 = "099ds4bv4ngx21f28hxcvc17wd2nk786kydwf2h5n3mdd2mgz3ka"; - name = "kongress-21.08.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.04/kongress-22.04.tar.xz"; + sha256 = "07yb8hddxl7m1wl0z7rcwdls3k9q89zl1d271n15j1rwrsbwiyxd"; + name = "kongress-22.04.tar.xz"; }; }; krecorder = { - version = "21.08"; + version = "22.04"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/21.08/krecorder-21.08.tar.xz"; - sha256 = "1381x889h37saf6k875iqhwz5vbixrp7650smxp31r56ycrqq26i"; - name = "krecorder-21.08.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.04/krecorder-22.04.tar.xz"; + sha256 = "0d7nvq87avw4gj6whjrlmxs361r9cvzfmfsrca5f536jlazp95pg"; + name = "krecorder-22.04.tar.xz"; }; }; ktrip = { - version = "21.08"; + version = "22.04"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/21.08/ktrip-21.08.tar.xz"; - sha256 = "0ipxi3pqd7mznq3qjf9j9w3wyck85lxnr81ay6b3ricfb08ry68x"; - name = "ktrip-21.08.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.04/ktrip-22.04.tar.xz"; + sha256 = "1ijy19axc492l4naayr3d8qdjznc286105qnki8vmcaw93p48n9x"; + name = "ktrip-22.04.tar.xz"; }; }; kweather = { - version = "21.08"; + version = "22.04"; + src = fetchurl { + url = "${mirror}/stable/plasma-mobile/22.04/kweather-22.04.tar.xz"; + sha256 = "0080l00dya34d35sf6z2j3ra6lls0nafr045a9jmxv09763ydb5d"; + name = "kweather-22.04.tar.xz"; + }; + }; + neochat = { + version = "22.04"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/21.08/kweather-21.08.tar.xz"; - sha256 = "0b1zjwsakwsnh6827zjhypvb04c78gwwygr7k1cy2x3finrp5if5"; - name = "kweather-21.08.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.04/neochat-22.04.tar.xz"; + sha256 = "04i1kn52w9jjaaw8x53mksw2vzrpsq1xrq13h158c1s3q1g9jdm8"; + name = "neochat-22.04.tar.xz"; }; }; plasma-dialer = { - version = "21.08"; + version = "22.04"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/21.08/plasma-dialer-21.08.tar.xz"; - sha256 = "14vgjg0nihhm446cfrrld1l43r50dlah5xs2ypdnm68618bdc7p1"; - name = "plasma-dialer-21.08.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.04/plasma-dialer-22.04.tar.xz"; + sha256 = "0hnxasj6psplwykahhisipyvy67hfr820azixw5p820fzy11x2g4"; + name = "plasma-dialer-22.04.tar.xz"; }; }; plasma-phonebook = { - version = "21.08"; + version = "22.04"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/21.08/plasma-phonebook-21.08.tar.xz"; - sha256 = "09gr5mkwhayx6k6bhm29bmcvdlqqw8jj7gydh5fz40g9z98c84km"; - name = "plasma-phonebook-21.08.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.04/plasma-phonebook-22.04.tar.xz"; + sha256 = "14nd2yx9cf6gabb10kcaqkdn7kb96n2209qrib7daq2ldva8c9i9"; + name = "plasma-phonebook-22.04.tar.xz"; }; }; plasma-settings = { - version = "21.08"; + version = "22.04"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/21.08/plasma-settings-21.08.tar.xz"; - sha256 = "005v1gyrzl9b0k875p2wipja3l8l4awp8nl2d1jx7c28lqaspz2j"; - name = "plasma-settings-21.08.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.04/plasma-settings-22.04.tar.xz"; + sha256 = "1k40mviikpij1srar1hkg732qg14ld0176g1mpza0ysr3yr21vny"; + name = "plasma-settings-22.04.tar.xz"; + }; + }; + plasmatube = { + version = "22.04"; + src = fetchurl { + url = "${mirror}/stable/plasma-mobile/22.04/plasmatube-22.04.tar.xz"; + sha256 = "01bmxdh0aclm184j5s0kddjc7a14225bdnbkr8jlk21g9wlw8cyx"; + name = "plasmatube-22.04.tar.xz"; }; }; qmlkonsole = { - version = "21.08"; + version = "22.04.1"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/21.08/qmlkonsole-21.08.tar.xz"; - sha256 = "1p3ysf6sgiji86400523hm67rvw3znj3a7k6g6s83dxynxdh2faq"; - name = "qmlkonsole-21.08.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.04/qmlkonsole-22.04.1.tar.xz"; + sha256 = "06zfrqaag9sgihs5k93nssgm4smrs2ymh7q0fx35z7fcphngjpaw"; + name = "qmlkonsole-22.04.1.tar.xz"; }; }; spacebar = { - version = "21.08"; + version = "22.04"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/21.08/spacebar-21.08.tar.xz"; - sha256 = "1cg36iys4x7p97ywilnp2lzz1ry5a1m7jz38yh2yiw6m8wvzfqff"; - name = "spacebar-21.08.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.04/spacebar-22.04.tar.xz"; + sha256 = "0ga3symavdrq5aim924bd889b9cmv09dyplz9gcspk46w49vx3s5"; + name = "spacebar-22.04.tar.xz"; }; }; tokodon = { - version = "21.08"; + version = "22.04"; + src = fetchurl { + url = "${mirror}/stable/plasma-mobile/22.04/tokodon-22.04.tar.xz"; + sha256 = "0c9q2ax0h047xm3g5r5cn6sxfyv2lb93dahd5z3nw67bfrzwvnw2"; + name = "tokodon-22.04.tar.xz"; + }; + }; + vakzination = { + version = "22.04"; src = fetchurl { - url = "${mirror}/stable/plasma-mobile/21.08/tokodon-21.08.tar.xz"; - sha256 = "0j9zfcdss1872hv8xxrmy0jjmcz3y5kdz8gdrd6qmig5scrzjvnf"; - name = "tokodon-21.08.tar.xz"; + url = "${mirror}/stable/plasma-mobile/22.04/vakzination-22.04.tar.xz"; + sha256 = "0zadygzw4xzpwbdnb6dwjjjls1h915gp9xaf59kbfbmzwb6m4mf8"; + name = "vakzination-22.04.tar.xz"; }; }; } diff --git a/pkgs/applications/printing/pappl/default.nix b/pkgs/applications/printing/pappl/default.nix index 5df1d93f9c8..4c0bcfb4ed3 100644 --- a/pkgs/applications/printing/pappl/default.nix +++ b/pkgs/applications/printing/pappl/default.nix @@ -1,4 +1,5 @@ { lib, stdenv, fetchFromGitHub +, fetchpatch , avahi , cups , gnutls @@ -21,6 +22,14 @@ stdenv.mkDerivation rec { sha256 = "sha256-FsmR0fFb9bU9G3oUyJU1eDLcoZ6OQ2//TINlPrW6lU0="; }; + patches = [ + (fetchpatch { + name = "file-offset-bits-64-linux.patch"; + url = "https://github.com/michaelrsweet/pappl/commit/7ec4ce4331b6637c54a37943269e05d15ff6dd47.patch"; + sha256 = "sha256-x5lriopWw6Mn2qjv19flsleEzPMHU4jYWRy0y6hTL5k="; + }) + ]; + outputs = [ "out" "dev" ]; nativeBuildInputs = [ diff --git a/pkgs/applications/radio/dmrconfig/default.nix b/pkgs/applications/radio/dmrconfig/default.nix index 4bf523a8b8b..b91e9bc63a5 100644 --- a/pkgs/applications/radio/dmrconfig/default.nix +++ b/pkgs/applications/radio/dmrconfig/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub +{ lib, stdenv, fetchFromGitHub, fetchpatch , libusb1, systemd }: stdenv.mkDerivation rec { @@ -12,6 +12,15 @@ stdenv.mkDerivation rec { sha256 = "1qwix75z749628w583fwp7m7kxbj0k3g159sxb7vgqxbadqqz1ab"; }; + patches = [ + # Pull upstream fix for -fno-common toolchains. + (fetchpatch { + name = "fno-common.patch"; + url = "https://github.com/OpenRTX/dmrconfig/commit/1a6901488db26262a6b69f80b0e795864e9e8d0a.patch"; + sha256 = "03px1y95a8aspd251i1jj8ggqfjvkqby4lhn5pb7l5c1lzh6h762"; + }) + ]; + buildInputs = [ libusb1 systemd ]; diff --git a/pkgs/applications/radio/dsd/default.nix b/pkgs/applications/radio/dsd/default.nix index 46b851ec704..e885270370e 100644 --- a/pkgs/applications/radio/dsd/default.nix +++ b/pkgs/applications/radio/dsd/default.nix @@ -7,13 +7,13 @@ assert portaudioSupport -> portaudio != null; stdenv.mkDerivation rec { pname = "dsd"; - version = "2018-07-01"; + version = "2022-03-14"; src = fetchFromGitHub { owner = "szechyjs"; repo = "dsd"; - rev = "f175834e45a1a190171dff4597165b27d6b0157b"; - sha256 = "0w4r13sxvjwacdwxr326zr6p77a8p6ny0g6im574jliw5j3shlhr"; + rev = "59423fa46be8b41ef0bd2f3d2b45590600be29f0"; + sha256 = "128gvgkanvh4n5bjnzkfk419hf5fdbad94fb8d8lv67h94vfchyd"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/applications/radio/gqrx/default.nix b/pkgs/applications/radio/gqrx/default.nix index d138dd350c0..8dcc9ca65d4 100644 --- a/pkgs/applications/radio/gqrx/default.nix +++ b/pkgs/applications/radio/gqrx/default.nix @@ -9,6 +9,7 @@ , fftwFloat , alsa-lib , libjack2 +, wrapGAppsHook # drivers (optional): , rtl-sdr , hackrf @@ -36,6 +37,7 @@ gnuradio3_8Minimal.pkgs.mkDerivation rec { cmake pkg-config qt5.wrapQtAppsHook + wrapGAppsHook ]; buildInputs = [ gnuradio3_8Minimal.unwrapped.log4cpp @@ -67,6 +69,12 @@ gnuradio3_8Minimal.pkgs.mkDerivation rec { "-DLINUX_AUDIO_BACKEND=${audioBackend}" ]; + # Prevent double-wrapping, inject wrapper args manually instead. + dontWrapGApps = true; + preFixup = '' + qtWrapperArgs+=("''${gappsWrapperArgs[@]}") + ''; + meta = with lib; { description = "Software defined radio (SDR) receiver"; longDescription = '' diff --git a/pkgs/applications/radio/rtl_433/default.nix b/pkgs/applications/radio/rtl_433/default.nix index 54dfe21ce04..e04a8a907d1 100644 --- a/pkgs/applications/radio/rtl_433/default.nix +++ b/pkgs/applications/radio/rtl_433/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, cmake, pkg-config +{ lib, stdenv, fetchFromGitHub, cmake, pkg-config, fetchpatch , libusb1, rtl-sdr, soapysdr-with-plugins }: @@ -13,6 +13,12 @@ stdenv.mkDerivation rec { sha256 = "sha256-KoDKyI7KDdGSe79ZTuL9ObKnOJsqTN4wrMq+/cvQ/Xk="; }; + patches = [( fetchpatch { + name = "CVE-2022-27419"; + url = "https://github.com/merbanan/rtl_433/commit/37455483889bd1c641bdaafc493d1cc236b74904.patch"; + sha256 = "172jndh8x5nlcbx2jp5y8fgfxsawwfz95037pcjp170gf93ijy88"; + })]; + nativeBuildInputs = [ pkg-config cmake ]; buildInputs = [ libusb1 rtl-sdr soapysdr-with-plugins ]; @@ -23,7 +29,7 @@ stdenv.mkDerivation rec { description = "Decode traffic from devices that broadcast on 433.9 MHz, 868 MHz, 315 MHz, 345 MHz and 915 MHz"; homepage = "https://github.com/merbanan/rtl_433"; license = licenses.gpl2Plus; - maintainers = with maintainers; [ earldouglas ]; + maintainers = with maintainers; [ earldouglas markuskowa ]; platforms = platforms.all; }; diff --git a/pkgs/applications/radio/sdrpp/default.nix b/pkgs/applications/radio/sdrpp/default.nix index 5a993f4fc10..f2bb7920ea4 100644 --- a/pkgs/applications/radio/sdrpp/default.nix +++ b/pkgs/applications/radio/sdrpp/default.nix @@ -99,9 +99,6 @@ stdenv.mkDerivation rec { OPT_BUILD_RIGCTL_SERVER = rigctl_server; }; - CXXFLAGS = lib.optional stdenv.cc.isClang "-std=c++17"; - LDFLAGS = lib.optional stdenv.cc.isClang "-lc++fs"; - NIX_CFLAGS_COMPILE = "-fpermissive"; hardeningDisable = lib.optional stdenv.cc.isClang "format"; diff --git a/pkgs/applications/radio/splat/default.nix b/pkgs/applications/radio/splat/default.nix index 2e929ff04ef..f48394def81 100644 --- a/pkgs/applications/radio/splat/default.nix +++ b/pkgs/applications/radio/splat/default.nix @@ -49,7 +49,7 @@ stdenv.mkDerivation rec { license = licenses.gpl2Only; homepage = "https://www.qsl.net/kd2bd/splat.html"; maintainers = with maintainers; [ ehmry ]; - platforms = platforms.linux; + platforms = platforms.x86_64; }; } diff --git a/pkgs/applications/science/biology/EZminc/default.nix b/pkgs/applications/science/biology/EZminc/default.nix index a2ba038c059..6c140b03ee4 100644 --- a/pkgs/applications/science/biology/EZminc/default.nix +++ b/pkgs/applications/science/biology/EZminc/default.nix @@ -25,5 +25,6 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ bcdarwin ]; platforms = platforms.unix; license = licenses.free; + broken = true; # ITK5 compatibility issue (https://github.com/BIC-MNI/EZminc/issues/15) }; } diff --git a/pkgs/applications/science/chemistry/chemtool/default.nix b/pkgs/applications/science/chemistry/chemtool/default.nix index bf78aeb825d..37057e1c604 100644 --- a/pkgs/applications/science/chemistry/chemtool/default.nix +++ b/pkgs/applications/science/chemistry/chemtool/default.nix @@ -24,6 +24,12 @@ stdenv.mkDerivation rec { fig2dev ]; + # Workaround build on -fno-common toolchains like upstream gcc-10. + # Otherwise built fails as: + # ld: inout.o:/build/chemtool-1.6.14/ct1.h:279: multiple definition of + # `outtype'; draw.o:/build/chemtool-1.6.14/ct1.h:279: first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + preFixup = '' gappsWrapperArgs+=(--prefix PATH : "${lib.makeBinPath [ fig2dev ]}") ''; diff --git a/pkgs/applications/science/electronics/alliance/default.nix b/pkgs/applications/science/electronics/alliance/default.nix index cf135b9469a..f4333be8475 100644 --- a/pkgs/applications/science/electronics/alliance/default.nix +++ b/pkgs/applications/science/electronics/alliance/default.nix @@ -4,14 +4,14 @@ stdenv.mkDerivation rec { pname = "alliance"; - version = "unstable-2021-09-15"; + version = "unstable-2022-01-13"; src = fetchFromGitLab { domain = "gitlab.lip6.fr"; owner = "vlsi-eda"; repo = "alliance"; - rev = "5e83c92d0307cce9d599f7099fb0023f81d26d65"; - sha256 = "Vd3MTT4eKn4FMt0/F4fQUPcWq25kH0FpeGxQUOetKPY="; + rev = "ebece102e15c110fc79f1da50524c68fd9523f0c"; + hash = "sha256-NGtE3ZmN9LrgXG4NIKrp7dFRVzrKMoudlPUtYYKrZjY="; }; prePatch = "cd alliance/src"; diff --git a/pkgs/applications/science/logic/alt-ergo/default.nix b/pkgs/applications/science/logic/alt-ergo/default.nix index 096a648b4dd..0767c58bdea 100644 --- a/pkgs/applications/science/logic/alt-ergo/default.nix +++ b/pkgs/applications/science/logic/alt-ergo/default.nix @@ -17,7 +17,7 @@ in let alt-ergo-lib = ocamlPackages.buildDunePackage rec { pname = "alt-ergo-lib"; inherit version src useDune2; - configureFlags = pname; + configureFlags = [ pname ]; nativeBuildInputs = [ which ]; buildInputs = with ocamlPackages; [ dune-configurator ]; propagatedBuildInputs = with ocamlPackages; [ num ocplib-simplex stdlib-shims zarith ]; @@ -26,7 +26,7 @@ let alt-ergo-lib = ocamlPackages.buildDunePackage rec { let alt-ergo-parsers = ocamlPackages.buildDunePackage rec { pname = "alt-ergo-parsers"; inherit version src useDune2; - configureFlags = pname; + configureFlags = [ pname ]; nativeBuildInputs = [ which ocamlPackages.menhir ]; propagatedBuildInputs = [ alt-ergo-lib ] ++ (with ocamlPackages; [ camlzip psmt2-frontend ]); }; in @@ -35,7 +35,7 @@ ocamlPackages.buildDunePackage { inherit pname version src useDune2; - configureFlags = pname; + configureFlags = [ pname ]; nativeBuildInputs = [ which ocamlPackages.menhir ]; buildInputs = [ alt-ergo-parsers ocamlPackages.cmdliner ]; diff --git a/pkgs/applications/science/logic/easycrypt/default.nix b/pkgs/applications/science/logic/easycrypt/default.nix index 5f28ca73c4e..da4ff212e29 100644 --- a/pkgs/applications/science/logic/easycrypt/default.nix +++ b/pkgs/applications/science/logic/easycrypt/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, ocamlPackages, why3 }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, ocamlPackages, why3 }: stdenv.mkDerivation rec { pname = "easycrypt"; @@ -11,6 +11,12 @@ stdenv.mkDerivation rec { sha256 = "sha256:09rdwcj70lkamkhd895p284rfpz4bcnsf55mcimhiqncd2a21ml7"; }; + # Fix build with Why3 1.5 + patches = fetchpatch { + url = "https://github.com/EasyCrypt/easycrypt/commit/d226387432deb7f22738e1d5579346a2cbc9be7a.patch"; + sha256 = "sha256:1zvxij35fnr3h9b5wdl8ml17aqfx3a39rd4mgwmdvkapbg3pa4lm"; + }; + nativeBuildInputs = with ocamlPackages; [ dune_3 findlib diff --git a/pkgs/applications/science/logic/lean/default.nix b/pkgs/applications/science/logic/lean/default.nix index b5e5ca8723d..cbd09b2a1a8 100644 --- a/pkgs/applications/science/logic/lean/default.nix +++ b/pkgs/applications/science/logic/lean/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "lean"; - version = "3.42.0"; + version = "3.43.0"; src = fetchFromGitHub { owner = "leanprover-community"; @@ -11,8 +11,8 @@ stdenv.mkDerivation rec { # from. this is then used to check whether an olean file should be # rebuilt. don't use a tag as rev because this will get replaced into # src/githash.h.in in preConfigure. - rev = "b35d4695da88139a9168f2ad7acf0782e66dc4f0"; - sha256 = "02rpigw6lnyjw8ccrlp2mcvswawkhl5y6kqa3zq76qp1fdjqjrbp"; + rev = "bfce34363b0efe86e93e3fe75de76ab3740c772d"; + sha256 = "100mb003zkgrv1wd2agbk41aipk3j78k8zcjbj7pv9ixh02c7ss8"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/applications/science/logic/why3/default.nix b/pkgs/applications/science/logic/why3/default.nix index 0f3dab8038e..8917135b2c8 100644 --- a/pkgs/applications/science/logic/why3/default.nix +++ b/pkgs/applications/science/logic/why3/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { pname = "why3"; - version = "1.4.1"; + version = "1.5.0"; src = fetchurl { url = "https://why3.gitlabpages.inria.fr/releases/${pname}-${version}.tar.gz"; - sha256 = "sha256:1rqyypzlvagrn43ykl0c5wxyvnry5fl1ykn3xcvlzgghk96yq3jq"; + sha256 = "sha256:0qjh49pyqmg3xi09fn4lyzz23i6h18y9sgc8ayscvx3bwr3vcqhr"; }; buildInputs = with ocamlPackages; [ diff --git a/pkgs/applications/science/logic/why3/with-provers.nix b/pkgs/applications/science/logic/why3/with-provers.nix index ae0acb1e525..739064bb616 100644 --- a/pkgs/applications/science/logic/why3/with-provers.nix +++ b/pkgs/applications/science/logic/why3/with-provers.nix @@ -27,6 +27,6 @@ stdenv.mkDerivation { installPhase = '' mkdir -p $out/bin - makeWrapper ${why3}/bin/why3 $out/bin/why3 --add-flags "--extra-config $out/share/why3/why3.conf" + makeWrapper ${why3}/bin/why3 $out/bin/why3 --add-flags "--config $out/share/why3/why3.conf" ''; } diff --git a/pkgs/applications/science/logic/zchaff/default.nix b/pkgs/applications/science/logic/zchaff/default.nix new file mode 100644 index 00000000000..5fd73a8def8 --- /dev/null +++ b/pkgs/applications/science/logic/zchaff/default.nix @@ -0,0 +1,27 @@ +{ lib, clangStdenv, fetchurl }: + +clangStdenv.mkDerivation rec { + pname = "zchaff"; + version = "2004.5.13"; + + src = fetchurl { + url = "https://www.princeton.edu/~chaff/zchaff/zchaff.${version}.tar.gz"; + sha256 = "sha256-IgOdb2KsFbRV3gPvIPkHa71ixnYRxyx91vt7m0jzIAw="; + }; + + patches = [ ./sat_solver.patch ]; + makeFlags = [ "CC=${clangStdenv.cc.targetPrefix}c++" ]; + installPhase= '' + runHook preInstall + install -Dm755 -t $out/bin zchaff + runHook postInstall + ''; + + meta = with lib; { + homepage = "https://www.princeton.edu/~chaff/zchaf"; + description = "Accelerated SAT Solver from Princeton"; + license = licenses.mit; + maintainers = with maintainers; [ siraben ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/applications/science/logic/zchaff/sat_solver.patch b/pkgs/applications/science/logic/zchaff/sat_solver.patch new file mode 100644 index 00000000000..2a84ba18de2 --- /dev/null +++ b/pkgs/applications/science/logic/zchaff/sat_solver.patch @@ -0,0 +1,12 @@ +diff --git a/sat_solver.cpp b/sat_solver.cpp +index e191881..07c0926 100644 +--- a/sat_solver.cpp ++++ b/sat_solver2.cpp +@@ -43,6 +43,7 @@ + #include <vector> + #include <dirent.h> + #include "SAT.h" ++#include <cstring> + + using namespace std; + diff --git a/pkgs/applications/science/math/R/default.nix b/pkgs/applications/science/math/R/default.nix index f91d72ff3f6..d1b1199686f 100644 --- a/pkgs/applications/science/math/R/default.nix +++ b/pkgs/applications/science/math/R/default.nix @@ -14,11 +14,11 @@ assert (!blas.isILP64) && (!lapack.isILP64); stdenv.mkDerivation rec { pname = "R"; - version = "4.1.3"; + version = "4.2.0"; src = fetchurl { url = "https://cran.r-project.org/src/base/R-${lib.versions.major version}/${pname}-${version}.tar.gz"; - sha256 = "sha256-Ff9bMzxhCUBgsqUunB2OxVzELdAp45yiKr2qkJUm/tY="; + sha256 = "sha256-OOq3cZt60JU4jwaqCQxaKyAnkZRd5g0+K7DqsfUJdIg="; }; dontUseImakeConfigure = true; @@ -31,6 +31,7 @@ stdenv.mkDerivation rec { patches = [ ./no-usr-local-search-paths.patch + ./test-reg-packages.patch ]; # Test of the examples for package 'tcltk' fails in Darwin sandbox. See: @@ -90,7 +91,7 @@ stdenv.mkDerivation rec { postFixup = "echo ${which} > $out/nix-support/undetected-runtime-dependencies"; doCheck = true; - preCheck = "export TZ=CET; bin/Rscript -e 'sessionInfo()'"; + preCheck = "export HOME=$TMPDIR; export TZ=CET; bin/Rscript -e 'sessionInfo()'"; enableParallelBuilding = true; diff --git a/pkgs/applications/science/math/R/test-reg-packages.patch b/pkgs/applications/science/math/R/test-reg-packages.patch new file mode 100644 index 00000000000..0125565a799 --- /dev/null +++ b/pkgs/applications/science/math/R/test-reg-packages.patch @@ -0,0 +1,15 @@ +Upper bounds shifts due to extra warnings re. internet connectivity. + +diff --git a/tests/reg-packages.R b/tests/reg-packages.R +index c9962ce..a40b0fa 100644 +--- a/tests/reg-packages.R ++++ b/tests/reg-packages.R +@@ -260,7 +260,7 @@ stopifnot(exprs = { + (lenN <- length(print(iN <- grep("^[1-9][0-9]:", tlines)))) >= 2 + iN - iw == seq_len(lenN) # these (3) lines come immediately after 'Warning', + ## and "related" to the some 'missing .. paren' above: +- 8 <= print(iw - i) & iw - i <= 20 # see ~14 ++ 8 <= print(iw - i) & iw - i <= 22 # see ~14 + }) ## failed in R <= 4.1.1 + + diff --git a/pkgs/applications/science/math/eukleides/default.nix b/pkgs/applications/science/math/eukleides/default.nix index 0c3ef25909b..507fa081529 100644 --- a/pkgs/applications/science/math/eukleides/default.nix +++ b/pkgs/applications/science/math/eukleides/default.nix @@ -32,6 +32,12 @@ lib.fix (eukleides: stdenv.mkDerivation rec { --replace '$(SHARE_DIR)/texmf' "$tex" ''; + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: eukleides_build/triangle.o:(.bss+0x28): multiple definition of `A'; + # eukleides_build/quadrilateral.o:(.bss+0x18): first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + preInstall = '' mkdir -p $out/bin ''; diff --git a/pkgs/applications/science/math/lrcalc/default.nix b/pkgs/applications/science/math/lrcalc/default.nix index 96eb7796451..90ee50c6828 100644 --- a/pkgs/applications/science/math/lrcalc/default.nix +++ b/pkgs/applications/science/math/lrcalc/default.nix @@ -1,18 +1,17 @@ { lib, stdenv , fetchFromBitbucket -, fetchpatch , autoreconfHook }: stdenv.mkDerivation rec { - version = "1.2"; + version = "2.1"; pname = "lrcalc"; src = fetchFromBitbucket { owner = "asbuch"; repo = "lrcalc"; rev = "lrcalc-${version}"; - sha256 = "1c12d04jdyxkkav4ak8d1aqrv594gzihwhpxvc6p9js0ry1fahss"; + sha256 = "0s3amf3z75hnrjyszdndrvk4wp5p630dcgyj341i6l57h43d1p4k"; }; doCheck = true; @@ -21,15 +20,6 @@ stdenv.mkDerivation rec { autoreconfHook ]; - patches = [ - # Fix include syntax: - # For private includes, use `#include "..."` instead of `#include <...>` - (fetchpatch { - url = "https://bitbucket.org/asbuch/lrcalc/commits/226981a0/raw/"; - sha256 = "02kaqx5s3l642rhh28kn2wg9wr098vzpknxyl4pv627lqa3lv9vm"; - }) - ]; - meta = with lib; { description = "Littlewood-Richardson calculator"; homepage = "http://math.rutgers.edu/~asbuch/lrcalc/"; diff --git a/pkgs/applications/science/math/mxnet/default.nix b/pkgs/applications/science/math/mxnet/default.nix index 8353226cefe..abff55413ce 100644 --- a/pkgs/applications/science/math/mxnet/default.nix +++ b/pkgs/applications/science/math/mxnet/default.nix @@ -40,6 +40,7 @@ stdenv.mkDerivation rec { buildInputs = [ opencv3 gtest blas.provider ] ++ lib.optional stdenv.cc.isGNU gomp ++ lib.optional stdenv.cc.isClang llvmPackages.openmp + # FIXME: when cuda build is fixed, remove nvidia_x11, and use /run/opengl-driver/lib ++ lib.optionals cudaSupport [ cudatoolkit nvidia_x11 ] ++ lib.optional cudnnSupport cudnn; @@ -78,5 +79,7 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ abbradar ]; license = licenses.asl20; platforms = platforms.unix; + # Build failures when linking mxnet_unit_tests: https://gist.github.com/6d17447ee3557967ec52c50d93b17a1d + broken = cudaSupport; }; } diff --git a/pkgs/applications/science/math/primecount/default.nix b/pkgs/applications/science/math/primecount/default.nix new file mode 100644 index 00000000000..993092c4653 --- /dev/null +++ b/pkgs/applications/science/math/primecount/default.nix @@ -0,0 +1,51 @@ +{ lib +, stdenv +, fetchFromGitHub +, cmake +, primesieve +}: + +stdenv.mkDerivation rec { + pname = "primecount"; + version = "7.3"; + + src = fetchFromGitHub { + owner = "kimwalisch"; + repo = "primecount"; + rev = "v${version}"; + hash = "sha256-hxnn1uiGSB6XRC7yK+SXTwTsJfjhemWXsMNhhL7Ghek="; + }; + + nativeBuildInputs = [ cmake ]; + + buildInputs = [ primesieve ]; + + cmakeFlags = [ + "-DBUILD_LIBPRIMESIEVE=ON" + "-DBUILD_PRIMECOUNT=ON" + "-DBUILD_SHARED_LIBS=ON" + "-DBUILD_STATIC_LIBS=OFF" + "-DBUILD_TESTS=ON" + ]; + + meta = with lib; { + homepage = "https://github.com/kimwalisch/primecount"; + description = "Fast prime counting function implementations"; + longDescription = '' + primecount is a command-line program and C/C++ library that counts the + primes below an integer x ≤ 10^31 using highly optimized implementations + of the combinatorial prime counting algorithms. + + primecount includes implementations of all important combinatorial prime + counting algorithms known up to this date all of which have been + parallelized using OpenMP. primecount contains the first ever open source + implementations of the Deleglise-Rivat algorithm and Xavier Gourdon's + algorithm (that works). primecount also features a novel load balancer + that is shared amongst all implementations and that scales up to hundreds + of CPU cores. primecount has already been used to compute several prime + counting function world records. + ''; + license = licenses.bsd2; + inherit (primesieve.meta) maintainers platforms; + }; +} diff --git a/pkgs/applications/science/math/primesieve/default.nix b/pkgs/applications/science/math/primesieve/default.nix new file mode 100644 index 00000000000..c57e2d71f1e --- /dev/null +++ b/pkgs/applications/science/math/primesieve/default.nix @@ -0,0 +1,36 @@ +{ lib +, stdenv +, fetchFromGitHub +, cmake +}: + +stdenv.mkDerivation rec { + pname = "primesieve"; + version = "7.9"; + + src = fetchFromGitHub { + owner = "kimwalisch"; + repo = "primesieve"; + rev = "v${version}"; + hash = "sha256-lwT+adKFoNI125y5FuJMovtMh8sFi9oqMLYGLabzrCI="; + }; + + nativeBuildInputs = [ cmake ]; + + meta = with lib; { + homepage = "https://primesieve.org/"; + description = "Fast C/C++ prime number generator"; + longDescription = '' + primesieve is a command-line program and C/C++ library for quickly + generating prime numbers. It is very cache efficient, it detects your + CPU's L1 & L2 cache sizes and allocates its main data structures + accordingly. It is also multi-threaded by default, it uses all available + CPU cores whenever possible i.e. if sequential ordering is not + required. primesieve can generate primes and prime k-tuplets up to 264. + ''; + license = licenses.bsd2; + maintainers = teams.sage.members ++ + (with maintainers; [ abbradar AndersonTorres ]); + platforms = platforms.unix; + }; +} diff --git a/pkgs/applications/science/math/sage/default.nix b/pkgs/applications/science/math/sage/default.nix index 70e24e2608d..44ae4041121 100644 --- a/pkgs/applications/science/math/sage/default.nix +++ b/pkgs/applications/science/math/sage/default.nix @@ -48,6 +48,12 @@ let logo64 = "${sage-src}/src/doc/common/themes/sage/static/sageicon.png"; }; + jupyter-kernel-specs = pkgs.jupyter-kernel.create { + definitions = pkgs.jupyter-kernel.default // { + sagemath = jupyter-kernel-definition; + }; + }; + three = callPackage ./threejs-sage.nix { }; # A bash script setting various environment variables to tell sage where @@ -72,8 +78,7 @@ let # The documentation for sage, building it takes a lot of ram. sagedoc = callPackage ./sagedoc.nix { - inherit sage-with-env; - inherit python3 maxima; + inherit sage-with-env jupyter-kernel-specs; }; # sagelib with added wrappers and a dependency on sage-tests to make sure thet tests were run. @@ -167,6 +172,6 @@ let in # A wrapper around sage that makes sure sage finds its docs (if they were build). callPackage ./sage.nix { - inherit sage-tests sage-with-env sagedoc jupyter-kernel-definition; + inherit sage-tests sage-with-env sagedoc jupyter-kernel-specs; inherit withDoc requireSageTests; } diff --git a/pkgs/applications/science/math/sage/patches/Only-test-external-software-when-all-of-sage-is.patch b/pkgs/applications/science/math/sage/patches/Only-test-external-software-when-all-of-sage-is.patch deleted file mode 100644 index a478f50d92e..00000000000 --- a/pkgs/applications/science/math/sage/patches/Only-test-external-software-when-all-of-sage-is.patch +++ /dev/null @@ -1,46 +0,0 @@ -diff --git a/src/sage/doctest/control.py b/src/sage/doctest/control.py -index 01f32fb8e4..4d83dc7b47 100644 ---- a/src/sage/doctest/control.py -+++ b/src/sage/doctest/control.py -@@ -1253,6 +1253,7 @@ class DocTestController(SageObject): - - self.log("Using --optional=" + self._optional_tags_string()) - available_software._allow_external = self.options.optional is True or 'external' in self.options.optional -+ available_software._autodetect_safe = self.options.optional is True or 'sage' in self.options.optional - self.log("Features to be detected: " + ','.join(available_software.detectable())) - self.add_files() - self.expand_files_into_sources() -diff --git a/src/sage/doctest/external.py b/src/sage/doctest/external.py -index 84dae19ea5..badc61466e 100644 ---- a/src/sage/doctest/external.py -+++ b/src/sage/doctest/external.py -@@ -409,6 +409,7 @@ class AvailableSoftware(object): - [] - """ - self._allow_external = True -+ self._autodetect_safe = True - # For multiprocessing of doctests, the data self._seen should be - # shared among subprocesses. Thus we use Array class from the - # multiprocessing module. -@@ -430,6 +431,8 @@ class AvailableSoftware(object): - sage: 'internet' in available_software # random, optional - internet - True - """ -+ if not self._autodetect_safe: -+ return False - try: - idx = self._indices[item] - except KeyError: -diff --git a/src/sage/features/sagemath.py b/src/sage/features/sagemath.py -index 433338766d..233623b14a 100644 ---- a/src/sage/features/sagemath.py -+++ b/src/sage/features/sagemath.py -@@ -12,7 +12,7 @@ class sagemath_doc_html(StaticFile): - - EXAMPLES:: - -- sage: from sage.features.sagemath import sagemath_doc_html -+ sage: from sage.features.sagemath import sagemath_doc_html # optional - sagemath_doc_html - sage: sagemath_doc_html().is_present() # optional - sagemath_doc_html - FeatureTestResult('sagemath_doc_html', True) - """ diff --git a/pkgs/applications/science/math/sage/patches/configurationpy-error-verbose.patch b/pkgs/applications/science/math/sage/patches/configurationpy-error-verbose.patch index e687281ad1a..ca01eba29a2 100644 --- a/pkgs/applications/science/math/sage/patches/configurationpy-error-verbose.patch +++ b/pkgs/applications/science/math/sage/patches/configurationpy-error-verbose.patch @@ -13,7 +13,7 @@ index 67d7d2accf..18279581e2 100644 - True + sage: print(output) + sage...[False, True] -+ sage...Exiting Sage ... ++ ... """ #***************************************************************************** diff --git a/pkgs/applications/science/math/sage/patches/docutils-0.18.1-deprecation.patch b/pkgs/applications/science/math/sage/patches/docutils-0.18.1-deprecation.patch index 94e0488e21e..0a19e7af104 100644 --- a/pkgs/applications/science/math/sage/patches/docutils-0.18.1-deprecation.patch +++ b/pkgs/applications/science/math/sage/patches/docutils-0.18.1-deprecation.patch @@ -1,11 +1,11 @@ diff --git a/src/sage/misc/sagedoc.py b/src/sage/misc/sagedoc.py -index 4c56aea078..e51a77ae8a 100644 +index 08c4225b87..3a9bbe4ed0 100644 --- a/src/sage/misc/sagedoc.py +++ b/src/sage/misc/sagedoc.py @@ -1402,6 +1402,8 @@ class _sage_doc: sage: identity_matrix.__doc__ in browse_sage_doc(identity_matrix, 'rst') True - sage: browse_sage_doc(identity_matrix, 'html', False) # optional - sphinx + sage: browse_sage_doc(identity_matrix, 'html', False) # optional - sphinx sagemath_doc_html + ... + FutureWarning: The configuration setting "embed_images" will be removed in Docutils 1.2. Use "image_loading: link". '...div...File:...Type:...Definition:...identity_matrix...' diff --git a/pkgs/applications/science/math/sage/patches/sphinx-docbuild-subprocesses.patch b/pkgs/applications/science/math/sage/patches/sphinx-docbuild-subprocesses.patch index 1ff081b25e0..3e7e37508ff 100644 --- a/pkgs/applications/science/math/sage/patches/sphinx-docbuild-subprocesses.patch +++ b/pkgs/applications/science/math/sage/patches/sphinx-docbuild-subprocesses.patch @@ -1,10 +1,10 @@ diff --git a/src/sage_docbuild/__init__.py b/src/sage_docbuild/__init__.py -index 8a5c1a19d2..21fd192642 100644 +index b12d56a3c9..df9d949ed1 100644 --- a/src/sage_docbuild/__init__.py +++ b/src/sage_docbuild/__init__.py -@@ -89,27 +89,6 @@ def builder_helper(type): +@@ -88,30 +88,6 @@ def builder_helper(type): """ - Returns a function which builds the documentation for + Return a function which builds the documentation for output type ``type``. - - TESTS: @@ -19,10 +19,13 @@ index 8a5c1a19d2..21fd192642 100644 - ....: raise BaseException("abort pool operation") - sage: original_runsphinx, sage_docbuild.sphinxbuild.runsphinx = sage_docbuild.sphinxbuild.runsphinx, raiseBaseException - +- sage: from sage.misc.temporary_file import tmp_dir +- sage: os.environ['SAGE_DOC'] = tmp_dir() +- sage: sage.env.var('SAGE_DOC') # random - sage: from sage_docbuild import builder_helper, build_ref_doc - sage: from sage_docbuild import _build_many as build_many - sage: helper = builder_helper("html") -- sage: try: +- sage: try: # optional - sagemath_doc_html - ....: build_many(build_ref_doc, [("docname", "en", "html", {})]) - ....: except Exception as E: - ....: "Non-exception during docbuild: abort pool operation" in str(E) @@ -30,7 +33,7 @@ index 8a5c1a19d2..21fd192642 100644 """ def f(self, *args, **kwds): output_dir = self._output_dir(type) -@@ -131,10 +110,9 @@ def builder_helper(type): +@@ -139,10 +115,9 @@ def builder_helper(type): logger.debug(build_command) # Run Sphinx with Sage's special logger @@ -44,10 +47,10 @@ index 8a5c1a19d2..21fd192642 100644 if ABORT_ON_ERROR: raise diff --git a/src/sage_docbuild/sphinxbuild.py b/src/sage_docbuild/sphinxbuild.py -index d917c3e9d4..551cc8028a 100644 +index a39c99ffe9..73be823684 100644 --- a/src/sage_docbuild/sphinxbuild.py +++ b/src/sage_docbuild/sphinxbuild.py -@@ -327,3 +327,8 @@ def runsphinx(): +@@ -330,3 +330,8 @@ def runsphinx(): sys.stderr = saved_stderr sys.stdout.flush() sys.stderr.flush() diff --git a/pkgs/applications/science/math/sage/python-modules/sage-docbuild.nix b/pkgs/applications/science/math/sage/python-modules/sage-docbuild.nix index 1766cec3e35..b0f40bf0658 100644 --- a/pkgs/applications/science/math/sage/python-modules/sage-docbuild.nix +++ b/pkgs/applications/science/math/sage/python-modules/sage-docbuild.nix @@ -2,6 +2,7 @@ , buildPythonPackage , sage-src , sphinx +, jupyter-sphinx }: buildPythonPackage rec { @@ -11,6 +12,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ sphinx + jupyter-sphinx ]; preBuild = '' diff --git a/pkgs/applications/science/math/sage/sage-env.nix b/pkgs/applications/science/math/sage/sage-env.nix index cdff1e8477a..4c22470de91 100644 --- a/pkgs/applications/science/math/sage/sage-env.nix +++ b/pkgs/applications/science/math/sage/sage-env.nix @@ -186,7 +186,7 @@ writeTextFile rec { export SAGE_EXTCODE='${sagelib.src}/src/sage/ext_data' # for find_library - export DYLD_LIBRARY_PATH="${lib.makeLibraryPath [stdenv.cc.libc singular]}''${DYLD_LIBRARY_PATH:+:}$DYLD_LIBRARY_PATH" + export DYLD_LIBRARY_PATH="${lib.makeLibraryPath [stdenv.cc.libc singular giac]}''${DYLD_LIBRARY_PATH:+:}$DYLD_LIBRARY_PATH" ''; } // { # equivalent of `passthru`, which `writeTextFile` doesn't support lib = sagelib; diff --git a/pkgs/applications/science/math/sage/sage-src.nix b/pkgs/applications/science/math/sage/sage-src.nix index b230b0d42a0..95da9b26e54 100644 --- a/pkgs/applications/science/math/sage/sage-src.nix +++ b/pkgs/applications/science/math/sage/sage-src.nix @@ -58,30 +58,19 @@ let ); in stdenv.mkDerivation rec { - version = "9.5"; + version = "9.6"; pname = "sage-src"; src = fetchFromGitHub { owner = "sagemath"; repo = "sage"; rev = version; - sha256 = "sha256-uOsLpsGpcIGs8Xr82X82MElnTB2E908gytyNJ8WVD5w="; + sha256 = "sha256-QY8Yga3hD1WhSCtA2/PVry8hHlMmC31J8jCBFtWgIU0="; }; # Patches needed because of particularities of nix or the way this is packaged. # The goal is to upstream all of them and get rid of this list. nixPatches = [ - # Since https://trac.sagemath.org/ticket/32174, some external features are - # marked as "safe" and get auto-detected, in which case the corresponding - # optional tests are executed. We disable auto-detection of safe features if - # we are doctesting with an "--optional" argument which does not include - # "sage", because tests from autodetected features expect context provided - # by running basic sage tests. This is necessary to test sagemath_doc_html - # separately. See https://trac.sagemath.org/ticket/26110 for a related - # upstream discussion (from the time when Sage still had optional py2/py3 - # tags). - ./patches/Only-test-external-software-when-all-of-sage-is.patch - # Fixes a potential race condition which can lead to transient doctest failures. ./patches/fix-ecl-race.patch @@ -120,81 +109,13 @@ stdenv.mkDerivation rec { # https://trac.sagemath.org/ticket/32959 ./patches/linbox-1.7-upgrade.patch - # https://trac.sagemath.org/ticket/33170 - (fetchSageDiff { - base = "9.6.beta5"; - name = "ipython-8.1-update.patch"; - rev = "4d2b53f1541375861310af3a7f7109c1c2ed475d"; - sha256 = "sha256-ELda/VBzsQH7NdFas69fQ35QPUoJCeLx/gxT1j7qGR8="; - }) - - # https://trac.sagemath.org/ticket/32968 - (fetchSageDiff { - base = "9.5"; - name = "sphinx-4.3-update.patch"; - rev = "fc84f82f52b6f05f512cb359ec7c100f93cf8841"; - sha256 = "sha256-bBbfdcnw/9LUOlY8rHJRbFJEdMXK4shosqTNaobTS1Q="; - }) - - # https://trac.sagemath.org/ticket/33189 - (fetchSageDiff { - base = "9.5"; - name = "arb-2.22-update.patch"; - rev = "53532ddd4e2dc92469c1590ebf0c40f8f69bf579"; - sha256 = "sha256-6SoSBvIlqvNwZV3jTB6uPdUtaWIOeNmddi2poK/WvGs="; - }) - - # TODO: This will not be necessary when Sphinx 4.4.1 is released, - # since some warnings introduced in 4.4.0 will be disabled by then - # (https://github.com/sphinx-doc/sphinx/pull/10126). - # https://trac.sagemath.org/ticket/33272 - (fetchSageDiff { - base = "9.5"; - name = "sphinx-4.4-warnings.patch"; - rev = "97d7958bed441cf2ccc714d88f83d3a8426bc085"; - sha256 = "sha256-y1STE0oxswnijGCsBw8eHWWqpmT1XMznIfA0vvX9pFA="; - }) - # adapted from https://trac.sagemath.org/ticket/23712#comment:22 ./patches/tachyon-renamed-focallength.patch - # https://trac.sagemath.org/ticket/33336 - (fetchSageDiff { - base = "9.6.beta2"; - name = "scipy-1.8-update.patch"; - rev = "9c8235e44ffb509efa8a3ca6cdb55154e2b5066d"; - sha256 = "sha256-bfc4ljNOxVnhlmxIuNbjbKl4vJXYq2tlF3Z8bbC8PWw="; - }) - - # https://trac.sagemath.org/ticket/33495 - (fetchSageDiff { - base = "9.6.beta5"; - name = "networkx-2.7-update.patch"; - rev = "8452003846a7303100847d8d0ed642fc642c11d6"; - sha256 = "sha256-A/XMouPlc2sjFp30L+56fBGJXydS2EtzfPOV98FCDqI="; - }) - - # https://trac.sagemath.org/ticket/33226 - (fetchSageDiff { - base = "9.6.beta0"; - name = "giac-1.7.0-45-update.patch"; - rev = "33ea2adf01e9e2ce9f1e33779f0b1ac0d9d1989c"; - sha256 = "sha256-DOyxahf3+IaYdkgmAReNDCorRzMgO8+yiVrJ5TW1km0="; - }) - - # https://trac.sagemath.org/ticket/33398 - (fetchSageDiff { - base = "9.6.beta4"; - name = "sympy-1.10-update.patch"; - rev = "6b7c3a28656180e42163dc10f7b4a571b93e5f27"; - sha256 = "sha256-fnUyM2yjHkCykKRfzQQ4glcUYmCS/fYzDzmCf0nuebk="; - # The patch contains a whitespace change to a file that didn't exist in Sage 9.5. - excludes = [ "build/*" "src/sage/manifolds/vector_bundle_fiber_element.py" ]; - }) - # docutils 0.18.1 now triggers Sphinx warnings. tolerate them for - # now, because patching Sphinx is not feasible. - # https://github.com/sphinx-doc/sphinx/issues/9777#issuecomment-1104481271 + # now, because patching Sphinx is not feasible. remove when Sphinx + # 5.0 hits nixpkgs. + # https://github.com/sphinx-doc/sphinx/pull/10372 ./patches/docutils-0.18.1-deprecation.patch ]; diff --git a/pkgs/applications/science/math/sage/sage.nix b/pkgs/applications/science/math/sage/sage.nix index 96122fba5ab..78fd8d598d0 100644 --- a/pkgs/applications/science/math/sage/sage.nix +++ b/pkgs/applications/science/math/sage/sage.nix @@ -2,8 +2,7 @@ , makeWrapper , sage-tests , sage-with-env -, jupyter-kernel-definition -, jupyter-kernel +, jupyter-kernel-specs , sagedoc , withDoc , requireSageTests @@ -12,14 +11,6 @@ # A wrapper that makes sure sage finds its docs (if they were build) and the # jupyter kernel spec. -let - # generate kernel spec + default kernels - kernel-specs = jupyter-kernel.create { - definitions = jupyter-kernel.default // { - sagemath = jupyter-kernel-definition; - }; - }; -in stdenv.mkDerivation rec { version = src.version; pname = "sage"; @@ -43,7 +34,7 @@ stdenv.mkDerivation rec { --set SAGE_DOC_SRC_OVERRIDE "${src}/src/doc" ${ lib.optionalString withDoc "--set SAGE_DOC_OVERRIDE ${sagedoc}/share/doc/sage" } \ - --prefix JUPYTER_PATH : "${kernel-specs}" + --prefix JUPYTER_PATH : "${jupyter-kernel-specs}" ''; doInstallCheck = withDoc; @@ -58,7 +49,7 @@ stdenv.mkDerivation rec { quicktest = sage-tests.override { longTests = false; timeLimit = 600; }; # as many tests as possible in ~10m doc = sagedoc; lib = sage-with-env.env.lib; - kernelspec = jupyter-kernel-definition; + kernelspec = jupyter-kernel-specs.definition.sagemath; }; meta = with lib; { diff --git a/pkgs/applications/science/math/sage/sagedoc.nix b/pkgs/applications/science/math/sage/sagedoc.nix index 489fc2edfe5..650b6d3b141 100644 --- a/pkgs/applications/science/math/sage/sagedoc.nix +++ b/pkgs/applications/science/math/sage/sagedoc.nix @@ -1,10 +1,7 @@ { stdenv , sage-with-env , python3 -, maxima -, tachyon -, jmol -, cddlib +, jupyter-kernel-specs }: stdenv.mkDerivation rec { @@ -12,30 +9,7 @@ stdenv.mkDerivation rec { pname = "sagedoc"; src = sage-with-env.env.lib.src; - - # Building the documentation has many dependencies, because all documented - # modules are imported and because matplotlib is used to produce plots. - buildInputs = [ - sage-with-env.env.lib - python3 - maxima - tachyon - jmol - cddlib - ] ++ (with python3.pkgs; [ - sage-docbuild - psutil - future - sphinx - scipy - sympy - matplotlib - pillow - networkx - ipykernel - ipywidgets - jupyter-client - ]); + strictDeps = true; unpackPhase = '' export SAGE_DOC_OVERRIDE="$PWD/share/doc/sage" @@ -59,10 +33,15 @@ stdenv.mkDerivation rec { OUTPUT="$OUTPUT_DIR/options.txt" ${sage-with-env}/bin/sage -advanced > "$OUTPUT" - ${sage-with-env}/bin/sage --docbuild \ + # jupyter-sphinx calls the sagemath jupyter kernel during docbuild + export JUPYTER_PATH=${jupyter-kernel-specs} + + # sage --docbuild unsets JUPYTER_PATH, so we call sage_docbuild directly + # https://trac.sagemath.org/ticket/33650#comment:32 + ${sage-with-env}/bin/sage --python3 -m sage_docbuild \ --mathjax \ --no-pdf-links \ - all html + all html < /dev/null ''; installPhase = '' @@ -83,6 +62,10 @@ stdenv.mkDerivation rec { doCheck = true; checkPhase = '' - ${sage-with-env}/bin/sage -t --optional=sagemath_doc_html --all + # sagemath_doc_html tests assume sage tests are being run, so we + # compromise: we run standard tests, but only on files containing + # relevant tests. as of Sage 9.6, there are only 4 such files. + grep -PRl "#.*optional.*sagemath_doc_html" ${src}/src/sage{,_docbuild} | \ + xargs ${sage-with-env}/bin/sage -t --optional=sage,sagemath_doc_html ''; } diff --git a/pkgs/applications/science/math/sage/sagelib.nix b/pkgs/applications/science/math/sage/sagelib.nix index 92eae35688f..8f864d13692 100644 --- a/pkgs/applications/science/math/sage/sagelib.nix +++ b/pkgs/applications/science/math/sage/sagelib.nix @@ -67,7 +67,9 @@ , pillow , ipykernel , networkx -, sphinx # TODO: this is in setup.cfg, bug should we override it? +, ptyprocess +, lrcalc-python +, sphinx # TODO: this is in setup.cfg, should we override it? }: assert (!blas.isILP64) && (!lapack.isILP64); @@ -157,6 +159,8 @@ buildPythonPackage rec { networkx jupyter-client ipywidgets + ptyprocess + lrcalc-python sphinx ]; @@ -188,7 +192,7 @@ buildPythonPackage rec { # Sage tests already catch any relevant API breakage. # according to the discussion at https://trac.sagemath.org/ticket/33520, # upper bounds will be less noisy starting from Sage 9.6. - sed -i 's/==2.1.0rc1/>=2.1.1/' ../gmpy2/install-requires.txt + sed -i 's/==0.5.1/>=0.5.1/' ../ptyprocess/install-requires.txt sed -i 's/, <[^, ]*//' ../*/install-requires.txt for infile in src/*.m4; do diff --git a/pkgs/applications/science/math/wolfram-engine/default.nix b/pkgs/applications/science/math/wolfram-engine/default.nix index 8b531b2c885..cf9364ffac1 100644 --- a/pkgs/applications/science/math/wolfram-engine/default.nix +++ b/pkgs/applications/science/math/wolfram-engine/default.nix @@ -101,7 +101,7 @@ stdenv.mkDerivation rec { # Fix the installation script patchShebangs MathInstaller substituteInPlace MathInstaller \ - --replace "`hostname`" "" \ + --replace '`hostname`' "" \ --replace "chgrp" "# chgrp" \ --replace "chown" ": # chown" diff --git a/pkgs/applications/science/misc/root/5.nix b/pkgs/applications/science/misc/root/5.nix index 40a5412e7af..84443645865 100644 --- a/pkgs/applications/science/misc/root/5.nix +++ b/pkgs/applications/science/misc/root/5.nix @@ -104,6 +104,7 @@ stdenv.mkDerivation rec { "-Drpath=ON" "-DCMAKE_INSTALL_LIBDIR=lib" "-DCMAKE_INSTALL_INCLUDEDIR=include" + "-DCMAKE_CXX_FLAGS=-std=c++11" "-Dalien=OFF" "-Dbonjour=OFF" "-Dcastor=OFF" diff --git a/pkgs/applications/science/misc/snakemake/default.nix b/pkgs/applications/science/misc/snakemake/default.nix index 66acf07f8e4..4132bd0fa96 100644 --- a/pkgs/applications/science/misc/snakemake/default.nix +++ b/pkgs/applications/science/misc/snakemake/default.nix @@ -5,14 +5,14 @@ python3.pkgs.buildPythonApplication rec { pname = "snakemake"; - version = "7.6.2"; + version = "7.7.0"; format = "setuptools"; src = fetchFromGitHub { owner = "snakemake"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-mIl5c+HR2kqgJzbLVTQjJlf4Ca/+Icqg9G49yIUyipc="; + hash = "sha256-KAnilLq7hZy5IU8d95D9sHSGfqibAvUAW3bRH/JwGnw="; }; propagatedBuildInputs = with python3.pkgs; [ diff --git a/pkgs/applications/science/physics/crystfel/0002-fix-ftbfs-with-gcc-10.patch b/pkgs/applications/science/physics/crystfel/0002-fix-ftbfs-with-gcc-10.patch new file mode 100644 index 00000000000..ddd91aec9a6 --- /dev/null +++ b/pkgs/applications/science/physics/crystfel/0002-fix-ftbfs-with-gcc-10.patch @@ -0,0 +1,43 @@ +Description: Fixing argument mismatches in Fortran code, addressing #957430. +Author: Andrius Merkys <merkys@debian.org> +Forwarded: ccp4-dev@dl.ac.uk +--- a/fortran/pack_f.f ++++ b/fortran/pack_f.f +@@ -106,7 +106,7 @@ + endif + 10 continue + filnarray(len(filn) + 1) = 0 +- call pack_wordimage_f(data, x, y, filnarray) ++ call pack_longimage_f(data, x, y, filnarray) + return + end + +@@ -138,7 +138,7 @@ + endif + 10 continue + filnarray(len(filn) + 1) = 0 +- call v2pack_wordimage_f(data, x, y, filnarray) ++ call v2pack_longimage_f(data, x, y, filnarray) + return + end + +--- a/fortran/lgglib.f ++++ b/fortran/lgglib.f +@@ -1236,7 +1236,7 @@ + B3(2) = XYZ(2) * CELL(2) + B3(3) = XYZ(3) * CELL(3) + C +- CALL matmult(3,3,3,1,ORTH,B3,XYZ,B1) ++ CALL matmult(3,3,3,1,ORTH,B3,XYZ) + END + c + c +@@ -1274,7 +1274,7 @@ + B3(1) = XYZ(1) + B3(2) = XYZ(2) + B3(3) = XYZ(3) +- CALL matmult(3,3,3,1,ORTH,B3,XYZ,B1) ++ CALL matmult(3,3,3,1,ORTH,B3,XYZ) + END + character*80 function getnam(filnam) + character*(*) filnam diff --git a/pkgs/applications/science/physics/crystfel/default.nix b/pkgs/applications/science/physics/crystfel/default.nix new file mode 100644 index 00000000000..85b18eb82fd --- /dev/null +++ b/pkgs/applications/science/physics/crystfel/default.nix @@ -0,0 +1,226 @@ +{ lib +, stdenv +, fetchurl +, fetchFromGitHub +, cmake +, lz4 +, bzip2 +, gfortran +, m4 +, hdf5 +, gsl +, slurm +, unzip +, makeWrapper +, meson +, git +, ninja +, eigen +, pkg-config +, wrapGAppsHook +, flex +, bison +, doxygen +, opencl-headers +, ncurses +, msgpack +, fftw +, zeromq +, ocl-icd +, gtk3 +, gdk-pixbuf +, argp-standalone +, memorymappingHook +, withGui ? true +, withBitshuffle ? true +}: + +let + libccp4 = stdenv.mkDerivation rec { + pname = "libccp4"; + version = "6.5.1"; + src = fetchurl { + # Original mirror, now times out + # url = "ftp://ftp.ccp4.ac.uk/opensource/${pname}-${version}.tar.gz"; + url = "https://deb.debian.org/debian/pool/main/libc/${pname}/${pname}_${version}.orig.tar.gz"; + sha256 = "1rfvjliny29vy5bdi6rrjaw9hhhhh72pw536xwvqipqcjlylf2r8"; + }; + nativeBuildInputs = [ gfortran m4 ]; + buildInputs = [ hdf5 gsl ]; + + configureFlags = [ "FFLAGS=-fallow-argument-mismatch" ]; + + # libccp4 tries to read syminfo.lib by looking at an environment variable, which hinders reproducibility. + # We hard-code this by providing a little patch and then passing the absolute path to syminfo.lib as a + # preprocessor flag. + preBuild = '' + makeFlagsArray+=(CFLAGS='-DNIX_PROVIDED_SYMOP_FILE=\"$out/share/syminfo.lib\"') + export NIX_LDFLAGS="-L${gfortran.cc}/lib64 -L${gfortran.cc}/lib $NIX_LDFLAGS"; + ''; + makeFlags = [ "CFLAGS='-DNIX_PROVIDED_SYMOP_FILE=\"${placeholder "out"}/share/syminfo.lib\"" ]; + + patches = [ + ./libccp4-use-hardcoded-syminfo-lib.patch + ./0002-fix-ftbfs-with-gcc-10.patch + ]; + }; + # This is the statically-linked, pre-built binary of mosflm. Compiling it ourselves turns out to be very difficult + # since the build process is very hard-coded for a specific machine, architecture, and libraries. + mosflm = + let + version = "7.4.0"; + src = + if stdenv.isDarwin then + fetchurl + { + url = "https://www.mrc-lmb.cam.ac.uk/mosflm/mosflm/ver${builtins.replaceStrings [ "." ] [ "" ] version}/pre-built/mosflm-osx-64-noX11.zip"; + sha256 = "1da5wimv3kl8bccp49j69vh8gi28cn7axg59lrmb38s68c618h7j"; + } + else + fetchurl { + url = "https://www.mrc-lmb.cam.ac.uk/mosflm/mosflm/ver${builtins.replaceStrings [ "." ] [ "" ] version}/pre-built/mosflm-linux-64-noX11.zip"; + sha256 = "1rqh3nprxfmnyihllw31nb8i3wfhybmsic6y7z6wn4rafyv3w4fk"; + }; + mosflmBinary = if stdenv.isDarwin then "bin/mosflm" else "mosflm-linux-64-noX11"; + in + stdenv.mkDerivation rec { + pname = "mosflm"; + + inherit version src; + + dontBuild = true; + + nativeBuildInputs = [ unzip makeWrapper ]; + + sourceRoot = "."; + + # mosflm statically links against its own libccp4, which as the syminfo.lib environment variable problem. + # Here, we circumvent it by creating a little wrapper script that calls mosflm after setting the SYMINFO variable. + installPhase = '' + mkdir -p $out/bin + cp ${mosflmBinary} $out/bin/mosflm-raw + makeWrapper $out/bin/mosflm-raw $out/bin/mosflm --set SYMINFO ${libccp4}/share/syminfo.lib --add-flags -n + ''; + }; + + xgandalf = stdenv.mkDerivation rec { + pname = "xgandalf"; + version = "c15afa2381d5f87d4aefcc8181a15b4a6fd3a955"; + src = fetchurl { + url = "https://gitlab.desy.de/thomas.white/${pname}/-/archive/${version}/${pname}-${version}.tar.gz"; + sha256 = "11i1w57a3rpnb4x5y4n8d3iffn5m9w1zydl69syzljdk3aqg2pv8"; + }; + + nativeBuildInputs = [ meson pkg-config ninja ]; + buildInputs = [ eigen ]; + }; + + pinkIndexer = stdenv.mkDerivation rec { + pname = "pinkindexer"; + version = "8a828788f8272a89d484b00afbd2500c2c1ff974"; + src = fetchurl { + url = "https://gitlab.desy.de/thomas.white/${pname}/-/archive/${version}/${pname}-${version}.tar.gz"; + sha256 = "1mkgf1xd91ay0z0632kzxm0z3wcxf0cayjvs6a3znds72dkhfsyh"; + }; + + nativeBuildInputs = [ meson pkg-config ninja ]; + buildInputs = [ eigen ]; + }; + + fdip = stdenv.mkDerivation rec { + pname = "fdip"; + version = "29da626f17f66d5c0780fc59b1eafb7c85b81dd6"; + src = fetchurl { + url = "https://gitlab.desy.de/philipp.middendorf/fdip/-/archive/${version}/fdip-${version}.tar.gz"; + sha256 = "184l76r4fgznq54rnhgjk7dg41kqdl0d1da02vr5y4cs2fyqppky"; + }; + + nativeBuildInputs = [ meson ninja pkg-config ]; + buildInputs = [ eigen ]; + }; + + hdf5-external-filter-plugins = stdenv.mkDerivation rec { + pname = "HDF5-External-Filter-Plugins"; + version = "0.1.0"; + src = fetchFromGitHub { + owner = "nexusformat"; + repo = pname; + rev = "d469f175e5273c1d488e71a6134f84088f57d39c"; + sha256 = "1jrzzh75i68ad1yrim7s1nx9wy0s49ghkziahs71mm5azprm6gh9"; + }; + + nativeBuildInputs = [ cmake ]; + buildInputs = [ hdf5 lz4 bzip2 ]; + + cmakeFlags = [ + "-DENABLE_BITSHUFFLE_PLUGIN=yes" + "-DENABLE_LZ4_PLUGIN=yes" + "-DENABLE_BZIP2_PLUGIN=yes" + ]; + }; +in +stdenv.mkDerivation rec { + pname = "crystfel"; + version = "0.10.1"; + src = fetchurl { + url = "https://www.desy.de/~twhite/${pname}/${pname}-${version}.tar.gz"; + sha256 = "0i9d5ggalic7alj97dxjdys7010kxhm2cb4lwakvigl023j8ms79"; + }; + nativeBuildInputs = [ meson pkg-config ninja flex bison doxygen opencl-headers ] + ++ lib.optionals withGui [ wrapGAppsHook ]; + buildInputs = [ + hdf5 + gsl + ncurses + msgpack + fftw + fdip + zeromq + ocl-icd + libccp4 + mosflm + pinkIndexer + xgandalf + ] ++ lib.optionals withGui [ gtk3 gdk-pixbuf ] + ++ lib.optionals stdenv.isDarwin [ + argp-standalone + memorymappingHook + ] + # slurm is not available for Darwin; when it is, remove the condition + ++ lib.optionals (!stdenv.isDarwin) [ slurm ] + # hdf5-external-filter-plugins doesn't link on Darwin + ++ lib.optionals (withBitshuffle && !stdenv.isDarwin) [ hdf5-external-filter-plugins ]; + + patches = [ ./link-to-argp-standalone-if-needed.patch ]; + + # CrystFEL calls mosflm by searching PATH for it. We could've create a wrapper script that sets the PATH, but + # we'd have to do that for every CrystFEL executable (indexamajig, crystfel, partialator). Better to just + # hard-code mosflm's path once. + postPatch = '' + sed -i -e 's#execlp("mosflm"#execl("${mosflm}/bin/mosflm"#' libcrystfel/src/indexers/mosflm.c; + ''; + + postInstall = lib.optionalString (withBitshuffle && !stdenv.isDarwin) '' + for file in $out/bin/*; do + wrapProgram $file --set HDF5_PLUGIN_PATH ${hdf5-external-filter-plugins}/lib/plugins + done + ''; + + meta = with lib; { + description = "Data processing for serial crystallography"; + longDescription = '' + CrystFEL is a suite of programs for processing (and simulating) Bragg diffraction data from "serial crystallography" experiments, often (but not always) performed using an X-ray Free-Electron Laser. Compared to rotation data, some of the particular characteristics of such data which call for a specialised software suite are: + + - The sliced, rather than integrated, measurement of intensity data. Many, if not all reflections are partially integrated. + - Many patterns (thousands) are required - high throughput is needed. + - The crystal orientations in each pattern are random and uncorrelated. + - Merging into lower symmetry point groups may require the resolution of indexing ambiguities.''; + homepage = "https://www.desy.de/~twhite/crystfel/"; + changelog = "https://www.desy.de/~twhite/crystfel/changes.html"; + downloadPage = "https://www.desy.de/~twhite/crystfel/download.html"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ pmiddend ]; + platforms = [ "x86_64-linux" "x86_64-darwin" ]; + }; + +} diff --git a/pkgs/applications/science/physics/crystfel/libccp4-use-hardcoded-syminfo-lib.patch b/pkgs/applications/science/physics/crystfel/libccp4-use-hardcoded-syminfo-lib.patch new file mode 100644 index 00000000000..9c5e1365492 --- /dev/null +++ b/pkgs/applications/science/physics/crystfel/libccp4-use-hardcoded-syminfo-lib.patch @@ -0,0 +1,30 @@ +diff --git a/ccp4/csymlib.c b/ccp4/csymlib.c +index 76bc70b..7a0c5dc 100644 +--- a/ccp4/csymlib.c ++++ b/ccp4/csymlib.c +@@ -137,24 +137,7 @@ CCP4SPG *ccp4spg_load_spacegroup(const int numspg, const int ccp4numspg, + } + + /* Open the symop file: */ +- if (!(symopfile = getenv("SYMINFO"))) { +- if (debug) +- printf("Environment variable SYMINFO not set ... guessing location of symmetry file. \n"); +- if (!(ccp4dir = getenv("CLIBD"))) { +- printf("Environment variable CLIBD not set ... big trouble! \n"); +- return NULL; +- } +- +- symopfile = ccp4_utils_malloc((strlen(ccp4dir)+22)*sizeof(char)); +- strcpy(symopfile,ccp4_utils_joinfilenames(ccp4dir,"syminfo.lib")); +- symopfile[strlen(ccp4dir)+21] = '\0'; +- ccp4printf(1," SYMINFO file set to %s \n",symopfile); +- } else { +- if (debug) { +- ccp4printf(1,"\n Spacegroup information obtained from library file: \n"); +- ccp4printf(1," Logical Name: SYMINFO Filename: %s\n\n",symopfile); +- } +- } ++ symopfile = NIX_PROVIDED_SYMOP_FILE; + + filein = fopen(symopfile,"r"); + if (!filein) { diff --git a/pkgs/applications/science/physics/crystfel/link-to-argp-standalone-if-needed.patch b/pkgs/applications/science/physics/crystfel/link-to-argp-standalone-if-needed.patch new file mode 100644 index 00000000000..707ecafde8b --- /dev/null +++ b/pkgs/applications/science/physics/crystfel/link-to-argp-standalone-if-needed.patch @@ -0,0 +1,26 @@ +diff --git a/meson.build b/meson.build +index efc9002b..070f37e4 100644 +--- a/meson.build ++++ b/meson.build +@@ -34,6 +34,12 @@ if slurmdep.found() + conf_data.set10('HAVE_SLURM', 1) + endif + ++if build_machine.system() == 'darwin' or build_machine.system() == 'freebsd' or not cc.links('#include <argp.h>\nstatic error_t parse_opt (int key, char *arg, struct argp_state *state) { argp_usage(state); return 0; }; void main() {}') ++ argpdep = cc.find_library('argp') ++else ++ argpdep = dependency('', required : false) ++endif ++ + # Find HDF5 using inbuilt Meson methods. Requires Meson >= 0.50.0 + hdf5dep = dependency('hdf5', language: 'c', required: true) + +@@ -180,7 +186,7 @@ if zmqdep.found() + endif + + executable('indexamajig', indexamajig_sources, +- dependencies: [mdep, libcrystfeldep, gsldep, pthreaddep, zmqdep], ++ dependencies: [mdep, libcrystfeldep, gsldep, pthreaddep, zmqdep, argpdep], + install: true, + install_rpath: '$ORIGIN/../lib64/:$ORIGIN/../lib') + diff --git a/pkgs/applications/science/physics/nnpdf/default.nix b/pkgs/applications/science/physics/nnpdf/default.nix new file mode 100644 index 00000000000..8674132d840 --- /dev/null +++ b/pkgs/applications/science/physics/nnpdf/default.nix @@ -0,0 +1,71 @@ +{ lib +, stdenv +, fetchFromGitHub +, fetchpatch +, cmake +, pkg-config +, apfel +, gsl +, lhapdf +, libarchive +, libyamlcpp +, python3 +, sqlite +, swig +}: + +stdenv.mkDerivation rec { + pname = "nnpdf"; + version = "4.0.4"; + + src = fetchFromGitHub { + owner = "NNPDF"; + repo = pname; + rev = version; + sha256 = "sha256-Alx4W0TkPzJBsnRXcKBrlEU6jWTnOjrji/IPk+dNCw0="; + }; + + patches = [ + (fetchpatch { + url = "https://github.com/NNPDF/nnpdf/commit/7943b62a91d3a41fd4f6366b18881d50695f4b45.diff"; + hash = "sha256-UXhTO7vZgJiY8h3bgjg7SQC0gMUQsYQ/V/PgtCEQ7VU="; + }) + ]; + + postPatch = '' + for file in CMakeLists.txt buildmaster/CMakeLists.txt; do + substituteInPlace $file \ + --replace "-march=nocona -mtune=haswell" "" + done + ''; + + nativeBuildInputs = [ + cmake + pkg-config + ]; + + buildInputs = [ + apfel + gsl + lhapdf + libarchive + libyamlcpp + python3 + python3.pkgs.numpy + sqlite + swig + ]; + + cmakeFlags = [ + "-DCOMPILE_filter=ON" + "-DCOMPILE_evolvefit=ON" + ]; + + meta = with lib; { + description = "An open-source machine learning framework for global analyses of parton distributions"; + homepage = "https://docs.nnpdf.science/"; + license = licenses.gpl3Only; + maintainers = [ maintainers.veprbl ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/applications/science/physics/xfitter/0001-src-GetChisquare.f-use-correct-types-in-calls-to-DSY.patch b/pkgs/applications/science/physics/xfitter/0001-src-GetChisquare.f-use-correct-types-in-calls-to-DSY.patch new file mode 100644 index 00000000000..dd43e17cc7a --- /dev/null +++ b/pkgs/applications/science/physics/xfitter/0001-src-GetChisquare.f-use-correct-types-in-calls-to-DSY.patch @@ -0,0 +1,50 @@ +diff --git a/CMakeLists.txt b/CMakeLists.txt +--- a/CMakeLists.txt ++++ b/CMakeLists.txt +@@ -54,21 +54,7 @@ endif() + endif() + + #Use c preprocessor with fortran +- +-if(UNIX AND NOT APPLE) +- set(CMAKE_Fortran_FLAGS "-cpp -Wno-argument-mismatch") +-endif() +- +-if(APPLE) +- set(CMAKE_Fortran_FLAGS "-cpp -fallow-argument-mismatch") +-endif() +- +- +-if (CMAKE_MAJOR_VERSION VERSION_GREATER_EQUAL "3") +-if(CMAKE_Fortran_COMPILER_VERSION VERSION_GREATER_EQUAL "10") +- set(CMAKE_Fortran_FLAGS "-cpp -fallow-argument-mismatch") +-endif() +-endif() ++set(CMAKE_Fortran_FLAGS "-cpp") + + + #For Fortran +diff --git a/src/GetChisquare.f b/src/GetChisquare.f +index b21413fe..28391bcb 100644 +--- a/src/GetChisquare.f ++++ b/src/GetChisquare.f +@@ -2418,8 +2418,8 @@ C> @Brief Interface to lapack, to dynamically allocate work arrays + integer NCovar, NDimCovar + double precision Covar(NDimCovar,NDimCovar), EigenValues(NCovar) + integer IFail +- double precision Work +- integer IWork ++ double precision Work(1) ++ integer IWork(1) + Character*80 msg + C--------------------------------------------------------------- + C Determine optimal size of the work array: +@@ -2432,7 +2432,7 @@ C Determine optimal size of the work array: + $ int(work)+1, iwork + call HF_ERRLOG(14121701,msg) + call MyDSYEVD2(NCovar,Covar,NDimCovar, EigenValues, +- $ int(work)+1,iwork,ifail) ++ $ int(work(1))+1,iwork(1),ifail) + + end + diff --git a/pkgs/applications/science/physics/xfitter/default.nix b/pkgs/applications/science/physics/xfitter/default.nix index 2be61538788..4e6f6626602 100644 --- a/pkgs/applications/science/physics/xfitter/default.nix +++ b/pkgs/applications/science/physics/xfitter/default.nix @@ -31,10 +31,10 @@ stdenv.mkDerivation rec { sha256 = "sha256-ZHIQ5hOY+k0/wmpE0o4Po+RZ4MkVMk+bK1Rc6eqwwH0="; }; - preConfigure = '' - substituteInPlace CMakeLists.txt \ - --replace "-fallow-argument-mismatch" "" - ''; + patches = [ + # Avoid need for -fallow-argument-mismatch + ./0001-src-GetChisquare.f-use-correct-types-in-calls-to-DSY.patch + ]; nativeBuildInputs = [ cmake gfortran pkg-config ]; buildInputs = diff --git a/pkgs/applications/search/recoll/default.nix b/pkgs/applications/search/recoll/default.nix index 4c8a4b7850b..78b1901be4c 100644 --- a/pkgs/applications/search/recoll/default.nix +++ b/pkgs/applications/search/recoll/default.nix @@ -35,14 +35,14 @@ mkDerivation rec { pname = "recoll"; - version = "1.31.0"; + version = "1.32.0"; src = fetchurl { url = "https://www.lesbonscomptes.com/${pname}/${pname}-${version}.tar.gz"; - sha256 = "sha256-TtkfohzeT0HO6ywCMNxrODW1DnJg5KMFkx9AbDfQt+c="; + sha256 = "sha256-4kt6g5MVZTyYLSH7q2z72nzAsU6fatC0vTebEKhSA6E="; }; - configureFlags = [ "--enable-recollq" "--disable-webkit" ] + configureFlags = [ "--enable-recollq" "--disable-webkit" "--without-systemd" ] ++ lib.optionals (!withGui) [ "--disable-qtgui" "--disable-x11mon" ] ++ (if stdenv.isLinux then [ "--with-inotify" ] else [ "--without-inotify" ]); @@ -87,6 +87,9 @@ mkDerivation rec { done '' + lib.optionalString stdenv.isLinux '' substituteInPlace $f --replace '"lyx"' '"${lib.getBin lyx}/bin/lyx"' + '' + lib.optionalString (stdenv.isDarwin && withGui) '' + mkdir $out/Applications + mv $out/bin/recoll.app $out/Applications ''; enableParallelBuilding = true; diff --git a/pkgs/applications/terminal-emulators/kitty/default.nix b/pkgs/applications/terminal-emulators/kitty/default.nix index 65e15a12cc7..efd853b82b4 100644 --- a/pkgs/applications/terminal-emulators/kitty/default.nix +++ b/pkgs/applications/terminal-emulators/kitty/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, fetchFromGitHub, python3Packages, libunistring -, harfbuzz, fontconfig, pkg-config, ncurses, imagemagick, xsel +, harfbuzz, fontconfig, pkg-config, ncurses, imagemagick , libstartup_notification, libGL, libX11, libXrandr, libXinerama, libXcursor , libxkbcommon, libXi, libXext, wayland-protocols, wayland , lcms2 @@ -157,7 +157,7 @@ buildPythonApplication rec { '' else '' cp -r linux-package/{bin,share,lib} $out ''} - wrapProgram "$out/bin/kitty" --prefix PATH : "$out/bin:${lib.makeBinPath [ imagemagick xsel ncurses.dev ]}" + wrapProgram "$out/bin/kitty" --prefix PATH : "$out/bin:${lib.makeBinPath [ imagemagick ncurses.dev ]}" installShellCompletion --cmd kitty \ --bash <("$out/bin/kitty" +complete setup bash) \ diff --git a/pkgs/applications/version-management/git-and-tools/cgit/common.nix b/pkgs/applications/version-management/git-and-tools/cgit/common.nix index d6b787315b8..0cbc04b7bcc 100644 --- a/pkgs/applications/version-management/git-and-tools/cgit/common.nix +++ b/pkgs/applications/version-management/git-and-tools/cgit/common.nix @@ -68,6 +68,8 @@ stdenv.mkDerivation { stripDebugList = [ "cgit" ]; + enableParallelBuilding = true; + meta = { inherit homepage description; license = lib.licenses.gpl2; diff --git a/pkgs/applications/version-management/git-and-tools/cgit/pink.nix b/pkgs/applications/version-management/git-and-tools/cgit/pink.nix index 75e99a06b1d..73523a2d77a 100644 --- a/pkgs/applications/version-management/git-and-tools/cgit/pink.nix +++ b/pkgs/applications/version-management/git-and-tools/cgit/pink.nix @@ -2,22 +2,22 @@ callPackage (import ./common.nix rec { pname = "cgit-pink"; - version = "1.3.0"; + version = "1.4.1"; src = fetchurl { url = "https://git.causal.agency/cgit-pink/snapshot/cgit-pink-${version}.tar.gz"; - sha256 = "sha256-oL46NWgqi1VqKNEt0QGBWNXbi2l7nOQDZy1aMivcWuM="; + sha256 = "1ma6j3r4ba5fhd47pc6xn5bmxaqr8ci2pvky9v100n1hh5n6q97i"; }; # cgit-pink is tightly coupled with git and needs a git source tree to build. # IMPORTANT: Remember to check which git version cgit-pink needs on every # version bump (look for "GIT_VER" in the top-level Makefile). gitSrc = fetchurl { - url = "mirror://kernel/software/scm/git/git-2.35.1.tar.xz"; - sha256 = "sha256-12hSjmRD9logMDYmbxylD50Se6iXUeMurTcRftkZEIA="; + url = "mirror://kernel/software/scm/git/git-2.36.1.tar.xz"; + sha256 = "0w43a35mhc2qf2gjkxjlnkf2lq8g0snf34iy5gqx2678yq7llpa0"; }; homepage = "https://git.causal.agency/cgit-pink/about/"; description = "cgit fork aiming for better maintenance"; - maintainers = with lib.maintainers; [ qyliss sternenseemann ]; + maintainers = with lib.maintainers; [ sternenseemann ]; }) {} diff --git a/pkgs/applications/version-management/git-and-tools/delta/default.nix b/pkgs/applications/version-management/git-and-tools/delta/default.nix index c1f2c281c7a..92914f45496 100644 --- a/pkgs/applications/version-management/git-and-tools/delta/default.nix +++ b/pkgs/applications/version-management/git-and-tools/delta/default.nix @@ -11,16 +11,16 @@ rustPlatform.buildRustPackage rec { pname = "delta"; - version = "0.12.1"; + version = "0.13.0"; src = fetchFromGitHub { owner = "dandavison"; repo = pname; rev = version; - sha256 = "sha256-khW+Ri+MZytMZcd2tRXhc/D6kOOhk+LP6MsS+GijjQM="; + sha256 = "sha256-5h4epV3RORZiynW1fkFLImqPunC3PZ/YzLiSrzescww="; }; - cargoSha256 = "sha256-SD1y+l86wqlJUUaG4ae4PXXSMS+4CPth3F4pLYbXMVc="; + cargoSha256 = "sha256-4dPTcrT8Gx3WfT0sauqnCSmcGE9LrgIqgHrY5l503ZA="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/applications/version-management/git-and-tools/gfold/default.nix b/pkgs/applications/version-management/git-and-tools/gfold/default.nix index ee280c6620c..d3b960208fc 100644 --- a/pkgs/applications/version-management/git-and-tools/gfold/default.nix +++ b/pkgs/applications/version-management/git-and-tools/gfold/default.nix @@ -1,28 +1,43 @@ -{ lib, fetchFromGitHub, gitMinimal, makeWrapper, rustPlatform }: +{ fetchFromGitHub +, gitMinimal +, gfold +, lib +, libiconv +, makeWrapper +, rustPlatform +, Security +, stdenv +, testVersion +}: -rustPlatform.buildRustPackage rec { +let pname = "gfold"; - version = "3.0.0"; + version = "4.0.0"; +in +rustPlatform.buildRustPackage { + inherit pname version; src = fetchFromGitHub { owner = "nickgerace"; repo = pname; rev = version; - sha256 = "0ss6vfrc6h3jlh5qilh82psd3vdnfawf1wl4cf64mfm4hm9dda63"; + sha256 = "1yh5173qhi9bd41zss9k21nm0xnr2sa918kvlyr5xvzhq47rrwz5"; }; - cargoSha256 = "09ywwgxm8l1p0jypp65zpqryjnb2g4gririf1dmqb9148dsj29x2"; + cargoSha256 = "sha256-o2fMIlj+veTmhfqi7BVpxr3520SOwWLmVS2UU83EVjo="; - nativeBuildInputs = [ makeWrapper ]; + buildInputs = lib.optionals stdenv.isDarwin [ libiconv Security ]; - postInstall = '' - wrapProgram "$out/bin/gfold" --prefix PATH : "${gitMinimal}/bin" - ''; + passthru.tests.version = testVersion { + package = gfold; + command = "gfold --version"; + inherit version; + }; meta = with lib; { - inherit (src.meta) homepage; description = - "A tool to help keep track of your Git repositories, written in Rust"; + "CLI tool to help keep track of your Git repositories, written in Rust"; + homepage = "https://github.com/nickgerace/gfold"; license = licenses.asl20; maintainers = [ maintainers.shanesveller ]; platforms = platforms.unix; diff --git a/pkgs/applications/version-management/git-and-tools/git-codereview/default.nix b/pkgs/applications/version-management/git-and-tools/git-codereview/default.nix index 90281407848..43de6287685 100644 --- a/pkgs/applications/version-management/git-and-tools/git-codereview/default.nix +++ b/pkgs/applications/version-management/git-and-tools/git-codereview/default.nix @@ -1,17 +1,22 @@ -{ lib, buildGoPackage, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub, git }: -buildGoPackage { +buildGoModule rec { pname = "git-codereview"; - version = "2020-01-15"; - goPackagePath = "golang.org/x/review"; + version = "1.0.3"; src = fetchFromGitHub { owner = "golang"; repo = "review"; - rev = "f51a73253c4da005cfdf18a036e11185c04c8ce3"; - sha256 = "0c4vsyy5zp7pngqn4q87xipndghxyw2x57dkv1kxnrffckx1s3pc"; + rev = "v${version}"; + sha256 = "sha256-Hyo2UWGlxxeSz3E73DeA0VoOnBJ1VedvpshnATJGbFo="; }; + vendorSha256 = "sha256-pQpattmS9VmO3ZIQUFn66az8GSmB4IvYhTTCFn6SUmo="; + + ldflags = [ "-s" "-w" ]; + + checkInputs = [ git ]; + meta = with lib; { description = "Manage the code review process for Git changes using a Gerrit server"; homepage = "https://golang.org/x/review/git-codereview"; diff --git a/pkgs/applications/version-management/git-and-tools/git-ignore/default.nix b/pkgs/applications/version-management/git-and-tools/git-ignore/default.nix index 5ff6d6b1f84..98da70a274e 100644 --- a/pkgs/applications/version-management/git-and-tools/git-ignore/default.nix +++ b/pkgs/applications/version-management/git-and-tools/git-ignore/default.nix @@ -4,16 +4,16 @@ with rustPlatform; buildRustPackage rec { pname = "git-ignore"; - version = "1.1.1"; + version = "1.2.0"; src = fetchFromGitHub { owner = "sondr3"; repo = pname; rev = "v${version}"; - sha256 = "sha256-bKIBPqGKiS3ey8vH2F4EoleV1H2PTOp+71d/YW3jkT0="; + sha256 = "sha256-Bfr+4zDi6QqirlqccW1jU95eb4q82ZFG9LtT2mCPYLc="; }; - cargoSha256 = "sha256-7jPNVBf5DYtE8nsh7LIywMCjU7ODZ3qFsmBie2mZ3h8="; + cargoSha256 = "sha256-ehEUI4M2IxqS6QhyqOncwP+w6IGbIlSFNIP/FEVH/JI="; nativeBuildInputs = [ pkg-config installShellFiles ]; buildInputs = [ openssl ] @@ -21,9 +21,10 @@ buildRustPackage rec { darwin.apple_sdk.frameworks.Security ]; - outputs = [ "out" "man" ]; - preFixup = '' - installManPage $releaseDir/build/git-ignore-*/out/git-ignore.1 + postInstall = '' + installManPage assets/git-ignore.1 + # There's also .elv and .ps1 completion files but I don't know where to install those + installShellCompletion assets/git-ignore.{bash,fish} --zsh assets/_git-ignore ''; meta = with lib; { diff --git a/pkgs/applications/version-management/git-and-tools/git-machete/default.nix b/pkgs/applications/version-management/git-and-tools/git-machete/default.nix index d5fc50ff3fd..070d9eab2b4 100644 --- a/pkgs/applications/version-management/git-and-tools/git-machete/default.nix +++ b/pkgs/applications/version-management/git-and-tools/git-machete/default.nix @@ -12,13 +12,13 @@ buildPythonApplication rec { pname = "git-machete"; - version = "3.9.1"; + version = "3.10.0"; src = fetchFromGitHub { owner = "virtuslab"; repo = pname; rev = "v${version}"; - sha256 = "sha256-/oX3x5F5/gV8YuRLzAviE7RM+Gen0gIypHs34iUnVOM="; + sha256 = "sha256-jZkc9YA4kE/Gr4/FRzgd0VvEjSrw5rk7DB5qH8Z5o6c="; }; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/applications/version-management/git-and-tools/git-sync/default.nix b/pkgs/applications/version-management/git-and-tools/git-sync/default.nix index 14696903542..83314802ca9 100644 --- a/pkgs/applications/version-management/git-and-tools/git-sync/default.nix +++ b/pkgs/applications/version-management/git-and-tools/git-sync/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "git-sync"; - version = "unstable-2021-07-14"; + version = "unstable-2022-03-20"; src = fetchFromGitHub { owner = "simonthum"; repo = "git-sync"; - rev = "7d3d34bf3ee2483fba00948f5b97f964b849a590"; - sha256 = "sha256-PuYREW5NBkYF1tlcLTbOI8570nvHn5ifN8OIInfNNxI="; + rev = "8466b77a38b3d5e8b4ed9e3cb1b635e475eeb415"; + sha256 = "sha256-8rCwpmHV6wgFCLzPJOKzwN5mG8uD5KIlGFwcgQD+SK4="; }; nativeBuildInputs = [ makeWrapper ]; @@ -18,6 +18,7 @@ stdenv.mkDerivation rec { installPhase = '' mkdir -p $out/bin cp -a git-* $out/bin/ + cp -a contrib/git-* $out/bin/ ''; wrapperPath = with lib; makeBinPath [ diff --git a/pkgs/applications/version-management/git-and-tools/git-workspace/default.nix b/pkgs/applications/version-management/git-and-tools/git-workspace/default.nix index 7783c28927c..a0136ba5e4d 100644 --- a/pkgs/applications/version-management/git-and-tools/git-workspace/default.nix +++ b/pkgs/applications/version-management/git-and-tools/git-workspace/default.nix @@ -7,16 +7,16 @@ rustPlatform.buildRustPackage rec { pname = "git-workspace"; - version = "0.9.0"; + version = "1.0.3"; src = fetchFromGitHub { owner = "orf"; repo = pname; rev = "v${version}"; - sha256 = "sha256-uP1sex4Hx57ZsqVG4b3809FzFB10Un48+vbwaWZ7HSg="; + sha256 = "sha256-sPvb8EKrr9ZUMV1yMTXkFYgjW+LRJwJAXoc7lrWykaI="; }; - cargoSha256 = "sha256-mkrC8uzfNpL0MQUMjcNaJf5c1wSdlBVg8AMgc/zxM6A="; + cargoSha256 = "sha256-WAoYFCJCWKFvWN8XyRBZdzjCrcR6jMp8ZztSLHDP+r0="; nativeBuildInputs = [ pkg-config ]; buildInputs = [ openssl ] diff --git a/pkgs/applications/version-management/git-and-tools/lab/default.nix b/pkgs/applications/version-management/git-and-tools/lab/default.nix index 8f4acbc3fc4..d73d1d13bde 100644 --- a/pkgs/applications/version-management/git-and-tools/lab/default.nix +++ b/pkgs/applications/version-management/git-and-tools/lab/default.nix @@ -2,18 +2,18 @@ buildGoModule rec { pname = "lab"; - version = "0.24.0"; + version = "0.25.0"; src = fetchFromGitHub { owner = "zaquestion"; repo = "lab"; rev = "v${version}"; - sha256 = "sha256-sw00D/PJaLAPHoPdJC2WYUNklIzMbc/bXt2jlQZ7E90="; + sha256 = "sha256-7AUhH2aBRpsjUzZQGE2fHDOa1k0rMUfZJqUEKZXpJuM="; }; subPackages = [ "." ]; - vendorSha256 = "sha256-FwnVMH//GwFbi+llFF6XNqrZX2hRB4r51p8TRz2vN+g="; + vendorSha256 = "sha256-ChysquNuUffcM3qaWUdqu3Av33gnKkdlotEoFKoedA0="; doCheck = false; diff --git a/pkgs/applications/version-management/git-and-tools/radicle-upstream/default.nix b/pkgs/applications/version-management/git-and-tools/radicle-upstream/default.nix index d5791f6506c..c88d0b9d386 100644 --- a/pkgs/applications/version-management/git-and-tools/radicle-upstream/default.nix +++ b/pkgs/applications/version-management/git-and-tools/radicle-upstream/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, appimageTools, gsettings-desktop-schemas, gtk3, autoPatchelfHook, zlib, fetchurl, undmg }: +{ lib, stdenv, appimageTools, autoPatchelfHook, zlib, fetchurl, undmg }: let pname = "radicle-upstream"; @@ -39,10 +39,6 @@ let linux = appimageTools.wrapType2 { inherit name src meta; - profile = '' - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS - ''; - extraInstallCommands = '' mv $out/bin/${name} $out/bin/${pname} diff --git a/pkgs/applications/version-management/gitkraken/default.nix b/pkgs/applications/version-management/gitkraken/default.nix index 8d89420607a..7ea16da243c 100644 --- a/pkgs/applications/version-management/gitkraken/default.nix +++ b/pkgs/applications/version-management/gitkraken/default.nix @@ -11,24 +11,24 @@ with lib; let curlWithGnuTls = curl.override { gnutlsSupport = true; opensslSupport = false; }; pname = "gitkraken"; - version = "8.4.0"; + version = "8.5.0"; throwSystem = throw "Unsupported system: ${stdenv.hostPlatform.system}"; srcs = { x86_64-linux = fetchzip { url = "https://release.axocdn.com/linux/GitKraken-v${version}.tar.gz"; - sha256 = "sha256-yVQILgEn67iiUUQqpQqt++cZMN5u9FT0MbNf7pFES9Y="; + sha256 = "sha256-2ox7SI5tjoXR2qrhE+S/K2GQfq0wuTduKHAEpIOoulQ="; }; x86_64-darwin = fetchzip { url = "https://release.axocdn.com/darwin/GitKraken-v${version}.zip"; - sha256 = "sha256-cTHMl5peXj52Fy2XBfKaUKLuZnPCC4XdReOiB0fbCNk="; + sha256 = "sha256-+F++2L1WYVem96y7R93aPWiWySnUrg+b1q1gIJX69yw="; }; aarch64-darwin = fetchzip { url = "https://release.axocdn.com/darwin-arm64/GitKraken-v${version}.zip"; - sha256 = "sha256-M3Y5qP0nozk5iTnEGK2+ds8/Vb/l0nhIo4LSrCWLDu8="; + sha256 = "sha256-7WD9drsE93SR53Xqz+cmrnsVd4l4SIoud/Agq32QM4M="; }; }; diff --git a/pkgs/applications/version-management/monotone/default.nix b/pkgs/applications/version-management/monotone/default.nix index 34c3e611d40..6f62a381a50 100644 --- a/pkgs/applications/version-management/monotone/default.nix +++ b/pkgs/applications/version-management/monotone/default.nix @@ -2,6 +2,7 @@ , lua, pcre, sqlite, perl, pkg-config, expect, less , bzip2, gmp, openssl , autoreconfHook, texinfo +, fetchpatch }: let @@ -33,6 +34,12 @@ stdenv.mkDerivation rec { patches = [ ./monotone-1.1-Adapt-to-changes-in-pcre-8.42.patch ./monotone-1.1-adapt-to-botan2.patch + (fetchpatch { + name = "rm-clang-float128-hack.patch"; + url = "https://github.com/7c6f434c/monotone-mirror/commit/5f01a3a9326a8dbdae7fc911b208b7c319e5f456.patch"; + revert = true; + sha256 = "0fzjdv49dx5lzvqhkvk50lkccagwx8h0bfha4a0k6l4qh36f9j7c"; + }) ]; postPatch = '' diff --git a/pkgs/applications/video/byzanz/default.nix b/pkgs/applications/video/byzanz/default.nix index 2919cb10ca3..5e60bb7fd90 100644 --- a/pkgs/applications/video/byzanz/default.nix +++ b/pkgs/applications/video/byzanz/default.nix @@ -1,13 +1,26 @@ -{ lib, stdenv, fetchgit, wrapGAppsHook, which, gnome, glib, intltool, pkg-config, libtool, cairo, gtk3, gst_all_1, xorg }: +{ lib, stdenv +, fetchgit +, wrapGAppsHook +, cairo +, glib +, gnome +, gst_all_1 +, gtk3 +, intltool +, libtool +, pkg-config +, which +, xorg +}: stdenv.mkDerivation { - version = "0.2.3.alpha"; pname = "byzanz"; + version = "unstable-2016-03-12"; src = fetchgit { url = "https://gitlab.gnome.org/Archive/byzanz"; - rev = "1875a7f6a3903b83f6b1d666965800f47db9286a"; - sha256 = "0a72fw2mxl8vdcdnzy0bwis4jk28pd7nc8qgr4vhyw5pd48dynvh"; + rev = "81235d235d12c9687897f7fc6ec0de1feaed6623"; + hash = "sha256-3DUwXCPBAmeCRlDkiPUgwNyBa6bCvC/TLguMCK3bo4E="; }; patches = [ ./add-amflags.patch ]; @@ -16,11 +29,31 @@ stdenv.mkDerivation { ./autogen.sh --prefix=$out ''; - NIX_CFLAGS_COMPILE = "-Wno-error=deprecated-declarations"; + NIX_CFLAGS_COMPILE = builtins.concatStringsSep " " [ + "-Wno-error=deprecated-declarations" + "-Wno-error=incompatible-pointer-types" + ]; nativeBuildInputs = [ pkg-config ]; - buildInputs = [ which gnome.gnome-common glib intltool libtool cairo gtk3 xorg.xwininfo xorg.libXdamage ] - ++ (with gst_all_1; [ gstreamer gst-plugins-base gst-plugins-bad gst-plugins-good gst-plugins-ugly gst-libav wrapGAppsHook ]); + buildInputs = [ + which + gnome.gnome-common + glib + intltool + libtool + cairo + gtk3 + xorg.xwininfo + xorg.libXdamage + ] ++ (with gst_all_1; [ + gstreamer + gst-plugins-base + gst-plugins-bad + gst-plugins-good + gst-plugins-ugly + gst-libav + wrapGAppsHook + ]); meta = with lib; { description = "Tool to record a running X desktop to an animation suitable for presentation in a web browser"; diff --git a/pkgs/applications/video/epgstation/default.nix b/pkgs/applications/video/epgstation/default.nix index b8919361727..1f5d23a684a 100644 --- a/pkgs/applications/video/epgstation/default.nix +++ b/pkgs/applications/video/epgstation/default.nix @@ -23,18 +23,6 @@ let sha256 = "K1cAvmqWEfS6EY4MKAtjXb388XLYHtouxNM70PWgFig="; }; - workaround-opencollective-buildfailures = stdenv.mkDerivation { - # FIXME: This should be removed when a complete fix is available - # https://github.com/svanderburg/node2nix/issues/145 - name = "workaround-opencollective-buildfailures"; - dontUnpack = true; - installPhase = '' - mkdir -p $out/bin - touch $out/bin/opencollective-postinstall - chmod +x $out/bin/opencollective-postinstall - ''; - }; - client = nodePackages.epgstation-client.override (drv: { # FIXME: remove this option if possible # @@ -49,21 +37,14 @@ let server = nodePackages.epgstation.override (drv: { inherit src; - bypassCache = false; - # This is set to false to keep devDependencies at build time. Build time # dependencies are pruned afterwards. production = false; - buildInputs = [ bash ]; - nativeBuildInputs = [ - nodejs - workaround-opencollective-buildfailures + buildInputs = (drv.buildInputs or [ ]) ++ [ bash ]; + nativeBuildInputs = (drv.nativeBuildInputs or [ ]) ++ [ makeWrapper - ] ++ (with nodePackages; [ - node-pre-gyp - node-gyp-build - ]); + ]; preRebuild = '' # Fix for not being able to connect to mysql using domain sockets. diff --git a/pkgs/applications/video/losslesscut-bin/appimage.nix b/pkgs/applications/video/losslesscut-bin/appimage.nix index e6be6f54e1d..87518479db4 100644 --- a/pkgs/applications/video/losslesscut-bin/appimage.nix +++ b/pkgs/applications/video/losslesscut-bin/appimage.nix @@ -1,4 +1,4 @@ -{ appimageTools, lib, fetchurl, gtk3, gsettings-desktop-schemas, version, sha256 }: +{ appimageTools, lib, fetchurl, version, sha256 }: let pname = "losslesscut"; @@ -21,7 +21,6 @@ in appimageTools.wrapType2 { profile = '' export LC_ALL=C.UTF-8 - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS ''; extraPkgs = ps: appimageTools.defaultFhsEnvArgs.multiPkgs ps; diff --git a/pkgs/applications/video/makemkv/default.nix b/pkgs/applications/video/makemkv/default.nix index 712ccacd7a0..2c15513d4d6 100644 --- a/pkgs/applications/video/makemkv/default.nix +++ b/pkgs/applications/video/makemkv/default.nix @@ -55,7 +55,7 @@ in mkDerivation { installPhase = '' runHook preInstall - install -Dm555 -t $out/bin out/makemkv ../makemkv-bin-${version}/bin/amd64/makemkvcon + install -Dm555 -t $out/bin out/makemkv out/mmccextr ../makemkv-bin-${version}/bin/amd64/makemkvcon install -D -t $out/lib out/lib{driveio,makemkv,mmbd}.so.* install -D -t $out/share/MakeMKV ../makemkv-bin-${version}/src/share/* install -Dm444 -t $out/share/applications ../makemkv-oss-${version}/makemkvgui/share/makemkv.desktop diff --git a/pkgs/applications/video/mkvtoolnix/default.nix b/pkgs/applications/video/mkvtoolnix/default.nix index e44471c6f85..d9a8a843693 100644 --- a/pkgs/applications/video/mkvtoolnix/default.nix +++ b/pkgs/applications/video/mkvtoolnix/default.nix @@ -117,9 +117,6 @@ stdenv.mkDerivation rec { checkPhase = phase "Check" "tests:run_unit"; - CXXFLAGS = optional stdenv.cc.isClang "-std=c++17"; - LDFLAGS = optional stdenv.cc.isClang "-lc++fs"; - dontWrapQtApps = true; postFixup = optionalString withGUI '' diff --git a/pkgs/applications/video/mpc-qt/default.nix b/pkgs/applications/video/mpc-qt/default.nix index 7c4126bb37c..9f91cc0c3c0 100644 --- a/pkgs/applications/video/mpc-qt/default.nix +++ b/pkgs/applications/video/mpc-qt/default.nix @@ -1,23 +1,16 @@ -{ lib, stdenv, mkDerivation, fetchFromGitLab, fetchpatch, pkg-config, qmake, qtx11extras, qttools, mpv }: +{ lib, stdenv, mkDerivation, fetchFromGitHub, pkg-config, qmake, qtx11extras, qttools, mpv }: mkDerivation rec { pname = "mpc-qt"; - version = "2019-06-09"; + version = "22.02"; - src = fetchFromGitLab { + src = fetchFromGitHub { owner = "mpc-qt"; repo = "mpc-qt"; - rev = "2abe6e7fc643068d50522468fe75d614861555ad"; - sha256 = "1cis8dl9pm91mpnp696zvwsfp96gkwr8jgs45anbwd7ldw78w4x5"; + rev = "v${version}"; + sha256 = "sha256-DRbNDrWnaTT4A0dRFAv9MX/MDwV/rXIw+R8fQJmVN+g="; }; - patches = [ - (fetchpatch { - url = "https://gitlab.com/mpc-qt/mpc-qt/-/commit/02f2bc7a22e863a89ba322b9acb61cf1aef23ba0.diff"; - sha256 = "0khld55i194zgi18d0wch5459lfzzkbfdbl1im8akvq8ks5xijis"; - }) - ]; - nativeBuildInputs = [ pkg-config qmake qttools ]; buildInputs = [ mpv qtx11extras ]; @@ -26,7 +19,7 @@ mkDerivation rec { meta = with lib; { description = "Media Player Classic Qute Theater"; - homepage = "https://gitlab.com/mpc-qt/mpc-qt"; + homepage = "https://mpc-qt.github.io"; license = licenses.gpl2; platforms = platforms.unix; broken = stdenv.isDarwin; diff --git a/pkgs/applications/video/screenkey/default.nix b/pkgs/applications/video/screenkey/default.nix index 4377b255fd9..f854054b3b6 100644 --- a/pkgs/applications/video/screenkey/default.nix +++ b/pkgs/applications/video/screenkey/default.nix @@ -31,7 +31,7 @@ python3.pkgs.buildPythonApplication rec { ]; propagatedBuildInputs = with python3.pkgs; [ - Babel + babel pycairo pygobject3 ]; diff --git a/pkgs/applications/virtualization/lima/default.nix b/pkgs/applications/virtualization/lima/default.nix index c937cce79b1..0ced37bb40f 100644 --- a/pkgs/applications/virtualization/lima/default.nix +++ b/pkgs/applications/virtualization/lima/default.nix @@ -8,16 +8,16 @@ buildGoModule rec { pname = "lima"; - version = "0.10.0"; + version = "0.11.0"; src = fetchFromGitHub { owner = "lima-vm"; repo = pname; rev = "v${version}"; - sha256 = "sha256-xlpNJjSBw1iL8CjbWE6v4u7Vq5PjkGv0tQKU5eRN13w="; + sha256 = "sha256-OqsLHxY7dZKN/zazeDASBt5UsQGieU5laIUeshtS55w="; }; - vendorSha256 = "sha256-uTkCi969RQ4K0ZJ2vOgqv3OJgzVVRX7b2sXNfmR6qoA="; + vendorSha256 = "sha256-0Z+SAEHFJio+N7ATiviBkLPn6cNFlhE3Dsj8CxVtf7c="; nativeBuildInputs = [ makeWrapper installShellFiles ]; diff --git a/pkgs/applications/virtualization/qemu/default.nix b/pkgs/applications/virtualization/qemu/default.nix index 9f9b0389ced..a481b50f3e1 100644 --- a/pkgs/applications/virtualization/qemu/default.nix +++ b/pkgs/applications/virtualization/qemu/default.nix @@ -103,6 +103,12 @@ stdenv.mkDerivation rec { sha256 = "sha256-gTRf9XENAfbFB3asYCXnw4OV4Af6VE1W56K2xpYDhgM="; revert = true; }) + # Workaround for upstream issue with nested virtualisation: https://gitlab.com/qemu-project/qemu/-/issues/1008 + (fetchpatch { + url = "https://gitlab.com/qemu-project/qemu/-/commit/3e4546d5bd38a1e98d4bd2de48631abf0398a3a2.diff"; + sha256 = "sha256-oC+bRjEHixv1QEFO9XAm4HHOwoiT+NkhknKGPydnZ5E="; + revert = true; + }) # make nixos tests that boot from USB more stable # https://lists.nongnu.org/archive/html/qemu-devel/2022-05/msg01484.html (fetchpatch { diff --git a/pkgs/applications/window-managers/matchbox/default.nix b/pkgs/applications/window-managers/matchbox/default.nix index 51bb3010d33..f12ed0ea0a7 100644 --- a/pkgs/applications/window-managers/matchbox/default.nix +++ b/pkgs/applications/window-managers/matchbox/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, pkg-config, libmatchbox, libX11, libXext }: +{ lib, stdenv, fetchurl, fetchpatch, pkg-config, libmatchbox, libX11, libXext }: stdenv.mkDerivation rec { pname = "matchbox"; @@ -13,6 +13,15 @@ stdenv.mkDerivation rec { sha256 = "1zyfq438b466ygcz78nvsmnsc5bhg4wcfnpxb43kbkwpyx53m8l1"; }; + patches = [ + # Pull upstream fix for -fno-common tollchains: + (fetchpatch { + name = "fno-common.patch"; + url = "https://git.yoctoproject.org/matchbox-window-manager/patch/?id=844f61069896fe3f549ab425d731c061028f697c"; + sha256 = "1md2s7q094hn4gzg21pfyz8d426y07d5rbx2icas9nvc8jj7bwfc"; + }) + ]; + meta = { description = "X window manager for non-desktop embedded systems"; homepage = "https://www.yoctoproject.org/software-item/matchbox/"; diff --git a/pkgs/applications/window-managers/oroborus/default.nix b/pkgs/applications/window-managers/oroborus/default.nix index d24abb68fb7..275db56dada 100644 --- a/pkgs/applications/window-managers/oroborus/default.nix +++ b/pkgs/applications/window-managers/oroborus/default.nix @@ -1,27 +1,54 @@ -{ lib, stdenv, fetchurl, pkg-config -, freetype, fribidi -, libSM, libICE, libXt, libXaw, libXmu -, libXext, libXft, libXpm, libXrandr -, libXrender, xorgproto, libXinerama }: +{ lib +, stdenv +, fetchurl +, freetype +, fribidi +, libICE +, libSM +, libXaw +, libXext +, libXft +, libXinerama +, libXmu +, libXpm +, libXrandr +, libXrender +, libXt +, pkg-config +, xorgproto +}: -with lib; stdenv.mkDerivation rec { - pname = "oroborus"; version = "2.0.20"; - nativeBuildInputs = [ pkg-config ]; - buildInputs = [ freetype fribidi libSM libICE libXt libXaw libXmu libXext - libXft libXpm libXrandr libXrender xorgproto libXinerama ]; - src = fetchurl { url = "mirror://debian/pool/main/o/oroborus/oroborus_${version}.tar.gz"; - sha256 = "12bvk8x8rfnymbfbwmdcrd9g8m1zxbcq7rgvfdkjr0gnpi0aa82j"; + hash = "sha256-UiClQLz2gSxnc/vlg9nqP1T0UsusVb7cqt66jDqae4k=a"; }; - meta = { + nativeBuildInputs = [ pkg-config ]; + + buildInputs = [ + freetype + fribidi + libICE + libSM + libXaw + libXext + libXft + libXinerama + libXmu + libXpm + libXrandr + libXrender + libXt + xorgproto + ]; + + meta = with lib; { + homepage = "https://web.archive.org/web/20191129172107/https://www.oroborus.org/"; description = "A really minimalistic X window manager"; - homepage = "https://www.oroborus.org/"; license = licenses.gpl2Plus; maintainers = [ maintainers.AndersonTorres ]; platforms = platforms.linux; diff --git a/pkgs/applications/window-managers/yeahwm/default.nix b/pkgs/applications/window-managers/yeahwm/default.nix index 3cf997c22c2..25a25a06ad9 100644 --- a/pkgs/applications/window-managers/yeahwm/default.nix +++ b/pkgs/applications/window-managers/yeahwm/default.nix @@ -24,6 +24,11 @@ stdenv.mkDerivation rec { prefix="${placeholder "out"}" ) ''; + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: screen.o:(.bss+0x40): multiple definition of `fg'; client.o:(.bss+0x40): first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + postInstall = '' gzip -9 --stdout yeahwm.1 > yeahwm.1.gz install -m644 yeahwm.1.gz ${placeholder "out"}/share/man/man1/ diff --git a/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-build-hook.sh b/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-build-hook.sh index 0e2650da51c..cd1c401735d 100644 --- a/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-build-hook.sh +++ b/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-build-hook.sh @@ -28,8 +28,8 @@ dotnetBuildHook() { --configuration "@buildType@" \ --no-restore \ ${versionFlag-} \ - "${dotnetBuildFlags[@]}" \ - "${dotnetFlags[@]}" + ${dotnetBuildFlags[@]} \ + ${dotnetFlags[@]} done runHook postBuild diff --git a/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-configure-hook.sh b/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-configure-hook.sh index f8ba8b8df2e..1686c15d269 100644 --- a/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-configure-hook.sh +++ b/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-configure-hook.sh @@ -20,8 +20,8 @@ dotnetConfigureHook() { -p:Deterministic=true \ --source "@nugetSource@/lib" \ ${parallelFlag-} \ - "${dotnetRestoreFlags[@]}" \ - "${dotnetFlags[@]}" + ${dotnetRestoreFlags[@]} \ + ${dotnetFlags[@]} done runHook postConfigure diff --git a/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-install-hook.sh b/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-install-hook.sh index ac9bc873ee9..fcd3e745900 100644 --- a/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-install-hook.sh +++ b/pkgs/build-support/dotnet/build-dotnet-module/hooks/dotnet-install-hook.sh @@ -15,8 +15,8 @@ dotnetInstallHook() { --configuration "@buildType@" \ --no-build \ --no-self-contained \ - "${dotnetInstallFlags[@]}" \ - "${dotnetFlags[@]}" + ${dotnetInstallFlags[@]} \ + ${dotnetFlags[@]} done if [[ "${packNupkg-}" ]]; then @@ -28,8 +28,8 @@ dotnetInstallHook() { --output "$out/share" \ --configuration "@buildType@" \ --no-build \ - "${dotnetPackFlags[@]}" \ - "${dotnetFlags[@]}" + ${dotnetPackFlags[@]} \ + ${dotnetFlags[@]} done fi diff --git a/pkgs/build-support/go/garble.nix b/pkgs/build-support/go/garble.nix index c9bcf2cec15..502aba4e64a 100644 --- a/pkgs/build-support/go/garble.nix +++ b/pkgs/build-support/go/garble.nix @@ -6,16 +6,16 @@ }: buildGoModule rec { pname = "garble"; - version = "0.5.1"; + version = "0.6.0"; src = fetchFromGitHub { owner = "burrowers"; repo = pname; rev = "v${version}"; - sha256 = "sha256-F8O/33o//yGnum9sZo1dzcvf3ifRalva6SDC36iPbDA=="; + sha256 = "sha256-VeqF1MB8knM+NtG9Y+x1g2OF7LFZRC8/c8jicGP3vpo="; }; - vendorSha256 = "sha256-iNH/iBEOTkIhVlDGfI66ZYyVjyH6WrLbUSMyONPjUc4="; + vendorSha256 = "sha256-FQMeA6VUDQa6wpvMoYsigkzukQ0dArAkysiksJWq+iY="; # Used for some of the tests. checkInputs = [git]; diff --git a/pkgs/build-support/kernel/compress-firmware-xz.nix b/pkgs/build-support/kernel/compress-firmware-xz.nix new file mode 100644 index 00000000000..56595131c89 --- /dev/null +++ b/pkgs/build-support/kernel/compress-firmware-xz.nix @@ -0,0 +1,16 @@ +{ runCommand }: + +firmware: + +runCommand "${firmware.name}-xz" {} '' + mkdir -p $out/lib + (cd ${firmware} && find lib/firmware -type d -print0) | + (cd $out && xargs -0 mkdir -v --) + (cd ${firmware} && find lib/firmware -type f -print0) | + (cd $out && xargs -0tP "$NIX_BUILD_CORES" -n1 \ + sh -c 'xz -9c -T1 -C crc32 --lzma2=dict=2MiB "${firmware}/$1" > "$1.xz"' --) + (cd ${firmware} && find lib/firmware -type l) | while read link; do + target="$(readlink "${firmware}/$link")" + ln -vs -- "''${target/^${firmware}/$out}.xz" "$out/$link.xz" + done +'' diff --git a/pkgs/build-support/kernel/modules-closure.sh b/pkgs/build-support/kernel/modules-closure.sh index 3b3a38ea1d3..74bc490eb15 100644 --- a/pkgs/build-support/kernel/modules-closure.sh +++ b/pkgs/build-support/kernel/modules-closure.sh @@ -81,8 +81,12 @@ for module in $(cat closure); do for i in $(modinfo -b $kernel --set-version "$version" -F firmware $module | grep -v '^name:'); do mkdir -p "$out/lib/firmware/$(dirname "$i")" echo "firmware for $module: $i" - cp "$firmware/lib/firmware/$i" "$out/lib/firmware/$i" 2>/dev/null \ - || echo "WARNING: missing firmware $i for module $module" + for name in "$i" "$i.xz" ""; do + [ -z "$name" ] && echo "WARNING: missing firmware $i for module $module" + if cp "$firmware/lib/firmware/$name" "$out/lib/firmware/$name" 2>/dev/null; then + break + fi + done done done diff --git a/pkgs/build-support/testers/default.nix b/pkgs/build-support/testers/default.nix index 3ab97760e72..020352836c8 100644 --- a/pkgs/build-support/testers/default.nix +++ b/pkgs/build-support/testers/default.nix @@ -9,10 +9,19 @@ version ? package.version, }: runCommand "${package.name}-test-version" { nativeBuildInputs = [ package ]; meta.timeout = 60; } '' if output=$(${command} 2>&1); then - grep -Fw "${version}" - <<< "$output" - touch $out + if grep -Fw "${version}" - <<< "$output"; then + touch $out + else + echo "Version string '${version}' not found!" >&2 + echo "The output was:" >&2 + echo "$output" >&2 + exit 1 + fi else - echo "$output" >&2 && exit 1 + echo -n ${lib.escapeShellArg command} >&2 + echo " returned a non-zero exit code." >&2 + echo "$output" >&2 + exit 1 fi ''; diff --git a/pkgs/build-support/trivial-builders.nix b/pkgs/build-support/trivial-builders.nix index bd14971fe78..57c439fc0eb 100644 --- a/pkgs/build-support/trivial-builders.nix +++ b/pkgs/build-support/trivial-builders.nix @@ -315,10 +315,10 @@ rec { allowSubstitutes = false; } '' - n=$out/bin/$name - mkdir -p "$(dirname "$n")" - mv "$codePath" code.c - $CC -x c code.c -o "$n" + n=$out/bin/$name + mkdir -p "$(dirname "$n")" + mv "$codePath" code.c + $CC -x c code.c -o "$n" ''; @@ -477,7 +477,7 @@ rec { cd $out ${lib.concatMapStrings (x: '' mkdir -p "$(dirname ${lib.escapeShellArg x.name})" - ln -s ${lib.escapeShellArg x.path} ${lib.escapeShellArg x.name} + ln -s ${lib.escapeShellArg "${x.path}"} ${lib.escapeShellArg x.name} '') entries} ''; diff --git a/pkgs/data/misc/hackage/pin.json b/pkgs/data/misc/hackage/pin.json index 3c200d6cd8c..061704e9260 100644 --- a/pkgs/data/misc/hackage/pin.json +++ b/pkgs/data/misc/hackage/pin.json @@ -1,6 +1,6 @@ { - "commit": "78324aa49909392e169c86bbfd204694523907e8", - "url": "https://github.com/commercialhaskell/all-cabal-hashes/archive/78324aa49909392e169c86bbfd204694523907e8.tar.gz", - "sha256": "15k5ag36asswwv8yazq53lkj9blnz4hzlq23cznvvk5pkjpdm0ni", - "msg": "Update from Hackage at 2022-05-05T15:07:55Z" + "commit": "2c56a18f7c408d4fd67a3667d93cab163692fc53", + "url": "https://github.com/commercialhaskell/all-cabal-hashes/archive/2c56a18f7c408d4fd67a3667d93cab163692fc53.tar.gz", + "sha256": "0yvikmygrb6gb0lv4jp00rsqnagvkrc94sgmrn1gfjlmazss77z5", + "msg": "Update from Hackage at 2022-05-14T01:13:33Z" } diff --git a/pkgs/data/themes/catppuccin-gtk/default.nix b/pkgs/data/themes/catppuccin-gtk/default.nix new file mode 100644 index 00000000000..ec8c9310024 --- /dev/null +++ b/pkgs/data/themes/catppuccin-gtk/default.nix @@ -0,0 +1,87 @@ +{ lib +, stdenvNoCC +, fetchFromGitHub +, gtk3 +, gnome-themes-extra +, gtk-engine-murrine +, sassc +, which +, tweaks ? [ ] # can be "nord" "black" "rimless". cannot mix "nord" and "black" +, size ? "standard" # can be "standard" "compact" +}: +let + validSizes = [ "standard" "compact" ]; + validTweaks = [ "nord" "black" "rimless" ]; + + unknownTweaks = lib.subtractLists validTweaks tweaks; + illegalMix = !(lib.elem "nord" tweaks) && !(lib.elem "black" tweaks); + + assertIllegal = lib.assertMsg illegalMix '' + Tweaks "nord" and "black" cannot be mixed. Tweaks: ${toString tweaks} + ''; + + assertSize = lib.assertMsg (lib.elem size validSizes) '' + You entered wrong size: ${size} + Valid sizes are: ${toString validSizes} + ''; + + assertUnknown = lib.assertMsg (unknownTweaks == [ ]) '' + You entered wrong tweaks: ${toString unknownTweaks} + Valid tweaks are: ${toString validTweaks} + ''; +in + +assert assertIllegal; +assert assertSize; +assert assertUnknown; + +stdenvNoCC.mkDerivation rec { + pname = "catppuccin-gtk"; + version = "unstable-2022-02-24"; + + src = fetchFromGitHub { + repo = "gtk"; + owner = "catppuccin"; + rev = "359c584f607c021fcc657ce77b81c181ebaff6de"; + sha256 = "sha256-AVhFw1XTnkU0hoM+UyjT7ZevLkePybBATJUMLqRytpk="; + }; + + nativeBuildInputs = [ gtk3 sassc which ]; + + buildInputs = [ gnome-themes-extra ]; + + propagatedUserEnvPkgs = [ gtk-engine-murrine ]; + + patches = [ + # Allows installing with `-t all`. Works around missing grey assets. + # https://github.com/catppuccin/gtk/issues/17 + ./grey-fix.patch + ]; + + postPatch = '' + patchShebangs --build scripts/* + substituteInPlace Makefile \ + --replace '$(shell git rev-parse --show-toplevel)' "$PWD" + substituteInPlace 'scripts/install.sh' \ + --replace '$(git rev-parse --show-toplevel)' "$PWD" + ''; + + installPhase = '' + runHook preInstall + + mkdir -p $out/share/themes + bash scripts/install.sh -d $out/share/themes -t all \ + ${lib.optionalString (size != "") "-s ${size}"} \ + ${lib.optionalString (tweaks != []) "--tweaks " + builtins.toString tweaks} + + runHook postInstall + ''; + + meta = with lib; { + description = "Soothing pastel theme for GTK3"; + homepage = "https://github.com/catppuccin/gtk"; + license = licenses.gpl3Plus; + platforms = platforms.linux; + maintainers = [ maintainers.fufexan ]; + }; +} diff --git a/pkgs/data/themes/catppuccin-gtk/grey-fix.patch b/pkgs/data/themes/catppuccin-gtk/grey-fix.patch new file mode 100644 index 00000000000..73f7d8fa65d --- /dev/null +++ b/pkgs/data/themes/catppuccin-gtk/grey-fix.patch @@ -0,0 +1,12 @@ +diff --git a/scripts/install.sh b/scripts/install.sh +index d2a2b86..bd05c93 100755 +--- a/scripts/install.sh ++++ b/scripts/install.sh +@@ -20,7 +20,7 @@ fi + SASSC_OPT="-M -t expanded" + + THEME_NAME=Catppuccin +-THEME_VARIANTS=('' '-purple' '-pink' '-red' '-orange' '-yellow' '-green' '-teal' '-grey') ++THEME_VARIANTS=('' '-purple' '-pink' '-red' '-orange' '-yellow' '-green' '-teal') + COLOR_VARIANTS=('' '-light' '-dark') + SIZE_VARIANTS=('' '-compact') diff --git a/pkgs/data/themes/mojave/default.nix b/pkgs/data/themes/mojave/default.nix index 56d7dfcf375..e8e98ab0ebf 100644 --- a/pkgs/data/themes/mojave/default.nix +++ b/pkgs/data/themes/mojave/default.nix @@ -16,6 +16,7 @@ , opacityVariants ? [] # default to all , themeVariants ? [] # default to MacOS blue , wallpapers ? false +, gitUpdater }: let @@ -29,14 +30,14 @@ lib.checkListOfEnum "${pname}: theme variants" [ "default" "blue" "purple" "pink stdenv.mkDerivation rec { inherit pname; - version = "unstable-2021-12-20"; + version = "2022-05-12"; srcs = [ (fetchFromGitHub { owner = "vinceliuice"; repo = pname; - rev = "c148646ccab382f7a2d5fdc421fc32d843cb4172"; - sha256 = "sha256-h4MSSh8cu9M81bM+WJSyl1SQ7CVth1DvjIVOUJXqpxs"; + rev = version; + sha256 = "sha256-VrrxW16J+S21qBoAeVCWs0Q6bRL1jXAK7MOBpdSMJZY="; }) ] ++ @@ -114,6 +115,8 @@ stdenv.mkDerivation rec { runHook postInstall ''; + passthru.updateScript = gitUpdater {inherit pname version; }; + meta = with lib; { description = "Mac OSX Mojave like theme for GTK based desktop environments"; homepage = "https://github.com/vinceliuice/Mojave-gtk-theme"; diff --git a/pkgs/desktops/arcan/arcan/003-freetype.patch b/pkgs/desktops/arcan/arcan/003-freetype.patch deleted file mode 100644 index e38d329b026..00000000000 --- a/pkgs/desktops/arcan/arcan/003-freetype.patch +++ /dev/null @@ -1,14 +0,0 @@ -diff -Naur source-old/src/CMakeLists.txt source-new/src/CMakeLists.txt ---- source-old/src/CMakeLists.txt 1969-12-31 21:00:01.000000000 -0300 -+++ source-new/src/CMakeLists.txt 2021-10-29 12:03:06.461399341 -0300 -@@ -317,9 +317,7 @@ - find_package(BZip2 REQUIRED QUIET) - pkg_check_modules(HARFBUZZ REQUIRED QUIET harfbuzz) - ExternalProject_Add(Freetype -- SOURCE_DIR "${CMAKE_CURRENT_BINARY_DIR}/freetype" -- UPDATE_COMMAND "" -- GIT_REPOSITORY "${EXTERNAL_SRC_DIR}/git/freetype" -+ SOURCE_DIR "${EXTERNAL_SRC_DIR}/git/freetype" - ${EXTERNAL_DEFS} - ${CMAKE_EXTERNAL_DEFS} - -DWITH_ZLIB=OFF diff --git a/pkgs/desktops/arcan/arcan/default.nix b/pkgs/desktops/arcan/arcan/default.nix index f3f4be2fcc4..a15d5ac6be9 100644 --- a/pkgs/desktops/arcan/arcan/default.nix +++ b/pkgs/desktops/arcan/arcan/default.nix @@ -48,13 +48,13 @@ stdenv.mkDerivation rec { pname = "arcan" + lib.optionalString useStaticOpenAL "-static-openal"; - version = "0.6.1"; + version = "0.6.1.1"; src = fetchFromGitHub { owner = "letoram"; repo = "arcan"; rev = version; - hash = "sha256-2do4+6KB0AAcJk22mN0IA/e/bPaeGipLjI4RSTPqLBg="; + hash = "sha256-+dJaBSKGbHOwzA26/jDyh2UF9YRwGUcysJIeAM4kvfc="; }; nativeBuildInputs = [ @@ -106,7 +106,6 @@ stdenv.mkDerivation rec { ./000-openal.patch ./001-luajit.patch ./002-libuvc.patch - ./003-freetype.patch ]; # Emulate external/git/clone.sh diff --git a/pkgs/desktops/gnome/apps/gnome-music/default.nix b/pkgs/desktops/gnome/apps/gnome-music/default.nix index 8d5f5e5f28d..19db2cdf9f0 100644 --- a/pkgs/desktops/gnome/apps/gnome-music/default.nix +++ b/pkgs/desktops/gnome/apps/gnome-music/default.nix @@ -74,6 +74,7 @@ python3.pkgs.buildPythonApplication rec { gst-plugins-good gst-plugins-bad gst-plugins-ugly + gst-libav ]); pythonPath = with python3.pkgs; [ diff --git a/pkgs/desktops/gnome/core/adwaita-icon-theme/default.nix b/pkgs/desktops/gnome/core/adwaita-icon-theme/default.nix index b3c9e1ea62a..5e36cd109e4 100644 --- a/pkgs/desktops/gnome/core/adwaita-icon-theme/default.nix +++ b/pkgs/desktops/gnome/core/adwaita-icon-theme/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, pkg-config, intltool, gnome +{ lib, stdenv, fetchurl, fetchpatch, pkg-config, autoreconfHook, intltool, gnome , iconnamingutils, gtk3, gdk-pixbuf, librsvg, hicolor-icon-theme }: stdenv.mkDerivation rec { @@ -10,12 +10,20 @@ stdenv.mkDerivation rec { sha256 = "XoW1rcje5maQD8rycbpxf33LnQoD2W2uCPnL0n4YseA="; }; + patches = [ + (fetchpatch { + name = "reduce-build-parallelism.patch"; + url = "https://gitlab.gnome.org/vcunat/adwaita-icon-theme/-/commit/27edeca7927eb2247d7385fccb3f0fd7787471e6.patch"; + sha256 = "vDWuvz5yRhtn9obTtHRp6J7gJpXDZz1cajyquPGw53I="; + }) + ]; + # For convenience, we can specify adwaita-icon-theme only in packages propagatedBuildInputs = [ hicolor-icon-theme ]; buildInputs = [ gdk-pixbuf librsvg ]; - nativeBuildInputs = [ pkg-config intltool iconnamingutils gtk3 ]; + nativeBuildInputs = [ pkg-config autoreconfHook intltool iconnamingutils gtk3 ]; dontDropIconThemeCache = true; diff --git a/pkgs/desktops/gnome/extensions/collisions.json b/pkgs/desktops/gnome/extensions/collisions.json index b389b947d94..7d3f120e867 100644 --- a/pkgs/desktops/gnome/extensions/collisions.json +++ b/pkgs/desktops/gnome/extensions/collisions.json @@ -32,6 +32,10 @@ "noannoyance@sindex.com", "noannoyance@daase.net" ], + "somafm-internet-radio": [ + "SomaFm-Radio@alireza6677.gmail.com", + "SomaFm-Radio@cajhne.gmail.com" + ], "transparent-window": [ "transparent-window@pbxqdown.github.com", "transparentwindows.mdirshad07" @@ -79,6 +83,10 @@ "noannoyance@sindex.com", "noannoyance@daase.net" ], + "somafm-internet-radio": [ + "SomaFm-Radio@alireza6677.gmail.com", + "SomaFm-Radio@cajhne.gmail.com" + ], "fuzzy-clock": [ "fuzzy-clock@keepawayfromfire.co.uk", "FuzzyClock@johngoetz" @@ -87,10 +95,6 @@ "panel-date-format@keiii.github.com", "panel-date-format@atareao.es" ], - "fullscreen-hot-corner": [ - "fullscreen-hot-corner@sorrow.about.alice.pm.me", - "fullscreen-hot-corner@richardblaha.cz" - ], "disable-unredirect-fullscreen-windows": [ "unredirect@vaina.lt", "unredirect@aunetx" @@ -133,10 +137,6 @@ "fuzzy-clock@keepawayfromfire.co.uk", "FuzzyClock@johngoetz" ], - "fullscreen-hot-corner": [ - "fullscreen-hot-corner@sorrow.about.alice.pm.me", - "fullscreen-hot-corner@richardblaha.cz" - ], "disable-unredirect-fullscreen-windows": [ "unredirect@vaina.lt", "unredirect@aunetx" @@ -167,10 +167,6 @@ "lockkeys@vaina.lt", "lockkeys@fawtytoo" ], - "fullscreen-hot-corner": [ - "fullscreen-hot-corner@sorrow.about.alice.pm.me", - "fullscreen-hot-corner@richardblaha.cz" - ], "wireguard-indicator": [ "wireguard-indicator@gregos.me", "wireguard-indicator@atareao.es" diff --git a/pkgs/desktops/gnome/extensions/dash-to-dock/default.nix b/pkgs/desktops/gnome/extensions/dash-to-dock/default.nix index 9447de1fd4e..e7afab4c9ac 100644 --- a/pkgs/desktops/gnome/extensions/dash-to-dock/default.nix +++ b/pkgs/desktops/gnome/extensions/dash-to-dock/default.nix @@ -4,19 +4,19 @@ , glib , gettext , sassc -, unstableGitUpdater +, gitUpdater }: stdenv.mkDerivation rec { pname = "gnome-shell-extension-dash-to-dock"; - version = "71+date=2022-02-23"; + version = "72"; # Temporarily switched to commit hash because stable version is buggy. src = fetchFromGitHub { owner = "micheleg"; repo = "dash-to-dock"; - rev = "6f717302747931de6bf35bc9839fb3bd946e2c2f"; - sha256 = "1J8t0R43jBbqpXyH2uVyEK+OvhrCw18WWheflqwe100="; + rev = "extensions.gnome.org-v${version}"; + sha256 = "Cds5Fc+rnvoy01GTZBS7qPh8UC9ekrNBOs+IEkDNkJw="; }; nativeBuildInputs = [ @@ -33,9 +33,10 @@ stdenv.mkDerivation rec { extensionUuid = "dash-to-dock@micxgx.gmail.com"; extensionPortalSlug = "dash-to-dock"; - updateScript = unstableGitUpdater { - stableVersion = true; - tagPrefix = "extensions.gnome.org-v"; + updateScript = gitUpdater { + pname = "gnomeExtensions.dash-to-dock"; + inherit version; + rev-prefix = "extensions.gnome.org-v"; }; }; diff --git a/pkgs/desktops/gnome/extensions/extensionRenames.nix b/pkgs/desktops/gnome/extensions/extensionRenames.nix index 9e55eb498c3..fdf82456d0d 100644 --- a/pkgs/desktops/gnome/extensions/extensionRenames.nix +++ b/pkgs/desktops/gnome/extensions/extensionRenames.nix @@ -9,9 +9,6 @@ "apps-menu@gnome-shell-extensions.gcampax.github.com" = "applications-menu"; "Applications_Menu@rmy.pobox.com" = "frippery-applications-menu"; - "fullscreen-hot-corner@sorrow.about.alice.pm.me" = "fullscreen-hot-corner"; - "fullscreen-hot-corner@richardblaha.cz" = "fullscreen-hot-corner-2"; - "lockkeys@vaina.lt" = "lock-keys"; "lockkeys@fawtytoo" = "lock-keys-2"; @@ -57,6 +54,9 @@ "noannoyance@sindex.com" = "noannoyance"; "noannoyance@daase.net" = "noannoyance-2"; + "SomaFm-Radio@alireza6677.gmail.com" = "somafm-internet-radio"; + "SomaFm-Radio@cajhne.gmail.com" = "somafm-internet-radio-2"; + "panel-date-format@keiii.github.com" = "panel-date-format"; "panel-date-format@atareao.es" = "panel-date-format-2"; diff --git a/pkgs/desktops/gnome/extensions/extensions.json b/pkgs/desktops/gnome/extensions/extensions.json index 8cdc7b1a901..66c874ff4bf 100644 --- a/pkgs/desktops/gnome/extensions/extensions.json +++ b/pkgs/desktops/gnome/extensions/extensions.json @@ -28,25 +28,25 @@ , {"uuid": "windowoverlay-icons@sustmidown.centrum.cz", "name": "WindowOverlay Icons", "pname": "windowoverlay-icons", "description": "Add application icons to window overview", "link": "https://extensions.gnome.org/extension/302/windowoverlay-icons/", "shell_version_map": {"38": {"version": "37", "sha256": "108a5i5v62a9i61av5pib3b0hcpmb6pw3np7c29jfngs25n14wd3", "metadata": "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"}}} , {"uuid": "dash-to-dock@micxgx.gmail.com", "name": "Dash to Dock", "pname": "dash-to-dock", "description": "A dock for the Gnome Shell. This extension moves the dash out of the overview transforming it in a dock for an easier launching of applications and a faster switching between windows and desktops. Side and bottom placement options are available.", "link": "https://extensions.gnome.org/extension/307/dash-to-dock/", "shell_version_map": {"38": {"version": "69", "sha256": "1nmqg875lxbxn8plwgmsrkhq126hcv56yl6iyq5wc4ljp98niaw0", "metadata": "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"}, "40": {"version": "71", "sha256": "071zxnbkh946x1fm16ddwlknaig15cm0dl7kvw97vhx6cw6668c3", "metadata": "ewogICJfZ2VuZXJhdGVkIjogIkdlbmVyYXRlZCBieSBTd2VldFRvb3RoLCBkbyBub3QgZWRpdCIsCiAgImRlc2NyaXB0aW9uIjogIkEgZG9jayBmb3IgdGhlIEdub21lIFNoZWxsLiBUaGlzIGV4dGVuc2lvbiBtb3ZlcyB0aGUgZGFzaCBvdXQgb2YgdGhlIG92ZXJ2aWV3IHRyYW5zZm9ybWluZyBpdCBpbiBhIGRvY2sgZm9yIGFuIGVhc2llciBsYXVuY2hpbmcgb2YgYXBwbGljYXRpb25zIGFuZCBhIGZhc3RlciBzd2l0Y2hpbmcgYmV0d2VlbiB3aW5kb3dzIGFuZCBkZXNrdG9wcy4gU2lkZSBhbmQgYm90dG9tIHBsYWNlbWVudCBvcHRpb25zIGFyZSBhdmFpbGFibGUuIiwKICAiZ2V0dGV4dC1kb21haW4iOiAiZGFzaHRvZG9jayIsCiAgIm5hbWUiOiAiRGFzaCB0byBEb2NrIiwKICAib3JpZ2luYWwtYXV0aG9yIjogIm1pY3hneEBnbWFpbC5jb20iLAogICJzaGVsbC12ZXJzaW9uIjogWwogICAgIjQwIiwKICAgICI0MSIKICBdLAogICJ1cmwiOiAiaHR0cHM6Ly9taWNoZWxlZy5naXRodWIuaW8vZGFzaC10by1kb2NrLyIsCiAgInV1aWQiOiAiZGFzaC10by1kb2NrQG1pY3hneC5nbWFpbC5jb20iLAogICJ2ZXJzaW9uIjogNzEKfQ=="}, "41": {"version": "71", "sha256": "071zxnbkh946x1fm16ddwlknaig15cm0dl7kvw97vhx6cw6668c3", "metadata": 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"shell_version_map": {"38": {"version": "10", "sha256": "070h11gk5zpxn5xbc71skdz174hbb72l0isia2vp7d9wy4ackl0k", "metadata": "ewogICJfZ2VuZXJhdGVkIjogIkdlbmVyYXRlZCBieSBTd2VldFRvb3RoLCBkbyBub3QgZWRpdCIsCiAgImRlc2NyaXB0aW9uIjogIkRpc3BsYXlzIE15dGhUViBzdGF0dXMgKGZyZWUgc3BhY2UgYW5kIHVwY29taW5nIHJlY29yZGluZ3MpIiwKICAibmFtZSI6ICJNeXRoVFYiLAogICJzaGVsbC12ZXJzaW9uIjogWwogICAgIjMuMzgiCiAgXSwKICAidXJsIjogImh0dHBzOi8vZ2l0aHViLmNvbS9mbnh3ZWIvZ25vbWUtc2hlbGwtbXl0aHR2IiwKICAidXVpZCI6ICJteXRodHYtZm54QGZueHdlYi5jb20iLAogICJ2ZXJzaW9uIjogMTAKfQ=="}}} -, {"uuid": "middleclickclose@paolo.tranquilli.gmail.com", "name": "Quick Close in Overview", "pname": "middle-click-to-close-in-overview", "description": "Close windows with a button click (the middle one by default) when in overview mode", "link": "https://extensions.gnome.org/extension/352/middle-click-to-close-in-overview/", "shell_version_map": {"38": {"version": "17", "sha256": "1nv6cjyiz1i7fddh21h0zmrvzfi3y70y1f0xsv2zd0rfg6rf0r77", "metadata": 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I give my permission to anyone who may want to become the maintainer. I do not have the free time or energy necessary to maintain the extension.\n\nConfigure the Activities Button and Top Panel. Select an icon. Change the text. Disable Hot Corner or set the Hot Corner Threshold. Set Panel Background color and transparency plus much more to enhance your desktop. 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+, {"uuid": "todo.txt@bart.libert.gmail.com", "name": "Todo.txt", "pname": "todotxt", "description": "A Gnome shell interface for todo.txt. \n\nTodo.txt is a future-proof syntax for tasks (not made by me), for more info: http://todotxt.com/\n\nSome examples:\nTask: Basic task\n(A) Task: High priority task\nTask @project +context: Task is part of project and has a certain context\nx 2013-08-22 Task: Task was completed on the 22nd of August\n\nFor more info about the syntax: https://github.com/ginatrapani/todo.txt-cli/wiki/The-Todo.txt-Format\n\nQuick start:\nWhen you first enable the extension, chances are high you'll see a [X] in your top panel. If you click the [X], you will be able to choose between creating the necessary files automatically or selecting your own existing files to be used with the extension.\n\nPlease use the issue tracker on the homepage to report bugs and/or file feature requests, this makes tracking easier for me. Thanks!\n\nSee the included CHANGELOG.md for info about changes between different versions, or see it online: https://gitlab.com/todo.txt-gnome-shell-extension/todo-txt-gnome-shell-extension/raw/master/CHANGELOG.md", "link": "https://extensions.gnome.org/extension/570/todotxt/", "shell_version_map": {"38": {"version": "33", "sha256": "0vk73vygk6p46f6axsyl9k33jmk2hhvrrynix3rq113nl5qwmy2j", "metadata": 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This extension moves the dash into the gnome main panel so that the application launchers and system tray are combined into a single panel, similar to that found in KDE Plasma and Windows 7+. A separate dock is no longer needed for easy access to running and favorited applications.\n\nFor a more traditional experience, you may also want to use Tweak Tool to enable Windows > Titlebar Buttons > Minimize > Maximize.\n\nFor the best support, please report any issues on Github. Dash-to-panel is developed and maintained by @jderose9 and @charlesg99.", "link": "https://extensions.gnome.org/extension/1160/dash-to-panel/", "shell_version_map": {"38": {"version": "42", "sha256": "0lv1qijfipl81s2f696jznrzjdgzblwm4q2fhz7755bplvy09sbv", "metadata": 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, {"uuid": "emoji-selector@maestroschan.fr", "name": "Emoji Selector", "pname": "emoji-selector", "description": "This extension provides a parametrable popup menu displaying most emojis, clicking on an emoji copies it to the clipboard. 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Key + t is provided to disable the extension.\n\nSome effects might not work properly on wayland, for which an option to integrate with wayland is provided on Integrations tab.\nHowever, some animations might not work properly.\n\nTo manage effect Delay time enable Show delay time in preferences Window from Top Right Application menu -> Preferences\nand reopen preferences.", "link": "https://extensions.gnome.org/extension/1680/animation-tweaks/", "shell_version_map": {"38": {"version": "18", "sha256": "07niv7biy9yxmxdg498kqypyqva6y8slm3gmn70dpx9f9ng8ya55", "metadata": 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newer Gnome-Shells.", "link": "https://extensions.gnome.org/extension/1714/ssh-search-provider-reborn/", "shell_version_map": {"38": {"version": "11", "sha256": "1dyzkbzy2lg2h3ixz1i86hbrh69irw70whbrl8vw0m5yypfm15wm", "metadata": 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"42": {"version": "11", "sha256": "1dyzkbzy2lg2h3ixz1i86hbrh69irw70whbrl8vw0m5yypfm15wm", "metadata": 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Starting applications or switching to a workspace with open windows will hide the application view if it's showing.\nFrom version 22, this extension waits for any window closing animation to complete (if enabled) before showing the application view.", "link": "https://extensions.gnome.org/extension/2036/show-application-view-when-workspace-empty/", "shell_version_map": {"38": {"version": "25", "sha256": "1810bd4wqxblwc8y4gzwlc8ld4li2ggb6xpiqilag6aa8pz8y1yq", "metadata": 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, {"uuid": "activities_icon_menu@fawtytoo", "name": "Activities Icon Menu", "pname": "activities-menu-for-apps-and-windows", "description": "This extension turns the Activities button into a popup menu with icons for selecting either Applications or Workspaces in the Overview. Selecting the same view again will hide the overview.\n\nThis is particularly useful for tablet users that find the Activities button difficult to click on, whereas a menu can be more easily invoked.", "link": "https://extensions.gnome.org/extension/2048/activities-menu-for-apps-and-windows/", "shell_version_map": {"38": {"version": "11", "sha256": "028nrx3hakj8mcr3n6nsnrzg2mfikn49m4j2pjyq67y7vikjr4af", "metadata": 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prayer.\n- Automatic Geoclue2 location detection\n- Show times in 24 hour and 12 hour formats\n- Hijri date adjusment\n- Moon status icon", "link": "https://extensions.gnome.org/extension/3602/azan-islamic-prayer-times/", "shell_version_map": {"38": {"version": "2", "sha256": "1z58m1w04mdddq9p3102jv852zks41f2l7xbx7j8jcljy4ahiqll", "metadata": 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نسخههای گنوم\nدر حال توسعه...\n\nShows Persian + Islamic + Gregorian date in the panel of gnome.\n\nIt shows:\n1- Persian calendar\n2- It can show, today is holiday or not!\n3- Show notification onDayChanged!\n4- Date converter between Persian, Gregorian and Lunar Hijri(Islamic)\n5- Show calendar Events.\n6- Show PrayTimes and play sound (Azan).\n\nPlease \"rate\" here and \"star\" project in GitHub.\nPlease open an issue in GitHub if you found something or have an idea!\nگزارش مشکلات:\nhttps://github.com/SCR-IR/gnome-shamsi-calendar/issues", "link": "https://extensions.gnome.org/extension/3618/shamsi-calendar/", "shell_version_map": {"38": {"version": "19", "sha256": "01c8v8nh0qixilhzhff9fbi90hc3cw07myhwhlaf2i4f3ykkvmbl", "metadata": 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+, {"uuid": "shamsi-calendar@gnome.scr.ir", "name": "Iranian Persian Calendar", "pname": "shamsi-calendar", "description": "تقویم هجری شمسی،قمری و میلادی در میزکار گنوم لینوکس\nقابلیت نمایش اوقات شرعی و پخش اذان\nدرج تعطیلیها و مناسبتهای رسمی تقویم\nزبان کاملاً فارسی\nتاریخ قمری هلالی ایران\nسازگار با اکثر نسخههای گنوم\nدر حال توسعه...\n\nShows Persian + Islamic + Gregorian date in the panel of gnome.\n\nIt shows:\n1- Persian calendar\n2- It can show, today is holiday or not!\n3- Show notification onDayChanged!\n4- Date converter between Persian, Gregorian and Lunar Hijri(Islamic)\n5- Show calendar Events.\n6- Show PrayTimes and play sound (Azan).\n\nPlease \"rate\" here and \"star\" project in GitHub.\nPlease open an issue in GitHub if you found something or have an idea!\nگزارش مشکلات:\nhttps://github.com/SCR-IR/gnome-shamsi-calendar/issues", "link": "https://extensions.gnome.org/extension/3618/shamsi-calendar/", "shell_version_map": {"38": {"version": "20", "sha256": 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Fork of simplenetspeed \n \nWhat's new\n☞ Add Use System Color Scheme option \n☞ Update Preferences logic \n☞ Filter more devices for net speed indicator \n\nFull CHANGELOG can be found on github releases page \n\nFeatures \n1. Clean UI \n2. Adjustable Refresh rate \n3. Preferences to manage extension \n4. Vertical Alignment Support \n5. Two Icon sets for Indicators \n\nFeature Highlights for Preferences \n1. Lock Mouse Actions option \n2. Advance Position options to pinpoint where to place the indicator on the Panel. \n3. Refresh time option by which you can change refresh rate value between 1.0 sec to 10.0 sec. \n4. Show Upload First option to show upload speed first \n5. Color Customizations for speed indicators \n6. Hide when Disconnected option \n7. Use Shorten Units option \n8. Limit Unit option and more... \n\nModes \n- Total net speed in b/s, kb/s, ... \n- Total net speed in B/s, KB/s, ... \n- Up & down speed in b/s, kb/s, ... \n- Up & down speed in B/s, KB/s, ... \n- Total downloads in B, KB, ... (Right click to reset counter) \n\nMouse Events \n- Left click to change modes \n- Right click(in 1-4 modes): Toggle the visibility of total loaded. \n- Right click(in 5th mode): Reset total downloaded. \n- Right Click(Four consecutive times): Toggle through horizontal/vertical alignment. \n- Middle click: Cycle through the font sizes.", "link": "https://extensions.gnome.org/extension/3724/net-speed-simplified/", "shell_version_map": {"38": {"version": "35", "sha256": "0nh00iach2mnrdij1ywp5l6vr064q9dfwwjv4g2n4mqiz9jxr1lv", "metadata": 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, {"uuid": "workspaces-bar@fthx", "name": "Workspaces Bar", "pname": "workspaces-bar", "description": "Replace 'Activities' button by all current workspaces buttons. Switch workspace or toggle overview by clicking on these buttons.\n\n You can use names for workspaces: there are two ways for that. 1) Edit the string array 'org.gnome.desktop.wm.preferences.workspace-names' gsettings key (through dconf editor, e.g.). 2) Use official GNOME extension Workspaces Indicator's settings. 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You can use it with R if this extension does not work for your R installation setup.\n\nKeywords: stat, stats, statistics, statistical, r-cran.", "link": "https://extensions.gnome.org/extension/3916/sticky-r-terminal/", "shell_version_map": {"38": {"version": "1", "sha256": "17x84g6fb785jmcl5jz41nw4rgzaad48mc5zllh5b3a485731f0s", "metadata": 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{"uuid": "babar@fthx", "name": "BaBar Task Bar", "pname": "babar", "description": "Task bar. App grid, favorites, workspaces and tasks in panel. Light extension.\n\n Replace 'Activities' button by all current workspaces and apps buttons. Switch workspace/app or toggle overview by clicking on these buttons. Drag and drop favorite, task, dash item or app grid item to any workspace (you cannot reorder tasks inside a workspace). Persistent window preview with right-click (right-click again or click on preview to close it). You can move this preview anywhere. Change 'Places' label to an icon. Settings in preferences UI.\n\n You can use names for workspaces: there are two ways for that. 1) Edit the string array 'org.gnome.desktop.wm.preferences.workspace-names' gsettings key (through dconf editor, e.g.). 2) Use official GNOME extension Workspaces Indicator's settings. You don't have to write a long enough list: numbers are displayed if no workspace name is defined.\n\n Changelog: https://github.com/fthx/babar/issues/2", "link": "https://extensions.gnome.org/extension/4000/babar/", "shell_version_map": {"38": {"version": "58", "sha256": "0sgsz9skc0d3rx9lap6g8fnmb5ki4ylr8s5f8yk5wkpvzvh3gkgy", "metadata": 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, {"uuid": "kitsch@fopdoodle.net", "name": "Kitsch", "pname": "kitsch", "description": "Kitsch is a collection of cheap, popular, and marketable improvements to Gnome. One could consider it applying a cosmetic surgery to Gnome.\n\nKitsch can easily be configured and offers the following features:\n- remove application menu from the top bar\n- remove the activity button from the top bar\n- periodically change the background picture\n\nThis extension does not come with any button on the panel. Visit the website for a documentation.", "link": "https://extensions.gnome.org/extension/4001/kitsch/", "shell_version_map": {"38": {"version": "2", "sha256": "16zwz0p4f8zizr14k4jmdixgnjd0a67d0i3w6clrqgfl49cpdcdv", "metadata": 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"8", "sha256": "1wg4cgnkf0z1lackj13w55vpn07pal15nljc6c0imnm3fc34hjx2", "metadata": 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"personalize@Selenium-H", "name": "Personalize", "pname": "personalize", "description": "Personalize the looks of GNOME Desktop.\n\nSet the theme variant, window corner curvature and select accent color.\nThe Colors section contains colors generated from the selected accent color.\nThe color generation is not accurate. However, individual colors can be customised.\n\nNot all settings are applied automatically.\nPress Refresh button on the left of the headerbar to reload the extension \n\nCurrently, only Adwaita theme is supported. Also, Adwaita and Adwaita-dark gtk-2 themes\nmust be installed for the extension to work properly. Not all widgets are themed perfectly.", "link": "https://extensions.gnome.org/extension/4010/personalize/", "shell_version_map": {"38": {"version": "1", "sha256": "1rgh2zq7086ymf0222pbrx5n8q11v3f45095w4x3ikw7k12j9s0n", "metadata": "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"}}} , {"uuid": "gnomebedtime@ionutbortis.gmail.com", "name": "Bedtime Mode", "pname": "gnome-bedtime", "description": "Hey Gnome, it's bedtime! Converts to grayscale the entire Gnome workspace by using a smooth transition. Best to use during evening/night.\n\nThis behaviour is similar to Android's bedtime mode which converts the phone screen to grayscale. It should somewhat make your device less appealing and limit the usage of it before bedtime. On my side, at least, it still requires a fair amount of self control in order to make that happen.\n\nThe extension has a nice Settings UI where you can customize it to your liking:\n- Set an automatic schedule for turning on/off the Bedtime Mode\n- Add an On Demand button to Top Bar or System Menu to manually toggle the mode\n- Control the On Demand button visibility, appearance and position in Top Bar\n- Choose another color preset and intensity, if you prefer a different color scheme\n- Change color intensity on the fly by scrolling over the On Demand button in Top Bar\n\nMulti language support is also available, please check the GitHub page if you want to help with the translations. So far, the extension is fully translated to Spanish, Dutch, German, Romanian and English.\n\nIf you want to use a keyboard shortcut in order to toggle the Bedtime Mode then you can use this command for the shortcut:\n\nbash -c 'schema_id=org.gnome.shell.extensions.bedtime-mode; schema_dir=~/.local/share/gnome-shell/extensions/gnomebedtime@ionutbortis.gmail.com/schemas/; if [[ $(gsettings --schemadir $schema_dir get $schema_id bedtime-mode-active) == \"true\" ]]; then turn_on=false; else turn_on=true; fi; gsettings --schemadir $schema_dir set $schema_id bedtime-mode-active $turn_on;'\n", "link": "https://extensions.gnome.org/extension/4012/gnome-bedtime/", "shell_version_map": {"38": {"version": "10", "sha256": "0biakzi3szz2czl6mdhacysq4apz3pslxqi9hhp6lyp1hnch7jll", "metadata": 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"40": {"version": "10", "sha256": "0biakzi3szz2czl6mdhacysq4apz3pslxqi9hhp6lyp1hnch7jll", "metadata": 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"41": {"version": "10", "sha256": "0biakzi3szz2czl6mdhacysq4apz3pslxqi9hhp6lyp1hnch7jll", "metadata": 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"VPNStatus@jesusalc@intuivo.com", "name": "VPNStatus Indicator", "pname": "vpnstatus-indicator", "description": "displays the current state of VPNStatus VPN\n\nchecks, if /proc/net/route contains entries for device nmcli?, this is the VPNStatus network device.\n", "link": "https://extensions.gnome.org/extension/4039/vpnstatus-indicator/", "shell_version_map": {"38": {"version": "1", "sha256": "1y4ym6lpwfi03rc6186yjc7mns01q5nrwiqizghls7hiyfg3kqrn", "metadata": "ewogICJfZ2VuZXJhdGVkIjogIkdlbmVyYXRlZCBieSBTd2VldFRvb3RoLCBkbyBub3QgZWRpdCIsCiAgImRlc2NyaXB0aW9uIjogImRpc3BsYXlzIHRoZSBjdXJyZW50IHN0YXRlIG9mIFZQTlN0YXR1cyBWUE5cblxuY2hlY2tzLCBpZiAvcHJvYy9uZXQvcm91dGUgY29udGFpbnMgZW50cmllcyBmb3IgZGV2aWNlIG5tY2xpPywgdGhpcyBpcyB0aGUgVlBOU3RhdHVzIG5ldHdvcmsgZGV2aWNlLlxuIiwKICAibmFtZSI6ICJWUE5TdGF0dXMgSW5kaWNhdG9yIiwKICAic2hlbGwtdmVyc2lvbiI6IFsKICAgICIzLjM4IgogIF0sCiAgInVybCI6ICIiLAogICJ1dWlkIjogIlZQTlN0YXR1c0BqZXN1c2FsY0BpbnR1aXZvLmNvbSIsCiAgInZlcnNpb24iOiAxCn0="}}} , {"uuid": 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The other ones still can be selected via the menu or using GNOME's shortcuts (Super+Space, Shift+Super+Space). It's useful when you have two primary layouts and more additional, which are used more rarely.", "link": "https://extensions.gnome.org/extension/4042/switch-two-layouts/", "shell_version_map": {"38": {"version": "3", "sha256": "0lzr3nx55842w7x60kx20fm8p07gz9gxh1lkqk9sic2784cbydsc", "metadata": "ewogICJfZ2VuZXJhdGVkIjogIkdlbmVyYXRlZCBieSBTd2VldFRvb3RoLCBkbyBub3QgZWRpdCIsCiAgImRlc2NyaXB0aW9uIjogIlRoaXMgZXh0ZW5zaW9uIG1ha2VzIFhLQiBzaG9ydGN1dHMgdG8gc3dpdGNoIGtleWJvYXJkIGxheW91dHMgKHN1Y2ggYXMgQ2FwcyBMb2NrLCBDdHJsK1NoaWZ0LCBldGMuKSBjeWNsZSBiZXR3ZWVuIHRoZSB0d28gZmlyc3QgbGF5b3V0cy4gVGhlIG90aGVyIG9uZXMgc3RpbGwgY2FuIGJlIHNlbGVjdGVkIHZpYSB0aGUgbWVudSBvciB1c2luZyBHTk9NRSdzIHNob3J0Y3V0cyAoU3VwZXIrU3BhY2UsIFNoaWZ0K1N1cGVyK1NwYWNlKS4gSXQncyB1c2VmdWwgd2hlbiB5b3UgaGF2ZSB0d28gcHJpbWFyeSBsYXlvdXRzIGFuZCBtb3JlIGFkZGl0aW9uYWwsIHdoaWNoIGFyZSB1c2VkIG1vcmUgcmFyZWx5LiIsCiAgIm5hbWUiOiAiU3dpdGNoIFR3byBMYXlvdXRzIiwKICAic2hlbGwtdmVyc2lvbiI6IFsKICAgICIzLjM4IiwKICAgICI0MCIsCiAgICAiNDEiCiAgXSwKICAidXJsIjogIiIsCiAgInV1aWQiOiAic3dpdGNodHdvbGF5b3V0c0BxdG1heC5kZXYiLAogICJ2ZXJzaW9uIjogMwp9"}, "40": {"version": "3", "sha256": "0lzr3nx55842w7x60kx20fm8p07gz9gxh1lkqk9sic2784cbydsc", "metadata": "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"}, "41": {"version": "3", "sha256": "0lzr3nx55842w7x60kx20fm8p07gz9gxh1lkqk9sic2784cbydsc", "metadata": "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"}}} , {"uuid": "notification-dismiss@kronosoul.xyz", "name": "Dismiss Notifications on Right Click", "pname": "dismiss-notifications-on-right-click", "description": "Simple extension that removes notification popups when they are right clicked.", "link": "https://extensions.gnome.org/extension/4048/dismiss-notifications-on-right-click/", "shell_version_map": {"38": {"version": "1", "sha256": "19pdz3lg1ybmgvpahfwzzhwk8fyhm1sr3wawddz5z66i22spcgjj", "metadata": "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"}}} -, {"uuid": "disable-gestures-2021@verycrazydog.gmail.com", "name": "Disable Gestures 2021", "pname": "disable-gestures-2021", "description": "Disable all GNOME built-in gestures. 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, {"uuid": "hass-gshell@geoph9-on-github", "name": "Home Assistant Extension", "pname": "home-assistant-extension", "description": "A simple gnome shell extension for Home Assistant. Check the README on github for additional help!\n\nMain points:\n- You need to provide the url of your hass, a long live access token obtained from your profile page (on your hass web instance) and the entity ids of the entities you want to have as togglable.\n- In order to add some local temperature/humidity sensor, you may also provide a temperature and/or a humidity entity id (which should match the corresponding ids of your hass instance).", "link": "https://extensions.gnome.org/extension/4170/home-assistant-extension/", "shell_version_map": {"38": {"version": "3", "sha256": "04p2hvxyyc1zv441sv0l1dcxbdvzqp46mii3zvw0nhq8jg5pz8rr", "metadata": 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"42": {"version": "10", "sha256": "1h6lms1szjp2rz6q3hs8s0jsv71lyiabgygy4cqp1lj834k9hqpd", "metadata": 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@@ -497,7 +498,7 @@ , {"uuid": "gnome-citeurl-search-provider@raindrum.github.io", "name": "Legal Citation Search", "pname": "gnome-citeurl-search-provider", "description": "This extension lets you look up U.S. state and federal laws and court cases by typing citations (like \"42 USC 1983\" or \"U.S. Constitution Art. I, Sec. 3\") into the search bar.\nBy default, the search supports the U.S. Code and federal constitution, as well as nearly all codified state laws and constitutions, among other sources of law. You can also add more types of citation by following the instructions on the GitHub page.", "link": "https://extensions.gnome.org/extension/4225/gnome-citeurl-search-provider/", "shell_version_map": {"38": {"version": "6", "sha256": "024d98642smciv5n2vc4l2f8rglfrv180paj1g2rrq9k4pvg6yym", "metadata": "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"}, "40": {"version": "6", "sha256": "024d98642smciv5n2vc4l2f8rglfrv180paj1g2rrq9k4pvg6yym", "metadata": "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"}}} , {"uuid": "wireless-hid@chlumskyvaclav.gmail.com", "name": "Wireless HID", "pname": "wireless-hid", "description": "This extension shows the battery of the wireless keyboards, mice, and game controllers in percentages and colors. 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3-finger vertical & horizontal gesture\n• Optional minimize a window gesture\n• Override 3-finger gesture with 4-finger for switching workspace\n• Pinch to show desktop\n• Application specific keyboard shortcut based hold-swipe gestures (e.g., navigating browser tabs)\n• Configure speed of gestures\n• Support for X11\n \nOn X11, you need to install https://github.com/harshadgavali/gnome-x11-gesture-daemon\n\nReport any bugs/requests on GitHub (link directly below)\n", "link": "https://extensions.gnome.org/extension/4245/gesture-improvements/", "shell_version_map": {"40": {"version": "19", "sha256": "0srrlqk0h62d9ivhkv1gciw0zgp4rs6p6pc9p1w4gsayhh7zsqf2", "metadata": 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"41": {"version": "19", "sha256": "0srrlqk0h62d9ivhkv1gciw0zgp4rs6p6pc9p1w4gsayhh7zsqf2", "metadata": 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"42": {"version": "22", "sha256": "0rpgknf4lqyapdi7r54in4yx1b1zm1r921bvvr92svyc8ywv15yg", "metadata": 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, {"uuid": "eclipse@blackjackshellac.ca", "name": "eclipse", "pname": "eclipse", "description": "eclipse clipboard interface with item encryption\n\nAdded encryption of clipboard items. Encrypted items can be\nsaved to disk in a folder of your choice. These items are persisted\nbetween sessions using openssl to encrypt the content.\n\nEclipse uses dbus to communicate with the gpaste daemon.\n\nThe following utilities are required,\n\n# for example, on fedora (add gpaste-ui for gpaste settings gui)\n$ sudo dnf install gpaste openssl\n# ubuntu\n$ sudo apt install gpaste openssl\n\nNow works with Gpaste 1 and Gpaste 2 on GS 3.36, 3.38 and 40\n\nIf updating the extension reports an ERROR it should work after the next reboot or if you logout and login again. If you're not running on Wayland you should be able to just restart the shell (Alt+F2,r).\n\nPlease report issues on github.\n", "link": "https://extensions.gnome.org/extension/4246/eclipse/", "shell_version_map": {"38": {"version": "8", "sha256": "09j5f8p23m4v2bdad582497r194z05x4izc2wywp9nhv1nldcs3n", "metadata": "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"}, "40": {"version": "8", "sha256": "09j5f8p23m4v2bdad582497r194z05x4izc2wywp9nhv1nldcs3n", "metadata": 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extension is installed (usually stored in \"~/.local/share/gnome-shell/extensions\") and change IP address in extension.js file to your smart bulb's IP address and then extension should work.", "link": "https://extensions.gnome.org/extension/4436/wiz-light/", "shell_version_map": {"38": {"version": "4", "sha256": "0pby93ivqz2ymdskyjp6ajc2c588dbpq7vjj7b7d8mc03hvkap5z", "metadata": 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GitHub.\n\nThe default Terminal and Software center can also be changed.\n\nThis extension is a fork of - https://github.com/tofutech/tofumenu\n\nThe original project is no more supported thus I made this.", "link": "https://extensions.gnome.org/extension/4451/logo-menu/", "shell_version_map": {"38": {"version": "10", "sha256": "0d7xmiyj07d8sfw6fsvj5i8pjkmn5m44l0lh0hvbaxsk9h72gj00", "metadata": 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+, {"uuid": "logomenu@aryan_k", "name": "Logo Menu", "pname": "logo-menu", "description": "Logo Menu - Menu similar to Apple's macOS menu for the GNOME Desktop\nThis extension gives a simple menu along with the ability to get the icon of your distro on top left part of the panel for a great look.\nThe Icon can be customized through settings, it has both Linux and BSD logos.\nfor more screenshots, visit GitHub.\n\nThe default Terminal and Software center can also be changed.\n\nThis extension is a fork of - https://github.com/tofutech/tofumenu\n\nThe original project is no more supported thus I made this.", "link": "https://extensions.gnome.org/extension/4451/logo-menu/", "shell_version_map": {"38": {"version": "11", "sha256": "03vw9m37a62av3ka3rv2n1x7xk14sfl6db3xmxlgpl7pyw74wvyi", "metadata": 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"pname": "media-controls", "description": "Show controls and information of the currently playing media in the panel.\n\n - Highly customizable\n - Support GNOME 3.36(beta) , 3.38, 40, 41\n - Caches album art\n - Control every element in the extension", "link": "https://extensions.gnome.org/extension/4470/media-controls/", "shell_version_map": {"38": {"version": "20", "sha256": "0cvn15w11vgjpgrwb7436gyy6v7zlbnfk8bd34wyijfd9ny7d0xj", "metadata": 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No options, no bugs. ;-)", "link": "https://extensions.gnome.org/extension/4496/hide-panel-light-version-without-hot-corner/", "shell_version_map": {"38": {"version": "2", "sha256": "13kwd7sh0w34881wwaqvv0mchd7ym7av5s658jcrq2n8n2zma4xi", "metadata": "ewogICJfZ2VuZXJhdGVkIjogIkdlbmVyYXRlZCBieSBTd2VldFRvb3RoLCBkbyBub3QgZWRpdCIsCiAgImRlc2NyaXB0aW9uIjogIkhpZGUgdG9wIHBhbmVsIGV4Y2VwdCBpbiBvdmVydmlldy5cblxuRm9yIHRob3NlIHdobyBkb24ndCBuZWVkIGEgaG90IGNvcm5lciAoZS5nLiBydW5uaW5nIEdOT01FIDQwKyB3aXRoIHRocmVlIGZpbmdlcnMgZ2VzdHVyZXMpLiBWZXJ5IHZlcnkgbGlnaHQgZXh0ZW5zaW9uLiBObyBvcHRpb25zLCBubyBidWdzLiA7LSkiLAogICJuYW1lIjogIkhpZGUgUGFuZWwgTGl0ZSIsCiAgInNoZWxsLXZlcnNpb24iOiBbCiAgICAiMy4zNiIsCiAgICAiMy4zOCIsCiAgICAiNDAiLAogICAgIjQxIiwKICAgICI0MiIKICBdLAogICJ1cmwiOiAiaHR0cHM6Ly9naXRodWIuY29tL2Z0aHgvaGlkZS1wYW5lbC1saXRlIiwKICAidXVpZCI6ICJoaWRlLXBhbmVsLWxpdGVAZnRoeCIsCiAgInZlcnNpb24iOiAyCn0="}, "40": {"version": "2", "sha256": "13kwd7sh0w34881wwaqvv0mchd7ym7av5s658jcrq2n8n2zma4xi", "metadata": 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This affects heavily users typing languages with non-latin based alphabets (e.g. Greek, Cyrilic, Arabic, Japanese), particularly when writting technical documents.\nThis extension reduces the switching time to 1/10th of a second (on a 2019 PC).", "link": "https://extensions.gnome.org/extension/4559/quick-lang-switch/", "shell_version_map": {"38": {"version": "4", "sha256": "111kpn5h913074icx2b915v2myz42j78y97y1j5003xzh5yhmzwi", "metadata": "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"}, "40": {"version": "4", "sha256": "111kpn5h913074icx2b915v2myz42j78y97y1j5003xzh5yhmzwi", "metadata": "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"}, "41": {"version": "4", "sha256": "111kpn5h913074icx2b915v2myz42j78y97y1j5003xzh5yhmzwi", "metadata": "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"}}} @@ -609,14 +609,14 @@ , {"uuid": "p.stonham@switcheroo.org", "name": "Switcheroo", "pname": "switcheroo", "description": "Switch to the first window with the title x\n\nA very small extension to allow you to switch windows via gdbus. This is particularly useful if you are using wayland as utilities such as wmctrl won't work.\n\nSince Gnome 41 removed org.gnome.Shell.Eval for security reasons, if you ever used a command such as:\n\ngdbus call --session --dest org.gnome.Shell --object-path /org/gnome/Shell --method org.gnome.Shell.Eval\"var mw = global.get_window_actors().map(w=>w.meta_window).find(mw=>mw.get_title().includes('Firefox'));mw && mw.activate(0)\"\n\nthis can now be replaced with:\n\ngdbus call --session --dest org.gnome.Shell --object-path /org/switcheroo/Switcheroo --method org.switcheroo.Switcheroo.Set Firefox\n\nThis can then be assigned to a shortcut key in Gnome settings or called programmatically.", "link": "https://extensions.gnome.org/extension/4600/switcheroo/", "shell_version_map": {"41": {"version": "3", "sha256": "0pfjhx8pm26zpizazd2pbpfqsr8vwc6znrm1cbf4ydcyvfxsnwwh", "metadata": "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"}}} , {"uuid": "sane-airplane-mode@kippi", "name": "Sane Airplane Mode", "pname": "sane-airplane-mode", "description": "Make airplane mode sane again! This extension gives you better control over the airplane mode. \nHint: With this extension you can also turn off the annoying \"Bluetooth gets turned on when I disable airplane mode\" behaviour.", "link": "https://extensions.gnome.org/extension/4604/sane-airplane-mode/", "shell_version_map": {"40": {"version": "8", "sha256": "02g8mvw503yayabsw3a9fjl23awf8b3bcm1sn4ckb9cdrfirqvlm", "metadata": 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Maximized", "pname": "no-titlebar-when-maximized", "description": "Hides the classic title bar of maximized X.Org windows", "link": "https://extensions.gnome.org/extension/4630/no-titlebar-when-maximized/", "shell_version_map": {"41": {"version": "5", "sha256": "0gawpvbybkm4mlvx4h9d2bzqgll6rdgbmd9m1ia90bb2rzplmhii", "metadata": "ewogICJfZ2VuZXJhdGVkIjogIkdlbmVyYXRlZCBieSBTd2VldFRvb3RoLCBkbyBub3QgZWRpdCIsCiAgImRlc2NyaXB0aW9uIjogIkhpZGVzIHRoZSBjbGFzc2ljIHRpdGxlIGJhciBvZiBtYXhpbWl6ZWQgWC5Pcmcgd2luZG93cyIsCiAgIm5hbWUiOiAiTm8gVGl0bGViYXIgV2hlbiBNYXhpbWl6ZWQiLAogICJzaGVsbC12ZXJzaW9uIjogWwogICAgIjQxIiwKICAgICI0MiIKICBdLAogICJ1cmwiOiAiaHR0cHM6Ly9naXRodWIuY29tL2FsZWNkb3RuaW5qYS9uby10aXRsZWJhci13aGVuLW1heGltaXplZCIsCiAgInV1aWQiOiAibm8tdGl0bGViYXItd2hlbi1tYXhpbWl6ZWRAYWxlYy5uaW5qYSIsCiAgInZlcnNpb24iOiA1Cn0="}, "42": {"version": "5", "sha256": "0gawpvbybkm4mlvx4h9d2bzqgll6rdgbmd9m1ia90bb2rzplmhii", "metadata": 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Does use native GNOME Shell Dash. Very light extension.\n\n Hover the bottom of your screen and GNOME Shell dash will appear without overview and will hide when you leave the dash. Native GNOME Shell click behavior is modified: minimize if one window is open, overview if many windows are open. Scroll on the dock to change workspace. Some preferences in UI (thanks @rastersoft).\n\n I'm not notified of messages here, please report bugs only through GitHub.", "link": "https://extensions.gnome.org/extension/4703/dock-from-dash/", "shell_version_map": {"40": {"version": "56", "sha256": "0gy9f13ijacm8kk06r0zxf375fjfndgd56d69j5ry56ib8cn23fy", "metadata": "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"}, "41": {"version": "56", "sha256": "0gy9f13ijacm8kk06r0zxf375fjfndgd56d69j5ry56ib8cn23fy", "metadata": "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"}, "42": {"version": "56", "sha256": "0gy9f13ijacm8kk06r0zxf375fjfndgd56d69j5ry56ib8cn23fy", "metadata": "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"}}} -, {"uuid": "another-window-session-manager@gmail.com", "name": "Another Window Session Manager", "pname": "another-window-session-manager", "description": "Close and save open windows. 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See https://github.com/nlpsuge/gnome-shell-extension-another-window-session-manager#how-to-restore-a-session-at-startup to learn how to enable and use it.\n- Restore window state, including Always on Top, Always on Visible Workspace and maximization\n- Restore window workspace, size and position\n- Move windows to their own workspace according to a saved session\n- Support multi-monitor\n- Trash saved session\n- Search saved session by the session name fuzzily", "link": "https://extensions.gnome.org/extension/4709/another-window-session-manager/", "shell_version_map": {"40": {"version": "15", "sha256": "0y30zd0zghpvf8kihja564938l5hwkfy5b70c7288q6jp4ng8adj", "metadata": 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Some preferences in UI (thanks @rastersoft).\n\n I'm not notified of messages here, please report bugs only through GitHub.", "link": "https://extensions.gnome.org/extension/4703/dock-from-dash/", "shell_version_map": {"40": {"version": "57", "sha256": "1qw7gi0gb95rym7vd6wdanjnp3m8qyjsa57kxsr3p5hjq7gp68i8", "metadata": "ewogICJfZ2VuZXJhdGVkIjogIkdlbmVyYXRlZCBieSBTd2VldFRvb3RoLCBkbyBub3QgZWRpdCIsCiAgImRlc2NyaXB0aW9uIjogIkRvY2sgZm9yIEdOT01FIFNoZWxsIDQwKy4gRG9lcyB1c2UgbmF0aXZlIEdOT01FIFNoZWxsIERhc2guIFZlcnkgbGlnaHQgZXh0ZW5zaW9uLlxuXG4gSG92ZXIgdGhlIGJvdHRvbSBvZiB5b3VyIHNjcmVlbiBhbmQgR05PTUUgU2hlbGwgZGFzaCB3aWxsIGFwcGVhciB3aXRob3V0IG92ZXJ2aWV3IGFuZCB3aWxsIGhpZGUgd2hlbiB5b3UgbGVhdmUgdGhlIGRhc2guIE5hdGl2ZSBHTk9NRSBTaGVsbCBjbGljayBiZWhhdmlvciBpcyBtb2RpZmllZDogbWluaW1pemUgaWYgb25lIHdpbmRvdyBpcyBvcGVuLCBvdmVydmlldyBpZiBtYW55IHdpbmRvd3MgYXJlIG9wZW4uIFNjcm9sbCBvbiB0aGUgZG9jayB0byBjaGFuZ2Ugd29ya3NwYWNlLiBTb21lIHByZWZlcmVuY2VzIGluIFVJICh0aGFua3MgQHJhc3RlcnNvZnQpLlxuXG4gSSdtIG5vdCBub3RpZmllZCBvZiBtZXNzYWdlcyBoZXJlLCBwbGVhc2UgcmVwb3J0IGJ1Z3Mgb25seSB0aHJvdWdoIEdpdEh1Yi4iLAogICJuYW1lIjogIkRvY2sgZnJvbSBEYXNoIiwKICAic2hlbGwtdmVyc2lvbiI6IFsKICAgICI0MCIsCiAgICAiNDEiLAogICAgIjQyIgogIF0sCiAgInVybCI6ICJodHRwczovL2dpdGh1Yi5jb20vZnRoeC9kb2NrLWZyb20tZGFzaCIsCiAgInV1aWQiOiAiZG9jay1mcm9tLWRhc2hAZnRoeCIsCiAgInZlcnNpb24iOiA1Nwp9"}, "41": {"version": "57", "sha256": "1qw7gi0gb95rym7vd6wdanjnp3m8qyjsa57kxsr3p5hjq7gp68i8", "metadata": "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"}, "42": {"version": "57", "sha256": "1qw7gi0gb95rym7vd6wdanjnp3m8qyjsa57kxsr3p5hjq7gp68i8", "metadata": "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"}}} +, {"uuid": "another-window-session-manager@gmail.com", "name": "Another Window Session Manager", "pname": "another-window-session-manager", "description": "Close and save open windows. 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See https://github.com/nlpsuge/gnome-shell-extension-another-window-session-manager#how-to-restore-a-session-at-startup to learn how to enable and use it.\n- Restore window state, including Always on Top, Always on Visible Workspace and maximization\n- Restore window workspace, size and position\n- Move windows to their own workspace according to a saved session\n- Support multi-monitor\n- Trash saved session\n- Search saved session by the session name fuzzily", "link": "https://extensions.gnome.org/extension/4709/another-window-session-manager/", "shell_version_map": {"40": {"version": "16", "sha256": "03ykkp5vsss7p88wksxqa4pjfaq59six9rsa91l4zq7k4n1wn6nc", "metadata": 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Hover top panel and GNOME Shell dash appears without overview.\n\n Scroll on dock or panel changes workspace. Preferences UI.\n\n Does use native GNOME Shell Dash. 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click. \nTo switch between available sources, use right mouse click. \nTo change refresh time 200 - 1000 use middle mouse click. \nThe first source with usage higher than zero will be picked by default. \nThe extension will pick the first source by default, and if no traffic is established it will switch to the next one and so on\nThe source code is available in the link below, update requests are welcome.", "link": "https://extensions.gnome.org/extension/4947/net-speed-monitor/", "shell_version_map": {"38": {"version": "5", "sha256": "1zvp8zx82kqbf9ck55csgcysld3z1gr3cigkl5y73s5rvqj3ks5n", "metadata": 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+, {"uuid": "dollar-clp@albolea.github.com", "name": "Dollar-CLP", "pname": "dollar-clp", "description": "(USD US Dollar) converted to (CLP Peso Chileno). Updates are received every 30 seconds and are based on information provided by AwesomeAPI API, which can be consulted directly by accessing the address https://docs.awesomeapi.com.br. (based on michael.mattos's Dollar https://extensions.gnome.org/extension/4573/dollar/)", "link": "https://extensions.gnome.org/extension/5066/dollar-clp/", "shell_version_map": {"38": {"version": "2", "sha256": "0lc7mx77qvxx2q04bljza8pv1p98sv5qyi7rpbmr572yalxmsyv7", "metadata": "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"}, "40": {"version": "2", "sha256": "0lc7mx77qvxx2q04bljza8pv1p98sv5qyi7rpbmr572yalxmsyv7", "metadata": "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"}, "41": {"version": "2", "sha256": "0lc7mx77qvxx2q04bljza8pv1p98sv5qyi7rpbmr572yalxmsyv7", "metadata": "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"}, "42": {"version": "2", "sha256": "0lc7mx77qvxx2q04bljza8pv1p98sv5qyi7rpbmr572yalxmsyv7", "metadata": "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"}}} +, {"uuid": "real-clp@albolea.github.com", "name": "Real-CLP", "pname": "real-clp", "description": "(BRL Brazil Real) converted to (CLP Peso Chileno). Updates are received every 30 seconds and are based on information provided by AwesomeAPI API, which can be consulted directly by accessing the address https://docs.awesomeapi.com.br. (based on michael.mattos's Dollar https://extensions.gnome.org/extension/4573/dollar/)", "link": "https://extensions.gnome.org/extension/5069/real-clp/", "shell_version_map": {"38": {"version": "1", "sha256": "1kapkrz86qgxssas6wvf2rqmja0528j70b0dm9lhr88ya8rv4y93", "metadata": "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"}, "40": {"version": "1", "sha256": "1kapkrz86qgxssas6wvf2rqmja0528j70b0dm9lhr88ya8rv4y93", "metadata": "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"}, "41": {"version": "1", "sha256": "1kapkrz86qgxssas6wvf2rqmja0528j70b0dm9lhr88ya8rv4y93", "metadata": "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"}, "42": {"version": "1", "sha256": "1kapkrz86qgxssas6wvf2rqmja0528j70b0dm9lhr88ya8rv4y93", "metadata": "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"}}} ] diff --git a/pkgs/desktops/gnome/extensions/update-extensions.py b/pkgs/desktops/gnome/extensions/update-extensions.py index 8feee4437f4..9117ea27040 100755 --- a/pkgs/desktops/gnome/extensions/update-extensions.py +++ b/pkgs/desktops/gnome/extensions/update-extensions.py @@ -47,10 +47,6 @@ def fetch_extension_data(uuid: str, version: str) -> Tuple[str, str]: uuid = uuid.replace("@", "") url: str = f"https://extensions.gnome.org/extension-data/{uuid}.v{version}.shell-extension.zip" - # TODO remove when Vitals@CoreCoding.com version != 53, this extension has a missing manifest.json - if url == 'https://extensions.gnome.org/extension-data/VitalsCoreCoding.com.v53.shell-extension.zip': - url = 'https://extensions.gnome.org/extension-data/VitalsCoreCoding.com.v53.shell-extension_v1BI2FB.zip' - # Download extension and add the zip content to nix-store process = subprocess.run( ["nix-prefetch-url", "--unpack", "--print-path", url], capture_output=True, text=True diff --git a/pkgs/desktops/pantheon/apps/elementary-calendar/default.nix b/pkgs/desktops/pantheon/apps/elementary-calendar/default.nix index f3bd37b00e0..1984a6ebbe2 100644 --- a/pkgs/desktops/pantheon/apps/elementary-calendar/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-calendar/default.nix @@ -2,8 +2,6 @@ , stdenv , fetchFromGitHub , nix-update-script -, appstream-glib -, desktop-file-utils , meson , ninja , pkg-config @@ -25,18 +23,16 @@ stdenv.mkDerivation rec { pname = "elementary-calendar"; - version = "6.1.0"; + version = "6.1.1"; src = fetchFromGitHub { owner = "elementary"; repo = "calendar"; rev = version; - sha256 = "sha256-LaVJ7QLc0UdSLgLIuHP4Anc7kPUelZW9PnIWuqKGtEQ="; + sha256 = "sha256-c2c8QNifBDzb0CelB72AIL4G694l6KCSXBjWIHrzZJo="; }; nativeBuildInputs = [ - appstream-glib - desktop-file-utils meson ninja pkg-config diff --git a/pkgs/desktops/pantheon/apps/elementary-photos/default.nix b/pkgs/desktops/pantheon/apps/elementary-photos/default.nix index 48cfda3df76..7edbc04e3ed 100644 --- a/pkgs/desktops/pantheon/apps/elementary-photos/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-photos/default.nix @@ -1,7 +1,6 @@ { lib , stdenv , fetchFromGitHub -, fetchpatch , nix-update-script , meson , ninja @@ -32,24 +31,15 @@ stdenv.mkDerivation rec { pname = "elementary-photos"; - version = "2.7.4"; + version = "2.7.5"; src = fetchFromGitHub { owner = "elementary"; repo = "photos"; rev = version; - sha256 = "sha256-NhF/WgS6IOwgALSCNyFNxz8ROVTb+mUX+lBtnWEyhEI="; + sha256 = "sha256-zM32+bva+QD1Z/0vUD7K0/tnSzo+7GGLjJ1ytr64c0I="; }; - patches = [ - # Fix build with vala 0.56 - # https://github.com/elementary/photos/pull/711 - (fetchpatch { - url = "https://github.com/elementary/photos/commit/6594f1323726fb0d38519a7bdafe16f9170353cb.patch"; - sha256 = "sha256-Ie9ULC8Xw4KLQJANPXh4LDywMjWfniPX/P76eHW8LHc="; - }) - ]; - nativeBuildInputs = [ appstream desktop-file-utils diff --git a/pkgs/desktops/pantheon/apps/elementary-terminal/default.nix b/pkgs/desktops/pantheon/apps/elementary-terminal/default.nix index fe6e5a40fa4..aa3d9981998 100644 --- a/pkgs/desktops/pantheon/apps/elementary-terminal/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-terminal/default.nix @@ -1,7 +1,6 @@ { lib , stdenv , fetchFromGitHub -, fetchpatch , nix-update-script , pkg-config , meson @@ -10,41 +9,28 @@ , vala , desktop-file-utils , gtk3 -, libxml2 , granite , libhandy , libnotify , vte , libgee -, appstream , pcre2 , wrapGAppsHook }: stdenv.mkDerivation rec { pname = "elementary-terminal"; - version = "6.0.1"; + version = "6.0.2"; src = fetchFromGitHub { owner = "elementary"; repo = "terminal"; rev = version; - sha256 = "sha256-4q7YQ4LxuiM/TRae1cc3ncmw7QwE1soC2Sh+GZ+Gpq0="; + sha256 = "sha256-glcY47E9bGVI6k9gakItN6srzMtmA4hCEz/JVD5UUmI="; }; - patches = [ - # Fix build with meson 0.61 - # https://github.com/elementary/terminal/pull/649 - (fetchpatch { - url = "https://github.com/elementary/terminal/commit/15e3ace08cb25e53941249fa1ee680a1e2f871b4.patch"; - sha256 = "sha256-XVs+kq5qbX5KlxtkqxwJnatNYNeJiVLBec7sLjQsUxg="; - }) - ]; - nativeBuildInputs = [ - appstream desktop-file-utils - libxml2 meson ninja pkg-config diff --git a/pkgs/desktops/pantheon/apps/switchboard-plugs/onlineaccounts/default.nix b/pkgs/desktops/pantheon/apps/switchboard-plugs/onlineaccounts/default.nix index 70ab050c7ec..a3d8d049e3b 100644 --- a/pkgs/desktops/pantheon/apps/switchboard-plugs/onlineaccounts/default.nix +++ b/pkgs/desktops/pantheon/apps/switchboard-plugs/onlineaccounts/default.nix @@ -18,13 +18,13 @@ stdenv.mkDerivation rec { pname = "switchboard-plug-onlineaccounts"; - version = "6.4.0"; + version = "6.5.0"; src = fetchFromGitHub { owner = "elementary"; repo = pname; rev = version; - sha256 = "sha256-Fppl/IvdlW8lZ6YKEHaHNticv3FFFKEKTPPVnz4u9b4="; + sha256 = "sha256-Q/vvXKyeedn5o7HnL9F5ixSjJS3OWrvvHbzvx2fW2qY="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/pantheon/apps/switchboard-plugs/power/default.nix b/pkgs/desktops/pantheon/apps/switchboard-plugs/power/default.nix index 2a531815f87..d0079e6a057 100644 --- a/pkgs/desktops/pantheon/apps/switchboard-plugs/power/default.nix +++ b/pkgs/desktops/pantheon/apps/switchboard-plugs/power/default.nix @@ -19,13 +19,13 @@ stdenv.mkDerivation rec { pname = "switchboard-plug-power"; - version = "2.6.0"; + version = "2.7.0"; src = fetchFromGitHub { owner = "elementary"; repo = pname; rev = version; - sha256 = "006h8mrhmdrbd83vhdyahgrfk9wh6j9kjincpp7dz7sl8fsyhmcr"; + sha256 = "sha256-8Hu2RIgA0gSc+tLNjDqGS+b/HpbsOdR4otpY4UqNzKs="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/pantheon/apps/switchboard-plugs/security-privacy/default.nix b/pkgs/desktops/pantheon/apps/switchboard-plugs/security-privacy/default.nix index 550562f19b1..b59e26e344f 100644 --- a/pkgs/desktops/pantheon/apps/switchboard-plugs/security-privacy/default.nix +++ b/pkgs/desktops/pantheon/apps/switchboard-plugs/security-privacy/default.nix @@ -21,13 +21,13 @@ stdenv.mkDerivation rec { pname = "switchboard-plug-security-privacy"; - version = "2.3.0"; + version = "2.4.0"; src = fetchFromGitHub { owner = "elementary"; repo = pname; rev = version; - sha256 = "sha256-pkpS7BR/eXA0rWV1C5AR+FdF5OkDnV8YDBAt1ZkaVPo="; + sha256 = "sha256-jT8aYE36ZAeB9ng3RojVqxzmLtzpbsNRHPuDQ03XKcI="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/pantheon/services/elementary-capnet-assist/default.nix b/pkgs/desktops/pantheon/services/elementary-capnet-assist/default.nix index 24ce7b5ad56..73453825913 100644 --- a/pkgs/desktops/pantheon/services/elementary-capnet-assist/default.nix +++ b/pkgs/desktops/pantheon/services/elementary-capnet-assist/default.nix @@ -19,13 +19,13 @@ stdenv.mkDerivation rec { pname = "elementary-capnet-assist"; - version = "2.4.1"; + version = "2.4.2"; src = fetchFromGitHub { owner = "elementary"; repo = "capnet-assist"; rev = version; - sha256 = "sha256-8hhp37EBzZxEVvPaRw9PohjaPWKQZ/AfqqvwLxQCBKk="; + sha256 = "sha256-aA71kxu4/dwODZt+DSp3vvely3P0dL23Ykqhd84hrZw="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/pantheon/services/elementary-settings-daemon/default.nix b/pkgs/desktops/pantheon/services/elementary-settings-daemon/default.nix index ff0cc92da33..a57d14d2f40 100644 --- a/pkgs/desktops/pantheon/services/elementary-settings-daemon/default.nix +++ b/pkgs/desktops/pantheon/services/elementary-settings-daemon/default.nix @@ -21,13 +21,13 @@ stdenv.mkDerivation rec { pname = "elementary-settings-daemon"; - version = "1.1.0"; + version = "1.2.0"; src = fetchFromGitHub { owner = "elementary"; repo = "settings-daemon"; rev = version; - sha256 = "sha256-1Xp1uJzDFuGZlhJhKj00cYtb4Q1syMAm+82fTOtk0VI="; + sha256 = "sha256-5QdCj2Z31t7dxZi7ZZ5g6qLgsMyw7rM5dRw0G8uoC6o="; }; nativeBuildInputs = [ diff --git a/pkgs/desktops/xfce/applications/xfce4-terminal/default.nix b/pkgs/desktops/xfce/applications/xfce4-terminal/default.nix index b2dc9096269..0eefbd44253 100644 --- a/pkgs/desktops/xfce/applications/xfce4-terminal/default.nix +++ b/pkgs/desktops/xfce/applications/xfce4-terminal/default.nix @@ -3,9 +3,9 @@ mkXfceDerivation { category = "apps"; pname = "xfce4-terminal"; - version = "1.0.2"; + version = "1.0.3"; - sha256 = "sha256-d69SjV7dkiYmc0R5OyU5DV5RM3h51an4idWV872QoE4="; + sha256 = "sha256-oZOnPAfvSXCreFHTIZYpJhOdtlDOHrAUMvGIjYU+TRU="; nativeBuildInputs = [ libxslt docbook_xml_dtd_45 docbook_xsl ]; diff --git a/pkgs/development/compilers/ccl/default.nix b/pkgs/development/compilers/ccl/default.nix index 79e7d324ec9..761ae5ba019 100644 --- a/pkgs/development/compilers/ccl/default.nix +++ b/pkgs/development/compilers/ccl/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, runCommand, bootstrap_cmds, coreutils, glibc, m4, runtimeShell }: +{ lib, stdenv, fetchurl, fetchpatch, runCommand, bootstrap_cmds, coreutils, glibc, m4, runtimeShell }: let options = rec { @@ -59,6 +59,21 @@ stdenv.mkDerivation rec { sha256 = cfg.sha256; }; + patches = [ + # Pull upstream fiux for -fno-common toolchains: + # https://github.com/Clozure/ccl/pull/316 + (fetchpatch { + name = "fno-common-p1.patch"; + url = "https://github.com/Clozure/ccl/commit/185dc1a00e7492f8be98e5f93b561758423595f1.patch"; + sha256 = "0wqfds7346qdwdsxz3bl2p601ib94rdp9nknj7igj01q8lqfpajw"; + }) + (fetchpatch { + name = "fno-common-p2.patch"; + url = "https://github.com/Clozure/ccl/commit/997de91062d1f152d0c3b322a1e3694243e4a403.patch"; + sha256 = "10w6zw8wgalkdyya4m48lgca4p9wgcp1h44hy9wqr94dzlllq0f6"; + }) + ]; + buildInputs = if stdenv.isDarwin then [ bootstrap_cmds m4 ] else [ glibc m4 ]; CCL_RUNTIME = cfg.runtime; diff --git a/pkgs/development/compilers/dotnet/build-dotnet.nix b/pkgs/development/compilers/dotnet/build-dotnet.nix index 4a30107bbec..67ce79ca575 100644 --- a/pkgs/development/compilers/dotnet/build-dotnet.nix +++ b/pkgs/development/compilers/dotnet/build-dotnet.nix @@ -1,6 +1,7 @@ { type , version , srcs +, icu #passing icu as an argument, because dotnet 3.1 has troubles with icu71 }: assert builtins.elem type [ "aspnetcore" "runtime" "sdk"]; @@ -11,7 +12,6 @@ assert builtins.elem type [ "aspnetcore" "runtime" "sdk"]; , writeText , libunwind , openssl -, icu , libuuid , zlib , curl @@ -38,7 +38,6 @@ in stdenv.mkDerivation rec { rpath = lib.makeLibraryPath ([ stdenv.cc.cc zlib - curl icu libunwind diff --git a/pkgs/development/compilers/dotnet/default.nix b/pkgs/development/compilers/dotnet/default.nix index 87256e95b02..0740802ca4a 100644 --- a/pkgs/development/compilers/dotnet/default.nix +++ b/pkgs/development/compilers/dotnet/default.nix @@ -5,7 +5,7 @@ dotnetCombined = with dotnetCorePackages; combinePackages [ sdk_3_1 sdk_5_0 aspn Hashes and urls below are retrieved from: https://dotnet.microsoft.com/download/dotnet */ -{ callPackage }: +{ callPackage, icu70, icu }: let buildDotnet = attrs: callPackage (import ./build-dotnet.nix attrs) {}; buildAspNetCore = attrs: buildDotnet (attrs // { type = "aspnetcore"; }); @@ -20,8 +20,11 @@ rec { sdk_2_2 = throw "Dotnet SDK 2.2 is EOL, please use 3.1 (LTS), 5.0 (Current) or 6.0 (LTS)"; sdk_3_0 = throw "Dotnet SDK 3.0 is EOL, please use 3.1 (LTS), 5.0 (Current) or 6.0 (LTS)"; + ##### Following attributes with urls and hashes should be auto-generated by print-hashes.sh ##### + # v3.1 (lts) aspnetcore_3_1 = buildAspNetCore { + icu = icu70; version = "3.1.21"; srcs = { x86_64-linux = { @@ -40,6 +43,7 @@ rec { }; runtime_3_1 = buildNetRuntime { + icu = icu70; version = "3.1.21"; srcs = { x86_64-linux = { @@ -58,6 +62,7 @@ rec { }; sdk_3_1 = buildNetSdk { + icu = icu70; version = "3.1.415"; srcs = { x86_64-linux = { @@ -77,6 +82,7 @@ rec { # v5.0 (current) aspnetcore_5_0 = buildAspNetCore { + inherit icu; version = "5.0.12"; srcs = { x86_64-linux = { @@ -95,6 +101,7 @@ rec { }; runtime_5_0 = buildNetRuntime { + inherit icu; version = "5.0.12"; srcs = { x86_64-linux = { @@ -113,6 +120,7 @@ rec { }; sdk_5_0 = buildNetSdk { + inherit icu; version = "5.0.403"; srcs = { x86_64-linux = { @@ -132,6 +140,7 @@ rec { # v6.0 (lts) aspnetcore_6_0 = buildAspNetCore { + inherit icu; version = "6.0.4"; srcs = { x86_64-linux = { @@ -154,6 +163,7 @@ rec { }; runtime_6_0 = buildNetRuntime { + inherit icu; version = "6.0.4"; srcs = { x86_64-linux = { @@ -176,6 +186,7 @@ rec { }; sdk_6_0 = buildNetSdk { + inherit icu; version = "6.0.202"; srcs = { x86_64-linux = { diff --git a/pkgs/development/compilers/dotnet/print-hashes.sh b/pkgs/development/compilers/dotnet/print-hashes.sh index 966f0a9c061..162f1af70ec 100755 --- a/pkgs/development/compilers/dotnet/print-hashes.sh +++ b/pkgs/development/compilers/dotnet/print-hashes.sh @@ -84,6 +84,11 @@ Examples: aspnetcore_files="$(release_files "$release_content" "aspnetcore-runtime")" runtime_files="$(release_files "$release_content" "runtime")" sdk_files="$(release_files "$release_content" "sdk")" + if [ $major_minor = "3.1" ]; then + icu_attr="icu = icu70;" + else + icu_attr="inherit icu;" + fi major_minor_underscore=${major_minor/./_} channel_version=$(jq -r '."channel-version"' <<< "$content") @@ -91,16 +96,19 @@ Examples: echo " # v$channel_version ($support_phase) aspnetcore_$major_minor_underscore = buildAspNetCore { + $icu_attr version = \"${aspnetcore_version}\"; $(platform_sources "$aspnetcore_files") }; runtime_$major_minor_underscore = buildNetRuntime { + $icu_attr version = \"${runtime_version}\"; $(platform_sources "$runtime_files") }; sdk_$major_minor_underscore = buildNetSdk { + $icu_attr version = \"${sdk_version}\"; $(platform_sources "$sdk_files") }; " diff --git a/pkgs/development/compilers/gcc/11/default.nix b/pkgs/development/compilers/gcc/11/default.nix index 607c9eeac2f..1dc9ed0a267 100644 --- a/pkgs/development/compilers/gcc/11/default.nix +++ b/pkgs/development/compilers/gcc/11/default.nix @@ -3,6 +3,7 @@ , langAda ? false , langObjC ? stdenv.targetPlatform.isDarwin , langObjCpp ? stdenv.targetPlatform.isDarwin +, langD ? false , langGo ? false , reproducibleBuild ? true , profiledCompiler ? false @@ -71,6 +72,7 @@ let majorVersion = "11"; sha256 = ""; # TODO: uncomment and check hash when available. }) */ ++ optional langAda ../gnat-cflags-11.patch + ++ optional langD ../libphobos.patch ++ optional langFortran ../gfortran-driving.patch ++ optional (targetPlatform.libc == "musl" && targetPlatform.isPower) ../ppc-musl.patch @@ -220,6 +222,7 @@ stdenv.mkDerivation ({ enableShared langC + langD langCC langFortran langAda @@ -260,14 +263,14 @@ stdenv.mkDerivation ({ inherit (import ../common/extra-target-flags.nix { - inherit lib stdenv crossStageStatic libcCross threadsCross; + inherit lib stdenv crossStageStatic langD libcCross threadsCross; }) EXTRA_FLAGS_FOR_TARGET EXTRA_LDFLAGS_FOR_TARGET ; passthru = { - inherit langC langCC langObjC langObjCpp langAda langFortran langGo version; + inherit langC langCC langObjC langObjCpp langAda langFortran langGo langD version; isGNU = true; }; diff --git a/pkgs/development/compilers/gcc/12/default.nix b/pkgs/development/compilers/gcc/12/default.nix index 4f2da6903d3..fb76b039fb0 100644 --- a/pkgs/development/compilers/gcc/12/default.nix +++ b/pkgs/development/compilers/gcc/12/default.nix @@ -109,7 +109,7 @@ stdenv.mkDerivation ({ # This should kill all the stdinc frameworks that gcc and friends like to # insert into default search paths. + lib.optionalString hostPlatform.isDarwin '' - substituteInPlace gcc/config/darwin-c.c \ + substituteInPlace gcc/config/darwin-c.cc \ --replace 'if (stdinc)' 'if (0)' substituteInPlace libgcc/config/t-slibgcc-darwin \ diff --git a/pkgs/development/compilers/go/1.17.nix b/pkgs/development/compilers/go/1.17.nix index d9180e9001d..2c673b7dd4e 100644 --- a/pkgs/development/compilers/go/1.17.nix +++ b/pkgs/development/compilers/go/1.17.nix @@ -18,8 +18,12 @@ , buildPackages , pkgsBuildTarget , callPackage +, threadsCross ? null # for MinGW }: +# threadsCross is just for MinGW +assert threadsCross != null -> stdenv.targetPlatform.isWindows; + let go_bootstrap = buildPackages.callPackage ./bootstrap.nix { }; @@ -50,15 +54,17 @@ let # We need a target compiler which is still runnable at build time, # to handle the cross-building case where build != host == target targetCC = pkgsBuildTarget.targetPackages.stdenv.cc; + + isCross = stdenv.buildPlatform != stdenv.targetPlatform; in stdenv.mkDerivation rec { pname = "go"; - version = "1.17.9"; + version = "1.17.10"; src = fetchurl { url = "https://dl.google.com/go/go${version}.src.tar.gz"; - sha256 = "sha256-djrUuvuAqSBEWMX6K45zJ/qXGu5FQlLA42LBEjYVaBM="; + sha256 = "sha256-KZ5VrzDxVpGwFdjc+OyuckEkElaeWy7OIDYXU6RW8vk="; }; # perl is used for testing go vet @@ -71,6 +77,10 @@ stdenv.mkDerivation rec { depsTargetTargetPropagated = lib.optionals stdenv.isDarwin [ Security Foundation ]; + depsBuildTarget = lib.optional isCross targetCC; + + depsTargetTarget = lib.optional (threadsCross != null) threadsCross; + hardeningDisable = [ "all" ]; prePatch = '' @@ -167,7 +177,6 @@ stdenv.mkDerivation rec { ./remove-test-pie-1.15.patch ./creds-test.patch ./go-1.9-skip-flaky-19608.patch - ./go-1.9-skip-flaky-20072.patch ./skip-chown-tests-1.16.patch ./skip-external-network-tests-1.16.patch ./skip-nohup-tests.patch @@ -195,12 +204,12 @@ stdenv.mkDerivation rec { # {CC,CXX}_FOR_TARGET must be only set for cross compilation case as go expect those # to be different from CC/CXX CC_FOR_TARGET = - if (stdenv.buildPlatform != stdenv.targetPlatform) then + if isCross then "${targetCC}/bin/${targetCC.targetPrefix}cc" else null; CXX_FOR_TARGET = - if (stdenv.buildPlatform != stdenv.targetPlatform) then + if isCross then "${targetCC}/bin/${targetCC.targetPrefix}c++" else null; @@ -224,7 +233,7 @@ stdenv.mkDerivation rec { export PATH=$(pwd)/bin:$PATH - ${lib.optionalString (stdenv.buildPlatform != stdenv.targetPlatform) '' + ${lib.optionalString isCross '' # Independent from host/target, CC should produce code for the building system. # We only set it when cross-compiling. export CC=${buildPackages.stdenv.cc}/bin/cc diff --git a/pkgs/development/compilers/go/1.18.nix b/pkgs/development/compilers/go/1.18.nix index aad9c27fc56..48ca47321cd 100644 --- a/pkgs/development/compilers/go/1.18.nix +++ b/pkgs/development/compilers/go/1.18.nix @@ -18,8 +18,12 @@ , buildPackages , pkgsBuildTarget , callPackage +, threadsCross ? null # for MinGW }: +# threadsCross is just for MinGW +assert threadsCross != null -> stdenv.targetPlatform.isWindows; + let go_bootstrap = buildPackages.callPackage ./bootstrap.nix { }; @@ -50,6 +54,8 @@ let # We need a target compiler which is still runnable at build time, # to handle the cross-building case where build != host == target targetCC = pkgsBuildTarget.targetPackages.stdenv.cc; + + isCross = stdenv.buildPlatform != stdenv.targetPlatform; in stdenv.mkDerivation rec { @@ -71,6 +77,10 @@ stdenv.mkDerivation rec { depsTargetTargetPropagated = lib.optionals stdenv.isDarwin [ Security Foundation ]; + depsBuildTarget = lib.optional isCross targetCC; + + depsTargetTarget = lib.optional (threadsCross != null) threadsCross; + hardeningDisable = [ "all" ]; prePatch = '' @@ -188,12 +198,12 @@ stdenv.mkDerivation rec { # {CC,CXX}_FOR_TARGET must be only set for cross compilation case as go expect those # to be different from CC/CXX CC_FOR_TARGET = - if (stdenv.buildPlatform != stdenv.targetPlatform) then + if isCross then "${targetCC}/bin/${targetCC.targetPrefix}cc" else null; CXX_FOR_TARGET = - if (stdenv.buildPlatform != stdenv.targetPlatform) then + if isCross then "${targetCC}/bin/${targetCC.targetPrefix}c++" else null; @@ -217,7 +227,7 @@ stdenv.mkDerivation rec { export PATH=$(pwd)/bin:$PATH - ${lib.optionalString (stdenv.buildPlatform != stdenv.targetPlatform) '' + ${lib.optionalString isCross '' # Independent from host/target, CC should produce code for the building system. # We only set it when cross-compiling. export CC=${buildPackages.stdenv.cc}/bin/cc diff --git a/pkgs/development/compilers/intercal/default.nix b/pkgs/development/compilers/intercal/default.nix index d696b6801ed..f3383bdcb5f 100644 --- a/pkgs/development/compilers/intercal/default.nix +++ b/pkgs/development/compilers/intercal/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl +{ lib, stdenv, fetchurl, fetchpatch , pkg-config , bison, flex , makeWrapper }: @@ -14,6 +14,16 @@ stdenv.mkDerivation rec { sha256 = "1z2gpa5rbqb7jscqlf258k0b0jc7d2zkyipb5csjpj6d3sw45n4k"; }; + patches = [ + # Pull patch pending upstream inclusion for -fno-common toolchains: + # https://gitlab.com/esr/intercal/-/issues/4 + (fetchpatch { + name = "fno-common.patch"; + url = "https://gitweb.gentoo.org/repo/gentoo.git/plain/dev-lang/c-intercal/files/c-intercal-31.0-no-common.patch?id=a110a98b4de6f280d770ba3cc92a4612326205a3"; + sha256 = "03523fc40042r2ryq5val27prlim8pld4950qqpawpism4w3y1p2"; + }) + ]; + buildInputs = [ pkg-config bison flex makeWrapper ]; diff --git a/pkgs/development/compilers/jasmin-compiler/default.nix b/pkgs/development/compilers/jasmin-compiler/default.nix index dbacda5c479..140de424519 100644 --- a/pkgs/development/compilers/jasmin-compiler/default.nix +++ b/pkgs/development/compilers/jasmin-compiler/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "jasmin-compiler"; - version = "21.0"; + version = "2022.04.0"; src = fetchurl { url = "https://github.com/jasmin-lang/jasmin/releases/download/v${version}/jasmin-compiler-v${version}.tar.bz2"; - sha256 = "sha256:1px17fpc00gca5ayfcr4k008srkyw120c25rnyf7cgzfs1gpylj2"; + sha256 = "sha256:0yf3lp469m8jdpqmqq3sw3h8l3psrzdp134wp3l1q31j3akskn2s"; }; sourceRoot = "jasmin-compiler-v${version}/compiler"; diff --git a/pkgs/development/compilers/koka/default.nix b/pkgs/development/compilers/koka/default.nix index 51d0a9ed7b9..031aac03ecc 100644 --- a/pkgs/development/compilers/koka/default.nix +++ b/pkgs/development/compilers/koka/default.nix @@ -4,19 +4,25 @@ , parsec, process, regex-compat, text, time }: let - version = "2.3.6"; + version = "2.3.8"; src = fetchFromGitHub { owner = "koka-lang"; repo = "koka"; rev = "v${version}"; - sha256 = "sha256-AibS/HudJKFQZlTxGD5LfwjBawIy1xwO2Hm8qzAUP2M="; + sha256 = "sha256-4a9UwtiWq9eFpNHpcrlhYUwzXcr1EXFMjBmDFYP933U="; fetchSubmodules = true; }; kklib = stdenv.mkDerivation { pname = "kklib"; inherit version; src = "${src}/kklib"; + patches = [ ./kklib-mimalloc-macos-fix.diff ]; nativeBuildInputs = [ cmake ]; + outputs = [ "out" "dev" ]; + postInstall = '' + mkdir -p ''${!outputDev}/share/koka/v${version} + cp -a ../../kklib ''${!outputDev}/share/koka/v${version} + ''; }; inherit (pkgsHostTarget.targetPackages.stdenv) cc; runtimeDeps = [ @@ -40,7 +46,7 @@ mkDerivation rec { postInstall = '' mkdir -p $out/share/koka/v${version} cp -a lib $out/share/koka/v${version} - cp -a kklib $out/share/koka/v${version} + ln -s ${kklib.dev}/share/koka/v${version}/kklib $out/share/koka/v${version} wrapProgram "$out/bin/koka" \ --set CC "${lib.getBin cc}/bin/${cc.targetPrefix}cc" \ --prefix PATH : "${lib.makeSearchPath "bin" runtimeDeps}" diff --git a/pkgs/development/compilers/koka/kklib-mimalloc-macos-fix.diff b/pkgs/development/compilers/koka/kklib-mimalloc-macos-fix.diff new file mode 100644 index 00000000000..7d77bfd18af --- /dev/null +++ b/pkgs/development/compilers/koka/kklib-mimalloc-macos-fix.diff @@ -0,0 +1,10 @@ +--- kklib/mimalloc/src/random.c 1969-12-31 18:00:01.000000000 -0600 ++++ kklib/mimalloc/src/random.c.new 2022-01-16 19:43:54.000000000 -0600 +@@ -195,6 +195,7 @@ + #elif defined(__APPLE__) + #include <AvailabilityMacros.h> + #if defined(MAC_OS_X_VERSION_10_10) && MAC_OS_X_VERSION_MAX_ALLOWED >= MAC_OS_X_VERSION_10_10 ++#include <CommonCrypto/CommonCryptoError.h> + #include <CommonCrypto/CommonRandom.h> + #endif + static bool os_random_buf(void* buf, size_t buf_len) { diff --git a/pkgs/development/compilers/mruby/default.nix b/pkgs/development/compilers/mruby/default.nix index 6651df5a2f0..f4b1c48d229 100644 --- a/pkgs/development/compilers/mruby/default.nix +++ b/pkgs/development/compilers/mruby/default.nix @@ -1,24 +1,16 @@ -{ lib, stdenv, ruby, bison, rake, fetchFromGitHub, fetchpatch }: +{ lib, stdenv, ruby, bison, rake, fetchFromGitHub }: stdenv.mkDerivation rec { pname = "mruby"; - version = "3.0.0"; + version = "3.1.0"; src = fetchFromGitHub { owner = "mruby"; repo = "mruby"; rev = version; - sha256 = "sha256-C3K7ZooaOMa+V2HjxwiKxrrMb7ffl4QAgPsftRtb60c="; + sha256 = "0gnzip7qfadnl0r1k8bpc9a6796sy503h77ggds02wrz7mpq32nf"; }; - patches = [ - (fetchpatch { - name = "CVE-2022-1212.patch"; - url = "https://github.com/mruby/mruby/commit/3cf291f72224715942beaf8553e42ba8891ab3c6.patch"; - sha256 = "1bl8wm6v7v18zgxqvm4kbn8g97a75phzrdah279xqw1qvplbd2w7"; - }) - ]; - nativeBuildInputs = [ ruby bison rake ]; # Necessary so it uses `gcc` instead of `ld` for linking. diff --git a/pkgs/development/compilers/ocaml/ber-metaocaml.nix b/pkgs/development/compilers/ocaml/ber-metaocaml.nix index 92fcb7c04c7..edb3c2e385f 100644 --- a/pkgs/development/compilers/ocaml/ber-metaocaml.nix +++ b/pkgs/development/compilers/ocaml/ber-metaocaml.nix @@ -1,6 +1,7 @@ { lib, stdenv, fetchurl , ncurses , libX11, xorgproto, buildEnv +, fetchpatch }: let @@ -41,6 +42,17 @@ stdenv.mkDerivation rec { dontStrip = true; buildInputs = [ ncurses ] ++ optionals useX11 x11deps; + patches = [ + # glibc 2.34 changed SIGSTKSZ from a #define'd integer to an + # expression involving a function call. This broke all code that + # used SIGSTKSZ as the size of a statically-allocated array. This + # patch is also applied by the ocaml/4.07.nix expression. + (fetchpatch { + url = "https://github.com/ocaml/ocaml/commit/00b8c4d503732343d5d01761ad09650fe50ff3a0.patch"; + sha256 = "sha256:02cfya5ff5szx0fsl5x8ax76jyrla9zmf3qxavf3adhwq5ssrfcv"; + }) + ]; + postConfigure = '' tar -xvzf $metaocaml cd ${pname}-${version} diff --git a/pkgs/development/compilers/openjdk/darwin/17.nix b/pkgs/development/compilers/openjdk/darwin/17.nix index 2720a887565..51f12864de8 100644 --- a/pkgs/development/compilers/openjdk/darwin/17.nix +++ b/pkgs/development/compilers/openjdk/darwin/17.nix @@ -5,16 +5,16 @@ let dist = { x86_64-darwin = { arch = "x64"; - zuluVersion = "17.30.15"; - jdkVersion = "17.0.1"; - sha256 = "sha256-CdZP5XY3O0MUQigRvIQC+7dwAXaCKw4eK/L/imytEOs="; + zuluVersion = "17.34.19"; + jdkVersion = "17.0.3"; + sha256 = "sha256-qImyxVC2y2QhxuVZwamKPyo46+n+7ytIFXpYI0e6w2c="; }; aarch64-darwin = { arch = "aarch64"; - zuluVersion = "17.30.15"; - jdkVersion = "17.0.1"; - sha256 = "sha256-zhBCXOnO/fsj6+q+vAlEz7QVMRFKLVvYnjwZzFz6mRM="; + zuluVersion = "17.34.19"; + jdkVersion = "17.0.3"; + sha256 = "sha256-eaRX8Qa/Mqr9JhpHSEcf0Q9c4qmqLMgWqRhkEEwAjf8="; }; }."${stdenv.hostPlatform.system}"; diff --git a/pkgs/development/compilers/purescript/purescript/default.nix b/pkgs/development/compilers/purescript/purescript/default.nix index 4c7311d5325..46d74309660 100644 --- a/pkgs/development/compilers/purescript/purescript/default.nix +++ b/pkgs/development/compilers/purescript/purescript/default.nix @@ -18,7 +18,7 @@ let in stdenv.mkDerivation rec { pname = "purescript"; - version = "0.15.0"; + version = "0.15.2"; # These hashes can be updated automatically by running the ./update.sh script. src = @@ -26,12 +26,12 @@ in stdenv.mkDerivation rec { then fetchurl { url = "https://github.com/${pname}/${pname}/releases/download/v${version}/macos.tar.gz"; - sha256 = "09d9pwba6fzc08m3nkc7xni29yr12gw5fj00aa77n9kxmsba0fkb"; + sha256 = "06fsq9ynfvfqn3ac5jxdj81lmzd6bh84p7jz5qib31h27iy5aq4h"; } else fetchurl { url = "https://github.com/${pname}/${pname}/releases/download/v${version}/linux64.tar.gz"; - sha256 = "1ygp6wvbgl3y15wq1q41j9kg2ndaxr32rpgbzfzyd9zb8n9z8lpx"; + sha256 = "1p37k6briczw6gvw04idkx734ms1swgrx9sl4hi6xwvxkfp1nm0m"; }; diff --git a/pkgs/development/compilers/spirv-llvm-translator/default.nix b/pkgs/development/compilers/spirv-llvm-translator/default.nix index 3ae837ac46b..b0ba8508fc3 100644 --- a/pkgs/development/compilers/spirv-llvm-translator/default.nix +++ b/pkgs/development/compilers/spirv-llvm-translator/default.nix @@ -25,8 +25,6 @@ stdenv.mkDerivation rec { checkInputs = [ lit ]; - makeFlags = [ "llvm-spirv" ]; - cmakeFlags = [ "-DLLVM_INCLUDE_TESTS=ON" "-DLLVM_DIR=${llvm_11.dev}" @@ -37,6 +35,12 @@ stdenv.mkDerivation rec { # FIXME: CMake tries to run "/llvm-lit" which of course doesn't exist doCheck = false; + makeFlags = [ "all" "llvm-spirv" ]; + + postInstall = '' + install -D tools/llvm-spirv/llvm-spirv $out/bin/llvm-spirv + ''; + meta = with lib; { homepage = "https://github.com/KhronosGroup/SPIRV-LLVM-Translator"; description = "A tool and a library for bi-directional translation between SPIR-V and LLVM IR"; diff --git a/pkgs/development/compilers/tinygo/0001-Makefile.patch b/pkgs/development/compilers/tinygo/0001-Makefile.patch new file mode 100644 index 00000000000..81774b6e0d6 --- /dev/null +++ b/pkgs/development/compilers/tinygo/0001-Makefile.patch @@ -0,0 +1,57 @@ +From fcae473c4b6ac2120ec75c321d6db850d8ecd6a9 Mon Sep 17 00:00:00 2001 +From: =?UTF-8?q?Mustafa=20=C3=87al=C4=B1=C5=9Fkan?= <muscaln@protonmail.com> +Date: Sat, 30 Apr 2022 16:37:44 +0300 +Subject: [PATCH 1/3] Makefile + + +diff --git a/Makefile b/Makefile +index dc388c21..7efc9901 100644 +--- a/Makefile ++++ b/Makefile +@@ -14,11 +14,6 @@ LLVM_VERSIONS = 14 13 12 11 + errifempty = $(if $(1),$(1),$(error $(2))) + detect = $(shell which $(call errifempty,$(firstword $(foreach p,$(2),$(shell command -v $(p) 2> /dev/null && echo $(p)))),failed to locate $(1) at any of: $(2))) + toolSearchPathsVersion = $(1)-$(2) +-ifeq ($(shell uname -s),Darwin) +- # Also explicitly search Brew's copy, which is not in PATH by default. +- BREW_PREFIX := $(shell brew --prefix) +- toolSearchPathsVersion += $(BREW_PREFIX)/opt/llvm@$(2)/bin/$(1)-$(2) $(BREW_PREFIX)/opt/llvm@$(2)/bin/$(1) +-endif + # First search for a custom built copy, then move on to explicitly version-tagged binaries, then just see if the tool is in path with its normal name. + findLLVMTool = $(call detect,$(1),$(abspath llvm-build/bin/$(1)) $(foreach ver,$(LLVM_VERSIONS),$(call toolSearchPathsVersion,$(1),$(ver))) $(1)) + CLANG ?= $(call findLLVMTool,clang) +@@ -644,9 +639,8 @@ endif + wasmtest: + $(GO) test ./tests/wasm + +-build/release: tinygo gen-device wasi-libc $(if $(filter 1,$(USE_SYSTEM_BINARYEN)),,binaryen) ++build/release: + @mkdir -p build/release/tinygo/bin +- @mkdir -p build/release/tinygo/lib/clang/include + @mkdir -p build/release/tinygo/lib/CMSIS/CMSIS + @mkdir -p build/release/tinygo/lib/macos-minimal-sdk + @mkdir -p build/release/tinygo/lib/mingw-w64/mingw-w64-crt/lib-common +@@ -663,10 +657,6 @@ build/release: tinygo gen-device wasi-libc $(if $(filter 1,$(USE_SYSTEM_BINARYEN + @mkdir -p build/release/tinygo/pkg/thumbv7em-unknown-unknown-eabi-cortex-m4 + @echo copying source files + @cp -p build/tinygo$(EXE) build/release/tinygo/bin +-ifneq ($(USE_SYSTEM_BINARYEN),1) +- @cp -p build/wasm-opt$(EXE) build/release/tinygo/bin +-endif +- @cp -p $(abspath $(CLANG_SRC))/lib/Headers/*.h build/release/tinygo/lib/clang/include + @cp -rp lib/CMSIS/CMSIS/Include build/release/tinygo/lib/CMSIS/CMSIS + @cp -rp lib/CMSIS/README.md build/release/tinygo/lib/CMSIS + @cp -rp lib/macos-minimal-sdk/* build/release/tinygo/lib/macos-minimal-sdk +@@ -705,8 +695,7 @@ endif + @cp -rp lib/picolibc/newlib/libm/common build/release/tinygo/lib/picolibc/newlib/libm + @cp -rp lib/picolibc-stdio.c build/release/tinygo/lib + @cp -rp lib/wasi-libc/sysroot build/release/tinygo/lib/wasi-libc/sysroot +- @cp -rp llvm-project/compiler-rt/lib/builtins build/release/tinygo/lib/compiler-rt-builtins +- @cp -rp llvm-project/compiler-rt/LICENSE.TXT build/release/tinygo/lib/compiler-rt-builtins ++ @cp -rp lib/compiler-rt-builtins build/release/tinygo/lib/compiler-rt-builtins + @cp -rp src build/release/tinygo/src + @cp -rp targets build/release/tinygo/targets + ./build/tinygo build-library -target=cortex-m0 -o build/release/tinygo/pkg/thumbv6m-unknown-unknown-eabi-cortex-m0/compiler-rt compiler-rt +-- +2.36.0 + diff --git a/pkgs/development/compilers/tinygo/0002-Add-clang-header-path.patch b/pkgs/development/compilers/tinygo/0002-Add-clang-header-path.patch new file mode 100644 index 00000000000..875a2521a92 --- /dev/null +++ b/pkgs/development/compilers/tinygo/0002-Add-clang-header-path.patch @@ -0,0 +1,55 @@ +From 4ee942ccc7cdb06ee51490e9cb44ecb36b25378a Mon Sep 17 00:00:00 2001 +From: =?UTF-8?q?Mustafa=20=C3=87al=C4=B1=C5=9Fkan?= <muscaln@protonmail.com> +Date: Sat, 30 Apr 2022 16:18:31 +0300 +Subject: [PATCH 2/3] Add clang header path + + +diff --git a/builder/builtins.go b/builder/builtins.go +index 479b541d..b35283c6 100644 +--- a/builder/builtins.go ++++ b/builder/builtins.go +@@ -164,7 +164,7 @@ var aeabiBuiltins = []string{ + var CompilerRT = Library{ + name: "compiler-rt", + cflags: func(target, headerPath string) []string { +- return []string{"-Werror", "-Wall", "-std=c11", "-nostdlibinc"} ++ return []string{"-Werror", "-Wall", "-std=c11", "-isystem", "@clang_include@"} + }, + sourceDir: func() string { + llvmDir := filepath.Join(goenv.Get("TINYGOROOT"), "llvm-project/compiler-rt/lib/builtins") +diff --git a/builder/picolibc.go b/builder/picolibc.go +index f1b061ae..159f90cf 100644 +--- a/builder/picolibc.go ++++ b/builder/picolibc.go +@@ -27,7 +27,7 @@ var Picolibc = Library{ + "-D_COMPILING_NEWLIB", + "-DHAVE_ALIAS_ATTRIBUTE", + "-DTINY_STDIO", +- "-nostdlibinc", ++ "-isystem", "@clang_include@", + "-isystem", picolibcDir + "/include", + "-I" + picolibcDir + "/tinystdio", + "-I" + headerPath, +diff --git a/compileopts/config.go b/compileopts/config.go +index b30e653e..7561b3f2 100644 +--- a/compileopts/config.go ++++ b/compileopts/config.go +@@ -288,6 +288,7 @@ func (c *Config) CFlags() []string { + path, _ := c.LibcPath("picolibc") + cflags = append(cflags, + "--sysroot="+path, ++ "-isystem", "@clang_include@", + "-isystem", filepath.Join(path, "include"), // necessary for Xtensa + "-isystem", filepath.Join(picolibcDir, "include"), + "-isystem", filepath.Join(picolibcDir, "tinystdio"), +@@ -297,7 +298,6 @@ func (c *Config) CFlags() []string { + path, _ := c.LibcPath("musl") + arch := MuslArchitecture(c.Triple()) + cflags = append(cflags, +- "-nostdlibinc", + "-isystem", filepath.Join(path, "include"), + "-isystem", filepath.Join(root, "lib", "musl", "arch", arch), + "-isystem", filepath.Join(root, "lib", "musl", "include"), +-- +2.36.0 + diff --git a/pkgs/development/compilers/tinygo/default.nix b/pkgs/development/compilers/tinygo/default.nix index 935260dbcab..b335df487c8 100644 --- a/pkgs/development/compilers/tinygo/default.nix +++ b/pkgs/development/compilers/tinygo/default.nix @@ -1,64 +1,147 @@ -{ lib, buildGoModule, fetchFromGitHub, llvm, clang-unwrapped, lld, avrgcc -, avrdude, openocd, gcc-arm-embedded, makeWrapper, fetchurl }: +{ stdenv +, lib +, buildPackages +, buildGoModule +, fetchFromGitHub +, makeWrapper +, substituteAll +, llvmPackages +, go +, libffi +, zlib +, ncurses +, libxml2 +, xar +, wasi-libc +, avrgcc +, binaryen +, avrdude +, gdb +, openocd +}: -let main = ./main.go; - gomod = ./go.mod; +let + llvmMajor = lib.versions.major llvm.version; + inherit (llvmPackages) llvm clang compiler-rt lld; in + buildGoModule rec { pname = "tinygo"; - version = "0.16.0"; + version = "0.23.0"; src = fetchFromGitHub { owner = "tinygo-org"; repo = "tinygo"; rev = "v${version}"; - sha256 = "063aszbsnr0myq56kms1slmrfs7m4nmg0zgh2p66lxdsifrfly7j"; + sha256 = "sha256-YgQGAQJw9Xyw5BF2d9uZTQHfjHsu2evZGo4RV9DtStE="; fetchSubmodules = true; }; - overrideModAttrs = (_: { - patches = []; - preBuild = '' - rm -rf * - cp ${main} main.go - cp ${gomod} go.mod - chmod +w go.mod - ''; - }); + vendorSha256 = "sha256-fK8BlCh+1NtHW6MwW68iSIB+Sw6AK+g3y4lMyMYrXkk="; + + patches = [ + ./0001-Makefile.patch + + (substituteAll { + src = ./0002-Add-clang-header-path.patch; + clang_include = "${clang.cc.lib}/lib/clang/${clang.cc.version}/include"; + }) + ]; - preBuild = "cp ${gomod} go.mod"; + checkInputs = [ avrgcc binaryen ]; + nativeBuildInputs = [ go makeWrapper ]; + buildInputs = [ llvm clang.cc ] + ++ lib.optionals stdenv.isDarwin [ zlib ncurses libffi libxml2 xar ]; - postBuild = "make gen-device"; + doCheck = stdenv.buildPlatform == stdenv.hostPlatform; - vendorSha256 = "12k2gin0v7aqz5543m12yhifc0xsz26qyqra5l4c68xizvzcvkxb"; + allowGoReference = true; + tags = [ "llvm${llvmMajor}" ]; + subPackages = [ "." ]; - doCheck = false; + # Output contains static libraries for different arm cpus + # and stripping could mess up these so only strip the compiler + stripDebugList = [ "bin" ]; - prePatch = '' - sed -i s/', "-nostdlibinc"'// builder/builtins.go - sed -i s/'"-nostdlibinc", '// compileopts/config.go builder/picolibc.go + postConfigure = lib.optionalString stdenv.isDarwin '' + for i in vendor/tinygo.org/x/go-llvm/llvm_config_darwin*; do + substituteInPlace $i --replace "curses" "ncurses" + done ''; - subPackages = [ "." ]; - nativeBuildInputs = [ makeWrapper ]; - buildInputs = [ llvm clang-unwrapped ]; - propagatedBuildInputs = [ lld avrgcc avrdude openocd gcc-arm-embedded ]; - - postInstall = '' - mkdir -p $out/share/tinygo - cp -a lib src targets $out/share/tinygo - wrapProgram $out/bin/tinygo --prefix "TINYGOROOT" : "$out/share/tinygo" \ - --prefix "PATH" : "$out/libexec/tinygo" + postPatch = '' + # Copy wasi-libc, symlink seems not working + rm -rf lib/wasi-libc/* + mkdir -p lib/wasi-libc/sysroot/lib/wasm32-wasi lib/wasi-libc/sysroot/include + cp -a ${wasi-libc}/lib/* lib/wasi-libc/sysroot/lib/wasm32-wasi/ + cp -a ${wasi-libc.dev}/include/* lib/wasi-libc/sysroot/include/ + + # Borrow compiler-rt builtins from our source + # See https://github.com/tinygo-org/tinygo/pull/2471 + mkdir -p lib/compiler-rt-builtins + cp -a ${compiler-rt.src}/compiler-rt/lib/builtins/* lib/compiler-rt-builtins/ + + substituteInPlace Makefile \ + --replace "\$(TINYGO)" "$(pwd)/build/tinygo" \ + --replace "build/release/tinygo/bin" "$out/bin" \ + --replace "build/release/" "$out/share/" + + # TODO: Fix mingw and darwin + # Disable windows and darwin cross-compile tests + sed -i "/GOOS=windows/d" Makefile + sed -i "/GOOS=darwin/d" Makefile + + # tinygo needs versioned binaries mkdir -p $out/libexec/tinygo - ln -s ${clang-unwrapped}/bin/clang $out/libexec/tinygo/clang-10 - ln -s ${lld}/bin/lld $out/libexec/tinygo/ld.lld-10 - ln -sf $out/bin $out/share/tinygo + ln -s ${lib.getBin clang.cc}/bin/clang $out/libexec/tinygo/clang-${llvmMajor} + ln -s ${lib.getBin lld}/bin/ld.lld $out/libexec/tinygo/ld.lld-${llvmMajor} + ln -s ${lib.getBin lld}/bin/wasm-ld $out/libexec/tinygo/wasm-ld-${llvmMajor} + ln -s ${gdb}/bin/gdb $out/libexec/tinygo/gdb-multiarch + '' + lib.optionalString (stdenv.buildPlatform != stdenv.hostPlatform) '' + substituteInPlace Makefile \ + --replace "./build/tinygo" "${buildPackages.tinygo}/bin/tinygo" + ''; + + preBuild = '' + export HOME=$TMPDIR + export GOCACHE=$TMPDIR/go-cache + export GOPATH=$TMPDIR/go + export PATH=$out/libexec/tinygo:$PATH ''; + postBuild = '' + # Move binary + mkdir -p build + mv $GOPATH/bin/tinygo build/tinygo + + make gen-device + ''; + + checkPhase = '' + runHook preCheck + make smoketest XTENSA=0 + runHook postCheck + ''; + + installPhase = '' + runHook preInstall + + make build/release + + wrapProgram $out/bin/tinygo \ + --set TINYGOROOT $out/share/tinygo \ + --prefix PATH : ${lib.makeBinPath [ go avrdude openocd avrgcc binaryen ]}:$out/libexec/tinygo + + runHook postInstall + ''; + + disallowedReferences = [ wasi-libc ]; + meta = with lib; { homepage = "https://tinygo.org/"; description = "Go compiler for small places"; license = licenses.bsd3; - maintainers = with maintainers; [ Madouura ]; + maintainers = with maintainers; [ Madouura muscaln ]; + broken = stdenv.isDarwin; }; } diff --git a/pkgs/development/compilers/tinygo/go.mod b/pkgs/development/compilers/tinygo/go.mod deleted file mode 100644 index bab259ae48d..00000000000 --- a/pkgs/development/compilers/tinygo/go.mod +++ /dev/null @@ -1,14 +0,0 @@ -module github.com/tinygo-org/tinygo - -go 1.11 - -require ( - github.com/blakesmith/ar v0.0.0-20150311145944-8bd4349a67f2 - github.com/chromedp/cdproto v0.0.0-20200709115526-d1f6fc58448b - github.com/chromedp/chromedp v0.5.4-0.20200303084119-2bb39134ab9e - github.com/google/shlex v0.0.0-20181106134648-c34317bd91bf - github.com/marcinbor85/gohex v0.0.0-20200531091804-343a4b548892 - go.bug.st/serial v1.0.0 - golang.org/x/tools v0.0.0-20200216192241-b320d3a0f5a2 - tinygo.org/x/go-llvm v0.0.0-20201104183921-570e7a6841d9 -) diff --git a/pkgs/development/compilers/tinygo/main.go b/pkgs/development/compilers/tinygo/main.go deleted file mode 100644 index 050cf8afe39..00000000000 --- a/pkgs/development/compilers/tinygo/main.go +++ /dev/null @@ -1,18 +0,0 @@ -package main - -import ( - "fmt" - - _ "github.com/blakesmith/ar" - _ "github.com/google/shlex" - _ "github.com/marcinbor85/gohex" - _ "go.bug.st/serial" - _ "golang.org/x/tools/go/ast/astutil" - _ "golang.org/x/tools/go/ssa" - _ "google.golang.org/appengine" - _ "tinygo.org/x/go-llvm" -) - -func main() { - fmt.Println("vim-go") -} diff --git a/pkgs/development/compilers/vlang/default.nix b/pkgs/development/compilers/vlang/default.nix index 065e4462f2e..64ccb2fc16e 100644 --- a/pkgs/development/compilers/vlang/default.nix +++ b/pkgs/development/compilers/vlang/default.nix @@ -2,20 +2,29 @@ stdenv.mkDerivation rec { pname = "vlang"; - version = "weekly.2021.51"; + version = "weekly.2022.20"; src = fetchFromGitHub { owner = "vlang"; repo = "v"; rev = version; - sha256 = "1jvq3fxckl2jidiigkvclacjxbg5k38268mck7bl1ky1yspgfrnq"; + sha256 = "1isbyfs98bdbm2qjf7q4bqbpsmdiqlavn3gznwr12bkvhnsf4j3x"; }; + # Required for bootstrap. vc = fetchFromGitHub { owner = "vlang"; repo = "vc"; - rev = "c8ed2cd82b247e94c33217dba35c420cfc02fef3"; - sha256 = "1acgx1qp480jmsv1xvqy1zf7iyy90mvg9x1m1b0zrwx09wz4y1cq"; + rev = "167f262866090493650f58832d62d910999dd5a4"; + sha256 = "1xax8355qkrccjcmx24gcab88xnrqj15mhqy0bgp3v2rb1hw1n3a"; + }; + + # Required for vdoc. + markdown = fetchFromGitHub { + owner = "vlang"; + repo = "markdown"; + rev = "bbbd324a361e404ce0682fc00666df3a7877b398"; + sha256 = "0cawzizr3rjz81blpvxvxrcvcdai1adj66885ss390444qq1fnv7"; }; propagatedBuildInputs = [ glfw freetype openssl ] @@ -26,22 +35,47 @@ stdenv.mkDerivation rec { makeFlags = [ "local=1" "VC=${vc}" - # vlang seems to want to write to $HOME/.vmodules , so lets give - # it a writable HOME - "HOME=$TMPDIR" ]; + preBuild = '' + export HOME=$(mktemp -d) + ''; + + # vcreate_test.v requires git, so we must remove it when building the tools. + # vtest.v fails on Darwin, so let's just disable it for now. + preInstall = '' + mv cmd/tools/vcreate_test.v $HOME/vcreate_test.v + '' + lib.optionalString stdenv.isDarwin '' + mv cmd/tools/vtest.v $HOME/vtest.v + ''; + installPhase = '' runHook preInstall + mkdir -p $out/{bin,lib,share} cp -r examples $out/share cp -r {cmd,vlib,thirdparty} $out/lib - mv v $out/lib + cp v $out/lib ln -s $out/lib/v $out/bin/v wrapProgram $out/bin/v --prefix PATH : ${lib.makeBinPath [ stdenv.cc ]} + + mkdir -p $HOME/.vmodules; + ln -sf ${markdown} $HOME/.vmodules/markdown + $out/lib/v -v build-tools + $out/lib/v -v $out/lib/cmd/tools/vdoc + $out/lib/v -v $out/lib/cmd/tools/vast + $out/lib/v -v $out/lib/cmd/tools/vvet + runHook postInstall ''; + # Return vcreate_test.v and vtest.v, so the user can use it. + postInstall = '' + cp $HOME/vcreate_test.v $out/lib/cmd/tools/vcreate_test.v + '' + lib.optionalString stdenv.isDarwin '' + cp $HOME/vtest.v $out/lib/cmd/tools/vtest.v + ''; + meta = with lib; { homepage = "https://vlang.io/"; description = "Simple, fast, safe, compiled language for developing maintainable software"; diff --git a/pkgs/development/compilers/vyper/default.nix b/pkgs/development/compilers/vyper/default.nix index 518b230c838..ee24cc646e4 100644 --- a/pkgs/development/compilers/vyper/default.nix +++ b/pkgs/development/compilers/vyper/default.nix @@ -2,7 +2,6 @@ , buildPythonPackage , fetchPypi , pythonOlder -, pythonAtLeast , pythonRelaxDepsHook , writeText , asttokens @@ -13,6 +12,7 @@ , sphinx_rtd_theme , pytest-runner , setuptools-scm +, git }: let @@ -27,17 +27,21 @@ let in buildPythonPackage rec { pname = "vyper"; - version = "0.3.1"; + version = "0.3.3"; format = "setuptools"; - disabled = pythonOlder "3.7" || pythonAtLeast "3.10"; + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-fXug5v3zstz19uexMWokHBVsfcl2ZCdIOIXKeLVyh/Q="; + sha256 = "sha256-BAnNj27B1HAb9VVDA69bFGbQjeOpl0g5EB2juajqBAw="; }; nativeBuildInputs = [ + # Git is used in setup.py to compute version information during building + # ever since https://github.com/vyperlang/vyper/pull/2816 + git + pythonRelaxDepsHook pytest-runner setuptools-scm diff --git a/pkgs/development/compilers/yap/default.nix b/pkgs/development/compilers/yap/default.nix index 4428d4dbba6..10ba3c55901 100644 --- a/pkgs/development/compilers/yap/default.nix +++ b/pkgs/development/compilers/yap/default.nix @@ -13,7 +13,11 @@ stdenv.mkDerivation rec { configureFlags = [ "--enable-tabling=yes" ]; - NIX_CFLAGS_COMPILE = "-fpermissive"; + # -fcommon: workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: libYap.a(pl-dtoa.o):/build/yap-6.3.3/H/pl-yap.h:230: multiple definition of `ATOM_'; + # libYap.a(pl-buffer.o):/build/yap-6.3.3/H/pl-yap.h:230: first defined here + NIX_CFLAGS_COMPILE = "-fpermissive -fcommon"; meta = { homepage = "http://www.dcc.fc.up.pt/~vsc/Yap/"; diff --git a/pkgs/development/coq-modules/interval/default.nix b/pkgs/development/coq-modules/interval/default.nix index b9257d415e5..375fae5b074 100644 --- a/pkgs/development/coq-modules/interval/default.nix +++ b/pkgs/development/coq-modules/interval/default.nix @@ -6,12 +6,12 @@ mkCoqDerivation rec { domain = "gitlab.inria.fr"; inherit version; defaultVersion = with lib.versions; lib.switch coq.coq-version [ - { case = isGe "8.8"; out = "4.4.0"; } + { case = isGe "8.8"; out = "4.5.1"; } { case = range "8.8" "8.12"; out = "4.0.0"; } { case = range "8.7" "8.11"; out = "3.4.2"; } { case = range "8.5" "8.6"; out = "3.3.0"; } ] null; - release."4.4.0".sha256 = "sha256-0+9AatTIEsjul0RXoOw6zWGEbGDVmuy7XuyrZNBZ8Kk="; + release."4.5.1".sha256 = "sha256-5OxbSPdw/1FFENubulKSk6fEIEYSPCxfvMMgtgN6j6s="; release."4.3.0".sha256 = "sha256-k8DLC4HYYpHeEEgXUafS8jkaECqlM+/CoYaInmUTYko="; release."4.2.0".sha256 = "sha256-SD5thgpirs3wmZBICjXGpoefg9AAXyExb5t8tz3iZhE="; release."4.1.1".sha256 = "sha256-h2NJ6sZt1C/88v7W2xyuftEDoyRt3H6kqm5g2hc1aoU="; diff --git a/pkgs/development/embedded/blackmagic/default.nix b/pkgs/development/embedded/blackmagic/default.nix index f3b3b0b2d04..abb5e19f8bf 100644 --- a/pkgs/development/embedded/blackmagic/default.nix +++ b/pkgs/development/embedded/blackmagic/default.nix @@ -1,40 +1,37 @@ -{ stdenv, lib, fetchFromGitHub, fetchpatch -, gcc-arm-embedded, libftdi1, libusb-compat-0_1, pkg-config +{ stdenv, lib +, fetchFromGitHub +, gcc-arm-embedded +, pkg-config , python3 +, hidapi +, libftdi1 +, libusb1 }: -with lib; - stdenv.mkDerivation rec { pname = "blackmagic"; - version = "unstable-2020-08-05"; + version = "unstable-2022-04-16"; # `git describe --always` - firmwareVersion = "v1.6.1-539-gdd74ec8"; + firmwareVersion = "v1.7.1-415-gc4869a5"; src = fetchFromGitHub { owner = "blacksphere"; repo = "blackmagic"; - rev = "dd74ec8e6f734302daa1ee361af88dfb5043f166"; - sha256 = "18w8y64fs7wfdypa4vm3migk5w095z8nbd8qp795f322mf2bz281"; + rev = "c4869a54733ae92099a7316954e34d1ab7b6097c"; + hash = "sha256-0MC1v/5u/txSshxkOI5TErMRRrYCcHly3qbVTAk9Vc0="; fetchSubmodules = true; }; - patches = [ - # Fix deprecation warning with libftdi 1.5 - (fetchpatch { - url = "https://github.com/blacksphere/blackmagic/commit/dea4be2539c5ea63836ec78dca08b52fa8b26ab5.patch"; - sha256 = "0f81simij1wdhifsxaavalc6yxzagfbgwry969dbjmxqzvrsrds5"; - }) - ]; - nativeBuildInputs = [ - gcc-arm-embedded pkg-config + gcc-arm-embedded + pkg-config python3 ]; buildInputs = [ + hidapi libftdi1 - libusb-compat-0_1 + libusb1 ]; strictDeps = true; @@ -50,12 +47,17 @@ stdenv.mkDerivation rec { done ''; - buildPhase = "${stdenv.shell} ${./helper.sh}"; + buildPhase = '' + runHook preBuild + ${stdenv.shell} ${./helper.sh} + runHook postBuild + ''; + dontInstall = true; enableParallelBuilding = true; - meta = { + meta = with lib; { description = "In-application debugger for ARM Cortex microcontrollers"; longDescription = '' The Black Magic Probe is a modern, in-application debugging tool diff --git a/pkgs/development/go-modules/generic/default.nix b/pkgs/development/go-modules/generic/default.nix index 502a981596e..4dff2d82848 100644 --- a/pkgs/development/go-modules/generic/default.nix +++ b/pkgs/development/go-modules/generic/default.nix @@ -79,12 +79,11 @@ let GO111MODULE = "on"; impureEnvVars = lib.fetchers.proxyImpureEnvVars ++ [ - "GIT_PROXY_COMMAND" "SOCKS_SERVER" + "GIT_PROXY_COMMAND" "SOCKS_SERVER" "GOPROXY" ]; configurePhase = args.modConfigurePhase or '' runHook preConfigure - export GOCACHE=$TMPDIR/go-cache export GOPATH="$TMPDIR/go" cd "${modRoot}" diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix index 38ed06e44ce..349931a22c9 100644 --- a/pkgs/development/haskell-modules/configuration-common.nix +++ b/pkgs/development/haskell-modules/configuration-common.nix @@ -176,6 +176,15 @@ self: super: { vector = doJailbreak (if pkgs.stdenv.isi686 then appendConfigureFlag "--ghc-options=-msse2" super.vector else super.vector); inline-c-cpp = overrideCabal (drv: { + patches = drv.patches or [] ++ [ + (fetchpatch { + # awaiting release >0.5.0.0 + url = "https://github.com/fpco/inline-c/commit/e176b8e8c3c94e7d8289a8b7cc4ce8e737741730.patch"; + name = "inline-c-cpp-pr-132-1.patch"; + sha256 = "sha256-CdZXAT3Ar4KKDGyAUu8A7hzddKe5/AuMKoZSjt3o0UE="; + stripLen = 1; + }) + ]; postPatch = (drv.postPatch or "") + '' substituteInPlace inline-c-cpp.cabal --replace "-optc-std=c++11" "" ''; @@ -208,6 +217,7 @@ self: super: { persistent-zookeeper = dontCheck super.persistent-zookeeper; pocket-dns = dontCheck super.pocket-dns; postgresql-simple = dontCheck super.postgresql-simple; + squeal-postgresql = dontCheck super.squeal-postgresql; postgrest = dontCheck super.postgrest; postgrest-ws = dontCheck super.postgrest-ws; snowball = dontCheck super.snowball; @@ -334,15 +344,7 @@ self: super: { matplotlib = dontCheck super.matplotlib; # https://github.com/matterhorn-chat/matterhorn/issues/679 they do not want to be on stackage - matterhorn = doJailbreak (super.matterhorn.overrideScope (self: super: { - brick = self.brick_0_64_2; - # Doesn't support aeson 2.0 - # https://github.com/matterhorn-chat/matterhorn/issues/759 - aeson = self.aeson_1_5_6_0; - })); - mattermost-api = super.mattermost-api.override { - aeson = self.aeson_1_5_6_0; - }; + matterhorn = doJailbreak super.matterhorn; memcache = dontCheck super.memcache; metrics = dontCheck super.metrics; @@ -858,9 +860,10 @@ self: super: { testToolDepends = drv.testToolDepends or [] ++ [ pkgs.git ]; }) (super.sensei.overrideScope (self: super: { hspec-meta = self.hspec-meta_2_9_3; - hspec = self.hspec_2_9_7; - hspec-core = dontCheck self.hspec-core_2_9_7; - hspec-discover = self.hspec-discover_2_9_7; + hspec = self.hspec_2_10_0; + hspec-core = dontCheck self.hspec-core_2_10_0; + hspec-discover = self.hspec-discover_2_10_0; + shelly = dontCheck super.shelly; # disable checks, because the newer hspec in this overrideScope doesn‘t work with newest hspec-contrib })); # Depends on broken fluid. @@ -2011,8 +2014,6 @@ self: super: { haveibeenpwned = doJailbreak super.haveibeenpwned; # Too strict version bounds on ghc-events - # https://github.com/haskell/ThreadScope/issues/118 - threadscope = doJailbreak super.threadscope; # https://github.com/mpickering/hs-speedscope/issues/16 hs-speedscope = doJailbreak super.hs-speedscope; @@ -2653,4 +2654,39 @@ self: super: { servant-cassava = assert super.servant-cassava.version == "0.10.1"; doJailbreak super.servant-cassava; + # Fix tests failure for ghc 9 (https://github.com/clinty/debian-haskell/pull/3) + debian = appendPatch (fetchpatch { + name = "debian-haskell.3.patch"; + url = "https://github.com/clinty/debian-haskell/pull/3/commits/47441c8e4a7a00a3c8825eec98bf7a823594f9be.patch"; + sha256 = "0wxpqazjnal9naibapg63nm7x6qz0lklcfw2m5mzjrh2q9x2cvnd"; + }) super.debian; + + # Raise version bounds for hspec + records-sop = appendPatch (fetchpatch { + url = "https://github.com/kosmikus/records-sop/pull/11/commits/d88831388ab3041190130fec3cdd679a4217b3c7.patch"; + sha256 = "sha256-O+v/OxvqnlWX3HaDvDIBZnJ+Og3xs/SJqI3gaouU3ZI="; + }) super.records-sop; + + # Fix build failures for ghc 9 (https://github.com/mokus0/polynomial/pull/20) + polynomial = appendPatch (fetchpatch { + name = "haskell-polynomial.20.patch"; + url = "https://github.com/mokus0/polynomial/pull/20.diff"; + sha256 = "1bwivimpi2hiil3zdnl5qkds1inyn239wgxbn3y8l2pwyppnnfl0"; + }) + (overrideCabal (drv: { + revision = null; + editedCabalFile = null; + doCheck = false; # Source dist doesn't include the checks + }) + super.polynomial); + + fast-tags = appendPatches [ + (fetchpatch { + name = "fast-tags-ghc-9.0-fix-test-nondeterminism.patch"; + url = "https://github.com/elaforge/fast-tags/commit/af861acc2dd239fedd8b169ddc5e3fa694e7af57.patch"; + sha256 = "0ml678q1n29daqnxsb5p94s5lf7a6dk4lqbbgmiayxrbyxnlbi4f"; + excludes = [ ".github/**" ]; + }) + ] super.fast-tags; + } // import ./configuration-tensorflow.nix {inherit pkgs haskellLib;} self super diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.8.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.8.x.nix index d7b049b205b..a6fad258cf8 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-8.8.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-8.8.x.nix @@ -118,7 +118,7 @@ self: super: { liquidhaskell = markBroken super.liquidhaskell; # This became a core library in ghc 8.10., so we don‘t have an "exception" attribute anymore. - exceptions = super.exceptions_0_10_4; + exceptions = super.exceptions_0_10_5; # ghc versions which don‘t match the ghc-lib-parser-ex version need the # additional dependency to compile successfully. diff --git a/pkgs/development/haskell-modules/configuration-ghc-9.2.x.nix b/pkgs/development/haskell-modules/configuration-ghc-9.2.x.nix index 93fe7ab26c7..f8180106499 100644 --- a/pkgs/development/haskell-modules/configuration-ghc-9.2.x.nix +++ b/pkgs/development/haskell-modules/configuration-ghc-9.2.x.nix @@ -115,7 +115,7 @@ self: super: { lifted-async = doJailbreak super.lifted-async; lukko = doJailbreak super.lukko; lzma-conduit = doJailbreak super.lzma-conduit; - ormolu = self.ormolu_0_4_0_0; + ormolu = self.ormolu_0_5_0_0; parallel = doJailbreak super.parallel; path = doJailbreak super.path; polyparse = overrideCabal (drv: { postPatch = "sed -i -e 's, <0.11, <0.12,' polyparse.cabal"; }) (doJailbreak super.polyparse); @@ -209,6 +209,7 @@ self: super: { fourmolu = super.fourmolu_0_6_0_0; # hls-fourmolu-plugin in this version has a to strict upper bound of fourmolu <= 0.5.0.0 hls-fourmolu-plugin = assert super.hls-fourmolu-plugin.version == "1.0.3.0"; doJailbreak super.hls-fourmolu-plugin; + hls-ormolu-plugin = assert super.hls-ormolu-plugin.version == "1.0.2.1"; doJailbreak super.hls-ormolu-plugin; implicit-hie-cradle = doJailbreak super.implicit-hie-cradle; # 1.3 introduced support for GHC 9.2.x, so when this assert fails, the jailbreak can be removed hashtables = assert super.hashtables.version == "1.2.4.2"; doJailbreak super.hashtables; diff --git a/pkgs/development/haskell-modules/configuration-ghcjs.nix b/pkgs/development/haskell-modules/configuration-ghcjs.nix index c6e0e6a2c05..bab115ce641 100644 --- a/pkgs/development/haskell-modules/configuration-ghcjs.nix +++ b/pkgs/development/haskell-modules/configuration-ghcjs.nix @@ -25,7 +25,7 @@ self: super: # GHCJS does not ship with the same core packages as GHC. # https://github.com/ghcjs/ghcjs/issues/676 stm = doJailbreak self.stm_2_5_0_2; - exceptions = dontCheck self.exceptions_0_10_4; + exceptions = dontCheck self.exceptions_0_10_5; ## OTHER PACKAGES diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml index 2fcf4bc890b..5d0b0dafaff 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml @@ -525,6 +525,7 @@ broken-packages: - cabal-bundle-clib - cabal-constraints - cabal-db + - cabal-debian - cabal-dependency-licenses - cabal-detailed-quickcheck - cabal-dev @@ -1031,7 +1032,6 @@ broken-packages: - dead-code-detection - Deadpan-DDP - dead-simple-json - - debian - debug-me - debug-tracy - decepticons @@ -1404,7 +1404,6 @@ broken-packages: - fast-nats - fastpbkdf2 - FastPush - - fast-tags - FastxPipe - fathead-util - fb @@ -1586,6 +1585,7 @@ broken-packages: - fused-effects-exceptions - fused-effects-mwc-random - fused-effects-resumable + - fused-effects-squeal - fusion - futhask - futun @@ -2851,6 +2851,7 @@ broken-packages: - lagrangian - lambda2js - lambdaBase + - lambdabot-telegram-plugins - lambdabot-utils - lambdabot-xmpp - lambda-bridge @@ -3082,6 +3083,7 @@ broken-packages: - LTS - lua-bc - luautils + - lucid2 - lucid-htmx - lucid-hyperscript - luis-client @@ -3935,7 +3937,6 @@ broken-packages: - poly-control - polydata-core - polynom - - polynomial - polynomial-algebra - polysemy-check - polysemy-keyed-state @@ -3978,6 +3979,7 @@ broken-packages: - postgresql-simple-sop - postgresql-transactional - postgresql-tx-simple + - postgresql-tx-squeal - postgresql-typed-lifted - postgres-tmp - postgrest-ws @@ -4216,7 +4218,6 @@ broken-packages: - record - record-encode - records - - records-sop - record-wrangler - recursion-schemes-ext - recursion-schemes-ix @@ -4773,6 +4774,7 @@ broken-packages: - spir-v - splay - splaytree + - splines - split-morphism - splitter - Spock-api-ghcjs @@ -5121,7 +5123,6 @@ broken-packages: - thorn - th-pprint - threadmanager - - threadscope - thread-supervisor - threepenny-editors - threepenny-gui-contextmenu diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml index 66bdbe8f78f..f27f89e873f 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix/main.yaml @@ -118,7 +118,6 @@ extra-packages: - ghc-lib-parser == 8.10.7.* # 2022-02-17: preserve for GHC 8.10.7 - ghc-lib-parser-ex == 8.10.* # 2022-02-17: preserve for GHC 8.10.7 - doctest == 0.18.* # 2021-11-19: closest to stackage version for GHC 9.* - - brick == 0.64.* # 2021-12-03: matterhorn depends on brick < 0.65 - path == 0.9.0 # 2021-12-03: path version building with stackage genvalidity and GHC 9.0.2 - ormolu == 0.2.* # 2022-02-21: For ghc 8.8 and 8.10 - ShellCheck == 0.7.2 # 2022-02-20: haskell-ci 0.14 needs this @@ -189,6 +188,7 @@ package-maintainers: - hakyll - hakyll-contrib-hyphenation - webify + - squeal-postgresql Gabriel439: - annah - bench diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml index e62cdd83090..051df85f4b2 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix/transitive-broken.yaml @@ -873,7 +873,6 @@ dont-distribute-packages: - cabal-bounds - cabal-cache - cabal-cargs - - cabal-debian - cabal-query - cabal-test - cabal2arch @@ -1361,7 +1360,6 @@ dont-distribute-packages: - enumerator-tf - enumfun - ephemeral - - erf-native - eros-client - eros-http - error-message @@ -1546,7 +1544,6 @@ dont-distribute-packages: - funion - funnyprint - funsat - - fused-effects-squeal - fwgl-glfw - fwgl-javascript - fxpak @@ -2485,6 +2482,7 @@ dont-distribute-packages: - keera-hails-reactive-yampa - keera-hails-reactivelenses - keera-posture + - keid-frp-banana - keid-geometry - keid-render-basic - keid-resource-gltf @@ -3141,7 +3139,6 @@ dont-distribute-packages: - postgresql-simple-queue - postgresql-simple-typed - postgresql-tx-query - - postgresql-tx-squeal - postgresql-tx-squeal-compat-simple - postgrest - postmark @@ -3691,7 +3688,6 @@ dont-distribute-packages: - sphinx-cli - spice - spike - - splines - sprinkles - sql-simple-mysql - sql-simple-pool @@ -3699,9 +3695,6 @@ dont-distribute-packages: - sql-simple-sqlite - sqlite-simple-typed - sqsd-local - - squeal-postgresql - - squeal-postgresql-ltree - - squeal-postgresql-uuid-ossp - sr-extra - sscgi - sshd-lint @@ -4063,7 +4056,6 @@ dont-distribute-packages: - viewprof - vigilance - vimeta - - vinyl-generics - vinyl-operational - vision - visual-graphrewrite diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix index 782b1225a68..75c2417e0f9 100644 --- a/pkgs/development/haskell-modules/hackage-packages.nix +++ b/pkgs/development/haskell-modules/hackage-packages.nix @@ -770,8 +770,8 @@ self: { }: mkDerivation { pname = "AesonBson"; - version = "0.4.0"; - sha256 = "08ffz1fr8x5z3ipvk99wc5n363ghxrq1z0cv1yh57wx18ialk1cx"; + version = "0.4.1"; + sha256 = "0nyl0a3814163dxpmiadmmjdhd9cycmihwmsz7f0316hbm30lg7z"; enableSeparateDataOutput = true; libraryHaskellDepends = [ aeson attoparsec base bson scientific text unordered-containers @@ -1131,15 +1131,16 @@ self: { }) {}; "AspectAG" = callPackage - ({ mkDerivation, base, containers, mtl, poly-rec, requirements - , tagged, template-haskell + ({ mkDerivation, base, containers, ghc-prim, loch-th, mtl, poly-rec + , requirements, template-haskell }: mkDerivation { pname = "AspectAG"; - version = "0.6.0.0"; - sha256 = "09lm1hs9l3h6ndv385adhh0kf9id10fjf0n1bczgzqgxmiykx2kn"; + version = "0.7.0.0"; + sha256 = "1w5zfx5vgvkys84vdrdd3rv39ly25wbn9izlir19irniqsbf6z6v"; libraryHaskellDepends = [ - base containers mtl poly-rec requirements tagged template-haskell + base containers ghc-prim loch-th mtl poly-rec requirements + template-haskell ]; description = "Strongly typed Attribute Grammars implemented using type-level programming"; license = lib.licenses.gpl3Only; @@ -3031,8 +3032,8 @@ self: { pname = "Chart"; version = "1.9.3"; sha256 = "0p69kq5kh40gd4y8wqabypmw67pqh42vaaw64zv9sf8j075g85ry"; - revision = "2"; - editedCabalFile = "04mmsm54mdqcrypvgawhhbwjscmky3j7g5841bc71c0q6d33h2k4"; + revision = "3"; + editedCabalFile = "0lgfq5cmhx0q9wqnplw1xr5ql88jjffzc0i72v1lfiqsp9w3lppf"; libraryHaskellDepends = [ array base colour data-default-class lens mtl old-locale operational time vector @@ -3049,8 +3050,8 @@ self: { pname = "Chart-cairo"; version = "1.9.3"; sha256 = "0clm68alzsakkn5m4h49dgx33crajacsykb4hry2fh9zxp9j743f"; - revision = "2"; - editedCabalFile = "0z93znn3dpgj80iiz3a67m90x0j9ljr0jd1ws9jkzj7rk88014gp"; + revision = "3"; + editedCabalFile = "1d48i6y0lzj066swdb3x56jipxwlx1szwn7j43d50hxmcfjrsgc9"; libraryHaskellDepends = [ array base cairo Chart colour data-default-class lens mtl old-locale operational time @@ -3069,8 +3070,8 @@ self: { pname = "Chart-diagrams"; version = "1.9.3"; sha256 = "075yzq50jpakgq6lb3anr660jydm68ry0di33icdacbdymq8avwn"; - revision = "3"; - editedCabalFile = "0gbmgvab7ggws65813xv9913g0jab8k6bcpdnwkri9s4y2pqsrk3"; + revision = "4"; + editedCabalFile = "0qsgg78plwr7wabc680x8qshv137vhplqqvs4730xb62z45r6kjl"; enableSeparateDataOutput = true; libraryHaskellDepends = [ base blaze-markup bytestring Chart colour containers @@ -3162,8 +3163,8 @@ self: { pname = "Chart-tests"; version = "1.9.3"; sha256 = "1xhjd400xf235m345mhn98hjrvvv5qdr90paq4kixh2g0aswnhrd"; - revision = "1"; - editedCabalFile = "1kpqix1wp8qy3ca9fbh3kpbqp48nchvqqjp4n8h4x2bhl80lgvvh"; + revision = "2"; + editedCabalFile = "1i8dxpy504mnf7phg40i5v1p31hbj5xdx0ldz5a5y6irjwy9mawf"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -11065,6 +11066,28 @@ self: { license = lib.licenses.gpl2Only; }) {}; + "HsYAML_0_2_1_1" = callPackage + ({ mkDerivation, base, bytestring, containers, deepseq, mtl, parsec + , QuickCheck, tasty, tasty-quickcheck, text, transformers + }: + mkDerivation { + pname = "HsYAML"; + version = "0.2.1.1"; + sha256 = "0a7nbvpl4p8kwbbjfn1dj6s3fif5k8zhbckdvyz1k74pj3yb8ns6"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base bytestring containers deepseq mtl parsec text transformers + ]; + testHaskellDepends = [ + base bytestring containers mtl QuickCheck tasty tasty-quickcheck + text + ]; + description = "Pure Haskell YAML 1.2 processor"; + license = lib.licenses.gpl2Only; + hydraPlatforms = lib.platforms.none; + }) {}; + "HsYAML-aeson" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, HsYAML, mtl , scientific, text, unordered-containers, vector @@ -11073,8 +11096,8 @@ self: { pname = "HsYAML-aeson"; version = "0.2.0.1"; sha256 = "139hqd07hkr8ykvrgmcshh9f3vp9dnrj6ks5nl8hgrpi990jsy5r"; - revision = "1"; - editedCabalFile = "0d9gih7mkm0k47351539x9vdjvjjysk1rvba88r214qsjxnh4kym"; + revision = "2"; + editedCabalFile = "15j9w4ay9j2yzb14fywljrv8vsv91lhlxf2z3xvmmgmgj6wpf2n4"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -14419,6 +14442,8 @@ self: { pname = "Naperian"; version = "0.1.1.0"; sha256 = "1i9hc1pdp9mg9x1xd4wrv06cbhjxw0yhyk2xhsm8jz6rgksa22j7"; + revision = "1"; + editedCabalFile = "0njjyn54cda1j2rmxhmz9hnbg5rwd5f8qcdgfk2z9bq1aiv3h61q"; libraryHaskellDepends = [ base containers ghc-prim vector ]; description = "Naperian Functors for APL-like programming"; license = "unknown"; @@ -24435,6 +24460,28 @@ self: { license = lib.licenses.bsd3; }) {}; + "adjunctions_4_4_1" = callPackage + ({ mkDerivation, array, base, comonad, containers, contravariant + , distributive, free, generic-deriving, hspec, hspec-discover, mtl + , profunctors, semigroupoids, semigroups, tagged, transformers + , transformers-compat, void + }: + mkDerivation { + pname = "adjunctions"; + version = "4.4.1"; + sha256 = "0hqm86v5in7xp31wv3wvr1h7gsim96fpl0si0xrpv8060qalzwww"; + libraryHaskellDepends = [ + array base comonad containers contravariant distributive free mtl + profunctors semigroupoids semigroups tagged transformers + transformers-compat void + ]; + testHaskellDepends = [ base distributive generic-deriving hspec ]; + testToolDepends = [ hspec-discover ]; + description = "Adjunctions and representable functors"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "adler32" = callPackage ({ mkDerivation, base, bytestring, hspec, zlib }: mkDerivation { @@ -24725,6 +24772,8 @@ self: { pname = "aeson-better-errors"; version = "0.9.1.1"; sha256 = "05yibq9kqbjb8rh84n12sbax05amvd8jccpja0hyadz58pjy4jnk"; + revision = "1"; + editedCabalFile = "0wzvrmhn5q2x1mcv43cyxhlck815ldkhx7c7gz5ijjyva1iicgn2"; libraryHaskellDepends = [ aeson base bytestring dlist mtl scientific text transformers transformers-compat unordered-containers vector void @@ -25122,18 +25171,12 @@ self: { }) {}; "aeson-iproute" = callPackage - ({ mkDerivation, aeson, base, doctest, iproute, text - , unordered-containers - }: + ({ mkDerivation, aeson, base, doctest, iproute, text }: mkDerivation { pname = "aeson-iproute"; - version = "0.2.1"; - sha256 = "1130mr5fqwi4d74xg6nkvpqycc0vvd6rsiahm1pdhbrx3wvra8p2"; - revision = "1"; - editedCabalFile = "1q9yr42mvvcqy20ww1xcsy2q6jji0mrqng2clq8yd5diyy7kqx1a"; - libraryHaskellDepends = [ - aeson base iproute text unordered-containers - ]; + version = "0.3.0"; + sha256 = "027mmmjlfld6mncn0k8v0i2lg4xkgymaakl5nqs7jw7apgy83x2z"; + libraryHaskellDepends = [ aeson base iproute text ]; testHaskellDepends = [ base doctest ]; description = "Aeson instances for iproute types"; license = lib.licenses.bsd3; @@ -33293,8 +33336,8 @@ self: { }: mkDerivation { pname = "arduino-copilot"; - version = "1.7.0"; - sha256 = "073l9fmg1i83whdfbplpshz2695ls7bb4kf4c40446q0cpccpnrc"; + version = "1.7.1"; + sha256 = "1w42y0avx032i7s208p1rkc24c7hy7lbjia5qjgixzv8qcc0693b"; libraryHaskellDepends = [ base containers copilot copilot-c99 copilot-language directory filepath mtl optparse-applicative sketch-frp-copilot temporary @@ -40891,6 +40934,21 @@ self: { license = lib.licenses.bsd3; }) {}; + "benchpress_0_2_2_20" = callPackage + ({ mkDerivation, base, bytestring, mtl, time }: + mkDerivation { + pname = "benchpress"; + version = "0.2.2.20"; + sha256 = "0yh44hdk7gh6ygdlys2mrij2gphdv5da8hmc7rnyf6cr5509ynn8"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base mtl time ]; + executableHaskellDepends = [ base bytestring time ]; + description = "Micro-benchmarking with detailed statistics"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "bencode" = callPackage ({ mkDerivation, base, binary, bytestring, containers, hspec , parsec, QuickCheck, transformers, transformers-compat @@ -41422,6 +41480,29 @@ self: { license = lib.licenses.bsd3; }) {}; + "bifunctors_5_5_12" = callPackage + ({ mkDerivation, base, base-orphans, comonad, containers, hspec + , hspec-discover, QuickCheck, tagged, template-haskell + , th-abstraction, transformers, transformers-compat + }: + mkDerivation { + pname = "bifunctors"; + version = "5.5.12"; + sha256 = "0pbidsv1w3bvzs8w6sv8g1iqf0l9r1y0b1fmvd67cwlp01r7f1n6"; + libraryHaskellDepends = [ + base base-orphans comonad containers tagged template-haskell + th-abstraction transformers + ]; + testHaskellDepends = [ + base hspec QuickCheck template-haskell transformers + transformers-compat + ]; + testToolDepends = [ hspec-discover ]; + description = "Bifunctors"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "bighugethesaurus" = callPackage ({ mkDerivation, base, HTTP, split }: mkDerivation { @@ -44196,6 +44277,8 @@ self: { pname = "bits"; version = "0.6"; sha256 = "18s2aa99cwcshcws2zl2ll7xgqn9dpznpkv1nplamc9h4vmqqs93"; + revision = "1"; + editedCabalFile = "1f118vwwskai74l6wn5sfy002k241qv1rhpsahphfr58llzgvv50"; libraryHaskellDepends = [ base bytes mtl transformers ]; description = "Various bit twiddling and bitwise serialization primitives"; license = lib.licenses.bsd3; @@ -45082,6 +45165,18 @@ self: { broken = true; }) {}; + "blaze-htmx" = callPackage + ({ mkDerivation, base, blaze-html, blaze-markup }: + mkDerivation { + pname = "blaze-htmx"; + version = "0.1.0.0"; + sha256 = "18bl1bnf5z3p9pa12hjd2j53hi1qigya8bbpsj9jczgn4cbvx5q6"; + libraryHaskellDepends = [ base blaze-html blaze-markup ]; + testHaskellDepends = [ base blaze-html ]; + description = "Blaze integration of the htmx library"; + license = lib.licenses.bsd3; + }) {}; + "blaze-json" = callPackage ({ mkDerivation, aeson, base, bytestring, bytestring-builder , containers, data-default-class, doctest, QuickCheck, scientific @@ -45835,6 +45930,8 @@ self: { pname = "bm"; version = "0.1.0.2"; sha256 = "1rpwlbhn5fkndw19ryksm9x2fcg7z7xscigi4zfs9v4w16skn7zj"; + revision = "1"; + editedCabalFile = "0jkl79smdm144qz074zshzl22cjhfr8mnddgwlj1hfn8anksv3yd"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -46758,6 +46855,29 @@ self: { license = lib.licenses.bsd3; }) {}; + "bound_2_0_5" = callPackage + ({ mkDerivation, base, bifunctors, binary, bytes, cereal, comonad + , deepseq, deriving-compat, hashable, mmorph, profunctors + , template-haskell, th-abstraction, transformers + , transformers-compat, vector, void + }: + mkDerivation { + pname = "bound"; + version = "2.0.5"; + sha256 = "1cnw0q97bys7jcpjds2fb6zkq9pyqxcb8v0b5dvkckqmlp8agn4v"; + libraryHaskellDepends = [ + base bifunctors binary bytes cereal comonad deepseq hashable mmorph + profunctors template-haskell th-abstraction transformers + transformers-compat + ]; + testHaskellDepends = [ + base deriving-compat transformers transformers-compat vector void + ]; + description = "Making de Bruijn Succ Less"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "bound-extras" = callPackage ({ mkDerivation, adjunctions, base, bound, containers, deepseq , filepath, hashable, pretty, tasty, tasty-golden, text-short @@ -47153,33 +47273,6 @@ self: { broken = true; }) {}; - "brick_0_64_2" = callPackage - ({ mkDerivation, base, bytestring, config-ini, containers - , contravariant, data-clist, deepseq, directory, dlist, exceptions - , filepath, microlens, microlens-mtl, microlens-th, QuickCheck, stm - , template-haskell, text, text-zipper, transformers, unix, vector - , vty, word-wrap - }: - mkDerivation { - pname = "brick"; - version = "0.64.2"; - sha256 = "058kpghx5s559z5l9hav44s8vb5lizn8j7v7l4lmvpqx3a6cisn7"; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - base bytestring config-ini containers contravariant data-clist - deepseq directory dlist exceptions filepath microlens microlens-mtl - microlens-th stm template-haskell text text-zipper transformers - unix vector vty word-wrap - ]; - testHaskellDepends = [ - base containers microlens QuickCheck vector - ]; - description = "A declarative terminal user interface library"; - license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - }) {}; - "brick" = callPackage ({ mkDerivation, base, bytestring, config-ini, containers , contravariant, data-clist, deepseq, directory, dlist, exceptions @@ -47981,6 +48074,31 @@ self: { license = lib.licenses.bsd3; }) {}; + "buffer-builder_0_2_4_8" = callPackage + ({ mkDerivation, aeson, attoparsec, base, bytestring, criterion + , deepseq, HTF, http-types, json-builder, mtl, quickcheck-instances + , text, unordered-containers, vector + }: + mkDerivation { + pname = "buffer-builder"; + version = "0.2.4.8"; + sha256 = "14l70h4j1dmhm96fsxg1mhiw00h9jqw0wy02v31lsz0jwpdr2513"; + libraryHaskellDepends = [ + base bytestring mtl text unordered-containers vector + ]; + testHaskellDepends = [ + aeson attoparsec base bytestring criterion deepseq HTF + quickcheck-instances text vector + ]; + benchmarkHaskellDepends = [ + aeson base bytestring criterion deepseq http-types json-builder + text vector + ]; + description = "Library for efficiently building up buffers, one piece at a time"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "buffer-builder-aeson" = callPackage ({ mkDerivation, aeson, attoparsec, base, buffer-builder , bytestring, criterion, deepseq, hashable, HUnit, integer-gmp @@ -48872,6 +48990,22 @@ self: { license = lib.licenses.gpl3Only; }) {}; + "byte-count-reader_0_10_1_9" = callPackage + ({ mkDerivation, base, extra, hspec, parsec, parsec-numbers, text + }: + mkDerivation { + pname = "byte-count-reader"; + version = "0.10.1.9"; + sha256 = "0k9ayxy7snxp0wc9wqqb8yka4zyc6s3bkm98znzbpznhqld81x8v"; + libraryHaskellDepends = [ base extra parsec parsec-numbers text ]; + testHaskellDepends = [ + base extra hspec parsec parsec-numbers text + ]; + description = "Read strings describing a number of bytes like 2Kb and 0.5 MiB"; + license = lib.licenses.gpl3Only; + hydraPlatforms = lib.platforms.none; + }) {}; + "byte-order" = callPackage ({ mkDerivation, base, primitive, primitive-unaligned, wide-word }: mkDerivation { @@ -49057,6 +49191,25 @@ self: { license = lib.licenses.bsd3; }) {}; + "bytes_0_17_2" = callPackage + ({ mkDerivation, base, binary, binary-orphans, bytestring, cereal + , containers, hashable, mtl, scientific, text, time, transformers + , transformers-compat, unordered-containers, void + }: + mkDerivation { + pname = "bytes"; + version = "0.17.2"; + sha256 = "06kqqk19qjhrwdqi6pyd1lwqfnj2sw3b3s49lc5vr2fmv8gg8mdw"; + libraryHaskellDepends = [ + base binary binary-orphans bytestring cereal containers hashable + mtl scientific text time transformers transformers-compat + unordered-containers void + ]; + description = "Sharing code for serialization between binary and cereal"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "byteset" = callPackage ({ mkDerivation, base, binary }: mkDerivation { @@ -50315,6 +50468,7 @@ self: { description = "Create a Debianization for a Cabal package"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "cabal-dependency-licenses" = callPackage @@ -52492,16 +52646,16 @@ self: { "cantor-pairing" = callPackage ({ mkDerivation, base, containers, hspec, hspec-discover - , integer-gmp, integer-logarithms, integer-roots, mtl + , integer-gmp, integer-logarithms, integer-roots }: mkDerivation { pname = "cantor-pairing"; - version = "0.2.0.1"; - sha256 = "12wfm27gwhar7djd459yc86bv29818xdyc8glkhgn4q1kx7nda90"; + version = "0.2.0.2"; + sha256 = "1h95xbc1lhwd40qk64qw2cmr7prwygli1q2wy5hscny7jyah95c2"; libraryHaskellDepends = [ base containers integer-gmp integer-logarithms integer-roots ]; - testHaskellDepends = [ base containers hspec mtl ]; + testHaskellDepends = [ base containers hspec ]; testToolDepends = [ hspec-discover ]; description = "Convert data to and from a natural number representation"; license = lib.licenses.mit; @@ -58239,22 +58393,20 @@ self: { }) {}; "cleveland" = callPackage - ({ mkDerivation, aeson, aeson-pretty, aeson-qq, base-noprelude - , bimap, bytestring, constraints, containers, criterion, cryptonite - , data-default, directory, either, exceptions, file-embed, filepath - , first-class-families, fmt, gauge, hedgehog, hex-text, hspec - , hspec-expectations, HUnit, lens, lorentz, megaparsec, MonadRandom + ({ mkDerivation, aeson, base-noprelude, bytestring, constraints + , containers, criterion, cryptonite, data-default, directory + , either, exceptions, file-embed, filepath, fmt, hedgehog, hex-text + , hspec, hspec-expectations, HUnit, lens, lorentz, MonadRandom , morley, morley-client, morley-prelude, mtl, named, o-clock , optparse-applicative, safe-exceptions, servant-client - , servant-client-core, silently, singletons, spoon, statistics, syb - , tagged, tasty, tasty-ant-xml, tasty-discover, tasty-hedgehog - , tasty-hspec, tasty-hunit-compat, template-haskell, temporary - , text, time, type-spec, unordered-containers, vinyl, with-utf8 + , servant-client-core, singletons, statistics, tagged, tasty + , tasty-ant-xml, tasty-discover, tasty-hedgehog, tasty-hunit-compat + , template-haskell, temporary, text, time, with-utf8 }: mkDerivation { pname = "cleveland"; - version = "0.1.1"; - sha256 = "0hwdcld5blhc1af2xc0d4qjj7vz7gh7989ckkbzfagkaz45d7rr7"; + version = "0.1.2"; + sha256 = "0fci9g9fw0lg6xzb6jxqql6nda0by6p89mxdmwncs6dsh7c2lsaw"; libraryHaskellDepends = [ aeson base-noprelude bytestring constraints containers criterion cryptonite data-default directory either exceptions file-embed fmt @@ -58265,20 +58417,12 @@ self: { tasty-hunit-compat template-haskell text time with-utf8 ]; testHaskellDepends = [ - aeson aeson-pretty aeson-qq base-noprelude bimap bytestring - constraints containers cryptonite data-default directory either - filepath first-class-families fmt hedgehog hex-text hspec - hspec-expectations HUnit lens lorentz megaparsec morley - morley-client morley-prelude mtl named o-clock servant-client - silently singletons spoon syb tasty tasty-hedgehog tasty-hspec - tasty-hunit-compat template-haskell temporary text time type-spec - unordered-containers vinyl with-utf8 + base-noprelude either filepath fmt hedgehog hspec-expectations lens + lorentz morley morley-client morley-prelude named o-clock + servant-client tasty tasty-hedgehog tasty-hunit-compat temporary + text time ]; testToolDepends = [ tasty-discover ]; - benchmarkHaskellDepends = [ - base-noprelude data-default gauge megaparsec morley morley-prelude - with-utf8 - ]; description = "Testing framework for Morley"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; @@ -63724,6 +63868,8 @@ self: { pname = "conduit-extra"; version = "1.3.5"; sha256 = "1n8js1y1rdswvp0bkjmmz19fag19bdxgwsrqz93yc09w43p8sr4a"; + revision = "1"; + editedCabalFile = "0pkixzcwqfisn5dk44z67k5bwc60fr6d3fwjrlzpx6jdqsvbbbmg"; libraryHaskellDepends = [ async attoparsec base bytestring conduit directory filepath network primitive process resourcet stm streaming-commons text transformers @@ -63741,6 +63887,36 @@ self: { license = lib.licenses.mit; }) {}; + "conduit-extra_1_3_6" = callPackage + ({ mkDerivation, async, attoparsec, base, bytestring, conduit + , directory, exceptions, filepath, gauge, hspec, hspec-discover + , network, primitive, process, QuickCheck, resourcet, stm + , streaming-commons, text, transformers, transformers-base + , typed-process, unliftio-core + }: + mkDerivation { + pname = "conduit-extra"; + version = "1.3.6"; + sha256 = "0lzip3af77wxf3a3vilfymqhd26gkvabx2fkj22w74nq960c6l49"; + libraryHaskellDepends = [ + async attoparsec base bytestring conduit directory filepath network + primitive process resourcet stm streaming-commons text transformers + typed-process unliftio-core + ]; + testHaskellDepends = [ + async attoparsec base bytestring conduit directory exceptions + filepath hspec process QuickCheck resourcet stm streaming-commons + text transformers transformers-base + ]; + testToolDepends = [ hspec-discover ]; + benchmarkHaskellDepends = [ + base bytestring conduit gauge transformers + ]; + description = "Batteries included conduit: adapters for common libraries"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "conduit-find" = callPackage ({ mkDerivation, attoparsec, base, conduit, conduit-combinators , conduit-extra, directory, doctest, either, exceptions, filepath @@ -63835,8 +64011,30 @@ self: { pname = "conduit-parse"; version = "0.2.1.0"; sha256 = "1qfs61qhbr5gc0ch0mmqcqdm4wvs5pkx2z6rki588fhy1kfdp1dm"; + revision = "2"; + editedCabalFile = "0134k9wi1ladmzd1rmb1gad6ig82pqsyb9d30z301anvb99473kz"; + libraryHaskellDepends = [ + base conduit dlist mtl parsers safe safe-exceptions text + transformers + ]; + testHaskellDepends = [ + base conduit mtl parsers resourcet safe-exceptions tasty + tasty-hunit + ]; + description = "Parsing framework based on conduit"; + license = lib.licenses.publicDomain; + }) {}; + + "conduit-parse_0_2_1_1" = callPackage + ({ mkDerivation, base, conduit, dlist, mtl, parsers, resourcet + , safe, safe-exceptions, tasty, tasty-hunit, text, transformers + }: + mkDerivation { + pname = "conduit-parse"; + version = "0.2.1.1"; + sha256 = "1xdc04m88lk9183ky020670hj2ilfff3q0zxnphva5p0ij32iyq7"; revision = "1"; - editedCabalFile = "1bgxjn9lbx67584xpwl2k9jrwvlgyqf4vkv0s7vs1nnc1h6qk7qw"; + editedCabalFile = "102y5wad007bz8iqv1nrz38gb24q15k9snl7l7zq9k7pisdxnans"; libraryHaskellDepends = [ base conduit dlist mtl parsers safe safe-exceptions text transformers @@ -63847,6 +64045,7 @@ self: { ]; description = "Parsing framework based on conduit"; license = lib.licenses.publicDomain; + hydraPlatforms = lib.platforms.none; }) {}; "conduit-resumablesink" = callPackage @@ -66315,8 +66514,8 @@ self: { }: mkDerivation { pname = "copilot"; - version = "3.8"; - sha256 = "0lqr2ns6jg7m36pynl6i442d8x4kdlwlxqf59a0gspn8zgidwaii"; + version = "3.9"; + sha256 = "0kryqpk4sn5gbpjpvzcdhd5yp5045cfr2c112df5vagd7gp4a4gd"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -66335,8 +66534,8 @@ self: { }: mkDerivation { pname = "copilot-c99"; - version = "3.8"; - sha256 = "0bpak9kd23j8bmc8x7ksb84gggmxplax4wj00c39mrvh5cb5wlwx"; + version = "3.9"; + sha256 = "1m915j72b6axbwnls4kcjcdpixxlrjxw4zpvdzq34jym5h2kpd78"; libraryHaskellDepends = [ base containers copilot-core directory filepath language-c99 language-c99-simple language-c99-util mtl pretty @@ -66369,8 +66568,8 @@ self: { }: mkDerivation { pname = "copilot-core"; - version = "3.8"; - sha256 = "0vv3p9a0c3pa856yx8zmr4d5ag8mym9gbpz5bgi17a7cgfc682cz"; + version = "3.9"; + sha256 = "0haqyci12b44dn1hpfqp9hfyw949gl61yzxic8kznb0hl1h1sl5a"; libraryHaskellDepends = [ base dlist mtl pretty ]; testHaskellDepends = [ base HUnit pretty QuickCheck test-framework test-framework-hunit @@ -66407,8 +66606,8 @@ self: { }: mkDerivation { pname = "copilot-language"; - version = "3.8"; - sha256 = "1wnv7xkgalxd7p7bm2zrsbg2r2wip9an8m5m3fc63wxvk9wcabj6"; + version = "3.9"; + sha256 = "1041mm4c8zf7wlrcnfp97lsnr8qsmclr7y3qcawx9pmarwk8arg8"; libraryHaskellDepends = [ array base containers copilot-core copilot-theorem data-reify mtl ]; @@ -66427,8 +66626,8 @@ self: { }: mkDerivation { pname = "copilot-libraries"; - version = "3.8"; - sha256 = "1sx8bl10j7qwqi91dbl9dahy9l2n17qfbyni73az2fx9rq3q1jkz"; + version = "3.9"; + sha256 = "12h121zlq4xbkh947lkxdsjykf061rlmxkyhzyc2s2520fhkapx3"; libraryHaskellDepends = [ array base containers copilot-language data-reify mtl parsec ]; @@ -66461,8 +66660,8 @@ self: { }: mkDerivation { pname = "copilot-theorem"; - version = "3.8"; - sha256 = "18287hs36lhf1g6l740vkynccy1d87lrr9rcjpgzfn03s9y3d58n"; + version = "3.9"; + sha256 = "1gnr6rd88gxs5wxkh6j28hqm81bj8b585n6ywm6s5p2wxgx0wzbn"; libraryHaskellDepends = [ ansi-terminal base bimap bv-sized containers copilot-core data-default directory filepath libBF mtl panic parameterized-utils @@ -66625,6 +66824,28 @@ self: { license = lib.licenses.mit; }) {}; + "core-program_0_4_6_4" = callPackage + ({ mkDerivation, async, base, bytestring, chronologique, core-data + , core-text, directory, exceptions, filepath, fsnotify, hashable + , hourglass, mtl, prettyprinter, safe-exceptions, stm + , template-haskell, terminal-size, text, text-short, transformers + , typed-process, unix + }: + mkDerivation { + pname = "core-program"; + version = "0.4.6.4"; + sha256 = "0bkjb9lpcnkj1lkpw309q3chd9aw5s5gvdprr335121xpjbgl33m"; + libraryHaskellDepends = [ + async base bytestring chronologique core-data core-text directory + exceptions filepath fsnotify hashable hourglass mtl prettyprinter + safe-exceptions stm template-haskell terminal-size text text-short + transformers typed-process unix + ]; + description = "Opinionated Haskell Interoperability"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "core-telemetry" = callPackage ({ mkDerivation, async, base, bytestring, chronologique, core-data , core-program, core-text, exceptions, http-streams, io-streams @@ -66683,8 +66904,8 @@ self: { }: mkDerivation { pname = "core-webserver-servant"; - version = "0.1.0.0"; - sha256 = "1d888qpm9g867czdhyv65302badpwg275xran5n3mapfjvk1zbqd"; + version = "0.1.1.0"; + sha256 = "1a5wzw0v5wfkqr856r04pj2l47d0v6n7va7qcx66skkz8q4q3lkl"; libraryHaskellDepends = [ base core-program core-telemetry core-webserver-warp mtl safe-exceptions servant servant-server vault wai @@ -66701,8 +66922,8 @@ self: { }: mkDerivation { pname = "core-webserver-warp"; - version = "0.1.1.3"; - sha256 = "1yjy5y0lvwkjyribhqavcda57s30jc7xjacng2g3p256kfp7mc2r"; + version = "0.1.1.4"; + sha256 = "03jsb8x41v62l065lkdy2zr6cwk80l84ai6lnbwxf1472f5p7619"; libraryHaskellDepends = [ async base bytestring core-data core-program core-telemetry core-text http-types http2 mtl safe-exceptions vault wai warp @@ -74551,8 +74772,6 @@ self: { ]; description = "Modules for working with the Debian package system"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "debian-binary" = callPackage @@ -76246,6 +76465,30 @@ self: { license = lib.licenses.bsd3; }) {}; + "deriving-compat_0_6_1" = callPackage + ({ mkDerivation, base, base-compat, base-orphans, containers + , ghc-boot-th, ghc-prim, hspec, hspec-discover, QuickCheck, tagged + , template-haskell, th-abstraction, transformers + , transformers-compat, void + }: + mkDerivation { + pname = "deriving-compat"; + version = "0.6.1"; + sha256 = "09lxms6220saycra4kpxihwa7zh253zmv1zpa41dbnhgffxs3zbb"; + libraryHaskellDepends = [ + base containers ghc-boot-th ghc-prim template-haskell + th-abstraction transformers transformers-compat + ]; + testHaskellDepends = [ + base base-compat base-orphans hspec QuickCheck tagged + template-haskell transformers transformers-compat void + ]; + testToolDepends = [ hspec-discover ]; + description = "Backports of GHC deriving extensions"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "deriving-show-simple" = callPackage ({ mkDerivation, base, HUnit }: mkDerivation { @@ -77678,8 +77921,8 @@ self: { }: mkDerivation { pname = "diagnose"; - version = "1.9.0"; - sha256 = "0w3mzk50pzf5rr2k8lfkmmlsr8kmvgx1jcszla4khx0an5bsafnf"; + version = "2.0.0"; + sha256 = "1rb2fm0bx1rmb63xc56v19adi9f0iy72j0h8rvrvw0lvcwp398xk"; libraryHaskellDepends = [ base data-default hashable prettyprinter prettyprinter-ansi-terminal unordered-containers wcwidth @@ -79677,19 +79920,19 @@ self: { ({ mkDerivation, aeson, async, base, base64-bytestring, bytestring , containers, data-default, emoji, http-client, iso8601-time , JuicyPixels, MonadRandom, mtl, req, safe-exceptions, scientific - , text, time, unliftio, unordered-containers, websockets, wuss + , text, time, unliftio, websockets, wuss }: mkDerivation { pname = "discord-haskell"; - version = "1.12.5"; - sha256 = "1pciyjmgqnv4ra12fshmjb65phgs1l6jsn0ffvargv3gm92g079y"; + version = "1.13.0"; + sha256 = "1bj75kj9pzm0f6dyh8g60s9nvkbsfc80sqrsd7q6czwhi765nqy0"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson async base base64-bytestring bytestring containers data-default emoji http-client iso8601-time JuicyPixels MonadRandom - mtl req safe-exceptions scientific text time unliftio - unordered-containers websockets wuss + mtl req safe-exceptions scientific text time unliftio websockets + wuss ]; executableHaskellDepends = [ base text unliftio ]; description = "Write bots for Discord in Haskell"; @@ -86016,6 +86259,25 @@ self: { license = lib.licenses.bsd3; }) {}; + "either_5_0_2" = callPackage + ({ mkDerivation, base, bifunctors, mtl, profunctors, QuickCheck + , semigroupoids, test-framework, test-framework-quickcheck2 + }: + mkDerivation { + pname = "either"; + version = "5.0.2"; + sha256 = "1gl748ia68bldbqb2fl7vjv44g0y8ivn659fjmy1qyypgyb5p95z"; + libraryHaskellDepends = [ + base bifunctors mtl profunctors semigroupoids + ]; + testHaskellDepends = [ + base QuickCheck test-framework test-framework-quickcheck2 + ]; + description = "Combinators for working with sums"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "either-both" = callPackage ({ mkDerivation, base, smallcheck, tasty, tasty-smallcheck }: mkDerivation { @@ -88650,7 +88912,6 @@ self: { libraryHaskellDepends = [ base polynomial ]; description = "Native Haskell implementation of the interface from the erf package"; license = "GPL"; - hydraPlatforms = lib.platforms.none; }) {}; "erlang" = callPackage @@ -90852,17 +91113,17 @@ self: { broken = true; }) {}; - "exceptions_0_10_4" = callPackage + "exceptions_0_10_5" = callPackage ({ mkDerivation, base, mtl, QuickCheck, stm, template-haskell , test-framework, test-framework-hunit, test-framework-quickcheck2 , transformers }: mkDerivation { pname = "exceptions"; - version = "0.10.4"; - sha256 = "1kw4pmx7j7zwbdwm0dyn9rcs6kp4byfxy48861yxdz6gam1zn2sd"; - revision = "3"; - editedCabalFile = "0b9bml5j46zz62ik2827ndsd5293dh8630086x1mngb80gnrml3y"; + version = "0.10.5"; + sha256 = "12xz2x16pv1a6csz64bpl22v40vykjwvdaiz39i8f8nkwasc1qv6"; + revision = "1"; + editedCabalFile = "0ix0ihq1wm9k24r7pisdpvnh5fysy03d0rxfyc6qx9m2bflk9imj"; libraryHaskellDepends = [ base mtl stm template-haskell transformers ]; @@ -93045,8 +93306,6 @@ self: { ]; description = "Fast incremental vi and emacs tags"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "fast-tagsoup" = callPackage @@ -97950,8 +98209,8 @@ self: { pname = "foldl"; version = "1.4.12"; sha256 = "0zf4yljh3s2ddxa7dhzdglmylj14kfldhkclc44g37zvjq6kcnag"; - revision = "2"; - editedCabalFile = "0ggl6djyqrc56j8iy56f61jki7v3ym35ykd944z045gpjzbaq3c6"; + revision = "3"; + editedCabalFile = "1xijnq8qkmrj2w7h6gr2vy8a0ajhiapzi2fain5pgcllli2fny2r"; libraryHaskellDepends = [ base bytestring comonad containers contravariant hashable primitive profunctors random semigroupoids text transformers @@ -99455,6 +99714,25 @@ self: { license = lib.licenses.bsd3; }) {}; + "free_5_1_8" = callPackage + ({ mkDerivation, base, comonad, containers, distributive + , exceptions, indexed-traversable, mtl, profunctors, semigroupoids + , template-haskell, th-abstraction, transformers, transformers-base + }: + mkDerivation { + pname = "free"; + version = "5.1.8"; + sha256 = "0h43a7w6yjnvqp3rl8qvcjl9a0hg86l0h7zxkikd0mw8n65l8xvr"; + libraryHaskellDepends = [ + base comonad containers distributive exceptions indexed-traversable + mtl profunctors semigroupoids template-haskell th-abstraction + transformers transformers-base + ]; + description = "Monads for free"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "free-algebras" = callPackage ({ mkDerivation, base, containers, data-fix, dlist, free, groups , hedgehog, kan-extensions, mtl, transformers @@ -101614,6 +101892,7 @@ self: { description = "A fused-effects adapter for squeal-postgresql"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "fused-effects-th" = callPackage @@ -101678,7 +101957,7 @@ self: { "futhark" = callPackage ({ mkDerivation, aeson, alex, ansi-terminal, array, base , base16-bytestring, binary, blaze-html, bmp, bytestring - , bytestring-to-vector, cmark-gfm, containers, cryptohash-md5 + , bytestring-to-vector, cmark-gfm, containers, cryptohash-md5, Diff , directory, directory-tree, dlist, file-embed, filepath, free , futhark-data, futhark-manifest, futhark-server, githash, half , happy, haskeline, hslogger, language-c-quote, lens, lsp @@ -101690,23 +101969,23 @@ self: { }: mkDerivation { pname = "futhark"; - version = "0.21.10"; - sha256 = "0mm0awd1sf5sfb6i1yjbcm67j2nhqpfnn11q8p61z3b2py6lnzzf"; + version = "0.21.11"; + sha256 = "1n8id7h0qpgifbmkdh3ma72kpv6hn6siyfjd62day3zywrjfxd61"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson ansi-terminal array base base16-bytestring binary blaze-html bmp bytestring bytestring-to-vector cmark-gfm containers - cryptohash-md5 directory directory-tree dlist file-embed filepath - free futhark-data futhark-manifest futhark-server githash half - haskeline hslogger language-c-quote lens lsp mainland-pretty + cryptohash-md5 Diff directory directory-tree dlist file-embed + filepath free futhark-data futhark-manifest futhark-server githash + half haskeline hslogger language-c-quote lens lsp mainland-pretty megaparsec mtl mwc-random neat-interpolation parallel process process-extras random regex-tdfa srcloc statistics template-haskell temporary terminal-size text time transformers vector versions zip-archive zlib ]; libraryToolDepends = [ alex happy ]; - executableHaskellDepends = [ base text ]; + executableHaskellDepends = [ base ]; testHaskellDepends = [ base containers megaparsec mtl parser-combinators QuickCheck tasty tasty-hunit tasty-quickcheck text @@ -103548,6 +103827,8 @@ self: { pname = "generic-lens"; version = "2.2.1.0"; sha256 = "17an4669igzs6pwzqxnpkx9gmxwz64p32d1zcinhh5agd56y70pa"; + revision = "1"; + editedCabalFile = "1wzxvfi9kzhbglih1syqhx42kcsvlinnfc338fl731k6hc95hmlm"; libraryHaskellDepends = [ base generic-lens-core profunctors text ]; @@ -103564,6 +103845,8 @@ self: { pname = "generic-lens-core"; version = "2.2.1.0"; sha256 = "08i4c9yb6z84iknrnl9f3f343121j7ilp0a679v81nsjm9xz3rlf"; + revision = "1"; + editedCabalFile = "1dbjhd6k7ypqa9f4h9v2xndgb4mjhfli3n1vjm8r8ga0kfndbqfn"; libraryHaskellDepends = [ base indexed-profunctors text ]; description = "Generically derive traversals, lenses and prisms"; license = lib.licenses.bsd3; @@ -103664,6 +103947,8 @@ self: { pname = "generic-optics"; version = "2.2.1.0"; sha256 = "1bw7bbkrd1sfshzx7v1nbdnkxc82krw96x7vnl7myz9748m4472z"; + revision = "1"; + editedCabalFile = "13wkbs8x0clkqzi4xqin89qywpky8jkpz9cxgwsglbpcyw11jvgq"; libraryHaskellDepends = [ base generic-lens-core optics-core text ]; @@ -105036,15 +105321,21 @@ self: { "geomancy" = callPackage ({ mkDerivation, base, containers, criterion, deepseq, hedgehog - , linear + , linear, mono-traversable, simple-affine-space }: mkDerivation { pname = "geomancy"; - version = "0.2.3.0"; - sha256 = "1li0411y725c5k6zmkki0brz4w4yksxfdbk2ggq31yirmdihc5al"; - libraryHaskellDepends = [ base containers deepseq ]; - testHaskellDepends = [ base deepseq hedgehog linear ]; - benchmarkHaskellDepends = [ base criterion deepseq linear ]; + version = "0.2.4.0"; + sha256 = "1wc9fza03afha1ni7jh9gpm39k20d6n5kmjgkpd06aqpf6yaqfcl"; + libraryHaskellDepends = [ + base containers deepseq mono-traversable simple-affine-space + ]; + testHaskellDepends = [ + base deepseq hedgehog linear simple-affine-space + ]; + benchmarkHaskellDepends = [ + base criterion deepseq linear simple-affine-space + ]; description = "Geometry and matrix manipulation"; license = lib.licenses.bsd3; }) {}; @@ -105503,19 +105794,19 @@ self: { }) {}; "ghc-debug-brick" = callPackage - ({ mkDerivation, base, brick, containers, cursor, directory + ({ mkDerivation, base, brick, containers, deepseq, directory , exceptions, filepath, ghc-debug-client, ghc-debug-common , ghc-debug-convention, microlens, microlens-platform, text, time , unordered-containers, vty }: mkDerivation { pname = "ghc-debug-brick"; - version = "0.2.0.0"; - sha256 = "1jv2n0bxy37whsxs4drajs0mx83qng82qr62igicfnlqsvd5sk36"; + version = "0.2.1.0"; + sha256 = "02zkfndppp386va6vp6mamsv195sdvvwa3dj0ff2kp3kb4gbny7n"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ - base brick containers cursor directory exceptions filepath + base brick containers deepseq directory exceptions filepath ghc-debug-client ghc-debug-common ghc-debug-convention microlens microlens-platform text time unordered-containers vty ]; @@ -105533,10 +105824,8 @@ self: { }: mkDerivation { pname = "ghc-debug-client"; - version = "0.2.0.0"; - sha256 = "1v0hmvf5larppyx52fhvpwjbzjhn6rl9f5naikqmljp37dv503na"; - revision = "1"; - editedCabalFile = "0m2dqp89zwl3hwyvbw71wzh2h939cch5rkx3h4aabcaqj71qi9gi"; + version = "0.2.1.0"; + sha256 = "0mjpq4rp9dp62dazhcasvggwmmhnn73z8xfxdyd29lh6n7yy2q4q"; libraryHaskellDepends = [ async base binary bitwise containers directory dom-lt eventlog2html filepath ghc-debug-common ghc-debug-convention ghc-prim hashable @@ -105555,10 +105844,8 @@ self: { }: mkDerivation { pname = "ghc-debug-common"; - version = "0.2.0.0"; - sha256 = "1fw9whgh2zayvaagn1f7x1qkwvznpjhpn4zkfnfav24pkmpf5ijy"; - revision = "2"; - editedCabalFile = "1cq2bgq9n6295912p8bfwkrg9jqx36x4zxzj468pkr3dsfhjqr23"; + version = "0.2.1.0"; + sha256 = "1p895vq31ijkp8lgscxrvpiq2z97l9wx8rcji4nf8kc3bkprk8kl"; libraryHaskellDepends = [ array base binary bytestring containers cpu deepseq directory dom-lt filepath ghc-debug-convention ghc-heap hashable transformers @@ -105588,10 +105875,8 @@ self: { }: mkDerivation { pname = "ghc-debug-stub"; - version = "0.2.0.0"; - sha256 = "1zi388jwdad9qlj1v0ihrv67abknbhh7scr1fymc808xmkkwk701"; - revision = "1"; - editedCabalFile = "0irnhf32ghxch8r0p2vd7afj3282a1r9lval2an2mj99kcllhl6d"; + version = "0.2.1.0"; + sha256 = "1wjmlm9m6iwpn7bz3bjww7vlbp5jac5a8adzzfcxsgw4dz47n221"; libraryHaskellDepends = [ base directory filepath ghc-debug-convention ghc-prim ]; @@ -107462,8 +107747,8 @@ self: { }: mkDerivation { pname = "ghcup"; - version = "0.1.17.6"; - sha256 = "12paw1jpa0lr6as5a8zapakcisrjvrm0npm7h4xakksnzkbgv05y"; + version = "0.1.17.10"; + sha256 = "18vskipglwds41l1gr1ks7h1h30hasrjdhpmcdm4nhg0ifmjzsag"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -110751,26 +111036,25 @@ self: { "glirc" = callPackage ({ mkDerivation, async, attoparsec, base, base64-bytestring , bytestring, Cabal, config-schema, config-value, containers - , directory, filepath, free, gitrev, hashable, hookup, HsOpenSSL - , HUnit, irc-core, kan-extensions, lens, network, process, psqueues - , random, regex-tdfa, split, stm, template-haskell, text, time - , transformers, unix, unordered-containers, vector, vty + , curve25519, directory, filepath, free, githash, hashable, hookup + , HsOpenSSL, HUnit, irc-core, kan-extensions, lens, network + , process, psqueues, random, regex-tdfa, split, stm + , template-haskell, text, time, transformers, unix + , unordered-containers, vector, vty }: mkDerivation { pname = "glirc"; - version = "2.38"; - sha256 = "1azykkb9rc4q97v9xiqfjv0iys0wswa3nsy10smdkpp7yvv4mca7"; - revision = "2"; - editedCabalFile = "082ndcgp9z1w5pa3s5ss7kqhg66y01lbj57k14zq6zs6c54s4b5i"; + version = "2.39"; + sha256 = "1ws5hvz37lkf3bg4wlx4vfk5pdgf5hnkwzdlwgr22pfmr7p5nc2z"; isLibrary = true; isExecutable = true; setupHaskellDepends = [ base Cabal filepath ]; libraryHaskellDepends = [ async attoparsec base base64-bytestring bytestring config-schema - config-value containers directory filepath free gitrev hashable - hookup HsOpenSSL irc-core kan-extensions lens network process - psqueues random regex-tdfa split stm template-haskell text time - transformers unix unordered-containers vector vty + config-value containers curve25519 directory filepath free githash + hashable hookup HsOpenSSL irc-core kan-extensions lens network + process psqueues random regex-tdfa split stm template-haskell text + time transformers unix unordered-containers vector vty ]; executableHaskellDepends = [ base lens text vty ]; testHaskellDepends = [ base HUnit ]; @@ -115852,6 +116136,22 @@ self: { license = lib.licenses.bsd3; }) {}; + "graphs_0_7_2" = callPackage + ({ mkDerivation, array, base, containers, transformers + , transformers-compat, void + }: + mkDerivation { + pname = "graphs"; + version = "0.7.2"; + sha256 = "1isdy8qx3q00pb3jinvvmfvzhwblr3yhj4dzmlv0hdj0yi9j8bly"; + libraryHaskellDepends = [ + array base containers transformers transformers-compat void + ]; + description = "A simple monadic graph library"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "graphted" = callPackage ({ mkDerivation, base, indexed }: mkDerivation { @@ -119766,14 +120066,15 @@ self: { ({ mkDerivation, base, containers, deepseq, fgl, hashable, HUnit , monad-primitive, primitive, QuickCheck, ref-tf, test-framework , test-framework-hunit, test-framework-quickcheck2, vector + , vector-th-unbox }: mkDerivation { pname = "haggle"; - version = "0.1.0.1"; - sha256 = "1j598hcjw0p9iac4h91w47k4rh9k0h2r9gk3rrfkklvw84aznkrz"; + version = "0.2"; + sha256 = "1n7rg63bz283d938vr2w7ghza2qmljw04bg1wr4zhpylw6jjy2b7"; libraryHaskellDepends = [ base containers deepseq hashable monad-primitive primitive ref-tf - vector + vector vector-th-unbox ]; testHaskellDepends = [ base containers fgl HUnit QuickCheck test-framework @@ -122089,6 +122390,8 @@ self: { pname = "happy"; version = "1.19.12"; sha256 = "03xlmq6qmdx4zvzw8bp33kd9g7yvcq5cz4wg50xilw812kj276pv"; + revision = "1"; + editedCabalFile = "13wydw1mmdry4l9r63vxjk4h55ci9hgwzn1a842qqk1m2rb4xiln"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -122105,6 +122408,8 @@ self: { pname = "happy"; version = "1.20.0"; sha256 = "1346r2x5ravs5fqma65bzjragqbb2g6v41wz9maknwm2jf7kl79v"; + revision = "1"; + editedCabalFile = "16dy1cv942rizxp8slnnbwi5l24ggsmy38madbin9scz38idqisx"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -133608,8 +133913,8 @@ self: { }: mkDerivation { pname = "higgledy"; - version = "0.4.1.1"; - sha256 = "1aqln8y055ysnzw3sqfdi6rm63a4a8c3n3f4fgv1rqmx76vsvsaz"; + version = "0.4.2.0"; + sha256 = "01hl63wq6rb2wgml850wawq07sn9vl8d2hv1jc3m366dxdqqhy8j"; setupHaskellDepends = [ base Cabal cabal-doctest ]; libraryHaskellDepends = [ barbies base generic-lens generic-lens-core named QuickCheck @@ -135843,8 +136148,8 @@ self: { pname = "hlrdb"; version = "0.3.2.0"; sha256 = "1k4dsd4h3fv1ag753gwxvirfrj53ra4ik948pyacq31c16mz1l2p"; - revision = "2"; - editedCabalFile = "15z6f2qqis3qi1cfq43hhcqgcsinx58ha3bghh0pfybqysvbjmmd"; + revision = "3"; + editedCabalFile = "1r8dmsfbsm4lhak2hskid03bad2fvnb71v779grzf5hy6y46jc42"; libraryHaskellDepends = [ base base64-bytestring bytestring cryptonite hashable hedis hlrdb-core memory random store time unordered-containers zstd @@ -135862,6 +136167,8 @@ self: { pname = "hlrdb-core"; version = "0.1.6.2"; sha256 = "19pnwjlcg504kpvxq8r1hwb533adi2d919vgb1lr25c9bdyxc32n"; + revision = "2"; + editedCabalFile = "1iqbd10hym2xh2ydslqpd4gvr6d4k06vmi4bj7d3xw8y4x9fmzaq"; libraryHaskellDepends = [ base bytestring hashable hedis lens mtl profunctors random time unordered-containers @@ -139902,23 +140209,20 @@ self: { "hpqtypes-extras" = callPackage ({ mkDerivation, base, base16-bytestring, bytestring, containers - , cryptohash, deepseq, exceptions, extra, fields-json, hpqtypes - , lifted-base, log-base, monad-control, mtl, QuickCheck, safe - , semigroups, tasty, tasty-bench, tasty-hunit, text, text-show - , time, transformers, transformers-base, uuid-types + , cryptohash, deepseq, exceptions, extra, hpqtypes, log-base, mtl + , tasty, tasty-bench, tasty-hunit, text, text-show, uuid-types }: mkDerivation { pname = "hpqtypes-extras"; - version = "1.14.1.0"; - sha256 = "17ixli3w1ixa7hspvcgggyslpxgprl40vjjavi81c44crj7w4m4q"; + version = "1.15.0.0"; + sha256 = "00v1ig0py49xbwifk107284g8lx149x54nkfcfaj7mnyf7k9j214"; libraryHaskellDepends = [ base base16-bytestring bytestring containers cryptohash exceptions - extra fields-json hpqtypes lifted-base log-base monad-control mtl - safe semigroups text text-show transformers-base + extra hpqtypes log-base mtl text text-show ]; testHaskellDepends = [ - base exceptions hpqtypes lifted-base log-base monad-control - QuickCheck tasty tasty-hunit text time transformers uuid-types + base containers exceptions hpqtypes log-base tasty tasty-hunit text + uuid-types ]; benchmarkHaskellDepends = [ base deepseq tasty-bench ]; description = "Extra utilities for hpqtypes library"; @@ -144275,14 +144579,14 @@ self: { license = lib.licenses.mit; }) {}; - "hspec_2_9_7" = callPackage + "hspec_2_10_0" = callPackage ({ mkDerivation, base, hspec-core, hspec-discover , hspec-expectations, QuickCheck }: mkDerivation { pname = "hspec"; - version = "2.9.7"; - sha256 = "092sfqjkargxxszp9jjqa8ldjz0xv34jwn6k21q59ys5ckvsrpc1"; + version = "2.10.0"; + sha256 = "1l440vdlm7q8rzjz0kqw688l159qiplfgsvhz81snqgn1ja5wk4m"; libraryHaskellDepends = [ base hspec-core hspec-discover hspec-expectations QuickCheck ]; @@ -144402,7 +144706,7 @@ self: { license = lib.licenses.mit; }) {}; - "hspec-core_2_9_7" = callPackage + "hspec-core_2_10_0" = callPackage ({ mkDerivation, ansi-terminal, array, base, base-orphans , call-stack, clock, deepseq, directory, filepath, ghc, ghc-boot-th , hspec-expectations, hspec-meta, HUnit, process, QuickCheck @@ -144411,8 +144715,8 @@ self: { }: mkDerivation { pname = "hspec-core"; - version = "2.9.7"; - sha256 = "040rzqiqwkp373jjpij8lkmv08pp2ya92zzcf95bw8px215rp08n"; + version = "2.10.0"; + sha256 = "1hkr0npvysqby6qy0fnsq1dv1svp42jgn1isd2b6nn4l6a29k95g"; libraryHaskellDepends = [ ansi-terminal array base call-stack clock deepseq directory filepath ghc ghc-boot-th hspec-expectations HUnit QuickCheck @@ -144491,14 +144795,14 @@ self: { maintainers = with lib.maintainers; [ maralorn ]; }) {}; - "hspec-discover_2_9_7" = callPackage + "hspec-discover_2_10_0" = callPackage ({ mkDerivation, base, directory, filepath, hspec-meta, mockery , QuickCheck }: mkDerivation { pname = "hspec-discover"; - version = "2.9.7"; - sha256 = "0536kdxjw6p8b6gcwvmr22jbmb6cgzbddi0fkd01b2m847z37sb5"; + version = "2.10.0"; + sha256 = "0r3zi40g5y85z8n3n2wyiicv5gsp9isjx4gap0m400nxr8cqgmxm"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ base directory filepath ]; @@ -144542,6 +144846,24 @@ self: { license = lib.licenses.mit; }) {}; + "hspec-expectations-json_1_0_0_7" = callPackage + ({ mkDerivation, aeson, aeson-pretty, aeson-qq, base, Diff, hspec + , HUnit, scientific, text, unordered-containers, vector + }: + mkDerivation { + pname = "hspec-expectations-json"; + version = "1.0.0.7"; + sha256 = "0042xf11w74bx7mlly2ca98778jqyb4p2l9iy92gyys85zn5219v"; + libraryHaskellDepends = [ + aeson aeson-pretty base Diff HUnit scientific text + unordered-containers vector + ]; + testHaskellDepends = [ aeson-qq base hspec ]; + description = "Hspec expectations for JSON Values"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "hspec-expectations-lens" = callPackage ({ mkDerivation, base, hspec, hspec-expectations, HUnit, lens , silently @@ -144924,6 +145246,22 @@ self: { license = lib.licenses.bsd3; }) {}; + "hspec-need-env_0_1_0_9" = callPackage + ({ mkDerivation, base, hspec, hspec-core, hspec-discover + , hspec-expectations, setenv, transformers + }: + mkDerivation { + pname = "hspec-need-env"; + version = "0.1.0.9"; + sha256 = "00w4zmb7kzyb5py3kxpx6xwwjy6vz1qb95q8cgk575ipysqskmfj"; + libraryHaskellDepends = [ base hspec-core hspec-expectations ]; + testHaskellDepends = [ base hspec hspec-core setenv transformers ]; + testToolDepends = [ hspec-discover ]; + description = "Read environment variables for hspec tests"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "hspec-parsec" = callPackage ({ mkDerivation, base, hspec, hspec-expectations, parsec }: mkDerivation { @@ -145057,6 +145395,27 @@ self: { license = lib.licenses.mit; }) {}; + "hspec-smallcheck_0_5_3" = callPackage + ({ mkDerivation, base, base-orphans, call-stack, hspec, hspec-core + , hspec-discover, HUnit, QuickCheck, smallcheck + }: + mkDerivation { + pname = "hspec-smallcheck"; + version = "0.5.3"; + sha256 = "0cjhmhpdll3zg3cy1alqghw86msgafi9b67w5vhd73w7wi5hm0gm"; + libraryHaskellDepends = [ + base call-stack hspec-core HUnit smallcheck + ]; + testHaskellDepends = [ + base base-orphans call-stack hspec hspec-core HUnit QuickCheck + smallcheck + ]; + testToolDepends = [ hspec-discover ]; + description = "SmallCheck support for the Hspec testing framework"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "hspec-snap" = callPackage ({ mkDerivation, aeson, base, bytestring, containers , digestive-functors, directory, HandsomeSoup, hspec, hspec-core @@ -146450,6 +146809,20 @@ self: { license = lib.licenses.mit; }) {}; + "html-entities_1_1_4_6" = callPackage + ({ mkDerivation, attoparsec, base, text, unordered-containers }: + mkDerivation { + pname = "html-entities"; + version = "1.1.4.6"; + sha256 = "16b1n73qg7sv5is18i0zyg5x1i68zw2h9nh115zlqnavmdj913yv"; + libraryHaskellDepends = [ + attoparsec base text unordered-containers + ]; + description = "A codec library for HTML-escaped text and HTML-entities"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "html-entity" = callPackage ({ mkDerivation, attoparsec, base, Cabal, cabal-doctest, doctest , text, unordered-containers @@ -147800,6 +148173,31 @@ self: { license = lib.licenses.bsd3; }) {}; + "http-reverse-proxy_0_6_0_1" = callPackage + ({ mkDerivation, base, blaze-builder, bytestring, case-insensitive + , conduit, conduit-extra, containers, hspec, http-client + , http-conduit, http-types, network, resourcet, streaming-commons + , text, transformers, unliftio, wai, wai-logger, warp, word8 + }: + mkDerivation { + pname = "http-reverse-proxy"; + version = "0.6.0.1"; + sha256 = "0a0fc9rqr1crbb1sbq3gzbkwjcfff662d4bgmy3vzspk7ky697ld"; + libraryHaskellDepends = [ + base blaze-builder bytestring case-insensitive conduit + conduit-extra containers http-client http-types network resourcet + streaming-commons text transformers unliftio wai wai-logger word8 + ]; + testHaskellDepends = [ + base blaze-builder bytestring conduit conduit-extra hspec + http-conduit http-types network resourcet streaming-commons + transformers unliftio wai warp + ]; + description = "Reverse proxy HTTP requests, either over raw sockets or with WAI"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "http-rfc7807" = callPackage ({ mkDerivation, aeson, base, call-stack, hspec-expectations-json , http-media, http-types, HUnit, servant, servant-server, tasty @@ -155811,19 +156209,19 @@ self: { "intricacy" = callPackage ({ mkDerivation, array, base, binary, bytestring, containers , cryptonite, directory, exceptions, filepath, hscurses, memory - , mtl, ncurses, network-fancy, random, safe, SDL, SDL-gfx + , mtl, ncurses, network-simple, random, safe, SDL, SDL-gfx , SDL-mixer, SDL-ttf, stm, time, transformers, vector }: mkDerivation { pname = "intricacy"; - version = "0.8.0.1"; - sha256 = "0kyhswgg8iyxvicgpf0f5rn3gk4k620crk02xd4bn797xws5bzzs"; + version = "0.8.1"; + sha256 = "0jpg3rvngsil7zii57inax3im92n1ahv6lcrb3swikahbli0d8wc"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; executableHaskellDepends = [ array base binary bytestring containers cryptonite directory - exceptions filepath hscurses memory mtl network-fancy random safe + exceptions filepath hscurses memory mtl network-simple random safe SDL SDL-gfx SDL-mixer SDL-ttf stm time transformers vector ]; executablePkgconfigDepends = [ ncurses ]; @@ -155984,6 +156382,29 @@ self: { license = lib.licenses.bsd2; }) {}; + "invariant_0_5_6" = callPackage + ({ mkDerivation, array, base, bifunctors, comonad, containers + , contravariant, ghc-prim, hspec, hspec-discover, profunctors + , QuickCheck, StateVar, stm, tagged, template-haskell + , th-abstraction, transformers, transformers-compat + , unordered-containers + }: + mkDerivation { + pname = "invariant"; + version = "0.5.6"; + sha256 = "1l73wlnmh09187w8y61qyjjycpljds9lydy16ifa08bmmbxgkzcw"; + libraryHaskellDepends = [ + array base bifunctors comonad containers contravariant ghc-prim + profunctors StateVar stm tagged template-haskell th-abstraction + transformers transformers-compat unordered-containers + ]; + testHaskellDepends = [ base hspec QuickCheck template-haskell ]; + testToolDepends = [ hspec-discover ]; + description = "Haskell98 invariant functors"; + license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + }) {}; + "inventory" = callPackage ({ mkDerivation, appendmap, array, base, bytestring, containers , directory, filepath, ghc, ghc-paths, mtl, tasty, tasty-hunit @@ -158152,8 +158573,8 @@ self: { }: mkDerivation { pname = "ixset-typed"; - version = "0.5"; - sha256 = "07n7qfi8slmrlgzvrkddr17b792phhb140q9gb5pm68kk1im4izs"; + version = "0.5.1.0"; + sha256 = "033rm2sik1qz4dmqlabjzwwqw38vj3hrwlkmhm554yvk1n3v9dq8"; libraryHaskellDepends = [ base containers deepseq safecopy syb template-haskell ]; @@ -160914,8 +161335,8 @@ self: { }: mkDerivation { pname = "jsonrpc-conduit"; - version = "0.3.8"; - sha256 = "196w8jmb8107shbrdhr17axl6x2sx088hdys2yfpqmrcsxc77z45"; + version = "0.3.9"; + sha256 = "0qj3rlh695nbs3kxix2r7h4np99q6pn7x8x86j4785d6d2gly1ik"; libraryHaskellDepends = [ aeson attoparsec base bytestring conduit conduit-extra mtl text transformers unordered-containers @@ -161725,6 +162146,25 @@ self: { license = lib.licenses.bsd3; }) {}; + "kan-extensions_5_2_4" = callPackage + ({ mkDerivation, adjunctions, array, base, comonad, containers + , contravariant, distributive, free, invariant, mtl, profunctors + , semigroupoids, tagged, transformers, transformers-compat + }: + mkDerivation { + pname = "kan-extensions"; + version = "5.2.4"; + sha256 = "0qnds0vwhsqznirqalm8f4c0qsmp1awfhc4fn2rx5agl5az3zip8"; + libraryHaskellDepends = [ + adjunctions array base comonad containers contravariant + distributive free invariant mtl profunctors semigroupoids tagged + transformers transformers-compat + ]; + description = "Kan extensions, Kan lifts, the Yoneda lemma, and (co)density (co)monads"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "kangaroo" = callPackage ({ mkDerivation, array, base }: mkDerivation { @@ -161975,6 +162415,42 @@ self: { license = lib.licenses.bsd3; }) {}; + "katip_0_8_7_1" = callPackage + ({ mkDerivation, aeson, async, auto-update, base, blaze-builder + , bytestring, containers, criterion, deepseq, directory, either + , filepath, hostname, microlens, microlens-th, monad-control, mtl + , old-locale, quickcheck-instances, regex-tdfa, resourcet + , safe-exceptions, scientific, semigroups, stm, string-conv, tasty + , tasty-golden, tasty-hunit, tasty-quickcheck, template-haskell + , text, time, time-locale-compat, transformers, transformers-base + , transformers-compat, unix, unliftio-core, unordered-containers + }: + mkDerivation { + pname = "katip"; + version = "0.8.7.1"; + sha256 = "157mc5w05j82020g0f65bdjz839fs6cd263xz5z7p00h0y576vg6"; + libraryHaskellDepends = [ + aeson async auto-update base bytestring containers either hostname + microlens microlens-th monad-control mtl old-locale resourcet + safe-exceptions scientific semigroups stm string-conv + template-haskell text time transformers transformers-base + transformers-compat unix unliftio-core unordered-containers + ]; + testHaskellDepends = [ + aeson base bytestring containers directory microlens + quickcheck-instances regex-tdfa safe-exceptions stm tasty + tasty-golden tasty-hunit tasty-quickcheck template-haskell text + time time-locale-compat unordered-containers + ]; + benchmarkHaskellDepends = [ + aeson async base blaze-builder criterion deepseq directory filepath + safe-exceptions text time transformers unix + ]; + description = "A structured logging framework"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "katip-datadog" = callPackage ({ mkDerivation, aeson, async, attoparsec, base, binary, bytestring , conduit, conduit-extra, connection, containers, katip, network @@ -162866,25 +163342,25 @@ self: { }) {inherit (pkgs) SDL_mixer;}; "keid-core" = callPackage - ({ mkDerivation, adjunctions, base, binary, bytestring - , cryptohash-md5, derive-storable, derive-storable-plugin - , distributive, file-embed, foldl, geomancy, GLFW-b, ktx-codec - , neat-interpolation, optparse-applicative, optparse-simple - , resourcet, rio, rio-app, serialise, StateVar, tagged - , template-haskell, text, transformers, unagi-chan, unliftio - , vector, vulkan, vulkan-utils, VulkanMemoryAllocator, zstd + ({ mkDerivation, base, binary, bytestring, cryptohash-md5 + , derive-storable, derive-storable-plugin, file-embed, foldl + , geomancy, GLFW-b, ktx-codec, neat-interpolation + , optparse-applicative, optparse-simple, resourcet, rio, rio-app + , serialise, StateVar, tagged, template-haskell, text, transformers + , unagi-chan, unliftio, vector, vulkan, vulkan-utils + , VulkanMemoryAllocator, zstd }: mkDerivation { pname = "keid-core"; - version = "0.1.6.0"; - sha256 = "1aa46qwniq9j14axqhijf1zx1v8kay55f1mawvnfcry85jf0iqhm"; + version = "0.1.6.1"; + sha256 = "0r0gkq8hn3gkfpc9c982fhncdfbbk2y06lll515ycs55456bqdnh"; libraryHaskellDepends = [ - adjunctions base binary bytestring cryptohash-md5 derive-storable - derive-storable-plugin distributive file-embed foldl geomancy - GLFW-b ktx-codec neat-interpolation optparse-applicative - optparse-simple resourcet rio rio-app serialise StateVar tagged - template-haskell text transformers unagi-chan unliftio vector - vulkan vulkan-utils VulkanMemoryAllocator zstd + base binary bytestring cryptohash-md5 derive-storable + derive-storable-plugin file-embed foldl geomancy GLFW-b ktx-codec + neat-interpolation optparse-applicative optparse-simple resourcet + rio rio-app serialise StateVar tagged template-haskell text + transformers unagi-chan unliftio vector vulkan vulkan-utils + VulkanMemoryAllocator zstd ]; description = "Core parts of Keid engine"; license = lib.licenses.bsd3; @@ -162896,14 +163372,30 @@ self: { broken = true; }) {}; + "keid-frp-banana" = callPackage + ({ mkDerivation, base, geomancy, keid-core, reactive-banana + , resourcet, rio, these, vulkan + }: + mkDerivation { + pname = "keid-frp-banana"; + version = "0.1.0.0"; + sha256 = "1d0il5v7chn9gyr5gs15d35pyls1ynnn6jfysx7rqhzhglgvc164"; + libraryHaskellDepends = [ + base geomancy keid-core reactive-banana resourcet rio these vulkan + ]; + description = "Reactive Banana integration for Keid engine"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "keid-geometry" = callPackage ({ mkDerivation, base, geomancy, keid-core, mtl, rio, vector , vulkan }: mkDerivation { pname = "keid-geometry"; - version = "0.1.1.1"; - sha256 = "1jicgdkxwmi16a7bqc3qh9qr2a691nlxk87b5kh674jnhsr59db2"; + version = "0.1.1.2"; + sha256 = "0pyszmw5h9qgsxx76lgc65i75fgimwg8bwwkk5slsk0ggnadwj6w"; libraryHaskellDepends = [ base geomancy keid-core mtl rio vector vulkan ]; @@ -162917,21 +163409,20 @@ self: { }) {}; "keid-render-basic" = callPackage - ({ mkDerivation, adjunctions, aeson, base, bytestring - , derive-storable, derive-storable-plugin, distributive, file-embed - , geomancy, keid-core, keid-geometry, neat-interpolation, resourcet - , rio, tagged, text, unliftio, vector, vulkan, vulkan-utils + ({ mkDerivation, aeson, base, bytestring, derive-storable + , derive-storable-plugin, file-embed, geomancy, keid-core + , keid-geometry, neat-interpolation, resourcet, rio, tagged, text + , unliftio, vector, vulkan, vulkan-utils }: mkDerivation { pname = "keid-render-basic"; - version = "0.1.6.0"; - sha256 = "1dqrx8kvm0hkm0xwgkpihs6bkzgl24rm4jw0kb7ld9j4c8j5gllm"; + version = "0.1.6.1"; + sha256 = "0rp06ap82ky70qhp8prhyi3vkynrn3c2wilr2lmlh2gv64q2ri0g"; enableSeparateDataOutput = true; libraryHaskellDepends = [ - adjunctions aeson base bytestring derive-storable - derive-storable-plugin distributive file-embed geomancy keid-core - keid-geometry neat-interpolation resourcet rio tagged text unliftio - vector vulkan vulkan-utils + aeson base bytestring derive-storable derive-storable-plugin + file-embed geomancy keid-core keid-geometry neat-interpolation + resourcet rio tagged text unliftio vector vulkan vulkan-utils ]; description = "Basic rendering programs for Keid engine"; license = lib.licenses.bsd3; @@ -162987,8 +163478,8 @@ self: { }: mkDerivation { pname = "keid-ui-dearimgui"; - version = "0.1.1.0"; - sha256 = "10ivrkbhnd9kwrwywspaj0z2agrddjrf4cv4rxpij28xrhj5jbav"; + version = "0.1.1.1"; + sha256 = "0qxkgrayb365mj7sknzq7w9cxs5ppfzg272cah632bvs70qkl7xl"; libraryHaskellDepends = [ base binary bytestring dear-imgui GLFW-b keid-core resourcet rio rio-app unliftio vector vulkan vulkan-utils VulkanMemoryAllocator @@ -163111,33 +163602,34 @@ self: { "keter" = callPackage ({ mkDerivation, aeson, array, async, attoparsec, base , blaze-builder, bytestring, case-insensitive, conduit - , conduit-extra, containers, data-default, directory, filepath - , fsnotify, hspec, http-client, http-conduit, http-reverse-proxy - , http-types, HUnit, indexed-traversable, lifted-base, mtl, network + , conduit-extra, containers, directory, filepath, fsnotify + , http-client, http-conduit, http-reverse-proxy, http-types, HUnit + , indexed-traversable, lifted-base, mtl, network , optparse-applicative, process, random, regex-tdfa, stm, tar - , template-haskell, text, time, tls, tls-session-manager - , transformers, unix, unix-compat, unordered-containers, vector - , wai, wai-app-static, wai-extra, warp, warp-tls, yaml, zlib + , tasty, tasty-hunit, template-haskell, text, time, tls + , tls-session-manager, transformers, unix, unix-compat + , unordered-containers, vector, wai, wai-app-static, wai-extra + , warp, warp-tls, yaml, zlib }: mkDerivation { pname = "keter"; - version = "1.9"; - sha256 = "00mgh6447p0gsvm7agy1i9a874afirirx2a7qdqnbw1m14j3mzfl"; + version = "2.0"; + sha256 = "0njwkpcsg450ix8h5ciygigphddkx6axnkiilsgwj3b70khxj68i"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson array async attoparsec base blaze-builder bytestring - case-insensitive conduit conduit-extra containers data-default - directory filepath fsnotify http-client http-conduit - http-reverse-proxy http-types indexed-traversable lifted-base mtl - network optparse-applicative process random regex-tdfa stm tar + case-insensitive conduit conduit-extra containers directory + filepath fsnotify http-client http-conduit http-reverse-proxy + http-types indexed-traversable lifted-base mtl network + optparse-applicative process random regex-tdfa stm tar template-haskell text time tls tls-session-manager transformers unix unix-compat unordered-containers vector wai wai-app-static wai-extra warp warp-tls yaml zlib ]; - executableHaskellDepends = [ base data-default filepath ]; + executableHaskellDepends = [ base filepath ]; testHaskellDepends = [ - base bytestring conduit hspec HUnit transformers unix + base bytestring conduit HUnit tasty tasty-hunit transformers unix ]; description = "Web application deployment manager, focusing on Haskell web frameworks"; license = lib.licenses.mit; @@ -163307,8 +163799,8 @@ self: { pname = "keys"; version = "3.12.3"; sha256 = "0ik6wsff306dnbz0v3gpiajlj5b558hrk9176fzcb2fclf4447nm"; - revision = "1"; - editedCabalFile = "18fapd53nby46p5103y1m2hwpixn5p12mbyvb8va71pk4b77qlcy"; + revision = "2"; + editedCabalFile = "1sb7ii9mhx77rhviqbmdc5r6wlimkmadxi1pyk7k3imdqcdzgjlp"; libraryHaskellDepends = [ array base comonad containers free hashable semigroupoids semigroups tagged transformers transformers-compat @@ -163933,8 +164425,8 @@ self: { }: mkDerivation { pname = "koji-tool"; - version = "0.8.3"; - sha256 = "17xd1755yr2acf6brwbxn3yzbndv982s7jgxbj9dmd7my6v1d9i2"; + version = "0.8.6"; + sha256 = "0743a9badhw1r8sk15b85li3kdksa53njmz39sdd19dfh4hmk8rc"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -165078,6 +165570,36 @@ self: { license = "GPL"; }) {}; + "lambdabot-telegram-plugins" = callPackage + ({ mkDerivation, base, containers, dependent-map, dependent-sum + , directory, edit-distance, haskell-src-exts-simple, lambdabot-core + , lambdabot-haskell-plugins, lifted-base, monad-control, mtl + , pretty-simple, process, regex-tdfa, split, stm + , telegram-bot-simple, text, transformers, utf8-string + }: + mkDerivation { + pname = "lambdabot-telegram-plugins"; + version = "0.2.0"; + sha256 = "1fm4amq0a0aqi2mvd0sxj5r3jziy98i2kj7qqin2q6rq0didh0y5"; + revision = "1"; + editedCabalFile = "0ag8pbnz4q9gpdd20axmz90ww260gh7i266pgfylqslz1dlmvirz"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + base containers dependent-map dependent-sum directory edit-distance + haskell-src-exts-simple lambdabot-core lifted-base monad-control + mtl pretty-simple process regex-tdfa split stm telegram-bot-simple + text transformers utf8-string + ]; + executableHaskellDepends = [ + base lambdabot-core lambdabot-haskell-plugins mtl + ]; + description = "Lambdabot for Telegram"; + license = lib.licenses.gpl2Plus; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "lambdabot-trusted" = callPackage ({ mkDerivation, base, oeis, QuickCheck, QuickCheck-safe }: mkDerivation { @@ -168722,14 +169244,14 @@ self: { license = lib.licenses.mit; }) {}; - "lens-aeson_1_2" = callPackage + "lens-aeson_1_2_1" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring, lens , scientific, text, text-short, unordered-containers, vector }: mkDerivation { pname = "lens-aeson"; - version = "1.2"; - sha256 = "1hi0y3bn3xny7w2cjzxn9j5hmfg6l7kbsji5skbj32zfrqlhkkwi"; + version = "1.2.1"; + sha256 = "08x0vbkay8d6s24fzy2iria0hl9pmq891cnzm6zl0j9j53z9jw9l"; libraryHaskellDepends = [ aeson attoparsec base bytestring lens scientific text text-short unordered-containers vector @@ -169174,6 +169696,8 @@ self: { pname = "lentil"; version = "1.5.4.0"; sha256 = "0xfsf7g9r2w30qkp4829w77hsja562jvx4n9i880j9qngi2ms2h1"; + revision = "2"; + editedCabalFile = "1n88rdsf5ayprgz1wnbx32gaff8kpixfkdkr6q4jvc896fhrhdzp"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ @@ -170820,8 +171344,8 @@ self: { pname = "lift-generics"; version = "0.2.1"; sha256 = "1qkzq8hcb6j15cslv577bmhjcxmljzsrryysdgd7r99kr3q445b4"; - revision = "1"; - editedCabalFile = "0i0qxm2fi34bnpnwk5k61yjx72pc9j8jhbx44xk176pw7y2pinxd"; + revision = "2"; + editedCabalFile = "1q6lviqfvyis3ss9w6r6j5d35is50r2favj9lkdagcmczw9c4706"; libraryHaskellDepends = [ base generic-deriving ghc-prim template-haskell th-compat ]; @@ -171736,6 +172260,8 @@ self: { pname = "linebreak"; version = "1.1.0.1"; sha256 = "11vqz7zv8ihvhbyma9j6pvxainxfg4kml9fylfjy9jpfvilxq5vq"; + revision = "1"; + editedCabalFile = "0pg3r5zvb13sfyhskyadllxpd2l7xvzvjj8r8rvlq248riq78qdc"; libraryHaskellDepends = [ base hyphenation ]; testHaskellDepends = [ base hspec hyphenation ]; description = "breaks strings to fit width"; @@ -171825,6 +172351,29 @@ self: { license = lib.licenses.publicDomain; }) {}; + "linkcheck" = callPackage + ({ mkDerivation, aeson, base, bytestring, conduit, containers + , http-client, http-client-tls, http-types, lrucache, monad-logger + , mtl, network-uri, optparse-applicative, path, path-io, retry, stm + , tagsoup, text, unliftio + }: + mkDerivation { + pname = "linkcheck"; + version = "0.1.0.0"; + sha256 = "18wb2naxqhvnvyjjmgbsa0ky98ikgrdhrcra9bxy1vfizhrpwhfn"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base bytestring conduit containers http-client + http-client-tls http-types lrucache monad-logger mtl network-uri + optparse-applicative path path-io retry stm tagsoup text unliftio + ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ base ]; + description = "Check for broken links in CI"; + license = lib.licenses.mit; + }) {}; + "linkchk" = callPackage ({ mkDerivation, base, gtk, haskell98, popenhs, regex-compat, unix }: @@ -172780,6 +173329,25 @@ self: { license = lib.licenses.mit; }) {}; + "list-t_1_0_5_2" = callPackage + ({ mkDerivation, base, base-prelude, foldl, HTF, logict, mmorph + , monad-control, mtl, mtl-prelude, semigroups, transformers + , transformers-base + }: + mkDerivation { + pname = "list-t"; + version = "1.0.5.2"; + sha256 = "0478iigfrkinhkjyq9zc4xvrbzcfvq46s6k0bj4a2sy8j41jzgww"; + libraryHaskellDepends = [ + base foldl logict mmorph monad-control mtl semigroups transformers + transformers-base + ]; + testHaskellDepends = [ base-prelude HTF mmorph mtl-prelude ]; + description = "ListT done right"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "list-t-attoparsec" = callPackage ({ mkDerivation, attoparsec, base-prelude, either, hspec, list-t , list-t-text, text, transformers @@ -172890,6 +173458,20 @@ self: { maintainers = with lib.maintainers; [ Gabriel439 ]; }) {}; + "list-transformer_1_0_8" = callPackage + ({ mkDerivation, base, doctest, mtl }: + mkDerivation { + pname = "list-transformer"; + version = "1.0.8"; + sha256 = "03rqs8hrddlbq4v3pzh42z7lh11z3klpgbmyp85i926shpm5qibh"; + libraryHaskellDepends = [ base mtl ]; + testHaskellDepends = [ base doctest ]; + description = "List monad transformer"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + maintainers = with lib.maintainers; [ Gabriel439 ]; + }) {}; + "list-tries" = callPackage ({ mkDerivation, base, binary, ChasingBottoms, containers, dlist , HUnit, QuickCheck, template-haskell, test-framework @@ -174816,6 +175398,21 @@ self: { license = lib.licenses.bsd3; }) {}; + "logict_0_8_0_0" = callPackage + ({ mkDerivation, async, base, mtl, tasty, tasty-hunit }: + mkDerivation { + pname = "logict"; + version = "0.8.0.0"; + sha256 = "0mpv50ifb3x9vfmgi1p9piwcgz8d19x0wdj789wxyhxwjpr6v4py"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ base mtl ]; + testHaskellDepends = [ async base mtl tasty tasty-hunit ]; + description = "A backtracking logic-programming monad"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "logict-sequence" = callPackage ({ mkDerivation, base, logict, mtl, sequence, type-aligned }: mkDerivation { @@ -175312,20 +175909,23 @@ self: { }) {}; "looper" = callPackage - ({ mkDerivation, aeson, base, hspec, optparse-applicative, text + ({ mkDerivation, aeson, autodocodec, autodocodec-yaml, base + , envparse, optparse-applicative, sydtest, sydtest-discover, text , time, unliftio }: mkDerivation { pname = "looper"; - version = "0.0.0.2"; - sha256 = "0w4aancb0lbfgmk2drnbc1w6bxlbdkhg0zy1qj7xp3kvgc76vqli"; + version = "0.2.0.1"; + sha256 = "0nqkqbna1fivf0ziilqrlg38hxpkhll4yv42p8r5g87d7r33jmc2"; libraryHaskellDepends = [ - aeson base optparse-applicative text time unliftio + aeson autodocodec base envparse optparse-applicative text time + unliftio ]; testHaskellDepends = [ - aeson base hspec optparse-applicative text time unliftio + autodocodec-yaml base optparse-applicative sydtest unliftio ]; - license = lib.licenses.bsd3; + testToolDepends = [ sydtest-discover ]; + license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; broken = true; }) {}; @@ -175436,8 +176036,8 @@ self: { }: mkDerivation { pname = "lorentz"; - version = "0.13.3"; - sha256 = "158zbmyhia8dcr8fcqg7xqc3xfq6f3i73g7dqbidcysh6c0fwh0p"; + version = "0.13.4"; + sha256 = "10lldpp9618ybgwcy8zvcc8m2q5i0kslxfrd2yhis1d1gd40wglb"; libraryHaskellDepends = [ aeson-pretty base-noprelude bimap bytestring constraints containers cryptonite data-default first-class-families fmt lens morley @@ -175729,6 +176329,8 @@ self: { pname = "lsp"; version = "1.4.0.0"; sha256 = "18hnb4k3zwjxp3r5jrgrbakvqr2d16azp6jwmfv5lq5n8xn6mwgv"; + revision = "1"; + editedCabalFile = "01a4c4qr2zf0izawrkhbw831hawnl576ckw1an07lxvxdif68py4"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -175758,6 +176360,8 @@ self: { pname = "lsp-test"; version = "0.14.0.2"; sha256 = "1capjilca74cqiwmrhbl1an6ih3227n3g417dfvql0lffa3j6qsf"; + revision = "1"; + editedCabalFile = "0szqlr1brhr1z2m2fwqj98ghh73d2sim4r5mbqzm072f6iycl6ky"; libraryHaskellDepends = [ aeson aeson-pretty ansi-terminal async base bytestring conduit conduit-parse containers data-default Diff directory filepath Glob @@ -176076,8 +176680,8 @@ self: { pname = "lucid"; version = "2.11.0"; sha256 = "1m1f13vxn3pwc7wvhx0czzxlx2ws8lzdgxlxd1707cx79jyib5sl"; - revision = "1"; - editedCabalFile = "0ai0rxiyni9cxzad3ix50vkxqqmgxfd1vpqzfrmmll1swxpicd8q"; + revision = "2"; + editedCabalFile = "01vqjqpng0wkf8955vrdwd499y9h2mlh4jqbnmzp5598iswgq15c"; libraryHaskellDepends = [ base blaze-builder bytestring containers hashable mmorph mtl text transformers unordered-containers @@ -176092,6 +176696,30 @@ self: { license = lib.licenses.bsd3; }) {}; + "lucid_2_11_1" = callPackage + ({ mkDerivation, base, bifunctors, blaze-builder, bytestring + , containers, criterion, deepseq, hashable, hspec, HUnit, mmorph + , mtl, parsec, text, transformers + }: + mkDerivation { + pname = "lucid"; + version = "2.11.1"; + sha256 = "13krwrvv0w24rnl7pc7qhv18c6030fkxpx7sxkffdm8sr9173xfw"; + libraryHaskellDepends = [ + base blaze-builder bytestring containers hashable mmorph mtl text + transformers + ]; + testHaskellDepends = [ + base bifunctors hspec HUnit mtl parsec text + ]; + benchmarkHaskellDepends = [ + base blaze-builder bytestring criterion deepseq text transformers + ]; + description = "Clear to write, read and edit DSL for HTML"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "lucid-alpine" = callPackage ({ mkDerivation, base, lucid, text }: mkDerivation { @@ -176218,6 +176846,26 @@ self: { license = lib.licenses.bsd3; }) {}; + "lucid2" = callPackage + ({ mkDerivation, base, bifunctors, blaze-builder, bytestring + , containers, hspec, HUnit, mtl, parsec, text, transformers + }: + mkDerivation { + pname = "lucid2"; + version = "0.0.20220509"; + sha256 = "0d38gic3xjqj5in97sbfzjb696011bl47sshzh0377md5j02yc85"; + libraryHaskellDepends = [ + base blaze-builder bytestring containers mtl text transformers + ]; + testHaskellDepends = [ + base bifunctors hspec HUnit mtl parsec text + ]; + description = "Clear to write, read and edit DSL for HTML"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + broken = true; + }) {}; + "lucienne" = callPackage ({ mkDerivation, base, base64-bytestring, blaze-html, bson , bytestring, compact-string-fix, feed, happstack, happstack-server @@ -179778,8 +180426,8 @@ self: { }: mkDerivation { pname = "matterhorn"; - version = "50200.15.0"; - sha256 = "0hn3d1fifzls714a0hsvhbf7wxhg0q60igpr2jcd76yqnzax1mda"; + version = "50200.16.0"; + sha256 = "1hjb408dznls8r6k89jv0zvliv259xj2gzl03f4ypwacihmr3qiw"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -179814,8 +180462,8 @@ self: { }: mkDerivation { pname = "mattermost-api"; - version = "50200.11.0"; - sha256 = "0knrc00377wx8j4ly8d2nxqswybp3782j7qig6mrzlww6nbd68j7"; + version = "50200.12.0"; + sha256 = "12mmpyw1lcmyxh73rgzckww7dd6lxc6m81h2xa9rpd8mxwx0n17n"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -179839,8 +180487,8 @@ self: { }: mkDerivation { pname = "mattermost-api-qc"; - version = "50200.11.0"; - sha256 = "0crz0nc8qbsjyq3fllbj50d01axgwfas76bmr6xnz83sic2s1yw1"; + version = "50200.12.0"; + sha256 = "00fgr80xanrni835n7wgazq6900f040cwnhbsz99936azx125nx4"; libraryHaskellDepends = [ base containers mattermost-api QuickCheck text time ]; @@ -180746,8 +181394,8 @@ self: { pname = "megaparsec"; version = "9.2.0"; sha256 = "1whjn3n14h2q3ja1v7zllzmj28ai7lqwfbif22c08rl00wpwmwhd"; - revision = "1"; - editedCabalFile = "1jv3j59fvykvplj3c653c9rk5wiwg6x0jnljhi2vknzxxmxkjj02"; + revision = "2"; + editedCabalFile = "1f82q0v5iaqnl6f3pjgrwin2lg7w5zykgn6vpds08pjgwfg39va1"; libraryHaskellDepends = [ base bytestring case-insensitive containers deepseq mtl parser-combinators scientific text transformers @@ -180759,6 +181407,27 @@ self: { license = lib.licenses.bsd2; }) {}; + "megaparsec_9_2_1" = callPackage + ({ mkDerivation, base, bytestring, case-insensitive, containers + , criterion, deepseq, mtl, parser-combinators, scientific, text + , transformers, weigh + }: + mkDerivation { + pname = "megaparsec"; + version = "9.2.1"; + sha256 = "1zz92mkwyhvvh8c8nc7cfz8cw2g9374na11k2gb6dbm4pabq69vb"; + libraryHaskellDepends = [ + base bytestring case-insensitive containers deepseq mtl + parser-combinators scientific text transformers + ]; + benchmarkHaskellDepends = [ + base bytestring containers criterion deepseq text weigh + ]; + description = "Monadic parser combinators"; + license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + }) {}; + "megaparsec-tests" = callPackage ({ mkDerivation, base, bytestring, case-insensitive, containers , hspec, hspec-discover, hspec-expectations, hspec-megaparsec @@ -180783,6 +181452,31 @@ self: { license = lib.licenses.bsd2; }) {}; + "megaparsec-tests_9_2_1" = callPackage + ({ mkDerivation, base, bytestring, case-insensitive, containers + , hspec, hspec-discover, hspec-expectations, hspec-megaparsec + , megaparsec, mtl, parser-combinators, QuickCheck, scientific, text + , transformers + }: + mkDerivation { + pname = "megaparsec-tests"; + version = "9.2.1"; + sha256 = "1w9maxfld3by01kl8z0a4v64y2vm5rmsdss6n57mr3j43ng2isr9"; + libraryHaskellDepends = [ + base bytestring containers hspec hspec-expectations + hspec-megaparsec megaparsec mtl QuickCheck text transformers + ]; + testHaskellDepends = [ + base bytestring case-insensitive containers hspec + hspec-expectations hspec-megaparsec megaparsec mtl + parser-combinators QuickCheck scientific text transformers + ]; + testToolDepends = [ hspec-discover ]; + description = "Test utilities and the test suite of Megaparsec"; + license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + }) {}; + "meldable-heap" = callPackage ({ mkDerivation, base }: mkDerivation { @@ -182021,6 +182715,8 @@ self: { pname = "mfsolve"; version = "0.3.2.1"; sha256 = "190dszcnvy5j5bs3n0kya8a9nq0vdhrpgpndjpsxw7x70y3hc9d2"; + revision = "1"; + editedCabalFile = "0938ji6l1bx787lxcw6rzjwskm9vxm615cvx7hxpbwp0hbxrj5sa"; libraryHaskellDepends = [ base hashable mtl mtl-compat unordered-containers ]; @@ -184192,8 +184888,8 @@ self: { pname = "mmorph"; version = "1.2.0"; sha256 = "1022d8mm523dihkf85mqsqxpm9rnyicmv91c8rm4csv7xdc80cv1"; - revision = "1"; - editedCabalFile = "13j6znh33pnnk8yfxnndqiiwal1w6rs2jigs7fgpa26883ff2788"; + revision = "2"; + editedCabalFile = "00jrrmns4w77l06kcpr7798wcbc8abmhlivy12fxajs3x1ycb3hn"; libraryHaskellDepends = [ base mtl transformers transformers-compat ]; @@ -185835,8 +186531,8 @@ self: { pname = "monad-par"; version = "0.3.5"; sha256 = "1a8m99g9x1ivch4vhksk7fdzygbil3d33w8gdqngxbmwdikdafl2"; - revision = "1"; - editedCabalFile = "17l7zjykf5iqjmw1pq4iwls7v9x9d3in94iikxabx43q5l2iccsm"; + revision = "2"; + editedCabalFile = "1q4npp0vrsjpxk7n7rcf3lgqg1sf2qx628ciiw48al9y9xlznsaz"; libraryHaskellDepends = [ abstract-deque abstract-par array base containers deepseq monad-par-extras mtl mwc-random parallel @@ -187037,6 +187733,8 @@ self: { pname = "monoidal-containers"; version = "0.6.2.0"; sha256 = "0rnhlm77zrql42z3zsn3ag279q0vrz2idygc0x4p50q3780670p3"; + revision = "1"; + editedCabalFile = "07l42gkixdpamqqzdwqfcd62yga5cvhbxz5l0jpgs8kgf6prna4p"; libraryHaskellDepends = [ aeson base containers deepseq hashable lens newtype semialign these unordered-containers witherable @@ -187476,15 +188174,14 @@ self: { , haskeline, hex-text, lens, megaparsec, memory, MonadRandom , morley-prelude, mtl, named, optparse-applicative, pairing , parser-combinators, scientific, semigroups, show-type, singletons - , syb, template-haskell, text, text-manipulate, th-lift - , th-lift-instances, th-reify-many, time, timerep - , uncaught-exception, unordered-containers, vector, vinyl - , with-utf8, wl-pprint-text + , syb, template-haskell, text, text-manipulate, th-lift-instances + , th-reify-many, time, timerep, uncaught-exception + , unordered-containers, vector, vinyl, with-utf8, wl-pprint-text }: mkDerivation { pname = "morley"; - version = "1.16.3"; - sha256 = "0s0xkmgymcc8s4izyy094qbyfkvv1f95x8iv4bmmwgkqgjjrlqsp"; + version = "1.16.4"; + sha256 = "17ggz4h5byg81sgji2kmqamynrff27jzdx8g0xvzn6mjdc1frr4f"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -187494,7 +188191,7 @@ self: { galois-field generic-deriving gitrev hex-text lens megaparsec memory MonadRandom morley-prelude mtl named optparse-applicative pairing parser-combinators scientific semigroups show-type - singletons syb template-haskell text text-manipulate th-lift + singletons syb template-haskell text text-manipulate th-lift-instances th-reify-many time timerep uncaught-exception unordered-containers vector vinyl with-utf8 wl-pprint-text ]; @@ -187522,8 +188219,8 @@ self: { }: mkDerivation { pname = "morley-client"; - version = "0.1.1"; - sha256 = "0zwydp374aynavc0hgx3ab0m951pp4mmxi05gp9006882vndh6c7"; + version = "0.1.2"; + sha256 = "00lp0i2fjn0s4l53d71jkady9pwdg1ya2csjwvlb7xbcr5rmgl6i"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -189078,14 +189775,14 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; - "mtl_2_2_2" = callPackage + "mtl_2_3" = callPackage ({ mkDerivation, base, transformers }: mkDerivation { pname = "mtl"; - version = "2.2.2"; - sha256 = "1xmy5741h8cyy0d91ahvqdz2hykkk20l8br7lg1rccnkis5g80w8"; + version = "2.3"; + sha256 = "0krx6bl7xd5n2v9775igv4p8723w6ilshmpljryzfsv4gp74dsy7"; libraryHaskellDepends = [ base transformers ]; - description = "Monad classes, using functional dependencies"; + description = "Monad classes for transformers, using functional dependencies"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; }) {}; @@ -189503,8 +190200,8 @@ self: { }: mkDerivation { pname = "mu-rpc"; - version = "0.5.0.1"; - sha256 = "0r5kbi378iwg5b578dydvv4smy2xqn4y33h015fp5nyphxz83173"; + version = "0.5.0.2"; + sha256 = "1fq0c9jymhmbs9nn4zl1s68diq9dixpxc7i726qazz8vvm836dcr"; libraryHaskellDepends = [ aeson base conduit http-types mtl mu-schema sop-core template-haskell text wai @@ -194973,14 +195670,14 @@ self: { license = lib.licenses.mit; }) {}; - "network-wait_0_1_2_0" = callPackage + "network-wait_0_2_0_0" = callPackage ({ mkDerivation, base, exceptions, network, network-simple, retry , tasty, tasty-hunit }: mkDerivation { pname = "network-wait"; - version = "0.1.2.0"; - sha256 = "1fgcp2didz7zp4jpkc9zap94sbd6ny8nyrx6nwnfai2ssw5rxpfq"; + version = "0.2.0.0"; + sha256 = "1g3fvpf91q31gbmla9r3zwm8n3r3v4n1dmznjhwc7wssfmk2jdh0"; libraryHaskellDepends = [ base exceptions network retry ]; testHaskellDepends = [ base exceptions network network-simple retry tasty tasty-hunit @@ -195784,8 +196481,8 @@ self: { }: mkDerivation { pname = "niv"; - version = "0.2.20"; - sha256 = "1bspaz1a1vy50336d264b6wv7wrfb4a758ghcv6j437lhinjjbf9"; + version = "0.2.21"; + sha256 = "1i4n706nrrd0mk34wrjgg597gsd95xslg8aqrhp3ijh4j4h2b8n2"; isLibrary = true; isExecutable = true; enableSeparateDataOutput = true; @@ -195948,17 +196645,17 @@ self: { "nix-graph" = callPackage ({ mkDerivation, algebraic-graphs, attoparsec, base, containers , hashable, nix-derivation, optparse-applicative, stm, text, ttrie - , unliftio + , unliftio, unordered-containers }: mkDerivation { pname = "nix-graph"; - version = "1.0.1.0"; - sha256 = "0m736px76d2q11m77n9kfw43sh9hqlj1z00ny5xihavxn7jja0xn"; + version = "1.0.2.0"; + sha256 = "0g6kay7j4klgpnd4qq1b0drfc17m4nkip3sks6fn4528r0i95xll"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ algebraic-graphs attoparsec base containers hashable nix-derivation - stm text ttrie unliftio + stm text ttrie unliftio unordered-containers ]; executableHaskellDepends = [ algebraic-graphs base optparse-applicative @@ -197286,10 +197983,8 @@ self: { ({ mkDerivation, base, containers, numeric-prelude, primes }: mkDerivation { pname = "np-extras"; - version = "0.3.1.2"; - sha256 = "1nah4gxagr02nhwbyq2zinx6nj93h40lyw6fv1bv16x8v3d8p69m"; - revision = "1"; - editedCabalFile = "1imcizgbckwcmxwjicads55g0v6abprz3g69b6blkkgmcq5r9x6b"; + version = "0.3.1.3"; + sha256 = "000i8lakkqg9yknqdbyasspmlc8zzpj15dqr8l9kqn5lkfhz1n59"; libraryHaskellDepends = [ base containers numeric-prelude primes ]; description = "NumericPrelude extras"; license = lib.licenses.bsd3; @@ -200162,15 +200857,15 @@ self: { }: mkDerivation { pname = "open-witness"; - version = "0.5"; - sha256 = "1p3dd7s7zzjxp29w4n6yrfvlmcnrllz07lgnf2mjdv9lspynids0"; + version = "0.6"; + sha256 = "0zysnzp7zdmv9d03xnlcqdsnwjrw934gkz6ngahwaqpbx4pp1zmb"; libraryHaskellDepends = [ base constraints hashable random template-haskell transformers witness ]; testHaskellDepends = [ base mtl tasty tasty-hunit witness ]; description = "open witnesses"; - license = lib.licenses.bsd3; + license = lib.licenses.bsd2; hydraPlatforms = lib.platforms.none; broken = true; }) {}; @@ -201282,8 +201977,8 @@ self: { }: mkDerivation { pname = "opentracing"; - version = "0.2.1"; - sha256 = "0p2y996cl5hfw85kdr0majymxccv2d1ka15wbyc2qxgskz3dy9cq"; + version = "0.2.2"; + sha256 = "0d2zxq6y943kwpis9nbbj7cn8amy315bxy56mjj54bkg3jm43jn7"; libraryHaskellDepends = [ aeson async base base64-bytestring bytestring case-insensitive clock containers http-types iproute lens mtl mwc-random network @@ -201298,8 +201993,8 @@ self: { ({ mkDerivation, base, http-client, lens, mtl, opentracing, text }: mkDerivation { pname = "opentracing-http-client"; - version = "0.2.0"; - sha256 = "19mwl69ggyd7zf1dvx5yjzsq5mlw5l94h989hgwc4ryvp8zqwv4n"; + version = "0.2.2"; + sha256 = "03adv17m82imw7bq618zm6x79gq6avvhcz3i0jak4157f3lwdq6b"; libraryHaskellDepends = [ base http-client lens mtl opentracing text ]; @@ -201315,8 +202010,8 @@ self: { }: mkDerivation { pname = "opentracing-jaeger"; - version = "0.2.0"; - sha256 = "0ffcbmg8qzvyhm7vzk2zkk5czli4ndrp18cc328i7600gzv1gr81"; + version = "0.2.2"; + sha256 = "1wy8n4ci3hs2glwahhgzzl6g4dw370ay2dg8bf1af8a27sl3dhjn"; libraryHaskellDepends = [ base bytestring exceptions hashable http-client http-types lens mtl network opentracing pinch QuickCheck safe-exceptions text @@ -201330,8 +202025,8 @@ self: { ({ mkDerivation, base, lens, opentracing, text, wai }: mkDerivation { pname = "opentracing-wai"; - version = "0.2.0"; - sha256 = "178xxgg0rw94gld5jlvix6czsvg66q60h06nj2b1x7rnd0pjryc6"; + version = "0.2.2"; + sha256 = "1yfbh7pp2rp16xm5bqij9f6m0cm23zrd0jsndkngl1mxjkv6l24i"; libraryHaskellDepends = [ base lens opentracing text wai ]; description = "Middleware adding OpenTracing tracing for WAI applications"; license = lib.licenses.asl20; @@ -201341,8 +202036,8 @@ self: { ({ mkDerivation, aeson, base, opentracing, text }: mkDerivation { pname = "opentracing-zipkin-common"; - version = "0.2.0"; - sha256 = "0yngiz8135v844wcx28izwhx18iz06di3dl8bm5xqh47ir43wdw6"; + version = "0.2.2"; + sha256 = "1vridakdz07yfiyr92byd8kab2zc68izpv1j8dh4a0xnks8910wk"; libraryHaskellDepends = [ aeson base opentracing text ]; description = "Zipkin OpenTracing Backend Commons"; license = lib.licenses.asl20; @@ -201356,8 +202051,8 @@ self: { }: mkDerivation { pname = "opentracing-zipkin-v1"; - version = "0.2.0"; - sha256 = "15n9m7affy81fr80zw7l54lch7gr6bvhcqpga797x7rvdxqqjv9j"; + version = "0.2.2"; + sha256 = "0z263yksbcgyfzsb6fj6id3bdsbhb0b92bfjm0myclj8f703hxbj"; libraryHaskellDepends = [ base bytestring exceptions hashable http-client http-types iproute lens opentracing opentracing-zipkin-common pinch QuickCheck text @@ -201374,8 +202069,8 @@ self: { }: mkDerivation { pname = "opentracing-zipkin-v2"; - version = "0.2.0"; - sha256 = "1ykssjhknfyiw02abjpz38zmlw8l03zb8c3y3ic5njmsg23nxfzb"; + version = "0.2.2"; + sha256 = "1hqbr4ifabyg6sr40jw9hqi2xq00wqy8srw9q6hj5qxqnvl39110"; libraryHaskellDepends = [ aeson base base64-bytestring bytestring exceptions http-client http-types lens opentracing opentracing-zipkin-common text @@ -202595,30 +203290,32 @@ self: { license = lib.licenses.bsd3; }) {}; - "ormolu_0_4_0_0" = callPackage - ({ mkDerivation, ansi-terminal, array, base, bytestring, Cabal - , containers, Diff, directory, dlist, exceptions, filepath - , ghc-lib-parser, gitrev, hspec, hspec-discover, mtl - , optparse-applicative, path, path-io, syb, temporary, text + "ormolu_0_5_0_0" = callPackage + ({ mkDerivation, aeson, ansi-terminal, array, base, bytestring + , Cabal, containers, Diff, directory, dlist, exceptions, filepath + , ghc-lib-parser, gitrev, hspec, hspec-discover, hspec-megaparsec + , megaparsec, MemoTrie, mtl, optparse-applicative, path, path-io + , QuickCheck, syb, template-haskell, temporary, text + , th-lift-instances }: mkDerivation { pname = "ormolu"; - version = "0.4.0.0"; - sha256 = "1alibf9ya2igwwjx23pjd0fi2kdaldrkfdpyr2w211irf9agy0j9"; - revision = "2"; - editedCabalFile = "11r9j19xiaf1kpzr1kz41i8ldchf6ygqp0zxrkgmrzvidpvh6q62"; + version = "0.5.0.0"; + sha256 = "1qfhn2vfg9rbddr93kc14dq40j38pas169cizrrdm507z6hnyc1w"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ - ansi-terminal array base bytestring Cabal containers Diff directory - dlist exceptions filepath ghc-lib-parser mtl syb text + aeson ansi-terminal array base bytestring Cabal containers Diff + directory dlist exceptions filepath ghc-lib-parser megaparsec + MemoTrie mtl syb template-haskell text th-lift-instances ]; executableHaskellDepends = [ - base filepath ghc-lib-parser gitrev optparse-applicative text + base containers filepath ghc-lib-parser gitrev optparse-applicative + text ]; testHaskellDepends = [ - base containers directory filepath hspec path path-io temporary - text + base containers directory filepath ghc-lib-parser hspec + hspec-megaparsec megaparsec path path-io QuickCheck temporary text ]; testToolDepends = [ hspec-discover ]; description = "A formatter for Haskell source code"; @@ -204338,9 +205035,9 @@ self: { license = lib.licenses.gpl2Plus; }) {}; - "pandoc-plot_1_5_1" = callPackage + "pandoc-plot_1_5_3" = callPackage ({ mkDerivation, aeson, base, bytestring, containers, criterion - , data-default, directory, filepath, gitrev, hashable, hspec + , data-default, directory, filepath, gitrev, hashable , hspec-expectations, lifted-async, lifted-base, mtl , optparse-applicative, pandoc, pandoc-types, shakespeare, tagsoup , tasty, tasty-hspec, tasty-hunit, template-haskell, text @@ -204348,8 +205045,8 @@ self: { }: mkDerivation { pname = "pandoc-plot"; - version = "1.5.1"; - sha256 = "0n0kazc43j4q39r9fp3400clbnpm0nsghv07pv16lwdjbl67sv91"; + version = "1.5.3"; + sha256 = "0d73b9lnbm041an47sx0cmywga0p51dgbmh1gbfad90w6vi4cxpc"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -204362,8 +205059,8 @@ self: { pandoc pandoc-types template-haskell text typed-process ]; testHaskellDepends = [ - base containers directory filepath hspec hspec-expectations - pandoc-types tasty tasty-hspec tasty-hunit text + base containers directory filepath hspec-expectations pandoc-types + tasty tasty-hspec tasty-hunit text ]; benchmarkHaskellDepends = [ base criterion pandoc-types template-haskell text @@ -204526,8 +205223,8 @@ self: { ({ mkDerivation }: mkDerivation { pname = "pandora"; - version = "0.5.4"; - sha256 = "0mhhjny7djyg8m49klk5kxf4w4nb3hfj3if0qqamyzy3qlpfzpva"; + version = "0.5.5"; + sha256 = "0kk9v6xl3ssfsnk0ng1ar9wm6qw7qln2qcilybldkp8dhy4fvmxq"; description = "A box of patterns and paradigms"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; @@ -205788,12 +206485,12 @@ self: { broken = true; }) {}; - "parsec_3_1_15_0" = callPackage + "parsec_3_1_15_1" = callPackage ({ mkDerivation, base, bytestring, mtl, tasty, tasty-hunit, text }: mkDerivation { pname = "parsec"; - version = "3.1.15.0"; - sha256 = "1v8zs8zv1rk16lag2yqaxfwanjpgnh4gxw1vd70py0n04d20z0lq"; + version = "3.1.15.1"; + sha256 = "1pcqgxzhzlyaxrkgdixsl0jh7jfcg66kwqqf6va0am8q64ar1r5b"; libraryHaskellDepends = [ base bytestring mtl text ]; testHaskellDepends = [ base mtl tasty tasty-hunit ]; description = "Monadic parser combinators"; @@ -206171,6 +206868,28 @@ self: { license = lib.licenses.bsd3; }) {}; + "parsers_0_12_11" = callPackage + ({ mkDerivation, attoparsec, base, base-orphans, binary, bytestring + , charset, containers, mtl, parsec, QuickCheck + , quickcheck-instances, scientific, text, transformers + , unordered-containers + }: + mkDerivation { + pname = "parsers"; + version = "0.12.11"; + sha256 = "068k7fm0s13z0jkkffc149cqcxnzpk1m066lp4ccdfcb41km1zwi"; + libraryHaskellDepends = [ + attoparsec base base-orphans binary charset containers mtl parsec + scientific text transformers unordered-containers + ]; + testHaskellDepends = [ + attoparsec base bytestring parsec QuickCheck quickcheck-instances + ]; + description = "Parsing combinators"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "parsers-megaparsec" = callPackage ({ mkDerivation, base, fail, megaparsec, mtl, parsers, semigroups , text, transformers @@ -207168,8 +207887,8 @@ self: { }: mkDerivation { pname = "patrol"; - version = "0.0.1"; - sha256 = "08rxyx01mamvc3mfyzyqajfj7239sklz30fw4z8rvi2jrgisbpy7"; + version = "0.0.2"; + sha256 = "183cyyj4d6y5k3rnmrycn6xvkqdkylgi8mrc3n67sv0pww1hl3z2"; libraryHaskellDepends = [ aeson base bytestring case-insensitive containers http-client http-types network-uri text time uuid @@ -207201,6 +207920,8 @@ self: { pname = "pattern-arrows"; version = "0.0.2"; sha256 = "13q7bj19hd60rnjfc05wxlyck8llxy11z3mns8kxg197wxrdkhkg"; + revision = "1"; + editedCabalFile = "0vngc3mlyj52fl6cdrbwngpcyzp0gahq2h1sy1ysga62mv76wpc9"; libraryHaskellDepends = [ base mtl ]; description = "Arrows for Pretty Printing"; license = lib.licenses.mit; @@ -211393,8 +212114,8 @@ self: { }: mkDerivation { pname = "pinboard"; - version = "0.10.2.0"; - sha256 = "12hwfgqkn7sym9hig0b0afnzf0an6wcwdw9bc166y3539r3v13ck"; + version = "0.10.3.0"; + sha256 = "0j0isf2539b3fj393766wlrpgdpi39cqjqzw5jxihn7b67cvblyp"; libraryHaskellDepends = [ aeson base bytestring containers http-client http-client-tls http-types monad-logger mtl network profunctors random text time @@ -214118,6 +214839,25 @@ self: { license = lib.licenses.bsd3; }) {}; + "pointed_5_0_4" = callPackage + ({ mkDerivation, base, comonad, containers, data-default-class + , hashable, kan-extensions, semigroupoids, semigroups, stm, tagged + , transformers, transformers-compat, unordered-containers + }: + mkDerivation { + pname = "pointed"; + version = "5.0.4"; + sha256 = "1mv06x2hscs220w4acm5jwg96vi4faky6ir9hnljfry3n2r2xix3"; + libraryHaskellDepends = [ + base comonad containers data-default-class hashable kan-extensions + semigroupoids semigroups stm tagged transformers + transformers-compat unordered-containers + ]; + description = "Pointed and copointed data"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "pointedalternative" = callPackage ({ mkDerivation, base, mtl, semigroups, transformers }: mkDerivation { @@ -214591,8 +215331,8 @@ self: { ({ mkDerivation, base, requirements }: mkDerivation { pname = "poly-rec"; - version = "0.6.0.0"; - sha256 = "1csi81i0j3hk2gsc3c0rx939i67b0mj2pi064giw20yspqqjrp27"; + version = "0.7.0.0"; + sha256 = "0ayaz87l2rgpm4ddc7bidss042xhfcwa3sk7685ypssqvp02k5r0"; libraryHaskellDepends = [ base requirements ]; description = "Polykinded extensible records"; license = lib.licenses.gpl3Only; @@ -214698,8 +215438,6 @@ self: { ]; description = "Polynomials"; license = lib.licenses.publicDomain; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "polynomial-algebra" = callPackage @@ -215857,10 +216595,8 @@ self: { }: mkDerivation { pname = "popkey"; - version = "0.1.0.1"; - sha256 = "1nlbd54q7npxm9hk4f289md6rch0sqnl236iimwsrwllpq6rbxbz"; - revision = "2"; - editedCabalFile = "1wpbwyya9fcdiyqs6lrbcxw7d64vn12kc7n63h2wjxrizjhfs6n6"; + version = "0.1.0.2"; + sha256 = "0ibk4qwcizsqvyvb8lgad5c0szgw7571bi2c54b5r3rrm7vzpx05"; libraryHaskellDepends = [ base bitvec bytestring containers hw-bits hw-prim hw-rankselect hw-rankselect-base store text vector @@ -216869,8 +217605,8 @@ self: { pname = "postgresql-migration"; version = "0.2.1.3"; sha256 = "1qxkan5f328rv3nl31pvhz305k7b4ah98s0j1bc4hcaa5g5d3052"; - revision = "3"; - editedCabalFile = "1c2qdar418pcss64jkdlwqp1lk5bckaqjk46p4ph4gs73jgbrgvc"; + revision = "4"; + editedCabalFile = "1a7a5qmld6qhbvbjn53ld8pw77gashxhmzlfkhnqv7lwwnnxw8dn"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -217408,6 +218144,7 @@ self: { description = "postgresql-tx interfacing for use with squeal-postgresql"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "postgresql-tx-squeal-compat-simple" = callPackage @@ -219092,8 +219829,8 @@ self: { }: mkDerivation { pname = "prettyprinter-combinators"; - version = "0.1.0.1"; - sha256 = "0plnan8dvxl1y9h5vazszhdrf47862jqbhyx1ibldak19bibp367"; + version = "0.1.1"; + sha256 = "1m6338w6cd7fsib00zs8dk16b4mxfa1vswg5bmkzafas1db6qbcg"; libraryHaskellDepends = [ base bimap bytestring containers dlist pretty-show prettyprinter syb template-haskell text unordered-containers vector @@ -220989,23 +221726,23 @@ self: { }) {}; "prolude" = callPackage - ({ mkDerivation, aeson, amazonka, base, bytestring, cassava - , containers, esqueleto, generic-random, lens, mongoDB, mtl - , network-uri, persistent, persistent-mongoDB, QuickCheck - , quickcheck-instances, safe-exceptions, scientific, servant, stm - , swagger2, text, time, uuid, vector, witch + ({ mkDerivation, aeson, base, bytestring, cassava, containers + , esqueleto, generic-random, lens, mongoDB, network-uri, persistent + , persistent-mongoDB, QuickCheck, quickcheck-instances + , safe-exceptions, scientific, servant, stm, swagger2, text, time + , uuid, vector, witch }: mkDerivation { pname = "prolude"; - version = "0.0.0.24"; - sha256 = "0sn5pxv8zylmg5915k08bxfcnmjd5227xlhmh2x9l1aqlqv7adsh"; + version = "0.0.0.25"; + sha256 = "05bd9qsa1p471yh7hy0s29jzp5shng0qdgj4xsannqfv7gzd995q"; libraryHaskellDepends = [ - aeson amazonka base bytestring cassava containers esqueleto - generic-random lens mongoDB mtl network-uri persistent - persistent-mongoDB QuickCheck quickcheck-instances safe-exceptions - scientific servant stm swagger2 text time uuid vector witch + aeson base bytestring cassava containers esqueleto generic-random + lens mongoDB network-uri persistent persistent-mongoDB QuickCheck + quickcheck-instances safe-exceptions scientific servant stm + swagger2 text time uuid vector witch ]; - description = "ITProTV's custom prelude"; + description = "ACI Learning's custom prelude"; license = lib.licenses.mit; hydraPlatforms = lib.platforms.none; }) {}; @@ -223234,6 +223971,28 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; + "purview" = callPackage + ({ mkDerivation, aeson, base, bytestring, hspec, hspec-discover + , QuickCheck, raw-strings-qq, scotty, stm, text, time, wai + , wai-extra, wai-websockets, warp, websockets + }: + mkDerivation { + pname = "purview"; + version = "0.1.0.0"; + sha256 = "1h3nyr3ka38vg9ydraa6yh0xzhh0nasj3d40l0jsfrvj2xpr72di"; + libraryHaskellDepends = [ + aeson base bytestring raw-strings-qq scotty stm text wai wai-extra + wai-websockets warp websockets + ]; + testHaskellDepends = [ + aeson base bytestring hspec QuickCheck raw-strings-qq scotty stm + text time wai wai-extra wai-websockets warp websockets + ]; + testToolDepends = [ hspec-discover ]; + description = "Build server rendered, interactive websites"; + license = lib.licenses.bsd3; + }) {}; + "push-notifications" = callPackage ({ mkDerivation, aeson, base, base16-bytestring, binary, bytestring , casing, conduit, convertible, data-default, HsOpenSSL @@ -225792,8 +226551,8 @@ self: { ({ mkDerivation, base, mtl, template-haskell, th-compat }: mkDerivation { pname = "quotet"; - version = "0.0.1.0"; - sha256 = "1ajxvhh2zl99ddvmvicsjq775l0k3d8lh433v1z6z6i7zra5hg4g"; + version = "0.0.1.1"; + sha256 = "16fwbf9q2ivpi3j7y26lsbqvwwk7vidjn6q9iz4x6sq8adhy45rz"; libraryHaskellDepends = [ base mtl template-haskell th-compat ]; description = "Monad transformer for Quote from template-haskell"; license = lib.licenses.cc0; @@ -226475,6 +227234,29 @@ self: { license = lib.licenses.bsd3; }) {}; + "random_1_2_1_1" = callPackage + ({ mkDerivation, base, bytestring, containers, deepseq, doctest + , mtl, primitive, rdtsc, smallcheck, split, splitmix, stm, tasty + , tasty-bench, tasty-hunit, tasty-inspection-testing + , tasty-smallcheck, time, transformers + }: + mkDerivation { + pname = "random"; + version = "1.2.1.1"; + sha256 = "0xlv1k4sj87akwvj54kq4nrfkzi6qcz1941bf78pnkbaxpvp44iy"; + libraryHaskellDepends = [ base bytestring deepseq mtl splitmix ]; + testHaskellDepends = [ + base bytestring containers doctest smallcheck stm tasty tasty-hunit + tasty-inspection-testing tasty-smallcheck transformers + ]; + benchmarkHaskellDepends = [ + base mtl primitive rdtsc split splitmix tasty-bench time + ]; + description = "Pseudo-random number generation"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "random-access-file" = callPackage ({ mkDerivation, base, bytestring, concurrent-extra, containers , criterion, directory, lrucaching, mwc-random, random, stm, unix @@ -226866,8 +227648,8 @@ self: { ({ mkDerivation, base, doctest, typecheck-plugin-nat-simple }: mkDerivation { pname = "ranged-list"; - version = "0.1.0.1"; - sha256 = "0xjl1fdzazccsk5b96fmsk49fid40w58dbd99cf7550dvwqbnihg"; + version = "0.1.1.1"; + sha256 = "0ky5jzp63565xc9qxq6717c5qbgcisgv9nadjfsqrcxwarp75i6y"; enableSeparateDataOutput = true; libraryHaskellDepends = [ base typecheck-plugin-nat-simple ]; testHaskellDepends = [ base doctest typecheck-plugin-nat-simple ]; @@ -227437,14 +228219,14 @@ self: { broken = true; }) {}; - "rattletrap_11_2_6" = callPackage + "rattletrap_11_2_7" = callPackage ({ mkDerivation, aeson, aeson-pretty, array, base, bytestring , containers, filepath, http-client, http-client-tls, text }: mkDerivation { pname = "rattletrap"; - version = "11.2.6"; - sha256 = "1y8g39vjnn3lywhg389ql0hqrzpgcj0j76wzhrzsh7ymj87vvirk"; + version = "11.2.7"; + sha256 = "19vgqkyxvv9y3yyb42p075nmdm7338f9ln6g0d7sgy9w9zd2vy0d"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -228951,8 +229733,6 @@ self: { ]; description = "Record subtyping and record utilities with generics-sop"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "records-th" = callPackage @@ -233253,8 +234033,8 @@ self: { ({ mkDerivation, base }: mkDerivation { pname = "requirements"; - version = "0.6.0.0"; - sha256 = "1s0s3p0dy07222ks83w3spfw9df33q5lggqv3dw4m9hd5x16a6zi"; + version = "0.7.0.0"; + sha256 = "030vwfasxjdgdadcf5i68i3dc436dj6gi3ql4k8qh09yf8q1mm63"; libraryHaskellDepends = [ base ]; description = "Abstraction to manage user defined Type Errors"; license = lib.licenses.gpl3Only; @@ -233628,6 +234408,23 @@ self: { license = lib.licenses.bsd3; }) {}; + "resourcet_1_2_5" = callPackage + ({ mkDerivation, base, containers, exceptions, hspec, mtl + , primitive, transformers, unliftio-core + }: + mkDerivation { + pname = "resourcet"; + version = "1.2.5"; + sha256 = "0bj98srdlz2yx3nx030m0nzv6yyz1ry50v6bwdff5a6xi256jz7n"; + libraryHaskellDepends = [ + base containers exceptions mtl primitive transformers unliftio-core + ]; + testHaskellDepends = [ base exceptions hspec transformers ]; + description = "Deterministic allocation and freeing of scarce resources"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "resourcet-pool" = callPackage ({ mkDerivation, base, resource-pool, resourcet }: mkDerivation { @@ -236937,6 +237734,19 @@ self: { license = lib.licenses.gpl2Only; }) {}; + "rpm-nvr_0_1_2" = callPackage + ({ mkDerivation, base, extra, filepath, hspec }: + mkDerivation { + pname = "rpm-nvr"; + version = "0.1.2"; + sha256 = "0g4fpay6rry9mnvy6mk793my1fkvpdxx40b5hn6gjr0vr1mvg2yp"; + libraryHaskellDepends = [ base extra filepath ]; + testHaskellDepends = [ base filepath hspec ]; + description = "RPM package name-version-release data types"; + license = lib.licenses.gpl2Only; + hydraPlatforms = lib.platforms.none; + }) {}; + "rpmbuild-order" = callPackage ({ mkDerivation, base, case-insensitive, containers, directory , extra, fgl, filepath, graphviz, hspec, optparse-applicative @@ -242836,6 +243646,31 @@ self: { license = lib.licenses.bsd3; }) {}; + "seocheck" = callPackage + ({ mkDerivation, aeson, base, bytestring, case-insensitive, conduit + , containers, html-conduit, http-client, http-client-tls + , http-types, monad-logger, network-uri, optparse-applicative, path + , path-io, pretty-show, rainbow, stm, text, unliftio, validity + , xml-conduit + }: + mkDerivation { + pname = "seocheck"; + version = "0.1.0.0"; + sha256 = "065hs3y4mkl4l49qa6n7i441aax8y5zyxcpf0zpl9rz6w6llc3g7"; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + aeson base bytestring case-insensitive conduit containers + html-conduit http-client http-client-tls http-types monad-logger + network-uri optparse-applicative path path-io pretty-show rainbow + stm text unliftio validity xml-conduit + ]; + executableHaskellDepends = [ base ]; + testHaskellDepends = [ base ]; + description = "Check for common SEO mistakes on CI"; + license = lib.licenses.mit; + }) {}; + "seonbi" = callPackage ({ mkDerivation, aeson, attoparsec, base, bytestring , bytestring-trie, Cabal, case-insensitive, cases, cassava, cmark @@ -244666,12 +245501,12 @@ self: { }) {}; "servant-jsonrpc" = callPackage - ({ mkDerivation, aeson, base, servant }: + ({ mkDerivation, aeson, base, http-media, servant, text }: mkDerivation { pname = "servant-jsonrpc"; - version = "1.1.0"; - sha256 = "0qy2al8waycarh5973c43bdd9g4a9032waknjsbykhflwglvwmv5"; - libraryHaskellDepends = [ aeson base servant ]; + version = "1.1.1"; + sha256 = "0x5anjs6r7xgd2aqvs3fw4jr9yjz92a7pwa5ydpz63ijw2784j9z"; + libraryHaskellDepends = [ aeson base http-media servant text ]; description = "JSON-RPC messages and endpoints"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; @@ -244686,6 +245521,8 @@ self: { pname = "servant-jsonrpc-client"; version = "1.1.0"; sha256 = "0d18qajwpq6np0a61i5qm1z7iwvqrmgixg627diwr1xh4ws1ij8d"; + revision = "1"; + editedCabalFile = "18pnv3j61ah0dvk4pdkrgfv3862nmg2qn3nx8gica5qlbifdj2wm"; libraryHaskellDepends = [ aeson base servant servant-client-core servant-jsonrpc ]; @@ -244695,15 +245532,15 @@ self: { }) {}; "servant-jsonrpc-server" = callPackage - ({ mkDerivation, aeson, base, containers, mtl, servant - , servant-jsonrpc, servant-server + ({ mkDerivation, aeson, base, containers, servant, servant-jsonrpc + , servant-server }: mkDerivation { pname = "servant-jsonrpc-server"; - version = "2.1.0"; - sha256 = "09byg58qm4r9kbcxzr6jbyg5ziih58p0za8ihq4y8w60mznpb055"; + version = "2.1.1"; + sha256 = "1l26zqmxr89mip8znidj5lljl1kj7lpmhxnj8ranvinn3zgk3vck"; libraryHaskellDepends = [ - aeson base containers mtl servant servant-jsonrpc servant-server + aeson base containers servant servant-jsonrpc servant-server ]; description = "JSON-RPC servant servers"; license = lib.licenses.bsd3; @@ -251316,13 +252153,13 @@ self: { }: mkDerivation { pname = "sketch-frp-copilot"; - version = "1.0.1"; - sha256 = "0hm4bvlj7g9j6k2mc0s426s17nj4w1jpi0v052i2c7b0g7ahdxj8"; + version = "1.0.2"; + sha256 = "10r4j3plg70vawczk9fr388ljjqnjn08apv8s9am754g59fnwrd3"; libraryHaskellDepends = [ base containers copilot copilot-c99 copilot-language mtl optparse-applicative ]; - description = "FRP sketch programming with Copilot"; + description = "Sketch programming with Copilot"; license = lib.licenses.bsd3; hydraPlatforms = lib.platforms.none; }) {}; @@ -256094,8 +256931,8 @@ self: { pname = "species"; version = "0.4.0.1"; sha256 = "0d9vkplg2lrwb34i2ziaa9hc8dnpkjkmwd5b27kigcqfigck6ym2"; - revision = "2"; - editedCabalFile = "03rzc0f11c60h899nxifz4300hlic2nnnya75rx2b5rigy41714r"; + revision = "3"; + editedCabalFile = "06grcm7m92idd3b33gln1j2mcvykam1h3pin9n2ikpvh3v2ahh18"; libraryHaskellDepends = [ base containers multiset-comb np-extras numeric-prelude template-haskell @@ -256516,6 +257353,7 @@ self: { description = "B-Splines, other splines, and NURBS"; license = lib.licenses.publicDomain; hydraPlatforms = lib.platforms.none; + broken = true; }) {}; "splint" = callPackage @@ -256529,6 +257367,18 @@ self: { license = lib.licenses.isc; }) {}; + "splint_1_0_1_5" = callPackage + ({ mkDerivation, base, containers, ghc, hlint, stm }: + mkDerivation { + pname = "splint"; + version = "1.0.1.5"; + sha256 = "1mvkd5jcrivc57g6dw6iwss6682q7wyi6zb2k3nd3vywm1a0c8ql"; + libraryHaskellDepends = [ base containers ghc hlint stm ]; + description = "HLint as a GHC source plugin"; + license = lib.licenses.isc; + hydraPlatforms = lib.platforms.none; + }) {}; + "split" = callPackage ({ mkDerivation, base, QuickCheck }: mkDerivation { @@ -257231,8 +258081,8 @@ self: { "squeal-postgresql" = callPackage ({ mkDerivation, aeson, async, base, binary, binary-parser - , bytestring, bytestring-strict-builder, deepseq, doctest - , exceptions, free-categories, gauge, generic-random, generics-sop + , bytestring, bytestring-strict-builder, deepseq, exceptions + , free-categories, gauge, generic-random, generics-sop, hashable , hedgehog, hspec, mmorph, monad-control, monad-loops, mtl , network-ip, postgresql-binary, postgresql-libpq, profunctors , QuickCheck, quickcheck-instances, records-sop, resource-pool @@ -257241,23 +258091,24 @@ self: { }: mkDerivation { pname = "squeal-postgresql"; - version = "0.8.1.1"; - sha256 = "13q7kfx6wyznqcjl9pxl07p1f2fh6kqmbgvnfa383q1gnhw8zxb9"; + version = "0.9.0.0"; + sha256 = "1gd421zkpd5lg1dl94297dslq43pjl274ahdd947jjvgr6gr193n"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ aeson base binary binary-parser bytestring bytestring-strict-builder deepseq exceptions free-categories - generics-sop mmorph monad-control mtl network-ip postgresql-binary - postgresql-libpq profunctors records-sop resource-pool scientific - text time transformers transformers-base unliftio uuid-types vector + generics-sop hashable mmorph monad-control mtl network-ip + postgresql-binary postgresql-libpq profunctors records-sop + resource-pool scientific text time transformers transformers-base + unliftio uuid-types vector ]; executableHaskellDepends = [ base bytestring generics-sop mtl text transformers vector ]; testHaskellDepends = [ - async base bytestring doctest generics-sop hedgehog hspec mtl - scientific text time vector with-utf8 + async base bytestring generics-sop hedgehog hspec mtl scientific + text time vector with-utf8 ]; benchmarkHaskellDepends = [ base bytestring deepseq gauge generic-random generics-sop @@ -257266,7 +258117,7 @@ self: { ]; description = "Squeal PostgreSQL Library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; + maintainers = with lib.maintainers; [ erictapen ]; }) {}; "squeal-postgresql-ltree" = callPackage @@ -257275,27 +258126,25 @@ self: { }: mkDerivation { pname = "squeal-postgresql-ltree"; - version = "0.1.0.0"; - sha256 = "184y3ar72icxbnqasqvma0ri7s1qczmfsangcvqjjwjf3kpnbb87"; + version = "0.1.0.1"; + sha256 = "1dm5605p5rmh9gxjb84zn78jsqlakp1n9jcgagjmkmng8gnp49l9"; libraryHaskellDepends = [ base bytestring generics-sop mtl postgresql-binary postgresql-libpq squeal-postgresql text ]; description = "LTree extension for Squeal"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "squeal-postgresql-uuid-ossp" = callPackage ({ mkDerivation, base, squeal-postgresql }: mkDerivation { pname = "squeal-postgresql-uuid-ossp"; - version = "0.1.0.0"; - sha256 = "0b2z4rz3r3dikqa6w8rsi36gw6wvvj7b8rmh2drpp6lykykm8n2s"; + version = "0.1.0.1"; + sha256 = "15n888ja9r7x80m3skciqagjl9gvs3w2103lv3m0isz3bz3pgdvg"; libraryHaskellDepends = [ base squeal-postgresql ]; description = "UUID OSSP extension for Squeal"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "squeather" = callPackage @@ -259250,6 +260099,33 @@ self: { license = lib.licenses.bsd2; }) {}; + "statistics_0_16_1_0" = callPackage + ({ mkDerivation, aeson, async, base, binary, data-default-class + , deepseq, dense-linear-algebra, erf, ieee754, math-functions + , mwc-random, parallel, primitive, QuickCheck, random, tasty + , tasty-expected-failure, tasty-hunit, tasty-quickcheck, vector + , vector-algorithms, vector-binary-instances, vector-th-unbox + }: + mkDerivation { + pname = "statistics"; + version = "0.16.1.0"; + sha256 = "000rkq5niabbdq0adca81rd19pgazvbnpww8cakhxdh5frf2lj78"; + libraryHaskellDepends = [ + aeson async base binary data-default-class deepseq + dense-linear-algebra math-functions mwc-random parallel primitive + random vector vector-algorithms vector-binary-instances + vector-th-unbox + ]; + testHaskellDepends = [ + aeson base binary dense-linear-algebra erf ieee754 math-functions + primitive QuickCheck tasty tasty-expected-failure tasty-hunit + tasty-quickcheck vector vector-algorithms + ]; + description = "A library of statistical types, data, and functions"; + license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + }) {}; + "statistics-dirichlet" = callPackage ({ mkDerivation, base, deepseq, hmatrix-special , nonlinear-optimization, vector @@ -261894,6 +262770,25 @@ self: { license = lib.licenses.mit; }) {}; + "strict-list_0_1_7" = callPackage + ({ mkDerivation, base, deepseq, hashable, QuickCheck + , quickcheck-instances, rerebase, semigroupoids, tasty, tasty-hunit + , tasty-quickcheck + }: + mkDerivation { + pname = "strict-list"; + version = "0.1.7"; + sha256 = "0dhfnb5zvwnnbsy0c9lyymfq223zw9jgwv3wn1rq5xp1np68mkbh"; + libraryHaskellDepends = [ base deepseq hashable semigroupoids ]; + testHaskellDepends = [ + QuickCheck quickcheck-instances rerebase tasty tasty-hunit + tasty-quickcheck + ]; + description = "Strict linked list"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "strict-optics" = callPackage ({ mkDerivation, base, optics-core, strict }: mkDerivation { @@ -264306,18 +265201,19 @@ self: { }) {}; "svgsym" = callPackage - ({ mkDerivation, base, bytestring, containers, directory, filepath - , filepattern, optparse-applicative, regex-tdfa, xml + ({ mkDerivation, array, base, bytestring, containers, directory + , filepath, filepattern, optparse-applicative, regex-base + , regex-tdfa, xml }: mkDerivation { pname = "svgsym"; - version = "0.1.0.0"; - sha256 = "0wiy03v3sdw8mzn3kibgjzjp6m50nnc31nld9zvr86fcrsl7bdgl"; + version = "0.1.1.0"; + sha256 = "014vand8zag2b9ll2g6xn0s91bav7x2v2l4xdvidc0rs6m8s5fx5"; isLibrary = false; isExecutable = true; executableHaskellDepends = [ - base bytestring containers directory filepath filepattern - optparse-applicative regex-tdfa xml + array base bytestring containers directory filepath filepattern + optparse-applicative regex-base regex-tdfa xml ]; description = "A tool to prune unused symbols from icon SVG files"; license = lib.licenses.gpl3Plus; @@ -264877,8 +265773,8 @@ self: { }: mkDerivation { pname = "sydtest-hedgehog"; - version = "0.2.0.0"; - sha256 = "084nqzl1i5phy0hwdgcx0dvlajr8g1iva73f3j9y9rsgl08wh727"; + version = "0.3.0.0"; + sha256 = "17b80iar2zm61h27jv6fnzr8h6whi3k7a79ij1n71hhrm53b0420"; libraryHaskellDepends = [ base containers hedgehog stm sydtest ]; testHaskellDepends = [ base hedgehog sydtest ]; testToolDepends = [ sydtest-discover ]; @@ -267178,6 +268074,23 @@ self: { license = lib.licenses.bsd3; }) {}; + "tagged-transformer_0_8_2" = callPackage + ({ mkDerivation, base, comonad, contravariant, distributive + , exceptions, mtl, reflection, semigroupoids, tagged + }: + mkDerivation { + pname = "tagged-transformer"; + version = "0.8.2"; + sha256 = "10wlwqxzm1xdyzxl6xyfsrb40zmvh7g0y3w0a69b1lw2rp6v4vyy"; + libraryHaskellDepends = [ + base comonad contravariant distributive exceptions mtl reflection + semigroupoids tagged + ]; + description = "Monad transformer carrying an extra phantom type tag"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + }) {}; + "tagging" = callPackage ({ mkDerivation, base, bytestring, pcre-light }: mkDerivation { @@ -267900,10 +268813,25 @@ self: { pname = "tardis"; version = "0.4.3.0"; sha256 = "1ffmpdvnmr1s3rh3kpqqscsbz2rq4s7k8nfc93zw9m4mchg37waw"; + revision = "1"; + editedCabalFile = "1krk42qgdg10s6pxp805zv7z4c7mlhbhk15l07v9i750im1k73v3"; + libraryHaskellDepends = [ base mmorph mtl ]; + testHaskellDepends = [ base ]; + description = "Bidirectional state monad transformer"; + license = lib.licenses.bsd3; + }) {}; + + "tardis_0_4_4_0" = callPackage + ({ mkDerivation, base, mmorph, mtl }: + mkDerivation { + pname = "tardis"; + version = "0.4.4.0"; + sha256 = "0frm9kffdsia22rwyr8295n9xwhca1d6w04yz4l4cfjav6bgczfs"; libraryHaskellDepends = [ base mmorph mtl ]; testHaskellDepends = [ base ]; description = "Bidirectional state monad transformer"; license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; }) {}; "target" = callPackage @@ -268102,8 +269030,8 @@ self: { pname = "tasty"; version = "1.4.2.1"; sha256 = "0ki3gdzfsqvk9mwzzvgj18ck1sbkwac06gcc128wpwh9g8c4bzqr"; - revision = "1"; - editedCabalFile = "1fm1yx9dqikspw3a6ygnwj61vx1zwgjxm84zpkydbhcf6hgab5sg"; + revision = "2"; + editedCabalFile = "134sp1sjyx5hh1vwraxdfs98yx9gf19zp9kpfzqvvajfgy9i37jv"; libraryHaskellDepends = [ ansi-terminal base clock containers mtl optparse-applicative stm tagged unbounded-delays unix wcwidth @@ -268112,6 +269040,24 @@ self: { license = lib.licenses.mit; }) {}; + "tasty_1_4_2_3" = callPackage + ({ mkDerivation, ansi-terminal, base, clock, containers + , optparse-applicative, stm, tagged, transformers, unbounded-delays + , unix, wcwidth + }: + mkDerivation { + pname = "tasty"; + version = "1.4.2.3"; + sha256 = "1inhrayiqhd3k14b9cnjcv5kdxb95sgk8b0ibbf37z4dlalsf569"; + libraryHaskellDepends = [ + ansi-terminal base clock containers optparse-applicative stm tagged + transformers unbounded-delays unix wcwidth + ]; + description = "Modern and extensible testing framework"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "tasty-ant-xml" = callPackage ({ mkDerivation, base, containers, directory, filepath , generic-deriving, ghc-prim, mtl, stm, tagged, tasty, transformers @@ -268800,6 +269746,8 @@ self: { pname = "tasty-silver"; version = "3.3.1"; sha256 = "1pd83mzx0iv3f396m09rxmgcpcfaya0a9818dl3h4vgw0hnqkmav"; + revision = "1"; + editedCabalFile = "1gsjspgy9li9lsk7sqikm44mr3cjsxkrhvql6rabk5x9nb5ajrnr"; libraryHaskellDepends = [ ansi-terminal async base bytestring containers deepseq directory filepath mtl optparse-applicative process process-extras regex-tdfa @@ -268813,6 +269761,30 @@ self: { license = lib.licenses.mit; }) {}; + "tasty-silver_3_3_1_1" = callPackage + ({ mkDerivation, ansi-terminal, async, base, bytestring, containers + , deepseq, directory, filepath, mtl, optparse-applicative, process + , process-extras, regex-tdfa, silently, stm, tagged, tasty + , tasty-hunit, temporary, text, transformers + }: + mkDerivation { + pname = "tasty-silver"; + version = "3.3.1.1"; + sha256 = "13j0zs0ciijv9q2nncna1gbgsgw2g7xc228hzmqic1750n3ybz9m"; + libraryHaskellDepends = [ + ansi-terminal async base bytestring containers deepseq directory + filepath mtl optparse-applicative process process-extras regex-tdfa + silently stm tagged tasty temporary text transformers + ]; + testHaskellDepends = [ + base directory filepath process silently tasty tasty-hunit + temporary transformers + ]; + description = "A fancy test runner, including support for golden tests"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "tasty-smallcheck" = callPackage ({ mkDerivation, base, optparse-applicative, smallcheck, tagged , tasty @@ -269605,7 +270577,7 @@ self: { license = lib.licenses.bsd3; }) {}; - "telegram-bot-simple_0_5" = callPackage + "telegram-bot-simple_0_5_2" = callPackage ({ mkDerivation, aeson, aeson-pretty, base, bytestring, cron , filepath, hashable, http-api-data, http-client, http-client-tls , monad-control, mtl, pretty-show, profunctors, servant @@ -269615,10 +270587,8 @@ self: { }: mkDerivation { pname = "telegram-bot-simple"; - version = "0.5"; - sha256 = "0mzzq7lfl56h1i9dr617h5vcv47j2nsf77pkq18s8wk5zrc67r2w"; - revision = "1"; - editedCabalFile = "0nz2g3jfb3l66ixrxlz257pmg2qbg7l6wsi0q38iv8fl4483md2s"; + version = "0.5.2"; + sha256 = "1fkpgdyrfa1ckaljmchha89mpqrkdwwj0pvcwvn38jg3y523n6k9"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -273013,6 +273983,8 @@ self: { pname = "th-compat"; version = "0.1.3"; sha256 = "1il1hs5yjfkb417c224pw1vrh4anyprasfwmjbd4fkviyv55jl3b"; + revision = "1"; + editedCabalFile = "1ax5yz41sfy9klif7j3ihahvdi08alb56l4y9nr45vbc9kvijn7n"; libraryHaskellDepends = [ base template-haskell ]; testHaskellDepends = [ base base-compat hspec mtl template-haskell @@ -274078,8 +275050,8 @@ self: { }: mkDerivation { pname = "threadscope"; - version = "0.2.14"; - sha256 = "0xcj8v6kyk8ss2sg6f32gx84vgx36hfaqb5p3sy3d4vkxan4xwcy"; + version = "0.2.14.1"; + sha256 = "0hfn90299mp18p2bjj2bgfi1pk3ndxz4nv2ac6z52kvh00sr9drq"; isLibrary = false; isExecutable = true; enableSeparateDataOutput = true; @@ -274090,8 +275062,6 @@ self: { ]; description = "A graphical tool for profiling parallel Haskell programs"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "threefish" = callPackage @@ -274803,14 +275773,14 @@ self: { hydraPlatforms = lib.platforms.none; }) {}; - "time_1_12_1" = callPackage + "time_1_12_2" = callPackage ({ mkDerivation, base, criterion, deepseq, QuickCheck, random , tasty, tasty-hunit, tasty-quickcheck }: mkDerivation { pname = "time"; - version = "1.12.1"; - sha256 = "02fnl9jr028gn2vkky1mfvrqqzzy123b1gic1yamn8cnq7xgzsn0"; + version = "1.12.2"; + sha256 = "07mgxdqhn72i34hbfj61k7lfk8fh5in4lyq013727s1hl93v186v"; libraryHaskellDepends = [ base deepseq ]; testHaskellDepends = [ base deepseq QuickCheck random tasty tasty-hunit tasty-quickcheck @@ -275503,6 +276473,8 @@ self: { pname = "timers-tick"; version = "0.5.0.1"; sha256 = "1kv646l77bzjgs2v39axsi405zvapwks1vj4ff341r5agpwrfqlc"; + revision = "1"; + editedCabalFile = "1qsmzkm0k14z06czpbjgkbzb1liws3iass0rwsi5wp5i62jkhczs"; libraryHaskellDepends = [ base ]; testHaskellDepends = [ base hspec QuickCheck ]; description = "tick based timers"; @@ -280402,6 +281374,31 @@ self: { maintainers = with lib.maintainers; [ Gabriel439 ]; }) {}; + "turtle_1_5_25" = callPackage + ({ mkDerivation, ansi-wl-pprint, async, base, bytestring, clock + , containers, directory, doctest, exceptions, foldl, hostname + , managed, optional-args, optparse-applicative, process, stm + , streaming-commons, system-fileio, system-filepath, tasty-bench + , temporary, text, time, transformers, unix, unix-compat + }: + mkDerivation { + pname = "turtle"; + version = "1.5.25"; + sha256 = "1hh2rbwk3m4iklk67f1l1a8shsng9qzs9132j6lpag7cgqkrmqdk"; + libraryHaskellDepends = [ + ansi-wl-pprint async base bytestring clock containers directory + exceptions foldl hostname managed optional-args + optparse-applicative process stm streaming-commons system-fileio + system-filepath temporary text time transformers unix unix-compat + ]; + testHaskellDepends = [ base doctest system-filepath temporary ]; + benchmarkHaskellDepends = [ base tasty-bench text ]; + description = "Shell programming, Haskell-style"; + license = lib.licenses.bsd3; + hydraPlatforms = lib.platforms.none; + maintainers = with lib.maintainers; [ Gabriel439 ]; + }) {}; + "turtle-options" = callPackage ({ mkDerivation, base, HUnit, optional-args, parsec, text, turtle }: @@ -282055,6 +283052,8 @@ self: { pname = "typed-process"; version = "0.2.8.0"; sha256 = "1af0g34sws7fppziv7firr9r2wrnly4y6sr9nyqa8bvbbmadly45"; + revision = "1"; + editedCabalFile = "1m017nqbaqishii32gwhxa1849h0qnn06w7k1rn8c9d8w71m4vqm"; libraryHaskellDepends = [ async base bytestring process stm transformers unliftio-core ]; @@ -289762,7 +290761,6 @@ self: { ]; description = "Convert plain records to vinyl (and vice versa), generically"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; }) {}; "vinyl-gl" = callPackage @@ -291020,7 +292018,7 @@ self: { license = lib.licenses.mit; }) {}; - "wai-extra_3_1_11" = callPackage + "wai-extra_3_1_12" = callPackage ({ mkDerivation, aeson, ansi-terminal, base, base64-bytestring , bytestring, call-stack, case-insensitive, containers, cookie , data-default-class, directory, fast-logger, hspec, http-types @@ -291030,8 +292028,8 @@ self: { }: mkDerivation { pname = "wai-extra"; - version = "3.1.11"; - sha256 = "0z9hl0a8vh6049m4pvnqjm7fibp60qc3jrcz0vpqbscncr59l7h5"; + version = "3.1.12"; + sha256 = "1i6gh02sprdbkwg92pzm6rwxcm3k8286vazziwjq05xln3vckd1n"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -293324,8 +294322,8 @@ self: { }: mkDerivation { pname = "web-inv-route"; - version = "0.1.3.1"; - sha256 = "1l10rgrhcqld8znw6akxjlsm1h8z76l9yxa4yik11lk2l0g9anb2"; + version = "0.1.3.2"; + sha256 = "0gmbj6c6c8gqz9xfxv0d4134d7c2wfla3zg3bgqvvzsqjjmrg81v"; libraryHaskellDepends = [ base bytestring case-insensitive containers happstack-server hashable http-types invertible network-uri snap-core text @@ -295736,6 +296734,18 @@ self: { license = lib.licenses.bsd3; }) {}; + "witness_0_6" = callPackage + ({ mkDerivation, base, constraints, countable }: + mkDerivation { + pname = "witness"; + version = "0.6"; + sha256 = "1y8scf6a061s8gnx38sfwn88ramakjr0h54qwlwcjrjpf0y6024l"; + libraryHaskellDepends = [ base constraints countable ]; + description = "values that witness types"; + license = lib.licenses.bsd2; + hydraPlatforms = lib.platforms.none; + }) {}; + "witty" = callPackage ({ mkDerivation, base, bytestring, network, unix }: mkDerivation { @@ -299343,8 +300353,8 @@ self: { }: mkDerivation { pname = "xmobar"; - version = "0.42"; - sha256 = "16vnj9a5jnc2ddn158xwz7mh6zdicjvwg3j93bpk5ny3g5ns1x2k"; + version = "0.43"; + sha256 = "0r0ba8xv3f0jy4ycmhxhpd146bqzf7v97svxg6r3w9agva3l8454"; configureFlags = [ "-fwith_alsa" "-fwith_conduit" "-fwith_datezone" "-fwith_dbus" "-fwith_inotify" "-fwith_iwlib" "-fwith_mpd" "-fwith_mpris" @@ -303495,6 +304505,34 @@ self: { license = lib.licenses.mit; }) {}; + "yesod-test_1_6_14" = callPackage + ({ mkDerivation, aeson, attoparsec, base, blaze-builder, blaze-html + , blaze-markup, bytestring, case-insensitive, conduit, containers + , cookie, hspec, hspec-core, html-conduit, http-types, HUnit + , memory, mtl, network, pretty-show, text, time, transformers + , unliftio, unliftio-core, wai, wai-extra, xml-conduit, xml-types + , yesod-core, yesod-form + }: + mkDerivation { + pname = "yesod-test"; + version = "1.6.14"; + sha256 = "1sb50n9x5xsisad6czxx1gazrjak9hj6mcpv3q147yhpgfnpay9k"; + libraryHaskellDepends = [ + aeson attoparsec base blaze-builder blaze-html blaze-markup + bytestring case-insensitive conduit containers cookie hspec-core + html-conduit http-types HUnit memory mtl network pretty-show text + time transformers wai wai-extra xml-conduit xml-types yesod-core + ]; + testHaskellDepends = [ + base bytestring containers cookie hspec html-conduit http-types + HUnit text unliftio unliftio-core wai wai-extra xml-conduit + yesod-core yesod-form + ]; + description = "integration testing for WAI/Yesod Applications"; + license = lib.licenses.mit; + hydraPlatforms = lib.platforms.none; + }) {}; + "yesod-test-json" = callPackage ({ mkDerivation, aeson, base, bytestring, conduit, hspec , http-types, HUnit, text, transformers, wai, wai-test @@ -304940,8 +305978,8 @@ self: { }: mkDerivation { pname = "zephyr-copilot"; - version = "1.0.1"; - sha256 = "0d489krxzj30gl8j8idwfi10k82w0p4kr30f0h78qvl9ikzinhvk"; + version = "1.0.2"; + sha256 = "01dvqzh97bw423kwhmgdr8l913p4miq69frv3nkjs889ps16faz0"; libraryHaskellDepends = [ base containers copilot copilot-c99 copilot-language directory filepath mtl optparse-applicative sketch-frp-copilot temporary diff --git a/pkgs/development/interpreters/bats/default.nix b/pkgs/development/interpreters/bats/default.nix index da12e7a3e65..ef1a110f8e7 100644 --- a/pkgs/development/interpreters/bats/default.nix +++ b/pkgs/development/interpreters/bats/default.nix @@ -6,19 +6,25 @@ , coreutils , gnugrep , ncurses +, findutils +, hostname +, parallel +, flock +, ps +, bats , lsof , doInstallCheck ? true }: resholve.mkDerivation rec { pname = "bats"; - version = "1.6.0"; + version = "1.7.0"; src = fetchFromGitHub { owner = "bats-core"; repo = "bats-core"; rev = "v${version}"; - sha256 = "sha256-s+SAqX70WeTz6s5ObXYFBVPVUEqvD1d7AX2sGHkjVQ4="; + sha256 = "sha256-joNne/dDVCNtzdTQ64rK8GimT+DOWUa7f410hml2s8Q="; }; patchPhase = '' @@ -31,32 +37,99 @@ resholve.mkDerivation rec { solutions = { bats = { - scripts = [ "bin/bats" ]; + scripts = [ + "bin/bats" + "libexec/bats-core/*" + "lib/bats-core/*" + ]; interpreter = "${bash}/bin/bash"; - inputs = [ bash coreutils gnugrep ]; + inputs = [ + bash + coreutils + gnugrep + ncurses + findutils + hostname + parallel + flock + "lib/bats-core" + "libexec/bats-core" + ]; fake = { - external = [ "greadlink" ]; + external = [ + "greadlink" + "shlock" + ]; }; fix = { "$BATS_ROOT" = [ "${placeholder "out"}" ]; + "$BATS_LIBEXEC" = [ "${placeholder "out"}/libexec/bats-core" ]; }; keep = { "${placeholder "out"}/libexec/bats-core/bats" = true; + source = [ + "${placeholder "out"}/lib/bats-core/validator.bash" + "${placeholder "out"}/lib/bats-core/preprocessing.bash" + "$BATS_TEST_SOURCE" + "${placeholder "out"}/lib/bats-core/tracing.bash" + "${placeholder "out"}/lib/bats-core/test_functions.bash" + "$library_load_path" + "${placeholder "out"}/lib/bats-core/common.bash" + "${placeholder "out"}/lib/bats-core/semaphore.bash" + "${placeholder "out"}/lib/bats-core/formatter.bash" + "${placeholder "out"}/lib/bats-core/warnings.bash" + "$setup_suite_file" # via cli arg + ]; + "$report_formatter" = true; + "$formatter" = true; + "$pre_command" = true; + "$BATS_TEST_NAME" = true; + "${placeholder "out"}/libexec/bats-core/bats-exec-test" = true; }; + execer = [ + /* + both blatant lies for expedience; these can certainly exec args + they may be safe here, because they may always run things that + are ultimately in libexec? + TODO: handle parallel and flock in binlore/resholve + */ + "cannot:${parallel}/bin/parallel" + "cannot:${flock}/bin/flock" + + "cannot:libexec/bats-core/bats-preprocess" + + # these do exec, but other internal files + "cannot:libexec/bats-core/bats-exec-file" + "cannot:libexec/bats-core/bats-exec-suite" + ]; }; }; - inherit doInstallCheck; - installCheckInputs = [ ncurses ] ++ lib.optionals stdenv.isDarwin [ lsof ]; - installCheckPhase = '' - # TODO: cut if https://github.com/bats-core/bats-core/issues/418 allows - sed -i '/test works even if PATH is reset/a skip' test/bats.bats + passthru.tests.upstream = bats.unresholved.overrideAttrs (old: { + name = "${bats.name}-tests"; + dontInstall = true; # just need the build directory + installCheckInputs = [ + ncurses + parallel # skips some tests if it can't detect + flock # skips some tests if it can't detect + ps + ] ++ lib.optionals stdenv.isDarwin [ lsof ]; + inherit doInstallCheck; + installCheckPhase = '' + # TODO: cut if https://github.com/bats-core/bats-core/issues/418 allows + sed -i '/test works even if PATH is reset/a skip "disabled for nix build"' test/bats.bats - # test generates file with absolute shebang dynamically - substituteInPlace test/install.bats --replace \ - "/usr/bin/env bash" "${bash}/bin/bash" - bin/bats test - ''; + # skip tests that assume bats `install.sh` will be in BATS_ROOT + rm test/root.bats + + # test generates file with absolute shebang dynamically + substituteInPlace test/install.bats --replace \ + "/usr/bin/env bash" "${bash}/bin/bash" + + ${bats}/bin/bats test + touch $out + ''; + }); meta = with lib; { homepage = "https://github.com/bats-core/bats-core"; diff --git a/pkgs/development/interpreters/dart/default.nix b/pkgs/development/interpreters/dart/default.nix index 0891bfd2d8f..bf5ab2dc98f 100644 --- a/pkgs/development/interpreters/dart/default.nix +++ b/pkgs/development/interpreters/dart/default.nix @@ -2,7 +2,7 @@ , lib , fetchurl , unzip -, version ? "2.15.1" +, version ? "2.17.0" , sources ? let base = "https://storage.googleapis.com/dart-archive/channels"; x86_64 = "x64"; @@ -10,28 +10,28 @@ aarch64 = "arm64"; # Make sure that if the user overrides version parameter they're # also need to override sources, to avoid mistakes - version = "2.15.1"; + version = "2.17.0"; in { "${version}-aarch64-darwin" = fetchurl { url = "${base}/stable/release/${version}/sdk/dartsdk-macos-${aarch64}-release.zip"; - sha256 = "sha256-DDE4DpA2m8wKkUZuQDn4NpXVvtaJ6sIHeKNjk3RbpYE="; + sha256 = "sha256-WXf0SdSEHMaJRfVFgKzb9SY4LBjf1xO5Oki/dzKMEMY="; }; "${version}-x86_64-darwin" = fetchurl { url = "${base}/stable/release/${version}/sdk/dartsdk-macos-${x86_64}-release.zip"; - sha256 = "sha256-s6bkwh2m5KdRr/WxWXwItO9YaDpp/HI3xjnS2UHmN+I="; + sha256 = "sha256-PwaxUQHIUhRWCOy3IVdGtRyP9LtscqoUJPOZfevN7xs="; }; "${version}-x86_64-linux" = fetchurl { url = "${base}/stable/release/${version}/sdk/dartsdk-linux-${x86_64}-release.zip"; - sha256 = "sha256-D0XcqlO0CQtpsne4heqaTLOkFYnJEZET4bl4rVXOM18="; + sha256 = "sha256-V7j9lk5HyB1GeuuVsJmmcKt+j1ShzXTUW80f3HeRPYY="; }; "${version}-i686-linux" = fetchurl { url = "${base}/stable/release/${version}/sdk/dartsdk-linux-${i686}-release.zip"; - sha256 = "sha256-SRq5TtxS+bwCqVxa0U2Zhn8J1Wtm4Onq+3uQS+951sw="; + sha256 = "sha256-YWxFwbcGvssOSL4S5O4jqLzxdUHvbVd9i4cLNyFn/cs="; }; "${version}-aarch64-linux" = fetchurl { url = "${base}/stable/release/${version}/sdk/dartsdk-linux-${aarch64}-release.zip"; - sha256 = "sha256-iDbClCNDUsxT6K6koc4EQuu7dppTbOfzCVedpQIKI5U="; + sha256 = "sha256-BaHbD9hFhYd9YYCFg0bXxTx++JQzZn2zuF8/Ll+nA2s="; }; } }: diff --git a/pkgs/development/interpreters/erlang/R25.nix b/pkgs/development/interpreters/erlang/R25.nix new file mode 100644 index 00000000000..f11633d3d1c --- /dev/null +++ b/pkgs/development/interpreters/erlang/R25.nix @@ -0,0 +1,8 @@ +{ mkDerivation }: + +# How to obtain `sha256`: +# nix-prefetch-url --unpack https://github.com/erlang/otp/archive/OTP-${version}.tar.gz +mkDerivation { + version = "25.0"; + sha256 = "1nf72yiirdpxcs8m10xc04ryghxxc73x954x38m5a6fhv2hfhp2n"; +} diff --git a/pkgs/development/interpreters/j/default.nix b/pkgs/development/interpreters/j/default.nix index e41d71ef960..7f35dcfc635 100644 --- a/pkgs/development/interpreters/j/default.nix +++ b/pkgs/development/interpreters/j/default.nix @@ -1,82 +1,107 @@ -{ lib, stdenv, fetchFromGitHub, readline, libedit, bc +{ lib +, stdenv +, fetchFromGitHub +, bc +, libedit +, readline , avxSupport ? stdenv.hostPlatform.avxSupport }: stdenv.mkDerivation rec { pname = "j"; - version = "902"; - jtype = "release-b"; + version = "904-beta-c"; + src = fetchFromGitHub { + name = "${pname}-source"; owner = "jsoftware"; repo = "jsource"; - rev = "j${version}-${jtype}"; - sha256 = "0j67vgikqflwjqacsdicasvyv1k54s2c8vjgwmf0ix7l41p4xqz0"; - name = "jsource"; + rev = "j${version}"; + hash = "sha256-MzEO/saHEBl1JwVlFC6P2UKm9RZnV7KVrNd9h4cPV/w="; }; - buildInputs = [ readline libedit bc ]; - bits = if stdenv.is64bit then "64" else "32"; - platform = - if (stdenv.isAarch32 || stdenv.isAarch64) then "raspberry" else - if stdenv.isLinux then "linux" else - if stdenv.isDarwin then "darwin" else - "unknown"; - variant = if stdenv.isx86_64 && avxSupport then "avx" else ""; - - j64x="j${bits}${variant}"; - - doCheck = true; - - # Causes build failure due to warning - hardeningDisable = lib.optional stdenv.cc.isClang "strictoverflow"; - - # Causes build failure due to warning - # https://github.com/jsoftware/jsource/issues/16 - NIX_CFLAGS_COMPILE = "-Wno-error=return-local-addr"; + buildInputs = [ + readline + libedit + bc + ]; + + dontConfigure = true; + + # emulating build_all.sh configuration variables + jplatform = + if stdenv.isDarwin then "darwin" + else if (stdenv.isAarch32 || stdenv.isAarch64) then "raspberry" + else if stdenv.isLinux then "linux" + else "unsupported"; + + j64x = + if stdenv.is32bit then "j32" + else if stdenv.isx86_64 then + if (stdenv.isLinux && avxSupport) then "j64avx" else "j64" + else if stdenv.isAarch64 then + if stdenv.isDarwin then "j64arm" else "j64" + else "unsupported"; buildPhase = '' - export SOURCE_DIR=$(pwd) - export HOME=$TMPDIR - export JLIB=$SOURCE_DIR/jlibrary + runHook preBuild - echo $OUT_DIR + export SRCDIR=$(pwd) + export HOME=$TMPDIR + export JLIB=$SRCDIR/jlibrary + export CC=cc cd make2 patchShebangs . - sed -i $JLIB/bin/profile.ijs -e "s@'/usr/share/j/.*'@'$out/share/j'@;" - j64x="${j64x}" ./build_all.sh + j64x="${j64x}" jplatform="${jplatform}" ./build_all.sh - cp $SOURCE_DIR/bin/${platform}/j${bits}*/* "$JLIB/bin" + cp -v $SRCDIR/bin/${jplatform}/${j64x}/* "$JLIB/bin" + + runHook postBuild ''; + doCheck = true; + checkPhase = '' + runHook preCheck - echo 'i. 5' | $JLIB/bin/jconsole | fgrep "0 1 2 3 4" + echo "Smoke test" + echo 'i. 10' | $JLIB/bin/jconsole | fgrep "0 1 2 3 4 5 6 7 8 9" # Now run the real tests - cd $SOURCE_DIR/test + pushd $SRCDIR/test for f in *.ijs do - echo $f + echo -n "test $f: " $JLIB/bin/jconsole < $f > /dev/null || echo FAIL && echo PASS done + popd + + runHook postCheck ''; installPhase = '' - mkdir -p "$out" + runHook preInstall - mkdir -p "$out/share/j" + mkdir -p "$out/share/j/" cp -r $JLIB/{addons,system} "$out/share/j" cp -r $JLIB/bin "$out" + + runHook postInstall ''; meta = with lib; { + homepage = "http://jsoftware.com/"; description = "J programming language, an ASCII-based APL successor"; - maintainers = with maintainers; [ raskin synthetica ]; - platforms = with platforms; linux ++ darwin; + longDescription = '' + J is a high-level, general-purpose programming language that is + particularly suited to the mathematical, statistical, and logical analysis + of data. It is a powerful tool for developing algorithms and exploring + problems that are not already well understood. + ''; license = licenses.gpl3Plus; - homepage = "http://jsoftware.com/"; + maintainers = with maintainers; [ raskin synthetica AndersonTorres ]; + platforms = with platforms; unix; }; } diff --git a/pkgs/development/interpreters/octave/default.nix b/pkgs/development/interpreters/octave/default.nix index 2fcdab95509..ab2b6af9d5f 100644 --- a/pkgs/development/interpreters/octave/default.nix +++ b/pkgs/development/interpreters/octave/default.nix @@ -119,6 +119,11 @@ let sha256 = "sha256-1KnYHz9ntKbgfLeoDcsQrV6RdvzDB2LHCoFYCmS4sLY="; }; + patches = [ + # https://savannah.gnu.org/bugs/?func=detailitem&item_id=62436 + ./patches/bug62436.patch + ]; + buildInputs = [ readline ncurses diff --git a/pkgs/development/interpreters/octave/patches/bug62436.patch b/pkgs/development/interpreters/octave/patches/bug62436.patch new file mode 100644 index 00000000000..d9d7cfc3040 --- /dev/null +++ b/pkgs/development/interpreters/octave/patches/bug62436.patch @@ -0,0 +1,27 @@ +# HG changeset patch +# User John Donoghue <john.donoghue@ieee.org> +# Date 1652358904 14400 +# Thu May 12 08:35:04 2022 -0400 +# Branch stable +# Node ID 8c940cfcce257369677c09154da2aab2c56eaa79 +# Parent 63710f3bd9811c2d206ac9e7b4f47cf06c47e153 +* scripts/pkg/private/build.m: check configure and Makefile exist before trying to unlink them (Bug #62436) + +diff -r 63710f3bd981 -r 8c940cfcce25 scripts/pkg/private/build.m +--- a/scripts/pkg/private/build.m Wed May 11 09:44:55 2022 -0700 ++++ b/scripts/pkg/private/build.m Thu May 12 08:35:04 2022 -0400 +@@ -77,8 +77,12 @@ + else + arch_abi = getarch (); + configure_make (desc, build_root, verbose); +- unlink (fullfile (build_root, "src", "configure")); +- unlink (fullfile (build_root, "src", "Makefile")); ++ if exist (fullfile (build_root, "src", "configure"), "file") ++ unlink (fullfile (build_root, "src", "configure")); ++ endif ++ if exist (fullfile (build_root, "src", "Makefile"), "file") ++ unlink (fullfile (build_root, "src", "Makefile")); ++ endif + endif + tar_name = [desc.name "-" desc.version "-" arch_abi ".tar"]; + tar_path = fullfile (builddir, tar_name); diff --git a/pkgs/development/interpreters/spidermonkey/91.nix b/pkgs/development/interpreters/spidermonkey/91.nix index c1e647deb70..ee8557f49c9 100644 --- a/pkgs/development/interpreters/spidermonkey/91.nix +++ b/pkgs/development/interpreters/spidermonkey/91.nix @@ -19,11 +19,11 @@ stdenv.mkDerivation rec { pname = "spidermonkey"; - version = "91.8.0"; + version = "91.9.1"; src = fetchurl { url = "mirror://mozilla/firefox/releases/${version}esr/source/firefox-${version}esr.source.tar.xz"; - sha512 = "edea2c7d4d3d0322091b20b623019ef041090d9f89f33c8e3140f66a54624261f278257393db70d2038154de8ee02da0bee6ecf85c281f3558338da71fc173c3"; + sha512 = "d432d559f2c5f4b0bc66a755db7d61585e24a727cd8d18630854b3fb8633d54baf61ed65b580345b13d52b66288aa15ca8ca5cfcde8231e88108241f0b007683"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/SDL2/default.nix b/pkgs/development/libraries/SDL2/default.nix index 1ce2b1525f0..0112748695e 100644 --- a/pkgs/development/libraries/SDL2/default.nix +++ b/pkgs/development/libraries/SDL2/default.nix @@ -22,6 +22,7 @@ , waylandSupport ? stdenv.isLinux && !stdenv.hostPlatform.isAndroid , wayland , wayland-protocols +, wayland-scanner , drmSupport ? stdenv.isLinux && !stdenv.hostPlatform.isAndroid , libdrm , mesa @@ -76,9 +77,18 @@ stdenv.mkDerivation rec { ./find-headers.patch ]; + postPatch = '' + # Fix running wayland-scanner for the build platform when cross-compiling. + # See comment here: https://github.com/libsdl-org/SDL/issues/4860#issuecomment-1119003545 + substituteInPlace configure \ + --replace '$(WAYLAND_SCANNER)' 'wayland-scanner' + ''; + + strictDeps = true; + depsBuildBuild = [ pkg-config ]; - nativeBuildInputs = [ pkg-config ] ++ optionals waylandSupport [ wayland ]; + nativeBuildInputs = [ pkg-config ] ++ optionals waylandSupport [ wayland wayland-scanner ]; propagatedBuildInputs = dlopenPropagatedBuildInputs; diff --git a/pkgs/development/libraries/amdvlk/default.nix b/pkgs/development/libraries/amdvlk/default.nix index 081da52b804..cafa505da62 100644 --- a/pkgs/development/libraries/amdvlk/default.nix +++ b/pkgs/development/libraries/amdvlk/default.nix @@ -22,13 +22,13 @@ let in stdenv.mkDerivation rec { pname = "amdvlk"; - version = "2022.Q2.1"; + version = "2022.Q2.2"; src = fetchRepoProject { name = "${pname}-src"; manifest = "https://github.com/GPUOpen-Drivers/AMDVLK.git"; rev = "refs/tags/v-${version}"; - sha256 = "MJTpPzmIcTf4/RNte1oDYmn6/wLUJrHM2igrGgXIVqI="; + sha256 = "4LV6g2snT1usY+Ic9Hb/IwXAJQ97I9DigZCah6mwewA="; }; buildInputs = [ diff --git a/pkgs/development/libraries/atk/default.nix b/pkgs/development/libraries/atk/default.nix index 08e6e5b0e41..ce3352b5751 100644 --- a/pkgs/development/libraries/atk/default.nix +++ b/pkgs/development/libraries/atk/default.nix @@ -1,36 +1,49 @@ -{ lib, stdenv, fetchurl, meson, ninja, gettext, pkg-config, glib -, fixDarwinDylibNames, gobject-introspection, gnome +{ stdenv +, lib +, fetchurl +, meson +, ninja +, gettext +, pkg-config +, glib +, fixDarwinDylibNames +, gobject-introspection +, gnome }: -let +stdenv.mkDerivation rec { pname = "atk"; - version = "2.36.0"; -in + version = "2.38.0"; -stdenv.mkDerivation rec { - name = "${pname}-${version}"; + outputs = [ "out" "dev" ]; src = fetchurl { - url = "mirror://gnome/sources/${pname}/${lib.versions.majorMinor version}/${name}.tar.xz"; - sha256 = "1217cmmykjgkkim0zr1lv5j13733m4w5vipmy4ivw0ll6rz28xpv"; + url = "mirror://gnome/sources/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; + sha256 = "rE3ipO9L1WZQUpUv4WllfmXolcUFff+zwqgQ9hkaDDY="; }; - outputs = [ "out" "dev" ]; + patches = [ + # meson builds an incorrect .pc file + # glib should be Requires not Requires.private + ./fix_pc.patch + ]; - nativeBuildInputs = [ meson ninja pkg-config gettext gobject-introspection glib ] - ++ lib.optional stdenv.hostPlatform.isDarwin fixDarwinDylibNames; + nativeBuildInputs = [ + meson + ninja + pkg-config + gettext + gobject-introspection + glib + ] ++ lib.optionals stdenv.hostPlatform.isDarwin [ + fixDarwinDylibNames + ]; propagatedBuildInputs = [ # Required by atk.pc glib ]; - patches = [ - # meson builds an incorrect .pc file - # glib should be Requires not Requires.private - ./fix_pc.patch - ]; - mesonFlags = [ "-Dintrospection=${lib.boolToString (stdenv.buildPlatform == stdenv.hostPlatform)}" ]; @@ -55,7 +68,7 @@ stdenv.mkDerivation rec { control running applications. ''; - homepage = "http://library.gnome.org/devel/atk/"; + homepage = "https://gitlab.gnome.org/GNOME/atk"; license = lib.licenses.lgpl2Plus; diff --git a/pkgs/development/libraries/boolstuff/default.nix b/pkgs/development/libraries/boolstuff/default.nix index b49355f60e9..c54cffb5285 100644 --- a/pkgs/development/libraries/boolstuff/default.nix +++ b/pkgs/development/libraries/boolstuff/default.nix @@ -1,11 +1,11 @@ { lib, stdenv, fetchurl, pkg-config }: stdenv.mkDerivation rec { pname = "boolstuff"; - version = "0.1.16"; + version = "0.1.17"; src = fetchurl { - url = "https://perso.b2b2c.ca/~sarrazip/dev/${pname}-${version}.tar.gz"; - sha256 = "10qynbyw723gz2vrvn4xk2var172kvhlz3l3l80qbdsfb3d12wn0"; + url = "http://perso.b2b2c.ca/~sarrazip/dev/${pname}-${version}.tar.gz"; + hash = "sha256-WPFUoTUofigPxTRo6vUbVTEVWMeEPDWszCA05toOX0I="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/libraries/bullet/default.nix b/pkgs/development/libraries/bullet/default.nix index e37da386cd6..9a882fd7418 100644 --- a/pkgs/development/libraries/bullet/default.nix +++ b/pkgs/development/libraries/bullet/default.nix @@ -11,13 +11,13 @@ stdenv.mkDerivation rec { pname = "bullet"; - version = "3.22b"; + version = "3.23"; src = fetchFromGitHub { owner = "bulletphysics"; repo = "bullet3"; rev = version; - sha256 = "sha256-hf2b7enh9mziPKFcdU8NwLdhcxhV7Ididf9Bwwa+5/M="; + sha256 = "sha256-XZpwCVfSJD3W93BJrGefy3dGrevNzChU+TrKalMpY4Q="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/cln/default.nix b/pkgs/development/libraries/cln/default.nix index 23bbd84a209..e630cb4dda6 100644 --- a/pkgs/development/libraries/cln/default.nix +++ b/pkgs/development/libraries/cln/default.nix @@ -1,10 +1,14 @@ -{ lib, stdenv, fetchurl, gmp }: +{ lib, stdenv, fetchurl, fetchgit, gmp }: stdenv.mkDerivation rec { pname = "cln"; version = "1.3.6"; - src = fetchurl { + src = if stdenv.isDarwin then fetchgit { + url = "git://www.ginac.de/cln.git"; + rev = "cln_${builtins.replaceStrings [ "." ] [ "-" ] version}"; + sha256 = "sha256-P32F4TIDhE2Dwzydq8iFK6ch3kICJcXeeXHs5PBQG88="; + } else fetchurl { url = "${meta.homepage}${pname}-${version}.tar.bz2"; sha256 = "0jlq9l4hphk7qqlgqj9ihjp4m3rwjbhk6q4v00lsbgbri07574pl"; }; diff --git a/pkgs/development/libraries/console-bridge/default.nix b/pkgs/development/libraries/console-bridge/default.nix index e2370ecce64..5c85bbd4a19 100644 --- a/pkgs/development/libraries/console-bridge/default.nix +++ b/pkgs/development/libraries/console-bridge/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "console-bridge"; - version = "1.0.1"; + version = "1.0.2"; src = fetchFromGitHub { owner = "ros"; repo = "console_bridge"; rev = version; - sha256 = "18qycrjnf7v8n5bipij91jsv7ap98z5dsp93w2gz9rah4lfjb80q"; + sha256 = "sha256-M3GocT0hodw3Sc2NHcFDiPVZ1XN7BqIUuYLW8OaXMqM="; }; nativeBuildInputs = [ cmake validatePkgConfig ]; diff --git a/pkgs/development/libraries/cpp-ipfs-api/default.nix b/pkgs/development/libraries/cpp-ipfs-api/default.nix deleted file mode 100644 index 315a477e72a..00000000000 --- a/pkgs/development/libraries/cpp-ipfs-api/default.nix +++ /dev/null @@ -1,28 +0,0 @@ -{ lib, stdenv, fetchFromGitHub, curl, cmake, nlohmann_json }: - -stdenv.mkDerivation { - pname = "cpp-ipfs-api"; - version = "2017-01-04"; - - src = fetchFromGitHub { - owner = "vasild"; - repo = "cpp-ipfs-api"; - rev = "96a890f4518665a56581a2a52311eaa65928eac8"; - sha256 = "1z6gbd7npg4pd9wmdyzcp9h12sg84d7a43c69pp4lzqkyqg8pz1g"; - }; - - nativeBuildInputs = [ cmake ]; - buildInputs = [ curl ]; - propagatedBuildInputs = [ nlohmann_json ]; - - NIX_CFLAGS_COMPILE = [ - "-Wno-error=range-loop-construct" - ]; - - meta = with lib; { - description = "IPFS C++ API client library"; - homepage = "https://github.com/vasild/cpp-ipfs-api"; - license = licenses.mit; - platforms = platforms.all; - }; -} diff --git a/pkgs/development/libraries/cpp-ipfs-http-client/default.nix b/pkgs/development/libraries/cpp-ipfs-http-client/default.nix new file mode 100644 index 00000000000..44fcbe5463c --- /dev/null +++ b/pkgs/development/libraries/cpp-ipfs-http-client/default.nix @@ -0,0 +1,35 @@ +{ lib, stdenv, fetchFromGitHub, curl, cmake, nlohmann_json }: + +stdenv.mkDerivation { + pname = "cpp-ipfs-http-client"; + version = "unstable-2022-01-30"; + + src = fetchFromGitHub { + owner = "vasild"; + repo = "cpp-ipfs-http-client"; + rev = "3cdfa7fc6326e49fc81b3c7ca43ce83bdccef6d9"; + sha256 = "sha256-/oyafnk4SbrvoCh90wkZXNBjknMKA6EEUoEGo/amLUo="; + }; + + patches = [ ./unvendor-nlohmann-json.patch ]; + + postPatch = '' + substituteInPlace CMakeLists.txt \ + --replace '# Fetch "JSON for Modern C++"' "include_directories(${nlohmann_json}/include)" + ''; + + nativeBuildInputs = [ cmake ]; + buildInputs = [ curl ]; + propagatedBuildInputs = [ nlohmann_json ]; + + NIX_CFLAGS_COMPILE = [ + "-Wno-error=range-loop-construct" + ]; + + meta = with lib; { + description = "IPFS C++ API client library"; + homepage = "https://github.com/vasild/cpp-ipfs-http-client"; + license = licenses.mit; + platforms = [ "x86_64-linux" "x86_64-darwin" ]; + }; +} diff --git a/pkgs/development/libraries/cpp-ipfs-http-client/unvendor-nlohmann-json.patch b/pkgs/development/libraries/cpp-ipfs-http-client/unvendor-nlohmann-json.patch new file mode 100644 index 00000000000..e21b4e9a7a7 --- /dev/null +++ b/pkgs/development/libraries/cpp-ipfs-http-client/unvendor-nlohmann-json.patch @@ -0,0 +1,27 @@ +--- source/CMakeLists.txt ++++ source/CMakeLists.txt +@@ -56,11 +56,6 @@ target_include_directories(${IPFS_API_LIBNAME} + ) + + # Fetch "JSON for Modern C++" +-include(FetchContent) +-message(STATUS "Fetching nlohmann/JSON") +-# Retrieve Nlohmann JSON +-FetchContent_Declare(json URL https://github.com/nlohmann/json/releases/download/v3.10.5/json.tar.xz) +-FetchContent_MakeAvailable(json) + + # libcurl requires additional libs only for static Windows builds + if(WIN32) +@@ -71,12 +66,11 @@ set_target_properties(${IPFS_API_LIBNAME} PROPERTIES + SOVERSION ${PROJECT_VERSION_MAJOR} + VERSION ${PROJECT_VERSION} + ) +-target_link_libraries(${IPFS_API_LIBNAME} ${CURL_LIBRARIES} ${WINDOWS_CURL_LIBS} nlohmann_json::nlohmann_json) ++target_link_libraries(${IPFS_API_LIBNAME} ${CURL_LIBRARIES} ${WINDOWS_CURL_LIBS}) + if(NOT DISABLE_INSTALL) + install(TARGETS ${IPFS_API_LIBNAME} DESTINATION lib) + install(FILES include/ipfs/client.h DESTINATION include/ipfs) + install(FILES include/ipfs/http/transport.h DESTINATION include/ipfs/http) +- install(FILES ${json_SOURCE_DIR}/include/nlohmann/json.hpp DESTINATION include/nlohmann) + endif() + # Tests, use "CTEST_OUTPUT_ON_FAILURE=1 make test" to see output from failed tests diff --git a/pkgs/development/libraries/ctl/default.nix b/pkgs/development/libraries/ctl/default.nix deleted file mode 100644 index 0a9f50a6aaa..00000000000 --- a/pkgs/development/libraries/ctl/default.nix +++ /dev/null @@ -1,41 +0,0 @@ -{ lib, stdenv, fetchFromGitHub, fetchpatch, cmake, pkg-config, ilmbase, libtiff, openexr }: - -stdenv.mkDerivation rec { - pname = "ctl"; - version = "1.5.2"; - - src = fetchFromGitHub { - owner = "ampas"; - repo = pname; - rev = "${pname}-${version}"; - sha256 = "0a698rd1cmixh3mk4r1xa6rjli8b8b7dbx89pb43xkgqxy67glwx"; - }; - - patches = [ - (fetchpatch { - name = "ctl-1.5.2-ilm_230.patch"; - url = "https://src.fedoraproject.org/rpms/CTL/raw/9d7c15a91bccdc0a9485d463bf2789be72e6b17d/f/ctl-1.5.2-ilm_230.patch"; - sha256 = "0mdx7llwrm0q8ai53zhyxi40i9h5s339dbkqpqv30yzi2xpnfj3d"; - }) - ]; - - postPatch = '' - # Fix include guard name - substituteInPlace lib/dpx/dpx_raw.hh \ - --replace CRL_DPX_RAW_INTERNAL_INCLUDE CTL_DPX_RAW_INTERNAL_INCLUDE - - # Fix undefined symbols (link with Imath) - substituteInPlace lib/IlmCtlMath/CMakeLists.txt \ - --replace "( IlmCtlMath IlmCtl )" "( IlmCtlMath IlmCtl Imath)" - ''; - - nativeBuildInputs = [ cmake pkg-config ]; - buildInputs = [ libtiff ilmbase openexr ]; - - meta = with lib; { - description = "Color Transformation Language"; - homepage = "https://github.com/ampas/CTL"; - license = "A.M.P.A.S"; # BSD-derivative, free but GPL incompatible - platforms = platforms.all; - }; -} diff --git a/pkgs/development/libraries/dbus/default.nix b/pkgs/development/libraries/dbus/default.nix index 6e3a6ed5b30..e7852949249 100644 --- a/pkgs/development/libraries/dbus/default.nix +++ b/pkgs/development/libraries/dbus/default.nix @@ -8,42 +8,26 @@ , systemd , audit , libapparmor -, libX11 ? null -, libICE ? null -, libSM ? null -, x11Support ? (stdenv.isLinux || stdenv.isDarwin) , dbus , docbook_xml_dtd_44 , docbook-xsl-nons , xmlto , autoreconfHook , autoconf-archive +, x11Support ? (stdenv.isLinux || stdenv.isDarwin) +, xorg }: stdenv.mkDerivation rec { pname = "dbus"; - version = "1.12.20"; + version = "1.14.0"; src = fetchurl { - url = "https://dbus.freedesktop.org/releases/dbus/dbus-${version}.tar.gz"; - sha256 = "1zp5gpx61v1cpqf2zwb1cidhp9xylvw49d3zydkxqk6b1qa20xpp"; + url = "https://dbus.freedesktop.org/releases/dbus/dbus-${version}.tar.xz"; + sha256 = "sha256-zNfM43WW4KGVWP1mSNEnKrQ/AR2AyGNa6o/QutWK69Q="; }; patches = [ - # 'generate.consistent.ids=1' ensures reproducible docs, for further details see - # http://docbook.sourceforge.net/release/xsl/current/doc/html/generate.consistent.ids.html - # Also applied upstream in https://gitlab.freedesktop.org/dbus/dbus/-/merge_requests/189, - # expected in version 1.14 - ./docs-reproducible-ids.patch - # AC_PATH_XTRA doesn't seem to find X11 libs even though libX11 seems - # to provide valid pkg-config files. This replace AC_PATH_XTRA with - # PKG_CHECK_MODULES. - # MR merged cf https://gitlab.freedesktop.org/dbus/dbus/-/merge_requests/212/diffs?commit_id=23880a181e82ee7f - (fetchpatch { - url = "https://gitlab.freedesktop.org/dbus/dbus/-/commit/6bfaea0707ba1a7788c4b6d30c18fb094f3a1dd4.patch"; - sha256 = "1d8ay55n2ksw5faqx3hsdpfni3xl3gq9hnjl65073xcfnx67x8d2"; - }) - # Fix dbus-daemon crashing when running tests due to long XDG_DATA_DIRS. # https://gitlab.freedesktop.org/dbus/dbus/-/merge_requests/302 (fetchpatch { @@ -68,6 +52,7 @@ stdenv.mkDerivation rec { outputs = [ "out" "dev" "lib" "doc" "man" ]; + strictDeps = true; nativeBuildInputs = [ autoreconfHook autoconf-archive @@ -82,11 +67,11 @@ stdenv.mkDerivation rec { ]; buildInputs = - lib.optionals x11Support [ + lib.optionals x11Support (with xorg; [ libX11 libICE libSM - ] ++ lib.optional enableSystemd systemd + ]) ++ lib.optional enableSystemd systemd ++ lib.optionals stdenv.isLinux [ audit libapparmor ]; # ToDo: optional selinux? @@ -104,7 +89,8 @@ stdenv.mkDerivation rec { "--with-systemdsystemunitdir=${placeholder "out"}/etc/systemd/system" "--with-systemduserunitdir=${placeholder "out"}/etc/systemd/user" ] ++ lib.optional (!x11Support) "--without-x" - ++ lib.optionals stdenv.isLinux [ "--enable-apparmor" "--enable-libaudit" ]; + ++ lib.optionals stdenv.isLinux [ "--enable-apparmor" "--enable-libaudit" ] + ++ lib.optionals enableSystemd [ "SYSTEMCTL=${systemd}/bin/systemctl" ]; NIX_CFLAGS_LINK = lib.optionalString (!stdenv.isDarwin) "-Wl,--as-needed"; diff --git a/pkgs/development/libraries/dbus/docs-reproducible-ids.patch b/pkgs/development/libraries/dbus/docs-reproducible-ids.patch deleted file mode 100644 index 2356b64d95c..00000000000 --- a/pkgs/development/libraries/dbus/docs-reproducible-ids.patch +++ /dev/null @@ -1,15 +0,0 @@ -diff --color -Naur dbus-1.12.20-original/doc/Makefile.in dbus-1.12.20-hacked2/doc/Makefile.in ---- dbus-1.12.20-original/doc/Makefile.in 2020-07-02 12:10:41.000000000 +0200 -+++ dbus-1.12.20-hacked2/doc/Makefile.in 2020-11-07 09:57:15.297694773 +0100 -@@ -870,8 +870,10 @@ - .PRECIOUS: Makefile - - -+# 'generate.consistent.ids=1' ensures reproducible docs, for further details see -+# http://docbook.sourceforge.net/release/xsl/current/doc/html/generate.consistent.ids.html - @DBUS_XML_DOCS_ENABLED_TRUE@%.html: %.xml --@DBUS_XML_DOCS_ENABLED_TRUE@ $(XMLTO) html-nochunks $< -+@DBUS_XML_DOCS_ENABLED_TRUE@ $(XMLTO) --stringparam generate.consistent.ids=1 html-nochunks $< - - @DBUS_XML_DOCS_ENABLED_TRUE@%.1: %.1.xml - @DBUS_XML_DOCS_ENABLED_TRUE@ $(XMLTO) man $< diff --git a/pkgs/development/libraries/dlib/default.nix b/pkgs/development/libraries/dlib/default.nix index ea6d45e5dff..11a80987dca 100644 --- a/pkgs/development/libraries/dlib/default.nix +++ b/pkgs/development/libraries/dlib/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation rec { pname = "dlib"; - version = "19.23"; + version = "19.24"; src = fetchFromGitHub { owner = "davisking"; repo = "dlib"; rev ="v${version}"; - sha256 = "sha256-88vusoLEkjh3WRh/PxPtsVIFk85serRq2VxVcEus3IE="; + sha256 = "sha256-YhIjP9TIIyQF6lBj85gyVRIAAwgIodzh0ViQL8v2ACA="; }; postPatch = '' diff --git a/pkgs/development/libraries/flann/default.nix b/pkgs/development/libraries/flann/default.nix index c294aec893a..ec1715b005f 100644 --- a/pkgs/development/libraries/flann/default.nix +++ b/pkgs/development/libraries/flann/default.nix @@ -32,6 +32,7 @@ stdenv.mkDerivation rec { url = "https://salsa.debian.org/science-team/flann/-/raw/debian/1.9.1+dfsg-9/debian/patches/0001-src-cpp-fix-cmake-3.11-build.patch"; sha256 = "REsBnbe6vlrZ+iCcw43kR5wy2o6q10RM73xjW5kBsr4="; }) + ] ++ lib.optionals (!stdenv.cc.isClang) [ # Avoid the bundled version of LZ4 and instead use the system one. (fetchpatch { url = "https://salsa.debian.org/science-team/flann/-/raw/debian/1.9.1+dfsg-9/debian/patches/0003-Use-system-version-of-liblz4.patch"; @@ -57,7 +58,8 @@ stdenv.mkDerivation rec { unzip ]; - propagatedBuildInputs = [ lz4 ]; + # lz4 unbundling broken for llvm, use internal version + propagatedBuildInputs = lib.optional (!stdenv.cc.isClang) lz4; buildInputs = lib.optionals enablePython [ python3 ]; diff --git a/pkgs/development/libraries/folly/default.nix b/pkgs/development/libraries/folly/default.nix index dfc194f1d4c..c3fe3ba2ce7 100644 --- a/pkgs/development/libraries/folly/default.nix +++ b/pkgs/development/libraries/folly/default.nix @@ -52,7 +52,7 @@ stdenv.mkDerivation rec { zstd ]; - NIX_CFLAGS_COMPILE = [ "-DFOLLY_MOBILE=${if follyMobile then "1" else "0"}" ]; + NIX_CFLAGS_COMPILE = [ "-DFOLLY_MOBILE=${if follyMobile then "1" else "0"}" "-fpermissive" ]; cmakeFlags = [ "-DBUILD_SHARED_LIBS=ON" ]; meta = with lib; { @@ -60,7 +60,7 @@ stdenv.mkDerivation rec { homepage = "https://github.com/facebook/folly"; license = licenses.asl20; # 32bit is not supported: https://github.com/facebook/folly/issues/103 - platforms = [ "x86_64-linux" "x86_64-darwin" "aarch64-darwin" ]; + platforms = [ "x86_64-linux" "x86_64-darwin" "aarch64-darwin" "aarch64-linux" ]; maintainers = with maintainers; [ abbradar pierreis ]; }; } diff --git a/pkgs/development/libraries/fribidi/default.nix b/pkgs/development/libraries/fribidi/default.nix index 3549368fecb..3dae39b3c38 100644 --- a/pkgs/development/libraries/fribidi/default.nix +++ b/pkgs/development/libraries/fribidi/default.nix @@ -10,14 +10,14 @@ stdenv.mkDerivation rec { pname = "fribidi"; - version = "1.0.11"; + version = "1.0.12"; outputs = [ "out" "devdoc" ]; # NOTE: Only URL tarball has "Have pre-generated man pages: true", which works-around upstream usage of some rare ancient `c2man` fossil application. src = fetchurl { url = "https://github.com/fribidi/fribidi/releases/download/v${version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-MPk+nGPuYn0aLO3PWaw01FvzAkCYL5nkTG4BVGa05z0="; + sha256 = "sha256-DNIz+X/IxnuzrCfOhEDe9dP/rPUWdluRwsxlRJgpNJU="; }; postPatch = '' diff --git a/pkgs/development/libraries/gettext/default.nix b/pkgs/development/libraries/gettext/default.nix index 22acc73c49c..a1270af259c 100644 --- a/pkgs/development/libraries/gettext/default.nix +++ b/pkgs/development/libraries/gettext/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchurl, fetchpatch, libiconv, xz }: +{ stdenv, lib, fetchurl, fetchpatch, libiconv, xz, bash }: # Note: this package is used for bootstrapping fetchurl, and thus # cannot use fetchpatch! All mutable patches (generated by GitHub or @@ -47,12 +47,14 @@ stdenv.mkDerivation rec { sed -i -e "s/\(libgettextsrc_la_LDFLAGS = \)/\\1..\/gnulib-lib\/libxml_rpl.la /" gettext-tools/src/Makefile.in ''; + strictDeps = true; nativeBuildInputs = [ xz xz.bin ]; + buildInputs = [ bash ] # HACK, see #10874 (and 14664) - buildInputs = lib.optional (!stdenv.isLinux && !stdenv.hostPlatform.isCygwin) libiconv; + ++ lib.optionals (!stdenv.isLinux && !stdenv.hostPlatform.isCygwin) [ libiconv ]; setupHooks = [ ../../../build-support/setup-hooks/role.bash diff --git a/pkgs/development/libraries/glibc/2.34-master.patch.gz b/pkgs/development/libraries/glibc/2.34-master.patch.gz index 8fb02ca6d72..b7aa7518c37 100644 --- a/pkgs/development/libraries/glibc/2.34-master.patch.gz +++ b/pkgs/development/libraries/glibc/2.34-master.patch.gz Binary files differdiff --git a/pkgs/development/libraries/glibc/common.nix b/pkgs/development/libraries/glibc/common.nix index bf77f6abaa3..91c3d55926a 100644 --- a/pkgs/development/libraries/glibc/common.nix +++ b/pkgs/development/libraries/glibc/common.nix @@ -44,7 +44,7 @@ let version = "2.34"; - patchSuffix = "-115"; + patchSuffix = "-210"; sha256 = "sha256-RNJqH+ILiFOkj0cOrQHkJ56GmsFJsZXdpORKGV2YGrI="; in @@ -63,7 +63,7 @@ stdenv.mkDerivation ({ [ /* No tarballs for stable upstream branch, only https://sourceware.org/git/glibc.git and using git would complicate bootstrapping. $ git fetch --all -p && git checkout origin/release/2.34/master && git describe - glibc-2.34-115-gd5d1c95aaf + glibc-2.34-210-ge123f08ad5 $ git show --minimal --reverse glibc-2.34.. | gzip -9n --rsyncable - > 2.34-master.patch.gz To compare the archive contents zdiff can be used. diff --git a/pkgs/development/libraries/glpng/default.nix b/pkgs/development/libraries/glpng/default.nix index 1194d988c07..34c58774fb2 100644 --- a/pkgs/development/libraries/glpng/default.nix +++ b/pkgs/development/libraries/glpng/default.nix @@ -22,6 +22,7 @@ stdenv.mkDerivation rec { cmake pkg-config ]; + buildInputs = [ libGL libpng @@ -30,7 +31,7 @@ stdenv.mkDerivation rec { meta = with lib; { homepage = "https://repo.or.cz/glpng.git/blob_plain/HEAD:/glpng.htm"; - description = "PNG loader for OpenGL"; + description = "PNG loader library for OpenGL"; license = licenses.mit; maintainers = with maintainers; [ AndersonTorres ]; platforms = platforms.unix; diff --git a/pkgs/development/libraries/grpc/default.nix b/pkgs/development/libraries/grpc/default.nix index f55e2c2f6e4..0144cec39e9 100644 --- a/pkgs/development/libraries/grpc/default.nix +++ b/pkgs/development/libraries/grpc/default.nix @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { pname = "grpc"; - version = "1.45.2"; # N.B: if you change this, please update: + version = "1.46.3"; # N.B: if you change this, please update: # pythonPackages.grpcio-tools # pythonPackages.grpcio-status @@ -28,7 +28,7 @@ stdenv.mkDerivation rec { owner = "grpc"; repo = "grpc"; rev = "v${version}"; - sha256 = "sha256-l2r1NdbfwViXfLcwbfUgLueqfAVnLzI+gdEarlkIqkI="; + sha256 = "sha256-RiXtKlRtlbqwrSxI904dgSu3da0A6Fwk+/hWHIG7A5E="; fetchSubmodules = true; }; diff --git a/pkgs/development/libraries/gstreamer/base/default.nix b/pkgs/development/libraries/gstreamer/base/default.nix index a6942445fc5..599e6586ea0 100644 --- a/pkgs/development/libraries/gstreamer/base/default.nix +++ b/pkgs/development/libraries/gstreamer/base/default.nix @@ -5,7 +5,6 @@ , meson , ninja , gettext -, gobject-introspection , python3 , gstreamer , orc @@ -37,6 +36,8 @@ , enableCdparanoia ? (!stdenv.isDarwin) , cdparanoia , glib +, withIntrospection ? stdenv.buildPlatform == stdenv.hostPlatform +, gobject-introspection }: stdenv.mkDerivation rec { @@ -50,6 +51,7 @@ stdenv.mkDerivation rec { sha256 = "0162ly7pscymq6bsf1d5fva2k9s16zvfwyi1q6z4yfd97d0sdn4n"; }; + strictDeps = true; nativeBuildInputs = [ meson ninja @@ -58,10 +60,11 @@ stdenv.mkDerivation rec { gettext orc glib - gobject-introspection - + gstreamer # docs # TODO add hotdoc here + ] ++ lib.optionals withIntrospection [ + gobject-introspection ] ++ lib.optional enableWayland wayland; buildInputs = [ @@ -88,6 +91,8 @@ stdenv.mkDerivation rec { ] ++ lib.optionals enableWayland [ wayland wayland-protocols + ] ++ lib.optionals withIntrospection [ + gobject-introspection ] ++ lib.optional enableCocoa Cocoa ++ lib.optional enableCdparanoia cdparanoia; @@ -101,8 +106,8 @@ stdenv.mkDerivation rec { "-Dgl-graphene=disabled" # not packaged in nixpkgs as of writing # See https://github.com/GStreamer/gst-plugins-base/blob/d64a4b7a69c3462851ff4dcfa97cc6f94cd64aef/meson_options.txt#L15 for a list of choices "-Dgl_winsys=${lib.concatStringsSep "," (lib.optional enableX11 "x11" ++ lib.optional enableWayland "wayland" ++ lib.optional enableCocoa "cocoa")}" + "-Dintrospection=${if withIntrospection then "enabled" else "disabled"}" ] ++ lib.optionals (stdenv.buildPlatform != stdenv.hostPlatform) [ - "-Dintrospection=disabled" "-Dtests=disabled" ] ++ lib.optional (!enableX11) "-Dx11=disabled" diff --git a/pkgs/development/libraries/gstreamer/core/default.nix b/pkgs/development/libraries/gstreamer/core/default.nix index dcb4fcaef93..c5f836f26a4 100644 --- a/pkgs/development/libraries/gstreamer/core/default.nix +++ b/pkgs/development/libraries/gstreamer/core/default.nix @@ -4,7 +4,6 @@ , ninja , pkg-config , gettext -, gobject-introspection , bison , flex , python3 @@ -17,6 +16,8 @@ , bash-completion , lib , CoreServices +, withIntrospection ? stdenv.buildPlatform == stdenv.hostPlatform +, gobject-introspection }: stdenv.mkDerivation rec { @@ -37,6 +38,7 @@ stdenv.mkDerivation rec { sha256 = "0cghi6n4nhdbajz3wqcgbh5xm94myvnqgsi9g2bz9n1s9904l2fy"; }; + strictDeps = true; nativeBuildInputs = [ meson ninja @@ -47,11 +49,14 @@ stdenv.mkDerivation rec { python3 makeWrapper glib - gobject-introspection bash-completion # documentation # TODO add hotdoc here + ] ++ lib.optionals stdenv.isLinux [ + libcap # for setcap binary + ] ++ lib.optionals withIntrospection [ + gobject-introspection ]; buildInputs = [ @@ -60,6 +65,8 @@ stdenv.mkDerivation rec { libcap libunwind elfutils + ] ++ lib.optionals withIntrospection [ + gobject-introspection ] ++ lib.optionals stdenv.isDarwin [ CoreServices ]; @@ -72,8 +79,7 @@ stdenv.mkDerivation rec { "-Ddbghelp=disabled" # not needed as we already provide libunwind and libdw, and dbghelp is a fallback to those "-Dexamples=disabled" # requires many dependencies and probably not useful for our users "-Ddoc=disabled" # `hotdoc` not packaged in nixpkgs as of writing - ] ++ lib.optionals (stdenv.buildPlatform != stdenv.hostPlatform) [ - "-Dintrospection=disabled" + "-Dintrospection=${if withIntrospection then "enabled" else "disabled"}" ] ++ lib.optionals stdenv.isDarwin [ # darwin.libunwind doesn't have pkg-config definitions so meson doesn't detect it. "-Dlibunwind=disabled" diff --git a/pkgs/development/libraries/gtk/4.x.nix b/pkgs/development/libraries/gtk/4.x.nix index e59e471a51e..e67599e0555 100644 --- a/pkgs/development/libraries/gtk/4.x.nix +++ b/pkgs/development/libraries/gtk/4.x.nix @@ -62,7 +62,7 @@ in stdenv.mkDerivation rec { pname = "gtk4"; - version = "4.6.3"; + version = "4.6.4"; outputs = [ "out" "dev" ] ++ lib.optionals x11Support [ "devdoc" ]; outputBin = "dev"; @@ -74,7 +74,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "mirror://gnome/sources/gtk/${lib.versions.majorMinor version}/gtk-${version}.tar.xz"; - sha256 = "pXrNDkSCmBcA/fhllsdBPLYe9H915HR/2oCegjG42Ww="; + sha256 = "p5orvMeTG3A/xPofy+G5BuIpoVIthU1SKAF2anm8rJ8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/http-parser/default.nix b/pkgs/development/libraries/http-parser/default.nix index aff5b1ea3c1..146262a4258 100644 --- a/pkgs/development/libraries/http-parser/default.nix +++ b/pkgs/development/libraries/http-parser/default.nix @@ -14,6 +14,7 @@ stdenv.mkDerivation rec { NIX_CFLAGS_COMPILE = "-Wno-error"; patches = [ ./build-shared.patch + ] ++ lib.optionals stdenv.isAarch32 [ # https://github.com/nodejs/http-parser/pull/510 (fetchpatch { url = "https://github.com/nodejs/http-parser/commit/4f15b7d510dc7c6361a26a7c6d2f7c3a17f8d878.patch"; diff --git a/pkgs/development/libraries/icu/59.nix b/pkgs/development/libraries/icu/59.nix deleted file mode 100644 index 9ca66ca525f..00000000000 --- a/pkgs/development/libraries/icu/59.nix +++ /dev/null @@ -1,4 +0,0 @@ -import ./base.nix { - version = "59.1"; - sha256 = "1zkmbg2932ggvpgjp8pys0cj6z8bw087y8858009shkrjfpzscki"; -} diff --git a/pkgs/development/libraries/icu/65.nix b/pkgs/development/libraries/icu/65.nix deleted file mode 100644 index c5074eea114..00000000000 --- a/pkgs/development/libraries/icu/65.nix +++ /dev/null @@ -1,4 +0,0 @@ -import ./base.nix { - version = "65.1"; - sha256 = "0j6r6qqnhfr5iqkx53k63ifkm93kv1kkb7h2mlgd1mnnndk79qsk"; -} diff --git a/pkgs/development/libraries/kde-frameworks/kimageformats.nix b/pkgs/development/libraries/kde-frameworks/kimageformats.nix index 86026bf50f4..cbdaf1da892 100644 --- a/pkgs/development/libraries/kde-frameworks/kimageformats.nix +++ b/pkgs/development/libraries/kde-frameworks/kimageformats.nix @@ -1,7 +1,7 @@ { mkDerivation, lib, extra-cmake-modules, - ilmbase, karchive, openexr, libavif, qtbase + ilmbase, karchive, openexr, libavif, libheif, qtbase }: let inherit (lib) getDev; in @@ -10,9 +10,12 @@ mkDerivation { pname = "kimageformats"; nativeBuildInputs = [ extra-cmake-modules ]; - buildInputs = [ karchive openexr libavif qtbase ]; + buildInputs = [ karchive openexr libavif libheif qtbase ]; outputs = [ "out" ]; # plugins only CXXFLAGS = "-I${getDev ilmbase}/include/OpenEXR"; + cmakeFlags = [ + "-DKIMAGEFORMATS_HEIF=ON" + ]; meta = with lib; { broken = versionOlder qtbase.version "5.14"; diff --git a/pkgs/development/libraries/kerberos/krb5.nix b/pkgs/development/libraries/kerberos/krb5.nix index e1251b0e942..bbb11522dee 100644 --- a/pkgs/development/libraries/kerberos/krb5.nix +++ b/pkgs/development/libraries/kerberos/krb5.nix @@ -19,11 +19,11 @@ in with lib; stdenv.mkDerivation rec { pname = "${type}krb5"; - version = "1.19.2"; + version = "1.19.3"; src = fetchurl { url = "https://kerberos.org/dist/krb5/${versions.majorMinor version}/krb5-${version}.tar.gz"; - sha256 = "0snz1jm2w4dkk65zcz953jmmv9mqa30fanch2bk8r3rs9vp3yi8h"; + sha256 = "1l6wp58zav37g03n2ig5qr0pslz38gh5cxgigbmxkjfxrxilil2n"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/libbsd/default.nix b/pkgs/development/libraries/libbsd/default.nix index 8c8e47b98a4..b8f6aac0b38 100644 --- a/pkgs/development/libraries/libbsd/default.nix +++ b/pkgs/development/libraries/libbsd/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "libbsd"; - version = "0.11.5"; + version = "0.11.6"; src = fetchurl { url = "https://libbsd.freedesktop.org/releases/${pname}-${version}.tar.xz"; - sha256 = "sha256-GpyVJSVjXBu2dwyyLpabk42Oap15EjYrmO6DcFmbDv0="; + sha256 = "sha256-GbOPMXLq9pPm4caHFGNhkMfkiFHkUiTXILO1vASZtd8="; }; outputs = [ "out" "dev" "man" ]; diff --git a/pkgs/development/libraries/libclc/default.nix b/pkgs/development/libraries/libclc/default.nix index c634892944c..3f6e12291a3 100644 --- a/pkgs/development/libraries/libclc/default.nix +++ b/pkgs/development/libraries/libclc/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, ninja, cmake, python3, llvmPackages }: +{ lib, stdenv, fetchFromGitHub, ninja, cmake, python3, llvmPackages, spirv-llvm-translator }: let llvm = llvmPackages.llvm; @@ -7,13 +7,13 @@ in stdenv.mkDerivation rec { pname = "libclc"; - version = "11.0.1"; + version = "12.0.1"; src = fetchFromGitHub { owner = "llvm"; repo = "llvm-project"; rev = "llvmorg-${version}"; - sha256 = "0bxh43hp1vl4axl3s9n2nb2ii8x1cbq98xz9c996f8rl5jy84ags"; + sha256 = "08s5w2db9imb2yaqsvxs6pg21csi1cf6wa35rf8x6q07mam7j8qv"; }; sourceRoot = "source/libclc"; @@ -21,10 +21,12 @@ stdenv.mkDerivation rec { postPatch = '' substituteInPlace CMakeLists.txt \ --replace 'find_program( LLVM_CLANG clang PATHS ''${LLVM_BINDIR} NO_DEFAULT_PATH )' \ - 'find_program( LLVM_CLANG clang PATHS "${clang-unwrapped}/bin" NO_DEFAULT_PATH )' + 'find_program( LLVM_CLANG clang PATHS "${clang-unwrapped}/bin" NO_DEFAULT_PATH )' \ + --replace 'find_program( LLVM_SPIRV llvm-spirv PATHS ''${LLVM_BINDIR} NO_DEFAULT_PATH )' \ + 'find_program( LLVM_SPIRV llvm-spirv PATHS "${spirv-llvm-translator}/bin" NO_DEFAULT_PATH )' ''; - nativeBuildInputs = [ cmake ninja python3 ]; + nativeBuildInputs = [ cmake ninja python3 spirv-llvm-translator ]; buildInputs = [ llvm clang-unwrapped ]; strictDeps = true; cmakeFlags = [ diff --git a/pkgs/development/libraries/libdeltachat/default.nix b/pkgs/development/libraries/libdeltachat/default.nix index 462434f9839..2e12c326166 100644 --- a/pkgs/development/libraries/libdeltachat/default.nix +++ b/pkgs/development/libraries/libdeltachat/default.nix @@ -17,13 +17,13 @@ stdenv.mkDerivation rec { pname = "libdeltachat"; - version = "1.80.0"; + version = "1.82.0"; src = fetchFromGitHub { owner = "deltachat"; repo = "deltachat-core-rust"; rev = version; - hash = "sha256-4b2tf7QmLQ5ltnkxUGCwA1TZSQRoyKaRGcxBxbSKDaE="; + hash = "sha256-cc5DFQucG1b+1QN0HTJLKAfCF3UvRunL07d4WdT6368="; }; patches = [ @@ -33,7 +33,7 @@ stdenv.mkDerivation rec { cargoDeps = rustPlatform.fetchCargoTarball { inherit src; name = "${pname}-${version}"; - hash = "sha256-t1/xztmiuJMqNkIe7cBzO7MaZQb6GtnIX5wxEpC+IFo="; + hash = "sha256-WYjTpHTYJGqvsUI8De6+tGgjYY1nKqPyfKP9IdZfrNY="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/libdigidocpp/default.nix b/pkgs/development/libraries/libdigidocpp/default.nix index 4f80709652d..171f830032d 100644 --- a/pkgs/development/libraries/libdigidocpp/default.nix +++ b/pkgs/development/libraries/libdigidocpp/default.nix @@ -2,12 +2,12 @@ , xercesc, xml-security-c, pkg-config, xsd, zlib, xalanc, xxd }: stdenv.mkDerivation rec { - version = "3.14.7"; + version = "3.14.8"; pname = "libdigidocpp"; src = fetchurl { url = "https://github.com/open-eid/libdigidocpp/releases/download/v${version}/libdigidocpp-${version}.tar.gz"; - sha256 = "sha256-QdctW2+T8kPNUJv30pXZ/qfnw1Uhq6gScSjUI+bZMfY="; + sha256 = "sha256-U5i5IAyJF4359q6M6mQemEuG7+inPYIXqLy8GHv4dkg="; }; nativeBuildInputs = [ cmake pkg-config xxd ]; diff --git a/pkgs/development/libraries/libfpx/default.nix b/pkgs/development/libraries/libfpx/default.nix index 589c08399a7..963c93ffc59 100644 --- a/pkgs/development/libraries/libfpx/default.nix +++ b/pkgs/development/libraries/libfpx/default.nix @@ -17,13 +17,15 @@ stdenv.mkDerivation rec { url = "https://gitweb.gentoo.org/repo/gentoo.git/plain/media-libs/libfpx/files/libfpx-1.3.1_p6-gcc6.patch?id=f28a947813dbc0a1fd1a8d4a712d58a64c48ca01"; sha256 = "032y8110zgnkdhkdq3745zk53am1x34d912rai8q70k3sskyq22p"; }) + # Pull upstream fix for -fno-common: + # https://github.com/ImageMagick/libfpx/pull/1 + (fetchpatch { + name = "fno-common.patch"; + url = "https://github.com/ImageMagick/libfpx/commit/c32b340581ba6c88c5092f374f655c7579b598a6.patch"; + sha256 = "1gbc0qb2ri1mj9r66wx0yn28fsr7zhhlyz2mwbica8wh34xijgz9"; + }) ]; - # This dead code causes a duplicate symbol error in Clang so just remove it - postPatch = if stdenv.cc.isClang then '' - substituteInPlace jpeg/ejpeg.h --replace "int No_JPEG_Header_Flag" "" - '' else null; - meta = with lib; { homepage = "http://www.imagemagick.org"; description = "A library for manipulating FlashPIX images"; diff --git a/pkgs/development/libraries/libfreeaptx/default.nix b/pkgs/development/libraries/libfreeaptx/default.nix index 9e30973f199..618b74258a4 100644 --- a/pkgs/development/libraries/libfreeaptx/default.nix +++ b/pkgs/development/libraries/libfreeaptx/default.nix @@ -11,6 +11,12 @@ stdenv.mkDerivation rec { sha256 = "sha256-eEUhOrKqb2hHWanY+knpY9FBEnjkkFTB+x6BZgMBpbo="; }; + postPatch = if stdenv.isDarwin then '' + substituteInPlace Makefile \ + --replace '-soname' '-install_name' \ + --replace 'lib$(NAME).so' 'lib$(NAME).dylib' + '' else null; + makeFlags = [ "PREFIX=${placeholder "out"}" # disable static builds @@ -21,11 +27,18 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; + postInstall = if stdenv.isDarwin then '' + install_name_tool -change libfreeaptx.dylib.0 $out/lib/libfreeaptx.dylib.0 $out/bin/freeaptxdec + install_name_tool -change libfreeaptx.dylib.0 $out/lib/libfreeaptx.dylib.0 $out/bin/freeaptxenc + install_name_tool -id $out/lib/libfreeaptx.dylib $out/lib/libfreeaptx.dylib + install_name_tool -id $out/lib/libfreeaptx.dylib.0 $out/lib/libfreeaptx.dylib.0 + '' else null; + meta = with lib; { description = "Free Implementation of Audio Processing Technology codec (aptX)"; license = licenses.lgpl21Plus; homepage = "https://github.com/iamthehorker/libfreeaptx"; - platforms = platforms.linux; + platforms = platforms.unix; maintainers = with maintainers; [ kranzes ]; }; } diff --git a/pkgs/development/libraries/libhandy/default.nix b/pkgs/development/libraries/libhandy/default.nix index 38e540efd4e..e9367f30af3 100644 --- a/pkgs/development/libraries/libhandy/default.nix +++ b/pkgs/development/libraries/libhandy/default.nix @@ -31,6 +31,7 @@ stdenv.mkDerivation rec { outputs = [ "out" "dev" + ] ++ lib.optionals (stdenv.buildPlatform == stdenv.hostPlatform) [ "devdoc" ] ++ lib.optionals enableGlade [ "glade" @@ -69,8 +70,9 @@ stdenv.mkDerivation rec { ]; mesonFlags = [ - "-Dgtk_doc=true" + "-Dgtk_doc=${lib.boolToString (stdenv.buildPlatform == stdenv.hostPlatform)}" "-Dglade_catalog=${if enableGlade then "enabled" else "disabled"}" + "-Dintrospection=${if (stdenv.buildPlatform == stdenv.hostPlatform) then "enabled" else "disabled"}" ]; # Uses define_variable in pkg-config, but we still need it to use the glade output diff --git a/pkgs/development/libraries/libical/default.nix b/pkgs/development/libraries/libical/default.nix index 77c595c9184..02c02b607e5 100644 --- a/pkgs/development/libraries/libical/default.nix +++ b/pkgs/development/libraries/libical/default.nix @@ -13,7 +13,7 @@ , python3 , tzdata , fixDarwinDylibNames -, introspectionSupport ? stdenv.buildPlatform == stdenv.hostPlatform +, withIntrospection ? stdenv.buildPlatform == stdenv.hostPlatform , gobject-introspection , vala }: @@ -31,6 +31,7 @@ stdenv.mkDerivation rec { sha256 = "sha256-gZ6IBjG5pNKJ+hWcTzXMP7yxL4he4LTklZGoC9vXra8="; }; + strictDeps = true; nativeBuildInputs = [ cmake ninja @@ -43,7 +44,7 @@ stdenv.mkDerivation rec { ] ++ lib.optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ # provides ical-glib-src-generator that runs during build libical - ] ++ lib.optionals introspectionSupport [ + ] ++ lib.optionals withIntrospection [ gobject-introspection vala ] ++ lib.optionals stdenv.isDarwin [ @@ -60,13 +61,14 @@ stdenv.mkDerivation rec { glib libxml2 icu + ] ++ lib.optionals withIntrospection [ + gobject-introspection ]; cmakeFlags = [ "-DENABLE_GTK_DOC=False" - ] ++ lib.optionals introspectionSupport [ - "-DGOBJECT_INTROSPECTION=True" - "-DICAL_GLIB_VAPI=True" + "-DGOBJECT_INTROSPECTION=${if withIntrospection then "True" else "False"}" + "-DICAL_GLIB_VAPI=${if withIntrospection then "True" else "False"}" ] ++ lib.optionals (stdenv.hostPlatform != stdenv.buildPlatform) [ "-DIMPORT_ICAL_GLIB_SRC_GENERATOR=${lib.getDev buildPackages.libical}/lib/cmake/LibIcal/IcalGlibSrcGenerator.cmake" ]; diff --git a/pkgs/development/libraries/libnih/default.nix b/pkgs/development/libraries/libnih/default.nix deleted file mode 100644 index fbe01bf4062..00000000000 --- a/pkgs/development/libraries/libnih/default.nix +++ /dev/null @@ -1,25 +0,0 @@ -{ lib, stdenv, fetchurl, pkg-config, dbus, expat }: - -let version = "1.0.3"; in - -stdenv.mkDerivation { - pname = "libnih"; - inherit version; - - src = fetchurl { - url = "https://code.launchpad.net/libnih/1.0/${version}/+download/libnih-${version}.tar.gz"; - sha256 = "01glc6y7z1g726zwpvp2zm79pyb37ki729jkh45akh35fpgp4xc9"; - }; - - nativeBuildInputs = [ pkg-config ]; - buildInputs = [ dbus expat ]; - - doCheck = false; # fails 1 of 17 test - - meta = { - description = "A small library for C application development"; - homepage = "https://launchpad.net/libnih"; - license = lib.licenses.gpl2; - platforms = lib.platforms.linux; - }; -} diff --git a/pkgs/development/libraries/libnotify/default.nix b/pkgs/development/libraries/libnotify/default.nix index de3f2141c2e..5cf79781a7d 100644 --- a/pkgs/development/libraries/libnotify/default.nix +++ b/pkgs/development/libraries/libnotify/default.nix @@ -14,13 +14,13 @@ stdenv.mkDerivation rec { pname = "libnotify"; - version = "0.7.11"; + version = "0.7.12"; outputs = [ "out" "man" "dev" ]; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "3VaC7GgiAznhHFFZt+ASIEoxjdGzaDoJxILKQhqwc3U="; + sha256 = "dEsrN1CBNfgmG3Vanevm4JrdQhrcdb3pMPbhmLcKtG4="; }; mesonFlags = [ diff --git a/pkgs/development/libraries/libscrypt/default.nix b/pkgs/development/libraries/libscrypt/default.nix index 68ef1afd2ee..6adc2124a3a 100644 --- a/pkgs/development/libraries/libscrypt/default.nix +++ b/pkgs/development/libraries/libscrypt/default.nix @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { sha256 = "sha256-QWWqC10bENemG5FYEog87tT7IxDaBJUDqu6j/sO3sYE="; }; - buildFlags = lib.optional stdenv.isDarwin "LDFLAGS= CFLAGS_EXTRA="; + buildFlags = lib.optional stdenv.isDarwin "LDFLAGS= LDFLAGS_EXTRA= CFLAGS_EXTRA="; installFlags = [ "PREFIX=$(out)" ]; installTargets = lib.optional stdenv.isDarwin "install-osx"; diff --git a/pkgs/development/libraries/libsurvive/default.nix b/pkgs/development/libraries/libsurvive/default.nix index 5685cfdbb4d..ddcbcb8222c 100644 --- a/pkgs/development/libraries/libsurvive/default.nix +++ b/pkgs/development/libraries/libsurvive/default.nix @@ -7,17 +7,20 @@ , libusb1 , blas , zlib +, eigen }: stdenv.mkDerivation rec { pname = "libsurvive"; - version = "0.4"; + version = "1.0"; src = fetchFromGitHub { owner = "cntools"; repo = pname; rev = "v${version}"; - sha256 = "sha256-atX7QsCjKGa6OVSApnx3seBvZv/mlpV3jWRB9+v7Emc="; + # Fixes 'Unknown CMake command "cnkalman_generate_code"' + fetchSubmodules = true; + sha256 = "sha256-I8Wx9avfMyDic+Bk/1IjzZiiHj+l3XqpRwxYbWlsG/Q="; }; nativeBuildInputs = [ cmake pkg-config ]; @@ -28,6 +31,7 @@ stdenv.mkDerivation rec { libusb1 blas zlib + eigen ]; meta = with lib; { diff --git a/pkgs/development/libraries/libwpe/default.nix b/pkgs/development/libraries/libwpe/default.nix index 66de5847d78..18134f18d99 100644 --- a/pkgs/development/libraries/libwpe/default.nix +++ b/pkgs/development/libraries/libwpe/default.nix @@ -6,7 +6,9 @@ , libxkbcommon , libGL , ninja -, libX11 }: +, libX11 +, webkitgtk +}: stdenv.mkDerivation rec { pname = "libwpe"; @@ -33,7 +35,7 @@ stdenv.mkDerivation rec { description = "General-purpose library for WPE WebKit"; license = licenses.bsd2; homepage = "https://wpewebkit.org"; - maintainers = with maintainers; [ matthewbauer ]; + maintainers = webkitgtk.meta.maintainers ++ (with maintainers; [ matthewbauer ]); platforms = platforms.linux; }; } diff --git a/pkgs/development/libraries/libwpe/fdo.nix b/pkgs/development/libraries/libwpe/fdo.nix index a711fab6314..df6a57d2d7f 100644 --- a/pkgs/development/libraries/libwpe/fdo.nix +++ b/pkgs/development/libraries/libwpe/fdo.nix @@ -10,7 +10,9 @@ , libwpe , libxkbcommon , libGL -, libX11 }: +, libX11 +, webkitgtk + }: stdenv.mkDerivation rec { pname = "wpebackend-fdo"; @@ -46,7 +48,7 @@ stdenv.mkDerivation rec { description = "Freedesktop.org backend for WPE WebKit"; license = licenses.bsd2; homepage = "https://wpewebkit.org"; - maintainers = with maintainers; [ matthewbauer ]; + maintainers = webkitgtk.meta.maintainers ++ (with maintainers; [ matthewbauer ]); platforms = platforms.linux; }; } diff --git a/pkgs/development/libraries/nghttp3/default.nix b/pkgs/development/libraries/nghttp3/default.nix index 6a2ae909a0c..32e3917e72c 100644 --- a/pkgs/development/libraries/nghttp3/default.nix +++ b/pkgs/development/libraries/nghttp3/default.nix @@ -1,19 +1,21 @@ { lib, stdenv, fetchFromGitHub -, autoreconfHook, pkg-config -, cunit, file, ncurses +, autoreconfHook, pkg-config, file +, cunit, ncurses }: stdenv.mkDerivation rec { pname = "nghttp3"; - version = "0.4.0"; + version = "0.4.1"; src = fetchFromGitHub { owner = "ngtcp2"; repo = pname; rev = "v${version}"; - sha256 = "sha256-toGTkgJLdSLNWCPJFpT63IxF3xANbvtkhJo5NUg/ZBg="; + sha256 = "sha256-1+0ln0J8dqHqmE+fsawhbfbbMNlCkDpJx4xomUuoHdE="; }; + outputs = [ "out" "dev" "doc" ]; + nativeBuildInputs = [ autoreconfHook pkg-config file ]; checkInputs = [ cunit ncurses ]; @@ -21,8 +23,6 @@ stdenv.mkDerivation rec { substituteInPlace ./configure --replace /usr/bin/file ${file}/bin/file ''; - outputs = [ "out" "dev" ]; - doCheck = true; enableParallelBuilding = true; diff --git a/pkgs/development/libraries/ngtcp2/default.nix b/pkgs/development/libraries/ngtcp2/default.nix index 4b08a918647..68dabef6d9f 100644 --- a/pkgs/development/libraries/ngtcp2/default.nix +++ b/pkgs/development/libraries/ngtcp2/default.nix @@ -1,21 +1,23 @@ { lib, stdenv, fetchFromGitHub -, autoreconfHook, pkg-config -, cunit, file, ncurses +, autoreconfHook, pkg-config, file , libev, nghttp3, quictls +, cunit, ncurses , withJemalloc ? false, jemalloc }: stdenv.mkDerivation rec { pname = "ngtcp2"; - version = "0.4.0"; + version = "0.5.0"; src = fetchFromGitHub { owner = "ngtcp2"; repo = pname; rev = "v${version}"; - sha256 = "sha256-nmVVK2lpz01hgSxPAMmBfF+nNVZu9PWRGzCWh/5yhj8="; + sha256 = "sha256-hpIGsQBJCOyaEqopdES/hRXc2makIERonUju9D/HvgE="; }; + outputs = [ "out" "dev" "doc" ]; + nativeBuildInputs = [ autoreconfHook pkg-config file ]; buildInputs = [ libev nghttp3 quictls ] ++ lib.optional withJemalloc jemalloc; checkInputs = [ cunit ncurses ]; @@ -24,8 +26,6 @@ stdenv.mkDerivation rec { substituteInPlace ./configure --replace /usr/bin/file ${file}/bin/file ''; - outputs = [ "out" "dev" ]; - doCheck = true; enableParallelBuilding = true; diff --git a/pkgs/development/libraries/opensaml-cpp/default.nix b/pkgs/development/libraries/opensaml-cpp/default.nix index 4f83f22856e..1f4ad96c297 100644 --- a/pkgs/development/libraries/opensaml-cpp/default.nix +++ b/pkgs/development/libraries/opensaml-cpp/default.nix @@ -19,6 +19,8 @@ stdenv.mkDerivation rec { configureFlags = [ "--with-xmltooling=${xml-tooling-c}" ]; + NIX_CFLAGS_COMPILE = [ "-std=c++14" ]; + enableParallelBuilding = true; meta = with lib; { diff --git a/pkgs/development/libraries/openssl/default.nix b/pkgs/development/libraries/openssl/default.nix index 26a89fe47a4..a0506dda1f6 100644 --- a/pkgs/development/libraries/openssl/default.nix +++ b/pkgs/development/libraries/openssl/default.nix @@ -7,6 +7,7 @@ # This will cause c_rehash to refer to perl via the environment, but otherwise # will produce a perfectly functional openssl binary and library. , withPerl ? stdenv.hostPlatform == stdenv.buildPlatform +, removeReferencesTo }: # Note: this package is used for bootstrapping fetchurl, and thus @@ -112,7 +113,11 @@ let # OpenSSL needs a specific `no-shared` configure flag. # See https://wiki.openssl.org/index.php/Compilation_and_Installation#Configure_Options # for a comprehensive list of configuration options. - ++ lib.optional (lib.versionAtLeast version "1.1.0" && static) "no-shared"; + ++ lib.optional (lib.versionAtLeast version "1.1.0" && static) "no-shared" + # This introduces a reference to the CTLOG_FILE which is undesired when + # trying to build binaries statically. + ++ lib.optional static "no-ct" + ; makeFlags = [ "MANDIR=$(man)/share/man" @@ -126,13 +131,16 @@ let enableParallelBuilding = true; postInstall = - lib.optionalString (!static) '' + (if static then '' + # OPENSSLDIR has a reference to self + ${removeReferencesTo}/bin/remove-references-to -t $out $out/lib/*.a + '' else '' # If we're building dynamic libraries, then don't install static # libraries. if [ -n "$(echo $out/lib/*.so $out/lib/*.dylib $out/lib/*.dll)" ]; then rm "$out/lib/"*.a fi - '' + lib.optionalString (!stdenv.hostPlatform.isWindows) + '') + lib.optionalString (!stdenv.hostPlatform.isWindows) # Fix bin/c_rehash's perl interpreter line # # - openssl 1_0_2: embeds a reference to buildPackages.perl diff --git a/pkgs/development/libraries/pango/default.nix b/pkgs/development/libraries/pango/default.nix index ee79d537059..13dd24b5482 100644 --- a/pkgs/development/libraries/pango/default.nix +++ b/pkgs/development/libraries/pango/default.nix @@ -24,14 +24,14 @@ stdenv.mkDerivation rec { pname = "pango"; - version = "1.50.6"; + version = "1.50.7"; outputs = [ "bin" "out" "dev" ] ++ lib.optionals withDocs [ "devdoc" ]; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "qZi882iBw6wgSV1AvOswT06qkXW9KWfIVlZDTL2v6Go="; + sha256 = "BHfzaaPUxpXfcpmmmJ3ABHVqf03ifuysQFxnkLfjrTM="; }; strictDeps = !withIntrospection; diff --git a/pkgs/development/libraries/pdal/2_3.nix b/pkgs/development/libraries/pdal/2_3.nix new file mode 100644 index 00000000000..094697ba1c1 --- /dev/null +++ b/pkgs/development/libraries/pdal/2_3.nix @@ -0,0 +1,89 @@ +{ lib, stdenv +, fetchFromGitHub +, fetchpatch +, cmake +, pkg-config +, openscenegraph +, curl +, gdal +, hdf5-cpp +, LASzip +, libe57format +, libgeotiff +, libxml2 +, postgresql +, tiledb +, xercesc +, zlib +, zstd +}: + +stdenv.mkDerivation rec { + pname = "pdal"; + version = "2.3.0"; + + src = fetchFromGitHub { + owner = "PDAL"; + repo = "PDAL"; + rev = version; + sha256 = "sha256-DKIraCyp8fcgnVp5dFrtQ4Wq96cQGC9SiAPLS6htUZc="; + }; + + patches = [ + # fix build with GCC 11 + (fetchpatch { + url = "https://github.com/PDAL/PDAL/commit/47e1eb2dc884d1b8c5caa8e3b48ef90f4f12c68d.patch"; + hash = "sha256-Ls2LkVpbwQAMt2Iuq0zq9D9l2eyP8m1IO3poCnbxGDU="; + }) + ]; + + nativeBuildInputs = [ + cmake + pkg-config + ]; + + buildInputs = [ + openscenegraph + curl + gdal + hdf5-cpp + LASzip + libe57format + libgeotiff + libxml2 + postgresql + tiledb + xercesc + zlib + zstd + ]; + + cmakeFlags = [ + "-DBUILD_PLUGIN_E57=ON" + "-DBUILD_PLUGIN_HDF=ON" + "-DBUILD_PLUGIN_PGPOINTCLOUD=ON" + "-DBUILD_PLUGIN_TILEDB=ON" + + # Plugins can probably not be made work easily: + "-DBUILD_PLUGIN_CPD=OFF" + "-DBUILD_PLUGIN_FBX=OFF" # Autodesk FBX SDK is gratis+proprietary; not packaged in nixpkgs + "-DBUILD_PLUGIN_GEOWAVE=OFF" + "-DBUILD_PLUGIN_I3S=OFF" + "-DBUILD_PLUGIN_ICEBRIDGE=OFF" + "-DBUILD_PLUGIN_MATLAB=OFF" + "-DBUILD_PLUGIN_MBIO=OFF" + "-DBUILD_PLUGIN_MRSID=OFF" + "-DBUILD_PLUGIN_NITF=OFF" + "-DBUILD_PLUGIN_OCI=OFF" + "-DBUILD_PLUGIN_RDBLIB=OFF" # Riegl rdblib is proprietary; not packaged in nixpkgs + "-DBUILD_PLUGIN_RIVLIB=OFF" + ]; + + meta = with lib; { + description = "PDAL is Point Data Abstraction Library. GDAL for point cloud data"; + homepage = "https://pdal.io"; + license = licenses.bsd3; + maintainers = with maintainers; [ nh2 ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/development/libraries/pffft/default.nix b/pkgs/development/libraries/pffft/default.nix new file mode 100644 index 00000000000..b68b6d48682 --- /dev/null +++ b/pkgs/development/libraries/pffft/default.nix @@ -0,0 +1,23 @@ +{ lib, stdenv, fetchFromGitHub, cmake }: + +stdenv.mkDerivation rec { + pname = "pffft"; + version = "unstable-2022-04-10"; + + src = fetchFromGitHub { + owner = "marton78"; + repo = pname; + rev = "08f5ed2618ac06d7dcc83d209d7253dc215274d5"; + sha256 = "sha256-9LfLQ17IRsbEwGQJZzhW2Av4en1KuJVicLrS2AyjUZY="; + }; + + nativeBuildInputs = [ cmake ]; + + meta = with lib; { + description = "Pretty Fast FFT (PFFFT) library"; + homepage = "https://github.com/marton78/pffft"; + license = licenses.bsd3; + maintainers = with maintainers; [ sikmir ]; + platforms = platforms.unix; + }; +} diff --git a/pkgs/development/libraries/podofo/default.nix b/pkgs/development/libraries/podofo/default.nix index ee99ab5de6f..c4aab614915 100644 --- a/pkgs/development/libraries/podofo/default.nix +++ b/pkgs/development/libraries/podofo/default.nix @@ -3,12 +3,12 @@ }: stdenv.mkDerivation rec { - version = "0.9.7"; + version = "0.9.8"; pname = "podofo"; src = fetchurl { url = "mirror://sourceforge/podofo/${pname}-${version}.tar.gz"; - sha256 = "1f0yvkx6nf99fp741w2y706d8bs9824x1z2gqm3rdy5fv8bfgwkw"; + sha256 = "sha256-XeYH4V8ZK4rZBzgwB1nYjeoPXM3OO/AASKDJMrxkUVQ="; }; outputs = [ "out" "dev" "lib" ]; diff --git a/pkgs/development/libraries/precice/default.nix b/pkgs/development/libraries/precice/default.nix index e700a5f9f11..60c026b3600 100644 --- a/pkgs/development/libraries/precice/default.nix +++ b/pkgs/development/libraries/precice/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "precice"; - version = "2.3.0"; + version = "2.4.0"; src = fetchFromGitHub { owner = "precice"; repo = pname; rev = "v${version}"; - sha256 = "sha256:0p8d2xf4bl41b30yp38sqyp4fipwgcdhl0khxcv5g69fxvz2i2il"; + sha256 = "0qmwdxpbmy4dvjxav3dls18qns734j0yfvxvjrh1nnkk36qhfp3q"; }; cmakeFlags = [ diff --git a/pkgs/development/libraries/prometheus-client-c/default.nix b/pkgs/development/libraries/prometheus-client-c/default.nix index 9b18b25c726..938d16d3776 100644 --- a/pkgs/development/libraries/prometheus-client-c/default.nix +++ b/pkgs/development/libraries/prometheus-client-c/default.nix @@ -43,6 +43,13 @@ let ) ]; + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: CMakeFiles/prom.dir/src/prom_process_stat.c.o:(.bss+0x0): multiple definition of + # `prom_process_start_time_seconds'; CMakeFiles/prom.dir/src/prom_collector.c.o:(.bss+0x0): first defined here + # Should be fixed in 1.2.0 and later: https://github.com/digitalocean/prometheus-client-c/pull/25 + NIX_CFLAGS_COMPILE = "-fcommon"; + preConfigure = '' cd ${subdir} ''; diff --git a/pkgs/development/libraries/qtmpris/default.nix b/pkgs/development/libraries/qtmpris/default.nix new file mode 100644 index 00000000000..ef595efa731 --- /dev/null +++ b/pkgs/development/libraries/qtmpris/default.nix @@ -0,0 +1,40 @@ +{ lib +, mkDerivation +, fetchFromGitHub +, qmake +, qtbase +}: + +mkDerivation rec { + pname = "qtmpris"; + version = "1.0.6"; + + src = fetchFromGitHub { + owner = "sailfishos"; + repo = "qtmpris"; + rev = version; + hash = "sha256-kuM8hUdsa7N+eLDbwYw3ay+PWxg35zcTBOvGow1NlzI="; + }; + + postPatch = '' + substituteInPlace src/src.pro \ + --replace '$$[QT_INSTALL_LIBS]' "$out/lib" \ + --replace '$$[QT_INSTALL_HEADERS]' "$out/include" \ + --replace '$$[QMAKE_MKSPECS]' "$out/mkspecs" + ''; + + nativeBuildInputs = [ + qmake + ]; + + buildInputs = [ + qtbase + ]; + + meta = { + description = "Qt and QML MPRIS interface and adaptor"; + homepage = "https://github.com/sailfishos/qtmpris"; + license = lib.licenses.lgpl21Plus; + maintainers = with lib.maintainers; [ dotlambda ]; + }; +} diff --git a/pkgs/development/libraries/quazip/default.nix b/pkgs/development/libraries/quazip/default.nix index e670d6bd916..e42ec58d127 100644 --- a/pkgs/development/libraries/quazip/default.nix +++ b/pkgs/development/libraries/quazip/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "quazip"; - version = "1.2"; + version = "1.3"; src = fetchFromGitHub { owner = "stachenov"; repo = pname; rev = "v${version}"; - sha256 = "sha256-fsEMmbatTB1s8JnUYE18/vj2FZ2b40zHoOlL2OVplLc="; + sha256 = "sha256-CtjjHJgUEmGg066D/wey3wyq8boX1sJiP7fUNmpbT1o="; }; buildInputs = [ zlib qtbase ]; diff --git a/pkgs/development/libraries/quictls/default.nix b/pkgs/development/libraries/quictls/default.nix index 2cc043ee0c1..0f85836a9c6 100644 --- a/pkgs/development/libraries/quictls/default.nix +++ b/pkgs/development/libraries/quictls/default.nix @@ -11,13 +11,13 @@ stdenv.mkDerivation rec { pname = "quictls"; - version = "3.0.2+quick_unstable-2022-03.15"; + version = "3.0.3+quick_unstable-2022-05.04"; src = fetchFromGitHub { owner = "quictls"; repo = "openssl"; - rev = "7f2ab56a2b842b8e6fefc7b9d20eb5ff9c6ef151"; - sha256 = "sha256-We4ow0mGJFXqYM4PqbGn8qY5IYH/MtNaefrSaJreoRA="; + rev = "368c9d581b17f0bbe425f8dedeaa7b864a7b29ce"; + sha256 = "sha256-W3bILxhyeziWQNZUHUg/D9eV8LnmHJqEFwyzWjJrRuc="; }; patches = [ @@ -156,7 +156,7 @@ stdenv.mkDerivation rec { ''; meta = with lib; { - homepage = "https://quictls.github.io/openssl/"; + homepage = "https://quictls.github.io"; description = "TLS/SSL and crypto library with QUIC APIs"; license = licenses.openssl; platforms = platforms.all; diff --git a/pkgs/development/libraries/rtrlib/default.nix b/pkgs/development/libraries/rtrlib/default.nix new file mode 100644 index 00000000000..bb0aec308ae --- /dev/null +++ b/pkgs/development/libraries/rtrlib/default.nix @@ -0,0 +1,24 @@ +{ lib, fetchFromGitHub, stdenv, cmake, libssh, openssl }: + +stdenv.mkDerivation rec { + pname = "rtrlib"; + version = "0.8.0"; + + src = fetchFromGitHub { + repo = pname; + owner = "rtrlib"; + rev = "v${version}"; + sha256 = "sha256-ISb4ojcDvXY/88GbFMrA5V5+SGE6CmE5D+pokDTwotQ="; + }; + + nativeBuildInputs = [ cmake ]; + buildInputs = [ libssh openssl ]; + + meta = with lib; { + description = "An open-source C implementation of the RPKI/Router Protocol client"; + homepage = "https://github.com/rtrlib/rtrlib"; + license = licenses.mit; + maintainers = with maintainers; [ Anillc ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/development/libraries/rubberband/default.nix b/pkgs/development/libraries/rubberband/default.nix index 1e70d6e0dbe..5cb5da3224f 100644 --- a/pkgs/development/libraries/rubberband/default.nix +++ b/pkgs/development/libraries/rubberband/default.nix @@ -1,16 +1,16 @@ { lib, stdenv, fetchurl, pkg-config, libsamplerate, libsndfile, fftw -, vamp-plugin-sdk, ladspaH }: +, vamp-plugin-sdk, ladspaH, meson, ninja }: stdenv.mkDerivation rec { pname = "rubberband"; - version = "1.9.0"; + version = "2.0.2"; src = fetchurl { url = "https://breakfastquay.com/files/releases/${pname}-${version}.tar.bz2"; - sha256 = "4f5b9509364ea876b4052fc390c079a3ad4ab63a2683aad09662fb905c2dc026"; + sha256 = "sha256-uerAJ+eXeJrplhHJ6urxw6RMyAT5yKBEGg0dJvPWvfk="; }; - nativeBuildInputs = [ pkg-config ]; + nativeBuildInputs = [ pkg-config meson ninja ]; buildInputs = [ libsamplerate libsndfile fftw vamp-plugin-sdk ladspaH ]; makeFlags = [ "AR:=$(AR)" ]; diff --git a/pkgs/development/libraries/science/math/lrs/default.nix b/pkgs/development/libraries/science/math/lrs/default.nix index 063fead1165..ae5beb0f09e 100644 --- a/pkgs/development/libraries/science/math/lrs/default.nix +++ b/pkgs/development/libraries/science/math/lrs/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "lrs"; - version = "7.0"; + version = "7.2"; src = fetchurl { - url = "http://cgm.cs.mcgill.ca/~avis/C/lrslib/archive/lrslib-070.tar.gz"; - sha256 = "1zjdmkjracz695k73c2pvipc0skpyn1wzagkhilsvcw9pqljpwg9"; + url = "http://cgm.cs.mcgill.ca/~avis/C/lrslib/archive/lrslib-072.tar.gz"; + sha256 = "1w1jsnfgny8cihndr5gfm99pvwp48qsvxkqfsi2q87gd3m57aj7w"; }; buildInputs = [ gmp ]; diff --git a/pkgs/development/libraries/science/math/primecount/default.nix b/pkgs/development/libraries/science/math/primecount/default.nix deleted file mode 100644 index e1390ce6416..00000000000 --- a/pkgs/development/libraries/science/math/primecount/default.nix +++ /dev/null @@ -1,33 +0,0 @@ -{ lib, stdenv, fetchFromGitHub, cmake, primesieve }: - -stdenv.mkDerivation rec { - pname = "primecount"; - version = "7.2"; - - nativeBuildInputs = [ cmake ]; - - buildInputs = [ primesieve ]; - - src = fetchFromGitHub { - owner = "kimwalisch"; - repo = "primecount"; - rev = "v${version}"; - sha256 = "sha256-/Cb/HkD4UQ9gXsRpvRiEuQBoRd0THxNHsBaAAa+CqQo="; - }; - - cmakeFlags = [ - "-DBUILD_STATIC_LIBS=OFF" - "-DBUILD_SHARED_LIBS=ON" - "-DBUILD_TESTS=ON" - "-DBUILD_PRIMECOUNT=ON" - "-DBUILD_LIBPRIMESIEVE=ON" - ]; - - meta = with lib; { - description = "Fast prime counting function implementations"; - homepage = "https://github.com/kimwalisch/primecount"; - license = licenses.bsd2; - platforms = platforms.unix; - maintainers = teams.sage.members; - }; -} diff --git a/pkgs/development/libraries/science/math/primesieve/default.nix b/pkgs/development/libraries/science/math/primesieve/default.nix deleted file mode 100644 index 0cf263218a3..00000000000 --- a/pkgs/development/libraries/science/math/primesieve/default.nix +++ /dev/null @@ -1,23 +0,0 @@ -{ lib, stdenv, fetchFromGitHub, cmake }: - -stdenv.mkDerivation rec { - pname = "primesieve"; - version = "7.8"; - - nativeBuildInputs = [ cmake ]; - - src = fetchFromGitHub { - owner = "kimwalisch"; - repo = "primesieve"; - rev = "v${version}"; - sha256 = "sha256-M35CP/xEyC7mEh84kaGsgfsDI9fnanHraNPgTvpqimI="; - }; - - meta = with lib; { - description = "Fast C/C++ prime number generator"; - homepage = "https://primesieve.org/"; - license = licenses.bsd2; - platforms = platforms.unix; - maintainers = with maintainers; [ abbradar ]; - }; -} diff --git a/pkgs/development/libraries/sealcurses/default.nix b/pkgs/development/libraries/sealcurses/default.nix index 21ee2a782a2..bde530dd9d7 100644 --- a/pkgs/development/libraries/sealcurses/default.nix +++ b/pkgs/development/libraries/sealcurses/default.nix @@ -2,14 +2,14 @@ stdenv.mkDerivation rec { pname = "sealcurses"; - version = "unstable-2022-04-28"; # No release yet + version = "unstable-2022-05-18"; # No release yet src = fetchFromGitea { domain = "git.skyjake.fi"; owner = "skyjake"; repo = pname; - rev = "abf27cfd2567a0765aaa115cabab0abb7f862253"; - hash = "sha256-c4zi/orHyr1hkuEisqZ9V8SaiH1IoxIbeGMrLBEkZ0A="; + rev = "417d77d790ede990b4c149f21c58fd13b8f273cc"; + hash = "sha256-yOrJYy9vBv5n8yK6u7tfMq56LBBw5rmhUjORINW8gxo="; }; nativeBuildInputs = [ cmake pkg-config ]; diff --git a/pkgs/development/libraries/shibboleth-sp/default.nix b/pkgs/development/libraries/shibboleth-sp/default.nix index f3b80c0b548..5dd997352f1 100644 --- a/pkgs/development/libraries/shibboleth-sp/default.nix +++ b/pkgs/development/libraries/shibboleth-sp/default.nix @@ -20,6 +20,8 @@ stdenv.mkDerivation rec { "--with-fastcgi" ]; + NIX_CFLAGS_COMPILE = [ "-std=c++14" ]; + enableParallelBuilding = true; meta = with lib; { diff --git a/pkgs/development/libraries/spdk/default.nix b/pkgs/development/libraries/spdk/default.nix index e4884b85b4a..23464990d86 100644 --- a/pkgs/development/libraries/spdk/default.nix +++ b/pkgs/development/libraries/spdk/default.nix @@ -10,9 +10,19 @@ , libuuid , numactl , openssl +, fetchurl }: -stdenv.mkDerivation rec { +let + # The old version has some CVEs howver they should not affect SPDK's usage of the framework: https://github.com/NixOS/nixpkgs/pull/171648#issuecomment-1121964568 + dpdk' = dpdk.overrideAttrs (old: rec { + name = "dpdk-21.11"; + src = fetchurl { + url = "https://fast.dpdk.org/rel/${name}.tar.xz"; + sha256 = "sha256-Mkbj7WjuKzaaXYviwGzxCKZp4Vf01Bxby7sha/Wr06E="; + }; + }); +in stdenv.mkDerivation rec { pname = "spdk"; version = "21.10"; @@ -40,7 +50,7 @@ stdenv.mkDerivation rec { ]; buildInputs = [ - cunit dpdk libaio libbsd libuuid numactl openssl ncurses + cunit dpdk' libaio libbsd libuuid numactl openssl ncurses ]; postPatch = '' @@ -49,7 +59,7 @@ stdenv.mkDerivation rec { enableParallelBuilding = true; - configureFlags = [ "--with-dpdk=${dpdk}" ]; + configureFlags = [ "--with-dpdk=${dpdk'}" ]; NIX_CFLAGS_COMPILE = "-mssse3"; # Necessary to compile. # otherwise does not find strncpy when compiling diff --git a/pkgs/development/libraries/sqlite/default.nix b/pkgs/development/libraries/sqlite/default.nix index 726ccff02bb..7677406874a 100644 --- a/pkgs/development/libraries/sqlite/default.nix +++ b/pkgs/development/libraries/sqlite/default.nix @@ -12,13 +12,13 @@ in stdenv.mkDerivation rec { pname = "sqlite${optionalString interactive "-interactive"}"; - version = "3.38.3"; + version = "3.38.5"; # nixpkgs-update: no auto update # NB! Make sure to update ./tools.nix src (in the same directory). src = fetchurl { url = "https://sqlite.org/2022/sqlite-autoconf-${archiveVersion version}.tar.gz"; - sha256 = "sha256-YfLdk6LjjDNGi3EllnwyGL+fTdg2Xe9gJeMU+QXclC4="; + sha256 = "sha256-WvB96YK6ZY/ZGgMXDJRfmclx9pVbx53zJmVENz45hpw="; }; outputs = [ "bin" "dev" "out" ]; diff --git a/pkgs/development/libraries/sqlite/tools.nix b/pkgs/development/libraries/sqlite/tools.nix index d112515c8e9..b804fcbfd65 100644 --- a/pkgs/development/libraries/sqlite/tools.nix +++ b/pkgs/development/libraries/sqlite/tools.nix @@ -4,12 +4,12 @@ let archiveVersion = import ./archive-version.nix lib; mkTool = { pname, makeTarget, description, homepage, mainProgram }: stdenv.mkDerivation rec { inherit pname; - version = "3.38.3"; + version = "3.38.5"; # nixpkgs-update: no auto update src = assert version == sqlite.version; fetchurl { url = "https://sqlite.org/2022/sqlite-src-${archiveVersion version}.zip"; - sha256 = "sha256-oQTUk+CEAGvXT/H/esLrKzh8fAo7Y7pv6i+vtBGDE68="; + sha256 = "sha256-ZQO7WeOeyGYwg2lpQOyBjNVVUZbmylQ9QClEDMp7ANk="; }; nativeBuildInputs = [ unzip ]; diff --git a/pkgs/development/libraries/tracker-miners/default.nix b/pkgs/development/libraries/tracker-miners/default.nix index 7c3e495d54a..b4e2e3b7871 100644 --- a/pkgs/development/libraries/tracker-miners/default.nix +++ b/pkgs/development/libraries/tracker-miners/default.nix @@ -80,7 +80,11 @@ stdenv.mkDerivation rec { totem-pl-parser tracker gst_all_1.gst-plugins-base + gst_all_1.gst-plugins-good + gst_all_1.gst-plugins-bad + gst_all_1.gst-plugins-ugly gst_all_1.gstreamer + gst_all_1.gst-libav icu json-glib libcue diff --git a/pkgs/development/libraries/ucommon/default.nix b/pkgs/development/libraries/ucommon/default.nix index 7306243bca9..2ecf7729f4b 100644 --- a/pkgs/development/libraries/ucommon/default.nix +++ b/pkgs/development/libraries/ucommon/default.nix @@ -20,6 +20,9 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ pkg-config ]; + # use C++14 Standard until error handling code gets updated upstream + CXXFLAGS = [ "-std=c++14" ]; + # disable flaky networking test postPatch = '' substituteInPlace test/stream.cpp \ diff --git a/pkgs/development/libraries/v8/default.nix b/pkgs/development/libraries/v8/default.nix index 1d2911c1313..2b56d2e5dcf 100644 --- a/pkgs/development/libraries/v8/default.nix +++ b/pkgs/development/libraries/v8/default.nix @@ -165,5 +165,7 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ cstrahan proglodyte matthewbauer ]; platforms = platforms.unix; license = licenses.bsd3; + # Fails to build on Darwin, see https://github.com/NixOS/nixpkgs/issues/158076 + broken = stdenv.isDarwin; }; } diff --git a/pkgs/development/libraries/webkitgtk/default.nix b/pkgs/development/libraries/webkitgtk/default.nix index 2359625a4f7..d111ee8ed0b 100644 --- a/pkgs/development/libraries/webkitgtk/default.nix +++ b/pkgs/development/libraries/webkitgtk/default.nix @@ -19,6 +19,8 @@ , gtk3 , wayland , libwebp +, libwpe +, libwpe-fdo , enchant2 , xorg , libxkbcommon @@ -65,7 +67,7 @@ stdenv.mkDerivation rec { pname = "webkitgtk"; - version = "2.36.1"; + version = "2.36.2"; outputs = [ "out" "dev" ]; @@ -73,7 +75,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "https://webkitgtk.org/releases/${pname}-${version}.tar.xz"; - sha256 = "sha256-AUnqX7HSDyqZgWd9RclSoEczAAHqJKjcKQNSOfEsDI8="; + sha256 = "/pO920oCwONvkm77boHSiv0oi4gk9sXPanXPQCKOAI4="; }; patches = lib.optionals stdenv.isLinux [ @@ -82,7 +84,15 @@ stdenv.mkDerivation rec { inherit (builtins) storeDir; inherit (addOpenGLRunpath) driverLink; }) + ./libglvnd-headers.patch + + # Hardcode path to WPE backend + # https://github.com/NixOS/nixpkgs/issues/110468 + (substituteAll { + src = ./fdo-backend-path.patch; + wpebackend_fdo = libwpe-fdo; + }) ]; preConfigure = lib.optionalString (stdenv.hostPlatform != stdenv.buildPlatform) '' @@ -160,6 +170,8 @@ stdenv.mkDerivation rec { libseccomp libmanette wayland + libwpe + libwpe-fdo xdg-dbus-proxy ] ++ lib.optionals systemdSupport [ systemd @@ -180,7 +192,6 @@ stdenv.mkDerivation rec { "-DENABLE_INTROSPECTION=ON" "-DPORT=GTK" "-DUSE_LIBHYPHEN=OFF" - "-DUSE_WPE_RENDERER=OFF" "-DUSE_SOUP2=${cmakeBool (lib.versions.major libsoup.version == "2")}" "-DUSE_LIBSECRET=${cmakeBool withLibsecret}" ] ++ lib.optionals stdenv.isDarwin [ diff --git a/pkgs/development/libraries/webkitgtk/fdo-backend-path.patch b/pkgs/development/libraries/webkitgtk/fdo-backend-path.patch new file mode 100644 index 00000000000..9ddef67f1c1 --- /dev/null +++ b/pkgs/development/libraries/webkitgtk/fdo-backend-path.patch @@ -0,0 +1,11 @@ +--- a/Source/WebKit/UIProcess/glib/WebProcessPoolGLib.cpp ++++ b/Source/WebKit/UIProcess/glib/WebProcessPoolGLib.cpp +@@ -89,7 +89,7 @@ + #if PLATFORM(WAYLAND) + if (WebCore::PlatformDisplay::sharedDisplay().type() == WebCore::PlatformDisplay::Type::Wayland) { + #if USE(WPE_RENDERER) +- wpe_loader_init("libWPEBackend-fdo-1.0.so.1"); ++ wpe_loader_init("@wpebackend_fdo@/lib/libWPEBackend-fdo-1.0.so.1"); + if (AcceleratedBackingStoreWayland::checkRequirements()) { + parameters.hostClientFileDescriptor = IPC::Attachment(UnixFileDescriptor(wpe_renderer_host_create_client(), UnixFileDescriptor::Adopt)); + parameters.implementationLibraryName = FileSystem::fileSystemRepresentation(String::fromLatin1(wpe_loader_get_loaded_implementation_library_name())); diff --git a/pkgs/development/libraries/xdg-dbus-proxy/default.nix b/pkgs/development/libraries/xdg-dbus-proxy/default.nix index 95373934a47..b027c95a7e4 100644 --- a/pkgs/development/libraries/xdg-dbus-proxy/default.nix +++ b/pkgs/development/libraries/xdg-dbus-proxy/default.nix @@ -1,8 +1,11 @@ -{ lib, stdenv +{ stdenv +, lib , fetchurl +, meson +, ninja , pkg-config , libxslt -, docbook_xsl +, docbook-xsl-nons , docbook_xml_dtd_43 , dbus , glib @@ -10,17 +13,19 @@ stdenv.mkDerivation rec { pname = "xdg-dbus-proxy"; - version = "0.1.3"; + version = "0.1.4"; src = fetchurl { url = "https://github.com/flatpak/xdg-dbus-proxy/releases/download/${version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-A7XSjKh5JT3bvOMQmJCb7MoUleqBGmN3pJLijxbAm5s="; + sha256 = "sha256-HsDqtT0eSZZtciNSvP1RrEAtzlGQuu3HSahUHnYWcKs="; }; nativeBuildInputs = [ + meson + ninja pkg-config libxslt - docbook_xsl + docbook-xsl-nons docbook_xml_dtd_43 ]; @@ -32,10 +37,6 @@ stdenv.mkDerivation rec { dbus ]; - configureFlags = [ - "--enable-man" - ]; - # dbus[2345]: Failed to start message bus: Failed to open "/etc/dbus-1/session.conf": No such file or directory doCheck = false; diff --git a/pkgs/development/libraries/xml-tooling-c/default.nix b/pkgs/development/libraries/xml-tooling-c/default.nix index 9cf3ddb9219..39e25241c94 100644 --- a/pkgs/development/libraries/xml-tooling-c/default.nix +++ b/pkgs/development/libraries/xml-tooling-c/default.nix @@ -15,6 +15,8 @@ stdenv.mkDerivation rec { buildInputs = [ boost curl openssl log4shib xercesc xml-security-c ]; nativeBuildInputs = [ autoreconfHook pkg-config ]; + NIX_CFLAGS_COMPILE = [ "-std=c++14" ]; + enableParallelBuilding = true; meta = with lib; { diff --git a/pkgs/development/misc/rpiboot/default.nix b/pkgs/development/misc/rpiboot/default.nix index 941c7ce904e..35fb41d0a8d 100644 --- a/pkgs/development/misc/rpiboot/default.nix +++ b/pkgs/development/misc/rpiboot/default.nix @@ -29,6 +29,6 @@ stdenv.mkDerivation rec { description = "Utility to boot a Raspberry Pi CM/CM3/CM4/Zero over USB"; license = licenses.asl20; maintainers = with maintainers; [ cartr ]; - platforms = [ "aarch64-linux" "armv7l-linux" "armv6l-linux" "x86_64-linux" ]; + platforms = [ "aarch64-linux" "aarch64-darwin" "armv7l-linux" "armv6l-linux" "x86_64-linux" "x86_64-darwin" ]; }; } diff --git a/pkgs/development/nim-packages/jsony/default.nix b/pkgs/development/nim-packages/jsony/default.nix index 9a4808e3636..bf8cf5d5c7f 100644 --- a/pkgs/development/nim-packages/jsony/default.nix +++ b/pkgs/development/nim-packages/jsony/default.nix @@ -2,13 +2,13 @@ buildNimPackage rec { pname = "jsony"; - version = "1.1.3"; + version = "d0e69bddf83874e15b5c2f52f8b1386ac080b443"; src = fetchFromGitHub { owner = "treeform"; repo = pname; rev = version; - hash = "sha256-jtUCoqwCmE536Kpv/vZxGgqiHyReZf1WOiBdUzmMhM4="; + sha256 = "1p250wb97nzz2g0vvq6mn521fx7sn1jpk1ralbzqh5q8clh4g7wr"; }; doCheck = true; diff --git a/pkgs/development/nim-packages/supersnappy/default.nix b/pkgs/development/nim-packages/supersnappy/default.nix index 471543eca41..f2f8205d828 100644 --- a/pkgs/development/nim-packages/supersnappy/default.nix +++ b/pkgs/development/nim-packages/supersnappy/default.nix @@ -3,6 +3,6 @@ fetchFromGitHub { owner = "guzba"; repo = "supersnappy"; - rev = "1.1.5"; - sha256 = "1y26sgnszvdf5sn7j0jx2dpd4i03mvbk9i9ni9kbyrs798bjwi6z"; + rev = "2.1.1"; + sha256 = "03df1qgrbp84swhqy12ansyn951lkaw0kf1arbnki4fkgdnqdamf"; } diff --git a/pkgs/development/node-packages/default.nix b/pkgs/development/node-packages/default.nix index b2da0f16eb5..0fcd508012e 100644 --- a/pkgs/development/node-packages/default.nix +++ b/pkgs/development/node-packages/default.nix @@ -1,537 +1,23 @@ -{ pkgs, nodejs, stdenv, applyPatches, fetchFromGitHub, fetchpatch, fetchurl, nixosTests }: +{ pkgs, lib, nodejs, stdenv}: let - inherit (pkgs) lib; - since = version: pkgs.lib.versionAtLeast nodejs.version version; - before = version: pkgs.lib.versionOlder nodejs.version version; - super = import ./composition.nix { + inherit (lib) composeManyExtensions extends makeExtensible mapAttrs; + + nodePackages = final: import ./composition.nix { inherit pkgs nodejs; inherit (stdenv.hostPlatform) system; }; - self = super // { - "@angular/cli" = super."@angular/cli".override { - prePatch = '' - export NG_CLI_ANALYTICS=false - ''; - }; - - autoprefixer = super.autoprefixer.override { - nativeBuildInputs = [ pkgs.makeWrapper ]; - postInstall = '' - wrapProgram "$out/bin/autoprefixer" \ - --prefix NODE_PATH : ${self.postcss}/lib/node_modules - ''; - passthru.tests = { - simple-execution = pkgs.callPackage ./package-tests/autoprefixer.nix { inherit (self) autoprefixer; }; - }; - }; - - aws-azure-login = super.aws-azure-login.override { - meta.platforms = pkgs.lib.platforms.linux; - nativeBuildInputs = [ pkgs.makeWrapper ]; - prePatch = '' - export PUPPETEER_SKIP_CHROMIUM_DOWNLOAD=1 - ''; - postInstall = '' - wrapProgram $out/bin/aws-azure-login \ - --set PUPPETEER_EXECUTABLE_PATH ${pkgs.chromium}/bin/chromium - ''; - }; - - bower2nix = super.bower2nix.override { - buildInputs = [ pkgs.makeWrapper ]; - postInstall = '' - for prog in bower2nix fetch-bower; do - wrapProgram "$out/bin/$prog" --prefix PATH : ${pkgs.lib.makeBinPath [ pkgs.git pkgs.nix ]} - done - ''; - }; - - carbon-now-cli = super.carbon-now-cli.override { - nativeBuildInputs = [ pkgs.makeWrapper ]; - prePatch = '' - export PUPPETEER_SKIP_CHROMIUM_DOWNLOAD=1 - ''; - postInstall = '' - wrapProgram $out/bin/carbon-now \ - --set PUPPETEER_EXECUTABLE_PATH ${pkgs.chromium.outPath}/bin/chromium - ''; - }; - - deltachat-desktop = super."deltachat-desktop-../../applications/networking/instant-messengers/deltachat-desktop".override { - meta.broken = true; # use the top-level package instead - }; - - fast-cli = super.fast-cli.override { - nativeBuildInputs = [ pkgs.makeWrapper ]; - prePatch = '' - export PUPPETEER_SKIP_CHROMIUM_DOWNLOAD=1 - ''; - postInstall = '' - wrapProgram $out/bin/fast \ - --set PUPPETEER_EXECUTABLE_PATH ${pkgs.chromium.outPath}/bin/chromium - ''; - }; - - hyperspace-cli = super."@hyperspace/cli".override { - nativeBuildInputs = with pkgs; [ - makeWrapper - libtool - autoconf - automake - ]; - buildInputs = with pkgs; [ - nodePackages.node-gyp-build - nodejs - ]; - postInstall = '' - wrapProgram "$out/bin/hyp" --prefix PATH : ${ - pkgs.lib.makeBinPath [ pkgs.nodejs ] - } - ''; - }; - - mdctl-cli = super."@medable/mdctl-cli".override { - nativeBuildInputs = with pkgs; with darwin.apple_sdk.frameworks; [ - glib - libsecret - pkg-config - ] ++ lib.optionals stdenv.isDarwin [ - AppKit - Security - ]; - buildInputs = with pkgs; [ - nodePackages.node-gyp-build - nodePackages.node-pre-gyp - nodejs - ]; - }; - - coc-imselect = super.coc-imselect.override { - meta.broken = since "10"; - }; - - dat = super.dat.override { - buildInputs = [ self.node-gyp-build pkgs.libtool pkgs.autoconf pkgs.automake ]; - meta.broken = since "12"; - }; - - # NOTE: this is a stub package to fetch npm dependencies for - # ../../applications/video/epgstation - epgstation = super."epgstation-../../applications/video/epgstation".override (drv: { - meta = drv.meta // { - platforms = pkgs.lib.platforms.none; - }; - }); - - # NOTE: this is a stub package to fetch npm dependencies for - # ../../applications/video/epgstation/client - epgstation-client = super."epgstation-client-../../applications/video/epgstation/client".override (drv: { - meta = drv.meta // { - platforms = pkgs.lib.platforms.none; - }; - }); - - bitwarden-cli = super."@bitwarden/cli".override (drv: { - name = "bitwarden-cli-${drv.version}"; - meta.mainProgram = "bw"; - }); - - flood = super.flood.override { - buildInputs = [ self.node-pre-gyp ]; - meta.mainProgram = "flood"; - }; - - expo-cli = super."expo-cli".override (attrs: { - # The traveling-fastlane-darwin optional dependency aborts build on Linux. - dependencies = builtins.filter (d: d.packageName != "@expo/traveling-fastlane-${if stdenv.isLinux then "darwin" else "linux"}") attrs.dependencies; - }); - - "@electron-forge/cli" = super."@electron-forge/cli".override { - buildInputs = [ self.node-pre-gyp self.rimraf ]; - }; - - git-ssb = super.git-ssb.override { - buildInputs = [ self.node-gyp-build ]; - meta.broken = since "10"; - }; - - hsd = super.hsd.override { - buildInputs = [ self.node-gyp-build pkgs.unbound ]; - }; - - ijavascript = super.ijavascript.override (oldAttrs: { - preRebuild = '' - export NPM_CONFIG_ZMQ_EXTERNAL=true - ''; - buildInputs = oldAttrs.buildInputs ++ [ self.node-gyp-build pkgs.zeromq ]; - }); - - insect = super.insect.override (drv: { - nativeBuildInputs = drv.nativeBuildInputs or [] ++ [ pkgs.psc-package self.pulp ]; - }); - - intelephense = super.intelephense.override { - meta.license = pkgs.lib.licenses.unfree; - }; - - jsonplaceholder = super.jsonplaceholder.override (drv: { - buildInputs = [ nodejs ]; - postInstall = '' - exe=$out/bin/jsonplaceholder - mkdir -p $out/bin - cat >$exe <<EOF - #!${pkgs.runtimeShell} - exec -a jsonplaceholder ${nodejs}/bin/node $out/lib/node_modules/jsonplaceholder/index.js - EOF - chmod a+x $exe - ''; - }); - - makam = super.makam.override { - buildInputs = [ pkgs.nodejs pkgs.makeWrapper ]; - postFixup = '' - wrapProgram "$out/bin/makam" --prefix PATH : ${pkgs.lib.makeBinPath [ pkgs.nodejs ]} - ${ - if stdenv.isLinux - then "patchelf --set-interpreter ${stdenv.glibc}/lib/ld-linux-x86-64.so.2 \"$out/lib/node_modules/makam/makam-bin-linux64\"" - else "" - } - ''; - }; - - manta = super.manta.override { - nativeBuildInputs = with pkgs; [ nodejs-14_x installShellFiles ]; - postInstall = '' - # create completions, following upstream procedure https://github.com/joyent/node-manta/blob/v5.2.3/Makefile#L85-L91 - completion_cmds=$(find ./bin -type f -printf "%f\n") - - node ./lib/create_client.js - for cmd in $completion_cmds; do - installShellCompletion --cmd $cmd --bash <(./bin/$cmd --completion) - done - ''; - }; - - markdownlint-cli = super.markdownlint-cli.override { - meta.mainProgram = "markdownlint"; - }; - - node-gyp = super.node-gyp.override { - nativeBuildInputs = [ pkgs.makeWrapper ]; - # Teach node-gyp to use nodejs headers locally rather that download them form https://nodejs.org. - # This is important when build nodejs packages in sandbox. - postInstall = '' - wrapProgram "$out/bin/node-gyp" \ - --set npm_config_nodedir ${nodejs} - ''; - }; - - near-cli = super.near-cli.override { - nativeBuildInputs = with pkgs; [ - libusb1 - nodePackages.prebuild-install - nodePackages.node-gyp-build - pkg-config - ]; - }; - - node-inspector = super.node-inspector.override { - buildInputs = [ self.node-pre-gyp ]; - meta.broken = since "10"; - }; - - node2nix = super.node2nix.override { - buildInputs = [ pkgs.makeWrapper ]; - # We need to use master because of a fix that replaces git:// url to https://. - src = fetchFromGitHub { - owner = "svanderburg"; - repo = "node2nix"; - rev = "68f5735f9a56737e3fedceb182705985e3ab8799"; - sha256 = "sha256-NK6gDTkGx0GG7yPTwgtFC4ttQZPfcLaLp8W8OOMO6bg="; - }; - - postInstall = '' - wrapProgram "$out/bin/node2nix" --prefix PATH : ${pkgs.lib.makeBinPath [ pkgs.nix ]} - ''; - }; - - node-red = super.node-red.override { - buildInputs = [ self.node-pre-gyp ]; - }; - - mermaid-cli = super."@mermaid-js/mermaid-cli".override ( - if stdenv.isDarwin - then {} - else { - nativeBuildInputs = [ pkgs.makeWrapper ]; - prePatch = '' - export PUPPETEER_SKIP_CHROMIUM_DOWNLOAD=1 - ''; - postInstall = '' - wrapProgram $out/bin/mmdc \ - --set PUPPETEER_EXECUTABLE_PATH ${pkgs.chromium.outPath}/bin/chromium - ''; - }); - pnpm = super.pnpm.override { - nativeBuildInputs = [ pkgs.makeWrapper ]; - - preRebuild = '' - sed 's/"link:/"file:/g' --in-place package.json - ''; - - postInstall = let - pnpmLibPath = pkgs.lib.makeBinPath [ - nodejs.passthru.python - nodejs - ]; - in '' - for prog in $out/bin/*; do - wrapProgram "$prog" --prefix PATH : ${pnpmLibPath} - done - ''; - }; - - parcel = super.parcel.override { - buildInputs = [ self.node-gyp-build ]; - preRebuild = '' - sed -i -e "s|#!/usr/bin/env node|#! ${pkgs.nodejs}/bin/node|" node_modules/node-gyp-build/bin.js - ''; - }; - - postcss-cli = super.postcss-cli.override { - nativeBuildInputs = [ pkgs.makeWrapper ]; - postInstall = '' - wrapProgram "$out/bin/postcss" \ - --prefix NODE_PATH : ${self.postcss}/lib/node_modules \ - --prefix NODE_PATH : ${self.autoprefixer}/lib/node_modules - ln -s '${self.postcss}/lib/node_modules/postcss' "$out/lib/node_modules/postcss" - ''; - passthru.tests = { - simple-execution = pkgs.callPackage ./package-tests/postcss-cli.nix { - inherit (self) postcss-cli; - }; - }; - meta = { - mainProgram = "postcss"; - maintainers = with lib.maintainers; [ Luflosi ]; - }; - }; - - # To update prisma, please first update prisma-engines to the latest - # version. Then change the correct hash to this package. The PR should hold - # two commits: one for the engines and the other one for the node package. - prisma = super.prisma.override rec { - nativeBuildInputs = [ pkgs.makeWrapper ]; - - inherit (pkgs.prisma-engines) version; - - src = fetchurl { - url = "https://registry.npmjs.org/prisma/-/prisma-${version}.tgz"; - sha512 = "sha512-l9MOgNCn/paDE+i1K2fp9NZ+Du4trzPTJsGkaQHVBufTGqzoYHuNk8JfzXuIn0Gte6/ZjyKj652Jq/Lc1tp2yw=="; - }; - postInstall = with pkgs; '' - wrapProgram "$out/bin/prisma" \ - --set PRISMA_MIGRATION_ENGINE_BINARY ${prisma-engines}/bin/migration-engine \ - --set PRISMA_QUERY_ENGINE_BINARY ${prisma-engines}/bin/query-engine \ - --set PRISMA_QUERY_ENGINE_LIBRARY ${lib.getLib prisma-engines}/lib/libquery_engine.node \ - --set PRISMA_INTROSPECTION_ENGINE_BINARY ${prisma-engines}/bin/introspection-engine \ - --set PRISMA_FMT_BINARY ${prisma-engines}/bin/prisma-fmt - ''; - }; - - pulp = super.pulp.override { - # tries to install purescript - npmFlags = "--ignore-scripts"; - - nativeBuildInputs = [ pkgs.makeWrapper ]; - postInstall = '' - wrapProgram "$out/bin/pulp" --suffix PATH : ${pkgs.lib.makeBinPath [ - pkgs.purescript - ]} - ''; - }; - - reveal-md = super.reveal-md.override ( - lib.optionalAttrs (!stdenv.isDarwin) { - nativeBuildInputs = [ pkgs.makeWrapper ]; - prePatch = '' - export PUPPETEER_SKIP_CHROMIUM_DOWNLOAD=1 - ''; - postInstall = '' - wrapProgram $out/bin/reveal-md \ - --set PUPPETEER_EXECUTABLE_PATH ${pkgs.chromium.outPath}/bin/chromium - ''; - } - ); - - ssb-server = super.ssb-server.override { - buildInputs = [ pkgs.automake pkgs.autoconf self.node-gyp-build ]; - meta.broken = since "10"; - }; - - stf = super.stf.override { - meta.broken = since "10"; - }; - - tailwindcss = super.tailwindcss.overrideAttrs (oldAttrs: { - plugins = [ ]; - nativeBuildInputs = [ pkgs.makeWrapper ]; - postInstall = '' - nodePath="" - for p in "$out" "${self.postcss}" $plugins; do - nodePath="$nodePath''${nodePath:+:}$p/lib/node_modules" - done - wrapProgram "$out/bin/tailwind" \ - --prefix NODE_PATH : "$nodePath" - wrapProgram "$out/bin/tailwindcss" \ - --prefix NODE_PATH : "$nodePath" - unset nodePath - ''; - passthru.tests = { - simple-execution = pkgs.callPackage ./package-tests/tailwindcss.nix { inherit (self) tailwindcss; }; - }; - }); - - tedicross = super."tedicross-git+https://github.com/TediCross/TediCross.git#v0.8.7".override { - nativeBuildInputs = [ pkgs.makeWrapper ]; - postInstall = '' - makeWrapper '${nodejs}/bin/node' "$out/bin/tedicross" \ - --add-flags "$out/lib/node_modules/tedicross/main.js" - ''; - }; - - thelounge-plugin-closepms = super.thelounge-plugin-closepms.override { - nativeBuildInputs = [ self.node-pre-gyp ]; - }; - - thelounge-theme-flat-blue = super.thelounge-theme-flat-blue.override { - nativeBuildInputs = [ self.node-pre-gyp ]; - }; - - thelounge-theme-flat-dark = super.thelounge-theme-flat-dark.override { - nativeBuildInputs = [ self.node-pre-gyp ]; - }; - - tsun = super.tsun.overrideAttrs (oldAttrs: { - buildInputs = oldAttrs.buildInputs ++ [ pkgs.makeWrapper ]; - postInstall = '' - wrapProgram "$out/bin/tsun" \ - --prefix NODE_PATH : ${self.typescript}/lib/node_modules - ''; - }); - - ts-node = super.ts-node.overrideAttrs (oldAttrs: { - buildInputs = oldAttrs.buildInputs ++ [ pkgs.makeWrapper ]; - postInstall = '' - wrapProgram "$out/bin/ts-node" \ - --prefix NODE_PATH : ${self.typescript}/lib/node_modules - ''; - }); - - typescript = super.typescript.overrideAttrs (oldAttrs: { - meta = oldAttrs.meta // { mainProgram = "tsc"; }; - }); - - typescript-language-server = super.typescript-language-server.override { - nativeBuildInputs = [ pkgs.makeWrapper ]; - postInstall = '' - wrapProgram "$out/bin/typescript-language-server" \ - --suffix PATH : ${pkgs.lib.makeBinPath [ self.typescript ]} - ''; - }; - - teck-programmer = super.teck-programmer.override { - nativeBuildInputs = [ self.node-gyp-build ]; - buildInputs = [ pkgs.libusb1 ]; - }; - - uppy-companion = super."@uppy/companion".override { - name = "uppy-companion"; - }; - - vega-cli = super.vega-cli.override { - nativeBuildInputs = [ pkgs.pkg-config ]; - buildInputs = with pkgs; [ - super.node-pre-gyp - pixman - cairo - pango - libjpeg - ]; - }; - - vega-lite = super.vega-lite.override { - postInstall = '' - cd node_modules - for dep in ${self.vega-cli}/lib/node_modules/vega-cli/node_modules/*; do - if [[ ! -d $dep ]]; then - ln -s "${self.vega-cli}/lib/node_modules/vega-cli/node_modules/$dep" - fi - done - ''; - passthru.tests = { - simple-execution = pkgs.callPackage ./package-tests/vega-lite.nix { - inherit (self) vega-lite; - }; - }; - }; - - webtorrent-cli = super.webtorrent-cli.override { - buildInputs = [ self.node-gyp-build ]; - }; - - joplin = super.joplin.override { - nativeBuildInputs = [ pkgs.pkg-config ]; - buildInputs = with pkgs; [ - # required by sharp - # https://sharp.pixelplumbing.com/install - vips - - libsecret - self.node-gyp-build - self.node-pre-gyp - ] ++ lib.optionals stdenv.isDarwin [ - darwin.apple_sdk.frameworks.AppKit - darwin.apple_sdk.frameworks.Security - ]; - }; - - thelounge = super.thelounge.override { - buildInputs = [ self.node-pre-gyp ]; - postInstall = '' - echo /var/lib/thelounge > $out/lib/node_modules/thelounge/.thelounge_home - patch -d $out/lib/node_modules/thelounge -p1 < ${./thelounge-packages-path.patch} - ''; - passthru.tests = { inherit (nixosTests) thelounge; }; - meta = super.thelounge.meta // { maintainers = with lib.maintainers; [ winter ]; }; - }; - - triton = super.triton.override { - nativeBuildInputs = [ pkgs.installShellFiles ]; - postInstall = '' - installShellCompletion --cmd triton --bash <($out/bin/triton completion) - ''; - }; - - yaml-language-server = super.yaml-language-server.override { - nativeBuildInputs = [ pkgs.makeWrapper ]; - postInstall = '' - wrapProgram "$out/bin/yaml-language-server" \ - --prefix NODE_PATH : ${self.prettier}/lib/node_modules - ''; - }; - - wavedrom-cli = super.wavedrom-cli.override { - nativeBuildInputs = [ pkgs.pkg-config self.node-pre-gyp ]; - # These dependencies are required by - # https://github.com/Automattic/node-canvas. - buildInputs = with pkgs; [ - pixman - cairo - pango - ]; - }; - }; -in self + mainProgramOverrides = final: prev: + mapAttrs (pkgName: mainProgram: + prev.${pkgName}.override (oldAttrs: { + meta = oldAttrs.meta // { inherit mainProgram; }; + }) + ) (import ./main-programs.nix); + + extensions = composeManyExtensions [ + mainProgramOverrides + (import ./overrides.nix { inherit pkgs nodejs; }) + ]; +in + makeExtensible (extends extensions nodePackages) diff --git a/pkgs/development/node-packages/main-programs.nix b/pkgs/development/node-packages/main-programs.nix new file mode 100644 index 00000000000..8a4b390d65b --- /dev/null +++ b/pkgs/development/node-packages/main-programs.nix @@ -0,0 +1,80 @@ +# Use this file to add `meta.mainProgram` to packages in `nodePackages`, that don't provide an +# executable that matches that packages name, so that they'll work with `nix run`. +{ + # Packages that provide multiple executables where one is clearly the `mainProgram`. + "@antfu/ni" = "ni"; + "@electron-forge/cli" = "electron-forge"; + "@squoosh/cli" = "squoosh-cli"; + "@webassemblyjs/cli" = "wasm2wast"; + coffee-script = "coffee"; + typescript = "tsc"; + vue-cli = "vue"; + + # Packages that provide a single executable whose name differs from the package's `name`. + "@angular/cli" = "ng"; + "@antora/cli" = "antora"; + "@astrojs/language-server" = "astro-ls"; + "@bitwarden/cli" = "bw"; + "@commitlint/cli" = "commitlint"; + "@gitbeaker/cli" = "gitbeaker"; + "@google/clasp" = "clasp"; + "@hyperspace/cli" = "hyp"; + "@medable/mdctl-cli" = "mdctl"; + "@mermaid-js/mermaid-cli" = "mmdc"; + "@nerdwallet/shepherd" = "shepherd"; + "@nestjs/cli" = "nest"; + "@prisma/language-server" = "prisma-language-server"; + "@tailwindcss/language-server" = "tailwindcss-language-server"; + "@uppy/companion" = "companion"; + "@vue/cli" = "vue"; + "@webassemblyjs/repl" = "wasm"; + "@webassemblyjs/wasm-strip" = "wasm-strip"; + "@webassemblyjs/wasm-text-gen" = "wasmgen"; + "@webassemblyjs/wast-refmt" = "wast-refmt"; + balanceofsatoshis = "bos"; + carbon-now-cli = "carbon-now"; + cdk8s-cli = "cdk8s"; + cdktf-cli = "cdktf"; + clean-css-cli = "cleancss"; + clipboard-cli = "clipboard"; + clubhouse-cli = "club"; + conventional-changelog-cli = "conventional-changelog"; + cpy-cli = "cpy"; + dockerfile-language-server-nodejs = "docker-langserver"; + fast-cli = "fast"; + fauna-shell = "fauna"; + firebase-tools = "firebase"; + fkill-cli = "fkill"; + fleek-cli = "fleek"; + git-run = "gr"; + gitmoji-cli = "gitmoji"; + graphql-cli = "graphql"; + grunt-cli = "grunt"; + gulp-cli = "gulp"; + kaput-cli = "kaput"; + leetcode-cli = "leetcode"; + less = "lessc"; + lua-fmt = "luafmt"; + markdownlint-cli = "markdownlint"; + near-cli = "near"; + neovim = "neovim-node-host"; + parcel-bundler = "parcel"; + parsoid = "parse.js"; + poor-mans-t-sql-formatter-cli = "sqlformat"; + postcss-cli = "postcss"; + purescript-psa = "psa"; + react-native-cli = "react-native"; + react-tools = "jsx"; + remod-cli = "remod"; + s3http = "s3http.js"; + svelte-language-server = "svelteserver"; + teck-programmer = "teck-firmware-upgrade"; + uglify-js = "uglifyjs"; + undollar = "$"; + vsc-leetcode-cli = "leetcode"; + vscode-css-languageserver-bin = "css-languageserver"; + vscode-html-languageserver-bin = "html-languageserver"; + vscode-json-languageserver-bin = "json-languageserver"; + vue-language-server = "vls"; + webtorrent-cli = "webtorrent"; +} diff --git a/pkgs/development/node-packages/node-packages.nix b/pkgs/development/node-packages/node-packages.nix index 5efcf38e83f..98145928db3 100644 --- a/pkgs/development/node-packages/node-packages.nix +++ b/pkgs/development/node-packages/node-packages.nix @@ -112,15 +112,6 @@ let sha512 = "ZF5Vul8UqwDSwYPxJ4YvdG7lmciJZ1nncyt9Dbk0swxw4MGdy0ZIf+91o318qUn/5JrttQ7ZCYoCZJCjYOSBtw=="; }; }; - "@angular-devkit/core-13.3.2" = { - name = "_at_angular-devkit_slash_core"; - packageName = "@angular-devkit/core"; - version = "13.3.2"; - src = fetchurl { - url = "https://registry.npmjs.org/@angular-devkit/core/-/core-13.3.2.tgz"; - sha512 = "wav5plcnlxQAfZ+0EUt3dvVTJnJ1au2TlKVQ0jSQJdR1LA6N7QUI49N2Ua6ZnDMwruQaQkoynitMW2l1it3qYQ=="; - }; - }; "@angular-devkit/core-13.3.5" = { name = "_at_angular-devkit_slash_core"; packageName = "@angular-devkit/core"; @@ -130,15 +121,6 @@ let sha512 = "w7vzK4VoYP9rLgxJ2SwEfrkpKybdD+QgQZlsDBzT0C6Ebp7b4gkNcNVFo8EiZvfDl6Yplw2IAP7g7fs3STn0hQ=="; }; }; - "@angular-devkit/schematics-13.3.2" = { - name = "_at_angular-devkit_slash_schematics"; - packageName = "@angular-devkit/schematics"; - version = "13.3.2"; - src = fetchurl { - url = "https://registry.npmjs.org/@angular-devkit/schematics/-/schematics-13.3.2.tgz"; - sha512 = "XCLb23jmqHN0gJg9ZlICaFgfpfnCufIQp5SOsRKMKRkhjKycvDmKnfBTKDlkzb1IaUl6wQwP5k7Z69b9EX+CQw=="; - }; - }; "@angular-devkit/schematics-13.3.5" = { name = "_at_angular-devkit_slash_schematics"; packageName = "@angular-devkit/schematics"; @@ -148,13 +130,13 @@ let sha512 = "0N/kL/Vfx0yVAEwa3HYxNx9wYb+G9r1JrLjJQQzDp+z9LtcojNf7j3oey6NXrDUs1WjVZOa/AIdRl3/DuaoG5w=="; }; }; - "@angular-devkit/schematics-cli-13.3.2" = { + "@angular-devkit/schematics-cli-13.3.5" = { name = "_at_angular-devkit_slash_schematics-cli"; packageName = "@angular-devkit/schematics-cli"; - version = "13.3.2"; + version = "13.3.5"; src = fetchurl { - url = "https://registry.npmjs.org/@angular-devkit/schematics-cli/-/schematics-cli-13.3.2.tgz"; - sha512 = "cUHZFNq2kaCaReJAU28MSu2D+WDFTqt2v03U79TryOutYdF8BV4FyfvKqCSW6WXna219GXSXPepVqDYcjvn7/w=="; + url = "https://registry.npmjs.org/@angular-devkit/schematics-cli/-/schematics-cli-13.3.5.tgz"; + sha512 = "ARX20ebtfwzef8GdXIcB6uv0sjTsaEniZyXBFchEKD6kR5EYZVaBL+ZVUbmsU1d0XY///WzW7pqwCyu5H1u+vw=="; }; }; "@antora/asciidoc-loader-3.0.1" = { @@ -373,6 +355,15 @@ let sha512 = "rgi3g078uAxdb8jg1A5U8sNWMUQq7UXwHT7qmPiGOeB+h5p+tzUFy/Awq2suv99Tq8efpn3HrAGTuDvxyvbwfg=="; }; }; + "@astrojs/vue-language-integration-0.1.0" = { + name = "_at_astrojs_slash_vue-language-integration"; + packageName = "@astrojs/vue-language-integration"; + version = "0.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/@astrojs/vue-language-integration/-/vue-language-integration-0.1.0.tgz"; + sha512 = "LD0aG567NItLFsGo3UsMduk2opSSYHWtk5SrJ9QoMu8g5CjoicmH8cARJ5GGT8EVGmveF6JJNFhJp/7nEr+eVw=="; + }; + }; "@aws-crypto/crc32-2.0.0" = { name = "_at_aws-crypto_slash_crc32"; packageName = "@aws-crypto/crc32"; @@ -472,13 +463,13 @@ let sha512 = "+D3xnPD5985iphgAqgUerBDs371a2WzzoEVi7eHJUMMsP/gEnSTdSH0HNxsqhYv6CW4EdKtvDAQdAwA1VtCf2A=="; }; }; - "@aws-sdk/client-s3-3.88.0" = { + "@aws-sdk/client-s3-3.92.0" = { name = "_at_aws-sdk_slash_client-s3"; packageName = "@aws-sdk/client-s3"; - version = "3.88.0"; + version = "3.92.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/client-s3/-/client-s3-3.88.0.tgz"; - sha512 = "OZZZ2k1YMpnWYi+9Jb9lIhc2Gr6Z4vl35MKlWAsSC9ed/3vzPhkyKBAFuIi7wIWsRof0QtVLlpQKKBPyylK95g=="; + url = "https://registry.npmjs.org/@aws-sdk/client-s3/-/client-s3-3.92.0.tgz"; + sha512 = "3gjOTuaQEBnzRPqNGXQFs3POIWlifo6d7N95p67kKEcxELP/5q2c56kzntfYwQ8lPDzfemzwRATltVBTV0bsBg=="; }; }; "@aws-sdk/client-sso-3.85.0" = { @@ -490,13 +481,13 @@ let sha512 = "JMW0NzFpo99oE6O9M/kgLela73p4vmhe/5TIcdrqUvP9XUV9nANl5nSXh3rqLz0ubmliedz9kdYYhwMC3ntoXg=="; }; }; - "@aws-sdk/client-sts-3.87.0" = { + "@aws-sdk/client-sts-3.92.0" = { name = "_at_aws-sdk_slash_client-sts"; packageName = "@aws-sdk/client-sts"; - version = "3.87.0"; + version = "3.92.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/client-sts/-/client-sts-3.87.0.tgz"; - sha512 = "JGI5rzSq8T7IVlfDJ8ltGl8nyVEtwvqXrYR87DwTjeE4HP+/oBdWdbO0oBL1TJMGjzZcENyVYvmaSAkobenkTg=="; + url = "https://registry.npmjs.org/@aws-sdk/client-sts/-/client-sts-3.92.0.tgz"; + sha512 = "ux9lg3tKVZasaD43WKTSep8bNsf4fBs2MsryxLHwPcxQc28ANKWsVbDFSz7clvorO3a0kKasg7d3HG9N7S+Xlg=="; }; }; "@aws-sdk/config-resolver-3.80.0" = { @@ -877,13 +868,13 @@ let sha512 = "csaH8YTyN+KMNczeK6fBS8l7iJaqcQcKOIbpQFg5upX4Ly5A56HJn4sVQhY1LSgfSk4xRsNfMy5mu6BlsIiaXA=="; }; }; - "@aws-sdk/s3-request-presigner-3.88.0" = { + "@aws-sdk/s3-request-presigner-3.92.0" = { name = "_at_aws-sdk_slash_s3-request-presigner"; packageName = "@aws-sdk/s3-request-presigner"; - version = "3.88.0"; + version = "3.92.0"; src = fetchurl { - url = "https://registry.npmjs.org/@aws-sdk/s3-request-presigner/-/s3-request-presigner-3.88.0.tgz"; - sha512 = "Ms3Fx+9HBV4llP5ZFrZ9LRQ6GTWGQs1ooX6kmdnzC1uNhKhAdcPrs4ngDQ4xqSsOCF77KMPaxRDTjj9o1DGqIQ=="; + url = "https://registry.npmjs.org/@aws-sdk/s3-request-presigner/-/s3-request-presigner-3.92.0.tgz"; + sha512 = "QqfSga9IODWGgeiSh0FE+cqgfRcOawWNydQDqqEoW6fUu/PJImchh+p3IjFnnwUlfHeuk2AufqWfmZDRQOvcGA=="; }; }; "@aws-sdk/service-error-classification-3.78.0" = { @@ -1219,13 +1210,13 @@ let sha512 = "GZt/TCsG70Ms19gfZO1tM4CVnXsPgEPBCpJu+Qz3L0LUDsY5nZqFZglIoPC1kIYOtNBZlrnFT+klg12vFGZXrw=="; }; }; - "@babel/core-7.17.10" = { + "@babel/core-7.17.12" = { name = "_at_babel_slash_core"; packageName = "@babel/core"; - version = "7.17.10"; + version = "7.17.12"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/core/-/core-7.17.10.tgz"; - sha512 = "liKoppandF3ZcBnIYFjfSDHZLKdLHGJRkoWtG8zQyGJBQfIYobpnVGI5+pLBNtS6psFLDzyq8+h5HiVljW9PNA=="; + url = "https://registry.npmjs.org/@babel/core/-/core-7.17.12.tgz"; + sha512 = "44ODe6O1IVz9s2oJE3rZ4trNNKTX9O7KpQpfAP4t8QII/zwrVRHL7i2pxhqtcY7tqMLrrKfMlBKnm1QlrRFs5w=="; }; }; "@babel/core-7.9.0" = { @@ -1237,13 +1228,13 @@ let sha512 = "kWc7L0fw1xwvI0zi8OKVBuxRVefwGOrKSQMvrQ3dW+bIIavBY3/NpXmpjMy7bQnLgwgzWQZ8TlM57YHpHNHz4w=="; }; }; - "@babel/generator-7.17.10" = { + "@babel/generator-7.17.12" = { name = "_at_babel_slash_generator"; packageName = "@babel/generator"; - version = "7.17.10"; + version = "7.17.12"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/generator/-/generator-7.17.10.tgz"; - sha512 = "46MJZZo9y3o4kmhBVc7zW7i8dtR1oIK/sdO5NcfcZRhTGYi+KKJRtHNgsU6c4VUcJmUNV/LQdebD/9Dlv4K+Tg=="; + url = "https://registry.npmjs.org/@babel/generator/-/generator-7.17.12.tgz"; + sha512 = "V49KtZiiiLjH/CnIW6OjJdrenrGoyh6AmKQ3k2AZFKozC1h846Q4NYlZ5nqAigPDUXfGzC88+LOUuG8yKd2kCw=="; }; }; "@babel/helper-annotate-as-pure-7.16.7" = { @@ -1273,22 +1264,22 @@ let sha512 = "gh3RxjWbauw/dFiU/7whjd0qN9K6nPJMqe6+Er7rOavFh0CQUSwhAE3IcTho2rywPJFxej6TUUHDkWcYI6gGqQ=="; }; }; - "@babel/helper-create-class-features-plugin-7.17.9" = { + "@babel/helper-create-class-features-plugin-7.17.12" = { name = "_at_babel_slash_helper-create-class-features-plugin"; packageName = "@babel/helper-create-class-features-plugin"; - version = "7.17.9"; + version = "7.17.12"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-create-class-features-plugin/-/helper-create-class-features-plugin-7.17.9.tgz"; - sha512 = "kUjip3gruz6AJKOq5i3nC6CoCEEF/oHH3cp6tOZhB+IyyyPyW0g1Gfsxn3mkk6S08pIA2y8GQh609v9G/5sHVQ=="; + url = "https://registry.npmjs.org/@babel/helper-create-class-features-plugin/-/helper-create-class-features-plugin-7.17.12.tgz"; + sha512 = "sZoOeUTkFJMyhqCei2+Z+wtH/BehW8NVKQt7IRUQlRiOARuXymJYfN/FCcI8CvVbR0XVyDM6eLFOlR7YtiXnew=="; }; }; - "@babel/helper-create-regexp-features-plugin-7.17.0" = { + "@babel/helper-create-regexp-features-plugin-7.17.12" = { name = "_at_babel_slash_helper-create-regexp-features-plugin"; packageName = "@babel/helper-create-regexp-features-plugin"; - version = "7.17.0"; + version = "7.17.12"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-create-regexp-features-plugin/-/helper-create-regexp-features-plugin-7.17.0.tgz"; - sha512 = "awO2So99wG6KnlE+TPs6rn83gCz5WlEePJDTnLEqbchMVrBeAujURVphRdigsk094VhvZehFoNOihSlcBjwsXA=="; + url = "https://registry.npmjs.org/@babel/helper-create-regexp-features-plugin/-/helper-create-regexp-features-plugin-7.17.12.tgz"; + sha512 = "b2aZrV4zvutr9AIa6/gA3wsZKRwTKYoDxYiFKcESS3Ug2GTXzwBEvMuuFLhCQpEnRXs1zng4ISAXSUxxKBIcxw=="; }; }; "@babel/helper-define-polyfill-provider-0.3.1" = { @@ -1354,13 +1345,13 @@ let sha512 = "LVtS6TqjJHFc+nYeITRo6VLXve70xmq7wPhWTqDJusJEgGmkAACWwMiTNrvfoQo6hEhFwAIixNkvB0jPXDL8Wg=="; }; }; - "@babel/helper-module-transforms-7.17.7" = { + "@babel/helper-module-transforms-7.17.12" = { name = "_at_babel_slash_helper-module-transforms"; packageName = "@babel/helper-module-transforms"; - version = "7.17.7"; + version = "7.17.12"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-module-transforms/-/helper-module-transforms-7.17.7.tgz"; - sha512 = "VmZD99F3gNTYB7fJRDTi+u6l/zxY0BE6OIxPSU7a50s6ZUQkHwSDmV92FfM+oCG0pZRVojGYhkR8I0OGeCVREw=="; + url = "https://registry.npmjs.org/@babel/helper-module-transforms/-/helper-module-transforms-7.17.12.tgz"; + sha512 = "t5s2BeSWIghhFRPh9XMn6EIGmvn8Lmw5RVASJzkIx1mSemubQQBNIZiQD7WzaFmaHIrjAec4x8z9Yx8SjJ1/LA=="; }; }; "@babel/helper-optimise-call-expression-7.16.7" = { @@ -1372,13 +1363,13 @@ let sha512 = "EtgBhg7rd/JcnpZFXpBy0ze1YRfdm7BnBX4uKMBd3ixa3RGAE002JZB66FJyNH7g0F38U05pXmA5P8cBh7z+1w=="; }; }; - "@babel/helper-plugin-utils-7.16.7" = { + "@babel/helper-plugin-utils-7.17.12" = { name = "_at_babel_slash_helper-plugin-utils"; packageName = "@babel/helper-plugin-utils"; - version = "7.16.7"; + version = "7.17.12"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/helper-plugin-utils/-/helper-plugin-utils-7.16.7.tgz"; - sha512 = "Qg3Nk7ZxpgMrsox6HreY1ZNKdBq7K72tDSliA6dCl5f007jR4ne8iD5UzuNnCJH2xBf2BEEVGr+/OL6Gdp7RxA=="; + url = "https://registry.npmjs.org/@babel/helper-plugin-utils/-/helper-plugin-utils-7.17.12.tgz"; + sha512 = "JDkf04mqtN3y4iAbO1hv9U2ARpPyPL1zqyWs/2WG1pgSq9llHFjStX5jdxb84himgJm+8Ng+x0oiWF/nw/XQKA=="; }; }; "@babel/helper-remap-async-to-generator-7.16.8" = { @@ -1462,13 +1453,13 @@ let sha512 = "cPCt915ShDWUEzEp3+UNRktO2n6v49l5RSnG9M5pS24hA+2FAc5si+Pn1i4VVbQQ+jh+bIZhPFQOJOzbrOYY1Q=="; }; }; - 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"@commitlint/types-16.2.1" = { + "@commitlint/types-17.0.0" = { name = "_at_commitlint_slash_types"; packageName = "@commitlint/types"; - version = "16.2.1"; + version = "17.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/@commitlint/types/-/types-16.2.1.tgz"; - sha512 = "7/z7pA7BM0i8XvMSBynO7xsB3mVQPUZbVn6zMIlp/a091XJ3qAXRXc+HwLYhiIdzzS5fuxxNIHZMGHVD4HJxdA=="; + url = "https://registry.npmjs.org/@commitlint/types/-/types-17.0.0.tgz"; + sha512 = "hBAw6U+SkAT5h47zDMeOu3HSiD0SODw4Aq7rRNh1ceUmL7GyLKYhPbUvlRWqZ65XjBLPHZhFyQlRaPNz8qvUyQ=="; }; }; "@corestore/networker-1.2.1" = { @@ -2605,31 +2596,31 @@ let sha512 = "do5jDoX9oCR/dGHE4POVQ3PYDCmQ2Fow4CA72UL4WoE8zUImA/0lChczjfl+ucNjE4sXFWUnzoO6j4WzrUvLnw=="; }; }; - "@cspell/cspell-bundled-dicts-5.20.0" = { + "@cspell/cspell-bundled-dicts-5.21.0" = { name = "_at_cspell_slash_cspell-bundled-dicts"; packageName = "@cspell/cspell-bundled-dicts"; - version = "5.20.0"; + version = "5.21.0"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/cspell-bundled-dicts/-/cspell-bundled-dicts-5.20.0.tgz"; - sha512 = "tCO32xVSuey4Tg8XuayBzcrCAfrAXL8J1PeYl26+/ZUl5zkAL4AuyL0Cf4e2PpeEomnUWP2y5noZLLbUeOIwnw=="; + url = "https://registry.npmjs.org/@cspell/cspell-bundled-dicts/-/cspell-bundled-dicts-5.21.0.tgz"; + sha512 = "pPL7EEWyeVnhyKbIHuGP0uGJy7ixzCrr1MIAM57CcyFuIKL0ewFvn4fdIyLoOzKtujfbreY5+BWVLsILMpZ70A=="; }; }; - "@cspell/cspell-pipe-5.20.0" = { + "@cspell/cspell-pipe-5.21.0" = { name = "_at_cspell_slash_cspell-pipe"; packageName = "@cspell/cspell-pipe"; - version = "5.20.0"; + version = "5.21.0"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/cspell-pipe/-/cspell-pipe-5.20.0.tgz"; - sha512 = "dGHf4XZgPlGqviYTD+5ZwSk3hpiywsuuDqnoPo9SeQ1xPon7uFVKsMiAAzvhGAkkBaKIBNP/nwPU0feYvLoCJg=="; + url = "https://registry.npmjs.org/@cspell/cspell-pipe/-/cspell-pipe-5.21.0.tgz"; + sha512 = "7Y+cjXU1JUxWy+oXUYpb3KzC21IC4YZDWLLkRCZE2tL2QGzr3JKtHtKVJf7nMSnIFMJqmZSV2RRCjqijifTJrw=="; }; }; - "@cspell/cspell-types-5.20.0" = { + "@cspell/cspell-types-5.21.0" = { name = "_at_cspell_slash_cspell-types"; packageName = "@cspell/cspell-types"; - version = "5.20.0"; + version = "5.21.0"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/cspell-types/-/cspell-types-5.20.0.tgz"; - sha512 = "p06/HAKgalqyGHfnowJvjO3SQHxuOzKdiJTUlUi8x1CrEk7PmZEHuORlt9tVVZ46Xf2qY9+QLeTtattlWPJ39A=="; + url = "https://registry.npmjs.org/@cspell/cspell-types/-/cspell-types-5.21.0.tgz"; + sha512 = "B0WT5Yl3T9CI0ShzZCq3ZX57ZnVI/CcxuDBk5jnevCGW8dfQGLEmpDRuZqFwGargDEjJX2GgTPnNdXp4OHmCDg=="; }; }; "@cspell/dict-ada-2.0.0" = { @@ -2668,13 +2659,13 @@ let sha512 = "nLNVddo+iu4q/Mu03nkVTMnSPxBkoLyZ0MgpHJZWCqxVATbBkzoZNNNjsTkJhvkbrUIWydf8YW4U4wYY+kyh7Q=="; }; }; - "@cspell/dict-cpp-2.0.3" = { + "@cspell/dict-cpp-3.0.1" = { name = "_at_cspell_slash_dict-cpp"; packageName = "@cspell/dict-cpp"; - version = "2.0.3"; + version = "3.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-cpp/-/dict-cpp-2.0.3.tgz"; - sha512 = "aWRvI3CQW2M3XeJpDVffItw/9n4hxsN5EPwyBa6Po6EnCxZZZLOqpieZk4JNz4pH0/xbnOX+sMMuSeKWr71r/w=="; + url = "https://registry.npmjs.org/@cspell/dict-cpp/-/dict-cpp-3.0.1.tgz"; + sha512 = "mWBRdbO/ZDXMf18ntp9EpKsoAW1/gIP1FJ6zVTwEQZHYyjKqbMCDZy1rtNGuZ5hS1XPpvY23s4l2xe6GrfDgHw=="; }; }; "@cspell/dict-cryptocurrencies-2.0.0" = { @@ -2686,13 +2677,13 @@ let sha512 = "nREysmmfOp7L2YCRAUufQahwD5/Punzb5AZ6eyg4zUamdRWHgBFphb5/9h2flt1vgdUfhc6hZcML21Ci7iXjaA=="; }; }; - "@cspell/dict-csharp-2.0.1" = { + "@cspell/dict-csharp-3.0.1" = { name = "_at_cspell_slash_dict-csharp"; packageName = "@cspell/dict-csharp"; - version = "2.0.1"; + version = "3.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-csharp/-/dict-csharp-2.0.1.tgz"; - sha512 = "ZzAr+WRP2FUtXHZtfhe8f3j9vPjH+5i44Hcr5JqbWxmqciGoTbWBPQXwu9y+J4mbdC69HSWRrVGkNJ8rQk8pSw=="; + url = "https://registry.npmjs.org/@cspell/dict-csharp/-/dict-csharp-3.0.1.tgz"; + sha512 = "xkfQu03F388w4sdVQSSjrVMkxAxpTYB2yW7nw0XYtTjl3L/jBgvTr/j1BTjdFbQhdNf10Lg0Ak1kXOjmHodVqA=="; }; }; "@cspell/dict-css-2.0.0" = { @@ -2749,13 +2740,13 @@ let sha512 = "tKSSUf9BJEV+GJQAYGw5e+ouhEe2ZXE620S7BLKe3ZmpnjlNG9JqlnaBhkIMxKnNFkLY2BP/EARzw31AZnOv4g=="; }; }; - "@cspell/dict-en_us-2.2.4" = { + "@cspell/dict-en_us-2.2.5" = { name = "_at_cspell_slash_dict-en_us"; packageName = "@cspell/dict-en_us"; - version = "2.2.4"; + version = "2.2.5"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-en_us/-/dict-en_us-2.2.4.tgz"; - sha512 = "gblsvIPLNAK+pRR/Mn2m2kRQLVFeoORQJeaZKlGHWckA3s0iuTN49hSSTbK66k3aWlzhirtSoux7IdvT2RpgnQ=="; + url = "https://registry.npmjs.org/@cspell/dict-en_us/-/dict-en_us-2.2.5.tgz"; + sha512 = "gRHem02ZY83AQUTYBxtiVNmtM6gWFCJKumRoAKLj7vWYelmNLcCBsMA3BOOOJ7cZNKCI04lDEdh0u2f2akKZtQ=="; }; }; "@cspell/dict-filetypes-2.0.1" = { @@ -2794,13 +2785,13 @@ let sha512 = "Rk+eTof/9inF11lvxmkCRK+gODatA3qai8kSASv6OG/JfPvpj7fTHErx/rdgPw/LOTDUafnoTjTYmj7B2MOQXg=="; }; }; - "@cspell/dict-golang-2.0.0" = { + "@cspell/dict-golang-3.0.1" = { name = "_at_cspell_slash_dict-golang"; packageName = "@cspell/dict-golang"; - version = "2.0.0"; + version = "3.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-golang/-/dict-golang-2.0.0.tgz"; - sha512 = "rUeZJR/S/ZjAsOURtxsAO6xDQhL0IzF458ScahaeOqe0zVL3tx7tCLikCgT92NWPs3BNqmsZGqYSDbn/1KsSIA=="; + url = "https://registry.npmjs.org/@cspell/dict-golang/-/dict-golang-3.0.1.tgz"; + sha512 = "0KNfXTbxHW2l8iVjxeOf+KFv9Qrw3z5cyKnkuYJWlBTSB5KcUBfeKCb4fsds26VdANqiy6U91b4gDx5kNEmBjQ=="; }; }; "@cspell/dict-haskell-2.0.0" = { @@ -2821,13 +2812,13 @@ let sha512 = "sbuFd+nSjgbrGf5eYwSddFhm1eLLePKWyH6Zn8Zb0OODrBK5e4vGn1/scI/MOH5a2IvNs8W9wp84uMBFJcQZtw=="; }; }; - "@cspell/dict-html-symbol-entities-2.0.0" = { + "@cspell/dict-html-symbol-entities-3.0.0" = { name = "_at_cspell_slash_dict-html-symbol-entities"; packageName = "@cspell/dict-html-symbol-entities"; - version = "2.0.0"; + version = "3.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/@cspell/dict-html-symbol-entities/-/dict-html-symbol-entities-2.0.0.tgz"; - sha512 = "71S5wGCe7dq6C+zGDwsEAe5msub/irrLi6SExeG11a/EkpA3RKAEheDGPk0hOY4+vOcIFHaApxOjLTtgQfYWfA=="; + url = "https://registry.npmjs.org/@cspell/dict-html-symbol-entities/-/dict-html-symbol-entities-3.0.0.tgz"; + sha512 = "04K7cPTcbYXmHICfiob4gZA1yaj4hpfM+Nl5WIJ1EAZsSGHdqmGEF28GuCjyQ8ZeKiJAsPt/vXuLBbjxkHqZyQ=="; }; }; "@cspell/dict-java-2.0.0" = { @@ -2839,13 +2830,13 @@ let sha512 = "9f5LDATlAiXRGqxLxgqbOLlQxuMW2zcN7tBgxwtN+4u90vM03ZUOR/gKIuDV/y0ZuAiWBIjA73cjk8DJ13Q1eA=="; }; }; - "@cspell/dict-latex-2.0.0" = { + "@cspell/dict-latex-2.0.2" = { name = "_at_cspell_slash_dict-latex"; packageName = "@cspell/dict-latex"; - version = "2.0.0"; + version = "2.0.2"; src = fetchurl { - 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sha1 = "ce56e539f83552b58d10d672ea4d6fc9adc7b234"; + sha512 = "rY0o9A5ECsTQRVhv7tL/OyDpGAoUB4tTvLiW1DSzQGq4bvTPhNw1VpSNjDJc5GFZ2XuyOtSWSVN05qOtcD71qQ=="; }; }; "@mapbox/mapbox-gl-supported-1.5.0" = { @@ -5491,7 +5563,7 @@ let version = "0.1.0"; src = fetchurl { url = "https://registry.npmjs.org/@mapbox/point-geometry/-/point-geometry-0.1.0.tgz"; - sha1 = "8a83f9335c7860effa2eeeca254332aa0aeed8f2"; + sha512 = "6j56HdLTwWGO0fJPlrZtdU/B13q8Uwmo18Ck2GnGgN9PCFyKTZ3UbXeEdRFh18i9XQ92eH2VdtpJHpBD3aripQ=="; }; }; "@mapbox/tiny-sdf-1.2.5" = { @@ -5509,7 +5581,7 @@ let version = "0.0.0"; src = fetchurl { url = "https://registry.npmjs.org/@mapbox/unitbezier/-/unitbezier-0.0.0.tgz"; - sha1 = "15651bd553a67b8581fb398810c98ad86a34524e"; + sha512 = "HPnRdYO0WjFjRTSwO3frz1wKaU649OBFPX3Zo/2WZvuRi6zMiRGui8SnPQiQABgqCf8YikDe5t3HViTVw1WUzA=="; }; }; "@mapbox/vector-tile-1.3.1" = { @@ -5728,13 +5800,13 @@ let sha512 = "W6CLUJ2eBMw3Rec70qrsEW0jOm/3twwJv21mrmj2yORiaVmVYGS4sSS5yUwvQc1ZlDLYGPnClVWmUUMagKNsfA=="; }; }; - 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sha1 = "355cbc98bafad5978f9ed095f397621f1d066b70"; + sha512 = "j9ednRT81vYJ9OfVuXG6ERSTdEL1xVsNgqpkxMsbIabzSo3goCjDIveeGv5d03om39ML71RdmrGNjG5SReBP/Q=="; }; }; "@protobufjs/fetch-1.1.0" = { @@ -7597,7 +7669,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/@protobufjs/fetch/-/fetch-1.1.0.tgz"; - sha1 = "ba99fb598614af65700c1619ff06d454b0d84c45"; + sha512 = "lljVXpqXebpsijW71PZaCYeIcE5on1w5DlQy5WH6GLbFryLUrBD4932W/E2BSpfRJWseIL4v/KPgBFxDOIdKpQ=="; }; }; "@protobufjs/float-1.0.2" = { @@ -7606,7 +7678,7 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/@protobufjs/float/-/float-1.0.2.tgz"; - sha1 = "5e9e1abdcb73fc0a7cb8b291df78c8cbd97b87d1"; + sha512 = "Ddb+kVXlXst9d+R9PfTIxh1EdNkgoRe5tOX6t01f1lYWOvJnSPDBlG241QLzcyPdoNTsblLUdujGSE4RzrTZGQ=="; }; }; "@protobufjs/inquire-1.1.0" = { @@ -7615,7 +7687,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/@protobufjs/inquire/-/inquire-1.1.0.tgz"; - sha1 = "ff200e3e7cf2429e2dcafc1140828e8cc638f089"; + sha512 = "kdSefcPdruJiFMVSbn801t4vFK7KB/5gd2fYvrxhuJYg8ILrmn9SKSX2tZdV6V+ksulWqS7aXjBcRXl3wHoD9Q=="; }; }; "@protobufjs/path-1.1.2" = { @@ -7624,7 +7696,7 @@ let version = "1.1.2"; src = fetchurl { url = "https://registry.npmjs.org/@protobufjs/path/-/path-1.1.2.tgz"; - 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sha1 = "c8ce27de0acc76d896d2b1fad3df588d9e82f014"; + sha512 = "FsqWmApWGMGLKKNpHt12PMc5AK7BaZee0WRh04fCysmTzHe+rrKOa2MKjORhnzfpe4r0JnfdqHn02iDA9Dqj2A=="; }; }; "acorn-2.7.0" = { @@ -11503,7 +11629,7 @@ let version = "2.7.0"; src = fetchurl { url = "https://registry.npmjs.org/acorn/-/acorn-2.7.0.tgz"; - sha1 = "ab6e7d9d886aaca8b085bc3312b79a198433f0e7"; + sha512 = "pXK8ez/pVjqFdAgBkF1YPVRacuLQ9EXBKaKWaeh58WNfMkCmZhOZzu+NtKSPD5PHmCCHheQ5cD29qM1K4QTxIg=="; }; }; "acorn-3.3.0" = { @@ -11512,7 +11638,7 @@ let version = "3.3.0"; src = fetchurl { url = "https://registry.npmjs.org/acorn/-/acorn-3.3.0.tgz"; - sha1 = "45e37fb39e8da3f25baee3ff5369e2bb5f22017a"; + sha512 = "OLUyIIZ7mF5oaAUT1w0TFqQS81q3saT46x8t7ukpPjMNk+nbs4ZHhs7ToV8EWnLYLepjETXd4XaCE4uxkMeqUw=="; }; }; "acorn-4.0.13" = { @@ -11521,7 +11647,7 @@ let version = "4.0.13"; src = fetchurl { url = "https://registry.npmjs.org/acorn/-/acorn-4.0.13.tgz"; - sha1 = "105495ae5361d697bd195c825192e1ad7f253787"; + sha512 = "fu2ygVGuMmlzG8ZeRJ0bvR41nsAkxxhbyk8bZ1SS521Z7vmgJFTQQlfz/Mp/nJexGBz+v8sC9bM6+lNgskt4Ug=="; }; }; "acorn-5.7.4" = { @@ -11575,7 +11701,7 @@ let version = "1.0.9"; src = fetchurl { url = "https://registry.npmjs.org/acorn-globals/-/acorn-globals-1.0.9.tgz"; - sha1 = "55bb5e98691507b74579d0513413217c380c54cf"; + sha512 = "j3/4pkfih8W4NK22gxVSXcEonTpAHOHh0hu5BoZrKcOsW/4oBPxTi4Yk3SAj+FhC1f3+bRTkXdm4019gw1vg9g=="; }; }; "acorn-globals-3.1.0" = { @@ -11584,7 +11710,7 @@ let version = "3.1.0"; src = fetchurl { url = "https://registry.npmjs.org/acorn-globals/-/acorn-globals-3.1.0.tgz"; - sha1 = "fd8270f71fbb4996b004fa880ee5d46573a731bf"; + sha512 = "uWttZCk96+7itPxK8xCzY86PnxKTMrReKDqrHzv42VQY0K30PUO8WY13WMOuI+cOdX4EIdzdvQ8k6jkuGRFMYw=="; }; }; "acorn-globals-4.3.4" = { @@ -11620,7 +11746,7 @@ let version = "3.0.1"; src = fetchurl { url = "https://registry.npmjs.org/acorn-jsx/-/acorn-jsx-3.0.1.tgz"; - sha1 = "afdf9488fb1ecefc8348f6fb22f464e32a58b36b"; + sha512 = "AU7pnZkguthwBjKgCg6998ByQNIMjbuDQZ8bb78QAFZwPfmKia8AIzgY/gWgqCjnht8JLdXmB4YxA0KaV60ncQ=="; }; }; "acorn-jsx-5.3.2" = { @@ -11701,7 +11827,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/adbkit-logcat/-/adbkit-logcat-1.1.0.tgz"; - sha1 = "01d7f9b0cef9093a30bcb3b007efff301508962f"; + sha512 = "57iYRLdjmhI1fnc890KyflzWpnIb/aq5ET3fbn3axdyyeyKeP4Ji/GhnfBNguG1Tw7SQRL2eBnA+hvbwIsTtNg=="; }; }; "adbkit-monkey-1.0.1" = { @@ -11710,7 +11836,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/adbkit-monkey/-/adbkit-monkey-1.0.1.tgz"; - sha1 = "f291be701a2efc567a63fc7aa6afcded31430be1"; + sha512 = "uU8p+p4sv7gLsjO/At4iPufoPD3R16kVbzDVecdIerR9RzhEK6PcyAJghdOXwrYKbhm7SmPQWsxVRloDBMINDA=="; }; }; "add-stream-1.0.0" = { @@ -11719,7 +11845,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/add-stream/-/add-stream-1.0.0.tgz"; - sha1 = "6a7990437ca736d5e1288db92bd3266d5f5cb2aa"; + sha512 = "qQLMr+8o0WC4FZGQTcJiKBVC59JylcPSrTtk6usvmIDFUOCKegapy1VHQwRbFMOFyb/inzUVqHs+eMYKDM1YeQ=="; }; }; "addons-linter-4.14.0" = { @@ -11800,7 +11926,7 @@ let version = "0.8.1"; src = fetchurl { url = "https://registry.npmjs.org/after/-/after-0.8.1.tgz"; - sha1 = "ab5d4fb883f596816d3515f8f791c0af486dd627"; + sha512 = "SuI3vWhCFeSmkmmJ3efyuOkrhGyp/AuHthh3F5DinGYh2kR9t/0xUlm3/Vn2qMScfgg+cKho5fW7TUEYUhYeiA=="; }; }; "after-0.8.2" = { @@ -11809,7 +11935,7 @@ let version = "0.8.2"; src = fetchurl { url = "https://registry.npmjs.org/after/-/after-0.8.2.tgz"; - sha1 = "fedb394f9f0e02aa9768e702bda23b505fae7e1f"; + sha512 = "QbJ0NTQ/I9DI3uSJA4cbexiwQeRAfjPScqIbSjUDd9TOrcg6pTkdgziesOqxBMBzit8vFCTwrP27t13vFOORRA=="; }; }; "agent-base-2.1.1" = { @@ -11818,7 +11944,7 @@ let version = "2.1.1"; src = fetchurl { url = "https://registry.npmjs.org/agent-base/-/agent-base-2.1.1.tgz"; - sha1 = "d6de10d5af6132d5bd692427d46fc538539094c7"; + sha512 = "oDtZV740o3fr5oJtPLOsgH2hl2TRPscNXIx4VzzBwVlXVkv8RHm7XXqGAYg8t20+Gwu6LNDnx8HRMGqVGPZ8Vw=="; }; }; "agent-base-4.3.0" = { @@ -11881,7 +12007,7 @@ let version = "0.2.16"; src = fetchurl { url = "https://registry.npmjs.org/airplay-js/-/airplay-js-0.2.16.tgz"; - sha1 = "48566d5fa55a921d80187ad946f7e8f7555902a1"; + sha512 = "e3H2TsznhnXTuSuw15dk9a+h0DctqJu69e8APtDllpUfq4GsMhq5jTdB/bmgigU03z1POC7QbuD90UTm1EWjeA=="; }; }; "airplay-js-0.3.0" = { @@ -11890,7 +12016,7 @@ let version = "0.3.0"; src = fetchurl { url = "https://registry.npmjs.org/airplay-js/-/airplay-js-0.3.0.tgz"; - sha1 = "16bac2ef91b31249382924bfdeeabaddc9db7398"; + sha512 = "V7nbJXSP352Hp5dWNUo3UZ9WY6CupKmXmP5XDBjuAKLKA/CNs9tvVGvVxIL/9l+oJjZc5h0m4JUUKs7eHO8Meg=="; }; }; "airplay-protocol-2.0.2" = { @@ -11899,7 +12025,7 @@ let version = "2.0.2"; src = fetchurl { url = "https://registry.npmjs.org/airplay-protocol/-/airplay-protocol-2.0.2.tgz"; - sha1 = "b5b2a7137331f5545acbe196ba5693c13238fc5e"; + sha512 = "Pm25h2kCF51mA8dg1froC2CSwZknAvyXNRFjlafhcs6yQB5R+heddwSVMqRp7KBQyk5j/nhTq1JxF3pXdwHXVg=="; }; }; "airplayer-2.0.0" = { @@ -11908,7 +12034,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/airplayer/-/airplayer-2.0.0.tgz"; - sha1 = "7ab62d23b96d44234138aec1281d2e67ef190259"; + sha512 = "oQFi0K+TLDpw8vTeDnkX1opLEGPJ03OeT5dKzYqPHf6JjuaYmXoNdc5GQhZDF+IzX8ypWvYZ/NbftabNU02dkA=="; }; }; "ajv-4.11.8" = { @@ -11917,7 +12043,7 @@ let version = "4.11.8"; src = fetchurl { url = "https://registry.npmjs.org/ajv/-/ajv-4.11.8.tgz"; - sha1 = "82ffb02b29e662ae53bdc20af15947706739c536"; + sha512 = "I/bSHSNEcFFqXLf91nchoNB9D1Kie3QKcWdchYUaoIg1+1bdWDkdfdlvdIOJbi9U8xR0y+MWc5D+won9v95WlQ=="; }; }; "ajv-5.5.2" = { @@ -11926,7 +12052,7 @@ let version = "5.5.2"; src = fetchurl { url = "https://registry.npmjs.org/ajv/-/ajv-5.5.2.tgz"; - sha1 = "73b5eeca3fab653e3d3f9422b341ad42205dc965"; + sha512 = "Ajr4IcMXq/2QmMkEmSvxqfLN5zGmJ92gHXAeOXq1OekoH2rfDNsgdDoL2f7QaRCy7G/E6TpxBVdRuNraMztGHw=="; }; }; "ajv-6.12.6" = { @@ -11998,7 +12124,7 @@ let version = "1.5.1"; src = fetchurl { url = "https://registry.npmjs.org/ajv-keywords/-/ajv-keywords-1.5.1.tgz"; - sha1 = "314dd0a4b3368fad3dfcdc54ede6171b886daf3c"; + sha512 = "vuBv+fm2s6cqUyey2A7qYcvsik+GMDJsw8BARP2sDE76cqmaZVarsvHf7Vx6VJ0Xk8gLl+u3MoAPf6gKzJefeA=="; }; }; "ajv-keywords-2.1.1" = { @@ -12007,7 +12133,7 @@ let version = "2.1.1"; src = fetchurl { url = "https://registry.npmjs.org/ajv-keywords/-/ajv-keywords-2.1.1.tgz"; - sha1 = "617997fc5f60576894c435f940d819e135b80762"; + sha512 = "ZFztHzVRdGLAzJmpUT9LNFLe1YiVOEylcaNpEutM26PVTCtOD919IMfD01CgbRouB42Dd9atjx1HseC15DgOZA=="; }; }; "ajv-keywords-3.5.2" = { @@ -12052,7 +12178,7 @@ let version = "0.1.4"; src = fetchurl { url = "https://registry.npmjs.org/align-text/-/align-text-0.1.4.tgz"; - sha1 = "0cd90a561093f35d0a99256c22b7069433fad117"; + sha512 = "GrTZLRpmp6wIC2ztrWW9MjjTgSKccffgFagbNDOX95/dcjEcYZibYTeaOntySQLcdw1ztBoFkviiUvTMbb9MYg=="; }; }; "aligned-block-file-1.2.2" = { @@ -12070,7 +12196,7 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/alphanum-sort/-/alphanum-sort-1.0.2.tgz"; - sha1 = "97a1119649b211ad33691d9f9f486a8ec9fbe0a3"; + sha512 = "0FcBfdcmaumGPQ0qPn7Q5qTgz/ooXgIyp1rf8ik5bGX8mpE2YHjC0P/eyQvxu1GURYQgq9ozf2mteQ5ZD9YiyQ=="; }; }; "amdefine-1.0.1" = { @@ -12079,7 +12205,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/amdefine/-/amdefine-1.0.1.tgz"; - sha1 = "4a5282ac164729e93619bcfd3ad151f817ce91f5"; + sha512 = "S2Hw0TtNkMJhIabBwIojKL9YHO5T0n5eNqWJ7Lrlel/zDbftQpxpapi8tZs3X1HWa+u+QeydGmzzNU0m09+Rcg=="; }; }; "amp-0.3.1" = { @@ -12088,7 +12214,7 @@ let version = "0.3.1"; src = fetchurl { url = "https://registry.npmjs.org/amp/-/amp-0.3.1.tgz"; - sha1 = "6adf8d58a74f361e82c1fa8d389c079e139fc47d"; + sha512 = "OwIuC4yZaRogHKiuU5WlMR5Xk/jAcpPtawWL05Gj8Lvm2F6mwoJt4O/bHI+DHwG79vWd+8OFYM4/BzYqyRd3qw=="; }; }; "amp-message-0.1.2" = { @@ -12097,7 +12223,7 @@ let version = "0.1.2"; src = fetchurl { url = "https://registry.npmjs.org/amp-message/-/amp-message-0.1.2.tgz"; - sha1 = "a78f1c98995087ad36192a41298e4db49e3dfc45"; + sha512 = "JqutcFwoU1+jhv7ArgW38bqrE+LQdcRv4NxNw0mp0JHQyB6tXesWRjtYKlDgHRY2o3JE5UTaBGUK8kSWUdxWUg=="; }; }; "anchor-markdown-header-0.5.7" = { @@ -12106,7 +12232,7 @@ let version = "0.5.7"; src = fetchurl { url = "https://registry.npmjs.org/anchor-markdown-header/-/anchor-markdown-header-0.5.7.tgz"; - sha1 = "045063d76e6a1f9cd327a57a0126aa0fdec371a7"; + sha512 = "AmikqcK15r3q99hPvTa1na9n3eLkW0uE+RL9BZMSgwYalQeDnNXbYrN06BIcBPfGlmsGIE2jvkuvl/x0hyPF5Q=="; }; }; "ansi-0.3.1" = { @@ -12115,7 +12241,7 @@ let version = "0.3.1"; src = fetchurl { url = "https://registry.npmjs.org/ansi/-/ansi-0.3.1.tgz"; - sha1 = "0c42d4fb17160d5a9af1e484bace1c66922c1b21"; + sha512 = "iFY7JCgHbepc0b82yLaw4IMortylNb6wG4kL+4R0C3iv6i+RHGHux/yUX5BTiRvSX/shMnngjR1YyNMnXEFh5A=="; }; }; "ansi-align-1.1.0" = { @@ -12124,7 +12250,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/ansi-align/-/ansi-align-1.1.0.tgz"; - sha1 = "2f0c1658829739add5ebb15e6b0c6e3423f016ba"; + sha512 = "ncgIO/ZeFcsh3cye0NgGPb5h/3vCiKJxp6HvPtqsFvEL/4b/G2tNgrr8EOYN5RSVnGx69k8dFYSBG/w1yKX58Q=="; }; }; "ansi-align-2.0.0" = { @@ -12133,7 +12259,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/ansi-align/-/ansi-align-2.0.0.tgz"; - sha1 = "c36aeccba563b89ceb556f3690f0b1d9e3547f7f"; + sha512 = "TdlOggdA/zURfMYa7ABC66j+oqfMew58KpJMbUlH3bcZP1b+cBHIHDDn5uH9INsxrHBPjsqM0tDB4jPTF/vgJA=="; }; }; "ansi-align-3.0.1" = { @@ -12181,13 +12307,22 @@ let sha512 = "JoX0apGbHaUJBNl6yF+p6JAFYZ666/hhCGKN5t9QFjbJQKUU/g8MNbFDbvfrgKXvI1QpZplPOnwIo99lX/AAmA=="; }; }; + "ansi-colors-4.1.3" = { + name = "ansi-colors"; + packageName = "ansi-colors"; + version = "4.1.3"; + src = fetchurl { + url = "https://registry.npmjs.org/ansi-colors/-/ansi-colors-4.1.3.tgz"; + sha512 = "/6w/C21Pm1A7aZitlI5Ni/2J6FFQN8i1Cvz3kHABAAbw93v/NlvKdVOqz7CCWz/3iv/JplRSEEZ83XION15ovw=="; + }; + }; "ansi-cyan-0.1.1" = { name = "ansi-cyan"; packageName = "ansi-cyan"; version = "0.1.1"; src = fetchurl { url = "https://registry.npmjs.org/ansi-cyan/-/ansi-cyan-0.1.1.tgz"; - sha1 = "538ae528af8982f28ae30d86f2f17456d2609873"; + sha512 = "eCjan3AVo/SxZ0/MyIYRtkpxIu/H3xZN7URr1vXVrISxeyz8fUFz0FJziamK4sS8I+t35y4rHg1b2PklyBe/7A=="; }; }; "ansi-diff-1.1.1" = { @@ -12223,7 +12358,7 @@ let version = "1.4.0"; src = fetchurl { url = "https://registry.npmjs.org/ansi-escapes/-/ansi-escapes-1.4.0.tgz"; - sha1 = "d3a8a83b319aa67793662b13e761c7911422306e"; + sha512 = "wiXutNjDUlNEDWHcYH3jtZUhd3c4/VojassD8zHdHCY13xbZy2XbW+NKQwA0tWGBVzDA9qEzYwfoSsWmviidhw=="; }; }; "ansi-escapes-3.2.0" = { @@ -12259,7 +12394,7 @@ let version = "0.1.1"; src = fetchurl { url = "https://registry.npmjs.org/ansi-gray/-/ansi-gray-0.1.1.tgz"; - sha1 = "2962cf54ec9792c48510a3deb524436861ef7251"; + sha512 = "HrgGIZUl8h2EHuZaU9hTR/cU5nhKxpVE1V6kdGsQ8e4zirElJ5fvtfc8N7Q1oq1aatO275i8pUFUCpNWCAnVWw=="; }; }; "ansi-html-0.0.7" = { @@ -12268,7 +12403,7 @@ let version = "0.0.7"; src = fetchurl { url = "https://registry.npmjs.org/ansi-html/-/ansi-html-0.0.7.tgz"; - sha1 = "813584021962a9e9e6fd039f940d12f56ca7859e"; + sha512 = "JoAxEa1DfP9m2xfB/y2r/aKcwXNlltr4+0QSBC4TrLfcxyvepX2Pv0t/xpgGV5bGsDzCYV8SzjWgyCW0T9yYbA=="; }; }; "ansi-html-community-0.0.8" = { @@ -12286,7 +12421,7 @@ let version = "0.1.1"; src = fetchurl { url = "https://registry.npmjs.org/ansi-red/-/ansi-red-0.1.1.tgz"; - sha1 = "8c638f9d1080800a353c9c28c8a81ca4705d946c"; + sha512 = "ewaIr5y+9CUTGFwZfpECUbFlGcC0GCw1oqR9RI6h1gQCd9Aj2GxSckCnPsVJnmfMZbwFYE+leZGASgkWl06Jow=="; }; }; "ansi-regex-0.2.1" = { @@ -12295,7 +12430,7 @@ let version = "0.2.1"; src = fetchurl { url = "https://registry.npmjs.org/ansi-regex/-/ansi-regex-0.2.1.tgz"; - sha1 = "0d8e946967a3d8143f93e24e298525fc1b2235f9"; + sha512 = "sGwIGMjhYdW26/IhwK2gkWWI8DRCVO6uj3hYgHT+zD+QL1pa37tM3ujhyfcJIYSbsxp7Gxhy7zrRW/1AHm4BmA=="; }; }; "ansi-regex-1.1.1" = { @@ -12304,7 +12439,7 @@ let version = "1.1.1"; src = fetchurl { url = "https://registry.npmjs.org/ansi-regex/-/ansi-regex-1.1.1.tgz"; - sha1 = "41c847194646375e6a1a5d10c3ca054ef9fc980d"; + sha512 = "q5i8bFLg2wDfsuR56c1NzlJFPzVD+9mxhDrhqOGigEFa87OZHlF+9dWeGWzVTP/0ECiA/JUGzfzRr2t3eYORRw=="; }; }; "ansi-regex-2.1.1" = { @@ -12313,7 +12448,7 @@ let version = "2.1.1"; src = fetchurl { url = "https://registry.npmjs.org/ansi-regex/-/ansi-regex-2.1.1.tgz"; - sha1 = "c3b33ab5ee360d86e0e628f0468ae7ef27d654df"; + sha512 = "TIGnTpdo+E3+pCyAluZvtED5p5wCqLdezCyhPZzKPcxvFplEt4i+W7OONCKgeZFT3+y5NZZfOOS/Bdcanm1MYA=="; }; }; "ansi-regex-3.0.1" = { @@ -12367,7 +12502,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/ansi-styles/-/ansi-styles-1.0.0.tgz"; - sha1 = "cb102df1c56f5123eab8b67cd7b98027a0279178"; + sha512 = "3iF4FIKdxaVYT3JqQuY3Wat/T2t7TRbbQ94Fu50ZUCbLy4TFbTzr90NOHQodQkNqmeEGCw8WbeP78WNi6SKYUA=="; }; }; "ansi-styles-1.1.0" = { @@ -12376,7 +12511,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/ansi-styles/-/ansi-styles-1.1.0.tgz"; - sha1 = "eaecbf66cd706882760b2f4691582b8f55d7a7de"; + sha512 = "f2PKUkN5QngiSemowa6Mrk9MPCdtFiOSmibjZ+j1qhLGHHYsqZwmBMRF3IRMVXo8sybDqx2fJl2d/8OphBoWkA=="; }; }; "ansi-styles-2.2.1" = { @@ -12385,7 +12520,7 @@ let version = "2.2.1"; src = fetchurl { url = "https://registry.npmjs.org/ansi-styles/-/ansi-styles-2.2.1.tgz"; - sha1 = "b432dd3358b634cf75e1e4664368240533c1ddbe"; + sha512 = "kmCevFghRiWM7HB5zTPULl4r9bVFSWjz62MhqizDGUrq2NWuNMQyuv4tHHoKJHs69M/MF64lEcHdYIocrdWQYA=="; }; }; "ansi-styles-3.2.1" = { @@ -12430,7 +12565,7 @@ let version = "0.0.2"; src = fetchurl { url = "https://registry.npmjs.org/ansi-term/-/ansi-term-0.0.2.tgz"; - sha1 = "fd753efa4beada0eac99981bc52a3f6ff019deb7"; + sha512 = "jLnGE+n8uAjksTJxiWZf/kcUmXq+cRWSl550B9NmQ8YiqaTM+lILcSe5dHdp8QkJPhaOghDjnMKwyYSMjosgAA=="; }; }; "ansi-to-html-0.6.15" = { @@ -12448,7 +12583,7 @@ let version = "0.1.0"; src = fetchurl { url = "https://registry.npmjs.org/ansi-wrap/-/ansi-wrap-0.1.0.tgz"; - sha1 = "a82250ddb0015e9a27ca82e82ea603bbfa45efaf"; + sha512 = "ZyznvL8k/FZeQHr2T6LzcJ/+vBApDnMNZvfVFy3At0knswWd6rJ3/0Hhmpu8oqa6C92npmozs890sX9Dl6q+Qw=="; }; }; "ansicolors-0.3.2" = { @@ -12457,7 +12592,7 @@ let version = "0.3.2"; src = fetchurl { url = "https://registry.npmjs.org/ansicolors/-/ansicolors-0.3.2.tgz"; - sha1 = "665597de86a9ffe3aa9bfbe6cae5c6ea426b4979"; + sha512 = "QXu7BPrP29VllRxH8GwB7x5iX5qWKAAMLqKQGWTeLWVlNHNOpVMJ91dsxQAIWXpjuW5wqvxu3Jd/nRjrJ+0pqg=="; }; }; "ansidec-0.3.4" = { @@ -12493,7 +12628,7 @@ let version = "1.3.0"; src = fetchurl { url = "https://registry.npmjs.org/any-promise/-/any-promise-1.3.0.tgz"; - sha1 = "abc6afeedcea52e809cdc0376aed3ce39635d17f"; + sha512 = "7UvmKalWRt1wgjL1RrGxoSJW/0QZFIegpeGvZG9kjp8vrRu55XTHbwnqq2GpXm9uLbcuhxm3IqX9OB4MZR1b2A=="; }; }; "anymatch-1.3.2" = { @@ -12529,7 +12664,7 @@ let version = "0.1.0"; src = fetchurl { url = "https://registry.npmjs.org/ap/-/ap-0.1.0.tgz"; - sha1 = "d8a3f26615379398a1b53ca6cc1a666a0fbfe150"; + sha512 = "iNF0PHuPu0RokHSicNS46wSj3bg3inzbDVaoFVZ+T0C+RvSu1bqg+OilF8Sr8S6j9mURv3Xx7BnT3bbF5fgytw=="; }; }; "apache-crypt-1.2.5" = { @@ -12691,7 +12826,7 @@ let version = "2.2.0"; src = fetchurl { url = "https://registry.npmjs.org/app-path/-/app-path-2.2.0.tgz"; - sha1 = "2af5c2b544a40e15fc1ac55548314397460845d0"; + sha512 = "8Nayxm2u6rVd+8OuVV8mwzSVB+EMDGCC8SV82YIOuFutFtHFCnXY52fhPEPT61FmPLpzd4HctsofSPp3UQonMw=="; }; }; "app-root-path-3.0.0" = { @@ -12718,7 +12853,7 @@ let version = "0.1.1"; src = fetchurl { url = "https://registry.npmjs.org/append/-/append-0.1.1.tgz"; - sha1 = "7e5dd327747078d877286fbb624b1e8f4d2b396b"; + sha512 = "B93J4FCl2WcF6cQvsnX6nxPrQlb4fO1Hosp3S1Frf2nBqHDvOC89kasUoUtdeP+dAbwZxEW5k4E5RgWMJP/Z9g=="; }; }; "append-batch-0.0.2" = { @@ -12727,7 +12862,7 @@ let version = "0.0.2"; src = fetchurl { url = "https://registry.npmjs.org/append-batch/-/append-batch-0.0.2.tgz"; - sha1 = "d739b4503888245d47933d47562b1149ff9df8b7"; + sha512 = "v1lD0bKqM4MTtGzapIx6qCGcwbVJyKaTmbzIzA6kpnVwTY1E+VNMeYoOvAywl+hXEEF4CcqkrH/4iFMbzM8XXw=="; }; }; "append-buffer-1.0.2" = { @@ -12736,7 +12871,7 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/append-buffer/-/append-buffer-1.0.2.tgz"; - sha1 = "d8220cf466081525efea50614f3de6514dfa58f1"; + sha512 = "WLbYiXzD3y/ATLZFufV/rZvWdZOs+Z/+5v1rBZ463Jn398pa6kcde27cvozYnBoxXblGZTFfoPpsaEw0orU5BA=="; }; }; "append-field-1.0.0" = { @@ -12745,7 +12880,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/append-field/-/append-field-1.0.0.tgz"; - sha1 = "1e3440e915f0b1203d23748e78edd7b9b5b43e56"; + sha512 = "klpgFSWLW1ZEs8svjfb7g4qWY0YS5imI82dTg+QahUvJ8YqAY0P10Uk8tTyh9ZGuYEZEMaeJYCF5BFuX552hsw=="; }; }; "append-tree-2.4.4" = { @@ -12772,7 +12907,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/appendable-cli-menu/-/appendable-cli-menu-2.0.0.tgz"; - sha1 = "dcfca9e509300e4c3b2d467965fe50c56fc75e66"; + sha512 = "nMIiFleSSoO+KLW4Qr5vLor5L6LB2lt43kaiuOl4CqDRdB07T4T/N94c2M8P17C/pLKG0IVeAYrrX61b61bajw=="; }; }; "application-config-1.0.1" = { @@ -12781,7 +12916,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/application-config/-/application-config-1.0.1.tgz"; - sha1 = "5aa2e2a5ed6abd2e5d1d473d3596f574044fe9e7"; + sha512 = "4/pxvg7ujMT7UD+b0OyXwlYntRnqZxjBUoA+vtYwdUA6Nxfx4rGPMaP3kQQcm1aZ9fnXl6Aw2sJy+ZID85/nug=="; }; }; "application-config-path-0.1.0" = { @@ -12790,7 +12925,7 @@ let version = "0.1.0"; src = fetchurl { url = "https://registry.npmjs.org/application-config-path/-/application-config-path-0.1.0.tgz"; - sha1 = "193c5f0a86541a4c66fba1e2dc38583362ea5e8f"; + sha512 = "lljTpVvFteShrHuKRvweZfa9o/Nc34Y8r5/1Lqh/yyKaspRT2J3fkEiSSk1YLG8ZSVyU7yHysRy9zcDDS2aH1Q=="; }; }; "applicationinsights-1.8.10" = { @@ -12835,7 +12970,7 @@ let version = "4.0.0"; src = fetchurl { url = "https://registry.npmjs.org/archive-type/-/archive-type-4.0.0.tgz"; - sha1 = "f92e72233056dfc6969472749c267bdb046b1d70"; + sha512 = "zV4Ky0v1F8dBrdYElwTvQhweQ0P7Kwc1aluqJsYtOBP01jXcWCyW2IEfI1YiqsG+Iy7ZR+o5LF1N+PGECBxHWA=="; }; }; "archiver-3.1.1" = { @@ -12871,7 +13006,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/archy/-/archy-1.0.0.tgz"; - sha1 = "f9c8c13757cc1dd7bc379ac77b2c62a5c2868c40"; + sha512 = "Xg+9RwCg/0p32teKdGMPTPnVXKD0w3DfHnFTficozsAgsvq2XenPJq/MYpzzQ/v8zrOyJn6Ds39VA4JIDwFfqw=="; }; }; "are-we-there-yet-1.1.7" = { @@ -12943,7 +13078,7 @@ let version = "1.0.4"; src = fetchurl { url = "https://registry.npmjs.org/argparse/-/argparse-1.0.4.tgz"; - sha1 = "2b12247b933001971addcbfe4e67d20fd395bbf4"; + sha512 = "nChgTocTucFvebsRskyrPUK/9GVYovJHGuQDVEKQw5wNhrhDlrKBQ7tjHsMmHr5qf45hUsxLkhDiGuX6g4/+LQ=="; }; }; "argparse-2.0.1" = { @@ -12970,7 +13105,7 @@ let version = "0.0.1"; src = fetchurl { url = "https://registry.npmjs.org/argsarray/-/argsarray-0.0.1.tgz"; - sha1 = "6e7207b4ecdb39b0af88303fa5ae22bda8df61cb"; + sha512 = "u96dg2GcAKtpTrBdDoFIM7PjcBA+6rSP0OR94MOReNRyUECL6MtQt5XXmRr4qrftYaef9+l5hcpO5te7sML1Cg=="; }; }; "arib-mpeg2ts-parser-3.0.15" = { @@ -13024,7 +13159,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/arr-diff/-/arr-diff-1.1.0.tgz"; - sha1 = "687c32758163588fef7de7b36fabe495eb1a399a"; + sha512 = "OQwDZUqYaQwyyhDJHThmzId8daf4/RFNLaeh3AevmSeZ5Y7ug4Ga/yKc6l6kTZOBW781rCj103ZuTh8GAsB3+Q=="; }; }; "arr-diff-2.0.0" = { @@ -13033,7 +13168,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/arr-diff/-/arr-diff-2.0.0.tgz"; - sha1 = "8f3b827f955a8bd669697e4a4256ac3ceae356cf"; + sha512 = "dtXTVMkh6VkEEA7OhXnN1Ecb8aAGFdZ1LFxtOCoqj4qkyOJMt7+qs6Ahdy6p/NQCPYsRSXXivhSB/J5E9jmYKA=="; }; }; "arr-diff-4.0.0" = { @@ -13042,7 +13177,7 @@ let version = "4.0.0"; src = fetchurl { url = "https://registry.npmjs.org/arr-diff/-/arr-diff-4.0.0.tgz"; - sha1 = "d6461074febfec71e7e15235761a329a5dc7c520"; + sha512 = "YVIQ82gZPGBebQV/a8dar4AitzCQs0jjXwMPZllpXMaGjXPYVUawSxQrRsjhjupyVxEvbHgUmIhKVlND+j02kA=="; }; }; "arr-filter-1.1.2" = { @@ -13051,7 +13186,7 @@ let version = "1.1.2"; src = fetchurl { url = "https://registry.npmjs.org/arr-filter/-/arr-filter-1.1.2.tgz"; - sha1 = "43fdddd091e8ef11aa4c45d9cdc18e2dff1711ee"; + sha512 = "A2BETWCqhsecSvCkWAeVBFLH6sXEUGASuzkpjL3GR1SlL/PWL6M3J8EAAld2Uubmh39tvkJTqC9LeLHCUKmFXA=="; }; }; "arr-flatten-1.1.0" = { @@ -13069,7 +13204,7 @@ let version = "2.0.2"; src = fetchurl { url = "https://registry.npmjs.org/arr-map/-/arr-map-2.0.2.tgz"; - sha1 = "3a77345ffc1cf35e2a91825601f9e58f2e24cac4"; + sha512 = "tVqVTHt+Q5Xb09qRkbu+DidW1yYzz5izWS2Xm2yFm7qJnmUfz4HPzNxbHkdRJbz2lrqI7S+z17xNYdFcBBO8Hw=="; }; }; "arr-rotate-1.0.0" = { @@ -13087,7 +13222,7 @@ let version = "2.1.0"; src = fetchurl { url = "https://registry.npmjs.org/arr-union/-/arr-union-2.1.0.tgz"; - sha1 = "20f9eab5ec70f5c7d215b1077b1c39161d292c7d"; + sha512 = "t5db90jq+qdgk8aFnxEkjqta0B/GHrM1pxzuuZz2zWsOXc5nKu3t+76s/PQBA8FTcM/ipspIH9jWG4OxCBc2eA=="; }; }; "arr-union-3.1.0" = { @@ -13096,7 +13231,7 @@ let version = "3.1.0"; src = fetchurl { url = "https://registry.npmjs.org/arr-union/-/arr-union-3.1.0.tgz"; - sha1 = "e39b09aea9def866a8f206e288af63919bae39c4"; + sha512 = "sKpyeERZ02v1FeCZT8lrfJq5u6goHCtpTAzPwJYe7c8SPFOboNjNg1vz2L4VTn9T4PQxEx13TbXLmYUcS6Ug7Q=="; }; }; "array-back-1.0.4" = { @@ -13105,7 +13240,7 @@ let version = "1.0.4"; src = fetchurl { url = "https://registry.npmjs.org/array-back/-/array-back-1.0.4.tgz"; - sha1 = "644ba7f095f7ffcf7c43b5f0dc39d3c1f03c063b"; + sha512 = "1WxbZvrmyhkNoeYcizokbmh5oiOCIfyvGtcqbK3Ls1v1fKcquzxnQSceOx6tzq7jmai2kFLWIpGND2cLhH6TPw=="; }; }; "array-back-2.0.0" = { @@ -13132,7 +13267,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/array-differ/-/array-differ-1.0.0.tgz"; - sha1 = "eff52e3758249d33be402b8bb8e564bb2b5d4031"; + sha512 = "LeZY+DZDRnvP7eMuQ6LHfCzUGxAAIViUBliK24P3hWXL6y4SortgR6Nim6xrkfSLlmH0+k+9NYNwVC2s53ZrYQ=="; }; }; "array-differ-3.0.0" = { @@ -13150,7 +13285,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/array-each/-/array-each-1.0.1.tgz"; - sha1 = "a794af0c05ab1752846ee753a1f211a05ba0c44f"; + sha512 = "zHjL5SZa68hkKHBFBK6DJCTtr9sfTCPCaph/L7tMSLcTFgy+zX7E+6q5UArbtOtMBCtxdICpfTCspRse+ywyXA=="; }; }; "array-equal-1.0.0" = { @@ -13159,7 +13294,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/array-equal/-/array-equal-1.0.0.tgz"; - sha1 = "8c2a5ef2472fd9ea742b04c77a75093ba2757c93"; + sha512 = "H3LU5RLiSsGXPhN+Nipar0iR0IofH+8r89G2y1tBKxQ/agagKyAjhkAFDRBfodP2caPrNKHpAWNIM/c9yeL7uA=="; }; }; "array-find-0.1.1" = { @@ -13168,7 +13303,7 @@ let version = "0.1.1"; src = fetchurl { url = "https://registry.npmjs.org/array-find/-/array-find-0.1.1.tgz"; - sha1 = "dc813845ad5a9afc35cb92b786c878d81b5b82ce"; + sha512 = "r40SlXgo1T2nsHx9FZ7Nju4QuQPUffepHeJb/juqVY1T5SVJ8hoDdo7RFHZRhdUf6+LT8s/6tKLjL6H9POMoGQ=="; }; }; "array-find-index-1.0.2" = { @@ -13177,7 +13312,7 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/array-find-index/-/array-find-index-1.0.2.tgz"; - sha1 = "df010aa1287e164bbda6f9723b0a96a1ec4187a1"; + sha512 = "M1HQyIXcBGtVywBt8WVdim+lrNaK7VHp99Qt5pSNziXznKHViIBbXWtfRTpEFpF/c4FdfxNAsCCwPp5phBYJtw=="; }; }; "array-flat-polyfill-1.0.1" = { @@ -13195,7 +13330,7 @@ let version = "1.1.1"; src = fetchurl { url = "https://registry.npmjs.org/array-flatten/-/array-flatten-1.1.1.tgz"; - sha1 = "9a5f699051b1e7073328f2a008968b64ea2955d2"; + sha512 = "PCVAQswWemu6UdxsDFFX/+gVeYqKAod3D3UVm91jHwynguOwAvYPhx8nNlM++NqRcK6CxxpUafjmhIdKiHibqg=="; }; }; "array-flatten-2.1.2" = { @@ -13222,7 +13357,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/array-ify/-/array-ify-1.0.0.tgz"; - sha1 = "9e528762b4a9066ad163a6962a364418e9626ece"; + sha512 = "c5AMf34bKdvPhQ7tBGhqkgKNUzMr4WUs+WDtC2ZUGOUncbxKMTvqxYctiseW3+L4bA8ec+GcZ6/A/FW4m8ukng=="; }; }; "array-includes-3.1.5" = { @@ -13240,7 +13375,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/array-initial/-/array-initial-1.1.0.tgz"; - sha1 = "2fa74b26739371c3947bd7a7adc73be334b3d795"; + sha512 = "BC4Yl89vneCYfpLrs5JU2aAu9/a+xWbeKhvISg9PT7eWFB9UlRvI+rKEtk6mgxWr3dSkk9gQ8hCrdqt06NXPdw=="; }; }; "array-iterate-1.1.4" = { @@ -13267,7 +13402,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/array-loop/-/array-loop-1.0.0.tgz"; - sha1 = "c033d086cf0d12af73aed5a99c0cedb37367b395"; + sha512 = "z87f4Wxh40inSJ3HUrhVz72WW3nRzMeUWPmrJL0F8CbL9c1bpHuUIS7zwZdXeUcFzuMmOd5s08UYHY6tKzu6yw=="; }; }; "array-lru-1.1.1" = { @@ -13276,7 +13411,7 @@ let version = "1.1.1"; src = fetchurl { url = "https://registry.npmjs.org/array-lru/-/array-lru-1.1.1.tgz"; - sha1 = "0c7e1b4e022ae166ff1e8448c595f3181fcd3337"; + sha512 = "DgyrnKyaWLX2YfWtjGcLXJU2/MAf2iYL8kgszqkfgnZvTW3iXfSohkP/ExAVgHRVWDwzdblCF/7Mpl51jUcyxQ=="; }; }; "array-parallel-0.1.3" = { @@ -13285,7 +13420,7 @@ let version = "0.1.3"; src = fetchurl { url = "https://registry.npmjs.org/array-parallel/-/array-parallel-0.1.3.tgz"; - sha1 = "8f785308926ed5aa478c47e64d1b334b6c0c947d"; + sha512 = "TDPTwSWW5E4oiFiKmz6RGJ/a80Y91GuLgUYuLd49+XBS75tYo8PNgaT2K/OxuQYqkoI852MDGBorg9OcUSTQ8w=="; }; }; "array-series-0.1.5" = { @@ -13294,7 +13429,7 @@ let version = "0.1.5"; src = fetchurl { url = "https://registry.npmjs.org/array-series/-/array-series-0.1.5.tgz"; - sha1 = "df5d37bfc5c2ef0755e2aa4f92feae7d4b5a972f"; + sha512 = "L0XlBwfx9QetHOsbLDrE/vh2t018w9462HM3iaFfxRiK83aJjAt/Ja3NMkOW7FICwWTlQBa3ZbL5FKhuQWkDrg=="; }; }; "array-shuffle-1.0.1" = { @@ -13303,7 +13438,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/array-shuffle/-/array-shuffle-1.0.1.tgz"; - sha1 = "7ea4882a356b4bca5f545e0b6e52eaf6d971557a"; + sha512 = "PBqgo1Y2XWSksBzq3GFPEb798ZrW2snAcmr4drbVeF/6MT/5aBlkGJEvu5A/CzXHf4EjbHOj/ZowatjlIiVidA=="; }; }; "array-slice-0.2.3" = { @@ -13312,7 +13447,7 @@ let version = "0.2.3"; src = fetchurl { url = "https://registry.npmjs.org/array-slice/-/array-slice-0.2.3.tgz"; - sha1 = "dd3cfb80ed7973a75117cdac69b0b99ec86186f5"; + sha512 = "rlVfZW/1Ph2SNySXwR9QYkChp8EkOEiTMO5Vwx60usw04i4nWemkm9RXmQqgkQFaLHsqLuADvjp6IfgL9l2M8Q=="; }; }; "array-slice-1.1.0" = { @@ -13348,7 +13483,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/array-to-sentence/-/array-to-sentence-1.1.0.tgz"; - sha1 = "c804956dafa53232495b205a9452753a258d39fc"; + sha512 = "YkwkMmPA2+GSGvXj1s9NZ6cc2LBtR+uSeWTy2IGi5MR1Wag4DdrcjTxA/YV/Fw+qKlBeXomneZgThEbm/wvZbw=="; }; }; "array-union-1.0.2" = { @@ -13357,7 +13492,7 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/array-union/-/array-union-1.0.2.tgz"; - sha1 = "9a34410e4f4e3da23dea375be5be70f24778ec39"; + sha512 = "Dxr6QJj/RdU/hCaBjOfxW+q6lyuVE6JFWIrAUpuOOhoJJoQ99cUn3igRaHVB5P9WrgFVN0FfArM3x0cueOU8ng=="; }; }; "array-union-2.1.0" = { @@ -13384,7 +13519,7 @@ let version = "1.0.3"; src = fetchurl { url = "https://registry.npmjs.org/array-uniq/-/array-uniq-1.0.3.tgz"; - sha1 = "af6ac877a25cc7f74e058894753858dfdb24fdb6"; + sha512 = "MNha4BWQ6JbwhFhj03YK552f7cb3AzoE8SzeljgChvL1dl3IcvggXVz1DilzySZkCja+CXuZbdW7yATchWn8/Q=="; }; }; "array-unique-0.2.1" = { @@ -13393,7 +13528,7 @@ let version = "0.2.1"; src = fetchurl { url = "https://registry.npmjs.org/array-unique/-/array-unique-0.2.1.tgz"; - sha1 = "a1d97ccafcbc2625cc70fadceb36a50c58b01a53"; + sha512 = "G2n5bG5fSUCpnsXz4+8FUkYsGPkNfLn9YvS66U5qbTIXI2Ynnlo4Bi42bWv+omKUCqz+ejzfClwne0alJWJPhg=="; }; }; "array-unique-0.3.2" = { @@ -13402,7 +13537,7 @@ let version = "0.3.2"; src = fetchurl { url = "https://registry.npmjs.org/array-unique/-/array-unique-0.3.2.tgz"; - sha1 = "a894b75d4bc4f6cd679ef3244a9fd8f46ae2d428"; + sha512 = "SleRWjh9JUud2wH1hPs9rZBZ33H6T9HOiL0uwGnGx9FpE6wKGyfWugmbkEOIs6qWrZhg0LWeLziLrEwQJhs5mQ=="; }; }; "array.prototype.find-2.2.0" = { @@ -13420,7 +13555,7 @@ let version = "0.0.6"; src = fetchurl { url = "https://registry.npmjs.org/arraybuffer.slice/-/arraybuffer.slice-0.0.6.tgz"; - sha1 = "f33b2159f0532a3f3107a272c0ccfbd1ad2979ca"; + sha512 = "6ZjfQaBSy6CuIH0+B0NrxMfDE5VIOCP/5gOqSpEIsaAZx9/giszzrXg6PZ7G51U/n88UmlAgYLNQ9wAnII7PJA=="; }; }; "arraybuffer.slice-0.0.7" = { @@ -13438,7 +13573,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/arrify/-/arrify-1.0.1.tgz"; - sha1 = "898508da2226f380df904728456849c1501a4b0d"; + sha512 = "3CYzex9M9FGQjCGMGyi6/31c8GJbgb0qGyrx5HWxPd0aCwh4cB2YjMb2Xf9UuoogrMrlO9cTqnB5rI5GHZTcUA=="; }; }; "arrify-2.0.1" = { @@ -13465,7 +13600,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/as-array/-/as-array-2.0.0.tgz"; - sha1 = "4f04805d87f8fce8e511bc2108f8e5e3a287d547"; + sha512 = "1Sd1LrodN0XYxYeZcN1J4xYZvmvTwD5tDWaPUGPIzH1mFsmzsPnVtd2exWhecMjtZk/wYWjNZJiD3b1SLCeJqg=="; }; }; "asap-2.0.6" = { @@ -13474,7 +13609,7 @@ let version = "2.0.6"; src = fetchurl { url = "https://registry.npmjs.org/asap/-/asap-2.0.6.tgz"; - sha1 = "e50347611d7e690943208bbdafebcbc2fb866d46"; + sha512 = "BSHWgDSAiKs50o2Re8ppvp3seVHXSRM44cdSsT9FfNEUUZLOGWVCsiWaRPWM1Znn+mqZ1OfVZ3z3DWEzSp7hRA=="; }; }; "asar-3.1.0" = { @@ -13492,7 +13627,7 @@ let version = "0.0.9"; src = fetchurl { url = "https://registry.npmjs.org/ascii-table/-/ascii-table-0.0.9.tgz"; - sha1 = "06a6604d6a55d4bf41a9a47d9872d7a78da31e73"; + sha512 = "xpkr6sCDIYTPqzvjG8M3ncw1YOTaloWZOyrUmicoEifBEKzQzt+ooUpRpQ/AbOoJfO/p2ZKiyp79qHThzJDulQ=="; }; }; "asciichart-1.5.25" = { @@ -13519,7 +13654,7 @@ let version = "0.3.0"; src = fetchurl { url = "https://registry.npmjs.org/ascli/-/ascli-0.3.0.tgz"; - sha1 = "5e66230e5219fe3e8952a4efb4f20fae596a813a"; + sha512 = "6JOAjpM6FuU/qdhg8xRnEjoVy8cnk3PygbrbJfSdbiRE+dUkl5h7nTvMoKMYI3qiMwM7amHSmsVOcdN/TFtdDQ=="; }; }; "asn1-0.1.11" = { @@ -13528,7 +13663,7 @@ let version = "0.1.11"; src = fetchurl { url = "https://registry.npmjs.org/asn1/-/asn1-0.1.11.tgz"; - sha1 = "559be18376d08a4ec4dbe80877d27818639b2df7"; + sha512 = "Fh9zh3G2mZ8qM/kwsiKwL2U2FmXxVsboP4x1mXjnhKHv3SmzaBZoYvxEQJz/YS2gnCgd8xlAVWcZnQyC9qZBsA=="; }; }; "asn1-0.2.3" = { @@ -13537,7 +13672,7 @@ let version = "0.2.3"; src = fetchurl { url = "https://registry.npmjs.org/asn1/-/asn1-0.2.3.tgz"; - sha1 = "dac8787713c9966849fc8180777ebe9c1ddf3b86"; + sha512 = "6i37w/+EhlWlGUJff3T/Q8u1RGmP5wgbiwYnOnbOqvtrPxT63/sYFyP9RcpxtxGymtfA075IvmOnL7ycNOWl3w=="; }; }; "asn1-0.2.6" = { @@ -13558,13 +13693,13 @@ let sha512 = "+I//4cYPccV8LdmBLiX8CYvf9Sp3vQsrqu2QNXRcrbiWvcx/UdlFiqUJJzxRQxgsZmvhXhn4cSKeSmoFjVdupA=="; }; }; - "asn1js-3.0.1" = { + "asn1js-3.0.3" = { name = "asn1js"; packageName = "asn1js"; - version = "3.0.1"; + version = "3.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/asn1js/-/asn1js-3.0.1.tgz"; - sha512 = "7RX/y1foVCz6QXITV3IycqP7FMAC/gbd680gHpO5xGWn8vri1mCJxRJuMFmmkXDQt2/ToeYAcf8VrkNu2cLW+A=="; + url = "https://registry.npmjs.org/asn1js/-/asn1js-3.0.3.tgz"; + sha512 = "Oz62ld3K3n6KlRUr4iZSMbSFDDPCW84G1yX7b/gWK5a0Ka7ZYOmCxFpu91lFdQygkBi2Hgoft1/WxRqFrONqLA=="; }; }; "assert-1.5.0" = { @@ -13591,7 +13726,7 @@ let version = "0.1.2"; src = fetchurl { url = "https://registry.npmjs.org/assert-plus/-/assert-plus-0.1.2.tgz"; - sha1 = "d93ffdbb67ac5507779be316a7d65146417beef8"; + sha512 = "BbJV8Hq6grYTokkHi/qKS34kfYIFYpu4wKd/H0dARsa6qOqEFH1wboxMwrccAmFjyRjkemjElaVC/sZSUMxHnA=="; }; }; "assert-plus-0.1.5" = { @@ -13600,7 +13735,7 @@ let version = "0.1.5"; src = fetchurl { url = "https://registry.npmjs.org/assert-plus/-/assert-plus-0.1.5.tgz"; - sha1 = "ee74009413002d84cec7219c6ac811812e723160"; + sha512 = "brU24g7ryhRwGCI2y+1dGQmQXiZF7TtIj583S96y0jjdajIe6wn8BuXyELYhvD22dtIxDQVFk04YTJwwdwOYJw=="; }; }; "assert-plus-0.2.0" = { @@ -13609,7 +13744,7 @@ let version = "0.2.0"; src = fetchurl { url = "https://registry.npmjs.org/assert-plus/-/assert-plus-0.2.0.tgz"; - sha1 = "d74e1b87e7affc0db8aadb7021f3fe48101ab234"; + sha512 = "u1L0ZLywRziOVjUhRxI0Qg9G+4RnFB9H/Rq40YWn0dieDgO7vAYeJz6jKAO6t/aruzlDFLAPkQTT87e+f8Imaw=="; }; }; "assert-plus-1.0.0" = { @@ -13618,7 +13753,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/assert-plus/-/assert-plus-1.0.0.tgz"; - sha1 = "f12e0f3c5d77b0b1cdd9146942e4e96c1e4dd525"; + sha512 = "NfJ4UzBCcQGLDlQq7nHxH+tv3kyZ0hHQqF5BO6J7tNJeP5do1llPr8dZ8zHonfhAu0PHAdMkSo+8o0wxg9lZWw=="; }; }; "assert-valid-glob-opts-1.0.0" = { @@ -13645,7 +13780,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/assign-symbols/-/assign-symbols-1.0.0.tgz"; - sha1 = "59667f41fadd4f20ccbc2bb96b8d4f7f78ec0367"; + sha512 = "Q+JC7Whu8HhmTdBph/Tq59IoRtoy6KAm5zzPv00WdujX82lbAL8K7WVjne7vdCsAmbF4AYaDOPyO3k0kl8qIrw=="; }; }; "ast-types-0.12.1" = { @@ -13681,7 +13816,7 @@ let version = "0.8.15"; src = fetchurl { url = "https://registry.npmjs.org/ast-types/-/ast-types-0.8.15.tgz"; - sha1 = "8eef0827f04dff0ec8857ba925abe3fea6194e52"; + sha512 = "8WsusRFHT6D2CpPTCLLLeIp4dN4pMEgmVX/jaSBsbMFObktStNdGOE1ZW4x8V/RABr1VtqruQgpabZyvzrrrww=="; }; }; "ast-types-0.9.6" = { @@ -13690,7 +13825,7 @@ let version = "0.9.6"; src = fetchurl { url = "https://registry.npmjs.org/ast-types/-/ast-types-0.9.6.tgz"; - sha1 = "102c9e9e9005d3e7e3829bf0c4fa24ee862ee9b9"; + sha512 = "qEdtR2UH78yyHX/AUNfXmJTlM48XoFZKBdwi1nzkI1mJL21cmbu0cvjxjpkXJ5NENMq42H+hNs8VLJcqXLerBQ=="; }; }; "astral-regex-1.0.0" = { @@ -13717,7 +13852,7 @@ let version = "0.1.22"; src = fetchurl { url = "https://registry.npmjs.org/async/-/async-0.1.22.tgz"; - sha1 = "0fc1aaa088a0e3ef0ebe2d8831bab0dcf8845061"; + sha512 = "2tEzliJmf5fHNafNwQLJXUasGzQCVctvsNkXmnlELHwypU0p08/rHohYvkqKIjyXpx+0rkrYv6QbhJ+UF4QkBg=="; }; }; "async-0.2.10" = { @@ -13726,7 +13861,7 @@ let version = "0.2.10"; src = fetchurl { url = "https://registry.npmjs.org/async/-/async-0.2.10.tgz"; - sha1 = "b6bbe0b0674b9d719708ca38de8c237cb526c3d1"; + sha512 = "eAkdoKxU6/LkKDBzLpT+t6Ff5EtfSF4wx1WfJiPEEV7WNLnDaRXk0oVysiEPm262roaachGexwUv94WhSgN5TQ=="; }; }; "async-0.2.9" = { @@ -13735,7 +13870,7 @@ let version = "0.2.9"; src = fetchurl { url = "https://registry.npmjs.org/async/-/async-0.2.9.tgz"; - sha1 = "df63060fbf3d33286a76aaf6d55a2986d9ff8619"; + sha512 = "OAtM6mexGteNKdU29wcUfRW+VuBr94A3hx9h9yzBnPaQAbKoW1ORd68XM4CCAOpdL5wlNFgO29hsY1TKv2vAKw=="; }; }; "async-0.9.2" = { @@ -13744,7 +13879,7 @@ let version = "0.9.2"; src = fetchurl { url = "https://registry.npmjs.org/async/-/async-0.9.2.tgz"; - sha1 = "aea74d5e61c1f899613bf64bda66d4c78f2fd17d"; + sha512 = "l6ToIJIotphWahxxHyzK9bnLR6kM4jJIIgLShZeqLY7iboHoGkdgFl7W2/Ivi4SkMJYGKqW8vSuk0uKUj6qsSw=="; }; }; "async-1.0.0" = { @@ -13753,7 +13888,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/async/-/async-1.0.0.tgz"; - sha1 = "f8fc04ca3a13784ade9e1641af98578cfbd647a9"; + sha512 = "5mO7DX4CbJzp9zjaFXusQQ4tzKJARjNB1Ih1pVBi8wkbmXy/xzIDgEMXxWePLzt2OdFwaxfneIlT1nCiXubrPQ=="; }; }; "async-1.5.2" = { @@ -13762,7 +13897,7 @@ let version = "1.5.2"; src = fetchurl { url = "https://registry.npmjs.org/async/-/async-1.5.2.tgz"; - sha1 = "ec6a61ae56480c0c3cb241c95618e20892f9672a"; + sha512 = "nSVgobk4rv61R9PUSDtYt7mPVB2olxNR5RWJcAsH676/ef11bUZwvu7+RGYrYauVdDPcO519v68wRhXQtxsV9w=="; }; }; "async-2.1.5" = { @@ -13771,7 +13906,7 @@ let version = "2.1.5"; src = fetchurl { url = "https://registry.npmjs.org/async/-/async-2.1.5.tgz"; - sha1 = "e587c68580994ac67fc56ff86d3ac56bdbe810bc"; + sha512 = "+g/Ncjbx0JSq2Mk03WQkyKvNh5q9Qvyo/RIqIqnmC5feJY70PNl2ESwZU2BhAB+AZPkHNzzyC2Dq2AS5VnTKhQ=="; }; }; "async-2.6.0" = { @@ -13834,7 +13969,7 @@ let version = "0.1.1"; src = fetchurl { url = "https://registry.npmjs.org/async-each-series/-/async-each-series-0.1.1.tgz"; - sha1 = "7617c1917401fd8ca4a28aadce3dbae98afeb432"; + sha512 = "p4jj6Fws4Iy2m0iCmI2am2ZNZCgbdgE+P8F/8csmn2vx7ixXrO2zGcuNsD46X5uZSVecmkEy/M06X2vG8KD6dQ=="; }; }; "async-exit-hook-2.0.1" = { @@ -13861,7 +13996,7 @@ let version = "1.2.0"; src = fetchurl { url = "https://registry.npmjs.org/async-iter-stream/-/async-iter-stream-1.2.0.tgz"; - sha1 = "91afbe5e9a7714fd1dd63d4a8dcb1284a3f72826"; + sha512 = "tgfagQdX8rQd1Xls/tpD+1iVOunxVLnGhnYmjm6mGzVtIKivpRF0yDGpm7H+hirUrT5k2Brwtf+QwsgA3ZHJeA=="; }; }; "async-limiter-1.0.1" = { @@ -13933,7 +14068,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/async-settle/-/async-settle-1.0.0.tgz"; - sha1 = "1d0a914bb02575bec8a8f3a74e5080f72b2c0c6b"; + sha512 = "VPXfB4Vk49z1LHHodrEQ6Xf7W4gg1w0dAPROHngx7qgDjqmIQ+fXmwgGXTW/ITLai0YLSvWepJOP9EVpMnEAcw=="; }; }; "async-single-1.0.5" = { @@ -13942,7 +14077,7 @@ let version = "1.0.5"; src = fetchurl { url = "https://registry.npmjs.org/async-single/-/async-single-1.0.5.tgz"; - sha1 = "125dd09de95d3ea30a378adbed021092179b03c9"; + sha512 = "I0SMZyvxwnr00advlzQbcfztaSEBv3Dw7Vg5i7pJVrXfjqHJSP1wljuOFKanBec5WKd+V4CIF4F9nhsukBikHA=="; }; }; "async-write-2.1.0" = { @@ -13951,7 +14086,7 @@ let version = "2.1.0"; src = fetchurl { url = "https://registry.npmjs.org/async-write/-/async-write-2.1.0.tgz"; - sha1 = "1e762817d849ce44bfac07925a42036787061b15"; + sha512 = "eKEYj1+jDgQ15jazjmelcPGXO77pa5epzlyXyEQcwwLtnACtBTCrxaW+96uXF2j4rzIikmUtVlzXwejx6iIhWw=="; }; }; "asyncjs-util-1.2.8" = { @@ -13978,7 +14113,7 @@ let version = "0.4.0"; src = fetchurl { url = "https://registry.npmjs.org/asynckit/-/asynckit-0.4.0.tgz"; - sha1 = "c79ed97f7f34cb8f2ba1bc9790bcc366474b4b79"; + sha512 = "Oei9OH4tRh0YqU3GxhX79dM/mwVgvbZJaSNaRk+bshkj0S5cfHcgYakreBjrHwatXKbz+IoIdYLxrKim2MjW0Q=="; }; }; "asyncmemo-1.0.0" = { @@ -13987,7 +14122,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/asyncmemo/-/asyncmemo-1.0.0.tgz"; - sha1 = "ef249dc869d6c07e7dfd4a22c8a18850bb39d7f1"; + sha512 = "Wcm02dkM5Bn5wLVygfB5DyWnt0h89ovRsgkr1YSBfr483O1eQOn+ZDTG6GwhucmwLOsEoIxkk94fbbcOdsMAdA=="; }; }; "at-least-node-1.0.0" = { @@ -14014,7 +14149,7 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/atomic-batcher/-/atomic-batcher-1.0.2.tgz"; - sha1 = "d16901d10ccec59516c197b9ccd8930689b813b4"; + sha512 = "EFGCRj4kLX1dHv1cDzTk+xbjBFj1GnJDpui52YmEcxxHHEWjYyT6l51U7n6WQ28osZH4S9gSybxe56Vm7vB61Q=="; }; }; "atomic-file-1.1.5" = { @@ -14068,7 +14203,7 @@ let version = "1.1.1"; src = fetchurl { url = "https://registry.npmjs.org/attach-ware/-/attach-ware-1.1.1.tgz"; - sha1 = "28f51393dd8bb8bdaad972342519bf09621a35a3"; + sha512 = "OpavlXWZkyE7m28fpCWF/RmxCukC1edukJp9IKjEpZs/O11H3896DkLpK7lMiL8ZDx2yxo9FrZQaeHkyJGcIuQ=="; }; }; "author-regex-1.0.0" = { @@ -14077,7 +14212,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/author-regex/-/author-regex-1.0.0.tgz"; - sha1 = "d08885be6b9bbf9439fe087c76287245f0a81450"; + sha512 = "KbWgR8wOYRAPekEmMXrYYdc7BRyhn2Ftk7KWfMUnQ43hFdojWEFRxhhRUm3/OFEdPa1r0KAvTTg9YQK57xTe0g=="; }; }; "auto-bind-4.0.0" = { @@ -14095,7 +14230,7 @@ let version = "0.0.4"; src = fetchurl { url = "https://registry.npmjs.org/autocast/-/autocast-0.0.4.tgz"; - sha1 = "ece7d92527ca37ea502f99e8f41fe44daf00dbce"; + sha512 = "yZrGUpWQTGfNpOabBN90vHuQrZcUWm0eNp9BzoFzysgQMPLLTlEp32cNFrluSMUCUAs4mfbubfjdyB+B7fB3TQ=="; }; }; "autoprefixer-9.8.8" = { @@ -14140,7 +14275,7 @@ let version = "1.18.0"; src = fetchurl { url = "https://registry.npmjs.org/aws-sdk/-/aws-sdk-1.18.0.tgz"; - sha1 = "00f35b2d27ac91b1f0d3ef2084c98cf1d1f0adc3"; + sha512 = "N3/gXMGLDaQHiQ0lE/LE4p2I2dwB7z+w7uZ9Z82ubfgBjWooX7IenQaLGx7lqq882mHpU14g0TzcLU/sDQhwNw=="; }; }; "aws-sdk-2.1122.0" = { @@ -14152,13 +14287,22 @@ let sha512 = "545VawhsCQ7yEx9jZKV0hTTW3FS/waycISWMvnNwqRfpU9o4FQ4DSu3je7ekn5yFKM+91dxJC+IfJgtIV8WaUw=="; }; }; - "aws-sdk-2.1134.0" = { + "aws-sdk-2.1137.0" = { + name = "aws-sdk"; + packageName = "aws-sdk"; + version = "2.1137.0"; + src = fetchurl { + url = "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.1137.0.tgz"; + sha512 = "iOm81glo7Y3bj6bO6pUEhFlclfANe0ExBJOZ8TxFx2mE8KsaPkofAy8dSzwbn357yOyVxur9tkZgXM2f05ynlA=="; + }; + }; + "aws-sdk-2.1138.0" = { name = "aws-sdk"; packageName = "aws-sdk"; - version = "2.1134.0"; + version = "2.1138.0"; src = fetchurl { - url = "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.1134.0.tgz"; - sha512 = "CvIcPSDzKFn4LRmk6GcQZYWtCxD/FwbbC1yaslvmpOYP8CndCmdz1MHMOPy/QyUyrH2WnUrVTAP2WdWqq6oCjQ=="; + url = "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.1138.0.tgz"; + sha512 = "81Bs7qVf1/NrZBDCVIPpynODNN8fvXLdbsK024VITKFjts6DpvWjWPCsRYvEtaksF6uypMx5D02nTYJ8RiXq9w=="; }; }; "aws-sign2-0.6.0" = { @@ -14167,7 +14311,7 @@ let version = "0.6.0"; src = fetchurl { url = "https://registry.npmjs.org/aws-sign2/-/aws-sign2-0.6.0.tgz"; - sha1 = "14342dd38dbcc94d0e5b87d763cd63612c0e794f"; + sha512 = "JnJpAS0p9RmixkOvW2XwDxxzs1bd4/VAGIl6Q0EC5YOo+p+hqIhtDhn/nmFnB/xUNXbLkpE2mOjgVIBRKD4xYw=="; }; }; "aws-sign2-0.7.0" = { @@ -14176,7 +14320,7 @@ let version = "0.7.0"; src = fetchurl { url = "https://registry.npmjs.org/aws-sign2/-/aws-sign2-0.7.0.tgz"; - sha1 = "b46e890934a9591f2d2f6f86d7e6a9f1b3fe76a8"; + sha512 = "08kcGqnYf/YmjoRhfxyu+CLxBjUtHLXLXX/vUfx9l2LYzG3c1m61nrpyFUZI6zeS+Li/wWMMidD9KgrqtGq3mA=="; }; }; "aws4-1.11.0" = { @@ -14293,7 +14437,7 @@ let version = "6.26.0"; src = fetchurl { url = "https://registry.npmjs.org/babel-code-frame/-/babel-code-frame-6.26.0.tgz"; - sha1 = "63fd43f7dc1e3bb7ce35947db8fe369a3f58c74b"; + sha512 = "XqYMR2dfdGMW+hd0IUZ2PwK+fGeFkOxZJ0wY+JaQAHzt1Zx8LcvpiZD2NiGkEG8qx0CfkAOr5xt76d1e8vG90g=="; }; }; "babel-core-7.0.0-bridge.0" = { @@ -14338,7 +14482,7 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/babel-plugin-jsx-pragmatic/-/babel-plugin-jsx-pragmatic-1.0.2.tgz"; - sha1 = "41e2beb8642235f34b2a7ab12ca39e07201b8e59"; + sha512 = "+qeGXSbHZwinZzO6R3wP+6XDKup83Pgg2B3TQt2zwfDdgC7NqT9Kd3ws7iqk53zAO/8iOIRU6VUyUzt2LDE3Eg=="; }; }; "babel-plugin-macros-2.8.0" = { @@ -14392,7 +14536,7 @@ let version = "6.18.0"; src = fetchurl { url = "https://registry.npmjs.org/babel-plugin-syntax-jsx/-/babel-plugin-syntax-jsx-6.18.0.tgz"; - sha1 = "0af32a9a6e13ca7a3fd5069e62d7b0f58d0d8946"; + sha512 = "qrPaCSo9c8RHNRHIotaufGbuOBN8rtdC4QrrFFc43vyWCCz7Kl7GL1PGaXtMGQZUXrkCjNEgxDfmAuAabr/rlw=="; }; }; "babel-plugin-transform-react-remove-prop-types-0.4.24" = { @@ -14419,7 +14563,7 @@ let version = "6.26.0"; src = fetchurl { url = "https://registry.npmjs.org/babel-runtime/-/babel-runtime-6.26.0.tgz"; - sha1 = "965c7058668e82b55d7bfe04ff2337bc8b5647fe"; + sha512 = "ITKNuq2wKlW1fJg9sSW52eepoYgZBggvOAHC0u/CYu/qxQ9EVzThCgR69BnSXLHjy2f7SY5zaQ4yt7H9ZVxY2g=="; }; }; "babel-types-6.26.0" = { @@ -14428,7 +14572,7 @@ let version = "6.26.0"; src = fetchurl { url = "https://registry.npmjs.org/babel-types/-/babel-types-6.26.0.tgz"; - sha1 = "a3b073f94ab49eb6fa55cd65227a334380632497"; + sha512 = "zhe3V/26rCWsEZK8kZN+HaQj5yQ1CilTObixFzKW1UWjqG7618Twz6YEsCnjfg5gBcJh02DrpCkS9h98ZqDY+g=="; }; }; "babel-walk-3.0.0-canary-5" = { @@ -14446,7 +14590,7 @@ let version = "0.0.1"; src = fetchurl { url = "https://registry.npmjs.org/babybird/-/babybird-0.0.1.tgz"; - sha1 = "da80c79c6d7441cdfec7c2ff2dcbd7c13ebdbea2"; + sha512 = "1Niw1j7GKl8L3vyKBKbzKeJ//uPoQpr5RCr5/GV2Fto+U8OqcTWXJH/Ats2lOMYP4sVjRHwSIH+HUPdLkORZ9w=="; }; }; "babylon-6.18.0" = { @@ -14464,7 +14608,7 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/babylon-walk/-/babylon-walk-1.0.2.tgz"; - sha1 = "3b15a5ddbb482a78b4ce9c01c8ba181702d9d6ce"; + sha512 = "/AcxC8CZ6YzmKNfiH3+XLjJDbhED3qxSrd4uFNvJ91pcsPuwMNXxfjwHxhiYOidhpis0BiBu/gupOdv2EYyglg=="; }; }; "bach-1.2.0" = { @@ -14473,7 +14617,7 @@ let version = "1.2.0"; src = fetchurl { url = "https://registry.npmjs.org/bach/-/bach-1.2.0.tgz"; - sha1 = "4b3ce96bf27134f79a1b414a51c14e34c3bd9880"; + sha512 = "bZOOfCb3gXBXbTFXq3OZtGR88LwGeJvzu6szttaIzymOTS4ZttBNOWSv7aLZja2EMycKtRYV0Oa8SNKH/zkxvg=="; }; }; "backo2-1.0.2" = { @@ -14482,7 +14626,7 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/backo2/-/backo2-1.0.2.tgz"; - sha1 = "31ab1ac8b129363463e35b3ebb69f4dfcfba7947"; + sha512 = "zj6Z6M7Eq+PBZ7PQxl5NT665MvJdAkzp0f60nAJ+sLaSCBPMwVak5ZegFbgVCzFcCJTKFoMizvM5Ld7+JrRJHA=="; }; }; "backoff-2.3.0" = { @@ -14491,7 +14635,7 @@ let version = "2.3.0"; src = fetchurl { url = "https://registry.npmjs.org/backoff/-/backoff-2.3.0.tgz"; - sha1 = "ee7c7e38093f92e472859db635e7652454fc21ea"; + sha512 = "ljr33cUQ/vyXE/60QuRO+WKGW4PzQ5OTWNXPWQwOTx5gh43q0pZocaVyXoU2gvFtasMIdIohdm9s01qoT6IJBQ=="; }; }; "backoff-2.4.1" = { @@ -14500,7 +14644,7 @@ let version = "2.4.1"; src = fetchurl { url = "https://registry.npmjs.org/backoff/-/backoff-2.4.1.tgz"; - sha1 = "2f68c50e0dd789dbefe24200a62efb04d2456d68"; + sha512 = "gd7froKGnmDsq2IczAXNLMQO6GXuqU6UUGlbo/R6MlaTmqFUozc7Ny3f5vRbcRwAK//lc0/hpaOKO7AP8zAv/Q=="; }; }; "backoff-2.5.0" = { @@ -14509,7 +14653,7 @@ let version = "2.5.0"; src = fetchurl { url = "https://registry.npmjs.org/backoff/-/backoff-2.5.0.tgz"; - sha1 = "f616eda9d3e4b66b8ca7fca79f695722c5f8e26f"; + sha512 = "wC5ihrnUXmR2douXmXLCe5O3zg3GKIyvRi/hi58a/XyRxVI+3/yM0PYueQOZXPXQ9pxBislYkw+sF9b7C/RuMA=="; }; }; "bagpipes-0.1.2" = { @@ -14572,7 +14716,7 @@ let version = "0.1.0"; src = fetchurl { url = "https://registry.npmjs.org/base-64/-/base-64-0.1.0.tgz"; - sha1 = "780a99c84e7d600260361511c4877613bf24f6bb"; + sha512 = "Y5gU45svrR5tI2Vt/X9GPd3L0HNIKzGu202EjxrXMpuc2V2CiKgemAbUUsqYmZJvPtCXoUKjNZwBJzsNScUbXA=="; }; }; "base-64-1.0.0" = { @@ -14599,7 +14743,7 @@ let version = "0.1.1"; src = fetchurl { url = "https://registry.npmjs.org/base62/-/base62-0.1.1.tgz"; - sha1 = "7b4174c2f94449753b11c2651c083da841a7b084"; + sha512 = "QtExujIOq/F672OkHmDi3CdkphOA1kSQ38gv03Ro3cplYQk831dq9GM3Q1oXAxpR5HNJjGjjjT2pHtBGAJu1jw=="; }; }; "base62-1.2.8" = { @@ -14617,7 +14761,7 @@ let version = "0.1.2"; src = fetchurl { url = "https://registry.npmjs.org/base64-arraybuffer/-/base64-arraybuffer-0.1.2.tgz"; - sha1 = "474df4a9f2da24e05df3158c3b1db3c3cd46a154"; + sha512 = "ewBKKVVPIl78B26mYQHYlaxR7NydMiD/GxwLNIwTAfLIE4xhN2Gxcy30//azq5UrejXjzGpWjcBu3NUJxzMMzg=="; }; }; "base64-arraybuffer-0.1.4" = { @@ -14626,7 +14770,7 @@ let version = "0.1.4"; src = fetchurl { url = "https://registry.npmjs.org/base64-arraybuffer/-/base64-arraybuffer-0.1.4.tgz"; - sha1 = "9818c79e059b1355f97e0428a017c838e90ba812"; + sha512 = "a1eIFi4R9ySrbiMuyTGx5e92uRH5tQY6kArNcFaKBUleIoLjdjBg7Zxm3Mqm3Kmkf27HLR/1fnxX9q8GQ7Iavg=="; }; }; "base64-arraybuffer-0.1.5" = { @@ -14635,7 +14779,7 @@ let version = "0.1.5"; src = fetchurl { url = "https://registry.npmjs.org/base64-arraybuffer/-/base64-arraybuffer-0.1.5.tgz"; - sha1 = "73926771923b5a19747ad666aa5cd4bf9c6e9ce8"; + sha512 = "437oANT9tP582zZMwSvZGy2nmSeAb8DW2me3y+Uv1Wp2Rulr8Mqlyrv3E7MLxmsiaPSMMDmiDVzgE+e8zlMx9g=="; }; }; "base64-js-0.0.8" = { @@ -14644,7 +14788,7 @@ let version = "0.0.8"; src = fetchurl { url = "https://registry.npmjs.org/base64-js/-/base64-js-0.0.8.tgz"; - sha1 = "1101e9544f4a76b1bc3b26d452ca96d7a35e7978"; + sha512 = "3XSA2cR/h/73EzlXXdU6YNycmYI7+kicTxks4eJg2g39biHR84slg2+des+p7iHYhbRg/udIS4TD53WabcOUkw=="; }; }; "base64-js-1.5.1" = { @@ -14680,7 +14824,7 @@ let version = "0.1.0"; src = fetchurl { url = "https://registry.npmjs.org/base64id/-/base64id-0.1.0.tgz"; - sha1 = "02ce0fdeee0cef4f40080e1e73e834f0b1bfce3f"; + sha512 = "DSjtfjhAsHl9J4OJj7e4+toV2zqxJrGwVd3CLlsCp8QmicvOn7irG0Mb8brOc/nur3SdO8lIbNlY1s1ZDJdUKQ=="; }; }; "base64id-1.0.0" = { @@ -14689,7 +14833,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/base64id/-/base64id-1.0.0.tgz"; - sha1 = "47688cb99bb6804f0e06d3e763b1c32e57d8e6b6"; + sha512 = "rz8L+d/xByiB/vLVftPkyY215fqNrmasrcJsYkVcm4TgJNz+YXKrFaFAWibSaHkiKoSgMDCb+lipOIRQNGYesw=="; }; }; "base64id-2.0.0" = { @@ -14716,7 +14860,7 @@ let version = "0.0.4"; src = fetchurl { url = "https://registry.npmjs.org/bash-color/-/bash-color-0.0.4.tgz"; - sha1 = "e9be8ce33540cada4881768c59bd63865736e913"; + sha512 = "ZNB4525U7BxT6v9C8LEtywyCgB4Pjnm7/bh+ru/Z9Ecxvg3fDjaJ6z305z9a61orQdbB1zqYHh5JbUqx4s4K0g=="; }; }; "basic-auth-1.1.0" = { @@ -14725,7 +14869,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/basic-auth/-/basic-auth-1.1.0.tgz"; - sha1 = "45221ee429f7ee1e5035be3f51533f1cdfd29884"; + sha512 = "CtGuTyWf3ig+sgRyC7uP6DM3N+5ur/p8L+FPfsd+BbIfIs74TFfCajZTHnCw6K5dqM0bZEbRIqRy1fAdiUJhTA=="; }; }; "basic-auth-2.0.1" = { @@ -14743,7 +14887,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/basic-auth-connect/-/basic-auth-connect-1.0.0.tgz"; - sha1 = "fdb0b43962ca7b40456a7c2bb48fe173da2d2122"; + sha512 = "kiV+/DTgVro4aZifY/hwRwALBISViL5NP4aReaR2EVJEObpbUBHIkdJh/YpcoEiYt7nBodZ6U2ajZeZvSxUCCg=="; }; }; "batch-0.6.1" = { @@ -14752,7 +14896,7 @@ let version = "0.6.1"; src = fetchurl { url = "https://registry.npmjs.org/batch/-/batch-0.6.1.tgz"; - sha1 = "dc34314f4e679318093fc760272525f94bf25c16"; + sha512 = "x+VAiMRL6UPkx+kudNvxTl6hB2XNNCG2r+7wixVfIYwu/2HKRXimwQyaumLjMveWvT2Hkd/cAJw+QBMfJ/EKVw=="; }; }; "bcfg-0.1.7" = { @@ -14779,7 +14923,7 @@ let version = "0.0.3"; src = fetchurl { url = "https://registry.npmjs.org/bcrypt-nodejs/-/bcrypt-nodejs-0.0.3.tgz"; - sha1 = "c60917f26dc235661566c681061c303c2b28842b"; + sha512 = "NmTbLm867btBHCBZ222FQXkQKzecB0KG6pTXFa6NeTVZaSnLfCsx7EK2PL3J+kX8xJThUquEBbhimRCKKZX9zA=="; }; }; "bcrypt-pbkdf-1.0.2" = { @@ -14788,7 +14932,7 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/bcrypt-pbkdf/-/bcrypt-pbkdf-1.0.2.tgz"; - sha1 = "a4301d389b6a43f9b67ff3ca11a3f6637e360e9e"; + sha512 = "qeFIXtP4MSoi6NLqO12WfqARWWuCKi2Rn/9hJLEmtB5yTNr9DqFWkJRCf2qShWzPeAMRnOgCrq0sg/KLv5ES9w=="; }; }; "bcryptjs-2.4.3" = { @@ -14797,7 +14941,7 @@ let version = "2.4.3"; src = fetchurl { url = "https://registry.npmjs.org/bcryptjs/-/bcryptjs-2.4.3.tgz"; - sha1 = "9ab5627b93e60621ff7cdac5da9733027df1d0cb"; + sha512 = "V/Hy/X9Vt7f3BbPJEi8BdVFMByHi+jNXrYkW3huaybV/kQ0KJg0Y6PkEMbn+zeT+i+SiKZ/HMqJGIIt4LZDqNQ=="; }; }; "bcrypto-5.4.0" = { @@ -14809,13 +14953,13 @@ let sha512 = "KDX2CR29o6ZoqpQndcCxFZAtYA1jDMnXU3jmCfzP44g++Cu7AHHtZN/JbrN/MXAg9SLvtQ8XISG+eVD9zH1+Jg=="; }; }; - "bcurl-0.1.10" = { + "bcurl-0.2.0" = { name = "bcurl"; packageName = "bcurl"; - version = "0.1.10"; + version = "0.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/bcurl/-/bcurl-0.1.10.tgz"; - sha512 = "NPxrIkc61tI2FvuibKW8IHaWs7YpgGvOWTgYEJYoE0vOiCvjuL6PXeKYq6bZqadeZfQ6v+R74qvj3Siiv+/Pvg=="; + url = "https://registry.npmjs.org/bcurl/-/bcurl-0.2.0.tgz"; + sha512 = "uBWc/w3AqjAfo6/+ODoRSoY/w/C7UaU/9AYcXjxgObTyUf3lvV5jCuAU/dSZyWysDyWBQkPzllOd7KZkwJHnwg=="; }; }; "bdb-1.3.0" = { @@ -14860,7 +15004,7 @@ let version = "1.1.1"; src = fetchurl { url = "https://registry.npmjs.org/beeper/-/beeper-1.1.1.tgz"; - sha1 = "e6d5ea8c5dad001304a70b22638447f69cb2f809"; + sha512 = "3vqtKL1N45I5dV0RdssXZG7X6pCqQrWPNOlBPZPrd+QkE2HEhR57Z04m0KtpbsZH73j+a3F8UD1TQnn+ExTvIA=="; }; }; "before-after-hook-2.2.2" = { @@ -14878,7 +15022,7 @@ let version = "0.7.0"; src = fetchurl { url = "https://registry.npmjs.org/bencode/-/bencode-0.7.0.tgz"; - sha1 = "811ed647c0118945e41bb4bbbdea9a2c78a17083"; + sha512 = "MG5AM/hkQIZoz/layZ1JK3xBTfqkLcJ3dJ7u2lx+6vZT1JWyK3OgEFGx1WFzWt6grGH6OSGQvRcCnhWKLp4f1Q=="; }; }; "bencode-0.8.0" = { @@ -14887,16 +15031,16 @@ let version = "0.8.0"; src = fetchurl { url = "https://registry.npmjs.org/bencode/-/bencode-0.8.0.tgz"; - sha1 = "3143448e82b0fadc745633ecc2a5f8fa87932f19"; + sha512 = "MWs3FqaWOGg5l+quIT9JTx7+SlcMbfPqqpWy+GOYi5rjZkX8i03tkNhAQn3pD2GAKENPpP3ScUR97ZUMffhHZA=="; }; }; - "bencode-2.0.2" = { + "bencode-2.0.3" = { name = "bencode"; packageName = "bencode"; - version = "2.0.2"; + version = "2.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/bencode/-/bencode-2.0.2.tgz"; - sha512 = "0ilVjnE2diLdbec/3KN14SP0KE85wh8v/FceNRMbAB2ioc3yTj9tgqdoK9tFEH++TZ10JreTS29qTwg7+SpTiQ=="; + url = "https://registry.npmjs.org/bencode/-/bencode-2.0.3.tgz"; + sha512 = "D/vrAD4dLVX23NalHwb8dSvsUsxeRPO8Y7ToKA015JQYq69MLDOMkC0uGZYA/MPpltLO8rt8eqFC2j8DxjTZ/w=="; }; }; "bep53-range-1.1.1" = { @@ -14923,7 +15067,7 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/better-assert/-/better-assert-1.0.2.tgz"; - sha1 = "40866b9e1b9e0b55b481894311e68faffaebc522"; + sha512 = "bYeph2DFlpK1XmGs6fvlLRUN29QISM3GBuUwSFsMY2XRx4AvC0WNCS57j4c/xGrK2RS24C1w3YoBOsw9fT46tQ=="; }; }; "better-opn-2.1.1" = { @@ -14995,7 +15139,7 @@ let version = "0.2.8"; src = fetchurl { url = "https://registry.npmjs.org/biased-opener/-/biased-opener-0.2.8.tgz"; - sha1 = "159a49b9a9714c1fb102f2e0ed1906fab6a450f4"; + sha512 = "0bQd7IRzo3sEFd+aUkkLL48CzFE6KjYkX+qqA32SRlIcujsIRuXO6/nCUJMSkfrTvATrFVD6wWuf5WJgp3oUHg=="; }; }; "big-integer-1.6.48" = { @@ -15040,7 +15184,7 @@ let version = "2.4.0"; src = fetchurl { url = "https://registry.npmjs.org/bignumber.js/-/bignumber.js-2.4.0.tgz"; - sha1 = "838a992da9f9d737e0f4b2db0be62bb09dd0c5e8"; + sha512 = "uw4ra6Cv483Op/ebM0GBKKfxZlSmn6NgFRby5L3yGTlunLj53KQgndDlqy2WVFOwgvurocApYkSud0aO+mvrpQ=="; }; }; "bignumber.js-9.0.0" = { @@ -15067,7 +15211,7 @@ let version = "3.1.0"; src = fetchurl { url = "https://registry.npmjs.org/bigspinner/-/bigspinner-3.1.0.tgz"; - sha1 = "dd3a862b2fedf66fee8471320069428d0d84427a"; + sha512 = "TYgKnylBrkMnOPpy0T6bHshllaAXCvSsKsg9IfuTjASUTff3VLWFd71gTF8tWnJ+GXe570fQOc7LVq5JPG1awg=="; }; }; "bin-links-3.0.1" = { @@ -15103,7 +15247,7 @@ let version = "0.3.0"; src = fetchurl { url = "https://registry.npmjs.org/binary/-/binary-0.3.0.tgz"; - sha1 = "9f60553bc5ce8c3386f3b553cff47462adecaa79"; + sha512 = "D4H1y5KYwpJgK8wk1Cue5LLPgmwHKYSChkbspQg5JtVuR5ulGckxfR62H3AE9UDkdMC8yyXlqYihuz3Aqg2XZg=="; }; }; "binary-extensions-1.13.1" = { @@ -15148,7 +15292,7 @@ let version = "0.2.5"; src = fetchurl { url = "https://registry.npmjs.org/binary-search-tree/-/binary-search-tree-0.2.5.tgz"; - sha1 = "7dbb3b210fdca082450dad2334c304af39bdc784"; + sha512 = "CvNVKS6iXagL1uGwLagSXz1hzSMezxOuGnFi5FHGKqaTO3nPPWrAbyALUzK640j+xOTVm7lzD9YP8W1f/gvUdw=="; }; }; "binaryextensions-4.18.0" = { @@ -15166,7 +15310,7 @@ let version = "1.2.1"; src = fetchurl { url = "https://registry.npmjs.org/bindings/-/bindings-1.2.1.tgz"; - sha1 = "14ad6113812d2d37d72e67b4cacb4bb726505f11"; + sha512 = "u4cBQNepWxYA55FunZSM7wMi55yQaN0otnhhilNoWHq0MfOfJeQx0v0mRRpolGOExPjZcl6FtB0BB8Xkb88F0g=="; }; }; "bindings-1.5.0" = { @@ -15193,7 +15337,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/bintrees/-/bintrees-1.0.1.tgz"; - sha1 = "0e655c9b9c2435eaab68bf4027226d2b55a34524"; + sha512 = "tbaUB1QpTIj4cKY8c1rvNAvEQXA+ekzHmbe4jzNfW3QWsF9GnnP/BRWyl6/qqS53heoYJ93naaFcm/jooONH8g=="; }; }; "bip174-2.1.0" = { @@ -15247,7 +15391,7 @@ let version = "1.1.5"; src = fetchurl { url = "https://registry.npmjs.org/bip66/-/bip66-1.1.5.tgz"; - sha1 = "01fa8748785ca70955d5011217d1b3139969ca22"; + sha512 = "nemMHz95EmS38a26XbbdxIYj5csHd3RMP3H5bwQknX0WYHF01qhpufP42mLOwVICuH2JmhIhXiWs89MfUGL7Xw=="; }; }; "bip68-1.0.4" = { @@ -15310,7 +15454,7 @@ let version = "0.1.0"; src = fetchurl { url = "https://registry.npmjs.org/bitfield/-/bitfield-0.1.0.tgz"; - sha1 = "b05d8b5f0d09f2df35a9db3b3a62d3808c46c457"; + sha512 = "M15ypXCxXd81FSOWL2ejHpB1TDKmz7Y55/VuqfExJi72sHW0JzE5dfV+hrSZafZtWRg/tdMsdte5dgwrlOM7nA=="; }; }; "bitfield-4.1.0" = { @@ -15331,13 +15475,13 @@ let sha512 = "wrDhHe7LUkqaytxgbsFXoemzHRv6e8FrVNWWsQCgUfmuVYW6ke44hoGc9VdpjgfIsJ/ejmCFA8wDtDqACNAvyw=="; }; }; - "bittorrent-dht-10.0.2" = { + "bittorrent-dht-10.0.4" = { name = "bittorrent-dht"; packageName = "bittorrent-dht"; - version = "10.0.2"; + version = "10.0.4"; src = fetchurl { - url = "https://registry.npmjs.org/bittorrent-dht/-/bittorrent-dht-10.0.2.tgz"; - sha512 = "V7+V6ZCfxHtn/wvaRuUvxucJhocb8StgKurQJUdHboVjNGWjALVG+VAYuZqz5iN+/j4vmd4GwqjR1ixYCMkyVA=="; + url = "https://registry.npmjs.org/bittorrent-dht/-/bittorrent-dht-10.0.4.tgz"; + sha512 = "Yx5cZXU4R+mUbxR2PbKdvOVTizOrePPF8NT3WGCXX5qzJVt8gF8gq9GMBWcmNjHUBYHVigDaRf030hxQ2dJWUg=="; }; }; "bittorrent-dht-6.4.2" = { @@ -15346,7 +15490,7 @@ let version = "6.4.2"; src = fetchurl { url = "https://registry.npmjs.org/bittorrent-dht/-/bittorrent-dht-6.4.2.tgz"; - sha1 = "8b40f8cee6bea87f2b34fd2ae0bd367a8b1247a6"; + sha512 = "DeBunF1nL/ckThYyU3AVtHFR195zNV06Ob6bKNXA1y6X56GSKMfkNCABB45YcbZevGMW1dytFlm59D/fws5lTg=="; }; }; "bittorrent-lsd-1.1.1" = { @@ -15382,7 +15526,7 @@ let version = "7.7.0"; src = fetchurl { url = "https://registry.npmjs.org/bittorrent-tracker/-/bittorrent-tracker-7.7.0.tgz"; - sha1 = "ffd2eabc141d36ed5c1817df7e992f91fd7fc65c"; + sha512 = "YFgPTVRhUMncZr8tM3ige7gnViMGhKoGF23qaiISRG8xtYebTGHrMSMXsTXo6O1KbtdEI+4jzvGY1K/wdT9GUA=="; }; }; "bittorrent-tracker-9.18.6" = { @@ -15400,7 +15544,7 @@ let version = "0.0.0"; src = fetchurl { url = "https://registry.npmjs.org/bitwise-xor/-/bitwise-xor-0.0.0.tgz"; - sha1 = "040a8172b5bb8cc562b0b7119f230b2a1a780e3d"; + sha512 = "3eOkZMBO04dRBn7551o6+IX9Ua7V+B/IubS7sffoa/VC3jdBM4YbuD+LjUNFojY7H+gptMUdTaQgHWTce4L3kw=="; }; }; "bl-1.2.3" = { @@ -15463,7 +15607,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/blake2s/-/blake2s-1.1.0.tgz"; - sha1 = "825a8fc536a5dc43193467f3124f7e9b78b21cef"; + sha512 = "lvCxvg+up7AmujO8vijTi4GsbIOuusWa+b/nN5+VAanFjzbauq0er5VzgjTC6pevhEO8SYTzY784zS2KQauO0A=="; }; }; "blakejs-1.2.1" = { @@ -15481,7 +15625,7 @@ let version = "0.1.81"; src = fetchurl { url = "https://registry.npmjs.org/blessed/-/blessed-0.1.81.tgz"; - sha1 = "f962d687ec2c369570ae71af843256e6d0ca1129"; + sha512 = "LoF5gae+hlmfORcG1M5+5XZi4LBmvlXTzwJWzUlPryN/SJdSflZvROM2TwkT0GMpq7oqT48NRd4GS7BiVBc5OQ=="; }; }; "blessed-contrib-4.11.0" = { @@ -15508,7 +15652,7 @@ let version = "0.0.2"; src = fetchurl { url = "https://registry.npmjs.org/blob/-/blob-0.0.2.tgz"; - sha1 = "b89562bd6994af95ba1e812155536333aa23cf24"; + sha512 = "BoCcDt8zBGShn6DawAGQw37s9SSs+fEjiZWDzyB+841PbOogcR2X7LGlM4sR3Zsiq/zoyl8MFWDfN6oDSlveBQ=="; }; }; "blob-0.0.5" = { @@ -15535,7 +15679,7 @@ let version = "0.0.9"; src = fetchurl { url = "https://registry.npmjs.org/block-stream/-/block-stream-0.0.9.tgz"; - sha1 = "13ebfe778a03205cfe03751481ebb4b3300c126a"; + sha512 = "OorbnJVPII4DuUKbjARAe8u8EfqOmkEEaSFIyoQ7OjTHn6kafxWl0wLgoZ2rXaYd7MyLcDaU4TmhfxtwgcccMQ=="; }; }; "block-stream2-2.1.0" = { @@ -15571,7 +15715,7 @@ let version = "1.1.1"; src = fetchurl { url = "https://registry.npmjs.org/bluebird/-/bluebird-1.1.1.tgz"; - sha1 = "744e9980145e2ebc41a9e34826f913096667fb33"; + sha512 = "2zqtRvlriJL+CZg6muZ9Hzhdvhp+NzT9xUHR47vaPNkq6cY+y2Uri2FHFq+ry5HYHIarulomYqiTWbxJmrOcQw=="; }; }; "bluebird-2.11.0" = { @@ -15580,7 +15724,7 @@ let version = "2.11.0"; src = fetchurl { url = "https://registry.npmjs.org/bluebird/-/bluebird-2.11.0.tgz"; - sha1 = "534b9033c022c9579c56ba3b3e5a5caafbb650e1"; + sha512 = "UfFSr22dmHPQqPP9XWHRhq+gWnHCYguQGkXQlbyPtW5qTnhFWA8/iXg765tH0cAjy7l/zPJ1aBTO0g5XgA7kvQ=="; }; }; "bluebird-2.9.34" = { @@ -15589,7 +15733,7 @@ let version = "2.9.34"; src = fetchurl { url = "https://registry.npmjs.org/bluebird/-/bluebird-2.9.34.tgz"; - sha1 = "2f7b4ec80216328a9fddebdf69c8d4942feff7d8"; + sha512 = "ZDzCb87X7/IP1uzQ5eJZB+WoQRGTnKL5DHWvPw6kkMbQseouiQIrEi3P1UGE0D1k0N5/+aP/5GMCyHZ1xYJyHQ=="; }; }; "bluebird-3.4.7" = { @@ -15598,7 +15742,7 @@ let version = "3.4.7"; src = fetchurl { url = "https://registry.npmjs.org/bluebird/-/bluebird-3.4.7.tgz"; - sha1 = "f72d760be09b7f76d08ed8fae98b289a8d05fab3"; + sha512 = "iD3898SR7sWVRHbiQv+sHUtHnMvC1o3nW5rAcqnq3uOn07DSAppZYUkIGslDz6gXC7HfunPe7YVBgoEJASPcHA=="; }; }; "bluebird-3.7.2" = { @@ -15625,7 +15769,7 @@ let version = "0.0.3"; src = fetchurl { url = "https://registry.npmjs.org/bmp-js/-/bmp-js-0.0.3.tgz"; - sha1 = "64113e9c7cf1202b376ed607bf30626ebe57b18a"; + sha512 = "epsm3Z92j5xwek9p97pVw3KbsNc0F4QnbYh+N93SpbJYuHFQQ/UAh6K+bKFGyLePH3Hudtl/Sa95Quqp0gX8IQ=="; }; }; "bmutex-0.1.6" = { @@ -15643,7 +15787,7 @@ let version = "4.11.6"; src = fetchurl { url = "https://registry.npmjs.org/bn.js/-/bn.js-4.11.6.tgz"; - sha1 = "53344adb14617a13f6e8dd2ce28905d1c0ba3215"; + sha512 = "XWwnNNFCuuSQ0m3r3C4LE3EiORltHd9M05pq6FOlVeiophzRbMo50Sbz1ehl8K3Z+jw9+vmgnXefY1hz8X+2wA=="; }; }; "bn.js-4.12.0" = { @@ -15670,7 +15814,7 @@ let version = "0.2.3"; src = fetchurl { url = "https://registry.npmjs.org/bncode/-/bncode-0.2.3.tgz"; - sha1 = "37f851dc8e47188a83fbc0f6fa4775cacc9a3296"; + sha512 = "IXGfySD68R/J2X/it8GZqAM+Vb3ByZvAlUi0Gysq4ZACq6hXGQ3YshKo0QS/f3S9wOWKjJnEjP6x3ELxqBnAOA=="; }; }; "bncode-0.5.3" = { @@ -15679,7 +15823,7 @@ let version = "0.5.3"; src = fetchurl { url = "https://registry.npmjs.org/bncode/-/bncode-0.5.3.tgz"; - sha1 = "e16661697452d436bf9886238cc791b08d66a61a"; + sha512 = "0P5VuWobU5Gwbeio8n9Jsdv0tE1IikrV9n4f7RsnXHNtxmdd/oeIO6QyoSEUAEyo5P6i3XMfBppi82WqNsT4JA=="; }; }; "bns-0.15.0" = { @@ -15697,7 +15841,7 @@ let version = "0.1.0"; src = fetchurl { url = "https://registry.npmjs.org/bodec/-/bodec-0.1.0.tgz"; - sha1 = "bc851555430f23c9f7650a75ef64c6a94c3418cc"; + sha512 = "Ylo+MAo5BDUq1KA3f3R/MFhh+g8cnHmo8bz3YPGhI1znrMaf77ol1sfvYJzsw3nTE+Y2GryfDxBaR+AqpAkEHQ=="; }; }; "body-0.1.0" = { @@ -15706,7 +15850,7 @@ let version = "0.1.0"; src = fetchurl { url = "https://registry.npmjs.org/body/-/body-0.1.0.tgz"; - sha1 = "e714fe28cd8848aa34cdf2c9f242bbe2e15d1cd8"; + sha512 = "aLm4/sBfk64P9psNjei/UfApreQwRT95KVNLCO2xSdDiLVoLfbN+sej1AqXF/Dr+2lcZTiiE3kqrhkqmIViYRw=="; }; }; "body-parser-1.12.4" = { @@ -15715,7 +15859,7 @@ let version = "1.12.4"; src = fetchurl { url = "https://registry.npmjs.org/body-parser/-/body-parser-1.12.4.tgz"; - sha1 = "090700c4ba28862a8520ef378395fdee5f61c229"; + sha512 = "fueabp0EDZKvebbSI94mGzVlJr3vViXA7q+W+52MFZCrcJjRlnTkPQjpua8+6M6WOh1swnw+DJiUrETWRIQn9g=="; }; }; "body-parser-1.18.2" = { @@ -15724,7 +15868,7 @@ let version = "1.18.2"; src = fetchurl { url = "https://registry.npmjs.org/body-parser/-/body-parser-1.18.2.tgz"; - sha1 = "87678a19d84b47d859b83199bd59bce222b10454"; + sha512 = "XIXhPptoLGNcvFyyOzjNXCjDYIbYj4iuXO0VU9lM0f3kYdG0ar5yg7C+pIc3OyoTlZXDu5ObpLTmS2Cgp89oDg=="; }; }; "body-parser-1.18.3" = { @@ -15733,7 +15877,7 @@ let version = "1.18.3"; src = fetchurl { url = "https://registry.npmjs.org/body-parser/-/body-parser-1.18.3.tgz"; - sha1 = "5b292198ffdd553b3a0f20ded0592b956955c8b4"; + sha512 = "YQyoqQG3sO8iCmf8+hyVpgHHOv0/hCEFiS4zTGUwTA1HjAFX66wRcNQrVCeJq9pgESMRvUAOvSil5MJlmccuKQ=="; }; }; "body-parser-1.19.0" = { @@ -15841,7 +15985,7 @@ let version = "3.5.0"; src = fetchurl { url = "https://registry.npmjs.org/bonjour/-/bonjour-3.5.0.tgz"; - sha1 = "8e890a183d8ee9a2393b3844c691a42bcf7bc9f5"; + sha512 = "RaVTblr+OnEli0r/ud8InrU7D+G0y6aJhlxaLa6Pwty4+xoxboF1BsUI45tujvRpbj9dQVoglChqonGAsjEBYg=="; }; }; "bonjour-service-1.0.12" = { @@ -15859,7 +16003,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/boolbase/-/boolbase-1.0.0.tgz"; - sha1 = "68dff5fbe60c51eb37725ea9e3ed310dcc1e776e"; + sha512 = "JZOSA7Mo9sNGB8+UjSgzdLtokWAky1zbztM3WRLCbZ70/3cTANmQmOdR7y2g+J0e2WXywy1yS468tY+IruqEww=="; }; }; "boolean-3.2.0" = { @@ -15877,7 +16021,7 @@ let version = "2.10.1"; src = fetchurl { url = "https://registry.npmjs.org/boom/-/boom-2.10.1.tgz"; - sha1 = "39c8918ceff5799f83f9492a848f625add0c766f"; + sha512 = "KbiZEa9/vofNcVJXGwdWWn25reQ3V3dHBWbS07FTF3/TOehLnm9GEhJV4T6ZvGPkShRpmUqYwnaCrkj0mRnP6Q=="; }; }; "bootstrap-3.4.1" = { @@ -15931,7 +16075,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/boundary/-/boundary-1.0.1.tgz"; - sha1 = "4d67dc2602c0cc16dd9bce7ebf87e948290f5812"; + sha512 = "AaLhxHwYVh55iOTJncV3DE5o7RakEUSSj64XXEWRTiIhlp7aDI8qR0vY/k8Uw0Z234VjZi/iG/WxfrvqYPUCww=="; }; }; "bower-1.8.14" = { @@ -15949,7 +16093,7 @@ let version = "0.2.1"; src = fetchurl { url = "https://registry.npmjs.org/bower-endpoint-parser/-/bower-endpoint-parser-0.2.1.tgz"; - sha1 = "8c4010a2900cdab07ea5d38f0bd03e9bbccef90f"; + sha512 = "Hn0mrtju2JFNMLDrseDbcc17kSJyj/KrkrrjIb1gPinqx2Nr3g/J5j43clUdQLOvT3QeuhpP1C29qTACSJKI5Q=="; }; }; "bower-json-0.6.0" = { @@ -15958,7 +16102,7 @@ let version = "0.6.0"; src = fetchurl { url = "https://registry.npmjs.org/bower-json/-/bower-json-0.6.0.tgz"; - sha1 = "326579b23c33e4ea828e4763c55cd81fd7650329"; + sha512 = "K3UdrU7QOfgkrddBHMGWE6KWZZDpTnChj13J6YjTW2CH1L4gdfInoAYPpNmjXGqAEvwNF7yeu9KW8MADC0mYjw=="; }; }; "bower-logger-0.2.1" = { @@ -15967,7 +16111,7 @@ let version = "0.2.1"; src = fetchurl { url = "https://registry.npmjs.org/bower-logger/-/bower-logger-0.2.1.tgz"; - sha1 = "0c1817c48063a88d96cc3d516c55e57fff5d9ecb"; + sha512 = "z1kTna8TAJnvqhnkXTDBe7d+CX6dNpdQbAcHbm6rIurWCkMDT1JiQZOwJ+EhY52DxEIv+67ENujUZak5eFu3oQ=="; }; }; "bowser-2.11.0" = { @@ -15985,7 +16129,7 @@ let version = "0.6.0"; src = fetchurl { url = "https://registry.npmjs.org/boxen/-/boxen-0.6.0.tgz"; - sha1 = "8364d4248ac34ff0ef1b2f2bf49a6c60ce0d81b6"; + sha512 = "yL8sYzt0avlYGOY6LqtECkGrJOY3cCLAbFPaNfgE+4fD45ZrdYqLdY8yF4bqyTkpfW9e6W0YqBkN7dIn/PrZoA=="; }; }; "boxen-1.3.0" = { @@ -16030,7 +16174,7 @@ let version = "0.0.6"; src = fetchurl { url = "https://registry.npmjs.org/bplist-creator/-/bplist-creator-0.0.6.tgz"; - sha1 = "fef069bee85975b2ddcc2264aaa7c50dc17a3c7e"; + sha512 = "qu/aUehciaUyo6O+VFJdb4UXoHr0Mcu2ZBxeTU/HKtl2z/jyBWSK/3+6r/OrehwJ8nG6T1HrFSEO/Uovbr87Pg=="; }; }; "bplist-creator-0.1.0" = { @@ -16048,7 +16192,7 @@ let version = "0.1.1"; src = fetchurl { url = "https://registry.npmjs.org/bplist-parser/-/bplist-parser-0.1.1.tgz"; - sha1 = "d60d5dcc20cba6dc7e1f299b35d3e1f95dafbae6"; + sha512 = "2AEM0FXy8ZxVLBuqX0hqt1gDwcnz2zygEkQ6zaD5Wko/sB9paUNwlpawrFtKeHUAQUOzjVy9AO4oeonqIHKA9Q=="; }; }; "bplist-parser-0.2.0" = { @@ -16102,7 +16246,7 @@ let version = "1.8.5"; src = fetchurl { url = "https://registry.npmjs.org/braces/-/braces-1.8.5.tgz"; - sha1 = "ba77962e12dff969d6b76711e914b737857bf6a7"; + sha512 = "xU7bpz2ytJl1bH9cgIurjpg/n8Gohy9GTw81heDYLJQ4RU60dlyJsa+atVF2pI0yMMvKxI9HkKwjePCj5XI1hw=="; }; }; "braces-2.3.2" = { @@ -16129,7 +16273,7 @@ let version = "0.0.3"; src = fetchurl { url = "https://registry.npmjs.org/bresenham/-/bresenham-0.0.3.tgz"; - sha1 = "abdab9e5b194e27c757cd314d8444314f299877a"; + sha512 = "wbMxoJJM1p3+6G7xEFXYNCJ30h2qkwmVxebkbwIl4OcnWtno5R3UT9VuYLfStlVNAQCmRjkGwjPFdfaPd4iNXw=="; }; }; "brfs-1.6.1" = { @@ -16147,7 +16291,7 @@ let version = "0.2.2"; src = fetchurl { url = "https://registry.npmjs.org/broadcast-stream/-/broadcast-stream-0.2.2.tgz"; - sha1 = "79e7bb14a9abba77f72ac9258220242a8fd3919d"; + sha512 = "d6iHc4P5YC2RvXv6qZxH3aoue88BiWhzCPki+i1Dj2igeZyNtUoMInloINRfnyrB7Fm+2f1q1bmQYhXQeKWwkQ=="; }; }; "broadway-0.3.6" = { @@ -16156,7 +16300,7 @@ let version = "0.3.6"; src = fetchurl { url = "https://registry.npmjs.org/broadway/-/broadway-0.3.6.tgz"; - sha1 = "7dbef068b954b7907925fd544963b578a902ba7a"; + sha512 = "zivf7KWx8ftTEsXaKfmve6wdSfbDJ6NLXwhwWN4Q1z5+/nsHWALP952KV9jJbJGwjZHEMZABHyuKqEAh3wb2kw=="; }; }; "brorand-1.1.0" = { @@ -16165,7 +16309,7 @@ let version = "1.1.0"; src = fetchurl { url = "https://registry.npmjs.org/brorand/-/brorand-1.1.0.tgz"; - sha1 = "12c25efe40a45e3c323eb8675a0a0ce57b22371f"; + sha512 = "cKV8tMCEpQs4hK/ik71d6LrPOnpkpGBR0wzxqr68g2m/LB2GxVYQroAjMJZRVM1Y4BCjCKc3vAamxSzOY2RP+w=="; }; }; "browser-hrtime-1.1.8" = { @@ -16183,7 +16327,7 @@ let version = "0.4.6"; src = fetchurl { url = "https://registry.npmjs.org/browser-launcher2/-/browser-launcher2-0.4.6.tgz"; - sha1 = "51598408a13f4c9c5b20eba44554b2c0b0ae4074"; + sha512 = "MAFiao5+mnAqHJ2RaB68aIuwKFdQzyK6KDmk1QIkKQbqqD6zdfm6aM4D1jT+jtvoO0UkdIX1WvyjL0ghoybNOw=="; }; }; "browser-or-node-1.3.0" = { @@ -16231,22 +16375,22 @@ let sha512 = "qhAVI1+Av2X7qelOfAIYwXONood6XlZE/fXaBSmW/T5SzLAmCgzi+eiWE7fUvbHaeNBQH13UftjpXxsfLkMpgw=="; }; }; - "browser-sync-client-2.27.9" = { + "browser-sync-client-2.27.10" = { name = "browser-sync-client"; packageName = "browser-sync-client"; - version = "2.27.9"; + version = "2.27.10"; src = fetchurl { - url = "https://registry.npmjs.org/browser-sync-client/-/browser-sync-client-2.27.9.tgz"; - sha512 = "FHW8kydp7FXo6jnX3gXJCpHAHtWNLK0nx839nnK+boMfMI1n4KZd0+DmTxHBsHsF3OHud4V4jwoN8U5HExMIdQ=="; + url = "https://registry.npmjs.org/browser-sync-client/-/browser-sync-client-2.27.10.tgz"; + sha512 = "KCFKA1YDj6cNul0VsA28apohtBsdk5Wv8T82ClOZPZMZWxPj4Ny5AUbrj9UlAb/k6pdxE5HABrWDhP9+cjt4HQ=="; }; }; - "browser-sync-ui-2.27.9" = { + "browser-sync-ui-2.27.10" = { name = "browser-sync-ui"; packageName = "browser-sync-ui"; - version = "2.27.9"; + version = "2.27.10"; src = fetchurl { - url = "https://registry.npmjs.org/browser-sync-ui/-/browser-sync-ui-2.27.9.tgz"; - sha512 = "rsduR2bRIwFvM8CX6iY/Nu5aWub0WB9zfSYg9Le/RV5N5DEyxJYey0VxdfWCnzDOoelassTDzYQo+r0iJno3qw=="; + url = "https://registry.npmjs.org/browser-sync-ui/-/browser-sync-ui-2.27.10.tgz"; + sha512 = "elbJILq4Uo6OQv6gsvS3Y9vRAJlWu+h8j0JDkF0X/ua+3S6SVbbiWnZc8sNOFlG7yvVGIwBED3eaYQ0iBo1Dtw=="; }; }; "browserify-16.5.2" = { @@ -16273,7 +16417,7 @@ let version = "3.0.1"; src = fetchurl { url = "https://registry.npmjs.org/browserify-cache-api/-/browserify-cache-api-3.0.1.tgz"; - sha1 = "96247e853f068fd6e0d45cc73f0bb2cd9778ef02"; + sha512 = "PbkGN4ZRebpNM0RSVxeXxds7FFkQZCaZAxRqdCkKde4XQSpKZBBwcFOpBgvmtnJVD2EjPH+Yyd60fLAg/GbCiA=="; }; }; "browserify-cipher-1.0.1" = { @@ -16300,7 +16444,7 @@ let version = "3.1.1"; src = fetchurl { url = "https://registry.npmjs.org/browserify-incremental/-/browserify-incremental-3.1.1.tgz"; - sha1 = "0713cb7587247a632a9f08cf1bd169b878b62a8a"; + sha512 = "PrFwOzLEdy27VRXK2uGjmjLq1aROBG7QoQq3eKanmm6Q8vuzT0ZNFCORHh3yJgNQQooXA9tOizGv4vCOmhrvRQ=="; }; }; "browserify-package-json-1.0.1" = { @@ -16309,7 +16453,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/browserify-package-json/-/browserify-package-json-1.0.1.tgz"; - sha1 = "98dde8aa5c561fd6d3fe49bbaa102b74b396fdea"; + sha512 = "CikZxJGNyNOBERbeALo0NUUeJgHs5NyEvuYChX/PcsBV91TAvEq4hYDaWSenSieT8XwAutNnS3FGvyzIMOughQ=="; }; }; "browserify-rsa-4.1.0" = { @@ -16336,7 +16480,7 @@ let version = "0.1.4"; src = fetchurl { url = "https://registry.npmjs.org/browserify-zlib/-/browserify-zlib-0.1.4.tgz"; - sha1 = "bb35f8a519f600e0fa6b8485241c979d0141fb2d"; + sha512 = "19OEpq7vWgsH6WkvkBJQDFvJS1uPcbFOQ4v9CU839dO+ZZXUZO6XpE6hNCqvlIIj+4fZvRiJ6DsAQ382GwiyTQ=="; }; }; "browserify-zlib-0.2.0" = { @@ -16381,7 +16525,7 @@ let version = "1.3.4"; src = fetchurl { url = "https://registry.npmjs.org/bs-recipes/-/bs-recipes-1.3.4.tgz"; - sha1 = "0d2d4d48a718c8c044769fdc4f89592dc8b69585"; + sha512 = "BXvDkqhDNxXEjeGM8LFkSbR+jzmP/CYpCiVKYn+soB1dDldeU15EBNDkwVXndKuX35wnNUaPd0qSoQEAkmQtMw=="; }; }; "bs-snippet-injector-2.0.1" = { @@ -16390,7 +16534,7 @@ let version = "2.0.1"; src = fetchurl { url = "https://registry.npmjs.org/bs-snippet-injector/-/bs-snippet-injector-2.0.1.tgz"; - sha1 = "61b5393f11f52559ed120693100343b6edb04dd5"; + sha512 = "4u8IgB+L9L+S5hknOj3ddNSb42436gsnGm1AuM15B7CdbkpQTyVWgIM5/JUBiKiRwGOR86uo0Lu/OsX+SAlJmw=="; }; }; "bs32-0.1.6" = { @@ -16408,7 +16552,7 @@ let version = "4.0.1"; src = fetchurl { url = "https://registry.npmjs.org/bs58/-/bs58-4.0.1.tgz"; - sha1 = "be161e76c354f6f788ae4071f63f34e8c4f0a42a"; + sha512 = "Ok3Wdf5vOIlBrgCvTq96gBkJw+JUEzdBgyaza5HLtPm7yTHkjRy8+JzNyHF7BHa0bNWOQIp3m5YF0nnFcOIKLw=="; }; }; "bs58check-2.1.2" = { @@ -16499,7 +16643,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/btoa-lite/-/btoa-lite-1.0.0.tgz"; - sha1 = "337766da15801210fdd956c22e9c6891ab9d0337"; + sha512 = "gvW7InbIyF8AicrqWoptdW08pUxuhq8BEgowNajy9RhiE86fmGAGl+bLKo6oB8QP0CkqHLowfN0oJdKC/J6LbA=="; }; }; "bubble-stream-error-0.0.1" = { @@ -16508,7 +16652,7 @@ let version = "0.0.1"; src = fetchurl { url = "https://registry.npmjs.org/bubble-stream-error/-/bubble-stream-error-0.0.1.tgz"; - sha1 = "55eb86846ecf26605e896aa2f1a31b3c9dcccb62"; + sha512 = "L9hlwJcJ+5p+Bx+FS2VdrOs61bDi9m1rLsZgx/CvUC0J/OPz71tLN/6/sP/X7i7KtQKzm6rzPhdjHdd+I8ZKkQ=="; }; }; "bubble-stream-error-1.0.0" = { @@ -16517,7 +16661,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/bubble-stream-error/-/bubble-stream-error-1.0.0.tgz"; - sha1 = "7dad97f17128da396169bf37ada4acb195361e30"; + sha512 = "Rqf0ly5H4HGt+ki/n3m7GxoR2uIGtNqezPlOLX8Vuo13j5/tfPuVvAr84eoGF7sYm6lKdbGnT/3q8qmzuT5Y9w=="; }; }; "budp-0.1.6" = { @@ -16607,7 +16751,7 @@ let version = "0.2.1"; src = fetchurl { url = "https://registry.npmjs.org/buffer-crc32/-/buffer-crc32-0.2.1.tgz"; - sha1 = "be3e5382fc02b6d6324956ac1af98aa98b08534c"; + sha512 = "vMfBIRp/wjlpueSz7Sb0OmO7C5SH58SSmbsT8G4D48YfO/Zgbr29xNXMpZVSC14ujVJfrZZH1Bl+kXYRQPuvfQ=="; }; }; "buffer-crc32-0.2.13" = { @@ -16616,7 +16760,7 @@ let version = "0.2.13"; src = fetchurl { url = "https://registry.npmjs.org/buffer-crc32/-/buffer-crc32-0.2.13.tgz"; - sha1 = "0d333e3f00eac50aa1454abd30ef8c2a5d9a7242"; + sha512 = "VO9Ht/+p3SN7SKWqcrgEzjGbRSJYTx+Q1pTQC0wrWqHx0vpJraQ6GtHx8tvcg1rlK1byhU5gccxgOgj7B0TDkQ=="; }; }; "buffer-equal-0.0.1" = { @@ -16625,7 +16769,7 @@ let version = "0.0.1"; src = fetchurl { url = "https://registry.npmjs.org/buffer-equal/-/buffer-equal-0.0.1.tgz"; - sha1 = "91bc74b11ea405bc916bc6aa908faafa5b4aac4b"; + sha512 = "RgSV6InVQ9ODPdLWJ5UAqBqJBOg370Nz6ZQtRzpt6nUjc8v0St97uJ4PYC6NztqIScrAXafKM3mZPMygSe1ggA=="; }; }; "buffer-equal-1.0.0" = { @@ -16634,7 +16778,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/buffer-equal/-/buffer-equal-1.0.0.tgz"; - sha1 = "59616b498304d556abd466966b22eeda3eca5fbe"; + sha512 = "tcBWO2Dl4e7Asr9hTGcpVrCe+F7DubpmqWCTbj4FHLmjqO2hIaC383acQubWtRJhdceqs5uBHs6Es+Sk//RKiQ=="; }; }; "buffer-equal-constant-time-1.0.1" = { @@ -16643,7 +16787,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/buffer-equal-constant-time/-/buffer-equal-constant-time-1.0.1.tgz"; - sha1 = "f8e71132f7ffe6e01a5c9697a4c6f3e48d5cc819"; + sha512 = "zRpUiDwd/xk6ADqPMATG8vc9VPrkck7T07OIx0gnjmJAnHnTVXNQG3vfvWNuiZIkwu9KrKdA1iJKfsfTVxE6NA=="; }; }; "buffer-equals-1.0.4" = { @@ -16652,7 +16796,7 @@ let version = "1.0.4"; src = fetchurl { url = "https://registry.npmjs.org/buffer-equals/-/buffer-equals-1.0.4.tgz"; - sha1 = "0353b54fd07fd9564170671ae6f66b9cf10d27f5"; + sha512 = "99MsCq0j5+RhubVEtKQgKaD6EM+UP3xJgIvQqwJ3SOLDUekzxMX1ylXBng+Wa2sh7mGT0W6RUly8ojjr1Tt6nA=="; }; }; "buffer-fill-1.0.0" = { @@ -16661,7 +16805,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/buffer-fill/-/buffer-fill-1.0.0.tgz"; - sha1 = "f8f78b76789888ef39f205cd637f68e702122b2c"; + sha512 = "T7zexNBwiiaCOGDg9xNX9PBmjrubblRkENuptryuI64URkXDFum9il/JGL8Lm8wYfAXpredVXXZz7eMHilimiQ=="; }; }; "buffer-from-0.1.2" = { @@ -16742,7 +16886,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/buffer-queue/-/buffer-queue-1.0.0.tgz"; - sha1 = "3d253fe2f0ab70e851d728712e8cd6f914a8c002"; + sha512 = "HNAysvwrmORbm5w5rB6yCz2Sab+ATCW6RSAOVWJmaRnPviPfuNO8+f3R0MyCJMUhL8sMx88LcawtIcfjHERhVA=="; }; }; "buffer-xor-1.0.3" = { @@ -16751,7 +16895,7 @@ let version = "1.0.3"; src = fetchurl { url = "https://registry.npmjs.org/buffer-xor/-/buffer-xor-1.0.3.tgz"; - sha1 = "26e61ed1422fb70dd42e6e36729ed51d855fe8d9"; + sha512 = "571s0T7nZWK6vB67HI5dyUF7wXiNcfaPPPTl6zYCNApANjIvYJTg7hlud/+cJpdAhS7dVzqMLmfhfHR3rAcOjQ=="; }; }; "buffers-0.1.1" = { @@ -16760,7 +16904,7 @@ let version = "0.1.1"; src = fetchurl { url = "https://registry.npmjs.org/buffers/-/buffers-0.1.1.tgz"; - sha1 = "b24579c3bed4d6d396aeee6d9a8ae7f5482ab7bb"; + sha512 = "9q/rDEGSb/Qsvv2qvzIzdluL5k7AaJOTrw23z9reQthrbF7is4CtlT0DXyO1oei2DCp4uojjzQ7igaSHp1kAEQ=="; }; }; "bufferstreams-1.1.3" = { @@ -16778,7 +16922,7 @@ let version = "1.3.0"; src = fetchurl { url = "https://registry.npmjs.org/bufferutil/-/bufferutil-1.3.0.tgz"; - sha1 = "69fdf13ad9d91222baee109945faadc431534f86"; + sha512 = "SFYBVhwk3e2Z6vaXyXTY0Ev0cKu50ndWvzgvo+2NhXN4AH2H+dn8ZkxzZ4kxrDmJgV8JvfeIjK5jp+tqzdNT5Q=="; }; }; "bufferutil-4.0.5" = { @@ -16805,7 +16949,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/bufferview/-/bufferview-1.0.1.tgz"; - sha1 = "7afd74a45f937fa422a1d338c08bbfdc76cd725d"; + sha512 = "q87jdvsZ/sEngmDUvPT/PJsBGCi998c3B1U/6IN1uGg+R2HrTFJUDccXZEx6OxpuLySyBDGXc7vkSt4BXTyKxA=="; }; }; "bufio-1.0.7" = { @@ -16832,7 +16976,7 @@ let version = "1.1.1"; src = fetchurl { url = "https://registry.npmjs.org/builtin-modules/-/builtin-modules-1.1.1.tgz"; - sha1 = "270f076c5a72c02f5b65a47df94c5fe3a278892f"; + sha512 = "wxXCdllwGhI2kCC0MnvTGYTMvnVZTvqgypkiTI8Pa5tcz2i6VqsqwYGgqwXji+4RgCzms6EajE4IxiUH6HH8nQ=="; }; }; "builtin-modules-3.3.0" = { @@ -16850,7 +16994,7 @@ let version = "3.0.0"; src = fetchurl { url = "https://registry.npmjs.org/builtin-status-codes/-/builtin-status-codes-3.0.0.tgz"; - sha1 = "85982878e21b98e1c66425e03d0174788f569ee8"; + sha512 = "HpGFw18DgFWlncDfjTa2rcQ4W88O1mC8e8yZ2AvQY5KDaktSTwo+KRf6nHK6FRI5FyRyb/5T6+TSxfP7QyGsmQ=="; }; }; "builtins-1.0.3" = { @@ -16859,7 +17003,7 @@ let version = "1.0.3"; src = fetchurl { url = "https://registry.npmjs.org/builtins/-/builtins-1.0.3.tgz"; - sha1 = "cb94faeb61c8696451db36534e1422f94f0aee88"; + sha512 = "uYBjakWipfaO/bXI7E8rq6kpwHRZK5cNYrUv2OzZSI/FvmdMyXJ2tG9dKcjEC5YHmHpUAwsargWIZNWdxb/bnQ=="; }; }; "builtins-4.1.0" = { @@ -16895,7 +17039,7 @@ let version = "1.5.1"; src = fetchurl { url = "https://registry.npmjs.org/bunyan/-/bunyan-1.5.1.tgz"; - sha1 = "5f6e7d44c43b952f56b0f41309e3ab12391b4e2d"; + sha512 = "gbSG0cjSr48Ifz5f9OyGcKPGKJewbK6F+KSQ59/KzjOjQK6Kox88JWk94xyIAOTzNPgbS5MLCkOyLdtVWPV4Cg=="; }; }; "bunyan-1.8.12" = { @@ -16904,7 +17048,7 @@ let version = "1.8.12"; src = fetchurl { url = "https://registry.npmjs.org/bunyan/-/bunyan-1.8.12.tgz"; - sha1 = "f150f0f6748abdd72aeae84f04403be2ef113797"; + sha512 = "dmDUbGHeGcvCDLRFOscZkwx1ZO/aFz3bJOCi5nCgzdhFGPxwK+y5AcDBnqagNGlJZ7lje/l6JUEz9mQcutttdg=="; }; }; "bunyan-1.8.15" = { @@ -16940,7 +17084,7 @@ let version = "0.2.14"; src = fetchurl { url = "https://registry.npmjs.org/busboy/-/busboy-0.2.14.tgz"; - sha1 = "6c2a622efcf47c57bbbe1e2a9c37ad36c7925453"; + sha512 = "InWFDomvlkEj+xWLBfU3AvnbVYqeTWmQopiW0tWWEy5yehYm2YkGEc59sUmw/4ty5Zj/b0WHGs1LgecuBSBGrg=="; }; }; "busboy-0.3.1" = { @@ -16985,7 +17129,7 @@ let version = "5.0.0"; src = fetchurl { url = "https://registry.npmjs.org/byline/-/byline-5.0.0.tgz"; - sha1 = "741c5216468eadc457b03410118ad77de8c1ddb1"; + sha512 = "s6webAy+R4SR8XVuJWt2V2rGvhnrhxN+9S15GNuTK3wKPOXFF6RNc+8ug2XhH+2s4f+uudG4kUVYmYOQWL2g0Q=="; }; }; "byte-size-7.0.1" = { @@ -17003,7 +17147,7 @@ let version = "2.1.0"; src = fetchurl { url = "https://registry.npmjs.org/byte-stream/-/byte-stream-2.1.0.tgz"; - sha1 = "32eecba6253821d69510b9cf34b315ce3e55b31a"; + sha512 = "akvDEd13LzGRu3OIoDyfgYT8GBM6CTImP3gLUZSVZQ27Epjy96yiMudZbc3axURCOn1s5QIVj2tTOtb4IBJ2FA=="; }; }; "bytebuffer-3.5.5" = { @@ -17012,7 +17156,7 @@ let version = "3.5.5"; src = fetchurl { url = "https://registry.npmjs.org/bytebuffer/-/bytebuffer-3.5.5.tgz"; - sha1 = "7a6faf1a13514b083f1fcf9541c4c9bfbe7e7fd3"; + sha512 = "z2+y+RwT1gZzk4h06++Jzj9ojR//w0hbr0vKqR7PwNbynAC4cJKaopb3ANVtG/0tRgJLEa4nGIOGIMwJI3XkSQ=="; }; }; "bytes-0.1.0" = { @@ -17021,7 +17165,7 @@ let version = "0.1.0"; src = fetchurl { url = "https://registry.npmjs.org/bytes/-/bytes-0.1.0.tgz"; - sha1 = "c574812228126d6369d1576925a8579db3f8e5a2"; + sha512 = "zTSmfpu7b+Mll4T9ZjTYUO3Q6+m+F3ZEQ515ZECaAFhmmHiRl/UcdcAsuFyVklbMRo9GWyRyqTsB6C6ahjGnVA=="; }; }; "bytes-0.2.1" = { @@ -17030,7 +17174,7 @@ let version = "0.2.1"; src = fetchurl { url = "https://registry.npmjs.org/bytes/-/bytes-0.2.1.tgz"; - sha1 = "555b08abcb063f8975905302523e4cd4ffdfdf31"; + sha512 = "odbk8/wGazOuC1v8v4phoV285/yx8UN5kfQhhuxaVcceig4OUiCZQBtaEtmA1Q78QSTN9iXOQ7X2EViybrEvtQ=="; }; }; "bytes-1.0.0" = { @@ -17039,7 +17183,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/bytes/-/bytes-1.0.0.tgz"; - sha1 = "3569ede8ba34315fab99c3e92cb04c7220de1fa8"; + sha512 = "/x68VkHLeTl3/Ll8IvxdwzhrT+IyKc52e/oyHhA2RwqPqswSnjVbSddfPRwAsJtbilMAPSRWwAlpxdYsSWOTKQ=="; }; }; "bytes-2.1.0" = { @@ -17048,7 +17192,7 @@ let version = "2.1.0"; src = fetchurl { url = "https://registry.npmjs.org/bytes/-/bytes-2.1.0.tgz"; - sha1 = "ac93c410e2ffc9cc7cf4b464b38289067f5e47b4"; + sha512 = "k9VSlRfRi5JYyQWMylSOgjld96ta1qaQUIvmn+na0BzViclH04PBumewv4z5aeXNkn6Z/gAN5FtPeBLvV20F9w=="; }; }; "bytes-3.0.0" = { @@ -17057,7 +17201,7 @@ let version = "3.0.0"; src = fetchurl { url = "https://registry.npmjs.org/bytes/-/bytes-3.0.0.tgz"; - sha1 = "d32815404d689699f85a4ea4fa8755dd13a96048"; + sha512 = "pMhOfFDPiv9t5jjIXkHosWmkSyQbvsgEVNkz0ERHbuLh2T/7j4Mqqpz523Fe8MVY89KC6Sh/QfS2sM+SjgFDcw=="; }; }; "bytes-3.1.0" = { @@ -17105,13 +17249,13 @@ let sha512 = "VVdYzXEn+cnbXpFgWs5hTT7OScegHVmLhJIR8Ufqk3iFD6A6j5iSX1KuBTfNEv4tdJWE2PzA6IVFtcLC7fN9wQ=="; }; }; - "cacache-16.0.7" = { + "cacache-16.1.0" = { name = "cacache"; packageName = "cacache"; - version = "16.0.7"; + version = "16.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/cacache/-/cacache-16.0.7.tgz"; - sha512 = "a4zfQpp5vm4Ipdvbj+ZrPonikRhm6WBEd4zT1Yc1DXsmAxrPgDwWBLF/u/wTVXSFPIgOJ1U3ghSa2Xm4s3h28w=="; + url = "https://registry.npmjs.org/cacache/-/cacache-16.1.0.tgz"; + sha512 = "Pk4aQkwCW82A4jGKFvcGkQFqZcMspfP9YWq9Pr87/ldDvlWf718zeI6KWCdKt/jeihu6BytHRUicJPB1K2k8EQ=="; }; }; "cache-base-1.0.1" = { @@ -17183,7 +17327,7 @@ let version = "2.1.4"; src = fetchurl { url = "https://registry.npmjs.org/cacheable-request/-/cacheable-request-2.1.4.tgz"; - sha1 = "0d808801b6342ad33c91df9d0b44dc09b91e5c3d"; + sha512 = "vag0O2LKZ/najSoUwDbVlnlCFvhBE/7mGTY2B5FgCBDcRD+oVV1HYTOwM6JZfMg/hIcM6IwnTZ1uQQL5/X3xIQ=="; }; }; "cacheable-request-6.1.0" = { @@ -17228,7 +17372,7 @@ let version = "1.4.1"; src = fetchurl { url = "https://registry.npmjs.org/calfinated/-/calfinated-1.4.1.tgz"; - sha1 = "5037e0e77d442b3353e131b04b7bbaf1198ddc6d"; + sha512 = "l9cVTzFgfK8z+aFkrvybV4ZmIrCMmPe05s/NqXJHiLFv0LFbYi+WsrgCHsbJ3NyhxWgsovX1gE3+hRA+eNooMA=="; }; }; "call-bind-1.0.2" = { @@ -17246,7 +17390,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/call-me-maybe/-/call-me-maybe-1.0.1.tgz"; - sha1 = "26d208ea89e37b5cbde60250a15f031c16a4d66b"; + sha512 = "wCyFsDQkKPwwF8BDwOiWNx/9K45L/hvggQiDbve+viMNMQnWhrlYIuBk09offfwCRtCO9P6XwUttufzU11WCVw=="; }; }; "caller-1.0.1" = { @@ -17255,7 +17399,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/caller/-/caller-1.0.1.tgz"; - sha1 = "b851860f70e195db3d277395aa1a7e23ea30ecf5"; + sha512 = "tfj+ErW/0SbOyfoXriRtdjCMTwrZAvLXj2jHqlh8YCcgoZVzUI22E/JJLxbiuZqDs0Ke7BuRrHTVuxm3EwYbJQ=="; }; }; "caller-callsite-2.0.0" = { @@ -17264,7 +17408,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/caller-callsite/-/caller-callsite-2.0.0.tgz"; - sha1 = "847e0fce0a223750a9a027c54b33731ad3154134"; + sha512 = "JuG3qI4QOftFsZyOn1qq87fq5grLIyk1JYd5lJmdA+fG7aQ9pA/i3JIJGcO3q0MrRcHlOt1U+ZeHW8Dq9axALQ=="; }; }; "caller-callsite-4.1.0" = { @@ -17282,7 +17426,7 @@ let version = "0.1.0"; src = fetchurl { url = "https://registry.npmjs.org/caller-path/-/caller-path-0.1.0.tgz"; - sha1 = "94085ef63581ecd3daa92444a8fe94e82577751f"; + sha512 = "UJiE1otjXPF5/x+T3zTnSFiTOEmJoGTD9HmBoxnCUwho61a2eSNn/VwtwuIBDAo2SEOv1AJ7ARI5gCmohFLu/g=="; }; }; "caller-path-2.0.0" = { @@ -17291,7 +17435,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/caller-path/-/caller-path-2.0.0.tgz"; - sha1 = "468f83044e369ab2010fac5f06ceee15bb2cb1f4"; + sha512 = "MCL3sf6nCSXOwCTzvPKhN18TU7AHTvdtam8DAogxcrJ8Rjfbbg7Lgng64H9Iy+vUV6VGFClN/TyxBkAebLRR4A=="; }; }; "caller-path-3.0.1" = { @@ -17309,7 +17453,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/callsite/-/callsite-1.0.0.tgz"; - sha1 = "280398e5d664bd74038b6f0905153e6e8af1bc20"; + sha512 = "0vdNRFXn5q+dtOqjfFtmtlI9N2eVZ7LMyEV2iKC5mEEFvSg/69Ml6b/WU2qF8W1nLRa0wiSrDT3Y5jOHZCwKPQ=="; }; }; "callsites-0.2.0" = { @@ -17318,7 +17462,7 @@ let version = "0.2.0"; src = fetchurl { url = "https://registry.npmjs.org/callsites/-/callsites-0.2.0.tgz"; - sha1 = "afab96262910a7f33c19a5775825c69f34e350ca"; + sha512 = "Zv4Dns9IbXXmPkgRRUjAaJQgfN4xX5p6+RQFhWUqscdvvK2xK/ZL8b3IXIJsj+4sD+f24NwnWy2BY8AJ82JB0A=="; }; }; "callsites-2.0.0" = { @@ -17327,7 +17471,7 @@ let version = "2.0.0"; src = fetchurl { url = "https://registry.npmjs.org/callsites/-/callsites-2.0.0.tgz"; - sha1 = "06eb84f00eea413da86affefacbffb36093b3c50"; + sha512 = "ksWePWBloaWPxJYQ8TL0JHvtci6G5QTKwQ95RcWAa/lzoAKuAOflGdAK92hpHXjkwb8zLxoLNUoNYZgVsaJzvQ=="; }; }; "callsites-3.1.0" = { @@ -17345,7 +17489,7 @@ let version = "3.0.0"; src = fetchurl { url = "https://registry.npmjs.org/camel-case/-/camel-case-3.0.0.tgz"; - sha1 = "ca3c3688a4e9cf3a4cda777dc4dcbc713249cf73"; + sha512 = "+MbKztAYHXPr1jNTSKQF52VpcFjwY5RkR7fxksV8Doo4KAYc5Fl4UJRgthBbTmEx8C54DqahhbLJkDwjI3PI/w=="; }; }; "camel-case-4.1.1" = { @@ -17372,7 +17516,7 @@ let version = "1.2.1"; src = fetchurl { url = "https://registry.npmjs.org/camelcase/-/camelcase-1.2.1.tgz"; - sha1 = "9bb5304d2e0b56698b2c758b08a3eaa9daa58a39"; + sha512 = "wzLkDa4K/mzI1OSITC+DUyjgIl/ETNHE9QvYgy6J6Jvqyyz4C0Xfd+lQhb19sX2jMpZV4IssUn0VDVmglV+s4g=="; }; }; "camelcase-2.1.1" = { @@ -17381,7 +17525,7 @@ let version = "2.1.1"; src = fetchurl { url = "https://registry.npmjs.org/camelcase/-/camelcase-2.1.1.tgz"; - sha1 = "7c1d16d679a1bbe59ca02cacecfb011e201f5a1f"; + sha512 = "DLIsRzJVBQu72meAKPkWQOLcujdXT32hwdfnkI1frSiSRMK1MofjKHf+MEx0SB6fjEFXL8fBDv1dKymBlOp4Qw=="; }; }; "camelcase-3.0.0" = { @@ -17390,7 +17534,7 @@ let version = "3.0.0"; src = fetchurl { url = "https://registry.npmjs.org/camelcase/-/camelcase-3.0.0.tgz"; - sha1 = "32fc4b9fcdaf845fcdf7e73bb97cac2261f0ab0a"; + sha512 = "4nhGqUkc4BqbBBB4Q6zLuD7lzzrHYrjKGeYaEji/3tFR5VdJu9v+LilhGIVe8wxEJPPOeWo7eg8dwY13TZ1BNg=="; }; }; "camelcase-4.1.0" = { @@ -17399,7 +17543,7 @@ let version = "4.1.0"; src = fetchurl { url = "https://registry.npmjs.org/camelcase/-/camelcase-4.1.0.tgz"; - sha1 = "d545635be1e33c542649c69173e5de6acfae34dd"; + sha512 = "FxAv7HpHrXbh3aPo4o2qxHay2lkLY3x5Mw3KeE4KQE8ysVfziWeRZDwcjauvwBSGEC/nXUPzZy8zeh4HokqOnw=="; }; }; "camelcase-5.0.0" = { @@ -17453,7 +17597,7 @@ let version = "2.1.0"; src = fetchurl { url = "https://registry.npmjs.org/camelcase-keys/-/camelcase-keys-2.1.0.tgz"; - sha1 = "308beeaffdf28119051efa1d932213c91b8f92e7"; + sha512 = "bA/Z/DERHKqoEOrp+qeGKw1QlvEQkGZSc0XaY6VnTxZr+Kv1G5zFwttpjv8qxZ/sBPT4nthwZaAcsAZTJlSKXQ=="; }; }; "camelcase-keys-4.2.0" = { @@ -17462,7 +17606,7 @@ let version = "4.2.0"; src = fetchurl { url = "https://registry.npmjs.org/camelcase-keys/-/camelcase-keys-4.2.0.tgz"; - sha1 = "a2aa5fb1af688758259c32c141426d78923b9b77"; + sha512 = "Ej37YKYbFUI8QiYlvj9YHb6/Z60dZyPJW0Cs8sFilMbd2lP0bw3ylAq9yJkK4lcTA2dID5fG8LjmJYbO7kWb7Q=="; }; }; "camelcase-keys-6.2.2" = { @@ -17489,7 +17633,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/camelize/-/camelize-1.0.0.tgz"; - sha1 = "164a5483e630fa4321e5af07020e531831b2609b"; + sha512 = "W2lPwkBkMZwFlPCXhIlYgxu+7gC/NUlCtdK652DAJ1JdgV0sTrvuPFshNPrFa1TY2JOkLhgdeEBplB4ezEa+xg=="; }; }; "caniuse-api-3.0.0" = { @@ -17501,13 +17645,13 @@ let sha512 = "bsTwuIg/BZZK/vreVTYYbSWoe2F+71P7K5QGEX+pT250DZbfU1MQ5prOKpPR+LL6uWKK3KMwMCAS74QB3Um1uw=="; }; }; - "caniuse-lite-1.0.30001340" = { + "caniuse-lite-1.0.30001341" = { name = "caniuse-lite"; packageName = "caniuse-lite"; - version = "1.0.30001340"; + version = "1.0.30001341"; src = fetchurl { - url = "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001340.tgz"; - sha512 = "jUNz+a9blQTQVu4uFcn17uAD8IDizPzQkIKh3LCJfg9BkyIqExYYdyc/ZSlWUSKb8iYiXxKsxbv4zYSvkqjrxw=="; + url = "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30001341.tgz"; + sha512 = "2SodVrFFtvGENGCv0ChVJIDQ0KPaS1cg7/qtfMaICgeMolDdo/Z2OD32F0Aq9yl6F4YFwGPBS5AaPqNYiW4PoA=="; }; }; "canvas-2.9.1" = { @@ -17534,7 +17678,7 @@ let version = "0.2.5"; src = fetchurl { url = "https://registry.npmjs.org/capability/-/capability-0.2.5.tgz"; - sha1 = "51ad87353f1936ffd77f2f21c74633a4dea88801"; + sha512 = "rsJZYVCgXd08sPqwmaIqjAd5SUTfonV0z/gDJ8D6cN8wQphky1kkAYEqQ+hmDxTw7UihvBfjUVUSY+DBEe44jg=="; }; }; "capture-stack-trace-1.0.1" = { @@ -17552,7 +17696,7 @@ let version = "2.1.1"; src = fetchurl { url = "https://registry.npmjs.org/cardinal/-/cardinal-2.1.1.tgz"; - sha1 = "7cc1055d822d212954d07b085dea251cc7bc5505"; + sha512 = "JSr5eOgoEymtYHBjNWyjrMqet9Am2miJhlfKNdqLp6zoeAh0KN5dRAcxlecj5mAJrmQomgiOBj35xHLrFjqBpw=="; }; }; "case-1.6.3" = { @@ -17579,7 +17723,7 @@ let version = "0.11.0"; src = fetchurl { url = "https://registry.npmjs.org/caseless/-/caseless-0.11.0.tgz"; - sha1 = "715b96ea9841593cc33067923f5ec60ebda4f7d7"; + sha512 = "ODLXH644w9C2fMPAm7bMDQ3GRvipZWZfKc+8As6hIadRIelE0n0xZuN38NS6kiK3KPEVrpymmQD8bvncAHWQkQ=="; }; }; "caseless-0.12.0" = { @@ -17588,7 +17732,7 @@ let version = "0.12.0"; src = fetchurl { url = "https://registry.npmjs.org/caseless/-/caseless-0.12.0.tgz"; - sha1 = "1b681c21ff84033c826543090689420d187151dc"; + sha512 = "4tYFyifaFfGacoiObjJegolkwSU4xQNGbVgUiNYVUxbQ2x2lUsFvY4hVgVzGiIe6WLOPqycWXA40l+PWsxthUw=="; }; }; "castv2-0.1.10" = { @@ -17606,7 +17750,7 @@ let version = "1.2.0"; src = fetchurl { url = "https://registry.npmjs.org/castv2-client/-/castv2-client-1.2.0.tgz"; - sha1 = "a9193b1a5448b8cb9a0415bd021c8811ed7b0544"; + sha512 = "2diOsC0vSSxa3QEOgoGBy9fZRHzNXatHz464Kje2OpwQ7GM5vulyrD0gLFOQ1P4rgLAFsYiSGQl4gK402nEEuA=="; }; }; "catering-2.1.1" = { @@ -17672,13 +17816,13 @@ let sha512 = "5brCXdY69cJYff1njLMhbpj2lO5EAeeXbaR4l7m+vb/BIN/WpgiV9QatNgcxLqalcILnzGyDzlMB+TaCp//Rqw=="; }; }; - "cdk8s-plus-22-1.0.0-beta.220" = { + "cdk8s-plus-22-1.0.0-beta.222" = { name = "cdk8s-plus-22"; packageName = "cdk8s-plus-22"; - version = "1.0.0-beta.220"; + version = "1.0.0-beta.222"; src = fetchurl { - url = "https://registry.npmjs.org/cdk8s-plus-22/-/cdk8s-plus-22-1.0.0-beta.220.tgz"; - sha512 = "8oY3HE5LTmj1Q8z5cCfUT/OOl/rZu/zb6zkY7XiMsuBfUDoW2Tmr1N45VyvxwwB64tOlpDMHbETcm+sRz6BNRg=="; + url = "https://registry.npmjs.org/cdk8s-plus-22/-/cdk8s-plus-22-1.0.0-beta.222.tgz"; + sha512 = "SFqhacJUt9lnBdIgifvJZItB2sgDu4rjX991lMvT3EZl36ByBmMECNualocWj+e76bObriCxcmZ430XNxubuvQ=="; }; }; "cdktf-0.10.4" = { @@ -17696,7 +17840,7 @@ let version = "0.1.3"; src = fetchurl { url = "https://registry.npmjs.org/center-align/-/center-align-0.1.3.tgz"; - sha1 = "aa0d32629b6ee972200411cbd4461c907bc2b7ad"; + sha512 = "Baz3aNe2gd2LP2qk5U+sDk/m4oSuwSDcBfayTCTBoWpfIGO5XFxPmjILQII4NGiZjD6DoDI6kf7gKaxkf7s3VQ=="; }; }; "chacha20-universal-1.0.4" = { @@ -17732,7 +17876,7 @@ let version = "0.0.9"; src = fetchurl { url = "https://registry.npmjs.org/chainsaw/-/chainsaw-0.0.9.tgz"; - sha1 = "11a05102d1c4c785b6d0415d336d5a3a1612913e"; + sha512 = "nG8PYH+/4xB+8zkV4G844EtfvZ5tTiLFoX3dZ4nhF4t3OCKIb9UvaFyNmeZO2zOSmRWzBoTD+napN6hiL+EgcA=="; }; }; "chainsaw-0.1.0" = { @@ -17741,7 +17885,7 @@ let version = "0.1.0"; src = fetchurl { url = "https://registry.npmjs.org/chainsaw/-/chainsaw-0.1.0.tgz"; - sha1 = "5eab50b28afe58074d0d58291388828b5e5fbc98"; + sha512 = "75kWfWt6MEKNC8xYXIdRpDehRYY/tNSgwKaJq+dbbDcxORuVrrQ+SEHoWsniVn9XPYfP4gmdWIeDk/4YNp1rNQ=="; }; }; "chalk-0.4.0" = { @@ -17750,7 +17894,7 @@ let version = "0.4.0"; src = fetchurl { url = "https://registry.npmjs.org/chalk/-/chalk-0.4.0.tgz"; - sha1 = "5199a3ddcd0c1efe23bc08c1b027b06176e0c64f"; + sha512 = "sQfYDlfv2DGVtjdoQqxS0cEZDroyG8h6TamA6rvxwlrU5BaSLDx9xhatBYl2pxZ7gmpNaPFVwBtdGdu5rQ+tYQ=="; }; }; "chalk-0.5.1" = { @@ -17759,7 +17903,7 @@ let version = "0.5.1"; src = fetchurl { url = "https://registry.npmjs.org/chalk/-/chalk-0.5.1.tgz"; - sha1 = "663b3a648b68b55d04690d49167aa837858f2174"; + sha512 = "bIKA54hP8iZhyDT81TOsJiQvR1gW+ZYSXFaZUAvoD4wCHdbHY2actmpTE4x344ZlFqHbvoxKOaESULTZN2gstg=="; }; }; "chalk-1.0.0" = { @@ -17768,7 +17912,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/chalk/-/chalk-1.0.0.tgz"; - sha1 = "b3cf4ed0ff5397c99c75b8f679db2f52831f96dc"; + sha512 = "1TE3hpADga5iWinlcCpyhC7fTl9uQumLD8i2jJoJeVg7UbveY5jj7F6uCq8w0hQpSeLhaPn5QFe8e56toMVP1A=="; }; }; "chalk-1.1.3" = { @@ -17777,7 +17921,7 @@ let version = "1.1.3"; src = fetchurl { url = "https://registry.npmjs.org/chalk/-/chalk-1.1.3.tgz"; - sha1 = "a8115c55e4a702fe4d150abd3872822a7e09fc98"; + sha512 = "U3lRVLMSlsCfjqYPbLyVv11M9CPW4I728d6TCKMAOJueEeB9/8o+eSsMnxPJD+Q+K909sdESg7C+tIkoH6on1A=="; }; }; "chalk-2.4.1" = { @@ -17903,7 +18047,7 @@ let version = "2.2.0"; src = fetchurl { url = "https://registry.npmjs.org/character-parser/-/character-parser-2.2.0.tgz"; - sha1 = "c7ce28f36d4bcd9744e5ffc2c5fcde1c73261fc0"; + sha512 = "+UqJQjFEFaTAs3bNsF2j2kEN1baG/zghZbdqoYEDxGZtJo9LBzl1A+m0D4n3qKx8N2FNv8/Xp6yV9mQmBuptaw=="; }; }; "character-reference-invalid-1.1.4" = { @@ -17930,7 +18074,7 @@ let version = "0.4.2"; src = fetchurl { url = "https://registry.npmjs.org/chardet/-/chardet-0.4.2.tgz"; - sha1 = "b5473b33dc97c424e5d98dc87d55d4d8a29c8bf2"; + sha512 = "j/Toj7f1z98Hh2cYo2BVr85EpIRWqUi7rtRSGxh/cqUjqrnJe9l9UE7IUGd2vQ2p+kSHLkSzObQPZPLUC6TQwg=="; }; }; "chardet-0.7.0" = { @@ -17957,7 +18101,7 @@ let version = "0.0.2"; src = fetchurl { url = "https://registry.npmjs.org/charenc/-/charenc-0.0.2.tgz"; - sha1 = "c0a1d2f3a7092e03774bfa83f14c0fc5790a8667"; + sha512 = "yrLQ/yVUFXkzg7EDQsPieE/53+0RlaWTs+wBrvW36cyilJ2SaDWfl4Yj7MtLTXleV9uEKefbAGUPv2/iWSooRA=="; }; }; "charm-0.1.2" = { @@ -17966,7 +18110,7 @@ let version = "0.1.2"; src = fetchurl { url = "https://registry.npmjs.org/charm/-/charm-0.1.2.tgz"; - sha1 = "06c21eed1a1b06aeb67553cdc53e23274bac2296"; + sha512 = "syedaZ9cPe7r3hoQA9twWYKu5AIyCswN5+szkmPBe9ccdLrj4bYaCnLVPTLd2kgVRc7+zoX4tyPgRnFKCj5YjQ=="; }; }; "charset-1.0.1" = { @@ -18002,7 +18146,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/check-ends-with-period/-/check-ends-with-period-1.0.1.tgz"; - sha1 = "d7d29d614cbc3ed15ab54190f4fda4deaa3141d8"; + sha512 = "vhGWpphk52Q1CiU2YHpWhOOKyI1FMCVPfPO7X6M6fN60JbnzZCwnf9cgR+T4LDSZGCDd1mqzgCdIcffEFBrUFQ=="; }; }; "check-error-1.0.2" = { @@ -18011,7 +18155,7 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/check-error/-/check-error-1.0.2.tgz"; - sha1 = "574d312edd88bb5dd8912e9286dd6c0aed4aac82"; + sha512 = "BrgHpW9NURQgzoNyjfq0Wu6VFO6D7IZEmJNdtgNqpzGG8RuNFHt2jQxWlAs4HMe119chBnv+34syEZtc6IhLtA=="; }; }; "check-types-8.0.3" = { @@ -18029,7 +18173,7 @@ let version = "0.17.0"; src = fetchurl { url = "https://registry.npmjs.org/cheerio/-/cheerio-0.17.0.tgz"; - sha1 = "fa5ae42cc60121133d296d0b46d983215f7268ea"; + sha512 = "pakQLw14btS8T4+Q3dgFbe7x447hjsQeEhMJ2kHg8YrOLSmKS0xGl9REnz/eic7dsxS0S9kMRbZcsqrlMAS0dQ=="; }; }; "cheerio-0.19.0" = { @@ -18038,7 +18182,7 @@ let version = "0.19.0"; src = fetchurl { url = "https://registry.npmjs.org/cheerio/-/cheerio-0.19.0.tgz"; - sha1 = "772e7015f2ee29965096d71ea4175b75ab354925"; + sha512 = "Fwcm3zkR37STnPC8FepSHeSYJM5Rd596TZOcfDUdojR4Q735aK1Xn+M+ISagNneuCwMjK28w4kX+ETILGNT/UQ=="; }; }; "cheerio-0.20.0" = { @@ -18047,7 +18191,7 @@ let version = "0.20.0"; src = fetchurl { url = "https://registry.npmjs.org/cheerio/-/cheerio-0.20.0.tgz"; - sha1 = "5c710f2bab95653272842ba01c6ea61b3545ec35"; + sha512 = "e5jCTzJc28MWkrLLjB1mu3ks7rDQJLC5y/JMdQkOAEX/dmJk62rC6Xae1yvOO4xyCxLpzcth3jIZ7nypmjQ/0w=="; }; }; "cheerio-0.22.0" = { @@ -18056,7 +18200,7 @@ let version = "0.22.0"; src = fetchurl { url = "https://registry.npmjs.org/cheerio/-/cheerio-0.22.0.tgz"; - sha1 = "a9baa860a3f9b595a6b81b1a86873121ed3a269e"; + sha512 = "8/MzidM6G/TgRelkzDG13y3Y9LxBjCb+8yOEZ9+wwq5gVF2w2pV0wmHvjfT0RvuxGyR7UEuK36r+yYMbT4uKgA=="; }; }; "cheerio-1.0.0-rc.10" = { @@ -18110,7 +18254,7 @@ let version = "2.2.1"; src = fetchurl { url = "https://registry.npmjs.org/child-process-promise/-/child-process-promise-2.2.1.tgz"; - sha1 = "4730a11ef610fad450b8f223c79d31d7bdad8074"; + sha512 = "Fi4aNdqBsr0mv+jgWxcZ/7rAIC2mgihrptyVI4foh/rrjY/3BNjfP9+oaiFx/fzim+1ZyCNBae0DlyfQhSugog=="; }; }; "chloride-2.4.1" = { @@ -18137,7 +18281,7 @@ let version = "1.7.0"; src = fetchurl { url = "https://registry.npmjs.org/chokidar/-/chokidar-1.7.0.tgz"; - sha1 = "798e689778151c8076b4b360e5edd28cda2bb468"; + sha512 = "mk8fAWcRUOxY7btlLtitj3A45jOwSAxH4tOFOoEGbVsl6cL6pPMWUy7dwZ/canfj3QEdP6FHSnf/l1c6/WkzVg=="; }; }; "chokidar-2.1.8" = { @@ -18263,7 +18407,7 @@ let version = "0.2.3"; src = fetchurl { url = "https://registry.npmjs.org/chromecast-player/-/chromecast-player-0.2.3.tgz"; - sha1 = "fe9ce69911c88096d681e4242c1902ad30787216"; + sha512 = "UgTIJ5EGPaXE5tGoEx0wvnZouxpPgRt1xEwpYrzqJpVoKrfD3fmQIydnQyxlrudLpj+Mpt6Jzj10gEr2G6X6mw=="; }; }; "chromecast-scanner-0.5.0" = { @@ -18272,7 +18416,7 @@ let version = "0.5.0"; src = fetchurl { url = "https://registry.npmjs.org/chromecast-scanner/-/chromecast-scanner-0.5.0.tgz"; - sha1 = "01296a3e5d130cce34974eb509cbbc7d6f78dd3d"; + sha512 = "xVQA3LjIT9uXIXcZ61PskEVsPk1qylzIk9AtJG8aUqvqAuLIY5nMHSt89Bkhcg9k+aMAnCj1xwCaSCmypsT9Pg=="; }; }; "chromecasts-1.10.2" = { @@ -18290,7 +18434,7 @@ let version = "0.2.0"; src = fetchurl { url = "https://registry.npmjs.org/chromium-pickle-js/-/chromium-pickle-js-0.2.0.tgz"; - sha1 = "04a106672c18b085ab774d983dfa3ea138f22205"; + sha512 = "1R5Fho+jBq0DDydt+/vHWj5KJNJCKdARKOCwZUen84I5BreWoLqRLANH1U87eJy1tiASPtMnGqJJq0ZsLoRPOw=="; }; }; "chunk-store-stream-4.3.0" = { @@ -18335,7 +18479,7 @@ let version = "8.2.1"; src = fetchurl { url = "https://registry.npmjs.org/cint/-/cint-8.2.1.tgz"; - sha1 = "70386b1b48e2773d0d63166a55aff94ef4456a12"; + sha512 = "gyWqJHXgDFPNx7PEyFJotutav+al92TTC3dWlMFyTETlOyKBQMZb7Cetqmj3GlrnSILHwSJRwf4mIGzc7C5lXw=="; }; }; "cipher-base-1.0.4" = { @@ -18380,7 +18524,7 @@ let version = "0.3.3"; src = fetchurl { url = "https://registry.npmjs.org/cjson/-/cjson-0.3.3.tgz"; - sha1 = "a92d9c786e5bf9b930806329ee05d5d3261b4afa"; + sha512 = "yKNcXi/Mvi5kb1uK0sahubYiyfUO2EUgOp4NcY9+8NX5Xmc+4yeNogZuLFkpLBBj7/QI9MjRUIuXrV9XOw5kVg=="; }; }; "clap-1.2.3" = { @@ -18407,7 +18551,7 @@ let version = "0.11.0"; src = fetchurl { url = "https://registry.npmjs.org/clarinet/-/clarinet-0.11.0.tgz"; - sha1 = "6cc912b93138dc867fc273cd34ea90e83e054719"; + sha512 = "6hgoCgDgdyEtrXsk1tMomUl+S6wnslv2F1muNTOuhQemOhauR+Q0FtBdrj9k+qyIDLm0TVW0QMZ10aeWwRDgIA=="; }; }; "class-utils-0.3.6" = { @@ -18443,7 +18587,7 @@ let version = "3.4.28"; src = fetchurl { url = "https://registry.npmjs.org/clean-css/-/clean-css-3.4.28.tgz"; - sha1 = "bf1945e82fc808f55695e6ddeaec01400efd03ff"; + sha512 = "aTWyttSdI2mYi07kWqHi24NUU9YlELFKGOAgFzZjDN1064DMAOy2FBuoyGmkKRlXkbpXd0EVHmiVkbKhKoirTw=="; }; }; "clean-css-4.2.4" = { @@ -18524,7 +18668,7 @@ let version = "1.0.1"; src = fetchurl { url = "https://registry.npmjs.org/cli/-/cli-1.0.1.tgz"; - sha1 = "22817534f24bfa4950c34d532d48ecbc621b8c14"; + sha512 = "41U72MB56TfUMGndAKK8vJ78eooOD4Z5NOL4xEfjc0c23s+6EYKXlXsmACBVclLP1yOfWCgEganVzddVrSNoTg=="; }; }; "cli-boxes-1.0.0" = { @@ -18533,7 +18677,7 @@ let version = "1.0.0"; src = fetchurl { url = "https://registry.npmjs.org/cli-boxes/-/cli-boxes-1.0.0.tgz"; - sha1 = "4fa917c3e59c94a004cd61f8ee509da651687143"; + sha512 = "3Fo5wu8Ytle8q9iCzS4D2MWVL2X7JVWRiS1BnXbTFDhS9c/REkM9vd1AmabsoZoY5/dGi5TT9iKL8Kb6DeBRQg=="; }; }; "cli-boxes-2.2.1" = { @@ -18560,7 +18704,7 @@ let version = "1.0.2"; src = fetchurl { url = "https://registry.npmjs.org/cli-cursor/-/cli-cursor-1.0.2.tgz"; - sha1 = "64da3f7d56a54412e59794bd62dc35295e8f2987"; + sha512 = "25tABq090YNKkF6JH7lcwO0zFJTRke4Jcq9iX2nr/Sz0Cjjv4gckmwlW6Ty/aoyFd6z3ysR2hMGC2GFugmBo6A=="; }; }; "cli-cursor-2.1.0" = { @@ -18569,7 +18713,7 @@ let version = "2.1.0"; src = fetchurl { url = "https://registry.npmjs.org/cli-cursor/-/cli-cursor-2.1.0.tgz"; - sha1 = "b35dac376479facc3e94747d41d0d0f5238ffcb5"; + sha512 = "8lgKz8LmCRYZZQDpRyT2m5rKJ08TnU4tR9FFFW2rxpxR1FzWi4PQ/NfyODchAatHaUgnSPVcx/R5w6NuTBzFiw=="; }; }; "cli-cursor-3.1.0" = { @@ -18605,16 +18749,16 @@ let version = "0.2.0"; src = fetchurl { url = "https://registry.npmjs.org/cli-list/-/cli-list-0.2.0.tgz"; - sha1 = "7e673ee0dd39a611a486476e53f3c6b3941cb582"; + sha512 = "+3MlQHdTSiT7e3Uxco/FL1MjuIYLmvDEhCAekRLCrGimHGfAR1LbJwCrKGceVp95a4oDFVB9CtLWiw2MT8NDXw=="; }; }; - "cli-progress-3.11.0" = { + "cli-progress-3.11.1" = { name = "cli-progress"; packageName = "cli-progress"; - version = "3.11.0"; + version = "3.11.1"; src = fetchurl { - url = "https://registry.npmjs.org/cli-progress/-/cli-progress-3.11.0.tgz"; - sha512 = "ug+V4/Qy3+0jX9XkWPV/AwHD98RxKXqDpL37vJBOxQhD90qQ3rDqDKoFpef9se91iTUuOXKlyg2HUyHBo5lHsQ=="; + url = "https://registry.npmjs.org/cli-progress/-/cli-progress-3.11.1.tgz"; + sha512 = "TTMA2LHrYaZeNMcgZGO10oYqj9hvd03pltNtVbu4ddeyDTHlYV7gWxsFiuvaQlgwMBFCv1TukcjiODWFlb16tQ=="; }; }; "cli-progress-footer-2.3.1" = { @@ -18680,15 +18824,6 @@ let sha512 = "7Qg2Jrep1S/+Q3EceiZtQcDPWxhAvBw+ERf1162v4sikJrvojMHFqXt8QIVha8UlH9rgU0BeWPytZ9/TzYqlUw=="; }; }; - "cli-table3-0.6.1" = { - name = "cli-table3"; - packageName = "cli-table3"; - version = "0.6.1"; - src = fetchurl { - url = "https://registry.npmjs.org/cli-table3/-/cli-table3-0.6.1.tgz"; - sha512 = "w0q/enDHhPLq44ovMGdQeeDLvwxwavsJX7oQGYt/LrBlYsyaxyDnp6z3QzFut/6kLLKnlcUVJLrpB7KBfgG/RA=="; - }; - }; "cli-table3-0.6.2" = { name = "cli-table3"; packageName = "cli-table3"; @@ -18713,7 +18848,7 @@ let version = "0.2.1"; src = fetchurl { url = "https://registry.npmjs.org/cli-truncate/-/cli-truncate-0.2.1.tgz"; - sha1 = "9f15cfbb0705005369216c626ac7d05ab90dd574"; + sha512 = "f4r4yJnbT++qUPI9NR4XLDLq41gQ+uqnPItWG0F5ZkehuNiTTa3EY0S4AqTSUOeJ7/zU41oWPQSNkW5BqPL9bg=="; }; }; "cli-truncate-1.1.0" = { @@ -18767,7 +18902,7 @@ let version = "1.1.1"; src = fetchurl { url = "https://registry.npmjs.org/cli-width/-/cli-width-1.1.1.tgz"; - sha1 = "a4d293ef67ebb7b88d4a4d42c0ccf00c4d1e366d"; + sha512 = "eMU2akIeEIkCxGXUNmDnJq1KzOIiPnJ+rKqRe6hcxE3vIOPvpMrBYOn/Bl7zNlYJj/zQxXquAnozHUCf9Whnsg=="; }; }; "cli-width-2.2.1" = { @@ -18794,7 +18929,7 @@ let version = "1.1.1"; src = fetchurl { url = "https://registry.npmjs.org/cliclopts/-/cliclopts-1.1.1.tgz"; - sha1 = "69431c7cb5af723774b0d3911b4c37512431910f"; + sha512 = "dJk8y+TJmOy9Kqha0aWN0rwM5E5EQCVjhl2GTz1CrkqzxkQZ26/hyrNmy7lwePdZc4iNcdHL1tTdcIBeNQhmww=="; }; }; "cliff-0.1.10" = { @@ -19256,13 +19391,13 @@ let sha512 = "3WQV/Fpa77nvzjUlc+0u53uIroJyyMB2Qwl++aXpAiDIsrsiAQq4uCURwdRBRX+eLkOTIAmT0L4qna3T7+2pUg=="; }; }; - "codemaker-1.58.0" = { + "codemaker-1.59.0" = { name = "codemaker"; packageName = "codemaker"; - version = "1.58.0"; + version = "1.59.0"; src = fetchurl { - url = "https://registry.npmjs.org/codemaker/-/codemaker-1.58.0.tgz"; - sha512 = "hV9snVkPiXjHKsYpZD7tTb28LHeXCkvZxiwSph9iWTJJP7+fP9s2inDiHdMHF+Nq+o+JLXKWkE2DP5iNOHAtuA=="; + url = "https://registry.npmjs.org/codemaker/-/codemaker-1.59.0.tgz"; + sha512 = "pVie4lGQgjejvGGcZnhO//9naGRNeHRq96kFrlfQQGABiToLcCy2/UQtAi2qw7FYrPRKqHn2DBR8PcP4avwEMw=="; }; }; "codepage-1.4.0" = { @@ -20318,22 +20453,22 @@ let sha1 = "c20b96d8c617748aaf1c16021760cd27fcb8cb75"; }; }; - "constructs-10.1.7" = { + "constructs-10.1.10" = { name = "constructs"; packageName = "constructs"; - version = "10.1.7"; + version = "10.1.10"; src = fetchurl { - url = "https://registry.npmjs.org/constructs/-/constructs-10.1.7.tgz"; - sha512 = "U4zMM7Iqa81hzLSfof9IW9R7kUWSMdhzV2JS8lXGISRFXljZrd4qwzYxhSO/VMB+CS24Tt0/YYLyNxET+6/3Mg=="; + url = "https://registry.npmjs.org/constructs/-/constructs-10.1.10.tgz"; + sha512 = "r6d3QYygh+nveBJK9Iu70XYFVNzUOKIeqQP4uYwyOsQcTlmGydpGdgePPSxmBb80Zv2ZiFoKI87Jt2DmLGoXaA=="; }; }; - "constructs-3.4.7" = { + "constructs-3.4.10" = { name = "constructs"; packageName = "constructs"; - version = "3.4.7"; + version = "3.4.10"; src = fetchurl { - url = "https://registry.npmjs.org/constructs/-/constructs-3.4.7.tgz"; - sha512 = "TnYJY+u7+TP/p5/sZOzBrPGNA/Aa3MDlqpS/+98gvWWndRwnLy0VFPX3HDS/gvVMa0WcE3U59heFXnxtQvSbqA=="; + url = "https://registry.npmjs.org/constructs/-/constructs-3.4.10.tgz"; + sha512 = "SAl+0oq6GxrgF+YVn9NV5ZbVK5vDyFCL4bCEPIhx61jYIH/npP/MFTBm0RO8Agf2it8iZTE0QtzOoOzuxk8tRA=="; }; }; "consume-http-header-1.0.0" = { @@ -21084,13 +21219,13 @@ let sha512 = "H/2gurFWVi7xXvCyvsWRLCMekl4tITJcX0QEsDMpzxtuxDyM59xLatYNg4s/k9AA/HdtCYfj2su8mgA0GSDLDA=="; }; }; - "cosmiconfig-typescript-loader-1.0.9" = { + "cosmiconfig-typescript-loader-2.0.0" = { name = "cosmiconfig-typescript-loader"; packageName = "cosmiconfig-typescript-loader"; - version = "1.0.9"; + version = "2.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/cosmiconfig-typescript-loader/-/cosmiconfig-typescript-loader-1.0.9.tgz"; - sha512 = "tRuMRhxN4m1Y8hP9SNYfz7jRwt8lZdWxdjg/ohg5esKmsndJIn4yT96oJVcf5x0eA11taXl+sIp+ielu529k6g=="; + url = "https://registry.npmjs.org/cosmiconfig-typescript-loader/-/cosmiconfig-typescript-loader-2.0.0.tgz"; + sha512 = "2NlGul/E3vTQEANqPziqkA01vfiuUU8vT0jZAuUIjEW8u3eCcnCQWLggapCjhbF76s7KQF0fM0kXSKmzaDaG1g=="; }; }; "count-trailing-zeros-1.0.1" = { @@ -21309,6 +21444,15 @@ let sha512 = "1yHhtcfAd1r4nwQgknowuUNfIT9E8dOMMspC36g45dN+iD1blloi7xp8X/xAIDnjHWyt1uQ8PHk2fkNaym7soQ=="; }; }; + "cross-env-7.0.3" = { + name = "cross-env"; + packageName = "cross-env"; + version = "7.0.3"; + src = fetchurl { + url = "https://registry.npmjs.org/cross-env/-/cross-env-7.0.3.tgz"; + sha512 = "+/HKd6EgcQCJGh2PSjZuUitQBQynKor4wrFbRg4DtAgS1aWO+gU52xpH7M9ScGgXSYmAVS9bIJ8EzuaGw0oNAw=="; + }; + }; "cross-fetch-3.0.6" = { name = "cross-fetch"; packageName = "cross-fetch"; @@ -21471,49 +21615,49 @@ let sha512 = "v1plID3y9r/lPhviJ1wrXpLeyUIGAZ2SHNYTEapm7/8A9nLPoyvVp3RK/EPFqn5kEznyWgYZNsRtYYIWbuG8KA=="; }; }; - "cspell-gitignore-5.20.0" = { + "cspell-gitignore-5.21.0" = { name = "cspell-gitignore"; packageName = "cspell-gitignore"; - version = "5.20.0"; + version = "5.21.0"; src = fetchurl { - url = "https://registry.npmjs.org/cspell-gitignore/-/cspell-gitignore-5.20.0.tgz"; - sha512 = "oWzoHcaidX6jFON6vwiH3cA1HqkGmawD1DWt+fPWKrea9/SuTcvFxm+RbqO4DjwXEAMIczyPOWo+SCM0VbcCrA=="; + url = "https://registry.npmjs.org/cspell-gitignore/-/cspell-gitignore-5.21.0.tgz"; + sha512 = "r8Brb46X3b3z0P0+gEZiMRfAcJjzdyU+S0zszOgb/Cz1afawEctH+XNVkkoMIfezAMo1LMD70z709cN2gn/Nog=="; }; }; - "cspell-glob-5.20.0" = { + "cspell-glob-5.21.0" = { name = "cspell-glob"; packageName = "cspell-glob"; - version = "5.20.0"; + version = "5.21.0"; src = fetchurl { - url = "https://registry.npmjs.org/cspell-glob/-/cspell-glob-5.20.0.tgz"; - sha512 = "eyo8NYH4GapHxfilMarwvf1HIyGWT3gWuFlYkmQjYVx3KjzmfR1Y1x9S068wmwjp9kKCu9T6Vj71EGG+9R59Lw=="; + url = "https://registry.npmjs.org/cspell-glob/-/cspell-glob-5.21.0.tgz"; + sha512 = "5eivYmRhyRdRhsqmYqL71T36fLY0WJ5BkIzOlIgKLkZ+g9FHlmVn89u9og60QZduUtckBz9Xty62yhEyyAVr/A=="; }; }; - "cspell-io-5.20.0" = { + "cspell-io-5.21.0" = { name = "cspell-io"; packageName = "cspell-io"; - version = "5.20.0"; + version = "5.21.0"; src = fetchurl { - url = "https://registry.npmjs.org/cspell-io/-/cspell-io-5.20.0.tgz"; - sha512 = "wgqqpVIhtMh+/+3YfHt8cDfrD7OLF+xQlStlURj8AJwEJ0xu16zyI9S5zcig+83+0QyzuMdxfZiMgbdQxWEvOg=="; + url = "https://registry.npmjs.org/cspell-io/-/cspell-io-5.21.0.tgz"; + sha512 = "zt/dZk5Yppg1+JQr7un4OrVSF+ODdcVRMYrqnZBY/QCBUkSFIYZ5X8cnKMZvR9ZkGRON0nid+dslDUCPaRNMcA=="; }; }; - "cspell-lib-5.20.0" = { + "cspell-lib-5.21.0" = { name = "cspell-lib"; packageName = "cspell-lib"; - version = "5.20.0"; + version = "5.21.0"; src = fetchurl { - url = "https://registry.npmjs.org/cspell-lib/-/cspell-lib-5.20.0.tgz"; - sha512 = "Fc7+3ExF2pNS8BsQTXSMkhR6ITbpyiMQf+y4ZH/aBml09+O6lrbj4j2tJx/oR4XvDEA8uQkV/5lMGdU+otC1KQ=="; + url = "https://registry.npmjs.org/cspell-lib/-/cspell-lib-5.21.0.tgz"; + sha512 = "mSeLF2/+2exvz979TJMYUA2Wh1Bw6TX1RVAOw1MT1nltpS3x0d7AE/hNufivHUXOFWrwf2mNVJZi4zXQ14GpkA=="; }; }; - "cspell-trie-lib-5.20.0" = { + "cspell-trie-lib-5.21.0" = { name = "cspell-trie-lib"; packageName = "cspell-trie-lib"; - version = "5.20.0"; + version = "5.21.0"; src = fetchurl { - url = "https://registry.npmjs.org/cspell-trie-lib/-/cspell-trie-lib-5.20.0.tgz"; - sha512 = "ET95dJh+OJ04PdLI9dKqAa+dDu47tXcUxCR6uKiZ+qZ18v1Zl986s8q89m9c+xpo7Leqh0rF6Zsw3M9Cjy6Jhw=="; + url = "https://registry.npmjs.org/cspell-trie-lib/-/cspell-trie-lib-5.21.0.tgz"; + sha512 = "VjxoBKD+wXStn+PtTATACeQCwDIXQT2S6Thrlx9gNvIr90y08iaE9lfvs5BHn35kRR8FPFw1vVLQRullKMpT6g=="; }; }; "csrf-3.1.0" = { @@ -21903,13 +22047,13 @@ let sha512 = "AZL67abkUzIuvcHqk7c09cezpGNcxUxU4Ioi/05xHk4DQeTkWmGYftIE6ctU6AEt+Gn4n1lDStOtj7FKycP71A=="; }; }; - "csstype-3.0.11" = { + "csstype-3.1.0" = { name = "csstype"; packageName = "csstype"; - version = "3.0.11"; + version = "3.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/csstype/-/csstype-3.0.11.tgz"; - sha512 = "sa6P2wJ+CAbgyy4KFssIb/JNMLxFvKF1pCYCSXS8ZMuqZnMsrxqI2E5sPyoTpxoPU/gVZMzr2zjOfg8GIZOMsw=="; + url = "https://registry.npmjs.org/csstype/-/csstype-3.1.0.tgz"; + sha512 = "uX1KG+x9h5hIJsaKR9xHUeUraxf8IODOwq9JLNPq6BwB04a/xgpq3rcx47l5BZu5zBPlgD342tdke3Hom/nJRA=="; }; }; "csurf-1.11.0" = { @@ -23073,13 +23217,13 @@ let sha512 = "eyTcpKOcamdhWJXj56DpQMo1ylSQpcGtGKXcU0Tb97+K56/CF5amAqqqNj0+KvA0iw2ynxtHWFsPDSClCxe48w=="; }; }; - "date-format-4.0.9" = { + "date-format-4.0.10" = { name = "date-format"; packageName = "date-format"; - version = "4.0.9"; + version = "4.0.10"; src = fetchurl { - url = "https://registry.npmjs.org/date-format/-/date-format-4.0.9.tgz"; - sha512 = "+8J+BOUpSrlKLQLeF8xJJVTxS8QfRSuJgwxSVvslzgO3E6khbI0F5mMEPf5mTYhCCm4h99knYP6H3W9n3BQFrg=="; + url = "https://registry.npmjs.org/date-format/-/date-format-4.0.10.tgz"; + sha512 = "RuMIHocrVjF84bUSTcd1uokIsLsOsk1Awb7TexNOI3f48ukCu39mjslWquDTA08VaDMF2umr3MB9ow5EyJTWyA=="; }; }; "date-now-0.1.4" = { @@ -23946,6 +24090,15 @@ let sha512 = "1shh9DQ23L16oXSZKB2JxpL7iMy2E0S9d517ptA1P8iw0alkPtQcrKH7ru31rYtKwF499HkTu+DRzq3TCKDFRQ=="; }; }; + "del-6.1.0" = { + name = "del"; + packageName = "del"; + version = "6.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/del/-/del-6.1.0.tgz"; + sha512 = "OpcRktOt7G7HBfyxP0srBH4Djg4824EQORX8E1qvIhIzthNNArxxhrB/Mm7dRMiLi1nvFyUpDhzD2cTtbBhV8A=="; + }; + }; "delaunator-5.0.0" = { name = "delaunator"; packageName = "delaunator"; @@ -24297,6 +24450,15 @@ let sha512 = "0cuGS8+jhR67Fy7qG3i3Pc7Aw494sb9yG9QgpG97SFVWwolgYjlhJg7n+UaHxOQT30d1TYu/EYe9k01ivLErIg=="; }; }; + "devtools-protocol-0.0.982423" = { + name = "devtools-protocol"; + packageName = "devtools-protocol"; + version = "0.0.982423"; + src = fetchurl { + url = "https://registry.npmjs.org/devtools-protocol/-/devtools-protocol-0.0.982423.tgz"; + sha512 = "FnVW2nDbjGNw1uD/JRC+9U5768W7e1TfUwqbDTcSsAu1jXFjITSX8w3rkW5FEpHRMPPGpvNSmO1pOpqByiWscA=="; + }; + }; "dezalgo-1.0.4" = { name = "dezalgo"; packageName = "dezalgo"; @@ -24909,6 +25071,15 @@ let sha512 = "JiK04h0Ht5u/80fdLMCEmV4zkNh2BcoMFBmZ/91WtYZ8qVXSKjiw7fXMgFPnHcSZgOo3XdinHvmnDUeMf5R4wA=="; }; }; + "domhandler-3.0.0" = { + name = "domhandler"; + packageName = "domhandler"; + version = "3.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/domhandler/-/domhandler-3.0.0.tgz"; + sha512 = "eKLdI5v9m67kbXQbJSNn1zjh0SDzvzWVWtX+qEI3eMjZw8daH9k8rlj1FZY9memPwjiskQFbe7vHVVJIAqoEhw=="; + }; + }; "domhandler-3.3.0" = { name = "domhandler"; packageName = "domhandler"; @@ -24954,13 +25125,13 @@ let sha512 = "OFP2u/3T1R5CEgWCEONuJ1a5+MFKnOYpkywpUSxv/dj1LeBT1erK+JwM7zK0ROy2BRhqVCf0LRw/kHqKuMkVGg=="; }; }; - "dompurify-2.3.7" = { + "dompurify-2.3.8" = { name = "dompurify"; packageName = "dompurify"; - version = "2.3.7"; + version = "2.3.8"; src = fetchurl { - url = "https://registry.npmjs.org/dompurify/-/dompurify-2.3.7.tgz"; - sha512 = "fsVZLywBd3awZIG3qU4JEdw7DCb0uUCajTfWRrLhsgKjTBd5CIIluPoAkNfco05GuNYQGj4/+bQIhlq96eT9eQ=="; + url = "https://registry.npmjs.org/dompurify/-/dompurify-2.3.8.tgz"; + sha512 = "eVhaWoVibIzqdGYjwsBWodIQIaXFSB+cKDf4cfxLMsK0xiud6SE+/WCVx/Xw/UwQsa4cS3T2eITcdtmTg2UKcw=="; }; }; "domutils-1.4.3" = { @@ -25594,15 +25765,6 @@ let sha512 = "iLhC6ULemrljPZb+QutR5TQGB+pdW6KGD5RSegS+8sorOZT+rdQFbsQFJgvN3eRqNALqJer4oQ16YvJHlU8hzQ=="; }; }; - "emitter-component-1.1.1" = { - name = "emitter-component"; - packageName = "emitter-component"; - version = "1.1.1"; - src = fetchurl { - url = "https://registry.npmjs.org/emitter-component/-/emitter-component-1.1.1.tgz"; - sha1 = "065e2dbed6959bf470679edabeaf7981d1003ab6"; - }; - }; "emitter-http://github.com/component/emitter/archive/1.0.1.tar.gz" = { name = "emitter"; packageName = "emitter"; @@ -26261,13 +26423,13 @@ let sha512 = "rcOwbfvP1WTViVoUjcfZicVzjhjTuhSMntHh6mW3IrEiyE6mJyXvsToJUJGlGlw/2xU9P5whlWNGlIDVeCiT4A=="; }; }; - "es-abstract-1.20.0" = { + "es-abstract-1.20.1" = { name = "es-abstract"; packageName = "es-abstract"; - version = "1.20.0"; + version = "1.20.1"; src = fetchurl { - url = "https://registry.npmjs.org/es-abstract/-/es-abstract-1.20.0.tgz"; - sha512 = "URbD8tgRthKD3YcC39vbvSDrX23upXnPcnGAjQfgxXF5ID75YcENawc9ZX/9iTP9ptUyfCLIxTTuMYoRfiOVKA=="; + url = "https://registry.npmjs.org/es-abstract/-/es-abstract-1.20.1.tgz"; + sha512 = "WEm2oBhfoI2sImeM4OF2zE2V3BYdSF+KnSi9Sidz51fQHd7+JuF8Xgcj9/0o+OWeIeIS/MiuNnlruQrJf16GQA=="; }; }; "es-get-iterator-1.1.2" = { @@ -27638,13 +27800,13 @@ let sha512 = "HKPcwXuRztEjhQRHxwhLXyAblkOsSi3n7aaBV6qgrOOi0WL/E3di8E2fowlHiiQW/i9vJDemMcvq0ZTCYW+bFg=="; }; }; - "expo-pwa-0.0.118" = { + "expo-pwa-0.0.119" = { name = "expo-pwa"; packageName = "expo-pwa"; - version = "0.0.118"; + version = "0.0.119"; src = fetchurl { - url = "https://registry.npmjs.org/expo-pwa/-/expo-pwa-0.0.118.tgz"; - sha512 = "zm8QDDty+AzVkYHfzox/jk/97XdYlxFBOx3Lw6zprjlnZcZgOR+VR/uuek+kgEWRo7Oxhr+4al3rNgEurIsAzw=="; + url = "https://registry.npmjs.org/expo-pwa/-/expo-pwa-0.0.119.tgz"; + sha512 = "TGoZ+IFp5+wPlHESuBXc8VsLNnk41FDe1e+nENcM3Exty4uD/galsAG3RLrt2RSxBw3bDLtSNJOD0ZhmYLg6QQ=="; }; }; "exponential-backoff-3.1.0" = { @@ -28394,6 +28556,15 @@ let sha512 = "4pXwmBplsCPv8FOY1WRakF970TjNGnGnfbOnLqjlYvMiF1SR3yOHyxMR/YCXpPTOspNF5gwudqktIP4VsWkvBg=="; }; }; + "fast-xml-parser-3.21.1" = { + name = "fast-xml-parser"; + packageName = "fast-xml-parser"; + version = "3.21.1"; + src = fetchurl { + url = "https://registry.npmjs.org/fast-xml-parser/-/fast-xml-parser-3.21.1.tgz"; + sha512 = "FTFVjYoBOZTJekiUsawGsSYV9QL0A+zDYCRj7y34IO6Jg+2IMYEtQa+bbictpdpV8dHxXywqU7C0gRDEOFtBFg=="; + }; + }; "fastest-levenshtein-1.0.12" = { name = "fastest-levenshtein"; packageName = "fastest-levenshtein"; @@ -29636,13 +29807,13 @@ let sha512 = "DUxuQaKoqfNne8iikd14SAkh5uw4+8vNifp6gmA73yYNS6ywLIWSLD/n/mBzHQRpW3J7rbATEakmiA8JvkTyZw=="; }; }; - 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"marked-4.0.15" = { + "marked-4.0.16" = { name = "marked"; packageName = "marked"; - version = "4.0.15"; + version = "4.0.16"; src = fetchurl { - url = "https://registry.npmjs.org/marked/-/marked-4.0.15.tgz"; - sha512 = "esX5lPdTfG4p8LDkv+obbRCyOKzB+820ZZyMOXJZygZBHrH9b3xXR64X4kT3sPe9Nx8qQXbmcz6kFSMt4Nfk6Q=="; + url = "https://registry.npmjs.org/marked/-/marked-4.0.16.tgz"; + sha512 = "wahonIQ5Jnyatt2fn8KqF/nIqZM8mh3oRu2+l5EANGMhu6RFjiSG52QNE2eWzFMI94HqYSgN184NurgNG6CztA=="; }; }; "marked-terminal-3.3.0" = { @@ -43391,13 +43490,13 @@ let sha512 = "HSSOLSVRrsDdui9I6i96dDtG+oAez/4EB2g4cjSrNhgNQ3M+L57/+22NuPdORSoxvOHjIg/xeOE+C0wwF91D2g=="; }; }; - "memfs-3.4.1" = { + "memfs-3.4.3" = { name = "memfs"; packageName = "memfs"; - version = "3.4.1"; + version = "3.4.3"; src = fetchurl { - url = "https://registry.npmjs.org/memfs/-/memfs-3.4.1.tgz"; - sha512 = "1c9VPVvW5P7I85c35zAdEr1TD5+F11IToIHIlrVIcflfnzPkJa0ZoYEoEdYDP8KgPFoSZ/opDrUsAoZWym3mtw=="; + url = "https://registry.npmjs.org/memfs/-/memfs-3.4.3.tgz"; + sha512 = "eivjfi7Ahr6eQTn44nvTnR60e4a1Fs1Via2kCR5lHo/kyNoiMWaXCNJ/GpSd0ilXas2JSOl9B5FTIhflXu0hlg=="; }; }; "memoize-one-5.2.1" = { @@ -43688,13 +43787,13 @@ let sha512 = "AY9lGmUznFNsLr7Vm3hLCT7Ar0bN6Wninp3qA0E0/JBU4uRTRI4fIgM1I3+nbjLf23mwh+vrHut0ML63QB2acA=="; }; }; - "metalsmith-2.4.2" = { + "metalsmith-2.4.3" = { name = "metalsmith"; packageName = "metalsmith"; - version = "2.4.2"; + version = "2.4.3"; src = fetchurl { - url = "https://registry.npmjs.org/metalsmith/-/metalsmith-2.4.2.tgz"; - sha512 = "HS/MRADloJS3+O5V/+4f/khBkwtdYUQFWEGqeviLT/7wNgHWknMiIflV99JeYzj0hbw+L0aTb2spPlnWW4/Adg=="; + url = "https://registry.npmjs.org/metalsmith/-/metalsmith-2.4.3.tgz"; + sha512 = "W54oznz5wrBuE6lGj9ITq9Cj8HdAX8BkLptR+TInbhrkObinR7pm4z8zspYkCUVW/3UJnvZZJ55/LdikblC1vw=="; }; }; "method-missing-1.2.4" = { @@ -44615,6 +44714,15 @@ let sha512 = "nLDxIFRyhDblz3qMuq+SoRZED4+miJ/G+tdDrjkkkRnjAsBexeGpgjLEQ0blJy7rHhR2b93rhQY4SvyWu9v03g=="; }; }; + "minimatch-5.1.0" = { + name = "minimatch"; + packageName = "minimatch"; + version = "5.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/minimatch/-/minimatch-5.1.0.tgz"; + sha512 = "9TPBGGak4nHfGZsPBohm9AWg6NoT7QTCehS3BIJABslyZbzxfV78QM2Y6+i741OPZIafFAaiiEMh5OyIrJPgtg=="; + }; + }; "minimist-0.0.10" = { name = "minimist"; packageName = "minimist"; @@ -44687,15 +44795,6 @@ let sha512 = "1oPjfuLQa2caorJUM8HV8lGgWCc0qqAO1MNv/k05G4qslmsndV/5WdNZrqCiyqiz3wohia2Ij2B7w2Dr7/IyrA=="; }; }; - 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"oo-ascii-tree-1.58.0" = { + "oo-ascii-tree-1.59.0" = { name = "oo-ascii-tree"; packageName = "oo-ascii-tree"; - version = "1.58.0"; + version = "1.59.0"; src = fetchurl { - url = "https://registry.npmjs.org/oo-ascii-tree/-/oo-ascii-tree-1.58.0.tgz"; - sha512 = "XxnHnZsIpWoB1fHs0pKQXJpxIjpIcOkSar2tld7w1aVMPVk1RY7M5pi5FTcASvgrUUrA1mYXz0hGjg/Ve3lsYg=="; + url = "https://registry.npmjs.org/oo-ascii-tree/-/oo-ascii-tree-1.59.0.tgz"; + sha512 = "vRUOZ6ViKLh6Ib9wpW4WTiKcgSU6wsLhfg5ngFVX42J3NLOTtDT3AXaKU2HKfbU4HjvcfLmDXWfNv86q1T+ZVQ=="; }; }; "open-0.0.2" = { @@ -49585,13 +49693,13 @@ let sha512 = "/bjOqmgETBYB5BoEeGVea8dmvHb2m9GLy1E9W43yeyfP6QQCZGFNa+XRceJEuDB6zqr+gKpIAmlLebMpykw/MQ=="; }; }; - "p-map-5.3.0" = { + "p-map-5.4.0" = { name = "p-map"; packageName = "p-map"; - version = "5.3.0"; + version = "5.4.0"; src = fetchurl { - url = "https://registry.npmjs.org/p-map/-/p-map-5.3.0.tgz"; - sha512 = "SRbIQFoLYNezHkqZslqeg963HYUtqOrfMCxjNrFOpJ19WTYuq26rQoOXeX8QQiMLUlLqdYV/7PuDsdYJ7hLE1w=="; + url = "https://registry.npmjs.org/p-map/-/p-map-5.4.0.tgz"; + sha512 = "obHraaWkwl4y1NHR4vW5D5k+33+S5QrkFqsNrrvK0R7lilXdzo/DZgnloDvYUaRT+Sk6vVK47JUQMQY6cjPMXg=="; }; }; "p-map-series-2.1.0" = { @@ -49945,13 +50053,13 @@ let sha512 = "CdYEl03JDrRO3x18uHjBYA9TyoW8gy+ThVcypcDkxPtKlw76e4ejhYB6i9lJ+/cebbjpqPW/CijjqxwDTts8Ow=="; }; }; - "pacote-13.3.0" = { + "pacote-13.4.0" = { name = "pacote"; packageName = "pacote"; - version = "13.3.0"; + version = "13.4.0"; src = fetchurl { - url = "https://registry.npmjs.org/pacote/-/pacote-13.3.0.tgz"; - sha512 = "auhJAUlfC2TALo6I0s1vFoPvVFgWGx+uz/PnIojTTgkGwlK3Np8sGJ0ghfFhiuzJXTZoTycMLk8uLskdntPbDw=="; + url = "https://registry.npmjs.org/pacote/-/pacote-13.4.0.tgz"; + sha512 = "GCeiEtCeaXBB00lqsVek87pozP16AguQ2OeW5COVD/ItTFkidfbd1zX1+s7P4k+mjmpqB6RPcCgAGY7/zM8rtQ=="; }; }; "pad-0.0.5" = { @@ -50413,15 +50521,6 @@ let sha512 = "rgO9Zg5LLLkfJF9E6CCmXlSE4UVceloys8JrFqCcHloC3usd/kJCyPDwH2SOlzix2j3xaP9sUX3e8+kvkuleAA=="; }; }; - "parse5-4.0.0" = { - name = "parse5"; - packageName = "parse5"; - version = "4.0.0"; - src = fetchurl { - url = "https://registry.npmjs.org/parse5/-/parse5-4.0.0.tgz"; - sha512 = "VrZ7eOd3T1Fk4XWNXMgiGBK/z0MG48BWG2uQNU4I72fkQuKUTZpl+u9k+CxEG0twMVzSmXEEz12z5Fnw1jIQFA=="; - }; - }; "parse5-5.1.0" = { name = "parse5"; packageName = "parse5"; @@ -50602,6 +50701,15 @@ let sha512 = "w9n/Ot5I7orGD4y+7V3EFJCQEznE5RxHamUxcqLT2QoJY0f2JdN8GyHonYFvN0Vz+L6lUJfVhrk2aZz2LbuREw=="; }; }; + "passport-0.5.3" = { + name = "passport"; + packageName = "passport"; + version = "0.5.3"; + src = fetchurl { + url = "https://registry.npmjs.org/passport/-/passport-0.5.3.tgz"; + sha512 = "gGc+70h4gGdBWNsR3FuV3byLDY6KBTJAIExGFXTpQaYfbbcHCBlRRKx7RBQSpqEqc5Hh2qVzRs7ssvSfOpkUEA=="; + }; + }; "passport-http-bearer-1.0.1" = { name = "passport-http-bearer"; packageName = "passport-http-bearer"; @@ -51340,13 +51448,13 @@ let sha512 = "IWo0HwnxUEH9OtQ3qEZsKUbpdStRSomS18Gx4UV5JT1fj/E/opYGZMgpcdzC1+3ouBJECV1evzt0778S2RJ+/Q=="; }; }; - "pkg-5.6.0" = { + "pkg-5.7.0" = { name = "pkg"; packageName = "pkg"; - version = "5.6.0"; + version = "5.7.0"; src = fetchurl { - url = "https://registry.npmjs.org/pkg/-/pkg-5.6.0.tgz"; - sha512 = "mHrAVSQWmHA41RnUmRpC7pK9lNnMfdA16CF3cqOI22a8LZxOQzF7M8YWtA2nfs+d7I0MTDXOtkDsAsFXeCpYjg=="; + url = "https://registry.npmjs.org/pkg/-/pkg-5.7.0.tgz"; + sha512 = "PTiAjNq/CGAtK5qUBR6pjheqnipTFjeecgSgIKEcAOJA4GpmZeOZC8pMOoT0rfes5vHsmcFo7wbSRTAmXQurrg=="; }; }; "pkg-conf-1.1.3" = { @@ -51394,13 +51502,13 @@ let sha512 = "NPE8TDbzl/3YQYY7CSS228s3g2ollTFnc+Qi3tqmqJp9Vg2ovUpixcJEo2HJScN2Ez+kEaal6y70c0ehqJBJeA=="; }; }; - "pkg-fetch-3.3.0" = { + "pkg-fetch-3.4.1" = { name = "pkg-fetch"; packageName = "pkg-fetch"; - version = "3.3.0"; + version = "3.4.1"; src = fetchurl { - url = "https://registry.npmjs.org/pkg-fetch/-/pkg-fetch-3.3.0.tgz"; - sha512 = "xJnIZ1KP+8rNN+VLafwu4tEeV4m8IkFBDdCFqmAJz9K1aiXEtbARmdbEe6HlXWGSVuShSHjFXpfkKRkDBQ5kiA=="; + url = "https://registry.npmjs.org/pkg-fetch/-/pkg-fetch-3.4.1.tgz"; + sha512 = "fS4cdayCa1r4jHkOKGPJKnS9PEs6OWZst+s+m0+CmhmPZObMnxoRnf9T9yUWl+lzM2b5aJF7cnQIySCT7Hq8Dg=="; }; }; "pkg-up-2.0.0" = { @@ -51736,13 +51844,13 @@ let sha512 = "Se+2isanIcEqf2XMHjyUKskczxbPH7dQnlMjXX6+dybayyHvAf/TCgyMRlzf/B6QDhAEFOGes0pzRo3by4AbMA=="; }; }; - "portscanner-2.1.1" = { + "portscanner-2.2.0" = { name = "portscanner"; packageName = "portscanner"; - version = "2.1.1"; + version = "2.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/portscanner/-/portscanner-2.1.1.tgz"; - sha1 = "eabb409e4de24950f5a2a516d35ae769343fbb96"; + url = "https://registry.npmjs.org/portscanner/-/portscanner-2.2.0.tgz"; + sha512 = "IFroCz/59Lqa2uBvzK3bKDbDDIEaAY8XJ1jFxcLWTqosrsc32//P4VuSB2vZXoHiHqOmx8B5L5hnKOxL/7FlPw=="; }; }; "posix-character-classes-0.1.1" = { @@ -51799,13 +51907,13 @@ let sha512 = "lg6eITwYe9v6Hr5CncVbK70SoioNQIq81nsaG86ev5hAidQvmOeETBqs7jm43K2F5/Ley3ytDtriImV6TpNiSg=="; }; }; - "postcss-8.4.13" = { + "postcss-8.4.14" = { name = "postcss"; packageName = "postcss"; - version = "8.4.13"; + version = "8.4.14"; src = fetchurl { - url = "https://registry.npmjs.org/postcss/-/postcss-8.4.13.tgz"; - sha512 = "jtL6eTBrza5MPzy8oJLFuUscHDXTV5KcLlqAWHl5q5WYRfnNRGSmOZmOZ1T6Gy7A99mOZfqungmZMpMmCVJ8ZA=="; + url = "https://registry.npmjs.org/postcss/-/postcss-8.4.14.tgz"; + sha512 = "E398TUmfAYFPBSdzgeieK2Y1+1cpdxJx8yXbK/m57nRhKSmk1GB2tO4lbLBtlkfPQTDKfe4Xqv1ASWPpayPEig=="; }; }; "postcss-calc-7.0.5" = { @@ -53464,13 +53572,13 @@ let sha1 = "212d5bfe1318306a420f6402b8e26ff39647a849"; }; }; - "proto3-json-serializer-0.1.8" = { + "proto3-json-serializer-0.1.9" = { name = "proto3-json-serializer"; packageName = "proto3-json-serializer"; - version = "0.1.8"; + version = "0.1.9"; src = fetchurl { - url = "https://registry.npmjs.org/proto3-json-serializer/-/proto3-json-serializer-0.1.8.tgz"; - sha512 = "ACilkB6s1U1gWnl5jtICpnDai4VCxmI9GFxuEaYdxtDG2oVI3sVFIUsvUZcQbJgtPM6p+zqKbjTKQZp6Y4FpQw=="; + url = "https://registry.npmjs.org/proto3-json-serializer/-/proto3-json-serializer-0.1.9.tgz"; + sha512 = "A60IisqvnuI45qNRygJjrnNjX2TMdQGMY+57tR3nul3ZgO2zXkR9OGR8AXxJhkqx84g0FTnrfi3D5fWMSdANdQ=="; }; }; "protobufjs-3.8.2" = { @@ -54562,6 +54670,15 @@ let sha512 = "U1uufzBjz3+PkpCxFrWzh4OrMIdIb2ztzCu0YEPfRHjHswcSwHZswnK+WdsOQJsRV8WeTg3jLhJR4D867+fjsA=="; }; }; + "puppeteer-14.1.0" = { + name = "puppeteer"; + packageName = "puppeteer"; + version = "14.1.0"; + src = fetchurl { + url = "https://registry.npmjs.org/puppeteer/-/puppeteer-14.1.0.tgz"; + sha512 = "T3eB4f6k9HVttYvyy8drGIKb04M+vxhepqM7qqcVCBTNT3T6M9cUaJT4k7P+a6wSonObJSJUP98JkPDQG+3fJw=="; + }; + }; "purest-3.1.0" = { name = "purest"; packageName = "purest"; @@ -54634,13 +54751,13 @@ let sha512 = "pMpnA0qRdFp32b1sJl1wOJNxZLQ2cbQx+k6tjNtZ8CpvVhNqEPRgivZ2WOUev2YMajecdH7ctUPDvEe87nariQ=="; }; }; - "pyright-1.1.246" = { + "pyright-1.1.247" = { name = "pyright"; packageName = "pyright"; - version = "1.1.246"; + version = "1.1.247"; src = fetchurl { - url = "https://registry.npmjs.org/pyright/-/pyright-1.1.246.tgz"; - sha512 = "TEbHs4HD0J4/KGpXLqLBauOVT8G+yC7W8FKjyd00AzM9eyB+sx0EpujPnLKf6qI7x6LZJBgNoxpkPVq/6Wcq3A=="; + url = "https://registry.npmjs.org/pyright/-/pyright-1.1.247.tgz"; + sha512 = "G+TofKBoUsiaBQGYgg6VbQKANPxMaJ2i1H8oVNuXR9x7RGhNNNCuuIvga7StRy2dbsDdzIGaURsTzSf35ckYRw=="; }; }; "q-0.9.7" = { @@ -56344,13 +56461,13 @@ let sha1 = "b66d828cdcafe6b4b8a428a7def4c6bcac31c8b4"; }; }; - "redoc-2.0.0-rc.69" = { + "redoc-2.0.0-rc.70" = { name = "redoc"; packageName = "redoc"; - version = "2.0.0-rc.69"; + version = "2.0.0-rc.70"; src = fetchurl { - url = "https://registry.npmjs.org/redoc/-/redoc-2.0.0-rc.69.tgz"; - sha512 = "AFedbb9h0I98z0lBF2hkkn3M09CsF/zXfRCd07vGL0fZg72/VFPAmHN7CyFRGg/whVEstZ2iUhN2jbN6MmTTDQ=="; + url = "https://registry.npmjs.org/redoc/-/redoc-2.0.0-rc.70.tgz"; + sha512 = "sdmZ8FX4JjF50hTSjHJ64Ccu9Ewa2O8+Fo8pCLg8GHFrbaFJ2E+KBDK9pGuAqNi61fm3Z5c91Ur7zqpITkUpNg=="; }; }; "reduce-component-1.0.1" = { @@ -60637,13 +60754,13 @@ let sha512 = "s04vrBswdQBUmuWJuuNTmXUVJhP0cVky8bBDhdkf8y0Ptsu7fKU2LuLbts9g+pdmAdyMMn8F/9Mf1/wbtUN0fg=="; }; }; - "socket.io-4.5.0" = { + "socket.io-4.5.1" = { name = "socket.io"; packageName = "socket.io"; - version = "4.5.0"; + version = "4.5.1"; src = fetchurl { - url = "https://registry.npmjs.org/socket.io/-/socket.io-4.5.0.tgz"; - sha512 = "slTYqU2jCgMjXwresG8grhUi/cC6GjzmcfqArzaH3BN/9I/42eZk9yamNvZJdBfTubkjEdKAKs12NEztId+bUA=="; + url = "https://registry.npmjs.org/socket.io/-/socket.io-4.5.1.tgz"; + sha512 = "0y9pnIso5a9i+lJmsCdtmTTgJFFSvNQKDnPQRz28mGNnxbmqYg2QPtJTLFxhymFZhAIn50eHAKzJeiNaKr+yUQ=="; }; }; "socket.io-adapter-0.2.0" = { @@ -60727,13 +60844,13 @@ let sha512 = "2B9LqSunN60yV8F7S84CCEEcgbYNfrn7ejIInZtLZ7ppWtiX8rGZAjvdCvbnC8bqo/9RlCNOUsORLyskxSFP1g=="; }; }; - "socket.io-client-4.5.0" = { + "socket.io-client-4.5.1" = { name = "socket.io-client"; packageName = "socket.io-client"; - version = "4.5.0"; + version = "4.5.1"; src = fetchurl { - url = "https://registry.npmjs.org/socket.io-client/-/socket.io-client-4.5.0.tgz"; - sha512 = "HW61c1G7OrYGxaI79WRn17+b03iBCdvhBj4iqyXHBoL5M8w2MSO/vChsjA93knG4GYEai1/vbXWJna9dzxXtSg=="; + url = "https://registry.npmjs.org/socket.io-client/-/socket.io-client-4.5.1.tgz"; + sha512 = "e6nLVgiRYatS+AHXnOnGi4ocOpubvOUCGhyWw8v+/FxW8saHkinG6Dfhi9TU0Kt/8mwJIAASxvw6eujQmjdZVA=="; }; }; "socket.io-parser-2.1.2" = { @@ -62519,15 +62636,6 @@ let sha512 = "KXDYZ9dszj6bzvnEMRYvxgeTHU74QBFL54XKtP3nyMuJ81CFYtABZ3bAzL2EdFUaEwJOBOgENyFj3R7oTzDyyw=="; }; }; - "stream-0.0.2" = { - name = "stream"; - packageName = "stream"; - version = "0.0.2"; - src = fetchurl { - url = "https://registry.npmjs.org/stream/-/stream-0.0.2.tgz"; - sha1 = "7f5363f057f6592c5595f00bc80a27f5cec1f0ef"; - }; - }; "stream-browserify-2.0.2" = { name = "stream-browserify"; packageName = "stream-browserify"; @@ -62834,13 +62942,13 @@ let sha512 = "OG79qm3AujAM9ImoqgWEY1xG4HX+Lw+yY6qZj9R1K2mhF5bEmQ849wvrb+4vt4jLMLzwXttJlQbOdPOQVRv7DQ=="; }; }; - "streamroller-3.0.8" = { + "streamroller-3.0.9" = { name = "streamroller"; packageName = "streamroller"; - version = "3.0.8"; + version = "3.0.9"; src = fetchurl { - url = "https://registry.npmjs.org/streamroller/-/streamroller-3.0.8.tgz"; - sha512 = "VI+ni3czbFZrd1MrlybxykWZ8sMDCMtTU7YJyhgb9M5X6d1DDxLdJr+gSnmRpXPMnIWxWKMaAE8K0WumBp3lDg=="; + url = "https://registry.npmjs.org/streamroller/-/streamroller-3.0.9.tgz"; + sha512 = "Y46Aq/ftqFP6Wb6sK79hgnZeRfEVz2F0nquBy4lMftUuJoTiwKa6Y96AWAUGV1F3CjhFark9sQmzL9eDpltkRw=="; }; }; "streamsearch-0.1.2" = { @@ -63500,6 +63608,15 @@ let sha512 = "k55yxKHwaXnpYGsOzg4Vl8+tDrWylxDEpknGjhTiZB8dFRU5rTo9CAzeycivxV3s+zlTKwrs6WxMxR95n26kwg=="; }; }; + "strnum-1.0.5" = { + name = "strnum"; + packageName = "strnum"; + version = "1.0.5"; + src = fetchurl { + url = "https://registry.npmjs.org/strnum/-/strnum-1.0.5.tgz"; + sha512 = "J8bbNyKKXl5qYcR36TIO8W3mVGVHrmmxsd5PAItGkmyzwJvybiw2IVq5nqd0i4LSNSkB/sx9VHllbfFdr9k1JA=="; + }; + }; "strong-data-uri-1.0.6" = { name = "strong-data-uri"; packageName = "strong-data-uri"; @@ -63968,13 +64085,13 @@ let sha512 = "I2SV1w/AveMvgIQlUF/ZOO3PYVnhxfcpNyGt8pxpUVhPfyfL/CZBkkw/KPfuFix5FJ9TnnNYMhACK3DtSaYVVQ=="; }; }; - "svelte2tsx-0.5.9" = { + "svelte2tsx-0.5.10" = { name = "svelte2tsx"; packageName = "svelte2tsx"; - version = "0.5.9"; + version = "0.5.10"; src = fetchurl { - url = "https://registry.npmjs.org/svelte2tsx/-/svelte2tsx-0.5.9.tgz"; - sha512 = "xTDASjlh+rKo4QRhTRYSH87sS7fRoyX67xhGIMPKa3FYqftRHRmMes6nVgEskiuhBovslNHYYpMMg5YM5n/STg=="; + url = "https://registry.npmjs.org/svelte2tsx/-/svelte2tsx-0.5.10.tgz"; + sha512 = "nokQ0HTTWMcNX6tLrDLiOmJCuqjKZU9nCZ6/mVuCL3nusXdbp+9nv69VG2pCy7uQC66kV4Ls+j0WfvvJuGVnkg=="; }; }; "sver-compat-1.5.0" = { @@ -64130,13 +64247,13 @@ let sha512 = "8z18eX8G/jbTXYzyNIaobrnD7PSN7yU/YkSasMmajrXtw0FGS64XjrKn5v37d36qmU3o1xLeuYnktshRr7uIFw=="; }; }; - "swagger-ui-dist-4.11.0" = { + "swagger-ui-dist-4.11.1" = { name = "swagger-ui-dist"; packageName = "swagger-ui-dist"; - version = "4.11.0"; + version = "4.11.1"; src = fetchurl { - url = "https://registry.npmjs.org/swagger-ui-dist/-/swagger-ui-dist-4.11.0.tgz"; - sha512 = "Jo4oq4Nc7LaTYuvyo1VY3z3OWmGZCzZon8s92auKqpIuVCJo3t1Qih+S+Ph8lS5+ZbvF2ugqWvXk83boXQux1w=="; + url = "https://registry.npmjs.org/swagger-ui-dist/-/swagger-ui-dist-4.11.1.tgz"; + sha512 = "pf3kfSTYdF9mYFY2VnfJ51wnXlSVhEGdtymhpHzfbFw2jTbiEWgBoVz5EB9aW2EaJvUGTM1YHAXYZX7Jk4RdAQ=="; }; }; "swagger2openapi-7.0.8" = { @@ -64455,15 +64572,6 @@ let sha512 = "a20gEsvHnWe0ygBY8JbxoM4w3SJdhc7ZAuxkLqh+nvNQN2IOt0B5lLgM490X5Hl8FF0dl0tOf2ewFYAlIFgzVA=="; }; }; - "tar-4.4.6" = { - name = "tar"; - packageName = "tar"; - version = "4.4.6"; - src = fetchurl { - url = "https://registry.npmjs.org/tar/-/tar-4.4.6.tgz"; - sha512 = "tMkTnh9EdzxyfW+6GK6fCahagXsnYk6kE6S9Gr9pjVdys769+laCTbodXDhPAjzVtEBazRgP0gYqOjnk9dQzLg=="; - }; - }; "tar-6.0.5" = { name = "tar"; packageName = "tar"; @@ -65166,13 +65274,13 @@ let sha512 = "jaRjI2WxN3W1V8/FMZ9HKIBXixtiqs3SQSX4/YGIiP3gL6djW48VoZq9tDqeCWs3MT8YY5wb/zli8VW8snY1CA=="; }; }; - "throughput-1.0.0" = { + "throughput-1.0.1" = { name = "throughput"; packageName = "throughput"; - version = "1.0.0"; + version = "1.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/throughput/-/throughput-1.0.0.tgz"; - sha512 = "owbJr1scbvJjvHkRONwHyY3Z4zIFTr9s0q9o6fYSnc8ur+2RenH88siGBat9agc4AgarrDiYSCZqEvucL6C+KQ=="; + url = "https://registry.npmjs.org/throughput/-/throughput-1.0.1.tgz"; + sha512 = "4Mvv5P4xyVz6RM07wS3tGyZ/kPAiKtLeqznq3hK4pxDiTUSyQ5xeFlBiWxflCWexvSnxo2aAfedzKajJqihz4Q=="; }; }; "thunkify-2.1.2" = { @@ -66534,22 +66642,22 @@ let sha1 = "27a5dea06b36b04a0a9966774b290868f0fc40fd"; }; }; - "turndown-4.0.2" = { + "turndown-7.0.0" = { name = "turndown"; packageName = "turndown"; - version = "4.0.2"; + version = "7.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/turndown/-/turndown-4.0.2.tgz"; - sha512 = "pqZ6WrHFGnxXC9q2xJ3Qa7EoLAwrojgFRajWZjxTKwbz9vnNnyi8lLjiD5h86UTPOcMlEyHjm6NMhjEDdlc25A=="; + url = "https://registry.npmjs.org/turndown/-/turndown-7.0.0.tgz"; + sha512 = "G1FfxfR0mUNMeGjszLYl3kxtopC4O9DRRiMlMDDVHvU1jaBkGFg4qxIyjIk2aiKLHyDyZvZyu4qBO2guuYBy3Q=="; }; }; - "turndown-7.0.0" = { + "turndown-7.1.1" = { name = "turndown"; packageName = "turndown"; - version = "7.0.0"; + version = "7.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/turndown/-/turndown-7.0.0.tgz"; - sha512 = "G1FfxfR0mUNMeGjszLYl3kxtopC4O9DRRiMlMDDVHvU1jaBkGFg4qxIyjIk2aiKLHyDyZvZyu4qBO2guuYBy3Q=="; + url = "https://registry.npmjs.org/turndown/-/turndown-7.1.1.tgz"; + sha512 = "BEkXaWH7Wh7e9bd2QumhfAXk5g34+6QUmmWx+0q6ThaVOLuLUqsnkq35HQ5SBHSaxjSfSM7US5o4lhJNH7B9MA=="; }; }; "tus-js-client-2.1.1" = { @@ -66993,15 +67101,6 @@ let sha512 = "TCTIul70LyWe6IJWT8QSYeA54WQe8EjQFU4wY52Fasj5UKx88LNYKCgBEHcOMOrFF1rKGbD8v/xcNWVUq9SymA=="; }; }; - "typescript-4.6.2" = { - name = "typescript"; - packageName = "typescript"; - version = "4.6.2"; - src = fetchurl { - url = "https://registry.npmjs.org/typescript/-/typescript-4.6.2.tgz"; - sha512 = "HM/hFigTBHZhLXshn9sN37H085+hQGeJHJ/X7LpBWLID/fbc2acUMfU+lGD98X81sKP+pFa9f0DZmCwB9GnbAg=="; - }; - }; "typescript-4.6.4" = { name = "typescript"; packageName = "typescript"; @@ -68694,16 +68793,6 @@ let sha512 = "PCKbdWw85JsYMvmCv5GH3kXmM66rCd9m1hBEDutPNv94b/pqCMT4NtcKyeWYvLFiE8b+ha1Jdl8XAaUdPn5QTg=="; }; }; - "uslug-git+https://github.com/laurent22/uslug.git#emoji-support" = { - name = "uslug"; - packageName = "uslug"; - version = "1.0.4"; - src = fetchgit { - url = "https://github.com/laurent22/uslug.git"; - rev = "8c12bc7678eaefa752e673ea9cfbc0b1a14d7237"; - sha256 = "679cfa6f5c73bc070a567b942a648a213beb608efdff876c715f008ba11f5039"; - }; - }; "ut_metadata-3.5.2" = { name = "ut_metadata"; packageName = "ut_metadata"; @@ -70036,13 +70125,13 @@ let sha512 = "FS5ou3G+WRnPPr/tWVs8b/jVzeDacgZHy/y7/QQW7maSPFEAmRt2bFGUJtJVEUDLBqtDm/3VGMJ7D31cF2U1tw=="; }; }; - "vsce-2.7.0" = { + "vsce-2.8.0" = { name = "vsce"; packageName = "vsce"; - version = "2.7.0"; + version = "2.8.0"; src = fetchurl { - url = "https://registry.npmjs.org/vsce/-/vsce-2.7.0.tgz"; - sha512 = "CKU34wrQlbKDeJCRBkd1a8iwF9EvNxcYMg9hAUH6AxFGR6Wo2IKWwt3cJIcusHxx6XdjDHWlfAS/fJN30uvVnA=="; + url = "https://registry.npmjs.org/vsce/-/vsce-2.8.0.tgz"; + sha512 = "p6BTbUVp33Ed0OWRRhRQT55yrmgLEca2fTmqxZJW44T1eP4yVWEsdaNIDsjFIeuCrjG/CYvwi1QLG4ql0s7bDA=="; }; }; "vscode-css-languageservice-3.0.13" = { @@ -70234,13 +70323,13 @@ let sha512 = "nkiNDGI+Ytp7uj1lxHXddXCoEunhcry1D+KmVHBfUUgWT9jMF8ZJyH5KQObdF+OGAh7bXZxD/SV4uGwSCeHHWA=="; }; }; - "vscode-jsonrpc-8.0.0-next.5" = { + "vscode-jsonrpc-8.0.0-next.7" = { name = "vscode-jsonrpc"; packageName = "vscode-jsonrpc"; - version = "8.0.0-next.5"; + version = "8.0.0-next.7"; src = fetchurl { - url = "https://registry.npmjs.org/vscode-jsonrpc/-/vscode-jsonrpc-8.0.0-next.5.tgz"; - sha512 = "owRllqcFTnz5rXxcbmHPFGmpFmLqj9Z1V3Dzrv+s8ejOHLIT62Pyb5Uqzyl2/in2VP22DmzErPgZwrxjLCIKiQ=="; + url = "https://registry.npmjs.org/vscode-jsonrpc/-/vscode-jsonrpc-8.0.0-next.7.tgz"; + sha512 = "JX/F31LEsims0dAlOTKFE4E+AJMiJvdRSRViifFJSqSN7EzeYyWlfuDchF7g91oRNPZOIWfibTkDf3/UMsQGzQ=="; }; }; "vscode-jsonrpc-8.0.1" = { @@ -70261,13 +70350,13 @@ let sha512 = "0fuBZj9pMkeJ8OMyIvSGeRaRVhUaJt+yeFxi7a3sz/AbrngQdcxOovMXPgKuieoBSBKS05gXPS88BsWpJZfBkA=="; }; }; - "vscode-languageclient-8.0.0-next.8" = { + "vscode-languageclient-8.0.0-next.14" = { name = "vscode-languageclient"; packageName = "vscode-languageclient"; - version = "8.0.0-next.8"; + version = "8.0.0-next.14"; src = fetchurl { - url = "https://registry.npmjs.org/vscode-languageclient/-/vscode-languageclient-8.0.0-next.8.tgz"; - sha512 = "CBdYRIVqqlRmZ2YBeTk0S2QMtsL8ZJfbddlfvERmRPXW4Pimr7Nk+mYq16F/k3HbrO9Xt+RAFP1t6FIIbmuUGw=="; + url = "https://registry.npmjs.org/vscode-languageclient/-/vscode-languageclient-8.0.0-next.14.tgz"; + sha512 = "NqjkOuDTMu8uo+PhoMsV72VO9Gd3wBi/ZpOrkRUOrWKQo7yUdiIw183g8wjH8BImgbK9ZP51HM7TI0ZhCnI1Mw=="; }; }; "vscode-languageserver-3.5.1" = { @@ -70396,13 +70485,13 @@ let sha512 = "atmkGT/W6tF0cx4SaWFYtFs2UeSeC28RPiap9myv2YZTaTCFvTBEPNWrU5QRKfkyM0tbgtGo6T3UCQ8tkDpjzA=="; }; }; - "vscode-languageserver-protocol-3.17.0-next.12" = { + "vscode-languageserver-protocol-3.17.0-next.16" = { name = "vscode-languageserver-protocol"; packageName = "vscode-languageserver-protocol"; - version = "3.17.0-next.12"; + version = "3.17.0-next.16"; src = fetchurl { - url = "https://registry.npmjs.org/vscode-languageserver-protocol/-/vscode-languageserver-protocol-3.17.0-next.12.tgz"; - sha512 = "VLRcWKOpCXcx9UrqrS+NSF6pNxV498VGYGW+eyp9a79/F9ElUq3wdG6acXYlEfpWHuIxpm6MXps8FU88wqIgTg=="; + url = "https://registry.npmjs.org/vscode-languageserver-protocol/-/vscode-languageserver-protocol-3.17.0-next.16.tgz"; + sha512 = "tx4DnXw9u3N7vw+bx6n2NKp6FoxoNwiP/biH83AS30I2AnTGyLd7afSeH6Oewn2E8jvB7K15bs12sMppkKOVeQ=="; }; }; "vscode-languageserver-protocol-3.17.0-next.5" = { @@ -70522,13 +70611,13 @@ let sha512 = "VQcXnhKYxUW6OiRMhG++SzmZYMJwusXknJGd+FfdOnS1yHAo734OHyR0e2eEHDlv0/oWc8RZPgx/VKSKyondVg=="; }; }; - "vscode-languageserver-types-3.17.0-next.6" = { + "vscode-languageserver-types-3.17.0-next.9" = { name = "vscode-languageserver-types"; packageName = "vscode-languageserver-types"; - version = "3.17.0-next.6"; + version = "3.17.0-next.9"; src = fetchurl { - url = "https://registry.npmjs.org/vscode-languageserver-types/-/vscode-languageserver-types-3.17.0-next.6.tgz"; - sha512 = "rHYeCotiabJHgvIYzWjV8g0dHCxyOQtcryTv1Xa1horaQ4jx2V+rjLBstc6zMpCyrnZcjorwEcAvGBDCd6wudw=="; + url = "https://registry.npmjs.org/vscode-languageserver-types/-/vscode-languageserver-types-3.17.0-next.9.tgz"; + sha512 = "9/PeDNPYduaoXRUzYpqmu4ZV9L01HGo0wH9FUt+sSHR7IXwA7xoXBfNUlv8gB9H0D2WwEmMomSy1NmhjKQyn3A=="; }; }; "vscode-languageserver-types-3.17.1" = { @@ -71089,13 +71178,13 @@ let sha512 = "QgaeV+wmlB1Qaw9rS5a0ZDBt8GRcKkF+hGNSVxQ/HLm1lPCow3BKOhoILaXkYm7YozCcL7TjppRADBwFJugbuA=="; }; }; - "web-tree-sitter-0.19.4" = { + "web-tree-sitter-0.20.5" = { name = "web-tree-sitter"; packageName = "web-tree-sitter"; - version = "0.19.4"; + version = "0.20.5"; src = fetchurl { - url = "https://registry.npmjs.org/web-tree-sitter/-/web-tree-sitter-0.19.4.tgz"; - sha512 = "8G0xBj05hqZybCqBtW7RPZ/hWEtP3DiLTauQzGJZuZYfVRgw7qj7iaZ+8djNqJ4VPrdOO+pS2dR1JsTbsLxdYg=="; + url = "https://registry.npmjs.org/web-tree-sitter/-/web-tree-sitter-0.20.5.tgz"; + sha512 = "mpXlqIeEBE5Q71cnBnt8w6XKhIiKmllPECqsIFBtMvzcfCxA8+614iyMJXBCQo95Vs3y1zORLqiLJn25pYZ4Tw=="; }; }; "web3-utils-1.7.3" = { @@ -71206,15 +71295,6 @@ let sha512 = "6jJuJjg8znb/xRItk7bkT0+Q7AHCYjjFnvKIWQPkNIOyRqoCGvkOs0ipeQzrqz4l5FtN5ZI/ukEHroeX/o1/5Q=="; }; }; - "webpack-5.71.0" = { - name = "webpack"; - packageName = "webpack"; - version = "5.71.0"; - src = fetchurl { - url = "https://registry.npmjs.org/webpack/-/webpack-5.71.0.tgz"; - sha512 = "g4dFT7CFG8LY0iU5G8nBL6VlkT21Z7dcYDpJAEJV5Q1WLb9UwnFbrem1k7K52ILqEmomN7pnzWFxxE6SlDY56A=="; - }; - }; "webpack-5.72.1" = { name = "webpack"; packageName = "webpack"; @@ -71260,13 +71340,13 @@ let sha512 = "djelc/zGiz9nZj/U7PTBi2ViorGJXEWo/3ltkPbDyxCXhhEXkW0ce99falaok4TPj+AsxLiXJR0EBOb0zh9fKQ=="; }; }; - "webpack-dev-middleware-5.3.1" = { + "webpack-dev-middleware-5.3.3" = { name = "webpack-dev-middleware"; packageName = "webpack-dev-middleware"; - version = "5.3.1"; + version = "5.3.3"; src = fetchurl { - url = "https://registry.npmjs.org/webpack-dev-middleware/-/webpack-dev-middleware-5.3.1.tgz"; - sha512 = "81EujCKkyles2wphtdrnPg/QqegC/AtqNH//mQkBYSMqwFVCQrxM6ktB2O/SPlZy7LqeEfTbV3cZARGQz6umhg=="; + url = "https://registry.npmjs.org/webpack-dev-middleware/-/webpack-dev-middleware-5.3.3.tgz"; + sha512 = "hj5CYrY0bZLB+eTO+x/j67Pkrquiy7kWepMHmUMoPsmcUaeEnQJqFzHJOyxgWlq746/wUuA64p9ta34Kyb01pA=="; }; }; "webpack-dev-server-3.11.0" = { @@ -71413,13 +71493,13 @@ let sha512 = "7iZ+u28Ljw5hCnMiq0BCOeSYf0vCFQe/ORY0HgscTiKjQed8WqugpBUggJ2NTnB9fahn1kEnPRX2jf8Px5PhJw=="; }; }; - "webtorrent-1.8.19" = { + "webtorrent-1.8.20" = { name = "webtorrent"; packageName = "webtorrent"; - version = "1.8.19"; + version = "1.8.20"; src = fetchurl { - url = "https://registry.npmjs.org/webtorrent/-/webtorrent-1.8.19.tgz"; - sha512 = "xwmzXREDid5AGtycjfiAmhfBu+mGq6UmbH/QK1X42EByyjGgu52nVW2wTGAhni4TSKM2avQa9lFM139/+/t/JQ=="; + url = "https://registry.npmjs.org/webtorrent/-/webtorrent-1.8.20.tgz"; + sha512 = "ASvisKzWXd7NxfHcZh460I3S0DcjdW2l3la0L98Ntw8SXxajBdIf1a+PwvhzH51c/k5bOxDP4wo4c/qg8FoeyQ=="; }; }; "webworkify-webpack-2.1.5" = { @@ -71503,15 +71583,6 @@ let sha1 = "966454e8765462e37644d3626f6742ce8b70965d"; }; }; - "whatwg-url-6.5.0" = { - name = "whatwg-url"; - packageName = "whatwg-url"; - version = "6.5.0"; - src = fetchurl { - url = "https://registry.npmjs.org/whatwg-url/-/whatwg-url-6.5.0.tgz"; - sha512 = "rhRZRqx/TLJQWUpQ6bmrt2UV4f0HCQ463yQuONJqC6fO2VoEb1pTYddbe59SkYq87aoM5A3bdhMZiUiVws+fzQ=="; - }; - }; "whatwg-url-7.1.0" = { name = "whatwg-url"; packageName = "whatwg-url"; @@ -71638,13 +71709,13 @@ let sha512 = "n1brCuqClxfFfq/Rb0ICg9giSZqCS+pLtccdag6C2HyufBrh3fBOiy9nb6ggRMvWOVH5GrdJskj5iGTZNxd7SA=="; }; }; - "which-typed-array-1.1.7" = { + "which-typed-array-1.1.8" = { name = "which-typed-array"; packageName = "which-typed-array"; - version = "1.1.7"; + version = "1.1.8"; src = fetchurl { - url = "https://registry.npmjs.org/which-typed-array/-/which-typed-array-1.1.7.tgz"; - sha512 = "vjxaB4nfDqwKI0ws7wZpxIlde1XrLX5uB0ZjpfshgmapJMD7jJWhZI+yToJTqaFByF0eNBcYxbjmCzoRP7CfEw=="; + url = "https://registry.npmjs.org/which-typed-array/-/which-typed-array-1.1.8.tgz"; + sha512 = "Jn4e5PItbcAHyLoRDwvPj1ypu27DJbtdYXUa5zsinrUx77Uvfb0cXwwnGMTn7cjUfhhqgVQnVJCwF+7cgU7tpw=="; }; }; "wide-align-1.1.3" = { @@ -72457,13 +72528,13 @@ let sha512 = "N1XQngeqMBoj9wM4ZFadVV2MymImeiFfYD+fJrNlcVcOHsJFFQe7n3b+aBoTPwARuq2HQxukfzVpQmAk1gN4sQ=="; }; }; - "xdl-59.2.36" = { + "xdl-59.2.37" = { name = "xdl"; packageName = "xdl"; - version = "59.2.36"; + version = "59.2.37"; src = fetchurl { - url = "https://registry.npmjs.org/xdl/-/xdl-59.2.36.tgz"; - sha512 = "XpooZ7+Hq8og+InhqXknp8Ykk6onrm/+cVXYjCfvVbgW9VUApAyOx4ldsIA6XXa4osLj8z1MFhp/vWoVFPjubg=="; + url = "https://registry.npmjs.org/xdl/-/xdl-59.2.37.tgz"; + sha512 = "a45/sS1jiOp+F5Z3Qf5x1K1ZODIue4md41iR+26uG9l8wWkxx27ulkqR+TiB4bxdpIY+5BVHC8GgXl6qs63FqA=="; }; }; "xenvar-0.5.1" = { @@ -72971,13 +73042,13 @@ let sha512 = "5kGSQrzDyjCk0BLuFfjkoUE9vYcoyrwZIZ+GnpOSM9vhkvPjItYiWJ1jpRSo0aU4QmsoNrFwDT4O7XS2UGcBQg=="; }; }; - "yaml-2.0.1" = { + "yaml-2.1.0" = { name = "yaml"; packageName = "yaml"; - version = "2.0.1"; + version = "2.1.0"; src = fetchurl { - url = "https://registry.npmjs.org/yaml/-/yaml-2.0.1.tgz"; - sha512 = "1NpAYQ3wjzIlMs0mgdBmYzLkFgWBIWrzYVDYfrixhoFNNgJ444/jT2kUT2sicRbJES3oQYRZugjB6Ro8SjKeFg=="; + url = "https://registry.npmjs.org/yaml/-/yaml-2.1.0.tgz"; + sha512 = "OuAINfTsoJrY5H7CBWnKZhX6nZciXBydrMtTHr1dC4nP40X5jyTIVlogZHxSlVZM8zSgXRfgZGsaHF4+pV+JRw=="; }; }; "yaml-ast-parser-0.0.43" = { @@ -73151,13 +73222,13 @@ let sha512 = "WJudfrk81yWFSOkZYpAZx4Nt7V4xp7S/uJkX0CnxovMCt1wCE8LNftPpNuF9X/u9gN5nsD7ycYtRcDf2pL3UiA=="; }; }; - "yargs-17.5.0" = { + "yargs-17.5.1" = { name = "yargs"; packageName = "yargs"; - version = "17.5.0"; + version = "17.5.1"; src = fetchurl { - url = "https://registry.npmjs.org/yargs/-/yargs-17.5.0.tgz"; - sha512 = "3sLxVhbAB5OC8qvVRebCLWuouhwh/rswsiDYx3WGxajUk/l4G20SKfrKKFeNIHboUFt2JFgv2yfn+5cgOr/t5A=="; + url = "https://registry.npmjs.org/yargs/-/yargs-17.5.1.tgz"; + sha512 = "t6YAJcxDkNX7NFYiVtKvWUz8l+PaKTLiL63mJYWR2GnHq2gjEWISzsLp9wg3aY36dY1j+gfIEL3pIF+XlJJfbA=="; }; }; "yargs-3.10.0" = { @@ -73547,13 +73618,13 @@ let sha512 = "Yj3yXweRc8LdRMrCC8nIc4kkjWecPAUVh0TI0OUrWXx6aX790vLcDlWca6I4vsyCGH3LpWxq0dJRcMOFoVqmeg=="; }; }; - "zen-observable-ts-1.2.3" = { + "zen-observable-ts-1.2.5" = { name = "zen-observable-ts"; packageName = "zen-observable-ts"; - version = "1.2.3"; + version = "1.2.5"; src = fetchurl { - url = "https://registry.npmjs.org/zen-observable-ts/-/zen-observable-ts-1.2.3.tgz"; - sha512 = "hc/TGiPkAWpByykMwDcem3SdUgA4We+0Qb36bItSuJC9xD0XVBZoFHYoadAomDSNf64CG8Ydj0Qb8Od8BUWz5g=="; + url = "https://registry.npmjs.org/zen-observable-ts/-/zen-observable-ts-1.2.5.tgz"; + sha512 = "QZWQekv6iB72Naeake9hS1KxHlotfRpe+WGNbNx5/ta+R3DNjVO2bswf63gXlWDcs+EMd7XY8HfVQyP1X6T4Zg=="; }; }; "zeromq-5.2.8" = { @@ -73726,7 +73797,7 @@ in sources."fs.realpath-1.0.0" sources."function-bind-1.1.1" sources."gauge-4.0.4" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."graceful-fs-4.2.10" sources."has-1.0.3" sources."has-flag-4.0.0" @@ -73797,16 +73868,16 @@ in sources."@npmcli/move-file-2.0.0" sources."@tootallnate/once-2.0.0" sources."brace-expansion-2.0.1" - sources."cacache-16.0.7" - sources."glob-8.0.2" + sources."cacache-16.1.0" + sources."glob-8.0.3" sources."http-proxy-agent-5.0.0" sources."lru-cache-7.10.1" - (sources."make-fetch-happen-10.1.3" // { + (sources."make-fetch-happen-10.1.4" // { dependencies = [ sources."minipass-fetch-2.1.0" ]; }) - sources."minimatch-5.0.1" + sources."minimatch-5.1.0" sources."ssri-9.0.0" ]; }) @@ -74067,7 +74138,7 @@ in sources."glob-parent-6.0.2" (sources."glob-stream-7.0.0" // { dependencies = [ - sources."glob-7.2.0" + sources."glob-7.2.3" ]; }) sources."graceful-fs-4.2.10" @@ -74229,13 +74300,15 @@ in "@astrojs/language-server" = nodeEnv.buildNodePackage { name = "_at_astrojs_slash_language-server"; packageName = "@astrojs/language-server"; - version = "0.17.0"; + version = "0.18.0"; src = fetchurl { - url = "https://registry.npmjs.org/@astrojs/language-server/-/language-server-0.17.0.tgz"; - sha512 = "8moxFL54ObrvRLVpeawjP1qy3eBmH0KmemZFHit7EVy7+K9MvMctdbp3bsaF8D+LfeXEJKJVw30UeU0EPNOZ1A=="; + url = "https://registry.npmjs.org/@astrojs/language-server/-/language-server-0.18.0.tgz"; + sha512 = "LcKrPMjMcDlzQBaBd+tbNEbXnh543ddrO8LN9D/D/BYCWjLERiFiCqPBzVe8KKEFDLik1MTKNvx6lKDse0IvyA=="; }; dependencies = [ sources."@astrojs/svelte-language-integration-0.1.4" + sources."@astrojs/vue-language-integration-0.1.0" + sources."@babel/parser-7.17.12" sources."@emmetio/abbreviation-2.2.3" sources."@emmetio/css-abbreviation-2.1.4" sources."@emmetio/scanner-1.0.0" @@ -74244,32 +74317,46 @@ in sources."vscode-uri-2.1.2" ]; }) + (sources."@vue/compiler-core-3.2.33" // { + dependencies = [ + sources."source-map-0.6.1" + ]; + }) + sources."@vue/compiler-dom-3.2.33" + (sources."@vue/compiler-sfc-3.2.33" // { + dependencies = [ + sources."source-map-0.6.1" + ]; + }) + sources."@vue/compiler-ssr-3.2.33" + sources."@vue/reactivity-3.2.33" + sources."@vue/reactivity-transform-3.2.33" + sources."@vue/runtime-core-3.2.33" + sources."@vue/shared-3.2.33" sources."dedent-js-1.0.1" sources."emmet-2.3.6" + sources."estree-walker-2.0.2" sources."jsonc-parser-2.3.1" sources."lodash-4.17.21" sources."lower-case-2.0.2" + sources."magic-string-0.25.9" + sources."nanoid-3.3.4" sources."no-case-3.0.4" sources."pascal-case-3.1.2" + sources."picocolors-1.0.0" + sources."postcss-8.4.14" sources."source-map-0.7.3" + sources."source-map-js-1.0.2" + sources."sourcemap-codec-1.4.8" sources."svelte-3.48.0" - sources."svelte2tsx-0.5.9" + sources."svelte2tsx-0.5.10" sources."tslib-2.4.0" sources."typescript-4.6.4" sources."vscode-css-languageservice-5.4.2" sources."vscode-html-languageservice-4.2.5" - sources."vscode-jsonrpc-6.0.0" - (sources."vscode-languageserver-7.0.0" // { - dependencies = [ - sources."vscode-languageserver-protocol-3.16.0" - sources."vscode-languageserver-types-3.16.0" - ]; - }) - (sources."vscode-languageserver-protocol-3.17.1" // { - dependencies = [ - sources."vscode-jsonrpc-8.0.1" - ]; - }) + sources."vscode-jsonrpc-8.0.1" + sources."vscode-languageserver-8.0.1" + sources."vscode-languageserver-protocol-3.17.1" sources."vscode-languageserver-textdocument-1.0.4" sources."vscode-languageserver-types-3.17.1" sources."vscode-nls-5.0.1" @@ -74554,15 +74641,15 @@ in "@commitlint/cli" = nodeEnv.buildNodePackage { name = "_at_commitlint_slash_cli"; packageName = "@commitlint/cli"; - version = "16.2.4"; + version = "17.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/@commitlint/cli/-/cli-16.2.4.tgz"; - sha512 = "rbvqvz9JI+uiKxV2nH65BtSU01fsADd3bxe9fWtO3rM0c+CI/H9FfzKkDLvSRmXjvk1G2/wXlCGeqO9IBT4X9g=="; + url = "https://registry.npmjs.org/@commitlint/cli/-/cli-17.0.0.tgz"; + sha512 = "Np6slCdVVG1XwMvwbZrXIzS1INPAD5QmN4L6al04AmCd4nAPU63gxgxC5Mz0Fmx7va23Uvb0S7yEFV1JPhvPUQ=="; }; dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -74572,20 +74659,20 @@ in sources."supports-color-5.5.0" ]; }) - sources."@commitlint/config-validator-16.2.1" - sources."@commitlint/ensure-16.2.1" - sources."@commitlint/execute-rule-16.2.1" - sources."@commitlint/format-16.2.1" - sources."@commitlint/is-ignored-16.2.4" - sources."@commitlint/lint-16.2.4" - sources."@commitlint/load-16.2.4" - sources."@commitlint/message-16.2.1" - sources."@commitlint/parse-16.2.1" - sources."@commitlint/read-16.2.1" - sources."@commitlint/resolve-extends-16.2.1" - sources."@commitlint/rules-16.2.4" - sources."@commitlint/to-lines-16.2.1" - (sources."@commitlint/top-level-16.2.1" // { + sources."@commitlint/config-validator-17.0.0" + sources."@commitlint/ensure-17.0.0" + sources."@commitlint/execute-rule-17.0.0" + sources."@commitlint/format-17.0.0" + sources."@commitlint/is-ignored-17.0.0" + sources."@commitlint/lint-17.0.0" + sources."@commitlint/load-17.0.0" + sources."@commitlint/message-17.0.0" + sources."@commitlint/parse-17.0.0" + sources."@commitlint/read-17.0.0" + sources."@commitlint/resolve-extends-17.0.0" + sources."@commitlint/rules-17.0.0" + sources."@commitlint/to-lines-17.0.0" + (sources."@commitlint/top-level-17.0.0" // { dependencies = [ sources."find-up-5.0.0" sources."locate-path-6.0.0" @@ -74593,7 +74680,7 @@ in sources."p-locate-5.0.0" ]; }) - sources."@commitlint/types-16.2.1" + sources."@commitlint/types-17.0.0" sources."@cspotcode/source-map-consumer-0.8.0" sources."@cspotcode/source-map-support-0.7.0" sources."@tsconfig/node10-1.0.8" @@ -74601,7 +74688,7 @@ in sources."@tsconfig/node14-1.0.1" sources."@tsconfig/node16-1.0.2" sources."@types/minimist-1.2.2" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/normalize-package-data-2.4.1" sources."@types/parse-json-4.0.0" sources."JSONStream-1.3.5" @@ -74624,7 +74711,7 @@ in sources."conventional-changelog-angular-5.0.13" sources."conventional-commits-parser-3.2.4" sources."cosmiconfig-7.0.1" - sources."cosmiconfig-typescript-loader-1.0.9" + sources."cosmiconfig-typescript-loader-2.0.0" sources."create-require-1.1.1" sources."cross-spawn-7.0.3" sources."dargs-7.0.0" @@ -74757,7 +74844,7 @@ in sources."y18n-5.0.8" sources."yallist-4.0.0" sources."yaml-1.10.2" - (sources."yargs-17.5.0" // { + (sources."yargs-17.5.1" // { dependencies = [ sources."yargs-parser-21.0.1" ]; @@ -74779,10 +74866,10 @@ in "@commitlint/config-conventional" = nodeEnv.buildNodePackage { name = "_at_commitlint_slash_config-conventional"; packageName = "@commitlint/config-conventional"; - version = "16.2.4"; + version = "17.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/@commitlint/config-conventional/-/config-conventional-16.2.4.tgz"; - sha512 = "av2UQJa3CuE5P0dzxj/o/B9XVALqYzEViHrMXtDrW9iuflrqCStWBAioijppj9URyz6ONpohJKAtSdgAOE0gkA=="; + url = "https://registry.npmjs.org/@commitlint/config-conventional/-/config-conventional-17.0.0.tgz"; + sha512 = "jttJXBIq3AuQCvUVwxSctCwKfHxxbALE0IB9OIHYCu/eQdOzPxN72pugeZsWDo1VK/T9iFx+MZoPb6Rb1/ylsw=="; }; dependencies = [ sources."array-ify-1.0.0" @@ -74814,7 +74901,7 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -74831,7 +74918,7 @@ in sources."@types/json-buffer-3.0.0" sources."@types/keyv-3.1.4" sources."@types/minimatch-3.0.5" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/normalize-package-data-2.4.1" sources."@types/responselike-1.0.0" sources."abort-controller-3.0.0" @@ -74958,7 +75045,7 @@ in sources."jsonfile-6.1.0" sources."jwa-2.0.0" sources."jws-4.0.0" - sources."keyv-4.2.7" + sources."keyv-4.2.9" sources."lines-and-columns-1.2.4" sources."locate-path-6.0.0" sources."lodash-4.17.21" @@ -75003,7 +75090,7 @@ in sources."p-finally-1.0.0" sources."p-limit-3.1.0" sources."p-locate-5.0.0" - (sources."p-map-5.3.0" // { + (sources."p-map-5.4.0" // { dependencies = [ sources."aggregate-error-4.0.1" sources."clean-stack-4.2.0" @@ -75118,7 +75205,7 @@ in sources."@hyperswarm/hypersign-2.1.1" sources."@hyperswarm/network-2.1.0" sources."@leichtgewicht/ip-codec-2.0.4" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."abstract-extension-3.1.1" sources."abstract-leveldown-6.2.3" sources."acorn-8.7.1" @@ -75314,7 +75401,7 @@ in sources."moment-2.29.3" sources."mountable-hypertrie-2.8.0" sources."ms-2.0.0" - sources."multicast-dns-7.2.4" + sources."multicast-dns-7.2.5" sources."mutexify-1.4.0" sources."nanoassert-2.0.0" sources."nanoguard-1.3.0" @@ -75479,7 +75566,7 @@ in sha512 = "hV1PG20mLFmYbSJvV+JIGVLUT3zzDt2snR9T7tKMBAVvGQBAfzodylbTZe+b20hNz3Max2Z4zsKVksRu71x1+A=="; }; dependencies = [ - sources."@babel/parser-7.17.10" + sources."@babel/parser-7.17.12" sources."@medable/mdctl-api-1.0.64" sources."@medable/mdctl-api-driver-1.0.64" sources."@medable/mdctl-axon-tools-1.0.64" @@ -75492,7 +75579,7 @@ in sources."@medable/mdctl-export-adapter-console-1.0.63" (sources."@medable/mdctl-export-adapter-tree-1.0.64" // { dependencies = [ - sources."glob-7.2.0" + sources."glob-7.2.3" sources."globby-10.0.2" ]; }) @@ -75514,7 +75601,7 @@ in sources."@types/markdown-it-12.2.3" sources."@types/mdurl-1.0.2" sources."@types/minimatch-3.0.5" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/tough-cookie-2.3.8" sources."abbrev-1.1.1" sources."abort-controller-3.0.0" @@ -75772,7 +75859,7 @@ in sources."extend-shallow-2.0.1" ]; }) - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-3.1.0" sources."ignore-4.0.6" sources."is-glob-3.1.0" @@ -75922,7 +76009,7 @@ in sources."map-visit-1.0.0" sources."markdown-it-12.3.2" sources."markdown-it-anchor-8.6.4" - sources."marked-4.0.15" + sources."marked-4.0.16" sources."md5.js-1.3.5" sources."mdurl-1.0.1" (sources."mem-4.3.0" // { @@ -76169,7 +76256,7 @@ in sources."reusify-1.0.4" (sources."rimraf-2.7.1" // { dependencies = [ - sources."glob-7.2.0" + sources."glob-7.2.3" ]; }) sources."ripemd160-2.0.2" @@ -76192,7 +76279,7 @@ in sources."shebang-regex-1.0.0" (sources."shelljs-0.8.5" // { dependencies = [ - sources."glob-7.2.0" + sources."glob-7.2.3" ]; }) sources."signal-exit-3.0.7" @@ -76505,15 +76592,15 @@ in "@nestjs/cli" = nodeEnv.buildNodePackage { name = "_at_nestjs_slash_cli"; packageName = "@nestjs/cli"; - version = "8.2.5"; + version = "8.2.6"; src = fetchurl { - url = "https://registry.npmjs.org/@nestjs/cli/-/cli-8.2.5.tgz"; - sha512 = "b5DzZ08q/6iWvLz+n2DhEyZ3rsOurN1ec1jYQaWC5DCVQoZCwyOew48bVf01kevTK4eZyQxPwuErf7HnFAc0oQ=="; + url = "https://registry.npmjs.org/@nestjs/cli/-/cli-8.2.6.tgz"; + sha512 = "uvwKbUZJmgdJu1D24e+uUqHnwoB/0R9hLfUJjr5pTvLlP/RJugHAdJr7m1dQe92Xzdyi36kBN4Id3RXHgfz1UA=="; }; dependencies = [ - sources."@angular-devkit/core-13.3.2" - sources."@angular-devkit/schematics-13.3.2" - (sources."@angular-devkit/schematics-cli-13.3.2" // { + sources."@angular-devkit/core-13.3.5" + sources."@angular-devkit/schematics-13.3.5" + (sources."@angular-devkit/schematics-cli-13.3.5" // { dependencies = [ sources."chalk-4.1.2" sources."inquirer-8.2.0" @@ -76523,7 +76610,7 @@ in }) sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -76533,18 +76620,13 @@ in sources."supports-color-5.5.0" ]; }) - (sources."@nestjs/schematics-8.0.11" // { - dependencies = [ - sources."@angular-devkit/core-13.3.5" - sources."@angular-devkit/schematics-13.3.5" - ]; - }) + sources."@nestjs/schematics-8.0.11" sources."@types/eslint-8.4.2" sources."@types/eslint-scope-3.7.3" sources."@types/estree-0.0.51" sources."@types/json-schema-7.0.11" sources."@types/json5-0.0.29" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/parse-json-4.0.0" sources."@webassemblyjs/ast-1.11.1" sources."@webassemblyjs/floating-point-hex-parser-1.11.1" @@ -76583,19 +76665,18 @@ in sources."buffer-5.7.1" sources."buffer-from-1.1.2" sources."callsites-3.1.0" - sources."caniuse-lite-1.0.30001340" + sources."caniuse-lite-1.0.30001341" sources."chalk-3.0.0" sources."chardet-0.7.0" sources."chokidar-3.5.3" sources."chrome-trace-event-1.0.3" sources."cli-cursor-3.1.0" sources."cli-spinners-2.6.1" - sources."cli-table3-0.6.1" + sources."cli-table3-0.6.2" sources."cli-width-3.0.0" sources."clone-1.0.4" sources."color-convert-2.0.1" sources."color-name-1.1.4" - sources."colors-1.4.0" sources."commander-4.1.1" sources."concat-map-0.0.1" sources."cosmiconfig-7.0.1" @@ -76624,7 +76705,7 @@ in sources."fast-json-stable-stringify-2.1.0" sources."figures-3.2.0" sources."fill-range-7.0.1" - (sources."fork-ts-checker-webpack-plugin-7.2.3" // { + (sources."fork-ts-checker-webpack-plugin-7.2.11" // { dependencies = [ sources."chalk-4.1.2" ]; @@ -76635,7 +76716,7 @@ in sources."fsevents-2.3.2" sources."function-bind-1.1.1" sources."get-stream-5.2.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."glob-to-regexp-0.4.1" sources."graceful-fs-4.2.10" @@ -76670,7 +76751,6 @@ in ]; }) sources."js-tokens-4.0.0" - sources."json-parse-better-errors-1.0.2" sources."json-parse-even-better-errors-2.3.1" sources."json-schema-traverse-1.0.0" sources."json5-1.0.1" @@ -76688,7 +76768,7 @@ in sources."lru-cache-6.0.0" sources."macos-release-2.5.0" sources."magic-string-0.25.7" - sources."memfs-3.4.1" + sources."memfs-3.4.3" sources."merge-stream-2.0.0" sources."mime-db-1.52.0" sources."mime-types-2.1.35" @@ -76786,14 +76866,14 @@ in }) sources."tslib-1.14.1" sources."type-fest-0.21.3" - sources."typescript-4.6.2" + sources."typescript-4.6.4" sources."universalify-2.0.0" sources."uri-js-4.4.1" sources."util-deprecate-1.0.2" sources."watchpack-2.3.1" sources."wcwidth-1.0.1" sources."webidl-conversions-4.0.2" - sources."webpack-5.71.0" + sources."webpack-5.72.1" sources."webpack-node-externals-3.0.0" sources."webpack-sources-3.2.3" sources."whatwg-url-7.1.0" @@ -76890,10 +76970,10 @@ in "@tailwindcss/forms" = nodeEnv.buildNodePackage { name = "_at_tailwindcss_slash_forms"; packageName = "@tailwindcss/forms"; - version = "0.5.1"; + version = "0.5.2"; src = fetchurl { - url = "https://registry.npmjs.org/@tailwindcss/forms/-/forms-0.5.1.tgz"; - sha512 = "QSwsFORnC2BAP0lRzQkz1pw+EzIiiPdk4e27vGQjyXkwJPeC7iLIRVndJzf9CJVbcrrIcirb/TfxF3gRTyFEVA=="; + url = "https://registry.npmjs.org/@tailwindcss/forms/-/forms-0.5.2.tgz"; + sha512 = "pSrFeJB6Bg1Mrg9CdQW3+hqZXAKsBrSG9MAfFLKy1pVA4Mb4W7C0k7mEhlmS2Dfo/otxrQOET7NJiJ9RrS563w=="; }; dependencies = [ sources."mini-svg-data-uri-1.4.4" @@ -76992,7 +77072,7 @@ in sources."async-limiter-1.0.1" sources."asynckit-0.4.0" sources."atob-2.1.2" - (sources."aws-sdk-2.1134.0" // { + (sources."aws-sdk-2.1137.0" // { dependencies = [ sources."uuid-3.3.2" ]; @@ -77283,12 +77363,16 @@ in sources."@apollographql/graphql-upload-8-fork-8.1.3" sources."@babel/code-frame-7.16.7" sources."@babel/compat-data-7.17.10" - (sources."@babel/core-7.17.10" // { + (sources."@babel/core-7.17.12" // { dependencies = [ sources."semver-6.3.0" ]; }) - sources."@babel/generator-7.17.10" + (sources."@babel/generator-7.17.12" // { + dependencies = [ + sources."@jridgewell/gen-mapping-0.3.1" + ]; + }) sources."@babel/helper-annotate-as-pure-7.16.7" sources."@babel/helper-builder-binary-assignment-operator-visitor-7.16.7" (sources."@babel/helper-compilation-targets-7.17.10" // { @@ -77296,8 +77380,8 @@ in sources."semver-6.3.0" ]; }) - sources."@babel/helper-create-class-features-plugin-7.17.9" - sources."@babel/helper-create-regexp-features-plugin-7.17.0" + sources."@babel/helper-create-class-features-plugin-7.17.12" + sources."@babel/helper-create-regexp-features-plugin-7.17.12" (sources."@babel/helper-define-polyfill-provider-0.3.1" // { dependencies = [ sources."semver-6.3.0" @@ -77309,9 +77393,9 @@ in sources."@babel/helper-hoist-variables-7.16.7" sources."@babel/helper-member-expression-to-functions-7.17.7" sources."@babel/helper-module-imports-7.16.7" - sources."@babel/helper-module-transforms-7.17.7" + sources."@babel/helper-module-transforms-7.17.12" sources."@babel/helper-optimise-call-expression-7.16.7" - sources."@babel/helper-plugin-utils-7.16.7" + sources."@babel/helper-plugin-utils-7.17.12" sources."@babel/helper-remap-async-to-generator-7.16.8" sources."@babel/helper-replace-supers-7.16.7" sources."@babel/helper-simple-access-7.17.7" @@ -77321,7 +77405,7 @@ in sources."@babel/helper-validator-option-7.16.7" sources."@babel/helper-wrap-function-7.16.8" sources."@babel/helpers-7.17.9" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -77331,30 +77415,30 @@ in sources."supports-color-5.5.0" ]; }) - sources."@babel/parser-7.17.10" - sources."@babel/plugin-bugfix-safari-id-destructuring-collision-in-function-expression-7.16.7" - sources."@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.16.7" - sources."@babel/plugin-proposal-async-generator-functions-7.16.8" - sources."@babel/plugin-proposal-class-properties-7.16.7" - sources."@babel/plugin-proposal-class-static-block-7.17.6" + sources."@babel/parser-7.17.12" + sources."@babel/plugin-bugfix-safari-id-destructuring-collision-in-function-expression-7.17.12" + sources."@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.17.12" + sources."@babel/plugin-proposal-async-generator-functions-7.17.12" + sources."@babel/plugin-proposal-class-properties-7.17.12" + sources."@babel/plugin-proposal-class-static-block-7.17.12" sources."@babel/plugin-proposal-dynamic-import-7.16.7" - sources."@babel/plugin-proposal-export-namespace-from-7.16.7" - sources."@babel/plugin-proposal-json-strings-7.16.7" - sources."@babel/plugin-proposal-logical-assignment-operators-7.16.7" - sources."@babel/plugin-proposal-nullish-coalescing-operator-7.16.7" + sources."@babel/plugin-proposal-export-namespace-from-7.17.12" + sources."@babel/plugin-proposal-json-strings-7.17.12" + sources."@babel/plugin-proposal-logical-assignment-operators-7.17.12" + sources."@babel/plugin-proposal-nullish-coalescing-operator-7.17.12" sources."@babel/plugin-proposal-numeric-separator-7.16.7" - sources."@babel/plugin-proposal-object-rest-spread-7.17.3" + sources."@babel/plugin-proposal-object-rest-spread-7.17.12" sources."@babel/plugin-proposal-optional-catch-binding-7.16.7" - sources."@babel/plugin-proposal-optional-chaining-7.16.7" - sources."@babel/plugin-proposal-private-methods-7.16.11" - sources."@babel/plugin-proposal-private-property-in-object-7.16.7" - sources."@babel/plugin-proposal-unicode-property-regex-7.16.7" + sources."@babel/plugin-proposal-optional-chaining-7.17.12" + sources."@babel/plugin-proposal-private-methods-7.17.12" + sources."@babel/plugin-proposal-private-property-in-object-7.17.12" + sources."@babel/plugin-proposal-unicode-property-regex-7.17.12" sources."@babel/plugin-syntax-async-generators-7.8.4" sources."@babel/plugin-syntax-class-properties-7.12.13" sources."@babel/plugin-syntax-class-static-block-7.14.5" sources."@babel/plugin-syntax-dynamic-import-7.8.3" sources."@babel/plugin-syntax-export-namespace-from-7.8.3" - sources."@babel/plugin-syntax-flow-7.16.7" + sources."@babel/plugin-syntax-flow-7.17.12" sources."@babel/plugin-syntax-json-strings-7.8.3" sources."@babel/plugin-syntax-logical-assignment-operators-7.10.4" sources."@babel/plugin-syntax-nullish-coalescing-operator-7.8.3" @@ -77364,49 +77448,49 @@ in sources."@babel/plugin-syntax-optional-chaining-7.8.3" sources."@babel/plugin-syntax-private-property-in-object-7.14.5" sources."@babel/plugin-syntax-top-level-await-7.14.5" - sources."@babel/plugin-syntax-typescript-7.17.10" - sources."@babel/plugin-transform-arrow-functions-7.16.7" - sources."@babel/plugin-transform-async-to-generator-7.16.8" + sources."@babel/plugin-syntax-typescript-7.17.12" + sources."@babel/plugin-transform-arrow-functions-7.17.12" + sources."@babel/plugin-transform-async-to-generator-7.17.12" sources."@babel/plugin-transform-block-scoped-functions-7.16.7" - sources."@babel/plugin-transform-block-scoping-7.16.7" - sources."@babel/plugin-transform-classes-7.16.7" - sources."@babel/plugin-transform-computed-properties-7.16.7" - sources."@babel/plugin-transform-destructuring-7.17.7" + sources."@babel/plugin-transform-block-scoping-7.17.12" + sources."@babel/plugin-transform-classes-7.17.12" + sources."@babel/plugin-transform-computed-properties-7.17.12" + sources."@babel/plugin-transform-destructuring-7.17.12" sources."@babel/plugin-transform-dotall-regex-7.16.7" - sources."@babel/plugin-transform-duplicate-keys-7.16.7" + sources."@babel/plugin-transform-duplicate-keys-7.17.12" sources."@babel/plugin-transform-exponentiation-operator-7.16.7" - sources."@babel/plugin-transform-flow-strip-types-7.16.7" - sources."@babel/plugin-transform-for-of-7.16.7" + sources."@babel/plugin-transform-flow-strip-types-7.17.12" + sources."@babel/plugin-transform-for-of-7.17.12" sources."@babel/plugin-transform-function-name-7.16.7" - sources."@babel/plugin-transform-literals-7.16.7" + sources."@babel/plugin-transform-literals-7.17.12" sources."@babel/plugin-transform-member-expression-literals-7.16.7" - sources."@babel/plugin-transform-modules-amd-7.16.7" - sources."@babel/plugin-transform-modules-commonjs-7.17.9" - sources."@babel/plugin-transform-modules-systemjs-7.17.8" - sources."@babel/plugin-transform-modules-umd-7.16.7" - sources."@babel/plugin-transform-named-capturing-groups-regex-7.17.10" - sources."@babel/plugin-transform-new-target-7.16.7" + sources."@babel/plugin-transform-modules-amd-7.17.12" + sources."@babel/plugin-transform-modules-commonjs-7.17.12" + sources."@babel/plugin-transform-modules-systemjs-7.17.12" + sources."@babel/plugin-transform-modules-umd-7.17.12" + sources."@babel/plugin-transform-named-capturing-groups-regex-7.17.12" + sources."@babel/plugin-transform-new-target-7.17.12" sources."@babel/plugin-transform-object-super-7.16.7" - sources."@babel/plugin-transform-parameters-7.16.7" + sources."@babel/plugin-transform-parameters-7.17.12" sources."@babel/plugin-transform-property-literals-7.16.7" sources."@babel/plugin-transform-regenerator-7.17.9" - sources."@babel/plugin-transform-reserved-words-7.16.7" + sources."@babel/plugin-transform-reserved-words-7.17.12" sources."@babel/plugin-transform-shorthand-properties-7.16.7" - sources."@babel/plugin-transform-spread-7.16.7" + sources."@babel/plugin-transform-spread-7.17.12" sources."@babel/plugin-transform-sticky-regex-7.16.7" - sources."@babel/plugin-transform-template-literals-7.16.7" - sources."@babel/plugin-transform-typeof-symbol-7.16.7" - sources."@babel/plugin-transform-typescript-7.16.8" + sources."@babel/plugin-transform-template-literals-7.17.12" + sources."@babel/plugin-transform-typeof-symbol-7.17.12" + sources."@babel/plugin-transform-typescript-7.17.12" sources."@babel/plugin-transform-unicode-escapes-7.16.7" sources."@babel/plugin-transform-unicode-regex-7.16.7" - (sources."@babel/preset-env-7.17.10" // { + (sources."@babel/preset-env-7.17.12" // { dependencies = [ sources."semver-6.3.0" ]; }) - sources."@babel/preset-flow-7.16.7" + sources."@babel/preset-flow-7.17.12" sources."@babel/preset-modules-0.1.5" - sources."@babel/preset-typescript-7.16.7" + sources."@babel/preset-typescript-7.17.12" (sources."@babel/register-7.17.7" // { dependencies = [ sources."make-dir-2.1.0" @@ -77416,8 +77500,8 @@ in }) sources."@babel/runtime-7.17.9" sources."@babel/template-7.16.7" - sources."@babel/traverse-7.17.10" - sources."@babel/types-7.17.10" + sources."@babel/traverse-7.17.12" + sources."@babel/types-7.17.12" sources."@hapi/hoek-9.3.0" sources."@hapi/topo-5.1.0" sources."@josephg/resolvable-1.0.1" @@ -77468,7 +77552,7 @@ in sources."@types/koa-compose-3.2.5" sources."@types/long-4.0.2" sources."@types/mime-1.3.2" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/normalize-package-data-2.4.1" sources."@types/qs-6.9.7" sources."@types/range-parser-1.2.4" @@ -77594,7 +77678,7 @@ in }) sources."call-bind-1.0.2" sources."camelcase-6.3.0" - sources."caniuse-lite-1.0.30001340" + sources."caniuse-lite-1.0.30001341" sources."caw-2.0.1" sources."chalk-4.1.2" sources."chardet-0.7.0" @@ -77722,7 +77806,7 @@ in sources."entities-2.2.0" sources."envinfo-7.8.1" sources."error-ex-1.3.2" - sources."es-abstract-1.20.0" + sources."es-abstract-1.20.1" sources."es-to-primitive-1.2.1" sources."escalade-3.1.1" sources."escape-html-1.0.3" @@ -77785,7 +77869,7 @@ in (sources."filelist-1.0.4" // { dependencies = [ sources."brace-expansion-2.0.1" - sources."minimatch-5.0.1" + sources."minimatch-5.1.0" ]; }) sources."filename-reserved-regex-2.0.0" @@ -77854,7 +77938,7 @@ in sources."get-value-2.0.6" sources."git-clone-0.1.0" sources."git-config-path-2.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" (sources."global-dirs-0.1.1" // { dependencies = [ @@ -78567,15 +78651,17 @@ in }; dependencies = [ sources."@babel/code-frame-7.16.7" - sources."@babel/generator-7.17.10" + sources."@babel/generator-7.17.12" sources."@babel/helper-validator-identifier-7.16.7" - sources."@babel/highlight-7.17.9" - sources."@babel/parser-7.17.10" + sources."@babel/highlight-7.17.12" + sources."@babel/parser-7.17.12" sources."@babel/template-7.16.7" - sources."@babel/types-7.17.10" - sources."@jridgewell/gen-mapping-0.1.1" + sources."@babel/types-7.17.12" + sources."@jridgewell/gen-mapping-0.3.1" + sources."@jridgewell/resolve-uri-3.0.7" sources."@jridgewell/set-array-1.1.1" sources."@jridgewell/sourcemap-codec-1.4.13" + sources."@jridgewell/trace-mapping-0.3.13" sources."@webassemblyjs/ast-1.11.1" sources."@webassemblyjs/floating-point-hex-parser-1.11.1" sources."@webassemblyjs/helper-api-error-1.11.1" @@ -78650,7 +78736,7 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - sources."@babel/highlight-7.17.9" + sources."@babel/highlight-7.17.12" sources."@sindresorhus/is-0.14.0" sources."@szmarczak/http-timer-1.1.2" sources."@types/acorn-4.0.6" @@ -78665,7 +78751,7 @@ in sources."@types/minimist-1.2.2" sources."@types/ms-0.7.31" sources."@types/nlcst-1.0.0" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/normalize-package-data-2.4.1" sources."@types/parse5-6.0.3" sources."@types/supports-color-8.1.1" @@ -78768,7 +78854,7 @@ in }) sources."git-diff-tree-1.1.0" sources."git-spawned-stream-1.0.1" - sources."glob-7.2.0" + sources."glob-7.2.3" (sources."global-dirs-3.0.0" // { dependencies = [ sources."ini-2.0.0" @@ -79135,24 +79221,28 @@ in sources."@ampproject/remapping-2.2.0" sources."@babel/code-frame-7.16.7" sources."@babel/compat-data-7.17.10" - sources."@babel/core-7.17.10" - sources."@babel/generator-7.17.10" + sources."@babel/core-7.17.12" + (sources."@babel/generator-7.17.12" // { + dependencies = [ + sources."@jridgewell/gen-mapping-0.3.1" + ]; + }) sources."@babel/helper-compilation-targets-7.17.10" sources."@babel/helper-environment-visitor-7.16.7" sources."@babel/helper-function-name-7.17.9" sources."@babel/helper-hoist-variables-7.16.7" sources."@babel/helper-module-imports-7.16.7" - sources."@babel/helper-module-transforms-7.17.7" + sources."@babel/helper-module-transforms-7.17.12" sources."@babel/helper-simple-access-7.17.7" sources."@babel/helper-split-export-declaration-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" sources."@babel/helper-validator-option-7.16.7" sources."@babel/helpers-7.17.9" - sources."@babel/highlight-7.17.9" - sources."@babel/parser-7.17.10" + sources."@babel/highlight-7.17.12" + sources."@babel/parser-7.17.12" sources."@babel/template-7.16.7" - sources."@babel/traverse-7.17.10" - sources."@babel/types-7.17.10" + sources."@babel/traverse-7.17.12" + sources."@babel/types-7.17.12" sources."@jridgewell/gen-mapping-0.1.1" sources."@jridgewell/resolve-uri-3.0.7" sources."@jridgewell/set-array-1.1.1" @@ -79166,7 +79256,7 @@ in sources."balanced-match-1.0.2" sources."brace-expansion-2.0.1" sources."browserslist-4.20.3" - sources."caniuse-lite-1.0.30001340" + sources."caniuse-lite-1.0.30001341" sources."chalk-2.4.2" sources."color-convert-1.9.3" sources."color-name-1.1.3" @@ -79182,7 +79272,7 @@ in sources."escape-string-regexp-1.0.5" (sources."filelist-1.0.4" // { dependencies = [ - sources."minimatch-5.0.1" + sources."minimatch-5.1.0" ]; }) sources."fs-extra-5.0.0" @@ -79452,7 +79542,7 @@ in ]; }) sources."y18n-5.0.8" - sources."yargs-17.5.0" + sources."yargs-17.5.1" sources."yargs-parser-21.0.1" sources."ylru-1.3.2" ]; @@ -79477,14 +79567,14 @@ in dependencies = [ sources."@types/glob-7.2.0" sources."@types/minimatch-3.0.5" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."balanced-match-1.0.2" sources."brace-expansion-1.1.11" sources."chromium-pickle-js-0.2.0" sources."commander-5.1.0" sources."concat-map-0.0.1" sources."fs.realpath-1.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."inflight-1.0.6" sources."inherits-2.0.4" sources."minimatch-3.1.2" @@ -79562,7 +79652,7 @@ in }; dependencies = [ sources."browserslist-4.20.3" - sources."caniuse-lite-1.0.30001340" + sources."caniuse-lite-1.0.30001341" sources."electron-to-chromium-1.4.137" sources."escalade-3.1.1" sources."fraction.js-4.2.0" @@ -79591,14 +79681,14 @@ in }; dependencies = [ sources."@tootallnate/once-1.1.2" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/yauzl-2.10.0" sources."agent-base-6.0.2" sources."ansi-escapes-4.3.2" sources."ansi-regex-5.0.1" sources."ansi-styles-4.3.0" sources."ast-types-0.13.4" - (sources."aws-sdk-2.1134.0" // { + (sources."aws-sdk-2.1137.0" // { dependencies = [ sources."uuid-3.3.2" ]; @@ -79671,7 +79761,7 @@ in }) sources."get-stream-5.2.0" sources."get-uri-3.0.2" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."graceful-fs-4.2.10" sources."has-flag-4.0.0" sources."htmlparser2-6.1.0" @@ -79808,7 +79898,7 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -79885,7 +79975,7 @@ in sources."decompress-response-3.3.0" sources."defaults-1.0.3" sources."defer-to-connect-1.1.3" - (sources."del-6.0.0" // { + (sources."del-6.1.0" // { dependencies = [ sources."rimraf-3.0.2" ]; @@ -79910,7 +80000,7 @@ in sources."git-clone-0.1.0" sources."github-slugger-1.4.0" sources."github-url-to-object-4.0.6" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-option-error-1.0.0" sources."glob-parent-5.1.2" sources."globby-11.1.0" @@ -80218,10 +80308,10 @@ in balanceofsatoshis = nodeEnv.buildNodePackage { name = "balanceofsatoshis"; packageName = "balanceofsatoshis"; - version = "12.8.2"; + version = "12.8.4"; src = fetchurl { - url = "https://registry.npmjs.org/balanceofsatoshis/-/balanceofsatoshis-12.8.2.tgz"; - sha512 = "sM6J3VAYyfw0at5FEJY2slgtntKbXv72EANMyi4h7rovasw+AyUvKR2UVbyZtCBzlQNYnqQCJVrm52R5+7qipQ=="; + url = "https://registry.npmjs.org/balanceofsatoshis/-/balanceofsatoshis-12.8.4.tgz"; + sha512 = "Tfe6LCsEhqmTQ+5pRjrfpJ1emxcU/UU1QFGRJcetXKRcbolENwOmBzaUmJHwiBsNQI67UNPCF7j4UjN0jvO12A=="; }; dependencies = [ (sources."@alexbosworth/caporal-1.4.4" // { @@ -80272,7 +80362,7 @@ in sources."@types/express-serve-static-core-4.17.28" sources."@types/long-4.0.2" sources."@types/mime-1.3.2" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/qs-6.9.7" sources."@types/range-parser-1.2.4" sources."@types/request-2.48.8" @@ -80603,17 +80693,17 @@ in sources."type-fest-2.12.0" ]; }) - (sources."ln-service-53.16.0" // { + (sources."ln-service-53.17.0" // { dependencies = [ sources."@grpc/grpc-js-1.6.7" sources."@grpc/proto-loader-0.6.12" - sources."@types/node-17.0.31" + sources."@types/node-17.0.33" sources."bolt09-0.2.3" sources."cookie-0.5.0" sources."express-4.18.1" sources."finalhandler-1.2.0" sources."invoices-2.0.6" - sources."lightning-5.15.0" + sources."lightning-5.16.0" sources."ms-2.1.3" sources."safe-buffer-5.2.1" sources."send-0.18.0" @@ -80950,94 +81040,57 @@ in bash-language-server = nodeEnv.buildNodePackage { name = "bash-language-server"; packageName = "bash-language-server"; - version = "2.1.0"; + version = "3.0.2"; src = fetchurl { - url = "https://registry.npmjs.org/bash-language-server/-/bash-language-server-2.1.0.tgz"; - sha512 = "cmW/ba3Di7Quq9TkfwDrinIlwVZ+W8aT4ctzNZMFK2LgQliKBxW6qZuUhjrvl/Ll863HWjzPo76jGEG5yisonw=="; + url = "https://registry.npmjs.org/bash-language-server/-/bash-language-server-3.0.2.tgz"; + sha512 = "pqlkNrFCLvZXoTuaNNwLrIJ3/syAZ1YZn/4EVLbaSIF0QEG9KytDdumVtEflZurH8AdiFHtbPVHc+rkAbGpxvQ=="; }; dependencies = [ - sources."abab-2.0.6" - sources."acorn-5.7.4" - (sources."acorn-globals-4.3.4" // { - dependencies = [ - sources."acorn-6.4.2" - ]; - }) - sources."acorn-walk-6.2.0" sources."ajv-6.12.6" - sources."array-equal-1.0.0" sources."asn1-0.2.6" sources."assert-plus-1.0.0" - sources."async-limiter-1.0.1" sources."asynckit-0.4.0" sources."aws-sign2-0.7.0" sources."aws4-1.11.0" sources."balanced-match-1.0.2" sources."bcrypt-pbkdf-1.0.2" - sources."brace-expansion-1.1.11" - sources."browser-process-hrtime-1.0.0" + sources."brace-expansion-2.0.1" sources."caseless-0.12.0" sources."combined-stream-1.0.8" - sources."concat-map-0.0.1" sources."core-util-is-1.0.2" - sources."cssom-0.3.8" - sources."cssstyle-1.4.0" sources."dashdash-1.14.1" - (sources."data-urls-1.1.0" // { - dependencies = [ - sources."whatwg-url-7.1.0" - ]; - }) - sources."deep-is-0.1.4" sources."delayed-stream-1.0.0" - sources."domexception-1.0.1" + sources."domino-2.1.6" sources."ecc-jsbn-0.1.2" - sources."escodegen-1.14.3" - sources."esprima-4.0.1" - sources."estraverse-4.3.0" - sources."esutils-2.0.3" sources."extend-3.0.2" sources."extsprintf-1.3.0" sources."fast-deep-equal-3.1.3" sources."fast-json-stable-stringify-2.1.0" - sources."fast-levenshtein-2.0.6" sources."forever-agent-0.6.1" sources."form-data-2.3.3" sources."fs.realpath-1.0.0" sources."fuzzy-search-3.2.1" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-8.0.3" sources."har-schema-2.0.0" sources."har-validator-5.1.5" - sources."html-encoding-sniffer-1.0.2" sources."http-signature-1.2.0" - sources."iconv-lite-0.4.24" sources."inflight-1.0.6" sources."inherits-2.0.4" sources."is-typedarray-1.0.0" sources."isstream-0.1.2" sources."jsbn-0.1.1" - sources."jsdom-11.12.0" sources."json-schema-0.4.0" sources."json-schema-traverse-0.4.1" sources."json-stringify-safe-5.0.1" sources."jsprim-1.4.2" - sources."left-pad-1.3.0" - sources."levn-0.3.0" sources."lodash-4.17.21" - sources."lodash.sortby-4.7.0" sources."mime-db-1.52.0" sources."mime-types-2.1.35" - sources."minimatch-3.1.2" - sources."nwsapi-2.2.0" + sources."minimatch-5.1.0" sources."oauth-sign-0.9.0" sources."once-1.4.0" - sources."optionator-0.8.3" - sources."parse5-4.0.0" - sources."path-is-absolute-1.0.1" sources."performance-now-2.1.0" - sources."pn-1.1.0" - sources."prelude-ls-1.1.2" sources."psl-1.8.0" sources."punycode-2.1.1" sources."qs-6.5.3" @@ -81046,17 +81099,12 @@ in sources."request-promise-native-1.0.9" sources."safe-buffer-5.2.1" sources."safer-buffer-2.1.2" - sources."sax-1.2.4" - sources."source-map-0.6.1" sources."sshpk-1.17.0" sources."stealthy-require-1.1.1" - sources."symbol-tree-3.2.4" sources."tough-cookie-2.5.0" - sources."tr46-1.0.1" sources."tunnel-agent-0.6.0" - sources."turndown-4.0.2" + sources."turndown-7.1.1" sources."tweetnacl-0.14.5" - sources."type-check-0.3.2" sources."uri-js-4.4.1" sources."urijs-1.19.11" sources."uuid-3.4.0" @@ -81066,16 +81114,8 @@ in sources."vscode-languageserver-protocol-3.17.1" sources."vscode-languageserver-textdocument-1.0.4" sources."vscode-languageserver-types-3.17.1" - sources."w3c-hr-time-1.0.2" - sources."web-tree-sitter-0.19.4" - sources."webidl-conversions-4.0.2" - sources."whatwg-encoding-1.0.5" - sources."whatwg-mimetype-2.3.0" - sources."whatwg-url-6.5.0" - sources."word-wrap-1.2.3" + sources."web-tree-sitter-0.20.5" sources."wrappy-1.0.2" - sources."ws-5.2.3" - sources."xml-name-validator-3.0.0" ]; buildInputs = globalBuildInputs; meta = { @@ -81283,7 +81323,7 @@ in version = "3.2.0"; src = fetchurl { url = "https://registry.npmjs.org/bower2nix/-/bower2nix-3.2.0.tgz"; - sha1 = "5a0cabad7d5d5e6c35dbc068719c6c919e903fb5"; + sha512 = "oNHyIWiU5OpUoDCSSRCZQ6JkXyBgtyi+odbv+XSmO6/KCn3B4SRT3/d+QKNj5UQ8KRsrBAI0Ry7CG2OtqrFE1A=="; }; dependencies = [ sources."argparse-1.0.4" @@ -81377,7 +81417,7 @@ in sources."resolve-1.22.0" (sources."rimraf-2.7.1" // { dependencies = [ - sources."glob-7.2.0" + sources."glob-7.2.3" ]; }) sources."semver-5.7.1" @@ -81493,12 +81533,12 @@ in sources."bn.js-4.12.0" ]; }) - sources."es-abstract-1.20.0" + sources."es-abstract-1.20.1" sources."es-to-primitive-1.2.1" sources."events-3.3.0" sources."evp_bytestokey-1.0.3" sources."fast-safe-stringify-2.1.1" - sources."foreach-2.0.6" + sources."for-each-0.3.3" sources."fs.realpath-1.0.0" sources."function-bind-1.1.1" sources."function.prototype.name-1.1.5" @@ -81506,7 +81546,7 @@ in sources."get-assigned-identifiers-1.2.0" sources."get-intrinsic-1.1.1" sources."get-symbol-description-1.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."has-1.0.3" sources."has-bigints-1.0.2" sources."has-property-descriptors-1.0.0" @@ -81541,7 +81581,7 @@ in sources."is-shared-array-buffer-1.0.2" sources."is-string-1.0.7" sources."is-symbol-1.0.4" - sources."is-typed-array-1.1.8" + sources."is-typed-array-1.1.9" sources."is-weakref-1.0.2" sources."isarray-1.0.0" sources."jsonparse-1.3.1" @@ -81638,7 +81678,7 @@ in sources."util-deprecate-1.0.2" sources."vm-browserify-1.1.2" sources."which-boxed-primitive-1.0.2" - sources."which-typed-array-1.1.7" + sources."which-typed-array-1.1.8" sources."wrappy-1.0.2" sources."xtend-4.0.2" ]; @@ -81655,22 +81695,22 @@ in browser-sync = nodeEnv.buildNodePackage { name = "browser-sync"; packageName = "browser-sync"; - version = "2.27.9"; + version = "2.27.10"; src = fetchurl { - url = "https://registry.npmjs.org/browser-sync/-/browser-sync-2.27.9.tgz"; - sha512 = "3zBtggcaZIeU9so4ja9yxk7/CZu9B3DOL6zkxFpzHCHsQmkGBPVXg61jItbeoa+WXgNLnr1sYES/2yQwyEZ2+w=="; + url = "https://registry.npmjs.org/browser-sync/-/browser-sync-2.27.10.tgz"; + sha512 = "xKm+6KJmJu6RuMWWbFkKwOCSqQOxYe3nOrFkKI5Tr/ZzjPxyU3pFShKK3tWnazBo/3lYQzN7fzjixG8fwJh1Xw=="; }; dependencies = [ sources."@socket.io/component-emitter-3.1.0" sources."@types/component-emitter-1.2.11" sources."@types/cookie-0.4.1" sources."@types/cors-2.8.12" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."accepts-1.3.8" sources."ansi-regex-2.1.1" sources."ansi-styles-2.2.1" sources."anymatch-3.1.2" - sources."async-1.5.2" + sources."async-2.6.4" sources."async-each-series-0.1.1" sources."axios-0.21.4" sources."balanced-match-1.0.2" @@ -81679,8 +81719,8 @@ in sources."binary-extensions-2.2.0" sources."brace-expansion-1.1.11" sources."braces-3.0.2" - sources."browser-sync-client-2.27.9" - sources."browser-sync-ui-2.27.9" + sources."browser-sync-client-2.27.10" + sources."browser-sync-ui-2.27.10" sources."bs-recipes-1.3.4" sources."bs-snippet-injector-2.0.1" sources."bytes-3.1.2" @@ -81780,7 +81820,7 @@ in sources."opn-5.3.0" sources."parseurl-1.3.3" sources."picomatch-2.3.1" - sources."portscanner-2.1.1" + sources."portscanner-2.2.0" sources."qs-6.2.3" sources."range-parser-1.2.1" sources."raw-body-2.5.1" @@ -81821,13 +81861,13 @@ in sources."serve-static-1.13.2" sources."server-destroy-1.0.1" sources."setprototypeof-1.2.0" - (sources."socket.io-4.5.0" // { + (sources."socket.io-4.5.1" // { dependencies = [ sources."socket.io-parser-4.0.4" ]; }) sources."socket.io-adapter-2.4.0" - sources."socket.io-client-4.5.0" + sources."socket.io-client-4.5.1" sources."socket.io-parser-4.2.0" sources."statuses-1.3.1" sources."stream-throttle-0.1.3" @@ -81843,6 +81883,7 @@ in sources."tfunk-4.0.0" sources."to-regex-range-5.0.1" sources."toidentifier-1.0.1" + sources."typescript-4.6.4" sources."ua-parser-js-1.0.2" sources."universalify-0.1.2" sources."unpipe-1.0.0" @@ -81858,7 +81899,7 @@ in sources."ws-8.2.3" sources."xmlhttprequest-ssl-2.0.0" sources."y18n-5.0.8" - (sources."yargs-17.5.0" // { + (sources."yargs-17.5.1" // { dependencies = [ sources."yargs-parser-21.0.1" ]; @@ -81886,9 +81927,9 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - sources."@babel/highlight-7.17.9" - sources."@babel/parser-7.17.10" - sources."@babel/types-7.17.10" + sources."@babel/highlight-7.17.12" + sources."@babel/parser-7.17.12" + sources."@babel/types-7.17.12" sources."@kwsites/file-exists-1.1.1" sources."@kwsites/promise-deferred-1.1.1" sources."@types/minimist-1.2.2" @@ -82353,7 +82394,7 @@ in sources."@protobufjs/pool-1.1.0" sources."@protobufjs/utf8-1.1.0" sources."@types/long-4.0.2" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."addr-to-ip-port-1.5.4" sources."airplay-js-0.2.16" sources."ajv-6.12.6" @@ -82372,7 +82413,7 @@ in sources."balanced-match-1.0.2" sources."base64-js-1.5.1" sources."bcrypt-pbkdf-1.0.2" - sources."bencode-2.0.2" + sources."bencode-2.0.3" sources."bep53-range-1.1.1" sources."bitfield-0.1.0" (sources."bittorrent-dht-6.4.2" // { @@ -82475,7 +82516,7 @@ in sources."get-browser-rtc-1.1.0" sources."get-stdin-4.0.1" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."got-1.2.2" sources."graceful-fs-4.2.10" sources."har-schema-2.0.0" @@ -82957,7 +82998,7 @@ in sources."get-stdin-6.0.0" sources."get-stream-3.0.0" sources."get-value-2.0.6" - sources."glob-7.2.0" + sources."glob-7.2.3" (sources."glob-parent-3.1.0" // { dependencies = [ sources."is-glob-3.1.0" @@ -83366,12 +83407,12 @@ in sha512 = "1saDFNPhU3v1GI7KxuIj96oXV3x+QbqF9ZKBS9gRSj61YkZOsQ6L8UsMl1lFBBvKeO2OYc11Kvtrqxss0bIXkQ=="; }; dependencies = [ - sources."@jsii/check-node-1.58.0" - sources."@jsii/spec-1.58.0" + sources."@jsii/check-node-1.59.0" + sources."@jsii/spec-1.59.0" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@types/node-12.20.51" + sources."@types/node-12.20.52" sources."@xmldom/xmldom-0.8.2" sources."ajv-8.11.0" sources."ansi-regex-5.0.1" @@ -83383,11 +83424,11 @@ in sources."camelcase-6.3.0" sources."case-1.6.3" sources."cdk8s-1.5.86" - sources."cdk8s-plus-22-1.0.0-beta.220" + sources."cdk8s-plus-22-1.0.0-beta.222" sources."chalk-4.1.2" sources."cliui-7.0.4" sources."clone-2.1.2" - (sources."codemaker-1.58.0" // { + (sources."codemaker-1.59.0" // { dependencies = [ sources."fs-extra-9.1.0" ]; @@ -83396,8 +83437,8 @@ in sources."color-name-1.1.4" sources."colors-1.4.0" sources."commonmark-0.30.0" - sources."constructs-3.4.7" - sources."date-format-4.0.9" + sources."constructs-3.4.10" + sources."date-format-4.0.10" sources."debug-4.3.4" sources."decamelize-5.0.1" sources."deep-equal-2.0.5" @@ -83407,7 +83448,7 @@ in sources."dot-case-3.0.4" sources."emoji-regex-8.0.0" sources."entities-2.0.3" - sources."es-abstract-1.20.0" + sources."es-abstract-1.20.1" sources."es-get-iterator-1.1.2" sources."es-to-primitive-1.2.1" sources."escalade-3.1.1" @@ -83418,7 +83459,7 @@ in sources."fill-range-7.0.1" sources."find-up-4.1.0" sources."flatted-3.2.5" - sources."foreach-2.0.6" + sources."for-each-0.3.3" (sources."fs-extra-8.1.0" // { dependencies = [ sources."jsonfile-4.0.0" @@ -83457,36 +83498,36 @@ in sources."is-shared-array-buffer-1.0.2" sources."is-string-1.0.7" sources."is-symbol-1.0.4" - sources."is-typed-array-1.1.8" + sources."is-typed-array-1.1.9" sources."is-weakmap-2.0.1" sources."is-weakref-1.0.2" sources."is-weakset-2.0.2" sources."isarray-2.0.5" - (sources."jsii-1.58.0" // { + (sources."jsii-1.59.0" // { dependencies = [ sources."fs-extra-9.1.0" sources."yargs-16.2.0" ]; }) - (sources."jsii-pacmak-1.58.0" // { + (sources."jsii-pacmak-1.59.0" // { dependencies = [ sources."fs-extra-9.1.0" sources."yargs-16.2.0" ]; }) - (sources."jsii-reflect-1.58.0" // { + (sources."jsii-reflect-1.59.0" // { dependencies = [ sources."fs-extra-9.1.0" sources."yargs-16.2.0" ]; }) - (sources."jsii-rosetta-1.58.0" // { + (sources."jsii-rosetta-1.59.0" // { dependencies = [ sources."fs-extra-9.1.0" sources."yargs-16.2.0" ]; }) - (sources."jsii-srcmak-0.1.556" // { + (sources."jsii-srcmak-0.1.563" // { dependencies = [ sources."fs-extra-9.1.0" ]; @@ -83495,9 +83536,9 @@ in sources."json-schema-traverse-1.0.0" sources."json2jsii-0.2.207" sources."jsonfile-6.1.0" - sources."jsonschema-1.4.0" + sources."jsonschema-1.4.1" sources."locate-path-5.0.0" - sources."log4js-6.4.6" + sources."log4js-6.4.7" sources."lower-case-2.0.2" sources."lru-cache-6.0.0" sources."mdurl-1.0.1" @@ -83511,7 +83552,7 @@ in sources."object-is-1.1.5" sources."object-keys-1.1.1" sources."object.assign-4.1.2" - sources."oo-ascii-tree-1.58.0" + sources."oo-ascii-tree-1.59.0" sources."p-limit-2.3.0" sources."p-locate-4.1.0" sources."p-try-2.2.0" @@ -83538,7 +83579,7 @@ in sources."sort-json-2.0.1" sources."spdx-license-list-6.5.0" sources."sscaff-1.2.274" - (sources."streamroller-3.0.8" // { + (sources."streamroller-3.0.9" // { dependencies = [ sources."fs-extra-10.1.0" ]; @@ -83558,7 +83599,7 @@ in sources."which-boxed-primitive-1.0.2" sources."which-collection-1.0.1" sources."which-module-2.0.0" - sources."which-typed-array-1.1.7" + sources."which-typed-array-1.1.8" sources."workerpool-6.2.1" sources."wrap-ansi-7.0.0" sources."xmlbuilder-15.1.1" @@ -83596,19 +83637,21 @@ in }; dependencies = [ sources."@babel/code-frame-7.16.7" - sources."@babel/generator-7.17.10" + sources."@babel/generator-7.17.12" sources."@babel/helper-validator-identifier-7.16.7" - sources."@babel/highlight-7.17.9" - sources."@babel/parser-7.17.10" + sources."@babel/highlight-7.17.12" + sources."@babel/parser-7.17.12" sources."@babel/template-7.16.7" - sources."@babel/types-7.17.10" + sources."@babel/types-7.17.12" sources."@cdktf/hcl2cdk-0.10.4" sources."@cdktf/hcl2json-0.10.4" sources."@cdktf/provider-generator-0.10.4" - sources."@jridgewell/gen-mapping-0.1.1" + sources."@jridgewell/gen-mapping-0.3.1" + sources."@jridgewell/resolve-uri-3.0.7" sources."@jridgewell/set-array-1.1.1" sources."@jridgewell/sourcemap-codec-1.4.13" - (sources."@jsii/check-node-1.58.0" // { + sources."@jridgewell/trace-mapping-0.3.13" + (sources."@jsii/check-node-1.59.0" // { dependencies = [ sources."ansi-styles-4.3.0" sources."chalk-4.1.2" @@ -83618,11 +83661,11 @@ in sources."supports-color-7.2.0" ]; }) - sources."@jsii/spec-1.58.0" + sources."@jsii/spec-1.59.0" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/node-fetch-2.6.1" sources."@types/yargs-17.0.10" sources."@types/yargs-parser-21.0.0" @@ -83653,9 +83696,9 @@ in sources."combined-stream-1.0.8" sources."commonmark-0.30.0" sources."concat-map-0.0.1" - sources."constructs-10.1.7" + sources."constructs-10.1.10" sources."cross-spawn-7.0.3" - sources."date-format-4.0.9" + sources."date-format-4.0.10" sources."debug-4.3.4" sources."decamelize-1.2.0" sources."deep-equal-2.0.5" @@ -83665,7 +83708,7 @@ in sources."detect-newline-2.1.0" sources."emoji-regex-8.0.0" sources."entities-2.0.3" - sources."es-abstract-1.20.0" + sources."es-abstract-1.20.1" sources."es-get-iterator-1.1.2" sources."es-to-primitive-1.2.1" sources."escalade-3.1.1" @@ -83677,7 +83720,7 @@ in sources."fill-range-7.0.1" sources."find-up-4.1.0" sources."flatted-3.2.5" - sources."foreach-2.0.6" + sources."for-each-0.3.3" sources."form-data-3.0.1" sources."fs-extra-8.1.0" sources."fs.realpath-1.0.0" @@ -83723,7 +83766,7 @@ in sources."is-shared-array-buffer-1.0.2" sources."is-string-1.0.7" sources."is-symbol-1.0.4" - sources."is-typed-array-1.1.8" + sources."is-typed-array-1.1.9" sources."is-valid-domain-0.1.6" sources."is-weakmap-2.0.1" sources."is-weakref-1.0.2" @@ -83732,7 +83775,7 @@ in sources."isexe-2.0.0" sources."js-tokens-4.0.0" sources."jsesc-2.5.2" - (sources."jsii-1.58.0" // { + (sources."jsii-1.59.0" // { dependencies = [ sources."ansi-styles-4.3.0" sources."chalk-4.1.2" @@ -83750,11 +83793,11 @@ in sources."yargs-parser-20.2.9" ]; }) - (sources."jsii-pacmak-1.58.0" // { + (sources."jsii-pacmak-1.59.0" // { dependencies = [ sources."ansi-styles-4.3.0" sources."cliui-7.0.4" - sources."codemaker-1.58.0" + sources."codemaker-1.59.0" sources."color-convert-2.0.1" sources."color-name-1.1.4" sources."decamelize-5.0.1" @@ -83768,7 +83811,7 @@ in sources."yargs-parser-20.2.9" ]; }) - (sources."jsii-reflect-1.58.0" // { + (sources."jsii-reflect-1.59.0" // { dependencies = [ sources."ansi-styles-4.3.0" sources."chalk-4.1.2" @@ -83786,7 +83829,7 @@ in sources."yargs-parser-20.2.9" ]; }) - (sources."jsii-rosetta-1.58.0" // { + (sources."jsii-rosetta-1.59.0" // { dependencies = [ sources."ansi-styles-4.3.0" sources."cliui-7.0.4" @@ -83801,7 +83844,7 @@ in sources."yargs-parser-20.2.9" ]; }) - (sources."jsii-srcmak-0.1.556" // { + (sources."jsii-srcmak-0.1.563" // { dependencies = [ sources."fs-extra-9.1.0" sources."jsonfile-6.1.0" @@ -83810,17 +83853,17 @@ in ]; }) sources."jsonfile-4.0.0" - sources."jsonschema-1.4.0" + sources."jsonschema-1.4.1" sources."locate-path-5.0.0" sources."lodash.isequal-4.5.0" - sources."log4js-6.4.6" + sources."log4js-6.4.7" sources."lru-cache-6.0.0" sources."mdurl-1.0.1" sources."merge2-1.4.1" sources."micromatch-4.0.5" sources."mime-db-1.52.0" sources."mime-types-2.1.35" - (sources."minimatch-5.0.1" // { + (sources."minimatch-5.1.0" // { dependencies = [ sources."brace-expansion-2.0.1" ]; @@ -83836,7 +83879,7 @@ in sources."object.assign-4.1.2" sources."obliterator-2.0.4" sources."once-1.4.0" - sources."oo-ascii-tree-1.58.0" + sources."oo-ascii-tree-1.59.0" sources."p-limit-2.3.0" sources."p-locate-4.1.0" sources."p-try-2.2.0" @@ -83867,7 +83910,7 @@ in sources."side-channel-1.0.4" sources."sort-json-2.0.1" sources."spdx-license-list-6.5.0" - (sources."streamroller-3.0.8" // { + (sources."streamroller-3.0.9" // { dependencies = [ sources."fs-extra-10.1.0" sources."jsonfile-6.1.0" @@ -83893,7 +83936,7 @@ in sources."which-boxed-primitive-1.0.2" sources."which-collection-1.0.1" sources."which-module-2.0.0" - sources."which-typed-array-1.1.7" + sources."which-typed-array-1.1.8" sources."workerpool-6.2.1" (sources."wrap-ansi-6.2.0" // { dependencies = [ @@ -83906,7 +83949,7 @@ in sources."xmlbuilder-15.1.1" sources."y18n-4.0.3" sources."yallist-4.0.0" - (sources."yargs-17.5.0" // { + (sources."yargs-17.5.1" // { dependencies = [ sources."ansi-styles-4.3.0" sources."cliui-7.0.4" @@ -83955,7 +83998,7 @@ in sources."fill-range-7.0.1" sources."fs.realpath-1.0.0" sources."fsevents-2.3.2" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."inflight-1.0.6" sources."inherits-2.0.4" @@ -83994,7 +84037,7 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - sources."@babel/highlight-7.17.9" + sources."@babel/highlight-7.17.12" sources."@types/minimist-1.2.2" sources."@types/normalize-package-data-2.4.1" sources."ansi-styles-3.2.1" @@ -84265,10 +84308,10 @@ in coc-explorer = nodeEnv.buildNodePackage { name = "coc-explorer"; packageName = "coc-explorer"; - version = "0.23.0"; + version = "0.24.1"; src = fetchurl { - url = "https://registry.npmjs.org/coc-explorer/-/coc-explorer-0.23.0.tgz"; - sha512 = "o7Vsc2G7VZFBNIqEUEvn5EoglRchSQzfsy6D/bsR6iBKLOia1twR5McnkkyW43yFJ7hmY7Ybw2f6gmJcukud0g=="; + url = "https://registry.npmjs.org/coc-explorer/-/coc-explorer-0.24.1.tgz"; + sha512 = "wan+Gsg/+dvKdgOECq/+9ihYIFreYiRW9fSm0j52Azpquoxy/jduFTCQbvBYIBG30CJY7qULmwHojDaXPU2cqg=="; }; dependencies = [ sources."@sindresorhus/df-3.1.1" @@ -84286,7 +84329,7 @@ in sources."execa-2.1.0" sources."fs.realpath-1.0.0" sources."get-stream-5.2.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."globby-7.1.1" sources."ignore-3.3.10" sources."indent-string-4.0.0" @@ -84347,10 +84390,10 @@ in coc-flutter = nodeEnv.buildNodePackage { name = "coc-flutter"; packageName = "coc-flutter"; - version = "1.9.7"; + version = "1.9.8"; src = fetchurl { - url = "https://registry.npmjs.org/coc-flutter/-/coc-flutter-1.9.7.tgz"; - sha512 = "12tXdF76vIOKhswubUNsd69jva2QxVStJuKSL8Ul7qH664MH3Pk1H6h26V+xu+vAeJKLZYp27MFZQmlpnd82IQ=="; + url = "https://registry.npmjs.org/coc-flutter/-/coc-flutter-1.9.8.tgz"; + sha512 = "oT61zphwE2jS5Jp0/LHt6H+9oJF/Az1bZVy/lHlVL41hBaWAPbAl6+JASEiz+VLABl27z1PAzY79gIbuHyfFTQ=="; }; buildInputs = globalBuildInputs; meta = { @@ -84462,10 +84505,10 @@ in coc-imselect = nodeEnv.buildNodePackage { name = "coc-imselect"; packageName = "coc-imselect"; - version = "0.0.13"; + version = "0.0.14"; src = fetchurl { - url = "https://registry.npmjs.org/coc-imselect/-/coc-imselect-0.0.13.tgz"; - sha512 = "5hL7FmrLILl6PwZDUndOfHqfMjAl31pvB6YifmnZJO/ht4J3lFLCWxkiyXt5PRQbrHKLGnPT7sySTKxF8X303g=="; + url = "https://registry.npmjs.org/coc-imselect/-/coc-imselect-0.0.14.tgz"; + sha512 = "jiUFPvnBqeTJPXEaNyn/ySgueSDFV0H+sMzpHIG584UwYYtsOYddtbCx3WLkwk5YrJ41FsaQH4CQxvdU0DGuOw=="; }; buildInputs = globalBuildInputs; meta = { @@ -84515,10 +84558,10 @@ in coc-json = nodeEnv.buildNodePackage { name = "coc-json"; packageName = "coc-json"; - version = "1.4.1"; + version = "1.4.2"; src = fetchurl { - url = "https://registry.npmjs.org/coc-json/-/coc-json-1.4.1.tgz"; - sha512 = "yLHeA46XFmglKiGJSiRgCcEIGMFD6iYIN/xSSXHJiUoW8kMHkoIdXxMjzE1zCaogH8uVa26mrfNYw90UyhSD4w=="; + url = "https://registry.npmjs.org/coc-json/-/coc-json-1.4.2.tgz"; + sha512 = "o39cHt6BxsIEaAcd9bC8Smgej0mtYBWXG2vORGuBFFPylTqRzu96nUwlzVh+cPrPfpmrM5tv3LEtXo/urFNhSA=="; }; buildInputs = globalBuildInputs; meta = { @@ -84603,14 +84646,14 @@ in sources."which-1.3.1" ]; }) - sources."date-format-4.0.9" + sources."date-format-4.0.10" sources."debounce-1.2.1" sources."debug-4.3.4" sources."deep-extend-0.6.0" sources."define-properties-1.1.4" sources."duplexer2-0.1.4" sources."end-of-stream-1.4.4" - sources."es-abstract-1.20.0" + sources."es-abstract-1.20.1" sources."es-to-primitive-1.2.1" sources."event-lite-0.1.2" sources."execa-1.0.0" @@ -84634,7 +84677,7 @@ in sources."get-intrinsic-1.1.1" sources."get-stream-4.1.0" sources."get-symbol-description-1.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."graceful-fs-4.2.10" sources."has-1.0.3" sources."has-bigints-1.0.2" @@ -84675,7 +84718,7 @@ in ]; }) sources."lodash-4.17.21" - sources."log4js-6.4.6" + sources."log4js-6.4.7" sources."lru-cache-6.0.0" sources."metals-languageclient-0.4.2" sources."minimatch-3.1.2" @@ -84726,7 +84769,7 @@ in sources."shell-quote-1.7.3" sources."side-channel-1.0.4" sources."signal-exit-3.0.7" - sources."streamroller-3.0.8" + sources."streamroller-3.0.9" sources."string.prototype.trimend-1.0.5" sources."string.prototype.trimstart-1.0.5" (sources."string_decoder-1.1.1" // { @@ -84818,7 +84861,7 @@ in sha512 = "Jc5YOiN2vBrsD7Mcm21t5qwu0ltvtRhm9KAOWhl8fnABlOlvxiceqdtY5p2rnyW460PI5FD/iFSQTTovQuveWg=="; }; dependencies = [ - sources."pyright-1.1.246" + sources."pyright-1.1.247" ]; buildInputs = globalBuildInputs; meta = { @@ -84892,10 +84935,10 @@ in coc-rust-analyzer = nodeEnv.buildNodePackage { name = "coc-rust-analyzer"; packageName = "coc-rust-analyzer"; - version = "0.62.0"; + version = "0.62.1"; src = fetchurl { - url = "https://registry.npmjs.org/coc-rust-analyzer/-/coc-rust-analyzer-0.62.0.tgz"; - sha512 = "rLvqkBL26cSgWtmfJMR9byRAyAIRZRQB0dx/tUqBQP34U0xkkyqlo2HirQ5fqlpnziUh9U4cYTItthRALe8vxA=="; + url = "https://registry.npmjs.org/coc-rust-analyzer/-/coc-rust-analyzer-0.62.1.tgz"; + sha512 = "lxFGzxnrvQlw2o4EXXetQVKJFBw+HkILfWezc5KNLE3RkcLmMtgJhkt+VFmCGesgd4sUEUH6XBUi1Jf/XmGIaA=="; }; buildInputs = globalBuildInputs; meta = { @@ -84928,10 +84971,10 @@ in coc-snippets = nodeEnv.buildNodePackage { name = "coc-snippets"; packageName = "coc-snippets"; - version = "3.0.9"; + version = "3.0.10"; src = fetchurl { - url = "https://registry.npmjs.org/coc-snippets/-/coc-snippets-3.0.9.tgz"; - sha512 = "BrQfCIW4kOWbNB0+RTXPs3pT6tqYI8xqrD7kbKBUaP0e7pFrQYCvf7SHCmT7M3TeIcfMCuv0bwiuHEoWejj1MQ=="; + url = "https://registry.npmjs.org/coc-snippets/-/coc-snippets-3.0.10.tgz"; + sha512 = "TOuyNXXKlYy/gD35Tu2aEWQ2w82PRnaEFwE4Xkv2teEEWLXRQ0CVNkjR1V1zP9hptuUj7lQl1yXZHeebS3ro3w=="; }; buildInputs = globalBuildInputs; meta = { @@ -84971,28 +85014,32 @@ in sources."@ampproject/remapping-2.2.0" sources."@babel/code-frame-7.16.7" sources."@babel/compat-data-7.17.10" - sources."@babel/core-7.17.10" - sources."@babel/generator-7.17.10" + sources."@babel/core-7.17.12" + (sources."@babel/generator-7.17.12" // { + dependencies = [ + sources."@jridgewell/gen-mapping-0.3.1" + ]; + }) sources."@babel/helper-compilation-targets-7.17.10" sources."@babel/helper-environment-visitor-7.16.7" sources."@babel/helper-function-name-7.17.9" sources."@babel/helper-hoist-variables-7.16.7" sources."@babel/helper-module-imports-7.16.7" - sources."@babel/helper-module-transforms-7.17.7" + sources."@babel/helper-module-transforms-7.17.12" sources."@babel/helper-simple-access-7.17.7" sources."@babel/helper-split-export-declaration-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" sources."@babel/helper-validator-option-7.16.7" sources."@babel/helpers-7.17.9" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."chalk-2.4.2" ]; }) - sources."@babel/parser-7.17.10" + sources."@babel/parser-7.17.12" sources."@babel/template-7.16.7" - sources."@babel/traverse-7.17.10" - sources."@babel/types-7.17.10" + sources."@babel/traverse-7.17.12" + sources."@babel/types-7.17.12" sources."@jridgewell/gen-mapping-0.1.1" sources."@jridgewell/resolve-uri-3.0.7" sources."@jridgewell/set-array-1.1.1" @@ -85031,7 +85078,7 @@ in sources."callsites-3.1.0" sources."camelcase-5.3.1" sources."camelcase-keys-6.2.2" - sources."caniuse-lite-1.0.30001340" + sources."caniuse-lite-1.0.30001341" (sources."chalk-4.1.2" // { dependencies = [ sources."ansi-styles-4.3.0" @@ -85090,7 +85137,7 @@ in sources."function-bind-1.1.1" sources."gensync-1.0.0-beta.2" sources."get-stdin-8.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."global-modules-2.0.0" sources."global-prefix-3.0.0" @@ -85351,7 +85398,7 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - sources."@babel/highlight-7.17.9" + sources."@babel/highlight-7.17.12" sources."ansi-styles-3.2.1" sources."argparse-1.0.10" sources."balanced-match-1.0.2" @@ -85367,7 +85414,7 @@ in sources."esprima-4.0.1" sources."fs.realpath-1.0.0" sources."function-bind-1.1.1" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."has-1.0.3" sources."has-flag-3.0.0" sources."inflight-1.0.6" @@ -85438,10 +85485,10 @@ in coc-tsserver = nodeEnv.buildNodePackage { name = "coc-tsserver"; packageName = "coc-tsserver"; - version = "1.10.3"; + version = "1.10.4"; src = fetchurl { - url = "https://registry.npmjs.org/coc-tsserver/-/coc-tsserver-1.10.3.tgz"; - sha512 = "SwjYCJ2JGHKdYo1u9qoZbZMriZuKRiiYFiNme+P7tOwS8P8zDGjfcRk9i2dKbOI+aaw53lBWXHTnEWT+EwHIyw=="; + url = "https://registry.npmjs.org/coc-tsserver/-/coc-tsserver-1.10.4.tgz"; + sha512 = "SiihwYjslqjI+yU1lvtuzmU8mMHxbcMo5Bufmzu+VgvT7z838vrCBxGI2AoA/jmdyKlKePdbXDukpLQWsug78A=="; }; dependencies = [ sources."typescript-4.6.4" @@ -85485,7 +85532,7 @@ in dependencies = [ sources."@babel/code-frame-7.12.11" sources."@babel/helper-validator-identifier-7.16.7" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."chalk-2.4.2" sources."escape-string-regexp-1.0.5" @@ -85497,7 +85544,7 @@ in sources."acorn-7.4.1" sources."acorn-jsx-5.3.2" sources."ajv-6.12.6" - sources."ansi-colors-4.1.1" + sources."ansi-colors-4.1.3" sources."ansi-regex-5.0.1" sources."ansi-styles-3.2.1" sources."argparse-1.0.10" @@ -85570,7 +85617,7 @@ in sources."function-bind-1.1.1" sources."functional-red-black-tree-1.0.1" sources."get-intrinsic-1.1.1" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."globals-13.15.0" sources."has-1.0.3" @@ -85837,7 +85884,7 @@ in sources."get-proxy-2.1.0" sources."get-stream-3.0.0" sources."git-clone-0.1.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."got-6.7.1" sources."graceful-fs-4.2.10" sources."has-flag-3.0.0" @@ -86010,10 +86057,10 @@ in concurrently = nodeEnv.buildNodePackage { name = "concurrently"; packageName = "concurrently"; - version = "7.1.0"; + version = "7.2.0"; src = fetchurl { - url = "https://registry.npmjs.org/concurrently/-/concurrently-7.1.0.tgz"; - sha512 = "Bz0tMlYKZRUDqJlNiF/OImojMB9ruKUz6GCfmhFnSapXgPe+3xzY4byqoKG9tUZ7L2PGEUjfLPOLfIX3labnmw=="; + url = "https://registry.npmjs.org/concurrently/-/concurrently-7.2.0.tgz"; + sha512 = "4KIVY5HopDRhN3ndAgfFOLsMk1PZUPgghlgTMZ5Pb5aTrqYg86RcZaIZC2Cz+qpZ9DsX36WHGjvWnXPqdnblhw=="; }; dependencies = [ sources."ansi-regex-5.0.1" @@ -86035,6 +86082,7 @@ in sources."lodash-4.17.21" sources."require-directory-2.1.1" sources."rxjs-6.6.7" + sources."shell-quote-1.7.3" sources."spawn-command-0.0.2" sources."string-width-4.2.3" sources."strip-ansi-6.0.1" @@ -86043,8 +86091,8 @@ in sources."tslib-1.14.1" sources."wrap-ansi-7.0.0" sources."y18n-5.0.8" - sources."yargs-16.2.0" - sources."yargs-parser-20.2.9" + sources."yargs-17.5.1" + sources."yargs-parser-21.0.1" ]; buildInputs = globalBuildInputs; meta = { @@ -86125,7 +86173,7 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - sources."@babel/highlight-7.17.9" + sources."@babel/highlight-7.17.12" sources."@hutson/parse-repository-url-3.0.2" sources."@types/minimist-1.2.2" sources."@types/normalize-package-data-2.4.1" @@ -86576,7 +86624,7 @@ in sources."get-intrinsic-1.1.1" sources."get-stream-6.0.1" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."global-dirs-3.0.0" sources."globby-11.1.0" @@ -86963,7 +87011,7 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - sources."@babel/highlight-7.17.9" + sources."@babel/highlight-7.17.12" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" @@ -87044,7 +87092,7 @@ in sources."p-finally-1.0.0" sources."p-limit-3.1.0" sources."p-locate-5.0.0" - sources."p-map-5.3.0" + sources."p-map-5.4.0" sources."p-timeout-3.2.0" sources."parse-json-5.2.0" sources."path-exists-4.0.0" @@ -87102,7 +87150,7 @@ in sources."@cycle/run-3.4.0" sources."@cycle/time-0.10.1" sources."@types/cookiejar-2.1.2" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/superagent-3.8.2" sources."ansi-escapes-3.2.0" sources."ansi-regex-2.1.1" @@ -87280,7 +87328,7 @@ in sources."fs.realpath-1.0.0" sources."fstream-1.0.12" sources."fstream-ignore-1.0.5" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."graceful-fs-4.2.10" sources."has-flag-4.0.0" sources."hyperquest-2.1.3" @@ -87367,15 +87415,15 @@ in cspell = nodeEnv.buildNodePackage { name = "cspell"; packageName = "cspell"; - version = "5.20.0"; + version = "5.21.0"; src = fetchurl { - url = "https://registry.npmjs.org/cspell/-/cspell-5.20.0.tgz"; - sha512 = "lXAS14ZlfJfOI3FgoAAfyl/AlTB8T+ayHmKrHxwuRRUvN4IBT4y8d7tdjWDj7/bsM4u5M5WrlAXg6vXH3Fg5bA=="; + url = "https://registry.npmjs.org/cspell/-/cspell-5.21.0.tgz"; + sha512 = "MuEB6kKBgGaOAkG9Sp3Hen1zdctgLJ4sNms/m+djFl8unc+iK8p71qyYnOZ4aBAXtTXQNMF1xEXOt0L3JEj71g=="; }; dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -87385,33 +87433,33 @@ in sources."supports-color-5.5.0" ]; }) - sources."@cspell/cspell-bundled-dicts-5.20.0" - sources."@cspell/cspell-pipe-5.20.0" - sources."@cspell/cspell-types-5.20.0" + sources."@cspell/cspell-bundled-dicts-5.21.0" + sources."@cspell/cspell-pipe-5.21.0" + sources."@cspell/cspell-types-5.21.0" sources."@cspell/dict-ada-2.0.0" sources."@cspell/dict-aws-2.0.0" sources."@cspell/dict-bash-2.0.2" sources."@cspell/dict-companies-2.0.4" - sources."@cspell/dict-cpp-2.0.3" + sources."@cspell/dict-cpp-3.0.1" sources."@cspell/dict-cryptocurrencies-2.0.0" - sources."@cspell/dict-csharp-2.0.1" + sources."@cspell/dict-csharp-3.0.1" sources."@cspell/dict-css-2.0.0" sources."@cspell/dict-dart-1.1.0" sources."@cspell/dict-django-2.0.0" sources."@cspell/dict-dotnet-2.0.1" sources."@cspell/dict-elixir-2.0.1" sources."@cspell/dict-en-gb-1.1.33" - sources."@cspell/dict-en_us-2.2.4" + sources."@cspell/dict-en_us-2.2.5" sources."@cspell/dict-filetypes-2.0.1" sources."@cspell/dict-fonts-2.0.0" sources."@cspell/dict-fullstack-2.0.5" sources."@cspell/dict-git-1.0.1" - sources."@cspell/dict-golang-2.0.0" + sources."@cspell/dict-golang-3.0.1" sources."@cspell/dict-haskell-2.0.0" sources."@cspell/dict-html-3.0.1" - sources."@cspell/dict-html-symbol-entities-2.0.0" + sources."@cspell/dict-html-symbol-entities-3.0.0" sources."@cspell/dict-java-2.0.0" - sources."@cspell/dict-latex-2.0.0" + sources."@cspell/dict-latex-2.0.2" sources."@cspell/dict-lorem-ipsum-2.0.0" sources."@cspell/dict-lua-2.0.0" sources."@cspell/dict-node-2.0.1" @@ -87424,7 +87472,7 @@ in sources."@cspell/dict-ruby-2.0.1" sources."@cspell/dict-rust-2.0.0" sources."@cspell/dict-scala-2.0.0" - sources."@cspell/dict-software-terms-2.1.5" + sources."@cspell/dict-software-terms-2.1.7" sources."@cspell/dict-swift-1.0.2" sources."@cspell/dict-typescript-2.0.0" sources."@cspell/dict-vue-2.0.2" @@ -87447,11 +87495,11 @@ in sources."core-util-is-1.0.3" sources."cosmiconfig-7.0.1" sources."crypto-random-string-2.0.0" - sources."cspell-gitignore-5.20.0" - sources."cspell-glob-5.20.0" - sources."cspell-io-5.20.0" - sources."cspell-lib-5.20.0" - sources."cspell-trie-lib-5.20.0" + sources."cspell-gitignore-5.21.0" + sources."cspell-glob-5.21.0" + sources."cspell-io-5.21.0" + sources."cspell-lib-5.21.0" + sources."cspell-trie-lib-5.21.0" sources."dot-prop-5.3.0" sources."error-ex-1.3.2" sources."escape-string-regexp-1.0.5" @@ -87467,10 +87515,10 @@ in sources."fs.realpath-1.0.0" sources."gensequence-3.1.1" sources."get-stdin-8.0.0" - (sources."glob-8.0.2" // { + (sources."glob-8.0.3" // { dependencies = [ sources."brace-expansion-2.0.1" - sources."minimatch-5.0.1" + sources."minimatch-5.1.0" ]; }) sources."global-dirs-0.1.1" @@ -87518,7 +87566,7 @@ in sources."resolve-global-1.0.0" (sources."rimraf-3.0.2" // { dependencies = [ - sources."glob-7.2.0" + sources."glob-7.2.3" ]; }) sources."semver-7.3.7" @@ -87805,7 +87853,7 @@ in sources."get-stream-3.0.0" sources."get-value-2.0.6" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."global-4.4.0" sources."global-dirs-0.1.1" sources."got-6.7.1" @@ -87913,7 +87961,7 @@ in sources."mkdirp-classic-0.5.3" sources."ms-2.0.0" sources."multi-random-access-2.1.1" - sources."multicast-dns-7.2.4" + sources."multicast-dns-7.2.5" sources."mute-stream-0.0.8" sources."mutexify-1.4.0" sources."nan-2.15.0" @@ -88218,13 +88266,17 @@ in sources."@ampproject/remapping-2.2.0" sources."@babel/code-frame-7.16.7" sources."@babel/compat-data-7.17.10" - sources."@babel/core-7.17.10" - sources."@babel/generator-7.17.10" + sources."@babel/core-7.17.12" + (sources."@babel/generator-7.17.12" // { + dependencies = [ + sources."@jridgewell/gen-mapping-0.3.1" + ]; + }) sources."@babel/helper-annotate-as-pure-7.16.7" sources."@babel/helper-builder-binary-assignment-operator-visitor-7.16.7" sources."@babel/helper-compilation-targets-7.17.10" - sources."@babel/helper-create-class-features-plugin-7.17.9" - sources."@babel/helper-create-regexp-features-plugin-7.17.0" + sources."@babel/helper-create-class-features-plugin-7.17.12" + sources."@babel/helper-create-regexp-features-plugin-7.17.12" sources."@babel/helper-define-polyfill-provider-0.3.1" sources."@babel/helper-environment-visitor-7.16.7" sources."@babel/helper-explode-assignable-expression-7.16.7" @@ -88232,9 +88284,9 @@ in sources."@babel/helper-hoist-variables-7.16.7" sources."@babel/helper-member-expression-to-functions-7.17.7" sources."@babel/helper-module-imports-7.16.7" - sources."@babel/helper-module-transforms-7.17.7" + sources."@babel/helper-module-transforms-7.17.12" sources."@babel/helper-optimise-call-expression-7.16.7" - sources."@babel/helper-plugin-utils-7.16.7" + sources."@babel/helper-plugin-utils-7.17.12" sources."@babel/helper-remap-async-to-generator-7.16.8" sources."@babel/helper-replace-supers-7.16.7" sources."@babel/helper-simple-access-7.17.7" @@ -88244,32 +88296,32 @@ in sources."@babel/helper-validator-option-7.16.7" sources."@babel/helper-wrap-function-7.16.8" sources."@babel/helpers-7.17.9" - sources."@babel/highlight-7.17.9" - sources."@babel/parser-7.17.10" - sources."@babel/plugin-bugfix-safari-id-destructuring-collision-in-function-expression-7.16.7" - sources."@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.16.7" - sources."@babel/plugin-proposal-async-generator-functions-7.16.8" - sources."@babel/plugin-proposal-class-properties-7.16.7" - sources."@babel/plugin-proposal-class-static-block-7.17.6" + sources."@babel/highlight-7.17.12" + sources."@babel/parser-7.17.12" + sources."@babel/plugin-bugfix-safari-id-destructuring-collision-in-function-expression-7.17.12" + sources."@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.17.12" + sources."@babel/plugin-proposal-async-generator-functions-7.17.12" + sources."@babel/plugin-proposal-class-properties-7.17.12" + sources."@babel/plugin-proposal-class-static-block-7.17.12" sources."@babel/plugin-proposal-dynamic-import-7.16.7" - sources."@babel/plugin-proposal-export-namespace-from-7.16.7" - sources."@babel/plugin-proposal-json-strings-7.16.7" - sources."@babel/plugin-proposal-logical-assignment-operators-7.16.7" - sources."@babel/plugin-proposal-nullish-coalescing-operator-7.16.7" + sources."@babel/plugin-proposal-export-namespace-from-7.17.12" + sources."@babel/plugin-proposal-json-strings-7.17.12" + sources."@babel/plugin-proposal-logical-assignment-operators-7.17.12" + sources."@babel/plugin-proposal-nullish-coalescing-operator-7.17.12" sources."@babel/plugin-proposal-numeric-separator-7.16.7" - sources."@babel/plugin-proposal-object-rest-spread-7.17.3" + sources."@babel/plugin-proposal-object-rest-spread-7.17.12" sources."@babel/plugin-proposal-optional-catch-binding-7.16.7" - sources."@babel/plugin-proposal-optional-chaining-7.16.7" - sources."@babel/plugin-proposal-private-methods-7.16.11" - sources."@babel/plugin-proposal-private-property-in-object-7.16.7" - sources."@babel/plugin-proposal-unicode-property-regex-7.16.7" + sources."@babel/plugin-proposal-optional-chaining-7.17.12" + sources."@babel/plugin-proposal-private-methods-7.17.12" + sources."@babel/plugin-proposal-private-property-in-object-7.17.12" + sources."@babel/plugin-proposal-unicode-property-regex-7.17.12" sources."@babel/plugin-syntax-async-generators-7.8.4" sources."@babel/plugin-syntax-class-properties-7.12.13" sources."@babel/plugin-syntax-class-static-block-7.14.5" sources."@babel/plugin-syntax-dynamic-import-7.8.3" sources."@babel/plugin-syntax-export-namespace-from-7.8.3" sources."@babel/plugin-syntax-json-strings-7.8.3" - sources."@babel/plugin-syntax-jsx-7.16.7" + sources."@babel/plugin-syntax-jsx-7.17.12" sources."@babel/plugin-syntax-logical-assignment-operators-7.10.4" sources."@babel/plugin-syntax-nullish-coalescing-operator-7.8.3" sources."@babel/plugin-syntax-numeric-separator-7.10.4" @@ -88278,50 +88330,50 @@ in sources."@babel/plugin-syntax-optional-chaining-7.8.3" sources."@babel/plugin-syntax-private-property-in-object-7.14.5" sources."@babel/plugin-syntax-top-level-await-7.14.5" - sources."@babel/plugin-transform-arrow-functions-7.16.7" - sources."@babel/plugin-transform-async-to-generator-7.16.8" + sources."@babel/plugin-transform-arrow-functions-7.17.12" + sources."@babel/plugin-transform-async-to-generator-7.17.12" sources."@babel/plugin-transform-block-scoped-functions-7.16.7" - sources."@babel/plugin-transform-block-scoping-7.16.7" - sources."@babel/plugin-transform-classes-7.16.7" - sources."@babel/plugin-transform-computed-properties-7.16.7" - sources."@babel/plugin-transform-destructuring-7.17.7" + sources."@babel/plugin-transform-block-scoping-7.17.12" + sources."@babel/plugin-transform-classes-7.17.12" + sources."@babel/plugin-transform-computed-properties-7.17.12" + sources."@babel/plugin-transform-destructuring-7.17.12" sources."@babel/plugin-transform-dotall-regex-7.16.7" - sources."@babel/plugin-transform-duplicate-keys-7.16.7" + sources."@babel/plugin-transform-duplicate-keys-7.17.12" sources."@babel/plugin-transform-exponentiation-operator-7.16.7" - sources."@babel/plugin-transform-for-of-7.16.7" + sources."@babel/plugin-transform-for-of-7.17.12" sources."@babel/plugin-transform-function-name-7.16.7" - sources."@babel/plugin-transform-literals-7.16.7" + sources."@babel/plugin-transform-literals-7.17.12" sources."@babel/plugin-transform-member-expression-literals-7.16.7" - sources."@babel/plugin-transform-modules-amd-7.16.7" - sources."@babel/plugin-transform-modules-commonjs-7.17.9" - sources."@babel/plugin-transform-modules-systemjs-7.17.8" - sources."@babel/plugin-transform-modules-umd-7.16.7" - sources."@babel/plugin-transform-named-capturing-groups-regex-7.17.10" - sources."@babel/plugin-transform-new-target-7.16.7" + sources."@babel/plugin-transform-modules-amd-7.17.12" + sources."@babel/plugin-transform-modules-commonjs-7.17.12" + sources."@babel/plugin-transform-modules-systemjs-7.17.12" + sources."@babel/plugin-transform-modules-umd-7.17.12" + sources."@babel/plugin-transform-named-capturing-groups-regex-7.17.12" + sources."@babel/plugin-transform-new-target-7.17.12" sources."@babel/plugin-transform-object-super-7.16.7" - sources."@babel/plugin-transform-parameters-7.16.7" + sources."@babel/plugin-transform-parameters-7.17.12" sources."@babel/plugin-transform-property-literals-7.16.7" sources."@babel/plugin-transform-react-display-name-7.16.7" - sources."@babel/plugin-transform-react-jsx-7.17.3" + sources."@babel/plugin-transform-react-jsx-7.17.12" sources."@babel/plugin-transform-react-jsx-development-7.16.7" sources."@babel/plugin-transform-react-pure-annotations-7.16.7" sources."@babel/plugin-transform-regenerator-7.17.9" - sources."@babel/plugin-transform-reserved-words-7.16.7" + sources."@babel/plugin-transform-reserved-words-7.17.12" sources."@babel/plugin-transform-shorthand-properties-7.16.7" - sources."@babel/plugin-transform-spread-7.16.7" + sources."@babel/plugin-transform-spread-7.17.12" sources."@babel/plugin-transform-sticky-regex-7.16.7" - sources."@babel/plugin-transform-template-literals-7.16.7" - sources."@babel/plugin-transform-typeof-symbol-7.16.7" + sources."@babel/plugin-transform-template-literals-7.17.12" + sources."@babel/plugin-transform-typeof-symbol-7.17.12" sources."@babel/plugin-transform-unicode-escapes-7.16.7" sources."@babel/plugin-transform-unicode-regex-7.16.7" - sources."@babel/preset-env-7.17.10" + sources."@babel/preset-env-7.17.12" sources."@babel/preset-modules-0.1.5" - sources."@babel/preset-react-7.16.7" + sources."@babel/preset-react-7.17.12" sources."@babel/runtime-7.17.9" sources."@babel/template-7.16.7" - sources."@babel/traverse-7.17.10" - sources."@babel/types-7.17.10" - sources."@blueprintjs/colors-4.1.2" + sources."@babel/traverse-7.17.12" + sources."@babel/types-7.17.12" + sources."@blueprintjs/colors-4.1.3" sources."@blueprintjs/core-3.54.0" sources."@blueprintjs/icons-3.33.0" sources."@deltachat/message_parser_wasm-0.3.0" @@ -88337,7 +88389,7 @@ in sources."@mapbox/geojson-coords-0.0.2" sources."@mapbox/geojson-extent-1.0.1" sources."@mapbox/geojson-normalize-0.0.1" - sources."@mapbox/geojson-rewind-0.5.1" + sources."@mapbox/geojson-rewind-0.5.2" sources."@mapbox/geojson-types-1.0.2" sources."@mapbox/jsonlint-lines-primitives-2.0.2" sources."@mapbox/mapbox-gl-supported-1.5.0" @@ -88355,7 +88407,7 @@ in sources."@types/mapbox-gl-0.54.5" sources."@types/mime-types-2.1.1" sources."@types/minimist-1.2.2" - sources."@types/node-14.18.17" + sources."@types/node-14.18.18" sources."@types/node-fetch-2.6.1" sources."@types/prop-types-15.7.5" sources."@types/rc-1.2.1" @@ -88412,7 +88464,7 @@ in ]; }) sources."call-bind-1.0.2" - sources."caniuse-lite-1.0.30001340" + sources."caniuse-lite-1.0.30001341" sources."chalk-2.4.2" sources."chokidar-2.1.8" (sources."class-utils-0.3.6" // { @@ -88461,7 +88513,7 @@ in sources."core-util-is-1.0.3" sources."crypto-random-string-1.0.0" sources."csscolorparser-1.0.3" - sources."csstype-3.0.11" + sources."csstype-3.1.0" sources."debounce-1.2.1" sources."debug-4.3.4" sources."decode-uri-component-0.2.0" @@ -88957,14 +89009,14 @@ in sources."commander-5.1.0" sources."concat-map-0.0.1" sources."crypto-random-string-2.0.0" - sources."del-6.0.0" + sources."del-6.1.0" sources."dir-glob-3.0.1" sources."fast-glob-3.2.11" sources."fastq-1.13.0" sources."fill-range-7.0.1" sources."find-up-4.1.0" sources."fs.realpath-1.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."globby-11.1.0" sources."graceful-fs-4.2.10" @@ -89057,15 +89109,15 @@ in elasticdump = nodeEnv.buildNodePackage { name = "elasticdump"; packageName = "elasticdump"; - version = "6.84.0"; + version = "6.84.1"; src = fetchurl { - url = "https://registry.npmjs.org/elasticdump/-/elasticdump-6.84.0.tgz"; - sha512 = "AMU2VN264ic/57c2FTW7XW271FFDOZvZX56fzOna9VkvszRwT4HJdVStizWjy40flUZFxRa2w9jvSwDg0aryzA=="; + url = "https://registry.npmjs.org/elasticdump/-/elasticdump-6.84.1.tgz"; + sha512 = "qgHJeGGNMJFwGMpidCOCKZsbq6bUth2cvns1QdrJnCIoojv5x0J4C6Xm5zh8sZCYr7y5nrwfgMUkrbMNLHdGwQ=="; }; dependencies = [ sources."@fast-csv/format-4.3.5" sources."@fast-csv/parse-4.3.6" - sources."@types/node-14.18.17" + sources."@types/node-14.18.18" sources."JSONStream-1.3.5" sources."ajv-6.12.6" sources."asn1-0.2.6" @@ -89274,7 +89326,7 @@ in sources."@types/json-buffer-3.0.0" sources."@types/keyv-3.1.4" sources."@types/minimatch-3.0.5" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/responselike-1.0.0" sources."@types/yauzl-2.10.0" sources."abbrev-1.1.1" @@ -89480,7 +89532,7 @@ in }) sources."get-stream-5.2.0" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."global-agent-3.0.0" sources."global-modules-1.0.0" @@ -89545,7 +89597,7 @@ in sources."jsonfile-6.1.0" sources."jsprim-1.4.2" sources."junk-3.1.0" - sources."keyv-4.2.7" + sources."keyv-4.2.9" sources."load-json-file-2.0.0" sources."locate-path-2.0.0" sources."lodash-4.17.21" @@ -89773,7 +89825,7 @@ in sources."xtend-2.1.2" sources."y18n-5.0.8" sources."yallist-4.0.0" - (sources."yargs-17.5.0" // { + (sources."yargs-17.5.1" // { dependencies = [ sources."yargs-parser-21.0.1" ]; @@ -89832,12 +89884,16 @@ in sources."@ampproject/remapping-2.2.0" sources."@babel/code-frame-7.16.7" sources."@babel/compat-data-7.17.10" - (sources."@babel/core-7.17.10" // { + (sources."@babel/core-7.17.12" // { dependencies = [ sources."semver-6.3.0" ]; }) - sources."@babel/generator-7.17.10" + (sources."@babel/generator-7.17.12" // { + dependencies = [ + sources."@jridgewell/gen-mapping-0.3.1" + ]; + }) sources."@babel/helper-annotate-as-pure-7.16.7" (sources."@babel/helper-compilation-targets-7.17.10" // { dependencies = [ @@ -89848,24 +89904,24 @@ in sources."@babel/helper-function-name-7.17.9" sources."@babel/helper-hoist-variables-7.16.7" sources."@babel/helper-module-imports-7.16.7" - sources."@babel/helper-module-transforms-7.17.7" - sources."@babel/helper-plugin-utils-7.16.7" + sources."@babel/helper-module-transforms-7.17.12" + sources."@babel/helper-plugin-utils-7.17.12" sources."@babel/helper-simple-access-7.17.7" sources."@babel/helper-split-export-declaration-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" sources."@babel/helper-validator-option-7.16.7" sources."@babel/helpers-7.17.9" - sources."@babel/highlight-7.17.9" - sources."@babel/parser-7.17.10" - sources."@babel/plugin-proposal-object-rest-spread-7.17.3" - sources."@babel/plugin-syntax-jsx-7.16.7" + sources."@babel/highlight-7.17.12" + sources."@babel/parser-7.17.12" + sources."@babel/plugin-proposal-object-rest-spread-7.17.12" + sources."@babel/plugin-syntax-jsx-7.17.12" sources."@babel/plugin-syntax-object-rest-spread-7.8.3" - sources."@babel/plugin-transform-destructuring-7.17.7" - sources."@babel/plugin-transform-parameters-7.16.7" - sources."@babel/plugin-transform-react-jsx-7.17.3" + sources."@babel/plugin-transform-destructuring-7.17.12" + sources."@babel/plugin-transform-parameters-7.17.12" + sources."@babel/plugin-transform-react-jsx-7.17.12" sources."@babel/template-7.16.7" - sources."@babel/traverse-7.17.10" - sources."@babel/types-7.17.10" + sources."@babel/traverse-7.17.12" + sources."@babel/types-7.17.12" sources."@jridgewell/gen-mapping-0.1.1" sources."@jridgewell/resolve-uri-3.0.7" sources."@jridgewell/set-array-1.1.1" @@ -89895,7 +89951,7 @@ in sources."callsites-3.1.0" sources."camelcase-5.3.1" sources."camelcase-keys-6.2.2" - sources."caniuse-lite-1.0.30001340" + sources."caniuse-lite-1.0.30001341" sources."chalk-2.4.2" sources."ci-info-2.0.0" sources."cli-boxes-2.2.1" @@ -89941,7 +89997,7 @@ in sources."function-bind-1.1.1" sources."gensync-1.0.0-beta.2" sources."get-stream-4.1.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."globals-11.12.0" sources."hard-rejection-2.1.0" sources."has-1.0.3" @@ -90157,7 +90213,7 @@ in dependencies = [ sources."@babel/code-frame-7.12.11" sources."@babel/helper-validator-identifier-7.16.7" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -90187,20 +90243,21 @@ in sources."strip-json-comments-3.1.1" ]; }) - sources."@fluentui/date-time-utilities-8.5.0" - sources."@fluentui/dom-utilities-2.2.0" - sources."@fluentui/font-icons-mdl2-8.3.2" - sources."@fluentui/foundation-legacy-8.2.6" - sources."@fluentui/keyboard-key-0.4.0" - sources."@fluentui/merge-styles-8.5.1" - sources."@fluentui/react-8.67.4" - sources."@fluentui/react-focus-8.5.7" - sources."@fluentui/react-hooks-8.5.4" - sources."@fluentui/react-window-provider-2.2.0" - sources."@fluentui/set-version-8.2.0" - sources."@fluentui/style-utilities-8.6.6" - sources."@fluentui/theme-2.6.5" - sources."@fluentui/utilities-8.8.2" + sources."@fluentui/date-time-utilities-8.5.1" + sources."@fluentui/dom-utilities-2.2.1" + sources."@fluentui/font-icons-mdl2-8.3.3" + sources."@fluentui/foundation-legacy-8.2.7" + sources."@fluentui/keyboard-key-0.4.1" + sources."@fluentui/merge-styles-8.5.2" + sources."@fluentui/react-8.68.2" + sources."@fluentui/react-focus-8.5.8" + sources."@fluentui/react-hooks-8.5.5" + sources."@fluentui/react-portal-compat-context-9.0.0-rc.1" + sources."@fluentui/react-window-provider-2.2.1" + sources."@fluentui/set-version-8.2.1" + sources."@fluentui/style-utilities-8.6.7" + sources."@fluentui/theme-2.6.6" + sources."@fluentui/utilities-8.8.3" (sources."@gulp-sourcemaps/identity-map-2.0.1" // { dependencies = [ sources."acorn-6.4.2" @@ -90222,21 +90279,21 @@ in ]; }) sources."@humanwhocodes/object-schema-1.2.1" - sources."@microsoft/load-themed-styles-1.10.263" - sources."@node-rs/crc32-1.5.0" - sources."@node-rs/crc32-android-arm-eabi-1.5.0" - sources."@node-rs/crc32-android-arm64-1.5.0" - sources."@node-rs/crc32-darwin-arm64-1.5.0" - sources."@node-rs/crc32-darwin-x64-1.5.0" - sources."@node-rs/crc32-freebsd-x64-1.5.0" - sources."@node-rs/crc32-linux-arm-gnueabihf-1.5.0" - sources."@node-rs/crc32-linux-arm64-gnu-1.5.0" - sources."@node-rs/crc32-linux-arm64-musl-1.5.0" - sources."@node-rs/crc32-linux-x64-gnu-1.5.0" - sources."@node-rs/crc32-linux-x64-musl-1.5.0" - sources."@node-rs/crc32-win32-arm64-msvc-1.5.0" - sources."@node-rs/crc32-win32-ia32-msvc-1.5.0" - sources."@node-rs/crc32-win32-x64-msvc-1.5.0" + sources."@microsoft/load-themed-styles-1.10.265" + sources."@node-rs/crc32-1.5.1" + sources."@node-rs/crc32-android-arm-eabi-1.5.1" + sources."@node-rs/crc32-android-arm64-1.5.1" + sources."@node-rs/crc32-darwin-arm64-1.5.1" + sources."@node-rs/crc32-darwin-x64-1.5.1" + sources."@node-rs/crc32-freebsd-x64-1.5.1" + sources."@node-rs/crc32-linux-arm-gnueabihf-1.5.1" + sources."@node-rs/crc32-linux-arm64-gnu-1.5.1" + sources."@node-rs/crc32-linux-arm64-musl-1.5.1" + sources."@node-rs/crc32-linux-x64-gnu-1.5.1" + sources."@node-rs/crc32-linux-x64-musl-1.5.1" + sources."@node-rs/crc32-win32-arm64-msvc-1.5.1" + sources."@node-rs/crc32-win32-ia32-msvc-1.5.1" + sources."@node-rs/crc32-win32-x64-msvc-1.5.1" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" @@ -90306,7 +90363,7 @@ in sources."aggregate-error-3.1.0" sources."ajv-8.11.0" sources."ajv-formats-2.1.1" - sources."ansi-colors-4.1.1" + sources."ansi-colors-4.1.3" sources."ansi-cyan-0.1.1" (sources."ansi-escapes-4.3.2" // { dependencies = [ @@ -90575,7 +90632,7 @@ in (sources."del-6.0.0" // { dependencies = [ sources."brace-expansion-1.1.11" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."minimatch-3.1.2" sources."rimraf-3.0.2" ]; @@ -90753,7 +90810,7 @@ in dependencies = [ sources."brace-expansion-1.1.11" sources."flatted-3.2.5" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."minimatch-3.1.2" sources."rimraf-3.0.2" ]; @@ -90794,12 +90851,12 @@ in sources."get-stream-4.1.0" sources."get-value-2.0.6" sources."getpass-0.1.7" - sources."glob-8.0.2" + sources."glob-8.0.3" sources."glob-parent-5.1.2" (sources."glob-stream-6.1.0" // { dependencies = [ sources."brace-expansion-1.1.11" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-3.1.0" sources."is-glob-3.1.0" sources."isarray-1.0.0" @@ -90851,7 +90908,7 @@ in sources."espree-6.2.1" sources."file-entry-cache-5.0.1" sources."flat-cache-2.0.1" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."globals-12.4.0" sources."has-flag-3.0.0" sources."ignore-4.0.6" @@ -91075,7 +91132,7 @@ in sources."mime-types-2.1.35" sources."mimic-fn-2.1.0" sources."mimic-response-1.0.1" - sources."minimatch-5.0.1" + sources."minimatch-5.1.0" sources."minimist-1.2.5" (sources."minipass-2.9.0" // { dependencies = [ @@ -91094,7 +91151,7 @@ in ]; }) sources."fs-routes-8.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."json-schema-traverse-0.4.1" sources."minimatch-3.1.2" (sources."openapi-default-setter-8.0.0" // { @@ -91139,7 +91196,7 @@ in ]; }) sources."openapi-types-7.2.3" - sources."swagger-ui-dist-4.11.0" + sources."swagger-ui-dist-4.11.1" ]; }) (sources."mixin-deep-1.3.2" // { @@ -91188,7 +91245,7 @@ in (sources."node-gyp-3.8.0" // { dependencies = [ sources."brace-expansion-1.1.11" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."minimatch-3.1.2" sources."minimist-1.2.6" sources."mkdirp-0.5.6" @@ -91423,7 +91480,7 @@ in (sources."rimraf-2.7.1" // { dependencies = [ sources."brace-expansion-1.1.11" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."minimatch-3.1.2" ]; }) @@ -91642,7 +91699,7 @@ in sources."brace-expansion-1.1.11" sources."buffer-6.0.3" sources."debug-4.3.4" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."minimatch-3.1.2" sources."ms-2.1.2" ]; @@ -91738,7 +91795,7 @@ in sources."supports-color-2.0.0" ]; }) - (sources."yargs-17.5.0" // { + (sources."yargs-17.5.1" // { dependencies = [ sources."ansi-regex-5.0.1" sources."is-fullwidth-code-point-3.0.0" @@ -91750,7 +91807,7 @@ in sources."yargs-parser-20.2.9" sources."yn-3.1.1" sources."zen-observable-0.8.15" - sources."zen-observable-ts-1.2.3" + sources."zen-observable-ts-1.2.5" ]; buildInputs = globalBuildInputs; meta = { @@ -91771,7 +91828,7 @@ in sources."@achrinza/node-ipc-9.2.2" sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - sources."@babel/highlight-7.17.9" + sources."@babel/highlight-7.17.12" (sources."@eslint/eslintrc-0.4.3" // { dependencies = [ sources."acorn-7.4.1" @@ -91820,7 +91877,7 @@ in sources."@types/mime-1.3.2" sources."@types/minimatch-3.0.5" sources."@types/minimist-1.2.2" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/normalize-package-data-2.4.1" sources."@types/parse-json-4.0.0" sources."@types/q-1.5.5" @@ -92135,7 +92192,7 @@ in sources."camel-case-3.0.0" sources."camelcase-5.3.1" sources."caniuse-api-3.0.0" - sources."caniuse-lite-1.0.30001340" + sources."caniuse-lite-1.0.30001341" sources."case-sensitive-paths-webpack-plugin-2.4.0" sources."caseless-0.12.0" sources."chalk-2.4.2" @@ -92395,14 +92452,14 @@ in }) (sources."enquirer-2.3.6" // { dependencies = [ - sources."ansi-colors-4.1.1" + sources."ansi-colors-4.1.3" ]; }) sources."entities-2.2.0" sources."errno-0.1.8" sources."error-ex-1.3.2" sources."error-stack-parser-2.0.7" - sources."es-abstract-1.20.0" + sources."es-abstract-1.20.1" sources."es-to-primitive-1.2.1" sources."es6-promise-4.2.8" sources."escalade-3.1.1" @@ -92598,7 +92655,7 @@ in sources."get-symbol-description-1.0.0" sources."get-value-2.0.6" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."glob-to-regexp-0.3.0" (sources."globals-13.15.0" // { @@ -92828,7 +92885,7 @@ in sources."md5.js-1.3.5" sources."mdn-data-2.0.4" sources."media-typer-0.3.0" - sources."memfs-3.4.1" + sources."memfs-3.4.3" sources."memory-fs-0.4.1" sources."merge-descriptors-1.0.1" (sources."merge-source-map-1.1.0" // { @@ -93791,7 +93848,7 @@ in sources."flatted-3.2.5" sources."fs.realpath-1.0.0" sources."functional-red-black-tree-1.0.1" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-6.0.2" sources."globals-13.15.0" sources."has-flag-4.0.0" @@ -93901,7 +93958,7 @@ in sources."flatted-3.2.5" sources."fs.realpath-1.0.0" sources."functional-red-black-tree-1.0.1" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-6.0.2" sources."globals-13.15.0" sources."has-flag-4.0.0" @@ -93976,10 +94033,10 @@ in expo-cli = nodeEnv.buildNodePackage { name = "expo-cli"; packageName = "expo-cli"; - version = "5.4.3"; + version = "5.4.4"; src = fetchurl { - url = "https://registry.npmjs.org/expo-cli/-/expo-cli-5.4.3.tgz"; - sha512 = "MT21EV+7e53qqXcRGZaovguOVBG4mmpm6JpZnC5grQAsWn6Jf+YwEk5XUORhIyM2FcrQfnseAJJuRA1OY4kzrw=="; + url = "https://registry.npmjs.org/expo-cli/-/expo-cli-5.4.4.tgz"; + sha512 = "+lz0T6DqBDXvj/Z7wJ57MXt73Gucb0aJhGD7syD/mpu6u91AWqUR1s3bts9R/9A+bGeEf5LEMOW3LeAD0L45GQ=="; }; dependencies = [ sources."@babel/code-frame-7.10.4" @@ -93989,45 +94046,45 @@ in sources."semver-5.7.1" ]; }) - sources."@babel/generator-7.17.10" + sources."@babel/generator-7.17.12" sources."@babel/helper-environment-visitor-7.16.7" sources."@babel/helper-function-name-7.17.9" sources."@babel/helper-hoist-variables-7.16.7" sources."@babel/helper-module-imports-7.16.7" - sources."@babel/helper-module-transforms-7.17.7" + sources."@babel/helper-module-transforms-7.17.12" sources."@babel/helper-simple-access-7.17.7" sources."@babel/helper-split-export-declaration-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" sources."@babel/helpers-7.17.9" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."chalk-2.4.2" ]; }) - sources."@babel/parser-7.17.10" + sources."@babel/parser-7.17.12" sources."@babel/runtime-7.9.0" (sources."@babel/template-7.16.7" // { dependencies = [ sources."@babel/code-frame-7.16.7" ]; }) - (sources."@babel/traverse-7.17.10" // { + (sources."@babel/traverse-7.17.12" // { dependencies = [ sources."@babel/code-frame-7.16.7" ]; }) - sources."@babel/types-7.17.10" + sources."@babel/types-7.17.12" sources."@expo/apple-utils-0.0.0-alpha.31" sources."@expo/bunyan-4.0.0" - sources."@expo/config-6.0.23" - (sources."@expo/config-plugins-4.1.4" // { + sources."@expo/config-6.0.24" + (sources."@expo/config-plugins-4.1.5" // { dependencies = [ sources."semver-7.3.7" ]; }) sources."@expo/config-types-45.0.0" - sources."@expo/dev-server-0.1.110" - sources."@expo/dev-tools-0.13.152" + sources."@expo/dev-server-0.1.111" + sources."@expo/dev-tools-0.13.153" (sources."@expo/devcert-1.0.0" // { dependencies = [ sources."debug-3.2.7" @@ -94044,9 +94101,9 @@ in ]; }) sources."@expo/json-file-8.2.36" - sources."@expo/metro-config-0.3.16" + sources."@expo/metro-config-0.3.17" sources."@expo/osascript-2.0.33" - (sources."@expo/package-manager-0.0.53" // { + (sources."@expo/package-manager-0.0.54" // { dependencies = [ sources."npm-package-arg-7.0.0" sources."rimraf-3.0.2" @@ -94058,12 +94115,12 @@ in sources."xmlbuilder-14.0.0" ]; }) - sources."@expo/prebuild-config-4.0.0" + sources."@expo/prebuild-config-4.0.1" sources."@expo/rudder-sdk-node-1.1.1" sources."@expo/schemer-1.4.1" sources."@expo/sdk-runtime-versions-1.0.0" sources."@expo/spawn-async-1.5.0" - sources."@expo/webpack-config-0.16.23" + sources."@expo/webpack-config-0.16.24" (sources."@expo/xcpretty-4.1.2" // { dependencies = [ sources."js-yaml-4.1.0" @@ -94072,9 +94129,11 @@ in sources."@gar/promisify-1.1.3" sources."@hapi/hoek-9.3.0" sources."@hapi/topo-5.1.0" - sources."@jridgewell/gen-mapping-0.1.1" + sources."@jridgewell/gen-mapping-0.3.1" + sources."@jridgewell/resolve-uri-3.0.7" sources."@jridgewell/set-array-1.1.1" sources."@jridgewell/sourcemap-codec-1.4.13" + sources."@jridgewell/trace-mapping-0.3.13" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" @@ -94272,7 +94331,6 @@ in sources."bytes-3.1.0" (sources."cacache-15.3.0" // { dependencies = [ - sources."minipass-3.1.6" sources."mkdirp-1.0.4" sources."rimraf-3.0.2" ]; @@ -94292,7 +94350,7 @@ in }) sources."camelcase-6.3.0" sources."caniuse-api-3.0.0" - sources."caniuse-lite-1.0.30001340" + sources."caniuse-lite-1.0.30001341" (sources."chalk-4.1.2" // { dependencies = [ sources."ansi-styles-4.3.0" @@ -94500,7 +94558,7 @@ in sources."define-lazy-prop-2.0.0" sources."define-properties-1.1.4" sources."define-property-2.0.2" - (sources."del-6.0.0" // { + (sources."del-6.1.0" // { dependencies = [ sources."rimraf-3.0.2" ]; @@ -94571,7 +94629,7 @@ in sources."eol-0.9.1" sources."errno-0.1.8" sources."error-ex-1.3.2" - sources."es-abstract-1.20.0" + sources."es-abstract-1.20.1" sources."es-to-primitive-1.2.1" sources."escalade-3.1.1" sources."escape-html-1.0.3" @@ -94622,7 +94680,7 @@ in sources."fs-extra-9.1.0" ]; }) - (sources."expo-pwa-0.0.118" // { + (sources."expo-pwa-0.0.119" // { dependencies = [ sources."commander-2.20.0" ]; @@ -94718,11 +94776,7 @@ in sources."universalify-1.0.0" ]; }) - (sources."fs-minipass-2.1.0" // { - dependencies = [ - sources."minipass-3.1.6" - ]; - }) + sources."fs-minipass-2.1.0" sources."fs-write-stream-atomic-1.0.10" sources."fs.realpath-1.0.0" sources."fsevents-2.3.2" @@ -94962,7 +95016,7 @@ in sources."json5-1.0.1" sources."jsonfile-6.1.0" sources."keychain-1.3.0" - sources."keyv-4.2.7" + sources."keyv-4.2.9" sources."killable-1.0.1" sources."kind-of-6.0.3" sources."kleur-3.0.3" @@ -95039,31 +95093,11 @@ in sources."minimalistic-crypto-utils-1.0.1" sources."minimatch-3.1.2" sources."minimist-1.2.6" - (sources."minipass-2.3.5" // { - dependencies = [ - sources."yallist-3.1.1" - ]; - }) - (sources."minipass-collect-1.0.2" // { - dependencies = [ - sources."minipass-3.1.6" - ]; - }) - (sources."minipass-flush-1.0.5" // { - dependencies = [ - sources."minipass-3.1.6" - ]; - }) - (sources."minipass-pipeline-1.2.4" // { - dependencies = [ - sources."minipass-3.1.6" - ]; - }) - (sources."minizlib-2.1.2" // { - dependencies = [ - sources."minipass-3.1.6" - ]; - }) + sources."minipass-3.1.6" + sources."minipass-collect-1.0.2" + sources."minipass-flush-1.0.5" + sources."minipass-pipeline-1.2.4" + sources."minizlib-2.1.2" sources."mississippi-3.0.0" (sources."mixin-deep-1.3.2" // { dependencies = [ @@ -95632,11 +95666,7 @@ in sources."split-1.0.1" sources."split-string-3.1.0" sources."sprintf-js-1.0.3" - (sources."ssri-8.0.1" // { - dependencies = [ - sources."minipass-3.1.6" - ]; - }) + sources."ssri-8.0.1" sources."stable-0.1.8" (sources."static-extend-0.1.2" // { dependencies = [ @@ -95721,7 +95751,6 @@ in sources."tapable-1.1.3" (sources."tar-6.1.11" // { dependencies = [ - sources."minipass-3.1.6" sources."mkdirp-1.0.4" ]; }) @@ -96022,17 +96051,11 @@ in sources."uuid-7.0.3" ]; }) - (sources."xdl-59.2.36" // { + (sources."xdl-59.2.37" // { dependencies = [ sources."bplist-parser-0.3.2" - sources."chownr-1.1.4" - sources."fs-minipass-1.2.7" sources."minimatch-3.0.4" - sources."minipass-2.9.0" - sources."minizlib-1.3.3" sources."p-map-3.0.0" - sources."tar-4.4.6" - sources."yallist-3.1.1" ]; }) (sources."xml2js-0.4.23" // { @@ -96089,39 +96112,43 @@ in sources."@ampproject/remapping-2.2.0" sources."@babel/code-frame-7.16.7" sources."@babel/compat-data-7.17.10" - sources."@babel/core-7.17.10" - sources."@babel/generator-7.17.10" + sources."@babel/core-7.17.12" + (sources."@babel/generator-7.17.12" // { + dependencies = [ + sources."@jridgewell/gen-mapping-0.3.1" + ]; + }) sources."@babel/helper-annotate-as-pure-7.16.7" sources."@babel/helper-compilation-targets-7.17.10" sources."@babel/helper-environment-visitor-7.16.7" sources."@babel/helper-function-name-7.17.9" sources."@babel/helper-hoist-variables-7.16.7" sources."@babel/helper-module-imports-7.16.7" - sources."@babel/helper-module-transforms-7.17.7" - sources."@babel/helper-plugin-utils-7.16.7" + sources."@babel/helper-module-transforms-7.17.12" + sources."@babel/helper-plugin-utils-7.17.12" sources."@babel/helper-simple-access-7.17.7" sources."@babel/helper-split-export-declaration-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" sources."@babel/helper-validator-option-7.16.7" sources."@babel/helpers-7.17.9" - sources."@babel/highlight-7.17.9" - sources."@babel/parser-7.17.10" - sources."@babel/plugin-proposal-object-rest-spread-7.17.3" - sources."@babel/plugin-syntax-jsx-7.16.7" + sources."@babel/highlight-7.17.12" + sources."@babel/parser-7.17.12" + sources."@babel/plugin-proposal-object-rest-spread-7.17.12" + sources."@babel/plugin-syntax-jsx-7.17.12" sources."@babel/plugin-syntax-object-rest-spread-7.8.3" - sources."@babel/plugin-transform-destructuring-7.17.7" - sources."@babel/plugin-transform-parameters-7.16.7" - sources."@babel/plugin-transform-react-jsx-7.17.3" + sources."@babel/plugin-transform-destructuring-7.17.12" + sources."@babel/plugin-transform-parameters-7.17.12" + sources."@babel/plugin-transform-react-jsx-7.17.12" sources."@babel/template-7.16.7" - sources."@babel/traverse-7.17.10" - sources."@babel/types-7.17.10" + sources."@babel/traverse-7.17.12" + sources."@babel/types-7.17.12" sources."@jridgewell/gen-mapping-0.1.1" sources."@jridgewell/resolve-uri-3.0.7" sources."@jridgewell/set-array-1.1.1" sources."@jridgewell/sourcemap-codec-1.4.13" sources."@jridgewell/trace-mapping-0.3.13" sources."@types/minimist-1.2.2" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/normalize-package-data-2.4.1" sources."@types/yauzl-2.10.0" sources."@types/yoga-layout-1.9.2" @@ -96148,7 +96175,7 @@ in sources."callsites-3.1.0" sources."camelcase-5.3.1" sources."camelcase-keys-6.2.2" - sources."caniuse-lite-1.0.30001340" + sources."caniuse-lite-1.0.30001341" sources."chalk-2.4.2" sources."chownr-1.1.4" sources."ci-info-2.0.0" @@ -96188,7 +96215,7 @@ in sources."function-bind-1.1.1" sources."gensync-1.0.0-beta.2" sources."get-stream-5.2.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."globals-11.12.0" sources."hard-rejection-2.1.0" sources."has-1.0.3" @@ -96800,7 +96827,7 @@ in sources."@types/duplexify-3.6.1" sources."@types/json-schema-7.0.11" sources."@types/long-4.0.2" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."abbrev-1.1.1" sources."abort-controller-3.0.0" sources."accepts-1.3.8" @@ -97123,7 +97150,7 @@ in ]; }) sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."glob-slash-1.0.0" sources."glob-slasher-1.0.1" @@ -97262,7 +97289,7 @@ in sources."socks-proxy-agent-6.2.0" ]; }) - sources."marked-4.0.15" + sources."marked-4.0.16" (sources."marked-terminal-3.3.0" // { dependencies = [ sources."ansi-escapes-3.2.0" @@ -97367,7 +97394,7 @@ in sources."retry-0.12.0" ]; }) - sources."proto3-json-serializer-0.1.8" + sources."proto3-json-serializer-0.1.9" sources."protobufjs-6.11.2" sources."proxy-addr-2.0.7" (sources."proxy-agent-5.0.0" // { @@ -97625,7 +97652,7 @@ in sources."escalade-3.1.1" sources."fs.realpath-1.0.0" sources."get-caller-file-2.0.5" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."inflight-1.0.6" sources."inherits-2.0.4" sources."is-fullwidth-code-point-3.0.0" @@ -97663,7 +97690,7 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -97886,7 +97913,7 @@ in sources."@types/atob-2.1.2" sources."@types/bn.js-5.1.0" sources."@types/inquirer-6.5.0" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/pbkdf2-3.1.0" sources."@types/secp256k1-4.0.3" sources."@types/through-0.0.30" @@ -98219,7 +98246,7 @@ in sources."dot-prop-4.2.1" sources."duplexer-0.1.2" sources."enabled-2.0.0" - sources."es-abstract-1.20.0" + sources."es-abstract-1.20.1" sources."es-get-iterator-1.1.2" sources."es-to-primitive-1.2.1" sources."event-stream-3.3.4" @@ -98262,8 +98289,8 @@ in }) sources."flatiron-0.4.3" sources."fn.name-1.1.0" + sources."for-each-0.3.3" sources."for-in-1.0.2" - sources."foreach-2.0.6" sources."forever-monitor-3.0.3" sources."fragment-cache-0.2.1" sources."from-0.1.7" @@ -98275,7 +98302,7 @@ in sources."get-intrinsic-1.1.1" sources."get-symbol-description-1.0.0" sources."get-value-2.0.6" - sources."glob-7.2.0" + sources."glob-7.2.3" (sources."glob-parent-3.1.0" // { dependencies = [ sources."is-glob-3.1.0" @@ -98329,7 +98356,7 @@ in sources."is-stream-2.0.1" sources."is-string-1.0.7" sources."is-symbol-1.0.4" - sources."is-typed-array-1.1.8" + sources."is-typed-array-1.1.9" sources."is-weakmap-2.0.1" sources."is-weakref-1.0.2" sources."is-weakset-2.0.2" @@ -98543,7 +98570,7 @@ in }) sources."which-boxed-primitive-1.0.2" sources."which-collection-1.0.1" - sources."which-typed-array-1.1.7" + sources."which-typed-array-1.1.8" (sources."winston-3.7.2" // { dependencies = [ sources."async-3.2.3" @@ -98663,46 +98690,50 @@ in sources."@ampproject/remapping-2.2.0" sources."@babel/code-frame-7.16.7" sources."@babel/compat-data-7.17.10" - (sources."@babel/core-7.17.10" // { + (sources."@babel/core-7.17.12" // { dependencies = [ sources."semver-6.3.0" ]; }) - sources."@babel/generator-7.17.10" + (sources."@babel/generator-7.17.12" // { + dependencies = [ + sources."@jridgewell/gen-mapping-0.3.1" + ]; + }) sources."@babel/helper-annotate-as-pure-7.16.7" (sources."@babel/helper-compilation-targets-7.17.10" // { dependencies = [ sources."semver-6.3.0" ]; }) - sources."@babel/helper-create-class-features-plugin-7.17.9" + sources."@babel/helper-create-class-features-plugin-7.17.12" sources."@babel/helper-environment-visitor-7.16.7" sources."@babel/helper-function-name-7.17.9" sources."@babel/helper-hoist-variables-7.16.7" sources."@babel/helper-member-expression-to-functions-7.17.7" sources."@babel/helper-module-imports-7.16.7" - sources."@babel/helper-module-transforms-7.17.7" + sources."@babel/helper-module-transforms-7.17.12" sources."@babel/helper-optimise-call-expression-7.16.7" - sources."@babel/helper-plugin-utils-7.16.7" + sources."@babel/helper-plugin-utils-7.17.12" sources."@babel/helper-replace-supers-7.16.7" sources."@babel/helper-simple-access-7.17.7" sources."@babel/helper-split-export-declaration-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" sources."@babel/helper-validator-option-7.16.7" sources."@babel/helpers-7.17.9" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."chalk-2.4.2" ]; }) - sources."@babel/parser-7.17.10" - sources."@babel/plugin-syntax-typescript-7.17.10" - sources."@babel/plugin-transform-typescript-7.16.8" - sources."@babel/preset-typescript-7.16.7" + sources."@babel/parser-7.17.12" + sources."@babel/plugin-syntax-typescript-7.17.12" + sources."@babel/plugin-transform-typescript-7.17.12" + sources."@babel/preset-typescript-7.17.12" sources."@babel/runtime-7.17.9" sources."@babel/template-7.16.7" - sources."@babel/traverse-7.17.10" - sources."@babel/types-7.17.10" + sources."@babel/traverse-7.17.12" + sources."@babel/types-7.17.12" sources."@hapi/hoek-9.3.0" sources."@hapi/topo-5.1.0" sources."@jridgewell/gen-mapping-0.1.1" @@ -98710,6 +98741,12 @@ in sources."@jridgewell/set-array-1.1.1" sources."@jridgewell/sourcemap-codec-1.4.13" sources."@jridgewell/trace-mapping-0.3.13" + sources."@lmdb/lmdb-darwin-arm64-2.4.0" + sources."@lmdb/lmdb-darwin-x64-2.4.0" + sources."@lmdb/lmdb-linux-arm-2.4.0" + sources."@lmdb/lmdb-linux-arm64-2.4.0" + sources."@lmdb/lmdb-linux-x64-2.4.0" + sources."@lmdb/lmdb-win32-x64-2.4.0" sources."@sideway/address-4.1.4" sources."@sideway/formula-3.0.0" sources."@sideway/pinpoint-2.0.0" @@ -98723,7 +98760,7 @@ in sources."@types/http-cache-semantics-4.0.1" sources."@types/json-buffer-3.0.0" sources."@types/keyv-3.1.4" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/node-fetch-2.6.1" sources."@types/responselike-1.0.0" sources."@types/yoga-layout-1.9.2" @@ -98752,7 +98789,7 @@ in }) sources."call-bind-1.0.2" sources."camelcase-6.3.0" - sources."caniuse-lite-1.0.30001340" + sources."caniuse-lite-1.0.30001341" (sources."chalk-4.1.2" // { dependencies = [ sources."ansi-styles-4.3.0" @@ -98871,7 +98908,7 @@ in sources."get-intrinsic-1.1.1" sources."get-stream-4.1.0" sources."git-up-4.0.5" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."global-dirs-3.0.0" sources."globals-11.12.0" sources."got-11.8.3" @@ -98917,16 +98954,10 @@ in sources."json-buffer-3.0.1" sources."json5-2.2.1" sources."jsonfile-6.1.0" - sources."keyv-4.2.7" + sources."keyv-4.2.9" sources."kleur-3.0.3" sources."latest-version-5.1.0" - sources."lmdb-2.3.10" - sources."lmdb-darwin-arm64-2.3.10" - sources."lmdb-darwin-x64-2.3.10" - sources."lmdb-linux-arm-2.3.10" - sources."lmdb-linux-arm64-2.3.10" - sources."lmdb-linux-x64-2.3.10" - sources."lmdb-win32-x64-2.3.10" + sources."lmdb-2.4.0" sources."locate-path-5.0.0" sources."lock-1.1.0" sources."lodash-4.17.21" @@ -98947,7 +98978,11 @@ in sources."minimist-1.2.6" sources."ms-2.1.2" sources."msgpackr-1.5.7" - sources."msgpackr-extract-1.1.4" + (sources."msgpackr-extract-1.1.4" // { + dependencies = [ + sources."node-gyp-build-optional-packages-4.3.2" + ]; + }) sources."msgpackr-extract-darwin-arm64-1.1.0" sources."msgpackr-extract-darwin-x64-1.1.0" sources."msgpackr-extract-linux-arm-1.1.0" @@ -98955,11 +98990,10 @@ in sources."msgpackr-extract-linux-x64-1.1.0" sources."msgpackr-extract-win32-x64-1.1.0" sources."mute-stream-0.0.8" - sources."nan-2.15.0" sources."nice-try-1.0.5" sources."node-addon-api-4.3.0" sources."node-fetch-2.6.7" - sources."node-gyp-build-optional-packages-4.3.2" + sources."node-gyp-build-optional-packages-5.0.1" sources."node-object-hash-2.3.10" sources."node-releases-2.0.4" sources."normalize-url-6.1.0" @@ -99151,7 +99185,7 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -99200,7 +99234,7 @@ in sources."get-stdin-4.0.1" sources."get-stream-5.2.0" sources."github-username-6.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."has-1.0.3" sources."has-ansi-2.0.0" sources."has-flag-4.0.0" @@ -99610,7 +99644,7 @@ in sources."@types/http-cache-semantics-4.0.1" sources."@types/json-buffer-3.0.0" sources."@types/keyv-3.1.4" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/responselike-1.0.0" sources."ansi-regex-6.0.1" sources."ansi-styles-4.3.0" @@ -99657,7 +99691,7 @@ in sources."is-interactive-2.0.0" sources."is-unicode-supported-1.2.0" sources."json-buffer-3.0.1" - sources."keyv-4.2.7" + sources."keyv-4.2.9" sources."li-1.3.0" (sources."log-symbols-5.1.0" // { dependencies = [ @@ -99723,7 +99757,7 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -100071,10 +100105,10 @@ in glob = nodeEnv.buildNodePackage { name = "glob"; packageName = "glob"; - version = "8.0.2"; + version = "8.0.3"; src = fetchurl { - url = "https://registry.npmjs.org/glob/-/glob-8.0.2.tgz"; - sha512 = "0jzor6jfIKaDg/2FIN+9L8oDxzHTkI/+vwJimOmOZjaVjFVVZJFojOYbbWC0okXbBVSgYpbcuQ7xy6gDP9f8gw=="; + url = "https://registry.npmjs.org/glob/-/glob-8.0.3.tgz"; + sha512 = "ull455NHSHI/Y1FqGaaYFaLGkNMMJbavMrEGFXG/PGrg6y7sutWHUHrz6gy6WEBH6akM1M414dWKCNs+IhKdiQ=="; }; dependencies = [ sources."balanced-match-1.0.2" @@ -100082,7 +100116,7 @@ in sources."fs.realpath-1.0.0" sources."inflight-1.0.6" sources."inherits-2.0.4" - sources."minimatch-5.0.1" + sources."minimatch-5.1.0" sources."once-1.4.0" sources."wrappy-1.0.2" ]; @@ -100117,7 +100151,7 @@ in sources."buffer-alloc-unsafe-1.1.0" sources."buffer-crc32-0.2.13" sources."buffer-fill-1.0.0" - sources."cli-progress-3.11.0" + sources."cli-progress-3.11.1" sources."cliui-7.0.4" sources."color-convert-2.0.1" sources."color-name-1.1.4" @@ -100151,7 +100185,7 @@ in sources."fs.realpath-1.0.0" sources."get-caller-file-2.0.5" sources."get-stream-2.3.1" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."graceful-fs-4.2.10" sources."ieee754-1.2.1" sources."inflight-1.0.6" @@ -100241,7 +100275,7 @@ in sources."wrappy-1.0.2" sources."xtend-4.0.2" sources."y18n-5.0.8" - sources."yargs-17.5.0" + sources."yargs-17.5.1" sources."yargs-parser-21.0.1" sources."yauzl-2.10.0" ]; @@ -100267,7 +100301,7 @@ in sources."@ardatan/aggregate-error-0.0.6" sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -100369,7 +100403,7 @@ in sources."@nodelib/fs.walk-1.2.8" sources."@sindresorhus/is-0.14.0" sources."@szmarczak/http-timer-1.1.2" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/parse-json-4.0.0" sources."@types/websocket-1.0.2" sources."abort-controller-3.0.0" @@ -100463,7 +100497,7 @@ in sources."emoji-regex-8.0.0" sources."end-of-stream-1.4.4" sources."error-ex-1.3.2" - sources."es-abstract-1.20.0" + sources."es-abstract-1.20.1" sources."es-get-iterator-1.1.2" sources."es-to-primitive-1.2.1" sources."es6-promise-3.3.1" @@ -100490,7 +100524,7 @@ in sources."figures-3.2.0" sources."fill-range-7.0.1" sources."filter-obj-2.0.2" - sources."foreach-2.0.6" + sources."for-each-0.3.3" sources."forever-agent-0.6.1" sources."form-data-2.3.3" sources."form-urlencoded-4.5.1" @@ -100506,7 +100540,7 @@ in sources."get-stream-4.1.0" sources."get-symbol-description-1.0.0" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."globby-11.0.1" (sources."got-9.6.0" // { @@ -100582,7 +100616,7 @@ in sources."is-stream-1.1.0" sources."is-string-1.0.7" sources."is-symbol-1.0.4" - sources."is-typed-array-1.1.8" + sources."is-typed-array-1.1.9" sources."is-typedarray-1.0.0" sources."is-unicode-supported-0.1.0" sources."is-weakmap-2.0.1" @@ -100668,7 +100702,7 @@ in sources."oas-linter-3.2.2" (sources."oas-resolver-2.5.6" // { dependencies = [ - sources."yargs-17.5.0" + sources."yargs-17.5.1" ]; }) sources."oas-schema-walker-1.1.5" @@ -100781,7 +100815,7 @@ in sources."supports-color-7.2.0" (sources."swagger2openapi-7.0.8" // { dependencies = [ - sources."yargs-17.5.0" + sources."yargs-17.5.1" ]; }) sources."symbol-observable-1.2.0" @@ -100809,7 +100843,7 @@ in sources."which-1.3.1" sources."which-boxed-primitive-1.0.2" sources."which-collection-1.0.1" - sources."which-typed-array-1.1.7" + sources."which-typed-array-1.1.8" (sources."wrap-ansi-7.0.0" // { dependencies = [ sources."ansi-regex-5.0.1" @@ -100849,7 +100883,7 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -100912,7 +100946,7 @@ in }) sources."@oclif/screen-1.0.4" sources."@types/json-schema-7.0.9" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/parse-json-4.0.0" sources."@types/ws-8.5.3" sources."abort-controller-3.0.0" @@ -101478,7 +101512,7 @@ in sources."isarray-0.0.1" sources."lodash-4.17.21" sources."map-canvas-0.1.5" - sources."marked-4.0.15" + sources."marked-4.0.16" (sources."marked-terminal-5.1.1" // { dependencies = [ sources."chalk-5.0.1" @@ -101713,7 +101747,7 @@ in sources."get-caller-file-1.0.3" sources."get-intrinsic-1.1.1" sources."get-value-2.0.6" - sources."glob-7.2.0" + sources."glob-7.2.3" (sources."glob-parent-3.1.0" // { dependencies = [ sources."is-glob-3.1.0" @@ -102441,7 +102475,7 @@ in sources."commander-9.2.0" sources."concat-map-0.0.1" sources."fs.realpath-1.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."has-flag-4.0.0" sources."inflight-1.0.6" sources."inherits-2.0.4" @@ -102538,7 +102572,7 @@ in dependencies = [ sources."bcfg-0.1.7" sources."bcrypto-5.4.0" - sources."bcurl-0.1.10" + sources."bcurl-0.2.0" sources."bdb-1.3.0" sources."bdns-0.1.5" sources."bevent-0.1.5" @@ -102564,7 +102598,7 @@ in sources."bval-0.1.6" sources."bweb-0.1.10" sources."goosig-0.10.0" - sources."hs-client-0.0.10" + sources."hs-client-0.0.11" sources."loady-0.0.5" sources."mrmr-0.1.10" sources."n64-0.2.10" @@ -102611,14 +102645,14 @@ in hs-client = nodeEnv.buildNodePackage { name = "hs-client"; packageName = "hs-client"; - version = "0.0.10"; + version = "0.0.11"; src = fetchurl { - url = "https://registry.npmjs.org/hs-client/-/hs-client-0.0.10.tgz"; - sha512 = "15tfeQEMRS1FZA0q9gFbQ1jYs8v4z9oKw9xFwVEyRuckn72hoVAglN4IrFxkOCDMYV7TWCY/nO/yNZp5njYFBw=="; + url = "https://registry.npmjs.org/hs-client/-/hs-client-0.0.11.tgz"; + sha512 = "DunENysXNxADDs6YvTjIgFG38U+mGnlDpfEhUzHOAOnkHyYwAIm0PwYJEmJqsbLnpY31xg0lPfRV8t+Ugz+Dew=="; }; dependencies = [ sources."bcfg-0.1.7" - sources."bcurl-0.1.10" + sources."bcurl-0.2.0" sources."brq-0.1.8" sources."bsert-0.0.10" sources."bsock-0.1.9" @@ -102658,7 +102692,7 @@ in sources."extsprintf-1.4.1" sources."fs.realpath-1.0.0" sources."fuzzyset.js-0.0.1" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."hue-sdk-0.1.0" sources."inflight-1.0.6" sources."inherits-2.0.4" @@ -102701,7 +102735,7 @@ in sources."@colors/colors-1.5.0" sources."@fast-csv/format-4.3.5" sources."@fast-csv/parse-4.3.6" - sources."@types/node-14.18.17" + sources."@types/node-14.18.18" sources."ajv-6.12.6" sources."ansi-regex-5.0.1" sources."ansi-styles-4.3.0" @@ -102710,7 +102744,7 @@ in sources."assert-plus-1.0.0" sources."async-2.6.4" sources."asynckit-0.4.0" - sources."aws-sdk-2.1134.0" + sources."aws-sdk-2.1138.0" sources."aws-sign2-0.7.0" sources."aws4-1.11.0" sources."base64-js-1.5.1" @@ -102812,7 +102846,7 @@ in sources."lodash.reject-4.6.0" sources."lodash.some-4.6.0" sources."lodash.uniq-4.5.0" - sources."marked-4.0.15" + sources."marked-4.0.16" sources."mime-db-1.52.0" sources."mime-types-2.1.35" sources."minimist-1.2.6" @@ -103270,7 +103304,7 @@ in sources."fs.realpath-1.0.0" sources."fsevents-2.3.2" sources."get-stream-4.1.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."graceful-fs-4.2.10" sources."historic-readline-1.0.8" sources."iconv-lite-0.6.3" @@ -103281,7 +103315,7 @@ in sources."is-wsl-2.2.0" sources."isexe-2.0.0" sources."jquery-3.6.0" - sources."jquery.terminal-2.33.1" + sources."jquery.terminal-2.33.2" sources."jsonfile-2.4.0" sources."keyboardevent-key-polyfill-1.1.0" sources."line-reader-0.4.0" @@ -103418,7 +103452,7 @@ in sources."fs-extra-9.1.0" sources."fs.realpath-1.0.0" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."graceful-fs-4.2.10" sources."har-schema-2.0.0" @@ -103640,7 +103674,7 @@ in sources."get-intrinsic-1.1.1" sources."get-stream-4.1.0" sources."get-uri-3.0.2" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."graceful-fs-4.2.10" sources."has-1.0.3" sources."has-flag-4.0.0" @@ -103986,7 +104020,7 @@ in sources."universalify-2.0.0" (sources."verda-1.5.0" // { dependencies = [ - sources."yargs-17.5.0" + sources."yargs-17.5.1" sources."yargs-parser-21.0.1" ]; }) @@ -104027,7 +104061,7 @@ in sources."concat-map-0.0.1" (sources."filelist-1.0.4" // { dependencies = [ - sources."minimatch-5.0.1" + sources."minimatch-5.1.0" ]; }) sources."has-flag-4.0.0" @@ -104079,7 +104113,7 @@ in sources."fast-json-patch-2.2.1" sources."fs.realpath-1.0.0" sources."get-func-name-2.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."has-flag-3.0.0" sources."hexer-1.5.0" sources."inflight-1.0.6" @@ -104138,10 +104172,10 @@ in joplin = nodeEnv.buildNodePackage { name = "joplin"; packageName = "joplin"; - version = "2.6.2"; + version = "2.8.1"; src = fetchurl { - url = "https://registry.npmjs.org/joplin/-/joplin-2.6.2.tgz"; - sha512 = "61T3dXujHOPIlSwH6VkWRdMIVr36AkuZd9djuvsNSTOJl7s2C5xeztz47evpIXQCoGRd5ziFivTkAY2euydulw=="; + url = "https://registry.npmjs.org/joplin/-/joplin-2.8.1.tgz"; + sha512 = "+FXfjXao8cM2B23hxnre+BVDTMhVCqvKklX4dK4VdN5fYO9H10S7McY+TH6BCzd23qOQ8w3R+d3JvTJkVaAqzg=="; }; dependencies = [ (sources."@aws-crypto/crc32-2.0.0" // { @@ -104187,9 +104221,17 @@ in sources."@aws-sdk/abort-controller-3.78.0" sources."@aws-sdk/chunked-blob-reader-3.55.0" sources."@aws-sdk/chunked-blob-reader-native-3.58.0" - sources."@aws-sdk/client-s3-3.88.0" + (sources."@aws-sdk/client-s3-3.92.0" // { + dependencies = [ + sources."fast-xml-parser-3.19.0" + ]; + }) sources."@aws-sdk/client-sso-3.85.0" - sources."@aws-sdk/client-sts-3.87.0" + (sources."@aws-sdk/client-sts-3.92.0" // { + dependencies = [ + sources."fast-xml-parser-3.19.0" + ]; + }) sources."@aws-sdk/config-resolver-3.80.0" sources."@aws-sdk/credential-provider-env-3.78.0" sources."@aws-sdk/credential-provider-imds-3.81.0" @@ -104236,7 +104278,7 @@ in sources."@aws-sdk/protocol-http-3.78.0" sources."@aws-sdk/querystring-builder-3.78.0" sources."@aws-sdk/querystring-parser-3.78.0" - sources."@aws-sdk/s3-request-presigner-3.88.0" + sources."@aws-sdk/s3-request-presigner-3.92.0" sources."@aws-sdk/service-error-classification-3.78.0" sources."@aws-sdk/shared-ini-file-loader-3.80.0" sources."@aws-sdk/signature-v4-3.78.0" @@ -104270,28 +104312,33 @@ in sources."@braintree/sanitize-url-3.1.0" sources."@cronvel/get-pixels-3.4.0" sources."@gar/promisify-1.1.3" - sources."@joplin/fork-htmlparser2-4.1.39" - sources."@joplin/fork-sax-1.2.43" - (sources."@joplin/htmlpack-2.6.1" // { + sources."@joplin/fork-htmlparser2-4.1.40" + sources."@joplin/fork-sax-1.2.44" + sources."@joplin/fork-uslug-1.0.5" + (sources."@joplin/htmlpack-2.8.1" // { dependencies = [ sources."fs-extra-10.1.0" ]; }) - sources."@joplin/lib-2.6.3" - (sources."@joplin/renderer-2.6.3" // { + (sources."@joplin/lib-2.8.1" // { + dependencies = [ + sources."q-0.9.7" + sources."tcp-port-used-0.1.2" + ]; + }) + (sources."@joplin/renderer-2.8.1" // { dependencies = [ sources."fs-extra-8.1.0" sources."jsonfile-4.0.0" sources."universalify-0.1.2" - sources."uslug-git+https://github.com/laurent22/uslug.git#emoji-support" ]; }) - (sources."@joplin/turndown-4.0.61" // { + (sources."@joplin/turndown-4.0.62" // { dependencies = [ sources."css-2.2.4" ]; }) - sources."@joplin/turndown-plugin-gfm-1.0.43" + sources."@joplin/turndown-plugin-gfm-1.0.44" (sources."@mapbox/node-pre-gyp-1.0.9" // { dependencies = [ sources."ansi-regex-5.0.1" @@ -104323,6 +104370,7 @@ in ]; }) sources."@tootallnate/once-1.1.2" + sources."@types/nanoid-3.0.0" sources."abab-2.0.6" sources."abbrev-1.1.1" sources."acorn-7.4.1" @@ -104369,7 +104417,7 @@ in sources."async-mutex-0.1.4" sources."asynckit-0.4.0" sources."atob-2.1.2" - (sources."aws-sdk-2.1134.0" // { + (sources."aws-sdk-2.1138.0" // { dependencies = [ sources."sax-1.2.1" sources."uuid-3.3.2" @@ -104541,7 +104589,7 @@ in }) sources."domelementtype-2.3.0" sources."domexception-1.0.1" - sources."domhandler-3.3.0" + sources."domhandler-3.0.0" sources."dompurify-2.3.5" (sources."domutils-2.8.0" // { dependencies = [ @@ -104581,7 +104629,7 @@ in sources."fast-deep-equal-3.1.3" sources."fast-json-stable-stringify-2.1.0" sources."fast-levenshtein-2.0.6" - sources."fast-xml-parser-3.19.0" + sources."fast-xml-parser-3.21.1" sources."fault-1.0.4" sources."file-type-10.11.0" sources."fill-range-7.0.1" @@ -104612,7 +104660,7 @@ in sources."get-stdin-5.0.1" sources."getpass-0.1.7" sources."github-from-package-0.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."graceful-fs-4.2.10" sources."graphlib-2.1.8" @@ -104623,7 +104671,7 @@ in sources."has-flag-4.0.0" sources."has-unicode-2.0.1" sources."he-1.2.0" - sources."highlight.js-11.5.1" + sources."highlight.js-11.1.0" sources."html-encoding-sniffer-1.0.2" sources."html-entities-1.4.0" sources."html-minifier-3.5.21" @@ -104702,6 +104750,7 @@ in sources."is-stream-1.1.0" sources."is-typedarray-1.0.0" sources."is-unc-path-0.1.2" + sources."is-url-1.2.4" sources."is-windows-0.2.0" sources."is-wsl-2.2.0" (sources."is2-0.0.9" // { @@ -105045,6 +105094,7 @@ in ]; }) sources."strip-json-comments-2.0.1" + sources."strnum-1.0.5" sources."stylis-4.1.1" sources."supports-color-7.2.0" sources."symbol-observable-1.2.0" @@ -105061,9 +105111,11 @@ in sources."readable-stream-3.6.0" ]; }) - (sources."tcp-port-used-0.1.2" // { + (sources."tcp-port-used-1.0.2" // { dependencies = [ - sources."q-0.9.7" + sources."debug-4.3.1" + sources."ip-regex-4.3.0" + sources."is2-2.0.7" ]; }) sources."terminal-kit-1.49.4" @@ -105111,7 +105163,6 @@ in ]; }) sources."url-parse-1.5.10" - sources."uslug-git+https://github.com/laurent22/uslug.git#emoji-support" sources."util-deprecate-1.0.2" sources."uuid-3.4.0" sources."valid-url-1.0.9" @@ -105168,7 +105219,7 @@ in sources."config-chain-1.1.13" sources."editorconfig-0.15.3" sources."fs.realpath-1.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."inflight-1.0.6" sources."inherits-2.0.4" sources."ini-1.3.8" @@ -105224,7 +105275,7 @@ in sha512 = "IdQ8ppSo5LKZ9o3M+LKIIK8i00DIe5msDvG3G81Km+1dhy0XrOWD0Ji8H61ElgyEj/O9KRLokgKbAM9XX9CJAg=="; }; dependencies = [ - sources."@babel/parser-7.17.10" + sources."@babel/parser-7.17.12" sources."@types/linkify-it-3.0.2" sources."@types/markdown-it-12.2.3" sources."@types/mdurl-1.0.2" @@ -105239,7 +105290,7 @@ in sources."lodash-4.17.21" sources."markdown-it-12.3.2" sources."markdown-it-anchor-8.6.4" - sources."marked-4.0.15" + sources."marked-4.0.16" sources."mdurl-1.0.1" sources."mkdirp-1.0.4" sources."requizzle-0.2.3" @@ -105287,7 +105338,11 @@ in sources."entities-1.0.0" sources."exit-0.1.2" sources."fs.realpath-1.0.0" - sources."glob-7.2.0" + (sources."glob-7.2.3" // { + dependencies = [ + sources."minimatch-3.1.2" + ]; + }) sources."htmlparser2-3.8.3" sources."inflight-1.0.6" sources."inherits-2.0.4" @@ -105657,7 +105712,7 @@ in sources."xdg-basedir-4.0.0" sources."y18n-5.0.8" sources."yallist-4.0.0" - sources."yargs-17.5.0" + sources."yargs-17.5.1" sources."yargs-parser-21.0.1" ]; buildInputs = globalBuildInputs; @@ -106333,7 +106388,7 @@ in sources."chardet-0.7.0" sources."clean-stack-3.0.1" sources."cli-cursor-3.1.0" - sources."cli-progress-3.11.0" + sources."cli-progress-3.11.1" (sources."cli-ux-5.6.7" // { dependencies = [ sources."supports-color-8.1.1" @@ -106530,17 +106585,17 @@ in karma = nodeEnv.buildNodePackage { name = "karma"; packageName = "karma"; - version = "6.3.19"; + version = "6.3.20"; src = fetchurl { - url = "https://registry.npmjs.org/karma/-/karma-6.3.19.tgz"; - sha512 = "NDhWckzES/Y9xMiddyU1RzaKL76/scCsu8Mp0vR0Z3lQRvC3p72+Ab4ppoxs36S9tyPNX5V48yvaV++RNEBPZw=="; + url = "https://registry.npmjs.org/karma/-/karma-6.3.20.tgz"; + sha512 = "HRNQhMuKOwKpjYlWiJP0DUrJOh+QjaI/DTaD8b9rEm4Il3tJ8MijutVZH4ts10LuUFst/CedwTS6vieCN8yTSw=="; }; dependencies = [ sources."@colors/colors-1.5.0" sources."@types/component-emitter-1.2.11" sources."@types/cookie-0.4.1" sources."@types/cors-2.8.12" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."accepts-1.3.8" sources."ansi-regex-5.0.1" sources."ansi-styles-4.3.0" @@ -106564,7 +106619,7 @@ in sources."cookie-0.4.2" sources."cors-2.8.5" sources."custom-event-1.0.1" - sources."date-format-4.0.9" + sources."date-format-4.0.10" sources."debug-2.6.9" sources."depd-2.0.0" sources."destroy-1.2.0" @@ -106600,7 +106655,7 @@ in sources."function-bind-1.1.1" sources."get-caller-file-2.0.5" sources."get-intrinsic-1.1.1" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."graceful-fs-4.2.10" sources."has-1.0.3" @@ -106618,7 +106673,7 @@ in sources."isbinaryfile-4.0.10" sources."jsonfile-6.1.0" sources."lodash-4.17.21" - (sources."log4js-6.4.6" // { + (sources."log4js-6.4.7" // { dependencies = [ sources."debug-4.3.4" sources."ms-2.1.2" @@ -106653,7 +106708,7 @@ in sources."safer-buffer-2.1.2" sources."setprototypeof-1.2.0" sources."side-channel-1.0.4" - (sources."socket.io-4.5.0" // { + (sources."socket.io-4.5.1" // { dependencies = [ sources."debug-4.3.4" sources."ms-2.1.2" @@ -106668,7 +106723,7 @@ in }) sources."source-map-0.6.1" sources."statuses-2.0.1" - (sources."streamroller-3.0.8" // { + (sources."streamroller-3.0.9" // { dependencies = [ sources."debug-4.3.4" sources."ms-2.1.2" @@ -106716,12 +106771,16 @@ in sources."@babel/cli-7.17.10" sources."@babel/code-frame-7.16.7" sources."@babel/compat-data-7.17.10" - (sources."@babel/core-7.17.10" // { + (sources."@babel/core-7.17.12" // { dependencies = [ sources."semver-6.3.0" ]; }) - sources."@babel/generator-7.17.10" + (sources."@babel/generator-7.17.12" // { + dependencies = [ + sources."@jridgewell/gen-mapping-0.3.1" + ]; + }) sources."@babel/helper-annotate-as-pure-7.16.7" (sources."@babel/helper-compilation-targets-7.17.10" // { dependencies = [ @@ -106732,22 +106791,22 @@ in sources."@babel/helper-function-name-7.17.9" sources."@babel/helper-hoist-variables-7.16.7" sources."@babel/helper-module-imports-7.16.7" - sources."@babel/helper-module-transforms-7.17.7" - sources."@babel/helper-plugin-utils-7.16.7" + sources."@babel/helper-module-transforms-7.17.12" + sources."@babel/helper-plugin-utils-7.17.12" sources."@babel/helper-simple-access-7.17.7" sources."@babel/helper-split-export-declaration-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" sources."@babel/helper-validator-option-7.16.7" sources."@babel/helpers-7.17.9" - sources."@babel/highlight-7.17.9" + sources."@babel/highlight-7.17.12" sources."@babel/node-7.17.10" - sources."@babel/parser-7.17.10" - sources."@babel/plugin-syntax-jsx-7.16.7" - sources."@babel/plugin-transform-react-jsx-7.17.3" + sources."@babel/parser-7.17.12" + sources."@babel/plugin-syntax-jsx-7.17.12" + sources."@babel/plugin-transform-react-jsx-7.17.12" sources."@babel/register-7.17.7" sources."@babel/template-7.16.7" - sources."@babel/traverse-7.17.10" - sources."@babel/types-7.17.10" + sources."@babel/traverse-7.17.12" + sources."@babel/types-7.17.12" sources."@jridgewell/gen-mapping-0.1.1" sources."@jridgewell/resolve-uri-3.0.7" sources."@jridgewell/set-array-1.1.1" @@ -106758,7 +106817,7 @@ in sources."@nodelib/fs.walk-1.2.8" sources."@openpgp/hkp-client-0.0.2" sources."@openpgp/wkd-client-0.0.3" - sources."@peculiar/asn1-schema-2.1.6" + sources."@peculiar/asn1-schema-2.1.7" sources."@peculiar/json-schema-1.1.12" sources."@peculiar/webcrypto-1.4.0" sources."@tootallnate/once-1.1.2" @@ -106799,7 +106858,7 @@ in }) sources."acorn-walk-7.2.0" sources."agent-base-6.0.2" - sources."ansi-colors-4.1.1" + sources."ansi-colors-4.1.3" sources."ansi-regex-2.1.1" sources."ansi-styles-3.2.1" sources."aproba-1.2.0" @@ -106812,7 +106871,7 @@ in sources."array-flatten-1.1.1" sources."array-union-2.1.0" sources."asn1.js-5.4.1" - sources."asn1js-3.0.1" + sources."asn1js-3.0.3" sources."asynckit-0.4.0" sources."at-least-node-1.0.0" sources."axios-0.25.0" @@ -106839,7 +106898,7 @@ in sources."buffer-from-1.1.2" sources."bytes-3.1.2" sources."call-bind-1.0.2" - sources."caniuse-lite-1.0.30001340" + sources."caniuse-lite-1.0.30001341" sources."chalk-2.4.2" sources."chardet-1.4.0" sources."chownr-1.1.4" @@ -106912,7 +106971,7 @@ in sources."encodeurl-1.0.2" sources."end-of-stream-1.4.4" sources."enquirer-2.3.6" - sources."es-abstract-1.20.0" + sources."es-abstract-1.20.1" sources."es-to-primitive-1.2.1" sources."escalade-3.1.1" sources."escape-html-1.0.3" @@ -106976,7 +107035,7 @@ in sources."get-intrinsic-1.1.1" sources."get-symbol-description-1.0.0" sources."github-from-package-0.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."globals-11.12.0" (sources."globby-11.1.0" // { @@ -107113,21 +107172,20 @@ in sources."picomatch-2.3.1" sources."pify-4.0.1" sources."pirates-4.0.5" - (sources."pkg-5.6.0" // { + (sources."pkg-5.7.0" // { dependencies = [ - sources."@babel/parser-7.16.2" - sources."@babel/types-7.16.0" + sources."@babel/parser-7.17.10" + sources."@babel/types-7.17.10" sources."ansi-styles-4.3.0" sources."chalk-4.1.2" sources."color-convert-2.0.1" sources."color-name-1.1.4" sources."has-flag-4.0.0" sources."supports-color-7.2.0" - sources."tslib-2.3.1" ]; }) sources."pkg-dir-3.0.0" - (sources."pkg-fetch-3.3.0" // { + (sources."pkg-fetch-3.4.1" // { dependencies = [ sources."ansi-styles-4.3.0" sources."chalk-4.1.2" @@ -107316,7 +107374,7 @@ in sources."fs.realpath-1.0.0" sources."function-bind-1.1.1" sources."get-intrinsic-1.1.1" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-3.1.0" sources."glob-stream-6.1.0" sources."graceful-fs-4.2.10" @@ -107462,7 +107520,7 @@ in sources."get-caller-file-1.0.3" sources."get-stream-4.1.0" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."har-schema-2.0.0" sources."har-validator-5.1.5" sources."has-flag-3.0.0" @@ -107720,7 +107778,7 @@ in sources."fs.realpath-1.0.0" sources."get-caller-file-2.0.5" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."har-schema-2.0.0" sources."har-validator-5.1.5" sources."has-flag-3.0.0" @@ -107891,7 +107949,7 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -108156,7 +108214,7 @@ in sources."envinfo-7.8.1" sources."err-code-2.0.3" sources."error-ex-1.3.2" - sources."es-abstract-1.20.0" + sources."es-abstract-1.20.1" sources."es-to-primitive-1.2.1" sources."escalade-3.1.1" sources."escape-string-regexp-1.0.5" @@ -108222,7 +108280,7 @@ in sources."git-up-4.0.5" sources."git-url-parse-11.6.0" sources."gitconfiglocal-1.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."globby-11.1.0" sources."graceful-fs-4.2.10" @@ -109577,7 +109635,7 @@ in sources."@types/commander-2.12.2" sources."@types/diff-3.5.5" sources."@types/get-stdin-5.0.1" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."commander-2.20.3" sources."diff-3.5.0" sources."get-stdin-5.0.1" @@ -109607,7 +109665,7 @@ in sources."brace-expansion-1.1.11" sources."concat-map-0.0.1" sources."fs.realpath-1.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."inflight-1.0.6" sources."inherits-2.0.4" sources."minimatch-3.1.2" @@ -109834,7 +109892,11 @@ in sources."entities-2.1.0" sources."fs.realpath-1.0.0" sources."get-stdin-9.0.0" - sources."glob-7.2.0" + (sources."glob-7.2.3" // { + dependencies = [ + sources."minimatch-3.1.2" + ]; + }) sources."ignore-5.2.0" sources."inflight-1.0.6" sources."inherits-2.0.4" @@ -109956,7 +110018,7 @@ in sources."link-check-5.1.0" sources."lodash-4.17.21" sources."markdown-link-extractor-3.0.2" - sources."marked-4.0.15" + sources."marked-4.0.16" sources."ms-2.1.3" sources."needle-3.1.0" sources."nth-check-2.0.1" @@ -110217,7 +110279,7 @@ in sources."generate-function-2.3.1" sources."generate-object-property-1.2.0" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."globals-9.18.0" sources."glogg-1.0.2" sources."graceful-fs-4.2.10" @@ -110453,14 +110515,14 @@ in "@mermaid-js/mermaid-cli" = nodeEnv.buildNodePackage { name = "_at_mermaid-js_slash_mermaid-cli"; packageName = "@mermaid-js/mermaid-cli"; - version = "9.0.3"; + version = "9.1.2"; src = fetchurl { - url = "https://registry.npmjs.org/@mermaid-js/mermaid-cli/-/mermaid-cli-9.0.3.tgz"; - sha512 = "Frh3pInE16H3GA9J1/uYIHIAaqB6nJBbwU5XHCbVoyPs+LOU91sVM6fTI5SZYqyn8intu1cL1hfu6z74G7Lorw=="; + url = "https://registry.npmjs.org/@mermaid-js/mermaid-cli/-/mermaid-cli-9.1.2.tgz"; + sha512 = "ZiCHQEXn8P4iQpCpobUZwofcncg3sE282cVb7+bY9JIDlOg+DF9B35cwPYbXnHX3gsmD0zybfYWmnaNmKLnemA=="; }; dependencies = [ sources."@braintree/sanitize-url-6.0.0" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/yauzl-2.10.0" sources."agent-base-6.0.2" sources."ansi-styles-4.3.0" @@ -110553,7 +110615,7 @@ in }) sources."debug-4.3.4" sources."delaunator-5.0.0" - sources."devtools-protocol-0.0.981744" + sources."devtools-protocol-0.0.982423" sources."dompurify-2.3.6" sources."end-of-stream-1.4.4" sources."extract-zip-2.0.1" @@ -110562,7 +110624,7 @@ in sources."fs-constants-1.0.0" sources."fs.realpath-1.0.0" sources."get-stream-5.2.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."graphlib-2.1.8" sources."has-flag-4.0.0" sources."https-proxy-agent-5.0.1" @@ -110591,7 +110653,7 @@ in sources."progress-2.0.3" sources."proxy-from-env-1.1.0" sources."pump-3.0.0" - sources."puppeteer-13.7.0" + sources."puppeteer-14.1.0" sources."readable-stream-3.6.0" sources."rimraf-3.0.2" sources."robust-predicates-3.0.1" @@ -110610,7 +110672,7 @@ in sources."webidl-conversions-3.0.1" sources."whatwg-url-5.0.0" sources."wrappy-1.0.2" - sources."ws-8.5.0" + sources."ws-8.6.0" sources."yauzl-2.10.0" ]; buildInputs = globalBuildInputs; @@ -110890,7 +110952,7 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -110940,7 +111002,7 @@ in sources."@types/istanbul-lib-coverage-2.0.4" sources."@types/istanbul-lib-report-3.0.0" sources."@types/istanbul-reports-3.0.1" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/stack-utils-2.0.1" sources."@types/yargs-16.0.4" sources."@types/yargs-parser-21.0.0" @@ -111035,7 +111097,7 @@ in sources."get-caller-file-2.0.5" sources."get-stream-4.1.0" sources."github-from-package-0.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."global-dirs-3.0.0" sources."got-9.6.0" sources."graceful-fs-4.2.10" @@ -111342,11 +111404,11 @@ in sources."are-we-there-yet-3.0.0" sources."balanced-match-1.0.2" sources."brace-expansion-1.1.11" - (sources."cacache-16.0.7" // { + (sources."cacache-16.1.0" // { dependencies = [ sources."brace-expansion-2.0.1" - sources."glob-8.0.2" - sources."minimatch-5.0.1" + sources."glob-8.0.3" + sources."minimatch-5.1.0" ]; }) sources."chownr-2.0.0" @@ -111364,7 +111426,7 @@ in sources."fs-minipass-2.1.0" sources."fs.realpath-1.0.0" sources."gauge-4.0.4" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."graceful-fs-4.2.10" sources."has-unicode-2.0.1" sources."http-cache-semantics-4.1.0" @@ -111382,7 +111444,7 @@ in sources."is-lambda-1.0.1" sources."isexe-2.0.0" sources."lru-cache-7.10.1" - sources."make-fetch-happen-10.1.3" + sources."make-fetch-happen-10.1.4" sources."minimatch-3.1.2" sources."minipass-3.1.6" sources."minipass-collect-1.0.2" @@ -111610,7 +111672,7 @@ in sources."negotiator-0.6.3" (sources."node-pre-gyp-0.6.39" // { dependencies = [ - sources."glob-7.2.0" + sources."glob-7.2.3" sources."rimraf-2.7.1" sources."semver-5.7.1" ]; @@ -111710,7 +111772,7 @@ in sources."tar-2.2.2" (sources."tar-pack-3.4.1" // { dependencies = [ - sources."glob-7.2.0" + sources."glob-7.2.3" sources."rimraf-2.7.1" ]; }) @@ -111797,7 +111859,7 @@ in sources."fs-minipass-1.2.7" sources."fs.realpath-1.0.0" sources."gauge-2.7.4" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."has-unicode-2.0.1" sources."iconv-lite-0.4.24" sources."ignore-walk-3.0.4" @@ -111894,7 +111956,7 @@ in sources."@types/http-cache-semantics-4.0.1" sources."@types/json-buffer-3.0.0" sources."@types/keyv-3.1.4" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/responselike-1.0.0" sources."abbrev-1.1.1" sources."accepts-1.3.8" @@ -111907,7 +111969,7 @@ in ]; }) sources."ajv-8.10.0" - sources."ansi-colors-4.1.1" + sources."ansi-colors-4.1.3" sources."ansi-regex-5.0.1" sources."append-field-1.0.0" sources."aproba-2.0.0" @@ -112033,7 +112095,7 @@ in sources."fs.realpath-1.0.0" sources."gauge-3.0.2" sources."get-stream-5.2.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."got-11.8.3" sources."graceful-fs-4.2.10" sources."has-unicode-2.0.1" @@ -112075,7 +112137,7 @@ in sources."universalify-2.0.0" ]; }) - sources."keyv-4.2.8" + sources."keyv-4.2.9" sources."leven-2.1.0" sources."lodash.clonedeep-4.5.0" sources."lowercase-keys-2.0.0" @@ -112312,7 +112374,7 @@ in sources."function-bind-1.1.1" sources."gauge-2.7.4" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."graceful-fs-4.2.10" sources."har-schema-2.0.0" sources."har-validator-5.1.5" @@ -112623,7 +112685,7 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -112649,7 +112711,7 @@ in sources."@types/json-buffer-3.0.0" sources."@types/keyv-3.1.4" sources."@types/minimist-1.2.2" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/normalize-package-data-2.4.1" sources."@types/parse-json-4.0.0" sources."@types/responselike-1.0.0" @@ -112725,7 +112787,7 @@ in sources."decompress-response-5.0.0" sources."deep-extend-0.6.0" sources."defer-to-connect-2.0.1" - sources."del-6.0.0" + sources."del-6.1.0" sources."dir-glob-3.0.1" sources."dot-prop-6.0.1" sources."duplexer3-0.1.4" @@ -112750,7 +112812,7 @@ in sources."function-bind-1.1.1" sources."get-stream-6.0.1" sources."github-url-from-git-1.5.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."global-dirs-2.1.0" sources."globby-11.1.0" @@ -112853,7 +112915,7 @@ in sources."js-tokens-4.0.0" sources."json-buffer-3.0.1" sources."json-parse-even-better-errors-2.3.1" - sources."keyv-4.2.8" + sources."keyv-4.2.9" sources."kind-of-6.0.3" sources."latest-version-5.1.0" sources."lines-and-columns-1.2.4" @@ -113162,10 +113224,10 @@ in npm-check-updates = nodeEnv.buildNodePackage { name = "npm-check-updates"; packageName = "npm-check-updates"; - version = "12.5.11"; + version = "13.0.1"; src = fetchurl { - url = "https://registry.npmjs.org/npm-check-updates/-/npm-check-updates-12.5.11.tgz"; - sha512 = "uS3yYYK/F1VvZlJRymuCkq+MY2R7v/WlORo5WPUTYx+1OwkqeDMC/CEEGfCN7ATwT2M+JxVVKk9Gq/TGiZjJOw=="; + url = "https://registry.npmjs.org/npm-check-updates/-/npm-check-updates-13.0.1.tgz"; + sha512 = "DU0/pDWrc4kTgc9V5MtM7RPoUrMBfDzSxcCBt+hJjSyxQ47ULrjWhVwpNpUmHCAUfHYdzwYKGW/Z65/vKwWNag=="; }; dependencies = [ sources."@gar/promisify-1.1.3" @@ -113199,9 +113261,9 @@ in sources."braces-3.0.2" sources."buffer-from-1.1.2" sources."builtins-5.0.1" - (sources."cacache-16.0.7" // { + (sources."cacache-16.1.0" // { dependencies = [ - sources."glob-8.0.2" + sources."glob-8.0.3" ]; }) (sources."cacheable-request-6.1.0" // { @@ -113256,7 +113318,7 @@ in sources."gauge-4.0.4" sources."get-stdin-8.0.0" sources."get-stream-4.1.0" - (sources."glob-7.2.0" // { + (sources."glob-7.2.3" // { dependencies = [ sources."brace-expansion-1.1.11" sources."minimatch-3.1.2" @@ -113334,11 +113396,11 @@ in sources."semver-6.3.0" ]; }) - sources."make-fetch-happen-10.1.3" + sources."make-fetch-happen-10.1.4" sources."merge2-1.4.1" sources."micromatch-4.0.5" sources."mimic-response-1.0.1" - sources."minimatch-5.0.1" + sources."minimatch-5.1.0" sources."minimist-1.2.6" sources."minipass-3.1.6" sources."minipass-collect-1.0.2" @@ -113361,7 +113423,7 @@ in sources."npm-package-arg-9.0.2" (sources."npm-packlist-5.0.3" // { dependencies = [ - sources."glob-8.0.2" + sources."glob-8.0.3" ]; }) sources."npm-pick-manifest-7.0.1" @@ -113378,7 +113440,7 @@ in sources."semver-6.3.0" ]; }) - sources."pacote-13.3.0" + sources."pacote-13.4.0" sources."parse-github-url-1.0.2" sources."path-exists-4.0.0" sources."path-is-absolute-1.0.1" @@ -113397,7 +113459,7 @@ in sources."rc-config-loader-4.1.0" (sources."read-package-json-5.0.1" // { dependencies = [ - sources."glob-8.0.2" + sources."glob-8.0.3" ]; }) sources."read-package-json-fast-2.0.3" @@ -113465,7 +113527,7 @@ in sources."write-file-atomic-3.0.3" sources."xdg-basedir-4.0.0" sources."yallist-4.0.0" - sources."yaml-1.10.2" + sources."yaml-2.1.0" sources."yocto-queue-0.1.0" ]; buildInputs = globalBuildInputs; @@ -113627,13 +113689,17 @@ in sources."@ampproject/remapping-2.2.0" sources."@babel/code-frame-7.16.7" sources."@babel/compat-data-7.17.10" - (sources."@babel/core-7.17.10" // { + (sources."@babel/core-7.17.12" // { dependencies = [ sources."json5-2.2.1" sources."semver-6.3.0" ]; }) - sources."@babel/generator-7.17.10" + (sources."@babel/generator-7.17.12" // { + dependencies = [ + sources."@jridgewell/gen-mapping-0.3.1" + ]; + }) sources."@babel/helper-annotate-as-pure-7.16.7" sources."@babel/helper-builder-binary-assignment-operator-visitor-7.16.7" (sources."@babel/helper-compilation-targets-7.17.10" // { @@ -113641,8 +113707,8 @@ in sources."semver-6.3.0" ]; }) - sources."@babel/helper-create-class-features-plugin-7.17.9" - sources."@babel/helper-create-regexp-features-plugin-7.17.0" + sources."@babel/helper-create-class-features-plugin-7.17.12" + sources."@babel/helper-create-regexp-features-plugin-7.17.12" (sources."@babel/helper-define-polyfill-provider-0.3.1" // { dependencies = [ sources."semver-6.3.0" @@ -113654,9 +113720,9 @@ in sources."@babel/helper-hoist-variables-7.16.7" sources."@babel/helper-member-expression-to-functions-7.17.7" sources."@babel/helper-module-imports-7.16.7" - sources."@babel/helper-module-transforms-7.17.7" + sources."@babel/helper-module-transforms-7.17.12" sources."@babel/helper-optimise-call-expression-7.16.7" - sources."@babel/helper-plugin-utils-7.16.7" + sources."@babel/helper-plugin-utils-7.17.12" sources."@babel/helper-remap-async-to-generator-7.16.8" sources."@babel/helper-replace-supers-7.16.7" sources."@babel/helper-simple-access-7.17.7" @@ -113666,33 +113732,33 @@ in sources."@babel/helper-validator-option-7.16.7" sources."@babel/helper-wrap-function-7.16.8" sources."@babel/helpers-7.17.9" - sources."@babel/highlight-7.17.9" - sources."@babel/parser-7.17.10" - sources."@babel/plugin-bugfix-safari-id-destructuring-collision-in-function-expression-7.16.7" - sources."@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.16.7" - sources."@babel/plugin-proposal-async-generator-functions-7.16.8" - sources."@babel/plugin-proposal-class-properties-7.16.7" - sources."@babel/plugin-proposal-class-static-block-7.17.6" + sources."@babel/highlight-7.17.12" + sources."@babel/parser-7.17.12" + sources."@babel/plugin-bugfix-safari-id-destructuring-collision-in-function-expression-7.17.12" + sources."@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.17.12" + sources."@babel/plugin-proposal-async-generator-functions-7.17.12" + sources."@babel/plugin-proposal-class-properties-7.17.12" + sources."@babel/plugin-proposal-class-static-block-7.17.12" sources."@babel/plugin-proposal-dynamic-import-7.16.7" - sources."@babel/plugin-proposal-export-namespace-from-7.16.7" - sources."@babel/plugin-proposal-json-strings-7.16.7" - sources."@babel/plugin-proposal-logical-assignment-operators-7.16.7" - sources."@babel/plugin-proposal-nullish-coalescing-operator-7.16.7" + sources."@babel/plugin-proposal-export-namespace-from-7.17.12" + sources."@babel/plugin-proposal-json-strings-7.17.12" + sources."@babel/plugin-proposal-logical-assignment-operators-7.17.12" + sources."@babel/plugin-proposal-nullish-coalescing-operator-7.17.12" sources."@babel/plugin-proposal-numeric-separator-7.16.7" - sources."@babel/plugin-proposal-object-rest-spread-7.17.3" + sources."@babel/plugin-proposal-object-rest-spread-7.17.12" sources."@babel/plugin-proposal-optional-catch-binding-7.16.7" - sources."@babel/plugin-proposal-optional-chaining-7.16.7" - sources."@babel/plugin-proposal-private-methods-7.16.11" - sources."@babel/plugin-proposal-private-property-in-object-7.16.7" - sources."@babel/plugin-proposal-unicode-property-regex-7.16.7" + sources."@babel/plugin-proposal-optional-chaining-7.17.12" + sources."@babel/plugin-proposal-private-methods-7.17.12" + sources."@babel/plugin-proposal-private-property-in-object-7.17.12" + sources."@babel/plugin-proposal-unicode-property-regex-7.17.12" sources."@babel/plugin-syntax-async-generators-7.8.4" sources."@babel/plugin-syntax-class-properties-7.12.13" sources."@babel/plugin-syntax-class-static-block-7.14.5" sources."@babel/plugin-syntax-dynamic-import-7.8.3" sources."@babel/plugin-syntax-export-namespace-from-7.8.3" - sources."@babel/plugin-syntax-flow-7.16.7" + sources."@babel/plugin-syntax-flow-7.17.12" sources."@babel/plugin-syntax-json-strings-7.8.3" - sources."@babel/plugin-syntax-jsx-7.16.7" + sources."@babel/plugin-syntax-jsx-7.17.12" sources."@babel/plugin-syntax-logical-assignment-operators-7.10.4" sources."@babel/plugin-syntax-nullish-coalescing-operator-7.8.3" sources."@babel/plugin-syntax-numeric-separator-7.10.4" @@ -113701,41 +113767,41 @@ in sources."@babel/plugin-syntax-optional-chaining-7.8.3" sources."@babel/plugin-syntax-private-property-in-object-7.14.5" sources."@babel/plugin-syntax-top-level-await-7.14.5" - sources."@babel/plugin-transform-arrow-functions-7.16.7" - sources."@babel/plugin-transform-async-to-generator-7.16.8" + sources."@babel/plugin-transform-arrow-functions-7.17.12" + sources."@babel/plugin-transform-async-to-generator-7.17.12" sources."@babel/plugin-transform-block-scoped-functions-7.16.7" - sources."@babel/plugin-transform-block-scoping-7.16.7" - sources."@babel/plugin-transform-classes-7.16.7" - sources."@babel/plugin-transform-computed-properties-7.16.7" - sources."@babel/plugin-transform-destructuring-7.17.7" + sources."@babel/plugin-transform-block-scoping-7.17.12" + sources."@babel/plugin-transform-classes-7.17.12" + sources."@babel/plugin-transform-computed-properties-7.17.12" + sources."@babel/plugin-transform-destructuring-7.17.12" sources."@babel/plugin-transform-dotall-regex-7.16.7" - sources."@babel/plugin-transform-duplicate-keys-7.16.7" + sources."@babel/plugin-transform-duplicate-keys-7.17.12" sources."@babel/plugin-transform-exponentiation-operator-7.16.7" - sources."@babel/plugin-transform-flow-strip-types-7.16.7" - sources."@babel/plugin-transform-for-of-7.16.7" + sources."@babel/plugin-transform-flow-strip-types-7.17.12" + sources."@babel/plugin-transform-for-of-7.17.12" sources."@babel/plugin-transform-function-name-7.16.7" - sources."@babel/plugin-transform-literals-7.16.7" + sources."@babel/plugin-transform-literals-7.17.12" sources."@babel/plugin-transform-member-expression-literals-7.16.7" - sources."@babel/plugin-transform-modules-amd-7.16.7" - sources."@babel/plugin-transform-modules-commonjs-7.17.9" - sources."@babel/plugin-transform-modules-systemjs-7.17.8" - sources."@babel/plugin-transform-modules-umd-7.16.7" - sources."@babel/plugin-transform-named-capturing-groups-regex-7.17.10" - sources."@babel/plugin-transform-new-target-7.16.7" + sources."@babel/plugin-transform-modules-amd-7.17.12" + sources."@babel/plugin-transform-modules-commonjs-7.17.12" + sources."@babel/plugin-transform-modules-systemjs-7.17.12" + sources."@babel/plugin-transform-modules-umd-7.17.12" + sources."@babel/plugin-transform-named-capturing-groups-regex-7.17.12" + sources."@babel/plugin-transform-new-target-7.17.12" sources."@babel/plugin-transform-object-super-7.16.7" - sources."@babel/plugin-transform-parameters-7.16.7" + sources."@babel/plugin-transform-parameters-7.17.12" sources."@babel/plugin-transform-property-literals-7.16.7" - sources."@babel/plugin-transform-react-jsx-7.17.3" + sources."@babel/plugin-transform-react-jsx-7.17.12" sources."@babel/plugin-transform-regenerator-7.17.9" - sources."@babel/plugin-transform-reserved-words-7.16.7" + sources."@babel/plugin-transform-reserved-words-7.17.12" sources."@babel/plugin-transform-shorthand-properties-7.16.7" - sources."@babel/plugin-transform-spread-7.16.7" + sources."@babel/plugin-transform-spread-7.17.12" sources."@babel/plugin-transform-sticky-regex-7.16.7" - sources."@babel/plugin-transform-template-literals-7.16.7" - sources."@babel/plugin-transform-typeof-symbol-7.16.7" + sources."@babel/plugin-transform-template-literals-7.17.12" + sources."@babel/plugin-transform-typeof-symbol-7.17.12" sources."@babel/plugin-transform-unicode-escapes-7.16.7" sources."@babel/plugin-transform-unicode-regex-7.16.7" - (sources."@babel/preset-env-7.17.10" // { + (sources."@babel/preset-env-7.17.12" // { dependencies = [ sources."semver-6.3.0" ]; @@ -113743,8 +113809,8 @@ in sources."@babel/preset-modules-0.1.5" sources."@babel/runtime-7.17.9" sources."@babel/template-7.16.7" - sources."@babel/traverse-7.17.10" - sources."@babel/types-7.17.10" + sources."@babel/traverse-7.17.12" + sources."@babel/types-7.17.12" sources."@iarna/toml-2.2.5" sources."@jridgewell/gen-mapping-0.1.1" sources."@jridgewell/resolve-uri-3.0.7" @@ -113871,7 +113937,7 @@ in sources."caller-path-2.0.0" sources."callsites-2.0.0" sources."caniuse-api-3.0.0" - sources."caniuse-lite-1.0.30001340" + sources."caniuse-lite-1.0.30001341" sources."caseless-0.12.0" sources."chalk-2.4.2" sources."chokidar-2.1.8" @@ -114018,7 +114084,7 @@ in sources."entities-2.2.0" sources."envinfo-7.8.1" sources."error-ex-1.3.2" - (sources."es-abstract-1.20.0" // { + (sources."es-abstract-1.20.1" // { dependencies = [ sources."object-inspect-1.12.0" ]; @@ -114073,7 +114139,7 @@ in sources."get-symbol-description-1.0.0" sources."get-value-2.0.6" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" (sources."glob-parent-3.1.0" // { dependencies = [ sources."is-glob-3.1.0" @@ -114660,7 +114726,7 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."chalk-2.4.2" ]; @@ -114751,7 +114817,7 @@ in sources."browserslist-4.20.3" sources."buffer-from-1.1.2" sources."callsites-3.1.0" - sources."caniuse-lite-1.0.30001340" + sources."caniuse-lite-1.0.30001341" (sources."chalk-4.1.2" // { dependencies = [ sources."ansi-styles-4.3.0" @@ -114979,7 +115045,7 @@ in sources."get-caller-file-2.0.5" sources."get-intrinsic-1.1.1" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."graceful-fs-4.2.10" sources."handlebars-4.7.7" sources."har-schema-2.0.0" @@ -115184,7 +115250,7 @@ in sources."find-yarn-workspace-root-2.0.0" sources."fs-extra-7.0.1" sources."fs.realpath-1.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."graceful-fs-4.2.10" sources."has-flag-3.0.0" sources."inflight-1.0.6" @@ -115251,7 +115317,7 @@ in sources."array-flatten-2.1.2" sources."balanced-match-1.0.2" sources."base64-js-0.0.8" - sources."bencode-2.0.2" + sources."bencode-2.0.3" sources."bep53-range-1.1.1" sources."big-integer-1.6.51" sources."bitfield-0.1.0" @@ -115330,7 +115396,7 @@ in sources."get-browser-rtc-1.1.0" sources."get-intrinsic-1.1.1" sources."get-stdin-4.0.1" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."graceful-fs-4.2.10" sources."has-1.0.3" sources."has-ansi-2.0.0" @@ -115694,7 +115760,7 @@ in sources."get-browser-rtc-1.1.0" sources."get-intrinsic-1.1.1" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."graceful-fs-4.2.10" sources."har-schema-2.0.0" sources."har-validator-5.1.5" @@ -115735,7 +115801,7 @@ in }) (sources."k-rpc-socket-1.11.1" // { dependencies = [ - sources."bencode-2.0.2" + sources."bencode-2.0.3" ]; }) (sources."lazystream-1.0.1" // { @@ -115942,15 +116008,15 @@ in pkg = nodeEnv.buildNodePackage { name = "pkg"; packageName = "pkg"; - version = "5.6.0"; + version = "5.7.0"; src = fetchurl { - url = "https://registry.npmjs.org/pkg/-/pkg-5.6.0.tgz"; - sha512 = "mHrAVSQWmHA41RnUmRpC7pK9lNnMfdA16CF3cqOI22a8LZxOQzF7M8YWtA2nfs+d7I0MTDXOtkDsAsFXeCpYjg=="; + url = "https://registry.npmjs.org/pkg/-/pkg-5.7.0.tgz"; + sha512 = "PTiAjNq/CGAtK5qUBR6pjheqnipTFjeecgSgIKEcAOJA4GpmZeOZC8pMOoT0rfes5vHsmcFo7wbSRTAmXQurrg=="; }; dependencies = [ sources."@babel/helper-validator-identifier-7.16.7" - sources."@babel/parser-7.16.2" - sources."@babel/types-7.16.0" + sources."@babel/parser-7.17.10" + sources."@babel/types-7.17.10" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" @@ -116058,7 +116124,7 @@ in sources."path-parse-1.0.7" sources."path-type-4.0.0" sources."picomatch-2.3.1" - sources."pkg-fetch-3.3.0" + sources."pkg-fetch-3.4.1" sources."prebuild-install-6.1.4" sources."prelude-ls-1.1.2" sources."process-nextick-args-2.0.1" @@ -116095,7 +116161,6 @@ in sources."to-fast-properties-2.0.0" sources."to-regex-range-5.0.1" sources."tr46-0.0.3" - sources."tslib-2.3.1" sources."tunnel-agent-0.6.0" sources."type-check-0.3.2" sources."universalify-2.0.0" @@ -116167,7 +116232,7 @@ in sources."agent-base-6.0.2" sources."amp-0.3.1" sources."amp-message-0.1.2" - sources."ansi-colors-4.1.1" + sources."ansi-colors-4.1.3" sources."ansi-styles-4.3.0" sources."anymatch-3.1.2" (sources."argparse-1.0.10" // { @@ -116231,7 +116296,7 @@ in sources."get-uri-3.0.2" sources."git-node-fs-1.0.0" sources."git-sha1-0.1.2" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."graceful-fs-4.2.10" sources."has-1.0.3" @@ -116362,10 +116427,10 @@ in pnpm = nodeEnv.buildNodePackage { name = "pnpm"; packageName = "pnpm"; - version = "7.1.0"; + version = "7.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/pnpm/-/pnpm-7.1.0.tgz"; - sha512 = "iT2Hk2jycfh8NXoEnwpg7oCNMwsMlheSR9QAgkhWtRHvjfAAtp0HsKEOA62ILoAwbvv/ea8Ph5lTQLsGQJRq+w=="; + url = "https://registry.npmjs.org/pnpm/-/pnpm-7.1.1.tgz"; + sha512 = "RdWWK/qD3QUf8LtBJ5MgD3CHpFcHuO9yNz+/0RR8GDdu0tI1TnBSmOTxkUGWxa7AakWZKcOtDAmLgi++aKbLng=="; }; buildInputs = globalBuildInputs; meta = { @@ -116408,10 +116473,10 @@ in postcss = nodeEnv.buildNodePackage { name = "postcss"; packageName = "postcss"; - version = "8.4.13"; + version = "8.4.14"; src = fetchurl { - url = "https://registry.npmjs.org/postcss/-/postcss-8.4.13.tgz"; - sha512 = "jtL6eTBrza5MPzy8oJLFuUscHDXTV5KcLlqAWHl5q5WYRfnNRGSmOZmOZ1T6Gy7A99mOZfqungmZMpMmCVJ8ZA=="; + url = "https://registry.npmjs.org/postcss/-/postcss-8.4.14.tgz"; + sha512 = "E398TUmfAYFPBSdzgeieK2Y1+1cpdxJx8yXbK/m57nRhKSmk1GB2tO4lbLBtlkfPQTDKfe4Xqv1ASWPpayPEig=="; }; dependencies = [ sources."nanoid-3.3.4" @@ -116497,7 +116562,7 @@ in sources."wrap-ansi-7.0.0" sources."y18n-5.0.8" sources."yaml-1.10.2" - sources."yargs-17.5.0" + sources."yargs-17.5.1" sources."yargs-parser-21.0.1" ]; buildInputs = globalBuildInputs; @@ -116733,7 +116798,11 @@ in sources."concat-map-0.0.1" sources."fs.realpath-1.0.0" sources."gaze-1.1.3" - sources."glob-7.2.0" + (sources."glob-7.2.3" // { + dependencies = [ + sources."minimatch-3.1.2" + ]; + }) (sources."globule-1.3.3" // { dependencies = [ sources."glob-7.1.7" @@ -116866,7 +116935,11 @@ in sources."function-bind-1.1.1" sources."gaze-1.1.3" sources."get-assigned-identifiers-1.2.0" - sources."glob-7.2.0" + (sources."glob-7.2.3" // { + dependencies = [ + sources."minimatch-3.1.2" + ]; + }) (sources."globule-1.3.3" // { dependencies = [ sources."glob-7.1.7" @@ -117204,10 +117277,10 @@ in pyright = nodeEnv.buildNodePackage { name = "pyright"; packageName = "pyright"; - version = "1.1.246"; + version = "1.1.247"; src = fetchurl { - url = "https://registry.npmjs.org/pyright/-/pyright-1.1.246.tgz"; - sha512 = "TEbHs4HD0J4/KGpXLqLBauOVT8G+yC7W8FKjyd00AzM9eyB+sx0EpujPnLKf6qI7x6LZJBgNoxpkPVq/6Wcq3A=="; + url = "https://registry.npmjs.org/pyright/-/pyright-1.1.247.tgz"; + sha512 = "G+TofKBoUsiaBQGYgg6VbQKANPxMaJ2i1H8oVNuXR9x7RGhNNNCuuIvga7StRy2dbsDdzIGaURsTzSf35ckYRw=="; }; buildInputs = globalBuildInputs; meta = { @@ -117468,19 +117541,19 @@ in sources."cycle-1.0.3" sources."deep-equal-2.0.5" sources."define-properties-1.1.4" - sources."es-abstract-1.20.0" + sources."es-abstract-1.20.1" sources."es-get-iterator-1.1.2" sources."es-to-primitive-1.2.1" sources."escape-string-regexp-1.0.5" sources."eyes-0.1.8" - sources."foreach-2.0.6" + sources."for-each-0.3.3" sources."fs.realpath-1.0.0" sources."function-bind-1.1.1" sources."function.prototype.name-1.1.5" sources."functions-have-names-1.2.3" sources."get-intrinsic-1.1.1" sources."get-symbol-description-1.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."has-1.0.3" sources."has-ansi-2.0.0" sources."has-bigints-1.0.2" @@ -117504,7 +117577,7 @@ in sources."is-shared-array-buffer-1.0.2" sources."is-string-1.0.7" sources."is-symbol-1.0.4" - sources."is-typed-array-1.1.8" + sources."is-typed-array-1.1.9" sources."is-weakmap-2.0.1" sources."is-weakref-1.0.2" sources."is-weakset-2.0.2" @@ -117538,7 +117611,7 @@ in sources."utile-0.2.1" sources."which-boxed-primitive-1.0.2" sources."which-collection-1.0.1" - sources."which-typed-array-1.1.7" + sources."which-typed-array-1.1.8" (sources."winston-0.8.3" // { dependencies = [ sources."pkginfo-0.3.1" @@ -117569,12 +117642,16 @@ in sources."@babel/cli-7.17.10" sources."@babel/code-frame-7.16.7" sources."@babel/compat-data-7.17.10" - (sources."@babel/core-7.17.10" // { + (sources."@babel/core-7.17.12" // { dependencies = [ sources."semver-6.3.0" ]; }) - sources."@babel/generator-7.17.10" + (sources."@babel/generator-7.17.12" // { + dependencies = [ + sources."@jridgewell/gen-mapping-0.3.1" + ]; + }) sources."@babel/helper-annotate-as-pure-7.16.7" sources."@babel/helper-builder-binary-assignment-operator-visitor-7.16.7" (sources."@babel/helper-compilation-targets-7.17.10" // { @@ -117582,8 +117659,8 @@ in sources."semver-6.3.0" ]; }) - sources."@babel/helper-create-class-features-plugin-7.17.9" - sources."@babel/helper-create-regexp-features-plugin-7.17.0" + sources."@babel/helper-create-class-features-plugin-7.17.12" + sources."@babel/helper-create-regexp-features-plugin-7.17.12" (sources."@babel/helper-define-polyfill-provider-0.3.1" // { dependencies = [ sources."semver-6.3.0" @@ -117595,9 +117672,9 @@ in sources."@babel/helper-hoist-variables-7.16.7" sources."@babel/helper-member-expression-to-functions-7.17.7" sources."@babel/helper-module-imports-7.16.7" - sources."@babel/helper-module-transforms-7.17.7" + sources."@babel/helper-module-transforms-7.17.12" sources."@babel/helper-optimise-call-expression-7.16.7" - sources."@babel/helper-plugin-utils-7.16.7" + sources."@babel/helper-plugin-utils-7.17.12" sources."@babel/helper-remap-async-to-generator-7.16.8" sources."@babel/helper-replace-supers-7.16.7" sources."@babel/helper-simple-access-7.17.7" @@ -117607,26 +117684,26 @@ in sources."@babel/helper-validator-option-7.16.7" sources."@babel/helper-wrap-function-7.16.8" sources."@babel/helpers-7.17.9" - sources."@babel/highlight-7.17.9" - sources."@babel/parser-7.17.10" - sources."@babel/plugin-bugfix-safari-id-destructuring-collision-in-function-expression-7.16.7" - sources."@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.16.7" - sources."@babel/plugin-proposal-async-generator-functions-7.16.8" - sources."@babel/plugin-proposal-class-properties-7.16.7" - sources."@babel/plugin-proposal-class-static-block-7.17.6" + sources."@babel/highlight-7.17.12" + sources."@babel/parser-7.17.12" + sources."@babel/plugin-bugfix-safari-id-destructuring-collision-in-function-expression-7.17.12" + sources."@babel/plugin-bugfix-v8-spread-parameters-in-optional-chaining-7.17.12" + sources."@babel/plugin-proposal-async-generator-functions-7.17.12" + sources."@babel/plugin-proposal-class-properties-7.17.12" + sources."@babel/plugin-proposal-class-static-block-7.17.12" sources."@babel/plugin-proposal-dynamic-import-7.16.7" - sources."@babel/plugin-proposal-export-default-from-7.16.7" - sources."@babel/plugin-proposal-export-namespace-from-7.16.7" - sources."@babel/plugin-proposal-json-strings-7.16.7" - sources."@babel/plugin-proposal-logical-assignment-operators-7.16.7" - sources."@babel/plugin-proposal-nullish-coalescing-operator-7.16.7" + sources."@babel/plugin-proposal-export-default-from-7.17.12" + sources."@babel/plugin-proposal-export-namespace-from-7.17.12" + sources."@babel/plugin-proposal-json-strings-7.17.12" + sources."@babel/plugin-proposal-logical-assignment-operators-7.17.12" + sources."@babel/plugin-proposal-nullish-coalescing-operator-7.17.12" sources."@babel/plugin-proposal-numeric-separator-7.16.7" - sources."@babel/plugin-proposal-object-rest-spread-7.17.3" + sources."@babel/plugin-proposal-object-rest-spread-7.17.12" sources."@babel/plugin-proposal-optional-catch-binding-7.16.7" - sources."@babel/plugin-proposal-optional-chaining-7.16.7" - sources."@babel/plugin-proposal-private-methods-7.16.11" - sources."@babel/plugin-proposal-private-property-in-object-7.16.7" - sources."@babel/plugin-proposal-unicode-property-regex-7.16.7" + sources."@babel/plugin-proposal-optional-chaining-7.17.12" + sources."@babel/plugin-proposal-private-methods-7.17.12" + sources."@babel/plugin-proposal-private-property-in-object-7.17.12" + sources."@babel/plugin-proposal-unicode-property-regex-7.17.12" sources."@babel/plugin-syntax-async-generators-7.8.4" sources."@babel/plugin-syntax-class-properties-7.12.13" sources."@babel/plugin-syntax-class-static-block-7.14.5" @@ -117634,7 +117711,7 @@ in sources."@babel/plugin-syntax-export-default-from-7.16.7" sources."@babel/plugin-syntax-export-namespace-from-7.8.3" sources."@babel/plugin-syntax-json-strings-7.8.3" - sources."@babel/plugin-syntax-jsx-7.16.7" + sources."@babel/plugin-syntax-jsx-7.17.12" sources."@babel/plugin-syntax-logical-assignment-operators-7.10.4" sources."@babel/plugin-syntax-nullish-coalescing-operator-7.8.3" sources."@babel/plugin-syntax-numeric-separator-7.10.4" @@ -117643,60 +117720,60 @@ in sources."@babel/plugin-syntax-optional-chaining-7.8.3" sources."@babel/plugin-syntax-private-property-in-object-7.14.5" sources."@babel/plugin-syntax-top-level-await-7.14.5" - sources."@babel/plugin-transform-arrow-functions-7.16.7" - sources."@babel/plugin-transform-async-to-generator-7.16.8" + sources."@babel/plugin-transform-arrow-functions-7.17.12" + sources."@babel/plugin-transform-async-to-generator-7.17.12" sources."@babel/plugin-transform-block-scoped-functions-7.16.7" - sources."@babel/plugin-transform-block-scoping-7.16.7" - sources."@babel/plugin-transform-classes-7.16.7" - sources."@babel/plugin-transform-computed-properties-7.16.7" - sources."@babel/plugin-transform-destructuring-7.17.7" + sources."@babel/plugin-transform-block-scoping-7.17.12" + sources."@babel/plugin-transform-classes-7.17.12" + sources."@babel/plugin-transform-computed-properties-7.17.12" + sources."@babel/plugin-transform-destructuring-7.17.12" sources."@babel/plugin-transform-dotall-regex-7.16.7" - sources."@babel/plugin-transform-duplicate-keys-7.16.7" + sources."@babel/plugin-transform-duplicate-keys-7.17.12" sources."@babel/plugin-transform-exponentiation-operator-7.16.7" - sources."@babel/plugin-transform-for-of-7.16.7" + sources."@babel/plugin-transform-for-of-7.17.12" sources."@babel/plugin-transform-function-name-7.16.7" - sources."@babel/plugin-transform-literals-7.16.7" + sources."@babel/plugin-transform-literals-7.17.12" sources."@babel/plugin-transform-member-expression-literals-7.16.7" - sources."@babel/plugin-transform-modules-amd-7.16.7" - sources."@babel/plugin-transform-modules-commonjs-7.17.9" - sources."@babel/plugin-transform-modules-systemjs-7.17.8" - sources."@babel/plugin-transform-modules-umd-7.16.7" - sources."@babel/plugin-transform-named-capturing-groups-regex-7.17.10" - sources."@babel/plugin-transform-new-target-7.16.7" + sources."@babel/plugin-transform-modules-amd-7.17.12" + sources."@babel/plugin-transform-modules-commonjs-7.17.12" + sources."@babel/plugin-transform-modules-systemjs-7.17.12" + sources."@babel/plugin-transform-modules-umd-7.17.12" + sources."@babel/plugin-transform-named-capturing-groups-regex-7.17.12" + sources."@babel/plugin-transform-new-target-7.17.12" sources."@babel/plugin-transform-object-super-7.16.7" - sources."@babel/plugin-transform-parameters-7.16.7" + sources."@babel/plugin-transform-parameters-7.17.12" sources."@babel/plugin-transform-property-literals-7.16.7" sources."@babel/plugin-transform-react-display-name-7.16.7" - sources."@babel/plugin-transform-react-jsx-7.17.3" + sources."@babel/plugin-transform-react-jsx-7.17.12" sources."@babel/plugin-transform-react-jsx-development-7.16.7" sources."@babel/plugin-transform-react-pure-annotations-7.16.7" sources."@babel/plugin-transform-regenerator-7.17.9" - sources."@babel/plugin-transform-reserved-words-7.16.7" - (sources."@babel/plugin-transform-runtime-7.17.10" // { + sources."@babel/plugin-transform-reserved-words-7.17.12" + (sources."@babel/plugin-transform-runtime-7.17.12" // { dependencies = [ sources."semver-6.3.0" ]; }) sources."@babel/plugin-transform-shorthand-properties-7.16.7" - sources."@babel/plugin-transform-spread-7.16.7" + sources."@babel/plugin-transform-spread-7.17.12" sources."@babel/plugin-transform-sticky-regex-7.16.7" - sources."@babel/plugin-transform-template-literals-7.16.7" - sources."@babel/plugin-transform-typeof-symbol-7.16.7" + sources."@babel/plugin-transform-template-literals-7.17.12" + sources."@babel/plugin-transform-typeof-symbol-7.17.12" sources."@babel/plugin-transform-unicode-escapes-7.16.7" sources."@babel/plugin-transform-unicode-regex-7.16.7" - (sources."@babel/preset-env-7.17.10" // { + (sources."@babel/preset-env-7.17.12" // { dependencies = [ sources."semver-6.3.0" ]; }) sources."@babel/preset-modules-0.1.5" - sources."@babel/preset-react-7.16.7" + sources."@babel/preset-react-7.17.12" sources."@babel/preset-stage-0-7.8.3" sources."@babel/register-7.17.7" sources."@babel/runtime-7.17.9" sources."@babel/template-7.16.7" - sources."@babel/traverse-7.17.10" - sources."@babel/types-7.17.10" + sources."@babel/traverse-7.17.12" + sources."@babel/types-7.17.12" sources."@jridgewell/gen-mapping-0.1.1" sources."@jridgewell/resolve-uri-3.0.7" sources."@jridgewell/set-array-1.1.1" @@ -117707,7 +117784,7 @@ in sources."@types/glob-7.2.0" sources."@types/json-schema-7.0.11" sources."@types/minimatch-3.0.5" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/parse-json-4.0.0" sources."@types/q-1.5.5" sources."@webassemblyjs/ast-1.9.0" @@ -117899,7 +117976,7 @@ in sources."camel-case-3.0.0" sources."camelcase-5.3.1" sources."caniuse-api-3.0.0" - sources."caniuse-lite-1.0.30001340" + sources."caniuse-lite-1.0.30001341" sources."case-sensitive-paths-webpack-plugin-2.4.0" sources."caw-2.0.1" sources."chalk-2.4.2" @@ -118151,7 +118228,7 @@ in sources."entities-2.2.0" sources."errno-0.1.8" sources."error-ex-1.3.2" - sources."es-abstract-1.20.0" + sources."es-abstract-1.20.1" sources."es-to-primitive-1.2.1" sources."escalade-3.1.1" sources."escape-html-1.0.3" @@ -118280,7 +118357,7 @@ in sources."get-value-2.0.6" sources."git-clone-0.1.0" sources."git-promise-1.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."globals-11.12.0" (sources."globby-6.1.0" // { @@ -119425,7 +119502,7 @@ in sources."deep-is-0.1.4" sources."delayed-stream-1.0.0" sources."domexception-4.0.0" - sources."dompurify-2.3.7" + sources."dompurify-2.3.8" sources."emoji-regex-8.0.0" sources."escalade-3.1.1" sources."escodegen-2.0.0" @@ -119475,7 +119552,7 @@ in sources."xml-name-validator-4.0.0" sources."xmlchars-2.2.0" sources."y18n-5.0.8" - sources."yargs-17.5.0" + sources."yargs-17.5.1" sources."yargs-parser-21.0.1" ]; buildInputs = globalBuildInputs; @@ -119491,14 +119568,14 @@ in redoc-cli = nodeEnv.buildNodePackage { name = "redoc-cli"; packageName = "redoc-cli"; - version = "0.13.13"; + version = "0.13.14"; src = fetchurl { - url = "https://registry.npmjs.org/redoc-cli/-/redoc-cli-0.13.13.tgz"; - sha512 = "v6Pj/KQNH3Rq/33Dvj9KJ7lZ42K5ugDIuTtbf4ZbzLF0LvuwoTO+Wq6JNxO5Ajcj/uVO9MaOeBwq0KH8FXIJoA=="; + url = "https://registry.npmjs.org/redoc-cli/-/redoc-cli-0.13.14.tgz"; + sha512 = "QPiVRdz0+CvLmjPzaIAz1RttpYUOSeUbep/WxLXaalu1Z9jeSjsI0yI2+HC3sh/tEuLzaHQ2bvE7mvGq0aTbWA=="; }; dependencies = [ sources."@babel/code-frame-7.16.7" - sources."@babel/generator-7.17.10" + sources."@babel/generator-7.17.12" sources."@babel/helper-annotate-as-pure-7.16.7" sources."@babel/helper-environment-visitor-7.16.7" sources."@babel/helper-function-name-7.17.9" @@ -119506,24 +119583,26 @@ in sources."@babel/helper-module-imports-7.16.7" sources."@babel/helper-split-export-declaration-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - sources."@babel/highlight-7.17.9" - sources."@babel/parser-7.17.10" + sources."@babel/highlight-7.17.12" + sources."@babel/parser-7.17.12" sources."@babel/runtime-7.17.9" sources."@babel/template-7.16.7" - sources."@babel/traverse-7.17.10" - sources."@babel/types-7.17.10" + sources."@babel/traverse-7.17.12" + sources."@babel/types-7.17.12" sources."@emotion/is-prop-valid-1.1.2" sources."@emotion/memoize-0.7.5" sources."@emotion/stylis-0.8.5" sources."@emotion/unitless-0.7.5" sources."@exodus/schemasafe-1.0.0-rc.6" - sources."@jridgewell/gen-mapping-0.1.1" + sources."@jridgewell/gen-mapping-0.3.1" + sources."@jridgewell/resolve-uri-3.0.7" sources."@jridgewell/set-array-1.1.1" sources."@jridgewell/sourcemap-codec-1.4.13" + sources."@jridgewell/trace-mapping-0.3.13" sources."@redocly/ajv-8.6.4" - sources."@redocly/openapi-core-1.0.0-beta.97" + sources."@redocly/openapi-core-1.0.0-beta.98" sources."@types/json-schema-7.0.11" - sources."@types/node-14.18.17" + sources."@types/node-14.18.18" sources."ansi-regex-5.0.1" sources."ansi-styles-3.2.1" sources."anymatch-3.1.2" @@ -119598,7 +119677,7 @@ in ]; }) sources."domain-browser-1.2.0" - sources."dompurify-2.3.7" + sources."dompurify-2.3.8" (sources."elliptic-6.5.4" // { dependencies = [ sources."bn.js-4.12.0" @@ -119656,7 +119735,7 @@ in sources."loose-envify-1.4.0" sources."lunr-2.3.9" sources."mark.js-8.11.1" - sources."marked-4.0.15" + sources."marked-4.0.16" sources."md5.js-1.3.5" (sources."miller-rabin-4.0.1" // { dependencies = [ @@ -119665,7 +119744,7 @@ in }) sources."minimalistic-assert-1.0.1" sources."minimalistic-crypto-utils-1.0.1" - sources."minimatch-5.0.1" + sources."minimatch-5.1.0" sources."minimist-1.2.6" sources."mkdirp-1.0.4" sources."mobx-6.5.0" @@ -119722,7 +119801,7 @@ in ]; }) sources."readdirp-3.6.0" - (sources."redoc-2.0.0-rc.69" // { + (sources."redoc-2.0.0-rc.70" // { dependencies = [ sources."path-browserify-1.0.1" ]; @@ -119795,7 +119874,7 @@ in sources."y18n-5.0.8" sources."yaml-1.10.2" sources."yaml-ast-parser-0.0.43" - sources."yargs-17.5.0" + sources."yargs-17.5.1" sources."yargs-parser-21.0.1" ]; buildInputs = globalBuildInputs; @@ -120272,7 +120351,7 @@ in sources."brace-expansion-1.1.11" sources."concat-map-0.0.1" sources."fs.realpath-1.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."inflight-1.0.6" sources."inherits-2.0.4" sources."minimatch-3.1.2" @@ -120293,10 +120372,10 @@ in rollup = nodeEnv.buildNodePackage { name = "rollup"; packageName = "rollup"; - version = "2.72.1"; + version = "2.73.0"; src = fetchurl { - url = "https://registry.npmjs.org/rollup/-/rollup-2.72.1.tgz"; - sha512 = "NTc5UGy/NWFGpSqF1lFY8z9Adri6uhyMLI6LvPAXdBKoPRFhIIiBUpt+Qg2awixqO3xvzSijjhnb4+QEZwJmxA=="; + url = "https://registry.npmjs.org/rollup/-/rollup-2.73.0.tgz"; + sha512 = "h/UngC3S4Zt28mB3g0+2YCMegT5yoftnQplwzPqGZcKvlld5e+kT/QRmJiL+qxGyZKOYpgirWGdLyEO1b0dpLQ=="; }; dependencies = [ sources."fsevents-2.3.2" @@ -120314,7 +120393,7 @@ in "rust-analyzer-build-deps-../../applications/editors/vscode/extensions/rust-analyzer/build-deps" = nodeEnv.buildNodePackage { name = "rust-analyzer"; packageName = "rust-analyzer"; - version = "0.2.1048"; + version = "0.3.1059"; src = ../../applications/editors/vscode/extensions/rust-analyzer/build-deps; dependencies = [ sources."@eslint/eslintrc-1.2.3" @@ -120327,15 +120406,15 @@ in sources."@tootallnate/once-1.1.2" sources."@types/json-schema-7.0.11" sources."@types/node-14.17.34" - sources."@types/vscode-1.63.2" - sources."@typescript-eslint/eslint-plugin-5.23.0" - sources."@typescript-eslint/parser-5.23.0" - sources."@typescript-eslint/scope-manager-5.23.0" - sources."@typescript-eslint/type-utils-5.23.0" - sources."@typescript-eslint/types-5.23.0" - sources."@typescript-eslint/typescript-estree-5.23.0" - sources."@typescript-eslint/utils-5.23.0" - sources."@typescript-eslint/visitor-keys-5.23.0" + sources."@types/vscode-1.66.0" + sources."@typescript-eslint/eslint-plugin-5.25.0" + sources."@typescript-eslint/parser-5.25.0" + sources."@typescript-eslint/scope-manager-5.25.0" + sources."@typescript-eslint/type-utils-5.25.0" + sources."@typescript-eslint/types-5.25.0" + sources."@typescript-eslint/typescript-estree-5.25.0" + sources."@typescript-eslint/utils-5.25.0" + sources."@typescript-eslint/visitor-keys-5.25.0" sources."@vscode/test-electron-2.1.3" sources."acorn-8.7.1" sources."acorn-jsx-5.3.2" @@ -120381,6 +120460,7 @@ in sources."concat-map-0.0.1" sources."console-control-strings-1.1.0" sources."core-util-is-1.0.3" + sources."cross-env-7.0.3" sources."cross-spawn-7.0.3" sources."css-select-4.3.0" sources."css-what-6.1.0" @@ -120515,7 +120595,7 @@ in sources."get-caller-file-2.0.5" sources."get-intrinsic-1.1.1" sources."github-from-package-0.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."globals-13.15.0" sources."globby-11.1.0" @@ -120665,7 +120745,7 @@ in sources."url-join-4.0.1" sources."util-deprecate-1.0.2" sources."v8-compile-cache-2.3.0" - (sources."vsce-2.7.0" // { + (sources."vsce-2.8.0" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -120678,10 +120758,10 @@ in sources."supports-color-5.5.0" ]; }) - sources."vscode-jsonrpc-8.0.0-next.5" - sources."vscode-languageclient-8.0.0-next.8" - sources."vscode-languageserver-protocol-3.17.0-next.12" - sources."vscode-languageserver-types-3.17.0-next.6" + sources."vscode-jsonrpc-8.0.0-next.7" + sources."vscode-languageclient-8.0.0-next.14" + sources."vscode-languageserver-protocol-3.17.0-next.16" + sources."vscode-languageserver-types-3.17.0-next.9" sources."which-2.0.2" sources."wide-align-1.1.5" sources."word-wrap-1.2.3" @@ -120691,7 +120771,7 @@ in sources."xmlbuilder-11.0.1" sources."y18n-5.0.8" sources."yallist-4.0.0" - sources."yargs-17.5.0" + sources."yargs-17.5.1" sources."yargs-parser-21.0.1" sources."yauzl-2.10.0" sources."yazl-2.5.1" @@ -120719,7 +120799,7 @@ in sources."p-locate-5.0.0" sources."path-exists-4.0.0" sources."picocolors-1.0.0" - sources."postcss-8.4.13" + sources."postcss-8.4.14" sources."source-map-js-1.0.2" sources."strip-json-comments-3.1.1" sources."yocto-queue-0.1.0" @@ -121032,7 +121112,7 @@ in sources."js-yaml-3.14.1" ]; }) - (sources."@serverless/utils-6.4.0" // { + (sources."@serverless/utils-6.5.0" // { dependencies = [ sources."jwt-decode-3.1.2" ]; @@ -121045,7 +121125,7 @@ in sources."@types/json-buffer-3.0.0" sources."@types/keyv-3.1.4" sources."@types/lodash-4.14.182" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/responselike-1.0.0" sources."adm-zip-0.5.9" sources."agent-base-6.0.2" @@ -121071,7 +121151,7 @@ in sources."async-3.2.3" sources."asynckit-0.4.0" sources."at-least-node-1.0.0" - (sources."aws-sdk-2.1134.0" // { + (sources."aws-sdk-2.1138.0" // { dependencies = [ sources."buffer-4.9.2" sources."ieee754-1.1.13" @@ -121259,7 +121339,7 @@ in sources."get-intrinsic-1.1.1" sources."get-stdin-8.0.0" sources."get-stream-6.0.1" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."globby-11.1.0" sources."got-11.8.3" @@ -121313,7 +121393,7 @@ in sources."jsonfile-6.1.0" sources."jszip-3.9.1" sources."jwt-decode-2.2.0" - sources."keyv-4.2.8" + sources."keyv-4.2.9" sources."lazystream-1.0.1" sources."lie-3.3.0" sources."lodash-4.17.21" @@ -122144,10 +122224,10 @@ in snyk = nodeEnv.buildNodePackage { name = "snyk"; packageName = "snyk"; - version = "1.928.0"; + version = "1.931.0"; src = fetchurl { - url = "https://registry.npmjs.org/snyk/-/snyk-1.928.0.tgz"; - sha512 = "5Surqm2iWk6sAC0i0JrBw4qPKBTW2YQ8f3s4YDuuLFUinEaDbit2DNqPgFESIRWUVWp7j+g1OT+K2KA7K3RM7Q=="; + url = "https://registry.npmjs.org/snyk/-/snyk-1.931.0.tgz"; + sha512 = "anaEdv5e7BugJeRWuT5tviW46ABmOoPb8+4Ijv+kjZvKa6zCIKL0i8kODKmOpOENGAs+2qrAJPI3dAEUPQiAdg=="; }; buildInputs = globalBuildInputs; meta = { @@ -122161,16 +122241,16 @@ in "socket.io" = nodeEnv.buildNodePackage { name = "socket.io"; packageName = "socket.io"; - version = "4.5.0"; + version = "4.5.1"; src = fetchurl { - url = "https://registry.npmjs.org/socket.io/-/socket.io-4.5.0.tgz"; - sha512 = "slTYqU2jCgMjXwresG8grhUi/cC6GjzmcfqArzaH3BN/9I/42eZk9yamNvZJdBfTubkjEdKAKs12NEztId+bUA=="; + url = "https://registry.npmjs.org/socket.io/-/socket.io-4.5.1.tgz"; + sha512 = "0y9pnIso5a9i+lJmsCdtmTTgJFFSvNQKDnPQRz28mGNnxbmqYg2QPtJTLFxhymFZhAIn50eHAKzJeiNaKr+yUQ=="; }; dependencies = [ sources."@types/component-emitter-1.2.11" sources."@types/cookie-0.4.1" sources."@types/cors-2.8.12" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."accepts-1.3.8" sources."base64id-2.0.0" sources."component-emitter-1.3.0" @@ -122210,7 +122290,7 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -122364,10 +122444,10 @@ in sql-formatter = nodeEnv.buildNodePackage { name = "sql-formatter"; packageName = "sql-formatter"; - version = "6.1.0"; + version = "6.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/sql-formatter/-/sql-formatter-6.1.0.tgz"; - sha512 = "orheHQZIHz/v51eCIJzTUcmTrF+hZGPcparpM3+A0rdBFj0ppGf+Z7LbcdmytyzLXQqgEQGaERdOThe/NAOD3w=="; + url = "https://registry.npmjs.org/sql-formatter/-/sql-formatter-6.1.1.tgz"; + sha512 = "NiUP90vNb6NjQryWz0bPsvv4BTqe/wY75mRbh2E6M1kKZIoCKtueeKIDMQBB+RI8pjxVUQy7e35JUXQj6YYonQ=="; }; dependencies = [ sources."argparse-2.0.1" @@ -122437,7 +122517,7 @@ in sources."base64-js-1.5.1" sources."base64-url-2.3.3" sources."bash-color-0.0.4" - sources."bencode-2.0.2" + sources."bencode-2.0.3" sources."binary-extensions-1.13.1" sources."binary-search-1.3.6" sources."binary-search-bounds-2.0.5" @@ -122548,7 +122628,7 @@ in }) sources."epidemic-broadcast-trees-7.0.0" sources."errno-0.1.8" - sources."es-abstract-1.20.0" + sources."es-abstract-1.20.1" (sources."es-get-iterator-1.1.2" // { dependencies = [ sources."isarray-2.0.5" @@ -122613,7 +122693,6 @@ in sources."for-each-0.3.3" sources."for-in-1.0.2" sources."for-own-0.1.5" - sources."foreach-2.0.6" sources."fragment-cache-0.2.1" sources."fs.realpath-1.0.0" sources."fsevents-1.2.13" @@ -122717,7 +122796,7 @@ in sources."is-shared-array-buffer-1.0.2" sources."is-string-1.0.7" sources."is-symbol-1.0.4" - sources."is-typed-array-1.1.8" + sources."is-typed-array-1.1.9" sources."is-typedarray-1.0.0" sources."is-valid-domain-0.0.20" sources."is-weakmap-2.0.1" @@ -122795,7 +122874,7 @@ in sources."ms-2.1.2" (sources."multiblob-1.13.8" // { dependencies = [ - sources."glob-7.2.0" + sources."glob-7.2.3" sources."mkdirp-1.0.4" sources."rimraf-3.0.2" ]; @@ -123061,7 +123140,7 @@ in sources."right-pad-1.0.1" (sources."rimraf-2.7.1" // { dependencies = [ - sources."glob-7.2.0" + sources."glob-7.2.3" ]; }) sources."rng-0.2.2" @@ -123150,7 +123229,7 @@ in sources."level-codec-6.2.0" ]; }) - sources."glob-7.2.0" + sources."glob-7.2.3" sources."level-6.0.1" sources."level-js-5.0.2" sources."mkdirp-1.0.4" @@ -123243,7 +123322,7 @@ in sources."supports-preserve-symlinks-flag-1.0.0" (sources."tape-4.15.1" // { dependencies = [ - sources."glob-7.2.0" + sources."glob-7.2.3" ]; }) sources."text-table-0.2.0" @@ -123306,7 +123385,7 @@ in sources."which-1.3.1" sources."which-boxed-primitive-1.0.2" sources."which-collection-1.0.1" - sources."which-typed-array-1.1.7" + sources."which-typed-array-1.1.8" sources."word-wrap-1.2.3" sources."wrap-fn-0.1.5" sources."wrappy-1.0.2" @@ -123410,7 +123489,7 @@ in sources."async-1.5.2" sources."async-limiter-1.0.1" sources."asynckit-0.4.0" - (sources."aws-sdk-2.1134.0" // { + (sources."aws-sdk-2.1138.0" // { dependencies = [ sources."uuid-3.3.2" ]; @@ -124036,7 +124115,7 @@ in sources."switchback-2.0.5" (sources."temp-0.8.4" // { dependencies = [ - sources."glob-7.2.0" + sources."glob-7.2.3" sources."rimraf-2.6.3" ]; }) @@ -124194,7 +124273,7 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - sources."@babel/highlight-7.17.9" + sources."@babel/highlight-7.17.12" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" @@ -124250,7 +124329,7 @@ in sources."fs.realpath-1.0.0" sources."function-bind-1.1.1" sources."get-stdin-8.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."global-modules-2.0.0" sources."global-prefix-3.0.0" @@ -124317,7 +124396,7 @@ in sources."path-type-4.0.0" sources."picocolors-1.0.0" sources."picomatch-2.3.1" - sources."postcss-8.4.13" + sources."postcss-8.4.14" sources."postcss-media-query-parser-0.2.3" sources."postcss-resolve-nested-selector-0.1.1" sources."postcss-safe-parser-6.0.0" @@ -124449,7 +124528,7 @@ in sources."fs.realpath-1.0.0" sources."fstream-1.0.12" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."graceful-fs-4.2.10" sources."har-schema-2.0.0" sources."har-validator-5.1.5" @@ -124540,16 +124619,19 @@ in svelte-check = nodeEnv.buildNodePackage { name = "svelte-check"; packageName = "svelte-check"; - version = "2.7.0"; + version = "2.7.1"; src = fetchurl { - url = "https://registry.npmjs.org/svelte-check/-/svelte-check-2.7.0.tgz"; - sha512 = "GrvG24j0+i8AOm0k0KyJ6Dqc+TAR2yzB7rtS4nljHStunVxCTr/1KYlv4EsOeoqtHLzeWMOd5D2O6nDdP/yw4A=="; + url = "https://registry.npmjs.org/svelte-check/-/svelte-check-2.7.1.tgz"; + sha512 = "vHVu2+SQ6ibt77iTQaq2oiOjBgGL48qqcg0ZdEOsP5pPOjgeyR9QbnaEdzdBs9nsVYBc/42haKtzb2uFqS8GVw=="; }; dependencies = [ + sources."@jridgewell/resolve-uri-3.0.7" + sources."@jridgewell/sourcemap-codec-1.4.13" + sources."@jridgewell/trace-mapping-0.3.13" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/pug-2.0.6" sources."@types/sass-1.43.1" sources."anymatch-3.1.2" @@ -124568,7 +124650,7 @@ in sources."fill-range-7.0.1" sources."fs.realpath-1.0.0" sources."fsevents-2.3.2" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."graceful-fs-4.2.10" sources."import-fresh-3.3.0" @@ -124601,7 +124683,6 @@ in sources."sade-1.8.1" sources."sander-0.5.1" sources."sorcery-0.10.0" - sources."source-map-0.7.3" sources."sourcemap-codec-1.4.8" sources."strip-indent-3.0.0" sources."svelte-preprocess-4.10.6" @@ -124622,19 +124703,22 @@ in svelte-language-server = nodeEnv.buildNodePackage { name = "svelte-language-server"; packageName = "svelte-language-server"; - version = "0.14.26"; + version = "0.14.27"; src = fetchurl { - url = "https://registry.npmjs.org/svelte-language-server/-/svelte-language-server-0.14.26.tgz"; - sha512 = "U4pJ0ISruXQ6z+4++szyN2fsapa9/usVb1UlPC0p6sPfWfmQgFlR4125zWsMr0nl1ScsYa8VdEweQlk7mrq6zw=="; + url = "https://registry.npmjs.org/svelte-language-server/-/svelte-language-server-0.14.27.tgz"; + sha512 = "tlMzJpTdhCWLNOAeTB1iVevHw8SmXODTfdjAep9hnaTjIxznPLNUkQQss6so2HfNFVnv/VXXEZS+OeNYkK4nJQ=="; }; dependencies = [ sources."@emmetio/abbreviation-2.2.3" sources."@emmetio/css-abbreviation-2.1.4" sources."@emmetio/scanner-1.0.0" + sources."@jridgewell/resolve-uri-3.0.7" + sources."@jridgewell/sourcemap-codec-1.4.13" + sources."@jridgewell/trace-mapping-0.3.13" sources."@nodelib/fs.scandir-2.1.5" sources."@nodelib/fs.stat-2.0.5" sources."@nodelib/fs.walk-1.2.8" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/pug-2.0.6" sources."@types/sass-1.43.1" sources."anymatch-3.1.2" @@ -124655,7 +124739,7 @@ in sources."fill-range-7.0.1" sources."fs.realpath-1.0.0" sources."fsevents-2.3.2" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."graceful-fs-4.2.10" sources."inflight-1.0.6" @@ -124689,12 +124773,11 @@ in sources."run-parallel-1.2.0" sources."sander-0.5.1" sources."sorcery-0.10.0" - sources."source-map-0.7.3" sources."sourcemap-codec-1.4.8" sources."strip-indent-3.0.0" sources."svelte-3.48.0" sources."svelte-preprocess-4.10.6" - sources."svelte2tsx-0.5.9" + sources."svelte2tsx-0.5.10" sources."to-regex-range-5.0.1" sources."tslib-2.4.0" sources."typescript-4.6.4" @@ -124970,7 +125053,7 @@ in sources."get-intrinsic-1.1.1" sources."get-stream-3.0.0" sources."get-value-2.0.6" - sources."glob-7.2.0" + sources."glob-7.2.3" (sources."glob-parent-3.1.0" // { dependencies = [ sources."is-glob-3.1.0" @@ -125474,7 +125557,7 @@ in sources."path-parse-1.0.7" sources."picocolors-1.0.0" sources."picomatch-2.3.1" - sources."postcss-8.4.13" + sources."postcss-8.4.14" sources."postcss-js-4.0.0" sources."postcss-load-config-3.1.4" sources."postcss-nested-5.0.6" @@ -125672,7 +125755,7 @@ in sources."enhanced-resolve-2.3.0" sources."errno-0.1.8" sources."fs.realpath-1.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."graceful-fs-4.2.10" sources."inflight-1.0.6" sources."inherits-2.0.4" @@ -125807,7 +125890,7 @@ in sources."functions-have-names-1.2.3" sources."get-intrinsic-1.1.1" sources."get-stdin-5.0.1" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."graceful-fs-4.2.10" sources."has-1.0.3" sources."has-flag-4.0.0" @@ -126020,7 +126103,7 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - sources."@babel/highlight-7.17.9" + sources."@babel/highlight-7.17.12" sources."@sindresorhus/is-0.14.0" sources."@szmarczak/http-timer-1.1.2" sources."@types/hast-2.3.4" @@ -126121,7 +126204,7 @@ in }) sources."git-diff-tree-1.1.0" sources."git-spawned-stream-1.0.1" - sources."glob-7.2.0" + sources."glob-7.2.3" (sources."global-dirs-2.1.0" // { dependencies = [ sources."ini-1.3.7" @@ -126602,7 +126685,7 @@ in sources."define-properties-1.1.4" sources."emoji-regex-6.5.1" sources."end-with-1.0.2" - sources."es-abstract-1.20.0" + sources."es-abstract-1.20.1" sources."es-shim-unscopables-1.0.0" sources."es-to-primitive-1.2.1" sources."function-bind-1.1.1" @@ -126717,7 +126800,7 @@ in sources."array-includes-3.1.5" sources."call-bind-1.0.2" sources."define-properties-1.1.4" - sources."es-abstract-1.20.0" + sources."es-abstract-1.20.1" sources."es-to-primitive-1.2.1" sources."function-bind-1.1.1" sources."function.prototype.name-1.1.5" @@ -126818,7 +126901,7 @@ in sources."@types/http-cache-semantics-4.0.1" sources."@types/json-buffer-3.0.0" sources."@types/keyv-3.1.4" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/responselike-1.0.0" sources."abbrev-1.1.1" sources."abstract-logging-2.0.1" @@ -126905,7 +126988,7 @@ in }) sources."engine.io-parser-5.0.4" sources."entities-2.2.0" - sources."es-abstract-1.20.0" + sources."es-abstract-1.20.1" sources."es-to-primitive-1.2.1" sources."escape-html-1.0.3" sources."escape-string-regexp-1.0.5" @@ -126918,7 +127001,7 @@ in sources."filename-reserved-regex-2.0.0" sources."filenamify-4.3.0" sources."finalhandler-1.1.2" - sources."foreach-2.0.6" + sources."for-each-0.3.3" sources."forwarded-0.2.0" sources."fresh-0.5.2" sources."fs-minipass-2.1.0" @@ -126930,7 +127013,7 @@ in sources."get-intrinsic-1.1.1" sources."get-stream-5.2.0" sources."get-symbol-description-1.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."got-11.8.3" sources."grapheme-splitter-1.0.4" sources."has-1.0.3" @@ -126977,14 +127060,14 @@ in sources."is-shared-array-buffer-1.0.2" sources."is-string-1.0.7" sources."is-symbol-1.0.4" - sources."is-typed-array-1.1.8" + sources."is-typed-array-1.1.9" sources."is-utf8-0.2.1" sources."is-weakref-1.0.2" sources."isomorphic-textencoder-1.0.1" sources."json-buffer-3.0.1" sources."jwa-2.0.0" sources."jws-4.0.0" - sources."keyv-4.2.8" + sources."keyv-4.2.9" sources."ldap-filter-0.3.3" sources."ldapjs-2.3.1" sources."linkify-it-3.0.3" @@ -127125,7 +127208,7 @@ in sources."webidl-conversions-3.0.1" sources."whatwg-url-5.0.0" sources."which-boxed-primitive-1.0.2" - sources."which-typed-array-1.1.7" + sources."which-typed-array-1.1.8" sources."wide-align-1.1.5" sources."with-open-file-0.1.7" sources."wrappy-1.0.2" @@ -127164,7 +127247,7 @@ in sources."@types/http-cache-semantics-4.0.1" sources."@types/json-buffer-3.0.0" sources."@types/keyv-3.1.4" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/responselike-1.0.0" sources."abbrev-1.1.1" sources."abstract-logging-2.0.1" @@ -127251,7 +127334,7 @@ in }) sources."engine.io-parser-5.0.4" sources."entities-2.2.0" - sources."es-abstract-1.20.0" + sources."es-abstract-1.20.1" sources."es-to-primitive-1.2.1" sources."escape-html-1.0.3" sources."escape-string-regexp-1.0.5" @@ -127264,7 +127347,7 @@ in sources."filename-reserved-regex-2.0.0" sources."filenamify-4.3.0" sources."finalhandler-1.1.2" - sources."foreach-2.0.6" + sources."for-each-0.3.3" sources."forwarded-0.2.0" sources."fresh-0.5.2" sources."fs-minipass-2.1.0" @@ -127276,7 +127359,7 @@ in sources."get-intrinsic-1.1.1" sources."get-stream-5.2.0" sources."get-symbol-description-1.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."got-11.8.3" sources."grapheme-splitter-1.0.4" sources."has-1.0.3" @@ -127323,14 +127406,14 @@ in sources."is-shared-array-buffer-1.0.2" sources."is-string-1.0.7" sources."is-symbol-1.0.4" - sources."is-typed-array-1.1.8" + sources."is-typed-array-1.1.9" sources."is-utf8-0.2.1" sources."is-weakref-1.0.2" sources."isomorphic-textencoder-1.0.1" sources."json-buffer-3.0.1" sources."jwa-2.0.0" sources."jws-4.0.0" - sources."keyv-4.2.8" + sources."keyv-4.2.9" sources."ldap-filter-0.3.3" sources."ldapjs-2.3.1" sources."linkify-it-3.0.3" @@ -127472,7 +127555,7 @@ in sources."webidl-conversions-3.0.1" sources."whatwg-url-5.0.0" sources."which-boxed-primitive-1.0.2" - sources."which-typed-array-1.1.7" + sources."which-typed-array-1.1.8" sources."wide-align-1.1.5" sources."with-open-file-0.1.7" sources."wrappy-1.0.2" @@ -127665,7 +127748,7 @@ in sources."get-intrinsic-1.1.1" sources."get-stream-4.1.0" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."got-9.6.0" sources."graceful-fs-4.2.10" sources."grapheme-splitter-1.0.4" @@ -128177,7 +128260,7 @@ in sources."@types/http-cache-semantics-4.0.1" sources."@types/json-buffer-3.0.0" sources."@types/keyv-3.1.4" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/responselike-1.0.0" sources."abbrev-1.1.1" sources."abstract-logging-2.0.1" @@ -128333,7 +128416,7 @@ in sources."gauge-2.7.4" sources."get-stream-5.2.0" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."got-11.5.2" sources."graceful-fs-4.2.10" sources."grapheme-splitter-1.0.4" @@ -128392,7 +128475,7 @@ in }) sources."jwa-2.0.0" sources."jws-4.0.0" - sources."keyv-4.2.8" + sources."keyv-4.2.9" sources."ldap-filter-0.3.3" sources."ldapjs-2.1.1" sources."linkify-it-3.0.2" @@ -128644,7 +128727,7 @@ in sources."@types/http-cache-semantics-4.0.1" sources."@types/json-buffer-3.0.0" sources."@types/keyv-3.1.4" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/responselike-1.0.0" sources."abbrev-1.1.1" sources."abstract-logging-2.0.1" @@ -128800,7 +128883,7 @@ in sources."gauge-2.7.4" sources."get-stream-5.2.0" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."got-11.5.2" sources."graceful-fs-4.2.10" sources."grapheme-splitter-1.0.4" @@ -128859,7 +128942,7 @@ in }) sources."jwa-2.0.0" sources."jws-4.0.0" - sources."keyv-4.2.8" + sources."keyv-4.2.9" sources."ldap-filter-0.3.3" sources."ldapjs-2.1.1" sources."linkify-it-3.0.2" @@ -129588,7 +129671,7 @@ in sources."fs-extra-9.1.0" sources."fs.realpath-1.0.0" sources."getpass-0.1.7" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."graceful-fs-4.2.10" sources."har-schema-2.0.0" sources."har-validator-5.1.5" @@ -129889,7 +129972,7 @@ in sources."diff-3.5.0" sources."escape-string-regexp-1.0.5" sources."fs.realpath-1.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."has-ansi-2.0.0" sources."inflight-1.0.6" sources."inherits-2.0.4" @@ -130011,7 +130094,7 @@ in sources."commander-9.2.0" sources."concat-map-0.0.1" sources."crypto-random-string-2.0.0" - sources."del-6.0.0" + sources."del-6.1.0" sources."dir-glob-3.0.1" sources."fast-glob-3.2.11" sources."fastq-1.13.0" @@ -130019,7 +130102,7 @@ in sources."find-up-3.0.0" sources."fs-extra-10.1.0" sources."fs.realpath-1.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."globby-11.1.0" sources."graceful-fs-4.2.10" @@ -130148,7 +130231,7 @@ in sources."@types/http-cache-semantics-4.0.1" sources."@types/json-buffer-3.0.0" sources."@types/keyv-3.1.4" - sources."@types/node-16.11.34" + sources."@types/node-16.11.36" sources."@types/responselike-1.0.0" sources."abbrev-1.1.1" sources."accepts-1.3.8" @@ -130246,7 +130329,7 @@ in sources."get-caller-file-2.0.5" sources."get-stream-5.2.0" sources."getmac-5.20.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."got-11.8.3" sources."hasher-1.2.0" (sources."hogan.js-3.0.2" // { @@ -130274,7 +130357,7 @@ in sources."jquery-ui-1.13.1" sources."json-buffer-3.0.1" sources."just-detect-adblock-1.1.0" - sources."keyv-4.2.8" + sources."keyv-4.2.9" sources."knockout-3.5.1" sources."kuler-2.0.0" sources."latest-version-6.0.0" @@ -130321,7 +130404,7 @@ in sources."package-json-7.0.0" sources."parse-json-2.2.0" sources."parseurl-1.3.3" - sources."passport-0.5.2" + sources."passport-0.5.3" sources."passport-local-1.0.0" sources."passport-strategy-1.0.0" sources."path-is-absolute-1.0.1" @@ -130460,13 +130543,13 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - sources."@babel/highlight-7.17.9" + sources."@babel/highlight-7.17.12" sources."@types/concat-stream-2.0.0" sources."@types/debug-4.1.7" sources."@types/is-empty-1.2.1" sources."@types/js-yaml-4.0.5" sources."@types/ms-0.7.31" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/supports-color-8.1.1" sources."@types/unist-2.0.6" sources."ansi-regex-6.0.1" @@ -130491,7 +130574,7 @@ in sources."find-up-3.0.0" sources."format-0.2.2" sources."fs.realpath-1.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."has-flag-3.0.0" sources."ignore-5.2.0" sources."import-meta-resolve-1.1.1" @@ -130617,7 +130700,7 @@ in sources."fs.realpath-1.0.0" sources."gauge-3.0.2" sources."get-caller-file-2.0.5" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."has-unicode-2.0.1" sources."https-proxy-agent-5.0.1" sources."iconv-lite-0.6.3" @@ -130708,7 +130791,7 @@ in sources."wrappy-1.0.2" sources."y18n-5.0.8" sources."yallist-4.0.0" - sources."yargs-17.5.0" + sources."yargs-17.5.1" sources."yargs-parser-21.0.1" ]; buildInputs = globalBuildInputs; @@ -130771,21 +130854,21 @@ in vercel = nodeEnv.buildNodePackage { name = "vercel"; packageName = "vercel"; - version = "24.2.1"; + version = "24.2.3"; src = fetchurl { - url = "https://registry.npmjs.org/vercel/-/vercel-24.2.1.tgz"; - sha512 = "sKVn/Q3WGF6a6bXjBLgfR3oyi9Pb7KQrltHOam6aM5vAWWMyC5uJi4e5mVVZ2KULlO6I6e5GKNxzNFxw1FWYiA=="; + url = "https://registry.npmjs.org/vercel/-/vercel-24.2.3.tgz"; + sha512 = "ezriIQotWuSxZ7aqcEuB1+lKi0MHp8/BEvvaOmzf27fP7+mLVBVEdPc8bzlpw548wk/l8wBRhvRDzc1kpuDnRQ=="; }; dependencies = [ sources."@sindresorhus/is-0.14.0" sources."@szmarczak/http-timer-1.1.2" - sources."@types/node-17.0.32" - sources."@vercel/build-utils-2.17.0" - sources."@vercel/go-1.4.1" - sources."@vercel/node-1.15.1" + sources."@types/node-17.0.34" + sources."@vercel/build-utils-3.0.1" + sources."@vercel/go-1.4.2" + sources."@vercel/node-1.15.2" sources."@vercel/node-bridge-2.2.1" - sources."@vercel/python-2.3.1" - sources."@vercel/ruby-1.3.4" + sources."@vercel/python-2.3.2" + sources."@vercel/ruby-1.3.5" sources."ansi-align-3.0.1" sources."ansi-regex-5.0.1" sources."ansi-styles-4.3.0" @@ -130916,7 +130999,7 @@ in dependencies = [ sources."@babel/code-frame-7.12.11" sources."@babel/helper-validator-identifier-7.16.7" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."chalk-2.4.2" sources."escape-string-regexp-1.0.5" @@ -130928,7 +131011,7 @@ in sources."acorn-7.4.1" sources."acorn-jsx-5.3.2" sources."ajv-6.12.6" - sources."ansi-colors-4.1.1" + sources."ansi-colors-4.1.3" sources."ansi-regex-5.0.1" sources."ansi-styles-3.2.1" sources."argparse-1.0.10" @@ -131001,7 +131084,7 @@ in sources."function-bind-1.1.1" sources."functional-red-black-tree-1.0.1" sources."get-intrinsic-1.1.1" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."globals-13.15.0" sources."has-1.0.3" @@ -131365,7 +131448,7 @@ in sources."buffer-from-1.1.2" sources."call-bind-1.0.2" sources."camelcase-6.3.0" - sources."caniuse-lite-1.0.30001340" + sources."caniuse-lite-1.0.30001341" (sources."chalk-4.1.2" // { dependencies = [ sources."supports-color-7.2.0" @@ -131769,7 +131852,7 @@ in sources."get-stream-3.0.0" sources."getpass-0.1.7" sources."git-clone-0.1.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."got-6.7.1" sources."graceful-fs-4.2.10" sources."gray-matter-4.0.3" @@ -131817,7 +131900,7 @@ in sources."pify-3.0.0" ]; }) - (sources."metalsmith-2.4.2" // { + (sources."metalsmith-2.4.3" // { dependencies = [ sources."ansi-styles-4.3.0" sources."chalk-4.1.2" @@ -131968,7 +132051,7 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - sources."@babel/highlight-7.17.9" + sources."@babel/highlight-7.17.12" sources."@emmetio/extract-abbreviation-0.1.6" sources."@mrmlnc/readdir-enhanced-2.2.1" sources."@nodelib/fs.stat-1.1.3" @@ -131984,7 +132067,7 @@ in sources."@starptech/rehype-webparser-0.10.0" sources."@starptech/webparser-0.10.0" sources."@szmarczak/http-timer-1.1.2" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/unist-2.0.6" sources."@types/vfile-3.0.2" sources."@types/vfile-message-2.0.0" @@ -132271,7 +132354,7 @@ in sources."get-caller-file-1.0.3" sources."get-stream-3.0.0" sources."get-value-2.0.6" - sources."glob-7.2.0" + sources."glob-7.2.3" (sources."glob-parent-3.1.0" // { dependencies = [ sources."is-glob-3.1.0" @@ -132984,7 +133067,7 @@ in sources."fs.realpath-1.0.0" sources."gauge-3.0.2" sources."get-caller-file-2.0.5" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."graceful-fs-4.2.10" sources."has-unicode-2.0.1" sources."html-encoding-sniffer-2.0.1" @@ -133086,7 +133169,7 @@ in sources."xmlchars-2.2.0" sources."y18n-5.0.8" sources."yallist-4.0.0" - sources."yargs-17.5.0" + sources."yargs-17.5.1" sources."yargs-parser-21.0.1" ]; buildInputs = globalBuildInputs; @@ -133110,7 +133193,7 @@ in dependencies = [ sources."@babel/code-frame-7.16.7" sources."@babel/helper-validator-identifier-7.16.7" - (sources."@babel/highlight-7.17.9" // { + (sources."@babel/highlight-7.17.12" // { dependencies = [ sources."ansi-styles-3.2.1" sources."chalk-2.4.2" @@ -133143,7 +133226,7 @@ in sources."@sindresorhus/is-0.14.0" sources."@szmarczak/http-timer-1.1.2" sources."@types/minimatch-3.0.5" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/yauzl-2.9.2" sources."acorn-8.7.1" sources."acorn-jsx-5.3.2" @@ -133671,7 +133754,7 @@ in sources."@types/eslint-scope-3.7.3" sources."@types/estree-0.0.51" sources."@types/json-schema-7.0.11" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@webassemblyjs/ast-1.11.1" sources."@webassemblyjs/floating-point-hex-parser-1.11.1" sources."@webassemblyjs/helper-api-error-1.11.1" @@ -133695,7 +133778,7 @@ in sources."ajv-keywords-3.5.2" sources."browserslist-4.20.3" sources."buffer-from-1.1.2" - sources."caniuse-lite-1.0.30001340" + sources."caniuse-lite-1.0.30001341" sources."chrome-trace-event-1.0.3" sources."commander-2.20.3" sources."electron-to-chromium-1.4.137" @@ -133846,7 +133929,7 @@ in sources."@types/http-proxy-1.17.9" sources."@types/json-schema-7.0.11" sources."@types/mime-1.3.2" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/qs-6.9.7" sources."@types/range-parser-1.2.4" sources."@types/retry-0.12.0" @@ -133923,7 +134006,7 @@ in sources."function-bind-1.1.1" sources."get-intrinsic-1.1.1" sources."get-stream-6.0.1" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."glob-parent-5.1.2" sources."graceful-fs-4.2.10" sources."handle-thing-2.0.1" @@ -133957,7 +134040,7 @@ in sources."isexe-2.0.0" sources."json-schema-traverse-1.0.0" sources."media-typer-0.3.0" - sources."memfs-3.4.1" + sources."memfs-3.4.3" sources."merge-descriptors-1.0.1" sources."merge-stream-2.0.0" sources."methods-1.1.2" @@ -133969,7 +134052,7 @@ in sources."minimalistic-assert-1.0.1" sources."minimatch-3.1.2" sources."ms-2.0.0" - sources."multicast-dns-7.2.4" + sources."multicast-dns-7.2.5" sources."negotiator-0.6.3" sources."node-forge-1.3.1" sources."normalize-path-3.0.0" @@ -134059,7 +134142,7 @@ in sources."uuid-8.3.2" sources."vary-1.1.2" sources."wbuf-1.7.3" - sources."webpack-dev-middleware-5.3.1" + sources."webpack-dev-middleware-5.3.3" sources."websocket-driver-0.7.4" sources."websocket-extensions-0.1.4" sources."which-2.0.2" @@ -134079,10 +134162,10 @@ in copy-webpack-plugin = nodeEnv.buildNodePackage { name = "copy-webpack-plugin"; packageName = "copy-webpack-plugin"; - version = "10.2.4"; + version = "11.0.0"; src = fetchurl { - url = "https://registry.npmjs.org/copy-webpack-plugin/-/copy-webpack-plugin-10.2.4.tgz"; - sha512 = "xFVltahqlsRcyyJqQbDY6EYTtyQZF9rf+JPjwHObLdPFMEISqkFkr7mFoVOC6BfYS/dNThyoQKvziugm+OnwBg=="; + url = "https://registry.npmjs.org/copy-webpack-plugin/-/copy-webpack-plugin-11.0.0.tgz"; + sha512 = "fX2MWpamkW0hZxMEg0+mYnA40LTosOSa5TqZ9GYIBzyJa9C3QUaMPSE2xAi/buNr8u89SfD9wHSQVBzrRa/SOQ=="; }; dependencies = [ sources."@nodelib/fs.scandir-2.1.5" @@ -134092,7 +134175,6 @@ in sources."ajv-8.11.0" sources."ajv-formats-2.1.1" sources."ajv-keywords-5.1.0" - sources."array-union-3.0.1" sources."braces-3.0.2" sources."dir-glob-3.0.1" sources."fast-deep-equal-3.1.3" @@ -134104,7 +134186,7 @@ in sources."fastq-1.13.0" sources."fill-range-7.0.1" sources."glob-parent-6.0.2" - sources."globby-12.2.0" + sources."globby-13.1.1" sources."ignore-5.2.0" sources."is-extglob-2.1.1" sources."is-glob-4.0.3" @@ -134159,7 +134241,7 @@ in sources."@protobufjs/pool-1.1.0" sources."@protobufjs/utf8-1.1.0" sources."@types/long-4.0.2" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@webtorrent/http-node-1.3.0" sources."addr-to-ip-port-1.5.4" sources."airplay-js-0.3.0" @@ -134168,11 +134250,11 @@ in sources."b4a-1.5.0" sources."balanced-match-1.0.2" sources."base64-js-1.5.1" - sources."bencode-2.0.2" + sources."bencode-2.0.3" sources."bep53-range-1.1.1" sources."binary-search-1.3.6" sources."bitfield-4.1.0" - (sources."bittorrent-dht-10.0.2" // { + (sources."bittorrent-dht-10.0.4" // { dependencies = [ sources."debug-4.3.4" sources."ms-2.1.2" @@ -134265,7 +134347,6 @@ in }) sources."ee-first-1.1.1" sources."elementtree-0.1.7" - sources."emitter-component-1.1.1" sources."emoji-regex-8.0.0" sources."end-of-stream-1.4.4" sources."err-code-3.0.1" @@ -134284,7 +134365,7 @@ in sources."get-browser-rtc-1.1.0" sources."get-caller-file-2.0.5" sources."get-stdin-8.0.0" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."has-flag-4.0.0" sources."he-1.2.0" sources."http-parser-js-0.4.13" @@ -134337,7 +134418,7 @@ in sources."mp4-box-encoding-1.4.1" sources."mp4-stream-3.1.3" sources."ms-2.0.0" - (sources."multicast-dns-7.2.4" // { + (sources."multicast-dns-7.2.5" // { dependencies = [ sources."thunky-1.1.0" ]; @@ -134419,7 +134500,6 @@ in sources."speed-limiter-1.0.2" sources."speedometer-1.1.0" sources."split-1.0.1" - sources."stream-0.0.2" sources."stream-to-blob-2.0.1" sources."stream-to-blob-url-3.0.2" sources."stream-with-known-length-to-buffer-1.0.4" @@ -134431,7 +134511,7 @@ in sources."supports-color-7.2.0" sources."thirty-two-1.0.2" sources."through-2.3.8" - sources."throughput-1.0.0" + sources."throughput-1.0.1" sources."thunky-0.1.0" sources."timeout-refresh-1.0.3" sources."to-arraybuffer-1.0.1" @@ -134462,7 +134542,7 @@ in sources."utp-native-2.5.3" sources."videostream-3.2.2" sources."vlc-command-1.2.0" - (sources."webtorrent-1.8.19" // { + (sources."webtorrent-1.8.20" // { dependencies = [ sources."debug-4.3.4" sources."decompress-response-6.0.0" @@ -134479,7 +134559,7 @@ in sources."xmlbuilder-11.0.1" sources."xmldom-0.1.31" sources."y18n-5.0.8" - sources."yargs-17.5.0" + sources."yargs-17.5.1" sources."yargs-parser-21.0.1" ]; buildInputs = globalBuildInputs; @@ -134595,7 +134675,7 @@ in sources."fs-extra-8.1.0" sources."fs.realpath-1.0.0" sources."get-caller-file-2.0.5" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."graceful-fs-4.2.10" sources."has-flag-4.0.0" sources."ignore-5.2.0" @@ -134686,7 +134766,7 @@ in sources."@npmcli/installed-package-contents-1.0.7" (sources."@npmcli/map-workspaces-2.0.3" // { dependencies = [ - sources."minimatch-5.0.1" + sources."minimatch-5.1.0" ]; }) (sources."@npmcli/metavuln-calculator-2.0.0" // { @@ -134778,7 +134858,7 @@ in sources."builtins-1.0.3" (sources."cacache-15.3.0" // { dependencies = [ - sources."glob-7.2.0" + sources."glob-7.2.3" sources."mkdirp-1.0.4" ]; }) @@ -134883,7 +134963,7 @@ in sources."figures-2.0.0" (sources."filelist-1.0.4" // { dependencies = [ - sources."minimatch-5.0.1" + sources."minimatch-5.1.0" ]; }) sources."fill-range-7.0.1" @@ -134905,9 +134985,9 @@ in sources."get-stdin-4.0.1" sources."get-stream-4.1.0" sources."getpass-0.1.7" - (sources."glob-8.0.2" // { + (sources."glob-8.0.3" // { dependencies = [ - sources."minimatch-5.0.1" + sources."minimatch-5.1.0" ]; }) sources."glob-parent-5.1.2" @@ -135131,7 +135211,7 @@ in sources."are-we-there-yet-3.0.0" sources."env-paths-2.2.1" sources."gauge-4.0.4" - sources."glob-7.2.0" + sources."glob-7.2.3" sources."is-fullwidth-code-point-3.0.0" sources."npmlog-6.0.2" sources."readable-stream-3.6.0" @@ -135171,7 +135251,7 @@ in }) (sources."npm-packlist-3.0.0" // { dependencies = [ - sources."glob-7.2.0" + sources."glob-7.2.3" ]; }) (sources."npm-pick-manifest-6.1.1" // { @@ -135184,12 +135264,12 @@ in sources."@npmcli/fs-2.1.0" sources."@npmcli/move-file-2.0.0" sources."@tootallnate/once-2.0.0" - sources."cacache-16.0.7" + sources."cacache-16.1.0" sources."debug-4.3.4" sources."http-cache-semantics-4.1.0" sources."http-proxy-agent-5.0.0" sources."lru-cache-7.10.1" - (sources."make-fetch-happen-10.1.3" // { + (sources."make-fetch-happen-10.1.4" // { dependencies = [ sources."minipass-fetch-2.1.0" ]; @@ -135369,7 +135449,7 @@ in sources."reusify-1.0.4" (sources."rimraf-3.0.2" // { dependencies = [ - sources."glob-7.2.0" + sources."glob-7.2.3" ]; }) sources."roarr-2.15.4" @@ -135673,7 +135753,7 @@ in sources."@nodelib/fs.walk-1.2.8" sources."@types/fs-extra-9.0.13" sources."@types/minimist-1.2.2" - sources."@types/node-17.0.32" + sources."@types/node-17.0.34" sources."@types/which-2.0.1" sources."braces-3.0.2" sources."chalk-5.0.1" @@ -135718,7 +135798,7 @@ in sources."universalify-2.0.0" sources."web-streams-polyfill-3.2.1" sources."which-2.0.2" - sources."yaml-2.0.1" + sources."yaml-2.1.0" ]; buildInputs = globalBuildInputs; meta = { diff --git a/pkgs/development/node-packages/overrides.nix b/pkgs/development/node-packages/overrides.nix new file mode 100644 index 00000000000..7ddb3448601 --- /dev/null +++ b/pkgs/development/node-packages/overrides.nix @@ -0,0 +1,533 @@ +# Do not use overrides in this file to add `meta.mainProgram` to packges. Use `./main-programs.nix` +# instead. +{ pkgs, nodejs }: + +let + inherit (pkgs) + stdenv + lib + callPackage + fetchFromGitHub + fetchurl + nixosTests; + + since = version: lib.versionAtLeast nodejs.version version; + before = version: lib.versionOlder nodejs.version version; +in + +final: prev: { + "@angular/cli" = prev."@angular/cli".override { + prePatch = '' + export NG_CLI_ANALYTICS=false + ''; + }; + + "@electron-forge/cli" = prev."@electron-forge/cli".override { + buildInputs = [ final.node-gyp-build ]; + }; + + "@hyperspace/cli" = prev."@hyperspace/cli".override { + nativeBuildInputs = [ pkgs.makeWrapper ]; + buildInputs = [ final.node-gyp-build ]; + postInstall = ''wrapProgram "$out/bin/hyp" --prefix PATH : ${ lib.makeBinPath [ nodejs ] }''; + }; + hyperspace-cli = final."@hyperspace/cli"; + + "@medable/mdctl-cli" = prev."@medable/mdctl-cli".override { + nativeBuildInputs = with pkgs; with darwin.apple_sdk.frameworks; [ + glib + libsecret + pkg-config + ] ++ lib.optionals stdenv.isDarwin [ + AppKit + Security + ]; + buildInputs = [ + final.node-gyp-build + final.node-pre-gyp + nodejs + ]; + }; + mdctl-cli = final."@medable/mdctl-cli"; + + autoprefixer = prev.autoprefixer.override { + nativeBuildInputs = [ pkgs.makeWrapper ]; + postInstall = '' + wrapProgram "$out/bin/autoprefixer" \ + --prefix NODE_PATH : ${final.postcss}/lib/node_modules + ''; + passthru.tests = { + simple-execution = callPackage ./package-tests/autoprefixer.nix { inherit (final) autoprefixer; }; + }; + }; + + aws-azure-login = prev.aws-azure-login.override (oldAttrs: { + nativeBuildInputs = [ pkgs.makeWrapper ]; + prePatch = '' + export PUPPETEER_SKIP_CHROMIUM_DOWNLOAD=1 + ''; + postInstall = '' + wrapProgram $out/bin/aws-azure-login \ + --set PUPPETEER_EXECUTABLE_PATH ${pkgs.chromium}/bin/chromium + ''; + meta = oldAttrs.meta // { platforms = lib.platforms.linux; }; + }); + + bitwarden-cli = prev."@bitwarden/cli".override { + name = "bitwarden-cli"; + }; + + bower2nix = prev.bower2nix.override { + nativeBuildInputs = [ pkgs.makeWrapper ]; + postInstall = '' + for prog in bower2nix fetch-bower; do + wrapProgram "$out/bin/$prog" --prefix PATH : ${lib.makeBinPath [ pkgs.git pkgs.nix ]} + done + ''; + }; + + carbon-now-cli = prev.carbon-now-cli.override { + nativeBuildInputs = [ pkgs.makeWrapper ]; + prePatch = '' + export PUPPETEER_SKIP_CHROMIUM_DOWNLOAD=1 + ''; + postInstall = '' + wrapProgram $out/bin/carbon-now \ + --set PUPPETEER_EXECUTABLE_PATH ${pkgs.chromium.outPath}/bin/chromium + ''; + }; + + coc-imselect = prev.coc-imselect.override (oldAttrs: { + meta = oldAttrs.meta // { broken = since "10"; }; + }); + + dat = prev.dat.override (oldAttrs: { + buildInputs = [ final.node-gyp-build pkgs.libtool pkgs.autoconf pkgs.automake ]; + meta = oldAttrs.meta // { broken = since "12"; }; + }); + + deltachat-desktop = prev."deltachat-desktop-../../applications/networking/instant-messengers/deltachat-desktop".override (oldAttrs: { + meta = oldAttrs.meta // { broken = true; }; # use the top-level package instead + }); + + # NOTE: this is a stub package to fetch npm dependencies for + # ../../applications/video/epgstation + epgstation = prev."epgstation-../../applications/video/epgstation".override (oldAttrs: { + buildInputs = [ final.node-pre-gyp final.node-gyp-build ]; + meta = oldAttrs.meta // { platforms = lib.platforms.none; }; + }); + + # NOTE: this is a stub package to fetch npm dependencies for + # ../../applications/video/epgstation/client + epgstation-client = prev."epgstation-client-../../applications/video/epgstation/client".override (oldAttrs: { + meta = oldAttrs.meta // { platforms = lib.platforms.none; }; + }); + + expo-cli = prev."expo-cli".override (oldAttrs: { + # The traveling-fastlane-darwin optional dependency aborts build on Linux. + dependencies = builtins.filter (d: d.packageName != "@expo/traveling-fastlane-${if stdenv.isLinux then "darwin" else "linux"}") oldAttrs.dependencies; + }); + + fast-cli = prev.fast-cli.override { + nativeBuildInputs = [ pkgs.makeWrapper ]; + prePatch = '' + export PUPPETEER_SKIP_CHROMIUM_DOWNLOAD=1 + ''; + postInstall = '' + wrapProgram $out/bin/fast \ + --set PUPPETEER_EXECUTABLE_PATH ${pkgs.chromium.outPath}/bin/chromium + ''; + }; + + flood = prev.flood.override { + buildInputs = [ final.node-pre-gyp ]; + }; + + git-ssb = prev.git-ssb.override (oldAttrs: { + buildInputs = [ final.node-gyp-build ]; + meta = oldAttrs.meta // { broken = since "10"; }; + }); + + hsd = prev.hsd.override { + buildInputs = [ final.node-gyp-build pkgs.unbound ]; + }; + + ijavascript = prev.ijavascript.override (oldAttrs: { + preRebuild = '' + export NPM_CONFIG_ZMQ_EXTERNAL=true + ''; + buildInputs = oldAttrs.buildInputs ++ [ final.node-gyp-build pkgs.zeromq ]; + }); + + insect = prev.insect.override (oldAttrs: { + nativeBuildInputs = oldAttrs.nativeBuildInputs or [] ++ [ pkgs.psc-package final.pulp ]; + }); + + intelephense = prev.intelephense.override (oldAttrs: { + meta = oldAttrs.meta // { license = lib.licenses.unfree; }; + }); + + joplin = prev.joplin.override { + nativeBuildInputs = [ pkgs.pkg-config ]; + buildInputs = with pkgs; [ + # required by sharp + # https://sharp.pixelplumbing.com/install + vips + + libsecret + final.node-gyp-build + final.node-pre-gyp + ] ++ lib.optionals stdenv.isDarwin [ + darwin.apple_sdk.frameworks.AppKit + darwin.apple_sdk.frameworks.Security + ]; + }; + + jsonplaceholder = prev.jsonplaceholder.override { + buildInputs = [ nodejs ]; + postInstall = '' + exe=$out/bin/jsonplaceholder + mkdir -p $out/bin + cat >$exe <<EOF + #!${pkgs.runtimeShell} + exec -a jsonplaceholder ${nodejs}/bin/node $out/lib/node_modules/jsonplaceholder/index.js + EOF + chmod a+x $exe + ''; + }; + + makam = prev.makam.override { + nativeBuildInputs = [ pkgs.makeWrapper ]; + postFixup = '' + wrapProgram "$out/bin/makam" --prefix PATH : ${lib.makeBinPath [ nodejs ]} + ${ + if stdenv.isLinux + then "patchelf --set-interpreter ${stdenv.glibc}/lib/ld-linux-x86-64.so.2 \"$out/lib/node_modules/makam/makam-bin-linux64\"" + else "" + } + ''; + }; + + manta = prev.manta.override { + nativeBuildInputs = with pkgs; [ nodejs-14_x installShellFiles ]; + postInstall = '' + # create completions, following upstream procedure https://github.com/joyent/node-manta/blob/v5.2.3/Makefile#L85-L91 + completion_cmds=$(find ./bin -type f -printf "%f\n") + + node ./lib/create_client.js + for cmd in $completion_cmds; do + installShellCompletion --cmd $cmd --bash <(./bin/$cmd --completion) + done + ''; + }; + + mermaid-cli = prev."@mermaid-js/mermaid-cli".override ( + if stdenv.isDarwin + then {} + else { + nativeBuildInputs = [ pkgs.makeWrapper ]; + prePatch = '' + export PUPPETEER_SKIP_CHROMIUM_DOWNLOAD=1 + ''; + postInstall = '' + wrapProgram $out/bin/mmdc \ + --set PUPPETEER_EXECUTABLE_PATH ${pkgs.chromium.outPath}/bin/chromium + ''; + }); + + near-cli = prev.near-cli.override { + nativeBuildInputs = with pkgs; [ + libusb1 + final.prebuild-install + final.node-gyp-build + pkg-config + ]; + }; + + node-gyp = prev.node-gyp.override { + nativeBuildInputs = [ pkgs.makeWrapper ]; + # Teach node-gyp to use nodejs headers locally rather that download them form https://nodejs.org. + # This is important when build nodejs packages in sandbox. + postInstall = '' + wrapProgram "$out/bin/node-gyp" \ + --set npm_config_nodedir ${nodejs} + ''; + }; + + node-inspector = prev.node-inspector.override (oldAttrs: { + buildInputs = [ final.node-pre-gyp ]; + meta = oldAttrs.meta // { broken = since "10"; }; + }); + + node-red = prev.node-red.override { + buildInputs = [ final.node-pre-gyp ]; + }; + + node2nix = prev.node2nix.override { + nativeBuildInputs = [ pkgs.makeWrapper ]; + # We need to use master because of a fix that replaces git:// url to https://. + src = fetchFromGitHub { + owner = "svanderburg"; + repo = "node2nix"; + rev = "68f5735f9a56737e3fedceb182705985e3ab8799"; + sha256 = "sha256-NK6gDTkGx0GG7yPTwgtFC4ttQZPfcLaLp8W8OOMO6bg="; + }; + + postInstall = '' + wrapProgram "$out/bin/node2nix" --prefix PATH : ${lib.makeBinPath [ pkgs.nix ]} + ''; + }; + + parcel = prev.parcel.override { + buildInputs = [ final.node-gyp-build ]; + preRebuild = '' + sed -i -e "s|#!/usr/bin/env node|#! ${nodejs}/bin/node|" node_modules/node-gyp-build/bin.js + ''; + }; + + pnpm = prev.pnpm.override { + nativeBuildInputs = [ pkgs.makeWrapper ]; + + preRebuild = '' + sed 's/"link:/"file:/g' --in-place package.json + ''; + + postInstall = let + pnpmLibPath = lib.makeBinPath [ + nodejs.passthru.python + nodejs + ]; + in '' + for prog in $out/bin/*; do + wrapProgram "$prog" --prefix PATH : ${pnpmLibPath} + done + ''; + }; + + postcss-cli = prev.postcss-cli.override (oldAttrs: { + nativeBuildInputs = [ pkgs.makeWrapper ]; + postInstall = '' + wrapProgram "$out/bin/postcss" \ + --prefix NODE_PATH : ${final.postcss}/lib/node_modules \ + --prefix NODE_PATH : ${final.autoprefixer}/lib/node_modules + ln -s '${final.postcss}/lib/node_modules/postcss' "$out/lib/node_modules/postcss" + ''; + passthru.tests = { + simple-execution = callPackage ./package-tests/postcss-cli.nix { + inherit (final) postcss-cli; + }; + }; + meta = oldAttrs.meta // { maintainers = with lib.maintainers; [ Luflosi ]; }; + }); + + # To update prisma, please first update prisma-engines to the latest + # version. Then change the correct hash to this package. The PR should hold + # two commits: one for the engines and the other one for the node package. + prisma = prev.prisma.override rec { + nativeBuildInputs = [ pkgs.makeWrapper ]; + + inherit (pkgs.prisma-engines) version; + + src = fetchurl { + url = "https://registry.npmjs.org/prisma/-/prisma-${version}.tgz"; + sha512 = "sha512-l9MOgNCn/paDE+i1K2fp9NZ+Du4trzPTJsGkaQHVBufTGqzoYHuNk8JfzXuIn0Gte6/ZjyKj652Jq/Lc1tp2yw=="; + }; + postInstall = with pkgs; '' + wrapProgram "$out/bin/prisma" \ + --set PRISMA_MIGRATION_ENGINE_BINARY ${prisma-engines}/bin/migration-engine \ + --set PRISMA_QUERY_ENGINE_BINARY ${prisma-engines}/bin/query-engine \ + --set PRISMA_QUERY_ENGINE_LIBRARY ${lib.getLib prisma-engines}/lib/libquery_engine.node \ + --set PRISMA_INTROSPECTION_ENGINE_BINARY ${prisma-engines}/bin/introspection-engine \ + --set PRISMA_FMT_BINARY ${prisma-engines}/bin/prisma-fmt + ''; + + passthru.tests = { + simple-execution = pkgs.callPackage ./package-tests/prisma.nix { + inherit (final) prisma; + }; + }; + }; + + pulp = prev.pulp.override { + # tries to install purescript + npmFlags = "--ignore-scripts"; + + nativeBuildInputs = [ pkgs.makeWrapper ]; + postInstall = '' + wrapProgram "$out/bin/pulp" --suffix PATH : ${lib.makeBinPath [ + pkgs.purescript + ]} + ''; + }; + + reveal-md = prev.reveal-md.override ( + lib.optionalAttrs (!stdenv.isDarwin) { + nativeBuildInputs = [ pkgs.makeWrapper ]; + prePatch = '' + export PUPPETEER_SKIP_CHROMIUM_DOWNLOAD=1 + ''; + postInstall = '' + wrapProgram $out/bin/reveal-md \ + --set PUPPETEER_EXECUTABLE_PATH ${pkgs.chromium.outPath}/bin/chromium + ''; + } + ); + + ssb-server = prev.ssb-server.override (oldAttrs: { + buildInputs = [ pkgs.automake pkgs.autoconf final.node-gyp-build ]; + meta = oldAttrs.meta // { broken = since "10"; }; + }); + + stf = prev.stf.override (oldAttrs: { + meta = oldAttrs.meta // { broken = since "10"; }; + }); + + tailwindcss = prev.tailwindcss.override { + plugins = [ ]; + nativeBuildInputs = [ pkgs.makeWrapper ]; + postInstall = '' + nodePath="" + for p in "$out" "${final.postcss}" $plugins; do + nodePath="$nodePath''${nodePath:+:}$p/lib/node_modules" + done + wrapProgram "$out/bin/tailwind" \ + --prefix NODE_PATH : "$nodePath" + wrapProgram "$out/bin/tailwindcss" \ + --prefix NODE_PATH : "$nodePath" + unset nodePath + ''; + passthru.tests = { + simple-execution = callPackage ./package-tests/tailwindcss.nix { + inherit (final) tailwindcss; + }; + }; + }; + + teck-programmer = prev.teck-programmer.override { + nativeBuildInputs = [ final.node-gyp-build ]; + buildInputs = [ pkgs.libusb1 ]; + }; + + tedicross = prev."tedicross-git+https://github.com/TediCross/TediCross.git#v0.8.7".override { + nativeBuildInputs = [ pkgs.makeWrapper ]; + postInstall = '' + makeWrapper '${nodejs}/bin/node' "$out/bin/tedicross" \ + --add-flags "$out/lib/node_modules/tedicross/main.js" + ''; + }; + + thelounge = prev.thelounge.override (oldAttrs: { + buildInputs = [ final.node-pre-gyp ]; + postInstall = '' + echo /var/lib/thelounge > $out/lib/node_modules/thelounge/.thelounge_home + patch -d $out/lib/node_modules/thelounge -p1 < ${./thelounge-packages-path.patch} + ''; + passthru.tests = { inherit (nixosTests) thelounge; }; + meta = oldAttrs.meta // { maintainers = with lib.maintainers; [ winter ]; }; + }); + + thelounge-plugin-closepms = prev.thelounge-plugin-closepms.override { + nativeBuildInputs = [ final.node-pre-gyp ]; + }; + + thelounge-plugin-giphy = prev.thelounge-plugin-giphy.override { + nativeBuildInputs = [ final.node-pre-gyp ]; + }; + + thelounge-theme-flat-blue = prev.thelounge-theme-flat-blue.override { + nativeBuildInputs = [ final.node-pre-gyp ]; + }; + + thelounge-theme-flat-dark = prev.thelounge-theme-flat-dark.override { + nativeBuildInputs = [ final.node-pre-gyp ]; + }; + + triton = prev.triton.override { + nativeBuildInputs = [ pkgs.installShellFiles ]; + postInstall = '' + installShellCompletion --cmd triton --bash <($out/bin/triton completion) + ''; + }; + + ts-node = prev.ts-node.override { + nativeBuildInputs = [ pkgs.makeWrapper ]; + postInstall = '' + wrapProgram "$out/bin/ts-node" \ + --prefix NODE_PATH : ${final.typescript}/lib/node_modules + ''; + }; + + tsun = prev.tsun.override { + nativeBuildInputs = [ pkgs.makeWrapper ]; + postInstall = '' + wrapProgram "$out/bin/tsun" \ + --prefix NODE_PATH : ${final.typescript}/lib/node_modules + ''; + }; + + typescript-language-server = prev.typescript-language-server.override { + nativeBuildInputs = [ pkgs.makeWrapper ]; + postInstall = '' + wrapProgram "$out/bin/typescript-language-server" \ + --suffix PATH : ${lib.makeBinPath [ final.typescript ]} + ''; + }; + + uppy-companion = prev."@uppy/companion".override { + name = "uppy-companion"; + }; + + vega-cli = prev.vega-cli.override { + nativeBuildInputs = [ pkgs.pkg-config ]; + buildInputs = with pkgs; [ + final.node-pre-gyp + pixman + cairo + pango + libjpeg + ] ++ lib.optionals stdenv.isDarwin [ + darwin.apple_sdk.frameworks.CoreText + ]; + }; + + vega-lite = prev.vega-lite.override { + postInstall = '' + cd node_modules + for dep in ${final.vega-cli}/lib/node_modules/vega-cli/node_modules/*; do + if [[ ! -d $dep ]]; then + ln -s "${final.vega-cli}/lib/node_modules/vega-cli/node_modules/$dep" + fi + done + ''; + passthru.tests = { + simple-execution = callPackage ./package-tests/vega-lite.nix { + inherit (final) vega-lite; + }; + }; + }; + + wavedrom-cli = prev.wavedrom-cli.override { + nativeBuildInputs = [ pkgs.pkg-config final.node-pre-gyp ]; + # These dependencies are required by + # https://github.com/Automattic/node-canvas. + buildInputs = with pkgs; [ + pixman + cairo + pango + ] ++ lib.optionals stdenv.isDarwin [ + darwin.apple_sdk.frameworks.CoreText + ]; + }; + + webtorrent-cli = prev.webtorrent-cli.override { + buildInputs = [ final.node-gyp-build ]; + }; + + yaml-language-server = prev.yaml-language-server.override { + nativeBuildInputs = [ pkgs.makeWrapper ]; + postInstall = '' + wrapProgram "$out/bin/yaml-language-server" \ + --prefix NODE_PATH : ${final.prettier}/lib/node_modules + ''; + }; +} diff --git a/pkgs/development/node-packages/package-tests/prisma.nix b/pkgs/development/node-packages/package-tests/prisma.nix new file mode 100644 index 00000000000..35a5516a3b5 --- /dev/null +++ b/pkgs/development/node-packages/package-tests/prisma.nix @@ -0,0 +1,56 @@ +{ lib, pkgs, runCommand, prisma }: + +let + inherit (prisma) packageName; + prismaMajorVersion = lib.versions.majorMinor prisma.version; + enginesMajorVersion = lib.versions.majorMinor pkgs.prisma-engines.version; +in + +runCommand "${packageName}-tests" { + nativeBuildInputs = with pkgs; [ prisma sqlite-interactive ]; + meta.timeout = 60; +} + '' + mkdir $out + cd $out + + if [ "${prismaMajorVersion}" != "${enginesMajorVersion}" ]; then + echo "nodePackages.prisma in version ${prismaMajorVersion} and prisma-engines in ${enginesMajorVersion}. Major versions must match." + exit 1 + fi + + # Ensure CLI runs + prisma --help > /dev/null + + # Init a new project + prisma init > /dev/null + + # Create a simple data model + cat << EOF > prisma/schema.prisma + datasource db { + provider = "sqlite" + url = "file:test.db" + } + + generator js { + provider = "prisma-client-js" + } + + model A { + id Int @id @default(autoincrement()) + b String @default("foo") + } + EOF + + # Format + prisma format > /dev/null + + # Create the database + prisma db push --skip-generate > /dev/null + + # The database file should exist and be a SQLite database + sqlite3 prisma/test.db "SELECT id, b FROM A" > /dev/null + + # Introspect the database + prisma db pull > /dev/null + '' diff --git a/pkgs/development/ocaml-modules/atd/default.nix b/pkgs/development/ocaml-modules/atd/default.nix index 5ff5496ed6f..81b9567fcdc 100644 --- a/pkgs/development/ocaml-modules/atd/default.nix +++ b/pkgs/development/ocaml-modules/atd/default.nix @@ -17,9 +17,10 @@ buildDunePackage rec { }; meta = with lib; { - homepage = "https://github.com/mjambon/atd"; description = "Syntax for cross-language type definitions"; + homepage = "https://github.com/mjambon/atd"; license = licenses.mit; maintainers = with maintainers; [ aij jwilberding ]; + mainProgram = "atdcat"; }; } diff --git a/pkgs/development/ocaml-modules/atdgen/default.nix b/pkgs/development/ocaml-modules/atdgen/default.nix index f35e6617a9b..807276d31b2 100644 --- a/pkgs/development/ocaml-modules/atdgen/default.nix +++ b/pkgs/development/ocaml-modules/atdgen/default.nix @@ -11,7 +11,7 @@ buildDunePackage { doCheck = true; checkInputs = [ alcotest atdgen-codec-runtime ]; - meta = atd.meta // { + meta = (builtins.removeAttrs atd.meta [ "mainProgram" ]) // { description = "Generates efficient JSON serializers, deserializers and validators"; }; } diff --git a/pkgs/development/ocaml-modules/awa/default.nix b/pkgs/development/ocaml-modules/awa/default.nix index d870ab86505..9795b24350c 100644 --- a/pkgs/development/ocaml-modules/awa/default.nix +++ b/pkgs/development/ocaml-modules/awa/default.nix @@ -32,9 +32,9 @@ buildDunePackage rec { meta = with lib; { description = "SSH implementation in OCaml"; - license = licenses.isc; homepage = "https://github.com/mirage/awa-ssh"; changelog = "https://github.com/mirage/awa-ssh/raw/v${version}/CHANGES.md"; + license = licenses.isc; maintainers = [ maintainers.sternenseemann ]; }; } diff --git a/pkgs/development/ocaml-modules/awa/lwt.nix b/pkgs/development/ocaml-modules/awa/lwt.nix index 00be799ddff..9f32d9571f7 100644 --- a/pkgs/development/ocaml-modules/awa/lwt.nix +++ b/pkgs/development/ocaml-modules/awa/lwt.nix @@ -11,5 +11,5 @@ buildDunePackage { awa cstruct mtime lwt cstruct-unix mirage-crypto-rng ]; - inherit (awa) meta; + meta = awa.meta // { mainProgram = "awa_lwt_server"; }; } diff --git a/pkgs/development/ocaml-modules/bap/default.nix b/pkgs/development/ocaml-modules/bap/default.nix index 52287277276..4f87715a74a 100644 --- a/pkgs/development/ocaml-modules/bap/default.nix +++ b/pkgs/development/ocaml-modules/bap/default.nix @@ -75,7 +75,8 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Platform for binary analysis. It is written in OCaml, but can be used from other languages."; homepage = "https://github.com/BinaryAnalysisPlatform/bap/"; - maintainers = [ maintainers.maurer ]; license = licenses.mit; + maintainers = [ maintainers.maurer ]; + mainProgram = "bap"; }; } diff --git a/pkgs/development/ocaml-modules/bisect_ppx/default.nix b/pkgs/development/ocaml-modules/bisect_ppx/default.nix index 48b9684902c..fdfc61e73c3 100644 --- a/pkgs/development/ocaml-modules/bisect_ppx/default.nix +++ b/pkgs/development/ocaml-modules/bisect_ppx/default.nix @@ -21,8 +21,9 @@ buildDunePackage rec { meta = with lib; { description = "Bisect_ppx is a code coverage tool for OCaml and Reason. It helps you test thoroughly by showing what's not tested."; - license = licenses.mit; homepage = "https://github.com/aantron/bisect_ppx"; + license = licenses.mit; maintainers = with maintainers; [ ]; + mainProgram = "bisect-ppx-report"; }; } diff --git a/pkgs/development/ocaml-modules/ca-certs-nss/default.nix b/pkgs/development/ocaml-modules/ca-certs-nss/default.nix index 987c325ee00..9c71ca476c9 100644 --- a/pkgs/development/ocaml-modules/ca-certs-nss/default.nix +++ b/pkgs/development/ocaml-modules/ca-certs-nss/default.nix @@ -43,9 +43,10 @@ buildDunePackage rec { checkInputs = [ alcotest ]; meta = with lib; { - license = licenses.isc; description = "X.509 trust anchors extracted from Mozilla's NSS"; - maintainers = [ maintainers.sternenseemann ]; homepage = "https://github.com/mirage/ca-certs-nss"; + license = licenses.isc; + maintainers = [ maintainers.sternenseemann ]; + mainProgram = "extract-from-certdata"; }; } diff --git a/pkgs/development/ocaml-modules/checkseum/default.nix b/pkgs/development/ocaml-modules/checkseum/default.nix index 3a07707a4cd..13d9f2829af 100644 --- a/pkgs/development/ocaml-modules/checkseum/default.nix +++ b/pkgs/development/ocaml-modules/checkseum/default.nix @@ -39,9 +39,10 @@ buildDunePackage rec { doCheck = true; meta = { - homepage = "https://github.com/mirage/checkseum"; description = "ADLER-32 and CRC32C Cyclic Redundancy Check"; + homepage = "https://github.com/mirage/checkseum"; license = lib.licenses.mit; maintainers = [ lib.maintainers.vbgl ]; + mainProgram = "checkseum.checkseum"; }; } diff --git a/pkgs/development/ocaml-modules/coin/default.nix b/pkgs/development/ocaml-modules/coin/default.nix index 0ff2ce94041..5996cd7adb6 100644 --- a/pkgs/development/ocaml-modules/coin/default.nix +++ b/pkgs/development/ocaml-modules/coin/default.nix @@ -30,8 +30,9 @@ buildDunePackage rec { meta = { description = "A library to normalize an KOI8-{U,R} input to Unicode"; - license = lib.licenses.mit; homepage = "https://github.com/mirage/coin"; + license = lib.licenses.mit; maintainers = with lib.maintainers; [ ]; + mainProgram = "coin.generate"; }; } diff --git a/pkgs/development/ocaml-modules/cpdf/default.nix b/pkgs/development/ocaml-modules/cpdf/default.nix index 360848881a9..d9960f732c7 100644 --- a/pkgs/development/ocaml-modules/cpdf/default.nix +++ b/pkgs/development/ocaml-modules/cpdf/default.nix @@ -31,10 +31,11 @@ stdenv.mkDerivation rec { ''; meta = with lib; { - homepage = "https://www.coherentpdf.com/"; - inherit (ocaml.meta) platforms; description = "PDF Command Line Tools"; + homepage = "https://www.coherentpdf.com/"; license = licenses.unfree; maintainers = [ maintainers.vbgl ]; + mainProgram = "cpdf"; + inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/decompress/default.nix b/pkgs/development/ocaml-modules/decompress/default.nix index 7629349c1d1..f329a0ff013 100644 --- a/pkgs/development/ocaml-modules/decompress/default.nix +++ b/pkgs/development/ocaml-modules/decompress/default.nix @@ -23,8 +23,9 @@ buildDunePackage rec { meta = { description = "Pure OCaml implementation of Zlib"; + homepage = "https://github.com/mirage/decompress"; license = lib.licenses.mit; maintainers = [ lib.maintainers.vbgl ]; - homepage = "https://github.com/mirage/decompress"; + mainProgram = "decompress.pipe"; }; } diff --git a/pkgs/development/ocaml-modules/dns/cli.nix b/pkgs/development/ocaml-modules/dns/cli.nix index 6e149180642..f9fc8e21d2b 100644 --- a/pkgs/development/ocaml-modules/dns/cli.nix +++ b/pkgs/development/ocaml-modules/dns/cli.nix @@ -44,5 +44,6 @@ buildDunePackage { meta = dns.meta // { description = "Unix command line utilities using uDNS"; + mainProgram = "odns"; }; } diff --git a/pkgs/development/ocaml-modules/dns/client.nix b/pkgs/development/ocaml-modules/dns/client.nix index a6dc40de24e..5178360f7b5 100644 --- a/pkgs/development/ocaml-modules/dns/client.nix +++ b/pkgs/development/ocaml-modules/dns/client.nix @@ -16,5 +16,6 @@ buildDunePackage { meta = dns.meta // { description = "Pure DNS resolver API"; + mainProgram = "dns-client.unix"; }; } diff --git a/pkgs/development/ocaml-modules/earley/default.nix b/pkgs/development/ocaml-modules/earley/default.nix index c7b2d09d667..0d365c8036d 100644 --- a/pkgs/development/ocaml-modules/earley/default.nix +++ b/pkgs/development/ocaml-modules/earley/default.nix @@ -21,8 +21,9 @@ buildDunePackage rec { meta = { description = "Parser combinators based on Earley Algorithm"; + homepage = "https://github.com/rlepigre/ocaml-earley"; license = lib.licenses.cecill-b; maintainers = [ lib.maintainers.vbgl ]; - homepage = "https://github.com/rlepigre/ocaml-earley"; + mainProgram = "pa_ocaml"; }; } diff --git a/pkgs/development/ocaml-modules/easy-format/default.nix b/pkgs/development/ocaml-modules/easy-format/default.nix index a3fb9722965..7e3fe5f483e 100644 --- a/pkgs/development/ocaml-modules/easy-format/default.nix +++ b/pkgs/development/ocaml-modules/easy-format/default.nix @@ -1,12 +1,22 @@ -{ lib, fetchurl, buildDunePackage }: +{ lib, fetchurl, ocaml, buildDunePackage }: + +let params = + if lib.versionAtLeast ocaml.version "4.08" then { + version = "1.3.3"; + sha256 = "sha256:05n4mm1yz33h9gw811ivjw7x4m26lpmf7kns9lza4v6227lwmz7a"; + } else { + version = "1.3.2"; + sha256 = "sha256:09hrikx310pac2sb6jzaa7k6fmiznnmhdsqij1gawdymhawc4h1l"; + }; +in buildDunePackage rec { pname = "easy-format"; - version = "1.3.2"; + inherit (params) version; src = fetchurl { url = "https://github.com/ocaml-community/easy-format/releases/download/${version}/easy-format-${version}.tbz"; - sha256 = "sha256:09hrikx310pac2sb6jzaa7k6fmiznnmhdsqij1gawdymhawc4h1l"; + inherit (params) sha256; }; doCheck = true; diff --git a/pkgs/development/ocaml-modules/genspio/default.nix b/pkgs/development/ocaml-modules/genspio/default.nix index 963cd1dab13..44742cba04a 100644 --- a/pkgs/development/ocaml-modules/genspio/default.nix +++ b/pkgs/development/ocaml-modules/genspio/default.nix @@ -1,27 +1,19 @@ { lib, fetchFromGitHub, buildDunePackage -, nonstd, sosa +, base, fmt }: buildDunePackage rec { pname = "genspio"; - version = "0.0.2"; - - useDune2 = false; + version = "0.0.3"; src = fetchFromGitHub { owner = "hammerlab"; repo = pname; rev = "${pname}.${version}"; - sha256 = "0cp6p1f713sfv4p2r03bzvjvakzn4ili7hf3a952b3w1k39hv37x"; + sha256 = "sha256:1788cnn10idp5i1hggg4pys7k0w8m3h2p4xa42jipfg4cpj7shaf"; }; - minimalOCamlVersion = "4.03"; - - propagatedBuildInputs = [ nonstd sosa ]; - - configurePhase = '' - ocaml please.mlt configure - ''; + propagatedBuildInputs = [ base fmt ]; doCheck = true; diff --git a/pkgs/development/ocaml-modules/graphql_ppx/default.nix b/pkgs/development/ocaml-modules/graphql_ppx/default.nix index aa149d60e4d..5c38602e8df 100644 --- a/pkgs/development/ocaml-modules/graphql_ppx/default.nix +++ b/pkgs/development/ocaml-modules/graphql_ppx/default.nix @@ -4,7 +4,7 @@ buildDunePackage rec { pname = "graphql_ppx"; - version = "1.2.0"; + version = "1.2.2"; minimalOCamlVersion = "4.08"; @@ -12,7 +12,7 @@ buildDunePackage rec { owner = "reasonml-community"; repo = "graphql-ppx"; rev = "v${version}"; - sha256 = "1fymmvk616wv5xkwfdmqibdgfl47ry6idc5wfh20a3mz9mpaa13s"; + sha256 = "sha256-+WJhA2ixZHiSZBoX14dnQKk7JfVAIME4JooNSnhRp44="; }; buildInputs = [ ppxlib ]; diff --git a/pkgs/development/ocaml-modules/hidapi/default.nix b/pkgs/development/ocaml-modules/hidapi/default.nix index 44b1d5f150a..b4492f438cc 100644 --- a/pkgs/development/ocaml-modules/hidapi/default.nix +++ b/pkgs/development/ocaml-modules/hidapi/default.nix @@ -24,9 +24,10 @@ buildDunePackage rec { doCheck = true; meta = with lib; { - homepage = "https://github.com/vbmithr/ocaml-hidapi"; description = "Bindings to Signal11's hidapi library"; + homepage = "https://github.com/vbmithr/ocaml-hidapi"; license = licenses.isc; maintainers = [ maintainers.alexfmpe ]; + mainProgram = "ocaml-hid-enumerate"; }; } diff --git a/pkgs/development/ocaml-modules/hxd/default.nix b/pkgs/development/ocaml-modules/hxd/default.nix index 0b05a83dd7e..7840bb4ff19 100644 --- a/pkgs/development/ocaml-modules/hxd/default.nix +++ b/pkgs/development/ocaml-modules/hxd/default.nix @@ -35,5 +35,6 @@ buildDunePackage rec { homepage = "https://github.com/dinosaure/hxd"; license = licenses.mit; maintainers = [ maintainers.sternenseemann ]; + mainProgram = "hxd.xxd"; }; } diff --git a/pkgs/development/ocaml-modules/imagelib/default.nix b/pkgs/development/ocaml-modules/imagelib/default.nix index 580db48769e..a2debdaf492 100644 --- a/pkgs/development/ocaml-modules/imagelib/default.nix +++ b/pkgs/development/ocaml-modules/imagelib/default.nix @@ -21,8 +21,9 @@ buildDunePackage rec { meta = { description = "Image formats such as PNG and PPM in OCaml"; + homepage = "https://github.com/rlepigre/ocaml-imagelib"; license = lib.licenses.lgpl3; maintainers = [ lib.maintainers.vbgl ]; - homepage = "https://github.com/rlepigre/ocaml-imagelib"; + mainProgram = "imagetool"; }; } diff --git a/pkgs/development/ocaml-modules/irmin/pack.nix b/pkgs/development/ocaml-modules/irmin/pack.nix index 5955dda8ed9..12934007cf1 100644 --- a/pkgs/development/ocaml-modules/irmin/pack.nix +++ b/pkgs/development/ocaml-modules/irmin/pack.nix @@ -20,6 +20,7 @@ buildDunePackage rec { meta = irmin.meta // { description = "Irmin backend which stores values in a pack file"; + mainProgram = "irmin_fsck"; }; } diff --git a/pkgs/development/ocaml-modules/irmin/unix.nix b/pkgs/development/ocaml-modules/irmin/unix.nix index 89cf36979bd..2906e77b1b6 100644 --- a/pkgs/development/ocaml-modules/irmin/unix.nix +++ b/pkgs/development/ocaml-modules/irmin/unix.nix @@ -26,6 +26,7 @@ buildDunePackage rec { meta = irmin.meta // { description = "Unix backends for Irmin"; + mainProgram = "irmin"; }; } diff --git a/pkgs/development/ocaml-modules/janestreet/0.14.nix b/pkgs/development/ocaml-modules/janestreet/0.14.nix index cee30da45c9..b9a19f13410 100644 --- a/pkgs/development/ocaml-modules/janestreet/0.14.nix +++ b/pkgs/development/ocaml-modules/janestreet/0.14.nix @@ -405,7 +405,10 @@ with self; pname = "ppx_base"; hash = "1wv3q0qyghm0c5izq03y97lv3czqk116059mg62wx6valn22a000"; minimumOCamlVersion = "4.04.2"; - meta.description = "Base set of ppx rewriters"; + meta = { + description = "Base set of ppx rewriters"; + mainProgram = "ppx-base"; + }; propagatedBuildInputs = [ ppx_cold ppx_enumerate ppx_hash ppx_js_style ]; }; @@ -519,7 +522,10 @@ with self; pname = "ppx_jane"; hash = "1kk238fvrcylymwm7xwc7llbyspmx1y662ypq00vy70g112rir7j"; minimumOCamlVersion = "4.04.2"; - meta.description = "Standard Jane Street ppx rewriters"; + meta = { + description = "Standard Jane Street ppx rewriters"; + mainProgram = "ppx-jane"; + }; propagatedBuildInputs = [ base_quickcheck ppx_bin_prot ppx_expect ppx_fixed_literal ppx_module_timer ppx_optcomp ppx_optional ppx_pipebang ppx_stable ppx_string ppx_typerep_conv ppx_variants_conv ]; }; diff --git a/pkgs/development/ocaml-modules/lablgl/default.nix b/pkgs/development/ocaml-modules/lablgl/default.nix index fa525dbba81..b010272b54b 100644 --- a/pkgs/development/ocaml-modules/lablgl/default.nix +++ b/pkgs/development/ocaml-modules/lablgl/default.nix @@ -39,10 +39,11 @@ stdenv.mkDerivation rec { ''; meta = with lib; { - homepage = "http://wwwfun.kurims.kyoto-u.ac.jp/soft/lsl/lablgl.html"; description = "OpenGL bindings for ocaml"; + homepage = "http://wwwfun.kurims.kyoto-u.ac.jp/soft/lsl/lablgl.html"; license = licenses.gpl2; maintainers = with maintainers; [ pSub vbgl ]; + mainProgram = "lablglut"; broken = stdenv.isDarwin; }; } diff --git a/pkgs/development/ocaml-modules/lablgtk/default.nix b/pkgs/development/ocaml-modules/lablgtk/default.nix index 7eb94bc188a..f82548b1883 100644 --- a/pkgs/development/ocaml-modules/lablgtk/default.nix +++ b/pkgs/development/ocaml-modules/lablgtk/default.nix @@ -37,12 +37,11 @@ stdenv.mkDerivation { dontStrip = true; meta = with lib; { - inherit (ocaml.meta) platforms; - maintainers = with maintainers; [ - maggesi roconnor vbgl - ]; - homepage = "http://lablgtk.forge.ocamlcore.org/"; description = "An OCaml interface to GTK"; + homepage = "http://lablgtk.forge.ocamlcore.org/"; license = licenses.lgpl21Plus; + maintainers = with maintainers; [ maggesi roconnor vbgl ]; + mainProgram = "lablgtk2"; + inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/labltk/default.nix b/pkgs/development/ocaml-modules/labltk/default.nix index 56e79ffc590..90bd678f287 100644 --- a/pkgs/development/ocaml-modules/labltk/default.nix +++ b/pkgs/development/ocaml-modules/labltk/default.nix @@ -42,6 +42,10 @@ let version = "8.06.11"; sha256 = "1zjpg9jvs6i9jvbgn6zgispwqiv8rxvaszxcx9ha9fax3wzhv9qy"; }; + "4.14" = mkNewParam { + version = "8.06.12"; + sha256 = "sha256:17fmb13l18isgwr38hg9r5a0nayf2hhw6acj5153cy1sygsdg3b5"; + }; }; param = params . ${lib.versions.majorMinor ocaml.version} or (throw "labltk is not available for OCaml ${ocaml.version}"); diff --git a/pkgs/development/ocaml-modules/lambda-term/default.nix b/pkgs/development/ocaml-modules/lambda-term/default.nix index b7ed4f24b1d..e44fdbe3ee8 100644 --- a/pkgs/development/ocaml-modules/lambda-term/default.nix +++ b/pkgs/development/ocaml-modules/lambda-term/default.nix @@ -25,7 +25,8 @@ buildDunePackage rec { propagatedBuildInputs = [ zed lwt_log lwt_react mew_vi ]; - meta = { description = "Terminal manipulation library for OCaml"; + meta = { + description = "Terminal manipulation library for OCaml"; longDescription = '' Lambda-term is a cross-platform library for manipulating the terminal. It provides an abstraction for keys, @@ -43,8 +44,7 @@ buildDunePackage rec { inherit (src.meta) homepage; license = lib.licenses.bsd3; - maintainers = [ - lib.maintainers.gal_bolle - ]; + maintainers = [ lib.maintainers.gal_bolle ]; + mainProgram = "lambda-term-actions"; }; } diff --git a/pkgs/development/ocaml-modules/letsencrypt/app.nix b/pkgs/development/ocaml-modules/letsencrypt/app.nix index de1dbbb8c84..1f6cc6e2b10 100644 --- a/pkgs/development/ocaml-modules/letsencrypt/app.nix +++ b/pkgs/development/ocaml-modules/letsencrypt/app.nix @@ -43,5 +43,6 @@ buildDunePackage { meta = letsencrypt.meta // { description = "An ACME client implementation of the ACME protocol (RFC 8555) for OCaml"; + mainProgram = "oacmel"; }; } diff --git a/pkgs/development/ocaml-modules/lustre-v6/default.nix b/pkgs/development/ocaml-modules/lustre-v6/default.nix index 4eeb01e9f3b..3cc7a25a36a 100644 --- a/pkgs/development/ocaml-modules/lustre-v6/default.nix +++ b/pkgs/development/ocaml-modules/lustre-v6/default.nix @@ -20,9 +20,10 @@ buildDunePackage rec { ]; meta = with lib; { - homepage = "https://www-verimag.imag.fr/lustre-v6.html"; description = "Lustre V6 compiler"; + homepage = "https://www-verimag.imag.fr/lustre-v6.html"; license = lib.licenses.cecill21; maintainers = [ lib.maintainers.delta ]; + mainProgram = "lv6"; }; } diff --git a/pkgs/development/ocaml-modules/lutils/default.nix b/pkgs/development/ocaml-modules/lutils/default.nix index 492a987dc9c..c462eb9fe15 100644 --- a/pkgs/development/ocaml-modules/lutils/default.nix +++ b/pkgs/development/ocaml-modules/lutils/default.nix @@ -21,5 +21,6 @@ buildDunePackage rec { homepage = "https://gricad-gitlab.univ-grenoble-alpes.fr/verimag/synchrone/lutils/"; description = "Tools and libs shared by Verimag/synchronous tools (lustre, lutin, rdbg)"; license = lib.licenses.cecill21; + mainProgram = "gnuplot-rif"; }; } diff --git a/pkgs/development/ocaml-modules/lwt/default.nix b/pkgs/development/ocaml-modules/lwt/default.nix index 5f1059395ab..6afc65e386e 100644 --- a/pkgs/development/ocaml-modules/lwt/default.nix +++ b/pkgs/development/ocaml-modules/lwt/default.nix @@ -8,15 +8,13 @@ let inherit (lib) optional versionOlder; in buildDunePackage rec { pname = "lwt"; - version = "5.4.1"; - - useDune2 = true; + version = "5.5.0"; src = fetchFromGitHub { owner = "ocsigen"; repo = "lwt"; rev = version; - sha256 = "sha256-XpoRKcdNo2j05Gxm5wmKSdwqimFDSWvmLyooPYTHAjM="; + sha256 = "sha256:1jbjz2rsz3j56k8vh5qlmm87hhkr250bs2m3dvpy9vsri8rkzj9z"; }; strictDeps = true; diff --git a/pkgs/development/ocaml-modules/mdx/default.nix b/pkgs/development/ocaml-modules/mdx/default.nix index 09f505c0e25..fc1ecb5e076 100644 --- a/pkgs/development/ocaml-modules/mdx/default.nix +++ b/pkgs/development/ocaml-modules/mdx/default.nix @@ -31,10 +31,11 @@ buildDunePackage rec { ''; meta = { - homepage = "https://github.com/realworldocaml/mdx"; description = "Executable OCaml code blocks inside markdown files"; + homepage = "https://github.com/realworldocaml/mdx"; changelog = "https://github.com/realworldocaml/mdx/raw/${version}/CHANGES.md"; license = lib.licenses.isc; maintainers = [ lib.maintainers.romildo ]; + mainProgram = "ocaml-mdx"; }; } diff --git a/pkgs/development/ocaml-modules/mrmime/default.nix b/pkgs/development/ocaml-modules/mrmime/default.nix index a5c2a68ee47..50cd04ddb0a 100644 --- a/pkgs/development/ocaml-modules/mrmime/default.nix +++ b/pkgs/development/ocaml-modules/mrmime/default.nix @@ -67,8 +67,9 @@ buildDunePackage rec { meta = { description = "Parser and generator of mail in OCaml"; - license = lib.licenses.mit; homepage = "https://github.com/mirage/mrmime"; - maintainers = with lib.maintainers; [ ]; + license = lib.licenses.mit; + maintainers = [ ]; + mainProgram = "mrmime.generate"; }; } diff --git a/pkgs/development/ocaml-modules/ocaml-gettext/camomile.nix b/pkgs/development/ocaml-modules/ocaml-gettext/camomile.nix index 012f3b61ff3..d3606330019 100644 --- a/pkgs/development/ocaml-modules/ocaml-gettext/camomile.nix +++ b/pkgs/development/ocaml-modules/ocaml-gettext/camomile.nix @@ -9,7 +9,7 @@ buildDunePackage { doCheck = true; checkInputs = [ ounit fileutils ]; - meta = ocaml_gettext.meta // { + meta = (builtins.removeAttrs ocaml_gettext.meta [ "mainProgram" ]) // { description = "Internationalization library using camomile (i18n)"; }; diff --git a/pkgs/development/ocaml-modules/ocaml-gettext/default.nix b/pkgs/development/ocaml-modules/ocaml-gettext/default.nix index 7525a10030e..fa8857f36b3 100644 --- a/pkgs/development/ocaml-modules/ocaml-gettext/default.nix +++ b/pkgs/development/ocaml-modules/ocaml-gettext/default.nix @@ -28,5 +28,6 @@ buildDunePackage rec { homepage = "https://github.com/gildor478/ocaml-gettext"; license = licenses.lgpl21; maintainers = [ maintainers.volth ]; + mainProgram = "ocaml-gettext"; }; } diff --git a/pkgs/development/ocaml-modules/ocaml-gettext/stub.nix b/pkgs/development/ocaml-modules/ocaml-gettext/stub.nix index 51e902b9140..950ac652e54 100644 --- a/pkgs/development/ocaml-modules/ocaml-gettext/stub.nix +++ b/pkgs/development/ocaml-modules/ocaml-gettext/stub.nix @@ -4,7 +4,7 @@ buildDunePackage rec { pname = "gettext-stub"; - inherit (ocaml_gettext) src version useDune2 meta; + inherit (ocaml_gettext) src version useDune2; buildInputs = [ dune-configurator ]; @@ -13,4 +13,6 @@ buildDunePackage rec { doCheck = true; checkInputs = [ ounit ]; + + meta = builtins.removeAttrs ocaml_gettext.meta [ "mainProgram" ]; } diff --git a/pkgs/development/ocaml-modules/ocaml-lsp/default.nix b/pkgs/development/ocaml-modules/ocaml-lsp/default.nix index c1831e660f4..f5b69a3b1e3 100644 --- a/pkgs/development/ocaml-modules/ocaml-lsp/default.nix +++ b/pkgs/development/ocaml-modules/ocaml-lsp/default.nix @@ -17,5 +17,6 @@ buildDunePackage rec { meta = lsp.meta // { description = "OCaml Language Server Protocol implementation"; + mainProgram = "ocamllsp"; }; } diff --git a/pkgs/development/ocaml-modules/ocp-ocamlres/default.nix b/pkgs/development/ocaml-modules/ocp-ocamlres/default.nix index d084e7f8a62..d5a70406e9c 100644 --- a/pkgs/development/ocaml-modules/ocp-ocamlres/default.nix +++ b/pkgs/development/ocaml-modules/ocp-ocamlres/default.nix @@ -26,9 +26,10 @@ stdenv.mkDerivation rec { meta = { description = "A simple tool and library to embed files and directories inside OCaml executables"; - license = lib.licenses.lgpl3Plus; homepage = "https://www.typerex.org/ocp-ocamlres.html"; + license = lib.licenses.lgpl3Plus; maintainers = [ lib.maintainers.vbgl ]; + mainProgram = "ocp-ocamlres"; inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/otfm/default.nix b/pkgs/development/ocaml-modules/otfm/default.nix index f6717458791..96ef1037cf6 100644 --- a/pkgs/development/ocaml-modules/otfm/default.nix +++ b/pkgs/development/ocaml-modules/otfm/default.nix @@ -34,8 +34,9 @@ stdenv.mkDerivation { of them. ''; homepage = webpage; - inherit (ocaml.meta) platforms; license = licenses.bsd3; maintainers = [ maintainers.jirkamarsik ]; + mainProgram = "otftrip"; + inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/otoml/default.nix b/pkgs/development/ocaml-modules/otoml/default.nix index c3f53fc611e..d69df70f772 100644 --- a/pkgs/development/ocaml-modules/otoml/default.nix +++ b/pkgs/development/ocaml-modules/otoml/default.nix @@ -1,4 +1,6 @@ -{ lib, fetchFromGitHub, buildDunePackage +{ lib +, fetchFromGitHub +, buildDunePackage , menhir , menhirLib , uutf @@ -6,7 +8,7 @@ buildDunePackage rec { pname = "otoml"; - version = "0.9.0"; + version = "1.0.1"; useDune2 = true; @@ -16,7 +18,7 @@ buildDunePackage rec { owner = "dmbaturin"; repo = pname; rev = version; - sha256 = "0l0c60rzgk11y8xq05kr8q9hkzb3c8vi995mq84x98ys73wb42j3"; + sha256 = "sha256-2WGuq4ZLbLvfG6WZ3iimiSMqMYHCuruZc1EttZ/5rBE="; }; strictDeps = true; diff --git a/pkgs/development/ocaml-modules/pgsolver/default.nix b/pkgs/development/ocaml-modules/pgsolver/default.nix index a1d6fe6486a..6653284ba48 100644 --- a/pkgs/development/ocaml-modules/pgsolver/default.nix +++ b/pkgs/development/ocaml-modules/pgsolver/default.nix @@ -15,9 +15,10 @@ buildOasisPackage rec { propagatedBuildInputs = [ tcslib ocaml-sat-solvers ]; meta = { - homepage = "https://github.com/tcsprojects/pgsolver"; description = "A collection of tools for generating, manipulating and - most of all - solving parity games"; + homepage = "https://github.com/tcsprojects/pgsolver"; license = lib.licenses.bsd3; maintainers = with lib.maintainers; [ mgttlinger ]; + mainProgram = "pgsolver-bin"; }; } diff --git a/pkgs/development/ocaml-modules/phylogenetics/default.nix b/pkgs/development/ocaml-modules/phylogenetics/default.nix index 366ad9cc24a..11da66bd760 100644 --- a/pkgs/development/ocaml-modules/phylogenetics/default.nix +++ b/pkgs/development/ocaml-modules/phylogenetics/default.nix @@ -46,9 +46,10 @@ buildDunePackage rec { doCheck = true; meta = with lib; { - homepage = "https://github.com/biocaml/phylogenetics"; description = "Algorithms and datastructures for phylogenetics"; - maintainers = [ maintainers.bcdarwin ]; + homepage = "https://github.com/biocaml/phylogenetics"; license = licenses.cecill-b; + maintainers = [ maintainers.bcdarwin ]; + mainProgram = "phylosim"; }; } diff --git a/pkgs/development/ocaml-modules/rebez/default.nix b/pkgs/development/ocaml-modules/rebez/default.nix index b82c2ba7482..743f94454ee 100644 --- a/pkgs/development/ocaml-modules/rebez/default.nix +++ b/pkgs/development/ocaml-modules/rebez/default.nix @@ -16,7 +16,8 @@ buildDunePackage rec { meta = with lib; { description = "Cubic bezier implementation in Reason / OCaml"; homepage = "https://github.com/jchavarri/rebez/"; - maintainers = with maintainers; [ superherointj ]; license = licenses.mit; + maintainers = with maintainers; [ superherointj ]; + mainProgram = "RebezApp.exe"; }; } diff --git a/pkgs/development/ocaml-modules/stdcompat/default.nix b/pkgs/development/ocaml-modules/stdcompat/default.nix index eae9b264ba1..3630be368e5 100644 --- a/pkgs/development/ocaml-modules/stdcompat/default.nix +++ b/pkgs/development/ocaml-modules/stdcompat/default.nix @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { # build fails otherwise enableParallelBuilding = false; - configureFlags = "--libdir=$(OCAMLFIND_DESTDIR)"; + configureFlags = [ "--libdir=$(OCAMLFIND_DESTDIR)" ]; meta = { homepage = "https://github.com/thierry-martinez/stdcompat"; diff --git a/pkgs/development/ocaml-modules/tuntap/default.nix b/pkgs/development/ocaml-modules/tuntap/default.nix index 981f05b01e3..2bbf89c6127 100644 --- a/pkgs/development/ocaml-modules/tuntap/default.nix +++ b/pkgs/development/ocaml-modules/tuntap/default.nix @@ -23,7 +23,8 @@ buildDunePackage rec { meta = { description = "Bindings to the UNIX tuntap facility"; - license = lib.licenses.isc; homepage = "https://github.com/mirage/ocaml-tuntap"; + license = lib.licenses.isc; + mainProgram = "otunctl"; }; } diff --git a/pkgs/development/ocaml-modules/twt/default.nix b/pkgs/development/ocaml-modules/twt/default.nix index 4e76f0c16d3..46822df31fc 100644 --- a/pkgs/development/ocaml-modules/twt/default.nix +++ b/pkgs/development/ocaml-modules/twt/default.nix @@ -27,10 +27,11 @@ stdenv.mkDerivation rec { dontStrip = true; meta = with lib; { - homepage = "http://people.csail.mit.edu/mikelin/ocaml+twt/"; description = "“The Whitespace Thing” for OCaml"; + homepage = "http://people.csail.mit.edu/mikelin/ocaml+twt/"; license = licenses.mit; maintainers = [ maintainers.vbgl ]; - platforms = ocaml.meta.platforms or [ ]; + mainProgram = "ocaml+twt"; + inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/uuuu/default.nix b/pkgs/development/ocaml-modules/uuuu/default.nix index d2895ce68e6..59dd7d56896 100644 --- a/pkgs/development/ocaml-modules/uuuu/default.nix +++ b/pkgs/development/ocaml-modules/uuuu/default.nix @@ -32,8 +32,9 @@ buildDunePackage rec { meta = { description = "A library to normalize an ISO-8859 input to Unicode code-point"; - license = lib.licenses.mit; homepage = "https://github.com/mirage/uuuu"; - maintainers = with lib.maintainers; [ ]; + license = lib.licenses.mit; + maintainers = [ ]; + mainProgram = "uuuu.generate"; }; } diff --git a/pkgs/development/ocaml-modules/vg/default.nix b/pkgs/development/ocaml-modules/vg/default.nix index 35a0e51cb09..94ebc1b8d81 100644 --- a/pkgs/development/ocaml-modules/vg/default.nix +++ b/pkgs/development/ocaml-modules/vg/default.nix @@ -57,8 +57,9 @@ stdenv.mkDerivation { module. An API allows to implement new renderers. ''; homepage = webpage; - inherit (ocaml.meta) platforms; license = licenses.isc; maintainers = [ maintainers.jirkamarsik ]; + mainProgram = "vecho"; + inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/wayland/default.nix b/pkgs/development/ocaml-modules/wayland/default.nix index 7dfb46ce63c..12c385eac72 100644 --- a/pkgs/development/ocaml-modules/wayland/default.nix +++ b/pkgs/development/ocaml-modules/wayland/default.nix @@ -42,8 +42,9 @@ buildDunePackage rec { meta = { description = "Pure OCaml Wayland protocol library"; + homepage = "https://github.com/talex5/ocaml-wayland"; license = lib.licenses.asl20; maintainers = [ lib.maintainers.sternenseemann ]; - homepage = "https://github.com/talex5/ocaml-wayland"; + mainProgram = "wayland-scanner-ocaml"; }; } diff --git a/pkgs/development/ocaml-modules/webbrowser/default.nix b/pkgs/development/ocaml-modules/webbrowser/default.nix index a8adced9388..7ace251e553 100644 --- a/pkgs/development/ocaml-modules/webbrowser/default.nix +++ b/pkgs/development/ocaml-modules/webbrowser/default.nix @@ -23,6 +23,7 @@ stdenv.mkDerivation rec { homepage = "https://erratique.ch/software/webbrowser"; license = lib.licenses.isc; maintainers = [ lib.maintainers.vbgl ]; + mainProgram = "browse"; inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/ocaml-modules/wodan/unix.nix b/pkgs/development/ocaml-modules/wodan/unix.nix index 64a18b6b83d..9b9cd841e0f 100644 --- a/pkgs/development/ocaml-modules/wodan/unix.nix +++ b/pkgs/development/ocaml-modules/wodan/unix.nix @@ -22,6 +22,9 @@ buildDunePackage rec { moveToOutput bin "''${!outputBin}" ''; - meta = wodan.meta // { description = "Wodan clients with Unix integration"; }; + meta = wodan.meta // { + description = "Wodan clients with Unix integration"; + mainProgram = "wodanc"; + }; } diff --git a/pkgs/development/ocaml-modules/x509/default.nix b/pkgs/development/ocaml-modules/x509/default.nix index 116772e7819..845581aa7cc 100644 --- a/pkgs/development/ocaml-modules/x509/default.nix +++ b/pkgs/development/ocaml-modules/x509/default.nix @@ -5,19 +5,17 @@ }: buildDunePackage rec { - minimumOCamlVersion = "4.07"; + minimalOCamlVersion = "4.08"; pname = "x509"; - version = "0.15.2"; + version = "0.16.0"; src = fetchurl { - url = "https://github.com/mirleft/ocaml-x509/releases/download/v${version}/x509-v${version}.tbz"; - sha256 = "4034afdd83a0cb8291b1f809403015da9139bd772813d59d6093e42ec31ba643"; + url = "https://github.com/mirleft/ocaml-x509/releases/download/v${version}/x509-${version}.tbz"; + sha256 = "sha256:159mhfwsiv08sj0zk7s3k813f0mc9vpziwpf6j9r32y3nizp59k7"; }; - useDune2 = true; - - buildInputs = [ alcotest cstruct-unix ]; + checkInputs = [ alcotest cstruct-unix ]; propagatedBuildInputs = [ asn1-combinators domain-name fmt gmap mirage-crypto mirage-crypto-pk mirage-crypto-ec pbkdf logs base64 ipaddr ]; doCheck = true; diff --git a/pkgs/development/php-packages/memcached/default.nix b/pkgs/development/php-packages/memcached/default.nix index 5e56882c9d2..9724904d52b 100644 --- a/pkgs/development/php-packages/memcached/default.nix +++ b/pkgs/development/php-packages/memcached/default.nix @@ -13,8 +13,6 @@ buildPecl rec { internalDeps = [ php.extensions.session - ] ++ lib.optionals (lib.versionOlder php.version "7.4") [ - php.extensions.hash ]; configureFlags = [ diff --git a/pkgs/development/php-packages/openswoole/default.nix b/pkgs/development/php-packages/openswoole/default.nix index 49379dfd541..d43ed40f8ce 100644 --- a/pkgs/development/php-packages/openswoole/default.nix +++ b/pkgs/development/php-packages/openswoole/default.nix @@ -9,7 +9,6 @@ buildPecl { sha256 = "sha256-Rhoa4ny86dwB3e86/1W30AlDGRUDYjK8RusquKF5Izg="; buildInputs = [ pcre2 ] ++ lib.optionals (!stdenv.isDarwin) [ valgrind ]; - internalDeps = lib.optionals (lib.versionOlder php.version "7.4") [ php.extensions.hash ]; meta = with lib; { changelog = "https://pecl.php.net/package/openswoole/${version}"; diff --git a/pkgs/development/php-packages/redis/default.nix b/pkgs/development/php-packages/redis/default.nix index 070112ba655..e4b16dd991a 100644 --- a/pkgs/development/php-packages/redis/default.nix +++ b/pkgs/development/php-packages/redis/default.nix @@ -10,8 +10,6 @@ buildPecl { session ] ++ lib.optionals (lib.versionOlder php.version "8.0") [ json - ] ++ lib.optionals (lib.versionOlder php.version "7.4") [ - hash ]; meta = with lib; { diff --git a/pkgs/development/php-packages/snuffleupagus/default.nix b/pkgs/development/php-packages/snuffleupagus/default.nix index 4318a49a8aa..7a1c401b93a 100644 --- a/pkgs/development/php-packages/snuffleupagus/default.nix +++ b/pkgs/development/php-packages/snuffleupagus/default.nix @@ -22,8 +22,6 @@ buildPecl rec { internalDeps = with php.extensions; [ session - ] ++ lib.optionals (lib.versionOlder php.version "7.4") [ - hash ]; patches = [ diff --git a/pkgs/development/php-packages/swoole/default.nix b/pkgs/development/php-packages/swoole/default.nix index 201b78e4966..fb69c18710a 100644 --- a/pkgs/development/php-packages/swoole/default.nix +++ b/pkgs/development/php-packages/swoole/default.nix @@ -7,7 +7,6 @@ buildPecl { sha256 = "sha256-SnhDRC7/a7BTHn87c6YCz/R8jI6aES1ibSD6YAl6R+I="; buildInputs = [ pcre2 ] ++ lib.optionals (!stdenv.isDarwin) [ valgrind ]; - internalDeps = lib.optionals (lib.versionOlder php.version "7.4") [ php.extensions.hash ]; doCheck = true; checkTarget = "tests"; diff --git a/pkgs/development/python-modules/Babel/default.nix b/pkgs/development/python-modules/Babel/default.nix deleted file mode 100644 index 3143a800768..00000000000 --- a/pkgs/development/python-modules/Babel/default.nix +++ /dev/null @@ -1,24 +0,0 @@ -{ stdenv, lib, buildPythonPackage, fetchPypi, pytz, pytestCheckHook, freezegun }: - -buildPythonPackage rec { - pname = "Babel"; - version = "2.9.1"; - - src = fetchPypi { - inherit pname version; - sha256 = "bc0c176f9f6a994582230df350aa6e05ba2ebe4b3ac317eab29d9be5d2768da0"; - }; - - propagatedBuildInputs = [ pytz ]; - - checkInputs = [ pytestCheckHook freezegun ]; - - doCheck = !stdenv.isDarwin; - - meta = with lib; { - homepage = "http://babel.edgewall.org"; - description = "A collection of tools for internationalizing Python applications"; - license = licenses.bsd3; - maintainers = with maintainers; [ ]; - }; -} diff --git a/pkgs/development/python-modules/Mako/default.nix b/pkgs/development/python-modules/Mako/default.nix index d7b350b9f96..5eca80d98a5 100644 --- a/pkgs/development/python-modules/Mako/default.nix +++ b/pkgs/development/python-modules/Mako/default.nix @@ -8,7 +8,7 @@ , markupsafe # extras: Babel -, Babel +, babel # tests , mock @@ -32,7 +32,7 @@ buildPythonPackage rec { passthru.extras-require = { babel = [ - Babel + babel ]; }; diff --git a/pkgs/development/python-modules/Nikola/default.nix b/pkgs/development/python-modules/Nikola/default.nix index c95283acda5..b15f07bfcae 100644 --- a/pkgs/development/python-modules/Nikola/default.nix +++ b/pkgs/development/python-modules/Nikola/default.nix @@ -1,6 +1,6 @@ { lib , aiohttp -, Babel +, babel , blinker , buildPythonPackage , python-dateutil @@ -51,7 +51,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ aiohttp - Babel + babel blinker python-dateutil docutils diff --git a/pkgs/development/python-modules/Pygments/default.nix b/pkgs/development/python-modules/Pygments/default.nix deleted file mode 100644 index af125e1f40e..00000000000 --- a/pkgs/development/python-modules/Pygments/default.nix +++ /dev/null @@ -1,28 +0,0 @@ -{ lib -, buildPythonPackage -, fetchPypi -, docutils -}: - -buildPythonPackage rec { - pname = "Pygments"; - version = "2.11.2"; - - src = fetchPypi { - inherit pname version; - sha256 = "4e426f72023d88d03b2fa258de560726ce890ff3b630f88c21cbb8b2503b8c6a"; - }; - - propagatedBuildInputs = [ docutils ]; - - # Circular dependency with sphinx - doCheck = false; - pythonImportsCheck = [ "pygments" ]; - - meta = { - homepage = "https://pygments.org/"; - description = "A generic syntax highlighter"; - license = lib.licenses.bsd2; - maintainers = with lib.maintainers; [ ]; - }; -} diff --git a/pkgs/development/python-modules/agate/default.nix b/pkgs/development/python-modules/agate/default.nix index 04266bc3d88..29f58063648 100644 --- a/pkgs/development/python-modules/agate/default.nix +++ b/pkgs/development/python-modules/agate/default.nix @@ -1,5 +1,5 @@ { lib -, Babel +, babel , buildPythonPackage , cssselect , fetchFromGitHub @@ -32,7 +32,7 @@ buildPythonPackage rec { }; propagatedBuildInputs = [ - Babel + babel isodate leather parsedatetime diff --git a/pkgs/development/python-modules/ailment/default.nix b/pkgs/development/python-modules/ailment/default.nix index 498caa2045d..2a66a332c39 100644 --- a/pkgs/development/python-modules/ailment/default.nix +++ b/pkgs/development/python-modules/ailment/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "ailment"; - version = "9.2.3"; + version = "9.2.4"; format = "pyproject"; disabled = pythonOlder "3.6"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "v${version}"; - hash = "sha256-R8AaQj/Rdz8SSN2L8v8ZzIxnPQqdg/SKUB6FV9uYFLs="; + hash = "sha256-YsH9QAKoM4WILabgLvEZMJXPfpkfn/h4tofNIcGJY+k="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/aiobotocore/default.nix b/pkgs/development/python-modules/aiobotocore/default.nix index df800eb4755..199495494ab 100644 --- a/pkgs/development/python-modules/aiobotocore/default.nix +++ b/pkgs/development/python-modules/aiobotocore/default.nix @@ -10,12 +10,12 @@ buildPythonPackage rec { pname = "aiobotocore"; - version = "2.2.0"; + version = "2.3.0"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-cTV5OcMCJnDXu5SDMZQUekTr/OJLFkPk5E/twe5zSbo="; + sha256 = "sha256-/D09YGFBC8GU0J7FReMLRGnV90dw+TespfaqReYqG/4="; }; # relax version constraints: aiobotocore works with newer botocore versions diff --git a/pkgs/development/python-modules/aioesphomeapi/default.nix b/pkgs/development/python-modules/aioesphomeapi/default.nix index 06389d50677..9d6d3f2d56d 100644 --- a/pkgs/development/python-modules/aioesphomeapi/default.nix +++ b/pkgs/development/python-modules/aioesphomeapi/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "aioesphomeapi"; - version = "10.8.2"; + version = "10.10.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "esphome"; repo = pname; rev = "v${version}"; - sha256 = "sha256-zvilMBx9H2VDmu13IiAiCqXEGkbpAJpGnt4Ea7FlGVI="; + sha256 = "sha256-j1YYzyOLuH+COBDXJUpkUx8H2K8F5tC5LB8ysZKi6oI="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/angr/default.nix b/pkgs/development/python-modules/angr/default.nix index f8e3ac530f1..bbfdcb43732 100644 --- a/pkgs/development/python-modules/angr/default.nix +++ b/pkgs/development/python-modules/angr/default.nix @@ -46,7 +46,7 @@ in buildPythonPackage rec { pname = "angr"; - version = "9.2.3"; + version = "9.2.4"; format = "pyproject"; disabled = pythonOlder "3.6"; @@ -55,7 +55,7 @@ buildPythonPackage rec { owner = pname; repo = pname; rev = "v${version}"; - hash = "sha256-RcAiPzz2JUlNIGU7+6WCd5JskRYmlMee8wOcOclfb0Q="; + hash = "sha256-3iw1tk2r6Ee302AMjgsRi6EL5py+4Blf47EWrWyiqNk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/angrop/default.nix b/pkgs/development/python-modules/angrop/default.nix index d46c18f6d17..8c40a51ff43 100644 --- a/pkgs/development/python-modules/angrop/default.nix +++ b/pkgs/development/python-modules/angrop/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "angrop"; - version = "9.2.3"; + version = "9.2.4"; format = "pyproject"; disabled = pythonOlder "3.6"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "v${version}"; - hash = "sha256-bhdn3uomvegpvynR0ts4KdwFapX2xGfuwp4e57Xtcoo="; + hash = "sha256-EMW2RxImYoPSnkBG027g5o5K3WT40F/Dj+GzqS8/K6g="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/ansible-compat/default.nix b/pkgs/development/python-modules/ansible-compat/default.nix index 88ce74ad4cd..5440359af72 100644 --- a/pkgs/development/python-modules/ansible-compat/default.nix +++ b/pkgs/development/python-modules/ansible-compat/default.nix @@ -12,12 +12,12 @@ buildPythonPackage rec { pname = "ansible-compat"; - version = "2.0.3"; + version = "2.0.4"; format = "pyproject"; src = fetchPypi { inherit pname version; - sha256 = "sha256-oRV+QFneQYefP2XV7WK/ND/lvUUoYQHi0pcf/lfjqKU="; + sha256 = "sha256-PV+yHB/waehKxfwX9sjSJhwqeymZhr6BDTOd/HfBKKk="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/ansible-later/default.nix b/pkgs/development/python-modules/ansible-later/default.nix index 8ad96e78bcf..c35cfcb6e45 100644 --- a/pkgs/development/python-modules/ansible-later/default.nix +++ b/pkgs/development/python-modules/ansible-later/default.nix @@ -21,7 +21,7 @@ buildPythonPackage rec { pname = "ansible-later"; - version = "2.0.12"; + version = "2.0.13"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -30,7 +30,7 @@ buildPythonPackage rec { owner = "thegeeklab"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-0N/BER7tV8Hv1pvHaf/46BKnzZfHBGuEaPPex/CDQe0="; + hash = "sha256-9xVFvXCHjgF+7asO1ialGIofJwsRRRiydo/Ui2C+Wig="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/ansible/core.nix b/pkgs/development/python-modules/ansible/core.nix index 49ae39feba7..e1e198ce179 100644 --- a/pkgs/development/python-modules/ansible/core.nix +++ b/pkgs/development/python-modules/ansible/core.nix @@ -24,11 +24,11 @@ buildPythonPackage rec { pname = "ansible-core"; - version = "2.12.5"; + version = "2.13.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-HMyZRPEBMxra0e1A1axmqBSRMwUq402wJnp0qnO+67M="; + sha256 = "sha256-COD7SnGNlnplTnDNpXz5MgGGkyndHPW4pCZ8V8XEyNM="; }; # ansible_connection is already wrapped, so don't pass it through diff --git a/pkgs/development/python-modules/ansible/default.nix b/pkgs/development/python-modules/ansible/default.nix index 2e44fa4e243..6ca283a6e40 100644 --- a/pkgs/development/python-modules/ansible/default.nix +++ b/pkgs/development/python-modules/ansible/default.nix @@ -20,7 +20,7 @@ let pname = "ansible"; - version = "5.7.1"; + version = "5.8.0"; in buildPythonPackage { inherit pname version; @@ -30,7 +30,7 @@ buildPythonPackage { src = fetchPypi { inherit pname version; - sha256 = "sha256-kKCaNFENGU1jVWiVoiWonkqLdIua4hW1XlF6N94GOmE="; + sha256 = "sha256-+gVkdiAfQGJfs22VxQQe9GOIC+GL5cc7mYtXtAGWeGM="; }; postPatch = '' diff --git a/pkgs/development/python-modules/apache-airflow/default.nix b/pkgs/development/python-modules/apache-airflow/default.nix index 948fae7893b..c753458fb7e 100644 --- a/pkgs/development/python-modules/apache-airflow/default.nix +++ b/pkgs/development/python-modules/apache-airflow/default.nix @@ -243,5 +243,7 @@ buildPythonPackage rec { homepage = "https://airflow.apache.org/"; license = licenses.asl20; maintainers = with maintainers; [ bhipple costrouc ingenieroariel ]; + # requires extremely outdated versions of multiple dependencies + broken = true; }; } diff --git a/pkgs/development/python-modules/apispec/default.nix b/pkgs/development/python-modules/apispec/default.nix index 0c145848810..9ad41715a23 100644 --- a/pkgs/development/python-modules/apispec/default.nix +++ b/pkgs/development/python-modules/apispec/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "apispec"; - version = "5.2.1"; + version = "5.2.2"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-z3VMQ5pW3xLwFJ/FaQpCJ3TprDOV+2eYiCwX+8OinS0="; + hash = "sha256-bqZULh6//p/ZW6Ae8/UTUerGwgCpdFYsdHMFm5zSCqc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/apprise/default.nix b/pkgs/development/python-modules/apprise/default.nix index 5bccffea292..cf532aedd24 100644 --- a/pkgs/development/python-modules/apprise/default.nix +++ b/pkgs/development/python-modules/apprise/default.nix @@ -1,5 +1,5 @@ { lib -, Babel +, babel , buildPythonPackage , click , cryptography @@ -31,7 +31,7 @@ buildPythonPackage rec { }; nativeBuildInputs = [ - Babel + babel installShellFiles ]; diff --git a/pkgs/development/python-modules/archinfo/default.nix b/pkgs/development/python-modules/archinfo/default.nix index 59a2f9ad9c9..da139209577 100644 --- a/pkgs/development/python-modules/archinfo/default.nix +++ b/pkgs/development/python-modules/archinfo/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "archinfo"; - version = "9.2.3"; + version = "9.2.4"; format = "pyproject"; disabled = pythonOlder "3.6"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "v${version}"; - hash = "sha256-r0cZXyj47HmgFVyQ3POGexeQxBiQ1xx/ptsPMwCRjHY="; + hash = "sha256-d5SP9pnDWXEzjBXKeqnuKK6+lrFRWYwmiV4MjfqORwk="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/audible/default.nix b/pkgs/development/python-modules/audible/default.nix new file mode 100644 index 00000000000..987859fbcdd --- /dev/null +++ b/pkgs/development/python-modules/audible/default.nix @@ -0,0 +1,29 @@ +{ lib, fetchFromGitHub, buildPythonPackage, beautifulsoup4, httpx, pbkdf2, pillow, pyaes, rsa }: + +buildPythonPackage rec { + pname = "audible"; + version = "0.8.1"; + + src = fetchFromGitHub { + owner = "mkb79"; + repo = "Audible"; + rev = "v${version}"; + sha256 = "0fsb5av4s7fvpn0iryl8jj3lwffwlxgbwj46l3fidy0l58nq3b1d"; + }; + + propagatedBuildInputs = [ beautifulsoup4 httpx pbkdf2 pillow pyaes rsa ]; + + postPatch = '' + substituteInPlace setup.py \ + --replace 'httpx>=0.20.*,<=0.22.*' 'httpx' + ''; + + pythonImportsCheck = [ "audible"]; + + meta = with lib; { + description = "A(Sync) Interface for internal Audible API written in pure Python"; + license = licenses.agpl3; + homepage = "https://github.com/mkb79/Audible"; + maintainers = with maintainers; [ jvanbruegge ]; + }; +} diff --git a/pkgs/development/python-modules/azure-core/default.nix b/pkgs/development/python-modules/azure-core/default.nix index 260a40e9de8..bae168e26dd 100644 --- a/pkgs/development/python-modules/azure-core/default.nix +++ b/pkgs/development/python-modules/azure-core/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, buildPythonPackage, fetchPypi, isPy27 +{ lib, stdenv, buildPythonPackage, fetchpatch, fetchPypi, pythonOlder , aiodns , aiohttp , flask @@ -15,16 +15,26 @@ }: buildPythonPackage rec { - version = "1.23.1"; + version = "1.24.0"; pname = "azure-core"; - disabled = isPy27; + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "sha256-KKAd+68KaBLE4qgtFkLqMJVqlznyW8d8myO5H06mjw8="; + sha256 = "sha256-NFsbBB+q19AgWyDVaX8dDfNEMC56qoUBkFWA/4e9C+U="; }; + patches = [ + # FIXME: fixes tests with new versions of flask/werkzeug + # upstream PR: https://github.com/Azure/azure-sdk-for-python/pull/24450 + (fetchpatch { + url = "https://github.com/Azure/azure-sdk-for-python/commit/fb20b0b985f614bb7bcd84f3f5f6f3105de25fd9.patch"; + stripLen = 3; + sha256 = "sha256-Gt5T/UkQT1yml8bqYbeUpimfOPlmzpN1KKKUnbU9xJw="; + }) + ]; + propagatedBuildInputs = [ requests six diff --git a/pkgs/development/python-modules/azure-mgmt-compute/default.nix b/pkgs/development/python-modules/azure-mgmt-compute/default.nix index 3dbb8f5a87a..10d9e8a9f5f 100644 --- a/pkgs/development/python-modules/azure-mgmt-compute/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-compute/default.nix @@ -6,13 +6,13 @@ }: buildPythonPackage rec { - version = "26.1.0"; + version = "27.0.0"; pname = "azure-mgmt-compute"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "sha256-K63nT8sx2PCIFhc+1eCAs/ItESbv9xA+8GDn2hZCJHU="; + sha256 = "sha256-n+MQJ0ZeQ/hyS2G8CrNCtoxbvcfrIXmn4LXB/V6JXT0="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-containerservice/default.nix b/pkgs/development/python-modules/azure-mgmt-containerservice/default.nix index 4a502ac65db..df03e41d56b 100644 --- a/pkgs/development/python-modules/azure-mgmt-containerservice/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-containerservice/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "azure-mgmt-containerservice"; - version = "19.0.0"; + version = "19.1.0"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -19,7 +19,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "sha256-UHkSUoNzXWomr4vczGRRXVJplVRfqDjwFczkOP2Jwsc="; + sha256 = "sha256-t06Cesxvjk31aDxkX2Yj0VzFubWbiAc26LzNTIgVEqs="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-datafactory/default.nix b/pkgs/development/python-modules/azure-mgmt-datafactory/default.nix index d26033c414f..fc638390a3b 100644 --- a/pkgs/development/python-modules/azure-mgmt-datafactory/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-datafactory/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "azure-mgmt-datafactory"; - version = "2.4.0"; + version = "2.5.0"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -18,7 +18,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; extension = "zip"; - hash = "sha256-oCDh7tWsBA6z/auQm3AtkRzT9IUrq8HJ+R//HDJ+1nw="; + hash = "sha256-vV+VAK+lesBylrIsGB+MZCT4kW84beFSIYJZfOzPoTY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-recoveryservicesbackup/default.nix b/pkgs/development/python-modules/azure-mgmt-recoveryservicesbackup/default.nix index f2426586d6a..d5fe92f320b 100644 --- a/pkgs/development/python-modules/azure-mgmt-recoveryservicesbackup/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-recoveryservicesbackup/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "azure-mgmt-recoveryservicesbackup"; - version = "4.2.0"; + version = "5.0.0"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -18,7 +18,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; extension = "zip"; - hash = "sha256-At0BP9mWJneG65FDZuQXTnikaNcEWe+GtTr9ZPri89M="; + hash = "sha256-BciA3sFyja5xo9yS3WVglC73y8gTfw8UejdEzbD4HYE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/azure-mgmt-servicelinker/default.nix b/pkgs/development/python-modules/azure-mgmt-servicelinker/default.nix index 55f4d928492..f574b32286c 100644 --- a/pkgs/development/python-modules/azure-mgmt-servicelinker/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-servicelinker/default.nix @@ -8,11 +8,11 @@ buildPythonPackage rec { pname = "azure-mgmt-servicelinker"; - version = "1.0.0"; + version = "1.1.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-lAjgwEa2TJDEUU8pwfwkU8EyA1bhLkcAv++I6WHb7Xs="; + sha256 = "sha256-QVw6Y9HachwBRwCbF0cSGLCAkSJtNnXBvsj5YX1TmJU="; extension = "zip"; }; diff --git a/pkgs/development/python-modules/azure-multiapi-storage/default.nix b/pkgs/development/python-modules/azure-multiapi-storage/default.nix index 9bafac41ef3..84114684476 100644 --- a/pkgs/development/python-modules/azure-multiapi-storage/default.nix +++ b/pkgs/development/python-modules/azure-multiapi-storage/default.nix @@ -7,13 +7,13 @@ }: buildPythonPackage rec { - version = "0.8.0"; + version = "0.9.0"; pname = "azure-multiapi-storage"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "sha256-ZRiqnxPRdSOqyRMwuvxqKiZcxMbhVEYJ09CIlepc/B4="; + sha256 = "sha256-7uq8uRZ3MXI1Gy+DmMkRVNV7uZPw6j8r9KfhS8d+tCY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/babel/default.nix b/pkgs/development/python-modules/babel/default.nix new file mode 100644 index 00000000000..14633062f36 --- /dev/null +++ b/pkgs/development/python-modules/babel/default.nix @@ -0,0 +1,25 @@ +{ stdenv, lib, buildPythonPackage, fetchPypi, pytz, pytestCheckHook, freezegun }: + +buildPythonPackage rec { + pname = "babel"; + version = "2.10.1"; + + src = fetchPypi { + pname = "Babel"; + inherit version; + sha256 = "sha256-mK6soIYTPvs+HiqtA5aYdJDIQlkp3bz+BVAYT9xUzRM="; + }; + + propagatedBuildInputs = [ pytz ]; + + checkInputs = [ pytestCheckHook freezegun ]; + + doCheck = !stdenv.isDarwin; + + meta = with lib; { + homepage = "https://babel.pocoo.org/"; + description = "Collection of internationalizing tools"; + license = licenses.bsd3; + maintainers = with maintainers; [ SuperSandro2000 ]; + }; +} diff --git a/pkgs/development/python-modules/babelgladeextractor/default.nix b/pkgs/development/python-modules/babelgladeextractor/default.nix index b1516d1abdb..bd6baccbde4 100644 --- a/pkgs/development/python-modules/babelgladeextractor/default.nix +++ b/pkgs/development/python-modules/babelgladeextractor/default.nix @@ -2,7 +2,7 @@ , isPy3k , buildPythonPackage , fetchPypi -, Babel +, babel }: buildPythonPackage rec { @@ -18,7 +18,7 @@ buildPythonPackage rec { }; propagatedBuildInputs = [ - Babel + babel ]; # SyntaxError: Non-ASCII character '\xc3' in file /build/BabelGladeExtractor-0.6.3/babelglade/tests/test_translate.py on line 20, but no encoding declared; see http://python.org/dev/peps/pep-0263/ for details diff --git a/pkgs/development/python-modules/bc-python-hcl2/default.nix b/pkgs/development/python-modules/bc-python-hcl2/default.nix index 8d5c2d7d4c2..56773e372b4 100644 --- a/pkgs/development/python-modules/bc-python-hcl2/default.nix +++ b/pkgs/development/python-modules/bc-python-hcl2/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "bc-python-hcl2"; - version = "0.3.39"; + version = "0.3.40"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-JMQ2sLgAnMJ1/0nR8LgKbpPB43gVKtCtrZKr/T4p0O8="; + hash = "sha256-4we2Txk7kJ1SrCa82eQJ9OsqyTkFzocNi+GG7cV+OAc="; }; # Nose is required during build process, so can not use `checkInputs`. diff --git a/pkgs/development/python-modules/bitarray/default.nix b/pkgs/development/python-modules/bitarray/default.nix index d5806d77112..7ee76f2f2fe 100644 --- a/pkgs/development/python-modules/bitarray/default.nix +++ b/pkgs/development/python-modules/bitarray/default.nix @@ -2,15 +2,19 @@ , buildPythonPackage , fetchPypi , python +, pythonOlder }: buildPythonPackage rec { pname = "bitarray"; - version = "2.4.1"; + version = "2.5.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-+uygP5eemSzHb3QGr365eVyxEbjYlpyJGgMr10l8h9o="; + hash = "sha256-jTj2B1EAgJmmWdWs+zXvQVAYPv/Vsr+mwQGZJw3fTJw="; }; checkPhase = '' @@ -18,13 +22,15 @@ buildPythonPackage rec { ${python.interpreter} -c 'import bitarray; bitarray.test()' ''; - pythonImportsCheck = [ "bitarray" ]; + pythonImportsCheck = [ + "bitarray" + ]; meta = with lib; { description = "Efficient arrays of booleans"; homepage = "https://github.com/ilanschnell/bitarray"; - changelog = "https://github.com/ilanschnell/bitarray/blob/master/CHANGE_LOG"; + changelog = "https://github.com/ilanschnell/bitarray/raw/${version}/CHANGE_LOG"; license = licenses.psfl; - maintainers = [ maintainers.bhipple ]; + maintainers = with maintainers; [ bhipple ]; }; } diff --git a/pkgs/development/python-modules/blocksat-cli/default.nix b/pkgs/development/python-modules/blocksat-cli/default.nix index 4c5b96bce53..8652dbdc544 100644 --- a/pkgs/development/python-modules/blocksat-cli/default.nix +++ b/pkgs/development/python-modules/blocksat-cli/default.nix @@ -13,11 +13,11 @@ buildPythonPackage rec { pname = "blocksat-cli"; - version = "0.4.2"; + version = "0.4.3"; src = fetchPypi { inherit pname version; - sha256 = "sha256-hz5BGE+gqOrPiXvmeOTOecm2RUrTvM/xxvV3cnO2QSc="; + sha256 = "sha256-HHalq64pgjobnPwjXMi57OumHxOuf7wjuw0d6arMoAI="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/bond-api/default.nix b/pkgs/development/python-modules/bond-api/default.nix index 555caa6033c..1a07de6dcce 100644 --- a/pkgs/development/python-modules/bond-api/default.nix +++ b/pkgs/development/python-modules/bond-api/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "bond-api"; - version = "0.1.17"; + version = "0.1.18"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "prystupa"; repo = "bond-api"; rev = "v${version}"; - hash = "sha256-fuVYyDy3fG+XobFe2GCzMWRWPk8VDPLU4RHJzcF5MLg="; + hash = "sha256-+87/j94eHyW3EMMBK+aXaNTVoNxsixeLusyBsPWa9yM="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/browser-cookie3/default.nix b/pkgs/development/python-modules/browser-cookie3/default.nix index 163c0e4a15a..a452c310e43 100644 --- a/pkgs/development/python-modules/browser-cookie3/default.nix +++ b/pkgs/development/python-modules/browser-cookie3/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "browser-cookie3"; - version = "0.14.0"; + version = "0.14.1"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-kWYMl/JZxonLfT0u/13bXz0MlC36jssWWq/i05FDpOA="; + hash = "sha256-2cMWFyHK+7M99Z9O7PiKue37c5XVBe/n88AF5ax7A2s="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/bugsnag/default.nix b/pkgs/development/python-modules/bugsnag/default.nix index ace2e2166d7..fa2880fb055 100644 --- a/pkgs/development/python-modules/bugsnag/default.nix +++ b/pkgs/development/python-modules/bugsnag/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "bugsnag"; - version = "4.2.0"; + version = "4.2.1"; format = "setuptools"; disabled = pythonOlder "3.5"; src = fetchPypi { inherit pname version; - hash = "sha256-NnTn4m9we40Ww2abP7mbz1CtdypZyN2GYBvj8zxhOpI="; + hash = "sha256-PT6XaKz3QFAEhCmS7jXKK7xxscNlpbhGpCKQIRuSt6U="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/buildbot/default.nix b/pkgs/development/python-modules/buildbot/default.nix index 2eff37314e8..61117721227 100644 --- a/pkgs/development/python-modules/buildbot/default.nix +++ b/pkgs/development/python-modules/buildbot/default.nix @@ -1,8 +1,9 @@ { stdenv, lib, buildPythonPackage, fetchPypi, makeWrapper, isPy3k -, python, twisted, jinja2, zope_interface, sqlalchemy, alembic, python-dateutil -, txaio, autobahn, pyjwt, pyyaml, unidiff, treq, txrequests, pypugjs, boto3 -, moto, mock, lz4, setuptoolsTrial, isort, pylint, flake8, buildbot-worker -, buildbot-pkg, buildbot-plugins, parameterized, git, openssh, glibcLocales +, python, twisted, jinja2, msgpack, zope_interface, sqlalchemy, alembic +, python-dateutil, txaio, autobahn, pyjwt, pyyaml, treq, txrequests, pypugjs +, boto3, moto, mock, lz4, setuptoolsTrial, isort, pylint, flake8 +, buildbot-worker, buildbot-pkg, buildbot-plugins, parameterized, git, openssh +, glibcLocales , nixosTests }: @@ -42,6 +43,7 @@ let # core twisted jinja2 + msgpack zope_interface sqlalchemy alembic @@ -50,7 +52,6 @@ let autobahn pyjwt pyyaml - unidiff ] # tls ++ twisted.extras-require.tls; diff --git a/pkgs/development/python-modules/cachecontrol/default.nix b/pkgs/development/python-modules/cachecontrol/default.nix index d074183e79d..bee126fbf16 100644 --- a/pkgs/development/python-modules/cachecontrol/default.nix +++ b/pkgs/development/python-modules/cachecontrol/default.nix @@ -21,10 +21,11 @@ buildPythonPackage rec { owner = "ionrock"; repo = pname; rev = "v${version}"; - sha256 = "sha256-mgvL0q10UbPHY1H3tJprke5p8qNl3HNYoeLAERZTcTs="; + hash = "sha256-mgvL0q10UbPHY1H3tJprke5p8qNl3HNYoeLAERZTcTs="; }; propagatedBuildInputs = [ + lockfile msgpack requests ]; @@ -32,7 +33,6 @@ buildPythonPackage rec { checkInputs = [ cherrypy mock - lockfile pytestCheckHook ]; diff --git a/pkgs/development/python-modules/cachelib/default.nix b/pkgs/development/python-modules/cachelib/default.nix index 9c0620c8740..5a5c001c135 100644 --- a/pkgs/development/python-modules/cachelib/default.nix +++ b/pkgs/development/python-modules/cachelib/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "cachelib"; - version = "0.6.0"; + version = "0.7.0"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "pallets"; repo = pname; - rev = version; - sha256 = "sha256-1msDiNYxaETJfVBTaMuNJbSxhOpyRdHkb5CQ+1+ZbbQ="; + rev = "refs/tags/${version}"; + sha256 = "sha256-/378xNkBZHoTJ9Qs8RTYi+QosLs7GBgMOkIDYOaSH1Y="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/calmjs-parse/default.nix b/pkgs/development/python-modules/calmjs-parse/default.nix index 33cf052a442..8420cbd03af 100644 --- a/pkgs/development/python-modules/calmjs-parse/default.nix +++ b/pkgs/development/python-modules/calmjs-parse/default.nix @@ -8,13 +8,15 @@ buildPythonPackage rec { pname = "calmjs-parse"; - version = "1.2.5"; + version = "1.3.0"; + + format = "setuptools"; src = fetchFromGitHub { owner = "calmjs"; repo = "calmjs.parse"; rev = version; - sha256 = "0ypfbas33k1706p6w1bf9gnrv38z8fa4qci1iaks80dp58g8sv4r"; + hash = "sha256-QhHNp9g88RhGHqRRjg4nk7aXjAgGCOauOagWJoJ3fqc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/casbin/default.nix b/pkgs/development/python-modules/casbin/default.nix index f09b2ab6630..5df8ae38beb 100644 --- a/pkgs/development/python-modules/casbin/default.nix +++ b/pkgs/development/python-modules/casbin/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "casbin"; - version = "1.16.3"; + version = "1.16.5"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = pname; repo = "pycasbin"; rev = "refs/tags/v${version}"; - sha256 = "sha256-7URIk76iQ1u59RM1VeqO5qqTg+0kCPtsP+2Y5CxCZ3I="; + sha256 = "sha256-27j1iuqf0af4Cm3r32FJnWnjvvUcacuv2+1OL6z/mwM="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/catboost/default.nix b/pkgs/development/python-modules/catboost/default.nix index 8c5184240f6..6cda5a23aee 100644 --- a/pkgs/development/python-modules/catboost/default.nix +++ b/pkgs/development/python-modules/catboost/default.nix @@ -52,5 +52,7 @@ buildPythonPackage rec { platforms = [ "x86_64-linux" ]; homepage = "https://catboost.ai"; maintainers = with maintainers; [ PlushBeaver ]; + # _catboost.pyx.cpp:226822:19: error: use of undeclared identifier '_PyGen_Send' + broken = withCuda; }; } diff --git a/pkgs/development/python-modules/cheroot/default.nix b/pkgs/development/python-modules/cheroot/default.nix index 436669d9209..5535f577bcf 100644 --- a/pkgs/development/python-modules/cheroot/default.nix +++ b/pkgs/development/python-modules/cheroot/default.nix @@ -72,6 +72,7 @@ buildPythonPackage rec { ] ++ lib.optionals stdenv.isDarwin [ "http_over_https_error" "bind_addr_unix" + "test_ssl_env" ]; disabledTestPaths = [ diff --git a/pkgs/development/python-modules/chiavdf/default.nix b/pkgs/development/python-modules/chiavdf/default.nix index a4bd20f9cd6..819b6fdcda3 100644 --- a/pkgs/development/python-modules/chiavdf/default.nix +++ b/pkgs/development/python-modules/chiavdf/default.nix @@ -14,12 +14,12 @@ buildPythonPackage rec { pname = "chiavdf"; - version = "1.0.6"; + version = "1.0.7"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-Ri7j/T0nnZFml4kC0qIQkyYRJBPZMhTYxolW/A25030="; + hash = "sha256-956517eGqRSLg+Y4ybmASiZoypgpYn/D9lbPA4Rcfts="; }; patches = [ diff --git a/pkgs/development/python-modules/cirq-core/default.nix b/pkgs/development/python-modules/cirq-core/default.nix index 92045eb3e3e..74f8e488fd9 100644 --- a/pkgs/development/python-modules/cirq-core/default.nix +++ b/pkgs/development/python-modules/cirq-core/default.nix @@ -30,7 +30,7 @@ buildPythonPackage rec { pname = "cirq-core"; - version = "0.13.1"; + version = "0.14.1"; disabled = pythonOlder "3.6"; @@ -38,32 +38,17 @@ buildPythonPackage rec { owner = "quantumlib"; repo = "cirq"; rev = "v${version}"; - sha256 = "sha256-MVfJ8iEeW8gFvCNTqrWfYpNNYuDAufHgcjd7Nh3qp8U="; + sha256 = "sha256-cIDwV3IBXrTJ4jC1/HYmduY3tLe/f6wj8CWZ4cnThG8="; }; sourceRoot = "source/${pname}"; - patches = [ - # present in upstream master - remove after 0.13.1 - (fetchpatch { - name = "fix-test-tolerances.part-1.patch"; - url = "https://github.com/quantumlib/Cirq/commit/eb1d9031e55d3c8801ea44abbb6a4132b2fc5126.patch"; - sha256 = "0ka24v6dfxnap9p07ni32z9zccbmw0lbrp5mcknmpsl12hza98xm"; - stripLen = 1; - }) - (fetchpatch { - name = "fix-test-tolerances.part-2.patch"; - url = "https://github.com/quantumlib/Cirq/commit/a28d601b2bcfc393336375c53e5915fd16455395.patch"; - sha256 = "0k2dqsm4ydn6556d40kc8j04jgjn59z4wqqg1jn1r916a7yxw493"; - stripLen = 1; - }) - ]; - postPatch = '' substituteInPlace requirements.txt \ --replace "matplotlib~=3.0" "matplotlib" \ --replace "networkx~=2.4" "networkx" \ - --replace "numpy~=1.16" "numpy" + --replace "numpy~=1.16" "numpy" \ + --replace "sympy<1.10" "sympy" ''; propagatedBuildInputs = [ @@ -93,9 +78,9 @@ buildPythonPackage rec { freezegun ]; - pytestFlagsArray = lib.optionals (!withContribRequires) [ + disabledTestPaths = lib.optionals (!withContribRequires) [ # requires external (unpackaged) libraries, so untested. - "--ignore=cirq/contrib/" + "cirq/contrib/" ]; disabledTests = [ "test_metadata_search_path" # tries to import flynt, which isn't in Nixpkgs diff --git a/pkgs/development/python-modules/cirq/default.nix b/pkgs/development/python-modules/cirq/default.nix index 6e428eeb4ef..17623817e7b 100644 --- a/pkgs/development/python-modules/cirq/default.nix +++ b/pkgs/development/python-modules/cirq/default.nix @@ -1,4 +1,5 @@ { buildPythonPackage +, fetchpatch , cirq-aqt , cirq-core , cirq-google @@ -14,6 +15,14 @@ buildPythonPackage rec { pname = "cirq"; inherit (cirq-core) version src meta; + patches = [ + (fetchpatch { + url = "https://github.com/quantumlib/Cirq/commit/b832db606e5f1850b1eda168a6d4a8e77d8ec711.patch"; + name = "pr-5330-prevent-implicit-packages.patch"; + sha256 = "sha256-HTEH3fFxPiBedaz5GxZjXayvoiazwHysKZIOzqwZmbg="; + }) + ]; + propagatedBuildInputs = [ cirq-aqt cirq-core diff --git a/pkgs/development/python-modules/claripy/default.nix b/pkgs/development/python-modules/claripy/default.nix index e37f1ee8dbd..49d82215e7c 100644 --- a/pkgs/development/python-modules/claripy/default.nix +++ b/pkgs/development/python-modules/claripy/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "claripy"; - version = "9.2.3"; + version = "9.2.4"; format = "pyproject"; disabled = pythonOlder "3.6"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "v${version}"; - hash = "sha256-O2nkGIQfjGmhrqBPoMI97DsCvOUZix0VcUHwmDyF40Q="; + hash = "sha256-nP2mqBmgpn7zFtMd9suH3kfEqKtzIjaZl6ALsvihVgE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/cle/default.nix b/pkgs/development/python-modules/cle/default.nix index f626e62db0d..2c7b80b524d 100644 --- a/pkgs/development/python-modules/cle/default.nix +++ b/pkgs/development/python-modules/cle/default.nix @@ -15,7 +15,7 @@ let # The binaries are following the argr projects release cycle - version = "9.2.3"; + version = "9.2.4"; # Binary files from https://github.com/angr/binaries (only used for testing and only here) binaries = fetchFromGitHub { @@ -37,7 +37,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "v${version}"; - hash = "sha256-gyWeE4sF9Bmk2CNmXh90xMtXlaz/Agm7wX6sWr0Fyco="; + hash = "sha256-SlYayKfosSicMxMZszZpxJ3ewKScyLpv6s5ayoVE9Ko="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/click/default.nix b/pkgs/development/python-modules/click/default.nix index a75f563862a..81bcf03130e 100644 --- a/pkgs/development/python-modules/click/default.nix +++ b/pkgs/development/python-modules/click/default.nix @@ -5,23 +5,21 @@ , importlib-metadata , pytestCheckHook -# large-rebuild downstream dependencies +# large-rebuild downstream dependencies and applications , flask , black - -# applications , magic-wormhole , mitmproxy }: buildPythonPackage rec { pname = "click"; - version = "8.1.2"; + version = "8.1.3"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-R5cH/hTZ7JoHV2GLehAKCuTE4jb6xbf4DKaAKBQaGnI="; + sha256 = "sha256-doLcivswKXABZ0V16gDRgU2AjWo2r0Fagr1IHTe6e44="; }; propagatedBuildInputs = lib.optionals (pythonOlder "3.8") [ diff --git a/pkgs/development/python-modules/crownstone-core/default.nix b/pkgs/development/python-modules/crownstone-core/default.nix index be23d054a4e..ffc3e8a7667 100644 --- a/pkgs/development/python-modules/crownstone-core/default.nix +++ b/pkgs/development/python-modules/crownstone-core/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "crownstone-core"; - version = "3.1.0"; + version = "3.1.1"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "crownstone"; repo = "crownstone-lib-python-core"; rev = version; - sha256 = "sha256-ujS4ho9io7KcoK5w1SCn7UPFg1ho3dgW0HS5HfsYsuU="; + sha256 = "sha256-SdrvJE76/UrwcJ2Os1WO9cv9++LKu4eKRn1W4qrK8Lw="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/crownstone-uart/default.nix b/pkgs/development/python-modules/crownstone-uart/default.nix index 12aa1590742..1c57744c797 100644 --- a/pkgs/development/python-modules/crownstone-uart/default.nix +++ b/pkgs/development/python-modules/crownstone-uart/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "crownstone-uart"; - version = "2.3.0"; + version = "2.4.0"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "crownstone"; repo = "crownstone-lib-python-uart"; rev = version; - sha256 = "sha256-temf+uvGWMMtnhBpbYtTj6OzKqo3Xaa11Q2VX2+HTZc="; + sha256 = "sha256-oCPv4siGy0POK6XeY29roKO/t8xMcJkwSO1onGNLq3E="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/cvxpy/default.nix b/pkgs/development/python-modules/cvxpy/default.nix index 73609966ba8..033af1fb5d9 100644 --- a/pkgs/development/python-modules/cvxpy/default.nix +++ b/pkgs/development/python-modules/cvxpy/default.nix @@ -16,14 +16,14 @@ buildPythonPackage rec { pname = "cvxpy"; - version = "1.2.0"; + version = "1.2.1"; format = "pyproject"; disabled = pythonOlder "3.5"; src = fetchPypi { inherit pname version; - sha256 = "sha256-QURm/ehJovqr/ZRE7ILKLnvxQsAdcjdSTPlzCt60IBw="; + sha256 = "sha256-bWdkJkPR3bLyr1m0Zrh9QsSi42eDGte0PDO1nu+ltQ4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/cyclonedx-python-lib/default.nix b/pkgs/development/python-modules/cyclonedx-python-lib/default.nix index c8a2eefed24..9e32b3e4fea 100644 --- a/pkgs/development/python-modules/cyclonedx-python-lib/default.nix +++ b/pkgs/development/python-modules/cyclonedx-python-lib/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "cyclonedx-python-lib"; - version = "2.3.0"; + version = "2.4.0"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "CycloneDX"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-eZy+m6AkSlZM/i64FyFL+ZgeW86MOSM6sDYPT4ckaHE="; + hash = "sha256-IrMXHWeksEmON3LxJvQ3WSKwQTY0aRZ8XItWMr3p4gw="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/databricks-connect/default.nix b/pkgs/development/python-modules/databricks-connect/default.nix index 1782598efd8..2a67ef167c5 100644 --- a/pkgs/development/python-modules/databricks-connect/default.nix +++ b/pkgs/development/python-modules/databricks-connect/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "databricks-connect"; - version = "9.1.15"; + version = "9.1.16"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-qXS/hgF2qKUtTfo9UZ5KBa9N0PHJqKA8SC/vgE46LmA="; + sha256 = "sha256-agdky7AhRuObU9GT8IpdgB3SWdHDBRnuoaAtYAlCv/4="; }; sourceRoot = "."; diff --git a/pkgs/development/python-modules/datatable/default.nix b/pkgs/development/python-modules/datatable/default.nix index 3d3279bb2b3..2ebb488aba7 100644 --- a/pkgs/development/python-modules/datatable/default.nix +++ b/pkgs/development/python-modules/datatable/default.nix @@ -6,6 +6,7 @@ , llvm , pytestCheckHook , typesentry +, isPy310 }: buildPythonPackage rec { @@ -63,6 +64,6 @@ buildPythonPackage rec { maintainers = with maintainers; [ abbradar ]; # uses custom build system and adds -Wunused-variable -Werror # warning: ‘dt::expr::doc_first’ defined but not used [-Wunused-variable] - broken = true; + broken = isPy310; }; } diff --git a/pkgs/development/python-modules/deepdiff/default.nix b/pkgs/development/python-modules/deepdiff/default.nix index 2601eedc2fa..c0519332342 100644 --- a/pkgs/development/python-modules/deepdiff/default.nix +++ b/pkgs/development/python-modules/deepdiff/default.nix @@ -8,20 +8,21 @@ , numpy , pytestCheckHook , pyyaml +, pythonOlder }: buildPythonPackage rec { pname = "deepdiff"; - version = "5.7.0"; + version = "5.8.2"; format = "setuptools"; - # pypi source does not contain all fixtures required for tests + disabled = pythonOlder "3.6"; + src = fetchFromGitHub { owner = "seperman"; repo = "deepdiff"; - # 5.7.0 release not tagged https://github.com/seperman/deepdiff/issues/300 - rev = "f2ffdb83b2993f4f0bb7e854620f0acd0bf6339e"; - hash = "sha256-0UBx7sH2iMrLVl5FtHNTwoecLHi8GbInn75G3FSg4gk="; + rev = "v${version}"; + hash = "sha256-7eagu6lef5bc/4KU3y067LFOGtH6whda1ocBuRHS/kI="; }; postPatch = '' @@ -52,6 +53,6 @@ buildPythonPackage rec { description = "Deep Difference and Search of any Python object/data"; homepage = "https://github.com/seperman/deepdiff"; license = licenses.mit; - maintainers = [ maintainers.mic92 ]; + maintainers = with maintainers; [ mic92 ]; }; } diff --git a/pkgs/development/python-modules/delorean/default.nix b/pkgs/development/python-modules/delorean/default.nix index 3435b461d09..847a5c6e5ad 100644 --- a/pkgs/development/python-modules/delorean/default.nix +++ b/pkgs/development/python-modules/delorean/default.nix @@ -1,7 +1,7 @@ { lib , buildPythonPackage , fetchPypi -, Babel +, babel , humanize , python-dateutil , tzlocal @@ -16,7 +16,7 @@ buildPythonPackage rec { sha256 = "0d31ay7yq2w7xz7m3ssk5phjbm64b2k8hmgcif22719k29p7hrzy"; }; - propagatedBuildInputs = [ Babel humanize python-dateutil tzlocal ]; + propagatedBuildInputs = [ babel humanize python-dateutil tzlocal ]; pythonImportsCheck = [ "delorean" ]; diff --git a/pkgs/development/python-modules/diff-cover/default.nix b/pkgs/development/python-modules/diff-cover/default.nix index 1fc50c5ef23..7d7a9afcd30 100644 --- a/pkgs/development/python-modules/diff-cover/default.nix +++ b/pkgs/development/python-modules/diff-cover/default.nix @@ -26,7 +26,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "diff_cover"; inherit version; - sha256 = "sha256-N2O0/C75EGO6crUCFGUiJLLQqfMVRNVQRZb1xKhHzXs="; + hash = "sha256-N2O0/C75EGO6crUCFGUiJLLQqfMVRNVQRZb1xKhHzXs="; }; propagatedBuildInputs = [ @@ -54,6 +54,16 @@ buildPythonPackage rec { "test_style_defs" # uses pytest.approx in a boolean context, which is unsupported since pytest7 "test_percent_covered" + # assert '<!DOCTYPE ht...ody>\n</html>' == '<!DOCTYPE ht...ody>\n</html>' + "test_html_with_external_css" + # assert '<table class...</tr></table>' == '<div class=".../table></div>' + "test_format" + "test_format_with_invalid_violation_lines" + "test_no_filename_ext" + "test_unicode" + "test_load_snippets_html" + "test_load_utf8_snippets" + "test_load_declared_arabic" ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/dirty-equals/default.nix b/pkgs/development/python-modules/dirty-equals/default.nix new file mode 100644 index 00000000000..0a448b8de7f --- /dev/null +++ b/pkgs/development/python-modules/dirty-equals/default.nix @@ -0,0 +1,49 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, poetry-core +, pytestCheckHook +, pythonOlder +, pytz +, typing-extensions +}: + +buildPythonPackage rec { + pname = "dirty-equals"; + version = "0.4"; + format = "pyproject"; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "samuelcolvin"; + repo = pname; + rev = "v${version}"; + hash = "sha256-rh7N/VRx4sv/MhhGPkaYCn2d19Sv5er2CkG6/fJuXX4="; + }; + + nativeBuildInputs = [ + poetry-core + ]; + + propagatedBuildInputs = [ + pytz + ] ++ lib.optionals (pythonOlder "3.8") [ + typing-extensions + ]; + + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "dirty_equals" + ]; + + meta = with lib; { + description = "Module for doing dirty (but extremely useful) things with equals"; + homepage = "https://github.com/samuelcolvin/dirty-equals"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/django-anymail/default.nix b/pkgs/development/python-modules/django-anymail/default.nix index 86134f9d178..83c89b53c97 100644 --- a/pkgs/development/python-modules/django-anymail/default.nix +++ b/pkgs/development/python-modules/django-anymail/default.nix @@ -12,13 +12,13 @@ buildPythonPackage rec { pname = "django-anymail"; - version = "8.5"; + version = "8.6"; src = fetchFromGitHub { owner = "anymail"; repo = pname; - rev = "v${version}"; - sha256 = "1p2c7hf9baxr8khk8h7y8d38imw4zm920dgd9nbda18vlh7gpbcf"; + rev = "refs/tags/v${version}"; + sha256 = "sha256-hLNILUV7qzqHfh7l3SJAoFveUIRSCHTjEQ3ZC3PhZUY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/django-auth-ldap/default.nix b/pkgs/development/python-modules/django-auth-ldap/default.nix index ffd4796f2a5..b3596e1e444 100644 --- a/pkgs/development/python-modules/django-auth-ldap/default.nix +++ b/pkgs/development/python-modules/django-auth-ldap/default.nix @@ -17,14 +17,14 @@ buildPythonPackage rec { pname = "django-auth-ldap"; - version = "4.0.0"; + version = "4.1.0"; format = "pyproject"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "276f79e624ce083ce13f161387f65ff1c0efe83ef8a42f2b9830d43317b15239"; + sha256 = "sha256-d/dJ07F4B86OtWqcnI5XRv8xZWf4HVumE0ldnHSVqUk="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/django-jinja2/default.nix b/pkgs/development/python-modules/django-jinja2/default.nix index 039a75aacee..305e153ce60 100644 --- a/pkgs/development/python-modules/django-jinja2/default.nix +++ b/pkgs/development/python-modules/django-jinja2/default.nix @@ -4,7 +4,7 @@ buildPythonPackage rec { pname = "django-jinja"; - version = "2.10.0"; + version = "2.10.2"; meta = { description = "Simple and nonobstructive jinja2 integration with Django"; @@ -14,7 +14,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - sha256 = "ae6a3fdf1ffa7a9ef6fd2f0a59c1a68c96b29f7f00f5166375658ef392f1ed32"; + sha256 = "sha256-v9+7VcH1pnnWmtV11VDEcH04ZjQAkVLv4BQInzxNFBI="; }; buildInputs = [ django pytz tox ]; diff --git a/pkgs/development/python-modules/djangorestframework-dataclasses/default.nix b/pkgs/development/python-modules/djangorestframework-dataclasses/default.nix new file mode 100644 index 00000000000..c6b56651f92 --- /dev/null +++ b/pkgs/development/python-modules/djangorestframework-dataclasses/default.nix @@ -0,0 +1,38 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, djangorestframework +}: + +buildPythonPackage rec { + pname = "djangorestframework-dataclasses"; + version = "1.1.1"; + + src = fetchFromGitHub { + owner = "oxan"; + repo = "djangorestframework-dataclasses"; + rev = "v${version}"; + sha256 = "sha256-wXgA/4Dik6yG0nKl9GbrHgb2lhrPsgS23+cEyaD9MRY="; + }; + + postPatch = '' + patchShebangs manage.py + ''; + + propagatedBuildInputs = [ + djangorestframework + ]; + + checkPhase = '' + ./manage.py test + ''; + + pythonImportsCheck = [ "rest_framework_dataclasses" ]; + + meta = with lib; { + description = " Dataclasses serializer for Django REST framework"; + homepage = "https://github.com/oxan/djangorestframework-dataclasses"; + license = licenses.bsd3; + maintainers = with maintainers; [ SuperSandro2000 ]; + }; +} diff --git a/pkgs/development/python-modules/djangorestframework/default.nix b/pkgs/development/python-modules/djangorestframework/default.nix index 131be8781b3..f8de884a24f 100644 --- a/pkgs/development/python-modules/djangorestframework/default.nix +++ b/pkgs/development/python-modules/djangorestframework/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchFromGitHub, django, isPy27 }: +{ lib, buildPythonPackage, fetchFromGitHub, django, pytz, isPy27 }: buildPythonPackage rec { version = "3.12.4"; @@ -15,7 +15,7 @@ buildPythonPackage rec { # Test settings are missing doCheck = false; - propagatedBuildInputs = [ django ]; + propagatedBuildInputs = [ django pytz ]; meta = with lib; { description = "Web APIs for Django, made easy"; diff --git a/pkgs/development/python-modules/doc8/default.nix b/pkgs/development/python-modules/doc8/default.nix index c02100e379e..97066662397 100644 --- a/pkgs/development/python-modules/doc8/default.nix +++ b/pkgs/development/python-modules/doc8/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "doc8"; - version = "0.11.1"; + version = "0.11.2"; format = "pyproject"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-bby1Ry79Mydj/7KGK0/e7EDIpv3Gu2fmhxOtdJylgIw="; + sha256 = "sha256-w1ojH4jxXCBGWRVO09SZ+k1ALX5j1By6e1TPXmRhI6s="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/dremel3dpy/default.nix b/pkgs/development/python-modules/dremel3dpy/default.nix new file mode 100644 index 00000000000..06de83a778a --- /dev/null +++ b/pkgs/development/python-modules/dremel3dpy/default.nix @@ -0,0 +1,50 @@ +{ lib +, async-timeout +, buildPythonPackage +, fetchPypi +, pythonOlder +, requests +, urllib3 +, validators +, yarl +}: + +buildPythonPackage rec { + pname = "dremel3dpy"; + version = "0.3.4"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; + + src = fetchPypi { + inherit pname version; + hash = "sha256-zKbHKdgMx76cYGPvPVSm39si0LfyDA4L1CcKaQzEpCw="; + }; + + propagatedBuildInputs = [ + async-timeout + requests + urllib3 + validators + yarl + ]; + + postPatch = '' + # Ignore the pinning + sed -i -e "s/==[0-9.]*//" setup.py + ''; + + # Module has no tests + doCheck = false; + + pythonImportsCheck = [ + "dremel3dpy" + ]; + + meta = with lib; { + description = "Module for interacting with Dremel 3D printers"; + homepage = "https://github.com/godely/dremel3dpy"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/dropbox/default.nix b/pkgs/development/python-modules/dropbox/default.nix index 4184ddb1250..e321c110a6b 100644 --- a/pkgs/development/python-modules/dropbox/default.nix +++ b/pkgs/development/python-modules/dropbox/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "dropbox"; - version = "11.30.0"; + version = "11.31.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -22,8 +22,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "dropbox"; repo = "dropbox-sdk-python"; - rev = "v${version}"; - hash = "sha256-w07r95MBAClf0F3SICiZsHLdslzf+JuxC+BVdTACCog="; + rev = "refs/tags/v${version}"; + hash = "sha256-mbBVivrpXYNuVbXeHRyy07LxPbtYvaL3JleK7QXOxi0="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/dulwich/default.nix b/pkgs/development/python-modules/dulwich/default.nix index a255d3c4f9b..ea3511e843a 100644 --- a/pkgs/development/python-modules/dulwich/default.nix +++ b/pkgs/development/python-modules/dulwich/default.nix @@ -12,11 +12,12 @@ , mock , pkgs , urllib3 +, paramiko , pythonOlder }: buildPythonPackage rec { - version = "0.20.35"; + version = "0.20.40"; pname = "dulwich"; format = "setuptools"; @@ -24,7 +25,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - hash = "sha256-lT9jAanfigkfqI1V7tOUqIv5mIzei+NBd1NUkQkYwZY="; + hash = "sha256-vtcO/gt91RpHvOqbmEqwamdddDi3izLaHLr891D7utc="; }; LC_ALL = "en_US.UTF-8"; @@ -43,6 +44,7 @@ buildPythonPackage rec { gpgme pkgs.gnupg mock + paramiko ]; doCheck = !stdenv.isDarwin; diff --git a/pkgs/development/python-modules/duo-client/default.nix b/pkgs/development/python-modules/duo-client/default.nix new file mode 100644 index 00000000000..057881ccab1 --- /dev/null +++ b/pkgs/development/python-modules/duo-client/default.nix @@ -0,0 +1,47 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, mock +, nose2 +, pytz +, setuptools +, six +}: + +buildPythonPackage rec { + pname = "duo-client"; + version = "4.4.0"; + + src = fetchFromGitHub { + owner = "duosecurity"; + repo = "duo_client_python"; + rev = version; + sha256 = "sha256-2sodExb66+Y+aPvm+DkibPt0Bvwqjii+EoBWaopdq+E="; + }; + + postPatch = '' + substituteInPlace requirements-dev.txt \ + --replace "dlint" "" \ + --replace "flake8" "" + ''; + + propagatedBuildInputs = [ + setuptools + six + ]; + + checkInputs = [ + mock + nose2 + pytz + ]; + + pythonImportsCheck = [ "duo_client" ]; + + meta = with lib; { + description = "Python library for interacting with the Duo Auth, Admin, and Accounts APIs"; + homepage = "https://github.com/duosecurity/duo_client_python"; + license = licenses.bsd3; + maintainers = with maintainers; [ SuperSandro2000 ]; + }; +} diff --git a/pkgs/development/python-modules/ecs-logging/default.nix b/pkgs/development/python-modules/ecs-logging/default.nix index f82149ac867..01298469f8d 100644 --- a/pkgs/development/python-modules/ecs-logging/default.nix +++ b/pkgs/development/python-modules/ecs-logging/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "ecs-logging"; - version = "1.1.0"; + version = "2.0.0"; format = "flit"; disabled = pythonOlder "3.8"; @@ -16,8 +16,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "elastic"; repo = "ecs-logging-python"; - rev = version; - sha256 = "sha256-UcQh/+K2d4tiMZaz4IAZ2w/B88vEkHoq2LCPMNZ95Mo="; + rev = "refs/tags/${version}"; + sha256 = "sha256-2BfZ96D24sfjFD6l+gjp6xXbSJ0kjQD/FhHLI3bpVGM="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/elementpath/default.nix b/pkgs/development/python-modules/elementpath/default.nix index e3104d8d882..7f855242ebb 100644 --- a/pkgs/development/python-modules/elementpath/default.nix +++ b/pkgs/development/python-modules/elementpath/default.nix @@ -6,7 +6,7 @@ buildPythonPackage rec { pname = "elementpath"; - version = "2.5.1"; + version = "2.5.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -15,7 +15,7 @@ buildPythonPackage rec { owner = "sissaschool"; repo = "elementpath"; rev = "refs/tags/v${version}"; - hash = "sha256-tejsQ6m9XyMGDIEDzWYwSav5Iqa9S/DIYShOpoSlTWo="; + hash = "sha256-JmNG6SXig24X34nQXrpMN9ir9+l8o23ddzw2uyR3qb0="; }; # avoid circular dependency with xmlschema which directly depends on this diff --git a/pkgs/development/python-modules/embrace/default.nix b/pkgs/development/python-modules/embrace/default.nix index 414425ed6f2..9b80c5d689b 100644 --- a/pkgs/development/python-modules/embrace/default.nix +++ b/pkgs/development/python-modules/embrace/default.nix @@ -1,21 +1,26 @@ -{ lib, buildPythonPackage, fetchFromSourcehut, sqlparse, wrapt, pytestCheckHook }: +{ stdenv, lib, buildPythonPackage, fetchFromSourcehut, + sqlparse, wrapt, pytestCheckHook }: buildPythonPackage rec { pname = "embrace"; - version = "4.0.0"; + version = "4.1.0"; src = fetchFromSourcehut { vc = "hg"; owner = "~olly"; repo = "embrace-sql"; rev = "v${version}-release"; - sha256 = "sha256-G/7FeKlMbOWobQOpD7/0JiTFpf8oWZ1TxPpDS9wrKMo="; + sha256 = "sha256-R6Ug4f8KFZNzaNWqWZkLvOwtsawCuerzvHlysr7bd6M="; }; propagatedBuildInputs = [ sqlparse wrapt ]; checkInputs = [ pytestCheckHook ]; pythonImportsCheck = [ "embrace" ]; + # Some test for hot-reload fails on Darwin, but the rest of the library + # should remain usable. (https://todo.sr.ht/~olly/embrace-sql/4) + doCheck = !stdenv.isDarwin; + meta = with lib; { description = "Embrace SQL keeps your SQL queries in SQL files"; homepage = "https://pypi.org/project/embrace/"; diff --git a/pkgs/development/python-modules/fakeredis/default.nix b/pkgs/development/python-modules/fakeredis/default.nix index f5a28fa3839..a75f2e3da95 100644 --- a/pkgs/development/python-modules/fakeredis/default.nix +++ b/pkgs/development/python-modules/fakeredis/default.nix @@ -16,14 +16,14 @@ buildPythonPackage rec { pname = "fakeredis"; - version = "1.7.4"; + version = "1.7.5"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-aWl//usJk5BzYF7qyX9SS8yrrgQmV1eldcf8kjCHqmU="; + hash = "sha256-STdcYwmB3UBF2akuJwn81Edskfkn4CKEk+76Yl5wUTM="; }; postPatch = '' diff --git a/pkgs/development/python-modules/fastavro/default.nix b/pkgs/development/python-modules/fastavro/default.nix index 419cb74c2cf..e4d1bca5730 100644 --- a/pkgs/development/python-modules/fastavro/default.nix +++ b/pkgs/development/python-modules/fastavro/default.nix @@ -15,14 +15,14 @@ buildPythonPackage rec { pname = "fastavro"; - version = "1.4.11"; + version = "1.4.12"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "refs/tags/${version}"; - sha256 = "sha256-PK8+NFJurJ0nD5coEFj8lXWg4VMcpX0954qDb1GW6Gk="; + sha256 = "sha256-t3SM7pTsl3JLWeJSESzXGONyjufwCHMaqK95JI3isYY="; }; preBuild = '' diff --git a/pkgs/development/python-modules/fastcore/default.nix b/pkgs/development/python-modules/fastcore/default.nix index e86013605e7..a9781b3aea1 100644 --- a/pkgs/development/python-modules/fastcore/default.nix +++ b/pkgs/development/python-modules/fastcore/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "fastcore"; - version = "1.4.2"; + version = "1.4.3"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "fastai"; repo = pname; rev = "refs/tags/${version}"; - sha256 = "sha256-0q+qFrfMsXkwgu08igt2kHZ9c3/aqz/inCpJXkPZsdg="; + sha256 = "sha256-3l5bELb5f/cvh4gF2kJZEX6kAK9achTerIIplMuesTk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/fastjsonschema/default.nix b/pkgs/development/python-modules/fastjsonschema/default.nix index 23a552a9b4c..f4551b65bd3 100644 --- a/pkgs/development/python-modules/fastjsonschema/default.nix +++ b/pkgs/development/python-modules/fastjsonschema/default.nix @@ -1,4 +1,5 @@ { lib +, stdenv , buildPythonPackage , fetchFromGitHub , pytestCheckHook @@ -31,6 +32,8 @@ buildPythonPackage rec { # these tests require network access "remote ref" "definitions" + ] ++ lib.optionals stdenv.isDarwin [ + "test_compile_to_code_custom_format" # cannot import temporary module created during test ]; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/feedparser/default.nix b/pkgs/development/python-modules/feedparser/default.nix index 39f13999d5c..d594f8c8ad5 100644 --- a/pkgs/development/python-modules/feedparser/default.nix +++ b/pkgs/development/python-modules/feedparser/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "feedparser"; - version = "6.0.8"; + version = "6.0.9"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-XOBBCgWrJIyMfPyjoOoiA5aO6f9EhgZzea9IJ6WflmE="; + sha256 = "sha256-2tQue+rsVfmcCLKwz3KIvHz9JLb3LI74VHi8tVZIzUI="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/flask-babel/default.nix b/pkgs/development/python-modules/flask-babel/default.nix index 602564d1626..a538327650b 100644 --- a/pkgs/development/python-modules/flask-babel/default.nix +++ b/pkgs/development/python-modules/flask-babel/default.nix @@ -3,7 +3,7 @@ , python , fetchPypi , flask -, Babel +, babel , jinja2 , pytz , speaklater @@ -20,7 +20,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ flask - Babel + babel jinja2 pytz speaklater diff --git a/pkgs/development/python-modules/flask-babelex/default.nix b/pkgs/development/python-modules/flask-babelex/default.nix index cdcb400983b..4a7294540e1 100644 --- a/pkgs/development/python-modules/flask-babelex/default.nix +++ b/pkgs/development/python-modules/flask-babelex/default.nix @@ -2,7 +2,7 @@ , buildPythonPackage , fetchPypi , flask -, Babel +, babel , speaklater , jinja2 , pytest @@ -20,7 +20,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ flask - Babel + babel speaklater jinja2 ]; diff --git a/pkgs/development/python-modules/flask-restful/default.nix b/pkgs/development/python-modules/flask-restful/default.nix index 25f02b87c9e..cefedfe7fc3 100644 --- a/pkgs/development/python-modules/flask-restful/default.nix +++ b/pkgs/development/python-modules/flask-restful/default.nix @@ -10,6 +10,7 @@ , pythonOlder , pytz , six +, werkzeug }: buildPythonPackage rec { @@ -25,7 +26,7 @@ buildPythonPackage rec { hash = "sha256-zOxlC4NdSBkhOMhTKa4Dc15s7VjpstnCFG1shMBvpT4="; }; - patches = [ + patches = lib.optionals (lib.versionAtLeast werkzeug.version "2.1.0") [ ./werkzeug-2.1.0-compat.patch ]; diff --git a/pkgs/development/python-modules/flask-security-too/default.nix b/pkgs/development/python-modules/flask-security-too/default.nix index 70a6b6e1d6b..789060ed2b5 100644 --- a/pkgs/development/python-modules/flask-security-too/default.nix +++ b/pkgs/development/python-modules/flask-security-too/default.nix @@ -3,7 +3,7 @@ , fetchPypi # extras: babel -, Babel +, babel , flask-babel # extras: common @@ -65,7 +65,7 @@ buildPythonPackage rec { passthru.extras-require = { babel = [ - Babel + babel flask-babel ]; common = [ diff --git a/pkgs/development/python-modules/flask/default.nix b/pkgs/development/python-modules/flask/default.nix index 997a28de1e9..e4ded57576e 100644 --- a/pkgs/development/python-modules/flask/default.nix +++ b/pkgs/development/python-modules/flask/default.nix @@ -13,12 +13,12 @@ }: buildPythonPackage rec { - version = "2.1.1"; + version = "2.1.2"; pname = "Flask"; src = fetchPypi { inherit pname version; - sha256 = "sha256-qMm9PlWOyZZG0Xepc5xB3x3tBilIC0yNKXVBLzyVGcg="; + sha256 = "sha256-MV3tLd+KYoFWftsnOTAQ/jQGGIuvv+ZaMznVeH2J5Hc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/flaskbabel/default.nix b/pkgs/development/python-modules/flaskbabel/default.nix index d15950bba9a..a0e42e60c2e 100644 --- a/pkgs/development/python-modules/flaskbabel/default.nix +++ b/pkgs/development/python-modules/flaskbabel/default.nix @@ -4,7 +4,7 @@ , flask , jinja2 , speaklater -, Babel +, babel , pytz }: @@ -17,7 +17,7 @@ buildPythonPackage rec { sha256 = "f9faf45cdb2e1a32ea2ec14403587d4295108f35017a7821a2b1acb8cfd9257d"; }; - propagatedBuildInputs = [ flask jinja2 speaklater Babel pytz ]; + propagatedBuildInputs = [ flask jinja2 speaklater babel pytz ]; meta = with lib; { description = "Adds i18n/l10n support to Flask applications"; diff --git a/pkgs/development/python-modules/fsspec/default.nix b/pkgs/development/python-modules/fsspec/default.nix index fb84371e203..7ff15774889 100644 --- a/pkgs/development/python-modules/fsspec/default.nix +++ b/pkgs/development/python-modules/fsspec/default.nix @@ -7,6 +7,8 @@ , numpy , aiohttp , pytest-vcr +, pytest-mock +, pytest-asyncio , requests , paramiko , smbprotocol @@ -14,14 +16,14 @@ buildPythonPackage rec { pname = "fsspec"; - version = "2022.01.0"; + version = "2022.3.0"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "intake"; repo = "filesystem_spec"; rev = version; - sha256 = "sha256-iPe2q9hY3ZRIKQGpxrHda3t9G0AtbtohVcWdnAzlzCo="; + sha256 = "sha256-jTF8R0kaHMsCYg+7YFi21Homn63K+ulp9NDZC/jkIXM="; }; propagatedBuildInputs = [ @@ -34,6 +36,8 @@ buildPythonPackage rec { checkInputs = [ numpy pytest-vcr + pytest-mock + pytest-asyncio pytestCheckHook ]; @@ -59,6 +63,7 @@ buildPythonPackage rec { meta = with lib; { homepage = "https://github.com/intake/filesystem_spec"; description = "A specification that Python filesystems should adhere to"; + changelog = "https://github.com/fsspec/filesystem_spec/raw/${version}/docs/source/changelog.rst"; license = licenses.bsd3; maintainers = [ maintainers.costrouc ]; }; diff --git a/pkgs/development/python-modules/func-timeout/default.nix b/pkgs/development/python-modules/func-timeout/default.nix new file mode 100644 index 00000000000..f20f5dde8b4 --- /dev/null +++ b/pkgs/development/python-modules/func-timeout/default.nix @@ -0,0 +1,29 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "func-timeout"; + version = "4.3.5"; + + src = fetchPypi { + pname = "func_timeout"; + inherit version; + sha256 = "74cd3c428ec94f4edfba81f9b2f14904846d5ffccc27c92433b8b5939b5575dd"; + }; + + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ "func_timeout" ]; + + meta = with lib; { + description = "Allows you to specify timeouts when calling any existing function. Also provides support for stoppable-threads"; + homepage = "https://github.com/kata198/func_timeout"; + license = licenses.lgpl3Only; + maintainers = with maintainers; [ SuperSandro2000 ]; + }; +} diff --git a/pkgs/development/python-modules/gcal-sync/default.nix b/pkgs/development/python-modules/gcal-sync/default.nix index 101a3ef53d6..33a19779ba1 100644 --- a/pkgs/development/python-modules/gcal-sync/default.nix +++ b/pkgs/development/python-modules/gcal-sync/default.nix @@ -12,15 +12,15 @@ buildPythonPackage rec { pname = "gcal-sync"; - version = "0.7.1"; + version = "0.9.0"; disabled = pythonOlder "3.9"; src = fetchFromGitHub { owner = "allenporter"; repo = "gcal_sync"; - rev = version; - hash = "sha256-NOB74P+5i63FEeHJsPXRdRgY6iyIUEn7BogbVKm8P5M="; + rev = "refs/tags/${version}"; + hash = "sha256-7XvwN1sShvmg7Co3FyzPYJFCe961Ly4/854A1po22ds="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/gcsfs/default.nix b/pkgs/development/python-modules/gcsfs/default.nix index 518226f34dd..82791db5bcc 100644 --- a/pkgs/development/python-modules/gcsfs/default.nix +++ b/pkgs/development/python-modules/gcsfs/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "gcsfs"; - version = "2022.01.0"; + version = "2022.3.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "fsspec"; repo = pname; rev = version; - hash = "sha256-wNeK1GdjK9GKaaECcFeBLjFf/h3MbLI5e4MX0UNoTqE="; + hash = "sha256-+Bchwsa8Jj7WBWbzyH+GQuqZki4EltMryumKt4Pm1es="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/genshi/default.nix b/pkgs/development/python-modules/genshi/default.nix index be6abbd8364..6dd458fefb4 100644 --- a/pkgs/development/python-modules/genshi/default.nix +++ b/pkgs/development/python-modules/genshi/default.nix @@ -7,11 +7,11 @@ buildPythonPackage rec { pname = "Genshi"; - version = "0.7.6"; + version = "0.7.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-NKLOi4DoQ/Ygxbe35ZqqNip2zpdkpvEQMig+2UWMOlk="; + sha256 = "sha256-wQBSCGLNaQhdEO4ah+kSief1n2s9m9Yiv1iygE5rmqs="; }; # FAIL: test_sanitize_remove_script_elem (genshi.filters.tests.html.HTMLSanitizerTestCase) diff --git a/pkgs/development/python-modules/geocachingapi/default.nix b/pkgs/development/python-modules/geocachingapi/default.nix index 9d757273178..7bc12f10319 100644 --- a/pkgs/development/python-modules/geocachingapi/default.nix +++ b/pkgs/development/python-modules/geocachingapi/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "geocachingapi"; - version = "0.2.1"; + version = "0.2.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "Sholofly"; repo = "geocachingapi-python"; rev = "refs/tags/${version}"; - sha256 = "sha256-36CkbwRDpMTprsZuPJ9khSrzqLb2Sz7iCvXtJ46uTL0="; + sha256 = "sha256-EoAY3kUFCxQY2Dodwl0TWye5MTjjHvbna5AHha1UzCc="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-asset/default.nix b/pkgs/development/python-modules/google-cloud-asset/default.nix index d28cdbf0844..0e8281f4184 100644 --- a/pkgs/development/python-modules/google-cloud-asset/default.nix +++ b/pkgs/development/python-modules/google-cloud-asset/default.nix @@ -11,16 +11,20 @@ , proto-plus , pytest-asyncio , pytestCheckHook +, pythonOlder , mock }: buildPythonPackage rec { pname = "google-cloud-asset"; - version = "3.8.1"; + version = "3.9.0"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-DvbHQV71hTsWtjN/D1+bHGLSss+UidCZRi3J0zTa07U="; + hash = "sha256-DMRBAzGlByjcdLr/HnVxFxbNWK1TbYFpYKEjDdzfEeg="; }; propagatedBuildInputs = [ @@ -33,7 +37,12 @@ buildPythonPackage rec { proto-plus ]; - checkInputs = [ google-cloud-testutils mock pytest-asyncio pytestCheckHook ]; + checkInputs = [ + google-cloud-testutils + mock + pytest-asyncio + pytestCheckHook + ]; pythonImportsCheck = [ "google.cloud.asset" diff --git a/pkgs/development/python-modules/google-cloud-datastore/default.nix b/pkgs/development/python-modules/google-cloud-datastore/default.nix index d2afea058d0..1212f21e9ba 100644 --- a/pkgs/development/python-modules/google-cloud-datastore/default.nix +++ b/pkgs/development/python-modules/google-cloud-datastore/default.nix @@ -13,11 +13,11 @@ buildPythonPackage rec { pname = "google-cloud-datastore"; - version = "2.5.1"; + version = "2.6.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-1fpWovsg60uyAGps9QKXTdqV4WqZOOyeDFxX8YfgAMc="; + sha256 = "sha256-6DHp8kz+CiZkzXDxPfT7KB4Yh11CwcEj3MTn5yd404Q="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-dlp/default.nix b/pkgs/development/python-modules/google-cloud-dlp/default.nix index 1961789e3b5..5dfc9768653 100644 --- a/pkgs/development/python-modules/google-cloud-dlp/default.nix +++ b/pkgs/development/python-modules/google-cloud-dlp/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "google-cloud-dlp"; - version = "3.6.2"; + version = "3.7.0"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-MMTeoyC30MW9NdrXLAqelIeeIdsdNi7u5zwVhLeeTyk="; + hash = "sha256-aUabWEz+ou12Lgys7PZnldjHnifPWPPqO8iJqkDgx9U="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-firestore/default.nix b/pkgs/development/python-modules/google-cloud-firestore/default.nix index bc22afe4614..a8ed0be5e0e 100644 --- a/pkgs/development/python-modules/google-cloud-firestore/default.nix +++ b/pkgs/development/python-modules/google-cloud-firestore/default.nix @@ -13,11 +13,11 @@ buildPythonPackage rec { pname = "google-cloud-firestore"; - version = "2.4.0"; + version = "2.5.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-9+esejwSitfYEkD03KsPiTIKxmYhRxTrgfy3QKqIIO4="; + sha256 = "sha256-g/IgGlVWHjkqJKDFvkmp/TVNA0TgN+Xf65M10+x3f+o="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-language/default.nix b/pkgs/development/python-modules/google-cloud-language/default.nix index c4caa9474e4..2eb6869492f 100644 --- a/pkgs/development/python-modules/google-cloud-language/default.nix +++ b/pkgs/development/python-modules/google-cloud-language/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "google-cloud-language"; - version = "2.4.1"; + version = "2.4.2"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-BhQQ4QZ7GbacjpLLg5LXm1g5IhIMk3tJdDrHZLquuTk="; + sha256 = "sha256-kxJySGikHdichitekEiPjzs48bDqWaXMBhmI6IAwKRM="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-speech/default.nix b/pkgs/development/python-modules/google-cloud-speech/default.nix index 72e9f672047..cd797240cc7 100644 --- a/pkgs/development/python-modules/google-cloud-speech/default.nix +++ b/pkgs/development/python-modules/google-cloud-speech/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "google-cloud-speech"; - version = "2.13.1"; + version = "2.14.0"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-JxhIC4OMsXjdJYNDomEhmHPUCzveFS0oeDWsX/wd5zA="; + hash = "sha256-D8t8+rscImUvpHCEFGTzLU5FpAMZ62iHhRfLzUXqGV8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-translate/default.nix b/pkgs/development/python-modules/google-cloud-translate/default.nix index c36bd09ba7c..4a9398ac4b4 100644 --- a/pkgs/development/python-modules/google-cloud-translate/default.nix +++ b/pkgs/development/python-modules/google-cloud-translate/default.nix @@ -14,14 +14,14 @@ buildPythonPackage rec { pname = "google-cloud-translate"; - version = "3.7.2"; + version = "3.7.3"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-icZG33G/noii9V0rsHTG/Qe8cKDVDfASRKy2XRYM5Yg="; + hash = "sha256-c++DP97IhMKHKZqXWpVO/9Rw1q8eYs1ybNZDhviwB/A="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-resumable-media/default.nix b/pkgs/development/python-modules/google-resumable-media/default.nix index 6aca35ae9e0..41b41be8fbb 100644 --- a/pkgs/development/python-modules/google-resumable-media/default.nix +++ b/pkgs/development/python-modules/google-resumable-media/default.nix @@ -12,11 +12,11 @@ buildPythonPackage rec { pname = "google-resumable-media"; - version = "2.3.2"; + version = "2.3.3"; src = fetchPypi { inherit pname version; - sha256 = "sha256-BpJOix558VjwIC590VGtdbDqnVm5l8hQ9WvdSlo2FRM="; + sha256 = "sha256-J8UmIL02TRyBFuqsTqKvy/uBrpE5+zGZZS/KwXJL+2w="; }; propagatedBuildInputs = [ google-auth google-crc32c requests ]; diff --git a/pkgs/development/python-modules/gpt-2-simple/default.nix b/pkgs/development/python-modules/gpt-2-simple/default.nix new file mode 100644 index 00000000000..68f8cba8dc4 --- /dev/null +++ b/pkgs/development/python-modules/gpt-2-simple/default.nix @@ -0,0 +1,26 @@ +{ lib, buildPythonPackage, fetchFromGitHub, regex, requests, tqdm, numpy +, toposort, tensorflow }: + +buildPythonPackage rec { + pname = "gpt-2-simple"; + version = "0.8.1"; + + src = fetchFromGitHub { + owner = "minimaxir"; + repo = "gpt-2-simple"; + rev = "v${version}"; + sha256 = "sha256-WwD4sDcc28zXEOISJsq8e+rgaNrrgIy79Wa4J3E7Ovc="; + }; + + propagatedBuildInputs = [ regex requests tqdm numpy toposort tensorflow ]; + + dontCheck = true; # no tests in upstream + + meta = with lib; { + description = + "Easily retrain OpenAI's GPT-2 text-generating model on new texts"; + homepage = "https://github.com/minimaxir/gpt-2-simple"; + license = licenses.mit; + maintainers = with maintainers; [ ckie ]; + }; +} diff --git a/pkgs/development/python-modules/graphtage/default.nix b/pkgs/development/python-modules/graphtage/default.nix index 500d157427d..a1bec8f3a1f 100644 --- a/pkgs/development/python-modules/graphtage/default.nix +++ b/pkgs/development/python-modules/graphtage/default.nix @@ -15,14 +15,14 @@ buildPythonPackage rec { pname = "graphtage"; - version = "0.2.5"; + version = "0.2.6"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "trailofbits"; repo = pname; - rev = "v${version}"; - sha256 = "sha256-cFOTbPv7CnRdet7bx5LVq5xp9LG4yNm0oxlW5aSEeZs="; + rev = "refs/tags/v${version}"; + sha256 = "sha256-ZazqtrrCsoeJK7acj7Unpl+ZI2JL/khMN2aOSHdCHl0="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/grpcio-status/default.nix b/pkgs/development/python-modules/grpcio-status/default.nix index 173353fc9f2..794d504337e 100644 --- a/pkgs/development/python-modules/grpcio-status/default.nix +++ b/pkgs/development/python-modules/grpcio-status/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "grpcio-status"; - version = "1.45.0"; + version = "1.46.3"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-S6rY6Ow8RHiOA4wk49fccCWeBroJ9ApbgXhThWO6Plo="; + sha256 = "78442ac7d2813c56f9cc04f713efd7088596b10f88a4ddd09279211cc48402d5"; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/grpcio-tools/default.nix b/pkgs/development/python-modules/grpcio-tools/default.nix index b3794e8b9d4..c80bc6f9bf6 100644 --- a/pkgs/development/python-modules/grpcio-tools/default.nix +++ b/pkgs/development/python-modules/grpcio-tools/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "grpcio-tools"; - version = "1.45.0"; + version = "1.46.3"; src = fetchPypi { inherit pname version; - sha256 = "sha256-oBbPwh4NkbOwNtPU+WjR/eqGXfoDUkyx++yoRxn9RaI="; + sha256 = "31fee436ace5b3bd950cc3a8e68d6b84de1d6dc755959db7badc3470cdf22f70"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/python-modules/gruut/default.nix b/pkgs/development/python-modules/gruut/default.nix index 5078c6fdb39..ccaf7b6f038 100644 --- a/pkgs/development/python-modules/gruut/default.nix +++ b/pkgs/development/python-modules/gruut/default.nix @@ -3,7 +3,7 @@ , callPackage , pythonOlder , fetchFromGitHub -, Babel +, babel , gruut-ipa , dateparser , jsonlines @@ -54,7 +54,7 @@ buildPythonPackage rec { ''; propagatedBuildInputs = [ - Babel + babel gruut-ipa jsonlines num2words diff --git a/pkgs/development/python-modules/gst-python/default.nix b/pkgs/development/python-modules/gst-python/default.nix index c02e3b593b8..e14223c1fd6 100644 --- a/pkgs/development/python-modules/gst-python/default.nix +++ b/pkgs/development/python-modules/gst-python/default.nix @@ -5,7 +5,7 @@ , ninja , pkg-config -, python3 +, python , pygobject3 , gobject-introspection , gst-plugins-base @@ -32,7 +32,7 @@ buildPythonPackage rec { meson ninja pkg-config - python3 + python gobject-introspection gst-plugins-base ]; @@ -43,7 +43,7 @@ buildPythonPackage rec { ]; mesonFlags = [ - "-Dpygi-overrides-dir=${placeholder "out"}/${python3.sitePackages}/gi/overrides" + "-Dpygi-overrides-dir=${placeholder "out"}/${python.sitePackages}/gi/overrides" ]; doCheck = true; diff --git a/pkgs/development/python-modules/habanero/default.nix b/pkgs/development/python-modules/habanero/default.nix index 0352ec41139..0c8c724426a 100644 --- a/pkgs/development/python-modules/habanero/default.nix +++ b/pkgs/development/python-modules/habanero/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "habanero"; - version = "1.2.0"; + version = "1.2.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,8 +19,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "sckott"; repo = pname; - rev = "v${version}"; - hash = "sha256-jxaO8nCR5jhXCPjhjVLKaGeQp9JF3ECQ1+j3TOJKawg="; + rev = "refs/tags/v${version}"; + hash = "sha256-i6tgMEiaDcaBR8XfGvEMXQfTaDp1RJRosj/EfF1dQU4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/hahomematic/default.nix b/pkgs/development/python-modules/hahomematic/default.nix index 879ffbf7123..5b205523f25 100644 --- a/pkgs/development/python-modules/hahomematic/default.nix +++ b/pkgs/development/python-modules/hahomematic/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "hahomematic"; - version = "1.3.0"; + version = "1.4.0"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "danielperna84"; repo = pname; rev = "refs/tags/${version}"; - sha256 = "sha256-033iPQfFF26Ly8OVdjExDZDoQ35DXuVF7dXqokA7k/s="; + sha256 = "sha256-1JYakfs+lLCfB2Ann1QfNw+MBrB9PiixOUqdA7UgbWE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/hatasmota/default.nix b/pkgs/development/python-modules/hatasmota/default.nix index db524438d63..5f09cb3b735 100644 --- a/pkgs/development/python-modules/hatasmota/default.nix +++ b/pkgs/development/python-modules/hatasmota/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "hatasmota"; - version = "0.4.1"; + version = "0.5.0"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "emontnemery"; repo = pname; rev = "refs/tags/${version}"; - sha256 = "sha256-So3wnz6HBGlgBgBJiU4m+fFx7f8Y+6c15OCD8GFGQaE="; + sha256 = "sha256-pIMao1zZXJJVEG9J9ypWlo/JF0nmci49ANcqHJSY2AY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/hatchling/default.nix b/pkgs/development/python-modules/hatchling/default.nix index 1a95d20cff7..6385b32a48c 100644 --- a/pkgs/development/python-modules/hatchling/default.nix +++ b/pkgs/development/python-modules/hatchling/default.nix @@ -21,7 +21,7 @@ let pname = "hatchling"; - version = "0.24.0"; + version = "0.25.0"; in buildPythonPackage { inherit pname version; @@ -29,7 +29,7 @@ buildPythonPackage { src = fetchPypi { inherit pname version; - hash = "sha256-zmdl9bW688tX0vgBlsUOIB43KMrNlTU/XJtPA9/fTrk="; + hash = "sha256-k/bjZvGaOjZshVr6w3Jb7XaC1dAOlIaraFQKCth2ZII="; }; # listed in backend/src/hatchling/ouroboros.py diff --git a/pkgs/development/python-modules/herepy/default.nix b/pkgs/development/python-modules/herepy/default.nix index 71aad2650f3..045910d8a1a 100644 --- a/pkgs/development/python-modules/herepy/default.nix +++ b/pkgs/development/python-modules/herepy/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "herepy"; - version = "3.5.7"; + version = "3.5.8"; format = "setuptools"; disabled = pythonOlder "3.5"; @@ -17,8 +17,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "abdullahselek"; repo = "HerePy"; - rev = version; - hash = "sha256-iPFFEFGH3csqzDtBtLkVkUezObwiMHNbiD/mTgIrdpo="; + rev = "refs/tags/${version}"; + hash = "sha256-BwuH3GxEXiIFFM0na8Jhgp7J5TPW41/u89LWf+EprG4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/hg-commitsigs/default.nix b/pkgs/development/python-modules/hg-commitsigs/default.nix index 5c195bfe19f..a97c2be2b98 100644 --- a/pkgs/development/python-modules/hg-commitsigs/default.nix +++ b/pkgs/development/python-modules/hg-commitsigs/default.nix @@ -1,7 +1,7 @@ { lib , fetchhg , stdenv -, python3 +, python }: stdenv.mkDerivation rec { @@ -20,9 +20,9 @@ stdenv.mkDerivation rec { dontBuild = true; installPhase = '' - mkdir -p $out/lib/${python3.libPrefix}/site-packages/hgext3rd/ + mkdir -p $out/lib/${python.libPrefix}/site-packages/hgext3rd/ install -D $src/commitsigs.py \ - $out/lib/${python3.libPrefix}/site-packages/hgext3rd/ + $out/lib/${python.libPrefix}/site-packages/hgext3rd/ ''; meta = with lib; { diff --git a/pkgs/development/python-modules/httpie/default.nix b/pkgs/development/python-modules/httpie/default.nix index 4f852bb3c25..143822de63b 100644 --- a/pkgs/development/python-modules/httpie/default.nix +++ b/pkgs/development/python-modules/httpie/default.nix @@ -1,4 +1,5 @@ { lib +, stdenv , buildPythonPackage , fetchFromGitHub , installShellFiles @@ -82,6 +83,19 @@ buildPythonPackage rec { "httpie" ]; + disabledTestPaths = lib.optionals stdenv.isDarwin [ + # flaky + "tests/test_plugins_cli.py" + ]; + + disabledTests = [ + # flaky + "test_stdin_read_warning" + ] ++ lib.optionals stdenv.isDarwin [ + # flaky + "test_daemon_runner" + ]; + meta = with lib; { description = "A command line HTTP client whose goal is to make CLI human-friendly"; homepage = "https://httpie.org/"; diff --git a/pkgs/development/python-modules/huggingface-hub/default.nix b/pkgs/development/python-modules/huggingface-hub/default.nix index 3bbc8ad2669..d0eba93fb85 100644 --- a/pkgs/development/python-modules/huggingface-hub/default.nix +++ b/pkgs/development/python-modules/huggingface-hub/default.nix @@ -14,13 +14,13 @@ buildPythonPackage rec { pname = "huggingface-hub"; - version = "0.4.0"; + version = "0.6.0"; src = fetchFromGitHub { owner = "huggingface"; repo = "huggingface_hub"; - rev = "v${version}"; - sha256 = "sha256-rrkubNy60e/1VcGacYQang4yWxUzIBGySxZyq6G1arw="; + rev = "refs/tags/v${version}"; + sha256 = "sha256-jR4aqMAAQJ5a7pOe3RpCtLgdm5JVVSPsBQtube6FeqM="; }; nativeBuildInputs = [ packaging ]; @@ -41,7 +41,7 @@ buildPythonPackage rec { meta = with lib; { homepage = "https://github.com/huggingface/huggingface_hub"; description = "Download and publish models and other files on the huggingface.co hub"; - changelog = "https://github.com/huggingface/huggingface_hub/releases/tag/${version}"; + changelog = "https://github.com/huggingface/huggingface_hub/releases/tag/v${version}"; license = licenses.asl20; maintainers = with maintainers; [ ]; }; diff --git a/pkgs/development/python-modules/humanize/default.nix b/pkgs/development/python-modules/humanize/default.nix index fa13cdab0c2..299bd968594 100644 --- a/pkgs/development/python-modules/humanize/default.nix +++ b/pkgs/development/python-modules/humanize/default.nix @@ -1,25 +1,26 @@ { lib , buildPythonPackage , fetchFromGitHub +, freezegun +, importlib-metadata +, pytestCheckHook , pythonOlder -, setuptools-scm , setuptools -, pytestCheckHook -, freezegun +, setuptools-scm }: buildPythonPackage rec { - version = "4.0.0"; + version = "4.1.0"; pname = "humanize"; format = "pyproject"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { - owner = "jmoiron"; + owner = "python-humanize"; repo = pname; rev = version; - sha256 = "sha256-v4OdZmUI2LCick4qCSGOHJ7jtWybwKTeTeIcly+QQQQ="; + hash = "sha256-5xL3gfEohDjnF085Pgx/PBXWWM76X4FU2KR+8OGshMw="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; @@ -30,6 +31,8 @@ buildPythonPackage rec { propagatedBuildInputs = [ setuptools + ] ++ lib.optionals (pythonOlder "3.8") [ + importlib-metadata ]; checkInputs = [ @@ -37,11 +40,14 @@ buildPythonPackage rec { pytestCheckHook ]; + pythonImportsCheck = [ + "humanize" + ]; + meta = with lib; { description = "Python humanize utilities"; - homepage = "https://github.com/jmoiron/humanize"; + homepage = "https://github.com/python-humanize/humanize"; license = licenses.mit; maintainers = with maintainers; [ rmcgibbo ]; }; - } diff --git a/pkgs/development/python-modules/humblewx/default.nix b/pkgs/development/python-modules/humblewx/default.nix index 7fd0b0e8dd9..58672a3663e 100644 --- a/pkgs/development/python-modules/humblewx/default.nix +++ b/pkgs/development/python-modules/humblewx/default.nix @@ -2,7 +2,7 @@ , fetchFromGitHub , buildPythonPackage , wxPython_4_0 -, python3 +, python }: buildPythonPackage rec { @@ -22,7 +22,7 @@ buildPythonPackage rec { checkPhase = '' runHook preCheck for i in examples/*; do - ${python3.interpreter} $i + ${python.interpreter} $i done runHook postCheck ''; diff --git a/pkgs/development/python-modules/identify/default.nix b/pkgs/development/python-modules/identify/default.nix index 5fb9c1a0e9b..4a9f68fed72 100644 --- a/pkgs/development/python-modules/identify/default.nix +++ b/pkgs/development/python-modules/identify/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "identify"; - version = "2.5.0"; + version = "2.5.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "pre-commit"; repo = pname; rev = "v${version}"; - sha256 = "sha256-gbR2z4mo5EFHS2N3pg5mwFQAfL9ysqYaC+tSSYBK7YI="; + sha256 = "sha256-D66bw014FWGf26rG0e65wg6F/N1bl0z/Uemq+jUxJ74="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/ihatemoney/default.nix b/pkgs/development/python-modules/ihatemoney/default.nix index 5092175b50c..459ebe5ad51 100644 --- a/pkgs/development/python-modules/ihatemoney/default.nix +++ b/pkgs/development/python-modules/ihatemoney/default.nix @@ -5,7 +5,7 @@ , fetchPypi , alembic , aniso8601 -, Babel +, babel , blinker , cachetools , click @@ -54,7 +54,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ aniso8601 - Babel + babel blinker cachetools click diff --git a/pkgs/development/python-modules/ijson/default.nix b/pkgs/development/python-modules/ijson/default.nix index 3f65b9291ae..3211aed644e 100644 --- a/pkgs/development/python-modules/ijson/default.nix +++ b/pkgs/development/python-modules/ijson/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi }: +{ lib, buildPythonPackage, fetchPypi, yajl, cffi, pytestCheckHook }: buildPythonPackage rec { pname = "ijson"; @@ -9,7 +9,11 @@ buildPythonPackage rec { sha256 = "1d1003ae3c6115ec9b587d29dd136860a81a23c7626b682e2b5b12c9fd30e4ea"; }; - doCheck = false; # something about yajl + buildInputs = [ yajl ]; + propagatedBuildInputs = [ cffi ]; + checkInputs = [ pytestCheckHook ]; + + doCheck = true; meta = with lib; { description = "Iterative JSON parser with a standard Python iterator interface"; diff --git a/pkgs/development/python-modules/internetarchive/default.nix b/pkgs/development/python-modules/internetarchive/default.nix index c50563f5500..1dedac88b8e 100644 --- a/pkgs/development/python-modules/internetarchive/default.nix +++ b/pkgs/development/python-modules/internetarchive/default.nix @@ -56,5 +56,6 @@ buildPythonPackage rec { changelog = "https://github.com/jjjake/internetarchive/raw/v${version}/HISTORY.rst"; license = licenses.agpl3Plus; maintainers = [ maintainers.marsam ]; + mainProgram = "ia"; }; } diff --git a/pkgs/development/python-modules/ipympl/default.nix b/pkgs/development/python-modules/ipympl/default.nix index 226fea5b621..d17a4a85c3b 100644 --- a/pkgs/development/python-modules/ipympl/default.nix +++ b/pkgs/development/python-modules/ipympl/default.nix @@ -8,12 +8,12 @@ buildPythonPackage rec { pname = "ipympl"; - version = "0.9.0"; + version = "0.9.1"; format = "wheel"; src = fetchPypi { inherit pname version format; - sha256 = "sha256-HpO3T/zRbimxd1+nUkbSmclj7nPsMYuSUK0VJItZQs4="; + sha256 = "sha256-NQW0ctQSF4/RFeJVdk0efnYy1sgunebWKyVDijU3RoA="; }; diff --git a/pkgs/development/python-modules/jc/default.nix b/pkgs/development/python-modules/jc/default.nix index d7f8e6c5a1b..cff3ad1c737 100644 --- a/pkgs/development/python-modules/jc/default.nix +++ b/pkgs/development/python-modules/jc/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "jc"; - version = "1.18.8"; + version = "1.19.0"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "kellyjonbrazil"; repo = pname; rev = "v${version}"; - sha256 = "sha256-tZrvWMt0qdOFTNeL99mZGFl8bVDGCqj25zVl7QvXQLw="; + sha256 = "sha256-0UOU4arSCh+5l258mwZQLNf/JUbPcTgcHtusiTyYPwg="; }; propagatedBuildInputs = [ ruamel-yaml xmltodict pygments ]; diff --git a/pkgs/development/python-modules/jenkins-job-builder/default.nix b/pkgs/development/python-modules/jenkins-job-builder/default.nix index 99c5aff43c0..49b7dd44c60 100644 --- a/pkgs/development/python-modules/jenkins-job-builder/default.nix +++ b/pkgs/development/python-modules/jenkins-job-builder/default.nix @@ -9,11 +9,11 @@ buildPythonPackage rec { pname = "jenkins-job-builder"; - version = "4.0.0"; + version = "4.1.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-6bsiq3LwlBZdF378HXEIgZSKf7NsTjo3bbSmt7XkYgM="; + sha256 = "sha256-5jCltdomD4u5LZrYJFUHB/sLORXYuWoeJOalAci0+XQ="; }; postPatch = '' diff --git a/pkgs/development/python-modules/jinja2/default.nix b/pkgs/development/python-modules/jinja2/default.nix index 29b08df8e0f..8f9113c98de 100644 --- a/pkgs/development/python-modules/jinja2/default.nix +++ b/pkgs/development/python-modules/jinja2/default.nix @@ -3,24 +3,24 @@ , buildPythonPackage , pythonOlder , fetchPypi -, Babel +, babel , markupsafe , pytestCheckHook }: buildPythonPackage rec { pname = "Jinja2"; - version = "3.1.1"; + version = "3.1.2"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-ZAvtS7UBy9FxlLPKzh3CEm9bYZzwaKcmuYGSoP3nSuk="; + sha256 = "sha256-MTUacCpAip51laj8YVD8P0O7a/fjGXcMvA2535Q36FI="; }; propagatedBuildInputs = [ - Babel + babel markupsafe ]; diff --git a/pkgs/development/python-modules/jsonschema/default.nix b/pkgs/development/python-modules/jsonschema/default.nix index dd2a47f1bcb..202e047dd8e 100644 --- a/pkgs/development/python-modules/jsonschema/default.nix +++ b/pkgs/development/python-modules/jsonschema/default.nix @@ -4,9 +4,7 @@ , fetchPypi , importlib-metadata , importlib-resources -, pyperf , pyrsistent -, pytestCheckHook , pythonOlder , setuptools-scm , twisted @@ -15,16 +13,20 @@ buildPythonPackage rec { pname = "jsonschema"; - version = "4.4.0"; + version = "4.5.1"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "636694eb41b3535ed608fe04129f26542b59ed99808b4f688aa32dcf55317a83"; + sha256 = "sha256-fG2IJhk0DDNHob9zFeFH5tPa5DkDOuY4PWrLkIwQHfw="; }; + postPatch = '' + patchShebangs json/bin/jsonschema_suite + ''; + SETUPTOOLS_SCM_PRETEND_VERSION = version; nativeBuildInputs = [ @@ -42,18 +44,21 @@ buildPythonPackage rec { ]; checkInputs = [ - pyperf - pytestCheckHook twisted ]; + checkPhase = '' + export JSON_SCHEMA_TEST_SUITE=json + trial jsonschema + ''; + pythonImportsCheck = [ "jsonschema" ]; meta = with lib; { description = "An implementation of JSON Schema validation for Python"; - homepage = "https://github.com/Julian/jsonschema"; + homepage = "https://github.com/python-jsonschema/jsonschema"; license = licenses.mit; maintainers = with maintainers; [ domenkozar ]; }; diff --git a/pkgs/development/python-modules/jupyterlab_server/default.nix b/pkgs/development/python-modules/jupyterlab_server/default.nix index e612cfaeab0..3fde727d148 100644 --- a/pkgs/development/python-modules/jupyterlab_server/default.nix +++ b/pkgs/development/python-modules/jupyterlab_server/default.nix @@ -6,7 +6,7 @@ , requests , pytestCheckHook , pyjson5 -, Babel +, babel , jupyter_server , openapi-core , pytest-tornasync @@ -32,7 +32,7 @@ buildPythonPackage rec { rm -r tests/translations/ ''; - propagatedBuildInputs = [ requests jsonschema pyjson5 Babel jupyter_server ]; + propagatedBuildInputs = [ requests jsonschema pyjson5 babel jupyter_server ]; checkInputs = [ openapi-core diff --git a/pkgs/development/python-modules/kajiki/default.nix b/pkgs/development/python-modules/kajiki/default.nix index 6dd55a4876f..76289816a2a 100644 --- a/pkgs/development/python-modules/kajiki/default.nix +++ b/pkgs/development/python-modules/kajiki/default.nix @@ -1,7 +1,7 @@ { lib , buildPythonPackage , fetchPypi -, Babel +, babel , pytz , nine , pytestCheckHook @@ -16,7 +16,7 @@ buildPythonPackage rec { sha256 = "f0d6dfa27eb2b6c0d2a28ae21d69dceb5363cc0432f4045bcc98aac42a662ccb"; }; - propagatedBuildInputs = [ Babel pytz nine ]; + propagatedBuildInputs = [ babel pytz nine ]; checkInputs = [ pytestCheckHook ]; meta = with lib; { diff --git a/pkgs/development/python-modules/lektor/default.nix b/pkgs/development/python-modules/lektor/default.nix index 600304f48a1..4688b7394cc 100644 --- a/pkgs/development/python-modules/lektor/default.nix +++ b/pkgs/development/python-modules/lektor/default.nix @@ -1,5 +1,5 @@ { lib -, Babel +, babel , buildPythonPackage , click , exifread @@ -40,7 +40,7 @@ buildPythonPackage rec { }; propagatedBuildInputs = [ - Babel + babel click exifread filetype diff --git a/pkgs/development/python-modules/logi-circle/default.nix b/pkgs/development/python-modules/logi-circle/default.nix new file mode 100644 index 00000000000..4894bfe2629 --- /dev/null +++ b/pkgs/development/python-modules/logi-circle/default.nix @@ -0,0 +1,46 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, aiohttp +, python-slugify +, pytz +, aresponses +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "logi-circle"; + version = "0.2.3"; + + disabled = pythonOlder "3.6"; + + format = "setuptools"; + + src = fetchFromGitHub { + owner = "evanjd"; + repo = "python-logi-circle"; + rev = "v${version}"; + hash = "sha256-Q+uoaimJjn6MiO3jXGYyZ6cS0tqI06Azkq1QbNq2FN8="; + }; + + propagatedBuildInputs = [ + aiohttp + python-slugify + pytz + ]; + + checkInputs = [ + aresponses + pytestCheckHook + ]; + + pythonImportsCheck = [ "logi_circle" ]; + + meta = { + description = "A Python library to communicate with Logi Circle cameras"; + homepage = "https://github.com/evanjd/python-logi-circle"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ dotlambda ]; + }; +} diff --git a/pkgs/development/python-modules/lrcalc-python/default.nix b/pkgs/development/python-modules/lrcalc-python/default.nix new file mode 100644 index 00000000000..66c0ad46e5b --- /dev/null +++ b/pkgs/development/python-modules/lrcalc-python/default.nix @@ -0,0 +1,31 @@ +{ lib +, fetchPypi +, buildPythonPackage +, cython +, pkg-config +, lrcalc +}: + +buildPythonPackage rec { + pname = "lrcalc-python"; + version = "2.1"; + + src = fetchPypi { + inherit version; + pname = "lrcalc"; + sha256 = "e3a0509aeda487b412b391a52e817ca36b5c063a8305e09fd54d53259dd6aaa9"; + }; + + nativeBuildInputs = [ cython pkg-config ]; + + buildInputs = [ lrcalc ]; + + pythonImportsCheck = [ "lrcalc" ]; + + meta = with lib; { + description = "Littlewood-Richardson Calculator bindings"; + homepage = "https://sites.math.rutgers.edu/~asbuch/lrcalc/"; + maintainers = teams.sage.members; + license = licenses.gpl3; + }; +} diff --git a/pkgs/development/python-modules/lxmf/default.nix b/pkgs/development/python-modules/lxmf/default.nix index c6044844a62..8ae981cc1f1 100644 --- a/pkgs/development/python-modules/lxmf/default.nix +++ b/pkgs/development/python-modules/lxmf/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "lxmf"; - version = "0.1.5"; + version = "0.1.6"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "markqvist"; repo = "lxmf"; rev = "refs/tags/${version}"; - hash = "sha256-9JG/EnL7vW4P7QiT6Xa0GLfmu1JeM0dlFSp3VRE47NI="; + hash = "sha256-n7ZEXz+jFokjqQJf8feDE6wuN2kI3xB0z+guUhGse3o="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/m2r/default.nix b/pkgs/development/python-modules/m2r/default.nix index 35331c14b08..fd148382617 100644 --- a/pkgs/development/python-modules/m2r/default.nix +++ b/pkgs/development/python-modules/m2r/default.nix @@ -1,5 +1,11 @@ -{ lib, buildPythonPackage, fetchPypi, - mistune, docutils } : +{ lib +, buildPythonPackage +, fetchPypi +, docutils +, mistune +, pygments +}: + buildPythonPackage rec { pname = "m2r"; version = "0.2.1"; @@ -9,16 +15,19 @@ buildPythonPackage rec { sha256 = "bf90bad66cda1164b17e5ba4a037806d2443f2a4d5ddc9f6a5554a0322aaed99"; }; + postPatch = '' + substituteInPlace tests/test_cli.py \ + --replace "optional" "positional" + ''; + propagatedBuildInputs = [ mistune docutils ]; - # Some tests interfeere with each other (test.md and test.rst are - # deleted by some tests and not properly regenerated) - doCheck = false; + checkInputs = [ pygments ]; meta = with lib; { homepage = "https://github.com/miyakogi/m2r"; - description = "converts a markdown file including reST markups to a valid reST format"; + description = "Markdown to reStructuredText converter"; license = licenses.mit; - maintainers = [ ]; + maintainers = with maintainers; [ SuperSandro2000 ]; }; } diff --git a/pkgs/development/python-modules/mailchecker/default.nix b/pkgs/development/python-modules/mailchecker/default.nix index b62d4a67e75..ca5b0d3184e 100644 --- a/pkgs/development/python-modules/mailchecker/default.nix +++ b/pkgs/development/python-modules/mailchecker/default.nix @@ -6,14 +6,14 @@ buildPythonPackage rec { pname = "mailchecker"; - version = "4.1.16"; + version = "4.1.17"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-A+lh+BggMSJ/PIcYMfX3u/YlKVqhG5IxbrHPb1U6Ll4="; + hash = "sha256-NfgLI490/9YoHIXTVD890RTe+qP9rrwAFv8Xkc1IY5s="; }; # Module has no tests diff --git a/pkgs/development/python-modules/manuel/default.nix b/pkgs/development/python-modules/manuel/default.nix index 2f14ed863c3..27ec85a1f4d 100644 --- a/pkgs/development/python-modules/manuel/default.nix +++ b/pkgs/development/python-modules/manuel/default.nix @@ -8,12 +8,12 @@ buildPythonPackage rec { pname = "manuel"; - version = "1.10.1"; + version = "1.11.2"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "1bdzay7j70fly5fy6wbdi8fbrxjrrlxnxnw226rwry1c8a351rpy"; + sha256 = "sha256-nJt3WMQ66oa3VlW5InJCzOea96Wf7WwxSbBp9WIfzqc="; }; propagatedBuildInputs = [ six ]; diff --git a/pkgs/development/python-modules/markdown/default.nix b/pkgs/development/python-modules/markdown/default.nix index 2c91e46d13d..7207edb5815 100644 --- a/pkgs/development/python-modules/markdown/default.nix +++ b/pkgs/development/python-modules/markdown/default.nix @@ -9,14 +9,16 @@ buildPythonPackage rec { pname = "markdown"; - version = "3.3.6"; + version = "3.3.7"; disabled = pythonOlder "3.6"; + format = "setuptools"; + src = fetchPypi { pname = "Markdown"; inherit version; - sha256 = "sha256-dt+K4yKU7Dnc+JNAOCiC36Epdfh/RcPtHs2x6M78cAY="; + sha256 = "cbb516f16218e643d8e0a95b309f77eb118cb138d39a4f27851e6a63581db874"; }; propagatedBuildInputs = lib.optionals (pythonOlder "3.10") [ @@ -29,6 +31,8 @@ buildPythonPackage rec { ${python.interpreter} -m unittest discover ''; + pythonImportsCheck = [ "markdown" ]; + meta = with lib; { description = "A Python implementation of John Gruber's Markdown with Extension support"; homepage = "https://github.com/Python-Markdown/markdown"; diff --git a/pkgs/development/python-modules/marshmallow-oneofschema/default.nix b/pkgs/development/python-modules/marshmallow-oneofschema/default.nix index a4b15ce9a54..8fc946305bc 100644 --- a/pkgs/development/python-modules/marshmallow-oneofschema/default.nix +++ b/pkgs/development/python-modules/marshmallow-oneofschema/default.nix @@ -1,22 +1,43 @@ -{ lib, buildPythonPackage, fetchPypi, marshmallow, setuptools }: +{ lib +, buildPythonPackage +, fetchFromGitHub +, marshmallow +, pytestCheckHook +, pythonOlder +, setuptools +}: buildPythonPackage rec { pname = "marshmallow-oneofschema"; version = "3.0.1"; + format = "setuptools"; - src = fetchPypi { - inherit pname version; - sha256 = "62cd2099b29188c92493c2940ee79d1bf2f2619a71721664e5a98ec2faa58237"; + disabled = pythonOlder "3.6"; + + src = fetchFromGitHub { + owner = "marshmallow-code"; + repo = pname; + rev = version; + hash = "sha256-x0v8WkfjGkP2668QIQiewQViYFDIS2zBWMULcDThWas="; }; - propagatedBuildInputs = [ marshmallow setuptools ]; + propagatedBuildInputs = [ + marshmallow + setuptools + ]; + + checkInputs = [ + pytestCheckHook + ]; - pythonImportsCheck = [ "marshmallow_oneofschema" ]; + pythonImportsCheck = [ + "marshmallow_oneofschema" + ]; meta = with lib; { - homepage = "https://github.com/marshmallow-code/marshmallow-oneofschema"; description = "Marshmallow library extension that allows schema (de)multiplexing"; + homepage = "https://github.com/marshmallow-code/marshmallow-oneofschema"; license = licenses.mit; - maintainers = [ maintainers.ivan-tkatchev ]; + maintainers = with maintainers; [ ivan-tkatchev ]; }; } diff --git a/pkgs/development/python-modules/marshmallow/default.nix b/pkgs/development/python-modules/marshmallow/default.nix index a4f60d8202a..50e7e71cc9e 100644 --- a/pkgs/development/python-modules/marshmallow/default.nix +++ b/pkgs/development/python-modules/marshmallow/default.nix @@ -1,15 +1,17 @@ { lib , buildPythonPackage -, pythonOlder , fetchFromGitHub , pytestCheckHook +, pythonOlder , pytz , simplejson +, packaging }: buildPythonPackage rec { pname = "marshmallow"; - version = "3.13.0"; + version = "3.15.0"; + format = "setuptools"; disabled = pythonOlder "3.6"; @@ -17,9 +19,13 @@ buildPythonPackage rec { owner = "marshmallow-code"; repo = pname; rev = version; - sha256 = "sha256-tP/RKo2Hzxz2bT7ybRs9wGzq7TpsmzmOPi3BGuSLDA0="; + hash = "sha256-ZqMrMNfP/RKW2jQDNPgfhyeqmSc40pZbnrcXHbw2emc="; }; + propagatedBuildInputs = [ + packaging + ]; + checkInputs = [ pytestCheckHook pytz @@ -31,10 +37,7 @@ buildPythonPackage rec { ]; meta = with lib; { - description = '' - A lightweight library for converting complex objects to and from - simple Python datatypes. - ''; + description = "Library for converting complex objects to and from simple Python datatypes"; homepage = "https://github.com/marshmallow-code/marshmallow"; license = licenses.mit; maintainers = with maintainers; [ cript0nauta ]; diff --git a/pkgs/development/python-modules/mkdocs-material/default.nix b/pkgs/development/python-modules/mkdocs-material/default.nix index a0df1000892..feed177a9af 100644 --- a/pkgs/development/python-modules/mkdocs-material/default.nix +++ b/pkgs/development/python-modules/mkdocs-material/default.nix @@ -13,7 +13,7 @@ buildPythonApplication rec { pname = "mkdocs-material"; - version = "8.2.11"; + version = "8.2.15"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -22,7 +22,7 @@ buildPythonApplication rec { owner = "squidfunk"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-YAXdIA36QWwdQxTux6Sy/F0j8lprSO+5/VezFcsGQYg="; + hash = "sha256-6x3ENFPGmtRDMV6YRGlTLCYusmX49LrGBDwicg8sDB0="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/mkdocs/default.nix b/pkgs/development/python-modules/mkdocs/default.nix index 13604bc975a..2345ca93f94 100644 --- a/pkgs/development/python-modules/mkdocs/default.nix +++ b/pkgs/development/python-modules/mkdocs/default.nix @@ -16,7 +16,7 @@ , pyyaml-env-tag , watchdog # testing deps -, Babel +, babel , mock , pytestCheckHook }: @@ -47,7 +47,7 @@ buildPythonPackage rec { ]; checkInputs = [ - Babel + babel mock ]; diff --git a/pkgs/development/python-modules/motionblinds/default.nix b/pkgs/development/python-modules/motionblinds/default.nix index f3cf778fcba..e2a27b56cac 100644 --- a/pkgs/development/python-modules/motionblinds/default.nix +++ b/pkgs/development/python-modules/motionblinds/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "motionblinds"; - version = "0.6.5"; + version = "0.6.7"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "starkillerOG"; repo = "motion-blinds"; rev = "refs/tags/${version}"; - sha256 = "sha256-RAGsVHi/f+0gIzVomhC8h3JvoD4EEe6dK9PBi5daTgU="; + sha256 = "sha256-c6+kctEB4gwLGTgTA+sUA3v9ST4dn4RFPbyaXSgGvoQ="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/mox/default.nix b/pkgs/development/python-modules/mox/default.nix index 380dbe594a5..bd7fc589a7a 100644 --- a/pkgs/development/python-modules/mox/default.nix +++ b/pkgs/development/python-modules/mox/default.nix @@ -1,24 +1,41 @@ { lib , buildPythonPackage -, fetchurl +, fetchFromGitHub +, pytestCheckHook +, pythonOlder +, six }: buildPythonPackage rec { pname = "mox"; - version = "0.5.3"; + version = "0.7.8"; + format = "setuptools"; - src = fetchurl { - url = "http://pymox.googlecode.com/files/${pname}-${version}.tar.gz"; - sha256 = "4d18a4577d14da13d032be21cbdfceed302171c275b72adaa4c5997d589a5030"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "ivancrneto"; + repo = "pymox"; + rev = "v${version}"; + hash = "sha256-gODE9IGDk3WtO8iPOlp98fGp6Ih2laA3YlOHmq62m8Y="; }; - # error: invalid command 'test' - doCheck = false; + propagatedBuildInputs = [ + six + ]; + + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "mox" + ]; meta = with lib; { - homepage = "https://pymox.readthedocs.io/"; - description = "A mock object framework for Python"; + description = "Mock object framework"; + homepage = "https://github.com/ivancrneto/pymox"; license = licenses.asl20; + maintainers = with maintainers; [ ]; }; - } diff --git a/pkgs/development/python-modules/mt-940/default.nix b/pkgs/development/python-modules/mt-940/default.nix index e1699292944..3b63b02986a 100644 --- a/pkgs/development/python-modules/mt-940/default.nix +++ b/pkgs/development/python-modules/mt-940/default.nix @@ -3,12 +3,12 @@ }: buildPythonPackage rec { - version = "4.23.0"; + version = "4.26.0"; pname = "mt-940"; src = fetchPypi { inherit pname version; - sha256 = "9274bc8298b2d4b69cb3936bdcda315b50e45975789f519a237bdec58346b8d7"; + sha256 = "sha256-HL56TXZNkjVnap0XIhBT/xDA2N80NLCLpvuXkxXu6zE="; }; propagatedBuildInputs = lib.optional (!isPy3k) enum34; diff --git a/pkgs/development/python-modules/mypy-boto3-s3/default.nix b/pkgs/development/python-modules/mypy-boto3-s3/default.nix index 6fa1728deea..987aa20d2db 100644 --- a/pkgs/development/python-modules/mypy-boto3-s3/default.nix +++ b/pkgs/development/python-modules/mypy-boto3-s3/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "mypy-boto3-s3"; - version = "1.22.8"; + version = "1.23.0.post1"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-Br7HlymKuQUbI+iw90HWi1lSnEFwQbziBLokAHTzGEk="; + hash = "sha256-eF0ChMOqisXsMWLlKCAWGMrTUe4sGfZxWo5uc/ZKAQk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/napalm/default.nix b/pkgs/development/python-modules/napalm/default.nix index ef59a33a956..09d38875db8 100644 --- a/pkgs/development/python-modules/napalm/default.nix +++ b/pkgs/development/python-modules/napalm/default.nix @@ -1,23 +1,42 @@ -{ lib, buildPythonPackage, fetchFromGitHub, callPackage, setuptools, cffi +{ lib, buildPythonPackage, fetchFromGitHub, fetchpatch, setuptools, cffi , paramiko, requests, future, textfsm, jinja2, netaddr, pyyaml, pyeapi, netmiko , junos-eznc, ciscoconfparse, scp, lxml, ncclient, pytestCheckHook, ddt, mock -, pythonOlder, pythonAtLeast }: +, pythonOlder }: buildPythonPackage rec { pname = "napalm"; - version = "3.3.1"; + version = "3.4.1"; format = "setuptools"; - disabled = pythonOlder "3.6" || pythonAtLeast "3.9"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "napalm-automation"; repo = "napalm"; rev = version; - sha256 = "15h1h1a3avv48i14x96b8v7zkhmwg7dnzxycxr18f9530j237rq6"; + sha256 = "sha256-TNWRJtc6+VS6wgJGGvCPDoFQmOKQAyXdjFQo9bPJ2F8="; }; + patches = [ + # netmiko 4.0.0 support + (fetchpatch{ + url = "https://github.com/napalm-automation/napalm/commit/4b8cc85db3236099a04f742cf71773e74d9dd70e.patch"; + excludes = [ "requirements.txt" ]; + sha256 = "sha256-DBKp+wiKd+/j2xAqaQL3UCcGQd6wnWcNTsNXBBt9c98="; + }) + (fetchpatch{ + url = "https://github.com/napalm-automation/napalm/commit/4a8b5b1823335dd79aa5269c038a1f08ecd35cdd.patch"; + sha256 = "sha256-uiou/rzmnFf4wAvXwmUsGJx99GeHWKJB2JrMM1kLakM="; + }) + ]; + + postPatch = '' + substituteInPlace requirements.txt \ + --replace "netmiko>=3.3.0,<4.0.0" "netmiko" + ''; + buildInputs = [ setuptools ]; + propagatedBuildInputs = [ cffi paramiko diff --git a/pkgs/development/python-modules/napalm/hp-procurve.nix b/pkgs/development/python-modules/napalm/hp-procurve.nix index 774fdd2299c..f6ebfa980e6 100644 --- a/pkgs/development/python-modules/napalm/hp-procurve.nix +++ b/pkgs/development/python-modules/napalm/hp-procurve.nix @@ -30,12 +30,14 @@ buildPythonPackage rec { "test_method_signatures" # AttributeError: 'PatchedProcurveDriver' object has no attribute 'platform' "test_get_config_filtered" + # AssertionError + "test_get_interfaces" ]; meta = with lib; { description = "HP ProCurve Driver for NAPALM automation frontend"; - homepage = - "https://github.com/napalm-automation-community/napalm-hp-procurve"; + homepage = "https://github.com/napalm-automation-community/napalm-hp-procurve"; license = licenses.asl20; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/nats-py/default.nix b/pkgs/development/python-modules/nats-py/default.nix index 3cc92514bd6..195fb37d333 100644 --- a/pkgs/development/python-modules/nats-py/default.nix +++ b/pkgs/development/python-modules/nats-py/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "nats-py"; - version = "2.1.0"; + version = "2.1.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "nats-io"; repo = "nats.py"; rev = "refs/tags/v${version}"; - hash = "sha256-OwxTcjHB1YLijEtTA+QFjEmihqXsiitIcCtdl/3uipI="; + hash = "sha256-i197ZePxngAhGh7xzaJoo7m8el+7t7yJrvhO2CTmajU="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/netmiko/default.nix b/pkgs/development/python-modules/netmiko/default.nix index 3081b5a6b7c..482c298a90e 100644 --- a/pkgs/development/python-modules/netmiko/default.nix +++ b/pkgs/development/python-modules/netmiko/default.nix @@ -3,16 +3,15 @@ buildPythonPackage rec { pname = "netmiko"; - version = "4.0.0"; + version = "4.1.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-fVhBkiO1JpqMIFl32xlwSjeCd7aObocXPAr069fKdmc="; + sha256 = "sha256-VwUZdHr82WsEprB7rk5d62AwaCxzngftDgjeBZW4OWQ="; }; buildInputs = [ setuptools ]; - propagatedBuildInputs = - [ paramiko scp tenacity textfsm ntc-templates pyserial ]; + propagatedBuildInputs = [ paramiko scp tenacity pyyaml textfsm ntc-templates pyserial ]; # tests require closed-source pyats and genie packages doCheck = false; diff --git a/pkgs/development/python-modules/nomadnet/default.nix b/pkgs/development/python-modules/nomadnet/default.nix index 4505c33a696..ef7083980af 100644 --- a/pkgs/development/python-modules/nomadnet/default.nix +++ b/pkgs/development/python-modules/nomadnet/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "nomadnet"; - version = "0.1.7"; + version = "0.1.8"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "markqvist"; repo = "NomadNet"; rev = version; - hash = "sha256-WJpcV6+cnK1525lbYvkWqrGasioph72nuoNV4oWxVK0="; + hash = "sha256-gqUCE35RPt7k0RAoZGJS1srB5K4v6gJkbTKQs8Lajm8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/numpy-stl/default.nix b/pkgs/development/python-modules/numpy-stl/default.nix index 312170ee36c..c4877e839cd 100644 --- a/pkgs/development/python-modules/numpy-stl/default.nix +++ b/pkgs/development/python-modules/numpy-stl/default.nix @@ -11,11 +11,11 @@ buildPythonPackage rec { pname = "numpy-stl"; - version = "2.16.3"; + version = "2.17.1"; src = fetchPypi { inherit pname version; - sha256 = "95890627001efb2cb8d17418730cdc1bdd64b8dbb9862b01a8e0359d79fe863e"; + sha256 = "sha256-NskgGS9EXdV/CRpjYpvdpaknTUdROjOsLvrRJzc5S3o="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/ocrmypdf/default.nix b/pkgs/development/python-modules/ocrmypdf/default.nix index 6700b88479d..405748599ab 100644 --- a/pkgs/development/python-modules/ocrmypdf/default.nix +++ b/pkgs/development/python-modules/ocrmypdf/default.nix @@ -27,7 +27,7 @@ buildPythonPackage rec { pname = "ocrmypdf"; - version = "13.4.3"; + version = "13.4.4"; src = fetchFromGitHub { owner = "jbarlow83"; @@ -39,7 +39,7 @@ buildPythonPackage rec { extraPostFetch = '' rm "$out/.git_archival.txt" ''; - hash = "sha256-kriT3NV9Lj44WjOeK6+pILjfRMt9QMcKU57si394xxI="; + hash = "sha256-uFKnohUxh17h6u0vwVB7EaTEh5NRowP8a6za63Ehodk="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/openstacksdk/default.nix b/pkgs/development/python-modules/openstacksdk/default.nix index 976088baad7..98906606fa5 100644 --- a/pkgs/development/python-modules/openstacksdk/default.nix +++ b/pkgs/development/python-modules/openstacksdk/default.nix @@ -12,17 +12,21 @@ , netifaces , os-service-types , pbr +, pythonOlder , pyyaml , requestsexceptions }: buildPythonPackage rec { pname = "openstacksdk"; - version = "0.61.0"; + version = "0.99.0"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "3eed308871230f0c53a8f58b6c5a358b184080c6b2c6bc69ab088eea057aa127"; + hash = "sha256-P3PDzCgInpOzQut/NIsoX1pl/+UFiYvhXbJQx1u4Ves="; }; propagatedBuildInputs = [ @@ -47,7 +51,9 @@ buildPythonPackage rec { tests = callPackage ./tests.nix { }; }; - pythonImportsCheck = [ "openstack" ]; + pythonImportsCheck = [ + "openstack" + ]; meta = with lib; { description = "An SDK for building applications to work with OpenStack"; diff --git a/pkgs/development/python-modules/osmpythontools/default.nix b/pkgs/development/python-modules/osmpythontools/default.nix index 23755583470..53c4dc1457e 100644 --- a/pkgs/development/python-modules/osmpythontools/default.nix +++ b/pkgs/development/python-modules/osmpythontools/default.nix @@ -13,13 +13,13 @@ buildPythonPackage rec { pname = "osmpythontools"; - version = "0.3.3"; + version = "0.3.4"; src = fetchFromGitHub { owner = "mocnik-science"; repo = "osm-python-tools"; - rev = "v.${version}"; - sha256 = "sha256-335zo/kOX4OpUwHas2aaPibY6zNmDaaHJpolbTQWqKk="; + rev = "v${version}"; + sha256 = "sha256-7r42b/B9h7cMgM+wFS0Fink/3WjUNvz+PwLn3C5hawc="; }; propagatedBuildInputs = [ @@ -54,6 +54,7 @@ buildPythonPackage rec { ''; homepage = "https://github.com/mocnik-science/osm-python-tools"; license = licenses.gpl3Only; + changelog = "https://raw.githubusercontent.com/mocnik-science/osm-python-tools/v${version}/version-history.md"; maintainers = with maintainers; [ das-g ]; }; } diff --git a/pkgs/development/python-modules/pandas/default.nix b/pkgs/development/python-modules/pandas/default.nix index 5188ce63795..38173eb4fe0 100644 --- a/pkgs/development/python-modules/pandas/default.nix +++ b/pkgs/development/python-modules/pandas/default.nix @@ -59,16 +59,6 @@ buildPythonPackage rec { # https://github.com/NixOS/nixpkgs/issues/39687 hardeningDisable = lib.optional stdenv.cc.isClang "strictoverflow"; - # For OSX, we need to add a dependency on libcxx, which provides - # `complex.h` and other libraries that pandas depends on to build. - postPatch = lib.optionalString stdenv.isDarwin '' - cpp_sdk="${lib.getDev libcxx}/include/c++/v1"; - echo "Adding $cpp_sdk to the setup.py common_include variable" - substituteInPlace setup.py \ - --replace "['pandas/src/klib', 'pandas/src']" \ - "['pandas/src/klib', 'pandas/src', '$cpp_sdk']" - ''; - doCheck = !stdenv.isAarch32 && !stdenv.isAarch64; # upstream doesn't test this architecture # don't max out build cores, it breaks tests diff --git a/pkgs/development/python-modules/pathos/default.nix b/pkgs/development/python-modules/pathos/default.nix index fd6bd238d1e..144d5aad60c 100644 --- a/pkgs/development/python-modules/pathos/default.nix +++ b/pkgs/development/python-modules/pathos/default.nix @@ -1,30 +1,45 @@ { lib , buildPythonPackage -, fetchPypi +, fetchFromGitHub , dill , pox , ppft , multiprocess +, pythonOlder }: buildPythonPackage rec { pname = "pathos"; - version = "0.2.5"; + version = "0.2.8"; + format = "setuptools"; - src = fetchPypi { - inherit pname version; - sha256 = "21ae2cb1d5a76dcf57d5fe93ae8719c7339f467e246163650c08ccf35b87c846"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "uqfoundation"; + repo = pname; + rev = "${pname}-${version}"; + sha256 = "sha256-71hMaG+3FbWMtGqwcDOZ8uit0DsHEoc9H2GXfX7TeoM="; }; - propagatedBuildInputs = [ dill pox ppft multiprocess ]; + propagatedBuildInputs = [ + dill + pox + ppft + multiprocess + ]; # Require network doCheck = false; + pythonImportsCheck = [ + "pathos" + ]; + meta = with lib; { description = "Parallel graph management and execution in heterogeneous computing"; - homepage = "https://github.com/uqfoundation/pathos/"; + homepage = "https://pathos.readthedocs.io/"; license = licenses.bsd3; + maintainers = with maintainers; [ ]; }; - } diff --git a/pkgs/development/python-modules/peaqevcore/default.nix b/pkgs/development/python-modules/peaqevcore/default.nix index 4b11263017d..e8d18f752fe 100644 --- a/pkgs/development/python-modules/peaqevcore/default.nix +++ b/pkgs/development/python-modules/peaqevcore/default.nix @@ -6,14 +6,14 @@ buildPythonPackage rec { pname = "peaqevcore"; - version = "0.0.23"; + version = "0.1.1"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-z59TJ+P7WNMcTyevi4etWUFUnBJXAVhDOnO4GXjjuR0="; + hash = "sha256-jGKB2LYp2RGy+E76ZvRdOzPdT+7fL4ZTEilHDiXbAMw="; }; postPatch = '' diff --git a/pkgs/development/python-modules/periodictable/default.nix b/pkgs/development/python-modules/periodictable/default.nix index 7c08468c03f..89a293b75f4 100644 --- a/pkgs/development/python-modules/periodictable/default.nix +++ b/pkgs/development/python-modules/periodictable/default.nix @@ -1,22 +1,41 @@ -{lib, fetchPypi, buildPythonPackage, numpy, pyparsing, pytest-cov, pytestCheckHook }: +{ lib +, fetchPypi +, buildPythonPackage +, numpy +, pyparsing +, pytestCheckHook +, pythonOlder +}: buildPythonPackage rec { pname = "periodictable"; - version = "1.6.0"; + version = "1.6.1"; + format = "setuptools"; - propagatedBuildInputs = [numpy pyparsing]; + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "52e925220005c20e97601e7b04ad6cebc271680947ab9adcbb1a796ddbaa0f23"; + hash = "sha256-fFAcn3PXex+yjLUehbKEKcLESpnOPRJ0iUVkxy1xJgM="; }; - checkInputs = [ pytest-cov pytestCheckHook ]; + propagatedBuildInputs = [ + numpy + pyparsing + ]; - meta = { - homepage = "https://www.reflectometry.org/danse/software.html"; - description = "an extensible periodic table of the elements prepopulated with data important to neutron and x-ray scattering experiments"; - license = lib.licenses.publicDomain; - maintainers = with lib.maintainers; [ rprospero ]; + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "periodictable" + ]; + + meta = with lib; { + description = "Extensible periodic table of the elements"; + homepage = "https://github.com/pkienzle/periodictable"; + license = licenses.publicDomain; + maintainers = with maintainers; [ rprospero ]; }; } diff --git a/pkgs/development/python-modules/pex/default.nix b/pkgs/development/python-modules/pex/default.nix index 2098a1d10cf..6fba5f820d9 100644 --- a/pkgs/development/python-modules/pex/default.nix +++ b/pkgs/development/python-modules/pex/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "pex"; - version = "2.1.85"; + version = "2.1.89"; format = "flit"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-ABRidGtJikMIHItT21MJdiIqpA26IUN1aFMNyRVKyDA="; + hash = "sha256-7/rJe/A6CbkminjFuL+8eIdj0kYzNMKynWX0umAMRAA="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pg8000/default.nix b/pkgs/development/python-modules/pg8000/default.nix index c871a7bccb8..b3ac256e0bb 100644 --- a/pkgs/development/python-modules/pg8000/default.nix +++ b/pkgs/development/python-modules/pg8000/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "pg8000"; - version = "1.26.1"; + version = "1.28.0"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-zNK2/hkK3ddMCTpivgcwuemfPqA6oO96uV7Rt/9p0lc="; + sha256 = "sha256-Q1E949TjeOc6xEKpOQa6qdNWJFqmeqf2FgXFbjmn9ZE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/phik/default.nix b/pkgs/development/python-modules/phik/default.nix index 2919fb5c733..2e0dc2b8b26 100644 --- a/pkgs/development/python-modules/phik/default.nix +++ b/pkgs/development/python-modules/phik/default.nix @@ -15,12 +15,14 @@ , ninja , numba , pybind11 +, scikit-build }: buildPythonPackage rec { pname = "phik"; version = "0.12.2"; disabled = !isPy3k; + format = "pyproject"; src = fetchPypi { inherit pname version; @@ -50,10 +52,13 @@ buildPythonPackage rec { nativeBuildInputs = [ cmake ninja + scikit-build ]; + pythonImportCheck = [ "phik" ]; + postInstall = '' - rm -r $out/bin + rm -r $out/bin ''; meta = with lib; { diff --git a/pkgs/development/python-modules/pikepdf/default.nix b/pkgs/development/python-modules/pikepdf/default.nix index 0b72031a4bc..b86dabee9f2 100644 --- a/pkgs/development/python-modules/pikepdf/default.nix +++ b/pkgs/development/python-modules/pikepdf/default.nix @@ -25,7 +25,7 @@ buildPythonPackage rec { pname = "pikepdf"; - version = "5.1.2"; + version = "5.1.3"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -40,7 +40,7 @@ buildPythonPackage rec { extraPostFetch = '' rm "$out/.git_archival.txt" ''; - hash = "sha256-VR2/+XCQb62FdkGZBxP2XTqatdFYZO1ngb8gvoJEvzs="; + hash = "sha256-jkAwc1bQ1jRDf/qY+xAjiLXXO98qKjyX+J7Lu4tYWoI="; }; patches = [ diff --git a/pkgs/development/python-modules/pip-api/default.nix b/pkgs/development/python-modules/pip-api/default.nix new file mode 100644 index 00000000000..5e4412dcf85 --- /dev/null +++ b/pkgs/development/python-modules/pip-api/default.nix @@ -0,0 +1,52 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pip +, pretend +, pytestCheckHook +, pythonOlder +, virtualenv +}: + +buildPythonPackage rec { + pname = "pip-api"; + version = "0.0.29"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; + + src = fetchPypi { + inherit pname version; + hash = "sha256-9wFYTrHD4BAhyEb4nWKauTc7ZiTwYmdXd0rVT8TClXE="; + }; + + propagatedBuildInputs = [ + pip + ]; + + checkInputs = [ + pretend + pytestCheckHook + virtualenv + ]; + + pythonImportsCheck = [ + "pip_api" + ]; + + disabledTests = [ + "test_hash" + "test_hash_default_algorithm_is_256" + "test_installed_distributions" + "test_invoke_install" + "test_invoke_uninstall" + "test_isolation" + ]; + + meta = with lib; { + description = "Importable pip API"; + homepage = "https://github.com/di/pip-api"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/pip-tools/default.nix b/pkgs/development/python-modules/pip-tools/default.nix index d0569652812..2b079c8f00e 100644 --- a/pkgs/development/python-modules/pip-tools/default.nix +++ b/pkgs/development/python-modules/pip-tools/default.nix @@ -13,13 +13,13 @@ buildPythonPackage rec { pname = "pip-tools"; - version = "6.6.0"; + version = "6.6.1"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-mKokAERAocBInXGlZ6Tor98jx3gr/0g9EhmIHnMC3oM="; + sha256 = "sha256-Y04+jUcHJXwAQxPRap1sFMHOlNPA+h+Tw40mRAHy5PI="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/pkgconfig/default.nix b/pkgs/development/python-modules/pkgconfig/default.nix index 105beaccb9b..6721390d7ab 100644 --- a/pkgs/development/python-modules/pkgconfig/default.nix +++ b/pkgs/development/python-modules/pkgconfig/default.nix @@ -26,12 +26,9 @@ buildPythonPackage rec { sha256 = "sha256-uuLUGRNLCR3NS9g6OPCI+qG7tPWsLhI3OE5WmSI3vm8="; }; - patches = [ ./executable.patch ]; - postPatch = '' - rm pkgconfig/pkgconfig.py.orig substituteInPlace pkgconfig/pkgconfig.py \ - --replace 'PKG_CONFIG_EXE = "pkg-config"' 'PKG_CONFIG_EXE = "${pkg-config}/bin/${pkg-config.targetPrefix}pkg-config"' + --replace "pkg_config_exe = os.environ.get('PKG_CONFIG', None) or 'pkg-config'" "pkg_config_exe = '${pkg-config}/bin/${pkg-config.targetPrefix}pkg-config'" # those pc files are missing and pkg-config validates that they exist substituteInPlace data/fake-openssl.pc \ @@ -40,8 +37,6 @@ buildPythonPackage rec { nativeBuildInputs = [ poetry-core ]; - propagatedNativeBuildInputs = [ pkg-config ]; - checkInputs = [ pytestCheckHook ]; pythonImportsCheck = [ "pkgconfig" ]; diff --git a/pkgs/development/python-modules/pkgconfig/executable.patch b/pkgs/development/python-modules/pkgconfig/executable.patch deleted file mode 100644 index 79fca7a44f1..00000000000 --- a/pkgs/development/python-modules/pkgconfig/executable.patch +++ /dev/null @@ -1,38 +0,0 @@ -commit d8e0bac0c0d831510683939ec7a7b5bd72192423 -Author: Frederik Rietdijk <fridh@fridh.nl> -Date: Sat Jan 5 11:38:28 2019 +0100 - - Have a top-level attribute for the executable - -diff --git a/pkgconfig/pkgconfig.py b/pkgconfig/pkgconfig.py -index 3deb97f..e7c5561 100644 ---- a/pkgconfig/pkgconfig.py -+++ b/pkgconfig/pkgconfig.py -@@ -30,6 +30,9 @@ from functools import wraps - from subprocess import call, PIPE, Popen - - -+PKG_CONFIG_EXE = "pkg-config" -+ -+ - def _compare_versions(v1, v2): - """ - Compare two version strings and return -1, 0 or 1 depending on the equality -@@ -65,7 +68,7 @@ def _convert_error(func): - - @_convert_error - def _query(package, *options): -- pkg_config_exe = os.environ.get('PKG_CONFIG', None) or 'pkg-config' -+ pkg_config_exe = os.environ.get('PKG_CONFIG', None) or PKG_CONFIG_EXE - cmd = '{0} {1} {2}'.format(pkg_config_exe, ' '.join(options), package) - proc = Popen(shlex.split(cmd), stdout=PIPE, stderr=PIPE) - out, err = proc.communicate() -@@ -84,7 +87,7 @@ def exists(package): - - If ``pkg-config`` not on path, raises ``EnvironmentError``. - """ -- pkg_config_exe = os.environ.get('PKG_CONFIG', None) or 'pkg-config' -+ pkg_config_exe = os.environ.get('PKG_CONFIG', None) or PKG_CONFIG_EXE - cmd = '{0} --exists {1}'.format(pkg_config_exe, package).split() - return call(cmd) == 0 - diff --git a/pkgs/development/python-modules/plaid-python/default.nix b/pkgs/development/python-modules/plaid-python/default.nix index efcdf3fd3a3..3b68fef4172 100644 --- a/pkgs/development/python-modules/plaid-python/default.nix +++ b/pkgs/development/python-modules/plaid-python/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "plaid-python"; - version = "9.3.0"; + version = "9.4.0"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-7H6fpJl192L8MEWrQW89Fa/BTZ2GZXjDRcy0yc17hDI="; + hash = "sha256-Md4vzAirCm5fjcTAeiLIQwH0MAP47r2AT8O5yigGqv8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/platformdirs/default.nix b/pkgs/development/python-modules/platformdirs/default.nix index 584d9361fb7..e04b40bc1e4 100644 --- a/pkgs/development/python-modules/platformdirs/default.nix +++ b/pkgs/development/python-modules/platformdirs/default.nix @@ -2,17 +2,17 @@ , appdirs , buildPythonPackage , fetchFromGitHub -, platformdirs , pytest-mock , pytestCheckHook , pythonOlder -, setuptools-scm +, hatchling +, hatch-vcs }: buildPythonPackage rec { pname = "platformdirs"; - version = "2.5.1"; - format = "setuptools"; + version = "2.5.2"; + format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,13 +20,14 @@ buildPythonPackage rec { owner = pname; repo = pname; rev = version; - sha256 = "sha256-z6WIwTWLlc/chNRxt3dqqa/IxYj1BBTcQ6OcfliHrvA="; + sha256 = "sha256-c7gGgqOUVYA6wYU4+nQsYYw4Gn+DpMoIq2nP8nEdPcg="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; nativeBuildInputs = [ - setuptools-scm + hatchling + hatch-vcs ]; checkInputs = [ diff --git a/pkgs/development/python-modules/plugwise/default.nix b/pkgs/development/python-modules/plugwise/default.nix index b2c8bef9d49..ef88131bea6 100644 --- a/pkgs/development/python-modules/plugwise/default.nix +++ b/pkgs/development/python-modules/plugwise/default.nix @@ -20,7 +20,7 @@ buildPythonPackage rec { pname = "plugwise"; - version = "0.18.2"; + version = "0.18.4"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -29,7 +29,7 @@ buildPythonPackage rec { owner = pname; repo = "python-plugwise"; rev = "refs/tags/v${version}"; - sha256 = "sha256-l97GF5dZlwps2mhw84A+8IBmTmvnaJ/5MeWYdeAu4Zw="; + sha256 = "sha256-a4mbkwjdLOnoxe4Cj43IXGALqbTKqinoJAiPWfc79/8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/poetry-dynamic-versioning/default.nix b/pkgs/development/python-modules/poetry-dynamic-versioning/default.nix index bdc484fd1bb..7c0ba362f52 100644 --- a/pkgs/development/python-modules/poetry-dynamic-versioning/default.nix +++ b/pkgs/development/python-modules/poetry-dynamic-versioning/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "poetry-dynamic-versioning"; - version = "0.16.0"; + version = "0.17.1"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "mtkennerly"; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-dLtZSm10OYWLRK4eRo83RczW0zBVAUF0HQXLQbeDJCk="; + hash = "sha256-okOooz0Z2d3EBm+lp68il2tXmbG5nRmDQmUdOXaHjpc="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pox/default.nix b/pkgs/development/python-modules/pox/default.nix index 24591824e07..3659c7e5497 100644 --- a/pkgs/development/python-modules/pox/default.nix +++ b/pkgs/development/python-modules/pox/default.nix @@ -1,21 +1,32 @@ { lib , buildPythonPackage , fetchPypi +, pythonOlder }: buildPythonPackage rec { pname = "pox"; - version = "0.2.7"; + version = "0.3.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "06afe1a4a1dbf8b47f7ad5a3c1d8ada9104c64933a1da11338269a2bd8642778"; + sha256 = "sha256-y7DArNZQwP+2IJmdphHpOq5RBcRqCExM6vL3BO1wjB4="; }; + # Test sare failing the sandbox + doCheck = false; + + pythonImportsCheck = [ + "pox" + ]; + meta = with lib; { description = "Utilities for filesystem exploration and automated builds"; + homepage = "https://pox.readthedocs.io/"; license = licenses.bsd3; - homepage = "https://github.com/uqfoundation/pox/"; + maintainers = with maintainers; [ ]; }; - } diff --git a/pkgs/development/python-modules/ppft/default.nix b/pkgs/development/python-modules/ppft/default.nix index ba23948fdb8..15597188135 100644 --- a/pkgs/development/python-modules/ppft/default.nix +++ b/pkgs/development/python-modules/ppft/default.nix @@ -1,20 +1,27 @@ -{ lib, stdenv +{ lib +, stdenv , buildPythonPackage , fetchPypi , python +, pythonOlder , six }: buildPythonPackage rec { pname = "ppft"; - version = "1.6.6.1"; + version = "1.7.6.5"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "9e2173042edd5cc9c7bee0d7731873f17fcdce0e42e4b7ab68857d0de7b631fc"; + sha256 = "sha256-R+DauHpRbAuZks1bDJCDSOTH2WQwTRBrIn+tKK4DIZ4="; }; - propagatedBuildInputs = [ six ]; + propagatedBuildInputs = [ + six + ]; # darwin seems to hang doCheck = !stdenv.isDarwin; @@ -23,10 +30,14 @@ buildPythonPackage rec { ${python.interpreter} -m ppft.tests ''; + pythonImportsCheck = [ + "ppft" + ]; + meta = with lib; { - description = "Distributed and parallel python"; - homepage = "https://github.com/uqfoundation"; + description = "Distributed and parallel Python"; + homepage = "https://ppft.readthedocs.io/"; license = licenses.bsd3; + maintainers = with maintainers; [ ]; }; - } diff --git a/pkgs/development/python-modules/pretend/default.nix b/pkgs/development/python-modules/pretend/default.nix index 87e0e6613b1..0134b0dc36a 100644 --- a/pkgs/development/python-modules/pretend/default.nix +++ b/pkgs/development/python-modules/pretend/default.nix @@ -1,19 +1,36 @@ -{ lib, buildPythonPackage, fetchPypi }: +{ lib +, buildPythonPackage +, fetchFromGitHub +, pytestCheckHook +, pythonOlder +}: buildPythonPackage rec { pname = "pretend"; version = "1.0.9"; + format = "setuptools"; - src = fetchPypi { - inherit pname version; - sha256 = "c90eb810cde8ebb06dafcb8796f9a95228ce796531bc806e794c2f4649aa1b10"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "alex"; + repo = pname; + rev = "v${version}"; + hash = "sha256-OqMfeIMFNBBLq6ejR3uOCIHZ9aA4zew7iefVlAsy1JQ="; }; - # No tests in archive - doCheck = false; + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "pretend" + ]; meta = with lib; { + description = "Module for stubbing"; homepage = "https://github.com/alex/pretend"; license = licenses.bsd3; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/proxmoxer/default.nix b/pkgs/development/python-modules/proxmoxer/default.nix index 33b233bd609..9684fe84ba0 100644 --- a/pkgs/development/python-modules/proxmoxer/default.nix +++ b/pkgs/development/python-modules/proxmoxer/default.nix @@ -11,14 +11,16 @@ buildPythonPackage rec { pname = "proxmoxer"; - version = "1.3.0"; - disabled = pythonOlder "3.6"; + version = "1.3.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = pname; repo = pname; - rev = version; - sha256 = "sha256-3EpId20WVVjXA/wxwy1peyHPcXdiT3fprABkcNBpZtE="; + rev = "refs/tags/${version}"; + hash = "sha256-FY0JLDBoKmh85VoKh3UuPPRbMAIjs3l/fZM4owniH1c="; }; propagatedBuildInputs = [ @@ -32,9 +34,14 @@ buildPythonPackage rec { pytestCheckHook ]; - # Tests require openssh_wrapper which is outdated and not available - pytestFlagsArray = [ "tests/paramiko_tests.py" ]; - pythonImportsCheck = [ "proxmoxer" ]; + pytestFlagsArray = [ + # Tests require openssh_wrapper which is outdated and not available + "tests/paramiko_tests.py" + ]; + + pythonImportsCheck = [ + "proxmoxer" + ]; meta = with lib; { description = "Python wrapper for Proxmox API v2"; diff --git a/pkgs/development/python-modules/pubnub/default.nix b/pkgs/development/python-modules/pubnub/default.nix index 7ac259aa4ab..0f4cb78e8fe 100644 --- a/pkgs/development/python-modules/pubnub/default.nix +++ b/pkgs/development/python-modules/pubnub/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "pubnub"; - version = "6.3.1"; + version = "6.3.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = pname; repo = "python"; rev = "refs/tags/v${version}"; - hash = "sha256-HeblPnHSGO12+2hNvwRde84hvjdkxEJU6Eygxs36UBE="; + hash = "sha256-xSPsBcbttADgaetkTIFSYSoEl3lWfdhechpkzQEmcag="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/puremagic/default.nix b/pkgs/development/python-modules/puremagic/default.nix index fbc1bd69370..aac505dd8f3 100644 --- a/pkgs/development/python-modules/puremagic/default.nix +++ b/pkgs/development/python-modules/puremagic/default.nix @@ -6,14 +6,14 @@ buildPythonPackage rec { pname = "puremagic"; - version = "1.13"; + version = "1.14"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-yaHw/pOqWLUtYoM3l/JB0JToLXdi04n0BSccRdbCVDw="; + sha256 = "sha256-PV3ybMfsmuu/hCoJEVovqF3FnqZBT6VoVyxEd115bLw="; }; # test data not included on pypi diff --git a/pkgs/development/python-modules/py-deprecate/default.nix b/pkgs/development/python-modules/py-deprecate/default.nix new file mode 100644 index 00000000000..ff921789bbf --- /dev/null +++ b/pkgs/development/python-modules/py-deprecate/default.nix @@ -0,0 +1,39 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, pytestCheckHook +, scikit-learn +, pytorch +}: + +let + pname = "py-deprecate"; + version = "0.3.2"; +in +buildPythonPackage { + inherit pname version; + + src = fetchFromGitHub { + owner = "Borda"; + repo = "pyDeprecate"; + rev = "v${version}"; + hash = "sha256-84RmQvLxwtLPQk3hX7Q6eeJeejhrO3t+mc95W1E85Fg="; + }; + + checkInputs = [ + pytestCheckHook + scikit-learn + ]; + + pythonImportsCheck = [ "deprecate" ]; + + meta = with lib; { + description = "A module for marking deprecated functions or classes and re-routing to the new successors' instance. Used by torchmetrics"; + homepage = "https://borda.github.io/pyDeprecate/"; + license = licenses.asl20; + maintainers = with maintainers; [ + SomeoneSerge + ]; + }; +} + diff --git a/pkgs/development/python-modules/pyTelegramBotAPI/default.nix b/pkgs/development/python-modules/pyTelegramBotAPI/default.nix index 36f25fce9d1..13678edc865 100644 --- a/pkgs/development/python-modules/pyTelegramBotAPI/default.nix +++ b/pkgs/development/python-modules/pyTelegramBotAPI/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "pyTelegramBotAPI"; - version = "4.5.0"; + version = "4.5.1"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-Jonbb26MbK/LKztFkB7IlaHQm98DPYn4lYK4ikDPpaE="; + hash = "sha256-ClzdkvH1uz1qh/q3prfn8n0eosY3y3mUscbb4EKbmJQ="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyautogui/default.nix b/pkgs/development/python-modules/pyautogui/default.nix index 08ab81ba93d..a7b35bc5710 100644 --- a/pkgs/development/python-modules/pyautogui/default.nix +++ b/pkgs/development/python-modules/pyautogui/default.nix @@ -1,14 +1,10 @@ { lib , buildPythonPackage , fetchFromGitHub -, python3Packages -, pkgs -, fetchzip , mouseinfo , pygetwindow , pymsgbox , pyperclip -, pyrect , pyscreeze , pytweening , tkinter diff --git a/pkgs/development/python-modules/pycep-parser/default.nix b/pkgs/development/python-modules/pycep-parser/default.nix index 3e8104ea33b..417b2b1ed32 100644 --- a/pkgs/development/python-modules/pycep-parser/default.nix +++ b/pkgs/development/python-modules/pycep-parser/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "pycep-parser"; - version = "0.3.4"; + version = "0.3.6"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -20,8 +20,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "gruebel"; repo = "pycep"; - rev = version; - hash = "sha256-o2sYPvZVevDqZV8EtKWTL2zHHzX2kmTZ4iVHsUhFv7M="; + rev = "refs/tags/${version}"; + hash = "sha256-v8GJHwkY4FFmqPzEfFdvYhxj9G/H74KkhyM40K+mQ3A="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pycfmodel/default.nix b/pkgs/development/python-modules/pycfmodel/default.nix index 9aa41214bfc..87f3798410a 100644 --- a/pkgs/development/python-modules/pycfmodel/default.nix +++ b/pkgs/development/python-modules/pycfmodel/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "pycfmodel"; - version = "0.19.1"; + version = "0.20.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "Skyscanner"; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-k059AfI3dTPMLAOColmTG4kz0z2bLO1oi8Bg0QeLork="; + hash = "sha256-c6RbglmG/A1fVOLmJLRsyMy9EgEIzpXnIe9Co/OLMSg="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyclipper/default.nix b/pkgs/development/python-modules/pyclipper/default.nix index 0dbcdfbc260..a6e023366ac 100644 --- a/pkgs/development/python-modules/pyclipper/default.nix +++ b/pkgs/development/python-modules/pyclipper/default.nix @@ -1,34 +1,45 @@ { lib -, fetchPypi +, fetchFromGitHub , buildPythonPackage , setuptools-scm , cython , pytestCheckHook -, unittest2 +, pythonOlder }: buildPythonPackage rec { pname = "pyclipper"; - version = "1.3.0"; + version = "1.3.0.post2"; + format = "setuptools"; - src = fetchPypi { - inherit pname version; - extension = "zip"; - sha256 = "48a1b5c585aea10e5b9c0b82d6abe2642fafd9ef158b9921852bc4af815ca20c"; + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "fonttools"; + repo = pname; + rev = version; + hash = "sha256-AFdfzM1zdhmfh3Uu5fFVOMWStbuHxKS3FovZPTeuNFA="; }; + SETUPTOOLS_SCM_PRETEND_VERSION = version; + nativeBuildInputs = [ setuptools-scm cython ]; - checkInputs = [ pytestCheckHook unittest2 ]; - pythonImportsCheck = [ "pyclipper" ]; + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "pyclipper" + ]; meta = with lib; { description = "Cython wrapper for clipper library"; - homepage = "https://github.com/fonttools/pyclipper"; - license = licenses.mit; + homepage = "https://github.com/fonttools/pyclipper"; + license = licenses.mit; maintainers = with maintainers; [ matthuszagh ]; }; } diff --git a/pkgs/development/python-modules/pydy/default.nix b/pkgs/development/python-modules/pydy/default.nix index 9bfa5aa3d7c..b342a2a99e0 100644 --- a/pkgs/development/python-modules/pydy/default.nix +++ b/pkgs/development/python-modules/pydy/default.nix @@ -6,31 +6,38 @@ , numpy , scipy , sympy +, pytestCheckHook }: buildPythonPackage rec { pname = "pydy"; version = "0.6.0"; + format = "setuptools"; src = fetchPypi { inherit pname version; sha256 = "sha256-e/Ssfd5llioA7ccLULlRdHR113IbR4AJ4/HmzQuU7vI="; }; - checkInputs = [ - nose - cython - ]; - propagatedBuildInputs = [ numpy scipy sympy ]; - checkPhase = '' - nosetests - ''; + checkInputs = [ + nose + cython + pytestCheckHook + ]; + + disabledTests = [ + # Tests not fixed yet. Check https://github.com/pydy/pydy/issues/465 + "test_generate_cse" + "test_generate_code_blocks" + "test_doprint" + "test_OctaveMatrixGenerator" + ]; meta = with lib; { description = "Python tool kit for multi-body dynamics"; diff --git a/pkgs/development/python-modules/pyfzf/default.nix b/pkgs/development/python-modules/pyfzf/default.nix new file mode 100644 index 00000000000..3578f863fa4 --- /dev/null +++ b/pkgs/development/python-modules/pyfzf/default.nix @@ -0,0 +1,39 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, fzf +, pythonOlder +}: + +buildPythonPackage rec { + pname = "pyfzf"; + version = "0.3.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "nk412"; + repo = pname; + rev = version; + hash = "sha256-w+ZjQGFd/lR2TiTHc2uQSJXORmzJJZXsr9BO4PIw/Co="; + }; + + propagatedBuildInputs = [ + fzf + ]; + + pythonImportsCheck = [ + "pyfzf" + ]; + + # Module has no tests + doCheck = false; + + meta = with lib; { + description = "Wrapper for fzf"; + homepage = "https://github.com/nk412/pyfzf"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/pyglet/default.nix b/pkgs/development/python-modules/pyglet/default.nix index db436983f3a..029061b8010 100644 --- a/pkgs/development/python-modules/pyglet/default.nix +++ b/pkgs/development/python-modules/pyglet/default.nix @@ -18,13 +18,13 @@ }: buildPythonPackage rec { - version = "1.5.23"; + version = "1.5.24"; pname = "pyglet"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-3ukgIDzzBhWcUDurti84eHJocIl39clF0oM3WUt5fEY="; + sha256 = "sha256-W0pNXlrVSUbjFJLqxn9ykuUaZXckRkGidxgPkKAZKo4="; extension = "zip"; }; diff --git a/pkgs/development/python-modules/pygments/default.nix b/pkgs/development/python-modules/pygments/default.nix new file mode 100644 index 00000000000..c8759a2fe05 --- /dev/null +++ b/pkgs/development/python-modules/pygments/default.nix @@ -0,0 +1,51 @@ +{ lib +, buildPythonPackage +, fetchPypi +, docutils +, lxml +, pytestCheckHook +, wcag-contrast-ratio +}: + +let pygments = buildPythonPackage + rec { + pname = "pygments"; + version = "2.12.0"; + + src = fetchPypi { + pname = "Pygments"; + inherit version; + sha256 = "sha256-XrEWEY+WEv8e6JrJZDe7a0no8E2KE7UUuib2ICCOJus="; + }; + + propagatedBuildInputs = [ + docutils + ]; + + # circular dependencies if enabled by default + doCheck = false; + checkInputs = [ + lxml + pytestCheckHook + wcag-contrast-ratio + ]; + + disabledTestPaths = [ + # 5 lines diff, including one nix store path in 20000+ lines + "tests/examplefiles/bash/ltmain.sh" + ]; + + pythonImportsCheck = [ "pygments" ]; + + passthru.tests = { + check = pygments.overridePythonAttrs (_: { doCheck = true; }); + }; + + meta = with lib; { + homepage = "https://pygments.org/"; + description = "A generic syntax highlighter"; + license = licenses.bsd2; + maintainers = with maintainers; [ SuperSandro2000 ]; + }; + }; +in pygments diff --git a/pkgs/development/python-modules/pygobject/3.nix b/pkgs/development/python-modules/pygobject/3.nix index dec84b4eccf..447d49a9442 100644 --- a/pkgs/development/python-modules/pygobject/3.nix +++ b/pkgs/development/python-modules/pygobject/3.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "pygobject"; - version = "3.42.0"; + version = "3.42.1"; outputs = [ "out" "dev" ]; @@ -26,7 +26,7 @@ buildPythonPackage rec { src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "mxJhbjLPx5L53IQdnEcqQaNbhbpn06brQn4wem/kNns="; + sha256 = "HzS192JN415E61p+tCg1MoW9AwBNVRMaX39/qbkPPMk="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pyhumps/default.nix b/pkgs/development/python-modules/pyhumps/default.nix index 51d5b8bce5e..00f8d47c1ef 100644 --- a/pkgs/development/python-modules/pyhumps/default.nix +++ b/pkgs/development/python-modules/pyhumps/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "pyhumps"; - version = "3.5.3"; + version = "3.7.1"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "nficano"; repo = "humps"; rev = "v${version}"; - hash = "sha256-6F61y0niPPuZBci15j68MFXzzBBimvbZ24+i9AZ7XJs="; + hash = "sha256-MxynGgl0bgRUNPdyGqtEpIo1OFEKsSfXFiG4lAL0aPQ="; }; nativeBuildInputs = [ @@ -33,8 +33,8 @@ buildPythonPackage rec { # Fix naming, https://github.com/nficano/humps/pull/246 (fetchpatch { name = "fix-naming.patch"; - url = "https://github.com/nficano/humps/commit/118f6bce785d170b10dd3afee467d26dcc8b425d.patch"; - sha256 = "sha256-oQxkLsihnHZlHiZEupwG9Dr1Ss1w+KjDsBtbEVDced4="; + url = "https://github.com/nficano/humps/commit/04739529247ec6c6715a0242a209863d8c66a24d.patch"; + sha256 = "sha256-6nCKO8BHSPXuT5pE/T/6Dsb6qKVdtRV22Ijbbgtm6ao="; }) ]; diff --git a/pkgs/development/python-modules/pylsp-mypy/default.nix b/pkgs/development/python-modules/pylsp-mypy/default.nix index c8551270797..5358b18402f 100644 --- a/pkgs/development/python-modules/pylsp-mypy/default.nix +++ b/pkgs/development/python-modules/pylsp-mypy/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "pylsp-mypy"; - version = "0.5.7"; + version = "0.5.8"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "Richardk2n"; repo = "pylsp-mypy"; - rev = version; - sha256 = "0am16z9kmj57r5pi32jhzlbdngzmvzzaiqjm7cba1izh7w5m6dvc"; + rev = "refs/tags/${version}"; + sha256 = "sha256-Yu1e/8gYFYEZ/IoFo8WnyRNYkCZ9i7NgjEjYBbagWMA="; }; disabledTests = [ diff --git a/pkgs/development/python-modules/pymbolic/default.nix b/pkgs/development/python-modules/pymbolic/default.nix index 9d6d799fc32..44aa012d57d 100644 --- a/pkgs/development/python-modules/pymbolic/default.nix +++ b/pkgs/development/python-modules/pymbolic/default.nix @@ -2,17 +2,21 @@ , buildPythonPackage , fetchPypi , matchpy -, pytools , pytestCheckHook +, pythonOlder +, pytools }: buildPythonPackage rec { pname = "pymbolic"; version = "2022.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-tS9FHdC5gD4D3jMgrzt85XIwcAYcbSMcACFvbaQlkBI="; + hash = "sha256-tS9FHdC5gD4D3jMgrzt85XIwcAYcbSMcACFvbaQlkBI="; }; propagatedBuildInputs = [ @@ -24,10 +28,20 @@ buildPythonPackage rec { pytestCheckHook ]; + postPatch = '' + # pytest is a test requirement not a run-time one + substituteInPlace setup.py \ + --replace '"pytest>=2.3",' "" + ''; + + pythonImportsCheck = [ + "pymbolic" + ]; + meta = with lib; { description = "A package for symbolic computation"; homepage = "https://documen.tician.de/pymbolic/"; license = licenses.mit; - maintainers = [ maintainers.costrouc ]; + maintainers = with maintainers; [ costrouc ]; }; } diff --git a/pkgs/development/python-modules/pymdown-extensions/default.nix b/pkgs/development/python-modules/pymdown-extensions/default.nix index 94a73fd8211..068c3196952 100644 --- a/pkgs/development/python-modules/pymdown-extensions/default.nix +++ b/pkgs/development/python-modules/pymdown-extensions/default.nix @@ -1,7 +1,7 @@ { lib , buildPythonPackage , fetchFromGitHub -, fetchpatch +, hatchling , pytestCheckHook , markdown , pyyaml @@ -38,26 +38,17 @@ let in buildPythonPackage rec { pname = "pymdown-extensions"; - version = "9.1"; + version = "9.4"; format = "pyproject"; src = fetchFromGitHub { owner = "facelessuser"; repo = "pymdown-extensions"; rev = version; - sha256 = "sha256-II8Po8144h3wPFrzMbOB/qiCm2HseYrcZkyIZFGT+ek="; + sha256 = "sha256-9oYLDerz6ZcE4QyLO4mFPuHws8oZoXX8LcSV209MFec="; }; - patches = [ - # this patch is needed to allow tests to pass for later versions of the - # markdown dependency - # - # it can be removed after the next pymdown-extensions release - (fetchpatch { - url = "https://github.com/facelessuser/pymdown-extensions/commit/8ee5b5caec8f9373e025f50064585fb9d9b71f86.patch"; - sha256 = "sha256-jTHNcsV0zL0EkSTSj8zCGXXtpUaLnNPldmL+krZj3Gk="; - }) - ]; + nativeBuildInputs = [ hatchling ]; propagatedBuildInputs = [ markdown pygments ]; diff --git a/pkgs/development/python-modules/pynest2d/default.nix b/pkgs/development/python-modules/pynest2d/default.nix index 9be7072a89f..dd290ad5782 100644 --- a/pkgs/development/python-modules/pynest2d/default.nix +++ b/pkgs/development/python-modules/pynest2d/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchFromGitHub, python3, cmake +{ lib, buildPythonPackage, fetchFromGitHub, python, cmake , libnest2d, sip_4, clipper }: buildPythonPackage rec { @@ -19,7 +19,7 @@ buildPythonPackage rec { CLIPPER_PATH = "${clipper.out}"; postPatch = '' - sed -i 's#''${Python3_SITEARCH}#${placeholder "out"}/${python3.sitePackages}#' cmake/SIPMacros.cmake + sed -i 's#''${Python3_SITEARCH}#${placeholder "out"}/${python.sitePackages}#' cmake/SIPMacros.cmake ''; meta = with lib; { diff --git a/pkgs/development/python-modules/pynetdicom/default.nix b/pkgs/development/python-modules/pynetdicom/default.nix index 32c93b50e55..52860b00174 100644 --- a/pkgs/development/python-modules/pynetdicom/default.nix +++ b/pkgs/development/python-modules/pynetdicom/default.nix @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "pydicom"; repo = pname; rev = "v${version}"; - sha256 = "sha256-/JWQUtFBW4uqCbs/nUxj1pRBfTCXV4wcqTkqvzpdFrM="; + hash = "sha256-/JWQUtFBW4uqCbs/nUxj1pRBfTCXV4wcqTkqvzpdFrM="; }; propagatedBuildInputs = [ @@ -41,6 +41,7 @@ buildPythonPackage rec { "TestEchoSCP" "TestEchoSCPCLI" "TestEventHandlingAcceptor" + "TestEventHandlingRequestor" "TestFindSCP" "TestFindSCPCLI" "TestGetSCP" diff --git a/pkgs/development/python-modules/pynetgear/default.nix b/pkgs/development/python-modules/pynetgear/default.nix index 454c684076b..464417740c3 100644 --- a/pkgs/development/python-modules/pynetgear/default.nix +++ b/pkgs/development/python-modules/pynetgear/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "pynetgear"; - version = "0.10.0"; + version = "0.10.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "MatMaul"; repo = pname; rev = "refs/tags/${version}"; - sha256 = "sha256-l+hfE1YdSoMWLonSWKX0809M0OCYxpcvPd4gV9mS4DI="; + sha256 = "sha256-XGD1kA64rUC6WvG7VGX+f3g7fBvWqfA4ujiWAQzKeEA="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pynx584/default.nix b/pkgs/development/python-modules/pynx584/default.nix index 0f2fc2e7c0b..0b2583201a9 100644 --- a/pkgs/development/python-modules/pynx584/default.nix +++ b/pkgs/development/python-modules/pynx584/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "pynx584"; - version = "0.6"; + version = "0.7"; disabled = pythonOlder "3.6"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "kk7ds"; repo = pname; rev = version; - sha256 = "0if1jq8qiqp4w4zhf2xzzcb8y70hr5pxqzh96i008p6izjha89y6"; + sha256 = "sha256-44JFq19fpJmpZzLeVcBILs8c9bOfWyMrb2jA4Yx8+Co="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyomo/default.nix b/pkgs/development/python-modules/pyomo/default.nix index 105f78b5824..3a9a80d5781 100644 --- a/pkgs/development/python-modules/pyomo/default.nix +++ b/pkgs/development/python-modules/pyomo/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "pyomo"; - version = "6.4.0"; + version = "6.4.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -17,8 +17,8 @@ buildPythonPackage rec { src = fetchFromGitHub { repo = "pyomo"; owner = "pyomo"; - rev = version; - hash = "sha256-FdUhne5Dn5hTIXMce1G6Zu6nx+AuP/JdK0a5fCE3hg8="; + rev = "refs/tags/${version}"; + hash = "sha256-LwlUib/CeVCCmgpTHtYHcFyxk9Esx1zhZ3yGHeGpugY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyparsing/default.nix b/pkgs/development/python-modules/pyparsing/default.nix index fb5abc5c352..3d10fca06c0 100644 --- a/pkgs/development/python-modules/pyparsing/default.nix +++ b/pkgs/development/python-modules/pyparsing/default.nix @@ -1,9 +1,7 @@ { buildPythonPackage , fetchFromGitHub , lib - -# since this is a dependency of pytest, we need to avoid -# circular dependencies +, flit-core , jinja2 , pytestCheckHook , railroad-diagrams @@ -12,16 +10,21 @@ let pyparsing = buildPythonPackage rec { pname = "pyparsing"; - version = "3.0.7"; + version = "3.0.9"; + format = "pyproject"; src = fetchFromGitHub { owner = "pyparsing"; repo = pname; rev = "pyparsing_${version}"; - sha256 = "sha256-RyvTTbFshAZgyZPgzqcq31E504RlnMZuf16jJYGqDDI="; + sha256 = "sha256-aCRyJQyLf8qQ6NO41q+HC856TjIHzIt0vyVBLV+3teE="; }; - # circular dependencies if enabled by default + nativeBuildInputs = [ + flit-core + ]; + + # circular dependencies with pytest if enabled by default doCheck = false; checkInputs = [ jinja2 @@ -43,4 +46,4 @@ let }; }; in - pyparsing +pyparsing diff --git a/pkgs/development/python-modules/pyrfxtrx/default.nix b/pkgs/development/python-modules/pyrfxtrx/default.nix index 30dd52e3eea..663440965fd 100644 --- a/pkgs/development/python-modules/pyrfxtrx/default.nix +++ b/pkgs/development/python-modules/pyrfxtrx/default.nix @@ -7,13 +7,13 @@ buildPythonPackage rec { pname = "pyrfxtrx"; - version = "0.28.0"; + version = "0.29.0"; src = fetchFromGitHub { owner = "Danielhiversen"; repo = "pyRFXtrx"; rev = version; - hash = "sha256-Ty+yIA8amKyV3z++7n1m/YRH0gEoVIVTdX8xiZYp/eM="; + hash = "sha256-0tdT7UIT9F2z9+ufnzaACVxRybWxFjZObYQCd3hcXTk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyrogram/default.nix b/pkgs/development/python-modules/pyrogram/default.nix index 2a55491ac0d..ae79f36a06c 100644 --- a/pkgs/development/python-modules/pyrogram/default.nix +++ b/pkgs/development/python-modules/pyrogram/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "pyrogram"; - version = "2.0.19"; + version = "2.0.24"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "pyrogram"; repo = "pyrogram"; rev = "v${version}"; - hash = "sha256-HcUawiKlPS0zqB5kEScfV82xnLG0n62owzK5upOLn4I="; + hash = "sha256-YcVVXaPM+X+9prjgRYYSs8dkho3YKvtn/0FNJVnsrGM="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyscf/default.nix b/pkgs/development/python-modules/pyscf/default.nix index d08289d7573..5b2f3941b2b 100644 --- a/pkgs/development/python-modules/pyscf/default.nix +++ b/pkgs/development/python-modules/pyscf/default.nix @@ -1,5 +1,4 @@ { buildPythonPackage -, python3 , lib , fetchFromGitHub , cmake diff --git a/pkgs/development/python-modules/pyshark/default.nix b/pkgs/development/python-modules/pyshark/default.nix index 1bb91953983..ded9bcbbc4e 100644 --- a/pkgs/development/python-modules/pyshark/default.nix +++ b/pkgs/development/python-modules/pyshark/default.nix @@ -1,38 +1,53 @@ -{ lib, buildPythonPackage, fetchFromGitHub, py, lxml, pytestCheckHook, wireshark-cli }: +{ lib +, buildPythonPackage +, fetchFromGitHub +, lxml +, packaging +, py +, pytestCheckHook +, pythonOlder +, wireshark-cli +}: buildPythonPackage rec { pname = "pyshark"; - version = "0.4.3"; + version = "0.4.5"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "KimiNewt"; repo = pname; - rev = "v${version}"; - sha256 = "sha256-cveiFkkSplfQPgUEVWyV40KKHCtKJZsfvdV8JmEUmE4="; + # 0.4.5 was the last release which was tagged + # https://github.com/KimiNewt/pyshark/issues/541 + rev = "8f8f13aba6ae716aa0a48175255063fe542fdc3b"; + hash = "sha256-v9CC9hgTABAiJ0qiFZ/9/zMmHzJXKq3neGtTq/ucnT4="; }; + sourceRoot = "${src.name}/src"; + propagatedBuildInputs = [ py lxml + packaging ]; - preConfigure = '' - cd src - ''; - - preCheck = '' - cd .. - ''; - checkInputs = [ pytestCheckHook wireshark-cli ]; - pythonImportsCheck = [ "pyshark" ]; + pythonImportsCheck = [ + "pyshark" + ]; + + pytestFlagsArray = [ + "../tests/" + ]; meta = with lib; { - description = "Python wrapper for tshark, allowing python packet parsing using wireshark dissectors"; + description = "Python wrapper for tshark, allowing Python packet parsing using Wireshark dissectors"; homepage = "https://github.com/KimiNewt/pyshark/"; license = licenses.mit; maintainers = with maintainers; [ petabyteboy ]; diff --git a/pkgs/development/python-modules/pyskyqhub/default.nix b/pkgs/development/python-modules/pyskyqhub/default.nix index b0d1f8010fb..6f60fec79f2 100644 --- a/pkgs/development/python-modules/pyskyqhub/default.nix +++ b/pkgs/development/python-modules/pyskyqhub/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "pyskyqhub"; - version = "0.1.8"; + version = "0.1.9"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "RogerSelwyn"; repo = "skyq_hub"; rev = version; - sha256 = "sha256-1KNgF3d5w+aNKNkOZVkdD3VVLz/F8NyQ5MxO1UaWrFk="; + sha256 = "sha256-yXqtABbsCh1yb96lsEA0gquikVenGLCo6J93AeXAC8k="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyskyqremote/default.nix b/pkgs/development/python-modules/pyskyqremote/default.nix index 2a3c7166f0c..fcbcdbb94b0 100644 --- a/pkgs/development/python-modules/pyskyqremote/default.nix +++ b/pkgs/development/python-modules/pyskyqremote/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "pyskyqremote"; - version = "0.3.7"; + version = "0.3.11"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "RogerSelwyn"; repo = "skyq_remote"; rev = "refs/tags/${version}"; - sha256 = "sha256-VdoAtY+uZ4M6UNjYplqxx8S11eyKzqypW7IYCXOO2kQ="; + sha256 = "sha256-SEflyy8q/QIrQEc2i2x0Es9U+zDZLQI+cJGO4e/qBfc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pytesseract/default.nix b/pkgs/development/python-modules/pytesseract/default.nix index 13cfdaea214..c99e6acbfbf 100644 --- a/pkgs/development/python-modules/pytesseract/default.nix +++ b/pkgs/development/python-modules/pytesseract/default.nix @@ -1,13 +1,17 @@ -{ buildPythonPackage, fetchPypi, lib, packaging, pillow, tesseract, substituteAll }: +{ buildPythonPackage, fetchFromGitHub, lib, packaging, pillow, tesseract, substituteAll +, pytestCheckHook +}: buildPythonPackage rec { pname = "pytesseract"; - version = "0.3.9"; + version = "0.3.10"; format = "pyproject"; - src = fetchPypi { - inherit pname version; - sha256 = "sha256-fiuvx/SNG7cUQ85GM6VvXiGSWpjyIKNsM2KX7c0ZVtA="; + src = fetchFromGitHub { + owner = "madmaze"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-CyKXtaIE/8iPLqi0GHVUgTeJDYZyWBjkRvOKJJKCxZo="; }; patches = [ @@ -26,8 +30,7 @@ buildPythonPackage rec { pillow ]; - # the package doesn't have any tests. - doCheck = false; + checkInputs = [ pytestCheckHook ]; meta = with lib; { homepage = "https://pypi.org/project/pytesseract/"; diff --git a/pkgs/development/python-modules/pytest-cases/default.nix b/pkgs/development/python-modules/pytest-cases/default.nix index 96a434ecc5c..6697db4746e 100644 --- a/pkgs/development/python-modules/pytest-cases/default.nix +++ b/pkgs/development/python-modules/pytest-cases/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "pytest-cases"; - version = "3.6.12"; + version = "3.6.13"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-pZ7GGqc+Nd71V+3I2LYVMYbaLBPG5+Ze+d7Mb5CONCI="; + sha256 = "sha256-e1hEMyMSgLFqdPNNm6H1CrzGuXPTujrakFPCxBoR+3c="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/python-barcode/default.nix b/pkgs/development/python-modules/python-barcode/default.nix index 7a586c2caed..165cb5cc5d2 100644 --- a/pkgs/development/python-modules/python-barcode/default.nix +++ b/pkgs/development/python-modules/python-barcode/default.nix @@ -3,29 +3,32 @@ , fetchPypi , pythonOlder , setuptools-scm -, imagesSupport ? false , pillow , pytestCheckHook }: buildPythonPackage rec { pname = "python-barcode"; - version = "0.13.1"; + version = "0.14.0"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-+vukqiTp2Wl3e+UhwpT/GPbCs2rWO1/C8hCNly4jslI="; + sha256 = "sha256-JBs0qlxctqmImIL5QJsBgpA6LF0ZtCGL42Cc271f/fk="; }; propagatedBuildInputs = [ setuptools-scm - ] ++ lib.optionals (imagesSupport) [ - pillow ]; + passthru.extras-require = { + images = [ + pillow + ]; + }; + postPatch = '' substituteInPlace setup.cfg \ --replace "--cov=barcode" "" \ @@ -35,7 +38,7 @@ buildPythonPackage rec { checkInputs = [ pytestCheckHook - ]; + ] ++ passthru.extras-require.images; pythonImportsCheck = [ "barcode" ]; diff --git a/pkgs/development/python-modules/python-fsutil/default.nix b/pkgs/development/python-modules/python-fsutil/default.nix index 760e86f6ecf..3f18bd09aa4 100644 --- a/pkgs/development/python-modules/python-fsutil/default.nix +++ b/pkgs/development/python-modules/python-fsutil/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "python-fsutil"; - version = "0.6.0"; + version = "0.6.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -16,8 +16,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "fabiocaccamo"; repo = pname; - rev = version; - hash = "sha256-DY0QGHD7HdLnKnbPV17UZl9u3Ac9YZdYvQXLOzmRGos="; + rev = "refs/tags/${version}"; + hash = "sha256-Swq0kAZTM/zP3LXMkzZnp8KTI0YzGPIbWV2kKV1Dw0k="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/python-heatclient/default.nix b/pkgs/development/python-modules/python-heatclient/default.nix index d78682a8c66..dc1694b83e8 100644 --- a/pkgs/development/python-modules/python-heatclient/default.nix +++ b/pkgs/development/python-modules/python-heatclient/default.nix @@ -2,7 +2,7 @@ , buildPythonApplication , fetchPypi , pbr -, Babel +, babel , cliff , iso8601 , osc-lib @@ -31,7 +31,7 @@ buildPythonApplication rec { propagatedBuildInputs = [ pbr - Babel + babel cliff iso8601 osc-lib diff --git a/pkgs/development/python-modules/python-keystoneclient/default.nix b/pkgs/development/python-modules/python-keystoneclient/default.nix index c9161e17e30..470e0734dda 100644 --- a/pkgs/development/python-modules/python-keystoneclient/default.nix +++ b/pkgs/development/python-modules/python-keystoneclient/default.nix @@ -6,6 +6,7 @@ , oslo-config , oslo-serialization , pbr +, pythonOlder , requests-mock , stestr , testresources @@ -14,11 +15,14 @@ buildPythonPackage rec { pname = "python-keystoneclient"; - version = "4.4.0"; + version = "4.5.0"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - sha256 = "fc17ca9a1aa493104b496ba347f12507f271b5b6e819f4de4aef6574918aa071"; + hash = "sha256-bX8FxpLn2yaSd4KEx3mubOqLIVmRS0QXpfoL/qHinNw="; }; propagatedBuildInputs = [ @@ -40,7 +44,9 @@ buildPythonPackage rec { stestr run ''; - pythonImportsCheck = [ "keystoneclient" ]; + pythonImportsCheck = [ + "keystoneclient" + ]; meta = with lib; { description = "Client Library for OpenStack Identity"; diff --git a/pkgs/development/python-modules/python-manilaclient/default.nix b/pkgs/development/python-modules/python-manilaclient/default.nix index 09dc46ba955..4c16d886e5f 100644 --- a/pkgs/development/python-modules/python-manilaclient/default.nix +++ b/pkgs/development/python-modules/python-manilaclient/default.nix @@ -13,20 +13,24 @@ , simplejson , sphinx , sphinxcontrib-programoutput -, Babel +, babel , osc-lib , python-keystoneclient , debtcollector , callPackage +, pythonOlder }: buildPythonApplication rec { pname = "python-manilaclient"; - version = "3.3.0"; + version = "3.4.0"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-JFfkbJHmDQFbiWXw0Wp+0xSLyXowIHnsw7+5irZwhXo="; + hash = "sha256-F41/k7NJigwFNw2946sj3dZDKDH+PkgOjkml9t3Mgtw="; }; nativeBuildInputs = [ @@ -45,7 +49,7 @@ buildPythonApplication rec { prettytable requests simplejson - Babel + babel osc-lib python-keystoneclient debtcollector @@ -64,7 +68,9 @@ buildPythonApplication rec { tests = callPackage ./tests.nix { }; }; - pythonImportsCheck = [ "manilaclient" ]; + pythonImportsCheck = [ + "manilaclient" + ]; meta = with lib; { description = "Client library for OpenStack Manila API"; diff --git a/pkgs/development/python-modules/python-novaclient/default.nix b/pkgs/development/python-modules/python-novaclient/default.nix index e654c75bfe8..d4a9e9255f2 100644 --- a/pkgs/development/python-modules/python-novaclient/default.nix +++ b/pkgs/development/python-modules/python-novaclient/default.nix @@ -9,6 +9,7 @@ , oslo-serialization , pbr , prettytable +, pythonOlder , requests-mock , stestr , testscenarios @@ -16,11 +17,14 @@ buildPythonPackage rec { pname = "python-novaclient"; - version = "17.7.0"; + version = "18.0.0"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; src = fetchPypi { inherit pname version; - sha256 = "sha256-Trwn9M4GwVW46ZGkRGO5NYWW5oVs8XHJr43HVo2Gi+0="; + hash = "sha256-6esqm9ukZNggwQB3XDwvZJMIjfZq8T37kyXMa4ZcjSM="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/python-swiftclient/default.nix b/pkgs/development/python-modules/python-swiftclient/default.nix index 8c1e38ed45e..357ba701d18 100644 --- a/pkgs/development/python-modules/python-swiftclient/default.nix +++ b/pkgs/development/python-modules/python-swiftclient/default.nix @@ -5,19 +5,26 @@ , openstacksdk , pbr , python-keystoneclient +, pythonOlder , stestr }: buildPythonApplication rec { pname = "python-swiftclient"; - version = "3.13.1"; + version = "4.0.0"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-LSbJC2OS9r76f7sW/Np75Eqibiropb7icF0dHIE4M/A="; + hash = "sha256-V7bx/yO0ZoQ4AqaBb0trvGiWtq0F1ld6/udiK+OilTg="; }; - propagatedBuildInputs = [ pbr python-keystoneclient ]; + propagatedBuildInputs = [ + pbr + python-keystoneclient + ]; checkInputs = [ mock @@ -33,7 +40,9 @@ buildPythonApplication rec { stestr run ''; - pythonImportsCheck = [ "swiftclient" ]; + pythonImportsCheck = [ + "swiftclient" + ]; meta = with lib; { homepage = "https://github.com/openstack/python-swiftclient"; diff --git a/pkgs/development/python-modules/pytorch-lightning/default.nix b/pkgs/development/python-modules/pytorch-lightning/default.nix index d3c9a965515..0b562f4b5a2 100644 --- a/pkgs/development/python-modules/pytorch-lightning/default.nix +++ b/pkgs/development/python-modules/pytorch-lightning/default.nix @@ -3,15 +3,18 @@ , fetchFromGitHub , isPy27 , future +, fsspec +, packaging , pytestCheckHook , pytorch , pyyaml , tensorboard +, torchmetrics , tqdm }: buildPythonPackage rec { pname = "pytorch-lightning"; - version = "1.5.10"; + version = "1.6.3"; disabled = isPy27; @@ -19,14 +22,17 @@ buildPythonPackage rec { owner = "PyTorchLightning"; repo = pname; rev = version; - sha256 = "sha256-GP6/VZuRv8dS5wKQW7RbtOSa2vV9Af2Jp+ioEW3bIgc="; + hash = "sha256-MEUFrj84y5lQfwbC9s9fJNOKo+Djeh+E/eDc8KeX7V4="; }; propagatedBuildInputs = [ + packaging future + fsspec pytorch pyyaml tensorboard + torchmetrics tqdm ]; diff --git a/pkgs/development/python-modules/pyvex/default.nix b/pkgs/development/python-modules/pyvex/default.nix index 682bc0d80ac..095de81b261 100644 --- a/pkgs/development/python-modules/pyvex/default.nix +++ b/pkgs/development/python-modules/pyvex/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "pyvex"; - version = "9.2.3"; + version = "9.2.4"; format = "pyproject"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-uGZlWDTDczBiNCd4D4y6Umz44G8Zn3Zr8/R7Kn+4aS8="; + hash = "sha256-r+dmf5qIjiN5vmdzBmPORnPWPrjLKGks+OAdZXdAbOc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyvips/default.nix b/pkgs/development/python-modules/pyvips/default.nix index 39747678566..4742143edad 100644 --- a/pkgs/development/python-modules/pyvips/default.nix +++ b/pkgs/development/python-modules/pyvips/default.nix @@ -1,18 +1,26 @@ -{ buildPythonPackage, fetchFromGitHub, pytestCheckHook, glib, vips, cffi -, pkgconfig, lib }: +{ stdenv +, buildPythonPackage +, fetchFromGitHub +, pytestCheckHook +, glib +, vips +, cffi +, pkgconfig # from pythonPackages +, pkg-config # from pkgs +, lib }: buildPythonPackage rec { pname = "pyvips"; - version = "2.1.16"; + version = "2.2.0"; src = fetchFromGitHub { owner = "libvips"; repo = "pyvips"; rev = "v${version}"; - sha256 = "sha256-8CeQbx3f2i0lEU0wxPeUwHlUGtzOztzTOdFNjIDy8s0="; + sha256 = "sha256-qMVoVzqXALhPWVKLzu+VqihHPN7J+pMhKnXdb+ow0zw="; }; - nativeBuildInputs = [ pkgconfig ]; + nativeBuildInputs = [ pkgconfig pkg-config ]; buildInputs = [ glib vips ]; @@ -20,6 +28,14 @@ buildPythonPackage rec { checkInputs = [ pytestCheckHook ]; + postPatch = '' + substituteInPlace pyvips/__init__.py \ + --replace 'libvips.so.42' '${lib.getLib vips}/lib/libvips${stdenv.hostPlatform.extensions.sharedLibrary}' \ + --replace 'libvips.42.dylib' '${lib.getLib vips}/lib/libvips${stdenv.hostPlatform.extensions.sharedLibrary}' \ + --replace 'libgobject-2.0.so.0' '${glib.out}/lib/libgobject-2.0${stdenv.hostPlatform.extensions.sharedLibrary}' \ + --replace 'libgobject-2.0.dylib' '${glib.out}/lib/libgobject-2.0${stdenv.hostPlatform.extensions.sharedLibrary}' \ + ''; + pythonImportsCheck = [ "pyvips" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/pywlroots/default.nix b/pkgs/development/python-modules/pywlroots/default.nix index fdae8fdc104..410e5237265 100644 --- a/pkgs/development/python-modules/pywlroots/default.nix +++ b/pkgs/development/python-modules/pywlroots/default.nix @@ -19,14 +19,14 @@ buildPythonPackage rec { pname = "pywlroots"; - version = "0.15.13"; + version = "0.15.14"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "teZ8udox+4NefgA73gD5d6hPur/zjCapoMYPW36ax0s="; + sha256 = "z0PVjVzmAb5cgBdXWMxOdsy0VMMkmewHZaPNBYivXSA="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/python-modules/qcs-api-client/default.nix b/pkgs/development/python-modules/qcs-api-client/default.nix index 41412e16f8f..92aaabb4e1a 100644 --- a/pkgs/development/python-modules/qcs-api-client/default.nix +++ b/pkgs/development/python-modules/qcs-api-client/default.nix @@ -20,7 +20,7 @@ buildPythonPackage rec { pname = "qcs-api-client"; - version = "0.20.10"; + version = "0.20.12"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -29,7 +29,7 @@ buildPythonPackage rec { owner = "rigetti"; repo = "qcs-api-client-python"; rev = "v${version}"; - hash = "sha256-pBC8pFrk6iNYPS3/LKaVo+ds2okN56bxzvffEfs6SrU="; + hash = "sha256-4462T2WIBdWjtd51YfslYZOcJg9f0nrSOKTi2ed6WvI="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/rdflib/default.nix b/pkgs/development/python-modules/rdflib/default.nix index 1a587d8d61a..1aa99891134 100644 --- a/pkgs/development/python-modules/rdflib/default.nix +++ b/pkgs/development/python-modules/rdflib/default.nix @@ -43,7 +43,7 @@ buildPythonPackage rec { importlib-metadata ]; - passthru.extra-requires = { + passthru.extras-require = { html = [ html5lib ]; @@ -55,8 +55,8 @@ buildPythonPackage rec { checkInputs = [ pytestCheckHook ] - ++ passthru.extra-requires.networkx - ++ passthru.extra-requires.html; + ++ passthru.extras-require.networkx + ++ passthru.extras-require.html; pytestFlagsArray = [ # requires network access diff --git a/pkgs/development/python-modules/reportengine/default.nix b/pkgs/development/python-modules/reportengine/default.nix new file mode 100644 index 00000000000..6168f62d463 --- /dev/null +++ b/pkgs/development/python-modules/reportengine/default.nix @@ -0,0 +1,53 @@ +{ lib +, buildPythonPackage +, fetchPypi +, flit +, jinja2 +, ruamel-yaml +, matplotlib +, pandas +, pandoc +, pygments +, blessings +, curio +, hypothesis +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "reportengine"; + version = "0.30.dev0"; + format = "pyproject"; + + src = fetchPypi { + inherit pname version; + sha256 = "eb612994b7f364e872301b4569b544648e95e587d803284ddb5610efc8f2170f"; + }; + + nativeBuildInputs = [ flit ]; + + propagatedBuildInputs = [ + jinja2 + ruamel-yaml + matplotlib + pandas + pygments + blessings + curio + ]; + + checkInputs = [ + hypothesis + pandoc + pytestCheckHook + ]; + + pythonImportsCheck = [ "reportengine" ]; + + meta = with lib; { + description = "A framework for declarative data analysis"; + homepage = "https://github.com/NNPDF/reportengine/"; + license = with licenses; [ gpl2Only ]; + maintainers = with maintainers; [ veprbl ]; + }; +} diff --git a/pkgs/development/python-modules/reproject/default.nix b/pkgs/development/python-modules/reproject/default.nix index 999c6882380..02a6b149eb0 100644 --- a/pkgs/development/python-modules/reproject/default.nix +++ b/pkgs/development/python-modules/reproject/default.nix @@ -1,50 +1,63 @@ { lib -, buildPythonPackage -, fetchPypi -, fetchpatch -, numpy , astropy +, astropy-extension-helpers , astropy-healpix , astropy-helpers -, astropy-extension-helpers -, scipy -, pytest +, buildPythonPackage +, cython +, fetchPypi +, numpy , pytest-astropy +, pytestCheckHook +, pythonOlder +, scipy , setuptools-scm -, cython }: buildPythonPackage rec { pname = "reproject"; - version = "0.7.1"; + version = "0.8"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "1jsc3ad518vyys5987fr1achq8qvnz8rm80zp5an9qxlwr4zmh4m"; + hash = "sha256-Z54sY3R6GViTvMLHrJclrAZ1dH4/9bzIrgqDd9nFbJY="; }; - patches = [ (fetchpatch { - # Can be removed in next release after 0.7.1 - # See https://github.com/astropy/reproject/issues/246 - url = "https://github.com/astropy/reproject/pull/243.patch"; - sha256 = "0dq3ii39hsrks0b9v306dlqf07dx0hqad8rwajmzw6rfda9m3c2a"; - }) + nativeBuildInputs = [ + astropy-extension-helpers + astropy-helpers + cython + setuptools-scm ]; - propagatedBuildInputs = [ numpy astropy astropy-healpix astropy-helpers scipy ]; - nativeBuildInputs = [ astropy-helpers cython astropy-extension-helpers setuptools-scm ]; - checkInputs = [ pytest pytest-astropy ]; + propagatedBuildInputs = [ + astropy + astropy-healpix + astropy-helpers + numpy + scipy + ]; - # Tests must be run in the build directory - checkPhase = '' + checkInputs = [ + pytest-astropy + pytestCheckHook + ]; + + preCheck = '' cd build/lib* - pytest ''; + pythonImportsCheck = [ + "reproject" + ]; + meta = with lib; { description = "Reproject astronomical images"; homepage = "https://reproject.readthedocs.io"; license = licenses.bsd3; - maintainers = [ maintainers.smaret ]; + maintainers = with maintainers; [ smaret ]; }; } diff --git a/pkgs/development/python-modules/rich/default.nix b/pkgs/development/python-modules/rich/default.nix index 4def2f46317..765ef5ba7d5 100644 --- a/pkgs/development/python-modules/rich/default.nix +++ b/pkgs/development/python-modules/rich/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "rich"; - version = "12.3.0"; + version = "12.4.1"; format = "pyproject"; disabled = pythonOlder "3.6"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "Textualize"; repo = pname; rev = "v${version}"; - sha256 = "sha256-/BPJcFjUldbTa/M3i9jGGU7apbrTcWbF+yrrFuLXcHY="; + sha256 = "sha256-6fr5mtZwXdZihoHEjF1jJxOLH3ajPX1tF2N/ZCV9g50="; }; nativeBuildInputs = [ poetry-core ]; diff --git a/pkgs/development/python-modules/rns/default.nix b/pkgs/development/python-modules/rns/default.nix index fde916994a4..26126e92b97 100644 --- a/pkgs/development/python-modules/rns/default.nix +++ b/pkgs/development/python-modules/rns/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "rns"; - version = "0.3.5"; + version = "0.3.6"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -17,8 +17,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "markqvist"; repo = "Reticulum"; - rev = version; - hash = "sha256-LzrI5pJ3mLaxikqS1eWFvdgneoCnsRTYWbshVX7U8lg="; + rev = "refs/tags/${version}"; + hash = "sha256-awVUE5sViaGBne82oAxGeabZSnLn/dzBQTwP7xRdYKE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/rstcheck/default.nix b/pkgs/development/python-modules/rstcheck/default.nix index 606b2879908..5bf519e99ec 100644 --- a/pkgs/development/python-modules/rstcheck/default.nix +++ b/pkgs/development/python-modules/rstcheck/default.nix @@ -1,18 +1,50 @@ -{ lib, fetchFromGitHub, buildPythonPackage, docutils }: +{ lib +, buildPythonPackage +, docutils +, fetchFromGitHub +, poetry-core +, pytestCheckHook +, pythonOlder +, types-docutils +, typing-extensions +}: buildPythonPackage rec { pname = "rstcheck"; - version = "3.3.1"; + version = "5.0.0"; + format = "pyproject"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "myint"; repo = pname; rev = "v${version}"; - sha256 = "sha256-4AhENuT+LtUMCi+aaI/rKa2gHti8sKGLdVGjdRithXI="; + hash = "sha256-vTUa/eP6/flxRLBuzdHoNoPoGAg6XWwu922az8tLgJM="; }; - pythonImportsCheck = [ "rstcheck" ]; - propagatedBuildInputs = [ docutils ]; + nativeBuildInputs = [ + poetry-core + ]; + + propagatedBuildInputs = [ + docutils + types-docutils + typing-extensions + ]; + + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "rstcheck" + ]; + + preCheck = '' + # The tests need to find and call the rstcheck executable + export PATH="$PATH:$out/bin"; + ''; meta = with lib; { description = "Checks syntax of reStructuredText and code blocks nested within it"; diff --git a/pkgs/development/python-modules/sagemaker/default.nix b/pkgs/development/python-modules/sagemaker/default.nix index dff960429fb..59445a1dbf2 100644 --- a/pkgs/development/python-modules/sagemaker/default.nix +++ b/pkgs/development/python-modules/sagemaker/default.nix @@ -17,14 +17,14 @@ buildPythonPackage rec { pname = "sagemaker"; - version = "2.82.0"; + version = "2.91.1"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-cQe4b5XpmaC9ZTanI9LKNTLw1HycxqaDCOuLfw/vBRY="; + hash = "sha256-DP6bdakmOX2qiqbkz/D4Q/aexjy7dTDXlDKvnCf3SaA="; }; propagatedBuildInputs = [ @@ -41,6 +41,11 @@ buildPythonPackage rec { pandas ]; + postPatch = '' + substituteInPlace setup.py \ + --replace "attrs==20.3.0" "attrs>=20.3.0" + ''; + postFixup = '' [ "$($out/bin/sagemaker-upgrade-v2 --help 2>&1 | grep -cim1 'pandas failed to import')" -eq "0" ] ''; diff --git a/pkgs/development/python-modules/sanic/default.nix b/pkgs/development/python-modules/sanic/default.nix index 228bf2a5624..ff76e2c5631 100644 --- a/pkgs/development/python-modules/sanic/default.nix +++ b/pkgs/development/python-modules/sanic/default.nix @@ -82,6 +82,9 @@ buildPythonPackage rec { # needed for relative paths for some packages cd tests + '' + lib.optionalString stdenv.isDarwin '' + # OSError: [Errno 24] Too many open files + ulimit -n 1024 ''; # uvloop usage is buggy diff --git a/pkgs/development/python-modules/scikit-build/default.nix b/pkgs/development/python-modules/scikit-build/default.nix index 17b2ac35567..4a466fcef06 100644 --- a/pkgs/development/python-modules/scikit-build/default.nix +++ b/pkgs/development/python-modules/scikit-build/default.nix @@ -1,7 +1,6 @@ { lib , buildPythonPackage , fetchPypi -, fetchpatch , distro , packaging , python @@ -24,21 +23,14 @@ buildPythonPackage rec { pname = "scikit-build"; - version = "0.14.1"; + version = "0.15.0"; format = "pyproject"; src = fetchPypi { inherit pname version; - sha256 = "sha256-Fwc9g3tWVRvt6Pa++utOuj2UM15ZAjmELjZg8HY6CRo="; + sha256 = "sha256-5yPNDzSJoEI3C56piLu5z9dyXoslsgyhx5gYIfz2X7k="; }; - patches = [ - (fetchpatch { - url = "https://github.com/scikit-build/scikit-build/commit/59cf7a5b09a71d418947db3c9d487471c4573a24.patch"; - sha256 = "sha256-oQllX3qzwWwllczXUMObrwndCfvMdS5FulEhbBORAks="; - }) - ]; - propagatedBuildInputs = [ distro packaging diff --git a/pkgs/development/python-modules/seaborn/default.nix b/pkgs/development/python-modules/seaborn/default.nix index c190093bb30..8d94264721b 100644 --- a/pkgs/development/python-modules/seaborn/default.nix +++ b/pkgs/development/python-modules/seaborn/default.nix @@ -1,4 +1,5 @@ { lib +, stdenv , buildPythonPackage , fetchPypi , matplotlib @@ -33,16 +34,19 @@ buildPythonPackage rec { ]; disabledTests = [ - # Tests fail because of AttributeError:... + # incompatible with matplotlib 3.5 "TestKDEPlotBivariate" "TestBoxPlotter" "TestCatPlot" "TestKDEPlotUnivariate" "test_with_rug" "test_bivariate_kde_norm" + ] ++ lib.optionals (!stdenv.hostPlatform.isx86) [ + # overly strict float tolerances + "TestDendrogram" ]; - pythonImportsCheck= [ + pythonImportsCheck = [ "seaborn" ]; diff --git a/pkgs/development/python-modules/sharkiqpy/default.nix b/pkgs/development/python-modules/sharkiq/default.nix index 9d696bf0a21..e41205fba73 100644 --- a/pkgs/development/python-modules/sharkiqpy/default.nix +++ b/pkgs/development/python-modules/sharkiq/default.nix @@ -6,12 +6,12 @@ }: buildPythonPackage rec { - pname = "sharkiqpy"; - version = "0.1.9"; + pname = "sharkiq"; + version = "0.0.1"; src = fetchPypi { inherit pname version; - sha256 = "0nk1nbplyk28qadxc7rydjvdgbz3za0xjg6c95l95mhiz453q5sw"; + sha256 = "e5efb0ad13a66cf6a097da5c128347ef7bd0b2abe53a8ca65cbc847ec1190c8b"; }; propagatedBuildInputs = [ @@ -21,12 +21,13 @@ buildPythonPackage rec { # Project has no tests doCheck = false; - pythonImportsCheck = [ "sharkiqpy" ]; + + pythonImportsCheck = [ "sharkiq" ]; meta = with lib; { - description = "Python API for Shark IQ robot"; - homepage = "https://github.com/ajmarks/sharkiq"; - license = with licenses; [ mit ]; + description = "Python API for Shark IQ robots"; + homepage = "https://github.com/JeffResc/sharkiq"; + license = licenses.mit; maintainers = with maintainers; [ fab ]; }; } diff --git a/pkgs/development/python-modules/slack-sdk/default.nix b/pkgs/development/python-modules/slack-sdk/default.nix index 7e80ad35c5c..b3122653a84 100644 --- a/pkgs/development/python-modules/slack-sdk/default.nix +++ b/pkgs/development/python-modules/slack-sdk/default.nix @@ -20,7 +20,7 @@ buildPythonPackage rec { pname = "slack-sdk"; - version = "3.16.1"; + version = "3.16.2"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -29,7 +29,7 @@ buildPythonPackage rec { owner = "slackapi"; repo = "python-slack-sdk"; rev = "refs/tags/v${version}"; - sha256 = "sha256-XTt2R0JypbDGJtiWqFzmui7UVLK4/U46co7LcHkSbWo="; + sha256 = "sha256-xecmza5Zsv6mJ4SCRl5VnGseKJG1yznBbLZ1tyBSjIE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/sphinx/default.nix b/pkgs/development/python-modules/sphinx/default.nix index 020cf5c143a..4639cf43d31 100644 --- a/pkgs/development/python-modules/sphinx/default.nix +++ b/pkgs/development/python-modules/sphinx/default.nix @@ -4,7 +4,7 @@ , pythonOlder , fetchFromGitHub # propagatedBuildInputs -, Babel +, babel , alabaster , docutils , imagesize @@ -51,10 +51,16 @@ buildPythonPackage rec { postPatch = '' substituteInPlace setup.py \ --replace "docutils>=0.14,<0.18" "docutils>=0.14" + + # remove impurity caused by date inclusion + # https://github.com/sphinx-doc/sphinx/blob/master/setup.cfg#L4-L6 + substituteInPlace setup.cfg \ + --replace "tag_build = .dev" "" \ + --replace "tag_date = true" "" ''; propagatedBuildInputs = [ - Babel + babel alabaster docutils imagesize diff --git a/pkgs/development/python-modules/sqlalchemy/default.nix b/pkgs/development/python-modules/sqlalchemy/default.nix index b6e800a7ed3..0bed203007c 100644 --- a/pkgs/development/python-modules/sqlalchemy/default.nix +++ b/pkgs/development/python-modules/sqlalchemy/default.nix @@ -13,11 +13,11 @@ buildPythonPackage rec { pname = "SQLAlchemy"; - version = "1.4.35"; + version = "1.4.36"; src = fetchPypi { inherit pname version; - hash = "sha256-L/yBOwHcZHOZD15XXyEMpawvVGWs45CLeP/W0gBYqrU="; + hash = "sha256-ZGeKwyHWSkWQHvLiRyXsXng/H0pYgwXhlkMUR+es4kM="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/ssh-mitm/default.nix b/pkgs/development/python-modules/ssh-mitm/default.nix index 6973db343f6..2787dda2e74 100644 --- a/pkgs/development/python-modules/ssh-mitm/default.nix +++ b/pkgs/development/python-modules/ssh-mitm/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "ssh-mitm"; - version = "2.0.0"; + version = "2.0.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = pname; repo = pname; rev = version; - hash = "sha256-1Vx68ISsT2Vrzy3YBqDqcGEHXHzdKR8jTtBH9SNXT2s="; + hash = "sha256-90ja1xckGC5W0A6xqeTOlR46QhONxGt4PLlue24DWX0="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/stack-data/default.nix b/pkgs/development/python-modules/stack-data/default.nix index eb9879a4bf0..7f319333cac 100644 --- a/pkgs/development/python-modules/stack-data/default.nix +++ b/pkgs/development/python-modules/stack-data/default.nix @@ -49,8 +49,10 @@ buildPythonPackage rec { disabledTests = [ # AssertionError - "test_variables" "test_example" + "test_executing_style_defs" + "test_pygments_example" + "test_variables" ]; pythonImportsCheck = [ "stack_data" ]; diff --git a/pkgs/development/python-modules/starline/default.nix b/pkgs/development/python-modules/starline/default.nix index 4f4ad545f2d..ce7418a8873 100644 --- a/pkgs/development/python-modules/starline/default.nix +++ b/pkgs/development/python-modules/starline/default.nix @@ -2,23 +2,21 @@ , buildPythonPackage , pythonOlder , fetchPypi -, aiohttp , requests }: buildPythonPackage rec { pname = "starline"; - version = "0.1.5"; + version = "0.2.0"; disabled = pythonOlder "3.5"; src = fetchPypi { inherit pname version; - sha256 = "1753f5fcd2a6976aed775afb03f8392159f040c673917cc0c634510d95c13cb9"; + sha256 = "550b00ab95cf59d933f7708abab40a4e41e5790e62b653471afe86a3af3320e6"; }; propagatedBuildInputs = [ - aiohttp requests ]; diff --git a/pkgs/development/python-modules/steamodd/default.nix b/pkgs/development/python-modules/steamodd/default.nix new file mode 100644 index 00000000000..7db250e5ac3 --- /dev/null +++ b/pkgs/development/python-modules/steamodd/default.nix @@ -0,0 +1,37 @@ +{ lib +, buildPythonPackage +, fetchPypi +}: + +buildPythonPackage rec { + pname = "steamodd"; + version = "4.23"; + + format = "setuptools"; + + src = fetchPypi { + inherit pname version; + sha256 = "b95b288a8249937b9183539eef76563a6b1df286a1db04f25141e46d8814eae9"; + }; + + # tests require API key + doCheck = false; + + pythonImportsCheck = [ + "steam.api" + "steam.apps" + "steam.items" + "steam.loc" + "steam.remote_storage" + "steam.sim" + "steam.user" + "steam.vdf" + ]; + + meta = { + description = "High level Steam API implementation with low level reusable core"; + homepage = "https://github.com/Lagg/steamodd"; + license = lib.licenses.isc; + maintainers = with lib.maintainers; [ dotlambda ]; + }; +} diff --git a/pkgs/development/python-modules/stripe/default.nix b/pkgs/development/python-modules/stripe/default.nix index b47f3917b92..8d6193f8905 100644 --- a/pkgs/development/python-modules/stripe/default.nix +++ b/pkgs/development/python-modules/stripe/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "stripe"; - version = "2.76.0"; + version = "3.1.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-/T/Gk1w7YYmWcZFge2846+SQAFpZC00NQ/vjq6Rd7Kg="; + hash = "sha256-1/pMGFeNJqfn9onlF33Y67R/KHmxwGAZqguIji3Rrrk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/svglib/default.nix b/pkgs/development/python-modules/svglib/default.nix index 145b24e5578..4231c5fd492 100644 --- a/pkgs/development/python-modules/svglib/default.nix +++ b/pkgs/development/python-modules/svglib/default.nix @@ -12,11 +12,11 @@ buildPythonPackage rec { pname = "svglib"; - version = "1.2.1"; + version = "1.3.0"; src = fetchPypi { inherit pname version; - sha256 = "c77a0702fafd367c0fdca08ca1b7e1ee10058bde3bae252f49a3836e51e54519"; + sha256 = "sha256-o4mYuV0buZVk3J3/rxXk6UU3YfJ5DS3UFHpK1fusEHg="; }; disabled = !isPy3k; diff --git a/pkgs/development/python-modules/tempest/default.nix b/pkgs/development/python-modules/tempest/default.nix index 39f7a82cd9e..5a88c7e1222 100644 --- a/pkgs/development/python-modules/tempest/default.nix +++ b/pkgs/development/python-modules/tempest/default.nix @@ -24,7 +24,7 @@ , hacking , oslotest , bash -, python3 +, python }: buildPythonApplication rec { @@ -76,8 +76,8 @@ buildPythonApplication rec { # Tests expect these applications available as such. mkdir -p bin export PATH="$PWD/bin:$PATH" - printf '#!${bash}/bin/bash\nexec ${python3.interpreter} -m tempest.cmd.main "$@"\n' > bin/tempest - printf '#!${bash}/bin/bash\nexec ${python3.interpreter} -m tempest.cmd.subunit_describe_calls "$@"\n' > bin/subunit-describe-calls + printf '#!${bash}/bin/bash\nexec ${python.interpreter} -m tempest.cmd.main "$@"\n' > bin/tempest + printf '#!${bash}/bin/bash\nexec ${python.interpreter} -m tempest.cmd.subunit_describe_calls "$@"\n' > bin/subunit-describe-calls chmod +x bin/* stestr --test-path tempest/tests run -e <(echo " diff --git a/pkgs/development/python-modules/tensorflow-metadata/default.nix b/pkgs/development/python-modules/tensorflow-metadata/default.nix index b39f1211d0c..bdf6cc08aa6 100644 --- a/pkgs/development/python-modules/tensorflow-metadata/default.nix +++ b/pkgs/development/python-modules/tensorflow-metadata/default.nix @@ -8,13 +8,13 @@ buildPythonPackage rec { pname = "tensorflow-metadata"; - version = "1.7.0"; + version = "1.8.0"; src = fetchFromGitHub { owner = "tensorflow"; repo = "metadata"; - rev = "v${version}"; - sha256 = "sha256-CQlLEVNcD9u2pojz8r1eLzYzc9i2hjdZfzfYSQ/8Q4k="; + rev = "refs/tags/v${version}"; + sha256 = "sha256-IaLr6XYEy1EcyWi5GWzDFa7TeVZ59v8Wj5qkNdVbOqw="; }; patches = [ diff --git a/pkgs/development/python-modules/tesla-powerwall/default.nix b/pkgs/development/python-modules/tesla-powerwall/default.nix new file mode 100644 index 00000000000..a2a7b489374 --- /dev/null +++ b/pkgs/development/python-modules/tesla-powerwall/default.nix @@ -0,0 +1,42 @@ +{ lib +, buildPythonPackage +, fetchPypi +, requests +, pytestCheckHook +, responses +}: + +buildPythonPackage rec { + pname = "tesla-powerwall"; + version = "0.3.17"; + + format = "setuptools"; + + src = fetchPypi { + pname = "tesla_powerwall"; + inherit version; + sha256 = "09351e408e8e3cc03414944c1a487ef2178300829559e80835026acb84330cfd"; + }; + + propagatedBuildInputs = [ + requests + ]; + + checkInputs = [ + pytestCheckHook + responses + ]; + + pytestFlagsArray = [ + "tests/unit" + ]; + + pythonImportsCheck = [ "tesla_powerwall" ]; + + meta = { + description = "API for Tesla Powerwall"; + homepage = "https://github.com/jrester/tesla_powerwall"; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ dotlambda ]; + }; +} diff --git a/pkgs/development/python-modules/thinc/default.nix b/pkgs/development/python-modules/thinc/default.nix index a25c8d23567..195f05dc98d 100644 --- a/pkgs/development/python-modules/thinc/default.nix +++ b/pkgs/development/python-modules/thinc/default.nix @@ -30,14 +30,14 @@ buildPythonPackage rec { pname = "thinc"; - version = "8.0.15"; + version = "8.0.16"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-LjFQINqFw3keGR+/N8SiQz9XzzIuJzgNoM1N6Z2WBTs="; + sha256 = "sha256-S8eBpRqHiaxAKzbvLgfRdjbRKniQACdU+NcPBbto31E="; }; postPatch = '' diff --git a/pkgs/development/python-modules/time-machine/default.nix b/pkgs/development/python-modules/time-machine/default.nix index 8ac7f66565b..f840512c7d5 100644 --- a/pkgs/development/python-modules/time-machine/default.nix +++ b/pkgs/development/python-modules/time-machine/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "time-machine"; - version = "2.6.0"; + version = "2.7.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "adamchainz"; repo = pname; rev = version; - sha256 = "sha256-D3cbArF09b5+LkkdosNbYMfndnzCPWwNqzIww23pOtk="; + sha256 = "sha256-d/jUyzqC4weWdY2x6lf85noE/6gNBFhhDfAaYcwB9XQ="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/timetagger/default.nix b/pkgs/development/python-modules/timetagger/default.nix index 80668736158..2158cac9fa3 100644 --- a/pkgs/development/python-modules/timetagger/default.nix +++ b/pkgs/development/python-modules/timetagger/default.nix @@ -1,13 +1,18 @@ { lib -, python3Packages +, buildPythonPackage , fetchFromGitHub +, asgineer +, itemdb +, jinja2 +, markdown +, pscript +, pyjwt +, uvicorn , pytestCheckHook , requests -, pytest -, pythonOlder }: -python3Packages.buildPythonPackage rec { +buildPythonPackage rec { pname = "timetagger"; version = "22.4.2"; @@ -18,7 +23,7 @@ python3Packages.buildPythonPackage rec { sha256 = "sha256-CWY+5O4Y1dvKQNy1Cclqj4+U6q5vVVj9hZq41MYqXKs="; }; - propagatedBuildInputs = with python3Packages; [ + propagatedBuildInputs = [ asgineer itemdb jinja2 @@ -35,12 +40,8 @@ python3Packages.buildPythonPackage rec { checkInputs = [ pytestCheckHook requests - pytest ]; - # fails with `No module named pytest` on python version 3.10 - doCheck = pythonOlder "3.10"; - meta = with lib; { homepage = "https://timetagger.app"; license = licenses.gpl3Only; diff --git a/pkgs/development/python-modules/torchmetrics/default.nix b/pkgs/development/python-modules/torchmetrics/default.nix new file mode 100644 index 00000000000..590f9a83593 --- /dev/null +++ b/pkgs/development/python-modules/torchmetrics/default.nix @@ -0,0 +1,78 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, cloudpickle +, scikit-learn +, scikitimage +, packaging +, psutil +, py-deprecate +, pytorch +, pytestCheckHook +, torchmetrics +, pytorch-lightning +}: + +let + pname = "torchmetrics"; + version = "0.8.2"; +in +buildPythonPackage { + inherit pname version; + + src = fetchFromGitHub { + owner = "PyTorchLightning"; + repo = "metrics"; + rev = "refs/tags/v${version}"; + hash = "sha256-1TO2YgZzjVmrE5jhMwo0Y+bQUQ5jJj34k+kGpdqqPVQ="; + }; + + propagatedBuildInputs = [ + packaging + py-deprecate + ]; + + # Let the user bring their own instance + buildInputs = [ + pytorch + ]; + + checkInputs = [ + pytorch-lightning + scikit-learn + scikitimage + cloudpickle + psutil + pytestCheckHook + ]; + + # A cyclic dependency in: integrations/test_lightning.py + doCheck = false; + passthru.tests.check = torchmetrics.overridePythonAttrs (_: { + doCheck = true; + }); + + disabledTestPaths = [ + # These require too many "leftpad-level" dependencies + "tests/text" + "tests/audio" + "tests/image" + + # A few non-deterministic things like test_check_compute_groups_is_faster + "tests/bases/test_collections.py" + ]; + + pythonImportsCheck = [ + "torchmetrics" + ]; + + meta = with lib; { + description = "Machine learning metrics for distributed, scalable PyTorch applications (used in pytorch-lightning)"; + homepage = "https://torchmetrics.readthedocs.io"; + license = licenses.asl20; + maintainers = with maintainers; [ + SomeoneSerge + ]; + }; +} + diff --git a/pkgs/development/python-modules/trimesh/default.nix b/pkgs/development/python-modules/trimesh/default.nix index 315678b874e..2d021e0a502 100644 --- a/pkgs/development/python-modules/trimesh/default.nix +++ b/pkgs/development/python-modules/trimesh/default.nix @@ -6,11 +6,11 @@ buildPythonPackage rec { pname = "trimesh"; - version = "3.12.0"; + version = "3.12.3"; src = fetchPypi { inherit pname version; - sha256 = "sha256-RcRFF5vIMOQsPXbd2g8DSnOrWnpLLNe3Sa8PqAdwFvU="; + sha256 = "sha256-MrvfSC6Uz/EJXQ3F5jAbWR0YJYRjqjwO7SIe0AUSOfA="; }; propagatedBuildInputs = [ numpy ]; diff --git a/pkgs/development/python-modules/ttp-templates/default.nix b/pkgs/development/python-modules/ttp-templates/default.nix index 46db94782be..45548ee21c2 100644 --- a/pkgs/development/python-modules/ttp-templates/default.nix +++ b/pkgs/development/python-modules/ttp-templates/default.nix @@ -1,11 +1,7 @@ { lib , buildPythonPackage , fetchFromGitHub -, netmiko -, pytestCheckHook -, python , pythonOlder -, ttp }: buildPythonPackage rec { @@ -22,24 +18,14 @@ buildPythonPackage rec { hash = "sha256-Qx+z/srYgD67FjXzYrc8xtA99n8shWK7yWj/r/ETN2U="; }; - propagatedBuildInputs = [ - ttp - ]; + postPatch = '' + # Drop circular dependency on ttp + substituteInPlace setup.py \ + --replace '"ttp>=0.6.0"' "" + ''; - checkInputs = [ - netmiko - pytestCheckHook - ]; - - pythonImportsCheck = [ - "ttp_templates" - ]; - - pytestFlagsArray = [ - # The other tests requires data which is no part of the source - "test/test_ttp_templates_methods.py" - "test/test_yang_openconfig_lldp.py" - ]; + # Circular dependency on ttp + doCheck = false; meta = with lib; { description = "Template Text Parser Templates collections"; diff --git a/pkgs/development/python-modules/ttp/default.nix b/pkgs/development/python-modules/ttp/default.nix index 2157af31811..a484ed9f76a 100644 --- a/pkgs/development/python-modules/ttp/default.nix +++ b/pkgs/development/python-modules/ttp/default.nix @@ -1,22 +1,20 @@ { lib , buildPythonPackage -, callPackage -, fetchFromGitHub , cerberus , configparser , deepdiff +, fetchFromGitHub , geoip2 , jinja2 +, netmiko , openpyxl -, tabulate -, yangson , pytestCheckHook , pyyaml +, tabulate +, ttp-templates +, yangson }: -let - ttp_templates = callPackage ./templates.nix { }; -in buildPythonPackage rec { pname = "ttp"; version = "0.8.4"; @@ -26,7 +24,7 @@ buildPythonPackage rec { owner = "dmulyalin"; repo = pname; rev = version; - sha256 = "sha256-vuKlddqm8KirqAJyvBPfRb5Nw9zo4Fl1bwbfVMhmH9g="; + hash = "sha256-vuKlddqm8KirqAJyvBPfRb5Nw9zo4Fl1bwbfVMhmH9g="; }; propagatedBuildInputs = [ @@ -37,7 +35,7 @@ buildPythonPackage rec { geoip2 jinja2 # n2g unpackaged - # netmiko unpackaged + netmiko # nornir unpackaged openpyxl tabulate @@ -51,7 +49,7 @@ buildPythonPackage rec { checkInputs = [ pytestCheckHook pyyaml - ttp_templates + ttp-templates ]; disabledTestPaths = [ @@ -87,6 +85,8 @@ buildPythonPackage rec { "test_TTP_CACHE_FOLDER_env_variable_usage" # requires additional network setup "test_child_group_do_not_start_if_no_parent_started" + # Assertion Error + "test_in_threads_parsing" ]; pytestFlagsArray = [ diff --git a/pkgs/development/python-modules/ttp/templates.nix b/pkgs/development/python-modules/ttp/templates.nix deleted file mode 100644 index 835548d0784..00000000000 --- a/pkgs/development/python-modules/ttp/templates.nix +++ /dev/null @@ -1,31 +0,0 @@ -{ lib -, buildPythonPackage -, fetchPypi -}: - -buildPythonPackage rec { - pname = "ttp-templates"; - version = "0.1.1"; - format = "setuptools"; - - src = fetchPypi { - pname = "ttp_templates"; - inherit version; - sha256 = "0vg7k733i8jqnfz8mpq8kzr2l7b7drk29zkzik91029f6w7li007"; - }; - - # drop circular dependency on ttp - postPatch = '' - substituteInPlace setup.py --replace '"ttp>=0.6.0"' "" - ''; - - # circular dependency on ttp - doCheck = false; - - meta = with lib; { - description = "Template Text Parser Templates"; - homepage = "https://github.com/dmulyalin/ttp_templates"; - license = licenses.mit; - maintainers = with maintainers; [ hexa ]; - }; -} diff --git a/pkgs/development/python-modules/tweepy/default.nix b/pkgs/development/python-modules/tweepy/default.nix index bcb6fbd3b06..f837527be60 100644 --- a/pkgs/development/python-modules/tweepy/default.nix +++ b/pkgs/development/python-modules/tweepy/default.nix @@ -1,5 +1,6 @@ { lib , aiohttp +, async-lru , buildPythonPackage , fetchFromGitHub , oauthlib @@ -12,20 +13,21 @@ buildPythonPackage rec { pname = "tweepy"; - version = "4.9.0"; + version = "4.10.0"; format = "setuptools"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "refs/tags/v${version}"; - hash = "sha256-BMRRunPRDW5J/7KU+pr2Uv9Qa6oHBwkA7tsGa5YdzLw="; + hash = "sha256-D/cArsGzWr+rCC9iW9qOfc5fT7UKZDupeR/rQMNK5I4="; }; propagatedBuildInputs = [ aiohttp + async-lru oauthlib requests requests-oauthlib @@ -41,8 +43,8 @@ buildPythonPackage rec { ]; meta = with lib; { - homepage = "https://github.com/tweepy/tweepy"; description = "Twitter library for Python"; + homepage = "https://github.com/tweepy/tweepy"; license = licenses.mit; maintainers = with maintainers; [ ]; }; diff --git a/pkgs/development/python-modules/twentemilieu/default.nix b/pkgs/development/python-modules/twentemilieu/default.nix index 382e90e14c8..39f8629a5b1 100644 --- a/pkgs/development/python-modules/twentemilieu/default.nix +++ b/pkgs/development/python-modules/twentemilieu/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "twentemilieu"; - version = "0.6.0"; + version = "0.6.1"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "frenck"; repo = "python-twentemilieu"; rev = "v${version}"; - sha256 = "sha256-UE7fhbSThXmMns1XfUUQqw0wn5/w/x+UncansIBiank="; + sha256 = "sha256-k2jdw2H/bNejNUjIEQlEA1KkHHpkyFlSDC1HKUoMIqQ="; }; postPatch = '' diff --git a/pkgs/development/python-modules/twilio/default.nix b/pkgs/development/python-modules/twilio/default.nix index 13bbff916cf..75549030f6e 100644 --- a/pkgs/development/python-modules/twilio/default.nix +++ b/pkgs/development/python-modules/twilio/default.nix @@ -1,19 +1,17 @@ { lib , buildPythonPackage , fetchFromGitHub -, pythonOlder - +, mock , pyjwt +, pytestCheckHook +, pythonOlder , pytz , requests - -, mock -, pytestCheckHook }: buildPythonPackage rec { pname = "twilio"; - version = "7.8.0"; + version = "7.9.1"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -22,7 +20,7 @@ buildPythonPackage rec { owner = "twilio"; repo = "twilio-python"; rev = "refs/tags/${version}"; - sha256 = "sha256-r28iKUv+i8D6JLvsJA7x8T2KFzK26limIwqsXC5jjSE="; + hash = "sha256-oi8LqyeqN8gn06B/m1wNI9iNu7hU3NrdkL7xTsImYPI="; }; propagatedBuildInputs = [ @@ -36,6 +34,12 @@ buildPythonPackage rec { pytestCheckHook ]; + disabledTests = [ + # Tests require network access + "test_set_default_user_agent" + "test_set_user_agent_extensions" + ]; + pythonImportsCheck = [ "twilio" ]; @@ -44,6 +48,6 @@ buildPythonPackage rec { description = "Twilio API client and TwiML generator"; homepage = "https://github.com/twilio/twilio-python/"; license = licenses.mit; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ fab ]; }; } diff --git a/pkgs/development/python-modules/types-dateutil/default.nix b/pkgs/development/python-modules/types-dateutil/default.nix index e8cf1edbde5..c5f7b9041c9 100644 --- a/pkgs/development/python-modules/types-dateutil/default.nix +++ b/pkgs/development/python-modules/types-dateutil/default.nix @@ -5,12 +5,12 @@ buildPythonPackage rec { pname = "types-python-dateutil"; - version = "2.8.15"; + version = "2.8.16"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "sha256-fbHk7UkWvRKMvuPuze4OBsxWhNoqHN/Vf5hUHN++CGE="; + sha256 = "sha256-OqrEwTjra47LwlUJluwl1uRbXTKIfR5pPQhC7i+mWdI="; }; pythonImportsCheck = [ "dateutil-stubs" ]; diff --git a/pkgs/development/python-modules/types-docutils/default.nix b/pkgs/development/python-modules/types-docutils/default.nix new file mode 100644 index 00000000000..ed7e9126a84 --- /dev/null +++ b/pkgs/development/python-modules/types-docutils/default.nix @@ -0,0 +1,29 @@ +{ lib +, buildPythonPackage +, fetchPypi +}: + +buildPythonPackage rec { + pname = "types-docutils"; + version = "0.18.3"; + format = "setuptools"; + + src = fetchPypi { + inherit pname version; + hash = "sha256-oO+DHcIGNfNQ+pz/WRIxwx0n51dx5Z/WyXm2wMfgMpI="; + }; + + # Module doesn't have tests + doCheck = false; + + pythonImportsCheck = [ + "docutils-stubs" + ]; + + meta = with lib; { + description = "Typing stubs for docutils"; + homepage = "https://github.com/python/typeshed"; + license = licenses.asl20; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/types-requests/default.nix b/pkgs/development/python-modules/types-requests/default.nix index bb7e12d5963..96d009a0b47 100644 --- a/pkgs/development/python-modules/types-requests/default.nix +++ b/pkgs/development/python-modules/types-requests/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "types-requests"; - version = "2.27.25"; + version = "2.27.27"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "sha256-gFrn44/Z0VcVMGbcQ4HPWF/TTfohLy/B/s4kjAWqxXE="; + sha256 = "sha256-1hjZgJ+jL1FM8XzqhGCBTaZxxWNm+xyQiszKi/GDESs="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/uamqp/darwin-azure-c-shared-utility-corefoundation.patch b/pkgs/development/python-modules/uamqp/darwin-azure-c-shared-utility-corefoundation.patch new file mode 100644 index 00000000000..ad2186543f3 --- /dev/null +++ b/pkgs/development/python-modules/uamqp/darwin-azure-c-shared-utility-corefoundation.patch @@ -0,0 +1,37 @@ +From 52ab2095649b5951e6af77f68954209473296983 Mon Sep 17 00:00:00 2001 +From: Sandro <sandro.jaeckel@gmail.com> +Date: Sat, 16 Jan 2021 15:54:05 +0100 +Subject: [PATCH] Fix finding apple libraries + +--- + CMakeLists.txt | 5 +++-- + 1 file changed, 3 insertions(+), 2 deletions(-) + + +(rejected by upstream in https://github.com/Azure/azure-c-shared-utility/pull/499, +seems problem it's solving is nixpkgs-specific) + +diff --git a/src/vendor/azure-uamqp-c/deps/azure-c-shared-utility/CMakeLists.txt b/src/vendor/azure-uamqp-c/deps/azure-c-shared-utility/CMakeLists.txt +index 7bbfa6f3f..3567b18bc 100644 +--- a/src/vendor/azure-uamqp-c/deps/azure-c-shared-utility/CMakeLists.txt ++++ b/src/vendor/azure-uamqp-c/deps/azure-c-shared-utility/CMakeLists.txt +@@ -120,8 +120,9 @@ endif() + + if(${use_applessl}) + # MACOSX only has native tls and open ssl, so use the native apple tls +- find_library(cf_foundation Foundation) ++ find_library(cf_foundation CoreFoundation) + find_library(cf_network CFNetwork) ++ find_library(cf_security Security) + endif() + + if(${no_logging}) +@@ -581,7 +582,7 @@ endif() + + + if(${use_applessl}) +- set(aziotsharedutil_target_libs ${aziotsharedutil_target_libs} ${cf_foundation} ${cf_network}) ++ set(aziotsharedutil_target_libs ${aziotsharedutil_target_libs} ${cf_foundation} ${cf_network} ${cf_security}) + endif() + + if(WIN32) diff --git a/pkgs/development/python-modules/uamqp/default.nix b/pkgs/development/python-modules/uamqp/default.nix index a838f44eb95..61979da58d4 100644 --- a/pkgs/development/python-modules/uamqp/default.nix +++ b/pkgs/development/python-modules/uamqp/default.nix @@ -23,6 +23,10 @@ buildPythonPackage rec { sha256 = "sha256-guhfOMvddC4E+oOmvpeG8GsXEfqLcSHVdtj3w8fF2Vs="; }; + patches = lib.optionals (stdenv.isDarwin && stdenv.isx86_64) [ + ./darwin-azure-c-shared-utility-corefoundation.patch + ]; + nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/python-modules/urlextract/default.nix b/pkgs/development/python-modules/urlextract/default.nix index 8d2c62de4e8..ce520ba1cca 100644 --- a/pkgs/development/python-modules/urlextract/default.nix +++ b/pkgs/development/python-modules/urlextract/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "urlextract"; - version = "1.5.0"; + version = "1.6.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-QKXIQ9HXJTdY9W8NZ0jF6iekoUVl46kvJakW3cTB5B8="; + hash = "sha256-V08NjFYtN3M2pRVIQMfk7s9UwQKlOJcciX9zEwdaiIc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/validphys2/default.nix b/pkgs/development/python-modules/validphys2/default.nix new file mode 100644 index 00000000000..d434cbcc621 --- /dev/null +++ b/pkgs/development/python-modules/validphys2/default.nix @@ -0,0 +1,37 @@ +{ lib +, buildPythonPackage +, nnpdf +, reportengine +}: + +buildPythonPackage rec { + pname = "validphys2"; + version = "4.0"; + format = "setuptools"; + + inherit (nnpdf) src; + + prePatch = '' + cd validphys2 + ''; + + postPatch = '' + substituteInPlace src/validphys/version.py \ + --replace '= __give_git()' '= "${version}"' + ''; + + propagatedBuildInputs = [ + nnpdf + reportengine + ]; + + doCheck = false; # no tests + pythonImportsCheck = [ "validphys" ]; + + meta = with lib; { + description = "NNPDF analysis framework"; + homepage = "https://data.nnpdf.science/validphys-docs/guide.html"; + inherit (nnpdf.meta) license; + maintainers = with maintainers; [ veprbl ]; + }; +} diff --git a/pkgs/development/python-modules/vallox-websocket-api/default.nix b/pkgs/development/python-modules/vallox-websocket-api/default.nix new file mode 100644 index 00000000000..53af2f0dd9f --- /dev/null +++ b/pkgs/development/python-modules/vallox-websocket-api/default.nix @@ -0,0 +1,42 @@ +{ lib +, buildPythonPackage +, pythonOlder +, fetchFromGitHub +, construct +, websockets +, asynctest +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "vallox-websocket-api"; + version = "2.11.0"; + + disabled = pythonOlder "3.6"; + + format = "setuptools"; + + src = fetchFromGitHub { + owner = "yozik04"; + repo = "vallox_websocket_api"; + rev = version; + hash = "sha256-wZiPrPl9ESp43PFdRPvqB2nOg+ogfaArunZOR3Q9cvs="; + }; + + propagatedBuildInputs = [ + construct + websockets + ]; + + checkInputs = [ + asynctest + pytestCheckHook + ]; + + meta = { + description = "Async API for Vallox ventilation units"; + homepage = "https://github.com/yozik04/vallox_websocket_api"; + license = lib.licenses.lgpl3Only; + maintainers = with lib.maintainers; [ dotlambda ]; + }; +} diff --git a/pkgs/development/python-modules/velbus-aio/default.nix b/pkgs/development/python-modules/velbus-aio/default.nix index efa5a0fc29f..84e1bac0304 100644 --- a/pkgs/development/python-modules/velbus-aio/default.nix +++ b/pkgs/development/python-modules/velbus-aio/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "velbus-aio"; - version = "2022.2.4"; + version = "2022.5.1"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "Cereal2nd"; repo = pname; rev = version; - sha256 = "sha256-oWHyEw1DjMynLPAARcVaqsFccpnTk1/7gpq+8TU95d0="; + sha256 = "sha256-XdPrKNUvAHsqw3nv7Ws2zBYDBqEOEeEUHLdB2+f+p+w="; fetchSubmodules = true; }; diff --git a/pkgs/development/python-modules/watchfiles/default.nix b/pkgs/development/python-modules/watchfiles/default.nix new file mode 100644 index 00000000000..9735b188594 --- /dev/null +++ b/pkgs/development/python-modules/watchfiles/default.nix @@ -0,0 +1,68 @@ +{ lib +, anyio +, buildPythonPackage +, fetchFromGitHub +, rustPlatform +, setuptools-rust +, pythonOlder +, dirty-equals +, pytest-mock +, pytest-timeout +, pytestCheckHook +, python +}: + +buildPythonPackage rec { + pname = "watchfiles"; + version = "0.14.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "samuelcolvin"; + repo = pname; + rev = "v${version}"; + hash = "sha256-XjmmyL7ZRqkYwGGk6/KkxL7e/JA43tQN4W3knTtc7t0="; + }; + + cargoDeps = rustPlatform.fetchCargoTarball { + inherit src; + name = "${pname}-${version}"; + sha256 = "sha256-sZMj1HQ37gAG3WM+qBMhcCQ2MuUGom23lF8c4L0RQzM="; + }; + + nativeBuildInputs = [ + setuptools-rust + ] ++ (with rustPlatform; [ + cargoSetupHook + rust.cargo + rust.rustc + ]); + + propagatedBuildInputs = [ + anyio + ]; + + checkInputs = [ + dirty-equals + pytest-mock + pytest-timeout + pytestCheckHook + ]; + + pythonImportsCheck = [ + "watchfiles" + ]; + + preCheck = '' + cd tests + ''; + + meta = with lib; { + description = "Simple, modern file watching and code reload"; + homepage = "https://watchfiles.helpmanual.io/"; + license = licenses.mit; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/wcag-contrast-ratio/default.nix b/pkgs/development/python-modules/wcag-contrast-ratio/default.nix new file mode 100644 index 00000000000..c7b7e9bc9e8 --- /dev/null +++ b/pkgs/development/python-modules/wcag-contrast-ratio/default.nix @@ -0,0 +1,34 @@ +{ lib +, buildPythonPackage +, fetchPypi +, hypothesis +, pytestCheckHook +}: + +buildPythonPackage rec { + pname = "wcag-contrast-ratio"; + version = "0.9"; + + src = fetchPypi { + inherit pname version; + sha256 = "sha256-aRkrjlwKfQ3F/xGH7rPjmBQWM6S95RxpyH9Y/oftNhw="; + }; + + checkInputs = [ + hypothesis + pytestCheckHook + ]; + + pytestFlagsArray = [ + "test.py" + ]; + + pythonImportsCheck = [ "wcag_contrast_ratio" ]; + + meta = with lib; { + description = "Library for computing contrast ratios, as required by WCAG 2.0"; + homepage = "https://github.com/gsnedders/wcag-contrast-ratio"; + license = licenses.mit; + maintainers = with maintainers; [ SuperSandro2000 ]; + }; +} diff --git a/pkgs/development/python-modules/weboob/default.nix b/pkgs/development/python-modules/weboob/default.nix index 4d0373105cc..094dcb3bfbd 100644 --- a/pkgs/development/python-modules/weboob/default.nix +++ b/pkgs/development/python-modules/weboob/default.nix @@ -1,5 +1,5 @@ { lib -, Babel +, babel , buildPythonPackage , cssselect , feedparser @@ -43,7 +43,7 @@ buildPythonPackage rec { ]; propagatedBuildInputs = [ - Babel + babel cssselect python-dateutil feedparser diff --git a/pkgs/development/python-modules/werkzeug/1.nix b/pkgs/development/python-modules/werkzeug/1.nix deleted file mode 100644 index ae7ce1f2b90..00000000000 --- a/pkgs/development/python-modules/werkzeug/1.nix +++ /dev/null @@ -1,62 +0,0 @@ -{ lib, stdenv, buildPythonPackage, fetchPypi -, itsdangerous, hypothesis -, pytestCheckHook, requests -, pytest-timeout -, isPy3k - }: - -buildPythonPackage rec { - pname = "Werkzeug"; - version = "1.0.1"; - - src = fetchPypi { - inherit pname version; - sha256 = "6c80b1e5ad3665290ea39320b91e1be1e0d5f60652b964a3070216de83d2e47c"; - }; - - propagatedBuildInputs = [ itsdangerous ]; - checkInputs = [ pytestCheckHook requests hypothesis pytest-timeout ]; - - postPatch = '' - # ResourceWarning causes tests to fail - rm tests/test_routing.py - ''; - - disabledTests = [ - "test_save_to_pathlib_dst" - "test_cookie_maxsize" - "test_cookie_samesite_attribute" - "test_cookie_samesite_invalid" - "test_range_parsing" - "test_content_range_parsing" - "test_http_date_lt_1000" - "test_best_match_works" - "test_date_to_unix" - "test_easteregg" - - # Seems to be a problematic test-case: - # - # > warnings.warn(pytest.PytestUnraisableExceptionWarning(msg)) - # E pytest.PytestUnraisableExceptionWarning: Exception ignored in: <_io.FileIO [closed]> - # E - # E Traceback (most recent call last): - # E File "/nix/store/cwv8aj4vsqvimzljw5dxsxy663vjgibj-python3.9-Werkzeug-1.0.1/lib/python3.9/site-packages/werkzeug/formparser.py", line 318, in parse_multipart_headers - # E return Headers(result) - # E ResourceWarning: unclosed file <_io.FileIO name=11 mode='rb+' closefd=True> - "test_basic_routing" - "test_merge_slashes_match" - "test_merge_slashes_build" - "TestMultiPart" - "TestHTTPUtility" - ] ++ lib.optionals stdenv.isDarwin [ - "test_get_machine_id" - ]; - - meta = with lib; { - homepage = "https://palletsprojects.com/p/werkzeug/"; - description = "A WSGI utility library for Python"; - license = licenses.bsd3; - maintainers = [ ]; - }; -} - diff --git a/pkgs/development/python-modules/werkzeug/default.nix b/pkgs/development/python-modules/werkzeug/default.nix index f961d0359db..aaaecc6098f 100644 --- a/pkgs/development/python-modules/werkzeug/default.nix +++ b/pkgs/development/python-modules/werkzeug/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "werkzeug"; - version = "2.1.0"; + version = "2.1.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "Werkzeug"; inherit version; - sha256 = "sha256-m1VGaj6Z4TsfBoamYRfTm9qFqZIWbgp5rt/PNYYyj3o="; + sha256 = "sha256-HOCOgJPtZ9Y41jh5/Rujc1gX96gN42dNKT9ZhPJftuY="; }; propagatedBuildInputs = lib.optionals (!stdenv.isDarwin) [ @@ -63,6 +63,6 @@ buildPythonPackage rec { utility libraries. ''; license = licenses.bsd3; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ SuperSandro2000 ]; }; } diff --git a/pkgs/development/python-modules/whois/default.nix b/pkgs/development/python-modules/whois/default.nix index b2875819646..7f51e2c61ef 100644 --- a/pkgs/development/python-modules/whois/default.nix +++ b/pkgs/development/python-modules/whois/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "whois"; - version = "0.9.14"; + version = "0.9.15"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -15,8 +15,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "DannyCork"; repo = "python-whois"; - rev = version; - sha256 = "1df4r2pr356y1c2ys6pzdl93fmx9ci4y75xphc95xn27zvqbpvix"; + rev = "refs/tags/${version}"; + sha256 = "sha256-Pfogvo0s678KHO85r4yopEaL4n/2cIY1+CnQu3iB8xc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/woob/default.nix b/pkgs/development/python-modules/woob/default.nix index 3c9529c2644..a681b523a32 100644 --- a/pkgs/development/python-modules/woob/default.nix +++ b/pkgs/development/python-modules/woob/default.nix @@ -1,5 +1,5 @@ { lib -, Babel +, babel , buildPythonPackage , colorama , cssselect @@ -45,7 +45,7 @@ buildPythonPackage rec { ]; propagatedBuildInputs = [ - Babel + babel colorama cssselect python-dateutil diff --git a/pkgs/development/python-modules/wtforms/default.nix b/pkgs/development/python-modules/wtforms/default.nix index 48764d509fe..95f9d2df65c 100644 --- a/pkgs/development/python-modules/wtforms/default.nix +++ b/pkgs/development/python-modules/wtforms/default.nix @@ -2,7 +2,7 @@ , buildPythonPackage , fetchPypi , markupsafe -, Babel +, babel , pytestCheckHook , email_validator }: @@ -16,7 +16,7 @@ buildPythonPackage rec { sha256 = "1g654ghavds387hqxmhg9s8x222x89wbq1ggzxbsyn6x2axindbb"; }; - propagatedBuildInputs = [ markupsafe Babel ]; + propagatedBuildInputs = [ markupsafe babel ]; checkInputs = [ diff --git a/pkgs/development/python-modules/xdot/default.nix b/pkgs/development/python-modules/xdot/default.nix index fa24256b6a0..a07235006c9 100644 --- a/pkgs/development/python-modules/xdot/default.nix +++ b/pkgs/development/python-modules/xdot/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, isPy3k, python3, xvfb-run +{ lib, buildPythonPackage, fetchPypi, isPy3k, python, xvfb-run , wrapGAppsHook, gobject-introspection, pygobject3, graphviz, gtk3, numpy }: buildPythonPackage rec { @@ -20,7 +20,7 @@ buildPythonPackage rec { ''; checkPhase = '' - xvfb-run -s '-screen 0 800x600x24' ${python3.interpreter} nix_run_setup test + xvfb-run -s '-screen 0 800x600x24' ${python.interpreter} nix_run_setup test ''; # https://github.com/NixOS/nixpkgs/pull/107872#issuecomment-752175866 diff --git a/pkgs/development/python-modules/xknx/default.nix b/pkgs/development/python-modules/xknx/default.nix index 315ba9416d5..87a0fd54d2d 100644 --- a/pkgs/development/python-modules/xknx/default.nix +++ b/pkgs/development/python-modules/xknx/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "xknx"; - version = "0.21.2"; + version = "0.21.3"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "XKNX"; repo = pname; rev = "refs/tags/${version}"; - sha256 = "sha256-GEjrqqmlGA6wG5x89AZXd8FLvrKEzCLmVhhZ7FxDB+w="; + sha256 = "sha256-AGKozbVdXfRPvaU1Et8GFu3vdNRLA8ZiV8Xc6T7BhOQ="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/xmlschema/default.nix b/pkgs/development/python-modules/xmlschema/default.nix index 8616463915e..4e47ef7b6dc 100644 --- a/pkgs/development/python-modules/xmlschema/default.nix +++ b/pkgs/development/python-modules/xmlschema/default.nix @@ -8,7 +8,7 @@ }: buildPythonPackage rec { - version = "1.10.0"; + version = "1.11.0"; pname = "xmlschema"; disabled = pythonOlder "3.6"; @@ -16,8 +16,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "sissaschool"; repo = "xmlschema"; - rev = "v${version}"; - sha256 = "sha256-er6+/2fZTw+CDIwCGqTNoXi7KJ3XOsbcWYaH8A2SSgo="; + rev = "refs/tags/v${version}"; + sha256 = "sha256-WnX4MmrHHELzUcUnP34A+kK0x4ARm6qrEN7+KQk9/Ts="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/zipp/default.nix b/pkgs/development/python-modules/zipp/default.nix index 0f64df2a56a..253962910ac 100644 --- a/pkgs/development/python-modules/zipp/default.nix +++ b/pkgs/development/python-modules/zipp/default.nix @@ -1,12 +1,13 @@ { lib , buildPythonPackage , fetchPypi -, more-itertools +, func-timeout +, jaraco_itertools , pythonOlder , setuptools-scm }: -buildPythonPackage rec { +let zipp = buildPythonPackage rec { pname = "zipp"; version = "3.7.0"; format = "setuptools"; @@ -22,21 +23,26 @@ buildPythonPackage rec { setuptools-scm ]; - propagatedBuildInputs = [ - more-itertools - ]; - # Prevent infinite recursion with pytest doCheck = false; + checkInputs = [ + func-timeout + jaraco_itertools + ]; + pythonImportsCheck = [ "zipp" ]; + passthru.tests = { + check = zipp.overridePythonAttrs (_: { doCheck = true; }); + }; + meta = with lib; { description = "Pathlib-compatible object wrapper for zip files"; homepage = "https://github.com/jaraco/zipp"; license = licenses.mit; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ SuperSandro2000 ]; }; -} +}; in zipp diff --git a/pkgs/development/python2-modules/sphinx/default.nix b/pkgs/development/python2-modules/sphinx/default.nix index 0424b9b4c39..80dec053108 100644 --- a/pkgs/development/python2-modules/sphinx/default.nix +++ b/pkgs/development/python2-modules/sphinx/default.nix @@ -13,7 +13,7 @@ , jinja2 , pygments , alabaster -, Babel +, babel , snowballstemmer , six , sqlalchemy @@ -46,7 +46,7 @@ buildPythonPackage rec { jinja2 pygments alabaster - Babel + babel setuptools snowballstemmer six diff --git a/pkgs/development/r-modules/bioc-annotation-packages.nix b/pkgs/development/r-modules/bioc-annotation-packages.nix index a4bb9dac14d..b884ef7c4b8 100644 --- a/pkgs/development/r-modules/bioc-annotation-packages.nix +++ b/pkgs/development/r-modules/bioc-annotation-packages.nix @@ -4,14 +4,14 @@ # Rscript generate-r-packages.R bioc-annotation >new && mv new bioc-annotation-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.14"; }; +let derive2 = derive { biocVersion = "3.15"; }; in with self; { AHCytoBands = derive2 { name="AHCytoBands"; version="0.99.1"; sha256="0svxxhj3mh5gqik45ikcxnlhnma8n1c0rv8pycj2034cb9ms1dbv"; depends=[]; }; - AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.1.4"; sha256="1s6z7cy4fx1w37w9j3315v8v7blip98kiv5wxgqfvsy98irxk58r"; depends=[AnnotationHubData ensembldb]; }; - AHLRBaseDbs = derive2 { name="AHLRBaseDbs"; version="1.2.0"; sha256="0x82jcvza2vy0vi8pl0c55nsggpbrfgfxvqli38q29km8cdqcxmi"; depends=[AnnotationHub]; }; - AHMeSHDbs = derive2 { name="AHMeSHDbs"; version="1.2.0"; sha256="12a8wh671zvwknr47cbcmijpwjm13wyd7plmifkdpj0vqgc78q0a"; depends=[AnnotationHub]; }; + AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.1.6"; sha256="0yn1ijlbfk2v0fnr124lh7ak1qsb8m6ipy2xwkpvbrk1v94zcaph"; depends=[AnnotationHubData ensembldb]; }; + AHLRBaseDbs = derive2 { name="AHLRBaseDbs"; version="1.4.0"; sha256="15wlnzwa1zqxlzqk90fid7g2631q91n3y117wsk2h1prmgb64j7l"; depends=[AnnotationHub]; }; + AHMeSHDbs = derive2 { name="AHMeSHDbs"; version="1.4.0"; sha256="1nx9qx0kqqkblgcl03p5zdjlzkwpwgzrw9zaywz2nb2318219n3d"; depends=[AnnotationHub]; }; AHPathbankDbs = derive2 { name="AHPathbankDbs"; version="0.99.5"; sha256="10wcrglm521xcrfbzc39dkbjvg1pkz0zq70vgnh68akiwmdirp89"; depends=[AnnotationHub]; }; - AHPubMedDbs = derive2 { name="AHPubMedDbs"; version="1.2.0"; sha256="1lw5z7dblczmsz5mkq1fh51y82j23kbb1hkk14r27y863n22f2by"; depends=[AnnotationHub]; }; + AHPubMedDbs = derive2 { name="AHPubMedDbs"; version="1.4.0"; sha256="1rmy4gdb5rgh7pr2fdxn55cnhdwsb1b7c9ph97ax82a30japvsa1"; depends=[AnnotationHub]; }; AHWikipathwaysDbs = derive2 { name="AHWikipathwaysDbs"; version="0.99.4"; sha256="0vz3p9sx36bwzl9rq0ffh7klbq13pv2yhgjq1cjk7ll8z226c0q4"; depends=[AnnotationHub]; }; BSgenome_Alyrata_JGI_v1 = derive2 { name="BSgenome.Alyrata.JGI.v1"; version="1.0.1"; sha256="062ap94m6s4w8clg1zlj223wmgbmq19yhksx9fcdcqrxr5kbfv85"; depends=[BSgenome]; }; BSgenome_Amellifera_BeeBase_assembly4 = derive2 { name="BSgenome.Amellifera.BeeBase.assembly4"; version="1.4.0"; sha256="02zs16q441zcbfp7xvv1gny5nn02ivfr8md1wh5s5rpnj6sdl6kj"; depends=[BSgenome]; }; @@ -40,6 +40,8 @@ in with self; { BSgenome_Cfamiliaris_UCSC_canFam3 = derive2 { name="BSgenome.Cfamiliaris.UCSC.canFam3"; version="1.4.0"; sha256="1ir092yh1h03ag1lnj2rh5hjp2mqrw7fcyb6mqyjm0h8g1pmpicr"; depends=[BSgenome]; }; BSgenome_Cfamiliaris_UCSC_canFam3_masked = derive2 { name="BSgenome.Cfamiliaris.UCSC.canFam3.masked"; version="1.3.99"; sha256="07y28g6b4sbp38yg5rwldda7s1cwcpil6rzsb4csskvs0xi5286l"; depends=[BSgenome BSgenome_Cfamiliaris_UCSC_canFam3]; }; BSgenome_Cjacchus_UCSC_calJac3 = derive2 { name="BSgenome.Cjacchus.UCSC.calJac3"; version="1.4.2"; sha256="1s1srg6lr3dndbpv83bqlxz5lhyhxh431yrd919yl4fwmr5rvx0z"; depends=[BSgenome]; }; + BSgenome_Cjacchus_UCSC_calJac4 = derive2 { name="BSgenome.Cjacchus.UCSC.calJac4"; version="1.5.0"; sha256="0hfrcsarcm65hqr6032aar1rz09pvj22wj5dlmy459cqrpgr5prf"; depends=[BSgenome]; }; + BSgenome_CneoformansVarGrubiiKN99_NCBI_ASM221672v1 = derive2 { name="BSgenome.CneoformansVarGrubiiKN99.NCBI.ASM221672v1"; version="1.0.0"; sha256="0hmxpm9mj8ahmpk2xp0qgsblvjz7wjcdmsz41ab5s404ggiylx79"; depends=[BSgenome]; }; BSgenome_Creinhardtii_JGI_v5_6 = derive2 { name="BSgenome.Creinhardtii.JGI.v5.6"; version="1.5.0"; sha256="0px1p3hgbpk3pvmg77knqxwmh1jd8jjf763kzxf0725pnl9dca2v"; depends=[BSgenome]; }; BSgenome_Dmelanogaster_UCSC_dm2 = derive2 { name="BSgenome.Dmelanogaster.UCSC.dm2"; version="1.4.0"; sha256="1vnqbm1123zmpn1iwyygr1p4js0j6vifyz7iwzgkiw543yb1mwnl"; depends=[BSgenome]; }; BSgenome_Dmelanogaster_UCSC_dm2_masked = derive2 { name="BSgenome.Dmelanogaster.UCSC.dm2.masked"; version="1.3.99"; sha256="1qclf62c3qrdhnrb6p4rhj7wrarlsbm716d37k0gbdzkfm2vhyr7"; depends=[BSgenome BSgenome_Dmelanogaster_UCSC_dm2]; }; @@ -66,6 +68,7 @@ in with self; { BSgenome_Ggallus_UCSC_galGal6 = derive2 { name="BSgenome.Ggallus.UCSC.galGal6"; version="1.4.2"; sha256="00b0awki35xkfjsvv9x1h0sykg5jbf36a37hj4spw028bkg8k7v2"; depends=[BSgenome]; }; BSgenome_Hsapiens_1000genomes_hs37d5 = derive2 { name="BSgenome.Hsapiens.1000genomes.hs37d5"; version="0.99.1"; sha256="1cg0g5fqmsvwyw2p9hp2yy4ilk21jkbbrnpgqvb5c36ihjwvc7sr"; depends=[BSgenome]; }; BSgenome_Hsapiens_NCBI_GRCh38 = derive2 { name="BSgenome.Hsapiens.NCBI.GRCh38"; version="1.3.1000"; sha256="0y75qdq578fh6420vbvsbwmdw8jvr3g06qli2h3vj3pxmjykh9c1"; depends=[BSgenome]; }; + BSgenome_Hsapiens_NCBI_T2T_CHM13v2_0 = derive2 { name="BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0"; version="1.5.0"; sha256="080zq71fl1cx7sxi2il5v0mfj79hw93qy3fr1514fax8vslh5lfz"; depends=[BSgenome]; }; BSgenome_Hsapiens_UCSC_hg17 = derive2 { name="BSgenome.Hsapiens.UCSC.hg17"; version="1.3.1000"; sha256="1q8p0zp5xpp22znwnygl3jhc159db4q3kkpj5wfij5a6z19zs1w3"; depends=[BSgenome]; }; BSgenome_Hsapiens_UCSC_hg17_masked = derive2 { name="BSgenome.Hsapiens.UCSC.hg17.masked"; version="1.3.99"; sha256="1pg39kmbmnync0xxdbgsn6gpz78hfbzd7iffidpv8mfk734srwzn"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg17]; }; BSgenome_Hsapiens_UCSC_hg18 = derive2 { name="BSgenome.Hsapiens.UCSC.hg18"; version="1.3.1000"; sha256="1bd7hn4ksgpyhnbjb9qdqfz5cg6x5lsizbls55v9s9hnvfzq3yi6"; depends=[BSgenome]; }; @@ -78,6 +81,7 @@ in with self; { BSgenome_Hsapiens_UCSC_hg38_masked = derive2 { name="BSgenome.Hsapiens.UCSC.hg38.masked"; version="1.4.4"; sha256="0ac5c265pgq1yzyp655ix0awdszzxf3mhrp0qsfsb73msqb2s99n"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg38]; }; BSgenome_Mdomestica_UCSC_monDom5 = derive2 { name="BSgenome.Mdomestica.UCSC.monDom5"; version="1.4.2"; sha256="16kzb66kjpmf9j92pwh98ah5rhrnfyzdpr0rk659zham6dzga9ck"; depends=[BSgenome]; }; BSgenome_Mfascicularis_NCBI_5_0 = derive2 { name="BSgenome.Mfascicularis.NCBI.5.0"; version="1.4.2"; sha256="1lrdj7aibx4i60hpbaqgk3qir9zjs67mxdgp5jmgmw7gf2nwyn3x"; depends=[BSgenome]; }; + BSgenome_Mfascicularis_NCBI_6_0 = derive2 { name="BSgenome.Mfascicularis.NCBI.6.0"; version="1.5.0"; sha256="0zl73jkg56jrvqyqvp67jx63dl8li6pypkgn1dqj959qzdzc57j0"; depends=[BSgenome]; }; BSgenome_Mfuro_UCSC_musFur1 = derive2 { name="BSgenome.Mfuro.UCSC.musFur1"; version="1.4.1"; sha256="0c0569a1k36sk0vzf7afhnfm0n2nwcdp3dc88s1hghpg7lwi9g9j"; depends=[BSgenome]; }; BSgenome_Mmulatta_UCSC_rheMac10 = derive2 { name="BSgenome.Mmulatta.UCSC.rheMac10"; version="1.4.2"; sha256="06ja5fn3sgk2lmfwf7m5sqcz0dq732v8y4vhc2cnbbvhpyax0mbd"; depends=[BSgenome]; }; BSgenome_Mmulatta_UCSC_rheMac2 = derive2 { name="BSgenome.Mmulatta.UCSC.rheMac2"; version="1.4.0"; sha256="15vswd1fq7a7g1dkm0wzkmclih8z373nfzjyc3zrn9l0nawdv9jj"; depends=[BSgenome]; }; @@ -142,9 +146,9 @@ in with self; { FDb_UCSC_snp137common_hg19 = derive2 { name="FDb.UCSC.snp137common.hg19"; version="1.0.0"; sha256="1q1r7rk29q0zlzxz6fvfy1kjfli6wxzvhvhhfnf3z4ksy5332q63"; depends=[AnnotationDbi GenomicFeatures]; }; FDb_UCSC_tRNAs = derive2 { name="FDb.UCSC.tRNAs"; version="1.0.1"; sha256="1dymdalx9fzrplxyc0fd9faa4r5jimi7zyry9k65lyz1pabpkwqz"; depends=[AnnotationDbi GenomicFeatures]; }; GGHumanMethCancerPanelv1_db = derive2 { name="GGHumanMethCancerPanelv1.db"; version="1.4.1"; sha256="0ag1pkbh4mx4aplfrrz1q4f4cl05mczq9pcsfkd1071qk51dcwvx"; depends=[AnnotationDbi AnnotationForge org_Hs_eg_db]; }; - GO_db = derive2 { name="GO.db"; version="3.14.0"; sha256="1ryqhzyxs49ffhjcml4dlb88l1gpf85icba7n92psrk2ls0sdl25"; depends=[AnnotationDbi]; }; + GO_db = derive2 { name="GO.db"; version="3.15.0"; sha256="169d2fycsw1k6m2cx08i877nbcv1mwm1ll2apjjny83zqmrivjds"; depends=[AnnotationDbi]; }; GeneSummary = derive2 { name="GeneSummary"; version="0.99.3"; sha256="0za1cy8kz8all8g5wk3475lvzwp25wq7b7p0568didfif88w5pj2"; depends=[]; }; - GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.7"; sha256="11qrdcqlrv5n5wfsfz1i3v9cnyvkymfx7ir1dgdg1n1yvp8blz11"; depends=[]; }; + GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.8"; sha256="1d4yfah3fllmqbv76ygxfga4rbj03g558wbwnk61w70118rm0rsp"; depends=[]; }; GenomicState = derive2 { name="GenomicState"; version="0.99.15"; sha256="1r7z3n6wyrd2cclj5b7sg15wpmjdh9k5b1hjlw7jjx8j384l7l1h"; depends=[AnnotationDbi AnnotationHub bumphunter derfinder GenomeInfoDb GenomicFeatures IRanges org_Hs_eg_db rtracklayer]; }; Homo_sapiens = derive2 { name="Homo.sapiens"; version="1.3.1"; sha256="151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01"; depends=[AnnotationDbi GenomicFeatures GO_db org_Hs_eg_db OrganismDbi TxDb_Hsapiens_UCSC_hg19_knownGene]; }; Hs6UG171_db = derive2 { name="Hs6UG171.db"; version="3.2.3"; sha256="034aady3hy8j9bm7pbl8l8h0gcfnzmpyxg9l9s1ky0pj7ryzr93a"; depends=[AnnotationDbi org_Hs_eg_db]; }; @@ -157,7 +161,7 @@ in with self; { IlluminaHumanMethylation27k_db = derive2 { name="IlluminaHumanMethylation27k.db"; version="1.4.8"; sha256="0zw0n4a9v42ifmvw2hfzzvl8jz1d7f00ia59ljhcvvw9aj12q4zs"; depends=[AnnotationDbi org_Hs_eg_db]; }; IlluminaHumanMethylation27kanno_ilmn12_hg19 = derive2 { name="IlluminaHumanMethylation27kanno.ilmn12.hg19"; version="0.6.0"; sha256="0idy6xn3x5c640d47q52na03s29pj4l38dpxy8q9mh6hy8g29vp3"; depends=[minfi]; }; IlluminaHumanMethylation27kmanifest = derive2 { name="IlluminaHumanMethylation27kmanifest"; version="0.4.0"; sha256="1kvz6z7g61zdrc1i93wsk1zv5mwcswfkxkl114644q09djwbz1fx"; depends=[minfi]; }; - IlluminaHumanMethylation450kanno_ilmn12_hg19 = derive2 { name="IlluminaHumanMethylation450kanno.ilmn12.hg19"; version="0.6.0"; sha256="059vlxsx3p3fcnywwirahsc6mlk813zpqnbv0jsrag6x5bb8z6r4"; depends=[minfi]; }; + IlluminaHumanMethylation450kanno_ilmn12_hg19 = derive2 { name="IlluminaHumanMethylation450kanno.ilmn12.hg19"; version="0.6.1"; sha256="1272n72fvj4agszd9cv8l9h9qr2pzmd0rbvdz83x7x03cdddf9rn"; depends=[minfi]; }; IlluminaHumanMethylation450kmanifest = derive2 { name="IlluminaHumanMethylation450kmanifest"; version="0.4.0"; sha256="0qx75xwifrbkqmbkd8dhf44c34ibmbivqh7y8rvgrsizmi5ybcj1"; depends=[minfi]; }; IlluminaHumanMethylation450kprobe = derive2 { name="IlluminaHumanMethylation450kprobe"; version="2.0.6"; sha256="1iah0rw7d8qvgwvn6n2l4cln39ky010gqpd9shml45m48m6whiia"; depends=[AnnotationDbi]; }; IlluminaHumanMethylationEPICanno_ilm10b2_hg19 = derive2 { name="IlluminaHumanMethylationEPICanno.ilm10b2.hg19"; version="0.6.0"; sha256="0sfdx0lpiw3l4passx93pjfswd0iv3hxdc7ciazh53baib3xpv2d"; depends=[minfi]; }; @@ -166,6 +170,7 @@ in with self; { IlluminaHumanMethylationEPICmanifest = derive2 { name="IlluminaHumanMethylationEPICmanifest"; version="0.3.0"; sha256="0alhjda5g186z8b1nsmnpfswrlj7prdz8mkwx60wkkl6hkcnk6p3"; depends=[minfi]; }; JASPAR2018 = derive2 { name="JASPAR2018"; version="1.1.1"; sha256="1iq5b51ryah2ccdx16yyigfa2jiapcpm94l6vgvd4v7b94jjp8l7"; depends=[]; }; JASPAR2020 = derive2 { name="JASPAR2020"; version="0.99.10"; sha256="0nrp63z7q2ivv5h87f7inpp2qll2dfgj4227l4rbnzii38a2vfdr"; depends=[]; }; + JASPAR2022 = derive2 { name="JASPAR2022"; version="0.99.7"; sha256="0sayaxsazcsbwdkisjfmkc01piahkqi9xks3rfj60cf56wrjlbpa"; depends=[BiocFileCache]; }; JazaeriMetaData_db = derive2 { name="JazaeriMetaData.db"; version="3.2.3"; sha256="04lvcmm4ybxkfwgbiwcnpyj6kpbd0gd7jz6ijlbbvv6zdgdmvykb"; depends=[AnnotationDbi org_Hs_eg_db]; }; LAPOINTE_db = derive2 { name="LAPOINTE.db"; version="3.2.3"; sha256="0960gy5p4ybs5zs6251cgc3nk5a9gsh1nh23gkbkr3gc8jddinfm"; depends=[AnnotationDbi org_Hs_eg_db]; }; LowMACAAnnotation = derive2 { name="LowMACAAnnotation"; version="0.99.3"; sha256="0ri301ci54s8wwkah1jccy5h44xg8yjk08j5b15qmdsm25hli4wm"; depends=[]; }; @@ -184,7 +189,8 @@ in with self; { MafDb_gnomAD_r2_1_hs37d5 = derive2 { name="MafDb.gnomAD.r2.1.hs37d5"; version="3.10.0"; sha256="153dy3lx0islfdkmyik7lxp1w2yzb0bqmia673hlwi4rmvns112h"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; MafDb_gnomADex_r2_1_GRCh38 = derive2 { name="MafDb.gnomADex.r2.1.GRCh38"; version="3.10.0"; sha256="1v0sdjmn9z8gqn4yj4v04zycj3ngr32r04zqmkp6y41hcgdr8lxw"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; MafDb_gnomADex_r2_1_hs37d5 = derive2 { name="MafDb.gnomADex.r2.1.hs37d5"; version="3.10.0"; sha256="0y42ncmilijdxsgqsmskz7gff3il3fdf2kpflknmz1z9kybzaday"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - MafH5_gnomAD_v3_1_1_GRCh38 = derive2 { name="MafH5.gnomAD.v3.1.1.GRCh38"; version="3.13.0"; sha256="1fqw3qv4cw043ifyrcddsq3z13y4gk12cg7j39bg1am3msa7zmbg"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; }; + MafH5_gnomAD_v3_1_1_GRCh38 = derive2 { name="MafH5.gnomAD.v3.1.1.GRCh38"; version="3.13.1"; sha256="1hwl1k0h7p6kkzw0v0z177nlbjqlrr9x5nkrils2529g3ysrp3ky"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; }; + MafH5_gnomAD_v3_1_2_GRCh38 = derive2 { name="MafH5.gnomAD.v3.1.2.GRCh38"; version="3.15.0"; sha256="18hzw7f41ii16qpm3ch516b773900l1m1id5z6a763m01fg0mhiq"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores HDF5Array IRanges rhdf5 S4Vectors]; }; MmAgilentDesign026655_db = derive2 { name="MmAgilentDesign026655.db"; version="3.2.3"; sha256="00d0yjcb5id7zacx4bzdwy4q6f4qvnnx8ph4d4xz1fmcbspz2qiz"; depends=[AnnotationDbi org_Mm_eg_db]; }; MoExExonProbesetLocation = derive2 { name="MoExExonProbesetLocation"; version="1.15.0"; sha256="0bvj3bji4bwwmxjz4b57n1aqypdibdmry30rfwmlxss1hav96sl7"; depends=[AnnotationDbi]; }; Mu15v1_db = derive2 { name="Mu15v1.db"; version="3.2.3"; sha256="0qchqkbx6ybijab8qhflxj33kwksfll1d3d3917vydjac9fzw1lz"; depends=[AnnotationDbi org_Mm_eg_db]; }; @@ -192,9 +198,9 @@ in with self; { Mus_musculus = derive2 { name="Mus.musculus"; version="1.3.1"; sha256="143zdf83gbfqhy8jm9df7gzhw5q3a64jrjrxrzjf0zd76j8s8j6y"; depends=[AnnotationDbi GenomicFeatures GO_db org_Mm_eg_db OrganismDbi TxDb_Mmusculus_UCSC_mm10_knownGene]; }; Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; }; OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; }; - Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.14.0"; sha256="0irfwj52dm2dqw0y7fpp2i3xxma347cz8s75r73dklgs1ra5rp3r"; depends=[AnnotationDbi]; }; + Orthology_eg_db = derive2 { name="Orthology.eg.db"; version="3.15.0"; sha256="15lshbv5rlhh0cm9a235s0hxiy6svqp0pwk1gs4h6wlsr49560kv"; depends=[AnnotationDbi]; }; PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.11"; sha256="0ckhrbhcxf7lq1hz1lrkrb7djjsfy7m0abf3665aagk6vvzigxy8"; depends=[AnnotationDbi AnnotationHub BiocFileCache RSQLite]; }; - PFAM_db = derive2 { name="PFAM.db"; version="3.14.0"; sha256="05nnjar0nljpmzz99hssmfm16y7lyy8vf6ncw823vyg8g5893h95"; depends=[AnnotationDbi]; }; + PFAM_db = derive2 { name="PFAM.db"; version="3.15.0"; sha256="03vjfb9vx1gxrw1jkq6y4i46qhjj9z2mkdiflglbd6kpfrgnl0z7"; depends=[AnnotationDbi]; }; POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; }; PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; }; PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; @@ -207,22 +213,23 @@ in with self; { SHDZ_db = derive2 { name="SHDZ.db"; version="3.2.3"; sha256="077xy2zx3f4c01di18ki32xmrwgsc1qjci3wj33nmgsy5925zdxs"; depends=[AnnotationDbi org_Hs_eg_db]; }; SIFT_Hsapiens_dbSNP132 = derive2 { name="SIFT.Hsapiens.dbSNP132"; version="1.0.2"; sha256="1akqhmv9hp41q2jrvz4xvpdi30c4c6v4xbz6ykn6pdf0217p7xry"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; SIFT_Hsapiens_dbSNP137 = derive2 { name="SIFT.Hsapiens.dbSNP137"; version="1.0.0"; sha256="1472abqanbwziyynr851xzhg7ck8w1n98ymmggg7s46hzix5mlj8"; depends=[AnnotationDbi RSQLite VariantAnnotation]; }; - SNPlocs_Hsapiens_dbSNP_20101109 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20101109"; version="0.99.7"; sha256="1r1gvx563gv1lidi099yw7lvf8c0983yck9yf8r8iypiz1d4az73"; depends=[GenomicRanges IRanges S4Vectors]; }; - SNPlocs_Hsapiens_dbSNP_20120608 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20120608"; version="0.99.11"; sha256="0a1nyni8h3a7sq2sj5jfn3w6abkl5lwzbzhb8kg74v4359albcgm"; depends=[BSgenome GenomicRanges IRanges]; }; - SNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.11"; sha256="1dl5gs9iqdvaplvggpngp37pzgbjaavw98qppv2cp65ih9rn0wc0"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SNPlocs_Hsapiens_dbSNP142_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP142.GRCh37"; version="0.99.5"; sha256="13kmgfwzwmbrwd2g24a3cbp634jih7jigzhzq55bzzf3js48h3n3"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges]; }; + SNPlocs_Hsapiens_dbSNP_20101109 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20101109"; version="0.99.9"; sha256="1qxsaq2wai1rqbidz005frjw8r8m2ia9cd87ziw8i66a798rzima"; depends=[GenomicRanges IRanges S4Vectors]; }; + SNPlocs_Hsapiens_dbSNP_20120608 = derive2 { name="SNPlocs.Hsapiens.dbSNP.20120608"; version="0.99.13"; sha256="123n3rwkq8c8gqwhbwpsvis2x1xp137hchg9y7sv7l1givb6n2kf"; depends=[BSgenome GenomicRanges IRanges]; }; + SNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.12"; sha256="1hfqbf03jd2r7ybb19rl3czrjb4h4vjqlrrilfqc8yymy7myvqqb"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + SNPlocs_Hsapiens_dbSNP142_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP142.GRCh37"; version="0.99.6"; sha256="17ql8fsali09dx1vv9178ya7zx901vwq4bnjrs35fjrjdvx6yvfd"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges]; }; SNPlocs_Hsapiens_dbSNP144_GRCh37 = derive2 { name="SNPlocs.Hsapiens.dbSNP144.GRCh37"; version="0.99.20"; sha256="1z8kx43ki1jvj7ms7pcybakcdimfwr6zpjvspkjmma97bdz093iz"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; SNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.20"; sha256="0yxmsnxncr7w30r0d7bg5i96pclm2vf40p9jdqa02rc67a6sximn"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; SNPlocs_Hsapiens_dbSNP149_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP149.GRCh38"; version="0.99.20"; sha256="17bv25p1261hn9d7mxfp6pvivj15pxyvr92gms8a8msfqg9y0xkb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; SNPlocs_Hsapiens_dbSNP150_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP150.GRCh38"; version="0.99.20"; sha256="0jkwwgxxpm9ry8kizq8hs70sky41pks1ag40y5aqq91yjbpqlckj"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SNPlocs_Hsapiens_dbSNP151_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP151.GRCh38"; version="0.99.20"; sha256="19mmzlg76hh0imrqf135kcbwxkmm403gj9y7wk6ij9k12afr9kfz"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + SNPlocs_Hsapiens_dbSNP151_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP151.GRCh38"; version="0.99.21"; sha256="19j5h0dgxd2iw35p6fblj8b3z2d92zmmp60khw5zs70scd5fs9pb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + SNPlocs_Hsapiens_dbSNP155_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP155.GRCh38"; version="0.99.21"; sha256="0id595ily1kwzsc3sh3mhbjyki19vc7n4vzdwq9pdpasraykc718"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; TxDb_Athaliana_BioMart_plantsmart22 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart22"; version="3.0.1"; sha256="0j2zr4cddad7z1lxx9m9kfgyy7jajjnblpk9j8igd39ia3ixrpzc"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart25 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart25"; version="3.1.3"; sha256="0a6v0l6p13zmiysi3k8dxzdlxng552qqj9rnlbdavdiidla0pvm3"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart28 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart28"; version="3.2.2"; sha256="1yjyvrbx55y024lqg3b2rlf8pngqw5xi3p83j5ipan05wf0aq6ir"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Athaliana_BioMart_plantsmart51 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart51"; version="0.99.0"; sha256="17vbgpxzr7xkd4dnggj89hbnziczgdgk01gvmysl0cw68zsalsi6"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Btaurus_UCSC_bosTau8_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau8.refGene"; version="3.12.0"; sha256="1k06p4jk3lw8xkn31yjwmwk96rkrl6wqq3rmc8bxlbrdi99lh09c"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Btaurus_UCSC_bosTau9_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau9.refGene"; version="3.10.0"; sha256="1v7q9jaaj1n2vabjj6ij6pz0g89nqlyy4y4g65irz6cm5mvik4q9"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Celegans_UCSC_ce11_ensGene = derive2 { name="TxDb.Celegans.UCSC.ce11.ensGene"; version="3.12.0"; sha256="0vkra4f05s8nd3xvma1dw6zk5mn7yvnxykx1cs9zad041i1447m3"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Celegans_UCSC_ce11_ensGene = derive2 { name="TxDb.Celegans.UCSC.ce11.ensGene"; version="3.15.0"; sha256="0pr1f94bc0g88hnwnxf0gx4k83ic9mvdlhwmrjm3k1j5xjp8w0bi"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Celegans_UCSC_ce11_refGene = derive2 { name="TxDb.Celegans.UCSC.ce11.refGene"; version="3.4.6"; sha256="1aq4jhn2c67wibq02l8drrjscmicbj6z35d0jksq8mwhz8k30zn6"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Celegans_UCSC_ce6_ensGene = derive2 { name="TxDb.Celegans.UCSC.ce6.ensGene"; version="3.2.2"; sha256="1sgppva33cdy4isj2is8mfalj5gmmkpbkq9w1d83a4agcq31mi90"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Cfamiliaris_UCSC_canFam3_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam3.refGene"; version="3.11.0"; sha256="0rigyddnqxb3dfrj93198j0l8s1flp051xbkmz0b55qp1cyrl5kr"; depends=[AnnotationDbi GenomicFeatures]; }; @@ -239,8 +246,8 @@ in with self; { TxDb_Hsapiens_UCSC_hg18_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg18.knownGene"; version="3.2.2"; sha256="1yk9ggclkqqfzrdp8gcqyplvif824pa7df54ck5gb1xb9q5s975w"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg19.knownGene"; version="3.2.2"; sha256="1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Hsapiens_UCSC_hg19_lincRNAsTranscripts = derive2 { name="TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts"; version="3.2.2"; sha256="0bmbp7kydvviczw8axgxq2wdlwq6fdas90jk9bg56avjq5syws2g"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.14.0"; sha256="1akz7rwchalnv8pd1x9y21zaj82kp82nbvm5ghhdl7z49d7spg6c"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Hsapiens_UCSC_hg38_refGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.refGene"; version="3.13.0"; sha256="07b1bxg17kql6kivwz2gwwjfk9b052q610jciw7c2g4lr425x7ja"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.15.0"; sha256="1y9fqhkk5wgny43bxc0j82afy49vz34rblcmcfmwavngdkpnj879"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Hsapiens_UCSC_hg38_refGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.refGene"; version="3.15.0"; sha256="03ca3spvhci16fndy82fx0cik0a6yqj77l6nfvv5k9qg3xnrp179"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmulatta_UCSC_rheMac10_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac10.refGene"; version="3.14.0"; sha256="12gxs6s57l22013g40b7hb09vxhmdri73cp9rgs2icb88p7sjlib"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.12.0"; sha256="1a0wbh4dajpgynmw2iwbvp836nklzlk0cfhqnwmqq9l4gzzh2w07"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.12.0"; sha256="1k7mq3p96wfd0694zw00hs4529zvv8nnfdwlsb94bn11qjhr1zrz"; depends=[AnnotationDbi GenomicFeatures]; }; @@ -256,12 +263,13 @@ in with self; { TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.12.0"; sha256="08kf9kmdvifcbz0lc8paqp10x272b0f1jh6bj241ii455xsby2zi"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Rnorvegicus_UCSC_rn6_ncbiRefSeq = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.ncbiRefSeq"; version="3.12.0"; sha256="1gb8l88z1xiyc1r8hvv4kdahd0py2dr5k0zizsrfh013p6q7z5yw"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Rnorvegicus_UCSC_rn6_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.refGene"; version="3.4.6"; sha256="1piqli0wdq3r289is8lmijnshm8rmx7rphp2qfymlvc0jmvgs9wr"; depends=[AnnotationDbi GenomicFeatures]; }; - TxDb_Rnorvegicus_UCSC_rn7_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn7.refGene"; version="3.14.0"; sha256="1h8427klifyv083c02p1r5ic16dr5q2b8r3nfgymrpx3nv6wy0hv"; depends=[AnnotationDbi GenomicFeatures]; }; + TxDb_Rnorvegicus_UCSC_rn7_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn7.refGene"; version="3.15.0"; sha256="0vvz341sclwxrgn14srdingyah6skd4a2qp8978qnd871n2z394f"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Scerevisiae_UCSC_sacCer2_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer2.sgdGene"; version="3.2.2"; sha256="0l5gcwhbvzx60p9hjhd31angamb0hkgdg2avga7341j77rd5pwza"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Scerevisiae_UCSC_sacCer3_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer3.sgdGene"; version="3.2.2"; sha256="1sjwl7fb3l3zxxbk8gkvzxwdsind0xjj7kmh7dachm6fi17hpb3d"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Sscrofa_UCSC_susScr11_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr11.refGene"; version="3.12.0"; sha256="1i3w8avi5ihkynapya1wy70i6f0nq4jyy5nvlwikppqpdjwn7gb4"; depends=[AnnotationDbi GenomicFeatures]; }; TxDb_Sscrofa_UCSC_susScr3_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr3.refGene"; version="3.12.0"; sha256="01bl7zdxyhhg4706jhi7271fs09riixkyr3x0bancl1fpzwszc6p"; depends=[AnnotationDbi GenomicFeatures]; }; - XtraSNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.12"; sha256="0a27y0ngg760y5wwcja4dpd7cjd8h5zg1s2b3a1r54s21k65zny3"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + UCSCRepeatMasker = derive2 { name="UCSCRepeatMasker"; version="3.15.2"; sha256="0hi1h8vvbf27wk13gbfgm0amjqgl7b2qxlgakcbr87qxwbi02zv7"; depends=[AnnotationHub GenomeInfoDb RCurl XML]; }; + XtraSNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.13"; sha256="1fidmrf0xr7wwd4v1y7x2wwyplplbs1z8jqpfdjpc8aclcy38m3f"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; XtraSNPlocs_Hsapiens_dbSNP144_GRCh37 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh37"; version="0.99.12"; sha256="0k823fvqjmdkmd47m7wyra6jxmv8lnk2i1xl4pp0mh3zgb87hgfb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; XtraSNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.12"; sha256="0d4q32ij2x4726wvw06sgmivid0n94vfdmszdyh607xlcahqxa5z"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; adme16cod_db = derive2 { name="adme16cod.db"; version="3.4.0"; sha256="1vn9s1lrl6zzs00madb111fdzqjfb45mprpjqap8bvib65942rvq"; depends=[AnnotationDbi org_Rn_eg_db]; }; @@ -270,22 +278,22 @@ in with self; { agprobe = derive2 { name="agprobe"; version="2.18.0"; sha256="1vnawamcpz16na8nmlq2czfxcr325fwdnngxl65mmnbd0f4lmy3k"; depends=[AnnotationDbi]; }; alternativeSplicingEvents_hg19 = derive2 { name="alternativeSplicingEvents.hg19"; version="1.1.0"; sha256="0q90nw3ds66zbyn3ch19lq1qimd1hz1s3jyyd6zi3v10p5s8bm0y"; depends=[AnnotationHub]; }; alternativeSplicingEvents_hg38 = derive2 { name="alternativeSplicingEvents.hg38"; version="1.1.0"; sha256="18qabggvs9mcg8fwd6prdca8lfxn9r9i0493l667n8jl9vy2pbfc"; depends=[AnnotationHub]; }; - anopheles_db0 = derive2 { name="anopheles.db0"; version="3.14.0"; sha256="10zgx5gkn1pz39yxszn24bp7r4rqlqqhk08v9a364w30vjxxs5j7"; depends=[AnnotationDbi]; }; - arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.14.0"; sha256="0ai9l79m8mdp8w00bfvrzryxy50dvdv203n8202ap2wgxc8z7krp"; depends=[AnnotationDbi]; }; + anopheles_db0 = derive2 { name="anopheles.db0"; version="3.15.0"; sha256="01hs1qxzpp9974yhplkhd4hq0mxx63plgb9p5azqz5z05x88ksfn"; depends=[AnnotationDbi]; }; + arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.15.1"; sha256="1sazbvgc7rjfcn9y0qkvq0s21vb8i5iy14w9wi274s2h75ishg2i"; depends=[AnnotationDbi]; }; ath1121501_db = derive2 { name="ath1121501.db"; version="3.13.0"; sha256="0v4vapbns71dpv09857lyrnliq202i8yi4ar9z81wbpbc22lhf0d"; depends=[AnnotationDbi org_At_tair_db]; }; ath1121501cdf = derive2 { name="ath1121501cdf"; version="2.18.0"; sha256="1naq8f8dwgbmndx178nm2pw6hjx5ljx0w1wb4dfjifnl4bs5rqcc"; depends=[AnnotationDbi]; }; ath1121501probe = derive2 { name="ath1121501probe"; version="2.18.0"; sha256="0a2nd8zhp3ybis780l3rrmwcxskbl3a111g8w6m8qfwsw5vnlqg1"; depends=[AnnotationDbi]; }; barley1cdf = derive2 { name="barley1cdf"; version="2.18.0"; sha256="0rbij5cqr2sz33y5waybv85nrcgf70iwj5gk13g0xn9p1l1zxyn2"; depends=[AnnotationDbi]; }; barley1probe = derive2 { name="barley1probe"; version="2.18.0"; sha256="1kh5r748b4vkmvlfaclmrh07ypbrzgxn90liqfz1rwkabh6rfk71"; depends=[AnnotationDbi]; }; bovine_db = derive2 { name="bovine.db"; version="3.13.0"; sha256="06692b1n0lzhg0biixipsnwx33w9y8wkc7pc5q1lkjfzbmd2inml"; depends=[AnnotationDbi org_Bt_eg_db]; }; - bovine_db0 = derive2 { name="bovine.db0"; version="3.14.0"; sha256="18cdnn7igix9j5z66cjvj0nrmj8j4ngi6ml9y2byj9pk0ln17izs"; depends=[AnnotationDbi]; }; + bovine_db0 = derive2 { name="bovine.db0"; version="3.15.0"; sha256="1vvlsdbnbdg1pifzzrzsgz9lp251p3bq80mgc5jmmkw2mf1pk3n0"; depends=[AnnotationDbi]; }; bovinecdf = derive2 { name="bovinecdf"; version="2.18.0"; sha256="13mf0yy0dypkm5n2ghl04xm6ayb9bn9qijqhgynksghi7s2k34mb"; depends=[AnnotationDbi]; }; bovineprobe = derive2 { name="bovineprobe"; version="2.18.0"; sha256="0i4afa5dksnir2nfrfh2cynjm59sm6vfaqa9wyag8cxg7c2nlm1i"; depends=[AnnotationDbi]; }; bsubtiliscdf = derive2 { name="bsubtiliscdf"; version="2.18.0"; sha256="1rihrjim37b49rhqr4nxga8sp67qri9xqlqc141mhbngh6cw3iyl"; depends=[AnnotationDbi]; }; bsubtilisprobe = derive2 { name="bsubtilisprobe"; version="2.18.0"; sha256="0k99hvgaswn96x4yanvr9cy8bdy69sd5q7yp6dj9synxj7s1fcw9"; depends=[AnnotationDbi]; }; cMAP = derive2 { name="cMAP"; version="1.15.1"; sha256="0pzizm27rgcaic7wsh52z30v1jwarmz4cwh1mksbygp63k54mwiv"; depends=[]; }; canine_db = derive2 { name="canine.db"; version="3.13.0"; sha256="1x1mlh0p6r2l5kclarqwgiw9y64xc8jhp6252hhpl9bpnn638n3s"; depends=[AnnotationDbi org_Cf_eg_db]; }; - canine_db0 = derive2 { name="canine.db0"; version="3.14.0"; sha256="111m5h4zc5cg10rwia1w9rnqbwd2wdr1cg5b4imw9cy5xgnr0h4g"; depends=[AnnotationDbi]; }; + canine_db0 = derive2 { name="canine.db0"; version="3.15.0"; sha256="0ycxp1z0idjdhzi5zr5s3cj6h421mfgjdvrcx64h4sfg6qga8yv2"; depends=[AnnotationDbi]; }; canine2_db = derive2 { name="canine2.db"; version="3.13.0"; sha256="1xzz0vivdypwl6kaq2ba02jkpxw0r9r98297ilksdh8m71f244si"; depends=[AnnotationDbi org_Cf_eg_db]; }; canine2cdf = derive2 { name="canine2cdf"; version="2.18.0"; sha256="077cmmnhjdk0vxjzm1kqf3q5kgx6chwkm59dr4s5dy019rqb6sqr"; depends=[AnnotationDbi]; }; canine2probe = derive2 { name="canine2probe"; version="2.18.0"; sha256="1l849a1dqy4kpcsxs0lvb48ag81i0f0ys0w4757rw4kp8ry59z4b"; depends=[AnnotationDbi]; }; @@ -295,10 +303,10 @@ in with self; { celeganscdf = derive2 { name="celeganscdf"; version="2.18.0"; sha256="0a6w0a48azg0i21j3aqb7fnxck3ff9w3gsi89bnlfh0zx6pknx7p"; depends=[AnnotationDbi]; }; celegansprobe = derive2 { name="celegansprobe"; version="2.18.0"; sha256="05k7si3f8pzkyb8jv0r2vkavbrqxsn4nawl92gcphfsylrwcddqb"; depends=[AnnotationDbi]; }; chicken_db = derive2 { name="chicken.db"; version="3.13.0"; sha256="0szb7sgassw10kzm8iz8h3fdbxm6v0kz95yb3a9icj2chi5d1m2i"; depends=[AnnotationDbi org_Gg_eg_db]; }; - chicken_db0 = derive2 { name="chicken.db0"; version="3.14.0"; sha256="1409v0yd3zzpfg3a11nyyb7nyp1apcj2pjwwp9c5i3c6aa24zbww"; depends=[AnnotationDbi]; }; + chicken_db0 = derive2 { name="chicken.db0"; version="3.15.0"; sha256="09jpzqj46w0m4gz9i3wghvhd0agksimmyp6c53d9sszi45sxhqyc"; depends=[AnnotationDbi]; }; chickencdf = derive2 { name="chickencdf"; version="2.18.0"; sha256="09hhim5s9xj7n2b5rhn1svf5qly2mn0rr2v2ls25hfzyrqcbxlz1"; depends=[AnnotationDbi]; }; chickenprobe = derive2 { name="chickenprobe"; version="2.18.0"; sha256="1fdsiwfyg7fwslrr7xs3gny7sw24bzg5k1fvlyzb1477sgj0pid3"; depends=[AnnotationDbi]; }; - chimp_db0 = derive2 { name="chimp.db0"; version="3.14.0"; sha256="02whgyab4fr2b9rnwhld2gyrqz8alfdn3mbx8v21klwvkcslvwav"; depends=[AnnotationDbi]; }; + chimp_db0 = derive2 { name="chimp.db0"; version="3.15.0"; sha256="0k2wip710k6z4s20f86ff3lbhjh5jg9waaqcznhhrn4nca9gymzr"; depends=[AnnotationDbi]; }; chromhmmData = derive2 { name="chromhmmData"; version="0.99.2"; sha256="13g6x7lzmkz9qv7yr6ps8gsgilgr048lc7y0y7xsfa9ws3n08fzj"; depends=[]; }; citruscdf = derive2 { name="citruscdf"; version="2.18.0"; sha256="1326mj1xf3k4v5iyyn46whx24qfng0x3cv6rvckdr1ycc1v887dn"; depends=[AnnotationDbi]; }; citrusprobe = derive2 { name="citrusprobe"; version="2.18.0"; sha256="0bf1wic136cxwgs4j13wsyqasnyvr0jw1hzg6qizndmy7g8hrb87"; depends=[AnnotationDbi]; }; @@ -322,15 +330,15 @@ in with self; { ecoli2_db = derive2 { name="ecoli2.db"; version="3.13.0"; sha256="1i2arr26hch7lmx2bixzy4l0zaa0gynah4dfwa98cvb24ahqqj9f"; depends=[AnnotationDbi org_EcK12_eg_db]; }; ecoli2cdf = derive2 { name="ecoli2cdf"; version="2.18.0"; sha256="1rkxrwadq9kg9685z9pg6rgc4bblkx5p3c6snsl4gv2k188dva9r"; depends=[AnnotationDbi]; }; ecoli2probe = derive2 { name="ecoli2probe"; version="2.18.0"; sha256="11q4ka0ncjapahic49xdl9919vm9frrwlqgj101krgkg262lfm8n"; depends=[AnnotationDbi]; }; - ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.14.0"; sha256="0j7xshxhn2ysk5mg32hjxbc736g3zn15314p1mxwwwy579hrcbbn"; depends=[AnnotationDbi]; }; - ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.14.0"; sha256="13a4gnz2viia9v1hryvqs8nvm9gxz43lpwq872rjvcs07bazsjd5"; depends=[AnnotationDbi]; }; + ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.15.0"; sha256="00r9w2wklmvswrvvvmx0bwgwlb5q2fj7wr0nz2p5rnv4nczj8f8w"; depends=[AnnotationDbi]; }; + ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.15.0"; sha256="0xall7j0y7gq4iv02q4q3b4mj7111zxjb1gycib1z3fy6nfx5bl1"; depends=[AnnotationDbi]; }; ecoliasv2cdf = derive2 { name="ecoliasv2cdf"; version="2.18.0"; sha256="16i6has9qgmzakcy24racc1h9j331wndv5c87qp5r1zrai61zyav"; depends=[AnnotationDbi]; }; ecoliasv2probe = derive2 { name="ecoliasv2probe"; version="2.18.0"; sha256="1hfrnal170cdigc2fmnynb75jjsiq77p4x6ws9gah558hvx87nk3"; depends=[AnnotationDbi]; }; ecolicdf = derive2 { name="ecolicdf"; version="2.18.0"; sha256="18g5prjykn356k35m131ifn128k5mhij2x26balqav0azigzjqsn"; depends=[AnnotationDbi]; }; ecoliprobe = derive2 { name="ecoliprobe"; version="2.18.0"; sha256="17g5zxfzsak7a0w51irc0w1w2i5ngdkx9db6rhv1fyp8mfjgaphd"; depends=[AnnotationDbi]; }; excluderanges = derive2 { name="excluderanges"; version="0.99.6"; sha256="1ryp2ghbx1b1268fpgza5rn6brhalff9hsr6fxpr5x5mc35hkd68"; depends=[]; }; fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.7.1"; sha256="19isa4x8js0pdb4k8a11bw3bzmzv6jc4jphzrvav7piqkvrgykzx"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - fly_db0 = derive2 { name="fly.db0"; version="3.14.0"; sha256="0jk5k5zpr4r9yn2l7vpb01xdmhi0pm3jg333jr7rv0c6fzjq5279"; depends=[AnnotationDbi]; }; + fly_db0 = derive2 { name="fly.db0"; version="3.15.0"; sha256="0x4hsqlzsjjdhjfqa57xwsvn5cnn7radhqb21vjq7vcpvp2hfjmp"; depends=[AnnotationDbi]; }; geneplast_data = derive2 { name="geneplast.data"; version="0.99.6"; sha256="1vq2l828d25lsmmac6079vip8bbvqhiyr1x58s467cwcl1mgayrk"; depends=[]; }; geneplast_data_string_v91 = derive2 { name="geneplast.data.string.v91"; version="0.99.6"; sha256="0mc26d0sgmpmfmqsqinqv5k6vhg0hlc8hsjkcnvf369yav224nq1"; depends=[]; }; genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; }; @@ -463,7 +471,7 @@ in with self; { hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.8.0"; sha256="00fjhz7gac0rssn3kplag68vfx7gimjrm4mc7z516bs013rppgsz"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.8.0"; sha256="0s4zl9lv5w3fkb9axhz9siliz73brwarw8a7cam1p9b2kmdrdqs0"; depends=[AnnotationDbi org_Hs_eg_db]; }; hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.8.0"; sha256="1g7yfva96vhkdvcvsjwsj7sy8q6kczd5rmcwrwjc73v9qi4ywgal"; depends=[AnnotationDbi org_Hs_eg_db]; }; - human_db0 = derive2 { name="human.db0"; version="3.14.0"; sha256="1yinl32xaijp7b53z2dln8d60alafarkcxsiz55avxy3birnf1cq"; depends=[AnnotationDbi]; }; + human_db0 = derive2 { name="human.db0"; version="3.15.0"; sha256="15y7ggkapizkj9fx0w0d388vqd4v2j24crygx7c783g01hi0lrn1"; depends=[AnnotationDbi]; }; human1mduov3bCrlmm = derive2 { name="human1mduov3bCrlmm"; version="1.0.4"; sha256="1p7qpzk6svafgdafljhh4k0z7pcs78qmwwfd80r0a1yhkssmp0v9"; depends=[]; }; human1mv1cCrlmm = derive2 { name="human1mv1cCrlmm"; version="1.0.3"; sha256="1qlph3qrjv52ddzlj8pwa93zzh70x4mbdrdr7q9pan427lpck9gx"; depends=[]; }; human370quadv3cCrlmm = derive2 { name="human370quadv3cCrlmm"; version="1.0.3"; sha256="1chjx9vsmqz2whslw1l7jn7nfn7zx6pcjfmqqm9mh81i74rzrdik"; depends=[]; }; @@ -501,7 +509,7 @@ in with self; { m20kcod_db = derive2 { name="m20kcod.db"; version="3.4.0"; sha256="1p2sm5j4b50iqzwcb984qrh74c3hf6yml7b8mvxlhhhvxz4iy1np"; depends=[AnnotationDbi org_Mm_eg_db]; }; maizecdf = derive2 { name="maizecdf"; version="2.18.0"; sha256="0yfz5gjhsq4wz6j63s1b1hxjz03gsmrlfs2cdc8smq6azp3zdid4"; depends=[AnnotationDbi]; }; maizeprobe = derive2 { name="maizeprobe"; version="2.18.0"; sha256="01h5dv5i0zaqlphkii9ipxy9wswv1srgprrpr5vmi01c9d98qsk0"; depends=[AnnotationDbi]; }; - malaria_db0 = derive2 { name="malaria.db0"; version="3.14.0"; sha256="0c9i4kh7hpahrkc3l7cpg9x64fcwlkxsxa1ism774y0mifki0qy6"; depends=[AnnotationDbi]; }; + malaria_db0 = derive2 { name="malaria.db0"; version="3.15.0"; sha256="07fd1pfkzkjrf6zk061hngf2hba9yikczc5kdwks22sh8sz407yd"; depends=[AnnotationDbi]; }; medicagocdf = derive2 { name="medicagocdf"; version="2.18.0"; sha256="1clz679cc887x98c6jk93cphijkbg5r2nd9idrj5901yvh6p9n5q"; depends=[AnnotationDbi]; }; medicagoprobe = derive2 { name="medicagoprobe"; version="2.18.0"; sha256="0w6j1pfkvb3npc8srpjifq2ywnqxhc9q090jqzmkx22x36cw9cl5"; depends=[AnnotationDbi]; }; metaboliteIDmapping = derive2 { name="metaboliteIDmapping"; version="1.0.0"; sha256="0nflpvla3wn8i2gaja5wwjkxk0jich95f5ws3rnhh2a6rx3xi3ql"; depends=[AnnotationHub]; }; @@ -556,7 +564,7 @@ in with self; { mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.8.0"; sha256="1bpzpba9aifc7w6qbrh6rnc636k6z1r9gz03sxvc3aa3977p9xag"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.8.0"; sha256="172bhzqqw5hz76bw8vqwx2qpw4f6rwbcm6savmkxmmhzb2nq60z5"; depends=[AnnotationDbi org_Mm_eg_db]; }; mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.8.0"; sha256="02g2n5nkxi9lqw9h7sbkblk99zd57lkrldqb1fmi9zww59qwagrv"; depends=[AnnotationDbi org_Mm_eg_db]; }; - mouse_db0 = derive2 { name="mouse.db0"; version="3.14.0"; sha256="1s0v0jndm29jdb7il853i9kx3mqnqviqwd2v1159l0y4fqpv6g1y"; depends=[AnnotationDbi]; }; + mouse_db0 = derive2 { name="mouse.db0"; version="3.15.0"; sha256="1b85xci8xcmck41yqm1sd63cvxmkrnm5cpfdnr9dmw77vl1p85wb"; depends=[AnnotationDbi]; }; mouse4302_db = derive2 { name="mouse4302.db"; version="3.13.0"; sha256="0rf22kfj6y96ap0gcwq3mnpv6fj0yax37gf51sfi0wkmp95k7rcs"; depends=[AnnotationDbi org_Mm_eg_db]; }; mouse4302cdf = derive2 { name="mouse4302cdf"; version="2.18.0"; sha256="1mpyma4x8zfs2fmmx57xw4cfs2cf9lhw71nc3icl72d7vmwidswc"; depends=[AnnotationDbi]; }; mouse4302frmavecs = derive2 { name="mouse4302frmavecs"; version="1.5.0"; sha256="04clwkfz1gqqwrnqbavkka3hv480w6vi6c4q947qqnhw8j5jjp7s"; depends=[]; }; @@ -594,26 +602,25 @@ in with self; { nugomm1a520177probe = derive2 { name="nugomm1a520177probe"; version="3.4.0"; sha256="1n70k0mhv146983myjgk1cgkr9rmmcpqdv8wpkcr320qcvgf9bn7"; depends=[AnnotationDbi]; }; oligoData = derive2 { name="oligoData"; version="1.8.0"; sha256="1d1yfms3jv2c4s255xnh8yxwijrj35skw3nxds7l46y88lg3qn8y"; depends=[oligo]; }; ontoProcData = derive2 { name="ontoProcData"; version="0.99.9"; sha256="1axqhximb238h7ib7sd7g1n1in8969d263pjd362i0s1m4y5y033"; depends=[]; }; - org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.14.0"; sha256="1biz3c5zjc0vja77yrflkaalj7pf0mrjcdxiqvb7cgnyhajgpz41"; depends=[AnnotationDbi]; }; - org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.14.0"; sha256="0yi2zzgqwxfv7yp8n3mmmsnxzzy7q3zgckckbxwmj98gsizc2v9p"; depends=[AnnotationDbi]; }; - org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.14.0"; sha256="0igswc3ifwzi4vygy957j4936hpj0laalxlhnhgf4adq08g46l6f"; depends=[AnnotationDbi]; }; - org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.14.0"; sha256="1ji2gnwiprfsxvw0302lzqw4x82q47k0kb9ksxb0gi78x9wjxg1b"; depends=[AnnotationDbi]; }; - org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.14.0"; sha256="0asq3f3638ar59k3vjlq51wc0kcv5z3z8rx590gx3hpx84c5f8jr"; depends=[AnnotationDbi]; }; - org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.14.0"; sha256="1r9p3fsygw2v2mawzz7x012ww024qdw7riik78xhf5w0knsjxmdc"; depends=[AnnotationDbi]; }; - org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.14.0"; sha256="1pa2f748sssbbwfdizrf3brqdsdhp403k6kqs24a68ijm1szz9kj"; depends=[AnnotationDbi]; }; - org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.14.0"; sha256="1f0m8xmvvllv4d2dmbkqaplngmavj9jzzq1chjxjwb1bwn4l4r6v"; depends=[AnnotationDbi]; }; - org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.14.0"; sha256="18arc9x4lg8fblgraa6fdzc5gzidqvw1c22rv64c6gv0wdi3ixby"; depends=[AnnotationDbi]; }; - org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.14.0"; sha256="16pldxp326v2z5nifzisp0hssvysb4vdv6132q85xfclfc8zz517"; depends=[AnnotationDbi]; }; - org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.14.0"; sha256="0mnddv42ll0sc0zxf7hkgilslykbvfn7xgxg1g8qi57q2dmpwb6j"; depends=[AnnotationDbi]; }; - org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.14.0"; sha256="0iddj19k34v66jzk8q1khpw9wdcl3qdzdmhmzjhcxwahid22iwjn"; depends=[AnnotationDbi]; }; - org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.14.0"; sha256="046qv6y137nzkj8h8ripq41g60vs11m40hcdk7qd8ihirvwdg8s4"; depends=[AnnotationDbi]; }; + org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.15.0"; sha256="1qnqp1m7asa16llxlrjmj6ng93v7ngcg03l51k33cnwjhzalgl88"; depends=[AnnotationDbi]; }; + org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.15.1"; sha256="1n954fc14rfdsaldw93dnw11jrs0ar0bk5icc86mdiy0c18bvx4z"; depends=[AnnotationDbi]; }; + org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.15.0"; sha256="0nmrhbnpkjgmb5adh38lffrv1h84grfy6lbgd98y6b1iq58facnl"; depends=[AnnotationDbi]; }; + org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.15.0"; sha256="0hc3gd782yynn12wkawwri07src6ay3zwpj0yjbxcgkkrdga8jdj"; depends=[AnnotationDbi]; }; + org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.15.0"; sha256="1dmvszbri4kipjydjaz78igi16xqjlzxvns4f2d1rfdlfvwpgvyf"; depends=[AnnotationDbi]; }; + org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.15.0"; sha256="1d9igsxxl7nws3ah6k4vz9hfzpdb0vb8hg6h911yr4z0hpc00hbk"; depends=[AnnotationDbi]; }; + org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.15.0"; sha256="0nmgwqq8s4vswa9cc5r3qglgbc13wggs2isnj9n1rnb738i3n54n"; depends=[AnnotationDbi]; }; + org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.15.0"; sha256="0x0j7fc8pyz23jn6ag3cvz55zrk3gmvnkqhfwvsvdz7v72cgwhxy"; depends=[AnnotationDbi]; }; + org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.15.0"; sha256="10ma0823mr2aj9xrr0ygg8sjdndksslkjpzlxb259lwy421hskcn"; depends=[AnnotationDbi]; }; + org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.15.0"; sha256="1gi8dj5hn8798fgwhqskn131p108n78lvk2wnl69sb6cwyw4dg5g"; depends=[AnnotationDbi]; }; + org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.15.0"; sha256="0prwma5jfxszwc4avna51x4cmnqchz2s317cp4ia5w7035hbpj8x"; depends=[AnnotationDbi]; }; + org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.15.0"; sha256="12npjcq5n04ja82yxpp35lmjgxrzd3rp5xxmrggzw0zb1w4dyn66"; depends=[AnnotationDbi]; }; + org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.15.0"; sha256="1ly8bfjq4n3agb7f27cizf87qy0y4001nimnw9a3nar1hi43df7n"; depends=[AnnotationDbi]; }; org_Mxanthus_db = derive2 { name="org.Mxanthus.db"; version="1.0.27"; sha256="1jqwsdjz1d8fwqhq26lavb2kq739ddlb8khsh4b096vhnwv3dxg5"; depends=[AnnotationDbi AnnotationHub BiocFileCache BiocStyle]; }; - org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.14.0"; sha256="1fs68n9xyia6v9jj8a91asmrirnh2xkqcgrjbzk7x6ss0rlwcl7w"; depends=[AnnotationDbi]; }; - org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.14.0"; sha256="1xh3hdzb37baml9nvi22hy86js2iigkfwnij3dd368r35qd394xk"; depends=[AnnotationDbi]; }; - org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.14.0"; sha256="1p4pzd6dl2jwi9n0kkw5cfc8swipgh624aj1znznb5yc9zyf26sr"; depends=[AnnotationDbi]; }; - org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.14.0"; sha256="1cklqalaycalh689jks9nxizr2nd6ljqxvnn15pah48gcc1s727q"; depends=[AnnotationDbi]; }; - org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.14.0"; sha256="05s3qjvdxxni2s4ikcnbcnm3an5g0ch7yabdixz9z7qd5npj2wq8"; depends=[AnnotationDbi]; }; - org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.14.0"; sha256="1ysrc12kzhlf5d86bz9dv7prjcwh68mww18dgivfamzqsk0x6wir"; depends=[AnnotationDbi]; }; + org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.15.0"; sha256="1dca0qxji9nfrmr8p01w9fm2fqghkmjhwfjky8y6k49k28mr3pi6"; depends=[AnnotationDbi]; }; + org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.15.0"; sha256="0yx4vqax25p0cy6li2pxbmgsslxk2nbqx381vsikpiyqlzkb77p0"; depends=[AnnotationDbi]; }; + org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.15.0"; sha256="0rhrb52qafvxjxg3b65w67x9lhcmxc1pz4svp1q549f6s75mhvmp"; depends=[AnnotationDbi]; }; + org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.15.0"; sha256="0fv7y4ldyg2l1zr2csbaf8f34xz2wlr8rj86bgyn1ygra503irwm"; depends=[AnnotationDbi]; }; + org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.15.0"; sha256="0kzr4mnb2mld46d81ckygqg8s9r0nxcdckixn748yw0hwvf33krg"; depends=[AnnotationDbi]; }; paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; }; paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; }; pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; }; @@ -791,7 +798,7 @@ in with self; { phastCons100way_UCSC_hg38 = derive2 { name="phastCons100way.UCSC.hg38"; version="3.7.1"; sha256="0dka39rvx4d3wbcjypcgvc19s6cnxkkfywa4irv23kpibq1sjyv0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; phastCons30way_UCSC_hg38 = derive2 { name="phastCons30way.UCSC.hg38"; version="3.13.0"; sha256="0jq5z1af0f5jqazz46gvf3nnkrp91a6qzb96bk7fjdbvk5b3z0dd"; depends=[AnnotationHub GenomicScores]; }; phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.7.1"; sha256="105isdrb3nsy30wd8yy9vrrv8b7c8izc11xqqixg6rcriacd0rl0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; }; - pig_db0 = derive2 { name="pig.db0"; version="3.14.0"; sha256="0m25d7sgzkivzdinfmr07jk51i2zia38g2ppbpvv3akp3sqykz8h"; depends=[AnnotationDbi]; }; + pig_db0 = derive2 { name="pig.db0"; version="3.15.0"; sha256="0rbfkbi7hmjmsb0w6qzvz70cg6g1j0zyl2bm3jckb2x80nzd0cyl"; depends=[AnnotationDbi]; }; plasmodiumanophelescdf = derive2 { name="plasmodiumanophelescdf"; version="2.18.0"; sha256="1vs36091djinn3g6rjhmy9xfdyi58365zbcjc9mf50adnp2i5fq9"; depends=[AnnotationDbi]; }; plasmodiumanophelesprobe = derive2 { name="plasmodiumanophelesprobe"; version="2.18.0"; sha256="03hfq51nrpmx8ihc48jiih6bk99irrgal9x7i7mgcv8xd508gcsy"; depends=[AnnotationDbi]; }; poplarcdf = derive2 { name="poplarcdf"; version="2.18.0"; sha256="0j28czs936j2wgwp63qbwl1mjcflcrx7ir88jzxkkw7411ch1gl1"; depends=[AnnotationDbi]; }; @@ -821,7 +828,7 @@ in with self; { ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.8.0"; sha256="1bi4wy0sbhsyavxwshxvf3iqmyz26q7y2vqp1h3rjshsjdmhfd0h"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.8.0"; sha256="1m0hd0nlav9dhqzvs5drl8q3llx2wjxdfvb24fmjnba4h769ns7k"; depends=[AnnotationDbi org_Rn_eg_db]; }; ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.8.0"; sha256="14hp03pizq7kprwk26s9w6s27zzbs2kk50qhjbiwic1xbrl0dp8a"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rat_db0 = derive2 { name="rat.db0"; version="3.14.0"; sha256="0kv02lf2k4xxa25sxjhb8zra8zfgn1jflqcxvq2zkwaj0xdw9883"; depends=[AnnotationDbi]; }; + rat_db0 = derive2 { name="rat.db0"; version="3.15.0"; sha256="1cj6s5x7zkw642qgbbngnpym5f71p3cvi79vx0y6pd565s6hfkj1"; depends=[AnnotationDbi]; }; rat2302_db = derive2 { name="rat2302.db"; version="3.13.0"; sha256="1k2qm1rpq3xkj52m3n629r4qcqi2azdssb2i5shj9jdaqkmr43qc"; depends=[AnnotationDbi org_Rn_eg_db]; }; rat2302cdf = derive2 { name="rat2302cdf"; version="2.18.0"; sha256="1748rc6yypd7y8wgr1qg632pcsxx0fkxjz6b3z4fhblgdllhy9wk"; depends=[AnnotationDbi]; }; rat2302frmavecs = derive2 { name="rat2302frmavecs"; version="0.99.11"; sha256="0qy5hf86lrkn20yg6d46kcw9fjc0qhsbzbyavaj1v2zl34xvr1ii"; depends=[affy frma]; }; @@ -829,7 +836,7 @@ in with self; { ratCHRLOC = derive2 { name="ratCHRLOC"; version="2.1.6"; sha256="0mgk6lwvvdwjzjh4r1q1q6nfnx4vqx9iy6gmbrb9f31jf30hqnsb"; depends=[]; }; rattoxfxcdf = derive2 { name="rattoxfxcdf"; version="2.18.0"; sha256="0q84lfaxnnj2zbm5q8xswa1md15fjj4i0djnqr835ixzn7px4yqn"; depends=[AnnotationDbi]; }; rattoxfxprobe = derive2 { name="rattoxfxprobe"; version="2.18.0"; sha256="1kp159553rkcn9yh6x3yph3yjz2ja21wi9j5ax03qnhwlsl1x8ik"; depends=[AnnotationDbi]; }; - reactome_db = derive2 { name="reactome.db"; version="1.77.0"; sha256="10hlpjdl5qy9fyjffvh2rq8n5pb7iac8bd4jckfw94p07n8khqkq"; depends=[AnnotationDbi]; }; + reactome_db = derive2 { name="reactome.db"; version="1.79.0"; sha256="1fxyn9bmj2xa0cg3g4bm9hv8l1ji62dfwvlh1y19p5z505x5m8n5"; depends=[AnnotationDbi]; }; rgu34a_db = derive2 { name="rgu34a.db"; version="3.13.0"; sha256="1nl28gia0zh8xkfv8llxiysxk1k1gm6cs2wvl0n1xqhnr0rhla76"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgu34acdf = derive2 { name="rgu34acdf"; version="2.18.0"; sha256="08z9f16xp1m2mwl9vlmbffxl4zyyl8cgzf6wp66rrm32lvl0nbwq"; depends=[AnnotationDbi]; }; rgu34aprobe = derive2 { name="rgu34aprobe"; version="2.18.0"; sha256="1gjxyq9128jgv3ic386f84rajgf3wz7yi2dja80y0ff4m0a48dlh"; depends=[AnnotationDbi]; }; @@ -843,7 +850,7 @@ in with self; { rgug4105a_db = derive2 { name="rgug4105a.db"; version="3.2.3"; sha256="0lq8k95qm0q7j65nf16p3f09dn9zs87n3k561wxrgi2lb0pf6j40"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgug4130a_db = derive2 { name="rgug4130a.db"; version="3.2.3"; sha256="0zlcn9spw23bj3px9z1l2f5afn09zbr6rv0nbd2h6dd12wrvy1zk"; depends=[AnnotationDbi org_Rn_eg_db]; }; rgug4131a_db = derive2 { name="rgug4131a.db"; version="3.2.3"; sha256="1r272jf9cflf1yf4bznp4d59h7bd7adh1i3rf890h5ffc0xzf5cq"; depends=[AnnotationDbi org_Rn_eg_db]; }; - rhesus_db0 = derive2 { name="rhesus.db0"; version="3.14.0"; sha256="1ym8w2jhpx64rv1vk3vgsc1dbzs2f6zw17gvw6j992xg5dq0ly0w"; depends=[AnnotationDbi]; }; + rhesus_db0 = derive2 { name="rhesus.db0"; version="3.15.0"; sha256="0iqn7cad6rhlkbyhw8ldc85z9fzs28hybb80pc6j7p0a6k3va6ny"; depends=[AnnotationDbi]; }; rhesuscdf = derive2 { name="rhesuscdf"; version="2.18.0"; sha256="0q2alkxm80wkzaf0q80df27q30qkswybavz05x6ywsihbs9h0nb8"; depends=[AnnotationDbi]; }; rhesusprobe = derive2 { name="rhesusprobe"; version="2.18.0"; sha256="0fd8pvwvpcmx41k80nbccjxllh39fvjf7l9dr8facisl1x7gsfil"; depends=[AnnotationDbi]; }; ri16cod_db = derive2 { name="ri16cod.db"; version="3.4.0"; sha256="1xz533vxjdyxx1wkks0kgk6b90sxs44iqcsvyds0xcm573bx8c6q"; depends=[AnnotationDbi org_Rn_eg_db]; }; @@ -883,8 +890,8 @@ in with self; { vitisviniferaprobe = derive2 { name="vitisviniferaprobe"; version="2.18.0"; sha256="1ggz1s37dwvrkhj4vx2civyhap7bgqsshy33lk14z4fjsayfi39a"; depends=[AnnotationDbi]; }; wheatcdf = derive2 { name="wheatcdf"; version="2.18.0"; sha256="1gmbrdilqvm54h6nkb1cm01ki8aipiywd4qj8gpwlm2hqrimr8kr"; depends=[AnnotationDbi]; }; wheatprobe = derive2 { name="wheatprobe"; version="2.18.0"; sha256="1fifi3pvzdrg356idwz0kx7qlf5mssdxlyvwpn3cjgw0z7n7cnw8"; depends=[AnnotationDbi]; }; - worm_db0 = derive2 { name="worm.db0"; version="3.14.0"; sha256="0dlllq0m6k0kmndxri1y6csjk7wbl1a2b52pwx1rc76xxm6rcxb3"; depends=[AnnotationDbi]; }; - xenopus_db0 = derive2 { name="xenopus.db0"; version="3.14.0"; sha256="1g26c9z0h95yyr3mshjwlpsnyjpipjfka9pndl8zpri9vq9gr9ny"; depends=[AnnotationDbi]; }; + worm_db0 = derive2 { name="worm.db0"; version="3.15.0"; sha256="0xv5b7mblx25rqm2g018jdch05c0djq83sa764ck4ps8nzk4yzws"; depends=[AnnotationDbi]; }; + xenopus_db0 = derive2 { name="xenopus.db0"; version="3.15.0"; sha256="1crz6wyz7aczpy7xfl4yh1l34lv0ldvqb64qd0mnclsvx1222mm1"; depends=[AnnotationDbi]; }; xenopuslaeviscdf = derive2 { name="xenopuslaeviscdf"; version="2.18.0"; sha256="1bcz1hr7gxw6ac4qvw0giph6hfcf5i9b11s274ypq512qc1d32iq"; depends=[AnnotationDbi]; }; xenopuslaevisprobe = derive2 { name="xenopuslaevisprobe"; version="2.18.0"; sha256="0prb14zn2gvgxq8w0y21x1ng51cn3bgjhkppf7zkmnq1xkzvq0pw"; depends=[AnnotationDbi]; }; xlaevis_db = derive2 { name="xlaevis.db"; version="3.2.3"; sha256="0cdi71c8pflb8n4yfxc0wmfi51w6z0dlz7nw5hv0hkx547v79d53"; depends=[AnnotationDbi org_Xl_eg_db]; }; @@ -896,7 +903,7 @@ in with self; { ye6100subbcdf = derive2 { name="ye6100subbcdf"; version="2.18.0"; sha256="1169hv56981b915rlr5w5sn6ppyjd8as7f4k1hbjzadrdrl3glwp"; depends=[AnnotationDbi]; }; ye6100subccdf = derive2 { name="ye6100subccdf"; version="2.18.0"; sha256="0mhr4zd33gfvvivc17k7fb6nvmhq6h3q0xbx2zl09zd6qk09kizm"; depends=[AnnotationDbi]; }; ye6100subdcdf = derive2 { name="ye6100subdcdf"; version="2.18.0"; sha256="11b1fflgc34lrj4yf1p7way5n83cm9c7znsbxpzlwddwyy8qib30"; depends=[AnnotationDbi]; }; - yeast_db0 = derive2 { name="yeast.db0"; version="3.14.0"; sha256="0qvy276z44n04m08ixxvflv4ai11mmcxjgzn8zmw00k5ibzzg0a7"; depends=[AnnotationDbi]; }; + yeast_db0 = derive2 { name="yeast.db0"; version="3.15.0"; sha256="0k3fp0zxyybgy0dp4i4kckdrcbmx22fgfw11qj97m9vcy3l0rvvj"; depends=[AnnotationDbi]; }; yeast2_db = derive2 { name="yeast2.db"; version="3.13.0"; sha256="0aqbs3p6f3sc6nyggyk7gvg191b551rwq20009fnk0li50dg1ps6"; depends=[AnnotationDbi org_Sc_sgd_db]; }; yeast2cdf = derive2 { name="yeast2cdf"; version="2.18.0"; sha256="0c68val9x8bfnv4xx0vag9dxwsx5q8dzbj0dpha3nshh12jw48w9"; depends=[AnnotationDbi]; }; yeast2probe = derive2 { name="yeast2probe"; version="2.18.0"; sha256="125nif693qcmxc0nnnz917f9avggcdr8g9rfvx2qdc54a2l7vdb7"; depends=[AnnotationDbi]; }; @@ -905,7 +912,7 @@ in with self; { ygs98frmavecs = derive2 { name="ygs98frmavecs"; version="1.3.0"; sha256="1xrm1209xnknwvad7nvg1a0mbxz15z12yd4x5bia3cq03zcmzf9m"; depends=[]; }; ygs98probe = derive2 { name="ygs98probe"; version="2.18.0"; sha256="0awf6z4j2vb2jk9a9j2r512yd3m31660y68pasa9mp488m270a3q"; depends=[AnnotationDbi]; }; zebrafish_db = derive2 { name="zebrafish.db"; version="3.13.0"; sha256="13a65jxr3r5qjf82h1dr0k9qq20g14canqgqdd11k9gk5h31xhc7"; depends=[AnnotationDbi org_Dr_eg_db]; }; - zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.14.0"; sha256="02b425gkhlwc8h6vfv1aq86w06v2zfxfpsy6pw0vljvvaqiqrzj0"; depends=[AnnotationDbi]; }; + zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.15.0"; sha256="15ysjz7x935aadapwnlgg57rwiwgs49wlcaak348w6x4rbk7sldz"; depends=[AnnotationDbi]; }; zebrafishcdf = derive2 { name="zebrafishcdf"; version="2.18.0"; sha256="0sq1xqhblbilvaiabhqyl9gxdj3jg576vgq8v0cls1zvvx0isrx0"; depends=[AnnotationDbi]; }; zebrafishprobe = derive2 { name="zebrafishprobe"; version="2.18.0"; sha256="1pb8z2rdhq11hq391xyi236scyafbp56kbhhwsnha36yygz5drw0"; depends=[AnnotationDbi]; }; LRBase_Ath_eg_db = derive2 { name="LRBase.Ath.eg.db"; version="2.0.1"; sha256="1f9yp9rfaydzz24bhl795379clcinibi4kavxzzavrvqfvkrgw84"; depends=[LRBaseDbi RSQLite]; broken = true; }; @@ -996,6 +1003,7 @@ in with self; { MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.15.1"; sha256="0plldymwirg8hyj9yv5jw4ldrlnvf5dx60gymb8rgmmxvrmhay66"; depends=[MeSHDbi]; broken = true; }; MeSH_db = derive2 { name="MeSH.db"; version="1.15.1"; sha256="0ixlxcakcc9f6d3dzxfdda4nh5gnivqvbi9dw7c85c0145dgnpzx"; depends=[MeSHDbi]; broken = true; }; greengenes13_5MgDb = derive2 { name="greengenes13.5MgDb"; version="2.0.0"; sha256="0j4pd653vlfpd9gq6gi459lra8xhyknjrzadkx9d3zjy0hcwpj7r"; depends=[]; broken = true; }; + org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.14.0"; sha256="1fs68n9xyia6v9jj8a91asmrirnh2xkqcgrjbzk7x6ss0rlwcl7w"; depends=[AnnotationDbi]; broken = true; }; ribosomaldatabaseproject11_5MgDb = derive2 { name="ribosomaldatabaseproject11.5MgDb"; version="1.00.0"; sha256="04ppa4k8p54bmkq3jm41h0v4lb5hz95cmnakfzmqfml00ir04mxp"; depends=[]; broken = true; }; silva128_1MgDb = derive2 { name="silva128.1MgDb"; version="1.00.0"; sha256="0pwwxxa55d3919rbczg5iskd03ignimk80m52kfi930b1kdg9qc2"; depends=[]; broken = true; }; } diff --git a/pkgs/development/r-modules/bioc-experiment-packages.nix b/pkgs/development/r-modules/bioc-experiment-packages.nix index a9538155788..56855a19412 100644 --- a/pkgs/development/r-modules/bioc-experiment-packages.nix +++ b/pkgs/development/r-modules/bioc-experiment-packages.nix @@ -4,415 +4,420 @@ # Rscript generate-r-packages.R bioc-experiment >new && mv new bioc-experiment-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.14"; }; +let derive2 = derive { biocVersion = "3.15"; }; in with self; { - ABAData = derive2 { name="ABAData"; version="1.24.0"; sha256="1wgniq7ibvjj6dx63ixr3i5yclqmg94qpifzfbzzn9yjj3wnikzr"; depends=[]; }; - ALL = derive2 { name="ALL"; version="1.36.0"; sha256="0s591k9dvh5kfnxhc8agpbc40pqn1kpqqs8rpcyvf4kyzncsz5lb"; depends=[Biobase]; }; - ALLMLL = derive2 { name="ALLMLL"; version="1.34.0"; sha256="0qdjfx4d33ymn42jy0jvp4xlmmwr8c5zss1x4b1rl6nmbdckh3ns"; depends=[affy]; }; - ARRmData = derive2 { name="ARRmData"; version="1.30.0"; sha256="16rw9ww9vp2zs135z91vcc0qvdqsqfmymip7n46a27fahc25s3gz"; depends=[]; }; - ASICSdata = derive2 { name="ASICSdata"; version="1.14.0"; sha256="0nb2im2zjz2xi7silh10jf5f7a7bvjvwn7ly0wdzc1bynnbk13f7"; depends=[]; }; - Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.30.0"; sha256="1ib8ax0msq77izdj5v50y5z650cs48v4r1q6xjkbz96m940fl5rq"; depends=[]; }; - Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.28.0"; sha256="0p4yvhdyff6ac5ffgfhap34604dhpqqzxi9c8ib35cm6xsaj27r1"; depends=[]; }; - Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.32.0"; sha256="0snf0rabqjx80xaj3fp3rdwdvnhx963ywpqkjvzgxcyzdz1jlnan"; depends=[]; }; - AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.32.0"; sha256="0n9pxzw495lgfc93b1bqxl6gfl33vvj5nch4525i8yk5xczg253g"; depends=[]; }; - Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.32.0"; sha256="1jj5sr5xaqxajvc6bzrg54hf79qbl71r2dr1akbdf263p1vw9yi9"; depends=[]; }; - AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.34.0"; sha256="0bm1wmyf3kslh720299nkffrfvshfz4n61kpl2cf8mixjr82smwz"; depends=[affy]; }; - AneuFinderData = derive2 { name="AneuFinderData"; version="1.22.0"; sha256="0p68zdw86bf3ggw6rdllyyfvsmrdkwf79xh5p3g5cn5gm19c61xy"; depends=[]; }; - AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.24.0"; sha256="1lybp65n59gqcixyhqh49v4acl8mmmwyyicjmbks84fpjzkkqzqf"; depends=[]; }; - AssessORFData = derive2 { name="AssessORFData"; version="1.12.0"; sha256="0v9xlm2wxlarbhj57jacn52hlxxylyfmr1gwmkss2pzw3hjyi4v1"; depends=[DECIPHER]; }; - BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.32.0"; sha256="1zl54rg50v1m19fln1j1a3a22xi989sj8kk7ccjjgjhybsrvyi0r"; depends=[beadarray GEOquery limma]; }; - BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.2.0"; sha256="0fmjqwwnxlfpwl6ldhq92w9cxf4x4fcm349xk3jx8q8mj20zfsm1"; depends=[ExperimentHub minfi]; }; - BioImageDbs = derive2 { name="BioImageDbs"; version="1.2.2"; sha256="19wb8lzm11lyiiv1a57vgzpgzbnlm8s61bipqdaxpf7b5baajnwq"; depends=[animation AnnotationHub EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; }; - BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.14.0"; sha256="1nx55qhkkjvmljby04wn0fmbgcrdmqxqgxf5h4dasw884msfha4d"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; - CCl4 = derive2 { name="CCl4"; version="1.32.0"; sha256="1ljjj2fk4cji4aw2j8kf4rjgfjfbdyg8sfhvahvpyqgqwvmsmdx5"; depends=[Biobase limma]; }; - CLL = derive2 { name="CLL"; version="1.34.0"; sha256="017kjpv5rqn6vg3d4drnxj7arjxqw1hw1lxx9p0bdzr2isahcs6g"; depends=[affy Biobase]; }; - CLLmethylation = derive2 { name="CLLmethylation"; version="1.14.0"; sha256="1b3pbf3rzrl9by95gkmj3ssd1qms3hm24s1ds286jvps1y8gq97m"; depends=[ExperimentHub SummarizedExperiment]; }; - COHCAPanno = derive2 { name="COHCAPanno"; version="1.30.0"; sha256="1457af5xpryp1z8nwmrqrxp09lsvpwj4pg054w49c8g0ab6ani3m"; depends=[]; }; - CONFESSdata = derive2 { name="CONFESSdata"; version="1.22.0"; sha256="1jhh76nccr2zd11layy68fbwcwzxx1b7f66mmdfxhv6fmiwj1bh6"; depends=[]; }; - COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.30.0"; sha256="0736axlg1rl3frxgh8mkxcnimz2skc8kx17z627i9ww5bl91f5md"; depends=[]; }; - COSMIC_67 = derive2 { name="COSMIC.67"; version="1.30.0"; sha256="09c317gkj53c7la3cd3x9b9hmz5zaccr5irhlnvidfmh1gp4z7r8"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; - CRCL18 = derive2 { name="CRCL18"; version="1.14.0"; sha256="026j77hzj664pmdyrkcxq93bz5xlpq4vr95ps2vynhwalhi382hc"; depends=[Biobase]; }; - CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.26.0"; sha256="1mk7xwxxw08wv9xnmk9szm7a90di2lp1wb35a206jr7kb3m4zx2i"; depends=[Cardinal]; }; - CellMapperData = derive2 { name="CellMapperData"; version="1.20.0"; sha256="143x9j5shnqz1s816gwi7q79np38gwq0iccc9sdl8yvxhjdw0079"; depends=[CellMapper ExperimentHub]; }; - ChAMPdata = derive2 { name="ChAMPdata"; version="2.26.0"; sha256="1zgikb6milp77kcfbizqc5ja94n6zx7pm77rg20j4v5nvpff7lh8"; depends=[BiocGenerics GenomicRanges]; }; - ChIC_data = derive2 { name="ChIC.data"; version="1.14.0"; sha256="1la6z7rd2h8annymgvybrrw31af37pqydp5wj32bpz6fcz21bx7h"; depends=[caret genomeIntervals randomForest]; }; - ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.32.0"; sha256="0hbw1asyajqmshw0j897ss60yl350jl48pywnyvhkaws8bz1iina"; depends=[bigmemory]; }; - ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.18.0"; sha256="1q6lg5dkvmwfjaw771x008ipzynd0jhap97rnkmcivsf84sw03nb"; depends=[]; }; - ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.32.0"; sha256="0z7hxd7nsg1p3z1min5dcdbwgz9n3p7saad0mmvj7388g48fqwc3"; depends=[affy hexbin limma qvalue statmod]; }; - CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.10.0"; sha256="1rxs2lyz5rz3zjl4z34n8iag76ks6gjaalh2adzs6dy9xnzbjnpm"; depends=[]; }; - ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.30.0"; sha256="06dbyh9d7i11rzm13i0pnpn8qhd9kia8my15vs7m26cmf9b53z4j"; depends=[]; }; - CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.12.0"; sha256="0kkjbw1aw0fbj5mgbxq1s811v9c5fgbiv6h5qj41cp8rbghf99lp"; depends=[ExperimentHub Rdpack]; }; - CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.26.0"; sha256="1zsp03s6crrq1awhwqnn94lpmww7iraymjjxb7195b6cyyljf4ai"; depends=[]; }; - DAPARdata = derive2 { name="DAPARdata"; version="1.24.0"; sha256="1wxgcdkz6vsicak21z9ibknqqmj7jka00rkprjav8vyw30jgrgl0"; depends=[knitr MSnbase]; }; - DExMAdata = derive2 { name="DExMAdata"; version="1.2.0"; sha256="1wlh9gsrkd6njx5g5g2q2i7mqznfmy0cd1p7r18lf8v65mn3k0bi"; depends=[Biobase]; }; - DLBCL = derive2 { name="DLBCL"; version="1.34.0"; sha256="1y23bk5ywkdw57a6y4sgwz1h4jm81djxnhxw7xp9xdv1kwg6p8fj"; depends=[Biobase]; }; - DMRcatedata = derive2 { name="DMRcatedata"; version="2.12.0"; sha256="0z5jlmarvakmq5vl8pyym544xsy8rds1fprvjy0s8q6iw2y3iknb"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; }; - DREAM4 = derive2 { name="DREAM4"; version="1.30.0"; sha256="0gr0n8j4a347c5wwnpq2z2gxpvxv3swfhhlj3izc8rdyw11cf41v"; depends=[SummarizedExperiment]; }; - DeSousa2013 = derive2 { name="DeSousa2013"; version="1.30.0"; sha256="1lkzzamwby4xfjj7ffnhmnxcwjaspvr7z3ijwrymd2pky46pq143"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; - DmelSGI = derive2 { name="DmelSGI"; version="1.26.0"; sha256="0zii8zrqlmcl1cvdvsiikah0yg7h2ssj571j7fgh3cz95c9mdjhf"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; - DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.32.0"; sha256="0dnp01n5lmssb7pxyrgx0ks9cxkb5xk6ni3n5f3l6gc6a0lrv9zz"; depends=[EBImage]; }; - DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.4.0"; sha256="10928x20i84f81ma6wdxkkii1l0pah2wbxvj8ady4gm04s7klvnb"; depends=[AnnotationHub ExperimentHub S4Vectors]; }; - DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.30.0"; sha256="10w2sj29bchry0w4340s48944kxy764wbp680a27jfcw0phwqw1n"; depends=[]; }; - DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.12.0"; sha256="0x9nlhjfks2n834x9acmcw2hdlpqxw7ac1gqdwiphcdkzwwnpfmy"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; - DvDdata = derive2 { name="DvDdata"; version="1.30.0"; sha256="18as6sqfsfwgry1pm47h716c1nhcjfn82g6r9r3zs5kcvpr4phs7"; depends=[]; }; - EGSEAdata = derive2 { name="EGSEAdata"; version="1.22.0"; sha256="1qzc6ir1w6s2l2kw1mb8l1sxc053f8bp5b9nllybbkpa7ialcz8y"; depends=[]; }; - ELMER_data = derive2 { name="ELMER.data"; version="2.18.0"; sha256="00cnici4cnp5sw8ll9xvx1zw5qkjixyp5zffllw7qxp2q4v709z3"; depends=[GenomicRanges]; }; - EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.32.0"; sha256="12b40z3b4h9681zvyxkaycb26y7slgkqhjx2kwn793qaf5bhgabc"; depends=[GenomicRanges rtracklayer ShortRead]; }; - FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.30.0"; sha256="1y8q8clhxqyy5zdsnv084jzjaslpzlkl0502i3i7ang7g6xh0f8n"; depends=[]; }; - FIs = derive2 { name="FIs"; version="1.22.0"; sha256="0zj3z7rk88s2jchrdkf6rq3ksnhlzg9h86n38kjyv6qbr6hifgkd"; depends=[]; }; - FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.4.0"; sha256="09wphzb2ycp9hlqz5qjmw4r2vwm4fgsjyvcwsvqy0d4k725gkxjd"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; }; - Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.30.0"; sha256="0w60h8xcp1rp4lvq87qfqbj0f497jc4w54463wnac6dbph8bsda3"; depends=[Biobase gplots limma VennDiagram]; }; - Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.30.0"; sha256="1fs6h0dmvigzkqn5iqfzq84zz2dv983w5mwj2bwbq3b9iclc30dg"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; - FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.32.0"; sha256="1js5ibv4kcs5q8xwcla6pz5na7ys7f8h59s91djv8l3g8fl5v0c1"; depends=[minfi]; }; - FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="1.12.1"; sha256="0i8mb6cbdh5gnbp38dsk5qsyx50a1dpsnvjl46q6bx1bdfchzfh0"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi nlme quadprog S4Vectors SummarizedExperiment]; }; - FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.22.0"; sha256="0kb380hq9m90jspgccl68hxxvkslxf67isb0w86x6glpsz8q0bgf"; depends=[minfi]; }; - FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.10.0"; sha256="0xggjhqkd7j0rfypx5armarmvkhl5a1f7fw0iwygrdg5g4804n3j"; depends=[ExperimentHub FlowSorted_Blood_EPIC IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; }; - FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.20.0"; sha256="0yqjy03lf2ihvw3r9pz5cz67rr07i8n8n7dnmzvcbvgvjb98g82p"; depends=[minfi]; }; - FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.30.0"; sha256="1r98f7zr11xl8jilx9xbk9haq1wy5hfbrlbinf3ky7a7g6sz6b33"; depends=[minfi]; }; - GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.12.0"; sha256="0jq8w6hrdqwlv4ya5z4i67d21yy5ksw2lbcqippvifgqxb5impw0"; depends=[]; }; - GSBenchMark = derive2 { name="GSBenchMark"; version="1.14.0"; sha256="06shm71kd75bhlibpkdhzrc3w9200wb0n7dflism4cndx6q256g5"; depends=[]; }; - GSE103322 = derive2 { name="GSE103322"; version="1.0.0"; sha256="1fr766mrkxw77llcnaxz45rhdxmz9vwnylmwcr0vq6jwz2y20zrh"; depends=[Biobase GEOquery]; }; - GSE13015 = derive2 { name="GSE13015"; version="1.2.0"; sha256="1fa38kgm8jb1xf81m6wsb8g9gfsd2brb2yvfqhb5s8n0bgcwys1w"; depends=[Biobase GEOquery preprocessCore SummarizedExperiment]; }; - GSE159526 = derive2 { name="GSE159526"; version="1.0.0"; sha256="0hk5yb0dzlxkf1mcg1kz6lgwff1vxpswsggmhl2zzz10qyrprb6y"; depends=[]; }; - GSE62944 = derive2 { name="GSE62944"; version="1.22.0"; sha256="17dp87ahfch4jmw1d21s20zr28a0qxnw6ly7r7czis1fxxnc2nhi"; depends=[Biobase GEOquery]; }; - GSVAdata = derive2 { name="GSVAdata"; version="1.30.0"; sha256="1yscdsjjq0dyjgx4mws97z5inxlp68gd37haza7k4q9hrdrg2qyc"; depends=[Biobase GSEABase hgu95a_db]; }; - GWASdata = derive2 { name="GWASdata"; version="1.32.0"; sha256="05inid2ch6c7idyp4awvpfdw867mhnsl2k06k0bw0h8hhwnqpssk"; depends=[GWASTools]; }; - GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.2.0"; sha256="0kiqhqc9c46l76spc0fws9qrzhs3dyf2n8nhzq2zjbvxpbnm7hk0"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; }; - GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.22.0"; sha256="0hdpwqbsj4fyg5cbg8zb0gaw1f2w8wxk6b9f3zf6lg3h1grr23p0"; depends=[]; }; - HCAData = derive2 { name="HCAData"; version="1.10.0"; sha256="0l84d13sz6ai87rrv0jvssbvwb8jrrdn6k9l35phxhh78zbl0w1b"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - HD2013SGI = derive2 { name="HD2013SGI"; version="1.34.0"; sha256="1k7igh15bmcqr1ar3xcpiam7wypvkcazswjs97r44m9ib8xjm93y"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; - HDCytoData = derive2 { name="HDCytoData"; version="1.14.0"; sha256="0n1kk4g1agclpmvxy6mqzmik1d5ba3s7q6w5fsmryxbmdslaqgdr"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; - HEEBOdata = derive2 { name="HEEBOdata"; version="1.32.0"; sha256="1nf388mj6iw8z6kx7vwzvmkqcf2xp3srinh8af0rdj97571rqm19"; depends=[]; }; - HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.34.0"; sha256="12dkiif41ailb9bmclk215s9hrl3xsh7w5m6ms799g4lr21hpm4c"; depends=[]; }; - HMP16SData = derive2 { name="HMP16SData"; version="1.14.0"; sha256="12xq1vvxvv16y9szfs5qzmkpi8v8v67vm6yln3kda43x1wfc1naz"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; }; - HMP2Data = derive2 { name="HMP2Data"; version="1.8.0"; sha256="1h4lyxva5hzvdknr7pndq49js0yz62anshaq1apdm3zcga979c2z"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; }; - HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.14.0"; sha256="0z1iid7q5aj429npfmszhx1na4rbx4kzw47dk4153lq63zapdig9"; depends=[]; }; - HarmanData = derive2 { name="HarmanData"; version="1.22.0"; sha256="0dk8anr68c3p8c88xqpvy3v46vgk2w9zdcw0ikg1593xsdhpzp1k"; depends=[]; }; - HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.16.0"; sha256="1ar9m9qkbxbg0n0acv96am6nsvy7gv85787vp3qhdvdq6cmzf39g"; depends=[ExperimentHub]; }; - HelloRangesData = derive2 { name="HelloRangesData"; version="1.20.0"; sha256="0hrllq2hsd92yax3xs1k1rhq1j1zx7l2aiaaxlw4drds36vi2hlh"; depends=[]; }; - HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.14.0"; sha256="1kcaf2slwrm1s6y29n1za5aadzh7hqmiyb9zq9w5k9inxqhdbmg8"; depends=[]; }; - HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.30.0"; sha256="0xqyjj64sqlh5zynqi56nr2jzc4r558bviqiybgv9zxq1m3pqddg"; depends=[]; }; - HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.6.0"; sha256="059sm5lwx2k3h8p2j07k7vg3p85nbgszpfp7q14c1wc350cm275c"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; }; - Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.30.0"; sha256="1lyb33rlaciicz6nj4w5jydgvbib9bi45z3676y78dajpvd8gsmb"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; - HumanAffyData = derive2 { name="HumanAffyData"; version="1.20.0"; sha256="0xvy3vhdi9d944cij15k0yz3gja910kfxrrm29d9m85ga06nzzs1"; depends=[Biobase ExperimentHub]; }; - IHWpaper = derive2 { name="IHWpaper"; version="1.22.0"; sha256="05hppzncnyn8ngr8iy975pmb5y0sq6m1510q8jh3dixwr5vk5zyf"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; - ITALICSData = derive2 { name="ITALICSData"; version="2.32.0"; sha256="13psfxkv4wxlk1fhlvilpw5l4k84xc0f97j0hisdmlm9y57km62v"; depends=[]; }; - Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.30.0"; sha256="1g2jrqz32vlvxn5v1p9pzl99b2qjrq9cxv61zl4rip1k3q9zw7mf"; depends=[]; }; - IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.32.0"; sha256="19jk28hflhycp2mnic594bymqyv2bdwl88rmpmv6ggdc6z6prcll"; depends=[]; }; - Iyer517 = derive2 { name="Iyer517"; version="1.36.0"; sha256="0j6y5p95qrsbv3i953b5xmannvyaahjpvdpydwwpabxflh1rqkg6"; depends=[Biobase]; }; - JASPAR2014 = derive2 { name="JASPAR2014"; version="1.30.0"; sha256="158lyh9j2vm739a4i5bvwcrnffl30wiz2rra2a12iy75klc8bj77"; depends=[Biostrings]; }; - JASPAR2016 = derive2 { name="JASPAR2016"; version="1.22.0"; sha256="1br7rynmhhxbsdhfxssd8wsa2s5zrsfcirx5lz4mcxjjw9ks0x2q"; depends=[]; }; - KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.14.0"; sha256="1kl3h5adaqapkhx3bv0bg8zm05fkanwgyk8zm31shgan0br4m26p"; depends=[Biobase BiocGenerics]; }; - KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.32.0"; sha256="03zakm4hnzm5bpj1is6idpljqg1sfzldv6i6z9rkg36dahcjkgli"; depends=[Biobase BiocGenerics]; }; - KOdata = derive2 { name="KOdata"; version="1.20.0"; sha256="11ar6bp6j615hcqa8w0dha1d57r8kxwjr0aikmxl3j058yrv2p6m"; depends=[]; }; - LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.2.0"; sha256="0c7nwyskm5kx2z56vr8wb1c8ll8z3z7ywi52s4d1nmhmj9dyzmb3"; depends=[ExperimentHub]; }; - LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.32.0"; sha256="1kgydp7x3kdhh5kzwrh9fjc9zfw1jx4bbkgxc46vh1dwz8kbkbch"; depends=[IRanges KernSmooth]; }; - ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.26.0"; sha256="0ag820shlpknc2zbqiwafisbg4hr7paqv3g26ghrvyvbkmqmj1w8"; depends=[]; }; - LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.30.0"; sha256="0sfadyna4njvz1dn0z3vhvyykl864534qr200swj4cmsny52bsdh"; depends=[]; }; - LungCancerLines = derive2 { name="LungCancerLines"; version="0.32.0"; sha256="1clsdv7ryk46i7640sj77xnwqqw32aa9gy9g8hvhg4sliiqmgvjw"; depends=[Rsamtools]; }; - M3DExampleData = derive2 { name="M3DExampleData"; version="1.20.0"; sha256="0qnbd53lhfq78k2v9qpkwpcf75mg9asf6765pqq2f0ivi2a4jrjs"; depends=[]; }; - MACSdata = derive2 { name="MACSdata"; version="1.2.0"; sha256="1k9xslk90ikk2jz0apyvqqz5l6cwxca1cbpfzqjg28rk7md44ycx"; depends=[]; }; - MAQCsubset = derive2 { name="MAQCsubset"; version="1.32.0"; sha256="047dbqd3iy2ckxhsm30h2k98krjyjfl453abpw9840jsicpf5ndn"; depends=[affy Biobase lumi]; }; - MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.32.0"; sha256="182i7jn3i1xf1s4hnpqz3kbvnd5l0dpnqgva1h37l9zah0fjki54"; depends=[Biobase lumi]; }; - MEDIPSData = derive2 { name="MEDIPSData"; version="1.30.0"; sha256="06ip7pcxmn510i1mi3z89bkfcd8k11vmck5xy8bxrs5ck8v7f45k"; depends=[]; }; - MEEBOdata = derive2 { name="MEEBOdata"; version="1.32.0"; sha256="0wig4bsmqn61hj11hzmf44ninx4n1iyvr4y4pp2pzx3aria3gpra"; depends=[]; }; - MIGSAdata = derive2 { name="MIGSAdata"; version="1.18.0"; sha256="1kf16r23v6gvq0w4hkjv8y2rn0nbwssa2p210bs8i3g0rbahyscv"; depends=[]; }; - MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.8.0"; sha256="117shgd11rslc22kw0c5y2a9fs17csr6s101hcbh8rl3x763c3wb"; depends=[Rsamtools]; }; - MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.30.0"; sha256="1w20fyb2bf7hhq6zyv8jal4lvypm031j2ls9dsc3bsywxwr95ikl"; depends=[]; }; - MOFAdata = derive2 { name="MOFAdata"; version="1.10.0"; sha256="1w0bq94ivm070bna64k6z3jv8y4k5wdqffy47kgdn3ncrhcmwn6q"; depends=[]; }; - MSMB = derive2 { name="MSMB"; version="1.12.0"; sha256="08d4him513am05hsrd3i430cwjqw3qpv35b84kdf87cyfvz0wl1n"; depends=[]; }; - MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.14.0"; sha256="04ca666vaa2kshj98s8kx651pa3lmv1v6m2s22qxv34cj1ky54jl"; depends=[]; }; - MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.14.0"; sha256="08cva4f3cb2mygf7i4b44xnsck75sbxfc05lxih478zcgm6n5v1w"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; - MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.14.0"; sha256="1dvzmass9yg53gq26lpv6ic966agbf3y8ci7iq2q3b1ljs3x84af"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; - MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.14.0"; sha256="140ypxhn0ibgisa0rwdpn5pcl9zgi10n4fpbr9v2vmllsfvc74rc"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; }; - MethylAidData = derive2 { name="MethylAidData"; version="1.26.0"; sha256="1hdl459vfqaz545nc1yqssxn235rf26isvg9g8zzxm4hbr4jwh5y"; depends=[MethylAid]; }; - MethylSeqData = derive2 { name="MethylSeqData"; version="1.4.0"; sha256="1n347m96hx5mnfwxv82iaxpl5kqamvqgxpw2s7q7b2wywcis3fdq"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; }; - MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.8.0"; sha256="00yyvm172974ij05h260fd99kk7zjhyli3c7my69x9sfzvnk26xv"; depends=[BiocGenerics BumpyMatrix ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - MouseThymusAgeing = derive2 { name="MouseThymusAgeing"; version="1.2.0"; sha256="17hasz0jklv4l8fafllnhkkacrr8c4bbikdcbnfqfxsqy9am7b6q"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; }; - NCIgraphData = derive2 { name="NCIgraphData"; version="1.30.0"; sha256="12csh0jy8kx7xv14vqsimc3f3vl6ka5j04siq9mwrl026x0jyk95"; depends=[]; }; - NGScopyData = derive2 { name="NGScopyData"; version="1.14.0"; sha256="1plgsrfq8s56f40x0sb9pk2c1pmq4r3qiyjlc8d78a0sd4vn4gxa"; depends=[]; }; - NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.4.0"; sha256="07vc2xw3d3wjbqm17zpz7sp3jmignk5riwrfqbrpwp3bg77xffg6"; depends=[ExperimentHub]; }; - NestLink = derive2 { name="NestLink"; version="1.10.0"; sha256="014knbyz67sq93gvp3ra5ajsarkb51f0v2rbjbq5qr2zr3xafyj5"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; }; - Neve2006 = derive2 { name="Neve2006"; version="0.32.0"; sha256="0hhpcfwpmi3j57w26f4916lv7sj7nrjiffbmfysl5sqsjw0djn89"; depends=[annotate Biobase hgu133a_db]; }; - NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.0.0"; sha256="10y40srz5rq465mhqag2kqz9kpr7qymd41lyyhbc5fvglc8l37js"; depends=[BiocFileCache ExperimentHub R_utils rtracklayer]; }; - OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.12.0"; sha256="1l4rmfdcfafh8pyvz8bsl4rm3859c8ckzw9kv2dc82djgk0b2lcq"; depends=[MultiAssayExperiment]; }; - ObMiTi = derive2 { name="ObMiTi"; version="1.2.0"; sha256="131n0q34xizcw21sjrxcf185qfpxfc8m4xypmp812151f886p405"; depends=[ExperimentHub SummarizedExperiment]; }; - OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.16.0"; sha256="0hw0djfc8bfk51np4x7ik8nr2dscn5wd7gvbr0564yfz2ilf8l6v"; depends=[rJava]; }; - PCHiCdata = derive2 { name="PCHiCdata"; version="1.22.1"; sha256="00902qv6vbhyv36ra3hfyqjf1pg202sv9274pm9dmp2gdmypdw1m"; depends=[Chicago]; }; - PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.34.0"; sha256="1gkjsh0xyn27jrxldkcgyvwpa2b2l81k96j2cls3y4dm9r39g637"; depends=[affy annotate Biobase PREDA]; }; - PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.28.0"; sha256="0fagxhzqr2ri1w93yr7ch1x9d55q8305cfj62gcxkzpi61j8nx1y"; depends=[PWMEnrich]; }; - PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.28.0"; sha256="1pmij8f40ly40prcmcjb7xfd5fpw14s77wvf1nn2vnvq7v232zva"; depends=[PWMEnrich]; }; - PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.28.0"; sha256="148ygn4ak50v6kfznvrbklkr09vl117091vggmc0hzc596w4dnmr"; depends=[PWMEnrich]; }; - PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.22.0"; sha256="0x71whs9m2pr5fcihqql6fkaargpqfr8qkr7z7fqdwbblklzn145"; depends=[]; }; - PathNetData = derive2 { name="PathNetData"; version="1.30.0"; sha256="002qx6p1vh066c2vq4dir7xvgga8nm824x59nv5gmjj65wmlg62m"; depends=[]; }; - PepsNMRData = derive2 { name="PepsNMRData"; version="1.12.0"; sha256="0d4539bm507dm6v2knavacidlwsb5rhr22bb48szfcr5kbn5vk1p"; depends=[]; }; - PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.8.0"; sha256="0j6c301zknfvk9pkz8n3f4ckgxpfk2v4vnad1gv7vmaxz4bwnia8"; depends=[BiocStyle Biostrings ExperimentHub]; }; - ProData = derive2 { name="ProData"; version="1.32.0"; sha256="0k870xnl35x8a5y2kzfkvasabanpmad1f0vmb2waax9h42y2bmdx"; depends=[Biobase]; }; - PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.20.0"; sha256="1mz5w6yb82s91qi8q5d14pvzq8vlpxlnvkr8mv9q4wbmq6m3rwk6"; depends=[CAMERA LOBSTAHS xcms]; }; - QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.24.0"; sha256="1b4d0936lrjn7jp9g9gj3jnkfrw7vw79j15xpyr8d3kqsrkn3j0q"; depends=[QDNAseq]; }; - QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.24.0"; sha256="1iamvkpj5gij2x7j3fixgn3djgly684wrvr888w9cfir6wf5pk94"; depends=[QDNAseq]; }; - QUBICdata = derive2 { name="QUBICdata"; version="1.22.0"; sha256="15saydq9vv1lvqgvv5d51km52aqzwjx7q7ijpka6why442lrys9r"; depends=[]; }; - RGMQLlib = derive2 { name="RGMQLlib"; version="1.14.0"; sha256="0l317dma9cnwhr24k65lhs26n1511chiq8fp0xx4bnxzvw3q7g5b"; depends=[]; }; - RITANdata = derive2 { name="RITANdata"; version="1.18.1"; sha256="1dx743cjhi9713sa0ndvk5w8m8p0zxbp9xdw1ssincgqyv1n02qb"; depends=[]; }; - RLHub = derive2 { name="RLHub"; version="1.0.0"; sha256="1i3i1dp5b04xmkgz6lf3fdk0bag23as4f42pcqncalxavgf3c3vm"; depends=[AnnotationHub ExperimentHub]; }; - RMassBankData = derive2 { name="RMassBankData"; version="1.32.0"; sha256="1m268dd3wl92l3vihqijcxy1iif7qw3i3vlqhjq18qmc11i55qp2"; depends=[]; }; - RNASeqRData = derive2 { name="RNASeqRData"; version="1.12.0"; sha256="0546d7p29vra6n54ffnjxz0ajb9ih90m01xx3b9p56v2s4x0wia4"; depends=[]; }; - RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.32.0"; sha256="0gcvhqpb0h0d0p2rr4vnh24a2flc4m502gyqb0gikk1sfd4jf6jz"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; }; - RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.8.0"; sha256="1zinj1m27khxmm6qwdl6zmydw505df2lsdfh4hfrnrp0yhwhp0g0"; depends=[ExperimentHub ExperimentHubData]; }; - RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.32.0"; sha256="1bgz3i5x0f3940dk4nynxd4r5ji79rs81fwz9iq8br8srssdb4bg"; depends=[]; }; - RRBSdata = derive2 { name="RRBSdata"; version="1.14.0"; sha256="19k7dlllf77ymn84zh22qiv1xhjv6k5i6ss9fa1w7slps17k8l1g"; depends=[BiSeq]; }; - RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.22.0"; sha256="0884c8idabmpz8jyz1gpvayv2h9i164642pnk5n8a68g8djad9zd"; depends=[RTCGA]; }; - RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.22.0"; sha256="1daqpw0vipdagrr7p6q4h6plfa7dwk6nj421s9wa78wm8rda70s7"; depends=[RTCGA]; }; - RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.22.0"; sha256="0vi7kryzxj42n21xa0nmnjxyskqdqv5fmgh2bjj4fx9al4jqc4n2"; depends=[RTCGA]; }; - RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.24.0"; sha256="03d8b7pp2dpr07bjx952d9m6x8nn267dl9qa368gh0pv8vcwjmj9"; depends=[RTCGA]; }; - RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.22.0"; sha256="0ivlp5izz9rls5347lkdl6cc8q94y2s24hxbla49p514pb959pwv"; depends=[RTCGA]; }; - RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.22.0"; sha256="0c547sp6kpzx0s1321y61fr09r420j6sc08qd4v0jp9nd10j1mv7"; depends=[RTCGA]; }; - RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.22.0"; sha256="1qlnlhki58j82mz8yv4nd334xgkcq4h4hk51ma9q7fc28ssbnfwp"; depends=[RTCGA]; }; - RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.24.0"; sha256="0diaxx1484nq4avmsvqs7w0dcpy36kjllklr9wx4r9zmmw098yyg"; depends=[RTCGA]; }; - RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.24.0"; sha256="09hr3fm8yrdyhzfrwxk59y2fdl2yg449v0na0i6im9as38zki9zb"; depends=[RTCGA]; }; - RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.14.0"; sha256="1i5hd120jc6h23vxaf5pylnji1jig9ryml1hqrrldw7wnr6iqcl5"; depends=[Biobase]; }; - RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.14.0"; sha256="06isc22wgwynrx9y55fkaqw6240866k400n8dfmn4pdrx3zwzhra"; depends=[data_table]; }; - ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.8.0"; sha256="1gpy8hbib6zldi5pwmdiqfy1pg5b4i0s6hv8x41cbryvmgx718bx"; depends=[edgeR limma ReactomeGSA Seurat]; }; - RegParallel = derive2 { name="RegParallel"; version="1.12.0"; sha256="1px5j2i7gdsb2ccx556knx4dyr7wibvspgi28ja4qlsb9gn4xnin"; depends=[arm data_table doParallel foreach iterators stringr survival]; }; - RforProteomics = derive2 { name="RforProteomics"; version="1.32.0"; sha256="01vqkdk615r84vwczdvciw3vji4rknj8jgxz38jw2gpvi5pdiray"; depends=[BiocManager biocViews MSnbase R_utils]; }; - RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.26.0"; sha256="1r9hac14p4a0696v7n4vvxfnmsp6snvwyh0gz6h2ch7cdnp2ny0d"; depends=[GenomicRanges]; }; - RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.26.0"; sha256="0kcqa4zhb8i5104p1qyfdp4h50x60vns4dzr663vyhkcm7y8phhg"; depends=[GenomicRanges]; }; - RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.2.0"; sha256="06g1ys8daxjjry0zbdhilip529zamj99ing1impxnnr2kv1s3as2"; depends=[GenomicRanges]; }; - RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.26.0"; sha256="1m7fvapwqaqfz7sjvapb4s7glcnpf35cxdg4gwi4qpjz3qq6fn95"; depends=[GenomicRanges]; }; - RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.26.0"; sha256="1maywqb83036rjw7c6y14vcmlk0kimh54wkjvv1chqkf61a41wyh"; depends=[GenomicRanges]; }; - RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.26.0"; sha256="029qlllnvi63jkxj8fhqzp02sl5cay2n046a1ghnwrbjf8ax3qby"; depends=[edgeR]; }; - SBGNview_data = derive2 { name="SBGNview.data"; version="1.8.0"; sha256="1xcicqsyvvgb3bwxzw6pw0xvrhrvswjp5piqmkdqv1d747mci58b"; depends=[bookdown knitr rmarkdown]; }; - SCATEData = derive2 { name="SCATEData"; version="1.4.0"; sha256="1zaysac53dv4q2w93bdmmnva5p4h63bp752h3kgik91p77i8vg95"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; }; - SCLCBam = derive2 { name="SCLCBam"; version="1.26.0"; sha256="087ypaaqb4a44jk6fqnh8z4i45384zr6riv22z1kwcx3fpybc5zx"; depends=[]; }; - SNAData = derive2 { name="SNAData"; version="1.40.0"; sha256="1ng54ccaarbsfqak4gvx680rfpskp90ravif0n0iminqmfm596sg"; depends=[graph]; }; - SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.30.0"; sha256="0piqsm9mbiqaf9i0ljj64brm7qdyp7zzhxd8qm3xja0hmh69gigx"; depends=[]; }; - SNPhoodData = derive2 { name="SNPhoodData"; version="1.24.0"; sha256="1x9xxg9dmmphwdm6is2hv3awk9cl9hff8zw2nvjngi2iwxdw5sys"; depends=[]; }; - STexampleData = derive2 { name="STexampleData"; version="1.2.0"; sha256="1xiw6g9aidgppbsn9rsh9ckacrz8sym0j5ink7rv6pwirjnymc27"; depends=[ExperimentHub SpatialExperiment]; }; - SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.26.0"; sha256="0k6zznv9ai9ib011yq48zzpdk8qik5ms9388dcw4k90zirnmd4ii"; depends=[]; }; - SimBenchData = derive2 { name="SimBenchData"; version="1.2.0"; sha256="01k5p00lrczk7xww7xkj880aj5x14sgwbvgl7gmqrzqw69x0d3ns"; depends=[ExperimentHub S4Vectors]; }; - Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.22.0"; sha256="0vgf7pl31vdmn5wbm7jhbbhv46bi3p1fb1cgzi2lnzg1m5y117wd"; depends=[]; }; - SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.6.0"; sha256="1gbf52bs87ypszhj7a6v7ggbqznbfj77p0xy17aygnqlpg1rls43"; depends=[AnnotationHub BiocFileCache BiocGenerics ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.2.0"; sha256="1knajc7bjiylbkdz97vcs0m7m9m2yvzp6pilglkxnrrqjc9r2d86"; depends=[ExperimentHub]; }; - SomatiCAData = derive2 { name="SomatiCAData"; version="1.32.0"; sha256="0x5ygnc4bgqqwap1919hw69hmy3d3r5svyssihrhqp9a3jp55yag"; depends=[]; }; - SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.30.0"; sha256="0wwphjr94kavb45xhsjfhqcyjisanl511in4kn3din1m291xsl3m"; depends=[GenomicRanges IRanges S4Vectors]; }; - SpikeIn = derive2 { name="SpikeIn"; version="1.36.0"; sha256="1z04cqp2p445zdnhkblyy4lk0flmq1x1ir32sqn1kds1nkmv0ws8"; depends=[affy]; }; - SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.34.0"; sha256="0adzr1072rr2zbwmhzg6h3m00w4dxpz9c3f24hj6gf6w9gzk79a7"; depends=[affy Biobase]; }; - TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.30.0"; sha256="1y1dgnqa3f80x8j8pw02dd4zb40q86v1qp7102lkhnppvb3b3f2j"; depends=[Rsamtools xtable]; }; - TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.30.0"; sha256="1qymmnvpic4nz93079r5kxb9yi7y6qcjq39rz5mmcp15q73lpfqk"; depends=[]; }; - TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.18.0"; sha256="17iq6g93bxzzgsv255ab68crcr5haim57fxx6shjy8ww2ab6522k"; depends=[SummarizedExperiment]; }; - TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.14.1"; sha256="0h8k8bq64c9l70li2jzjmwillxsdmp06f3kikzxhys0xhdkcaanm"; depends=[]; }; - TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.14.0"; sha256="09ccilwf4kvwgaglk5ar5b6c7pyh3b21r0vg6ibb57ilbv85srqd"; depends=[Biobase]; }; - TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.14.0"; sha256="0njs301kfbchhcy4i8ldlpv7z9lsj4hm1ivb4w2r75qkaalmgi7s"; depends=[Biobase]; }; - TENxBUSData = derive2 { name="TENxBUSData"; version="1.8.0"; sha256="1smvgqym0jd5m3as8pjyl9dhnfbh02sdh2sxb2hr89133fh6mx6a"; depends=[AnnotationHub BiocGenerics ExperimentHub]; }; - TENxBrainData = derive2 { name="TENxBrainData"; version="1.14.0"; sha256="1fhhsrariacvd63ngvs348q6cvp4kmjfjzsl2k3a4r8ci3y4snzc"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.12.0"; sha256="0gb6ji84zk2shz4y10mcccvamz7840qm21nsw8pczq90g0x2vz1g"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; - TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.2.0"; sha256="175mnl0axzhvfp49g4hwplcr0p064yzh77wn30z8m738ckkwz5gr"; depends=[ExperimentHub SpatialExperiment]; }; - TMExplorer = derive2 { name="TMExplorer"; version="1.4.0"; sha256="0l5rs379mg5nwqbfv1kpgqbwjbym82g0wq3354fcvp6w91bskspz"; depends=[BiocFileCache Matrix SingleCellExperiment]; }; - TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.12.0"; sha256="1ncv97h21w9qy7gqz25wsayq6y01siaxc5cll4c8r0nsh3hprnjc"; depends=[ExperimentHub]; }; - TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.0.0"; sha256="1apwhg418s3vmqk28smj2ac54dzbayvn9bd8pn5gnqijcziy6j6h"; depends=[AnnotationHub ExperimentHub gdata HDF5Array SingleCellExperiment SummarizedExperiment]; }; - TargetScoreData = derive2 { name="TargetScoreData"; version="1.30.0"; sha256="11j7nc0k86qk3jgqhiarwawlzih86s8xdsiwllsnrp8i3ddwfq8x"; depends=[]; }; - TargetSearchData = derive2 { name="TargetSearchData"; version="1.32.0"; sha256="11gs90jl3z95b2pp2v2lgfibk0hmkkp6waf9pnhw68kp38iv1n7w"; depends=[]; }; - TimerQuant = derive2 { name="TimerQuant"; version="1.24.0"; sha256="1phyxfdljbx6k7l2lmrzs764yx1y9w4hj415zzpqs3i8skf83pf2"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; - VariantToolsData = derive2 { name="VariantToolsData"; version="1.18.0"; sha256="0xa3bwjf255ff65fphxn0mn39j1f6f5k8snpbwy0qrrcv6a5ksky"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; - WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.26.0"; sha256="0857mgrscvdi4r6bzijb411vjh9nprgi0vda3b14rh2kz5py8y5k"; depends=[]; }; - WGSmapp = derive2 { name="WGSmapp"; version="1.6.0"; sha256="0vzpvhz4s68jdjpli6pl18y804wdcc1xb8d1lz0lywg2shf2vfhf"; depends=[GenomicRanges]; }; - XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.32.0"; sha256="1xj5sdqvp9zfgk5hk2zqr5jjfym6zv7h94j1kir11pbxy9h4j2i9"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; - adductData = derive2 { name="adductData"; version="1.10.0"; sha256="0bp74p06gskwn2xl1srpnmsq27ajsrlynkzw6fcmvwwjcrzljmnj"; depends=[AnnotationHub ExperimentHub]; }; - affycompData = derive2 { name="affycompData"; version="1.32.0"; sha256="1f4c57clh0xzsj3vvx7bv0hdjgj7fj4zfzxbm0cavmp6khvgd6ng"; depends=[affycomp Biobase]; }; - affydata = derive2 { name="affydata"; version="1.42.0"; sha256="184zrqgl0hnzqshjjpzqb41nry6c7sxqkj4lxn8217444pqq8i94"; depends=[affy]; }; - airway = derive2 { name="airway"; version="1.14.0"; sha256="16g8lcmdj57i4ggnq2kwklpnl53dwgwkajnzkkl0p3473zcxqihs"; depends=[SummarizedExperiment]; }; - alpineData = derive2 { name="alpineData"; version="1.20.0"; sha256="0lbk3b4jnbhk1xbxzs7liz03gq05d3vsy762wm299gdqwhd1c2rq"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; }; - antiProfilesData = derive2 { name="antiProfilesData"; version="1.30.0"; sha256="1bizxdj5jamf5vby1rswplljnffay2zvz85gd8prr838z22c8sb7"; depends=[Biobase]; }; - aracne_networks = derive2 { name="aracne.networks"; version="1.20.0"; sha256="1h0f1n8cr3pfrnv2v37b1xlmqv603qdgc886w25vdgkplkm2i00b"; depends=[viper]; }; - bcellViper = derive2 { name="bcellViper"; version="1.30.0"; sha256="1x55zqb3vbgkz608vw41h75yj76xim235vnzn4n7kk13ysfagk3g"; depends=[Biobase]; }; - beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.32.0"; sha256="1k9b6f9qr9w2fzlid53ij8v1ribyxa46r3wagyrdpspz0lw1chgl"; depends=[beadarray Biobase]; }; - benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.8.0"; sha256="1434pf9jrgjpvx1rd50zi8010rzd3kdlj7ryvp1q6ivw9r90mq6j"; depends=[ExperimentHub SummarizedExperiment]; }; - beta7 = derive2 { name="beta7"; version="1.32.0"; sha256="0m2mq9slb1yqjhk5y4sqclhm92j7q0a1rkh290j73ql2x90acb5y"; depends=[marray]; }; - biotmleData = derive2 { name="biotmleData"; version="1.18.0"; sha256="1hsabj556jsiq3g466fqwq4lfy01bh3riv0c9jms43gd0l414ic8"; depends=[]; }; - biscuiteerData = derive2 { name="biscuiteerData"; version="1.8.0"; sha256="19j4g8fvfmfb3x6bpbx5cs3ad8pv263ga8p9rj266s5dla5yi8jz"; depends=[AnnotationHub curl ExperimentHub]; }; - bladderbatch = derive2 { name="bladderbatch"; version="1.32.0"; sha256="1lrx5qx8kj0dzpcqm8091px8zj3snkbjlpwdckyhvf10iyw4mjxy"; depends=[Biobase]; }; - blimaTestingData = derive2 { name="blimaTestingData"; version="1.14.0"; sha256="1dx475m12nb010c56h7iadb6g2b1xgvd6q0mqjkp3sqsfgv27cfn"; depends=[]; }; - bodymapRat = derive2 { name="bodymapRat"; version="1.10.0"; sha256="1zn08w81pyyd19hrgylzpif7rw7n7qny1bccl566sqc80dqhavgb"; depends=[ExperimentHub SummarizedExperiment]; }; - brainImageRdata = derive2 { name="brainImageRdata"; version="1.12.0"; sha256="072x7yn1ambf6hfpir6qdxl8bybv64blpbi1jdp0bvqlk66zs7zv"; depends=[ExperimentHub]; }; - breakpointRdata = derive2 { name="breakpointRdata"; version="1.12.0"; sha256="1iqi64hqj15llx97jlcj3c9ck56pjnndf3yl94pydrwx3p04573a"; depends=[]; }; - breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.32.0"; sha256="0zd05zj1d932llj3a08drv4gqg9s3d06c9jks0pag883sfsq91jb"; depends=[]; }; - breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.32.0"; sha256="0xp2s5rhm443lgwj13nwdq2mp88nkr0lizm3k640fm9h8x3xg5pz"; depends=[]; }; - breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.32.0"; sha256="028ldqaxcw1lgyw1c5jd01jflcfc2bdb2ibvh1yvqnd16v8gpk2h"; depends=[]; }; - breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.32.0"; sha256="04bj9mhhx9pcv5khb6n3zym11iga2vbz24yvk5k3bkqad7rsmi3b"; depends=[]; }; - breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.32.0"; sha256="0x5nj8mbg8nhpbys20ciqsi6hqd46la4zswwvqxpcivd3ksgkbq7"; depends=[]; }; - breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.32.0"; sha256="04wwicmwp8n5lsb0inq97kvg9dv2yw83mb1ampw4vhgrb4adziv8"; depends=[]; }; - brgedata = derive2 { name="brgedata"; version="1.16.0"; sha256="0q9f3bgfnrw6pbwdpx8ya4p6wy3yn3r6p6vbamvfrj5xprnqp06s"; depends=[Biobase SummarizedExperiment]; }; - bronchialIL13 = derive2 { name="bronchialIL13"; version="1.32.0"; sha256="0fdpx3h699jwr81mddjxn0nlv726y6mbjyn6rglq8g9z07z85agk"; depends=[affy]; }; - bsseqData = derive2 { name="bsseqData"; version="0.32.0"; sha256="0yvb8978nxx87x3pc8rhsxvaii08mkfd01x98mx20p8na7r79ckr"; depends=[bsseq]; }; - cMap2data = derive2 { name="cMap2data"; version="1.30.0"; sha256="15va9h1q97xaqxsfd63m011fclfw6g5sq4va8x3k8w57ljvxpfzm"; depends=[]; }; - cancerdata = derive2 { name="cancerdata"; version="1.32.0"; sha256="0bp4gpqcc1w7rhifmq7540k3pds3l9g1qzd3kdklp23f2y5wn9dd"; depends=[Biobase]; }; - ccTutorial = derive2 { name="ccTutorial"; version="1.32.0"; sha256="1rs2pwipw1nblgybkzrhjsgb69ffzn6b6vnv8pq3svasy1dwn32f"; depends=[affy Biobase Ringo topGO]; }; - ccdata = derive2 { name="ccdata"; version="1.20.0"; sha256="0s6n8dv91p3g44j7nhsfjyqzbga4akfsr574abdwmkwyz13b37qd"; depends=[]; }; - celarefData = derive2 { name="celarefData"; version="1.12.0"; sha256="0vhkhb2i1n62shg608q8k6frraynmxghz1kp961v7fca4lww1i96"; depends=[]; }; - celldex = derive2 { name="celldex"; version="1.4.0"; sha256="04w60fx3s3wlirmr65nsz6d7ig48j9fzimdr8kbdqv1g80ivdcq1"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; }; - chipenrich_data = derive2 { name="chipenrich.data"; version="2.18.0"; sha256="1x400szark90jzfnr1fp7z956vp0bbnhgc5njzmigqw213fb0647"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; - chipseqDBData = derive2 { name="chipseqDBData"; version="1.10.0"; sha256="1lv02yn8v3l4h0775dqsbbadv6iv7ln7i58x042avlww2rf3lkp5"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; }; - chromstaRData = derive2 { name="chromstaRData"; version="1.20.0"; sha256="0bpbnsfs44pdwjsgf3vmkgsq0mz46rx13j1d6g69z4yv00m5kp7j"; depends=[]; }; - clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.4.0"; sha256="1wm0mlzs3k88zqjhz9wg846ngffgvs72s2ixmp3kwpdm4gk1jx3y"; depends=[ExperimentHub]; }; - cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.30.0"; sha256="1k6qicydhd81wasvw27gp2p25pcrbfpp6g3aiyvdplaijch5a9nm"; depends=[cnvGSA]; }; - colonCA = derive2 { name="colonCA"; version="1.36.0"; sha256="052gp2a1gfg1rv6zv3n1qw57ky6l6ilyfim6jlj0g08x1rh8mbhq"; depends=[Biobase]; }; - curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.6.0"; sha256="0myaa4n9zslv737q2zk0hhr3cfi18zkvh3xrg29xvq40l7jwd95s"; depends=[]; }; - curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.10.0"; sha256="1mwjw585vn8malbanidvk30gwd5057358ak3669akikxf6wna9cj"; depends=[ExperimentHub SummarizedExperiment]; }; - curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.10.0"; sha256="0k3hhcfs484hxm0jixgs4q29jq9vk90s2zdz2m23inmn8cxv6d5b"; depends=[SummarizedExperiment]; }; - curatedBladderData = derive2 { name="curatedBladderData"; version="1.30.0"; sha256="0jv7aflam2gfzj8snf7dly26zq9c6gj764zb6fk0z9lb8wk4arxg"; depends=[affy]; }; - curatedBreastData = derive2 { name="curatedBreastData"; version="2.22.0"; sha256="0jnjhlw3b27521jmbbq4m0lq388m1g09lfhqfri3hbvrayk19pn6"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; - curatedCRCData = derive2 { name="curatedCRCData"; version="2.26.0"; sha256="0gpkfff5k4mh96d6q5s2iwba7pfkp5wjl3nxhg3sm0vryrj0w8s0"; depends=[BiocGenerics nlme]; }; - curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.2.3"; sha256="1lwca6kpl6lgj56kcyaxnaby34ar1nf4rmcyqgnki1s9z0hsh9z8"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; }; - curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.32.0"; sha256="171m6j6wq5w7n68xzjf34shqhw1360cmzfh5q2al71jsh8lrw77x"; depends=[affy BiocGenerics]; }; - curatedTBData = derive2 { name="curatedTBData"; version="1.0.0"; sha256="0cbs8pkr4zlpvdmq1zsxyh47lkbgpf0ppbv8y653arryb4knficl"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; }; - curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.16.0"; sha256="0d7id11liv55xj0n8gk0587p6kjwm5k22jgwf1f107y81zigpi3n"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; }; - davidTiling = derive2 { name="davidTiling"; version="1.34.0"; sha256="1az64q1vcgp2rwlpv79bhz3xjjki07n5x6jc12i5ladxlxb1zrwy"; depends=[Biobase GO_db tilingArray]; }; - depmap = derive2 { name="depmap"; version="1.8.0"; sha256="17zwkbndf1fa8sb5lc500l4s7f8x0zq6si8yb8i28bpk5hvdz737"; depends=[AnnotationHub dplyr ExperimentHub]; }; - derfinderData = derive2 { name="derfinderData"; version="2.12.0"; sha256="1i8k7yjkkqv7j2qxh46377acgw2zlf7az4fh0v4gl80c1iplzq2j"; depends=[]; }; - diffloopdata = derive2 { name="diffloopdata"; version="1.22.0"; sha256="1nhyjbbdspw11kms4hh4bmwa9m91zl1lwxjp20q6nqdb7vr57ra5"; depends=[]; }; - diggitdata = derive2 { name="diggitdata"; version="1.26.0"; sha256="04q8n0fap7hasfxnhc0gc4118jsch01j2j614j6dx19frc1g96v4"; depends=[Biobase viper]; }; - dorothea = derive2 { name="dorothea"; version="1.6.0"; sha256="1a5nyxbjrd61mbbrpms8whh4v3qjch21xqf98ahaj5ikpsr1fs7i"; depends=[bcellViper dplyr magrittr viper]; }; - dressCheck = derive2 { name="dressCheck"; version="0.32.0"; sha256="12s2cd770n229wxa3gnpyxw299xk8s774wfi9mx0h4r65cvj900d"; depends=[Biobase]; }; - dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.34.0"; sha256="0cp1l68y79qppnzzs11n57f0hasbyla5prc9nr52iqng4fb0y8ww"; depends=[GEOquery marray]; }; - easierData = derive2 { name="easierData"; version="1.0.0"; sha256="05hcnfh3nhkg14fpgzk254472xhxahni4kfmf7xj4pa13yzkvjnl"; depends=[AnnotationHub ExperimentHub SummarizedExperiment]; }; - ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.34.0"; sha256="17l82v618s2mar3j6xrp7y8glh1j2akw26m0jgagnx5ixl4mf7pl"; depends=[affy ecolicdf]; }; - emtdata = derive2 { name="emtdata"; version="1.2.0"; sha256="0s5ki8pywcz72gj1gxc3y060sajl748yc4cxqspa1lbln73w3a5z"; depends=[edgeR ExperimentHub SummarizedExperiment]; }; - estrogen = derive2 { name="estrogen"; version="1.40.0"; sha256="0r6s17wbpy1s5pzvh1z40k6kmy6fcf8c42lvhsrhjzh1vi0ngk2v"; depends=[]; }; - etec16s = derive2 { name="etec16s"; version="1.22.0"; sha256="14m5nhni0jmbpvhnqgip1ck4av3vh5fr88213mlfa2x4bnvghpyy"; depends=[Biobase metagenomeSeq]; }; - ewceData = derive2 { name="ewceData"; version="1.2.0"; sha256="1hjmgnadwh5ikp92c390nwplvhgj08zam65lakznsjmkzigfx18a"; depends=[ExperimentHub]; }; - faahKO = derive2 { name="faahKO"; version="1.34.0"; sha256="0mj2igvbydfj0zgqyf1vvj3p7xd79h3rq4cczq1hllv9nrlkw8ag"; depends=[xcms]; }; - fabiaData = derive2 { name="fabiaData"; version="1.32.0"; sha256="09hsf5kf4fniy4a4kir8k9f8kvvs28d9vzaspjdbgiyh7hqfdw52"; depends=[Biobase]; }; - ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.32.0"; sha256="1wm1wpx292n3zn5zfq0w6i0g4yy88ixww9xbh9j7adnga7xrija4"; depends=[lumi]; }; - fibroEset = derive2 { name="fibroEset"; version="1.36.0"; sha256="14rdlin8g7lby616q3idxg05gxlrgad3r4d9gf4hy8384c0hh8np"; depends=[Biobase]; }; - fission = derive2 { name="fission"; version="1.14.0"; sha256="19zhcr4an9ddpjjzd93jwdkkvcd0s4qdikchyfd8rmybf98sbp3g"; depends=[SummarizedExperiment]; }; - flowPloidyData = derive2 { name="flowPloidyData"; version="1.20.0"; sha256="0jqmaazhn23cqbfz5f55aj1acr3z1vw2a6bhfk85n6npcqvbj1s9"; depends=[]; }; - flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.6.0"; sha256="0jawkzfrq489mrf535biqrlp1xmg1aawbx71n05kxh06i5nyw3zq"; depends=[]; }; - frmaExampleData = derive2 { name="frmaExampleData"; version="1.30.0"; sha256="1dyh4qbw5l99052c7xhrjpn8xzzzqx870gxw1f3xnz7kmvymsqgb"; depends=[]; }; - furrowSeg = derive2 { name="furrowSeg"; version="1.22.0"; sha256="05nn6jlj3z30qz06rdrac1v558176kpgxhaqijmg3amwzinkjlg7"; depends=[abind dplyr EBImage locfit tiff]; }; - gageData = derive2 { name="gageData"; version="2.32.0"; sha256="18kj4c5p9gw0kvx9r71hfb2hn1xyxjny0j3z5shcy762xs17jxb7"; depends=[]; }; - gaschYHS = derive2 { name="gaschYHS"; version="1.32.0"; sha256="0x1vn8mk04j5aslhaxnfa17iqhz68m4yxjs9a5vmbry10lzz1r97"; depends=[Biobase]; }; - gatingMLData = derive2 { name="gatingMLData"; version="2.34.0"; sha256="1qmmaqqa61gmw98ph3mz7pmhbah775bndy436i1vnbyv54r2qi8k"; depends=[]; }; - gcspikelite = derive2 { name="gcspikelite"; version="1.32.0"; sha256="1rb03hm57m7498s0k2lr17zd1a3g19wrjszrwll6yfh9qv9m6gmn"; depends=[]; }; - geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.30.0"; sha256="1a11w94n3415k3pbkb0id6j3hdz2mdkcwh30bywkrm64jlmj8f1l"; depends=[GenomicFeatures rtracklayer]; }; - genomationData = derive2 { name="genomationData"; version="1.26.0"; sha256="1h2q5ai72z1yrjkl2108qs9rn8k9kmidmyx22bq4wkpjvblz8ajb"; depends=[]; }; - golubEsets = derive2 { name="golubEsets"; version="1.36.0"; sha256="1np5z91y6b9d1jcsnc4qfa6gvq7lg4ih0l06lis989ya1j4733ka"; depends=[Biobase]; }; - gpaExample = derive2 { name="gpaExample"; version="1.6.0"; sha256="1s019xpdc0c27x66c6b2m22mzx33cr325w3x3vpw60cgnnkp49rr"; depends=[]; }; - grndata = derive2 { name="grndata"; version="1.26.0"; sha256="0i58gfmgc539m8l8d8kkh09jq1daddwxjpw0hwl5x0l3idkpr91v"; depends=[]; }; - h5vcData = derive2 { name="h5vcData"; version="2.14.0"; sha256="0pqwqbfp9wfynfkk41y1lpv29a46wdwnd7asa8bnfix1lxlvs4bf"; depends=[]; }; - hapmap100khind = derive2 { name="hapmap100khind"; version="1.36.0"; sha256="1d8fi14bsklbh9rd7z5wp8ni183l2as6hljbsc1gwz8bk7117v7a"; depends=[]; }; - hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.36.0"; sha256="1agaxkfihjpn0kvjgq9xyr3bw4y9fwfpgn4whis50hlr1mjqliv6"; depends=[]; }; - hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.36.0"; sha256="1dkigl3gx1yhm3lfjhpck6cll83i0glkf9ayqlpfslhgzv72avk5"; depends=[]; }; - hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.36.0"; sha256="1c403sh5wpn4xs6zi8a6ydy8jddlpa0a5z0zwd7bcmipl4aq0x99"; depends=[]; }; - hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.36.0"; sha256="1fxi79nyy07sh8lmvzhr5gd923d4gm137p71988fkfs6s43dm2wn"; depends=[]; }; - hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.36.0"; sha256="1s66nw97sw46jlkhlxa8a4847kgxd2bwrjjx3pah52afpz98capg"; depends=[]; }; - harbChIP = derive2 { name="harbChIP"; version="1.32.0"; sha256="1dnq3mwa3w4a6333ff6gdyb2aq4hgigzb8zmvid9m3sh5js3pl6k"; depends=[Biobase Biostrings IRanges]; }; - healthyFlowData = derive2 { name="healthyFlowData"; version="1.32.0"; sha256="0lp8j6m3s9lm237dqmmpcamgffgvawclrq3r7n0ln0qy3z9k65jy"; depends=[flowCore]; }; - hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.32.0"; sha256="0m21wv5z7y9crcvq3hh0fj5r48bb6f5vijpibj4wmj55mjlbdd0s"; depends=[]; }; - hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.14.0"; sha256="015k7l7da223vzplfn2ih3k6pxw1pyv1zcprmvs8ziaxkrh07v94"; depends=[Biobase]; }; - hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.32.0"; sha256="1ivqgc2sm98wykkixqz13jjv739rza49jkn6nx8d907ig9cxsa97"; depends=[]; }; - hgu2beta7 = derive2 { name="hgu2beta7"; version="1.34.0"; sha256="06p37yiirpf36bgnhv7amfw470aa0f2nrw2jybx3iksy1i3175q4"; depends=[]; }; - humanStemCell = derive2 { name="humanStemCell"; version="0.34.0"; sha256="0lvy1n389wsc85yi7kmwq2qda0nl3hpl5bqak01fr3d6040v7g27"; depends=[Biobase hgu133plus2_db]; }; - imcdatasets = derive2 { name="imcdatasets"; version="1.2.0"; sha256="1qgg2cnalx9kiv73g0n9axc6y5b25kwxbmn7cg9syvlrfn0iynlz"; depends=[cytomapper DelayedArray ExperimentHub HDF5Array S4Vectors SingleCellExperiment]; }; - kidpack = derive2 { name="kidpack"; version="1.36.0"; sha256="094b1jhyal4h3k4ilmayz77mbjqkmn7b5bsw799jmsqyg93f4r7g"; depends=[Biobase]; }; - leeBamViews = derive2 { name="leeBamViews"; version="1.30.1"; sha256="1pa1i7mb7ixs7zrj9h93s4kgbc1dq3nx40knsm5i7a43jxsl6ggw"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; - leukemiasEset = derive2 { name="leukemiasEset"; version="1.30.0"; sha256="0hnqi0qm7caipjkp3asabby5jrjl57vvshnwiwqnjsf87xx19cjx"; depends=[Biobase]; }; - lumiBarnes = derive2 { name="lumiBarnes"; version="1.34.0"; sha256="103iz7vjhh1w8zyb4n3kf1w9qfa7li9p2jql48cjsadvil4bfl09"; depends=[Biobase lumi]; }; - lungExpression = derive2 { name="lungExpression"; version="0.32.1"; sha256="00dm271n1lnj5myscmkm9g4a361lfsfg8cl7ii5z8br9v4wyw2y8"; depends=[Biobase]; }; - lydata = derive2 { name="lydata"; version="1.20.0"; sha256="0sl5a35fgac7lzi5y52fif7s5chi4jskg21a46gcyi8xv6k8lj4f"; depends=[]; }; - mAPKLData = derive2 { name="mAPKLData"; version="1.26.0"; sha256="01dfn8jd5rq14fk7s14i4z6rn59c82qzdy12lhn2srzxdz0jhwf2"; depends=[]; }; - mCSEAdata = derive2 { name="mCSEAdata"; version="1.14.0"; sha256="0sa3c0b3i3qf9ng7475lszl6lxl33hb6m3fcxlval06qifsdbc39"; depends=[]; }; - macrophage = derive2 { name="macrophage"; version="1.10.0"; sha256="1kxnrz40b0magbl9dlpx2p216hnf91lkax0pzxsg9ci4xn3xz844"; depends=[]; }; - mammaPrintData = derive2 { name="mammaPrintData"; version="1.30.0"; sha256="00f2kl84xa1f84p03nqa139p753ln1fdxc4nih3f4nnzbjxl5chb"; depends=[]; }; - maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.38.0"; sha256="0xx3sqapk29f5wyr7zslhyay22ly53q2ysdgvl2k888j9glblh9l"; depends=[]; }; - mcsurvdata = derive2 { name="mcsurvdata"; version="1.12.0"; sha256="0cf3symwf91gfrb5rv0vyfmin3l27jc0gws558y3g75h13la2zxm"; depends=[AnnotationHub Biobase ExperimentHub]; }; - metaMSdata = derive2 { name="metaMSdata"; version="1.30.0"; sha256="1cshvd3s5d1zxipw4yyfi45lsi6abx12j3n39qi2wp405yx53bnp"; depends=[]; }; - methylclockData = derive2 { name="methylclockData"; version="1.2.0"; sha256="1qfwjw2z40v3dk6ygchwnp61fzxa4wyjd7aq8l4i5krylxzwj1ic"; depends=[ExperimentHub ExperimentHubData]; }; - miRNATarget = derive2 { name="miRNATarget"; version="1.32.0"; sha256="067bcdyhqrrym2sz854dw2qpmabfp1yf2iryhpkbfk9b8966b9yv"; depends=[Biobase]; }; - miRcompData = derive2 { name="miRcompData"; version="1.24.0"; sha256="1gb8zx82dlfqhdl8yy1p0l756qs2lldnlm05xk6r4k46wz937jw9"; depends=[]; }; - microRNAome = derive2 { name="microRNAome"; version="1.16.0"; sha256="1y6g5i8x2ylxrr6k80kg92a04isfr7c3w7zi01chf1fpsdxjimjn"; depends=[SummarizedExperiment]; }; - microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.2.0"; sha256="0pi15jk2k2nzcylh45mklz7id556ljqhx1fdcc04hrgw7n96c1ks"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; }; - minfiData = derive2 { name="minfiData"; version="0.40.0"; sha256="12lnn43l6mdk4rbcihd68hsz0rqgi005zwih5wqx1jp400g2kd07"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; - minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.20.0"; sha256="0jc1mqw2ah95ai10xl8m62gs38c88qzrsx4lkcg1w03dqxky08qj"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; - minionSummaryData = derive2 { name="minionSummaryData"; version="1.24.0"; sha256="1ldwmxhs7sg6k30prsa88hkxwmb3sf8ik2zv83j020cqxjlwr6xv"; depends=[]; }; - mosaicsExample = derive2 { name="mosaicsExample"; version="1.32.0"; sha256="0jnak8dsdkyxbr5bzd1d17lyksmvk6jl6p0hh4gdkxfv476by05y"; depends=[]; }; - mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.32.0"; sha256="1sppdbcdd20nd19887x4bfsciqmh6gffv6ikaqq21k7lkraidb4c"; depends=[]; }; - msPurityData = derive2 { name="msPurityData"; version="1.22.0"; sha256="1v1hdgzz9v7sy0hjpimy3jaj42zhb2lxr3612qb07n0a4rl7k700"; depends=[]; }; - msd16s = derive2 { name="msd16s"; version="1.14.0"; sha256="02mn8pjxqfy9rjc6rdac3in2iqmy7x6lkb8cag3zhmx6z98b8lxv"; depends=[Biobase metagenomeSeq]; }; - msdata = derive2 { name="msdata"; version="0.34.0"; sha256="066ss2cvqmisxw1sslz04a0izq2vmpgvlg00v8wynv7pmq1783w2"; depends=[]; }; - msigdb = derive2 { name="msigdb"; version="1.2.0"; sha256="1i9c4h52z64kma1ms7qcvp3w6xrn2cmcrm389837znscghcm60mx"; depends=[AnnotationDbi AnnotationHub ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; }; - msqc1 = derive2 { name="msqc1"; version="1.22.0"; sha256="0r0aj6x67ys5bxxfwc8cybkqnfl226ypgz5zhs6d701y8py7c3mv"; depends=[lattice]; }; - mtbls2 = derive2 { name="mtbls2"; version="1.24.0"; sha256="1kbpnxizzz42inj6g1s4xgq2wmk53zkvpvgdkwvljxzavr8znjl6"; depends=[]; }; - muscData = derive2 { name="muscData"; version="1.8.0"; sha256="1m263nykpxzl6xqvx8s7iadmfn4ammfvh2h0cdrk01vw4m4llywd"; depends=[ExperimentHub SingleCellExperiment]; }; - mvoutData = derive2 { name="mvoutData"; version="1.30.0"; sha256="059y5iqbgav4b0sxdqjq6a0nx4c9wnxny1amz5bda4s3ragvn7vh"; depends=[affy Biobase lumi]; }; - nanotubes = derive2 { name="nanotubes"; version="1.10.0"; sha256="0rfq4z3cyx3skgrnrv94x5vxxijjrycim79q42anyk8f6p52yfsw"; depends=[]; }; - nullrangesData = derive2 { name="nullrangesData"; version="1.0.0"; sha256="0qcmmrwkdxlf33dlwdj1wi0b7s1kq6fw87ssc6c20wlzq5izxhnl"; depends=[ExperimentHub GenomicRanges InteractionSet]; }; - oct4 = derive2 { name="oct4"; version="1.10.0"; sha256="1ayjjx9rnsg8s6gnsbcymg5rl2c9hv16q0gfgwrfz56vz4j1lwpz"; depends=[]; }; - optimalFlowData = derive2 { name="optimalFlowData"; version="1.6.0"; sha256="1g11hanznd30f9payhb91z8zv9w2l0qicxmrq0ykgxmsmbw6hg44"; depends=[]; }; - pRolocdata = derive2 { name="pRolocdata"; version="1.32.0"; sha256="1wj50c0xaa8nqxzvvhkvfnh6bncq54crjrczad1xxsizik1vz0yn"; depends=[Biobase MSnbase]; }; - parathyroidSE = derive2 { name="parathyroidSE"; version="1.32.0"; sha256="03jv5jsh6yn53kf9qvlgkqrwh5647p5jnwaz4lqn5lc14q9b2qd9"; depends=[SummarizedExperiment]; }; - pasilla = derive2 { name="pasilla"; version="1.22.0"; sha256="0jgphpwm5z1rzhcqbpzrhyfynjg5p8lb46m2l9ffmxbwi899i0qh"; depends=[]; }; - pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.32.0"; sha256="1zxbcf83hsfzkps5ms46nj3g5ym532zncwlfna95kmw12xc9a90w"; depends=[]; }; - pcxnData = derive2 { name="pcxnData"; version="2.16.0"; sha256="05nnpjnci3q2g1rmmmv8vjyzjylx4pzi42p71b95ff2apifbhk95"; depends=[]; }; - pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.32.0"; sha256="0bg7r5101xayyqbb1m4xcnq5iz63h3jl7v8v2s2ma07yaxix9w7x"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - pepDat = derive2 { name="pepDat"; version="1.14.0"; sha256="1l6cp2w22pywvdkzra8ifwxf4s5v47hpf5ljp97k34wpsrh7cws4"; depends=[GenomicRanges]; }; - plasFIA = derive2 { name="plasFIA"; version="1.22.0"; sha256="118fch06a609gp799dsym3k14zspxdxzd9ck5jjpf8b3pf17ly9y"; depends=[proFIA]; }; - plotgardenerData = derive2 { name="plotgardenerData"; version="1.0.0"; sha256="0fad3v1gh0g595zk1vabns8jfhb9h1qnlqynrjq50hrgg1vdljgw"; depends=[]; }; - ppiData = derive2 { name="ppiData"; version="0.32.0"; sha256="0dkg5n492rmzpmbpd59gh6ab8y2j1hvwcy1na919napjccwmq88b"; depends=[AnnotationDbi graph]; }; - prebsdata = derive2 { name="prebsdata"; version="1.30.0"; sha256="0qqlizp029zgh5gsy9spc7a5l6wd80d2q15p1y8hk6ghgnnj13ka"; depends=[]; }; - preciseTADhub = derive2 { name="preciseTADhub"; version="1.2.0"; sha256="1ya8g899scnjfdidzdqkdgvn2xgsn98cgv7lnbcvnw7cg1ilzxh1"; depends=[ExperimentHub]; }; - prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.22.0"; sha256="0bkw08cq559z5mban238nwi917zkdysk3gjv9rqafq02ksgzn261"; depends=[Biobase]; }; - prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.22.0"; sha256="0a13q40bw3f1s9vv3xikbqzs71nns9hvfkf3acqjw0ydq0ca0ns1"; depends=[Biobase]; }; - prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.22.0"; sha256="0jr248zkbsqp8sidnf3yl8f53aqrp5di574ymgmqxmqdxc72pd67"; depends=[Biobase]; }; - prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.22.0"; sha256="0s1jk2wj514rn43l13rw8k3y3phsiif3dw5pn84cqs47zwkb7q7q"; depends=[Biobase]; }; - prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.22.0"; sha256="1jj3qa795q75s46brq67hr8vkpzdxgc05wi3i564y4k8d08gl0xl"; depends=[Biobase]; }; - ptairData = derive2 { name="ptairData"; version="1.2.0"; sha256="13dqn720svg74q7fn6wvplcsdjpjlr8dj83ncqlsvddmyscyyclk"; depends=[rhdf5 signal]; }; - pumadata = derive2 { name="pumadata"; version="2.30.0"; sha256="184xrjjm4smgrfj18w63qq1p7f0dmn2qvf3y3mym1s6r2z00r73s"; depends=[Biobase oligo puma]; }; - pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.8.0"; sha256="15zkxp1wpnxi0g15x9ym1syfg3q5scvmpxq3zj5cs37z60y9gb7d"; depends=[ExperimentHub]; }; - qPLEXdata = derive2 { name="qPLEXdata"; version="1.12.0"; sha256="0dw6dicy7srlx5nxla76k338ki4aan54h3rnrqmyd7h3pp5svx09"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; - rRDPData = derive2 { name="rRDPData"; version="1.14.0"; sha256="096wasx4xap4jvcziqr175qq84kz0yzy6v2ji618r6cflnlfrd8p"; depends=[rRDP]; }; - rcellminerData = derive2 { name="rcellminerData"; version="2.16.0"; sha256="1yany4zkk72kxrqzy27azxfnl6mkrf02yby1gizixn04mqzbjl1a"; depends=[Biobase]; }; - restfulSEData = derive2 { name="restfulSEData"; version="1.16.0"; sha256="1bx41xwxnvx6712wsy5qljji2w3wiybvddkxic8xc9l2hrcmfhrz"; depends=[ExperimentHub SummarizedExperiment]; }; - rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.32.0"; sha256="0k2klx4rpyzcq346c3ak2lf6w47zkhnhiqn4rs70xnxnsbjn2ca5"; depends=[]; }; - sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.18.0"; sha256="12k7xhd2axmcpmv970xbhx5r9b0jdmkxxqm01a0v2jfx3imzz9jb"; depends=[SummarizedExperiment]; }; - scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.0.1"; sha256="0iz0i58afr58y4mc6iyajzdblpd1s2mng693nhb49rka4bf1fx0j"; depends=[BiocFileCache data_table Matrix S4Vectors SingleCellExperiment]; }; - scRNAseq = derive2 { name="scRNAseq"; version="2.8.0"; sha256="19caas79yarf3vww60bnn92v9ns82pawqbbw78kmy0x94hvsfdbk"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scTHI_data = derive2 { name="scTHI.data"; version="1.6.0"; sha256="0n794kicpylibqgi4z9mwdgmk5ni3yhqzaqcdr2mij844s079fx4"; depends=[]; }; - scanMiRData = derive2 { name="scanMiRData"; version="1.0.0"; sha256="0z6nl4w4r8m1mara0zyzlg7xx6y9fa8psvln0695wvpxzmps4y9h"; depends=[scanMiR]; }; - scpdata = derive2 { name="scpdata"; version="1.2.0"; sha256="11nqfjk5cy77c720f035qc7l5kryf8fkc0rg6l6j646rcrk1dbmz"; depends=[AnnotationHub ExperimentHub QFeatures S4Vectors SingleCellExperiment]; }; - seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.26.0"; sha256="0axgbixlr3zrjlhxrsbcv4fxl42bnd23gwfpngj62pi12mk4v54j"; depends=[]; }; - seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.30.0"; sha256="04m6azyswyglh2lvikk6xhnn2449p6vj2zhny1lpcg7j4x8msdvm"; depends=[]; }; - seqc = derive2 { name="seqc"; version="1.28.0"; sha256="1iz35c3k8cr1080yi6cmjr42hwigfwjz5ydn36n6yy41n1s988za"; depends=[Biobase]; }; - serumStimulation = derive2 { name="serumStimulation"; version="1.30.0"; sha256="1zn0q5zxdzfkkgv8n3q5nyxsj6yrv3chhyivggzxrjk942anl4rg"; depends=[]; }; - sesameData = derive2 { name="sesameData"; version="1.12.0"; sha256="1kr5vn4rw1ncnvbxx3j2amqqzsddzwy79qlpzqxp8jmzydqfamxj"; depends=[AnnotationHub curl ExperimentHub rmarkdown]; }; - seventyGeneData = derive2 { name="seventyGeneData"; version="1.30.0"; sha256="0ckip0hw3xwf48iqschdwrlx4yr5wnyf7iycxfbrc2cz7zsbgp5n"; depends=[]; }; - shinyMethylData = derive2 { name="shinyMethylData"; version="1.14.0"; sha256="0hb1ahn1c613iz6ds39jgpa6aw0wgl0pv5f9gai1fp1zbqc44r6p"; depends=[]; }; - signatureSearchData = derive2 { name="signatureSearchData"; version="1.8.4"; sha256="0k5j35jsdfk3qza3kzp2ih9irz4d4xbwr64wd4ibmzydkjrjdrcz"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5]; }; - simpIntLists = derive2 { name="simpIntLists"; version="1.30.0"; sha256="0q2lqfhsjncdj42hblrh389j2m47x26nn58s31s1448pddhrp7z1"; depends=[]; }; - spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.0.0"; sha256="1h5crcjrzapj5j31285ana48g3b2iscxwlzxxdx9i03jsl39dlp8"; depends=[ExperimentHub SummarizedExperiment]; }; - spatialLIBD = derive2 { name="spatialLIBD"; version="1.6.5"; sha256="1m25wk2np5yj0wygw3gg3kq8ykzx14jqj73aqs0yhsr04pp7qm8x"; depends=[AnnotationHub benchmarkme BiocFileCache BiocGenerics cowplot DT ExperimentHub fields GenomicRanges ggplot2 golem IRanges jsonlite magick Matrix plotly png Polychrome RColorBrewer rtracklayer S4Vectors scater sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment SummarizedExperiment tibble viridisLite]; }; - spqnData = derive2 { name="spqnData"; version="1.6.0"; sha256="0dwmgwz88g8fzpa2nl2zs4y32wrlf4ca142d8siak14wl089nm4y"; depends=[SummarizedExperiment]; }; - stemHypoxia = derive2 { name="stemHypoxia"; version="1.30.0"; sha256="05jly60gg5xr9511jlymzbpjysapfz2qq81rxhdz7cjbjkkgvykr"; depends=[]; }; - stjudem = derive2 { name="stjudem"; version="1.34.0"; sha256="005wy7b8naaph9krsdw234sk8fprccclnj7y4rfrs2f3lbrw4b2g"; depends=[]; }; - synapterdata = derive2 { name="synapterdata"; version="1.31.0"; sha256="03bdx8a1hrnlbcfq92d2yrjydw978pifbgr257r55p15khkigl86"; depends=[]; }; - systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.22.2"; sha256="1hkmgj6dzrn2wnpasl418hxzv9ym0007swg9ayjjy6i4w0q1mvs3"; depends=[BiocGenerics GenomicFeatures GenomicRanges IRanges jsonlite remotes Rsamtools rtracklayer ShortRead]; }; - tartare = derive2 { name="tartare"; version="1.8.0"; sha256="0zaiy4wkikrcx2lc8mcsikpfp8yz3l17bd1z1l0g9r41ixysq105"; depends=[AnnotationHub ExperimentHub]; }; - tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.12.0"; sha256="1kmh4iyh2h7vc1mlwb3sridn4nwkqdschz5md5dk53mxkn2wxcmi"; depends=[bsseq ExperimentHub knitr]; }; - timecoursedata = derive2 { name="timecoursedata"; version="1.4.0"; sha256="007dh5wmjd6s7jr0p8af6irm25my20j1ifxhm6rxscgijskqb410"; depends=[SummarizedExperiment]; }; - tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.32.0"; sha256="1pa1mzb03p8wfrihcpvqhp2zpzhf0hg5amwmivr4926x26ivkbsj"; depends=[]; }; - tinesath1probe = derive2 { name="tinesath1probe"; version="1.32.0"; sha256="00bhw370f4i866w08fia3acp7whxz7p167y444jaavll29bhqgsy"; depends=[AnnotationDbi]; }; - tissueTreg = derive2 { name="tissueTreg"; version="1.14.0"; sha256="0ldgq526izrvazrsbwhnvq6yqc2zr6d9mvq87jvsmwskxswyrpva"; depends=[]; }; - tofsimsData = derive2 { name="tofsimsData"; version="1.22.0"; sha256="1iqp70zr2i3p0pvzblsqqy7v949n5ankxp133zyhm88wscqxjwiv"; depends=[]; }; - topdownrdata = derive2 { name="topdownrdata"; version="1.16.0"; sha256="1s4yskh6jy49dipbb7ixrb4dbl5d8a33d1kb5j99vgimj8rq9gsy"; depends=[topdownr]; }; - tuberculosis = derive2 { name="tuberculosis"; version="1.0.0"; sha256="1bnimnik486r6g6mx0frigg5iwm3x4zbwsrsfq59s05mzix7silm"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; - tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.32.0"; sha256="1zi2ic6yhwh3swp473xy540wg74g98bs4s820yzga9aqbcp7g5h2"; depends=[Biobase]; }; - tximportData = derive2 { name="tximportData"; version="1.22.0"; sha256="0fyy487874h2aqb5lvjndn8fgs708m3lv4am42xcjpky98b3zl71"; depends=[]; }; - vulcandata = derive2 { name="vulcandata"; version="1.16.0"; sha256="0apb9s4hm3a2hqwa81l58havrdwx2b8wl52xcb62b398f9mblhgb"; depends=[]; }; - yeastCC = derive2 { name="yeastCC"; version="1.34.0"; sha256="0h2z51ky3lmwbmryp7lk4njsmk4xhgrjgvgfj87gy6y2pns9vf10"; depends=[Biobase]; }; - yeastExpData = derive2 { name="yeastExpData"; version="0.40.0"; sha256="04x7spq9wh3kc5b0qblam312zazghkmvzlkypwqdd5g2vfrkracl"; depends=[graph]; }; - yeastGSData = derive2 { name="yeastGSData"; version="0.32.0"; sha256="0ic024xjg3xpgbrwvgvjfx35ljs3lanfkncnxcp71k81dzn5009l"; depends=[]; }; - yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.30.0"; sha256="0j9bfwwwnp3ik7fr8m8pngv2pjgqg1j6mpa4pm5519kr031zk540"; depends=[]; }; - yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.32.0"; sha256="0hdf1fysyndm0dpyh3r491vgqdrwpqysn0xibdr77rcwlbdshp6x"; depends=[]; }; - zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.14.0"; sha256="150i53k2khdszk35hxxq5wsnzfdvf4kzqrmlb1946rjg6plm61pi"; depends=[]; }; + ALL = derive2 { name="ALL"; version="1.38.0"; sha256="0410045x327wmfkksshd8yishw4yxij08vn8p65cdj7hb3qy3p0z"; depends=[Biobase]; }; + ALLMLL = derive2 { name="ALLMLL"; version="1.36.0"; sha256="01dkfq412p6chbv0z9fqhizmjravrq7lgbl94zfhxx3rr2r94gvg"; depends=[affy]; }; + ARRmData = derive2 { name="ARRmData"; version="1.32.0"; sha256="1cjzr58426s9z2bwjz3wzlkh52fv0q85cw4gbjnhwakh9sr3dd5p"; depends=[]; }; + ASICSdata = derive2 { name="ASICSdata"; version="1.16.0"; sha256="0y2n8g7sxh3sygvslk9z4pcac55c2fa1cplrg3hi1m1w315wrkvv"; depends=[]; }; + Affyhgu133A2Expr = derive2 { name="Affyhgu133A2Expr"; version="1.32.0"; sha256="06dq8930jjhw4hqzqwh5vyqaacg1dm6v4v20ilz82ynsa616mhf7"; depends=[]; }; + Affyhgu133Plus2Expr = derive2 { name="Affyhgu133Plus2Expr"; version="1.30.0"; sha256="1hvjlv3qza7cggfc764blw51aa2vghqbkyr7vhc2zipwvx924ig3"; depends=[]; }; + Affyhgu133aExpr = derive2 { name="Affyhgu133aExpr"; version="1.34.0"; sha256="1mzfzaphd42h6rcwawj521643blwp1qdimmx1k6nxjfzm4igwdvf"; depends=[]; }; + AffymetrixDataTestFiles = derive2 { name="AffymetrixDataTestFiles"; version="0.34.0"; sha256="1sfxmhlhg26ksrl12crvbfn8c3q9h5n93vg3rw5m3q7bxss4ag1j"; depends=[]; }; + Affymoe4302Expr = derive2 { name="Affymoe4302Expr"; version="1.34.0"; sha256="0hw0xrx12aa0a8l2mqshpd364acb98qani4m6mzgp419rl0bdw70"; depends=[]; }; + AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.36.0"; sha256="1k3z11wg44xrpm14lcvhbcgndz79b6i8dqld3n4xg0m5ivc11qrl"; depends=[affy]; }; + AneuFinderData = derive2 { name="AneuFinderData"; version="1.24.0"; sha256="0cncb8km0sc2xh95rgnnm38kys5ml0n8gh8cl6x7ls1xh9sm83f7"; depends=[]; }; + AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.26.0"; sha256="11rxr1wapfyif7wn6x0zjc6c470fmkhbpcjssfrmkisxrlq84xdf"; depends=[]; }; + AssessORFData = derive2 { name="AssessORFData"; version="1.14.0"; sha256="1pgwrcixr0si0977svyavls79fw7dh5fh9i4ywnqb5rziadmjcmq"; depends=[DECIPHER]; }; + BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.34.0"; sha256="0ckgm24nxq1sk54acqj49f7wi54zaipav85yzgjr72slp5rkzvmp"; depends=[beadarray GEOquery limma]; }; + BeadSorted_Saliva_EPIC = derive2 { name="BeadSorted.Saliva.EPIC"; version="1.4.0"; sha256="17r22xnw8kq6v2nlgjibqpl927wz0y1pxqb42grqmz8dvhhxig76"; depends=[ExperimentHub minfi]; }; + BioImageDbs = derive2 { name="BioImageDbs"; version="1.4.0"; sha256="0khlz0vzymschk3bz1i2v4qj08b12qb9p3gbz86fxrcydd10084j"; depends=[animation AnnotationHub EBImage einsum ExperimentHub filesstrings magick magrittr markdown rmarkdown]; }; + BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.16.0"; sha256="1nj30nw545wlr710phay3jd3gd3pssx5pisyap8mall9953zzr4p"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; }; + CCl4 = derive2 { name="CCl4"; version="1.34.0"; sha256="00hdpa4s8n3kx6nqsmja9x7qwwwx6awjv1spa2gfkyrrj3lgzdfg"; depends=[Biobase limma]; }; + CLL = derive2 { name="CLL"; version="1.36.0"; sha256="1g3m90j86518wq4g4bd535pi3i8wylffcwvq1p0kr1jm7hfwshmn"; depends=[affy Biobase]; }; + CLLmethylation = derive2 { name="CLLmethylation"; version="1.16.0"; sha256="1nchppd564cj61lzbjl89m8jdx336f1iszq5giybjhnywvqdz0p1"; depends=[ExperimentHub SummarizedExperiment]; }; + COHCAPanno = derive2 { name="COHCAPanno"; version="1.32.0"; sha256="0r29krcwsfvyp3acx6slfv1909xh04izjdbbxhn032h02ahk2wxr"; depends=[]; }; + CONFESSdata = derive2 { name="CONFESSdata"; version="1.24.0"; sha256="1cd86s4n9k3fmzaxw7cda3x0hxxr4yk15v9wadn6gncqia5qflix"; depends=[]; }; + COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.32.0"; sha256="1kvza4sf3wlylq7x6v5rv8bz46q2bm9dd49xy3a3yw7kjfby1h9x"; depends=[]; }; + COSMIC_67 = derive2 { name="COSMIC.67"; version="1.32.0"; sha256="14gwl2j6sgfwrvzlccfjnvrlwqzjrxh7fdphs89ij57nkc750bkk"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; }; + CRCL18 = derive2 { name="CRCL18"; version="1.16.0"; sha256="1nph7k01d0gvgh62rk5m0p8g6clii6rihlwxa8j57sakpf19a3ap"; depends=[Biobase]; }; + CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.28.0"; sha256="0wcrsbbr5a8sh5hvagdl3jhfxy22p2dslfnzp21pxj65fj33ij2y"; depends=[Cardinal]; }; + CellMapperData = derive2 { name="CellMapperData"; version="1.22.0"; sha256="0nyik0vjm8a3mj6589civly48504a1f2a9nxn2inbfw011plg7hf"; depends=[CellMapper ExperimentHub]; }; + ChAMPdata = derive2 { name="ChAMPdata"; version="2.28.0"; sha256="1fvr7drdfzw4jwp7lilspy2mv751828a5w53y0s1f1i347vplw0s"; depends=[BiocGenerics GenomicRanges]; }; + ChIC_data = derive2 { name="ChIC.data"; version="1.16.0"; sha256="16ac969qqhpca0qlff36g85rw1m25jk5qbs30i561yznn82bk2q0"; depends=[caret genomeIntervals randomForest]; }; + ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.34.0"; sha256="09v30pxs1nqq53294mzc0vajxxymv6168fixz3gsspb3aq3xnfy2"; depends=[bigmemory]; }; + ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.20.0"; sha256="153nbfwwhn888ribapy1xh2lii0mzs9f1hczph9f4iaykyk5i9di"; depends=[]; }; + ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.34.0"; sha256="107glwdm8pjyzvb13x75qa826xbpl4x0c8k33ych54ji1gd3qmyg"; depends=[affy hexbin limma qvalue statmod]; }; + CluMSIDdata = derive2 { name="CluMSIDdata"; version="1.12.0"; sha256="1dkz0xl9nn620mbin88yxk2vs312vpayp95i0ci5qnpifnwv63wk"; depends=[]; }; + ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.32.0"; sha256="1lfp54kics0lkdhwyr78fdpwhyf3ziw9hq2mf648a0dinrd8m9k3"; depends=[]; }; + CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="1.14.0"; sha256="0xvj4z8vh2sv3gl5nkrkmjdvvallixdf0dyqbnpg7q03kfvbnw44"; depends=[ExperimentHub Rdpack]; }; + CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.28.0"; sha256="0klrnxck0q14birnpwzkiwmj77hwdn6gazvdg0lqn9y6j5mbkyx1"; depends=[]; }; + DAPARdata = derive2 { name="DAPARdata"; version="1.26.0"; sha256="0ijq9aadqvlnbgw72y0dkxsyn3giain32kjx7ghfyj104pfh8dxm"; depends=[knitr MSnbase]; }; + DExMAdata = derive2 { name="DExMAdata"; version="1.4.0"; sha256="1bdc40cyfkwk3y5ab8qnql0g2k5cz025fh4n6bisil3372jick53"; depends=[Biobase]; }; + DLBCL = derive2 { name="DLBCL"; version="1.36.0"; sha256="1s9j6ssxhbb5vcik7rdkfkm1y9la1g3ys91xdfyc6hpxmzxckgvk"; depends=[Biobase]; }; + DMRcatedata = derive2 { name="DMRcatedata"; version="2.14.0"; sha256="0abmnnawn06m4dyh6hs5hcdlhwx5l5bmlygzizcy6968d9x5l4w9"; depends=[ExperimentHub GenomicFeatures Gviz IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 plyr readxl rtracklayer]; }; + DREAM4 = derive2 { name="DREAM4"; version="1.31.0"; sha256="11ypc84agvq0q0v7bk0b25cm48awxay5hhhjd95gw9s7jk196i2p"; depends=[SummarizedExperiment]; }; + DeSousa2013 = derive2 { name="DeSousa2013"; version="1.32.0"; sha256="1dx3568szd4i26jpl8i0klqqh0qgi8mgh5i4mmmkxwp44p10igzg"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; }; + DmelSGI = derive2 { name="DmelSGI"; version="1.27.0"; sha256="134jwqnqprvma85slbahhx6jbbmfpxwfgnyk0kvx6xy28kvgkx6b"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; }; + DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.34.0"; sha256="088w2c7xyz6zsymwsm4s5999q6sry0xscrs9n8sv6qzqhpfisa5p"; depends=[EBImage]; }; + DropletTestFiles = derive2 { name="DropletTestFiles"; version="1.6.0"; sha256="0lwcfprv17p9ng5x3arr9j67234y003n5g45aqcc39qiz075y8rv"; depends=[AnnotationHub ExperimentHub S4Vectors]; }; + DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.32.0"; sha256="0l4n4wfd24l0lx07b5x947ngp4wyyw2iajgyam4h9n99k8cjkmnl"; depends=[]; }; + DuoClustering2018 = derive2 { name="DuoClustering2018"; version="1.14.0"; sha256="055hjyd29rjw1zh5vq0r4pqiryrjzay6fpslb7lwkp5g7xyav25w"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; }; + DvDdata = derive2 { name="DvDdata"; version="1.32.0"; sha256="115j17lkcr33phqx6ps90wj7jljzbf6cnah77ambzk1grfniw0hy"; depends=[]; }; + EGSEAdata = derive2 { name="EGSEAdata"; version="1.24.0"; sha256="08jhv4sq8wkwfv9klv6amf8shdm95qg9a5wl1pbxkp3bd326l1hj"; depends=[]; }; + ELMER_data = derive2 { name="ELMER.data"; version="2.20.0"; sha256="0ifnlf0fk901spsqpm8gqy8d3fizb3axff1hf7wa809n5mqzhpvf"; depends=[GenomicRanges]; }; + EatonEtAlChIPseq = derive2 { name="EatonEtAlChIPseq"; version="0.34.0"; sha256="1p7cnp2nx0ar1gimwwsnw7brnlrj7gnpmv687wv16vmab5nnk1bx"; depends=[GenomicRanges rtracklayer ShortRead]; }; + FANTOM3and4CAGE = derive2 { name="FANTOM3and4CAGE"; version="1.32.0"; sha256="0kg8d3npjkvpa915n3m9v8q4im4z47npgwj66xr7jjxy0fjrigg1"; depends=[]; }; + FIs = derive2 { name="FIs"; version="1.24.0"; sha256="1vmzfy33b11ac4zhc8b02ksfhnqc7ypzhb0nrgab4gd0d0mylvs1"; depends=[]; }; + FieldEffectCrc = derive2 { name="FieldEffectCrc"; version="1.6.0"; sha256="0h0rh24cqh8s607wk7aaf4znzhxh88dx839mxp61glqrjhhpkp8y"; depends=[AnnotationHub BiocStyle DESeq2 ExperimentHub RUnit SummarizedExperiment]; }; + Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.32.0"; sha256="11hfy58hnvaarsrgvqrz51y25sdach67qksfc51id45nqr5za345"; depends=[Biobase gplots limma VennDiagram]; }; + Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.32.0"; sha256="18qr6wvvarvjzrknlyfvpdwpzw4gqwfjawaxpyhhp3yhx3n6vyxq"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; }; + FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.34.0"; sha256="17i096gjbsl7zgy2i3nh2nl4gdly7pkn151m0bn120cd4381r3nv"; depends=[minfi]; }; + FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="2.0.0"; sha256="1wqpibrfjzrpi2mzij9kjq74z3mi08dmfd9j7jviwq7c1hskycj4"; depends=[AnnotationHub ExperimentHub genefilter minfi nlme quadprog S4Vectors SummarizedExperiment]; }; + FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.24.0"; sha256="0f2vm1qf9irqk7xj0fdkvaigxpv2srni187378g6zbm93srrzs9d"; depends=[minfi]; }; + FlowSorted_CordBloodCombined_450k = derive2 { name="FlowSorted.CordBloodCombined.450k"; version="1.12.0"; sha256="1pf01g7pi37rrqgqan8zq8v0q3h27p2djff3f5zqrfn3d02if4lv"; depends=[AnnotationHub ExperimentHub IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi SummarizedExperiment]; }; + FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.22.0"; sha256="0kk416rfl2sgx6xfnja32jx2yjixnm306kj1h7vg3xnfy843gzin"; depends=[minfi]; }; + FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.32.0"; sha256="0s5a1lsjpwibqaz1ghwlk1my5fz11kqhymb7j42c3jx6sc3ka6g5"; depends=[minfi]; }; + GIGSEAdata = derive2 { name="GIGSEAdata"; version="1.14.0"; sha256="1lkbgyb8camaay0yjkvhl946dmashzkraax7janqprhdjmhphv5h"; depends=[]; }; + GSBenchMark = derive2 { name="GSBenchMark"; version="1.16.0"; sha256="0j8sjp999ri7zj9xyfm5cfyggikp5ihyblqbcy16rzi02lz7ns99"; depends=[]; }; + GSE103322 = derive2 { name="GSE103322"; version="1.2.0"; sha256="0h84bf69kvqrvyp2syf3vjs8avmrjsgv3gfm2ib5wxnrgfxn6czq"; depends=[Biobase GEOquery]; }; + GSE13015 = derive2 { name="GSE13015"; version="1.4.0"; sha256="08wrw8h81mn5cg29ry11mchxl51h9nnfdxn9yjf8ivcjhklcy14f"; depends=[Biobase GEOquery preprocessCore SummarizedExperiment]; }; + GSE159526 = derive2 { name="GSE159526"; version="1.2.0"; sha256="18i9dgvhvzjcnx63qchd6004yinqj8mzxm8yk3dcgcgb2r082f04"; depends=[]; }; + GSE62944 = derive2 { name="GSE62944"; version="1.24.0"; sha256="029fpng282x99yapi70zxlkqbh2xy6l0b4plmf2hsakg45ybg693"; depends=[Biobase GEOquery]; }; + GSVAdata = derive2 { name="GSVAdata"; version="1.32.0"; sha256="1mgjy2pg9j4zr8jacfj7h6q4c62s9mmg3dbkkirwq4gki9i5hdi0"; depends=[Biobase GSEABase hgu95a_db]; }; + GWASdata = derive2 { name="GWASdata"; version="1.34.0"; sha256="0ii9gc17hjx1gw06q63s0gykvch673rxa7czda76dvj0qvcpx5v0"; depends=[GWASTools]; }; + GenomicDistributionsData = derive2 { name="GenomicDistributionsData"; version="1.4.0"; sha256="1asclqpk9ixbf147n246246f3ciw9qsyq1i0v0xgd1nbzbqn12pn"; depends=[AnnotationFilter AnnotationHub BSgenome data_table ensembldb ExperimentHub GenomeInfoDb GenomicFeatures GenomicRanges]; }; + GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.24.0"; sha256="1032lyisc5gzzsnzdahb9mz03pi7z103n8vyfjpzrri8jhrbbaya"; depends=[]; }; + HCAData = derive2 { name="HCAData"; version="1.12.0"; sha256="0dqi06mwa7ss1z28pic8kr1v85njqv596z0ik3g5qfjjfvc0h2za"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + HD2013SGI = derive2 { name="HD2013SGI"; version="1.36.0"; sha256="1wbf00bvd6rpszzfwplk6q7b5v7ih2jdjbcncg9php2ji76ij58w"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; }; + HDCytoData = derive2 { name="HDCytoData"; version="1.16.0"; sha256="1vdk7r7v3vvj6lils4a30sys5507qnlmdk775bl4grv16j9lf2pb"; depends=[ExperimentHub flowCore SummarizedExperiment]; }; + HEEBOdata = derive2 { name="HEEBOdata"; version="1.34.0"; sha256="02mjs27ypk2gfa5rvgclb143a1hl3cciddcm5wmg90666q85bm2z"; depends=[]; }; + HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.36.0"; sha256="1hqljpiing2gzkizqrdv4wh3w0gwp6m9zs9y68sqhdr4f9w7azn6"; depends=[]; }; + HMP16SData = derive2 { name="HMP16SData"; version="1.16.0"; sha256="1s9h638wawm15gmqrgarxxhmwbvaq86i36s81knbzamhrw95gbgq"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors stringr SummarizedExperiment tibble]; }; + HMP2Data = derive2 { name="HMP2Data"; version="1.10.0"; sha256="0pnrhx1x3wlxjq42igcdzdw4zgqb89gh666f7l48msqx2gk2lhly"; depends=[AnnotationHub assertthat data_table dplyr ExperimentHub kableExtra knitr magrittr MultiAssayExperiment phyloseq readr S4Vectors SummarizedExperiment]; }; + HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.16.0"; sha256="12whx0pl9461xbak5r9zi6ggx5is8sk6mgrbjwlmx3mbr9am116v"; depends=[]; }; + HarmanData = derive2 { name="HarmanData"; version="1.24.0"; sha256="1fq4kh7669fw1qxzfz42zfsw9fg30niqzz8g54qaxyl3ljbfw7f4"; depends=[]; }; + HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.18.0"; sha256="11mwkl3nahvrb85r0jgbam464w5hcwsg28a5dm9fqzrn94m15nkx"; depends=[ExperimentHub]; }; + HelloRangesData = derive2 { name="HelloRangesData"; version="1.22.0"; sha256="0lpnqzrdkq1k8rwk7b4kg3848nqiyr3wl6vncy963xqnjdwpghzc"; depends=[]; }; + HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.16.0"; sha256="0imrwr1iy3slnvs59xmpcdrly76kqy3h8bldr78dzi9r1an30gg4"; depends=[]; }; + HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.32.0"; sha256="18rdg07s4m4p9vqk3lp83x7p0zvfrfnvg2khhb7shqjdd9ya14i2"; depends=[]; }; + HighlyReplicatedRNASeq = derive2 { name="HighlyReplicatedRNASeq"; version="1.8.0"; sha256="0m95mh6bjjvd343ysnl97npif557sjxm0nfa2iw3sr2x4pwma1zz"; depends=[ExperimentHub S4Vectors SummarizedExperiment]; }; + Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.32.0"; sha256="1wmszish22yb9sh2c3i6fz9l17w0nxba44zbd2p5jks7frgryh8c"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; }; + HumanAffyData = derive2 { name="HumanAffyData"; version="1.22.0"; sha256="15l3fyvl534zr2nn102dg98r82iwy9g0imnmcpyrmx467p74iqb7"; depends=[Biobase ExperimentHub]; }; + IHWpaper = derive2 { name="IHWpaper"; version="1.24.0"; sha256="061v9ax5pf3f9l54xhyskz7bmb4878xf2s05z5rwhbw6hj7v9bcn"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; }; + ITALICSData = derive2 { name="ITALICSData"; version="2.34.0"; sha256="0vg5aq813n709hmnc1w51ynjml23q6xsgg9my3p4zim765clc1c4"; depends=[]; }; + Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.32.0"; sha256="1jlx2gpnlgivfhggl6cvj1spv4y7pyr6pxlgn8859nrw49jjdj1p"; depends=[]; }; + IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.34.0"; sha256="1h9vlif4dnzgffvab31i6qp2zcx8aph9wr71vgif9ayzc4gmx2if"; depends=[]; }; + Iyer517 = derive2 { name="Iyer517"; version="1.38.0"; sha256="0as22vdrw61hr39lx29wa17qfmz47q267l9i4l4jxldcm349f609"; depends=[Biobase]; }; + JASPAR2014 = derive2 { name="JASPAR2014"; version="1.32.0"; sha256="1palkamhw8wdnliyw9avpk1l6kpz8dhnghjpzdk4wd0dgfnfj2hr"; depends=[Biostrings]; }; + JASPAR2016 = derive2 { name="JASPAR2016"; version="1.24.0"; sha256="0g80f0zgl42p84br6ni8q0q4p2xcdc675kx1l6lf35jb845vmsgy"; depends=[]; }; + KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.16.0"; sha256="0bx4d7sjfr9p4ivwcpqblsshkymlkgyxm4mpxc3mhcv579ir2nnr"; depends=[Biobase BiocGenerics]; }; + KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.34.0"; sha256="1abzkzvz0i8yvdpwrcrdzrq1g99rhkws2b9b7zafrqn8zljwm3kc"; depends=[Biobase BiocGenerics]; }; + KOdata = derive2 { name="KOdata"; version="1.22.0"; sha256="1x26wcysd56wzijcsrs1r0rd8j9naylfbbr90b54wd24sfrq970c"; depends=[]; }; + LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.4.0"; sha256="028gzmv555wb7pq41058sbacspjzxxqrmkx690aimn93y7pg0lh3"; depends=[ExperimentHub]; }; + LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.34.0"; sha256="17awdhd23fwr3i81vfcbgnnjibjp7q3z497zmmgm5q8fx79wfrrb"; depends=[IRanges KernSmooth]; }; + ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.28.0"; sha256="0j4acswm0ixgkbgffnricap8rf1b3jp3mzlbb95p46jh9kxm9b2f"; depends=[methylPipe]; }; + LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.32.0"; sha256="1ff43qfigrbh78bdc15agvkwagc6vr6m9qjpirqkchvhj9xzdssv"; depends=[]; }; + LungCancerLines = derive2 { name="LungCancerLines"; version="0.34.0"; sha256="163za70mbpqkkm5q027vilh4q9b7pzqwakqn51hkk58qi2sbrl18"; depends=[Rsamtools]; }; + M3DExampleData = derive2 { name="M3DExampleData"; version="1.22.0"; sha256="033572y1qr5dz279rvd64w4rivxzhafnmh71cr8g9qkf04g8ani3"; depends=[]; }; + MACSdata = derive2 { name="MACSdata"; version="1.4.0"; sha256="175g4x0hvbyjwm8vs64rj19685ibdncq9ph972c1rip7nlzj0raw"; depends=[]; }; + MAQCsubset = derive2 { name="MAQCsubset"; version="1.34.0"; sha256="13r4a7m08h6n0b7c4q3w30sh1w8qxhhck66fmx95jimdjdzf04zy"; depends=[affy Biobase lumi]; }; + MAQCsubsetILM = derive2 { name="MAQCsubsetILM"; version="1.34.0"; sha256="1k8l3vc2xrsf9hni3dfim2r9dll6cc0njzdg7ailf9hi8lbc03xp"; depends=[Biobase lumi]; }; + MEDIPSData = derive2 { name="MEDIPSData"; version="1.32.0"; sha256="02s88wlxgnl90ypgzxbspv1zqngcd3gbr9li7ng4snp5l7sgmpb7"; depends=[]; }; + MEEBOdata = derive2 { name="MEEBOdata"; version="1.34.0"; sha256="14cx5rv123z4pglbdwyndm8v1zvvf683ilv102ryzvnwsp2g2xi5"; depends=[]; }; + MIGSAdata = derive2 { name="MIGSAdata"; version="1.20.0"; sha256="0raz59fz568n9hsams91higf6f6q98nlgcapz7lnw9df7d5zmagv"; depends=[]; }; + MMAPPR2data = derive2 { name="MMAPPR2data"; version="1.10.0"; sha256="1aibly4pw3swf6qyx4gsnfqs0p4xv8wcq37lmd0b58bvp27ficrd"; depends=[Rsamtools]; }; + MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.32.0"; sha256="1zfyp8q2849zmmp2b0ny7wbrhhsdvyv15xf2glifnhbpzdrrwjhl"; depends=[]; }; + MOFAdata = derive2 { name="MOFAdata"; version="1.12.0"; sha256="12vhcc6q52x8gxnjplb8bdn98pmrkvldc1h9hkvhgs810i96dhz9"; depends=[]; }; + MSMB = derive2 { name="MSMB"; version="1.14.0"; sha256="11a3rv09bljyvx4n3rhl83iyxsk5idl53cd1l016dc21z0wy9aki"; depends=[]; }; + MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.16.0"; sha256="0vxqpk6ldsj1bmiyjalss3k3hkwic04vs4flh75djxhg113zsxx3"; depends=[]; }; + MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.16.0"; sha256="0qgfml7p39ra6svj9i510ff01k4nbns85068a7gh1v4l85ykgd11"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; + MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.16.0"; sha256="1rjj8jxcaaz10rq7aanz3zw0z6sb1lmzy1ya8cl2icyalcm6q2k6"; depends=[AnnotationHub Biobase ExperimentHub impute lattice SummarizedExperiment]; }; + MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.16.0"; sha256="0ppyf8pmq0pr00dvhb98qp19gcfsf9w6ix9d1yky8cf7l8czkqia"; depends=[AnnotationHub ExperimentHub impute S4Vectors SummarizedExperiment]; }; + MethylAidData = derive2 { name="MethylAidData"; version="1.28.0"; sha256="1gkv07qn4qxya3gcfppdg42wywzrq0ama56alf1z15knwn67a8ps"; depends=[MethylAid]; }; + MethylSeqData = derive2 { name="MethylSeqData"; version="1.6.0"; sha256="13yfqksyda8m1ckph00cw37j5nvs3aidbqb6bmg9gkw4fg21hc7i"; depends=[ExperimentHub GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors SummarizedExperiment]; }; + MouseGastrulationData = derive2 { name="MouseGastrulationData"; version="1.10.0"; sha256="1drbxbh3qzmpwcbk8ly2r9hw5lr99mvzf5gjnl972glfy6fvjbnj"; depends=[BiocGenerics BumpyMatrix ExperimentHub S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + MouseThymusAgeing = derive2 { name="MouseThymusAgeing"; version="1.4.0"; sha256="1imk0s5h9v9nbwvdfd5gnmlqblx3wnws32spdp0q40p3dg5zgp4d"; depends=[BiocGenerics ExperimentHub S4Vectors SingleCellExperiment SummarizedExperiment]; }; + NCIgraphData = derive2 { name="NCIgraphData"; version="1.32.0"; sha256="0k9gc22zzfcnqz5ahz250ycry1l1rczlfpbg9j1dwjbfs76zib2f"; depends=[]; }; + NGScopyData = derive2 { name="NGScopyData"; version="1.16.0"; sha256="15kggy2abfq7a92yh3r0diqz0ddxfzbk3p0v85jh8h38swv94766"; depends=[]; }; + NanoporeRNASeq = derive2 { name="NanoporeRNASeq"; version="1.6.0"; sha256="1cy36izd1h3c7qz9f6igvljph8bmvlvhyvppwgiqr7k3paflf489"; depends=[ExperimentHub]; }; + NestLink = derive2 { name="NestLink"; version="1.12.0"; sha256="029rj9cv22cmk1arl68836mq7cav3rnc9z4kidakfk163r830v5p"; depends=[AnnotationHub Biostrings ExperimentHub gplots protViz ShortRead]; }; + Neve2006 = derive2 { name="Neve2006"; version="0.34.0"; sha256="0izjgs9p8rw4psvvwg6cpwa5pbh8i9fz1q8slllarj1yndadmg0l"; depends=[annotate Biobase hgu133a_db]; }; + NxtIRFdata = derive2 { name="NxtIRFdata"; version="1.2.0"; sha256="048j52rbdys46a3m9ki9aphrrhlh10zq4yl19qnp65h53hcz0lg5"; depends=[BiocFileCache ExperimentHub R_utils rtracklayer]; }; + OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="1.14.0"; sha256="1ahyaalpn9rimy65jjmxgx5dapblvwibw153rgwjkz4k4p1v9p3v"; depends=[MultiAssayExperiment]; }; + ObMiTi = derive2 { name="ObMiTi"; version="1.4.0"; sha256="0nhlg364rvhaz9xv3hkszkzas4i1qx14nssv802fxlqqg87gjx7n"; depends=[ExperimentHub SummarizedExperiment]; }; + OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.18.0"; sha256="14pvc2d2zs3h9r3rh1rip63rj2gvm0lzf949b5jb05qhkc26wzm6"; depends=[rJava]; }; + PCHiCdata = derive2 { name="PCHiCdata"; version="1.24.0"; sha256="12qb4wl6fjqhyavvm3y41psagkzrazlvhnwhdrbcp6qg3ql8770s"; depends=[Chicago]; }; + PREDAsampledata = derive2 { name="PREDAsampledata"; version="0.36.0"; sha256="1ia19649kxi1w1i5qlnl3hbrwq28y7mlrz3nldr76p1kgyzym6lq"; depends=[affy annotate Biobase PREDA]; }; + PWMEnrich_Dmelanogaster_background = derive2 { name="PWMEnrich.Dmelanogaster.background"; version="4.30.0"; sha256="0shqpciskbbdz7h0w873fp9gdajsxy7wham58hsik8zg8sjq7nlq"; depends=[PWMEnrich]; }; + PWMEnrich_Hsapiens_background = derive2 { name="PWMEnrich.Hsapiens.background"; version="4.30.0"; sha256="1giqjwwndgx23kcmwl6qlfqkqs2g57rqy9a6rk7f1a2h9n6v92vh"; depends=[PWMEnrich]; }; + PWMEnrich_Mmusculus_background = derive2 { name="PWMEnrich.Mmusculus.background"; version="4.30.0"; sha256="1g4pxsc7rl2bg9q1gvypwydf0fr31raqw3mxdnmprgai2rv9g339"; depends=[PWMEnrich]; }; + PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.24.0"; sha256="0wf30zng7prgb4qgv8mjgg0c3d6h3ni82gb2vpv6n127vkbnv99g"; depends=[]; }; + PathNetData = derive2 { name="PathNetData"; version="1.32.0"; sha256="09mlmqax71q4ha4sq2ar33g4nsv9sszp5jl359mpncpgf08fkpnf"; depends=[]; }; + PepsNMRData = derive2 { name="PepsNMRData"; version="1.14.0"; sha256="0jfyr3ggx5i8bzhh5ajm2s78knrnf6zaq9mhy6nyq619546dcx3p"; depends=[]; }; + PhyloProfileData = derive2 { name="PhyloProfileData"; version="1.10.0"; sha256="0qv146pgzjhmdsg8yclddvc6bpxm60j1jhjfv8f9jqsnvbllqzbm"; depends=[BiocStyle Biostrings ExperimentHub]; }; + ProData = derive2 { name="ProData"; version="1.34.0"; sha256="0zg74wn11w2fd69lykl06k9sb05z9cmac3w1s2gmfdjqy3nbpi88"; depends=[Biobase]; }; + PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.22.0"; sha256="1da28hnshxq2vy6sgs4118akxy3im92xda576vqw76nnjhp9ly1w"; depends=[CAMERA LOBSTAHS xcms]; }; + QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.26.0"; sha256="0x7n8xqf510w4hirdr8g2g4dcx2jy9psgnnb15gsvrcgvds802av"; depends=[QDNAseq]; }; + QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.26.0"; sha256="0ij9clgyczvkxc7529sz4zxdkrfpdjasmbbfycka228l1xqqnxqr"; depends=[QDNAseq]; }; + QUBICdata = derive2 { name="QUBICdata"; version="1.24.0"; sha256="08a9fvs4cigl3bx6s3my92njbj9gpkfsdyrsimng4ykkll25jwji"; depends=[]; }; + RGMQLlib = derive2 { name="RGMQLlib"; version="1.16.0"; sha256="1zkwf3wll7b786kfpbdzqhzhqmznx6bgdc4vlpzb1i2zrbsw5c5z"; depends=[]; }; + RITANdata = derive2 { name="RITANdata"; version="1.20.0"; sha256="0s8d8im2czp79qvch87y3swpfmcnpp3pa341zj3byiyc7agz1w6d"; depends=[]; }; + RLHub = derive2 { name="RLHub"; version="1.2.0"; sha256="1s6mkz1kv3rl68rzpnpi5m507d9pja2c58vzdximmpl2b764j41k"; depends=[AnnotationHub ExperimentHub]; }; + RMassBankData = derive2 { name="RMassBankData"; version="1.34.0"; sha256="147jdpi61jg87p6j957k6cca4a2sx5kzrbm4b9pszzrzrcvqq8w5"; depends=[]; }; + RNASeqRData = derive2 { name="RNASeqRData"; version="1.14.0"; sha256="1bn6d0zn40abqn7gvr82i89r1fwyaj4wb0hvg6rqcmmqdfqhbrs6"; depends=[]; }; + RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.34.0"; sha256="0yamvw8r3zjmy4rvxswpdmav0n1pirk930c0z20chqzmz0fld7ls"; depends=[Biobase fields gdata genefilter lattice MASS RNAinteract sparseLDA]; }; + RNAmodR_Data = derive2 { name="RNAmodR.Data"; version="1.10.0"; sha256="0c0y7mvj4mnq9zsirayj74pxsj78qksbsaisbfikbkbabx7v827b"; depends=[ExperimentHub ExperimentHubData]; }; + RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.34.0"; sha256="1qs34fnlkbjlnqfk65m63lqbhqd773yzi4dwv8b1rbv75hqcmywc"; depends=[]; }; + RRBSdata = derive2 { name="RRBSdata"; version="1.16.0"; sha256="18ijbyfajiydarrr2wqf7y4spf40k3vyg1bsm8qdam6l1rg40d1i"; depends=[BiSeq]; }; + RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.24.0"; sha256="1m36f15spkg6bkiympda0r4sb2nai7bnajvg3cfdypym0javmjni"; depends=[RTCGA]; }; + RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.24.0"; sha256="11r3xy84zfzp4ws9g8jn0lqbqdydlzsi6vgxh1xyf7jpv1m3qw1r"; depends=[RTCGA]; }; + RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.24.0"; sha256="0lhcmp9mm1f8biw05nlg0hiqiyad7lz2dl06x9bhyz8aggdpdx5m"; depends=[RTCGA]; }; + RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.26.0"; sha256="0iipvf5ii185q4nghwqmk3mp4s7wdbs90hk3mdc96f7qs5h53jzb"; depends=[RTCGA]; }; + RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.24.0"; sha256="12yjxqq49jbss409ms8c4a5lxn613d0cbin2h8033z2ldk73zsnp"; depends=[RTCGA]; }; + RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.24.0"; sha256="0si0xr1d6013f1jylk6srx5n4nfrlr97dywh8f4hdwdk5fsn2nsv"; depends=[RTCGA]; }; + RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.24.0"; sha256="0xf6yf3phyagmysavgrcfpv7n7h3vgvf5in1m4n5my0168b9xi35"; depends=[RTCGA]; }; + RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.26.0"; sha256="1zdpghr75vj9x4ldw0gzxkanca4zzl3fzmx61jr9jh5lkgj8h4vv"; depends=[RTCGA]; }; + RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.26.0"; sha256="1qmp5nlvqcb2699fcyxgngsyaygygajypj8m1an419xiy3kxnjdp"; depends=[RTCGA]; }; + RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.16.0"; sha256="003gf94pfsimc1f2xwm7jdndkng9hdllhvq92il5y4kjr6ky9bkr"; depends=[Biobase]; }; + RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.16.0"; sha256="1wi7g1246p04ld97x11pkb7hy4490cq5pfw404xhcmavm6sbrsps"; depends=[data_table]; }; + ReactomeGSA_data = derive2 { name="ReactomeGSA.data"; version="1.10.0"; sha256="1z0sridzwyfq3cxvmv97c5mg96z5aylwpma35kizzi1y5y7xjqnr"; depends=[edgeR limma ReactomeGSA Seurat]; }; + RegParallel = derive2 { name="RegParallel"; version="1.14.0"; sha256="12ak24899dp4184xc2g549d22zxv297aaz1c5s3zva821bv43djq"; depends=[arm data_table doParallel foreach iterators stringr survival]; }; + RforProteomics = derive2 { name="RforProteomics"; version="1.33.1"; sha256="0wsbalnq82h02hs6v71ng2b6gw1kpcjz1ypzcxv5fr13aaivl512"; depends=[BiocManager biocViews MSnbase R_utils]; }; + RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.28.0"; sha256="13vjqi6n6swz08qzadycn873rls1wkzprmf2rawx7mrbsy1cn5zh"; depends=[GenomicRanges]; }; + RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.28.0"; sha256="0wdzm89rn5z33sk3jw9f8yq6f23k5m5pv6ysbf8irw6s1g6y3xr3"; depends=[GenomicRanges]; }; + RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="2.4.0"; sha256="0nbdm9r70qihdsn4q2gaf78wxk5g5a8jbzzk3axiwpidxapyq1xs"; depends=[GenomicRanges]; }; + RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.28.0"; sha256="0ylvnw19j3fqgyp014zyzzpwhwj54bcl6r8gc45zs9py82zqkmyr"; depends=[GenomicRanges]; }; + RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.28.0"; sha256="129rv2zlqgqr3n64gx6y2ippqn2lrqsh6g5br1zh8awr9lbkp6bb"; depends=[GenomicRanges]; }; + RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.28.0"; sha256="1qwah52mc5pn27nm8c5byjyf121830yvfi9a4qsg5lqlwysfpnl9"; depends=[edgeR]; }; + SBGNview_data = derive2 { name="SBGNview.data"; version="1.10.0"; sha256="0gh4qs5r13x8rlf3f7kn63czbc5rzds5j27flk60yx70cinvgf6q"; depends=[bookdown knitr rmarkdown]; }; + SCATEData = derive2 { name="SCATEData"; version="1.6.0"; sha256="0g7hydh8prb9in64iyn993kg1i933l0nian00rh8n7lhhlhsmcrd"; depends=[ExperimentHub GenomicAlignments GenomicRanges]; }; + SCLCBam = derive2 { name="SCLCBam"; version="1.28.0"; sha256="0mmw9dzpx66hdp0cmzq8j2w07ckg1887l50j1a6szanrm0ln04ig"; depends=[]; }; + SNAData = derive2 { name="SNAData"; version="1.42.0"; sha256="1xlqmfscf55q5j3k0ssvyyvgf5xqj9ypypdj7qcwn9izgn6ihpv1"; depends=[graph]; }; + SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.32.0"; sha256="184kf4zqy924p776pzdmlbly8whgkh7kdqqcpmyra388mmish97h"; depends=[]; }; + SNPhoodData = derive2 { name="SNPhoodData"; version="1.26.0"; sha256="1mzpkhr9apm5smp8w7rxdd61yizn283hhr2hb3s9ym05nrfgwyvy"; depends=[]; }; + STexampleData = derive2 { name="STexampleData"; version="1.4.4"; sha256="0ind1q3p66wsamps6953vq6bw1xfrmwp920ji4n854qmnc9syb2q"; depends=[ExperimentHub SpatialExperiment]; }; + SVM2CRMdata = derive2 { name="SVM2CRMdata"; version="1.28.0"; sha256="1ycd1ihlms44y4hqq3n7l8hhcc3fkvihmsq3vm5434k1zx0prby6"; depends=[]; }; + SimBenchData = derive2 { name="SimBenchData"; version="1.4.0"; sha256="1g8yd5h878r2cnh9s3iwc2q60syrxyjg5riiv4jzz3xv0s1g6awd"; depends=[ExperimentHub S4Vectors]; }; + Single_mTEC_Transcriptomes = derive2 { name="Single.mTEC.Transcriptomes"; version="1.24.0"; sha256="0kzwjl6a0y8j4kabnwdnprb19riqirpfcf465rz59w5gyvqg2k2q"; depends=[]; }; + SingleCellMultiModal = derive2 { name="SingleCellMultiModal"; version="1.8.0"; sha256="0cmzjqhgjkgmji3bps387siq2s2k8flv4sksk6rh754wklry7bpm"; depends=[AnnotationHub BiocFileCache BiocGenerics ExperimentHub HDF5Array Matrix MultiAssayExperiment S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + SingleMoleculeFootprintingData = derive2 { name="SingleMoleculeFootprintingData"; version="1.4.0"; sha256="1mi27fg1xnibz41fw2xlnj81mbszs8jfxiirky5x3358xac8n5fy"; depends=[ExperimentHub]; }; + SomatiCAData = derive2 { name="SomatiCAData"; version="1.34.0"; sha256="06k9g27f92zvahr52jrdn4i504n215w02hrk3p888yh2jyypkjif"; depends=[]; }; + SomaticCancerAlterations = derive2 { name="SomaticCancerAlterations"; version="1.32.0"; sha256="14yxvvw2x2qmp3vz7xiqhfdmykcmjw36sikdi046zqfcfqxq1vrw"; depends=[GenomicRanges IRanges S4Vectors]; }; + SpikeIn = derive2 { name="SpikeIn"; version="1.38.0"; sha256="1mvzixy1s5xvfgi3hf1z21mp7587v1byb6vsi9yiacc6knm55rih"; depends=[affy]; }; + SpikeInSubset = derive2 { name="SpikeInSubset"; version="1.36.0"; sha256="1rx3lsf50v17rq5yd45w35xbh79rh6pmyx73didv4afsy8vcq984"; depends=[affy Biobase]; }; + TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.32.0"; sha256="09nawqwz6gq1bp9vgqg2nm0vb1f6id7nzqi742iz5h98p21y3jn9"; depends=[Rsamtools xtable]; }; + TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.32.0"; sha256="1hiqa6ww5rkl9vlp5fn5fzgr1yl8br8h9s8knhcyfw83bmr7ihkb"; depends=[]; }; + TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.20.0"; sha256="0ffhinj97jgk6z2qa1bk1dzijk5vjii41g8cnbs0rcshpllc0yiq"; depends=[SummarizedExperiment]; }; + TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.16.0"; sha256="1mb2z59acs1pi1gqvgjyh62wnmbxskc5l0p42gpjajsjip5x1x7g"; depends=[]; }; + TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.16.0"; sha256="0sjdk1kxpj3k4slrinywgd261jwfwa6ba6b19fz6gjik0w900f7n"; depends=[Biobase]; }; + TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.16.0"; sha256="16p8zbrrfah2hmkjysp3aagvwwn8g437yqrf1a0wg2jaxh246z1l"; depends=[Biobase]; }; + TENxBUSData = derive2 { name="TENxBUSData"; version="1.10.0"; sha256="0kblhl9b0vjngfnh8rdbsbs26pgmy1xx47kvjj7qcawb3s0blc96"; depends=[AnnotationHub BiocGenerics ExperimentHub]; }; + TENxBrainData = derive2 { name="TENxBrainData"; version="1.16.0"; sha256="1cb7sbk1hn1i6lw5k3q6p7s501q0yrighfcw0l5abvb4mz9xm1rh"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + TENxPBMCData = derive2 { name="TENxPBMCData"; version="1.14.0"; sha256="1mybd23fck9g4wqvhbh1fjvwzn23h91dlr7wvrh91s61yajj01hd"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; }; + TENxVisiumData = derive2 { name="TENxVisiumData"; version="1.4.0"; sha256="05w1xqkd8bb2vi1i667pshpvs0913ybx87x3vlhj2fzmx5jjsllq"; depends=[ExperimentHub SpatialExperiment]; }; + TMExplorer = derive2 { name="TMExplorer"; version="1.6.0"; sha256="1wl7l2ag9s6z1vw4q6594mayyidcc0zpq9y4wvqcpsr2zvfnz8si"; depends=[BiocFileCache Matrix SingleCellExperiment]; }; + TabulaMurisData = derive2 { name="TabulaMurisData"; version="1.14.0"; sha256="16788gn24810c3qn4s2fpffl6sgfzar2wyv5fnay3p29iv66nlww"; depends=[ExperimentHub]; }; + TabulaMurisSenisData = derive2 { name="TabulaMurisSenisData"; version="1.2.0"; sha256="17vx35lgkhl5w6ny9a3dc4p5rrv5ywh1qg8lvka4d2jarv18gn8s"; depends=[AnnotationHub ExperimentHub gdata HDF5Array SingleCellExperiment SummarizedExperiment]; }; + TargetScoreData = derive2 { name="TargetScoreData"; version="1.32.0"; sha256="0xrfp2jqsp5kf85mc9bbalpr09hhzspcg0305mzf9cyf8lpms3n4"; depends=[]; }; + TargetSearchData = derive2 { name="TargetSearchData"; version="1.34.0"; sha256="16kc003g7l9k6yq0z7b6a4yzgpkz4b343fzzg3lf9ww1565jfgr0"; depends=[]; }; + TimerQuant = derive2 { name="TimerQuant"; version="1.26.0"; sha256="0hp6lfxnwmv18ci15gjlq5va2926j1cmv1lbxqjmjmkj6p28gbdy"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; }; + VariantToolsData = derive2 { name="VariantToolsData"; version="1.20.0"; sha256="1jdi9045iq09gb3rfnz5kc83qhqjbqkda2vg410d86v78r2zzkwp"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; }; + VectraPolarisData = derive2 { name="VectraPolarisData"; version="1.0.0"; sha256="0lp3fn9x4hi2fihnc66cvziw0x05qmcki06za5z7k761pbc2cgk0"; depends=[ExperimentHub SpatialExperiment]; }; + WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.28.0"; sha256="027ga0wzqmd1j792drz6qllk221d6rfva3hfqd7g0grbzb0lipnj"; depends=[]; }; + WGSmapp = derive2 { name="WGSmapp"; version="1.8.0"; sha256="08g71y2ix377if47jsymdqip6kiy0hs198r84a83pwxrbj4a66zf"; depends=[GenomicRanges]; }; + XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.34.0"; sha256="0d7gnay3jhcxmyyh45ggq6dfh83zz0s2z9rjr98dbx3jyhhy52mn"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; }; + adductData = derive2 { name="adductData"; version="1.12.0"; sha256="02r7p1645vhhf7wn5x0aklmf7l97h6fjb8v9mldim4waccmpyg48"; depends=[AnnotationHub ExperimentHub]; }; + affycompData = derive2 { name="affycompData"; version="1.34.0"; sha256="0lbdjmpy4460dv9s7rkbbcvhzpyqmb8hr40hbmnrjmzi8b5rs2j0"; depends=[affycomp Biobase]; }; + affydata = derive2 { name="affydata"; version="1.44.0"; sha256="1d8ims7hks536v739r5hhfkkzyzqrf398aqal3hzyfm0psv15jbp"; depends=[affy]; }; + airway = derive2 { name="airway"; version="1.16.0"; sha256="1m0llmb0z8vw8as81qb2jawcxgad5ivgl6s3vgm89zdr3a2lpxjz"; depends=[SummarizedExperiment]; }; + alpineData = derive2 { name="alpineData"; version="1.22.0"; sha256="187axprwpb25lfcxw5mxbxsav07iqkiknd0yh77iff9hhzf06van"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; }; + antiProfilesData = derive2 { name="antiProfilesData"; version="1.32.0"; sha256="1b8xxkg5qi8xzs4ax9cvga9b6sbvwfna5w5hi3x38lpxlzyp9p45"; depends=[Biobase]; }; + aracne_networks = derive2 { name="aracne.networks"; version="1.22.0"; sha256="0w6v6hj1c43pbadb20rxmfhxgqinz0rrz6nc59mzb6zm2ydcg7z5"; depends=[viper]; }; + bcellViper = derive2 { name="bcellViper"; version="1.32.0"; sha256="1lwiii0fp2msnlk6c9c1xyh03g5cmx1r6jf98sylcaz93s63gz0f"; depends=[Biobase]; }; + beadarrayExampleData = derive2 { name="beadarrayExampleData"; version="1.34.0"; sha256="0pi4raxy7jwsbl2ds49wh00v2k5gp42y3cl7ipy5ammkjyjz4fa0"; depends=[beadarray Biobase]; }; + benchmarkfdrData2019 = derive2 { name="benchmarkfdrData2019"; version="1.10.0"; sha256="0v3j3v987gz6wi4z7l4wavagkk59rmkgfy9ynw6v6v53gjmwjrsd"; depends=[ExperimentHub SummarizedExperiment]; }; + beta7 = derive2 { name="beta7"; version="1.34.0"; sha256="0z161a395ykd2kylfmqql4ma6g4124sykmab488vz7cy7kmgi55j"; depends=[marray]; }; + biotmleData = derive2 { name="biotmleData"; version="1.20.0"; sha256="1ayxv1nlzfrpk1q2rrjlfyiyzhnz5hyd1mpw40qyp1sby7qkhwin"; depends=[]; }; + biscuiteerData = derive2 { name="biscuiteerData"; version="1.10.0"; sha256="0nda6b8mkv93s513y0xfgxvi7zn8v07jx323ii709rknlncm6qqw"; depends=[AnnotationHub curl ExperimentHub]; }; + bladderbatch = derive2 { name="bladderbatch"; version="1.34.0"; sha256="1dpbaqsqizyi99r0imf5m4lndhhrkyiaqii9bi8rp18fjbjdd72k"; depends=[Biobase]; }; + blimaTestingData = derive2 { name="blimaTestingData"; version="1.16.0"; sha256="1xngnh8fgwnvxcycnxzbaqlwr478aqacj9xh9zcig6xvkqbvdan0"; depends=[]; }; + bodymapRat = derive2 { name="bodymapRat"; version="1.12.0"; sha256="0cm0pxk47axi2kp0jl2ix03vbg4q54fsq9wbrlz6gy0zmab05qy8"; depends=[ExperimentHub SummarizedExperiment]; }; + breakpointRdata = derive2 { name="breakpointRdata"; version="1.14.0"; sha256="19xmwvx70m4s6naxw1m13qdyxaswmq94mhxc71gnfr80w9l28qdx"; depends=[]; }; + breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.34.0"; sha256="1a658xkiimhbhjic4mwgxccsrqfi11l8sjyhxlqzwhqpg25s52yc"; depends=[]; }; + breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.34.0"; sha256="11vbsam86zq8zpc871gnham6dpvz4pivj8bjk64r9nclcl6msflm"; depends=[]; }; + breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.34.0"; sha256="11p77vhp4qjibglc2gyj3ljcgzxijh6gakq1jy9x08hwbzbk59cp"; depends=[]; }; + breastCancerUNT = derive2 { name="breastCancerUNT"; version="1.34.0"; sha256="12736cr61fnaq2gladlnpa6247zk3mbgx4gr3m3swfr1xzfjmr96"; depends=[]; }; + breastCancerUPP = derive2 { name="breastCancerUPP"; version="1.34.0"; sha256="1688njb87jlbil7j0lpa6cvzqs9j82nxjcjqwxvizwwmwmsybygw"; depends=[]; }; + breastCancerVDX = derive2 { name="breastCancerVDX"; version="1.34.0"; sha256="0w1vd8v1ld81a20l1rzjbfsf3xyd6r85ifgpyl63rmk4zlyk9qa1"; depends=[]; }; + brgedata = derive2 { name="brgedata"; version="1.18.0"; sha256="0ls9qyv6p8g64cibrxavch2z9yb057mmhk0wj8a3qzp2yammp866"; depends=[Biobase SummarizedExperiment]; }; + bronchialIL13 = derive2 { name="bronchialIL13"; version="1.34.0"; sha256="08jal96cv14wym7c6yv10yh4qcgzqdgi6x231v21asmawl0gjv8n"; depends=[affy]; }; + bsseqData = derive2 { name="bsseqData"; version="0.34.0"; sha256="1izn9qwsvr6nic70b5iwpn06if2wvrsh4rvrhlj275q4s91l1apk"; depends=[bsseq]; }; + cMap2data = derive2 { name="cMap2data"; version="1.32.0"; sha256="1x28q46y1794hr8b2bmdy5agwy3j8chdk6lczwkqsqb7qaccbgxl"; depends=[]; }; + cancerdata = derive2 { name="cancerdata"; version="1.34.0"; sha256="06dijhvjzi60fd7bh6m4inf1yvc7d2p6swmp887pfjap5id99hb3"; depends=[Biobase]; }; + ccTutorial = derive2 { name="ccTutorial"; version="1.34.0"; sha256="1ag9jv5y6ky3xqqvsln7xcpa7z4p4jm3vqz16dmxm92ldkrpff8f"; depends=[affy Biobase Ringo topGO]; }; + ccdata = derive2 { name="ccdata"; version="1.22.0"; sha256="1glgrc3z7q2pigivhh4q0aa4y354bxfxyhinz8vdr2nkrnh5fl6c"; depends=[]; }; + celarefData = derive2 { name="celarefData"; version="1.14.0"; sha256="0awh198v9swj6mpa3pihvms9ml74798hpywhfqmmakpqb8i5nmk8"; depends=[]; }; + celldex = derive2 { name="celldex"; version="1.6.0"; sha256="1fjldmhb9yg6yr3aq5ldvc8xwqw71ix4cdlr53xxckgwljjq7x10"; depends=[AnnotationDbi AnnotationHub DelayedArray DelayedMatrixStats ExperimentHub S4Vectors SummarizedExperiment]; }; + chipenrich_data = derive2 { name="chipenrich.data"; version="2.20.0"; sha256="1hg728bncvw008fzpw0cxy2haq5ynnriymyb2dwwa9yi9bzqhcs2"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicRanges IRanges readr rtracklayer S4Vectors]; }; + chipseqDBData = derive2 { name="chipseqDBData"; version="1.12.0"; sha256="06j0jh3kg0n0jfa34iwmdc4j1h96wgvg0i5rwiidmdzii30y24a3"; depends=[AnnotationHub ExperimentHub Rsamtools S4Vectors]; }; + chromstaRData = derive2 { name="chromstaRData"; version="1.22.0"; sha256="1ajwnkibpi01c93nrplxhy6grw8jj5219g4pii4rkan4k5815kv1"; depends=[]; }; + clustifyrdatahub = derive2 { name="clustifyrdatahub"; version="1.6.0"; sha256="1ynj9h7cgg8kdb97g8bd0rvzpyjfqbs91c1jcj5gsml2mqn20zb9"; depends=[ExperimentHub]; }; + cnvGSAdata = derive2 { name="cnvGSAdata"; version="1.32.0"; sha256="08ag0mj6wbhgrs5csvri6rm2c61hxzspgm6p2ggikxp8b98dq249"; depends=[cnvGSA]; }; + colonCA = derive2 { name="colonCA"; version="1.38.0"; sha256="15pid97gpg0hcdh8xw8r72qlm1k76l6m0zmh12f1q2z792bqv3v2"; depends=[Biobase]; }; + crisprScoreData = derive2 { name="crisprScoreData"; version="1.0.0"; sha256="0qv93yx25zrs7xn3w8f298b1v0jmgsdzcnlivhr8va95rlaa36zp"; depends=[ExperimentHub]; }; + curatedAdipoArray = derive2 { name="curatedAdipoArray"; version="1.8.0"; sha256="0xhm84d1g1mv4x8lavwx87346123nd7957pbvw5ajhg42ipz8qwl"; depends=[]; }; + curatedAdipoChIP = derive2 { name="curatedAdipoChIP"; version="1.12.0"; sha256="1c5mg1f4d6rk4dx0vfs5f8fk15gh9gqnh2n0z6a21ial3pz2hq16"; depends=[ExperimentHub SummarizedExperiment]; }; + curatedAdipoRNA = derive2 { name="curatedAdipoRNA"; version="1.12.0"; sha256="11gb3c4bvzxhhxrzi5y6p2703r4nz9qf8w996sh9giqq0kdk1iaf"; depends=[SummarizedExperiment]; }; + curatedBladderData = derive2 { name="curatedBladderData"; version="1.32.0"; sha256="1qbwxfpicrqq2xmghj0j93nk6fyn9nqr3kj7hh4hhzrv71kgrlha"; depends=[affy]; }; + curatedBreastData = derive2 { name="curatedBreastData"; version="2.24.0"; sha256="1lfb8dw4c3dg2dxqdy0ibv53savz6qyavj03lyxvzw3rg052lwfy"; depends=[Biobase BiocStyle ggplot2 impute XML]; }; + curatedCRCData = derive2 { name="curatedCRCData"; version="2.28.0"; sha256="18cwky29pic2ixabr5ckzl98g9xm1yj36l3xaxk37jav7brnabx1"; depends=[BiocGenerics nlme]; }; + curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="3.4.1"; sha256="1m9ynssy0gm5wiam966y7ijdf058k7qk8idd7c7afd1xib99b6v7"; depends=[AnnotationHub dplyr ExperimentHub magrittr mia purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect TreeSummarizedExperiment]; }; + curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.34.0"; sha256="0fnvsjxs3rfr0vwlnqzgs3121jad85vff3f34rjiq5mmgj8d3szs"; depends=[affy BiocGenerics]; }; + curatedTBData = derive2 { name="curatedTBData"; version="1.2.0"; sha256="1ca5vnyzcdarrdczffj88nlchzkx3nrhpxh4r8446yvgm9nq1f13"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment rlang]; }; + curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.18.0"; sha256="0h3mpwy6lhyn8hfry13sdjgb35gqyi3g26igfjqzshc5wvsniwpr"; depends=[AnnotationHub ExperimentHub HDF5Array MultiAssayExperiment S4Vectors SummarizedExperiment]; }; + davidTiling = derive2 { name="davidTiling"; version="1.36.0"; sha256="1a2wcgw7dpsk86516c0qqy6lspc5ilip9ym1hdjmdmldw653qgw6"; depends=[Biobase GO_db tilingArray]; }; + depmap = derive2 { name="depmap"; version="1.10.0"; sha256="0378blcy4k440xfjsfr6d8fzgv8v1gbfd7jq2jqawj8s3in3g8sc"; depends=[AnnotationHub dplyr ExperimentHub]; }; + derfinderData = derive2 { name="derfinderData"; version="2.14.0"; sha256="02p2zz9i9g6z20fvc29i31nrw5jamw0sk9yf3yxq3211xprrq556"; depends=[]; }; + diffloopdata = derive2 { name="diffloopdata"; version="1.24.0"; sha256="1h7d755akxbsb68mhddqck759hfb5ahcv99040xl5pl0wg76qhx4"; depends=[]; }; + diggitdata = derive2 { name="diggitdata"; version="1.28.0"; sha256="1i1bj3fhkp9g3szcsf4z78mq2nwk9s7gbhwzjz87gpq1ly0wi5zm"; depends=[Biobase viper]; }; + dorothea = derive2 { name="dorothea"; version="1.8.0"; sha256="0yby99xncj8625rjc71wfp164bkbc00kbqaxx1nhhcxx5wyb5li7"; depends=[bcellViper dplyr magrittr viper]; }; + dressCheck = derive2 { name="dressCheck"; version="0.34.0"; sha256="05rajbidn01mv711xm8w5ida2dxkykwby5q3fm6wr9vk9hdg6h8y"; depends=[Biobase]; }; + dyebiasexamples = derive2 { name="dyebiasexamples"; version="1.36.0"; sha256="01j7gwzdg6q2l2nqbmmhvg4c06irjlgvqj3gcwff5m2372p7qgn5"; depends=[GEOquery marray]; }; + easierData = derive2 { name="easierData"; version="1.2.0"; sha256="1hvm8xhjm7xx2m8r9w2hfk1naj37mnyzg76ig2yszi7g20xxkn07"; depends=[AnnotationHub ExperimentHub SummarizedExperiment]; }; + ecoliLeucine = derive2 { name="ecoliLeucine"; version="1.36.0"; sha256="1nncm8k9xrn7pi89skbqkp01bwnkr8myzxvwvdqwwpdhz23h67iq"; depends=[affy ecolicdf]; }; + emtdata = derive2 { name="emtdata"; version="1.4.0"; sha256="0wfqyyncn8y7dbpiq9ydqglbci1zcaxqph78h3f0m91gsyb46n48"; depends=[edgeR ExperimentHub SummarizedExperiment]; }; + epimutacionsData = derive2 { name="epimutacionsData"; version="1.0.0"; sha256="00l7mjryq7zf83mf9zwfs6pih7lncyz0310rvbgmgxij0d2ihcs0"; depends=[]; }; + estrogen = derive2 { name="estrogen"; version="1.42.0"; sha256="0s6gaxks4z6dnj304j2hliqyqs8iwqdvf5xmca31xms9sdix57nv"; depends=[]; }; + etec16s = derive2 { name="etec16s"; version="1.24.0"; sha256="1s4jq4nzl33fll7k9b88divyhi8phkv2n5629q2qa8ag2rvdw50g"; depends=[Biobase metagenomeSeq]; }; + ewceData = derive2 { name="ewceData"; version="1.4.0"; sha256="14wnj0dxdbrr57blvi1kmgjxcmy8h6b85zyjk4ksnz3jqnb3x4zx"; depends=[ExperimentHub]; }; + faahKO = derive2 { name="faahKO"; version="1.36.0"; sha256="1z23c2nlgf1ssfa9fmh6qbymsgwj8w0sslnyyiwmq6f1c5slagdk"; depends=[xcms]; }; + fabiaData = derive2 { name="fabiaData"; version="1.34.0"; sha256="0ps43wp6ywz3g92dckcmczh8g26fz4hg2w63bjzkpyl9pp6g70jn"; depends=[Biobase]; }; + ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.34.0"; sha256="1493i3pgq12afp97rm5nlslkfqh87vr0hrw2r3m6d76xkaxmq47f"; depends=[lumi]; }; + fibroEset = derive2 { name="fibroEset"; version="1.38.0"; sha256="0hyb9cmqpnl98gpvjh5mrrbnzpwsqlnngm0h88rca6jsxgzypyxg"; depends=[Biobase]; }; + fission = derive2 { name="fission"; version="1.16.0"; sha256="1xp8a0qvskb4arl2h937zvdx23z7xgjfa46lfk35pyl398vvr04p"; depends=[SummarizedExperiment]; }; + flowPloidyData = derive2 { name="flowPloidyData"; version="1.22.0"; sha256="12n5zaikca17w1bwc4hb9hxj28vdka1gz2x62hzd552baimv694c"; depends=[]; }; + flowWorkspaceData = derive2 { name="flowWorkspaceData"; version="3.8.0"; sha256="1z67crxi4vd2s4sbraj8i1qdnbdjr28gij2ygv3j0ys6jscwvz6q"; depends=[]; }; + frmaExampleData = derive2 { name="frmaExampleData"; version="1.32.0"; sha256="1am40f3b3g6rgbsji52a674x8s5xk2zgbkv7z4mrwcqy3qbvv2kp"; depends=[]; }; + furrowSeg = derive2 { name="furrowSeg"; version="1.24.0"; sha256="04bnqdbfmkl42cpflq4krwcc6g5znkajw56vpcxa8sahcqlzlz50"; depends=[abind dplyr EBImage locfit tiff]; }; + gageData = derive2 { name="gageData"; version="2.34.0"; sha256="00s2aig9r0bvk45brc0shildrgl2z0i0k8xlvqc9h1s274nnslk9"; depends=[]; }; + gaschYHS = derive2 { name="gaschYHS"; version="1.34.0"; sha256="07s469vdj9zbqaq660asv10qlsg03ga1ln0hkq5xxqqjnwliy0nr"; depends=[Biobase]; }; + gatingMLData = derive2 { name="gatingMLData"; version="2.36.0"; sha256="0ljyahrd2v4kz8y26h16apc2yz8a1fg54190ryy30v7gfdaacbad"; depends=[]; }; + gcspikelite = derive2 { name="gcspikelite"; version="1.34.0"; sha256="1lhgsinx128qi2rcm577smpkdnh91c9nn05737pp0ww2ys8pziqk"; depends=[]; }; + geneLenDataBase = derive2 { name="geneLenDataBase"; version="1.32.0"; sha256="0p4rmd3qszsnyn47mfbk96zfa0bhpyyvsh4ma1ligjrsnmkicsaz"; depends=[GenomicFeatures rtracklayer]; }; + genomationData = derive2 { name="genomationData"; version="1.28.0"; sha256="0ckdgmarndpz6r0y9sd4nmypzjgivj32w2890yl15xmxkx4397fh"; depends=[]; }; + golubEsets = derive2 { name="golubEsets"; version="1.38.0"; sha256="02f30hxg9ap1na59vgq6zqpnxba1yv38v458bx2ppxj2pj7jldh1"; depends=[Biobase]; }; + gpaExample = derive2 { name="gpaExample"; version="1.8.0"; sha256="0zv7djz65lm8a3d8ybg1nm5r2b7byh55g78v5jmskh6jkv9njd9w"; depends=[]; }; + grndata = derive2 { name="grndata"; version="1.28.0"; sha256="14hn88p65jkd44skf07v358rr5hbncp3mlsz2xl5mfyxgl124fcd"; depends=[]; }; + h5vcData = derive2 { name="h5vcData"; version="2.16.0"; sha256="04cwqilsaiw9x709lhb9vrv75lhvhfx7k7zw400nf5h4pn0cgxw4"; depends=[]; }; + hapmap100khind = derive2 { name="hapmap100khind"; version="1.38.0"; sha256="0rabyxvlxgzawdwa3q0xy2iqdlkcgmzbmqc4052ndm7wdh4h4s97"; depends=[]; }; + hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.38.0"; sha256="162wx2g4ghh6b92d9q446js7qk2j5ahajvbynckg2ggnzavd7v1f"; depends=[]; }; + hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.38.0"; sha256="0wpnr9xvpaki01hqkh5pm29d2vcb153646k9b9m3xvlv5ra3qr9f"; depends=[]; }; + hapmap500ksty = derive2 { name="hapmap500ksty"; version="1.38.0"; sha256="1g9kv2jd0527m000scr871pk08h98cf9b8mnasgbm5isvfpn0fwk"; depends=[]; }; + hapmapsnp5 = derive2 { name="hapmapsnp5"; version="1.38.0"; sha256="0dwfgz9pyx24mn3vncxp3ddb0bj42zxjd6p5pm34rzwzsw8zlvby"; depends=[]; }; + hapmapsnp6 = derive2 { name="hapmapsnp6"; version="1.38.0"; sha256="0byanf3i5yws4hwnxpd5b2vkr9iqvc0h2nlbxqhbc6b5ny7n0fsc"; depends=[]; }; + harbChIP = derive2 { name="harbChIP"; version="1.34.0"; sha256="1q17lynp7alv95p6vn515iamyqz3s0vhj3vnyzrjyhswb1vy3fs4"; depends=[Biobase Biostrings IRanges]; }; + healthyControlsPresenceChecker = derive2 { name="healthyControlsPresenceChecker"; version="1.0.0"; sha256="1sjicfsamv22r5f913g4xjspnrpqcrdcq5w9yqwqn7wz88sbarld"; depends=[geneExpressionFromGEO GEOquery magrittr xml2]; }; + healthyFlowData = derive2 { name="healthyFlowData"; version="1.34.0"; sha256="0iw2a6fdnhq1zqhldsrg7z8b55qg23l721rgx2i8v09ivsrk79hj"; depends=[flowCore]; }; + hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.34.0"; sha256="1n4jhlgvqggyf2qa2iqxkxf6hqsaawq32h5r8ns904jdllq4ryp3"; depends=[]; }; + hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.16.0"; sha256="1ws42wafyvr5931vjv0zcyfg979zhjms8kfmmcjjwqbvgp6b8nxd"; depends=[Biobase]; }; + hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.34.0"; sha256="1q8a5away3iz8skc093djn85sakixhijr2i0yfhbl50y1jpfxn9c"; depends=[]; }; + hgu2beta7 = derive2 { name="hgu2beta7"; version="1.36.0"; sha256="0zmhxv5fjyfjxd7rqcr79yb8vkk014hinphmq604pzcdym29dmaa"; depends=[]; }; + humanStemCell = derive2 { name="humanStemCell"; version="0.36.0"; sha256="1i6gn462x09g9c6fb98bgchs7hwnrv5wanbpy41zcird6a8jb205"; depends=[Biobase hgu133plus2_db]; }; + imcdatasets = derive2 { name="imcdatasets"; version="1.4.0"; sha256="1l5g0biw9nnfy3zbbfd5bir12yy7s88q12mdx4vb7x184855sk7k"; depends=[cytomapper DelayedArray ExperimentHub HDF5Array S4Vectors SingleCellExperiment]; }; + kidpack = derive2 { name="kidpack"; version="1.38.0"; sha256="0pwrf9h1qgfb20jjd5izy6f01v14bzg43k2d8mmx3553ha9w1xi4"; depends=[Biobase]; }; + leeBamViews = derive2 { name="leeBamViews"; version="1.32.0"; sha256="0nqrg0k5g62kqbmhq0y795afx34zxzlmgsjszs8byfdhd8gbpz14"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; }; + leukemiasEset = derive2 { name="leukemiasEset"; version="1.32.0"; sha256="1hzwdcfv0w4y877h4ahr2cmvv0svkjv73l77d7m309ikfbzmdqax"; depends=[Biobase]; }; + lumiBarnes = derive2 { name="lumiBarnes"; version="1.36.0"; sha256="072i02dshanxfxwpg7ibcp2vxyyqfw7q28r2a3f3lq9gph0pd865"; depends=[Biobase lumi]; }; + lungExpression = derive2 { name="lungExpression"; version="0.34.0"; sha256="1lskd4gapfhsrl5ydzv3bjs5n7085wzx91dq8bziv7pmhzl9pvyw"; depends=[Biobase]; }; + lydata = derive2 { name="lydata"; version="1.22.0"; sha256="1z48qsbbxxjlfwmb7xyasskdy95paab96077ps45v41cwkwjv7kd"; depends=[]; }; + mAPKLData = derive2 { name="mAPKLData"; version="1.28.0"; sha256="1122nnkhhcyrf36v3saybfi3llarjsa8fnh6f5c41d5x6fyjp2mf"; depends=[]; }; + mCSEAdata = derive2 { name="mCSEAdata"; version="1.16.0"; sha256="0n6dk7n7gi3ffdwvji6nkl90hhrb1jg0c1dyj0xrd8sf2cnpn8kh"; depends=[]; }; + macrophage = derive2 { name="macrophage"; version="1.12.0"; sha256="0ml8v92w021fmzsn4yl90ap3l4l3b9c1pk8pzsrm122p82wzlyms"; depends=[]; }; + mammaPrintData = derive2 { name="mammaPrintData"; version="1.32.0"; sha256="03h0pjwaasbb635l1csfrcsjzrfw18cmk071p9f4w57rkx11wbmi"; depends=[]; }; + maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.40.0"; sha256="1smi1kaygc8gdcdkv358ghblwvsz8239g4ck2d4h8gq9z4jkkqn4"; depends=[]; }; + mcsurvdata = derive2 { name="mcsurvdata"; version="1.14.0"; sha256="0nrss5d2vb88wygsm4b44zxkaq619svjf8j3gg5r6x13ss5x0vcr"; depends=[AnnotationHub Biobase ExperimentHub]; }; + metaMSdata = derive2 { name="metaMSdata"; version="1.32.0"; sha256="0n1nnljns0aq8xxa881r8p72wwipfbx4046wz97034y39i0l9rcj"; depends=[]; }; + methylclockData = derive2 { name="methylclockData"; version="1.4.0"; sha256="0qzyc01rhmay3h1pmbk0jskszrmpgsng32j40j8wqnnpzhmklwf2"; depends=[ExperimentHub ExperimentHubData]; }; + miRNATarget = derive2 { name="miRNATarget"; version="1.34.0"; sha256="1yfsdkxc7ns4z0swrjg2pq3kfpgq9rrhrxsiqljnkw65c1g4h3q3"; depends=[Biobase]; }; + miRcompData = derive2 { name="miRcompData"; version="1.26.0"; sha256="1ww126vnlq2c36py0939i3vv7y6pf9kb6akgq8x96l90ri8zdpcg"; depends=[]; }; + microRNAome = derive2 { name="microRNAome"; version="1.18.0"; sha256="0p187zs1fhi55zm4yjbvx6xvdlynlm1r66x9dcd2xldwam8qmliz"; depends=[SummarizedExperiment]; }; + microbiomeDataSets = derive2 { name="microbiomeDataSets"; version="1.4.0"; sha256="1pbwx3cq78k333mmrmy8h68l1k3g3r62a8qjx8ysg8q99q1yn63w"; depends=[ape BiocGenerics Biostrings ExperimentHub MultiAssayExperiment SummarizedExperiment TreeSummarizedExperiment]; }; + minfiData = derive2 { name="minfiData"; version="0.42.0"; sha256="04idswjc4kslnpx1yf990pd8fl7wk5v9x4rgbv73d0s0g578ajd6"; depends=[IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest minfi]; }; + minfiDataEPIC = derive2 { name="minfiDataEPIC"; version="1.22.0"; sha256="0mkq4q39fjbal4qrx8vx51579kzhhyryk017cgjzqj9cwycyr720"; depends=[IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest minfi]; }; + minionSummaryData = derive2 { name="minionSummaryData"; version="1.26.0"; sha256="03h803p8xcndy5gsrdy20rb4714rxj31g31z82rg7hkwn0cvqxkx"; depends=[]; }; + mosaicsExample = derive2 { name="mosaicsExample"; version="1.34.0"; sha256="13fjkal88ag1dxw5n4dpkbzrnhffqjn4pym5vwzgnczyggz40c8y"; depends=[]; }; + mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.34.0"; sha256="0ip3238dkyy9773q85535q09yawxnc1f1sdvl9s0ydys7v4rcxih"; depends=[]; }; + msPurityData = derive2 { name="msPurityData"; version="1.24.0"; sha256="05l7ym2vnspnkdl78f5b2jyby8x4qvjhmbhqmkd8nsz7sb2q2f67"; depends=[]; }; + msd16s = derive2 { name="msd16s"; version="1.16.0"; sha256="0bnvsfgsl8ssin8s7g3lmdfk9jvbbzs6cn748i5vl5ac96567bb5"; depends=[Biobase metagenomeSeq]; }; + msdata = derive2 { name="msdata"; version="0.36.0"; sha256="0nqb7d7fa9l15bxy3s9wmy2h79jb6ldwww0hzk5mifabacmzx691"; depends=[]; }; + msigdb = derive2 { name="msigdb"; version="1.4.0"; sha256="1qla2hjzq99513nyknhbb44zpp65q52j81mn6g9ya3wg9686ggvg"; depends=[AnnotationDbi AnnotationHub ExperimentHub GSEABase org_Hs_eg_db org_Mm_eg_db]; }; + msqc1 = derive2 { name="msqc1"; version="1.24.0"; sha256="0j0gqn32chs0vmcj309xk9y2qh856zj6ps16n39ad4d0bbc1l7y1"; depends=[lattice]; }; + mtbls2 = derive2 { name="mtbls2"; version="1.26.0"; sha256="1k0ravb8h23xvk8jlc1vh73slsw5alqcfdrw8p6mzggzfd6l189i"; depends=[]; }; + muscData = derive2 { name="muscData"; version="1.10.0"; sha256="1vwvjjd53j4im8jpckcgc4x9ldy3s8gzknc30yw1i67f4zw7zlcq"; depends=[ExperimentHub SingleCellExperiment]; }; + mvoutData = derive2 { name="mvoutData"; version="1.32.0"; sha256="08mmwc8x47wc91ncil6bqbhy1iz8hr153yma52zbsw0nhdhs7b87"; depends=[affy Biobase lumi]; }; + nanotubes = derive2 { name="nanotubes"; version="1.12.0"; sha256="0cm2d8wp6dy6m2jbj42inbba117zzf137g86xy07hn563izksqcw"; depends=[]; }; + nullrangesData = derive2 { name="nullrangesData"; version="1.2.0"; sha256="1yynisn5zw41kaspli9zs2k03w8ar457p0dsd37lph3cfdgniysv"; depends=[ExperimentHub GenomicRanges InteractionSet]; }; + oct4 = derive2 { name="oct4"; version="1.12.0"; sha256="0jkhk1p7z5ydxwab2g9ayhqfmxayrrwswr9lwbx84n7jm3gdkncr"; depends=[]; }; + optimalFlowData = derive2 { name="optimalFlowData"; version="1.8.0"; sha256="0g72cliwh3jpgz3qsfp3rv3glhp6v0ligfzp3kh0xgb6g9nwc246"; depends=[]; }; + pRolocdata = derive2 { name="pRolocdata"; version="1.34.0"; sha256="1b1kvnym9aigkpv4n1wp8ybp507hwiqv8hc3x4hv72kdlfphy0qh"; depends=[Biobase MSnbase]; }; + parathyroidSE = derive2 { name="parathyroidSE"; version="1.34.0"; sha256="1h33x55c4gbzmh085skqif04wdcvjp2l9fm55qzwws27kwd30c16"; depends=[SummarizedExperiment]; }; + pasilla = derive2 { name="pasilla"; version="1.24.0"; sha256="1vsxh7mv2krkbdqs5gsgjsxarjbll0bpyk94syrwh56z67n7jyib"; depends=[DEXSeq]; }; + pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.34.0"; sha256="1dcnas0d592kcmnd95g3l13b8fxf0kiwbpyxmhfvrmms9i2d6dfc"; depends=[]; }; + pcxnData = derive2 { name="pcxnData"; version="2.18.0"; sha256="1gwc793c7r7qi5bmwlxh6fg59v8jzs753ilw102s5r4kq8r1fb4h"; depends=[]; }; + pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.34.0"; sha256="1r9xqqgx2asn47j1ib1z3v5ybxd88mjfyi7b64llhlv1s9igp645"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + pepDat = derive2 { name="pepDat"; version="1.16.0"; sha256="079wasdnd4j7pply4lmr7b41i84gj1x6yfp6pq7f7kbmr451c9hq"; depends=[GenomicRanges]; }; + plasFIA = derive2 { name="plasFIA"; version="1.24.0"; sha256="0r69msj7yby4kw2nj1am7ww7ia7kian4bpx2j3v4il909hw8xr76"; depends=[proFIA]; }; + plotgardenerData = derive2 { name="plotgardenerData"; version="1.2.0"; sha256="0arag030zfvpd6niq5bxxkkc3dg86hhl9dcbh1knjgqa3njfyh50"; depends=[]; }; + ppiData = derive2 { name="ppiData"; version="0.34.0"; sha256="10xbp12wim5kj1h2vkxn9x22fd92s2038w653y81jwbh2hyidybf"; depends=[AnnotationDbi graph]; }; + prebsdata = derive2 { name="prebsdata"; version="1.32.0"; sha256="1sza6d27rx05dg7xbzypjjf2h7m4jawhb2y0w1n8k9d57b9m6sij"; depends=[]; }; + preciseTADhub = derive2 { name="preciseTADhub"; version="1.4.0"; sha256="0sraqrvhxf7xva522rsj9hhl0hhb89fxrihywbw2w0vpv7ia08j7"; depends=[ExperimentHub]; }; + prostateCancerCamcap = derive2 { name="prostateCancerCamcap"; version="1.24.0"; sha256="0kyfr8s89dv9psl4r0g7mr02y8yvsjpd6k2iqzbdwj3jqhwxcw4p"; depends=[Biobase]; }; + prostateCancerGrasso = derive2 { name="prostateCancerGrasso"; version="1.24.0"; sha256="1qsaz1fqf9iky3a4sjy0di4bamg3996qna99jcxp7nal0bj1q44j"; depends=[Biobase]; }; + prostateCancerStockholm = derive2 { name="prostateCancerStockholm"; version="1.24.0"; sha256="0a9yph83xrpql6k5ixic37v3ccpyf358d0ia5bgn05xfacd1il4b"; depends=[Biobase]; }; + prostateCancerTaylor = derive2 { name="prostateCancerTaylor"; version="1.24.0"; sha256="1g657bfhk2x5gldkxy3k4c66cjnlj0j5j0daza9y8sdibk6cagxf"; depends=[Biobase]; }; + prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.24.0"; sha256="17pz2k8h1i9x37d2j4v4ybnyn2fl79d839bv41jxiciacxp3az5c"; depends=[Biobase]; }; + ptairData = derive2 { name="ptairData"; version="1.4.0"; sha256="1lplv1g38a7d3mlqdy18b7n9n2l834a2rqifsvvxdfimww8vdihq"; depends=[rhdf5 signal]; }; + pumadata = derive2 { name="pumadata"; version="2.32.0"; sha256="1zw60nvpdbnnbfr6ffjbhp7aay9xlk8r4dwi8di9g2352xp9i14h"; depends=[Biobase oligo puma]; }; + pwrEWAS_data = derive2 { name="pwrEWAS.data"; version="1.10.0"; sha256="11p1z66q6bpvh89cp1rqnm0kkfkdxfm47p7nfd9c45y15qpzbplw"; depends=[ExperimentHub]; }; + qPLEXdata = derive2 { name="qPLEXdata"; version="1.14.0"; sha256="046xpnqp4pdvldbmw4klkjlhpzvjhv1zq8vamzzqc9hni6sjl3cc"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; }; + rRDPData = derive2 { name="rRDPData"; version="1.16.0"; sha256="0lnff12cb120dl48pi5p2sc77vp4zapr35w9p9l669hwdlvy2jv5"; depends=[rRDP]; }; + rcellminerData = derive2 { name="rcellminerData"; version="2.18.0"; sha256="1bpsdnhdkyva7rbcxgwf0y85dngs2l43hb2c5wp6iafzvnb402dp"; depends=[Biobase]; }; + restfulSEData = derive2 { name="restfulSEData"; version="1.18.0"; sha256="095iv7hvdl26y2mbwa3cv0gdr7gn3irgwm72cvz4y5lkr4ifyafx"; depends=[DelayedArray ExperimentHub HDF5Array SummarizedExperiment]; }; + rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.34.0"; sha256="1yc5vz3cvpwk449lga3f5w1x1xjp8a7c17k30z3wim4iv6g8ag9x"; depends=[]; }; + sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.20.0"; sha256="1sg4h9pw3lwa1k01s9nhbh1l0w8w81q6m254hqs1ga8k8kawkvap"; depends=[SummarizedExperiment]; }; + scATAC_Explorer = derive2 { name="scATAC.Explorer"; version="1.2.0"; sha256="01m728vbpbxnn2zzwhv4baf0xjqld1d6ak6cv0kcjwk66wn4r3vf"; depends=[BiocFileCache data_table Matrix S4Vectors SingleCellExperiment]; }; + scRNAseq = derive2 { name="scRNAseq"; version="2.10.0"; sha256="131x1q69grn16rr7lr6vyphds5mdx5z3kc6nhpfisrxjia9dly0x"; depends=[AnnotationDbi AnnotationHub BiocGenerics ensembldb ExperimentHub GenomicFeatures GenomicRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scTHI_data = derive2 { name="scTHI.data"; version="1.8.0"; sha256="1awrjw0fhypxlz7s4lj0fvhmj0av8xgh191zz5imqvimfzjvf985"; depends=[]; }; + scanMiRData = derive2 { name="scanMiRData"; version="1.2.0"; sha256="06d91vwbirp75f5aaflny7ngfhnz834a1750vah2x1jwikd427zg"; depends=[scanMiR]; }; + scpdata = derive2 { name="scpdata"; version="1.4.0"; sha256="0rxrsay1ifzwkd32jjfa91phnjvndk136w5is01rx1hzibpv1x7j"; depends=[AnnotationHub ExperimentHub QFeatures S4Vectors SingleCellExperiment]; }; + seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.28.0"; sha256="0ay0gzjl6j4aqaq7cybqw0cv3xfxhg83psib3z0m438gs2in1011"; depends=[]; }; + seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.32.0"; sha256="0khf5mjl9slfvba6x876j8d2ngijwxfm8k2d01fj9sh3hdbi7y8n"; depends=[]; }; + seqc = derive2 { name="seqc"; version="1.30.0"; sha256="1x9cs6sfzwnppkb80n1vgy3lj85bk7c81994r3c12sna5sil8df7"; depends=[Biobase]; }; + serumStimulation = derive2 { name="serumStimulation"; version="1.32.0"; sha256="18mbg1n6c38qcz4r5n83x2796hb0wqhzqv997nlvjmxrzb53sh9z"; depends=[]; }; + sesameData = derive2 { name="sesameData"; version="1.14.0"; sha256="1c9bcrah4vz2035px6yv8djqrmpnn7i6y01pgy1hqlwsn24px3nf"; depends=[AnnotationHub ExperimentHub GenomeInfoDb GenomicRanges IRanges readr S4Vectors stringr]; }; + seventyGeneData = derive2 { name="seventyGeneData"; version="1.32.0"; sha256="0axbgyn0cqhfq7mqivawpd0q268r2njm3igv6hjqcvvp2s7gzffn"; depends=[]; }; + shinyMethylData = derive2 { name="shinyMethylData"; version="1.16.0"; sha256="1ww9abjsqyyprz5706d4ny3i42a0czrdmxjaq3wlryiqgn54jrl3"; depends=[]; }; + signatureSearchData = derive2 { name="signatureSearchData"; version="1.10.0"; sha256="1wq9pk2g4zriijrlc6bqizi4rvmag3m0nrnml3qhqhn1jcc065g3"; depends=[affy Biobase dplyr ExperimentHub limma magrittr R_utils rhdf5]; }; + simpIntLists = derive2 { name="simpIntLists"; version="1.32.0"; sha256="07jscl1yd3dix0igsxw1fsyhsgqhqf0la6p6958jypy2chih4wp8"; depends=[]; }; + spatialDmelxsim = derive2 { name="spatialDmelxsim"; version="1.2.0"; sha256="126agbyablnn3b2gh4fkvlqf1mm1krvk01bxl0x41f6l4dm5gj6a"; depends=[ExperimentHub SummarizedExperiment]; }; + spatialLIBD = derive2 { name="spatialLIBD"; version="1.8.2"; sha256="0ld519a58034sklhl2j9670xqakksg7fb3xaswbq5rq03jv22c8k"; depends=[AnnotationHub benchmarkme BiocFileCache BiocGenerics cowplot DT ExperimentHub fields GenomicRanges ggplot2 golem IRanges jsonlite magick Matrix paletteer plotly png RColorBrewer rtracklayer S4Vectors scater sessioninfo shiny shinyWidgets SingleCellExperiment SpatialExperiment SummarizedExperiment tibble viridisLite]; }; + spqnData = derive2 { name="spqnData"; version="1.8.0"; sha256="190jkvra5zsml0hxmw96nxg3fz5cnq6apcxcqsncq9raz30w8qqq"; depends=[SummarizedExperiment]; }; + stemHypoxia = derive2 { name="stemHypoxia"; version="1.32.0"; sha256="0rfnka092sd0qb6vs7yawwkjw763rdaayyr7bv4618qqx2i6kllz"; depends=[]; }; + stjudem = derive2 { name="stjudem"; version="1.36.0"; sha256="0a7qrs9r76zlzd6kmfid8wzvv3k47y3w95ydqphd5pic9c6r56a3"; depends=[]; }; + systemPipeRdata = derive2 { name="systemPipeRdata"; version="2.0.1"; sha256="1g5641hkx2di7j2kgd13v1zih4ddm9wljrzi7swr0dxb01vqvckh"; depends=[BiocGenerics Biostrings jsonlite remotes]; }; + tartare = derive2 { name="tartare"; version="1.10.0"; sha256="1857nmpd64zlbk0i7jk7ql04kkmyznr355jd3zml44x2zbip96mg"; depends=[AnnotationHub ExperimentHub]; }; + timecoursedata = derive2 { name="timecoursedata"; version="1.6.0"; sha256="0f2m6d4q6ayk6sqz3d4gnh4w9c5z91m4j8pjfi1932q4a86smhr5"; depends=[SummarizedExperiment]; }; + tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.34.0"; sha256="01kb0papl4rac44bc4rmjmjx424xb00rw3dvnc78qzz03cx90xq4"; depends=[]; }; + tinesath1probe = derive2 { name="tinesath1probe"; version="1.34.0"; sha256="0cadrq4aklyzy3sflnpwy8n4r7pkmb3mn0n1y0yqpljlqbdd9g8l"; depends=[AnnotationDbi]; }; + tissueTreg = derive2 { name="tissueTreg"; version="1.16.0"; sha256="14hiv2d3z502j334342ab0rqf1qwapf2g56ipbwm4jdw2yz2aqbd"; depends=[]; }; + tofsimsData = derive2 { name="tofsimsData"; version="1.24.0"; sha256="1gykmyv9lyylpha5a2fh2n0dhmd70mnhr502m0kimwg5hr2z1w8z"; depends=[]; }; + topdownrdata = derive2 { name="topdownrdata"; version="1.18.0"; sha256="0d0532jc8lpqh99yqygl4mxg7al4a74mdm8j45a36qa4q53m4xpf"; depends=[topdownr]; }; + tuberculosis = derive2 { name="tuberculosis"; version="1.2.0"; sha256="0b9286bcb4c4ygalrp2la1s48rq7csz83l2svgbx9da6jdc32n65"; depends=[AnnotationHub dplyr ExperimentHub magrittr purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.34.0"; sha256="0wnplck86wsc8d86cvk2a6w21s809cpvzdj1y17x1p5f9f0zkra7"; depends=[Biobase]; }; + tximportData = derive2 { name="tximportData"; version="1.24.0"; sha256="0mgbwpybg2xd6x1ijrflmjh5w63qz6ylnzszbbyp437n618m7riy"; depends=[]; }; + vulcandata = derive2 { name="vulcandata"; version="1.18.0"; sha256="1y5gjk6l97bdyk1pm9c2yqszcykd0pdmc81sn7g4m0x81mhd81c6"; depends=[]; }; + xcoredata = derive2 { name="xcoredata"; version="1.0.0"; sha256="0qwg720yhjkmdhh6i5g4pwwf2pfjbxj74nb9n20sypzc673dab9z"; depends=[ExperimentHub]; }; + yeastCC = derive2 { name="yeastCC"; version="1.36.0"; sha256="1mpfsn9iyw37yxipdczj15hnxyvdrcn5sr2xvqlxj7csyfp2kxw9"; depends=[Biobase]; }; + yeastExpData = derive2 { name="yeastExpData"; version="0.42.0"; sha256="0sg4lr09s0iw99j7j7fq9xfaidnfxc4n0jjgnhghpdcqymm8ns82"; depends=[graph]; }; + yeastGSData = derive2 { name="yeastGSData"; version="0.34.0"; sha256="0bbqj899cr6d1nkf80bcbksnp4689kp38hg74gwvbj8ln7v0f7mk"; depends=[]; }; + yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.32.0"; sha256="0rb3mf94g5px7xk7r25xjgx9hiawjlkv9zsqf6n2z2gnglfplic1"; depends=[]; }; + yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.34.0"; sha256="0167p4g10ixbmnjyh08yz8dsai6d1ifr8ms5vd6jgmfwddznk8mi"; depends=[]; }; + zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.16.0"; sha256="0nsdm0fvqjak54rg2f2jsn3l0a1y53mzb7pm2f7p0x75a7ays9p5"; depends=[]; }; + ABAData = derive2 { name="ABAData"; version="1.24.0"; sha256="1wgniq7ibvjj6dx63ixr3i5yclqmg94qpifzfbzzn9yjj3wnikzr"; depends=[]; broken = true; }; MAQCsubsetAFX = derive2 { name="MAQCsubsetAFX"; version="1.30.0"; sha256="14mwg96g7aza81vc3hpmb41scmygl8vnsi6s8p48c8v92106asmb"; depends=[affy Biobase]; broken = true; }; MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.13.0"; sha256="1jzypgfmd6d0fdj9ycp4jwihjpxyinr5kwi2x2dg2z6hvxx97gb8"; depends=[]; broken = true; }; + brainImageRdata = derive2 { name="brainImageRdata"; version="1.12.0"; sha256="072x7yn1ambf6hfpir6qdxl8bybv64blpbi1jdp0bvqlk66zs7zv"; depends=[ExperimentHub]; broken = true; }; + synapterdata = derive2 { name="synapterdata"; version="1.31.0"; sha256="03bdx8a1hrnlbcfq92d2yrjydw978pifbgr257r55p15khkigl86"; depends=[]; broken = true; }; + tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="1.12.0"; sha256="1kmh4iyh2h7vc1mlwb3sridn4nwkqdschz5md5dk53mxkn2wxcmi"; depends=[bsseq ExperimentHub knitr]; broken = true; }; } diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix index 15089b4cb43..1e614d58a4e 100644 --- a/pkgs/development/r-modules/bioc-packages.nix +++ b/pkgs/development/r-modules/bioc-packages.nix @@ -4,2063 +4,2129 @@ # Rscript generate-r-packages.R bioc >new && mv new bioc-packages.nix { self, derive }: -let derive2 = derive { biocVersion = "3.14"; }; +let derive2 = derive { biocVersion = "3.15"; }; in with self; { - ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.24.0"; sha256="1sp3f72rzlr822dxx42bswynrwwfx6f520hdhfdikqp13p2y4044"; depends=[ABAData data_table GOfuncR gplots gtools Rcpp]; }; - ABSSeq = derive2 { name="ABSSeq"; version="1.48.0"; sha256="0l2hh6qv4lhw1g1kciw2f3ssj3lw83hqxnkmxzmv7snik3k6i650"; depends=[limma locfit]; }; - ABarray = derive2 { name="ABarray"; version="1.62.0"; sha256="0yh7jmkwdg3kmm98ii0cxbla3s5bwy84fpg6xcpggsrriwzwfb5k"; depends=[Biobase multtest]; }; - ACE = derive2 { name="ACE"; version="1.12.0"; sha256="1nkbxldn5ba4fzfh4skwjc37gm6apwp09vzwnj2jw3b7ivmr0yr6"; depends=[Biobase GenomicRanges ggplot2 QDNAseq]; }; - ACME = derive2 { name="ACME"; version="2.50.0"; sha256="0h4bqbbqcwc938q7lysk5l35f64xz9d1bsniv2wshmlr4rr0zpcg"; depends=[Biobase BiocGenerics]; }; - ADAM = derive2 { name="ADAM"; version="1.10.0"; sha256="18zwci0ab54q7rdwj0n63w0i14lfrb4cccp09bcrq10gl1ki07f5"; depends=[dplyr DT GO_db KEGGREST knitr pbapply Rcpp stringr SummarizedExperiment]; }; - ADAMgui = derive2 { name="ADAMgui"; version="1.10.0"; sha256="0n06bb9djigha0249lxx84pn9q0xiryxbv25qsc3p2h46iaxi3wq"; depends=[ADAM colorRamps data_table dplyr DT ggplot2 ggpubr ggrepel ggsignif GO_db gridExtra knitr RColorBrewer reshape2 shiny shinyjs stringi stringr testthat varhandle]; }; - ADImpute = derive2 { name="ADImpute"; version="1.4.0"; sha256="1bkq1hd8sqg9r28r70a9vd3gb2nsmg6dybf002d621p88cdfjib2"; depends=[BiocParallel checkmate data_table DrImpute kernlab MASS Matrix rsvd S4Vectors SAVER SingleCellExperiment SummarizedExperiment]; }; - ADaCGH2 = derive2 { name="ADaCGH2"; version="2.34.0"; sha256="0a01wds33i2h2whigznbrxq38irlxm20qpwix33x6vlxbjgrckal"; depends=[aCGH bit cluster DNAcopy ff GLAD snapCGH tilingArray waveslim]; }; - AGDEX = derive2 { name="AGDEX"; version="1.42.0"; sha256="0y0q4zdybr5hlsi7qy2hf6c2sqr2z2211wz36dz70jkqyr0ggw64"; depends=[Biobase GSEABase]; }; - AIMS = derive2 { name="AIMS"; version="1.26.0"; sha256="1jsvyddv4cy3a53agprqkpfv1a7p384d462675k73dh8paid90nq"; depends=[Biobase e1071]; }; - ALDEx2 = derive2 { name="ALDEx2"; version="1.26.0"; sha256="1k57ifczqj47r8v2m08kmqr4vsrc5vsh7zs18vspvd6xd0qd03xf"; depends=[BiocParallel GenomicRanges IRanges multtest Rfast S4Vectors SummarizedExperiment zCompositions]; }; - AMARETTO = derive2 { name="AMARETTO"; version="1.10.0"; sha256="1arjh3n5wcm3ss4czfqd2m8nipy264vixvv5kij8ifqsgsipsx0p"; depends=[BiocFileCache callr circlize ComplexHeatmap curatedTCGAData doParallel dplyr DT foreach ggplot2 glmnet gridExtra httr impute knitr limma Matrix matrixStats MultiAssayExperiment Rcpp readr reshape2 rmarkdown tibble]; }; - AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.20.0"; sha256="1gsngb14qskgzbs4d45bh283lpiqpbrns04k1jzdhlg71344307x"; depends=[]; }; - ANCOMBC = derive2 { name="ANCOMBC"; version="1.4.0"; sha256="113rgy2wdypzppcd1pvng9b433bhb6nmhp79k56sr92l26i6nn4h"; depends=[MASS microbiome nloptr phyloseq Rdpack]; }; - ANF = derive2 { name="ANF"; version="1.16.0"; sha256="19irzhi7ph29vyq6d7jm8i5nf7bavxsn0nasl56l1h5xlzc9iak7"; depends=[Biobase igraph MASS RColorBrewer survival]; }; - APAlyzer = derive2 { name="APAlyzer"; version="1.8.0"; sha256="027bz9r88k3cqvjap2x2prg9qbi57n21p85ffrf0cnd1ivap2zqw"; depends=[DESeq2 dplyr ensembldb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel repmis Rsamtools Rsubread rtracklayer SummarizedExperiment tidyr VariantAnnotation]; }; - ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.34.0"; sha256="1ryqr3mpakjml0jhbk28k2z511sdl87wxdczxq1rwx98s0pc9mnh"; depends=[ARRmData]; }; - ASAFE = derive2 { name="ASAFE"; version="1.20.0"; sha256="0g93zg8drg2sgkn6z1rri9aas4vyi3wn9yfq4pz92500s1zz1wxx"; depends=[]; }; - ASEB = derive2 { name="ASEB"; version="1.38.0"; sha256="15jdibzp9z1qcspcybg4r0agjslbqqab96b5scfh3xk71blif1r6"; depends=[]; }; - ASGSCA = derive2 { name="ASGSCA"; version="1.28.0"; sha256="03h604c5n4lz8dj2irmlfigk6lsip8f8x9app7xq21vjwcwqjhiz"; depends=[MASS Matrix]; }; - ASICS = derive2 { name="ASICS"; version="2.10.0"; sha256="18g9kvzvf91kj2a7xj0i9h2gg1vh0gz5109d3ri8cpgid8bdp24x"; depends=[BiocParallel ggplot2 glmnet gridExtra Matrix mvtnorm PepsNMR plyr quadprog ropls SummarizedExperiment zoo]; }; - ASSET = derive2 { name="ASSET"; version="2.12.0"; sha256="0zni27hl583bi2pzip2v2469cv5rdzkpnqnyx81j9a1gzgg2swyn"; depends=[MASS msm rmeta]; }; - ASSIGN = derive2 { name="ASSIGN"; version="1.30.0"; sha256="0j8kvn5pq29wqjdcsq6smawdvxb7ccam3m5z223mkwww24m92qyw"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; - ASpediaFI = derive2 { name="ASpediaFI"; version="1.8.0"; sha256="0q33ir3chlix9qvw9drjrwzckk5s1vkj7gfdsffrslxsyl0nizx7"; depends=[BiocParallel biomaRt dplyr DRaWR e1071 fgsea GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz igraph IRanges IVAS limma Matrix mGSZ reshape2 ROCR Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; - ASpli = derive2 { name="ASpli"; version="2.4.0"; sha256="0548p8k3a379qqw7d80rbc7hm1g9bx4vmadxm0gmjph9akx56f3h"; depends=[AnnotationDbi BiocGenerics BiocStyle data_table DT edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz htmltools igraph IRanges limma MASS pbmcapply Rsamtools S4Vectors tidyr UpSetR]; }; - ATACseqQC = derive2 { name="ATACseqQC"; version="1.18.1"; sha256="1jmlialnhs9df1hv6l4qk2c4qjyjbz9mdj8vr52ms8vlxlxplz6c"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno edgeR GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; - AUCell = derive2 { name="AUCell"; version="1.16.0"; sha256="1lclf8hkhrm6g5fp8yhvjxnwgf8p0j9ffxsmcybz4rjvmwkiz5dp"; depends=[BiocGenerics data_table GSEABase mixtools R_utils S4Vectors shiny SummarizedExperiment]; }; - AWFisher = derive2 { name="AWFisher"; version="1.8.0"; sha256="1i9niknq2bnhwjdvl4f5hmdhg0p5vn9p6b6bb8fanfsijq0cn37p"; depends=[edgeR limma]; }; - AffiXcan = derive2 { name="AffiXcan"; version="1.12.0"; sha256="06yn87briv2141jqad934gg5rcd90w5nghrgmbhqnmwafn72gj9d"; depends=[BiocParallel crayon MultiAssayExperiment SummarizedExperiment]; }; - AffyCompatible = derive2 { name="AffyCompatible"; version="1.54.0"; sha256="1qlfh1gcwa6akd5dhdqh260yaw1j6dap6a15ghwf74rchi5218sg"; depends=[Biostrings RCurl XML]; }; - AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.40.0"; sha256="00hzr62xn1i1w4g8krsxhivzwn8hd7hwhkdxyrpz6cs9vgr4x9kd"; depends=[affy]; }; - AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.44.0"; sha256="05m9lr9qxyzp965lryrsbhjb2wadq47pwz9crwmd3ml9pfk25m6p"; depends=[affy affycoretools Biobase limma preprocessCore]; }; - AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.32.0"; sha256="1s6arjd0nxgxyqy7vhqcb78k0ss7vwrhv41pm346hs1nyr5dkzaq"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; - AlphaBeta = derive2 { name="AlphaBeta"; version="1.8.0"; sha256="0ya3dqvdf8iyd5bscc9lc476vkc7kamiqgjvxhxl4ay5j4vn02nr"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; }; - AlpsNMR = derive2 { name="AlpsNMR"; version="3.4.0"; sha256="0h8y9hi97zbv3qzjskxh81qjarmwx2w790kpspljgxa214f58fzv"; depends=[assertthat baseline BiocParallel dplyr fs furrr future GGally ggplot2 ggrepel glue htmltools magrittr matrixStats mixOmics pcaPP plyr purrr readxl reshape2 rlang rmarkdown S4Vectors signal speaq stringr SummarizedExperiment tibble tidyr tidyselect vctrs writexl zip]; }; - AnVIL = derive2 { name="AnVIL"; version="1.6.7"; sha256="0sy3338vg6g9rsc8ixh1l51xkjcyzxk2mcdw7xxxi6bpcg3zhqv9"; depends=[BiocManager dplyr futile_logger httr jsonlite rapiclient rlang tibble tidyr tidyselect]; }; - AnVILBilling = derive2 { name="AnVILBilling"; version="1.4.0"; sha256="0pg5r6qn18i91z2ixapdkranaacv9z8ljmdb33vdn2dqwv2w85b1"; depends=[bigrquery DBI dplyr DT ggplot2 lubridate magrittr plotly shiny shinytoastr]; }; - AnVILPublish = derive2 { name="AnVILPublish"; version="1.4.1"; sha256="0jvh22kz9mg4r49mbzvbvzbn58lzj5mvk7qb4pizn4sd8xsbvmyq"; depends=[AnVIL httr jsonlite readr rmarkdown whisker yaml]; }; - Anaquin = derive2 { name="Anaquin"; version="2.18.0"; sha256="0b9clpqy2jfhign30nab1369xswrkmqm6dx14mf6wjrvcl9xpm2s"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; - AneuFinder = derive2 { name="AneuFinder"; version="1.22.0"; sha256="0xn8952fkchhx7m8dam6gjy86j551xp1cs67510s1qrmfgzpkjp0"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; }; - AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.56.2"; sha256="01zwq14msbbwzxv8rgpmyr74ymvhq0vnmxkxxwd886iac5vjlgi8"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; }; - AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.18.0"; sha256="15fp1228yb06jm5cblvhw3qv9mlpbjfggaz2nvi3p46mby1vs64w"; depends=[GenomicRanges lazyeval]; }; - AnnotationForge = derive2 { name="AnnotationForge"; version="1.36.0"; sha256="02wvni5q560idi6677g5f4md73z4qzjl5yycxv5dbvgbl2picisz"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; - AnnotationHub = derive2 { name="AnnotationHub"; version="3.2.2"; sha256="08dk4h07gpi3rk9s80wrbx2ww2chj688qzbwlx8n4dz788lqbfz8"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; }; - AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.24.2"; sha256="00n195xbja01r64mjsjvk3xpwx9mwj5x8n4l810jspf4cdjv5cbl"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocCheck BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges jsonlite OrganismDbi RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; - ArrayExpress = derive2 { name="ArrayExpress"; version="1.54.0"; sha256="1rfvycrjlw0x1sqjrmiyf8i7yjiwjqf8x83i7pfg78yg9k5sh9vi"; depends=[Biobase limma oligo XML]; }; - ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.44.0"; sha256="1mjnddy05y06bn25xcjdx8kz538z3k4gvyqrb1lg4z8593xaw40i"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer Rhtslib rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; - AssessORF = derive2 { name="AssessORF"; version="1.12.0"; sha256="0rn2ijnpa8a6w2zv3cvm1s5bhcvzmb4xk18d96wjc60gxk51i5wy"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; - BAC = derive2 { name="BAC"; version="1.54.0"; sha256="1xplpx3r34l3h43a4zgv9s5z4sw61vlq828gqwc7f0i73a2jbck3"; depends=[]; }; - BADER = derive2 { name="BADER"; version="1.32.0"; sha256="1ngi4nrw0gfz7k4x1c5harl6a9bxfv8m7f1smxs5awnwr0jnv9pa"; depends=[]; }; - BAGS = derive2 { name="BAGS"; version="2.34.0"; sha256="0lkg4c4ay20bhas9lr6aifxhw0yhh999v6d1kbbplw4hhd1b93ha"; depends=[Biobase breastCancerVDX]; }; - BANDITS = derive2 { name="BANDITS"; version="1.10.0"; sha256="0c6a6hkm381xdlzx7mndzqsnxrmrkd0h7nh04w5rmnbk0g6psfi5"; depends=[BiocParallel data_table doParallel doRNG DRIMSeq foreach ggplot2 MASS R_utils Rcpp RcppArmadillo]; }; - BASiCS = derive2 { name="BASiCS"; version="2.6.0"; sha256="0nn4l94qnz0z19rav3agvwiq0726rmazpjpga4832p83lqg2ab1d"; depends=[assertthat Biobase BiocGenerics BiocParallel coda cowplot ggExtra ggplot2 hexbin MASS Matrix matrixStats Rcpp RcppArmadillo reshape2 S4Vectors scran scuttle SingleCellExperiment SummarizedExperiment viridis]; }; - BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.24.0"; sha256="1h4s5341jfmcvad83idlj1d1nhqapagx5jnvp9lv1p4df8gf38b4"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; - BCRANK = derive2 { name="BCRANK"; version="1.56.0"; sha256="01lzqs6zzag4s9aa409rd57qk0wfxmnrlryc28cy0yiv2bl8g7dz"; depends=[Biostrings]; }; - BDMMAcorrect = derive2 { name="BDMMAcorrect"; version="1.12.0"; sha256="1nppwmqlhrl61rwh1n5b9nr5q5lc0ny8dj6pfdcqx5lkvaphzssb"; depends=[ape ellipse ggplot2 Rcpp RcppArmadillo RcppEigen SummarizedExperiment vegan]; }; - BEARscc = derive2 { name="BEARscc"; version="1.14.0"; sha256="0n408rbpyjap0np2ih6svqkiq9g14rgbc0d52x3gv7x8xp5n7ckz"; depends=[data_table ggplot2 SingleCellExperiment]; }; - BEAT = derive2 { name="BEAT"; version="1.32.0"; sha256="0ah1fzjdb67925lkr23fk7i016mhwqd6i5zw40bnnzr9w9wk7gb5"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; - BEclear = derive2 { name="BEclear"; version="2.10.0"; sha256="1njb1lfd4wmsrfw06jc8z8vdk14nmcw9lwyvbxr7z1zg4h8v6c29"; depends=[abind BiocParallel data_table futile_logger Matrix outliers Rcpp Rdpack]; }; - BGmix = derive2 { name="BGmix"; version="1.54.0"; sha256="0x1sx319yfxgkscr9r62msq00ddvmzryzn42wy4dh5pvjmgifkkn"; depends=[KernSmooth]; }; - BHC = derive2 { name="BHC"; version="1.46.0"; sha256="09nw4ljc9sn7iw09ha0m614hmdjj193xhhav5x5p07l501kks6h2"; depends=[]; }; - BLMA = derive2 { name="BLMA"; version="1.18.0"; sha256="1ipycmm0kwxdxxff8gc611rf6ki3fw03d26v93y0i287ylim2yj1"; depends=[Biobase graph GSA limma metafor PADOG ROntoTools]; }; - BPRMeth = derive2 { name="BPRMeth"; version="1.20.0"; sha256="1x9lasyfpbvcpk4w4g921zwmf2qjc695l2vphjb2k5pw5sakcgkc"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; - BRAIN = derive2 { name="BRAIN"; version="1.40.0"; sha256="117a4vxn3bf80gckyc93vcn285gihdwyd94zj7gdl3008ynmg6ir"; depends=[Biostrings lattice PolynomF]; }; - BRGenomics = derive2 { name="BRGenomics"; version="1.6.0"; sha256="05mqxsk2sjzv9vwwxv8mb9ahlis8rlx4kl0jhsh62fnivbmfny6w"; depends=[DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - BSgenome = derive2 { name="BSgenome"; version="1.62.0"; sha256="1b023dpy8ygq0kd6qy0mk97c66gzpf39y2s0n89kmv61z5sg0jyi"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges matrixStats Rsamtools rtracklayer S4Vectors XVector]; }; - BUMHMM = derive2 { name="BUMHMM"; version="1.18.0"; sha256="0p5an5xc1l0kprgr5dxvqcq8p6spsk2fxf5xh3z05s0qrpx435bv"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; - BUS = derive2 { name="BUS"; version="1.50.0"; sha256="181b830s7ikfz8x7wsw1myjsz706baiz7a350mz7db014hpfx51v"; depends=[infotheo minet]; }; - BUScorrect = derive2 { name="BUScorrect"; version="1.12.0"; sha256="09px9d0ylrjdq1hina7d68w9rr7wnq2vbsvc7syj0hr77dw6lmz8"; depends=[gplots SummarizedExperiment]; }; - BUSpaRse = derive2 { name="BUSpaRse"; version="1.8.0"; sha256="1619clhaqkm4x21plkf41hazbkd5y3a65ab0idpgxy1c03l11hnj"; depends=[AnnotationDbi AnnotationFilter BH BiocGenerics biomaRt Biostrings BSgenome dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr Matrix plyranges Rcpp RcppArmadillo RcppProgress S4Vectors stringr tibble tidyr zeallot]; }; - BUSseq = derive2 { name="BUSseq"; version="1.0.0"; sha256="1v6rllmgxsc4rl5a9bwsvg92mm5dad5hw9lvrfdh8599hp09fm3z"; depends=[gplots S4Vectors SingleCellExperiment SummarizedExperiment]; }; - BaalChIP = derive2 { name="BaalChIP"; version="1.20.0"; sha256="1ys2gk2mvfr30lfydbixq8ycrqnbag0ib36kkzhhsmz0yr2a9cly"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; - BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.22.0"; sha256="10w6vh53qhaq8ap8jmpdj3rbcnkhp18jgik4c0z6zyazpaz5rghq"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; - BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.38.0"; sha256="0j05xisdqivv4sj100yx2xz5mqy3yax2yd483xfd3vx9llabl8wl"; depends=[RCurl RJSONIO]; }; - Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.30.0"; sha256="14in26rwd1rfq9amp2pxjxm119g2vxy73ylnm0sdjm9ih4wclpim"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; - BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.22.0"; sha256="14rs6fk15w2rddyqppf32n0c02gw83b7c8cpmsx11xz6fx7ib5k6"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; - BatchQC = derive2 { name="BatchQC"; version="1.22.0"; sha256="0rbpvgxzikpyhxbxksg7vwmy2r0gzw103dykx1awbxkkvrkhl7kf"; depends=[corpcor ggvis gplots heatmaply knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; - BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.20.0"; sha256="08sy0vv1mrbjvvf3ddgxc0ixrbi2mka2g8gjxmx3ylsb6w7vxcy4"; depends=[Biobase]; }; - BayesSpace = derive2 { name="BayesSpace"; version="1.4.1"; sha256="1nif6d4hb9zpfx9lczs6j6xniiv0spq6s39jvrs1qazdyysmf4qy"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; }; - BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.46.0"; sha256="004cppgdy79fqw2szkgkxir0rxvn91bmfrq4g20sdr7cvh8kpfyi"; depends=[]; }; - BgeeCall = derive2 { name="BgeeCall"; version="1.10.0"; sha256="0rbbl8m48qcvl26lnf27jq108p7pi84m9ac3qcpjc0ax5wywbv16"; depends=[biomaRt Biostrings data_table dplyr GenomicFeatures jsonlite rhdf5 rslurm rtracklayer sjmisc tximport]; }; - BgeeDB = derive2 { name="BgeeDB"; version="2.20.1"; sha256="0mrw7fwjx8k0a5c3iw2j94h1yn5pkvqil7fbzih9xiafnpbn374m"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; }; - BiFET = derive2 { name="BiFET"; version="1.14.0"; sha256="0vidypvphnj76g4ra5ijrgqx2dnzw0fmvdvz35gsqswrr3k20jkk"; depends=[GenomicRanges poibin]; }; - BiGGR = derive2 { name="BiGGR"; version="1.30.0"; sha256="1g01666wwznk148776s4vr1hfi3dfl448dhgk4d1qy2wv6sxh9kr"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; - BiRewire = derive2 { name="BiRewire"; version="3.26.5"; sha256="041i5d08bsc5jqx3309fixjacizs4yi992cwazxghm8mrk3kicbr"; depends=[igraph Matrix Rtsne slam]; }; - BiSeq = derive2 { name="BiSeq"; version="1.34.0"; sha256="05namdzj196rzjg3wqvamj3xpn039dbfhfpmc6p8ifxn9c9dnd3c"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; - BicARE = derive2 { name="BicARE"; version="1.52.0"; sha256="1g8vrsc05cysb36gsw8sfmr6dgbh4aji37vcq9qwkmkv3jgvnlf6"; depends=[Biobase GSEABase multtest]; }; - BindingSiteFinder = derive2 { name="BindingSiteFinder"; version="1.0.0"; sha256="0mvl2mh2px315ilfmf9ax5qjz3282l56qm1a0v142bb7cxld13v7"; depends=[GenomicRanges ggforce ggplot2 matrixStats rtracklayer S4Vectors tidyr]; }; - BioCor = derive2 { name="BioCor"; version="1.18.0"; sha256="0ii4g7438lb34ykidkbxw3v3k289k662rgbgayf9gak5avpkb2cq"; depends=[BiocParallel GSEABase Matrix]; }; - BioMM = derive2 { name="BioMM"; version="1.10.0"; sha256="1vrrfwfx4y7kaqc0pk1zmy7knpsg2n55pay3fhs0dig6v5zzdvz9"; depends=[BiocParallel CMplot e1071 ggplot2 glmnet imager lattice nsprcomp precrec ranger rms topGO vioplot xlsx]; }; - BioMVCClass = derive2 { name="BioMVCClass"; version="1.62.0"; sha256="0jqgazwz35gz11a7vzanyy2yalzalx0z0rw6y18nmk8dbv01nv2j"; depends=[Biobase graph MVCClass Rgraphviz]; }; - BioNERO = derive2 { name="BioNERO"; version="1.2.0"; sha256="0ddrzv1g46hvm52dzrcj5nbyyw9a16cqk8zg20wnkrh3qw1h4d9p"; depends=[BiocParallel ComplexHeatmap DESeq2 dynamicTreeCut GENIE3 ggnetwork ggnewscale ggplot2 ggpubr igraph intergraph matrixStats minet NetRep networkD3 RColorBrewer reshape2 SummarizedExperiment sva WGCNA]; }; - BioNet = derive2 { name="BioNet"; version="1.54.0"; sha256="05rj14jn4gn0hfn57amf19b8fqwkd3y2ji3mg7m1yg1w7n4qxqsg"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; - BioNetStat = derive2 { name="BioNetStat"; version="1.14.0"; sha256="13br8x4809hrr4ibz6iy5qjza9j6cazmkpvfikvw6bs588csxwf8"; depends=[BiocParallel DT ggplot2 Hmisc igraph knitr markdown pathview pheatmap plyr psych RColorBrewer RJSONIO rmarkdown shiny shinyBS whisker yaml]; }; - BioPlex = derive2 { name="BioPlex"; version="1.0.2"; sha256="0n9hz10nak8vws90g0xl21xcrj2gy769ra6xwjx6nj19giyk4749"; depends=[BiocFileCache GEOquery graph SummarizedExperiment]; }; - BioQC = derive2 { name="BioQC"; version="1.22.0"; sha256="190336qk0plg79gzvfn6wfplsi8nq0nj8508g7m0w3z6bdgwy407"; depends=[Biobase edgeR Rcpp]; }; - BioTIP = derive2 { name="BioTIP"; version="1.8.0"; sha256="0xmy5c4i9gf6d04gara6lbnnldqmzjaascb2pd2ih60jw2mvl4ys"; depends=[cluster GenomicRanges Hmisc igraph MASS psych stringr]; }; - Biobase = derive2 { name="Biobase"; version="2.54.0"; sha256="0kar2kgaayp5l7xv9zcxj61l01m8jlwnppql6qf01wsz36dacgww"; depends=[BiocGenerics]; }; - BiocCheck = derive2 { name="BiocCheck"; version="1.30.0"; sha256="0w9ddicyp9i8rxf92n9pghd9s6bb8jdjikaylrmkydhb7jbhan0y"; depends=[BiocManager biocViews codetools graph httr knitr optparse stringdist]; }; - BiocDockerManager = derive2 { name="BiocDockerManager"; version="1.6.0"; sha256="1kpdmpcngnl667bfffp9bkf8c31ipmhsncq0h9bf3a4k8b83pi0w"; depends=[dplyr httr memoise readr whisker]; }; - BiocFileCache = derive2 { name="BiocFileCache"; version="2.2.1"; sha256="0gaj0z6dk2p2vhvqz685xwd5q2mkvpimh2493p3w04s2rlsvi3jb"; depends=[curl DBI dbplyr dplyr filelock httr rappdirs RSQLite]; }; - BiocGenerics = derive2 { name="BiocGenerics"; version="0.40.0"; sha256="0nr5x4r8f2krnfrxm7wrzgzr7nbljypi985cbwx5hxhn95zmfifh"; depends=[]; }; - BiocIO = derive2 { name="BiocIO"; version="1.4.0"; sha256="1qg6v961sbj7qwyjx4z720f6h0kq693p7gc8q99my7gqkbbcxrfr"; depends=[BiocGenerics S4Vectors]; }; - BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.12.0"; sha256="04in8l6j7frgm0a5dzphazfhn9cm8w775z5yir712jxa37mh1agr"; depends=[BiocParallel Matrix Rcpp RcppHNSW S4Vectors]; }; - BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.14.0"; sha256="1h5s6wbc5n5x5d28rynxpcmaklxdhf72g9gg9fy8cg77niipvxd9"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; }; - BiocParallel = derive2 { name="BiocParallel"; version="1.28.3"; sha256="0lkp7m2l66zq8yl788mkvi9kpb1haywxpf6ip9xl5y6iwm1w2b8p"; depends=[BH futile_logger snow]; }; - BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.12.2"; sha256="1yz2sgx4xrnw22k3d6q6hkj213bnbb4hbr5ymxnmjnsz551s75ny"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rvest stringr tibble tidyr tidyselect xml2]; }; - BiocSet = derive2 { name="BiocSet"; version="1.8.1"; sha256="1x5ar9byr85iap2x6y66j31fi17wr31awx1gl3z01sckp0dldx6w"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; }; - BiocSingular = derive2 { name="BiocSingular"; version="1.10.0"; sha256="0dkh6a23qymjcynppmpp3k1mzpfadv8dqyz410pxkqsxig4ldd4n"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors ScaledMatrix]; }; - BiocSklearn = derive2 { name="BiocSklearn"; version="1.16.0"; sha256="0iscm2h4i7b50h4bfrrcafai14aq5wa5987awpzyk285gwifp6aw"; depends=[basilisk knitr Rcpp reticulate SummarizedExperiment]; }; - BiocStyle = derive2 { name="BiocStyle"; version="2.22.0"; sha256="0xx6xr01sb5wig94515zxgw24r9fv0g962ajy87741civhq32lbd"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; - BiocVersion = derive2 { name="BiocVersion"; version="3.14.0"; sha256="0qwzkh2alw7xhjprh719la0lg1q38pmjbipy3s2fy79m4xy8y8ik"; depends=[]; }; - BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.20.0"; sha256="1j9s8w5y8savcmh70npkanxacq1kipxnwk1wsiw5hwnp1p13ldaa"; depends=[BiocStyle bookdown git2r httr knitr rmarkdown rstudioapi stringr usethis]; }; - Biostrings = derive2 { name="Biostrings"; version="2.62.0"; sha256="11qkw863mkfz3mc55v2gmfr4w3xziqfb5pq3hmjqpn8vpw8ax3xq"; depends=[BiocGenerics crayon GenomeInfoDb IRanges S4Vectors XVector]; }; - BitSeq = derive2 { name="BitSeq"; version="1.38.0"; sha256="0pjhmxf6w8jk7rscr73bpfcgdb5ghm3ygiv9v9zwja4klw0xs444"; depends=[IRanges Rhtslib Rsamtools S4Vectors]; }; - BloodGen3Module = derive2 { name="BloodGen3Module"; version="1.2.0"; sha256="0a4xrr13ilw7m7zbsg4ghckd63aw1sx5np79hl5by7g06059r8a4"; depends=[circlize ComplexHeatmap ExperimentHub ggplot2 gtools limma matrixStats preprocessCore randomcoloR reshape2 SummarizedExperiment testthat V8]; }; - BrainSABER = derive2 { name="BrainSABER"; version="1.4.0"; sha256="0r4kv85badg42gfqx4dmg05d12fib2l3s52baixwsll87zppd4kr"; depends=[BiocFileCache biomaRt data_table lsa S4Vectors shiny SummarizedExperiment]; }; - BridgeDbR = derive2 { name="BridgeDbR"; version="2.4.0"; sha256="0wb03ggiq070f6g9y91icc6plyjx16xwl30hz6f4y19k7mc7k54r"; depends=[curl rJava]; }; - BrowserViz = derive2 { name="BrowserViz"; version="2.16.0"; sha256="097rpcz05hr9h8gzwyhcb4vy57lyswpy7dsg5a746n3zm6v46by6"; depends=[BiocGenerics httpuv jsonlite]; }; - BubbleTree = derive2 { name="BubbleTree"; version="2.24.0"; sha256="14v92dkk0smavsfsbpr4xa5rzyjp0yp0gvsgk4v93dnfb5mngwdr"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; - BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.58.0"; sha256="13qq4vwf9ajnx7n4kxhcxbvq599yzrdjifwrqmc8kqip7hiy2dkl"; depends=[]; }; - BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.58.0"; sha256="02h0flir0bwki819jl4c4dnh8svw8n32y9fn1p9kakm911gzg125"; depends=[BufferedMatrix]; }; - BumpyMatrix = derive2 { name="BumpyMatrix"; version="1.2.0"; sha256="1i67h00admg2yz8c5g8mck0iqdyddy9vnhgy6wdfm070qmicx2g0"; depends=[IRanges Matrix S4Vectors]; }; - CAEN = derive2 { name="CAEN"; version="1.2.0"; sha256="0jxi9bgbb3dnhcgm93qx611bnl23s7lk9msmxqbnlyhjprmbsqnz"; depends=[PoiClaClu SummarizedExperiment]; }; - CAFE = derive2 { name="CAFE"; version="1.30.0"; sha256="130jidd1jxlgkv3sq8bgqyrn51dhb9yf67dlnjhf7xbvlyvx179g"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; - CAGEfightR = derive2 { name="CAGEfightR"; version="1.14.0"; sha256="08v16d9al8l7a31sncwpi79i7770v5gr2bf2q7i07xxdsf496yr9"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; }; - CAGEr = derive2 { name="CAGEr"; version="2.0.2"; sha256="0s959bqgmafc2hwh42fwildq8h8wxvdiciimgpr71ka2p1vg9sk7"; depends=[BiocGenerics BiocParallel BSgenome data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; - CAMERA = derive2 { name="CAMERA"; version="1.50.0"; sha256="1mgdmzlbj8yhk6jmnqaw4xmss77v7csdajd240kiswvm1f317z3h"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; - CARNIVAL = derive2 { name="CARNIVAL"; version="2.4.0"; sha256="10wbdjripgndfaqx2aysmqhc9v8i94db8bf0bb89csmvmnia68c6"; depends=[dplyr igraph lpSolve readr rjson rmarkdown stringr]; }; - CATALYST = derive2 { name="CATALYST"; version="1.18.1"; sha256="0dvcs7nz1yawcrsf9lqiwdcrvjmbs8ajrmvj0ji4qq2a86n3dkg0"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra magrittr Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; - CAnD = derive2 { name="CAnD"; version="1.26.0"; sha256="19c47m0i8sfp2frw6mnzr1bz3n196kgd53bisil6nix1pqsgjqba"; depends=[ggplot2 reshape]; }; - CCPROMISE = derive2 { name="CCPROMISE"; version="1.20.0"; sha256="0wkwgm85kkf7p3vwjvsaq6p7cb2qfzjfqcaba2wgkh8lzjjrglw9"; depends=[Biobase CCP GSEABase PROMISE]; }; - CEMiTool = derive2 { name="CEMiTool"; version="1.18.1"; sha256="0w2y7wkz9r75jblh5mvx096lxlsbx8hn0jp85sfqhnq6ngvil99a"; depends=[clusterProfiler data_table dplyr DT fastcluster fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; - CFAssay = derive2 { name="CFAssay"; version="1.28.0"; sha256="1d38qqfj8dsvgqmwa2krffmvhg12h86jiml8w14my5bfsq1yikli"; depends=[]; }; - CGEN = derive2 { name="CGEN"; version="3.30.0"; sha256="1j1swi2c8wscq022fsjj8f1nqqfbgwpv2jm4dg3djd7zdvp71718"; depends=[mvtnorm survival]; }; - CGHbase = derive2 { name="CGHbase"; version="1.54.0"; sha256="1kfxw126bddfy67cmf8dca9qq4bg7fkxjf8iaikplhvs5hl7bp4d"; depends=[Biobase marray]; }; - CGHcall = derive2 { name="CGHcall"; version="2.56.0"; sha256="1r4y8zakgmdbnpwgp14kwh4iwqgqcmjq2yg4nc7j37p09bw1c8zr"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; - CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.48.0"; sha256="1zz4iaxyf5b03xalq58idnkrwcpsvh8zlz6hlxz487caw7c8xx6p"; depends=[Biobase CGHbase CGHcall]; }; - CGHregions = derive2 { name="CGHregions"; version="1.52.0"; sha256="1g337b6fjmbbkpn9pw20z6bvacrlfh582n6lss3qw0s6x6w5cygs"; depends=[Biobase CGHbase]; }; - CHRONOS = derive2 { name="CHRONOS"; version="1.22.0"; sha256="18fdvbdbl0rms1fs27yi6lvf3xnn3pjfm1qngaaz4c06v207mg9w"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl rJava XML]; }; - CIMICE = derive2 { name="CIMICE"; version="1.2.1"; sha256="1np9wp7phlhvhk58v853iz55i5jhkc75kw5xnyz8zjc30gb5nz9k"; depends=[assertthat dplyr expm ggcorrplot ggplot2 ggraph glue igraph maftools Matrix networkD3 purrr tidygraph tidyr visNetwork]; }; - CINdex = derive2 { name="CINdex"; version="1.22.0"; sha256="0a73rdhmsprbbq69yvnnhgp86wic255yxrj82k1i1k62f3bsi74c"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; - CMA = derive2 { name="CMA"; version="1.52.0"; sha256="09w0wj2mars83rfws8k6fpfgkbyp7fw97zfcf6d8lbsza639f3cm"; depends=[Biobase]; }; - CNAnorm = derive2 { name="CNAnorm"; version="1.40.0"; sha256="0nrkqycsssrrsf8h2w2wgi4lfyjlqakjx1iacb754pp2jfsr2nl2"; depends=[DNAcopy]; }; - CNEr = derive2 { name="CNEr"; version="1.30.0"; sha256="0w4iqmyyhsb6l9bi8c6qwdh4j6z2i1i5fi85ia9069fpl9d0hpl2"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; - CNORdt = derive2 { name="CNORdt"; version="1.36.0"; sha256="0hw6axs0q22q2amh3v1l5sx60a9spcj9a8y2p6y76p6630zw8l2g"; depends=[abind CellNOptR]; }; - CNORfeeder = derive2 { name="CNORfeeder"; version="1.34.0"; sha256="0qgg6gii5m7vcyfykj1a1cra93nr6d1hvaiw1y051rdd4xsvjnwj"; depends=[CellNOptR graph]; }; - CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.36.0"; sha256="0f7n5ib0smcxxcs38qq0s5m8z1bd13rnmhlwzg5wqgf5ymy7k9m1"; depends=[CellNOptR nloptr]; }; - CNORode = derive2 { name="CNORode"; version="1.36.0"; sha256="11l8lw4i8n71ki2fl218wpf7imsxpamxx9abj2axwi467cziq55x"; depends=[CellNOptR genalg]; }; - CNTools = derive2 { name="CNTools"; version="1.50.0"; sha256="198mvxz8zm32mvnq825iivzc8z1ff187g40kb867ck4svn1mysf6"; depends=[genefilter]; }; - CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.26.0"; sha256="0v4abknw96zrvir2g676kh81l5jhbxwb10xymzcn1bk3l9vknnpm"; depends=[BiocGenerics exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; - CNVRanger = derive2 { name="CNVRanger"; version="1.10.3"; sha256="0z7gps8nv7diphgk3nbc2gcdhjd7mbqcmjhassa9vg3nh9848m0a"; depends=[BiocGenerics BiocParallel data_table edgeR GDSArray gdsfmt GenomeInfoDb GenomicRanges IRanges lattice limma plyr qqman RaggedExperiment rappdirs reshape2 S4Vectors SNPRelate SummarizedExperiment]; }; - CNVfilteR = derive2 { name="CNVfilteR"; version="1.8.0"; sha256="0ap1k0aikfynwbynwd19l2nkj48d9h86smm7vrrfr1chrmglv84k"; depends=[assertthat Biostrings CopyNumberPlots GenomeInfoDb GenomicRanges IRanges karyoploteR pracma regioneR Rsamtools SummarizedExperiment VariantAnnotation]; }; - CNVgears = derive2 { name="CNVgears"; version="1.2.0"; sha256="1vswa2vyxknykims3cgwhbx9v0cw5978639bpgf7d7mwk63h6k6c"; depends=[data_table ggplot2]; }; - CNViz = derive2 { name="CNViz"; version="1.2.0"; sha256="08273c1jwrxcg4xyh6z7aqsy0sgk4ds8jzg8d8dxwscpfjjdbdcp"; depends=[CopyNumberPlots dplyr DT GenomicRanges karyoploteR magrittr plotly scales shiny]; }; - CNVrd2 = derive2 { name="CNVrd2"; version="1.32.0"; sha256="0kbncmpb8fmfciw5bjl7ng4cxzxl6ihjssg1zsdzkkiq4cxi9x1m"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; - COCOA = derive2 { name="COCOA"; version="2.8.0"; sha256="10ij138g73pd56cxbvf4384xbvv9zija3rs7dpz82n80gwavbm87"; depends=[Biobase BiocGenerics ComplexHeatmap data_table fitdistrplus GenomicRanges ggplot2 IRanges MIRA S4Vectors simpleCache tidyr]; }; - CODEX = derive2 { name="CODEX"; version="1.26.0"; sha256="1mafncizgyff8gv1asxcrcv4y5chcfabg8payp4dlmixbxkdy971"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; - COHCAP = derive2 { name="COHCAP"; version="1.40.0"; sha256="0sz3haz6caqlgjzadmpfwbjk5qin7f7jh4ysm0zyga6wpvym6gmz"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; - COMPASS = derive2 { name="COMPASS"; version="1.32.0"; sha256="16ijdi9axr0kr68mk881w2qiih44771312pribxzwsnvs4nvkahc"; depends=[abind BiocStyle clue coda data_table dplyr foreach knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; - CONFESS = derive2 { name="CONFESS"; version="1.22.0"; sha256="00mrmxlhf58vas7syr72w9nki4zq8xw0f2zfhw9l0lx59z06yhwz"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; - CONSTANd = derive2 { name="CONSTANd"; version="1.2.0"; sha256="0i0fqzmxcx8gpyd2i1i9ma69qm57r1pj15jir37wh1jgjgqjk1rf"; depends=[]; }; - CORREP = derive2 { name="CORREP"; version="1.60.0"; sha256="0vhhs19bsdg9f2qjmmqyrxfwh0fd54y3m6fkz6anf3mvbs5zqyiw"; depends=[e1071]; }; - COSNet = derive2 { name="COSNet"; version="1.28.0"; sha256="06pzkyarm2fmiwj3s31svyciiwfi1x5yq2889vbqffbfpqfysa1f"; depends=[]; }; - CRISPRseek = derive2 { name="CRISPRseek"; version="1.34.0"; sha256="05dkhm8afbqa8zxgbxpz4vysj25p5wwi7jz21p3k5wp96w0zv7p7"; depends=[BiocGenerics Biostrings BSgenome data_table DelayedArray dplyr GenomeInfoDb GenomicRanges hash IRanges keras mltools reticulate rhdf5 S4Vectors seqinr XVector]; }; - CRImage = derive2 { name="CRImage"; version="1.42.0"; sha256="1r03i15rkz2j1g3z69m5p14vp7p2h9d1aikj2z4zvv661dk1gvqd"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; - CSAR = derive2 { name="CSAR"; version="1.46.0"; sha256="0xqs5ryxazq4naqknm4f2w6vlb4mkmcd5i6530dr5awml1rf458x"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - CSSP = derive2 { name="CSSP"; version="1.32.0"; sha256="06s5q9iq35lbmjw3x1vh5d0zxlwhkdfqa6hk3yl5l77hwwvbwfm4"; depends=[]; }; - CSSQ = derive2 { name="CSSQ"; version="1.6.0"; sha256="0f3aivrh7jazs67r78lgkqdmv8k06ny0pwvjnzxwn8zvf4mkbw0n"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - CTDquerier = derive2 { name="CTDquerier"; version="2.2.0"; sha256="0pkcxbvlik0mh8c551zaqbq1hzlaivr4icsqnqnfisgrj3z6i0vv"; depends=[BiocFileCache ggplot2 gridExtra igraph RCurl S4Vectors stringdist stringr]; }; - CancerInSilico = derive2 { name="CancerInSilico"; version="2.14.0"; sha256="16bsfi5alh0sa42bqigbdv9xs97yjfrrhxbpi16fx9ah55brgjbc"; depends=[BH Rcpp]; }; - CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.20.0"; sha256="0hr9883yfghnv7san896sivlryd5da911s7cyngk5xajlhlq1yn7"; depends=[cluster ConsensusClusterPlus iCluster impute limma NMF sigclust survival]; }; - Cardinal = derive2 { name="Cardinal"; version="2.12.0"; sha256="1mlc41jnqwb4dwpjlp4djif4wmbby03g0g1fz0f2lp6ava5axfzs"; depends=[Biobase BiocGenerics BiocParallel dplyr EBImage irlba lattice magrittr Matrix matter mclust nlme ProtGenerics S4Vectors signal sp viridisLite]; }; - Category = derive2 { name="Category"; version="2.60.0"; sha256="164zp4la9rqnp5vpn2y2p6plc5yxyk2kmn0z3d2flla54zc1b427"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; - CausalR = derive2 { name="CausalR"; version="1.26.0"; sha256="1q8xr6nl6ynnk2n6s1cljnl8r47b04my8k2j20sn87d13fkc6m3k"; depends=[igraph]; }; - CeTF = derive2 { name="CeTF"; version="1.6.0"; sha256="0927nf56lwpciczmap02n2bp007yf3yd10hndcp9kgn7y61pk5ym"; depends=[circlize clusterProfiler ComplexHeatmap DESeq2 dplyr GenomicTools GenomicTools_fileHandler GGally ggnetwork ggplot2 ggpubr ggrepel igraph Matrix network Rcpp RcppArmadillo RCy3 S4Vectors SummarizedExperiment]; }; - CellBarcode = derive2 { name="CellBarcode"; version="1.0.0"; sha256="19i37q7d1j8wgyyiaivss1adf203c9yjz3czvdam0d2g7bhvp0zd"; depends=[Biostrings Ckmeans_1d_dp data_table egg ggplot2 magrittr plyr Rcpp S4Vectors ShortRead stringr]; }; - CellBench = derive2 { name="CellBench"; version="1.10.0"; sha256="18f6by5i8avj3lx5h1k5c7mwwgnri22r4b0jkd56ry01iz2wci6x"; depends=[BiocFileCache BiocGenerics BiocParallel dplyr glue lubridate magrittr memoise purrr rappdirs rlang SingleCellExperiment tibble tidyr tidyselect]; }; - CellMapper = derive2 { name="CellMapper"; version="1.20.0"; sha256="11q6b6m4lq4bxq62lgyxb0qp4s1yzvzajn9g0hiy02zisz5k47cz"; depends=[S4Vectors]; }; - CellMixS = derive2 { name="CellMixS"; version="1.10.0"; sha256="032p10pnb81qrspsj5c1wiaw9vzqnhx6whd10ayz6d0am9ifjf9s"; depends=[BiocGenerics BiocNeighbors BiocParallel cowplot dplyr ggplot2 ggridges kSamples magrittr purrr scater SingleCellExperiment SummarizedExperiment tidyr viridis]; }; - CellNOptR = derive2 { name="CellNOptR"; version="1.40.0"; sha256="0bqcrpz3jqsn383b2jqhd7kmf860ywdm3qjhrf4nywpyc0j9f3iq"; depends=[ggplot2 graph hash igraph RBGL RCurl Rgraphviz stringi stringr XML]; }; - CellScore = derive2 { name="CellScore"; version="1.14.0"; sha256="17zs6y08z1l4s51ishb5cp2k70yc1cinh211r76mrdlpdp9rxx5c"; depends=[Biobase gplots lsa RColorBrewer squash]; }; - CellTrails = derive2 { name="CellTrails"; version="1.12.0"; sha256="0rwirbvrfn03xrc0jjiw24dg9c49wznckhjm9kibd10n135x6l4g"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; - CellaRepertorium = derive2 { name="CellaRepertorium"; version="1.4.0"; sha256="1gqr12dbm1g2gz4ixx3r8f9as7m5nd0vcj0k3hsk9njs938lfzk4"; depends=[BiocGenerics Biostrings dplyr forcats Matrix progress purrr Rcpp reshape2 rlang S4Vectors stringr tibble tidyr]; }; - CelliD = derive2 { name="CelliD"; version="1.2.1"; sha256="1q03kv0m8v7w2ycgln86xshr0c7v14hiw56szxljgby9p3bxz85g"; depends=[BiocParallel data_table fastmatch fgsea ggplot2 glue irlba Matrix matrixStats pbapply Rcpp RcppArmadillo reticulate Rtsne scater Seurat SingleCellExperiment stringr SummarizedExperiment tictoc umap]; }; - Cepo = derive2 { name="Cepo"; version="1.0.0"; sha256="091hbppf6jmsw7bh3m1xasf9vwh4xf6m6sgqrqi8hvvp37vb7k67"; depends=[BiocParallel DelayedArray DelayedMatrixStats ggplot2 GSEABase HDF5Array patchwork reshape2 rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; - CexoR = derive2 { name="CexoR"; version="1.32.0"; sha256="18x5qj2z4nxbgj0i7si0rk57hlqwxmmz97dvsfvbkw1akcw8psb9"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; - ChAMP = derive2 { name="ChAMP"; version="2.24.0"; sha256="10wyfcc36qfcwpzgsj2vnmjy694igk81zd35aij51fs4s1mhmf2k"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel DT GenomicRanges ggplot2 globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; - ChIC = derive2 { name="ChIC"; version="1.14.0"; sha256="0dd2qm6ab46yq7l4ai3q2bqsnb2kmg6la4lyf1wz3pbvrpfhb5py"; depends=[BiocGenerics caret caTools ChIC_data genomeIntervals GenomicRanges IRanges progress randomForest Rsamtools S4Vectors spp]; }; - ChIPComp = derive2 { name="ChIPComp"; version="1.24.0"; sha256="1wdy92y5l3wa3zgg59w69rd7gdwf4z1waa4i2cccniccz463p1xq"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; - ChIPQC = derive2 { name="ChIPQC"; version="1.30.0"; sha256="1vzrdlli9702m69qipj7gxbjvbycbr7s09gh4jas6apycprg9jw3"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; - ChIPXpress = derive2 { name="ChIPXpress"; version="1.38.0"; sha256="1wypkh9pq3v9lwmhwdrnf6a2jm2i2nc7kv9nppcyknf9qhpkn97z"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; - ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.16.0"; sha256="1ibbfsl2gz5634rljy4bin9h9g5bxzig3z65bvayp4ldmfiz91dm"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RcppRoll ROCR rtracklayer S4Vectors]; }; - ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.18.0"; sha256="1hh3mhfcngyx7cpzns8mjqviy8vfzrvxpv6nyizflpfmsr39mxfk"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; - ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.28.1"; sha256="0v2qz3rp5lmj3s1ziahjqym6cjlh4wdvf050k1x6dx8404jhi8kw"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI dplyr ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 graph InteractionSet IRanges KEGGREST matrixStats multtest RBGL regioneR Rsamtools rtracklayer S4Vectors SummarizedExperiment VennDiagram]; }; - ChIPseeker = derive2 { name="ChIPseeker"; version="1.30.3"; sha256="1f9m1p1viiigkmv15r2mknjrfw047jw1fylpqz5ipigc3jrphj1g"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; - ChIPseqR = derive2 { name="ChIPseqR"; version="1.48.0"; sha256="05hxxqmjxpry0j80kyz2400azni0dc64ps7cxfi11h243japhbsf"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; - ChIPsim = derive2 { name="ChIPsim"; version="1.48.0"; sha256="1pdsfsk8c92pz22qz2x5rsmk7j9v3dw9c1p96il533ycjafq1xqd"; depends=[Biostrings IRanges ShortRead XVector]; }; - ChemmineOB = derive2 { name="ChemmineOB"; version="1.32.0"; sha256="14zwckgg8wqcdjmdk3i8p7f82df4izipq2lfck98l4i0z2p3y0f3"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; - ChemmineR = derive2 { name="ChemmineR"; version="3.46.0"; sha256="069xd7if7fs69afmamgl6wrkzpnk97ic6z5ix4vvlzkb078dm0p8"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra jsonlite png Rcpp RCurl rjson rsvg stringi]; }; - Chicago = derive2 { name="Chicago"; version="1.22.0"; sha256="0nz9v37p7zl8yw3ykdbsb3izcwgx349wvrhwfyyn9h3jxjfafngn"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; - ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.48.0"; sha256="08wvxxk59zfaclxzbmdm0bld586f76571qqh0jb0dgqw7cg6p0lf"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; - ChromSCape = derive2 { name="ChromSCape"; version="1.4.0"; sha256="1cpbbzm3lhp1qmirj3j1f2crrbfwap6krrvqshv742qgc1wsg7xb"; depends=[batchelor BiocParallel colorRamps colourpicker ConsensusClusterPlus coop DelayedArray dplyr DT edgeR forcats fs GenomicRanges ggplot2 IRanges irlba jsonlite kableExtra Matrix matrixTests msigdbr plotly qs qualV Rcpp rlist Rsamtools rtracklayer Rtsne S4Vectors scater scran shiny shinycssloaders shinydashboard shinydashboardPlus shinyFiles shinyhelper shinyjs shinyWidgets SingleCellExperiment stringdist SummarizedExperiment Sushi tibble tidyr umap viridis]; }; - CiteFuse = derive2 { name="CiteFuse"; version="1.6.0"; sha256="09bkzccl4ncbrcblr6harih2s2y69r6237hvwxlq7yfz1im9sj46"; depends=[cowplot dbscan ggplot2 ggraph ggridges gridExtra igraph Matrix mixtools pheatmap propr randomForest reshape2 rhdf5 rlang Rtsne S4Vectors scales scran SingleCellExperiment SummarizedExperiment uwot]; }; - ClassifyR = derive2 { name="ClassifyR"; version="2.14.0"; sha256="18syv3r0wm6w1pmab8pgnc83sx7rafjvbn3v4889mhii09x6kk53"; depends=[BiocParallel locfit MultiAssayExperiment plyr S4Vectors]; }; - Clomial = derive2 { name="Clomial"; version="1.30.0"; sha256="0d2vqxd2xyis5wrjb3apss262wriijqi95arga4aj1d8x523zr17"; depends=[matrixStats permute]; }; - Clonality = derive2 { name="Clonality"; version="1.42.0"; sha256="17560pvdykdvzfqnb3i1qqnlvrsd2ahan6ar8ys49y3p9xrjrd4i"; depends=[DNAcopy]; }; - CluMSID = derive2 { name="CluMSID"; version="1.10.0"; sha256="14vv63b9nlii3hhgzyl4mqnxln85rw1m8cb37ilrg1yg2swmvv97"; depends=[ape Biobase dbscan GGally ggplot2 gplots MSnbase mzR network plotly RColorBrewer S4Vectors sna]; }; - ClusterJudge = derive2 { name="ClusterJudge"; version="1.16.0"; sha256="0dpmf5s4gxv8vn33xrinmhwbgn4417zdqysv9pqhdzjqxwxcn6qv"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; - ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.22.0"; sha256="0kfq4s84b54f9hjhix0f9w3bn12a9s253n1k4aj30s4hjzcy180d"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; - CoCiteStats = derive2 { name="CoCiteStats"; version="1.66.0"; sha256="1di153w94mqq03w6l2pri6zsv67x8h5z5xnswwxbyz3693902m82"; depends=[AnnotationDbi org_Hs_eg_db]; }; - CoGAPS = derive2 { name="CoGAPS"; version="3.14.0"; sha256="1ykp7jmnc32j2s0gf0l1xpk5kpfwqffq2526l8vjqia67zacgmdd"; depends=[BH BiocParallel cluster gplots RColorBrewer Rcpp rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - CoRegNet = derive2 { name="CoRegNet"; version="1.32.0"; sha256="1nwx7mdlqncswfilwpxplpfmy2lkdhq1d8p23jw1dd194w346y7l"; depends=[arules igraph shiny]; }; - Cogito = derive2 { name="Cogito"; version="1.0.0"; sha256="0chzlwlv0sjyd4m52m9w4y79lpmc6xrlj29l2kyv3kj1qzwqgfdg"; depends=[AnnotationDbi BiocManager entropy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 jsonlite magrittr rmarkdown S4Vectors TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - ComPrAn = derive2 { name="ComPrAn"; version="1.2.0"; sha256="0sqy9118gg0hicdi15idi65g95ni67zwpq9frbdp6jyz4564i2np"; depends=[data_table dplyr DT forcats ggplot2 magrittr purrr RColorBrewer rio rlang scales shiny shinydashboard shinyjs stringr tibble tidyr VennDiagram]; }; - ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="2.10.0"; sha256="124w74mk0zk035wyr7cimblzx5blags4n5c8f83mp7iimxcb4gcn"; depends=[circlize clue colorspace digest doParallel foreach GetoptLong GlobalOptions IRanges matrixStats png RColorBrewer]; }; - ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.58.0"; sha256="13z43qbk9z7mvy8v8k185m6n020i6ahb18pm4q88rs75qlklzdkr"; depends=[ALL Biobase cluster]; }; - CopyNumberPlots = derive2 { name="CopyNumberPlots"; version="1.10.0"; sha256="02zp86818c0n4wjwsw4xpcw5nxvdjpijg9gczmrr87jzkd6lwf8x"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges karyoploteR regioneR rhdf5 Rsamtools SummarizedExperiment VariantAnnotation]; }; - CopywriteR = derive2 { name="CopywriteR"; version="2.26.0"; sha256="0xm5gjzi4r1xzyn7r669blqxhyhmbk9rh9k2gn696j14hbhc1hcy"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; - CoreGx = derive2 { name="CoreGx"; version="1.6.0"; sha256="12825lplihp10wvvg90gkk96vabvycfi32kpbs2garbzcjshqygh"; depends=[Biobase BiocGenerics BiocParallel BumpyMatrix checkmate crayon data_table glue lsa MatrixGenerics MultiAssayExperiment piano rlang S4Vectors SummarizedExperiment]; }; - Cormotif = derive2 { name="Cormotif"; version="1.40.0"; sha256="1dzsnfgrgjgjk9a1jbsjfarcjvxnvswph495lcaiw8fh5mibf9qb"; depends=[affy limma]; }; - CoverageView = derive2 { name="CoverageView"; version="1.32.0"; sha256="0sb1h5qsk41c9xisq73agqh502wv6p2j1k45s32a4bkdynf696as"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; - CrispRVariants = derive2 { name="CrispRVariants"; version="1.22.0"; sha256="0jvrsc0fz8li8v6xigvkq514x0pirnbrp7lgvjqxxj8i3l7y536i"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; - CyTOFpower = derive2 { name="CyTOFpower"; version="1.0.0"; sha256="1h2dmnkjv62ws7ljixq1nj50hnqk3r70xhzkh159cjkirf9r4xwn"; depends=[CytoGLMM diffcyt dplyr DT ggplot2 magrittr rlang shiny shinyFeedback shinyjs shinyMatrix SummarizedExperiment tibble tidyr]; }; - CytoDx = derive2 { name="CytoDx"; version="1.14.0"; sha256="1wrfcmg0prz5qywalrzyql08aw2rglkz14fn6j670av40yblskhv"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; - CytoGLMM = derive2 { name="CytoGLMM"; version="1.2.0"; sha256="0q5d86kx16nlsckp3zmh6j1irn0l8y40lx17pp99n32mzi9b7c02"; depends=[BiocParallel caret cowplot doParallel dplyr factoextra flexmix ggplot2 ggrepel logging magrittr MASS Matrix mbest pheatmap RColorBrewer rlang speedglm stringr strucchange tibble tidyr]; }; - CytoML = derive2 { name="CytoML"; version="2.6.0"; sha256="16rgsc2dz5b8lm3ma8nh9wiknrdnvfjcsij7809rmcfs0gn1arcz"; depends=[base64enc BH Biobase corpcor cytolib data_table dplyr flowCore flowWorkspace ggcyto graph jsonlite lattice openCyto plyr RBGL Rcpp RcppArmadillo RcppParallel Rgraphviz Rhdf5lib RProtoBufLib RUnit tibble XML xml2 yaml]; }; - CytoTree = derive2 { name="CytoTree"; version="1.4.0"; sha256="1k5jynyzafi7fn8qmnsl7r86p56z0lv4n95v3mg3mvql7l2q26gd"; depends=[Biobase BiocNeighbors cluster destiny flowCore FlowSOM flowUtils ggplot2 gmodels igraph limma Matrix matrixStats mclust pheatmap prettydoc RANN Rcpp Rtsne scatterpie scatterplot3d stringr sva umap]; }; - DAMEfinder = derive2 { name="DAMEfinder"; version="1.6.0"; sha256="0g47m8ac1rgllhfcbss0200m5jcrasns15x03db601m1jy37mcj8"; depends=[BiocGenerics Biostrings bumphunter cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma plyr readr reshape2 Rsamtools S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; - DAPAR = derive2 { name="DAPAR"; version="1.26.1"; sha256="1xkilz7smw6q4d0v9z13787h771ks454ma7bism9mm1rn0zdzw4n"; depends=[AnnotationDbi apcluster Biobase Cairo cluster clusterProfiler cp4p DAPARdata dendextend diptest doParallel dplyr factoextra FactoMineR forcats foreach ggplot2 gplots graph highcharter igraph imp4p impute knitr lattice limma lme4 Matrix Mfuzz MSnbase multcomp norm openxlsx pcaMethods png preprocessCore purrr RColorBrewer readxl reshape2 scales siggenes stringr tibble tidyr tidyverse tmvtnorm vioplot visNetwork vsn]; }; - DART = derive2 { name="DART"; version="1.42.0"; sha256="1wxg3szgsqy33z4vp150w5kg2nxyxqs3az5vxbajz5z9q7fg3zrb"; depends=[igraph]; }; - DECIPHER = derive2 { name="DECIPHER"; version="2.22.0"; sha256="0a9k3f70jmd17kxf1zjmdzrfjs0dmwfad2zgz6wihxh5s1shc8qm"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; - DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.14.0"; sha256="0qbmw70rqmfixrbnb2jzvvqi54j2rl6gy1bspb143gsadh8z2s9i"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; }; - DEFormats = derive2 { name="DEFormats"; version="1.22.0"; sha256="0c9ajkrjzw3rdnfnjj7xn9pdsykdzn230mi01138srrkvcpra856"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; - DEGraph = derive2 { name="DEGraph"; version="1.46.0"; sha256="1p8zzx8vbzhxnpvd7cbr4g1r87lys41cx4n60rkx53c0pqlnabsn"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; - DEGreport = derive2 { name="DEGreport"; version="1.30.3"; sha256="08g0ldj4867jsw2h1368pcirvcbdz5w9pbz3pgyxjg9mdbnllaka"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr lasso2 logging magrittr Nozzle_R1 psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; - DEGseq = derive2 { name="DEGseq"; version="1.48.0"; sha256="1bx6xj71k7126ckpr1b7dh1ndmb9yvp9wrrr8lyfcq5birgpf22n"; depends=[qvalue]; }; - DEP = derive2 { name="DEP"; version="1.16.0"; sha256="122gxaslxl3q66ncqndkmnjf6kx2gkj880cf2khwivh58sg6y410"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; - DEScan2 = derive2 { name="DEScan2"; version="1.14.1"; sha256="017pxb1z1vflxcqbhc1vrdxw146rb50zgxzalpmh0njzc333v3j1"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; - DESeq2 = derive2 { name="DESeq2"; version="1.34.0"; sha256="0whk29zrmv9mrlc4w5ghy0fd29v8hfr8jccwgrn59mf3mkmfb2b9"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; - DEWSeq = derive2 { name="DEWSeq"; version="1.8.0"; sha256="1ggj4in0sj9wb367s19v56f0jnfdcsylndjwpp4j02kwmc2wfl0j"; depends=[BiocGenerics BiocParallel data_table DESeq2 GenomeInfoDb GenomicRanges R_utils S4Vectors SummarizedExperiment]; }; - DEXSeq = derive2 { name="DEXSeq"; version="1.40.0"; sha256="1wd4bjd0a53s689yvb2lxzdiy0synh6ncfcly3cfw37kpdj8lds1"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; - DEqMS = derive2 { name="DEqMS"; version="1.12.1"; sha256="07klzl8qb121c3jk7g16fx4g5a89m8iv8mjhqcc7f4501bpbkyb2"; depends=[ggplot2 limma matrixStats]; }; - DEsingle = derive2 { name="DEsingle"; version="1.14.0"; sha256="0x0xnylf036k320r59pqa273i59jcwxiwsw4fyfqqrliyw7fxa4c"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; - DEsubs = derive2 { name="DEsubs"; version="1.20.0"; sha256="1b11hhs7r1r24z7w9mimj1bpj7y5j7i9vq9sw6ll2dlghyazc7di"; depends=[circlize DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; }; - DExMA = derive2 { name="DExMA"; version="1.2.1"; sha256="1afxv356bkswnbyh3mkf98xqq1arcgak980hkryn4i69531kkc0w"; depends=[Biobase bnstruct DExMAdata GEOquery impute limma pheatmap plyr scales snpStats sva swamp]; }; - DFP = derive2 { name="DFP"; version="1.52.0"; sha256="1b3h4zsqp75ac6zq8yc73pila8khb57hlh5yj9md8kgxqcg4b447"; depends=[Biobase]; }; - DIAlignR = derive2 { name="DIAlignR"; version="2.2.0"; sha256="1py41l19brb2z7iv1fj9jkw213pn5aqwiq47bz4iha4jb42rdn64"; depends=[ape bit64 data_table DBI dplyr ggplot2 magrittr mzR phangorn pracma Rcpp RcppEigen reticulate rlang RMSNumpress RSQLite signal tidyr zoo]; }; - DMCFB = derive2 { name="DMCFB"; version="1.8.0"; sha256="03mg620cpn13avvd962akmjgd2d0ph7b7zgb22zcidsfk8q9znmh"; depends=[arm benchmarkme BiocParallel data_table fastDummies GenomicRanges IRanges MASS matrixStats rtracklayer S4Vectors speedglm SummarizedExperiment tibble]; }; - DMCHMM = derive2 { name="DMCHMM"; version="1.16.0"; sha256="0r12m3ldbi1h0fdg4hgxfq1f0lrz49a08i7kr6imdspzm8hl2j65"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; - DMRScan = derive2 { name="DMRScan"; version="1.16.0"; sha256="0iza3yyjmggkxgn24raiwzppf4lvdj1lgq34lpk08mf6p5v0v601"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; - DMRcaller = derive2 { name="DMRcaller"; version="1.26.0"; sha256="0qn3y2nj0pyy9kqpbv8nwsiypwl6kixxs2yj3bvhkhb5dgqj6p6w"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; - DMRcate = derive2 { name="DMRcate"; version="2.8.5"; sha256="1346s2z1lj57asil8zmapv5fsgmywsn7q0qdskpfzm05rd4h91ny"; depends=[bsseq DSS edgeR ExperimentHub GenomeInfoDb GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors SummarizedExperiment]; }; - DMRforPairs = derive2 { name="DMRforPairs"; version="1.30.0"; sha256="1f8b63chg3jrqbf669l2nk3a8wy5rya545zbypgzr2r51s284k7b"; depends=[GenomicRanges Gviz R2HTML]; }; - DNABarcodeCompatibility = derive2 { name="DNABarcodeCompatibility"; version="1.10.0"; sha256="1dj4c8h648ckzrz0k6qrzvfgqz00wj0pdahhp35nlrldcavp90p6"; depends=[DNABarcodes dplyr numbers purrr stringr tidyr]; }; - DNABarcodes = derive2 { name="DNABarcodes"; version="1.24.0"; sha256="07yaz98r18mjny1ilmfnjxcra7xpklnd183pw0kasvsri01ccwxg"; depends=[BH Matrix Rcpp]; }; - DNAcopy = derive2 { name="DNAcopy"; version="1.68.0"; sha256="19ax431i97r49gh1232vf8mgmkvc6k26lnq44j3g10n6q01czswm"; depends=[]; }; - DNAshapeR = derive2 { name="DNAshapeR"; version="1.22.0"; sha256="1ypkp03ciia9hj4hhh9dlkx4hsrivph2y3irxhyqn7wjgh6fmnnl"; depends=[Biostrings fields GenomicRanges Rcpp]; }; - DOSE = derive2 { name="DOSE"; version="3.20.1"; sha256="10kknaqz40pb6v0fcjzp12hfpi6k5kvlqnyxx1k3y0h0wdg8hs3n"; depends=[AnnotationDbi BiocParallel DO_db fgsea ggplot2 GOSemSim qvalue reshape2]; }; - DRIMSeq = derive2 { name="DRIMSeq"; version="1.22.0"; sha256="0y2jb0hb633id038zmwnfny6h4ai77fdyy02f77vha1z8xg5nl02"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; - DSS = derive2 { name="DSS"; version="2.42.0"; sha256="1a6igpkics6lyv7cqcg4iakxrwk928ha7xv7yvn0j2yi9h2akqmi"; depends=[Biobase BiocParallel bsseq DelayedArray]; }; - DTA = derive2 { name="DTA"; version="2.40.0"; sha256="195pmjs1yhlw241ha0v8jpd1fwmgd6pp6s8bhbhjinkwplinw2g1"; depends=[LSD scatterplot3d]; }; - DaMiRseq = derive2 { name="DaMiRseq"; version="2.6.0"; sha256="0wzbfa28f97hqgrp2514fpk8d3w0yxj0j5llpnvy19b7z0fxr43i"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel plyr randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; - DeMAND = derive2 { name="DeMAND"; version="1.24.0"; sha256="15k9m8rkrs7mhi07f26d6600k5aymrz19fdsg8078n3155bgl6mc"; depends=[KernSmooth]; }; - DeMixT = derive2 { name="DeMixT"; version="1.10.0"; sha256="0x3kjcn0878w36rqd808ca1iicv4dki1f8066s3ry7806dhcxiln"; depends=[base64enc ggplot2 KernSmooth knitr matrixcalc matrixStats Rcpp rmarkdown SummarizedExperiment truncdist]; }; - DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.36.0"; sha256="1ax9lx5qg4k5c1mv35bhpfh9q8dbfbv4rf4y1vy994qxmnq4rwsv"; depends=[ggplot2 limSolve pcaMethods]; }; - DeepBlueR = derive2 { name="DeepBlueR"; version="1.20.0"; sha256="16sdsvmp54k6zj1xcxmq0pdpm91q9ff11p3c83ii30brshj69bhi"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; - DeepPINCS = derive2 { name="DeepPINCS"; version="1.2.2"; sha256="1daxagyhcf6ma4r504ypr4gpfjzrbmp1x57r0siccrpgqc1ds817"; depends=[CatEncoders keras matlab PRROC purrr rcdk reticulate stringdist tensorflow tokenizers ttgsea webchem]; }; - DegNorm = derive2 { name="DegNorm"; version="1.4.0"; sha256="0f3vpynm5g83lpja5xg9nvpssyj6lh5cw9syg242j3mlrjim9bif"; depends=[data_table doParallel foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges plotly plyr Rcpp RcppArmadillo Rsamtools S4Vectors viridis]; }; - DelayedArray = derive2 { name="DelayedArray"; version="0.20.0"; sha256="1cm6zh01mvhiq7zrik7q3dmgxinyjz1nyg6rfj93kpkvcb5d4wpj"; depends=[BiocGenerics IRanges Matrix MatrixGenerics S4Vectors]; }; - DelayedDataFrame = derive2 { name="DelayedDataFrame"; version="1.10.0"; sha256="1vifbqka5k1rmimqcpl6218ragr9dq9rzxizx9nff5ilsva21f9b"; depends=[BiocGenerics DelayedArray S4Vectors]; }; - DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.16.0"; sha256="1pqwkk39rfhcnhmgchk0gfmm4jgasl19yq0nhhwsfj45y2vk6kjk"; depends=[DelayedArray IRanges Matrix MatrixGenerics matrixStats S4Vectors sparseMatrixStats]; }; - DelayedRandomArray = derive2 { name="DelayedRandomArray"; version="1.2.0"; sha256="1hi9pvxny8nm4akhshicksd04p7vflqa3m38k6kcs50slhgdp5ys"; depends=[BH DelayedArray dqrng Rcpp]; }; - DelayedTensor = derive2 { name="DelayedTensor"; version="1.0.0"; sha256="0yg7r6j7r1sikc4wi6khh3dsbflzpj51sdh41q337lkmlxagwpbb"; depends=[BiocSingular DelayedArray DelayedRandomArray einsum HDF5Array irlba Matrix rTensor]; }; - DepecheR = derive2 { name="DepecheR"; version="1.10.0"; sha256="1500jivij7zdycdd0i0b7mgp44w4z0hqnpzqbq8nhvzzdigic8x9"; depends=[beanplot doSNOW dplyr FNN foreach ggplot2 gmodels gplots MASS matrixStats mixOmics moments Rcpp RcppEigen reshape2 robustbase viridis]; }; - DiffBind = derive2 { name="DiffBind"; version="3.4.11"; sha256="1xprj3x3s3yh6fwsdcl4zgfbhn640422x1lhhrmvdr836jr8sxcj"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; }; - DiffLogo = derive2 { name="DiffLogo"; version="2.18.0"; sha256="1axpyjr86a176rgv9wnrk04dv9llgkw9vr7h00scr6jw77wqya4n"; depends=[cba]; }; - Dino = derive2 { name="Dino"; version="1.0.0"; sha256="1k83rhva7bxk1w6qvvdhx0r95p9nbzfdm3m7g6wpyq3qp0ifx5xp"; depends=[BiocParallel BiocSingular Matrix matrixStats S4Vectors scran Seurat SingleCellExperiment SummarizedExperiment]; }; - Director = derive2 { name="Director"; version="1.20.0"; sha256="1f0a8rkpz698c5a41j7ii7ahxxaqn92rhx8sh3q66gpv0br8h44g"; depends=[htmltools]; }; - DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.36.0"; sha256="06nallp9jj2vmaa7d18g6hiymjc109szdv8sp51r87n7s38bvyq6"; depends=[BiocGenerics IRanges S4Vectors]; }; - DiscoRhythm = derive2 { name="DiscoRhythm"; version="1.10.1"; sha256="0bb8fmswicjnffa0w5j2iyy484zjcvh1isxk7gkjxm9snxbglmz6"; depends=[BiocGenerics BiocStyle broom data_table dplyr DT ggExtra ggplot2 gridExtra heatmaply kableExtra knitr magick matrixStats matrixTests MetaCycle plotly reshape2 rmarkdown S4Vectors shiny shinyBS shinycssloaders shinydashboard shinyjs SummarizedExperiment UpSetR VennDiagram viridis zip]; }; - DominoEffect = derive2 { name="DominoEffect"; version="1.14.0"; sha256="13lksli177d11rw5692bc5qmp0x5bfkasriccaa28hklnqmbyjsc"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; - Doscheda = derive2 { name="Doscheda"; version="1.16.0"; sha256="0lpmxnid43fvi41mc5r89mvvxn19baja8f4zr38j3dkb126dr476"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; - DriverNet = derive2 { name="DriverNet"; version="1.34.0"; sha256="1qfjg5x3m2z5yjm0lgnw7rqhclic2fgzcdnq0nnwlqyp4i5na10q"; depends=[]; }; - DropletUtils = derive2 { name="DropletUtils"; version="1.14.2"; sha256="0vljd0zlafqr0g5d14jf8qwahjc56i7i1xan00ql351y8hmi4qmi"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR GenomicRanges HDF5Array IRanges Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; }; - DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.36.0"; sha256="19plcigawh4c4z1dxn1c0kxbdnrsz2fgfyvmcnj0025xscdk4zay"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; - Dune = derive2 { name="Dune"; version="1.6.0"; sha256="0n267fw1yna1fpg5gcilmf0ijavy2c1ry0wcccp2cdzhs77cx7fi"; depends=[aricode BiocParallel dplyr gganimate ggplot2 magrittr purrr RColorBrewer SummarizedExperiment tidyr]; }; - DynDoc = derive2 { name="DynDoc"; version="1.72.0"; sha256="1ix1kcjrmbv7hqsmihgazh7igrh13bxhgw36ibihh07sflrgf1hm"; depends=[]; }; - EBImage = derive2 { name="EBImage"; version="4.36.0"; sha256="030vpn55ppfqq4408c4db4w40d17x1yq6zajb11p2glikvm1q619"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; - EBSEA = derive2 { name="EBSEA"; version="1.22.0"; sha256="0vzbc8kx00ylyi3qiz92njnbpaqadnabf97kd9l6kzxj0z8mfig2"; depends=[DESeq2 EmpiricalBrownsMethod]; }; - EBSeq = derive2 { name="EBSeq"; version="1.34.0"; sha256="1p8i04v5h6mbc8zqbf3rifbwwylzzc1fqrkhh0a0mbcgq2nv7i9m"; depends=[blockmodeling gplots testthat]; }; - EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.28.0"; sha256="1q94fdaw9jaqvi3b3va80fgiinl0v58pyw8ja5mkm438yfmyzwhv"; depends=[EBSeq]; }; - EBarrays = derive2 { name="EBarrays"; version="2.58.0"; sha256="10dw6c93rmpknzf4cnhw3y7lb27q4xq7x7wirl2a7qywdj0yj2g6"; depends=[Biobase cluster lattice]; }; - EBcoexpress = derive2 { name="EBcoexpress"; version="1.38.0"; sha256="16l40i20ybkqjjvgifm4a0zini6jnrx3y5x6fj863kvxrh550hrb"; depends=[EBarrays mclust minqa]; }; - EDASeq = derive2 { name="EDASeq"; version="2.28.0"; sha256="1vygfdxbjcww7sqzc3j7sp7w13dx10vlzy9z31flf7345qp6blj7"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics BiocManager biomaRt Biostrings GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; - EGAD = derive2 { name="EGAD"; version="1.22.0"; sha256="1kr79qm5na04p0s31whd88zmrp9sy8qm1ypngpgxch628yf93l9a"; depends=[Biobase GEOquery gplots igraph impute limma MASS plyr RColorBrewer RCurl zoo]; }; - EGSEA = derive2 { name="EGSEA"; version="1.22.0"; sha256="17q0cjvkrqhmzcgvip4mkdz02aa9rm3svfv2s689fhz2kmwljca8"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; - ELMER = derive2 { name="ELMER"; version="2.18.0"; sha256="0kn5yr9yf49kcipjn4z7bcpzj74kcfkhb8q9cfnx659xnksfb27d"; depends=[biomaRt circlize ComplexHeatmap DelayedArray doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr progress purrr readr reshape reshape2 rmarkdown rtracklayer rvest S4Vectors scales stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; }; - EMDomics = derive2 { name="EMDomics"; version="2.24.0"; sha256="0rf83brhzdqsnwg3vlby0a4kf8khv2g7rmxkk31r44apkyspzapl"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; - ENmix = derive2 { name="ENmix"; version="1.30.03"; sha256="1mqfvvdrmwc4qcrb6826sq9yr244p3x6vrcw523ybcs0qvzw25yg"; depends=[AnnotationHub Biobase doParallel dynamicTreeCut ExperimentHub foreach genefilter geneplotter gplots gtools illuminaio impute IRanges matrixStats minfi preprocessCore quadprog RPMM S4Vectors SummarizedExperiment]; }; - ERSSA = derive2 { name="ERSSA"; version="1.12.0"; sha256="11lak418vmswi9mz4h97pxb68m7ihqbg6z93bvnakka65w997ki8"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; - EWCE = derive2 { name="EWCE"; version="1.2.0"; sha256="02kfcj2wldqfrkrlwss5k5vb5mgi37jrp2c3kx556k25xkzh19vq"; depends=[AnnotationHub biomaRt cowplot ewceData ExperimentHub future ggdendro ggplot2 gridExtra HGNChelper limma Matrix reshape2 RNOmni scales stringr SummarizedExperiment]; }; - EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.22.0"; sha256="0yra1mp1iz4rh6dvlxv0i0f1ibqgl9giz3r4csg5l0wxz60fbxzm"; depends=[]; }; - EnMCB = derive2 { name="EnMCB"; version="1.6.0"; sha256="050mzns1zh643pxzqzc935hwczpk7xwa16qq7z88cagab2r8yx7j"; depends=[boot doParallel foreach ggplot2 glmnet IlluminaHumanMethylation450kanno_ilmn12_hg19 mboost minfi rms survival survivalROC survivalsvm]; }; - EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.12.0"; sha256="19l1yz522hzmwwsgqqhwqrazqf6w015fi3j85n9pxqkyisz2r2x2"; depends=[ggalt ggplot2 ggrastr ggrepel]; }; - EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.24.0"; sha256="1wbbasz3467jg6anzm57y4kijsysfkah1l5f82qw6ckrhv3rxylc"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; - EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.24.2"; sha256="0b1pgmfvbb7qba447szjakxdp1v9f63gmkvfqdw4g89f0k2ra40q"; depends=[AnnotationDbi BiocFileCache BiocManager edgeR GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma pathview Rgraphviz S4Vectors safe SPIA SummarizedExperiment]; }; - EpiDISH = derive2 { name="EpiDISH"; version="2.10.0"; sha256="1fqyg3hfc40d1pvw02d95wr1lm2wi82yx3vrrsf7gs53i9gdm2q0"; depends=[e1071 locfdr MASS Matrix matrixStats quadprog stringr]; }; - EpiTxDb = derive2 { name="EpiTxDb"; version="1.6.0"; sha256="0vmn4wqxwczq0ckx0pq20jbjp3a01nxj3knax1d3jx77cqqkwsaz"; depends=[AnnotationDbi BiocFileCache BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges httr IRanges Modstrings RSQLite S4Vectors tRNAdbImport xml2]; }; - EventPointer = derive2 { name="EventPointer"; version="3.2.0"; sha256="0kg5psygc410gx6prb8as00csh6v3s1psbcn2ym4i4k5wnyzmbn3"; depends=[abind affxparser Biostrings BSgenome cobs doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges glmnet graph igraph IRanges iterators limma lpSolve MASS Matrix matrixStats nnls poibin prodlim qvalue RBGL rhdf5 S4Vectors SGSeq speedglm stringr SummarizedExperiment tximport]; }; - ExCluster = derive2 { name="ExCluster"; version="1.12.0"; sha256="1fmijpvkn2qjwl8cqzwclybnfqyrdckxwfc6f1zird770bqyagjv"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; - ExiMiR = derive2 { name="ExiMiR"; version="2.36.0"; sha256="1vf1241n6f0w7p8m8vwb30dlhybw5ddhp2bgwmn7ml6rfbkidmnk"; depends=[affy affyio Biobase limma preprocessCore]; }; - ExperimentHub = derive2 { name="ExperimentHub"; version="2.2.1"; sha256="0lvd6hyqdfsn5ji714v46qdrb8vr1y38lv0pgw8priab0hpqrbm5"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocManager curl rappdirs S4Vectors]; }; - ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.20.1"; sha256="12gnp7zh0ligpmgnd59gp6c3cdq9sz0nzzpskjkdf7kzn08mk41m"; depends=[AnnotationHubData BiocGenerics BiocManager curl DBI ExperimentHub httr S4Vectors]; }; - ExperimentSubset = derive2 { name="ExperimentSubset"; version="1.4.0"; sha256="1ccz555f5mfvii99w66f076cb22f0ksjxmq9f6bsfxjzsbc7ssnh"; depends=[Matrix S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment TreeSummarizedExperiment]; }; - ExploreModelMatrix = derive2 { name="ExploreModelMatrix"; version="1.6.0"; sha256="162g6zfdhr6gibyqkfwk4y2fd4wmbzwx1frf8rkw6m7ny3mc7s3g"; depends=[cowplot dplyr DT ggplot2 limma magrittr MASS rintrojs S4Vectors scales shiny shinydashboard shinyjs tibble tidyr]; }; - ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.22.0"; sha256="0y3gq8ffy527gnyhhqvwjd58a3df50b27d5fvnd37cjm36hk1sbr"; depends=[Biobase httr limma S4Vectors SummarizedExperiment XML xml2]; }; - FCBF = derive2 { name="FCBF"; version="2.2.0"; sha256="1yj8ngsm6sxph3wh14kkam8ndvxfrvfag04vp4ny7aqz2a16prdg"; depends=[ggplot2 gridExtra mclust pbapply SummarizedExperiment]; }; - FEAST = derive2 { name="FEAST"; version="1.2.0"; sha256="05ybk14np0r618whkf99w3n1zk39sz8mjdlcbrdixvphs4wafjpm"; depends=[BiocParallel irlba matrixStats mclust SC3 SingleCellExperiment SummarizedExperiment TSCAN]; }; - FELLA = derive2 { name="FELLA"; version="1.14.0"; sha256="0xs4qky42nz80qmbnb5b925ks76xxpa5mymvrcllzzhbyax2dddc"; depends=[igraph KEGGREST Matrix plyr]; }; - FGNet = derive2 { name="FGNet"; version="3.28.0"; sha256="0mz728i1ylbhwxb41xghrl7aaz5a3s3iaysi0hl7jjmiixvscp90"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; - FISHalyseR = derive2 { name="FISHalyseR"; version="1.28.0"; sha256="0z9wlk98xicc6bcyx11q25sxrfdiiwcx32bvp3l3xi5r99alwwlp"; depends=[abind EBImage]; }; - FLAMES = derive2 { name="FLAMES"; version="1.0.2"; sha256="025q9sfj3q5hgqncf61kfg90wlv7ddkqcnv1qgvsxy7cca7x1dyi"; depends=[basilisk dplyr magrittr Rcpp reticulate Rhtslib Rsamtools S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tidyr zlibbioc]; }; - FRASER = derive2 { name="FRASER"; version="1.6.0"; sha256="07xj7fznqmsc71j1s6h7g8jq8cg93hys3q20f7lja6l9032rl5rx"; depends=[AnnotationDbi BBmisc Biobase BiocGenerics BiocParallel biomaRt BSgenome cowplot data_table DelayedArray DelayedMatrixStats extraDistr generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HDF5Array IRanges matrixStats OUTRIDER pcaMethods pheatmap plotly PRROC R_utils RColorBrewer Rcpp RcppArmadillo rhdf5 Rsamtools Rsubread S4Vectors SummarizedExperiment tibble VGAM]; }; - FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.30.0"; sha256="1b69g11klf2av1an1h50vz6bkpkjg4v1a2mi9lj0bmwsi7kb7j32"; depends=[fda MASS]; }; - FScanR = derive2 { name="FScanR"; version="1.4.0"; sha256="1xsbf8vxck17s1shs2gxls02wzm3qr9wy8iwr8zqk9gsm5niax4z"; depends=[]; }; - FamAgg = derive2 { name="FamAgg"; version="1.22.0"; sha256="14lldajnl8ppy3nyy5mn987mvjfgr2vpx5zp6ky8md308rvgay0k"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; - FastqCleaner = derive2 { name="FastqCleaner"; version="1.12.0"; sha256="1cw0916qdn1an3wcnx5659q2f22rs78p9m5v2xp9nyp5phjb97pp"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; - FilterFFPE = derive2 { name="FilterFFPE"; version="1.4.0"; sha256="1c9mfhc4hms2f861f71i7hbhnn3s1xlzabcmdjzybwiv16dl139w"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; }; - FindIT2 = derive2 { name="FindIT2"; version="1.0.3"; sha256="0xgnsgpai7l7birivnpca0df74zh02q6l35dncz8i50x1yrf83hm"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; }; - FitHiC = derive2 { name="FitHiC"; version="1.20.0"; sha256="0a3d2bxp98lmbf3i864zgfwxwvxyqfcrh75z9yz7ra7y44pkjr4y"; depends=[data_table fdrtool Rcpp]; }; - FlowSOM = derive2 { name="FlowSOM"; version="2.2.0"; sha256="062xrv8li2z849qa8mv5dhafqli6ziz099ikjfvi7v2fr7174p8f"; depends=[BiocGenerics colorRamps ConsensusClusterPlus CytoML dplyr flowCore flowWorkspace ggforce ggnewscale ggplot2 ggpointdensity ggpubr ggrepel igraph magrittr pheatmap RColorBrewer rlang Rtsne scattermore tidyr XML]; }; - FoldGO = derive2 { name="FoldGO"; version="1.12.0"; sha256="07wk3i9q8m8jaamwfwnnxlm3xc0r7frlk6s2mndkkjs1sfrdb5z3"; depends=[ggplot2 tidyr topGO]; }; - FunChIP = derive2 { name="FunChIP"; version="1.20.0"; sha256="0mgc8jv11cfn5fqlmjnhb3kvf6rzvy5win8vwnk57qsdb2w3ahfh"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; - GA4GHclient = derive2 { name="GA4GHclient"; version="1.18.0"; sha256="1nc2707n5w5an60wqcya6jp0yj9cga0kc4ls9klkky8wyzf8apc8"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; - GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.16.0"; sha256="0yrrbml450hl5zi1jjwpsiwxv4fkypxkvrvvqcn6yml5vr85wwyv"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; - GAPGOM = derive2 { name="GAPGOM"; version="1.10.0"; sha256="1b18fq56f88ismi7k9i5r1li7mp6hb1hv234j87xidlwm1dxqsvl"; depends=[AnnotationDbi Biobase BiocFileCache data_table dplyr fastmatch GEOquery GO_db GOSemSim graph igraph magrittr Matrix matrixStats org_Hs_eg_db org_Mm_eg_db plyr RBGL]; }; - GARS = derive2 { name="GARS"; version="1.14.0"; sha256="0riypxvxqx9jclqcpg657giszmnvvpzjl7glinf0snjzppgxapv1"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; - GAprediction = derive2 { name="GAprediction"; version="1.20.0"; sha256="14a273pkvwcbhi1ymlbd63rn560pb0lx9hkl8fsxs1hixjy94zp1"; depends=[glmnet Matrix]; }; - GCSConnection = derive2 { name="GCSConnection"; version="1.6.0"; sha256="0hdywmm7f2va4vwd7pygb2l8a9ajf6pz74i05vmimhblkf9jbr69"; depends=[googleAuthR googleCloudStorageR httr jsonlite Rcpp]; }; - GCSFilesystem = derive2 { name="GCSFilesystem"; version="1.4.0"; sha256="0k2dmiyxfpdr1jzrkkkpj0rqd1s13rwmqfrbc5xkanc5z6wqd8hc"; depends=[]; }; - GCSscore = derive2 { name="GCSscore"; version="1.8.0"; sha256="0zb2fcwqbxl59bvhj73yrb9sq2zld451abb1nmxj92yipbmwjgn6"; depends=[affxparser Biobase BiocManager data_table devtools dplR RSQLite stringr]; }; - GDCRNATools = derive2 { name="GDCRNATools"; version="1.14.0"; sha256="1h0gfi6mhr5kzwhqxkzgxz12abkn7svnbbzga70pp7az8m8vxmnn"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; - GDSArray = derive2 { name="GDSArray"; version="1.14.1"; sha256="0v8kxy7xfhgghz4qg2djc4nxh2w3bk48b0cx1jx7lc45hm2qsdfx"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; - GEM = derive2 { name="GEM"; version="1.20.0"; sha256="19jars2vajfgy2v9xrgp45gc2yn2hq31d9ikdpnkd9gvpqm99nkv"; depends=[ggplot2]; }; - GENESIS = derive2 { name="GENESIS"; version="2.24.2"; sha256="13xjn9a0njpm6w0i2ikkjsp77ykdaigf5x5d39g6qqdj2rc2pz7w"; depends=[Biobase BiocGenerics BiocParallel data_table gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; - GENIE3 = derive2 { name="GENIE3"; version="1.16.0"; sha256="0ms769267pimrx3xwwkgjy03qilkxxs7xwhzfca01f65i4n3l6fw"; depends=[dplyr reshape2]; }; - GEOexplorer = derive2 { name="GEOexplorer"; version="1.0.0"; sha256="01hgjdp14b9r2044h0sd136f0px983n0il08wiii41vq1jgisvhb"; depends=[Biobase DT factoextra GEOquery ggplot2 heatmaply htmltools impute limma maptools pheatmap plotly scales shiny shinyBS shinybusy shinyHeatmaply stringr umap]; }; - GEOfastq = derive2 { name="GEOfastq"; version="1.2.0"; sha256="03ya7x7dph6g97aa3gf3d7dinjcy8qipd0dyxqpdhdm1w1gx83by"; depends=[doParallel foreach plyr RCurl rvest stringr xml2]; }; - GEOmetadb = derive2 { name="GEOmetadb"; version="1.56.0"; sha256="18v3h7518cc4fzdi7ivng81316012mry4ihyrldm85zgm4c5dign"; depends=[GEOquery RSQLite]; }; - GEOquery = derive2 { name="GEOquery"; version="2.62.2"; sha256="1hncr0p54qdg82a771yjjm4w1k2myrc26jzvci3g37mq7bgv3mxw"; depends=[Biobase data_table dplyr httr limma magrittr R_utils readr tidyr xml2]; }; - GEOsubmission = derive2 { name="GEOsubmission"; version="1.46.0"; sha256="0p0w55j7ij1242sa76bhgqwnj5zi0bh7s7qa14iga4ldigpxr63b"; depends=[affy Biobase]; }; - GEWIST = derive2 { name="GEWIST"; version="1.38.0"; sha256="0xcywidrs6jvps93iv3qvr9ai1bdzn95icvswy8ganx09v5hfpy9"; depends=[car]; }; - GGPA = derive2 { name="GGPA"; version="1.6.0"; sha256="0spiix8vlncrc2h1chmkfz8k79lpvq3qya33yyg7avf8dqdqaw31"; depends=[GGally matrixStats network Rcpp RcppArmadillo scales sna]; }; - GIGSEA = derive2 { name="GIGSEA"; version="1.12.0"; sha256="1mdxrrfh15784i5yh2hbdan6ppkw4v2p3fax6hxgpb9w4x2w16my"; depends=[locfdr MASS Matrix]; }; - GISPA = derive2 { name="GISPA"; version="1.18.0"; sha256="0v1ijbq6vc2pvchn37bp5pv1al4j2vsgsm2pb0kbsh3nd856zzsq"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; }; - GLAD = derive2 { name="GLAD"; version="2.58.0"; sha256="0hd7pf46i192w46zwaiphii2vws014dgwddwava6gxjiwk7fc5in"; depends=[aws]; }; - GMRP = derive2 { name="GMRP"; version="1.22.0"; sha256="1iz0nqhgl5r5q2s00mcqqiv21w11cddmc9jip64n6w78n3c4yxqv"; depends=[diagram GenomicRanges plotrix]; }; - GNET2 = derive2 { name="GNET2"; version="1.10.0"; sha256="0h2l232dyvgpsknk3gml7nqm654h0zwzkikhsjwk2awixmdm8nmc"; depends=[DiagrammeR dplyr ggplot2 igraph matrixStats Rcpp reshape2 SummarizedExperiment xgboost]; }; - GOSemSim = derive2 { name="GOSemSim"; version="2.20.0"; sha256="15qi69kkgah7g25bymk9q1xf16hp1rd040fglg0svnydylg2d0ab"; depends=[AnnotationDbi GO_db Rcpp]; }; - GOSim = derive2 { name="GOSim"; version="1.32.0"; sha256="1l5cxh2zbf0bkgs6xal2zvxlijxmnrjwjy2ajibxxmk3r210dcq4"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; - GOTHiC = derive2 { name="GOTHiC"; version="1.30.0"; sha256="12hhxcknm4svg5mym6d9d73yxmc5885jm3jl0k243iyp6103z7zy"; depends=[BiocGenerics BiocManager Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; - GOexpress = derive2 { name="GOexpress"; version="1.28.0"; sha256="1mv5bx2m2jhrshdr8p41aixbzi61n20p0nlmdjpcfqp0yz3rjqaw"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; - GOfuncR = derive2 { name="GOfuncR"; version="1.14.0"; sha256="08n1d03i4l2dl47axmrziiypi83yffndf0ww1b32skyjm2r0x127"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; - GOpro = derive2 { name="GOpro"; version="1.20.0"; sha256="0k5fc1bfmhf370y6w3wb5jivi7wg2wj8nmmh2g3zhnxvxr9vmpf8"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; - GOstats = derive2 { name="GOstats"; version="2.60.0"; sha256="1f8wqdl0swnvs59i6ljjcaglfqv314n8zxy4crpx806gbjzpn76z"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; - GOsummaries = derive2 { name="GOsummaries"; version="2.30.0"; sha256="1na3mhza11bprki6bxkrabhc0qadprvqs2ca5j00s4f53rwslx75"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; - GPA = derive2 { name="GPA"; version="1.6.0"; sha256="0i60bhc6h64wa701482xrqvzqzzh16mpd8rqhhaym5alyazxlwh9"; depends=[DT ggplot2 ggrepel plyr Rcpp shiny shinyBS vegan]; }; - GRENITS = derive2 { name="GRENITS"; version="1.46.0"; sha256="0yxf9z34234821lcbgz535d2mrs6cls2ds2mm5rz2p1vlgl0h38c"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; - GRmetrics = derive2 { name="GRmetrics"; version="1.20.0"; sha256="1ch990zs3gvczfwwwig48hyj6k2n5rkxlc4v5abi1c8cycm19hzm"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; - GRridge = derive2 { name="GRridge"; version="1.18.0"; sha256="1dv0mx8rga92rlpyscfg7pbmx7dfgj9m07dxgqcn7fq4gbif5mmk"; depends=[glmnet graph Iso mvtnorm penalized survival]; }; - GSALightning = derive2 { name="GSALightning"; version="1.22.0"; sha256="1321kkbcdmb1s0hbmj4idqy2sn3slam8knsri37nix10w8f0wd1y"; depends=[data_table Matrix]; }; - GSAR = derive2 { name="GSAR"; version="1.28.0"; sha256="1fc3mph18lfxjnjz2w0jpr4gjxqnp426sml6r235b76gyp5x8wgk"; depends=[igraph]; }; - GSCA = derive2 { name="GSCA"; version="2.24.0"; sha256="15czjsvxsdqirb81ffpkxhlj88z373mzrnbz3kg6f69bls0vlhj9"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; - GSEABase = derive2 { name="GSEABase"; version="1.56.0"; sha256="1i8rryvagxk2pd8nl4a6yldwv82yx869nvv95jf8v00bna08f4d6"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; - GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.14.0"; sha256="0k93wkafx5ifjilp8891ba5xd0ja14jvik7yjni1dmljwxb6g494"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO S4Vectors SummarizedExperiment]; }; - GSEAlm = derive2 { name="GSEAlm"; version="1.54.0"; sha256="0vvjcmajhc8s9sc13ps31lcyivdi2l12ywj7bs3viix9pibkcckv"; depends=[Biobase]; }; - GSEAmining = derive2 { name="GSEAmining"; version="1.4.0"; sha256="002ddzr5faqlp3505ddccvx34rihx0sqg4bp0zjcb1qfvn33410f"; depends=[dendextend dplyr ggplot2 ggwordcloud gridExtra rlang stringr tibble tidytext]; }; - GSRI = derive2 { name="GSRI"; version="2.42.0"; sha256="11g0a9cipm2wlnvppvkfqd7l3bm7jgvd7d9pn65pigrbhx6ginrq"; depends=[Biobase fdrtool genefilter GSEABase les]; }; - GSReg = derive2 { name="GSReg"; version="1.28.0"; sha256="1bkn7vak4dai5sckg0sy39yd092mi7ba8hfm673b54ip2zpj7zng"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; - GSVA = derive2 { name="GSVA"; version="1.42.0"; sha256="1z4qm00dby1jmy5awpr8r08k9vsxjdbzp1wqdjy2w0nc0v85314y"; depends=[Biobase BiocParallel BiocSingular DelayedArray DelayedMatrixStats GSEABase HDF5Array IRanges Matrix S4Vectors SingleCellExperiment sparseMatrixStats SummarizedExperiment]; }; - GSgalgoR = derive2 { name="GSgalgoR"; version="1.4.0"; sha256="1lr4c3qy8crba2x093l9ffbb4mj4mh92xz6wil3nrf8djr79x8rh"; depends=[cluster doParallel foreach matchingR nsga2R proxy survival]; }; - GUIDEseq = derive2 { name="GUIDEseq"; version="1.24.0"; sha256="1fpqgr1yjcb9nygl3fp9i6xn5hwjwqjqbqmwhs6qyxdklrsscxyg"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges hash IRanges limma matrixStats Rsamtools S4Vectors]; }; - GWAS_BAYES = derive2 { name="GWAS.BAYES"; version="1.4.0"; sha256="0xr1ygs4857qa1ck60syvi46wprhm468iavw7flfkn5p6k5q8xry"; depends=[caret doParallel GA ggplot2 Matrix memoise Rcpp RcppEigen reshape2]; }; - GWASTools = derive2 { name="GWASTools"; version="1.40.0"; sha256="1cnwnx513kjqdymjlm7qx9293w187xzb0s6z185x12x9pli9b7d9"; depends=[Biobase data_table DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; - GWENA = derive2 { name="GWENA"; version="1.4.0"; sha256="1b8g94gkywmhwr5padax7y8l6crzqbnzpqf7d8vyslim7419jy7b"; depends=[cluster dplyr dynamicTreeCut ggplot2 gprofiler2 igraph magrittr matrixStats NetRep purrr RColorBrewer rlist stringr SummarizedExperiment tibble tidyr WGCNA]; }; - GateFinder = derive2 { name="GateFinder"; version="1.14.0"; sha256="0kvfggjn0jxf6frr7z11xqgv7j3shgqdcjbq6szd9kph2933f3i6"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; - GenVisR = derive2 { name="GenVisR"; version="1.26.0"; sha256="02n40li1fi40qidd9g33swmicrwlr8wgaph9nz4kmzyvdwgdzg3d"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI FField GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; - GeneAccord = derive2 { name="GeneAccord"; version="1.12.0"; sha256="0yk5v15c6i9g6qbhn158484v8914x6jc4v8wqbxiard932wggip1"; depends=[biomaRt caTools dplyr ggplot2 ggpubr gtools magrittr maxLik RColorBrewer reshape2 tibble]; }; - GeneAnswers = derive2 { name="GeneAnswers"; version="2.36.0"; sha256="1f8q3hi913khyy1cc3yp2635gaik47alsqmhi0mi24cy340faplz"; depends=[annotate Biobase downloader Heatplus igraph KEGGREST MASS RBGL RColorBrewer RCurl RSQLite XML]; }; - GeneBreak = derive2 { name="GeneBreak"; version="1.24.0"; sha256="1zr73ayvfjr509a778vzggppd1m35jknkzqk0y4730sk755gx9c3"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; - GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.40.0"; sha256="1d35mqp1x4ajniyy7n8qv69nm31f0acy3lh9brwzkibsqd6n0jw5"; depends=[Biobase]; }; - GeneGA = derive2 { name="GeneGA"; version="1.44.0"; sha256="1d0igfgcvwiljsngaq3hmrzp03sgnj8ksrzaf8n2igpg1lz85b3n"; depends=[hash seqinr]; }; - GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.20.0"; sha256="0kbzp1fzygvv1wrknp5nb1cw9kxw7pm51m0m0bjcvqzqxn73g6ad"; depends=[data_table FactoMineR GenomicRanges igraph IRanges kernlab mvtnorm Rsamtools snpStats]; }; - GeneMeta = derive2 { name="GeneMeta"; version="1.66.0"; sha256="0dri85vr0dspzq0px2x2j3y5sn9rvbzk02xk0vnxzpkgqfghg7xv"; depends=[Biobase genefilter]; }; - GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.36.1"; sha256="0qw6ii1ca2rnznkhz9ffxdgfak39amp3w97970w6wyl1h15ax7lg"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; - GeneOverlap = derive2 { name="GeneOverlap"; version="1.30.0"; sha256="18l5dc4xcy1xa2h3sfw92w9rq9v0mnclamjxmzs5fqi469y5mwmm"; depends=[gplots RColorBrewer]; }; - GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.50.0"; sha256="0bkhadr61i9jsfwp3i3clz4b0yjdav8rnnrmfplh86sq700y58v5"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; - GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.38.0"; sha256="1nq6n4bp3ydgpjbsgg3222dd345l5z5yp4mvs4haps6wlc6bin4i"; depends=[Biobase limma MASS]; }; - GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.14.0"; sha256="1w7nckmjc4zg5a20f4hjqjavmkdwngkjp70akrf3bh1qmbvpdr2a"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; - GeneTonic = derive2 { name="GeneTonic"; version="1.6.4"; sha256="1qj12jpd5q95lf0fwq26ykpnw6kjp54pdnbh0ipgn37fl9v5vbcx"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinyAce shinycssloaders shinyWidgets SummarizedExperiment tidyr tippy viridis visNetwork]; }; - GeneticsPed = derive2 { name="GeneticsPed"; version="1.56.0"; sha256="1gvk3wg5mqyc8j95l4djfc55ymv4i08az67znnly3r8376m07mqw"; depends=[gdata genetics MASS]; }; - GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.30.1"; sha256="1ly851w6xy144qvmpdv7p64yc45bqxmvny2rzgz691h3qbin3x55"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; - GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.30.0"; sha256="1jwksis94mk8bmdggk0w3kvxqwp4di6x78xgsjk6ij54710adyq9"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; - GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.18.0"; sha256="1nr504dchiifbagrjq0cck5rzd23dcfnvx6bsw9wikw5mg4gib9l"; depends=[dplyr GenomicRanges httr IRanges jsonlite magrittr rappdirs readr rlang S4Vectors SummarizedExperiment tibble xml2]; }; - GenomicDistributions = derive2 { name="GenomicDistributions"; version="1.2.0"; sha256="07c3rxvgm2abs01kzczbpy7kmn3yzcdf5z35dlk1bc2ry3s5dsd1"; depends=[Biostrings data_table dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges plyr reshape2]; }; - GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.46.5"; sha256="1fhahqh87cikfrwqkm2z4nq3jyi530qvsbmf09j2hyhsm87hhrgg"; depends=[AnnotationDbi Biobase BiocGenerics BiocIO biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; - GenomicFiles = derive2 { name="GenomicFiles"; version="1.30.0"; sha256="0i5y6dk6z18yqj5k4zy756c6l57z9jq2w5a5dksh2di4qgdgjx3x"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges MatrixGenerics Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.28.0"; sha256="090kxq5jn1jfr9fgbkvbjr5g4bcxzgsaal3gc9yx1n7pgmhccfmb"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; - GenomicOZone = derive2 { name="GenomicOZone"; version="1.8.0"; sha256="1dx72y7kmj7ng3r6qn9bzlmgq9pf7g738myhgrnmk4ivjl6f615w"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges lsr plyr Rdpack S4Vectors]; }; - GenomicRanges = derive2 { name="GenomicRanges"; version="1.46.1"; sha256="133r27wsdyppjv9kq0d2xamx007lkf416nnlaygs4hs3a76p9xwx"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; - GenomicScores = derive2 { name="GenomicScores"; version="2.6.1"; sha256="17v2v7aklljy17nivwmani2jxkbffqs2yr38hlspjlvgpidpf9ln"; depends=[AnnotationHub Biobase BiocFileCache BiocGenerics BiocManager Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors XML]; }; - GenomicSuperSignature = derive2 { name="GenomicSuperSignature"; version="1.2.1"; sha256="08z1h70j82s405q0hqahb4n580ibqaqml7skq0p4w8rgchrvbs7q"; depends=[Biobase BiocFileCache ComplexHeatmap dplyr flextable ggplot2 ggpubr plotly S4Vectors SummarizedExperiment]; }; - GenomicTuples = derive2 { name="GenomicTuples"; version="1.28.0"; sha256="15rv41z4mxj8nn1mkvs73warygd1cmwi9m7lshgld1wf6zk43ypl"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; - GeoDiff = derive2 { name="GeoDiff"; version="1.0.0"; sha256="0ci1x5q8k6rjarciasg72j0ngrv79ya2j8plhgjck41v8g10mbi0"; depends=[Biobase GeomxTools lme4 Matrix NanoStringNCTools plyr Rcpp RcppArmadillo robust roptim testthat withr]; }; - GeomxTools = derive2 { name="GeomxTools"; version="2.0.0"; sha256="0pzad7m77aib9pa0p37sa2wcmlcydy5nvz4xiax11szjc0y4ay7f"; depends=[Biobase BiocGenerics data_table dplyr EnvStats lmerTest NanoStringNCTools outliers readxl reshape2 rjson S4Vectors]; }; - GladiaTOX = derive2 { name="GladiaTOX"; version="1.10.2"; sha256="0hdbfsjn3xfmaprhq3vz78hwshp1dgvvmbrs8n76dnsvh8bxwsgx"; depends=[brew data_table DBI ggplot2 ggrepel numDeriv RColorBrewer RCurl RJSONIO RMySQL RSQLite stringr tidyr XML xtable]; }; - Glimma = derive2 { name="Glimma"; version="2.4.0"; sha256="0qkbx9n2vb7kvb5f00csnbffy5bm7hhbdvkx2isgzi0wv0y59kx9"; depends=[DESeq2 edgeR htmlwidgets jsonlite limma S4Vectors SummarizedExperiment]; }; - GlobalAncova = derive2 { name="GlobalAncova"; version="4.12.0"; sha256="12r62a67k3p85lcs8mffai3bzrxq52vm3blgvia3by16nids42d0"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; - GmicR = derive2 { name="GmicR"; version="1.8.0"; sha256="18rfbdljfc6hl4p9c66j36j0yg19fp8nhv4gny6f8qa9x3n172sd"; depends=[AnnotationDbi ape bnlearn Category data_table doParallel DT foreach GOstats gRain gRbase GSEABase org_Hs_eg_db org_Mm_eg_db reshape2 shiny WGCNA]; }; - GraphAT = derive2 { name="GraphAT"; version="1.66.0"; sha256="07rfgg04qq06mypf8nvaly30jzc58pxw7m19v62hgsjlmyyd3g7g"; depends=[graph MCMCpack]; }; - GraphAlignment = derive2 { name="GraphAlignment"; version="1.58.0"; sha256="0z386wi7rzpc7j6qv98q2rq0a5zm30rryhvir8bi37y7kkgfb45k"; depends=[]; }; - GraphPAC = derive2 { name="GraphPAC"; version="1.36.0"; sha256="19925ha3mr7j399nlwb2vjvsrf7s4xjbq8b6z1k304kxk7d13yp5"; depends=[igraph iPAC RMallow TSP]; }; - GreyListChIP = derive2 { name="GreyListChIP"; version="1.26.0"; sha256="1h7h27q6l9d8j0shklyrh135zrwx56v4zzmm21cj1b7dvmwvpbcv"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; - Guitar = derive2 { name="Guitar"; version="2.10.0"; sha256="082yja4mmsq77sllv3c88agxjbb6jxwil2krb8fkfsijvyyx11c9"; depends=[AnnotationDbi dplyr GenomicFeatures GenomicRanges ggplot2 knitr magrittr rtracklayer]; }; - Gviz = derive2 { name="Gviz"; version="1.38.3"; sha256="0fmykq3b697n6lf33n5ldv2zxp7ccihpad1n95dqmrgfq4919kis"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; - HDF5Array = derive2 { name="HDF5Array"; version="1.22.1"; sha256="1al4a88pgdl7hfhphsnwl1gg1c1kmw37wcdr4v4pfsw5l8ff7nx4"; depends=[BiocGenerics DelayedArray IRanges Matrix rhdf5 rhdf5filters Rhdf5lib S4Vectors]; }; - HDTD = derive2 { name="HDTD"; version="1.28.0"; sha256="1pd0bbni121b5yq3j3sn8n67xgjfm4zygcpx7zgddcnq250544vl"; depends=[Rcpp RcppArmadillo]; }; - HELP = derive2 { name="HELP"; version="1.52.0"; sha256="17bhh9phny0cw3n61582wywl395ls0ak68y8fqv1ibbqiip193ag"; depends=[Biobase]; }; - HEM = derive2 { name="HEM"; version="1.66.0"; sha256="1jv8fwqsk05g7l7bbl7z928m83gk0gw70pix0dp901j9hm1xqjpb"; depends=[Biobase]; }; - HGC = derive2 { name="HGC"; version="1.2.0"; sha256="0skvfx81xvfi8bwlskq1ylr6c5sblh3qzidbz1nb2xa2m4pck2q0"; depends=[ape dendextend dplyr ggplot2 Matrix mclust patchwork RANN Rcpp RcppEigen]; }; - HIBAG = derive2 { name="HIBAG"; version="1.30.2"; sha256="0wg0p650dlnky62rbhfs1gg4hmq93dkmmxswkhdqkkbdqi62d107"; depends=[RcppParallel]; }; - HIPPO = derive2 { name="HIPPO"; version="1.6.0"; sha256="0fr1zhavdzf7rmf0diy4r9qphfcphzbcqcs4370fyd4vyz5bid6l"; depends=[dplyr ggplot2 ggrepel gridExtra irlba magrittr Matrix reshape2 rlang Rtsne SingleCellExperiment umap]; }; - HIREewas = derive2 { name="HIREewas"; version="1.12.0"; sha256="0bjj5h9vc1fhzcn31hvkpcmnx6gzmz3fhczgy21q0ngp26ny10yd"; depends=[gplots quadprog]; }; - HMMcopy = derive2 { name="HMMcopy"; version="1.36.0"; sha256="0kbvdsvvrrzy05a5qiybc9chjfiidcz5mk09nj9s2x6vsj2whwxi"; depends=[data_table]; }; - HPAStainR = derive2 { name="HPAStainR"; version="1.4.1"; sha256="13q2kqbwv3a3qczq0ffr9l4wnkzwkqhq1v33z1948pj4nlx7kd1s"; depends=[data_table dplyr scales shiny stringr tibble tidyr]; }; - HPAanalyze = derive2 { name="HPAanalyze"; version="1.12.0"; sha256="1cm64d8sp2z03s5i6i8a625wr80nw5c1ri7kfrx5jv60379srbz9"; depends=[dplyr ggplot2 gridExtra openxlsx tibble xml2]; }; - HPiP = derive2 { name="HPiP"; version="1.0.0"; sha256="0wfyy4lpv24zad30qngicvrg1yaz9xzx8n48fgcafwps09n8ai25"; depends=[caret corrplot dplyr ggplot2 httr igraph magrittr pROC protr PRROC purrr readr stringr tibble tidyr]; }; - HTSFilter = derive2 { name="HTSFilter"; version="1.34.0"; sha256="0jc2yxx0jysd1h2qnn3mv3zfm8bxc96wig6gywlqxy5rbcrm3gm5"; depends=[Biobase BiocParallel DESeq2 edgeR]; }; - HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.24.0"; sha256="12q18chk89vvqh02yqx9fg8vfmb5xlk96b1mrhiyx2dfa7z2jj80"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; - HTqPCR = derive2 { name="HTqPCR"; version="1.48.0"; sha256="1d7qj5yv6kzqmdrnp5pd8qv1yr4bg8cs39p8ib0i0k8b4wr97kq3"; depends=[affy Biobase gplots limma RColorBrewer]; }; - Harman = derive2 { name="Harman"; version="1.22.0"; sha256="174fnjd332qahm8m5dyism83zzq3vpz3pmj6k645hpal1w2x5x5z"; depends=[Rcpp]; }; - Harshlight = derive2 { name="Harshlight"; version="1.66.0"; sha256="0a0zxy2f5ff74gaa24mahym2az2azp4k4i4hw8kgj7zj4mj6pzjz"; depends=[affy altcdfenvs Biobase]; }; - Heatplus = derive2 { name="Heatplus"; version="3.2.0"; sha256="0yrnjrbfn8vjzvp2742lyxdqca4s18h73j44qxw7ib95x3p4lndf"; depends=[RColorBrewer]; }; - HelloRanges = derive2 { name="HelloRanges"; version="1.20.0"; sha256="1f9fyafp3spxb76xl8ncww0dzfi4dbzh9ijqzs89dc7m10saq89p"; depends=[BiocGenerics Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - HiCDCPlus = derive2 { name="HiCDCPlus"; version="1.2.1"; sha256="0ywy0xwymrd9pknnz654vz31463js3rl3f1avmzjzd4krkf2vdgh"; depends=[bbmle Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicInteractions GenomicRanges InteractionSet IRanges MASS pscl R_utils Rcpp rlang rtracklayer S4Vectors tibble tidyr]; }; - HiCcompare = derive2 { name="HiCcompare"; version="1.16.0"; sha256="0g2gsy27prk8b4anywim0qskishc52zh0p3854v04l6jax26675r"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq rhdf5 S4Vectors]; }; - HiLDA = derive2 { name="HiLDA"; version="1.8.0"; sha256="02yss2nr6f9zb6kd11id4p3zcgdvr66zlf4s404nh1aag221bc7h"; depends=[abind BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot forcats GenomicFeatures GenomicRanges ggplot2 R2jags Rcpp S4Vectors stringr tidyr TxDb_Hsapiens_UCSC_hg19_knownGene XVector]; }; - HiTC = derive2 { name="HiTC"; version="1.38.0"; sha256="1ckiwqfq86k8p3y36iwr7k3y6g4z80n8hb047c0i2491lrn23rhx"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; - HilbertCurve = derive2 { name="HilbertCurve"; version="1.24.0"; sha256="1i6fm91y6dza021d5qc8s03x7qmalmm9bkmcj5rflbra5i6fzivz"; depends=[circlize GenomicRanges HilbertVis IRanges png polylabelr]; }; - HilbertVis = derive2 { name="HilbertVis"; version="1.52.0"; sha256="1vwyzxdjngi1firr8kasiam576kwvlx82g1p7j27vlbs1libr9zk"; depends=[lattice]; }; - HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.52.0"; sha256="0db7chajaghg6wqawap05ckaadgxvcswzd14i4p6gmfq6j4zpk8g"; depends=[HilbertVis]; }; - HubPub = derive2 { name="HubPub"; version="1.2.4"; sha256="044ay6ixbdg9pv0qzifv6ah0573x60ajygxwbpi138akbzgbas71"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; }; - HumanTranscriptomeCompendium = derive2 { name="HumanTranscriptomeCompendium"; version="1.10.0"; sha256="0v0yshvay7z1dalilx4w1jnswrr96gmsm71srh0j1q91f7ikwds9"; depends=[S4Vectors shiny ssrch SummarizedExperiment]; }; - HybridMTest = derive2 { name="HybridMTest"; version="1.38.0"; sha256="1p31y61gjii29pllwpyb27ii96ckkd4v78pddnvz9c8fq61bmk6k"; depends=[Biobase fdrtool MASS survival]; }; - IHW = derive2 { name="IHW"; version="1.22.0"; sha256="0vgij5zyaw3fh7arkg4jy1mizsqzbkcsjl05mh3ng2bqh30kyqqx"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; - ILoReg = derive2 { name="ILoReg"; version="1.4.0"; sha256="0pyjaf84nqgf3s6v7lp7xw4451mgb48mwzn1dj7n8cpiwwd85q2l"; depends=[aricode cluster cowplot dendextend DescTools doRNG doSNOW dplyr fastcluster foreach ggplot2 LiblineaR Matrix parallelDist pheatmap plyr reshape2 RSpectra Rtsne S4Vectors scales SingleCellExperiment SparseM SummarizedExperiment umap]; }; - IMAS = derive2 { name="IMAS"; version="1.18.0"; sha256="101ir2360hycgk7w1ci7f56kdk2f47i31fv97bnlg803qbjc3hkb"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; - IMMAN = derive2 { name="IMMAN"; version="1.14.0"; sha256="1zg4z11v1aw0yscb8p79mh4lpyf8hzph2hdaabrxv9rg0lw1l6pb"; depends=[Biostrings igraph seqinr STRINGdb]; }; - IMPCdata = derive2 { name="IMPCdata"; version="1.30.0"; sha256="0vz9f6zqzprgh2dmlfmbvjian5vkkhbary6vlp59f4v624x63x58"; depends=[rjson]; }; - INDEED = derive2 { name="INDEED"; version="2.8.0"; sha256="1f2i63h4ikdrxyjfzccbhz72195sylqd1766m8b7vz8k4638wbbq"; depends=[devtools glasso igraph visNetwork]; }; - INPower = derive2 { name="INPower"; version="1.30.0"; sha256="1a2ni53b49qiaryyzl4gq7rlkypqrijw3b5ah2l2lcgkjaas6mmj"; depends=[mvtnorm]; }; - INSPEcT = derive2 { name="INSPEcT"; version="1.24.0"; sha256="072kv5k3giyll1clzrg0anqhyl4qbi7cjnmkqz25zdl5bab9l7jk"; depends=[Biobase BiocGenerics BiocParallel DESeq2 deSolve gdata GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges KernSmooth plgem pROC rootSolve Rsamtools rtracklayer S4Vectors shiny SummarizedExperiment TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - IONiseR = derive2 { name="IONiseR"; version="2.18.0"; sha256="1hdg446z5s616aaalzz49if1wp9nmzm2mbyva82m1vz8i7ih9m4h"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; - IPO = derive2 { name="IPO"; version="1.20.0"; sha256="0cmdz3d5ayjgk4dwdscczxz1zcrfcsq2ajj5rzwhz9jxh8j272c9"; depends=[BiocParallel CAMERA rsm xcms]; }; - IRISFGM = derive2 { name="IRISFGM"; version="1.2.0"; sha256="1yqn4yy7bi6xkywr8pr742a87vxfynwxk67ddld7642dz0mfcb85"; depends=[AdaptGauss AnnotationDbi anocva clusterProfiler colorspace DEsingle DrImpute ggplot2 ggpubr ggraph igraph knitr Matrix MCL mixtools org_Hs_eg_db org_Mm_eg_db pheatmap Polychrome RColorBrewer Rcpp scater scran Seurat SingleCellExperiment]; }; - IRanges = derive2 { name="IRanges"; version="2.28.0"; sha256="07zs231wbfwwc1c1165rhp711fbss40p9l8kyjjv9flzpr3hr1pg"; depends=[BiocGenerics S4Vectors]; }; - ISAnalytics = derive2 { name="ISAnalytics"; version="1.4.3"; sha256="1ki8b92qd361pmb9azy2kd4nsxjr9rz3cvxg5ih92k0ps4yhadak"; depends=[BiocParallel data_table dplyr fs ggplot2 ggrepel lifecycle lubridate magrittr psych purrr Rcapture readr readxl rlang stringr tibble tidyr zip]; }; - ISoLDE = derive2 { name="ISoLDE"; version="1.22.0"; sha256="16qfv44341n1l69zh86k445kspaygy0y4by7jms8fhnyiw7pd261"; depends=[]; }; - ITALICS = derive2 { name="ITALICS"; version="2.54.0"; sha256="17d12vcbwmvqfg5bfp5854g2n3c6mg30gdm5cm07k29h1y6q25h7"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; - IVAS = derive2 { name="IVAS"; version="2.14.0"; sha256="02cwi01iamig91hwjsx481l61cxxzrhazxfnw2p1q18ydkc9w6fv"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; - IWTomics = derive2 { name="IWTomics"; version="1.18.0"; sha256="1d9mh2j8al6mzzshsxr1rzqqdqy10rf83yskk2wda37mx1m1i891"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; - Icens = derive2 { name="Icens"; version="1.66.0"; sha256="08jd7g28mazvwd3qbq8y26czmkz45avp4vy8l7i5d6qajwzqzgzs"; depends=[survival]; }; - IdeoViz = derive2 { name="IdeoViz"; version="1.30.0"; sha256="0cclk2pcb2mvsfxhw0zq3qlnfkblb1gqxnn7xypmlf0bm6hcvl4g"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; - IgGeneUsage = derive2 { name="IgGeneUsage"; version="1.8.0"; sha256="1c9dl6f6xgmqhkhklx94rlx0gbjy2b5k6cd59cjv25b7h2jdv3yq"; depends=[Rcpp reshape2 rstan StanHeaders SummarizedExperiment]; }; - ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.22.0"; sha256="1mdw3rc0p73mwyhdbhmw0pds25qrca8ywld2bi7ws5gh8ivv5lfh"; depends=[Biobase curl data_table digest flowCore flowWorkspace ggplot2 gplots heatmaply httr jsonlite pheatmap plotly preprocessCore R6 Rlabkey rmarkdown scales]; }; - InPAS = derive2 { name="InPAS"; version="2.2.0"; sha256="11hgqbnfny72kv64vp32w90d5dj3d5pn7x9hj0w2qqxnpxzfy8z5"; depends=[AnnotationDbi Biobase BiocParallel Biostrings BSgenome cleanUpdTSeq DBI depmixS4 dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges limma magrittr plyranges preprocessCore purrr readr reshape2 RSQLite S4Vectors]; }; - InTAD = derive2 { name="InTAD"; version="1.14.0"; sha256="1q4880cdmns437l3dvhvc13cvzy1v2ykkxiyn96r8zydd2s0dh6p"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; - Informeasure = derive2 { name="Informeasure"; version="1.4.0"; sha256="0h6990ga4algwgc05092ii46ysj3v5f2ah9lk8wfd17wg6l678dg"; depends=[entropy]; }; - IntEREst = derive2 { name="IntEREst"; version="1.18.0"; sha256="1949smn27d3k10s4cwwri1jaqdp0sqym57m68y6jxkyb2wcbchs8"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; - InterCellar = derive2 { name="InterCellar"; version="2.0.0"; sha256="0ln3gq4gbr91dn8cfx5ykgx5pdqm1y9x8v4v74a261icd4mi1s49"; depends=[biomaRt circlize colorspace colourpicker ComplexHeatmap config data_table dendextend dplyr DT factoextra fmsb fs ggplot2 golem htmltools htmlwidgets igraph plotly plyr readxl rlang scales shiny shinyalert shinycssloaders shinydashboard shinyFeedback shinyFiles signal tibble tidyr umap visNetwork wordcloud2]; }; - InterMineR = derive2 { name="InterMineR"; version="1.16.0"; sha256="0ab29ppcg0qaxb34gfp7yk0f7z77lfxzz2xjsc2baiymbbv3r0vr"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; - InteractionSet = derive2 { name="InteractionSet"; version="1.22.0"; sha256="19m2mpby73zanai68rlqvzx9zccli4dz4kix93acrw9755xp3bsw"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; - InteractiveComplexHeatmap = derive2 { name="InteractiveComplexHeatmap"; version="1.2.0"; sha256="1rmzl0qyz2qm6zjdyjlipa0bp15xb7p25g7wvd2mlxvpn47hf80r"; depends=[clisymbols ComplexHeatmap digest fontawesome GetoptLong htmltools IRanges jsonlite kableExtra RColorBrewer S4Vectors shiny svglite]; }; - IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.16.0"; sha256="18x08rfxvqf1g7haidbzmlg5zd22w8140rhba5jzxpcyx8mcz6h7"; depends=[FGNet igraph knitr]; }; - IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.12.0"; sha256="0z2aw2ldar3qq7ddza0k87gksix1j829j76arqyg4w2w0yp9r2q6"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; - IsoCorrectoRGUI = derive2 { name="IsoCorrectoRGUI"; version="1.10.0"; sha256="0mbfm2v8hhmff3yix9znvb6fbjwlgf76bgjyzx000dvpnp7pjrz7"; depends=[IsoCorrectoR readxl tcltk2]; }; - IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.30.0"; sha256="0970w1g6na4iwqcyml2b9amx816n05n78ara1qrxvdx6swxw3r8s"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust RColorBrewer Rcpp relimp tkrplot xlsx]; }; - IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.16.0"; sha256="14bqf39gw5ab5r9sr3afkig1jbzdvds1bmcvc6bpb45kschx7fwf"; depends=[Biobase BiocGenerics Biostrings BSgenome DBI DEXSeq dplyr DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr plyr RColorBrewer RCurl readr reshape2 rtracklayer stringr tibble tximeta tximport VennDiagram XVector]; }; - KBoost = derive2 { name="KBoost"; version="1.2.0"; sha256="1c4l5lwiarm6l6nbqcw85sf16am3x06a1wfsfcm91pchkdl1jx08"; depends=[]; }; - KCsmart = derive2 { name="KCsmart"; version="2.52.0"; sha256="17glg0m4c5k5ridr3k25r4wpwsp1bsl51lgi270sl590rbj2634n"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; - KEGGREST = derive2 { name="KEGGREST"; version="1.34.0"; sha256="1np3i1k7rki9akh70156ggmid52yy0is9q5vd3s45ra7an0ap279"; depends=[Biostrings httr png]; }; - KEGGgraph = derive2 { name="KEGGgraph"; version="1.54.0"; sha256="1qqvbv1sq9j570syb2802ya2ffg1k8f1w986wr6ksqkwxb9qbbm4"; depends=[graph RCurl Rgraphviz XML]; }; - KEGGlincs = derive2 { name="KEGGlincs"; version="1.20.0"; sha256="00dxgb1lg6a38w58dqchma854zg999byb7iil9s5bj5czlycdqsx"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; }; - KinSwingR = derive2 { name="KinSwingR"; version="1.12.0"; sha256="0cadjv0bymarmn00i5ybv2dssvwhr7q588qwa5fxly58rgppqxbj"; depends=[BiocParallel data_table sqldf]; }; - KnowSeq = derive2 { name="KnowSeq"; version="1.8.0"; sha256="1b69hx47pnxmd8kcrsfcvr3498f1lclgicvvbf0glhllag8202p9"; depends=[caret cqn e1071 edgeR ggplot2 gridExtra Hmisc httr jsonlite kernlab limma praznik R_utils randomForest reshape2 rlist rmarkdown stringr sva XML]; }; - LACE = derive2 { name="LACE"; version="1.6.0"; sha256="01p3paiz4qjyvmphnm157k5ihqs6413gah6y68r3ziirqsccccls"; depends=[data_tree igraph RColorBrewer Rfast SummarizedExperiment]; }; - LBE = derive2 { name="LBE"; version="1.62.0"; sha256="0l2k69n267si9jdkbw7immin93vvs8ilf3vrnmjjd68d28501psf"; depends=[]; }; - LEA = derive2 { name="LEA"; version="3.6.0"; sha256="09hsb17r2iz8iadyja0y7sgrs3nic1dwl3ghfs073i1mbvhqd6hh"; depends=[]; }; - LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.20.0"; sha256="1nbb29mn4jybv15xkw9fkjz19rm3ydqiyvq8mf85v078ry701bkr"; depends=[CAMERA xcms]; }; - LOLA = derive2 { name="LOLA"; version="1.24.0"; sha256="09cnh0qlwk7pf4r6pnv3dlyxr2fq95ah3zq0n04inlm424i2s87d"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; - LPE = derive2 { name="LPE"; version="1.68.0"; sha256="0in97g7yj7s871f5vmvc2racrcmd60dnvdmdx9wnkcymxlpvvk0h"; depends=[]; }; - LPEadj = derive2 { name="LPEadj"; version="1.54.0"; sha256="05dy18bcjg50w05xmm8j3585wm5s97jyyvgz6a7v6y8qw14z8j86"; depends=[LPE]; }; - LRBaseDbi = derive2 { name="LRBaseDbi"; version="2.4.0"; sha256="13vzh4ma1msl8xn5m12w7wsppjsaq0a5xhbij27xg5h6wdwn4p8s"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; - LRcell = derive2 { name="LRcell"; version="1.2.0"; sha256="1793a94jvlpfn6dnvc1q1kprxv6gr41q3mf424ggg2hkkqx3b14w"; depends=[AnnotationHub BiocParallel dplyr ExperimentHub ggplot2 ggrepel magrittr]; }; - LedPred = derive2 { name="LedPred"; version="1.28.0"; sha256="0kwj4qavxx34s5xhhx8w7rhx8lni46ynf45bjryz1v6x3hcw7kvw"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; - LineagePulse = derive2 { name="LineagePulse"; version="1.14.0"; sha256="0ycmzxf5pm0c36924kggn02rhx5fi4345xf569y4zq4pyb9lzc4c"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; - LinkHD = derive2 { name="LinkHD"; version="1.8.0"; sha256="006633y3h5702b92z9i6yj4agvwirmbvm48zqcgkn71gm21ln1bd"; depends=[cluster data_table emmeans ggplot2 ggpubr gridExtra MultiAssayExperiment reshape2 rio scales vegan]; }; - Linnorm = derive2 { name="Linnorm"; version="2.18.0"; sha256="1bdnglznsfs1kdscqyjv595wiy09khcv9kxm4fmbnmksisqjz5qj"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; - LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.48.0"; sha256="006z8jiw7xcsmv95na4rd4y5n6s3j5gb2jvs3k1b1vl85jw656zf"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; - LoomExperiment = derive2 { name="LoomExperiment"; version="1.12.0"; sha256="1ry960v987q0zk57z1jxgj0gnvlcd05hg75dvgi4hg9m0j4wmx4v"; depends=[BiocIO DelayedArray GenomicRanges HDF5Array Matrix rhdf5 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; - LowMACA = derive2 { name="LowMACA"; version="1.24.0"; sha256="08pn7ah79lxk24j7x8d3ngj50mfb6bfngqj72ahs0vibypxbdhnj"; depends=[BiocParallel Biostrings cgdsr data_table gridBase httr LowMACAAnnotation motifStack RColorBrewer reshape2 stringr]; }; - LymphoSeq = derive2 { name="LymphoSeq"; version="1.22.0"; sha256="0nkbl7g6ssrrqfkd7hbb42x4kr3av9c739pbhi3mlvd6zbxxd6ka"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; - M3C = derive2 { name="M3C"; version="1.16.0"; sha256="0jsql5wd58hs5mnn9wq5b4kl3z57y6amykirfb3k047zpyi8ijnh"; depends=[cluster corpcor doParallel doSNOW foreach ggplot2 Matrix matrixcalc Rtsne umap]; }; - M3Drop = derive2 { name="M3Drop"; version="1.20.0"; sha256="1r86q4gwv6haqb4z6b7a37cgkxm0a7byyv7630ag0kv27hq749xq"; depends=[bbmle gplots Hmisc irlba Matrix matrixStats numDeriv RColorBrewer reldist statmod]; }; - MACPET = derive2 { name="MACPET"; version="1.14.0"; sha256="087x5qk3s0s0wk0rvd88b4b03fhj8c12hvin97y2xqikh8bsjwjb"; depends=[BH bigmemory BiocParallel Biostrings futile_logger GenomeInfoDb GenomicAlignments GenomicRanges GEOquery gtools InteractionSet intervals IRanges knitr plyr Rbowtie Rcpp Rsamtools rtracklayer S4Vectors ShortRead]; }; - MACSQuantifyR = derive2 { name="MACSQuantifyR"; version="1.8.0"; sha256="1zhs1jjnzfrbhln5cyb6mr4mns6ad9dzrkr0miwknqbvzbyq2i8z"; depends=[ggplot2 ggrepel gridExtra lattice latticeExtra png prettydoc readxl rmarkdown rvest xml2]; }; - MACSr = derive2 { name="MACSr"; version="1.2.0"; sha256="0b1h233bz7yqcnjgr71lgsj8cj4r41icxsblizd4l071w8md4qrr"; depends=[AnnotationHub basilisk ExperimentHub reticulate S4Vectors]; }; - MADSEQ = derive2 { name="MADSEQ"; version="1.20.0"; sha256="1h0a9r05nvk6gymak8cxfx8i6x2k9ra5d60ndj08b2x3kqkn1gvg"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; - MAGAR = derive2 { name="MAGAR"; version="1.2.0"; sha256="1dpa58arfcfq6knjs85crp3cpj2hfhvhsl7cv0bfpljavq2i43wp"; depends=[argparse bigstatsr crlmm data_table doParallel ff HDF5Array igraph impute jsonlite plyr reshape2 rjson RnBeads RnBeads_hg19 snpStats UpSetR]; }; - MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="1.14.0"; sha256="118nn59b5dc9aq953x1sx4yy4hjagy1pnx5ga888avrg91gwlrsl"; depends=[Biobase clusterProfiler enrichplot ggplot2 ggrepel gridExtra reshape2]; }; - MAI = derive2 { name="MAI"; version="1.0.0"; sha256="14mwfjx8b3miykbs26h5ha1yj2hdsxlakslvra31vkbx2m3mf8ia"; depends=[caret doParallel e1071 foreach future future_apply missForest pcaMethods S4Vectors SummarizedExperiment tidyverse]; }; - MAIT = derive2 { name="MAIT"; version="1.28.0"; sha256="0f343lsn90lg8l0774js479rg5zl0kq5lyicy3n3bgjf1wwlvalx"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; - MANOR = derive2 { name="MANOR"; version="1.66.0"; sha256="12bsca5qzpmh4784ml4nvhsp65q5aipsajwqkb2ak42kz6k662p3"; depends=[GLAD]; }; - MAST = derive2 { name="MAST"; version="1.20.0"; sha256="14h6giny9lhzqjsx3h7gdhsm8wfwnvp5zsl4avrflip0jmsn45yy"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; - MBASED = derive2 { name="MBASED"; version="1.28.0"; sha256="11rbsaki3nbzil2p8fv7b7biykb60398ayq8sc8drqpiam15myy7"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; - MBAmethyl = derive2 { name="MBAmethyl"; version="1.28.0"; sha256="1jkvx523spv55qrikg26xc2r9qb72y7kfa161ha6jjm8l57rb6bv"; depends=[]; }; - MBCB = derive2 { name="MBCB"; version="1.48.0"; sha256="06idlf8s0a59q45rckflxi5m3i7rgn8lphzyw2fgajvv4df5j7q3"; depends=[preprocessCore tcltk2]; }; - MBQN = derive2 { name="MBQN"; version="2.6.2"; sha256="1wzpa45nxn8z96q6f08h8h5c77nfbwapxb494nrk1gdpszcqsq7l"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rmarkdown SummarizedExperiment xml2]; }; - MBttest = derive2 { name="MBttest"; version="1.22.0"; sha256="115bkavx4pqy7sh70m5jmghk784f4cqm6z91z5s44m8c00a58vnp"; depends=[gplots gtools]; }; - MCbiclust = derive2 { name="MCbiclust"; version="1.18.0"; sha256="1sswmmdkxw41pzqzqxs8rq581jx1wprcmafagnn4n39h2mw00wwy"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; - MDTS = derive2 { name="MDTS"; version="1.14.0"; sha256="124ixdshragwgnr4rz5qii2j0j74ybm5h8y3k2h1kba56632ff1s"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; - MEAL = derive2 { name="MEAL"; version="1.24.0"; sha256="10v5xncsfanisk74x4nqgyraypckxznb5pzaaa92nlxakly80qgj"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; - MEAT = derive2 { name="MEAT"; version="1.6.0"; sha256="161pdgsnwa9xj1s67d0k65pf3af8mzl0h6p9xsjksfs1f717yw32"; depends=[dplyr dynamicTreeCut glmnet impute minfi RPMM stringr SummarizedExperiment tibble wateRmelon]; }; - MEB = derive2 { name="MEB"; version="1.8.0"; sha256="13cxv0m4kcfrjs63lv9a29pjmi45ywvah3k62xq6y123pczpkv4b"; depends=[e1071 SummarizedExperiment]; }; - MEDIPS = derive2 { name="MEDIPS"; version="1.46.0"; sha256="0rkrx75qvldlc12m0ijky513ka6p82zlcpany604di3k4gdvvazp"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; - MEDME = derive2 { name="MEDME"; version="1.54.0"; sha256="1av3wijvx7m5m9ickpxxwljanxand8sga00lkkjwyci55jnrvzsi"; depends=[Biostrings drc MASS]; }; - MEIGOR = derive2 { name="MEIGOR"; version="1.28.0"; sha256="18046q1nnvfb2ins248jkz651smz74cib1yzak4fgd05wxl5vl1y"; depends=[CNORode deSolve Rsolnp snowfall]; }; - MGFM = derive2 { name="MGFM"; version="1.28.0"; sha256="0ihq2faqnja4p138rwljh3wv56swjbad6wljry6siawsfnkc1jb7"; depends=[annotate AnnotationDbi]; }; - MGFR = derive2 { name="MGFR"; version="1.20.0"; sha256="17acf2qfp6qk1n2q5bc5drrl0d876w6zpv7j7k6vhwq801yfka45"; depends=[annotate biomaRt]; }; - MIGSA = derive2 { name="MIGSA"; version="1.18.0"; sha256="13ilzr39pbq9slh5rf30hmsvppbqkdqim420wdasgg8psysjh2hf"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev jsonlite limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz vegan]; }; - MIMOSA = derive2 { name="MIMOSA"; version="1.32.0"; sha256="0c9wn8xp6n96nfjcgy7f5i9hx5gg3qhiclnswzpv9z4vyc1qy887"; depends=[Biobase coda data_table dplyr Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape rlang scales testthat tidyr]; }; - MIRA = derive2 { name="MIRA"; version="1.16.0"; sha256="0qxfpj1qqn1f9skiz392s2f96nvzc75a7axy0zzbbpds5cxmy11d"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; - MLInterfaces = derive2 { name="MLInterfaces"; version="1.74.0"; sha256="1nzy04fqwzb0ywiafgx3m3i2n1b0g4pcg8mlgh8yz5d3mmna4kag"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter magrittr MASS mlbench pls RColorBrewer Rcpp rpart sfsmisc shiny threejs]; }; - MLP = derive2 { name="MLP"; version="1.42.0"; sha256="0giccwv7cw2cigcnpxv0bn5c3jca58032rl8yjkja8vv6gdgin3h"; depends=[AnnotationDbi gplots]; }; - MLSeq = derive2 { name="MLSeq"; version="2.12.0"; sha256="0z722cbbvkkfpzli47n9dhyj3n02gibffy1l06imwvzxcvahcfyj"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma pamr plyr sSeq SummarizedExperiment testthat VennDiagram xtable]; }; - MMAPPR2 = derive2 { name="MMAPPR2"; version="1.8.0"; sha256="1fl8dmbxr407f0vzv4q3jpaia28igzqxjb6azbck7zgn64wh5i3c"; depends=[Biobase BiocGenerics BiocParallel data_table dplyr ensemblVEP GenomeInfoDb GenomicRanges gmapR IRanges magrittr Rsamtools S4Vectors stringr tidyr VariantAnnotation VariantTools]; }; - MMDiff2 = derive2 { name="MMDiff2"; version="1.22.0"; sha256="1a74q87mlf1pvgy47gyncllsdz460iyk1nrh4m75jywhbxjf36z0"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; - MMUPHin = derive2 { name="MMUPHin"; version="1.8.2"; sha256="1bdcg7mcnpj5n26klc6s2gvind5wdh8ic96glpq6cjgcayaqbd9a"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor tidyr]; }; - MODA = derive2 { name="MODA"; version="1.20.0"; sha256="00v40gsp1x5gbjg4ilnsjq1j512lwl3sbhqmavyxs20i8c8xjcqf"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; - MOFA2 = derive2 { name="MOFA2"; version="1.4.0"; sha256="0vl2ffvh9nsdgw94yavkdkkhihpcb8fdbn3f19aygmwbfg78j3w9"; depends=[basilisk corrplot cowplot DelayedArray dplyr forcats ggplot2 ggrepel HDF5Array magrittr pheatmap RColorBrewer reshape2 reticulate rhdf5 Rtsne stringi tidyr uwot]; }; - MOGAMUN = derive2 { name="MOGAMUN"; version="1.4.0"; sha256="0jq863ql6ydykrbriw5h6ibinchkhsgxq8908gyg5f5jl2sgc8pc"; depends=[BiocParallel igraph RCy3 RUnit stringr]; }; - MOMA = derive2 { name="MOMA"; version="1.6.0"; sha256="1i7rngcclrwc4vmdywlz9yjmy37q0k898mcy8whnwx61lw4n3s8b"; depends=[circlize cluster ComplexHeatmap dplyr ggplot2 magrittr MKmisc MultiAssayExperiment qvalue RColorBrewer readr reshape2 rlang stringr tibble tidyr]; }; - MOSim = derive2 { name="MOSim"; version="1.8.0"; sha256="1mzyz45q3wcry18icardmjlrqzp1fjd8j614lrmz6as9c20jw8a1"; depends=[Biobase dplyr ggplot2 HiddenMarkov IRanges lazyeval matrixStats purrr rlang S4Vectors scales stringi stringr tibble tidyr zoo]; }; - MPFE = derive2 { name="MPFE"; version="1.30.0"; sha256="0v7s8ncji6cz8ffvyqyb6qkkrckncahig7p6ijvn917imsd3ac6j"; depends=[]; }; - MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.12.0"; sha256="1iyczhmfd2wygnb3rmpy10v7w0l2whbs7cwg9axdd7s6gc8dkzfi"; depends=[BiocParallel progress SummarizedExperiment]; }; - MQmetrics = derive2 { name="MQmetrics"; version="1.2.0"; sha256="0d1mphilf3ibpql5i1nxb46kd64ks331wp4kbsdyfrqnlb8wfgfz"; depends=[cowplot dplyr ggforce gghalves ggplot2 ggpubr ggrepel ggridges gridExtra gtable knitr magrittr plyr purrr RColorBrewer readr reshape2 rlang rmarkdown scales stringr tidyr]; }; - MSGFgui = derive2 { name="MSGFgui"; version="1.28.0"; sha256="0dkj2nbv5xv4v4bbmf91av0ryh9pxdfp7fmbqlma4xyf1r7zmx4c"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; }; - MSGFplus = derive2 { name="MSGFplus"; version="1.28.0"; sha256="1k0qm049gk4gjhd88zhxxrpc944r7ndq8dys08ai2kbaqignvb7y"; depends=[mzID ProtGenerics]; }; - MSPrep = derive2 { name="MSPrep"; version="1.4.0"; sha256="0nkmmjzkdxizk2yv1ahgsp8zsr4jjazpzqqwcsx86dhrgf5jk5cz"; depends=[crmn ddpcr dplyr magrittr missForest pcaMethods preprocessCore rlang S4Vectors stringr SummarizedExperiment sva tibble tidyr VIM]; }; - MSnID = derive2 { name="MSnID"; version="1.28.0"; sha256="0dks5h3vp9ly8x24px2rl5blqicxybpxjnxvg2p1bwq8zvjkm38p"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics BiocStyle Biostrings data_table doParallel dplyr foreach ggplot2 iterators msmsTests MSnbase mzID mzR ProtGenerics purrr R_cache Rcpp reshape2 rlang RUnit stringr tibble xtable]; }; - MSnbase = derive2 { name="MSnbase"; version="2.20.4"; sha256="0d3b0i154dyz1wvy2jwf5831bzbmalw7rzvxj8rd7658zjhghgzc"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS MsCoreUtils mzID mzR pcaMethods plyr ProtGenerics Rcpp S4Vectors scales vsn XML]; }; - MSstats = derive2 { name="MSstats"; version="4.2.0"; sha256="1i36a0vhqb2sjllyh6ascfm5fbzf8awazbk1vjq5n8mh2cq72ri9"; depends=[checkmate data_table ggplot2 ggrepel gplots limma lme4 marray MASS MSstatsConvert preprocessCore Rcpp RcppArmadillo survival]; }; - MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.4.1"; sha256="0n8dhc8x9z9n3j91zac67asqgx6q6ikwhcpd56h5x1rhggy8s5db"; depends=[checkmate data_table log4r stringi]; }; - MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.2.0"; sha256="0d78hd9ip2amkj5pjmwy376qhzfd46wqmzl38rbm52d946c69sb8"; depends=[ggplot2 minpack_lm Rcpp]; }; - MSstatsLiP = derive2 { name="MSstatsLiP"; version="1.0.0"; sha256="1vf3f3yd9sgaqs9asq1x2819wkj2x68086g8hag1ln6q7q5j0xws"; depends=[Biostrings checkmate data_table dplyr factoextra ggplot2 ggpubr gridExtra MSstats MSstatsConvert MSstatsPTM purrr Rcpp scales stringr tibble tidyr tidyverse]; }; - MSstatsPTM = derive2 { name="MSstatsPTM"; version="1.4.2"; sha256="1g4m2z9hw86w7fj0539jkfjwjdx47kp4lhy9xa7032dr4aiwkvbh"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringr]; }; - MSstatsQC = derive2 { name="MSstatsQC"; version="2.12.0"; sha256="087lr0maf5kpl642kvvkd9pyakqxy152rzhvrlaj0rxbrfqgxnsw"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; }; - MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.14.0"; sha256="0ygw1zrq219grfy6h650icai9khx49fvdbby5cyydrqbp8m64w77"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; }; - MSstatsSampleSize = derive2 { name="MSstatsSampleSize"; version="1.8.0"; sha256="0ckdy0qy2s2rvh4ijdddkk9calf1s9s0hr52y0kpgr4mb5zrl0jp"; depends=[BiocParallel caret ggplot2 gridExtra MSstats reshape2]; }; - MSstatsTMT = derive2 { name="MSstatsTMT"; version="2.2.7"; sha256="158s2hdnxlaxcpvybg1r5n89qyhj1rvzvxhp02mc2v4m27rw256n"; depends=[checkmate data_table ggplot2 limma lme4 lmerTest MSstats MSstatsConvert]; }; - MVCClass = derive2 { name="MVCClass"; version="1.68.0"; sha256="088gzh33vjkjf78xczqfs89pyg0k7c3533yfvijqxl84ni2ky78z"; depends=[]; }; - MWASTools = derive2 { name="MWASTools"; version="1.18.0"; sha256="0i8880nb6y7sanb9w8cwvd69990p1zmfyi3d98259hl2ly65zywj"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; - Maaslin2 = derive2 { name="Maaslin2"; version="1.8.0"; sha256="08zncj3ywc5pcywi3zgqvvlmqgp9j165b3vrkipvwv15b647jqvp"; depends=[biglm car chemometrics cplm data_table dplyr edgeR ggplot2 glmmTMB hash lme4 lmerTest logging lpsymphony MASS metagenomeSeq optparse pbapply pcaPP pheatmap pscl robustbase vegan]; }; - MantelCorr = derive2 { name="MantelCorr"; version="1.64.0"; sha256="10n1f04088wzki7mw27zwlahv6mmkwjjljkj0g65az5arki02rbl"; depends=[]; }; - MassArray = derive2 { name="MassArray"; version="1.46.0"; sha256="1m3a0h5jmjifm16z9l37rij00jka0k22qryq0lmhvfmidzvn7pbf"; depends=[]; }; - MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.60.1"; sha256="00irq3i5kfck7rnm8ll7rqhqfpp3bisv2h8is50a7wbd7480z7ij"; depends=[waveslim]; }; - MatrixGenerics = derive2 { name="MatrixGenerics"; version="1.6.0"; sha256="1s75p8rrmj24r0vcbaiyw8xg8y84j388mv6iawai7pypfcl8s1z3"; depends=[matrixStats]; }; - MatrixQCvis = derive2 { name="MatrixQCvis"; version="1.2.2"; sha256="1czw4v7dyggk6dkhvqsx01wd5rp9rds3h4g9dbycgb9gz5qmza0h"; depends=[ComplexHeatmap dplyr ggplot2 Hmisc htmlwidgets impute imputeLCMD limma openxlsx pcaMethods plotly proDA rlang rmarkdown Rtsne S4Vectors shiny shinydashboard shinyhelper shinyjs SummarizedExperiment tibble tidyr umap UpSetR vegan vsn]; }; - MatrixRider = derive2 { name="MatrixRider"; version="1.26.0"; sha256="0mv0w3m7waqfm8gy39hmdn00p6cq0a0ndr01scfg1js29jm6sgc2"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; - MeSHDbi = derive2 { name="MeSHDbi"; version="1.30.0"; sha256="0m4vak1sqh28dz4s2i3nhvhpns024kqnapqa6ibqq0spac8fvknr"; depends=[AnnotationDbi Biobase RSQLite]; }; - MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.66.0"; sha256="119d7wz374vshg89p72qbnnxwdk32h4rhz8ay505vnnqkyyiw5ag"; depends=[]; }; - Melissa = derive2 { name="Melissa"; version="1.10.0"; sha256="0ybhmf1kpj77z76izfbc4ipjphrdqdba5kpym6fxq08lcj96j4k7"; depends=[assertthat BiocStyle BPRMeth cowplot data_table doParallel foreach GenomicRanges ggplot2 magrittr matrixcalc mclust MCMCpack mvtnorm ROCR truncnorm]; }; - Mergeomics = derive2 { name="Mergeomics"; version="1.22.0"; sha256="0sjpx6iffrc8yb702xlyxy6bahw2f3dpp8l9vzgm2rl9jll2raxk"; depends=[]; }; - MesKit = derive2 { name="MesKit"; version="1.4.0"; sha256="1bz5krwx8v63s9mzbxivkj88vp0f1i3xk4mplkhra8wrn5kc7qvf"; depends=[AnnotationDbi ape Biostrings circlize ComplexHeatmap cowplot data_table dplyr ggplot2 ggrepel ggridges IRanges mclust phangorn pracma RColorBrewer S4Vectors tidyr]; }; - MetCirc = derive2 { name="MetCirc"; version="1.24.0"; sha256="0wgf6l6ficl4456sa56ccjgj4z9iwp94ar2dhqjyjqz5fxdz4cvk"; depends=[amap circlize ggplot2 MSnbase S4Vectors scales shiny]; }; - MetID = derive2 { name="MetID"; version="1.12.0"; sha256="08n0b76vzv5zlcw0icc2155wbyik2r7x43gf7rxj929l9yx213py"; depends=[ChemmineR devtools igraph Matrix stringr]; }; - MetNet = derive2 { name="MetNet"; version="1.12.1"; sha256="0s54q5q9lw2aljdvy5ab4f9j52jiji582mfa0n26mcv8waq39r4i"; depends=[BiocParallel bnlearn dplyr GENIE3 ggplot2 mpmi parmigene ppcor psych rlang S4Vectors stabs SummarizedExperiment tibble tidyr]; }; - MetaCyto = derive2 { name="MetaCyto"; version="1.16.0"; sha256="0rhxnj7s01mvfg6bnrx86qm88dihzcivz66z0l52qvc13q38zxv7"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; - MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.14.0"; sha256="16j9xx7hka13shih9cb3l49vd06ay83pg434lxz0pkdl3zlfhkak"; depends=[beanplot dplyr ggplot2 gplots igraph Matrix matrixStats RColorBrewer SingleCellExperiment SummarizedExperiment tibble tidyr]; }; - MetaVolcanoR = derive2 { name="MetaVolcanoR"; version="1.8.0"; sha256="178wva1km2j53yr3j49pzahsixqlcln750l433vzl111p7db1xc6"; depends=[cowplot data_table dplyr ggplot2 htmlwidgets metafor metap plotly rlang tidyr topconfects]; }; - Metab = derive2 { name="Metab"; version="1.28.0"; sha256="1syd548djqcmx8d094mzgj4mw9zzfq2sn9fqxm4z2kpgzqnmy400"; depends=[pander svDialogs xcms]; }; - MetaboCoreUtils = derive2 { name="MetaboCoreUtils"; version="1.2.0"; sha256="1srmpyccpdqxxlwq68d03yddb74a3kb6yw6yb6v92mpfal1qgdss"; depends=[MsCoreUtils stringr]; }; - MetaboSignal = derive2 { name="MetaboSignal"; version="1.24.0"; sha256="1rn6i6masadz5y2lrhjfw2rkfri25rnfnx0gxg9pqsg523bz2plb"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; - MethPed = derive2 { name="MethPed"; version="1.22.0"; sha256="1a48yhnaw0lxb9cj0ywd59j7yf109bii0qq7d8v9rl9l1l4apmy8"; depends=[Biobase randomForest]; }; - MethReg = derive2 { name="MethReg"; version="1.4.0"; sha256="1axqcza16r7wqnd78bdzh2sv5yi00ikymawkq0y2spcafb85facr"; depends=[DelayedArray dplyr GenomicRanges ggplot2 ggpubr IRanges MASS Matrix plyr progress pscl readr rlang S4Vectors sesameData sfsmisc stringr SummarizedExperiment tibble tidyr]; }; - MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.26.0"; sha256="1n5gsizg9cfq2mi2v7f81ika423ci7vdgddnlxj5x8vszn5jfavk"; depends=[Biostrings gplots seqinr stringr]; }; - MethylAid = derive2 { name="MethylAid"; version="1.28.0"; sha256="014v732rlqw474bxvgzhw2zcjliry4587lnns12zv8qj8lp780wx"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; - MethylMix = derive2 { name="MethylMix"; version="2.24.0"; sha256="0dwkw0bjaviyf7xshimckcsgx4zdxydl7l0x5skgbgrrc42xb9g3"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; - MethylSeekR = derive2 { name="MethylSeekR"; version="1.34.0"; sha256="0wh4rfw80f9ig8j3ng0b0i297wzrpb4ka1cw0nm8klsqrh0kz3ng"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; - Mfuzz = derive2 { name="Mfuzz"; version="2.54.0"; sha256="0pk632xqacahxf57q9zafdci9qarfq94swlwzdzhav211ln4c5gh"; depends=[Biobase e1071 tkWidgets]; }; - MiChip = derive2 { name="MiChip"; version="1.48.0"; sha256="13j58iz7fjj41833yd8dcks061zknxdy2ky0ka0i56japng0w1l2"; depends=[Biobase]; }; - MiPP = derive2 { name="MiPP"; version="1.66.0"; sha256="1m42rv20f9cwnr97ckx4lm193zf0kjr2v33fisymyaq5rrl7ppfn"; depends=[Biobase e1071 MASS]; }; - MiRaGE = derive2 { name="MiRaGE"; version="1.36.0"; sha256="10laq0b1acsirykb5cjxlpj91lqvmhsd3ammk331njaaczh4mjrx"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; - MicrobiomeProfiler = derive2 { name="MicrobiomeProfiler"; version="1.0.0"; sha256="13awswgm1n30fy73xxlph5aay8a4nkb1gjjzhqy9w7djpm99nw8g"; depends=[clusterProfiler config DT enrichplot ggplot2 golem htmltools magrittr shiny shinycustomloader shinyWidgets]; }; - MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.6.5"; sha256="065axmzs5nzbfm85aah6a5gyp5clffndml26h62fhs0i2msiz3j9"; depends=[ape Biostrings coin dplyr dtplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree ggtreeExtra magrittr MASS patchwork pillar rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; - MineICA = derive2 { name="MineICA"; version="1.34.0"; sha256="00pbhbz44dx5gfzzf1drwny4a779zxk4hjavb1fkpg15cm7c152x"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; - MinimumDistance = derive2 { name="MinimumDistance"; version="1.38.0"; sha256="077prww1k374czkd8dlpy081ki101vpl2gpi4dmjbzzq5q45ld7f"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; - ModCon = derive2 { name="ModCon"; version="1.2.0"; sha256="1pgvkscvsacm7ag6yyqlpxs6c5vyb3hlmk6gzkiarsc1b29iqhm4"; depends=[data_table]; }; - Modstrings = derive2 { name="Modstrings"; version="1.10.0"; sha256="0lnfvv8k0ffpf72zvhxy6831mgr4gajd4miad8rjzaajhqndr2yf"; depends=[BiocGenerics Biostrings crayon GenomicRanges IRanges S4Vectors stringi stringr XVector]; }; - MoonlightR = derive2 { name="MoonlightR"; version="1.20.0"; sha256="1sxdalili8vkp07fn558pcg3azi3v1gqjp6h9cvv1cxdcnjrykkh"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; - MotifDb = derive2 { name="MotifDb"; version="1.36.0"; sha256="0a2zg26zzk7bj5c33mbwl8dx9lh1hns8q8kwp09rbfjdichv7425"; depends=[BiocGenerics Biostrings GenomicRanges IRanges rtracklayer S4Vectors splitstackshape]; }; - MouseFM = derive2 { name="MouseFM"; version="1.4.2"; sha256="0pjqzf10541qd651m26l3265q01g1nziajy8428n1lwn9h2n74ai"; depends=[biomaRt curl data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gtools httr IRanges jsonlite reshape2 rlist scales tidyr]; }; - MsBackendMassbank = derive2 { name="MsBackendMassbank"; version="1.2.0"; sha256="10dgck0rwzfxzlbdf8fclrci6858iqbl9g690fva4zsjllzykbl5"; depends=[BiocParallel DBI IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; }; - MsBackendMgf = derive2 { name="MsBackendMgf"; version="1.2.0"; sha256="0p7lmiijxgms01qsrgih9r8y5q355w67nqmpj5l70c0b52cv3ri9"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; - MsBackendRawFileReader = derive2 { name="MsBackendRawFileReader"; version="1.0.0"; sha256="0gg71a5y6m46xnm45cmkjqbss4c416v8k8s21yp3qids7zc36izi"; depends=[BiocParallel IRanges MsCoreUtils rawrr S4Vectors Spectra]; }; - MsCoreUtils = derive2 { name="MsCoreUtils"; version="1.6.2"; sha256="0614a830gf676ck8j5lkm04158pfvhjb61p3xfdd69gg3d44mk1d"; depends=[clue MASS Rcpp S4Vectors]; }; - MsFeatures = derive2 { name="MsFeatures"; version="1.2.0"; sha256="020ifrijlzdd3qk4bhd9z4knj5d87ildrkl3wcmxvwkvs9rbh8rq"; depends=[MsCoreUtils ProtGenerics SummarizedExperiment]; }; - Mulcom = derive2 { name="Mulcom"; version="1.44.0"; sha256="0s03qi0288fzzby5iyzgy4rarrxfxcyp6434755268vzz2s6pyj5"; depends=[Biobase fields]; }; - MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.20.0"; sha256="1h3b8vqlbd04amjprxd1814zksdrbi01a0xn3906vkbqi43hfyn9"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; - MultiBaC = derive2 { name="MultiBaC"; version="1.4.0"; sha256="0pwg6zmrfqrzra1r6ai68ya5fjf6dy2sl035xnxl617iii96jada"; depends=[ggplot2 Matrix MultiAssayExperiment plotrix ropls]; }; - MultiDataSet = derive2 { name="MultiDataSet"; version="1.22.0"; sha256="17asldnxqvp3sijx7nbi2lbbgnq4iq8z72qlg9080sm5lga1yy1s"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; - MultiMed = derive2 { name="MultiMed"; version="2.16.0"; sha256="1dkvvrvjfc04ad48zywbrmbvm1lcnni6rvvl9gdax11y9lz19341"; depends=[]; }; - MungeSumstats = derive2 { name="MungeSumstats"; version="1.2.4"; sha256="00skqhqkh6fbxifqf8dkc79vyizha4cqpwzyb3h6w7v3yzs6bd7x"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges googleAuthR httr jsonlite magrittr R_utils RCurl rtracklayer stringr VariantAnnotation]; }; - MutationalPatterns = derive2 { name="MutationalPatterns"; version="3.4.1"; sha256="0i6fq6736gvrqn45r7nrhl0ns45qwj1bl4yc6qlalw2g46mjxf6k"; depends=[BiocGenerics Biostrings BSgenome cowplot dplyr GenomeInfoDb GenomicRanges ggalluvial ggdendro ggplot2 IRanges magrittr NMF pracma purrr RColorBrewer S4Vectors stringr tibble tidyr VariantAnnotation]; }; - NADfinder = derive2 { name="NADfinder"; version="1.18.0"; sha256="0glcjxgydj2k7h4963fl465y398xqvq4g393ainvwcgz77kx4sk0"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; - NBAMSeq = derive2 { name="NBAMSeq"; version="1.10.0"; sha256="1him4qg3xmgisl3jsws690ciknvj2876xn8n9gxc8l08cihfminf"; depends=[BiocParallel DESeq2 genefilter mgcv S4Vectors SummarizedExperiment]; }; - NBSplice = derive2 { name="NBSplice"; version="1.12.0"; sha256="12i5zqzxqzh4rfqh02mf2lr9k7xsz1hb945lcng0fc01l7dawd0a"; depends=[BiocParallel car edgeR ggplot2 MASS mppa reshape2]; }; - NCIgraph = derive2 { name="NCIgraph"; version="1.42.0"; sha256="1jw6v4gbx7zajiqm8hqbh1w14xhn5pvila5mkf3flfmsffqbk158"; depends=[graph KEGGgraph R_methodsS3 RBGL RCy3]; }; - NOISeq = derive2 { name="NOISeq"; version="2.38.0"; sha256="0mmvzf8y4gm84hgjdpf86b1y37237wp5mc3x1g6sdiz9qi8l356v"; depends=[Biobase Matrix]; }; - NPARC = derive2 { name="NPARC"; version="1.6.0"; sha256="16zf0kk3y1liqi1hxwrnkdvdp1dva87k1icyvy54n64ny5hhpriv"; depends=[BiocParallel broom dplyr magrittr MASS rlang tidyr]; }; - NTW = derive2 { name="NTW"; version="1.44.0"; sha256="1mmd5yvmmm094avpjdnf47qax4nrb4y6yy25qy8m6qasf6lwplx3"; depends=[mvtnorm]; }; - NanoMethViz = derive2 { name="NanoMethViz"; version="2.0.0"; sha256="1r2aqb4ky1wkzqkm2634qgvl6m9cig59fcqb90sd442n01dw8gi3"; depends=[AnnotationDbi assertthat BiocSingular bsseq cpp11 data_table dplyr e1071 forcats fs GenomicRanges ggplot2 ggthemes glue limma patchwork purrr Rcpp readr rlang Rsamtools RSQLite S4Vectors scales scico stringr SummarizedExperiment tibble tidyr withr zlibbioc]; }; - NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.24.0"; sha256="0vnlxyjn6fkr4gy8qczxq9q9bnfjxc2ikq2yykbpkyb0bpjl3q2q"; depends=[Biobase matrixStats Rcpp]; }; - NanoStringNCTools = derive2 { name="NanoStringNCTools"; version="1.2.0"; sha256="01ghc28ly1dyjqb6xgipgvmr5nlavml8ibrsfpgihd8w8zz7s1ll"; depends=[Biobase BiocGenerics Biostrings ggbeeswarm ggiraph ggplot2 ggthemes IRanges pheatmap RColorBrewer S4Vectors]; }; - NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.26.0"; sha256="0nkj0va3gzc5rskm3lm801a7hip2gjpchx8g3652xs7w5jq82z5f"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; - NanoTube = derive2 { name="NanoTube"; version="1.0.0"; sha256="0wymz5y78kgf1i6ln27hnkin4v617q5zg5ljxa205q8b4qxnghxg"; depends=[Biobase fgsea ggplot2 limma reshape]; }; - Nebulosa = derive2 { name="Nebulosa"; version="1.4.0"; sha256="17ds14l5pn0896az17sswr4vfz335k251ph7l9iaqfi4asjddv6w"; depends=[ggplot2 ks Matrix patchwork Seurat SingleCellExperiment SummarizedExperiment]; }; - NeighborNet = derive2 { name="NeighborNet"; version="1.12.0"; sha256="0j9sl99y6ardaypiakc5irc2lzb8ykv3w8hxkyw3rgspwsqkf80k"; depends=[graph]; }; - NetPathMiner = derive2 { name="NetPathMiner"; version="1.30.0"; sha256="0c0fpwlrvrwgvi8qp4i7xlr75crpb83zm16fhcbx05bi9djhn6ws"; depends=[igraph]; }; - NetSAM = derive2 { name="NetSAM"; version="1.34.0"; sha256="1aw8qfc509m165wi3r60nfc082hrfqxsm0a4gkr072d0j6aymz9v"; depends=[AnnotationDbi biomaRt DBI doParallel foreach GO_db igraph R2HTML seriation survival WGCNA]; }; - NeuCA = derive2 { name="NeuCA"; version="1.0.0"; sha256="0nxhs5ash0z73q123d28j65n9f4w6502nk0l5frswpfibr2iyl94"; depends=[e1071 keras limma SingleCellExperiment]; }; - NewWave = derive2 { name="NewWave"; version="1.4.0"; sha256="03446a0k4fpqqp0kjzvf9q5x4aykmr086jnrkqwl542wyq6irsy5"; depends=[BiocSingular DelayedArray irlba Matrix SharedObject SingleCellExperiment SummarizedExperiment]; }; - NoRCE = derive2 { name="NoRCE"; version="1.6.0"; sha256="0p8w1bkqqgffbmj9j6cwbcw02d5nlqr4g6lpvhny0y7adbc8zcab"; depends=[AnnotationDbi biomaRt DBI dbplyr dplyr GenomicFeatures GenomicRanges ggplot2 GO_db igraph IRanges KEGGREST png RCurl reactome_db readr reshape2 RSQLite rtracklayer rWikiPathways S4Vectors SummarizedExperiment tidyr zlibbioc]; }; - NormalyzerDE = derive2 { name="NormalyzerDE"; version="1.12.0"; sha256="0r8piir3h6yh183r2j7vpv4glhpfirc49ssrg8bpf9w3m042k99i"; depends=[ape Biobase car ggforce ggplot2 limma MASS matrixStats preprocessCore raster RcmdrMisc SummarizedExperiment vsn]; }; - NormqPCR = derive2 { name="NormqPCR"; version="1.40.0"; sha256="08qq4ff56f77mv5b02190df1jpx4k70hwhpvqdvlkcxmv5l1a337"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; - NuPoP = derive2 { name="NuPoP"; version="2.2.0"; sha256="1rsr3b07q78pa9kd3p3b1s9fx30xxan74r1mkb4nx4f8bxg0r3ag"; depends=[]; }; - NxtIRFcore = derive2 { name="NxtIRFcore"; version="1.0.0"; sha256="0v91bx18kknfby5f9xxvn3266cn1gv4nrgqv55bmq3bn1vlqf58q"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array IRanges magrittr NxtIRFdata plotly R_utils Rcpp RcppProgress rhdf5 rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; - OCplus = derive2 { name="OCplus"; version="1.68.0"; sha256="0d21viy7dg870i3xvjq2c7w2djw9riz96fs6lnccg6nqv4gbyinl"; depends=[akima multtest]; }; - ODER = derive2 { name="ODER"; version="1.0.0"; sha256="02wc8h1nadwz11yvmb79ib9v4dpzvb6jsgjbv8ppw82jf18imq9s"; depends=[BiocFileCache BiocGenerics dasper data_table derfinder dplyr GenomeInfoDb GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyr purrr rtracklayer S4Vectors stringr tibble]; }; - OLIN = derive2 { name="OLIN"; version="1.72.0"; sha256="0wr423340z9ckc29alwwgbjbw23clhxyc3kgx5hk0hhxlv6pq9gb"; depends=[limma locfit marray]; }; - OLINgui = derive2 { name="OLINgui"; version="1.68.0"; sha256="0db9c9d5c71xzy3gdpwgxwk9pm0xibm1740zhcpypx4x2rg0lr1i"; depends=[marray OLIN tkWidgets widgetTools]; }; - OMICsPCA = derive2 { name="OMICsPCA"; version="1.12.0"; sha256="0d5hplm94k7hz6lap31jsb5pdh8lb7xl9i0swznm5vzrxrjdifyd"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; - OPWeight = derive2 { name="OPWeight"; version="1.16.0"; sha256="1zkbhb70aam3g1arfb8bc8z4c4bd1qyr1zidz6srx1n25pkhp4ii"; depends=[MASS qvalue tibble]; }; - ORFhunteR = derive2 { name="ORFhunteR"; version="1.2.0"; sha256="0jkpq3hiv6n5c4hy3khs59020p98ig91w78ab37jam3sibykr0c6"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg38 data_table Peptides randomForest Rcpp rtracklayer stringr xfun]; }; - ORFik = derive2 { name="ORFik"; version="1.14.7"; sha256="0n04h94jdq99rggq4bydric0f957kd34yzfqpgafn7hy15p23a7z"; depends=[AnnotationDbi BiocGenerics BiocParallel biomartr Biostrings BSgenome cowplot data_table DESeq2 fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra httr IRanges jsonlite R_utils Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment xml2]; }; - OSAT = derive2 { name="OSAT"; version="1.42.0"; sha256="1ibhrrlfjjils0w6n586s5ws0ybv7ija2p2f0jq3m3m9l324iyx9"; depends=[]; }; - OTUbase = derive2 { name="OTUbase"; version="1.44.0"; sha256="18wmllkc3h8x9ihrg0lzk4jvxjwrccl1jr37inkdmzv4aq5b7ygs"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; - OUTRIDER = derive2 { name="OUTRIDER"; version="1.12.0"; sha256="0ygsk0q1n8h02y4x3ccajkyyryn8gq0dz397l3jryb248g564a4h"; depends=[BBmisc BiocGenerics BiocParallel data_table DESeq2 generics GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges matrixStats pcaMethods pheatmap plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reshape2 S4Vectors scales SummarizedExperiment]; }; - OVESEG = derive2 { name="OVESEG"; version="1.10.0"; sha256="016056f4qjnlz2s3z2vbqxicxwghzrlsfn2bpf741qz9ckv37s27"; depends=[BiocParallel fdrtool limma Rcpp SummarizedExperiment]; }; - OmaDB = derive2 { name="OmaDB"; version="2.10.0"; sha256="0qx0pf50k38pxz5lfhj66bjc6qy12d8nch2pvvcp209gxkqhjq0g"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; - OmicCircos = derive2 { name="OmicCircos"; version="1.32.0"; sha256="1lkncbdq93azp1gv0z4bwdi6l1gpywm096hhn45q7w6f0dy5ydqs"; depends=[GenomicRanges]; }; - OmicsLonDA = derive2 { name="OmicsLonDA"; version="1.10.0"; sha256="1vdnpsbpm4zyc17nah5qnlw66bihc7svqvbwgbxmyfp84c2vbxjy"; depends=[BiocGenerics BiocParallel ggplot2 gss plyr pracma SummarizedExperiment zoo]; }; - Omixer = derive2 { name="Omixer"; version="1.4.0"; sha256="1pdsxcih642csqga7wy93bbhib2v08pywa8aw67zy7p62hvrxwim"; depends=[dplyr forcats ggplot2 gridExtra magrittr readr stringr tibble tidyselect]; }; - OmnipathR = derive2 { name="OmnipathR"; version="3.2.8"; sha256="0vr16ar3rbjsfw4qz2g86lbhvmqwgq0vcahc6vrc4d9rdjxwg6sb"; depends=[checkmate crayon curl digest dplyr httr igraph jsonlite later logger magrittr progress purrr rappdirs readr readxl rlang stringr tibble tidyr tidyselect xml2 yaml]; }; - OncoScore = derive2 { name="OncoScore"; version="1.22.0"; sha256="0pva48qjbxibgk2wxpaxr4xfq9i8dxbml418wx2nrjj20dn2dhcv"; depends=[biomaRt]; }; - OncoSimulR = derive2 { name="OncoSimulR"; version="3.2.0"; sha256="0dcx1qg42pxlcdpl07f53zkk32qpa8hd7fzdz5acvq3zm8yjmhlk"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr stringr]; }; - OpenStats = derive2 { name="OpenStats"; version="1.6.0"; sha256="17gvfvii7z8w9l6w5p0i05374d6sw704w627fnasbrcmkfqnvwka"; depends=[AICcmodavg car Hmisc jsonlite knitr MASS nlme rlist summarytools]; }; - OrderedList = derive2 { name="OrderedList"; version="1.66.0"; sha256="14js4l8airvya3yzrlkk5wz68nr454237bppfpv6b0kjyink8cli"; depends=[Biobase twilight]; }; - Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.22.1"; sha256="01fdwcvi854jdxhj07l6cbnc0f7gnh1pwl7kpjdahbqg6mmfhd0g"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang RSQLite S4Vectors tibble]; }; - OrganismDbi = derive2 { name="OrganismDbi"; version="1.36.0"; sha256="0zp6x2iqhn9s3xp07yilnr6hn73acvkdai5xip4iiwjdlnfffj83"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; - Oscope = derive2 { name="Oscope"; version="1.24.0"; sha256="10aw7f3flvn3nvnzbrya2655c3g56md37ry4q2zl8hyrv5h3p0v2"; depends=[BiocParallel cluster EBSeq testthat]; }; - PAA = derive2 { name="PAA"; version="1.28.0"; sha256="1hpgskzzbn4rq4dh29nzv68kz40l2mj8mfbxpgbb3icd143jwiyf"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; - PADOG = derive2 { name="PADOG"; version="1.36.0"; sha256="1ya2wky2md4i8dh0zhnsmz53wjxk2l4633a6vsi0z5jkz2p8c3ym"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGGdzPathwaysGEO KEGGREST limma nlme]; }; - PAIRADISE = derive2 { name="PAIRADISE"; version="1.10.0"; sha256="1xsgmi3ddjwg403mrjpq5c23zy879aqrcxmlh48a89zsdic921di"; depends=[abind BiocParallel nloptr S4Vectors SummarizedExperiment]; }; - PANR = derive2 { name="PANR"; version="1.40.0"; sha256="108axql2iwgbjl7m41ydi8v7b76dg6xf9c0wfz1fjxwdnngd575q"; depends=[igraph MASS pvclust RedeR]; }; - PAST = derive2 { name="PAST"; version="1.10.0"; sha256="1mvv0jggvhlacx6lqag71ypi2vqbgghg1xdi82s54626ry66vj0d"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 iterators qvalue rlang rtracklayer S4Vectors]; }; - PCAN = derive2 { name="PCAN"; version="1.22.0"; sha256="0fh5pghvh93pyq5k717qjzi527687pb32glvj51fzx9ykwcxl488"; depends=[BiocParallel]; }; - PCAtools = derive2 { name="PCAtools"; version="2.6.0"; sha256="10kfhsxhsjpzal3yvcqg769h5fz99cqqjq217cj9jip3jfh2m2h4"; depends=[beachmat BH BiocParallel BiocSingular cowplot DelayedArray DelayedMatrixStats dqrng ggplot2 ggrepel lattice Matrix Rcpp reshape2]; }; - PDATK = derive2 { name="PDATK"; version="1.2.0"; sha256="0nwz3fn6ykdpa8qmkiq2acv2imckk2ml8ayma2mcbjhrd9ff7m7f"; depends=[BiocGenerics BiocParallel caret clusterRepro ConsensusClusterPlus CoreGx data_table dplyr genefu ggplot2 ggplotify igraph MatrixGenerics matrixStats MultiAssayExperiment piano plyr pROC RColorBrewer reportROC rlang S4Vectors scales SummarizedExperiment survcomp survival survminer switchBox verification]; }; - PECA = derive2 { name="PECA"; version="1.30.0"; sha256="19g1qcqvpkli0jvhl2k4h9cwvlzh15spyhkqwv0h8fai45jnm7xy"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; - PERFect = derive2 { name="PERFect"; version="1.8.0"; sha256="1daayhrvh0lk6drmnmmanry8wb8p3rkhh00zymzgncl7n6bv3dql"; depends=[fitdistrplus ggplot2 Matrix phyloseq psych sn zoo]; }; - PFP = derive2 { name="PFP"; version="1.2.0"; sha256="1h80wn6jzib6nxrvva7zba5sw8yd2fv6ncm8zmp019inajjcgn1i"; depends=[clusterProfiler ggplot2 graph igraph KEGGgraph magrittr plyr tidyr]; }; - PICS = derive2 { name="PICS"; version="2.38.0"; sha256="16i782zz0j2djypdm8zqlag6wfac9xiq232kbhci061604npv1ih"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools]; }; - PING = derive2 { name="PING"; version="2.38.0"; sha256="0nd5l1s211qyyrws4k5z45v483cxi6i1fazkx98bhnvfp5fb4mz1"; depends=[BiocGenerics BSgenome fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; - PLPE = derive2 { name="PLPE"; version="1.54.0"; sha256="1njzm736b6lvh34hh58zbdm1ixgwmjk58dr916sda5d15bbpgqrf"; depends=[Biobase LPE MASS]; }; - POMA = derive2 { name="POMA"; version="1.4.0"; sha256="11ihqijqys6yd2ns99892dyi677v1d5vv10w99n0ka1821i9jcsb"; depends=[broom caret clisymbols ComplexHeatmap crayon dplyr e1071 ggcorrplot ggplot2 ggraph ggrepel glasso glmnet impute knitr limma magrittr mixOmics MSnbase patchwork qpdf randomForest RankProd rmarkdown tibble tidyr vegan]; }; - POWSC = derive2 { name="POWSC"; version="1.2.0"; sha256="159m2ds42dnvx9f2w2g9y4avjwq6n2fm4fq7v6rbyynf8hp4hwnw"; depends=[Biobase ggplot2 limma MAST pheatmap RColorBrewer SingleCellExperiment SummarizedExperiment]; }; - PPInfer = derive2 { name="PPInfer"; version="1.20.4"; sha256="06l0qifg0swbfjplqf4gvczadax7c47y3b5fwd1rbggc1q0pn3pb"; depends=[biomaRt fgsea ggplot2 httr igraph kernlab STRINGdb yeastExpData]; }; - PREDA = derive2 { name="PREDA"; version="1.40.0"; sha256="0435857cg30410w1iqpqd15nwn9x43axw0n2w6pv2jwcxdn58gjj"; depends=[annotate Biobase lokern multtest]; }; - PROMISE = derive2 { name="PROMISE"; version="1.46.0"; sha256="1pajvwr89jh7nn2myv5y24xk2k1vl6zs52lrla70v25xxhpmwwkk"; depends=[Biobase GSEABase]; }; - PROPER = derive2 { name="PROPER"; version="1.26.0"; sha256="19rn1vad18sfdwgnyh9fv5hh70h4pvsy32rac393hd39wqqhmsl0"; depends=[edgeR]; }; - PROPS = derive2 { name="PROPS"; version="1.16.0"; sha256="19m02qcgnq8kgi17l1v70k5kpdy696dsv9gvr60w4z1dgk1ghw4s"; depends=[Biobase bnlearn reshape2 sva]; }; - PROcess = derive2 { name="PROcess"; version="1.70.0"; sha256="116x99z4nq895x9np6mhm6rrc3agg2ni6rim6aargda7c6i5v8rm"; depends=[Icens]; }; - PSEA = derive2 { name="PSEA"; version="1.28.0"; sha256="14whd775m4pvf0mggrdw0jyz5wrhqdyj647qvrnkjnvnfkhivh1a"; depends=[Biobase MASS]; }; - PSICQUIC = derive2 { name="PSICQUIC"; version="1.32.0"; sha256="0zqz9jyca75ahmkds61cl03i68n3v25n7nmfwc9niv23ikp18pj4"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; - PWMEnrich = derive2 { name="PWMEnrich"; version="4.30.0"; sha256="16nphxfmfrxpf6w4xccpr132a7jz34nhjv0rg58n6n7kfsf9h4k7"; depends=[BiocGenerics Biostrings evd gdata S4Vectors seqLogo]; }; - PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.22.0"; sha256="0rhx2jc5kc9bl00v16frh8b4075n0jqn4s37pkvqp3ypcbqws32d"; depends=[igraph jsonlite pcaMethods shiny]; }; - Path2PPI = derive2 { name="Path2PPI"; version="1.24.0"; sha256="07a0z9islqnla01pmqni4a3l90iq1c4bwhycnarmdhhrcq4ms2v9"; depends=[igraph]; }; - PathNet = derive2 { name="PathNet"; version="1.34.0"; sha256="1syd5k54jj74f39z871a9xc5snslmsv6h9f0lacpf8chcpbs47hy"; depends=[]; }; - PathoStat = derive2 { name="PathoStat"; version="1.20.0"; sha256="0vaidkwnny60m0qpkraz6cnzmwm344niwk325dyqyc348r99bk1s"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; - PeacoQC = derive2 { name="PeacoQC"; version="1.4.0"; sha256="1szxqn2rz9qnc9k88gzmvndiwlch8b4ahxspnyf21xhrkvdqys1j"; depends=[circlize ComplexHeatmap flowCore flowWorkspace ggplot2 gridExtra plyr]; }; - PepsNMR = derive2 { name="PepsNMR"; version="1.12.0"; sha256="05m1bjk6xpm4k05g4ww7zhhv93l56k8qq78lirqi9gsnj05a9898"; depends=[ggplot2 gridExtra Matrix matrixStats ptw reshape2]; }; - PhIPData = derive2 { name="PhIPData"; version="1.2.0"; sha256="1jlbwlj47raymg1njgg7wfl81apc5dn0x2plrrhyi1rrdrjdzgpp"; depends=[BiocGenerics cli edgeR GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - PharmacoGx = derive2 { name="PharmacoGx"; version="2.6.0"; sha256="1rglk12ng959sqkfgv8q7sv0mkdsvwkn8dgb0pv4xi0kcl03frgs"; depends=[Biobase BiocGenerics BiocParallel caTools checkmate CoreGx data_table downloader ggplot2 glue jsonlite magicaxis MultiAssayExperiment RColorBrewer reshape2 S4Vectors SummarizedExperiment]; }; - PhenStat = derive2 { name="PhenStat"; version="2.30.0"; sha256="0b423kkbyyjk4ns4pdwh1lag2k0v7wn17h4l4aca3zkjrsf5522n"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; - PhenoGeneRanker = derive2 { name="PhenoGeneRanker"; version="1.2.0"; sha256="1x5fbipgsiz2ipg9yh2r8wr8w1s6q01vq4149gjjxgx779xz250n"; depends=[doParallel dplyr foreach igraph Matrix]; }; - PhosR = derive2 { name="PhosR"; version="1.4.0"; sha256="0ssfvc9qqj25j48srjjissq034f7giddx45w236yssaynw3ykslr"; depends=[BiocGenerics circlize dendextend dplyr e1071 GGally ggdendro ggplot2 ggpubr ggtext igraph limma network pcaMethods pheatmap preprocessCore RColorBrewer reshape2 rlang ruv S4Vectors SummarizedExperiment tidyr]; }; - PhyloProfile = derive2 { name="PhyloProfile"; version="1.8.6"; sha256="157g1xj5iwyy9zmgd26jwws2qwln79pkn2chg6rmj54kslk1shyg"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinyFiles shinyjs xml2 yaml zoo]; }; - Pi = derive2 { name="Pi"; version="2.6.0"; sha256="14bpqzwx59shx5467nj0g6wj58qh9zqhy1i9l1n1gk7wd52ig5ql"; depends=[BiocGenerics caret dnet dplyr GenomeInfoDb GenomicRanges ggnetwork ggplot2 ggrepel glmnet igraph IRanges lattice MASS Matrix osfr plot3D purrr randomForest RCircos readr ROCR scales supraHex tibble tidyr]; }; - Pigengene = derive2 { name="Pigengene"; version="1.20.0"; sha256="1rdz2d5fy6gpdvzv5vfgxngwkag062i6bvvjqkyflabn0yijjpmi"; depends=[BiocStyle bnlearn C50 clusterProfiler DBI dplyr gdata ggplot2 GO_db graph impute MASS matrixStats openxlsx partykit pheatmap preprocessCore ReactomePA Rgraphviz WGCNA]; }; - PloGO2 = derive2 { name="PloGO2"; version="1.6.0"; sha256="0i5b7nfifjx1ywvdq4mhvy3wzdg8cqdcc7sw1awsz9xfnrjnhcdp"; depends=[GO_db GOstats httr lattice openxlsx xtable]; }; - PoDCall = derive2 { name="PoDCall"; version="1.2.0"; sha256="0hwhnk5iyyz5fddms237j6iaim97nw1z1qxbsic9l7z2bv1qz8g1"; depends=[diptest DT ggplot2 gridExtra LaplacesDemon mclust purrr readr rlist shiny shinyjs]; }; - PoTRA = derive2 { name="PoTRA"; version="1.10.0"; sha256="0qqr9mjqhfk76pnpzd0hzxw180swqr9b1dhakj65lha5mha4vgid"; depends=[BiocGenerics graph graphite igraph org_Hs_eg_db]; }; - PrInCE = derive2 { name="PrInCE"; version="1.10.0"; sha256="09fvk96zxj0bglbs8kgnbg3xxri2pial14g4kcsynaac0m2lmdyk"; depends=[Biobase dplyr forecast Hmisc LiblineaR magrittr MSnbase naivebayes progress purrr ranger Rdpack robustbase speedglm tester tidyr]; }; - PrecisionTrialDrawer = derive2 { name="PrecisionTrialDrawer"; version="1.10.0"; sha256="1zr1jpbnjjrgrbm99n8182akp7xg75bf54gy0wc66r7dxj4vivfl"; depends=[BiocParallel biomaRt brglm cgdsr data_table DT GenomicRanges ggplot2 ggrepel googleVis httr IRanges jsonlite LowMACAAnnotation magrittr matrixStats RColorBrewer reshape2 S4Vectors shiny shinyBS stringr XML]; }; - Prostar = derive2 { name="Prostar"; version="1.26.4"; sha256="0488x3dsbfydymc7bvh70v77rc3gfqkc56ykvfalrzl85r9zmlk0"; depends=[BiocManager colourpicker DAPAR DAPARdata data_table DT future highcharter htmlwidgets later promises R_utils rclipboard rhandsontable sass shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes shinyTree shinyWidgets tibble webshot XML]; }; - ProtGenerics = derive2 { name="ProtGenerics"; version="1.26.0"; sha256="0x53pk7h47gjza1q5pz7jb1qqhwa9z2rr5fr61qc92zl3mqk57m0"; depends=[]; }; - ProteoDisco = derive2 { name="ProteoDisco"; version="1.0.0"; sha256="14rizjlwf87qhi929b4vafjzvx7p112bsq0zb2wppxh3m7izs4zp"; depends=[BiocGenerics BiocParallel Biostrings checkmate cleaver dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges ParallelLogger plyr rlang S4Vectors tibble tidyr VariantAnnotation XVector]; }; - ProteoMM = derive2 { name="ProteoMM"; version="1.12.0"; sha256="1y7w6rs11kclh5nipnrh02ny12bgf2rkb2dghqcybl80s6r8m6bm"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; - ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.24.0"; sha256="0qs5hbx7pww7qxxaimp2xqvs3lwcd41ndls0xcvvlk7pnp4i4sk8"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDb MSnbase mzR RCurl]; }; - PubScore = derive2 { name="PubScore"; version="1.6.0"; sha256="0b68pzz9iav2d18w6prpp4h6623mfm4qkp36mmr7jqd1ghgj4nc7"; depends=[dplyr ggplot2 ggrepel igraph intergraph network progress rentrez sna]; }; - PureCN = derive2 { name="PureCN"; version="2.0.2"; sha256="0hc752ylpd30hjicj76hqf582akdp5ayh1g2rhvc14v2pin452w8"; depends=[Biobase BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix mclust RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; - Pviz = derive2 { name="Pviz"; version="1.28.0"; sha256="0n5bgnhngb38fgrjbibjs7wvmrglrlsr62c27y7k7rqckyrpv21l"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; - QDNAseq = derive2 { name="QDNAseq"; version="1.30.0"; sha256="1sza9br8agpdz1k9fn5wisir44sj8v0rk4wbx35d2c2kp9q70pqj"; depends=[Biobase CGHbase CGHcall DNAcopy future_apply GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; - QFeatures = derive2 { name="QFeatures"; version="1.4.0"; sha256="1rvdfs50hi4a6i9iah916c0yxl31yljs4k62mr839bi162zg4pj1"; depends=[AnnotationFilter Biobase BiocGenerics igraph IRanges lazyeval MsCoreUtils MultiAssayExperiment plotly ProtGenerics S4Vectors SummarizedExperiment]; }; - QSutils = derive2 { name="QSutils"; version="1.12.0"; sha256="1qcxarsk9625xsms0fpmlkrpzfbj4rnd8m03k6h1n08imj6x8z4d"; depends=[ape BiocGenerics Biostrings psych]; }; - QUBIC = derive2 { name="QUBIC"; version="1.22.0"; sha256="0arhrnn9mfcb3jppkxvv4a1g9rpziv53y9scin2gsk1qrqk17gfa"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; - Qtlizer = derive2 { name="Qtlizer"; version="1.8.1"; sha256="0jbk7jmxvxnya2myh0i6syii8cxk61fx5j431vk9rq4dcdylzxcs"; depends=[curl GenomicRanges httr stringi]; }; - QuartPAC = derive2 { name="QuartPAC"; version="1.26.0"; sha256="01v4icdwfx9l1md2wxcwh3qn8m7lc133slwdlssa0f1h6r2f7w0g"; depends=[data_table GraphPAC iPAC SpacePAC]; }; - QuasR = derive2 { name="QuasR"; version="1.34.0"; sha256="0d292xgaq8d3cdpa9anabda03lis46xc29iw9c5k5i3sj7dcr4g5"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rhtslib Rsamtools rtracklayer S4Vectors ShortRead]; }; - QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.28.0"; sha256="0ijig5jmh5b1dzsmibzij1hhdn4b3nz6rvjx9rdvk0rhs7nhh5c1"; depends=[dplyr Rcpp yaml]; }; - R3CPET = derive2 { name="R3CPET"; version="1.26.0"; sha256="1i0jjkbnp8jc9lbbx615v7haz5dppa72fqqyps4rfqx6wbc4pizs"; depends=[BiocGenerics clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; - R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.44.0"; sha256="1y60w0mbzv2hxs0lfx1sicn7wp1j9mmqw8pgprrf5z6nzcsc3zyl"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; - R4RNA = derive2 { name="R4RNA"; version="1.22.0"; sha256="1gf536j9nw8agzi6bm4dmadndg9ibkfzk0s7l5r2ahq5lsqsj6v4"; depends=[Biostrings]; }; - RBGL = derive2 { name="RBGL"; version="1.70.0"; sha256="0k2p1lwdvix4n742a97lv988rx5kg8cvcmzgyzj0538n1nz0lxk0"; depends=[BH graph]; }; - RBM = derive2 { name="RBM"; version="1.26.0"; sha256="0af3z0ps14mavra63xdqwbjbgq6kk9qjidahac2dbbc9ydcpdafq"; depends=[limma marray]; }; - RBioinf = derive2 { name="RBioinf"; version="1.54.0"; sha256="08ydadi3xx3kgjdi4d686ag70wnw4xmn9c9jfpbi192zz1niy1nk"; depends=[graph]; }; - RCAS = derive2 { name="RCAS"; version="1.20.0"; sha256="02zwz7c8ljmdcfxj54xns0a31sj616x63q63wxhxa1nb4dhgmvk7"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gprofiler2 IRanges knitr pbapply pheatmap plotly plotrix proxy ranger rmarkdown RSQLite rtracklayer S4Vectors]; }; - RCASPAR = derive2 { name="RCASPAR"; version="1.40.0"; sha256="0iw17mh880x1pjqs5ffjlc8xicy8qrks8yigb1aiyn4xd00ihf1s"; depends=[]; }; - RCM = derive2 { name="RCM"; version="1.10.0"; sha256="082qnzy5q3k5g2qazralj4jwhrdxm1y9xc8dxry5d4l6l6vf77wp"; depends=[alabama edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries VGAM]; }; - RCSL = derive2 { name="RCSL"; version="1.2.0"; sha256="01v45b42g0gvhz6h0p1j4865l2cm185ai40bf1fcvjd8747850h4"; depends=[ggplot2 igraph NbClust pracma RcppAnnoy Rtsne umap]; }; - RCy3 = derive2 { name="RCy3"; version="2.14.2"; sha256="13yjr01svgz36g5irr8jg1c3zpwwb9q424qj75k8nrf2zrz72l7w"; depends=[base64enc base64url BiocGenerics fs glue graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO uchardet uuid XML]; }; - RCyjs = derive2 { name="RCyjs"; version="2.16.0"; sha256="1xb98gyf847sy5ijv2ka1vsvz64n6fi356qmcgm4k1qhz1jizm6z"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; - RDRToolbox = derive2 { name="RDRToolbox"; version="1.44.0"; sha256="1mlfzvn6imnkj2mrma6nr5cm0qdxjca7vy6hlaidicvwn3jz4129"; depends=[MASS rgl]; }; - REBET = derive2 { name="REBET"; version="1.12.0"; sha256="19hsykk770jyrvd5lbaybggs4j1f1rnrbcq2mb0cz8w288lh4i5p"; depends=[ASSET]; }; - REDseq = derive2 { name="REDseq"; version="1.40.0"; sha256="106dx160nzjlxfg76v9g7f1rjpiwfrsab7639x94s62v2g51x5l4"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; - REMP = derive2 { name="REMP"; version="1.18.0"; sha256="0n3ymwgq2bfix6qjgakib08hs0dw2cq838l79d3db3dxjaix8rs2"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome caret doParallel foreach GenomeInfoDb GenomicRanges impute IRanges iterators kernlab minfi org_Hs_eg_db ranger readr rtracklayer S4Vectors settings SummarizedExperiment]; }; - RGMQL = derive2 { name="RGMQL"; version="1.14.1"; sha256="11s4hswxg180w1i92ps0fr0jfw956hpdbaimwrrzmvvlc4s3qwhq"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; - RGSEA = derive2 { name="RGSEA"; version="1.28.0"; sha256="1bv8kg3npac1qlrj6mpx6f89avjqfp937w99f7iw60yqin8psa89"; depends=[BiocGenerics]; }; - RGalaxy = derive2 { name="RGalaxy"; version="1.38.0"; sha256="0vfsn8cj5c8n58ra1qz85gwmm1747lm3xdz17m20f73g8q78nymd"; depends=[Biobase BiocGenerics optparse roxygen2 XML]; }; - RGraph2js = derive2 { name="RGraph2js"; version="1.22.0"; sha256="16pim49wls085ahaqac26ah7mx2a6ww9gf7s1rdsikr56xcnkzsb"; depends=[digest graph rjson whisker]; }; - RIPAT = derive2 { name="RIPAT"; version="1.4.0"; sha256="1kkavimbx8nq7qnddj363kvsv08sckk8j136xlh48fma0r8h3n43"; depends=[biomaRt GenomicRanges ggplot2 IRanges karyoploteR openxlsx plyr regioneR rtracklayer stringr]; }; - RITAN = derive2 { name="RITAN"; version="1.18.0"; sha256="0x7k4lyww6d6hz0x9f8bqygcmga6ymsfyqp5cn9pmsbc4wig1kbm"; depends=[BgeeDB dynamicTreeCut ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; - RIVER = derive2 { name="RIVER"; version="1.18.0"; sha256="141qk3bl9ksc3sxpdfja8siw22njmdaic4zap1pm9nk6gssd9g1c"; depends=[Biobase ggplot2 glmnet pROC]; }; - RImmPort = derive2 { name="RImmPort"; version="1.22.0"; sha256="0fm29zlj8qllqi02h20l4ipf9ppqmajkk9mc9zr4nbx6pspxmk4q"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; - RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.18.0"; sha256="0k4dk8m1pmgflyrwa8szkbfwqqrz8b0xnnf1df200npyrw49mb22"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; - RLMM = derive2 { name="RLMM"; version="1.56.0"; sha256="08jwzj8k1r36xryy515x67lkb6w4czgsdr05ip370m8f1gsm9vrl"; depends=[MASS]; }; - RLSeq = derive2 { name="RLSeq"; version="1.0.0"; sha256="07llq48pnk62jzh4s0ars3j9grfkc6ii4mhwimvdviiskvk8j32g"; depends=[AnnotationHub aws_s3 callr caretEnsemble circlize ComplexHeatmap dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggplotify ggprism pheatmap RColorBrewer regioneR RLHub rtracklayer valr VennDiagram]; }; - RLassoCox = derive2 { name="RLassoCox"; version="1.2.0"; sha256="0df7mrf8wb4zvp5vb2j954wwb8b7xsygilc57s6shkhspappkasz"; depends=[glmnet igraph Matrix survival]; }; - RMassBank = derive2 { name="RMassBank"; version="3.4.0"; sha256="1awn7yb4ypnah038hh4my2v42ajsfi1spaljfzwpm520y5dqxlnz"; depends=[assertthat Biobase digest enviPat httr logger MSnbase mzR rcdk Rcpp RCurl rjson S4Vectors XML yaml]; }; - RNAAgeCalc = derive2 { name="RNAAgeCalc"; version="1.6.0"; sha256="0cqghkz6vqlbci4g1m3km9l20w1dfggag718bxisnm49p21bnzca"; depends=[AnnotationDbi ggplot2 impute org_Hs_eg_db recount SummarizedExperiment]; }; - RNASeqPower = derive2 { name="RNASeqPower"; version="1.34.0"; sha256="0hma29rp0349rmfpdrchkpivq8xqzlkrxigfc25ypx05ii1phkxf"; depends=[]; }; - RNASeqR = derive2 { name="RNASeqR"; version="1.12.0"; sha256="1f2rrk4lb8mawgy6pzkpdmjp85pl23mb89b45ay54jp28j16dgr5"; depends=[ballgown Biostrings clusterProfiler corrplot DESeq2 DOSE edgeR factoextra FactoMineR ggplot2 gridExtra org_Hs_eg_db org_Sc_sgd_db pathview PerformanceAnalytics pheatmap rafalib reshape2 reticulate Rsamtools stringr systemPipeR systemPipeRdata]; }; - RNAdecay = derive2 { name="RNAdecay"; version="1.14.0"; sha256="07x1s87q3w4v3ma96hr5jx08p3yjqcab2cnr44j3jvc5c1pzpiiq"; depends=[ggplot2 gplots nloptr scales TMB]; }; - RNAinteract = derive2 { name="RNAinteract"; version="1.42.0"; sha256="0nr9f6lrbyclmpnsnbhcd2y5qh6cp5vzq1gkylq1lb99pawhr9qi"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; - RNAmodR = derive2 { name="RNAmodR"; version="1.8.0"; sha256="00spb46rx8bl93pc3v7mkfbrq7bvq8sfnqym7vs7kymv36a8g42y"; depends=[BiocGenerics BiocParallel Biostrings BSgenome colorRamps GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges matrixStats Modstrings RColorBrewer reshape2 ROCR Rsamtools rtracklayer S4Vectors]; }; - RNAmodR_AlkAnilineSeq = derive2 { name="RNAmodR.AlkAnilineSeq"; version="1.8.0"; sha256="17cj2834fl2yfkng5776cbahjfirfl0lggfcawa3gsxgjclnw3lv"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; - RNAmodR_ML = derive2 { name="RNAmodR.ML"; version="1.8.0"; sha256="1dzcbmk416dzl0isbkn3sjrhmb0rkdd6z071iwinf35iyza16y2i"; depends=[BiocGenerics GenomicRanges IRanges ranger RNAmodR S4Vectors]; }; - RNAmodR_RiboMethSeq = derive2 { name="RNAmodR.RiboMethSeq"; version="1.8.0"; sha256="1sspi9ng7a6mzkn0m1p94vsd6v0ymclw320gi7awjbfdvpci20sw"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; - RNAsense = derive2 { name="RNAsense"; version="1.8.0"; sha256="06mg6cpra1xx9yq4ic8qr5ixz1s21af9wv1rm07ywhwqnq9pbgr7"; depends=[ggplot2 NBPSeq qvalue SummarizedExperiment]; }; - ROC = derive2 { name="ROC"; version="1.70.0"; sha256="1mgxpv5p6gnv04wzkcryrg5as5xrxvlqlkkcbv0k1bx9y6ykijy9"; depends=[knitr]; }; - ROCpAI = derive2 { name="ROCpAI"; version="1.6.0"; sha256="1ims2ppbbwrp1wzg917jr9g08zbbhj38m1prj1yk9ix3inndbpdi"; depends=[boot fission knitr SummarizedExperiment]; }; - ROSeq = derive2 { name="ROSeq"; version="1.6.0"; sha256="077r63i0j47dxh4mdsx661bv9kavgmgmiy5a522cxwh5b37pkaxc"; depends=[edgeR limma pbmcapply]; }; - ROTS = derive2 { name="ROTS"; version="1.22.0"; sha256="0qhy984y83a3nf4zw54rasw3vn932q4zb3gljifkw701jnrzqmki"; depends=[Biobase Rcpp]; }; - ROntoTools = derive2 { name="ROntoTools"; version="2.22.0"; sha256="0h88d8wwqnv6alrxd7j2nzr8drqdkfl8b8sgy4wzclyin2qy71ln"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; - RPA = derive2 { name="RPA"; version="1.50.0"; sha256="1ikz7l119n644hv6hhdykdsh6kahcigcwi1j8sm0cksvrbblsp25"; depends=[affy BiocGenerics BiocStyle phyloseq rmarkdown]; }; - RProtoBufLib = derive2 { name="RProtoBufLib"; version="2.6.0"; sha256="04qlhbhdchpr35rdc6jc3y8fy6znnfrdlsb8am04agbrvpjgrx10"; depends=[]; }; - RRHO = derive2 { name="RRHO"; version="1.34.0"; sha256="03r18j91xy7gjzpgi9mpdrv99an8422y9mxll5fqszllikivfkvz"; depends=[VennDiagram]; }; - RSVSim = derive2 { name="RSVSim"; version="1.34.0"; sha256="19adi8vyjyz5g7fcr77ag2wn745qzslps137r2wa2ah7175ny6rr"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; - RSeqAn = derive2 { name="RSeqAn"; version="1.14.0"; sha256="0x1w1bbz5395g8m51avkhb7gswjxl93cq9xd5mh3f8b6mybahbwy"; depends=[Rcpp]; }; - RTCA = derive2 { name="RTCA"; version="1.46.0"; sha256="142v1938ba077v26kassym5jdz4zai1pwbql9zpibvzxgg1r7vr4"; depends=[Biobase gtools RColorBrewer]; }; - RTCGA = derive2 { name="RTCGA"; version="1.24.0"; sha256="1h904df27mcqh8ic0wb5v8r4afzznfb8ihibcs0s8zvsnlqa9jrg"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; }; - RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.24.0"; sha256="1hg9i1z27i3l49vc3k4dda2qr93rqdjla8raxv7j1flbs9ximh77"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges httr limma RaggedExperiment RCircos RCurl RJSONIO S4Vectors stringr SummarizedExperiment survival TCGAutils XML]; }; - RTN = derive2 { name="RTN"; version="2.18.0"; sha256="0yjbvcaci77xbxkl35i03vdmd2ascaphv2lpagcib4wlj2qsg57y"; depends=[car data_table igraph IRanges limma minet mixtools pheatmap pwr RedeR S4Vectors snow SummarizedExperiment viper]; }; - RTNduals = derive2 { name="RTNduals"; version="1.18.0"; sha256="1h646yysi879v1w60sc1f6wckyz788cq2psyihnp873k001yzgv9"; depends=[RTN]; }; - RTNsurvival = derive2 { name="RTNsurvival"; version="1.18.0"; sha256="158ffqrysprfx5g5m9mc645bjcpdjr3cksl521jc4ak401va7l7l"; depends=[data_table dunn_test egg ggplot2 pheatmap RColorBrewer RTN RTNduals scales survival]; }; - RTopper = derive2 { name="RTopper"; version="1.40.1"; sha256="1mdp498x90rvlq8v1mfs067r4vprliiqf30f3smqh1b2bljcfpcc"; depends=[Biobase limma multtest]; }; - RUVSeq = derive2 { name="RUVSeq"; version="1.28.0"; sha256="1a19klscykdgsd7izcxyr45ml7g0gpdj65gvbaw124mal2p4zi9q"; depends=[Biobase EDASeq edgeR MASS]; }; - RUVcorr = derive2 { name="RUVcorr"; version="1.26.0"; sha256="0va76nl1j4f5cs1d7cxz2gx7v80r42ia178c9nb2fb91lmahalsn"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; - RUVnormalize = derive2 { name="RUVnormalize"; version="1.28.0"; sha256="1yqnp1fpln7g4h20fikr9hh7x80s93pdip9g612m0djp5p2xlvlx"; depends=[Biobase RUVnormalizeData]; }; - RVS = derive2 { name="RVS"; version="1.16.0"; sha256="0m44bdyi1fnmgymyl7yb875930ydpwaqgc5dsx2fyqngnj7l8fh2"; depends=[GENLIB gRain kinship2 snpStats]; }; - RadioGx = derive2 { name="RadioGx"; version="1.4.0"; sha256="1fnfsx72lfs9hjxnvcyh500fxfvvxj95krpvsx9bv0n9z14j8b9v"; depends=[assertthat Biobase BiocParallel caTools CoreGx downloader magicaxis matrixStats RColorBrewer reshape2 S4Vectors scales SummarizedExperiment]; }; - RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.18.0"; sha256="1ml68mi61wr2lk3zq1bbpb567jf0mybs76384qzml35n89a0x6ja"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors SummarizedExperiment]; }; - RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.14.0"; sha256="01aqp4yxph21vv2jmkx1lv2kxpvyqv83pp7r3xynilp4kbfjvr3q"; depends=[dnet igraph Matrix]; }; - RankProd = derive2 { name="RankProd"; version="3.20.0"; sha256="1g97z1dl1m9f7zx2lrs66rl2arcc7fmfvzmash2vz0362m2isj5i"; depends=[gmp Rmpfr]; }; - RareVariantVis = derive2 { name="RareVariantVis"; version="2.22.0"; sha256="1pvssz6akpvl0kc81dg9l4n033fb4py4wrp7rmb16g1w2mwz27aw"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - RbcBook1 = derive2 { name="RbcBook1"; version="1.62.0"; sha256="1752107f8xwra0rskz1r0661k5vb39a72lx0rpb9yzk8nvlvrfj0"; depends=[Biobase graph rpart]; }; - Rbec = derive2 { name="Rbec"; version="1.2.0"; sha256="0gmd9hj4vhg0bgbd3j72hm02n2cbdz35r40kkh6r872bhbi8fjpd"; depends=[dada2 doParallel foreach ggplot2 Rcpp readr]; }; - Rbowtie = derive2 { name="Rbowtie"; version="1.34.0"; sha256="0ardmryx6ac7v6n900a1klrrldvbmh7bxvy8ldz8rwid19h29ikr"; depends=[]; }; - Rbowtie2 = derive2 { name="Rbowtie2"; version="2.0.0"; sha256="0xpvrx2ak9x913sym4l46ycwbnmpcdwb3bf3dfd2gsp0krv8vh1x"; depends=[magrittr Rsamtools]; }; - Rcade = derive2 { name="Rcade"; version="1.36.0"; sha256="0drggwwnjvirnzg8g79ba784w57zbhppp1f40d3gql0f7hajhwxs"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; }; - RcisTarget = derive2 { name="RcisTarget"; version="1.14.0"; sha256="1qarr7xd71kz1haccj65x7sc7pc4v6xpqcfa3rkyp2bk240gigi7"; depends=[arrow AUCell BiocGenerics data_table dplyr feather GenomeInfoDb GenomicRanges GSEABase R_utils SummarizedExperiment tibble]; }; - Rcpi = derive2 { name="Rcpi"; version="1.30.0"; sha256="0hn31hfyygnz6dc78m5xi5ivgpr048a292si1h4pxnbz6ldwfqb8"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; }; - Rcwl = derive2 { name="Rcwl"; version="1.10.0"; sha256="1hz7r8qdcvxpqhfq9fak9pydmxs97swn1wlh2dg2k2rd64msj3qy"; depends=[basilisk batchtools BiocParallel codetools DiagrammeR R_utils S4Vectors shiny yaml]; }; - RcwlPipelines = derive2 { name="RcwlPipelines"; version="1.10.0"; sha256="0yzihadrf5rx1jj33b1fa9a3nffw7nv84fh70pb5p6g15v7wm5k0"; depends=[BiocFileCache git2r httr rappdirs Rcwl S4Vectors]; }; - Rdisop = derive2 { name="Rdisop"; version="1.54.0"; sha256="1v3k6dp9q4q23vcpak01cdl353q66y88667dcq7cv020nw9nf1pq"; depends=[Rcpp]; }; - ReQON = derive2 { name="ReQON"; version="1.40.0"; sha256="14v79vg3pmpkbzgn8xqd020jdwcs8g57d46bzl23yi3w1rsfbrb1"; depends=[rJava Rsamtools seqbias]; }; - ReactomeContentService4R = derive2 { name="ReactomeContentService4R"; version="1.2.0"; sha256="0qqimr9hfpaiswsf0mly59i64csmjcs8d0vzpavpw147vdpmpixa"; depends=[data_table doParallel foreach httr jsonlite magick]; }; - ReactomeGSA = derive2 { name="ReactomeGSA"; version="1.8.0"; sha256="0ajyl4klp3x95c6mg885ra7ivifj2lpycfidxs7rag30k3rypn31"; depends=[dplyr ggplot2 gplots httr jsonlite progress RColorBrewer tidyr]; }; - ReactomeGraph4R = derive2 { name="ReactomeGraph4R"; version="1.2.0"; sha256="06a7xyx39h7bjnybi0zv4mh3nzkcacylcrfy5f95a5vkh130hzps"; depends=[data_table doParallel foreach getPass jsonlite magrittr neo4r purrr ReactomeContentService4R rlang]; }; - ReactomePA = derive2 { name="ReactomePA"; version="1.38.0"; sha256="1f4kd5cql7knnqaq3ba48kkypw8p60lkfdsnpqxcabdj30gqp55b"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite igraph reactome_db]; }; - ReadqPCR = derive2 { name="ReadqPCR"; version="1.40.0"; sha256="1wfl093waz9qij5y1jv747k3zw61brndy8l8g5bvxz9cg9mfdfvi"; depends=[Biobase]; }; - RedeR = derive2 { name="RedeR"; version="1.42.0"; sha256="02idybdi52z6ilh7sl9slbnsxylydc8h6bdgk159sw3vl5w8lri5"; depends=[igraph]; }; - RefPlus = derive2 { name="RefPlus"; version="1.64.0"; sha256="1z7rllspiccs0ii5g0pfgv1wkhar2svjp2cvkgxb30y1xlfggahr"; depends=[affy affyPLM Biobase preprocessCore]; }; - RegEnrich = derive2 { name="RegEnrich"; version="1.4.0"; sha256="0k9965br3yx5i9smgsfp8bvlgii3a0p5zx8y4r8sygk2br4m9kny"; depends=[BiocParallel BiocSet DESeq2 DOSE dplyr fgsea ggplot2 limma magrittr randomForest reshape2 S4Vectors SummarizedExperiment tibble WGCNA]; }; - RepViz = derive2 { name="RepViz"; version="1.10.0"; sha256="13qyg9z2wfhl68z9280k7272fzfsic4wp14kq160r3y67kc1jz9h"; depends=[biomaRt GenomicRanges IRanges Rsamtools S4Vectors]; }; - Repitools = derive2 { name="Repitools"; version="1.40.0"; sha256="0d4p2qnnfmqfjqjdi9xw9ngjpv0y5hg355kvk9jpccqbw5rqi017"; depends=[BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; - ReportingTools = derive2 { name="ReportingTools"; version="2.34.0"; sha256="06kwf87h84xgswkrm7brmgr9aj1nf6cxp24hrfymkzq2pha5y5j7"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; - ResidualMatrix = derive2 { name="ResidualMatrix"; version="1.4.0"; sha256="0xsn4fm34a7xpkgmx3a1j2xzdaxf2hyla1062wqn04kw0k9y29vg"; depends=[DelayedArray Matrix S4Vectors]; }; - Rfastp = derive2 { name="Rfastp"; version="1.4.0"; sha256="0lxpzjbh8mpyf9d37lns11w6gics42ghy2j90xq3cwmn287x2j4r"; depends=[ggplot2 Rcpp reshape2 Rhtslib rjson zlibbioc]; }; - Rgin = derive2 { name="Rgin"; version="1.14.0"; sha256="1gyvli5dhx5wxy736zvvfvpm7a5sxv2zqpkl3nydq6czvd5xxjxh"; depends=[RcppEigen]; }; - Rgraphviz = derive2 { name="Rgraphviz"; version="2.38.0"; sha256="0fyv1ybpahkwz3fawzxgxfnshi8y7c18262rgdmqwdl5662vv1p7"; depends=[graph]; }; - Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.16.0"; sha256="0yly9s3wdnhd9ci2jxfkql38ibv35yzs38a6g6ashbg1m5kgwd9p"; depends=[]; }; - Rhisat2 = derive2 { name="Rhisat2"; version="1.10.0"; sha256="092rws9vjxgm2jpkbp6ign47zmillyyidnc7ylcbn4zr9j5lwv0y"; depends=[GenomicFeatures GenomicRanges SGSeq]; }; - Rhtslib = derive2 { name="Rhtslib"; version="1.26.0"; sha256="0pwmzwjf6agfp3bq6w8s3piwmzwjdd474qd8zmbzrm772qbadfr4"; depends=[zlibbioc]; }; - RiboCrypt = derive2 { name="RiboCrypt"; version="1.0.0"; sha256="1c8pwql440jy81q2brqacs2mia1xhs29xhi0kkgknknm94m26cd4"; depends=[BiocGenerics BiocParallel Biostrings data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges ORFik plotly rlang]; }; - RiboDiPA = derive2 { name="RiboDiPA"; version="1.2.0"; sha256="14659gpmk4wy68ap08i58vj5blhpczdyqs5hfy9rbzwrrri8k53l"; depends=[BiocFileCache data_table DESeq2 doParallel elitism foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges matrixStats qvalue Rcpp reldist Rsamtools S4Vectors]; }; - RiboProfiling = derive2 { name="RiboProfiling"; version="1.24.0"; sha256="1szlzvm8ggjc40k4z2fxxa2h28g6j9wj2g5aw480v9hgyvvdw5lx"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; - Ringo = derive2 { name="Ringo"; version="1.58.0"; sha256="0bjsyp6gsdgny0jg363z46sihqmv0xka7mzzkv1gjhiyk7zh8gs6"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; - Risa = derive2 { name="Risa"; version="1.36.0"; sha256="0fmdsl86swj1sv6j4g3ljbcxp6xqnnxjpzqabjyzbicl3flmqcyv"; depends=[affy Biobase biocViews Rcpp xcms]; }; - Rmagpie = derive2 { name="Rmagpie"; version="1.50.0"; sha256="0yn1v4z25ifb00xg3mp0ajskv8502yl317pj2j04ax62qny95ykg"; depends=[Biobase e1071 kernlab pamr]; }; - Rmmquant = derive2 { name="Rmmquant"; version="1.12.0"; sha256="0wklqi37jgdfsf26zgfhq0rvb6xvg4v9z197mcwirqp7y1jm8rmm"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - RnBeads = derive2 { name="RnBeads"; version="2.12.2"; sha256="042bh4p567xkwqn0hxqji7mk0lhbh0vxdrrhcpya22yyrs1716d0"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; - RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.4.1"; sha256="1rmzgvkf3vpdpjx792lcgk3j0br5mbp36cb0hzz5y10fn8qxyml8"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; }; - Rnits = derive2 { name="Rnits"; version="1.28.0"; sha256="0wzg0wq0kyarl6s8lmmd6nkqfvvph46bvd4wxh5zy94zqbad7q0b"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; - RpsiXML = derive2 { name="RpsiXML"; version="2.36.0"; sha256="19jc5dhwyy2z1cwbvgvw54v7kkbgh7g0wzy4frxv91zdgaj7wmhy"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; - Rqc = derive2 { name="Rqc"; version="1.28.0"; sha256="0hcxkrfja0gmd8r2llijdvaw2xiiplk037305inimz0qna6w2071"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; - Rsamtools = derive2 { name="Rsamtools"; version="2.10.0"; sha256="0v6b3j45ivd9f04fpfs1vjwby5pi30mf5683bjxim01vi2krj9yh"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; }; - Rsubread = derive2 { name="Rsubread"; version="2.8.2"; sha256="078zcchw9xl6vs2wihzzji349vq0m1a039m86jdlvb7nc3i1imfk"; depends=[Matrix]; }; - Rtpca = derive2 { name="Rtpca"; version="1.4.0"; sha256="05i25sfgdqsnw9ky0p25aix8qrzkirmcl5vvpqrv8bwvs335glm4"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; }; - Rtreemix = derive2 { name="Rtreemix"; version="1.56.0"; sha256="15kr8y8w059bxhl9x7j7qg01b55jsxfmfzgdyxk6l40i3l4i0wh1"; depends=[Biobase graph Hmisc]; }; - S4Vectors = derive2 { name="S4Vectors"; version="0.32.4"; sha256="17dvypxcwp8c7ih23hi2366110by6zq1mjgxkmlbiklzachg9780"; depends=[BiocGenerics]; }; - SAIGEgds = derive2 { name="SAIGEgds"; version="1.8.1"; sha256="1fyhscqvhmpwd7zykj7mglk6liq6nccmic741mds5hqlx8zxhy7d"; depends=[gdsfmt Rcpp RcppArmadillo RcppParallel SeqArray SPAtest]; }; - SANTA = derive2 { name="SANTA"; version="2.30.0"; sha256="0w0rd0vmjvz98ijk53ikpin7x5acl0yfkb2v7y77ma6lizy70rgl"; depends=[igraph Matrix]; }; - SBGNview = derive2 { name="SBGNview"; version="1.8.0"; sha256="17jh1ad1a951r89xd9127c1wv5s4rzd03qq8rh5zjn2zxzpwswr4"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; - SBMLR = derive2 { name="SBMLR"; version="1.90.0"; sha256="08cvhlrh13v571jc0fgfiwzc041nq2ndxpy5nsxmgpbsw5ryfgff"; depends=[deSolve XML]; }; - SC3 = derive2 { name="SC3"; version="1.22.0"; sha256="1vbzinr4aiskv9hjbqqzzy3chj48lzk9vv1zk7vr9v8w6qwlg3fm"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; - SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.36.0"; sha256="16d161x1npa4lh6ckp0p9ykdrj3x36gsylmq1kjm2vw8g4zknszv"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; - SCANVIS = derive2 { name="SCANVIS"; version="1.8.0"; sha256="08cpq7cklv1z108cy0d6abv8xq8ins4ihdwzr04fr8bg2ikbi21z"; depends=[IRanges plotrix RCurl rtracklayer]; }; - SCATE = derive2 { name="SCATE"; version="1.4.0"; sha256="1b04bggi0rw9jmgak5j2ca6msqdrq1qdphg3g9w77a1rqyxza86s"; depends=[GenomicAlignments GenomicRanges mclust preprocessCore Rtsne SCATEData splines2 xgboost]; }; - SCArray = derive2 { name="SCArray"; version="1.2.1"; sha256="1p69m8jp3fz71a726h2r8zjgxj01bbsnnjz9714siz6awswm816l"; depends=[BiocGenerics DelayedArray DelayedMatrixStats gdsfmt IRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SCBN = derive2 { name="SCBN"; version="1.12.0"; sha256="19jpbr5nr59dc9khbbx60gzbsg8llfd1zqwb9v88nr43v059k13f"; depends=[]; }; - SCFA = derive2 { name="SCFA"; version="1.4.0"; sha256="1850c78niv5hp3c6axi5nmv4qawqca1ip3xppp2nar8f9xiqjd6l"; depends=[BiocParallel cluster clusterCrit glmnet igraph keras Matrix matrixStats psych RhpcBLASctl survival tensorflow]; }; - SCOPE = derive2 { name="SCOPE"; version="1.6.0"; sha256="01sj416q0qzpji7k34xz37l4955fa3l2imms96k8zz1gs2a1xm3j"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DescTools DNAcopy doParallel foreach GenomeInfoDb GenomicRanges gplots IRanges RColorBrewer Rsamtools S4Vectors]; }; - SCnorm = derive2 { name="SCnorm"; version="1.16.0"; sha256="12fi24vgrsk5l0sx8ylkzvqww157bycx8irx3j08198ds01kwbry"; depends=[BiocGenerics BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SDAMS = derive2 { name="SDAMS"; version="1.14.0"; sha256="1rppqribspgnh0b0cw1k35igybm9nc28yidv2l3rd8p3spv0w7hz"; depends=[qvalue SummarizedExperiment trust]; }; - SELEX = derive2 { name="SELEX"; version="1.26.0"; sha256="0wyv02xsby1ax02n2bdy1j5qi2ph4bibmy1kvrm4m9hgr3b2c8sn"; depends=[Biostrings rJava]; }; - SEPIRA = derive2 { name="SEPIRA"; version="1.14.0"; sha256="1bndk9affhbz9ppg3bqq6llf2w3m9m6bqabzjra6hqawgi0v4fb9"; depends=[corpcor limma]; }; - SEtools = derive2 { name="SEtools"; version="1.8.0"; sha256="0vi9vd3xrhhk2mh2npr34p2jqf3isqfbyj988314g754c2vdzryn"; depends=[BiocParallel circlize ComplexHeatmap data_table DESeq2 edgeR Matrix openxlsx randomcoloR S4Vectors seriation SummarizedExperiment sva]; }; - SGSeq = derive2 { name="SGSeq"; version="1.28.0"; sha256="15l0r6svs27k82dd472is26shwayz6rs5ylg5gpf3mldr7sa5kja"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; - SIAMCAT = derive2 { name="SIAMCAT"; version="1.14.0"; sha256="0ymy12qkxf2fl8ms4va1xp8gjpi1sdwlbm9j6qfdpm8sahlxhi4w"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo LiblineaR matrixStats mlr ParamHelpers phyloseq pROC progress PRROC RColorBrewer scales stringr]; }; - SICtools = derive2 { name="SICtools"; version="1.24.0"; sha256="0i2dccdkzfrx2qvhgvnbj9rv51qxqddpk4la7js2z664f1kxcjw0"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; - SIM = derive2 { name="SIM"; version="1.64.0"; sha256="15nyfzdq1a154rcn9y2z0j5qv4sgwifx3qqxpg1hcdmwkkihi9qy"; depends=[globaltest quantreg quantsmooth]; }; - SIMAT = derive2 { name="SIMAT"; version="1.26.0"; sha256="1cfsj9lfxl32jinimv139b6bdl0bh4fnwkvqziwlsrlck9k6qf2d"; depends=[ggplot2 mzR Rcpp reshape2]; }; - SIMD = derive2 { name="SIMD"; version="1.12.0"; sha256="0bsp7ma0c9j9k3agxchyp54kp126qjvgmaqgi2flgmgwnmkwwbii"; depends=[edgeR methylMnM statmod]; }; - SIMLR = derive2 { name="SIMLR"; version="1.20.0"; sha256="19vhv7j29hiimznazpz986api12ry6pd8cgpkwrnwybr4gdvkm7c"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; - SISPA = derive2 { name="SISPA"; version="1.24.0"; sha256="1gzcc2vq9wvsh92lp80y0dlsi67bws6ng76ab2a4ak1n2lqhm7ak"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; - SLGI = derive2 { name="SLGI"; version="1.54.0"; sha256="03jwdq4k44rys3f773c6l985a6v1bacbdghw97p0qpwspmzra8rs"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice]; }; - SLqPCR = derive2 { name="SLqPCR"; version="1.60.0"; sha256="1sy722nw7fax0m9nnv2d3gy9g5fc4x2xfar521x7x7psfydmy5b6"; depends=[]; }; - SMAD = derive2 { name="SMAD"; version="1.10.0"; sha256="1l0x22cg14aj40039jzw1yl3cncil91nv97y9sqs54ay8rvyr5aj"; depends=[dplyr magrittr Rcpp RcppAlgos tidyr]; }; - SMAP = derive2 { name="SMAP"; version="1.58.0"; sha256="03fdxaqsxjdq93xazw8rgv22smdwr0ji1rcf6rk20a0p0wvrdpxh"; depends=[]; }; - SMITE = derive2 { name="SMITE"; version="1.22.0"; sha256="0wbhw8mi346h496r31i8da6jf6n5immhqffirvf67fzv6dim3v42"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGGREST org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; - SNAGEE = derive2 { name="SNAGEE"; version="1.34.0"; sha256="1888qd2b1qmcvprp83qd02pp3bj0gipabbvr4xzn36crw4rwdksv"; depends=[SNAGEEdata]; }; - SNPRelate = derive2 { name="SNPRelate"; version="1.28.0"; sha256="011880cnpr6nnzf72n34b0bj5766iw5h4lm0zl0zdmpcgx95h24i"; depends=[gdsfmt]; }; - SNPediaR = derive2 { name="SNPediaR"; version="1.20.0"; sha256="1ljzj3fxqpfz75ax8smcfrghiw5hb7yv7hkn8i8ffwszni9ml63f"; depends=[jsonlite RCurl]; }; - SNPhood = derive2 { name="SNPhood"; version="1.24.0"; sha256="137lqpvjpr9zxxz26cigs55p2lkchs9jaljsw3bwsqrj9vki4rqr"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - SOMNiBUS = derive2 { name="SOMNiBUS"; version="1.2.0"; sha256="03px2q7rxcxppshlsy5vd50y1whzjs4cigjz78jnkhd3pi3sxq5s"; depends=[Matrix mgcv VGAM]; }; - SPEM = derive2 { name="SPEM"; version="1.34.0"; sha256="187zvdd5j4f971zx6ppgws0jwalr4wqwmwj72ngcrn0fk3lzwv38"; depends=[Biobase Rsolnp]; }; - SPIA = derive2 { name="SPIA"; version="2.46.0"; sha256="0q8f32z8dm8jl295y88p5cj1rydkkxf9i1pvgnflwjqybn02kz0g"; depends=[KEGGgraph]; }; - SPLINTER = derive2 { name="SPLINTER"; version="1.20.0"; sha256="0qf35kxq6gyf401x59v1y92hf8fnd2vkjd4zsjrhf8bck80a6hy9"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; }; - SPONGE = derive2 { name="SPONGE"; version="1.16.0"; sha256="18fkw98b9m197n214fm646nr0grjsfhkqs2m2cx6v4aia5kn2rk3"; depends=[Biobase data_table doRNG expm foreach glmnet gRbase igraph iterators logging MASS ppcor]; }; - SPsimSeq = derive2 { name="SPsimSeq"; version="1.4.0"; sha256="1s9vcb58sbr7p806palz7ak5dpqimj9ic4ycv34ymzmdsnyryiwb"; depends=[edgeR fitdistrplus Hmisc limma mvtnorm phyloseq SingleCellExperiment WGCNA]; }; - SQLDataFrame = derive2 { name="SQLDataFrame"; version="1.8.0"; sha256="1i5jjc65akd32klgsrfr4p9mvn6mzzjh6lmnh0zznxkfwsb37l8g"; depends=[BiocGenerics DBI dbplyr dplyr lazyeval RSQLite S4Vectors tibble]; }; - SQUADD = derive2 { name="SQUADD"; version="1.44.0"; sha256="02lby5pyvmkr4im96s6av4iz12l4w3j2pil0mbnxmnzlxn58bxgw"; depends=[RColorBrewer]; }; - SRAdb = derive2 { name="SRAdb"; version="1.56.0"; sha256="18z62c2w6spsmnyqcmc57w41vli5vrcrl3hpy1al1n1yy9fgil0y"; depends=[GEOquery graph RCurl RSQLite]; }; - STAN = derive2 { name="STAN"; version="2.22.0"; sha256="1inqjw11a791c6svw0y4p3m8rd09fjcna3j4p5950f975aph1q4g"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; - STATegRa = derive2 { name="STATegRa"; version="1.30.0"; sha256="10a230bvfjvjwsjkh0v3fjbrjkwcvsdch8bfv1s6h4yav1m4wca7"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; - STRINGdb = derive2 { name="STRINGdb"; version="2.6.5"; sha256="0n2r2zc2sx1a2a8wqqxz6z7i4ynaj18iwbwgif7469n13agji5mv"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; - STROMA4 = derive2 { name="STROMA4"; version="1.18.0"; sha256="10v8kgmx79zd2vgzwij3il80l724sdl0k4a3rm73kd4jw2wvhkrh"; depends=[Biobase BiocParallel cluster matrixStats]; }; - SWATH2stats = derive2 { name="SWATH2stats"; version="1.24.0"; sha256="0ifl1y3rs0r2zqkpcpiibyv12mjqz6wxs296f691k1qfz9qvx8kg"; depends=[biomaRt data_table ggplot2 reshape2]; }; - SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.48.0"; sha256="1xxz5ggxj10psrz5rm0xjr8mxwc3cfyl9chsa9w2wxrrixypdnah"; depends=[]; }; - Scale4C = derive2 { name="Scale4C"; version="1.16.0"; sha256="0gw89mnnpspi5y03ck8gqinnwbkykmf2k65gxm8m9j4l63gg33m8"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; - ScaledMatrix = derive2 { name="ScaledMatrix"; version="1.2.0"; sha256="0vz8441gl5gycy1ypybwhq97bnyvhhlg6gxpi1dsdy2c9b6d81kc"; depends=[DelayedArray Matrix S4Vectors]; }; - Sconify = derive2 { name="Sconify"; version="1.14.0"; sha256="0dan0nbar8f5x6l7cwlx4f4yycpxj3j3f0xx3nfm8n07g1gbcf04"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; - SemDist = derive2 { name="SemDist"; version="1.28.0"; sha256="0291sqa4lhrfr2j6fdag814xzawvnqsdw8xbmh0kgv6jd2pqk2am"; depends=[annotate AnnotationDbi GO_db]; }; - SeqArray = derive2 { name="SeqArray"; version="1.34.0"; sha256="13fl5ls2xqka1dixxf428gqy18vg9q1xnmp4l9whxg97nppbjs81"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - SeqGSEA = derive2 { name="SeqGSEA"; version="1.34.0"; sha256="0829rasz7lrhsm7w248dy9s4fzx2qmdkxvkgzakf2vn1j4h2x63v"; depends=[Biobase biomaRt DESeq2 doParallel]; }; - SeqGate = derive2 { name="SeqGate"; version="1.4.0"; sha256="155jii2mjpvcpif0yrjamb5220qiw00sk0yag14n47vv8gdyxncw"; depends=[BiocManager GenomicRanges S4Vectors SummarizedExperiment]; }; - SeqSQC = derive2 { name="SeqSQC"; version="1.16.0"; sha256="0bqfqg4gr3f5j9m5wnj7rpkia1dgmkwj5kr7fn82cq19qrz2hi7k"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; - SeqVarTools = derive2 { name="SeqVarTools"; version="1.32.0"; sha256="0axiq33djppcvapz6ykpr6drd8b1lwd5xa458spqyaxj3f061l66"; depends=[Biobase BiocGenerics data_table gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray]; }; - SharedObject = derive2 { name="SharedObject"; version="1.8.0"; sha256="1v6r94dp1lfx7kvbvw56pzshyrpsvpq3i92gld6b4gs51jc5si29"; depends=[BH BiocGenerics Rcpp]; }; - ShortRead = derive2 { name="ShortRead"; version="1.52.0"; sha256="1p17v15wd3v6w9ligpjjk28vy8k2ql57y2hhm8y6vnv9y3nagjsx"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rhtslib Rsamtools S4Vectors XVector zlibbioc]; }; - SigCheck = derive2 { name="SigCheck"; version="2.26.0"; sha256="1wl06yipz59gqw9swj9sspzgbpn9g8r5vs9wgbr9kbya0yv225k6"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; - SigFuge = derive2 { name="SigFuge"; version="1.32.0"; sha256="0kayrdjakcg6wbiwncx3jmg7abnym18jj2wr2yfd980g0c387zbg"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; - SigsPack = derive2 { name="SigsPack"; version="1.8.0"; sha256="07fz6k2bcvbwdnqabvd9r4q4fnkmxsrn6jldgwyqg0gh4jjmnqfw"; depends=[Biobase Biostrings BSgenome GenomeInfoDb GenomicRanges quadprog rtracklayer SummarizedExperiment VariantAnnotation]; }; - SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.32.0"; sha256="08lsr5b57lrkqryc51s25hmfhcfd45lvwdzn8a4f12961vzzdrj6"; depends=[Biobase limma mclust Ringo]; }; - SimFFPE = derive2 { name="SimFFPE"; version="1.6.0"; sha256="00f1f1frkslls6ra0bi98g26nn7l8vpplcc0vz7b9jhjic5bys8p"; depends=[Biostrings doParallel dplyr foreach GenomicRanges IRanges Rsamtools truncnorm]; }; - SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.16.0"; sha256="01075vbs8hy399pxalav9rbkz4djvl84ip559jkz51fypd0m4i39"; depends=[BiocGenerics DelayedArray GenomicRanges S4Vectors SummarizedExperiment]; }; - SingleCellSignalR = derive2 { name="SingleCellSignalR"; version="1.6.0"; sha256="1iw9yis5d6m2bzqkyncz5cy49rncnjrbzwah4c3il8aq5a21hrfh"; depends=[BiocManager circlize data_table edgeR foreach gplots igraph limma multtest pheatmap Rtsne scran SIMLR stringr]; }; - SingleMoleculeFootprinting = derive2 { name="SingleMoleculeFootprinting"; version="1.2.0"; sha256="0abaxk5ck81libsfhy1w9jx1jjf7cix7znl2gydh2fd5qaafzfd3"; depends=[BiocGenerics Biostrings BSgenome data_table GenomeInfoDb GenomicRanges IRanges plyr QuasR RColorBrewer]; }; - SingleR = derive2 { name="SingleR"; version="1.8.1"; sha256="0j0h6ipm65wv38qx40z16h01mfirpshfn4lhlwlg2nri4vmihlpi"; depends=[beachmat BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats Matrix Rcpp S4Vectors SummarizedExperiment]; }; - SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.30.0"; sha256="1dxzfkvljnydv7kfybfa52dwcbkkci2r8gjspjf90k2bxf10phql"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; - SpacePAC = derive2 { name="SpacePAC"; version="1.32.0"; sha256="1pgpfxyw621f7ljwy4y6q9fdlk263b4rwz9vg1f2h61nz097nk2l"; depends=[iPAC]; }; - Spaniel = derive2 { name="Spaniel"; version="1.8.0"; sha256="0js302hgxn0q9xy7s6pdxidvhfcvm711bci6cw3a3bwhq2kacvnc"; depends=[dplyr DropletUtils ggplot2 igraph jpeg jsonlite magrittr png S4Vectors scater scran Seurat shiny SingleCellExperiment SummarizedExperiment]; }; - SparseSignatures = derive2 { name="SparseSignatures"; version="2.4.0"; sha256="0hz48bvw20qdvfb5ci4d9zq3znpzklv0mhhxrpd8n23xv8amby0l"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls reshape2]; }; - SpatialCPie = derive2 { name="SpatialCPie"; version="1.10.0"; sha256="0ml8fbjhnb2azvfcplpaw2zfvngkxn7z81d1s5f2shiww6x3qb8f"; depends=[colorspace data_table digest dplyr ggforce ggiraph ggplot2 ggrepel igraph lpSolve purrr readr rlang shiny shinycssloaders shinyjs shinyWidgets SummarizedExperiment tibble tidyr tidyselect zeallot]; }; - SpatialDecon = derive2 { name="SpatialDecon"; version="1.4.3"; sha256="11hb28m7h78cvzz9s545jzssnbxjbhfmdb03rxbvxq1rdh0whljr"; depends=[Biobase GeomxTools Matrix repmis SeuratObject]; }; - SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.4.0"; sha256="1jn2xr51hv1pm53pgsilhbwal0bnz7mc17z5plpjxgh7jn9bx4x2"; depends=[BiocFileCache BiocGenerics DropletUtils magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; }; - SpeCond = derive2 { name="SpeCond"; version="1.48.0"; sha256="1mpzf9l7yim59wfg244rzqxm9vb10lp88688p5v2whcv5xx0a34a"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; - Spectra = derive2 { name="Spectra"; version="1.4.3"; sha256="0dyjczbvyxx86rqw8h2svgx5ridil7nwb7lj675j8vgj5dcn0rza"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; }; - SpectralTAD = derive2 { name="SpectralTAD"; version="1.10.0"; sha256="00yx87zkyyzpzkm9slmhs78pqivcfladsrnvh3wwlkgi2rky7qps"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; }; - SpidermiR = derive2 { name="SpidermiR"; version="1.24.0"; sha256="1mwqfg5vgc262bhjnbhn8yvjgmqyafc9kzln1a5pidpj5gyr757q"; depends=[AnnotationDbi gdata ggplot2 gplots gridExtra httr igraph lattice latticeExtra MAGeCKFlute miRNAtap miRNAtap_db org_Hs_eg_db TCGAbiolinks]; }; - SplicingFactory = derive2 { name="SplicingFactory"; version="1.2.0"; sha256="0gdk14591slhwnb6rpnksdirzgd7ga03sqkr3k7wndgk5h6dp2jb"; depends=[SummarizedExperiment]; }; - SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.34.0"; sha256="0yks0iwh57795a3r9wmbc88afixw2p21dqmp9mh7a74zxyms51xl"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; - StarBioTrek = derive2 { name="StarBioTrek"; version="1.20.0"; sha256="1bxbqgjg8a5px6429raf1rlwjaj1z95w952icjpjx7602q890mrh"; depends=[AnnotationDbi e1071 ggplot2 graphite igraph MLmetrics reshape2 ROCR SpidermiR]; }; - Streamer = derive2 { name="Streamer"; version="1.40.0"; sha256="1hcjazhyg7g7yh1nnz39yjkh77291wpzm03bd1jspgvrjz28cv5w"; depends=[BiocGenerics graph RBGL]; }; - Structstrings = derive2 { name="Structstrings"; version="1.10.0"; sha256="0dkzrb5dx0spgkzzwwcs04dwjxacm9sl6jch120amh22v5y7wyzm"; depends=[BiocGenerics Biostrings crayon IRanges S4Vectors stringi stringr XVector]; }; - StructuralVariantAnnotation = derive2 { name="StructuralVariantAnnotation"; version="1.10.1"; sha256="009l27kb9gvwwf57dwxfribhfhvn4z5pw8yc847l6pkbzqggx678"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang rtracklayer S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; - SubCellBarCode = derive2 { name="SubCellBarCode"; version="1.10.0"; sha256="039fz7byy5whzm59gqar0784rv0axh6zw49jvh9p49wj2zx8pxzc"; depends=[AnnotationDbi caret e1071 ggplot2 ggrepel gridExtra networkD3 org_Hs_eg_db Rtsne scatterplot3d]; }; - SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.12.0"; sha256="1vld4hzv3zbv7l0i4i8wkjn0rgn8f9lvxb6x2vw6qw47fn11skxw"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; - SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.24.0"; sha256="0qpnx2aii9vs7fcp0ax5j77ysbhi4qhjhm35vnygs3isbrjn925a"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors]; }; - Summix = derive2 { name="Summix"; version="2.0.0"; sha256="1bn5zsd3fnga8lski6ahh7fbm310n6awz27nafwzm6m9pzybwv49"; depends=[nloptr]; }; - Sushi = derive2 { name="Sushi"; version="1.32.0"; sha256="073mh1d063ph5zk1d8kipgblr4l1ixqbxflhq4669761fi2frlw4"; depends=[biomaRt zoo]; }; - SwathXtend = derive2 { name="SwathXtend"; version="2.16.0"; sha256="01hjjx50fwwicvwci4x191cq8rvlh2v6gnpi5wb1mjqnyngrfzgb"; depends=[e1071 lattice openxlsx VennDiagram]; }; - SynExtend = derive2 { name="SynExtend"; version="1.6.0"; sha256="1r0f1yv6dxxc2k1q7vbcw6bjsk0j7ryvlp8hzmjfwi37cikril72"; depends=[Biostrings DECIPHER IRanges S4Vectors]; }; - SynMut = derive2 { name="SynMut"; version="1.10.0"; sha256="069pahvhsvnsbz8mvw4mgdqdh5bd26jv5gf8m4h5ys7c7sgn7a7f"; depends=[BiocGenerics Biostrings seqinr stringr]; }; - TADCompare = derive2 { name="TADCompare"; version="1.4.0"; sha256="1qywd8zm21578yfswgwwgwlhphms8m4acqr47zn8dj1qk8578q5k"; depends=[cluster cowplot dplyr ggplot2 ggpubr HiCcompare magrittr Matrix PRIMME RColorBrewer reshape2 tidyr]; }; - TAPseq = derive2 { name="TAPseq"; version="1.6.0"; sha256="0y40z1xpqif09yins9jf4k0h7wljdf3qwgzykxcq5lfgns66cx91"; depends=[BiocGenerics BiocParallel Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges S4Vectors tidyr]; }; - TBSignatureProfiler = derive2 { name="TBSignatureProfiler"; version="1.6.0"; sha256="0sdgbkg0mv742y9b7frp4i2zrknfw87ghz6wvw4w0y0gjrbasj9r"; depends=[ASSIGN BiocGenerics BiocParallel ComplexHeatmap DESeq2 DT edgeR gdata ggplot2 GSVA magrittr RColorBrewer reshape2 rlang ROCit S4Vectors singscore SummarizedExperiment]; }; - TCC = derive2 { name="TCC"; version="1.34.0"; sha256="0298zfvrs7x6050s3222fg5yp60siz85pfh6541wmah7j0wzpgsd"; depends=[baySeq DESeq2 edgeR ROC]; }; - TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.22.4"; sha256="071wz6dm6dypbfzvxd6j67l1iawlb6d5sfzq871zh06fzaxjm332"; depends=[biomaRt data_table downloader dplyr GenomicRanges ggplot2 httr IRanges jsonlite knitr plyr purrr R_utils readr rvest S4Vectors stringr SummarizedExperiment TCGAbiolinksGUI_data tibble tidyr XML xml2]; }; - TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.20.0"; sha256="0941xcd42kz72vlhlm93681dwgi4afli5j8cfs331fpddpv7l4af"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel maftools pathview plotly readr sesame shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; }; - TCGAutils = derive2 { name="TCGAutils"; version="1.14.1"; sha256="1i8cl01l9qnpvbirxka5raaa8xp88wwn6914cqsq3qz44ji4gi79"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; - TCseq = derive2 { name="TCseq"; version="1.18.0"; sha256="1kzz3fl19d1ivb6l55xadwg202vq4wza3r7wgf6fx196s20vnvng"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; - TDARACNE = derive2 { name="TDARACNE"; version="1.44.0"; sha256="0rjlwj05fw0y4q02lhvdg0blpqrgxjq5kdq0hff94qjwp7fgn5gn"; depends=[Biobase GenKern Rgraphviz]; }; - TEQC = derive2 { name="TEQC"; version="4.16.0"; sha256="08jllnzsfz0zkn2m8n5c6cppjbh5cm8kpgwq652bgw5jmkkpg3f2"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; - TFARM = derive2 { name="TFARM"; version="1.16.0"; sha256="0dr3ifa3m115vgyk7501jp6h4wci04y9bqf41ixd40dwspd0dzjw"; depends=[arules fields GenomicRanges gplots stringr]; }; - TFBSTools = derive2 { name="TFBSTools"; version="1.32.0"; sha256="0j5gv145fczzdspwhbywlg47y05pgnkra9jg7bn4wa1k0cf5pr9g"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; - TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.14.0"; sha256="0wdl9lmyfyfdh8b3r1nxzjdwasly3i3vzhbqqpf18p1xbh8zkapm"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils]; }; - TFHAZ = derive2 { name="TFHAZ"; version="1.16.0"; sha256="05lnidls85b4r9xnyi0a3b26jv7nmjd7fwhgzrkrz3938nwh5xl2"; depends=[GenomicRanges IRanges S4Vectors]; }; - TFutils = derive2 { name="TFutils"; version="1.14.0"; sha256="00j83p8npzlphfcf1vmws65fy8cx109ksi2cmgnnizz5xj4xflaz"; depends=[AnnotationDbi BiocFileCache dplyr DT GSEABase httr magrittr miniUI org_Hs_eg_db readxl rjson Rsamtools shiny]; }; - TIN = derive2 { name="TIN"; version="1.26.0"; sha256="07m8q3lgcflmrchpw88y4w62iwq5cxd0sw1lbassvgych7dnq3ks"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; - TMixClust = derive2 { name="TMixClust"; version="1.16.0"; sha256="1i69q92ss9q2vv6hyxvq8wv55w1937rmda43a8qfblzy0jr5avww"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; - TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.10.0"; sha256="1iz2jb895hsliavk9g93mvvccla461cmifmsam3qdscj09gfl17x"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; }; - TOAST = derive2 { name="TOAST"; version="1.8.3"; sha256="13vdkygyz0qiwyniz4ahydpfkj6k1ap91hsnkzr6ym765cpdan01"; depends=[corpcor doParallel EpiDISH GGally ggplot2 limma nnls quadprog SummarizedExperiment tidyr]; }; - TPP = derive2 { name="TPP"; version="3.22.1"; sha256="0vr8sv22rhhrv63arz33vbkp5i3cwd03bz54qwx3zbdcf5l3snhy"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; - TPP2D = derive2 { name="TPP2D"; version="1.10.0"; sha256="183gf3v1nj0nqll817whxdif0kiwscil88ig0vjj1hn3936q59v6"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; }; - TRESS = derive2 { name="TRESS"; version="1.0.0"; sha256="0zmzbpzhcsykbpifs5m8md2lhami0ya7y9sf2rdmadgbx17gvzj7"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges Matrix matrixStats Rsamtools rtracklayer S4Vectors]; }; - TRONCO = derive2 { name="TRONCO"; version="2.26.0"; sha256="0xjjv67mcgb90f6r3i6qy9d8k6sif4asq7qiiq1bhs90806jrrsb"; depends=[bnlearn cgdsr circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; - TSCAN = derive2 { name="TSCAN"; version="1.32.0"; sha256="1vkkwwdhh80j67clkyn7x9ld86dhisgxp8kgv86va501fgpm11qk"; depends=[combinat DelayedArray fastICA ggplot2 gplots igraph Matrix mclust mgcv plyr S4Vectors shiny SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; - TSRchitect = derive2 { name="TSRchitect"; version="1.20.0"; sha256="1v9zz8ny9rwkyz98cv49l9ilh68h8mvm2x44n8i8rvjayc50zi9i"; depends=[AnnotationHub BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges readxl Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - TTMap = derive2 { name="TTMap"; version="1.16.0"; sha256="1zbngv7zgnsjp601q0958547d9fxg7dlj36sywg0qa322mbj3skb"; depends=[Biobase colorRamps rgl SummarizedExperiment]; }; - TVTB = derive2 { name="TVTB"; version="1.20.0"; sha256="0vpx7sryvwzrxlj2mav3mr27k3lbi1mn32ajlzypvsz1aw1pzqm5"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; - TarSeqQC = derive2 { name="TarSeqQC"; version="1.24.0"; sha256="0303kqwgs442vf0j0rpw15qjk6snvayd9rrjbll8gjnv34xzmw7d"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; - TargetDecoy = derive2 { name="TargetDecoy"; version="1.0.0"; sha256="0bvby24gqwkxmcq0d9c5ix5kx1svc59vcil5xv0fmsdzp9bgv4c4"; depends=[ggplot2 ggpubr mzID mzR]; }; - TargetScore = derive2 { name="TargetScore"; version="1.32.0"; sha256="15yh0ms1i38541kf7lxjk3xs9gpm4ixaykq6mhn572slkxdx737y"; depends=[Matrix pracma]; }; - TargetSearch = derive2 { name="TargetSearch"; version="1.50.1"; sha256="1l84lajyrx9x6b3spbjc3zf83bmy4s5qv1a3hz8i56pc9wmqpfyz"; depends=[assertthat ncdf4]; }; - TileDBArray = derive2 { name="TileDBArray"; version="1.4.0"; sha256="007qdq6w0i9b2mbcdbdjm62nzwy15scsxml6fqr0fwgzjfzvzb0z"; depends=[DelayedArray Rcpp S4Vectors tiledb]; }; - TimeSeriesExperiment = derive2 { name="TimeSeriesExperiment"; version="1.12.0"; sha256="0fphnkkd3i7zf33a9lhw95n80vzv1z7fmn7mhrfb949yz4jdvk7d"; depends=[DESeq2 dplyr dynamicTreeCut edgeR ggplot2 Hmisc limma magrittr proxy S4Vectors SummarizedExperiment tibble tidyr vegan viridis]; }; - TimiRGeN = derive2 { name="TimiRGeN"; version="1.4.0"; sha256="1lpvw24gnm1rdl4p2vxh07z82x7wcwcpmak7rjh3yq409lwi72i0"; depends=[biomaRt clusterProfiler dplyr FreqProf ggdendro gghighlight ggplot2 gplots gtools igraph Mfuzz MultiAssayExperiment RCy3 readxl reshape2 rWikiPathways scales stringr tidyr]; }; - TissueEnrich = derive2 { name="TissueEnrich"; version="1.14.0"; sha256="0gbk3773b1xm801jh4nmys06917xy31j64mfc3pjap4rsssqbg2r"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; - TitanCNA = derive2 { name="TitanCNA"; version="1.32.0"; sha256="1syfhh66qgayxq6apyzgj9vxj4k52w09ryfip7briii7xip9b414"; depends=[BiocGenerics data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges VariantAnnotation]; }; - TnT = derive2 { name="TnT"; version="1.16.0"; sha256="1l1fkxkl2q0h5abjbmzz2chm4xavd6ysigsqqa7d2afgvgn92p2l"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; }; - ToxicoGx = derive2 { name="ToxicoGx"; version="1.4.0"; sha256="0l4a3263h6vjxrh6xawjz1hn4ksh7r0a7fch1k2sm3jb0rwhhgdp"; depends=[assertthat Biobase BiocParallel caTools CoreGx data_table downloader dplyr ggplot2 jsonlite limma magrittr reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; }; - TraRe = derive2 { name="TraRe"; version="1.2.0"; sha256="1sz7cb3fcpzi3hg5w27cx19366p0767hz8v945s35z9iax2a7bdp"; depends=[BiocParallel dqrng ggplot2 glmnet gplots gtools hash igraph matrixStats pvclust R_utils SummarizedExperiment vbsr]; }; - TrajectoryGeometry = derive2 { name="TrajectoryGeometry"; version="1.2.0"; sha256="1agvbkdkzfg72m8iy9wawgrsgps12d6ml5zprab8q9qx5ajsp7y4"; depends=[ggplot2 pracma rgl]; }; - TrajectoryUtils = derive2 { name="TrajectoryUtils"; version="1.2.0"; sha256="0pzm1h69bg04a2v09r8c6pb3pix6f3n5dylvbv7wsp574qfaqyd1"; depends=[igraph Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; - TransView = derive2 { name="TransView"; version="1.38.0"; sha256="1idhac2vrjyhx1750xx3d9pbnpi5404wn9ppqsdgcscyb124p1ph"; depends=[BiocGenerics GenomicRanges gplots IRanges Rhtslib S4Vectors zlibbioc]; }; - Travel = derive2 { name="Travel"; version="1.2.0"; sha256="0knj8ih6sfa9iqm0b327bmn2cr15g01yyfm0nlv68xvvb7d85ij7"; depends=[Rcpp]; }; - TreeAndLeaf = derive2 { name="TreeAndLeaf"; version="1.6.1"; sha256="155nnq466v5li63idj5iylydl60pfnqrhqb300qjcsw2yi3fvdv4"; depends=[ape igraph RedeR]; }; - TreeSummarizedExperiment = derive2 { name="TreeSummarizedExperiment"; version="2.2.0"; sha256="168n1y6qzlssf6r3di49gmd2vlkspgf82f70q0rwkp8my46wiiz1"; depends=[ape BiocGenerics BiocParallel Biostrings dplyr IRanges rlang S4Vectors SingleCellExperiment SummarizedExperiment treeio]; }; - Trendy = derive2 { name="Trendy"; version="1.16.0"; sha256="0apmyzkzm599f3a8p2qgc8frkpy22kv3295q4wrrwl028ky8ksjx"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; - TurboNorm = derive2 { name="TurboNorm"; version="1.42.0"; sha256="0zzkjyqpbnm6974xcik8jjkapplzlbqcq7y1ml1xwg79hkfvvhfr"; depends=[affy convert lattice limma marray]; }; - TypeInfo = derive2 { name="TypeInfo"; version="1.60.0"; sha256="0b1wp6cdcdd0r92rvkb3n0zgp6zy2421akqmip9i8bbfwxvf1m2w"; depends=[]; }; - UMI4Cats = derive2 { name="UMI4Cats"; version="1.4.0"; sha256="004gakcsg9wnns17irps57wn70m4ws8xh2yhb34g1a7jvzwfyss6"; depends=[annotate BiocFileCache BiocGenerics Biostrings BSgenome cowplot DESeq2 dplyr fda GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magick magrittr org_Hs_eg_db R_utils rappdirs Rbowtie2 RColorBrewer regioneR reshape2 rlang Rsamtools S4Vectors scales ShortRead stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene zoo]; }; - UNDO = derive2 { name="UNDO"; version="1.36.0"; sha256="0vymwbngyhz1b2ndbm3d3szfb8206ci9v6vi6jmzqq3y1my316r9"; depends=[Biobase BiocGenerics boot MASS nnls]; }; - Ularcirc = derive2 { name="Ularcirc"; version="1.12.0"; sha256="02cc5hw25m8dkm0g2riffalmfkr1wfxvy84s7lw29npiyx0s9hjk"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel gsubfn mirbase_db moments Organism_dplyr S4Vectors shiny shinydashboard shinyFiles shinyjs Sushi yaml]; }; - UniProt_ws = derive2 { name="UniProt.ws"; version="2.34.0"; sha256="0ldds8x2m6na24lsdfy6xgnkmxv61ji1vv5nnflw9xcn3cp0nqfw"; depends=[AnnotationDbi BiocFileCache BiocGenerics rappdirs RCurl RSQLite]; }; - Uniquorn = derive2 { name="Uniquorn"; version="2.14.0"; sha256="188clr002mmp0g0kc04mwhgq6cqfygkmhhc18wjjwpy9cczr1gg8"; depends=[doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; - VAExprs = derive2 { name="VAExprs"; version="1.0.1"; sha256="0r9fqn8np3azw55drzvll1m0si4smgrbm5941al3v6b86hz1z8yg"; depends=[CatEncoders DeepPINCS DiagrammeR gradDescent keras mclust purrr scater SingleCellExperiment SummarizedExperiment tensorflow]; }; - VCFArray = derive2 { name="VCFArray"; version="1.10.0"; sha256="0kqqw00nwcigqjlk5h61b4y0q0ss3h8n8cjx5jblf74bzf69ppxm"; depends=[BiocGenerics DelayedArray GenomicFiles GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; - VERSO = derive2 { name="VERSO"; version="1.4.0"; sha256="1sbnl3lz9f3bvxzlcdcp1bz2jwyyv3acsahzhwgxhd25b9s4kla0"; depends=[ape Rfast]; }; - VaSP = derive2 { name="VaSP"; version="1.6.0"; sha256="1z98284yysnpkg01rr61a4q194xllq1zlp9drqfxfldnyyipby9y"; depends=[ballgown cluster GenomeInfoDb GenomicAlignments GenomicRanges IRanges matrixStats Rsamtools S4Vectors Sushi]; }; - VanillaICE = derive2 { name="VanillaICE"; version="1.56.3"; sha256="0c9ly16pwx1sxbh1gap02656yh75lrd05w52ki8xk58z3ywfhvk1"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; - VarCon = derive2 { name="VarCon"; version="1.2.0"; sha256="1iay3m5mf9ck46zpkqw3hf7cv00jgvg05k8705wkgaj6gjajs7ga"; depends=[Biostrings BSgenome GenomicRanges ggplot2 IRanges shiny shinycssloaders shinyFiles]; }; - VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.40.0"; sha256="1r9kayp0hxcwls08lv2fh0cmf9ks0lqx3k31c1zn4asw4dyqpgva"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges MatrixGenerics Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; - VariantExperiment = derive2 { name="VariantExperiment"; version="1.8.0"; sha256="0f9zm5jcdw4ziqaynm6kn73n2pislrgwa7lwqmwmkprzirckpkk5"; depends=[Biostrings DelayedArray DelayedDataFrame GDSArray gdsfmt GenomicRanges IRanges S4Vectors SeqArray SeqVarTools SNPRelate SummarizedExperiment]; }; - VariantFiltering = derive2 { name="VariantFiltering"; version="1.30.0"; sha256="15js8xzi9rsgkjkqcshzk3r3g85kdnxn5v2hi6l5s4yxj9lnq12p"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; - VariantTools = derive2 { name="VariantTools"; version="1.36.0"; sha256="0079dsgav4q03c4i0dhggc88iifd828n73kjv3sahim9akafdshl"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - VegaMC = derive2 { name="VegaMC"; version="3.32.0"; sha256="19vjzy0a9jcndgyh9vfihlk6pbld28pf1px84km03xr3hrlsp1fm"; depends=[Biobase biomaRt]; }; - VennDetail = derive2 { name="VennDetail"; version="1.10.0"; sha256="16vhjfi8hyjs8x2s278j4dfjyhsc2jnh1s8h10ddkbrkynckdf20"; depends=[dplyr futile_logger ggplot2 magrittr purrr tibble UpSetR VennDiagram]; }; - ViSEAGO = derive2 { name="ViSEAGO"; version="1.8.0"; sha256="0chb10y97j7kv00i4wbnkxyd7iwf28ybdnkd4ijsamf7ddl814hq"; depends=[AnnotationDbi AnnotationForge biomaRt data_table dendextend DiagrammeR DT dynamicTreeCut fgsea ggplot2 GO_db GOSemSim heatmaply htmlwidgets igraph plotly processx R_utils RColorBrewer scales topGO UpSetR]; }; - VplotR = derive2 { name="VplotR"; version="1.4.0"; sha256="0ahf7nqxymx46w3rs8qq6jpvw41avzmssw7apnax13x9gn29kbg6"; depends=[cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr RColorBrewer reshape2 Rsamtools S4Vectors zoo]; }; - Wrench = derive2 { name="Wrench"; version="1.12.0"; sha256="1vzv7sswijgb8nq58yrc19wlw2nnpjvans86fqqzs4p8wvq8j06n"; depends=[limma locfit matrixStats]; }; - XDE = derive2 { name="XDE"; version="2.40.0"; sha256="0f7liqy2gf6ka7wjj591yi8805m3nn21c440vz9iqsanszxnsi6q"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools mvtnorm RColorBrewer siggenes]; }; - XINA = derive2 { name="XINA"; version="1.12.0"; sha256="14j1rn3p7i0rlqkbbg0a6pyhb97ifzvsbw6vfxw9pna7zv7rbhsp"; depends=[alluvial ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; - XNAString = derive2 { name="XNAString"; version="1.2.2"; sha256="0rc02n3dijcmfj9dr02zlvqr38vmjy3w2drj2fg8i7yrhqp51a9l"; depends=[Biostrings BSgenome data_table formattable future_apply GenomicRanges IRanges Rcpp S4Vectors stringi stringr]; }; - XVector = derive2 { name="XVector"; version="0.34.0"; sha256="07r4qgmnifw9jk2srjg0cvl310j0f9y35jrg0zqhlvhmyhg6n2c0"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; - Xeva = derive2 { name="Xeva"; version="1.10.0"; sha256="0c4ak66kl13gp18h1xahhfy9hhx0cpspncigdznjqpxwgrbs1qpf"; depends=[BBmisc Biobase ComplexHeatmap doParallel downloader ggplot2 nlme PharmacoGx Rmisc scales]; }; - YAPSA = derive2 { name="YAPSA"; version="1.20.1"; sha256="08r05fzpraggbxv15lx0b68kjlkysp0rcdlm6n9avzmlsdqplb2h"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap corrplot dendextend doParallel dplyr GenomeInfoDb GenomicRanges GetoptLong ggbeeswarm ggplot2 gridExtra gtrellis KEGGREST limSolve magrittr PMCMRplus pracma reshape2 SomaticSignatures VariantAnnotation]; }; - a4 = derive2 { name="a4"; version="1.42.0"; sha256="0mkgim93441zxhn4wmbin9ydl94srsawis0xwx479l0byj88n07m"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; - a4Base = derive2 { name="a4Base"; version="1.42.0"; sha256="0rddxnflvbc6z4sj2h8js8yfh0zhrrwj8fk00wicaqp4rkr5yaxy"; depends=[a4Core a4Preproc annaffy Biobase genefilter glmnet gplots limma mpm multtest]; }; - a4Classif = derive2 { name="a4Classif"; version="1.42.0"; sha256="0q50d41n7drj5c9x6njyvzr6bj7glmkp1vpyz6cpj97j2v9nikwb"; depends=[a4Core a4Preproc Biobase glmnet pamr ROCR varSelRF]; }; - a4Core = derive2 { name="a4Core"; version="1.42.0"; sha256="074aa52y6c70417lxwrclk613gbs7zv3326g9ndbbzzs5pmnh1y0"; depends=[Biobase glmnet]; }; - a4Preproc = derive2 { name="a4Preproc"; version="1.42.0"; sha256="1qzr54w1qys1ppd71i5b57503dijfnnbn516a2mfk5l9l7wr728d"; depends=[Biobase BiocGenerics]; }; - a4Reporting = derive2 { name="a4Reporting"; version="1.42.0"; sha256="1vyah71gm4ngsgy0y10cdxa9b1g810gqa5pbvb3krh5i6h35smwr"; depends=[xtable]; }; - aCGH = derive2 { name="aCGH"; version="1.72.0"; sha256="1r1q6iq3g7svfn5m4jxlxp413djb40mvf6lh595y86sgwav5k6l4"; depends=[Biobase cluster multtest survival]; }; - abseqR = derive2 { name="abseqR"; version="1.12.0"; sha256="1v9g71x689ly107c0qmc5iv8qk63nn6lp7yd03jf7hlcafmvqsvz"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; }; - acde = derive2 { name="acde"; version="1.24.0"; sha256="13ks87am73m3bjn9ljapxml2a9cxdpgv9flwvly8aqmi3ndxyqi6"; depends=[boot]; }; - adSplit = derive2 { name="adSplit"; version="1.64.0"; sha256="1b4ck371h3a76m5h0brvlzsyg1g6q5fjrhra5hqv9pwxr330h9r2"; depends=[AnnotationDbi Biobase cluster GO_db KEGGREST multtest]; }; - adductomicsR = derive2 { name="adductomicsR"; version="1.10.0"; sha256="0cnvxrk0h3r6jpa4g4qismg6zk5c7rf8lqixg89c24i98gffkbcl"; depends=[adductData ade4 AnnotationHub bootstrap data_table doSNOW dplyr DT ExperimentHub fastcluster foreach fpc mzR OrgMassSpecR pastecs pracma RcppEigen reshape2 rvest smoother zoo]; }; - affxparser = derive2 { name="affxparser"; version="1.66.0"; sha256="1bd0f8ifj6l7dx2m3wpmd0mji2gdf39mzgcjf9lbvvmbqnbxbcal"; depends=[]; }; - affy = derive2 { name="affy"; version="1.72.0"; sha256="0z66pyn2020h3x22xabkmnjxb20kbgblivvk7mqjk9134wvvf15a"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; }; - affyContam = derive2 { name="affyContam"; version="1.52.0"; sha256="1vw3nxg9jvlw0zg9h70w2ww8l42qpyvgf12hsla9hyyfhj3m6i9f"; depends=[affy affydata Biobase]; }; - affyILM = derive2 { name="affyILM"; version="1.46.0"; sha256="18rnqmpgbmjy4pvian6g7q8r0xm827wvksy7y3pmi9m7af1dgnvv"; depends=[affxparser affy Biobase gcrma]; }; - affyPLM = derive2 { name="affyPLM"; version="1.70.0"; sha256="0mwfhz36qiirifrrgc2fcac1w1a1pfdb2474mgw13xk6xjvvgsab"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; - affycomp = derive2 { name="affycomp"; version="1.70.0"; sha256="0kawlfff82ikrbrfyyy38zm5wj5xdri2ii9wgwilnq50z5qc6r21"; depends=[Biobase]; }; - affycoretools = derive2 { name="affycoretools"; version="1.66.0"; sha256="1ccyaj129ii9f47r41qsy34y6ck4wna55j8vz3v3hbldddn93f40"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 Glimma GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; - affyio = derive2 { name="affyio"; version="1.64.0"; sha256="02lqdq8hcldkf9qbyhhllkm3smpqc51sn2d9gbkm74r96fx37lvm"; depends=[zlibbioc]; }; - affylmGUI = derive2 { name="affylmGUI"; version="1.68.0"; sha256="02fdivy8zh1vg8vxnhmf6hsn3kc6k5q115903kmzmf3zzvypyi57"; depends=[affy affyio affyPLM AnnotationDbi BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; }; - aggregateBioVar = derive2 { name="aggregateBioVar"; version="1.4.0"; sha256="1wbfp1pf62di6pzxsf36lmzk6y9dllz1n4iv3mhpb1x8cvy4hqqk"; depends=[Matrix rlang S4Vectors SingleCellExperiment SummarizedExperiment tibble]; }; - agilp = derive2 { name="agilp"; version="3.26.0"; sha256="02cyc2y4v3y16zlrnax2c96b2qfxj6b2j37ps4g2gdqgas08n9xp"; depends=[]; }; - airpart = derive2 { name="airpart"; version="1.2.0"; sha256="0289r5kkgndrbv9m3h2wwvc3j2j0yc8shq4di0nxy8kxaqng2nqa"; depends=[apeglm clue ComplexHeatmap dplyr dynamicTreeCut emdbook forestplot ggplot2 lpSolve matrixStats mclust pbapply plyr RColorBrewer rlang S4Vectors scater SingleCellExperiment smurf SummarizedExperiment]; }; - alevinQC = derive2 { name="alevinQC"; version="1.10.0"; sha256="1nbwdx4531pm72rcmd5mmpy2bybil7vkwn4zibccqvwgyi8745ma"; depends=[cowplot dplyr DT GGally ggplot2 rjson rlang rmarkdown shiny shinydashboard tximport]; }; - alpine = derive2 { name="alpine"; version="1.20.0"; sha256="0ddnk23ncmbm636fqclmcav2j3xqz25h1magdjv2x79hjz1hkqcq"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; }; - alsace = derive2 { name="alsace"; version="1.30.0"; sha256="17adr64g3l2syj0shi57nrvx105w7wrkiqm0qp3hwlk1ivmnadzn"; depends=[ALS ptw]; }; - altcdfenvs = derive2 { name="altcdfenvs"; version="2.56.0"; sha256="0awn93mcjrgim4rc5ayiy9x7zpdfrmvnxa33y68hjvghl5xqq57y"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; - amplican = derive2 { name="amplican"; version="1.16.0"; sha256="1p4n0bm4hsw20iyxghnc7k06q2w3hs044zsyl5ysd9xxiggi628l"; depends=[BiocGenerics BiocParallel Biostrings clusterCrit data_table dplyr GenomeInfoDb GenomicRanges ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats Rcpp rmarkdown S4Vectors ShortRead stringr waffle]; }; - animalcules = derive2 { name="animalcules"; version="1.10.0"; sha256="0l7lyw1a51piq20lh49ss4c2i75lrs1xq532jgf65n8vkm8asc88"; depends=[ape assertthat biomformat caret covr DESeq2 dplyr DT forcats ggplot2 glmnet GUniFrac lattice limma magrittr Matrix MultiAssayExperiment plotly plotROC rentrez reshape2 S4Vectors scales shiny shinyjs SummarizedExperiment tibble tsne umap vegan XML]; }; - annaffy = derive2 { name="annaffy"; version="1.66.0"; sha256="0crj37v571005brdd0ypfx2a7d1f829xxj2hahp2gy8aj9xm4s8l"; depends=[AnnotationDbi Biobase BiocManager DBI GO_db]; }; - annmap = derive2 { name="annmap"; version="1.36.99"; sha256="1q129ah96d1vz5d73a5xngz0fzh2zvq793xxha80r3lx2bgld7an"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; - annotate = derive2 { name="annotate"; version="1.72.0"; sha256="0p7q5hdk7003q72vg4hrgdzn463spybxhrkvcq3a6l6jkgy9sf84"; depends=[AnnotationDbi Biobase BiocGenerics DBI httr XML xtable]; }; - annotationTools = derive2 { name="annotationTools"; version="1.68.0"; sha256="0grdswbf8nj0qwl0n5pqsir9242dry85j6m688j81gwwjgmzidvh"; depends=[Biobase]; }; - annotatr = derive2 { name="annotatr"; version="1.20.0"; sha256="1ha2wn56cdab4p3wdwv4xlqjsgl7sd8phbx71qbclrbdwpq2mi7i"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; - anota = derive2 { name="anota"; version="1.42.0"; sha256="0agvcpb3lr9v55h53ywf662gpxayivxacv8dcm526cc8i8hdqa9f"; depends=[multtest qvalue]; }; - anota2seq = derive2 { name="anota2seq"; version="1.16.0"; sha256="0h03rbjnl16mn521fvxcn3d7ik5l52klwpjx45rk8js0alg5z4xf"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; - antiProfiles = derive2 { name="antiProfiles"; version="1.34.0"; sha256="0h9jvb579vy8744mmhg5m7964f24pwm4v02fivxq0z06ccbm79dm"; depends=[locfit matrixStats]; }; - apComplex = derive2 { name="apComplex"; version="2.60.0"; sha256="09014csh7wic7hsjri45ply2fkg93gq7xp4ckaj0yr4invjrw3m3"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; - apeglm = derive2 { name="apeglm"; version="1.16.0"; sha256="11w4vyc1sllmm5lh42krhidazid78n4s3lhikpy9kk2l57jmifbr"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; - appreci8R = derive2 { name="appreci8R"; version="1.12.1"; sha256="15dp3arq80cmqnbd7qnca7liy5hrmm96f5x9z1y9zkhpr0q6jpgv"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools rsnps S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; - aroma_light = derive2 { name="aroma.light"; version="3.24.0"; sha256="12qa85hsp8d1xhgn27iymknbhpnp9bd7hsgqxwvp1i8kki06z5hp"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; - arrayMvout = derive2 { name="arrayMvout"; version="1.52.0"; sha256="180bdk6p1lmd24ihc90b8r6dgr0vgclassgzblnwd95ya68a25xq"; depends=[affy affyContam Biobase lumi mdqc parody]; }; - arrayQuality = derive2 { name="arrayQuality"; version="1.72.0"; sha256="1qlg9xb17sgxfbsnxqs48qzmxc5fhchv5sszxxafkjd0pbfzkllv"; depends=[gridBase hexbin limma marray RColorBrewer]; }; - arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.50.0"; sha256="034xdnqvgwqy1wh17mmjzmhzj0iy8sdx4al0ngdxdfnxcjk4gfny"; depends=[affy affyPLM beadarray Biobase genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG svglite vsn XML]; }; - artMS = derive2 { name="artMS"; version="1.12.0"; sha256="0gaxd759zv273jh15l5zifh7k995sx8yda097lhjafdph7jmf0nh"; depends=[AnnotationDbi bit64 circlize cluster corrplot data_table dplyr getopt ggdendro ggplot2 ggrepel gplots limma MSstats openxlsx org_Hs_eg_db pheatmap plotly plyr RColorBrewer scales seqinr stringr tidyr UpSetR VennDiagram yaml]; }; - atSNP = derive2 { name="atSNP"; version="1.10.0"; sha256="0yy731ivpcrmjwpljxzvlk7n2pygydw2q58gq90d1midch1nf0lx"; depends=[BiocFileCache BiocParallel BSgenome data_table ggplot2 lifecycle motifStack rappdirs Rcpp testthat]; }; - atena = derive2 { name="atena"; version="1.0.5"; sha256="0w593x10xls1ypbagdwb7cpfjfdxcd98rm7c4i09qg5zdrwad476"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Matrix Rsamtools S4Vectors sparseMatrixStats SQUAREM SummarizedExperiment]; }; - attract = derive2 { name="attract"; version="1.46.0"; sha256="1vh6wgi6wmjry25khzbq32s67jjn581zjhhfqbl7y2dkfq2fvybf"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; - autonomics = derive2 { name="autonomics"; version="1.2.0"; sha256="1j0nsbdw7sahy031bvp8pg8a1fg7ql0is65d0mfh8345lbmr29sn"; depends=[abind assertive BiocFileCache BiocGenerics colorspace data_table edgeR ggplot2 ggrepel gridExtra limma magrittr matrixStats MultiAssayExperiment pcaMethods R_utils rappdirs readxl rlang S4Vectors scales stringi SummarizedExperiment tidyr]; }; - awst = derive2 { name="awst"; version="1.2.0"; sha256="0qxi4f7ngfsx17q9szhl95bhihcfx36bw4n175zyfdnac6cb9kap"; depends=[SummarizedExperiment]; }; - bacon = derive2 { name="bacon"; version="1.22.0"; sha256="13dhma34j9ggryainn4x6qvd3hphpxks5gf0mysia00r9hhpwwlc"; depends=[BiocParallel ellipse ggplot2]; }; - ballgown = derive2 { name="ballgown"; version="2.26.0"; sha256="0fiky82arvgzgxrm4bqn74m5kngqpdaqf6ks4cr89nlnhfq0v6rf"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; - bambu = derive2 { name="bambu"; version="2.0.6"; sha256="049pc2npfzmlxpnypi5gfvick5jq6yj6clwy388ijz9g3b50x5d9"; depends=[BiocGenerics BiocParallel BSgenome data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment tidyr xgboost]; }; - bamsignals = derive2 { name="bamsignals"; version="1.26.0"; sha256="03m3yaagplh7j4q5hp3cfcdqwsnh1pwrlla9cv3ajnfd83s8ncqv"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; - banocc = derive2 { name="banocc"; version="1.18.0"; sha256="0p5v601j1lkgh9prlvalp3xpqw87xq7ql0bak212443n15pfj3a4"; depends=[coda mvtnorm rstan stringr]; }; - barcodetrackR = derive2 { name="barcodetrackR"; version="1.2.0"; sha256="1z7sj2ykp34g9bf0x0s3qavrprbiaksgk5r4hsakb24jjbi65jnh"; depends=[circlize cowplot dplyr ggdendro ggplot2 ggridges magrittr plyr proxy RColorBrewer rlang S4Vectors scales shiny SummarizedExperiment tibble tidyr vegan viridis]; }; - basecallQC = derive2 { name="basecallQC"; version="1.18.0"; sha256="0nnrcjmmva6axnf3hqs8ga6sqwhfi5v27gdvqpdpc5h1sq4mx0vm"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; - basilisk = derive2 { name="basilisk"; version="1.6.0"; sha256="1cdkpngv9qybd9yxc3i2201p433vkkahs71v28x6lgs5l2wz3m1a"; depends=[basilisk_utils dir_expiry reticulate]; }; - basilisk_utils = derive2 { name="basilisk.utils"; version="1.6.0"; sha256="0578rq2yz24sv7anb7vp0a0y35944ag1l8ca6haanb03wl97wm99"; depends=[dir_expiry]; }; - batchelor = derive2 { name="batchelor"; version="1.10.0"; sha256="0axkic11bwjbw8apwxx6p51s7jvlwhq7xi1bdknn54k86axq84dr"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph Matrix Rcpp ResidualMatrix S4Vectors ScaledMatrix scuttle SingleCellExperiment SummarizedExperiment]; }; - bayNorm = derive2 { name="bayNorm"; version="1.12.0"; sha256="1rxg42a7dl69xfzparz9mzyjbx966z7h5nl54392h29x224hmckv"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Matrix Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; - baySeq = derive2 { name="baySeq"; version="2.28.0"; sha256="1zgxwb287ccz4wqsjxmffknnzziv12l4yrw7df912dxz6yccvd8r"; depends=[abind edgeR GenomicRanges]; }; - bcSeq = derive2 { name="bcSeq"; version="1.16.0"; sha256="03zmnlg83lx94ialdps3bsyaip4nzj06xvx0lvppippp6w6zg0z1"; depends=[Biostrings Matrix Rcpp]; }; - beachmat = derive2 { name="beachmat"; version="2.10.0"; sha256="1l8c9q35mf90ckb366bcfqa0v2gw7ahs2h362j7cwv8fp39h4mpb"; depends=[BiocGenerics DelayedArray Matrix Rcpp]; }; - beadarray = derive2 { name="beadarray"; version="2.44.0"; sha256="05m155air8a6s2awqmw4z6nfvm7zb58z4yp1967a1g1fygb3s9s2"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 hexbin illuminaio IRanges limma reshape2]; }; - beadarraySNP = derive2 { name="beadarraySNP"; version="1.60.0"; sha256="0ypx3ag1i6g2zp75waag9nf0wawhx9k73yfbvx533kd9acplbrbq"; depends=[Biobase quantsmooth]; }; - benchdamic = derive2 { name="benchdamic"; version="1.0.0"; sha256="1qrxhfg4fwr4gcs3zycksxxzjg4mjzcgqazn6907i00pfh3yi2pr"; depends=[ALDEx2 BiocParallel corncob cowplot DESeq2 edgeR ffpe ggdendro ggplot2 limma MAST metagenomeSeq MGLM phyloseq plyr RColorBrewer reshape2 Seurat SummarizedExperiment zinbwave]; }; - bgx = derive2 { name="bgx"; version="1.60.0"; sha256="0z3isnpyf9s11807dprxmd105lb0k4l7r1sygad30ncjvpldifzm"; depends=[affy Biobase gcrma Rcpp]; }; - bigPint = derive2 { name="bigPint"; version="1.10.0"; sha256="0b0l0v9p7a5da3x18d0pqn41ilgxfyzapjaawgsshcfm5mjq5d7q"; depends=[DelayedArray dplyr GGally ggplot2 gridExtra hexbin Hmisc htmlwidgets plotly plyr RColorBrewer reshape shiny shinycssloaders shinydashboard stringr SummarizedExperiment tidyr]; }; - bigmelon = derive2 { name="bigmelon"; version="1.20.0"; sha256="0ksbmybi8wsg515b4k9ij1xqqk9i90pyap2wq5w3c49qgc0pqali"; depends=[Biobase BiocGenerics gdsfmt GEOquery illuminaio methylumi minfi wateRmelon]; }; - bioCancer = derive2 { name="bioCancer"; version="1.22.0"; sha256="1iv7gvixbkfg1igac99ix1a6ah90fc8hsf2062ynazc9nsx9wh3k"; depends=[AlgDesign AnnotationDbi Biobase cgdsr clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier GO_db htmlwidgets org_Bt_eg_db org_Hs_eg_db plyr r_import radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; }; - bioDist = derive2 { name="bioDist"; version="1.66.0"; sha256="0y35c9sdq5x4q64ip0wgqz59mh01l71k1pp6n8vqbr667nwg0gdp"; depends=[Biobase KernSmooth]; }; - bioassayR = derive2 { name="bioassayR"; version="1.32.1"; sha256="0pa8d7p9asp36wddkg779i3b9m12rxik56c54bmclnammr0cz89i"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; - biobroom = derive2 { name="biobroom"; version="1.26.0"; sha256="034gbywrscv23kk1qnk7sc7dxdckmf60wh29fz65v1n28mkf180r"; depends=[Biobase broom dplyr tidyr]; }; - biobtreeR = derive2 { name="biobtreeR"; version="1.6.0"; sha256="0m9gx2g5ishbbh7aqp09mpknhr7q1v5ap0s6xp6ccj01pz2gkk8s"; depends=[httpuv httr jsonlite stringi]; }; - biocGraph = derive2 { name="biocGraph"; version="1.56.0"; sha256="0c7r0c1kx22dlwi6d1ldbkkbf53yi0p3vmgbwzrbkn3cina7bcxq"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; - biocViews = derive2 { name="biocViews"; version="1.62.1"; sha256="1v6himzp546dpb990vv0nlya21w8x2x30137rsmahjzg942nzs9r"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; }; - biocthis = derive2 { name="biocthis"; version="1.4.0"; sha256="0kh5lmv992v4r5r58x29403cll0zxr9fx4ar81nrzvnch5668v39"; depends=[BiocManager fs glue rlang styler usethis]; }; - biodb = derive2 { name="biodb"; version="1.2.2"; sha256="0b5zva16r4kz8736h3djjgmh35nxmlin4f374rb4i2s55zsrb638"; depends=[BiocFileCache chk jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; }; - biodbChebi = derive2 { name="biodbChebi"; version="1.0.1"; sha256="1f1bbfk0zp7x07vgnskd0wxb0zv2pvjk22cndw2zn7pgds0g9d9d"; depends=[biodb R6]; }; - biodbHmdb = derive2 { name="biodbHmdb"; version="1.0.3"; sha256="14pgyb4zjl65qpmj04zmlafi536rcwq9ngjx1m403k3fifa7ki9q"; depends=[biodb R6 Rcpp testthat]; }; - biodbKegg = derive2 { name="biodbKegg"; version="1.0.0"; sha256="16xmm3ymzd4jf55plahbxi844hpv0hpqq6v2ygcjf6wrs0yy2mhd"; depends=[biodb chk lifecycle R6]; }; - biodbLipidmaps = derive2 { name="biodbLipidmaps"; version="1.0.1"; sha256="14086f88r7mavpzp823mhpi4b9zq8q2kqxlwnmp02i03jj8mjnr8"; depends=[biodb lifecycle R6]; }; - biodbUniprot = derive2 { name="biodbUniprot"; version="1.0.0"; sha256="1aydkqqb8vs5b844ff1j09a7g8rmf7qr6rg2aw8nqshihq510v4d"; depends=[biodb R6]; }; - biomaRt = derive2 { name="biomaRt"; version="2.50.3"; sha256="01mv05fj5iqvjb5xz9k92kx1a9d95mprb6isy57n0x20vd3cxdx1"; depends=[AnnotationDbi BiocFileCache digest httr progress rappdirs stringr XML xml2]; }; - biomformat = derive2 { name="biomformat"; version="1.22.0"; sha256="0xf99j4lhf8kh9h1317hrbzxdv6rljs1fn68r8s40x6y4db3l817"; depends=[jsonlite Matrix plyr rhdf5]; }; - biomvRCNS = derive2 { name="biomvRCNS"; version="1.34.0"; sha256="01nhjhfyzs67p97bk9bjqdxk239ckl8sgfj55azk1zmw92aw2hfy"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; - biosigner = derive2 { name="biosigner"; version="1.22.0"; sha256="189018qahyw33dmg73wa7k4rp8nzrx6ai8f2dr6vhbpcdc1gnm0z"; depends=[Biobase e1071 MultiDataSet randomForest ropls]; }; - biotmle = derive2 { name="biotmle"; version="1.18.0"; sha256="0p3iavf9059qa8qvfvqzskfc5gki3z0ivkkqdwg5anvf0wv2k47g"; depends=[assertthat BiocGenerics BiocParallel dplyr ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tibble]; }; - biovizBase = derive2 { name="biovizBase"; version="1.42.0"; sha256="0kg71p7sqfvxal0c19zrws1ffaqgyi8p605l3z6mkq5ldi26pajz"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - biscuiteer = derive2 { name="biscuiteer"; version="1.8.0"; sha256="16ds322b21g8ys5c3lkrvi70i82f9rxvnknbiqx4sp6f2l01j5yj"; depends=[Biobase BiocGenerics BiocParallel biscuiteerData bsseq data_table DelayedMatrixStats dmrseq GenomeInfoDb GenomicRanges gtools HDF5Array Homo_sapiens impute Matrix matrixStats Mus_musculus QDNAseq qualV R_utils readr Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - blacksheepr = derive2 { name="blacksheepr"; version="1.8.0"; sha256="0j623s9vjxknqx3p3d2nbwiqqjp1326bbyvqjm75n1iyj33z1844"; depends=[circlize ComplexHeatmap pasilla RColorBrewer SummarizedExperiment viridis]; }; - blima = derive2 { name="blima"; version="1.28.0"; sha256="0z7xny4v0cypy49a0g38aj0ryh0lzfp9bf0qbzd5kv1yip6n16xq"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; - bluster = derive2 { name="bluster"; version="1.4.0"; sha256="1j24l12i3aga4qd827sj8b160yvrhlznggb4piddkmhjc0sppbjm"; depends=[BiocNeighbors BiocParallel cluster igraph Matrix Rcpp S4Vectors]; }; - bnbc = derive2 { name="bnbc"; version="1.16.0"; sha256="0vvv0pdcmyibl6km1avf3nj25xvpsk5jpw6kg08nqm9jg4h0v57m"; depends=[BiocGenerics data_table EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp rhdf5 S4Vectors SummarizedExperiment sva]; }; - bnem = derive2 { name="bnem"; version="1.2.0"; sha256="1pv9krjsa2siwbrlp6zlw2403mqdmarxfgc4m77fbz3j0y4gipgp"; depends=[affy binom Biobase CellNOptR cluster epiNEM flexclust graph limma matrixStats mnem RColorBrewer Rgraphviz rmarkdown snowfall sva vsn]; }; - brainflowprobes = derive2 { name="brainflowprobes"; version="1.8.0"; sha256="1y1lkr8klk9l22hmwqq3c9kkiyzy0mjp6fj63cb8zg653ib1sksw"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 bumphunter cowplot derfinder derfinderPlot GenomicRanges GenomicState ggplot2 RColorBrewer]; }; - branchpointer = derive2 { name="branchpointer"; version="1.20.0"; sha256="1rkfn8kdhkxq63n7llh3w7ydxdnzdbz7gd2f4bx7z9alp77lis1d"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; - breakpointR = derive2 { name="breakpointR"; version="1.12.0"; sha256="1c8kypcp5h6krsi1wbprslw7fivamjlcm02hfx5j5ni6skr0cs63"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; }; - brendaDb = derive2 { name="brendaDb"; version="1.8.0"; sha256="1yprf5hjzhfhzq71q8vzf45j0dakxbdr9rv166m0zs3nk5f75g3r"; depends=[BiocFileCache BiocParallel crayon curl dplyr magrittr purrr rappdirs Rcpp rlang stringr tibble tidyr xml2]; }; - bridge = derive2 { name="bridge"; version="1.58.0"; sha256="0qzniimw426vivslf0g99c508298cgwykhzrrjhnjc2bfan63iry"; depends=[rama]; }; - bsseq = derive2 { name="bsseq"; version="1.30.0"; sha256="1i30zf6457a0qd64s89x9l544y1h0hj9rfgf1m8l4krd487a9b9d"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 S4Vectors scales SummarizedExperiment]; }; - bugsigdbr = derive2 { name="bugsigdbr"; version="1.0.1"; sha256="1wrk9m4ja129d4al3w286hzg2gjcnq5riaa99q35psqcwm1bp94f"; depends=[BiocFileCache vroom]; }; - bumphunter = derive2 { name="bumphunter"; version="1.36.0"; sha256="0d5cz9xy7vhcaj5n3h4cfiv08sn7wn83458525pdwvdzzm449xgv"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; - cBioPortalData = derive2 { name="cBioPortalData"; version="2.6.1"; sha256="1sscczza5a2drm5h8h628nc8ajxx20gr48j2srli8a7c47lzyv6f"; depends=[AnVIL BiocFileCache digest dplyr GenomeInfoDb GenomicRanges httr IRanges MultiAssayExperiment RaggedExperiment readr RTCGAToolbox S4Vectors SummarizedExperiment TCGAutils tibble tidyr]; }; - cTRAP = derive2 { name="cTRAP"; version="1.12.0"; sha256="13q0pyc6vvxl41hg8cz4rdqrq0vppnna5fw2cin58dm2mayhd6p9"; depends=[AnnotationDbi AnnotationHub binr cowplot data_table dplyr DT fastmatch fgsea ggplot2 ggrepel highcharter htmltools httr limma pbapply purrr qs R_utils readxl reshape2 rhdf5 rlang scales shiny shinycssloaders tibble]; }; - caOmicsV = derive2 { name="caOmicsV"; version="1.24.0"; sha256="0snr67g9bqwyvrr1gxmgdjhrybgcpl38dwik583752sgdyf84c6p"; depends=[bc3net igraph]; }; - cageminer = derive2 { name="cageminer"; version="1.0.0"; sha256="140w8ccm5j5kl3gyn6437a2zqlzf5277k3g3c9i22n1jkdp947yn"; depends=[BioNERO GenomeInfoDb GenomicRanges ggbio ggplot2 ggtext IRanges reshape2]; }; - calm = derive2 { name="calm"; version="1.8.0"; sha256="1sq78fv4s6ja9yw84k20zl10pbkk8g2kf38p6nbxkhi4rvz8b5r2"; depends=[mgcv]; }; - canceR = derive2 { name="canceR"; version="1.28.04"; sha256="0si885h0nkfzvy3snhsp7638fdzc66l90hswd0va42d3ahq8hr8v"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase phenoTest plyr rpart RUnit survival tkrplot]; }; - cancerclass = derive2 { name="cancerclass"; version="1.38.0"; sha256="1kp764g9jms7r95wh58c4d1yli7xfvhfvi50x2s8rzi4bhi3zik6"; depends=[binom Biobase]; }; - casper = derive2 { name="casper"; version="2.28.0"; sha256="0z85zq5crf3806c16hv0gpv072k2bf7hdyhq958y33282wybr4zd"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; - categoryCompare = derive2 { name="categoryCompare"; version="1.38.0"; sha256="1175is4gr6nr393lk5ha2c3rqsdzsl1mfnhkajcym8n0927rx8n8"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; - cbaf = derive2 { name="cbaf"; version="1.16.0"; sha256="1xdl06arh5kwnp8159kbcrhlc19zlwk1srzk634jzp8pch9086da"; depends=[BiocFileCache cgdsr genefilter gplots openxlsx RColorBrewer]; }; - cbpManager = derive2 { name="cbpManager"; version="1.2.2"; sha256="0c906smvrf7lcc8jszdbz86mlhl8rnn49i4q56z1nx6wl1wz4j8w"; depends=[basilisk dplyr DT htmltools jsonlite magrittr markdown plyr rapportools reticulate rintrojs shiny shinyBS shinycssloaders shinydashboard vroom]; }; - ccfindR = derive2 { name="ccfindR"; version="1.14.0"; sha256="00xaspkckhnflkaj0wfs06kbz6y6cfshr1mq4zhh7yszppgqflzd"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rdpack Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; - ccmap = derive2 { name="ccmap"; version="1.20.0"; sha256="1z5lyv7m55wcncjlrqzflmp1jm2580k1pvajj3gjqif8kx477q3d"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; - ccrepe = derive2 { name="ccrepe"; version="1.30.0"; sha256="05wazs9bv4nlkzb3r98v31w0vpkv4071f9zw9dlh9jd8cm91ppk1"; depends=[infotheo]; }; - ceRNAnetsim = derive2 { name="ceRNAnetsim"; version="1.6.99"; sha256="1309ccqq3p970p5v0b2syqv91vs2d0svij0xdqzr6g46sazgkrr7"; depends=[dplyr furrr future ggplot2 ggraph igraph purrr rlang tibble tidygraph tidyr]; }; - celaref = derive2 { name="celaref"; version="1.12.0"; sha256="0rxcy7sw1l2r8j1sralvqwl7ml2hf6x74qmfam87s6gal021z6qj"; depends=[BiocGenerics DelayedArray dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; - celda = derive2 { name="celda"; version="1.10.0"; sha256="1qlkkh1h6pjv6rjk5p50iq1dhzn1l6sqnm61y6jlg1hqkdc76wbb"; depends=[circlize ComplexHeatmap data_table dbscan DelayedArray digest doParallel enrichR foreach ggplot2 ggrepel gtable Matrix matrixStats MCMCprecision multipanelfigure plyr RColorBrewer Rcpp RcppEigen reshape2 Rtsne S4Vectors scales scater scran SingleCellExperiment stringr SummarizedExperiment uwot withr]; }; - cellHTS2 = derive2 { name="cellHTS2"; version="2.58.0"; sha256="0h5vif8xi7axfh41mmp0b8zm1r07mnlnqq6bp0fkwqyas7gbzahh"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit RColorBrewer splots vsn]; }; - cellTree = derive2 { name="cellTree"; version="1.24.0"; sha256="1jdspwhimzj2bdjip6jbmqdyxsj8grr7nd6h31b3abs3sk19khy8"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; - cellbaseR = derive2 { name="cellbaseR"; version="1.18.0"; sha256="1hsm3yd8zjzym2xh6isikvm5nx3jvfsbq6m34x3i3ash8hgg9022"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; - cellity = derive2 { name="cellity"; version="1.22.0"; sha256="18nivw8c2iv6ibp6hj2m0f04qb28dcq3ya1imfwsvanm9qb2z8zr"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; - cellmigRation = derive2 { name="cellmigRation"; version="1.2.0"; sha256="0wwfp4jffdxjhzpjpa9136i7ji7bkgbmkdrc4k058kwncv65iajp"; depends=[doParallel FactoMineR FME foreach Hmisc matrixStats reshape2 sp SpatialTools tiff vioplot]; }; - cellscape = derive2 { name="cellscape"; version="1.18.0"; sha256="1p8ib244yxfzl5xswl1ifhj7grc8435npw82kmj5vqg8mqbkhgh7"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; - censcyt = derive2 { name="censcyt"; version="1.2.1"; sha256="0sd412jhhgax0szslks8bmg81yrqs3hj54ahdgsnbqf846kccrzw"; depends=[BiocParallel broom_mixed diffcyt dirmult dplyr edgeR fitdistrplus lme4 magrittr MASS mice multcomp purrr rlang S4Vectors stringr SummarizedExperiment survival tibble tidyr]; }; - cfDNAPro = derive2 { name="cfDNAPro"; version="1.0.0"; sha256="0klzwax2wblcq8j51ig7qkxml7yb3qc2p66g2ds8sfai0y3hslf9"; depends=[dplyr ggplot2 magrittr quantmod rlang Rsamtools stringr]; }; - cghMCR = derive2 { name="cghMCR"; version="1.52.0"; sha256="1j3pdj1c5wpl0mmirbssysval6fh2vyfb4d6w6jkqikchbcal8pk"; depends=[BiocGenerics CNTools DNAcopy limma]; }; - chimeraviz = derive2 { name="chimeraviz"; version="1.20.0"; sha256="0gsd2bwjzh6f8gqclnhm8gq2q3c1ddp4qqflmbgfk16jja8516va"; depends=[AnnotationDbi AnnotationFilter BiocStyle Biostrings checkmate data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges magick org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; - chipenrich = derive2 { name="chipenrich"; version="2.18.0"; sha256="1nyb79hw5k15vs2vxcfc13ypvqz01khsva56yalcnkb8y2am4gyn"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra MASS mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; - chipseq = derive2 { name="chipseq"; version="1.44.0"; sha256="1jw209bfh1c22mqs9z44qx3pmca9m68rhxp0p9bvbmqsnqwrndi6"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; - chopsticks = derive2 { name="chopsticks"; version="1.60.0"; sha256="08v9kkqx3ylhcrj00s909v8ij0mskphd7pi1m7kixs90bisvhhw7"; depends=[survival]; }; - chromDraw = derive2 { name="chromDraw"; version="2.24.0"; sha256="11vvk3m2av7dffwlbg74xlk5f50r1b6fijv820875b7sxhfhxy7x"; depends=[GenomicRanges Rcpp]; }; - chromPlot = derive2 { name="chromPlot"; version="1.22.0"; sha256="190h1906007wm14y0ra1nnanacig0yrhcpmnpbanzl68gmjhvalh"; depends=[biomaRt GenomicRanges]; }; - chromVAR = derive2 { name="chromVAR"; version="1.16.0"; sha256="0ylsfr540l763bh010irbcavlskahyb1769pppimdgn22gyr3spk"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; - chromstaR = derive2 { name="chromstaR"; version="1.20.2"; sha256="1akcmxzn4j9ph4n3lsgfh8fh8hrb28jjamz037w59bsdkcv6wyjq"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; - chromswitch = derive2 { name="chromswitch"; version="1.16.0"; sha256="0mb26jhrkd99akrfsnx5ziszmwv3ydc6sp140s1wh6jwn6qjws73"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; - cicero = derive2 { name="cicero"; version="1.12.0"; sha256="1fc69nkm2cwpr6gkfmra2ph0lrmw486chswp4pn8i70ia43fzdm7"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringi stringr tibble tidyr VGAM]; }; - circRNAprofiler = derive2 { name="circRNAprofiler"; version="1.8.0"; sha256="0l83r9idhrha1m21vpnw917m5dlldji49zvx4d25m5g3ia1pkhpf"; depends=[AnnotationHub Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 gwascat IRanges magrittr R_utils readr reshape2 rlang rtracklayer S4Vectors seqinr stringi stringr universalmotif]; }; - cisPath = derive2 { name="cisPath"; version="1.34.0"; sha256="1gr3p89zb454rkvjikfpsqrhiyn7lymfni6m8jwwlv3yxfk80n2z"; depends=[]; }; - cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.32.0"; sha256="0rcfnqdcvw5na1x27iyp8zkzv3x219j8j8k13kkchv1z43q0a9zp"; depends=[Biostrings BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomeInfoDb GenomicRanges IRanges seqinr stringr]; }; - cleaver = derive2 { name="cleaver"; version="1.32.0"; sha256="0r2n787qws638h3cclhl1idfvqm64640s9xi6g85269hzx4cfgf0"; depends=[Biostrings IRanges S4Vectors]; }; - cliProfiler = derive2 { name="cliProfiler"; version="1.0.0"; sha256="1hkq0dyd2d9v3f0567n3jy66xaj0gzg0ig2hdj8g5dbbxbspbr3r"; depends=[Biostrings BSgenome dplyr GenomicRanges ggplot2 rtracklayer S4Vectors]; }; - clippda = derive2 { name="clippda"; version="1.44.0"; sha256="1c0hjj1lcnyrwwvkb2s0g3dm2sgfr35sbxkfiqhnylrqq9akpi2y"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; - clipper = derive2 { name="clipper"; version="1.34.0"; sha256="0110jdpc24fnj2wb3zmvihsfkyk9d0lv3bm7bcf3nlyj3h7ibkwn"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; - cliqueMS = derive2 { name="cliqueMS"; version="1.8.0"; sha256="1r5appv1k73pngsawfah25wvj8xkyrzr63f7iq7hzdin6d7yxp54"; depends=[BH igraph matrixStats MSnbase qlcMatrix Rcpp RcppArmadillo xcms]; }; - clonotypeR = derive2 { name="clonotypeR"; version="1.32.1"; sha256="1fxhv3g7hz4yihrwcr0gb8z2n48al5jx9ilb82rwy67f82g5f3af"; depends=[]; }; - clst = derive2 { name="clst"; version="1.42.0"; sha256="1da3mw445bv9mr59wpnjw2zk0avrbrwannrc5jmwxd4sdiy33f2r"; depends=[lattice ROC]; }; - clstutils = derive2 { name="clstutils"; version="1.42.0"; sha256="0zbyppajhkzims3cb631ylfl132a07b1w91kp3ba6hg4f7zxw06q"; depends=[ape clst lattice rjson RSQLite]; }; - clustComp = derive2 { name="clustComp"; version="1.22.0"; sha256="0n1qpjxffx8jm8m3gw891irpzagpi91r46xa6iznsskh8nhmh44y"; depends=[sm]; }; - clusterExperiment = derive2 { name="clusterExperiment"; version="2.14.0"; sha256="0riray1f841d5fx6mbcki5xmqz21kg5q5l0qz4pkgg9c1d9f7mbc"; depends=[ape BiocGenerics BiocSingular cluster DelayedArray edgeR HDF5Array howmany kernlab limma locfdr Matrix matrixStats mbkmeans NMF phylobase pracma RColorBrewer Rcpp S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; - clusterProfiler = derive2 { name="clusterProfiler"; version="4.2.2"; sha256="1y8ay3fxvcc7a7yqvfc95jfn800ikvs56j17byyp6v08w2j00y76"; depends=[AnnotationDbi DOSE downloader dplyr enrichplot GO_db GOSemSim magrittr plyr qvalue rlang tidyr yulab_utils]; }; - clusterSeq = derive2 { name="clusterSeq"; version="1.18.0"; sha256="1qyycc8wrik54bc2rvzisv6p05jnh1kf68jafqgw9lqpp5gk40bl"; depends=[baySeq BiocGenerics BiocParallel]; }; - clusterStab = derive2 { name="clusterStab"; version="1.66.0"; sha256="1863jpdwx27snpil38waj3zr0w2m0q7xj8g1zm8c5cbx9as1cwkd"; depends=[Biobase]; }; - clustifyr = derive2 { name="clustifyr"; version="1.6.0"; sha256="1jz6wfv1b585yf6m9f265ig29p5qxilri40lnpry6h0am2s72xr3"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy readr rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; - cmapR = derive2 { name="cmapR"; version="1.6.0"; sha256="0zk96k6z80zkd4q6s4fcn21vmz6y17bfa1sqllvyn3zy237gj132"; depends=[data_table flowCore matrixStats rhdf5 SummarizedExperiment]; }; - cn_farms = derive2 { name="cn.farms"; version="1.42.0"; sha256="062rp52r1wv5wiqjvp0rsjfzqyjgh4v73iir77ivmmimsydv38lm"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; - cn_mops = derive2 { name="cn.mops"; version="1.40.0"; sha256="1ibmm87x0wi93ss1p2vmaxwa1xncqx63q42zf7fppmmdgfn4rcvg"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; - cnvGSA = derive2 { name="cnvGSA"; version="1.38.0"; sha256="0gnpdbnj3wi9jbi0bkz0kiynl9dc0p1vg26xv8xq3cqpb3ppjnqd"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; - coGPS = derive2 { name="coGPS"; version="1.38.0"; sha256="0qjsz8n791x10w1a6p68cdp3ch4c1v45b8pfvx774jjh52i9v6qp"; depends=[]; }; - coMET = derive2 { name="coMET"; version="1.26.0"; sha256="0n4fhhx27qrqs855qjx6ng7xdgcxlv3krj5sy4sxrhsahslad9v4"; depends=[biomaRt colortools corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; - coRdon = derive2 { name="coRdon"; version="1.12.0"; sha256="1m5k0cp61x50izgpb748h8dh2ab98i3vlsf63lhcvhvirind96fw"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr stringr]; }; - codelink = derive2 { name="codelink"; version="1.62.0"; sha256="13ydy59qk5walsifyl8gfd181wbkf1jam3242407fsskw5ia4kfv"; depends=[annotate Biobase BiocGenerics limma]; }; - cogena = derive2 { name="cogena"; version="1.28.0"; sha256="077cmcsqvc2d26ywm6537l538pnn9473sh3q0z91zvmw0886iava"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2 stringr tibble tidyr]; }; - cola = derive2 { name="cola"; version="2.0.0"; sha256="13ibslqhqa0xgg79n3cbgpmzlhf9nhibn4wm4mdcyxarxlqlqrsh"; depends=[BiocGenerics brew circlize clue cluster ComplexHeatmap crayon digest doParallel eulerr foreach GetoptLong GlobalOptions httr impute irlba knitr markdown matrixStats mclust microbenchmark png RColorBrewer Rcpp skmeans xml2]; }; - combi = derive2 { name="combi"; version="1.6.0"; sha256="0wca0wjmyr0jfy366b2xqfk56qd1y2s43ccbnhbzmvaj7hafnnbc"; depends=[alabama BB Biobase cobs ggplot2 limma Matrix nleqslv phyloseq reshape2 SummarizedExperiment tensor vegan]; }; - compartmap = derive2 { name="compartmap"; version="1.12.0"; sha256="0dhkrskw1hb2vxq3dkxl6ccf0mxpydszpd7d6lpqrk2x62i7hhk5"; depends=[BiocSingular DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array Matrix RaggedExperiment reshape2 RMTstat rtracklayer scales SummarizedExperiment]; }; - compcodeR = derive2 { name="compcodeR"; version="1.30.0"; sha256="0793wkv967w5sicg4spx1mw48pgn18rwb7wkcqc98sc7d0fvi1vb"; depends=[caTools edgeR ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; }; - conclus = derive2 { name="conclus"; version="1.2.0"; sha256="1c4n4ybm0ppd83ydhxghs5kv93djqxin0ppkg4n6rbjw7m9qx1p2"; depends=[AnnotationDbi Biobase BiocFileCache biomaRt clusterProfiler dbscan doParallel dplyr factoextra foreach fpc GEOquery ggplot2 gridExtra pheatmap Rtsne scales scater scran SingleCellExperiment stringr SummarizedExperiment]; }; - condiments = derive2 { name="condiments"; version="1.2.0"; sha256="00328ql84ry1fnfdmjn46f5q4ifbr8bbgrmvbdg6mvcmy27sqgab"; depends=[BiocParallel dplyr Ecume igraph magrittr matrixStats mgcv pbapply RANN SingleCellExperiment slingshot SummarizedExperiment TrajectoryUtils]; }; - consensus = derive2 { name="consensus"; version="1.12.0"; sha256="1jxmxvw5wak9arj5b986k44h7xx1wiwdqn0lvkik47yzim53bclc"; depends=[gplots matrixStats RColorBrewer]; }; - consensusDE = derive2 { name="consensusDE"; version="1.12.0"; sha256="032qb4ni2q4k2ja8bjgqdgccrcccnjsl0lfiykizzbpma52k3knw"; depends=[airway AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings data_table dendextend DESeq2 EDASeq edgeR EnsDb_Hsapiens_v86 ensembldb GenomicAlignments GenomicFeatures limma org_Hs_eg_db pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; - consensusOV = derive2 { name="consensusOV"; version="1.16.0"; sha256="0rgk2674pbwxiqhj75yl283inr7bdhi9ndy48nm4553x6gv8bv20"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; - consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.22.0"; sha256="1ckq96jw2g7zc2xwpi83qdik0d63qf8jrn24cx6pmm5zpnrcpv2i"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; - contiBAIT = derive2 { name="contiBAIT"; version="1.22.0"; sha256="19pbn2yr0fry9z8n153xjnz9d5m82mvyad67ys6zn566474ygjfa"; depends=[BH BiocGenerics BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; - conumee = derive2 { name="conumee"; version="1.28.0"; sha256="0f7lji7880kqw4y24w7nwz3cd6pky3pk37mkwy8frb44zlyqzf2j"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; - convert = derive2 { name="convert"; version="1.70.0"; sha256="0ylqsj754ykr72xwc27gary3wxvrnl9ahflcnrnsg59fzlpr5i5w"; depends=[Biobase limma marray]; }; - copa = derive2 { name="copa"; version="1.62.0"; sha256="062ljzp597xr0lh8wniq0h6hzim0741slf6xg196agcjn2q3bs7d"; depends=[Biobase]; }; - copynumber = derive2 { name="copynumber"; version="1.34.0"; sha256="143ifvjkjz0392drm82xmpj1f8b5pc2dyyxyc9dkqmay8lf1n534"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; - corral = derive2 { name="corral"; version="1.4.0"; sha256="1mmiwqjqgm53x0ginv3gqxz0wf08yv70p9m0flarx9n6k3ri3bwb"; depends=[ggplot2 ggthemes gridExtra irlba Matrix MultiAssayExperiment pals SingleCellExperiment SummarizedExperiment transport]; }; - coseq = derive2 { name="coseq"; version="1.18.0"; sha256="0g3bningjbnjys7ksdxx68lnp7qfg2fwpp2m82s61rpyb06j5v4r"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; - cosmiq = derive2 { name="cosmiq"; version="1.28.0"; sha256="0b0d7d7fdf0rgkrpp92n6k1vkxswm63p1qmqb3b2c0nwpj68ybph"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; - cosmosR = derive2 { name="cosmosR"; version="1.2.0"; sha256="0y1a3yr23zbyg0b7yl7rbbfn930g72fpw8dz6vcfz73yjj6psxv1"; depends=[AnnotationDbi biomaRt CARNIVAL dorothea dplyr ggplot2 GSEABase igraph magrittr org_Hs_eg_db plyr purrr readr rlang scales stringr tibble visNetwork]; }; - countsimQC = derive2 { name="countsimQC"; version="1.12.1"; sha256="1ayjhbh6dc8grnizgc77460qn24ll3brybp8p7j2wmpc97dhs6kr"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 randtests rmarkdown SummarizedExperiment tidyr]; }; - covEB = derive2 { name="covEB"; version="1.20.0"; sha256="0r0b1hih0wijcpn2xxjq56z185a5ij3l49g6wxbp5kcd7w5apmhp"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; - covRNA = derive2 { name="covRNA"; version="1.20.0"; sha256="16d5pdq2zhymxpv1xx66bb8kn037559mbp3lrcmhddy46xb519cv"; depends=[ade4 Biobase genefilter]; }; - cpvSNP = derive2 { name="cpvSNP"; version="1.26.0"; sha256="1z3lzj2izqmy1m8y73za4pfk158rfxbs8janvq776aqzcaa5pf0k"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; - cqn = derive2 { name="cqn"; version="1.40.0"; sha256="0bipwwscnifnwkgqayjg2pc2c50vykrfnyxxgxjbadlpaqar324a"; depends=[mclust nor1mix preprocessCore quantreg]; }; - crisprseekplus = derive2 { name="crisprseekplus"; version="1.20.0"; sha256="0bmx17mwl7w5fchgszbm5vh9ivnq5c6jvaz21srfnpxfcw5mpfji"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; - crlmm = derive2 { name="crlmm"; version="1.52.0"; sha256="1nrfr4kkfh7fab8v6w70dxdlxhfpkrfxz6px95wmrjlqpkp6acdb"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen VGAM]; }; - crossmeta = derive2 { name="crossmeta"; version="1.20.0"; sha256="1xfxjis5rl4mzlyzqsw9wjn75gd33i1f9658vy7vzs0grkjhx2m4"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager data_table DBI DESeq2 DT edgeR fdrtool GEOquery limma matrixStats metaMA miniUI oligo RColorBrewer RCurl reader readxl RSQLite shiny shinyBS shinyjs shinypanel shinyWidgets statmod stringr SummarizedExperiment sva tibble XML]; }; - csaw = derive2 { name="csaw"; version="1.28.0"; sha256="0vwrwkwc30gb5x17sl1vkphf0qn6ib6387q9r3axqcyj1swf2wzq"; depends=[BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicRanges IRanges limma Matrix metapod Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; - csdR = derive2 { name="csdR"; version="1.0.0"; sha256="1qgzpg14acag2rnr5606672lzxfipi5xqr3jcjl9bhmsq4g1mcqh"; depends=[glue matrixStats Rcpp RhpcBLASctl WGCNA]; }; - ctc = derive2 { name="ctc"; version="1.68.0"; sha256="1yq5igwzcwfhxy49qf3pralpikiqq7sqr1cig8mkpjpaj5bbaayx"; depends=[amap]; }; - ctgGEM = derive2 { name="ctgGEM"; version="1.6.0"; sha256="03ba8vqxlxf8j1ifiz4ak3fjdjq1y11zw561j7knp37l8r8zy852"; depends=[Biobase BiocGenerics igraph Matrix monocle sincell SummarizedExperiment TSCAN]; }; - ctsGE = derive2 { name="ctsGE"; version="1.20.0"; sha256="1hyy1mc72qmkv3gc80jrz3crj0yc2cig5bl91vhbxgn2a0wrxs3a"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; - cummeRbund = derive2 { name="cummeRbund"; version="2.36.0"; sha256="0130hrlz2jabbshis1g11ndda8b8vlirzi7a004li3cgdghscxql"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; - customCMPdb = derive2 { name="customCMPdb"; version="1.4.0"; sha256="0g8q63byqydppbcmbkm9n9pbl55k3mkfzdcipvypnyxz2fl2r0aj"; depends=[AnnotationHub BiocFileCache ChemmineR rappdirs RSQLite XML]; }; - customProDB = derive2 { name="customProDB"; version="1.34.0"; sha256="08q6cmxkqlhk1v8xmya4afnhsxgki8qk15xwmsa465kdgz0pcr5c"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; - cyanoFilter = derive2 { name="cyanoFilter"; version="1.2.0"; sha256="011xx93clmz9g9mb9grm3g6kplx5lf11aww0a9k6z970gx528hd0"; depends=[Biobase cytometree flowClust flowCore flowDensity GGally ggplot2 mrfDepth]; }; - cycle = derive2 { name="cycle"; version="1.48.0"; sha256="1zcxvf41ick80pi929vabbs632dml2rcxwjzz5z5pvz9ppm70vab"; depends=[Biobase Mfuzz]; }; - cydar = derive2 { name="cydar"; version="1.18.0"; sha256="0wsfcwfsm7lf6q13cgcwg189zjabdxnlaqbdb6gh1pk27mh3s70g"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; - cytoKernel = derive2 { name="cytoKernel"; version="1.0.0"; sha256="1n48bz8ainax53m6d5i5zyjlja3v5nv9vhx45r5746sr9rppbljw"; depends=[ashr BiocParallel circlize ComplexHeatmap data_table dplyr magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; - cytolib = derive2 { name="cytolib"; version="2.6.2"; sha256="0ycr4wmkfi0rvzwicblkfjgppk72gwwpim0rfiz1s44lycsf4py5"; depends=[BH Rcpp RcppArmadillo RcppParallel Rhdf5lib RProtoBufLib]; }; - cytomapper = derive2 { name="cytomapper"; version="1.6.0"; sha256="0vmklch5g82pbhpax2flizglyndhs1dmdq015wclj0a9wyflzn6d"; depends=[BiocParallel DelayedArray EBImage ggbeeswarm ggplot2 HDF5Array matrixStats raster RColorBrewer rhdf5 S4Vectors shiny shinydashboard SingleCellExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; - dStruct = derive2 { name="dStruct"; version="1.0.0"; sha256="0sy05n0zgd9d8jm352drw7xbcd37ghxzq7fwc3icm8hgqfx43qyk"; depends=[ggplot2 IRanges purrr reshape2 rlang S4Vectors zoo]; }; - daMA = derive2 { name="daMA"; version="1.66.0"; sha256="0m7192md5956mbklw0j7z0b82inr6h0p2c9vvjsmd5ivlbz1zdri"; depends=[MASS]; }; - dada2 = derive2 { name="dada2"; version="1.22.0"; sha256="1mj2fiqanr8lp1883bali00la38d9g1krqz9v7f396s1f5x8yll6"; depends=[BiocGenerics Biostrings ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; - dagLogo = derive2 { name="dagLogo"; version="1.32.0"; sha256="1gqb56zg11cl7ldww15zmn09f1f5i60mshwrv7gsb3yc79zs48s1"; depends=[BiocGenerics biomaRt Biostrings motifStack pheatmap UniProt_ws]; }; - dasper = derive2 { name="dasper"; version="1.4.3"; sha256="0rry987mmwrrg15wm5vwmwds2dk6vqpvayvkhzgw2zm5gabis27n"; depends=[basilisk BiocFileCache BiocParallel data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyranges readr reticulate rtracklayer S4Vectors stringr SummarizedExperiment tidyr]; }; - dcGSA = derive2 { name="dcGSA"; version="1.22.0"; sha256="0j697q02zys9brmc7xn1yh7lir7k1m7hlr752ykydqx9qzzw0m77"; depends=[BiocParallel Matrix]; }; - dcanr = derive2 { name="dcanr"; version="1.10.0"; sha256="0xrfdwcs4qxgasm318nd2cdqmr9ksaxig1frs8h6a7lg8wvh5f2x"; depends=[circlize doRNG foreach igraph Matrix plyr RColorBrewer reshape2 stringr]; }; - dce = derive2 { name="dce"; version="1.2.0"; sha256="0wzi9hv975ib7nvd6qqnlhzfzgx9wydxxs1pkklzzgwlwm4gr971"; depends=[assertthat CombinePValue dplyr edgeR epiNEM expm ggplot2 ggraph glm2 glue graph graphite harmonicmeanp igraph logger MASS Matrix metap mnem naturalsort org_Hs_eg_db pcalg ppcor purrr reshape2 Rgraphviz rlang tidygraph tidyverse]; }; - ddCt = derive2 { name="ddCt"; version="1.50.0"; sha256="1qzgahnn9q4dmixhhaal1jv5p5jb5vm0hark1npvv3ya2jqpndp4"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; - ddPCRclust = derive2 { name="ddPCRclust"; version="1.14.0"; sha256="13s2h8bfd6i6shbm9iwlz99nvyif6c934ccgkdihgbxfq2zacmdj"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; - dearseq = derive2 { name="dearseq"; version="1.6.0"; sha256="07vr27rv3z86ajd62c0ilvfgz9z35qsiwwi5pv4sygbhnnjwh3rc"; depends=[ggplot2 KernSmooth matrixStats patchwork pbapply statmod survey viridisLite]; }; - debCAM = derive2 { name="debCAM"; version="1.12.0"; sha256="1nqc2r9wr4q71zsya0ylwkxc91sqa4zkal26wiv5h10bk5nxig5r"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; - debrowser = derive2 { name="debrowser"; version="1.22.5"; sha256="1aqjnq13yvgw0rjq90l7kgf8c56fhjxhv7r3g1xa5pbdqzfdbv99"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; - deco = derive2 { name="deco"; version="1.10.0"; sha256="1bvn5wipvyxy5h74wl1433pv5lzdp82m8yxwr3b8cljnlqcqh9da"; depends=[ade4 AnnotationDbi Biobase BiocParallel BiocStyle cluster foreign gdata ggplot2 gplots gridExtra limma locfit made4 RColorBrewer reshape2 scatterplot3d sfsmisc SummarizedExperiment]; }; - decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.10.0"; sha256="125913q735vazmlnvg8vdca8j88y0mx24zdlqzsgzw9ylkwbq86p"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - decontam = derive2 { name="decontam"; version="1.14.0"; sha256="0k8rp91ap3dwzhhhg3s7ikbphxvgha7m118ayrghshp8929g3cdm"; depends=[ggplot2 reshape2]; }; - deconvR = derive2 { name="deconvR"; version="1.0.1"; sha256="1ibp59d0q8bax7rphg140jb5ylkhmaa4lmc0khqffq440j9fnrr5"; depends=[assertthat BiocGenerics data_table dplyr e1071 foreach GenomicRanges IRanges magrittr MASS matrixStats methylKit nnls quadprog rsq S4Vectors tidyr]; }; - decoupleR = derive2 { name="decoupleR"; version="2.0.1"; sha256="0d4jl94598rxzw4y0qs2g4c67dhlsnlzj01qqcmi156am3a13pkr"; depends=[broom dplyr magrittr Matrix purrr rlang stringr tibble tidyr tidyselect withr]; }; - deepSNV = derive2 { name="deepSNV"; version="1.40.0"; sha256="1wi6j6yb6i9fs9yszfywqz3w50mhl85dkfmr4w3phwvkf0xkn81w"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; - deltaCaptureC = derive2 { name="deltaCaptureC"; version="1.8.0"; sha256="1gfh788xxamsf919bznwl1n5ycd81bcxw4mxcsib46fqmzxgh7vh"; depends=[DESeq2 GenomicRanges ggplot2 IRanges SummarizedExperiment tictoc]; }; - deltaGseg = derive2 { name="deltaGseg"; version="1.34.0"; sha256="090bkkd0sxkjxnparn7jyi59rk18vd3nid2sw66malvc4zx0b22y"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; - densvis = derive2 { name="densvis"; version="1.4.0"; sha256="0h4j307zw0hxpi8fpm86x3l6nq514y94gvn3qyc5hp6b521f4frd"; depends=[assertthat basilisk Rcpp reticulate]; }; - derfinder = derive2 { name="derfinder"; version="1.28.0"; sha256="1hxf40ijrlmyrv3rprv5wx3am2vraplbsfg77kk9qd3gjq6q3ylp"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; - derfinderHelper = derive2 { name="derfinderHelper"; version="1.28.0"; sha256="06x0wy2wzpngak1pnrj2p0xzlx1nbcz0hs3p9q5ic6ib2rgwrh35"; depends=[IRanges Matrix S4Vectors]; }; - derfinderPlot = derive2 { name="derfinderPlot"; version="1.28.1"; sha256="021w4vb8al3gc6rsc6qgywd5wxmysf2jif7cazxl4xhh37g1anni"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; - destiny = derive2 { name="destiny"; version="3.8.1"; sha256="1f2mp2sxbf1zi61npj5rl5pl7z30rkj5953521iiv0w99mdfwhsc"; depends=[Biobase BiocGenerics ggplot_multistats ggplot2 ggthemes irlba knn_covertree Matrix pcaMethods proxy Rcpp RcppEigen RcppHNSW RSpectra scales scatterplot3d SingleCellExperiment smoother SummarizedExperiment tidyr tidyselect VIM]; }; - diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.76.0"; sha256="1aprngqc2aqdw91q9c57y15xpkm4da4czf8ki55vnyngb9nlpabp"; depends=[minpack_lm]; }; - diffHic = derive2 { name="diffHic"; version="1.26.0"; sha256="0xhm6jgalgb2v8k99k1z99rwhcaqjhhklm5ih8b6ayfmgmf6x7ih"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; - diffUTR = derive2 { name="diffUTR"; version="1.2.0"; sha256="0lmsbaaqzzvk25bxjb8ngvx0l5aqsmk7nng5kv4nghm7y7ipp1gf"; depends=[ComplexHeatmap DEXSeq dplyr edgeR ensembldb GenomeInfoDb GenomicRanges ggplot2 ggrepel IRanges limma matrixStats Rsubread rtracklayer S4Vectors stringi SummarizedExperiment viridisLite]; }; - diffcoexp = derive2 { name="diffcoexp"; version="1.14.0"; sha256="0j32si3bn47qabvzgzvc3a081r0ia1k2r3h4i4wh0gmz4yh29l4a"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; - diffcyt = derive2 { name="diffcyt"; version="1.14.0"; sha256="1yc9mlc0ifb7h6rzskq97bsdq1kwdp5qq9l9mciwyxf6yjkmv5ni"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; - diffloop = derive2 { name="diffloop"; version="1.22.0"; sha256="1i2ri1cxsqwqc6fhnbkvdwqbgyfd407wn0qidq7nrqcamli8acvs"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; }; - diffuStats = derive2 { name="diffuStats"; version="1.14.0"; sha256="014bk8fg3yhkrwass4zm5bisdf2m7mdcriykpzybzpgfy66d7mls"; depends=[checkmate expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; - diggit = derive2 { name="diggit"; version="1.26.0"; sha256="19phk2qdc5a6r1g9awjm1icnq96sj3nd8m2cylr3d3qamkxvdhyy"; depends=[Biobase ks viper]; }; - dir_expiry = derive2 { name="dir.expiry"; version="1.2.0"; sha256="1bwmlxmizhmim2l0mk406hxfr5mnmsg5zbqkjyygaipa971m9s00"; depends=[filelock]; }; - discordant = derive2 { name="discordant"; version="1.18.0"; sha256="0r536qgd8v85rnzk1x3x85fnrs8wc6nm4dp25h7n6bj3j6mw6fjm"; depends=[Biobase biwt gtools MASS]; }; - distinct = derive2 { name="distinct"; version="1.6.0"; sha256="029wp2ag67w6d2pc9wzj3kjznfvc4y9rs4vcj54ncv6sd78il1kn"; depends=[doParallel doRNG foreach ggplot2 limma Matrix Rcpp RcppArmadillo scater SingleCellExperiment SummarizedExperiment]; }; - dittoSeq = derive2 { name="dittoSeq"; version="1.6.0"; sha256="1rn92msi1py9fvvsspdzpik86a97jy0v8k2z4bnnzsvq9kijq1y1"; depends=[colorspace cowplot ggplot2 ggrepel ggridges gridExtra pheatmap reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - divergence = derive2 { name="divergence"; version="1.10.0"; sha256="11hn5j4frsd23fyvn3i0qp2n4nzlv0vjmlj0npmg9nf0xb5cpwrc"; depends=[SummarizedExperiment]; }; - dks = derive2 { name="dks"; version="1.40.0"; sha256="0vny28hbrxfh1rblkz6w02knx8sr6yv2hsdxj0idw02aamxxi3m8"; depends=[cubature]; }; - dmrseq = derive2 { name="dmrseq"; version="1.14.0"; sha256="1d6y6rbvcgprmzqkdzxg5csf0yv845d9vw10pcd1pzyndrama1vd"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; - doppelgangR = derive2 { name="doppelgangR"; version="1.22.0"; sha256="18n6gap62xwphwg8yldvh3k5xz56917w007k804610dpd8gl7ijm"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; - doseR = derive2 { name="doseR"; version="1.10.0"; sha256="0lwvmsirvpkli543q9k02hf2ra7hny7rljkmn0jiwd47j642fqhr"; depends=[digest edgeR lme4 matrixStats mclust RUnit S4Vectors SummarizedExperiment]; }; - dpeak = derive2 { name="dpeak"; version="1.6.0"; sha256="12a1zz8zj0kp2iprnckij98illb9jf2lg4nz144wjlfwiv3mq0y6"; depends=[BSgenome IRanges MASS Rcpp]; }; - drawProteins = derive2 { name="drawProteins"; version="1.14.0"; sha256="1imsisl2bwzf3dzhslmlqm6zwzil8a2l8kk7fkkc0dqka63kcwai"; depends=[dplyr ggplot2 httr readr tidyr]; }; - drugTargetInteractions = derive2 { name="drugTargetInteractions"; version="1.2.0"; sha256="1jcmkh1rjhk862f6kzqfw9zkk795yiwxq57bxbsqf9kwyykgwq7y"; depends=[AnnotationFilter BiocFileCache biomaRt dplyr ensembldb rappdirs RSQLite S4Vectors UniProt_ws]; }; - dupRadar = derive2 { name="dupRadar"; version="1.24.0"; sha256="06s3661vlsy4n9p59wb8f9gmmwd2kwz0z2ydq2diix0hajz8h5fi"; depends=[Rsubread]; }; - dyebias = derive2 { name="dyebias"; version="1.54.0"; sha256="0iha3n4p01gphsp5jn5ypm9b8mfn2dlz1sdz179i5cmycwgg6p7s"; depends=[Biobase marray]; }; - easier = derive2 { name="easier"; version="1.0.0"; sha256="1wlpmx9ghbz9ikmw70b0lhsvkbcry5rmrkq8kxm0439wwwfd0ayj"; depends=[arules BiocParallel coin DESeq2 dorothea dplyr easierData ggplot2 ggrepel matrixStats progeny quantiseqr reshape2 rlang ROCR rstatix]; }; - easyRNASeq = derive2 { name="easyRNASeq"; version="2.30.0"; sha256="01i0698nvwr4qpbi5fff89lrw5wr3xkaa478wnxj81k86sfcr59k"; depends=[Biobase BiocFileCache BiocGenerics BiocParallel biomaRt Biostrings edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD rappdirs Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; - easyreporting = derive2 { name="easyreporting"; version="1.6.0"; sha256="1ds7s0jb8xwfg7469k9n1v6fpx7mvln91a2fih8s70kgiz5kal6d"; depends=[rlang rmarkdown shiny]; }; - ecolitk = derive2 { name="ecolitk"; version="1.66.0"; sha256="0381xd6d6lkv9b0svsmxw1x32xygnj43al8dak1sqfyy74d8xdn1"; depends=[Biobase]; }; - edge = derive2 { name="edge"; version="2.26.0"; sha256="00cjg9nf4aqdw3p2wp16jyi9n0q3vh7fyyx1lpa5vx4qwlj96y2i"; depends=[Biobase jackstraw MASS qvalue snm sva]; }; - edgeR = derive2 { name="edgeR"; version="3.36.0"; sha256="1d18kdfi9vjhhw5kwfy5airrd3c16fh4wbwppbhwgawm038mwavk"; depends=[limma locfit Rcpp]; }; - eegc = derive2 { name="eegc"; version="1.20.0"; sha256="0x35z9nwylb3jq56w31z9zb2q6b52fqk0sb70l3axqamb8yym0lc"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; - eiR = derive2 { name="eiR"; version="1.34.0"; sha256="1dppl1x5s0apz7djdi3qzdv8i0q7iqh6q9dcxx1g0hfn2v945jfn"; depends=[BiocGenerics ChemmineR DBI digest RcppAnnoy RCurl RUnit snow snowfall]; }; - eisaR = derive2 { name="eisaR"; version="1.6.0"; sha256="1gfcmxdbzpb8rfdk7c1y7jhqanipa6jyxy2cg6f9jsp9x73fs61w"; depends=[BiocGenerics edgeR GenomicRanges IRanges limma S4Vectors SummarizedExperiment]; }; - enhancerHomologSearch = derive2 { name="enhancerHomologSearch"; version="1.0.1"; sha256="080cfazmj13mcymfrcajfmwrj6jq0nkhf4qqv12nb3vchd8dbvjk"; depends=[BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges httr IRanges jsonlite Matrix motifmatchr Rcpp rtracklayer S4Vectors]; }; - enrichTF = derive2 { name="enrichTF"; version="1.10.0"; sha256="0ssjsl5vh0wdq0584yl6c61d8bp5n3qvkgfrqdlpjfwb7b7gh4xv"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; }; - enrichplot = derive2 { name="enrichplot"; version="1.14.2"; sha256="1rjiqmc32c9gxckgrgbypxpp0m8y0kahvhzvjzymda25xp8zqjs2"; depends=[aplot DOSE ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 scatterpie shadowtext yulab_utils]; }; - ensemblVEP = derive2 { name="ensemblVEP"; version="1.36.1"; sha256="1g38psw45g4yvwilj47ka8xbbmjmna2rdabjfjjal47x9p0yf01a"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; - ensembldb = derive2 { name="ensembldb"; version="2.18.4"; sha256="1nsdcsghhh3ikv0hbn1aazdam7a6pqf1p6rz68ll2h6965kl4qzp"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; - epiNEM = derive2 { name="epiNEM"; version="1.18.0"; sha256="0xs9jzy0d9iv45d5ina7ki79wix96318yp17mxhp1l4vdkpm3fk7"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; }; - epialleleR = derive2 { name="epialleleR"; version="1.2.0"; sha256="1zgwwzrg9ngsfq186qsmvgwxcz0b9avr8wk1yadjlrjc9avgh2d3"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib stringi SummarizedExperiment VariantAnnotation zlibbioc]; }; - epidecodeR = derive2 { name="epidecodeR"; version="1.2.0"; sha256="1fy3i7djpj2inlcpa2h4n5hzp0q6a555sc5axg1jwxiala9l8siv"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; }; - epigenomix = derive2 { name="epigenomix"; version="1.34.0"; sha256="0yyxm97cqyy9r6bxsw40dl8nh2f1lxw41w3i3av8lixp72wxy3ml"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; - epigraHMM = derive2 { name="epigraHMM"; version="1.2.2"; sha256="0cymyvhcv9msrkbh0sp3wr02924arrls3id9563givkrzl48gab3"; depends=[bamsignals csaw data_table GenomeInfoDb GenomicRanges ggplot2 ggpubr GreyListChIP IRanges limma magrittr MASS Matrix pheatmap Rcpp RcppArmadillo rhdf5 Rhdf5lib Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; - epihet = derive2 { name="epihet"; version="1.10.0"; sha256="086x87yzjmg0l95kd0mdxysqgdj7bmc4mr95h6mkyv70nsdfyfs4"; depends=[data_table doParallel EntropyExplorer foreach GenomicRanges ggplot2 igraph IRanges pheatmap qvalue ReactomePA Rtsne S4Vectors WGCNA]; }; - epistack = derive2 { name="epistack"; version="1.0.0"; sha256="0g5v30v7afx5wppg1fxpqba0inn6k25ljy7x3fim6vcwdhdnl95n"; depends=[BiocGenerics GenomicRanges IRanges plotrix S4Vectors viridisLite]; }; - epivizr = derive2 { name="epivizr"; version="2.24.0"; sha256="1xxs34580gm2l222qf9m63id8282n2vg41s8ng6mrrd239pxpv2f"; depends=[bumphunter epivizrData epivizrServer GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - epivizrChart = derive2 { name="epivizrChart"; version="1.16.0"; sha256="1w3pxwwgl28v62sc7vrq1nqkj68mkj213bi3ccfxhl54b9aa8vnb"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; }; - epivizrData = derive2 { name="epivizrData"; version="1.22.0"; sha256="0zmn7fdbrnc96jrdk5wb2fnjip9x0i284w3g77lqi8jqjv9y4bm5"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; - epivizrServer = derive2 { name="epivizrServer"; version="1.22.0"; sha256="1amv6jj0k66k26hznqbff9hmf534sl8bhdiww4ny6szcmpl04jcq"; depends=[httpuv mime R6 rjson]; }; - epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.22.0"; sha256="1a20fma8iybbd4mgxx5wyhlnraxzxxmgrv40jm55a59g1q8rbqa9"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; - erccdashboard = derive2 { name="erccdashboard"; version="1.28.0"; sha256="1hjn52mn07jz03xisbpnyxacg51i53p9ay485q6zfp77xbdkgvln"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; - erma = derive2 { name="erma"; version="1.10.0"; sha256="0pb9ar1wy613vg6sfdmn8n4cfv1328m8bagnigsjdb3hc3hbir4z"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; - esATAC = derive2 { name="esATAC"; version="1.16.0"; sha256="1gck90pdhcc8y012rl3kcysl7pm6y7xx0xc8nnrfhw629rkg6c6f"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot digest GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2018 knitr magrittr motifmatchr pipeFrame R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; - escape = derive2 { name="escape"; version="1.4.0"; sha256="04iwvr9m62vzv80k40cvicji5x7ahj9lx28iz42kqwz8cqxv28l2"; depends=[BiocParallel dplyr ggplot2 ggridges GSEABase GSVA limma Matrix msigdbr SingleCellExperiment]; }; - esetVis = derive2 { name="esetVis"; version="1.20.0"; sha256="1052xznc94g35j8pxix53adzrd49965j8fyx149as7acqqh022dy"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; - eudysbiome = derive2 { name="eudysbiome"; version="1.24.0"; sha256="16fb0ajqm4mys0l65fwnjcpbpwiaz13zgqa4qhs2dch9d0gi4bap"; depends=[Biostrings plyr R_utils Rsamtools]; }; - evaluomeR = derive2 { name="evaluomeR"; version="1.10.0"; sha256="13vv3va8jn8pwwc05ikxwld57n2m1xy4y38ngpp2ghwlmqcl966l"; depends=[class cluster corrplot flexmix fpc ggdendro ggplot2 kableExtra MASS matrixStats mclust MultiAssayExperiment plotrix prabclus randomForest Rdpack reshape2 SummarizedExperiment]; }; - exomeCopy = derive2 { name="exomeCopy"; version="1.40.0"; sha256="1gxcqz0pmbccicqq72fcbjw11q57v1wxhi4hdhm2akh6w4j67r4c"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; - exomePeak2 = derive2 { name="exomePeak2"; version="1.6.1"; sha256="1b13kjkj7yd89v56vvjav65q0r1ivjlkz4rv5b5zqb6hdc3r4f87"; depends=[apeglm Biobase BiocGenerics BiocParallel Biostrings BSgenome cqn DESeq2 genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges mclust reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - fCCAC = derive2 { name="fCCAC"; version="1.20.0"; sha256="0dvkkqgl89cikpkgj659pkig9fq9bb41jx4za8wy0a7ikkhm2q9f"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; - fCI = derive2 { name="fCI"; version="1.24.0"; sha256="16mxqwia3an84xzjhx4gdgmr55k0j5msa0bf9pvi6z5yvy1xmaqv"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; - fabia = derive2 { name="fabia"; version="2.40.0"; sha256="1dj7kxlajgwaiqfv41vl3zyif9lfa7341rki7rbdnadl1ir3dj11"; depends=[Biobase]; }; - factDesign = derive2 { name="factDesign"; version="1.70.0"; sha256="0dhbzpmhf8lrdxnlq229rbnqrzkd2p0hmj1yhbfv0k5gbg5xbswv"; depends=[Biobase]; }; - famat = derive2 { name="famat"; version="1.4.0"; sha256="1wpbczp3bl9vzcmfv9p15qlya6c27ybayqq3kdnhpvs41imxmwd7"; depends=[clusterProfiler dplyr DT GO_db gprofiler2 KEGGREST magrittr MPINet ontologyIndex org_Hs_eg_db plotly reactome_db rWikiPathways shiny shinyBS shinydashboard stringr tidyr]; }; - farms = derive2 { name="farms"; version="1.46.0"; sha256="1m28q80i1fm0nai9avsxv73gkbhynjb6yymk7z837aiyxq0488w4"; depends=[affy Biobase MASS]; }; - fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.30.0"; sha256="1fzbjya0gwxy6xdl2vzy8by1y238mdbs99mhmbyqbhvlixc89267"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; }; - fastseg = derive2 { name="fastseg"; version="1.40.0"; sha256="1ds0hhc41nhfj3lmvld8nk2p547wd80b3yq7fjlf3dl3wfaxzy80"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; - fcScan = derive2 { name="fcScan"; version="1.8.0"; sha256="0b161ayq4m9xxfs0lgw632lgygzabz8gjl0n75050pa7qaazknvd"; depends=[doParallel foreach GenomicRanges IRanges plyr rtracklayer SummarizedExperiment VariantAnnotation]; }; - fcoex = derive2 { name="fcoex"; version="1.8.0"; sha256="0kxzzyfyrdvw1prj8l3hg96y7k6d64gg34ibp6iq3kfwl4qy9qvn"; depends=[clusterProfiler data_table dplyr FCBF ggplot2 ggrepel igraph intergraph Matrix network pathwayPCA progress scales SingleCellExperiment sna stringr]; }; - fdrame = derive2 { name="fdrame"; version="1.66.0"; sha256="0a5x51yrimv0phvx29s1x4dy1hivnnnm2jrbydl2ib552s407fwy"; depends=[]; }; - fedup = derive2 { name="fedup"; version="1.2.0"; sha256="0ixhq343x9jkwd10wwfbvvb0l58bd1mhilh1qlw3cyf7386g5f9k"; depends=[data_table dplyr forcats ggplot2 ggthemes openxlsx RColorBrewer RCy3 tibble]; }; - ffpe = derive2 { name="ffpe"; version="1.38.0"; sha256="0l6g0k2fg3xxncqx33xfckv8wmkbvpf5qqixi3zm36qmpm9xqagb"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; - fgga = derive2 { name="fgga"; version="1.2.0"; sha256="0hrvgim9xdqymar3qswwybmmv8qmr5glqssckz3lbd04mnf07icq"; depends=[BiocFileCache curl e1071 graph gRbase jsonlite RBGL]; }; - fgsea = derive2 { name="fgsea"; version="1.20.0"; sha256="10flcdm4b1kxnsvhl4k6mwkzb1vbai33k291j8nsrhj2cl5l8gm9"; depends=[BH BiocParallel data_table fastmatch ggplot2 gridExtra Matrix Rcpp]; }; - fishpond = derive2 { name="fishpond"; version="2.0.1"; sha256="057sa54c7p6vjza81xzvfr4s15yzylg6770l1sq0ncjsczfq87sz"; depends=[abind gtools jsonlite Matrix matrixStats qvalue Rcpp S4Vectors SingleCellExperiment SummarizedExperiment svMisc]; }; - flagme = derive2 { name="flagme"; version="1.50.0"; sha256="187l1akzqawp6bqlshhixna0672y5pabcaaqk875a5llvbncixhq"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; - flowAI = derive2 { name="flowAI"; version="1.24.0"; sha256="12h4vbd3799i1g10jmf10lm1p0if4psx5ypzy64j4rndydhy449j"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; - flowBeads = derive2 { name="flowBeads"; version="1.32.0"; sha256="0834n338bsbjqpsy6g3idvvwx7bmmg7cd08hmna1vsnk4hl8fqim"; depends=[Biobase flowCore knitr rrcov xtable]; }; - flowBin = derive2 { name="flowBin"; version="1.30.0"; sha256="0vywz8pcfvfq4xdrx69ivb105181lxdvapdw43f4x7wqp1pf354z"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; - flowCHIC = derive2 { name="flowCHIC"; version="1.28.0"; sha256="1nh1dy0fg53mzi81gy2kaac1scjllc75w1hms0v3s9bgvrvc00aw"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; - flowCL = derive2 { name="flowCL"; version="1.32.0"; sha256="0rx3dhxhfq98xpjwsl4r0x1sympicdpvrifbsa380n0dkp85zp27"; depends=[graph Rgraphviz SPARQL]; }; - flowClean = derive2 { name="flowClean"; version="1.32.0"; sha256="1pxc07557667n00dygxcm3r8xki85r63ys06gqwqbsd4x26v1zj7"; depends=[bit changepoint flowCore sfsmisc]; }; - flowClust = derive2 { name="flowClust"; version="3.32.0"; sha256="0ch7mkq40qcnxwgzy51vjdlwyzx4bvp03vpdm6dwjc6qy8a6qfzi"; depends=[Biobase BiocGenerics clue corpcor ellipse flowCore flowViz graph mnormt]; }; - flowCore = derive2 { name="flowCore"; version="2.6.0"; sha256="0zbd2hrdbb6r0np6nd3ab8nlcf9l57vcwnnhbqkbas8y0c2i2mwp"; depends=[BH Biobase BiocGenerics cytolib matrixStats Rcpp RcppArmadillo RProtoBufLib S4Vectors]; }; - flowCut = derive2 { name="flowCut"; version="1.4.0"; sha256="19ri0as63i17qhl9lmn8pzlfzyc9rjv9zvlf1blbfvxrmry79chd"; depends=[Cairo e1071 flowCore flowDensity]; }; - flowCyBar = derive2 { name="flowCyBar"; version="1.30.0"; sha256="038bqv4pp69ipmk3a8n1r2444r24d1h8mdyzdigmhg7pkxx0aggp"; depends=[gplots vegan]; }; - flowDensity = derive2 { name="flowDensity"; version="1.28.0"; sha256="105klbdliakyypggnkgymf8hs08cirlhmlgccmhcwbiv9gndsc3p"; depends=[car flowCore flowViz flowWorkspace gplots RFOC rgeos sp]; }; - flowFP = derive2 { name="flowFP"; version="1.52.0"; sha256="156p4b0m4rin891zfp6959s0sjyv9rmmxb7fjw7q6hlyzm2xpqgx"; depends=[Biobase BiocGenerics flowCore flowViz]; }; - flowGraph = derive2 { name="flowGraph"; version="1.2.0"; sha256="1zyf7yslx5q6qi9is7jhn8qp0s3418z2jf9axrjj1y1fsz2v0ab4"; depends=[data_table effsize furrr future ggiraph ggplot2 ggrepel gridExtra htmlwidgets igraph Matrix matrixStats purrr Rdpack stringi stringr visNetwork]; }; - flowMap = derive2 { name="flowMap"; version="1.32.0"; sha256="0jvjpr2r0gb5yyg7xjp112iypsrgqim0ifwr6p46m3jshha8r6bp"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; - flowMatch = derive2 { name="flowMatch"; version="1.30.0"; sha256="020mh29l53zihi6h24sa6m7z447g8bgfw5s1fsm6j7yq0hnkxbx4"; depends=[Biobase flowCore Rcpp]; }; - flowMeans = derive2 { name="flowMeans"; version="1.54.0"; sha256="0iy8hvi0inj1ylhdx6q4mya9k55iazprz6fdrnq1mxb2iyndzsl6"; depends=[Biobase feature flowCore rrcov]; }; - flowMerge = derive2 { name="flowMerge"; version="2.42.0"; sha256="1bi1iqmyz2d0w9yy3nxl0wfa74hfk0ffp2yxh6ya6nx4rfz5jbba"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; - flowPeaks = derive2 { name="flowPeaks"; version="1.40.0"; sha256="14wb1cvnz3v4vmi2c4pki8wm602zbjdvf3c7qkkwhr389p3hqmsi"; depends=[]; }; - flowPloidy = derive2 { name="flowPloidy"; version="1.20.0"; sha256="0g8aym8grvhvrgxl7453x9bbdc09ag7hw9mg41jxrzzvwzvrdy8r"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; - flowPlots = derive2 { name="flowPlots"; version="1.42.0"; sha256="01r6c0hwg34ym0gziirrbk96mapn9pkxhshn0gwb1rqw3jw56cfm"; depends=[]; }; - flowSpecs = derive2 { name="flowSpecs"; version="1.8.0"; sha256="018y54w3dg8myywcda41lk07mbd5y99q07i9az0f938a5mb44vd8"; depends=[Biobase BiocGenerics BiocParallel flowCore ggplot2 reshape2 zoo]; }; - flowStats = derive2 { name="flowStats"; version="4.6.0"; sha256="0jjfq66m4lbpkynwxaparkd05znhp3jl9ccj37gyghly294x3rm9"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS ncdfFlow RColorBrewer rrcov]; }; - flowTime = derive2 { name="flowTime"; version="1.18.0"; sha256="1kvy9gpyrc32041y6ngx6kqy3qikc5d48qrsmifm2xw9nxizk4m1"; depends=[dplyr flowCore magrittr plyr rlang tibble]; }; - flowTrans = derive2 { name="flowTrans"; version="1.46.0"; sha256="1fkpma9a2097qay6mkswb7sb8jshvjmjldppz67l840d7mhkkpab"; depends=[flowClust flowCore flowViz]; }; - flowUtils = derive2 { name="flowUtils"; version="1.58.0"; sha256="0rgybkzbn8c3kpbz0ddghp1np0gka0cgiqvkk5jbnhlgf4s07161"; depends=[Biobase corpcor flowCore graph RUnit XML]; }; - flowVS = derive2 { name="flowVS"; version="1.26.0"; sha256="02vikjzbi5r426l6085rfdqqvy8n8yaq7fwli18q385nb81vah7i"; depends=[flowCore flowStats flowViz]; }; - flowViz = derive2 { name="flowViz"; version="1.58.0"; sha256="039sh7qn25gp2b34khs8dyrdpxyapsjlprrvxlz8f7dl8gmggl04"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; - flowWorkspace = derive2 { name="flowWorkspace"; version="4.6.0"; sha256="11ni7kgk9s1fz3lvg85s6r7x2fhk4m7cdpilji05ya12jsyr3fig"; depends=[aws_s3 aws_signature BH Biobase BiocGenerics cytolib data_table DelayedArray digest dplyr flowCore ggplot2 graph lattice latticeExtra matrixStats ncdfFlow RBGL Rcpp RcppArmadillo RcppParallel Rgraphviz Rhdf5lib RProtoBufLib S4Vectors scales XML]; }; - flowcatchR = derive2 { name="flowcatchR"; version="1.28.0"; sha256="1qrlswb3drwpglry4d79gc41g40wz5clwlvx1kzxrd4k0j9h6mv4"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; - fmcsR = derive2 { name="fmcsR"; version="1.36.0"; sha256="0mshslfj7jsix1yc03s54spbbi56zspic49kfsjfv8npikj1i5w0"; depends=[BiocGenerics ChemmineR RUnit]; }; - fmrs = derive2 { name="fmrs"; version="1.4.0"; sha256="16f60b1ch5d0n9h29d8yzvfi7cr02pjgj8k92cw4cjsrvi8kdgwn"; depends=[survival]; }; - fobitools = derive2 { name="fobitools"; version="1.2.0"; sha256="0n0accmkh1nvlinniggy25a1b799119zc805p89cn0zs9cfm4s8r"; depends=[clisymbols crayon dplyr fgsea ggplot2 ggraph magrittr ontologyIndex purrr RecordLinkage stringr textclean tictoc tidygraph tidyr vroom]; }; - frenchFISH = derive2 { name="frenchFISH"; version="1.6.0"; sha256="1mnihakvwh38ww64fklj16bvcw22q8x3b84kia0pf9ccznhk6vs3"; depends=[MCMCpack NHPoisson]; }; - frma = derive2 { name="frma"; version="1.46.0"; sha256="05jzjld2kbdbkz3l0xzd6898d6r9b0pbl96vm27w651zcg7mhrvv"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; - frmaTools = derive2 { name="frmaTools"; version="1.46.0"; sha256="181kkqsqxbzr3fpbrcyxzawv6g0gci51k7pg6wd7nlxhxdvsl667"; depends=[affy Biobase DBI preprocessCore]; }; - funtooNorm = derive2 { name="funtooNorm"; version="1.18.0"; sha256="1qbbivg2kiwvamdslfxdn3h0cdzz5gg2418ybymzyamhipc3457r"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; - gCrisprTools = derive2 { name="gCrisprTools"; version="2.0.0"; sha256="1aqcz6m4hj8b7a8wbnq1gj2b24p45cnj03xkcklhyf17vyfch0jh"; depends=[Biobase ComplexHeatmap ggplot2 limma rmarkdown RobustRankAggreg SummarizedExperiment]; }; - gaga = derive2 { name="gaga"; version="2.40.0"; sha256="1ax91nc57h3b7xs0skpwz15wkdp5ixcs0481yllhjk2ky1m26gbl"; depends=[Biobase coda EBarrays mgcv]; }; - gage = derive2 { name="gage"; version="2.44.0"; sha256="1spndmvl8wlz3z3wsvzi0fg9nzk81xi8c220pg2rf81j9181nkar"; depends=[AnnotationDbi GO_db graph KEGGREST]; }; - gaggle = derive2 { name="gaggle"; version="1.62.0"; sha256="0qpr7pjsi3grpd33343x3gwdmiglxhcxrvi2w864rr89dxfjg188"; depends=[graph rJava RUnit]; }; - gaia = derive2 { name="gaia"; version="2.38.0"; sha256="0kx38vy9jmrzcbclbpnssd1v44ygxkvzag9wy22bl4spm6injnwy"; depends=[]; }; - garfield = derive2 { name="garfield"; version="1.22.0"; sha256="0jngv9ncx1bwqrwmzdbb17771n7j8xd4wa04jcbxsa32ngc69fh3"; depends=[]; }; - gcapc = derive2 { name="gcapc"; version="1.18.0"; sha256="05vck8414iwqrx53l8k02l1wzhb3xg1bsx7dj4vjjndcl2xqs4lz"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; - gcatest = derive2 { name="gcatest"; version="1.24.0"; sha256="0wll4r7npi09rxrkgq3x284lkjdaakxlf7x9a86s6a517wnlficq"; depends=[lfa]; }; - gcrma = derive2 { name="gcrma"; version="2.66.0"; sha256="0h7dl4if6skbcqdjdzqyghyswhwpx7xvb54lffz4wdaxpabp3001"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; }; - gdsfmt = derive2 { name="gdsfmt"; version="1.30.0"; sha256="147i33sb65n3cl3ibmjzgfm7i4ljy640k18mzknvc18v1906j9vp"; depends=[]; }; - geNetClassifier = derive2 { name="geNetClassifier"; version="1.34.0"; sha256="1phyphdc1i55ab1a05633b0p41q8n7w0byp1plgcav2s3h8mk1km"; depends=[Biobase e1071 EBarrays minet]; }; - gemini = derive2 { name="gemini"; version="1.8.0"; sha256="1s14k1jhbd1i67wfpcmkcqy7l887acksslryhmsxivlrksz8ndd4"; depends=[dplyr ggplot2 magrittr mixtools pbmcapply scales]; }; - genArise = derive2 { name="genArise"; version="1.70.0"; sha256="18lh179nyc83s3srq7k4jqih93a6yi78kxv7n3g8afn73axwaknz"; depends=[locfit tkrplot xtable]; }; - genbankr = derive2 { name="genbankr"; version="1.22.0"; sha256="1wfcgyzj3fjv7fpjv1jv8dzyh0sgpgazrmx03cgldp9ys2110rny"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; - geneAttribution = derive2 { name="geneAttribution"; version="1.20.0"; sha256="1vyyh3yfq108l8g3qfp6vc1pkr6n26f6y870yax23m6lvds6fyrn"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; - geneClassifiers = derive2 { name="geneClassifiers"; version="1.18.0"; sha256="1bq14251cdr444bi3mf4875cr0hzm9sxiajg3kbc35602fdkh739"; depends=[Biobase BiocGenerics]; }; - geneRecommender = derive2 { name="geneRecommender"; version="1.66.0"; sha256="11mzy89y8ij3qhsknz48qdf54mz11di6m800rir7x302vxmag61b"; depends=[Biobase]; }; - geneRxCluster = derive2 { name="geneRxCluster"; version="1.30.0"; sha256="0l3v4m2bn9ff9j39k37h3xnrik022r70lkjf92npwxm5m0f03l8m"; depends=[GenomicRanges IRanges]; }; - geneXtendeR = derive2 { name="geneXtendeR"; version="1.20.0"; sha256="03vfb2si6wwn2ilqpiwacmbd3fj2lgzx71jf19sk7ypmnwld3zgc"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; - genefilter = derive2 { name="genefilter"; version="1.76.0"; sha256="05ba33m99dg414lasn36mjmkd9lvrxgpamy1qj2zvi31i9vkq6y2"; depends=[annotate AnnotationDbi Biobase BiocGenerics survival]; }; - genefu = derive2 { name="genefu"; version="2.26.0"; sha256="0l9a20fncrifrmfawsx3azaxvs2v2i41xifgk6zi6dfyj1k4h3sk"; depends=[AIMS amap biomaRt iC10 impute limma mclust survcomp]; }; - geneplast = derive2 { name="geneplast"; version="1.20.1"; sha256="00ajcyxwqpkl40bq42493r7mrcvmq3nx7a1kg080vkjyskqf40m0"; depends=[ape data_table igraph snow]; }; - geneplotter = derive2 { name="geneplotter"; version="1.72.0"; sha256="1b7ngp9l00vrymx3d3nsda546s7p4ifr90idn3x2v4ilf38rfhp8"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; - genoCN = derive2 { name="genoCN"; version="1.46.0"; sha256="159hrdlyc6gh5j3qmrq2s1xpbyd29ahlggr7ccr0wlcl1m9zjfgm"; depends=[]; }; - genomation = derive2 { name="genomation"; version="1.26.0"; sha256="0ynwsrlnp98iyz4bl2s7plin0k9iy9zix4jy4v38lcqg6n4iz00j"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer S4Vectors seqPattern]; }; - genomeIntervals = derive2 { name="genomeIntervals"; version="1.50.0"; sha256="1iac3cs8dknhzgnqf0874mfxsl0fmkvyay64g9xmbnrziqyxpr7j"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; - genomes = derive2 { name="genomes"; version="3.24.0"; sha256="11x9q8ypryl37v494bcx0nnx1qcn4d7xn6hlnlaksarlcdb18rvg"; depends=[curl readr]; }; - genomicInstability = derive2 { name="genomicInstability"; version="1.0.0"; sha256="0r147z94pmf5lz68dfjq399szysj3imnlljz5n9mb0s4ypzw6p5k"; depends=[checkmate mixtools SummarizedExperiment]; }; - genotypeeval = derive2 { name="genotypeeval"; version="1.26.0"; sha256="166g9r6cx12qkira4l10379hswnmzjrhlknh910kdcrvjrwhixid"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; - genphen = derive2 { name="genphen"; version="1.22.0"; sha256="0zyhp542qfw10blg4vjarq7hdjxd84mlqjqvgaq7wdba87xgw05i"; depends=[Biostrings doParallel e1071 foreach ranger Rcpp rPref rstan]; }; - gep2pep = derive2 { name="gep2pep"; version="1.14.0"; sha256="01sqy4wg0aqka29j3bwi14892lp56jfipxh9py6fmnmkqz523b1l"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; - gespeR = derive2 { name="gespeR"; version="1.26.0"; sha256="0fd204abvfmgl8gqqr0vnsjsihmbi4wb9q6slbnf8b0gkhpqhafq"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; - getDEE2 = derive2 { name="getDEE2"; version="1.4.0"; sha256="04dqxx2qj3lwfpiv07s9dlgxc7as59cj7qbima9v09cnyciqkib6"; depends=[htm2txt SummarizedExperiment]; }; - geva = derive2 { name="geva"; version="1.2.0"; sha256="0rx67qq52iab9qs8apb5a9j91cg9gn7z2xs56wpccd2ba72wdic8"; depends=[dbscan fastcluster matrixStats]; }; - ggbio = derive2 { name="ggbio"; version="1.42.0"; sha256="1svmjaa3gisi39sl52337drvd54havcy5pjmwrykgykz5flid2m7"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; - ggcyto = derive2 { name="ggcyto"; version="1.22.0"; sha256="17dnmsa92gc2za36c3klgd7rklqlxrhkzs5ksnrc1am6a4knc0p1"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; }; - ggmsa = derive2 { name="ggmsa"; version="1.0.0"; sha256="0w4jqmsa87ijflmyya8fnwmgha6s5ax2r9d67b0a3d7yz3d1kms8"; depends=[aplot Biostrings dplyr ggalt ggforce ggplot2 magrittr R4RNA RColorBrewer seqmagick tidyr]; }; - ggspavis = derive2 { name="ggspavis"; version="1.0.0"; sha256="0lm7z8fzvw47zq618lfyxszy42qwhjr71xsyjsygvcl604z68jx0"; depends=[ggplot2 ggside SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; - ggtree = derive2 { name="ggtree"; version="3.2.1"; sha256="0qk39gdpy4kznjhmvi25y2spcdj2r1i6mv673vx8dzf66zfs20v8"; depends=[ape aplot dplyr ggfun ggplot2 magrittr purrr rlang scales tidyr tidytree treeio yulab_utils]; }; - ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.4.2"; sha256="0c7kf0a5hr63y9w6f09z8dfd3apbhx6i6cd31fvl1wiy977pn2ly"; depends=[ggnewscale ggplot2 ggtree rlang]; }; - girafe = derive2 { name="girafe"; version="1.46.0"; sha256="1al296zsp454lap05mh58y5lmrd0bfc4vmwaq5icnna56i4bi9m9"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; - glmGamPoi = derive2 { name="glmGamPoi"; version="1.6.0"; sha256="1yffzcy910cawz2lzjqg8h1hrjvrkhz3pdif5q352kpzjklr5qjm"; depends=[beachmat BiocGenerics DelayedArray DelayedMatrixStats HDF5Array matrixStats Rcpp RcppArmadillo SummarizedExperiment]; }; - glmSparseNet = derive2 { name="glmSparseNet"; version="1.12.0"; sha256="14qyj2jgjapjjznjzhslhcfbyxm9z0p28z8qrjqkxcb5z2hw9arq"; depends=[biomaRt dplyr forcats futile_logger ggplot2 glmnet glue httr Matrix MultiAssayExperiment readr reshape2 sparsebnUtils stringr SummarizedExperiment survminer]; }; - globalSeq = derive2 { name="globalSeq"; version="1.22.0"; sha256="16l9pa6siahmfl8k6m0s2cch5jfqz4pcx4xzqi8gsqn9szy6f6jq"; depends=[]; }; - globaltest = derive2 { name="globaltest"; version="5.48.0"; sha256="0wpd1b0wcwkhixd6qkaw0j3y94d5b4aabgz2gq0r72k84jbaxb9f"; depends=[annotate AnnotationDbi Biobase survival]; }; - gmapR = derive2 { name="gmapR"; version="1.36.0"; sha256="0vyw54ijfydb9mvp0znvk850na1iw51higjm3wx69l8jny9l8w60"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - gmoviz = derive2 { name="gmoviz"; version="1.6.0"; sha256="1ipslmy35mzqdkj5nnjpzbniq9ykw78vxlf06m721x9c4ywdwwh9"; depends=[BiocGenerics Biostrings circlize colorspace ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridBase IRanges pracma Rsamtools rtracklayer S4Vectors]; }; - goProfiles = derive2 { name="goProfiles"; version="1.56.0"; sha256="0bgp5kbqgp3ckjyvd9xdghi7krnyy80vyqjs5f1kl9lji4psmzzg"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; - goSTAG = derive2 { name="goSTAG"; version="1.18.0"; sha256="168bf6cvca8ham7gy5h7xmm2l6y9l2kl83mgimw8dz08086kq2zq"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; - goTools = derive2 { name="goTools"; version="1.68.0"; sha256="02h0gci72mdxzw5bnkwkg28bnaai63cs4d19h1v6kpcwnvvc2ywg"; depends=[AnnotationDbi GO_db]; }; - goseq = derive2 { name="goseq"; version="1.46.0"; sha256="1psl9mqgx1d21kayaxvrxriw34fq30wnd57q5c1sk3p8iahg73g0"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; - gpart = derive2 { name="gpart"; version="1.12.0"; sha256="10wf7yqgybab96dfpmips7gjvzznvmjda39jlxv3bjyvibc9w5is"; depends=[AnnotationDbi biomaRt data_table GenomicRanges Homo_sapiens igraph IRanges OrganismDbi Rcpp TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - gpls = derive2 { name="gpls"; version="1.66.0"; sha256="00nkqzgv58hfdlmb70is11m90v5ajcs8x9980pb0jh715z1sb5q4"; depends=[]; }; - gprege = derive2 { name="gprege"; version="1.38.0"; sha256="0v9hfx2r17zwn043nqmmx3hx08wcrdx3d371i53a936nhnrdvlmx"; depends=[gptk]; }; - gpuMagic = derive2 { name="gpuMagic"; version="1.10.0"; sha256="01420x69bmxrh3zgzl9dsmb4hh3qbv352zsfr9kxgn8qvax43d5m"; depends=[BiocGenerics Deriv DescTools digest pryr Rcpp stringr]; }; - granulator = derive2 { name="granulator"; version="1.2.0"; sha256="02nfgzq4i0l45chcl62cpcqng5q733cbw4zf16nkf9m0v8si248i"; depends=[cowplot dplyr dtangle e1071 epiR ggplot2 ggplotify limSolve magrittr MASS nnls pheatmap purrr rlang tibble tidyr]; }; - graper = derive2 { name="graper"; version="1.10.0"; sha256="1b3sapisif2qi6i8s9lb7ll91pvp2vkdk9r7fgxq004sjjwfx1ai"; depends=[BH cowplot ggplot2 Matrix matrixStats Rcpp RcppArmadillo]; }; - graph = derive2 { name="graph"; version="1.72.0"; sha256="0x31lz3qimxmng6w99xnqazaj943d94b04nbziad4jfv7c1bc2h0"; depends=[BiocGenerics]; }; - graphite = derive2 { name="graphite"; version="1.40.0"; sha256="0wmdv4j6dinszxwpz2jddshkh1ahbhm2fxh6vhjsk4grw38i1lfr"; depends=[AnnotationDbi checkmate graph httr rappdirs]; }; - groHMM = derive2 { name="groHMM"; version="1.28.0"; sha256="1jcj29df4prknqwbydca1jb9w6njacjhwwk9jp0r5mvb88xrm60s"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; - gscreend = derive2 { name="gscreend"; version="1.8.0"; sha256="13ivc738inbrd06g84jmd6i4x8lmlc2n5z7z6rh1dym6r0hm77kr"; depends=[BiocParallel fGarch nloptr SummarizedExperiment]; }; - gsean = derive2 { name="gsean"; version="1.14.0"; sha256="1zkyn3mhq6k5wlxxvpsnp17f2aldfhqw6ach2sfii49m9iwxhpjl"; depends=[fgsea PPInfer]; }; - gtrellis = derive2 { name="gtrellis"; version="1.26.0"; sha256="0q2lyb8p1xhqqhw4q1br4r8mwq06mjws8iwbbilkngvs3brbmrzl"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; - gwascat = derive2 { name="gwascat"; version="2.26.0"; sha256="0s67jgk3gnfiyfjwhq4r5xlfnip29blis4fg75kn4qmvjv5j2pxx"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges readr S4Vectors snpStats VariantAnnotation]; }; - gwasurvivr = derive2 { name="gwasurvivr"; version="1.12.0"; sha256="1q31ydns5i8jk4p4731i57f80iwx6qm0r9fka4xd4wdxzk5kps8z"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; - h5vc = derive2 { name="h5vc"; version="2.28.0"; sha256="0i4p122cavihc29javrgg5ywqn1fkg73hp46hfj3v2qmwakihk4w"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rhtslib Rsamtools S4Vectors]; }; - hapFabia = derive2 { name="hapFabia"; version="1.36.0"; sha256="0niwlfy2ljsx1ivdxrpm0f8w75bs03xb2l43dkcm5gclwac2ys1v"; depends=[Biobase fabia]; }; - hca = derive2 { name="hca"; version="1.2.3"; sha256="1raj7z4n1hrfvb18ml3ywnxzidc4ay9ixb74gh0d8m8ps662r701"; depends=[BiocFileCache digest dplyr httr jsonlite readr tibble tidyr]; }; - heatmaps = derive2 { name="heatmaps"; version="1.18.0"; sha256="11fi0kzqx6ihvvwc852xhj34xv4aik0zyv47ad4zbhvb1mvxqv8a"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; - hiAnnotator = derive2 { name="hiAnnotator"; version="1.28.0"; sha256="1hjgn9gszr38q9syjl9qqw3lml5falp08asn01mq4h1m53akwxxv"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; - hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.30.0"; sha256="02y6gy9h841aag0v88j1g0hw0ckd4zd3agjgvzi9mcmb76zhxz8k"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl sonicLength]; }; - hierGWAS = derive2 { name="hierGWAS"; version="1.24.0"; sha256="1mxlk73p4vhnhs5yv5fbxdz3i8d425535r0zwinpi1jhshimr1mw"; depends=[fastcluster fmsb glmnet]; }; - hierinf = derive2 { name="hierinf"; version="1.12.0"; sha256="1qmpxajvclk3m7yl6h5hp4yixgf1v5whiaqh8k7z8g9kz148hi45"; depends=[fmsb glmnet]; }; - hipathia = derive2 { name="hipathia"; version="2.10.0"; sha256="1w14rgl96xssijjgzqdjjs15p33nrqg2wnvv70z5k2i7xzrjwfff"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; }; - hmdbQuery = derive2 { name="hmdbQuery"; version="1.14.2"; sha256="0q741bwana06i4l07h1ckkfkhmhxqshkq94brd1ym6kvayaqrxb5"; depends=[S4Vectors XML]; }; - hopach = derive2 { name="hopach"; version="2.54.0"; sha256="1mj8glhsxkhfbj8mlghplz1dghdr7041r48njzzprx06x94aandi"; depends=[Biobase BiocGenerics cluster]; }; - hpar = derive2 { name="hpar"; version="1.36.0"; sha256="1inajapdhjxg0vwhsdnhfq22h3fv7ad7m1lv58y5v41p59av1w76"; depends=[]; }; - hummingbird = derive2 { name="hummingbird"; version="1.4.0"; sha256="1cp3agr0nzsqgs4s253vwdbzw5fkjdkas03svy8iwlzncgd000j5"; depends=[GenomicRanges IRanges Rcpp SummarizedExperiment]; }; - hypeR = derive2 { name="hypeR"; version="1.10.0"; sha256="12rkbcb75djwd1dd4677k7cw2wxpn9p64r735lbf3pkqmmgqn22p"; depends=[dplyr ggforce ggplot2 htmltools httr igraph kableExtra magrittr msigdbr openxlsx purrr R6 reactable reshape2 rlang rmarkdown scales shiny stringr visNetwork]; }; - hyperdraw = derive2 { name="hyperdraw"; version="1.46.0"; sha256="1lkiqrk01hshms9ghsfynxwj69zr3463r3rg8rn7hkwn3bj8xyzj"; depends=[graph hypergraph Rgraphviz]; }; - hypergraph = derive2 { name="hypergraph"; version="1.66.0"; sha256="0xnyl9qh5p32ifvzkcl5g4a38zbnwykqzrp8gwz076a0ksiqqdxf"; depends=[graph]; }; - iASeq = derive2 { name="iASeq"; version="1.38.0"; sha256="198rhqv0rdi3hiw9didfd6q25a15rk6nazf8xp2rhindv2frdvi3"; depends=[]; }; - iBBiG = derive2 { name="iBBiG"; version="1.38.0"; sha256="10z3vb14xyidaz4spmsg3c9wpa3gzj8c3kwh6jvqmjxgpy7kq2d3"; depends=[ade4 biclust xtable]; }; - iBMQ = derive2 { name="iBMQ"; version="1.34.0"; sha256="1b15xiv8g8p2qy3dhg80ggppri9v7hawjz2kaj8an231vgl7j546"; depends=[Biobase ggplot2]; }; - iCARE = derive2 { name="iCARE"; version="1.22.0"; sha256="17x6kcrl2wrnj7dmvbyw3cflhv07hymyy78mj0476x0w7aiihwjw"; depends=[gtools Hmisc plotrix]; }; - iCNV = derive2 { name="iCNV"; version="1.14.0"; sha256="1hhmnlq3sliz253badrcwbkdr384pyl2jb3s0dkp585gngz143xg"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; - iCOBRA = derive2 { name="iCOBRA"; version="1.22.2"; sha256="1ln8l2cp6dqg6zv7s0qnmw5ii93v5sgp0b1nwswl52zdd8mivwxy"; depends=[dplyr DT ggplot2 limma reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; - iCheck = derive2 { name="iCheck"; version="1.24.0"; sha256="06nfnj5267j9ynhz8hkzvada1d1yk62zqynif5xm6n7m9sk9fsl5"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; - iChip = derive2 { name="iChip"; version="1.48.0"; sha256="1zlwkw2qva32v515pziif6gdik5a5hqs53f3im12fzn3wgpcxvh0"; depends=[limma]; }; - iClusterPlus = derive2 { name="iClusterPlus"; version="1.30.0"; sha256="0w6r2clk8wdnnnjmq3cspmxiq1c8vwprd66xmdrhcqzbjkpkdw2b"; depends=[]; }; - iGC = derive2 { name="iGC"; version="1.24.0"; sha256="1jsmm5ldrq4vmcg3k3gd39j2fcbyzawg0p6jwz084z1v79z71m4w"; depends=[data_table plyr]; }; - iPAC = derive2 { name="iPAC"; version="1.38.0"; sha256="1yvjm18ybwa6b1ssaf1m3vas3h8jmmd6ycqdivf7lp2mdl3if4hw"; depends=[Biostrings gdata multtest scatterplot3d]; }; - iPath = derive2 { name="iPath"; version="1.0.0"; sha256="0q82hg7xgb8axsq8hajr22b83i8gsfrsd60qxaa4rrhph0cv7vlf"; depends=[BiocParallel ggplot2 ggpubr matrixStats mclust Rcpp RcppArmadillo survival survminer]; }; - iSEE = derive2 { name="iSEE"; version="2.6.0"; sha256="13x4xiy1qy2bz6yg06gx4lqly5ql6gbkbflvck1i1xws5kdc62z3"; depends=[BiocGenerics circlize colourpicker ComplexHeatmap DT ggplot2 ggrepel igraph mgcv rintrojs S4Vectors shiny shinyAce shinydashboard shinyjs shinyWidgets SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; - iSEEu = derive2 { name="iSEEu"; version="1.6.0"; sha256="1d2ksq8343wf6acj8yznzcrv6bw1dw0fljzr8g3164zhl6zbhm5j"; depends=[colourpicker DT ggplot2 IRanges iSEE S4Vectors shiny shinyAce SingleCellExperiment SummarizedExperiment]; }; - iSeq = derive2 { name="iSeq"; version="1.46.0"; sha256="0q4aj9w3lywlrj74ik0hmmm5pczl4wlk6h1c3ds6lj2l8vr6ycmc"; depends=[]; }; - iasva = derive2 { name="iasva"; version="1.12.0"; sha256="122zgn141lpgnybqxy3ml33nbi9hm1r87kyr0nl1i3mqb0gd9dvl"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; - ibh = derive2 { name="ibh"; version="1.42.0"; sha256="1h1zqcwsmjk590gcwkzpqj0c9x2i85amg3q98a9qpirw9alr1vc8"; depends=[simpIntLists]; }; - icetea = derive2 { name="icetea"; version="1.12.0"; sha256="0iy9ki661774334d5wpibc8k8ri4d6aw4y3a15yik5fdgxg1g2z1"; depends=[BiocGenerics BiocParallel Biostrings csaw DESeq2 edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; - ideal = derive2 { name="ideal"; version="1.18.1"; sha256="0bpd2naxadn0qidzrw3aznva98fxkjpl1sx4nr7lzjdj1kkvc6pf"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rlang rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; - idiogram = derive2 { name="idiogram"; version="1.70.0"; sha256="1qpip00mjdmc5vk6ab830ma6p4i0rgz8zih452jsqcfjpgc7q4p4"; depends=[annotate Biobase plotrix]; }; - idpr = derive2 { name="idpr"; version="1.4.0"; sha256="0zakv6rmi3n5b1yd232vmm6qzlmnqkjxqd69fj5blg7lr1jyknjn"; depends=[Biostrings dplyr ggplot2 jsonlite magrittr plyr rlang]; }; - idr2d = derive2 { name="idr2d"; version="1.8.1"; sha256="1cbzyf9nwqgqvz03526v3hxgkrrpfs4m8ajw186cxa4h6kdm232x"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; }; - igvR = derive2 { name="igvR"; version="1.14.0"; sha256="0i55zx2y92cl22d4x4h4gjdaknyxidsxqz22fpgyfd5abryx5ni3"; depends=[BiocGenerics BrowserViz GenomicAlignments GenomicRanges httpuv MotifDb RColorBrewer rtracklayer seqLogo VariantAnnotation]; }; - illuminaio = derive2 { name="illuminaio"; version="0.36.0"; sha256="0icsp610am5vrd8x2h9c450phn4vl9c5wnzqmkix5hkqzrykk34m"; depends=[base64]; }; - imageHTS = derive2 { name="imageHTS"; version="1.44.1"; sha256="0m64d9csya84s2vsbmkflys03a27z8r9pa6mdd28aqaqwv0ww9dr"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; - imcRtools = derive2 { name="imcRtools"; version="1.0.2"; sha256="05xw15d0sbjnrb8ffnajzz4wd1fygn3092za9y9sz3pcmkzbmhkf"; depends=[abind BiocNeighbors BiocParallel concaveman cytomapper data_table dplyr DT EBImage ggplot2 ggraph igraph magrittr pheatmap readr RTriangle S4Vectors scuttle sf SingleCellExperiment SpatialExperiment stringr SummarizedExperiment tidygraph viridis vroom]; }; - immunoClust = derive2 { name="immunoClust"; version="1.26.0"; sha256="0vqn8455spray252b6kg771mwz4b6f51d4k7srg2i3rn7kyp7r38"; depends=[flowCore lattice]; }; - immunotation = derive2 { name="immunotation"; version="1.2.0"; sha256="1rdmy46grqjf8ydgq0pgaja3jv4jna0yffw7fmiirfh96m2qvb00"; depends=[curl ggplot2 maps ontologyIndex readr rlang rvest stringr tidyr xml2]; }; - impute = derive2 { name="impute"; version="1.68.0"; sha256="0k6dil8ljgp5qr87m7hxli4igb36fbxiwczaqc5pi8mlfh70fqj5"; depends=[]; }; - infercnv = derive2 { name="infercnv"; version="1.10.1"; sha256="1hmkziaz8w4dlcf4zqpd80rxzb5394hqy8y1sgjidk18x42m88v0"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov leiden Matrix phyclust RANN RColorBrewer reshape rjags SingleCellExperiment SummarizedExperiment tidyr]; }; - infinityFlow = derive2 { name="infinityFlow"; version="1.4.0"; sha256="1bqkw5z6sxmj10wxzqaszjl5fw4rvfkr9j0w7qvprqyc3335z6a9"; depends=[Biobase flowCore generics gtools matlab pbapply png raster uwot xgboost]; }; - intansv = derive2 { name="intansv"; version="1.34.0"; sha256="1y4s2vpaw0kmzz5qn52yq2dzzivdi5scmxh3w7garbispc6m0v1g"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; - interacCircos = derive2 { name="interacCircos"; version="1.4.0"; sha256="1jn3373sj9l5ypc21niv81rfwa2hfmp1g28ab9xx8hdv18rsl8d6"; depends=[htmlwidgets plyr RColorBrewer]; }; - interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.32.0"; sha256="06jwcl34x6abg3s71w8y1jla6l0wd2jp72wb46kqbw6ry0wqj1yy"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; - interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.32.0"; sha256="1pi887192k1jifb4k3pf2jn5hcl1xmmy6vwl22r9njsprdyb3kab"; depends=[BiocGenerics DT shiny]; }; - inveRsion = derive2 { name="inveRsion"; version="1.42.0"; sha256="0205fmv174x23gl5ka8k5j2x1lrwqc31zx7p0ngr9877kbi5idrj"; depends=[haplo_stats]; }; - ipdDb = derive2 { name="ipdDb"; version="1.12.0"; sha256="0q4lrhj3l5ayfx1bba9176r2wybpn710yxxrcprgr87h95wqac8v"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; - isobar = derive2 { name="isobar"; version="1.40.0"; sha256="0njl7b0k5hnwlj060ry6a8zjw035c21d107n0j2fyxg8nx4icqsx"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; - isomiRs = derive2 { name="isomiRs"; version="1.22.1"; sha256="1jzk47dxwk396adc7mzi9pil1dzbs0vjsibgclgs8lggm37dxq93"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics broom cluster cowplot DEGreport DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; - iterClust = derive2 { name="iterClust"; version="1.16.0"; sha256="0ggr9h3kyyjnfiqwk4w22icg8fg5bln1vygk1ip0badcxk2b6gyw"; depends=[Biobase cluster]; }; - iterativeBMA = derive2 { name="iterativeBMA"; version="1.52.0"; sha256="1s86cq9c5a330cpxjpxgj1ibphmfsrxp1dn2gp7n50qkp2pyjsqa"; depends=[Biobase BMA leaps]; }; - iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.52.0"; sha256="0jrjyrg2kfmgiybwdglrbfvfziy8i6jnkzb2ddr8z0670bmv8wxw"; depends=[BMA leaps survival]; }; - iteremoval = derive2 { name="iteremoval"; version="1.14.0"; sha256="15ls501y27lc9iyvz9fmk8w09512bg7cxl763amck1f6r3qnm8hl"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; }; - ivygapSE = derive2 { name="ivygapSE"; version="1.16.0"; sha256="1a35z2ndvdqj84g5327cpz3s6aqn953ycwgglcqxpaabf2jh18sq"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; - karyoploteR = derive2 { name="karyoploteR"; version="1.20.3"; sha256="0bcc1ln7602lrbm9wckgyfd9slsqiljjmymj28rfpax1n8rbq44m"; depends=[AnnotationDbi bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; - kebabs = derive2 { name="kebabs"; version="1.28.1"; sha256="19i62ga793vza60bzq0hpr5y85vrrcsmjckyyasjzfipn3nwf98f"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; - keggorthology = derive2 { name="keggorthology"; version="2.46.0"; sha256="1rckw5yg9swf86cmh4nmrzb37w8m023c7q0pis1nqbcx9lgdgiw5"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; - kissDE = derive2 { name="kissDE"; version="1.14.0"; sha256="1k6aljlhj3k06a95imnna1jmx1xwvnbc72sbp2jqn2hc69pkyi2j"; depends=[aod Biobase DESeq2 doParallel DSS foreach ggplot2 gplots matrixStats]; }; - lapmix = derive2 { name="lapmix"; version="1.60.0"; sha256="17niykbr8c388qbvjix2hc3zmpa5335bhmwsvnna4qa9v9fi9ln2"; depends=[Biobase]; }; - ldblock = derive2 { name="ldblock"; version="1.24.0"; sha256="1v9b372d5hpwwik6956mfwc9b3bibygz042i4nydsklnbwm5vcmg"; depends=[BiocGenerics EnsDb_Hsapiens_v75 ensembldb GenomeInfoDb GenomicFiles httr Matrix Rsamtools snpStats VariantAnnotation]; }; - lefser = derive2 { name="lefser"; version="1.4.0"; sha256="0hf1il7h8dsqhdjxz88alyn4b5r95189gxs88ca9w1dcg7nx8xfv"; depends=[coin ggplot2 MASS SummarizedExperiment]; }; - les = derive2 { name="les"; version="1.44.0"; sha256="08kahiq7j7xwr9hpynzcnbr3jchdd83iacywrnb03plz5jx22q9n"; depends=[boot fdrtool gplots RColorBrewer]; }; - levi = derive2 { name="levi"; version="1.12.0"; sha256="0mn8hcbld16qcdmb35hamg9p1rs7264k25s1bhw2ipcipkjv6fh3"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 rmarkdown shiny shinydashboard shinyjs testthat xml2]; }; - lfa = derive2 { name="lfa"; version="1.24.0"; sha256="02b90xjb2lfm86hbsdrvzpv20pijnq78ibz4dwjzqd9v4xhia3wr"; depends=[corpcor]; }; - limma = derive2 { name="limma"; version="3.50.1"; sha256="0plffhwh73k6rkcpyhhzvfgni1kgxg9zmqaf08l8ir6x04fgw8kz"; depends=[]; }; - limmaGUI = derive2 { name="limmaGUI"; version="1.70.0"; sha256="0g4bp8ih848kh907ykmn6q1nzwabg5ifqb7123m87wdhrw224xjp"; depends=[limma R2HTML tkrplot xtable]; }; - lionessR = derive2 { name="lionessR"; version="1.8.0"; sha256="0n4ky9g2a4n5wisvkj9afkvaqdq4yxfabnx26vrjy8g34dg5dz3l"; depends=[S4Vectors SummarizedExperiment]; }; - lipidr = derive2 { name="lipidr"; version="2.8.1"; sha256="0a007pbn438ba8zykf99x4lhb5yni5ycsd1wcacj8vmx34g1k0zd"; depends=[data_table dplyr fgsea forcats ggplot2 imputeLCMD limma magrittr rlang ropls S4Vectors SummarizedExperiment tidyr]; }; - lisaClust = derive2 { name="lisaClust"; version="1.2.0"; sha256="0n3vwawlmybjbgvgb66pc0if63dn7mqhk74jpskqzv7c6f5nbvdv"; depends=[BiocGenerics BiocParallel class concaveman data_table dplyr ggplot2 purrr S4Vectors spatstat_core spatstat_geom spicyR tidyr]; }; - lmdme = derive2 { name="lmdme"; version="1.36.0"; sha256="0wi1lsaix6dgmj69kpm8rg5jbhv2a7r7a4n6zz1zg0q288pzs34s"; depends=[limma pls stemHypoxia]; }; - loci2path = derive2 { name="loci2path"; version="1.14.0"; sha256="18wzbsa22ix5q6icr2mmcfijrlv4dg222icyixlpzrcbhc8r42sq"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; - logicFS = derive2 { name="logicFS"; version="2.14.0"; sha256="1zcpili2syp0xhggy6pq6xa3w964jird0h3wb7i0r3427wd76mzj"; depends=[LogicReg mcbiopi survival]; }; - logitT = derive2 { name="logitT"; version="1.52.0"; sha256="0al9spb7i5g86x0ciap0y9n2i2hj33s9b6201wp0qq869aqz8g28"; depends=[affy]; }; - lpNet = derive2 { name="lpNet"; version="2.26.0"; sha256="0j1il1li6q82zy2f2mqprhr8pmk1xcs06jy55ddpvmxz8146s3sb"; depends=[lpSolve]; }; - lpsymphony = derive2 { name="lpsymphony"; version="1.22.0"; sha256="1bv28b1fgcazv6j0xw4nn6wljs37qnkyahqy7anrwissdpryhjfs"; depends=[]; }; - lumi = derive2 { name="lumi"; version="2.46.0"; sha256="0v33p66vn4alhx2il9wwdvc9sqvgasgj0s2gk85gjc76ad0017in"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; - m6Aboost = derive2 { name="m6Aboost"; version="1.0.0"; sha256="1513jrvvqf1b25dl40y991h21q1ilmqhg8izji1b0q0n3r1i121p"; depends=[adabag Biostrings BSgenome dplyr ExperimentHub GenomicRanges IRanges rtracklayer S4Vectors]; }; - mAPKL = derive2 { name="mAPKL"; version="1.24.0"; sha256="0l6r333hqgbk7b907j89g5q2ixx1zgv9hq39lixbv9bgcd99m9c6"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; }; - mBPCR = derive2 { name="mBPCR"; version="1.48.0"; sha256="0i1jrlj0xjkl2giw6955xyqfmcm8vscv8znpa0v0rkw06iilqmr2"; depends=[Biobase GWASTools oligoClasses]; }; - mCSEA = derive2 { name="mCSEA"; version="1.14.0"; sha256="1k574mm9k23gqmszds9s4mg1nmsrwh3c7r6adj0746120rl6m1dr"; depends=[biomaRt fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; - maCorrPlot = derive2 { name="maCorrPlot"; version="1.64.0"; sha256="1pgn23npk65g8cc80gj5cp6k41xzqc7pnnx388vmkhxs3biy2l6v"; depends=[lattice]; }; - maPredictDSC = derive2 { name="maPredictDSC"; version="1.32.0"; sha256="1gax3v24z4xlzdnghwxfhi8xr6y6hz2d66597cpgl44z734i2252"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; - maSigPro = derive2 { name="maSigPro"; version="1.66.0"; sha256="02s2fpmkpqzr8xsqw93hgi8wrnx8klh92j1cyf5xiqqkl3581apb"; depends=[Biobase MASS mclust venn]; }; - maanova = derive2 { name="maanova"; version="1.64.0"; sha256="1bifi7fzjhc00j8ckifh8vs4l3vxmqfh5kpwd1qgcg8q25hpx7gw"; depends=[Biobase]; }; - macat = derive2 { name="macat"; version="1.68.0"; sha256="17jxgq0cblw77anx4kd3gnj1yjffid1iw2yg8kw2wvslzwyrnyn9"; depends=[annotate Biobase]; }; - made4 = derive2 { name="made4"; version="1.68.0"; sha256="0jnzxd9dk3ihbjpybb9f43iww1xsz8l85ivav9a4s8zwc8nbwn8c"; depends=[ade4 Biobase gplots RColorBrewer scatterplot3d SummarizedExperiment]; }; - maftools = derive2 { name="maftools"; version="2.10.05"; sha256="1m38j8b79xdkfaar62gpv2b31g61n6giijffmff8ryicvhkb157k"; depends=[data_table RColorBrewer Rhtslib survival zlibbioc]; }; - maigesPack = derive2 { name="maigesPack"; version="1.58.0"; sha256="19xixj4mk4vgh1rvxgnscyz6mx17nyqyhj64pixhz80mwa1w5vdd"; depends=[convert graph limma marray]; }; - makecdfenv = derive2 { name="makecdfenv"; version="1.70.0"; sha256="1v4x4x6x65sjdl194adhsz3l2lgcri9mmwix6dvcvd0pb321jpwn"; depends=[affy affyio Biobase zlibbioc]; }; - mapscape = derive2 { name="mapscape"; version="1.18.0"; sha256="0cim9svg45glfyli0liphhix2k0864fr0kl9kafv4zigbmfv83jy"; depends=[base64enc htmlwidgets jsonlite stringr]; }; - marr = derive2 { name="marr"; version="1.4.0"; sha256="00wq5s68fxp9cdc77frzk6pyim89yk3gk9786g6szx2acbaqas0j"; depends=[dplyr ggplot2 magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; - marray = derive2 { name="marray"; version="1.72.0"; sha256="1la805y8j522vpiazm1z6wpq4ibia9bib5fpiia5mxmpzmqg6gzz"; depends=[limma]; }; - martini = derive2 { name="martini"; version="1.14.0"; sha256="0ml5b38ivszn5qyqfi5c8xs43z05xiqhgybqaqxiasfl7rv18ikd"; depends=[igraph Matrix Rcpp RcppEigen snpStats]; }; - maser = derive2 { name="maser"; version="1.12.1"; sha256="1axgjckdf88nia8p6bpkxzblqydql4hbnapfspgwb4pv08409537"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; - maskBAD = derive2 { name="maskBAD"; version="1.38.0"; sha256="1fkzisfa0bazg0n41g9ixzh5xaw34wdkb56dx0ljg8n1dkq28jbn"; depends=[affy gcrma]; }; - massiR = derive2 { name="massiR"; version="1.30.0"; sha256="142lidx7j4n1sfizwwlschjc4di2cqz5v1q9p4v4i1xndpdxdwya"; depends=[Biobase cluster diptest gplots]; }; - matchBox = derive2 { name="matchBox"; version="1.36.0"; sha256="13i22m51g72jahxpxnfjr1jxbphiihy7yhwhm0ywxra9vmabpknp"; depends=[]; }; - matter = derive2 { name="matter"; version="1.20.0"; sha256="0m5rh4v7nsy8ijvz2amalihp5vzblpyhmkamy5zk66rwk17w304h"; depends=[biglm BiocGenerics BiocParallel digest irlba Matrix ProtGenerics]; }; - mbkmeans = derive2 { name="mbkmeans"; version="1.10.0"; sha256="03hpj218s8fynmk1s50s0rinhsljikxdrff06yc8ysbyc6hyfb4k"; depends=[beachmat benchmarkme BiocParallel ClusterR DelayedArray Matrix Rcpp RcppArmadillo Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment]; }; - mdp = derive2 { name="mdp"; version="1.14.0"; sha256="0q721w901pxyjygz63d7a39h762ngqk8dqhn0grad82n90bywx0m"; depends=[ggplot2 gridExtra]; }; - mdqc = derive2 { name="mdqc"; version="1.56.0"; sha256="06yvmgn8qhh1lmm338sdp50jfw7v148sn2mwmcps3l56vh4bci74"; depends=[cluster MASS]; }; - megadepth = derive2 { name="megadepth"; version="1.4.0"; sha256="0mg7n3990qv65rg624473ssccka0yjpgc20glrdc5saci891j44r"; depends=[cmdfun dplyr fs GenomicRanges magrittr readr xfun]; }; - memes = derive2 { name="memes"; version="1.2.5"; sha256="1524h2qq8ymy1vdqpja1yjn0wj07aawfiwjgc4lmclpjbkn57yhg"; depends=[Biostrings cmdfun dplyr GenomicRanges ggplot2 ggseqlogo magrittr matrixStats patchwork processx purrr readr rlang tibble tidyr universalmotif usethis xml2]; }; - meshes = derive2 { name="meshes"; version="1.20.0"; sha256="1mwdrpqj7vphb30ii958hglzr0h4z7nv99v5sqvgjql76m8z0hcg"; depends=[AnnotationDbi AnnotationHub DOSE enrichplot GOSemSim MeSHDbi yulab_utils]; }; - meshr = derive2 { name="meshr"; version="2.0.2"; sha256="030wxk7aj6d5wkfmzdji4dharmwhh9hx6rgy0igjb4lp4ih6wram"; depends=[BiocGenerics BiocStyle Category fdrtool knitr markdown MeSHDbi rmarkdown RSQLite S4Vectors]; }; - messina = derive2 { name="messina"; version="1.30.0"; sha256="1k00l4qq5jn6lkna7ch9dyycrgfs446hajwki836hm1bvdfsz2q9"; depends=[foreach ggplot2 plyr Rcpp survival]; }; - metaCCA = derive2 { name="metaCCA"; version="1.22.0"; sha256="0bdnd895x3z0p0xihhgs9jcrrm8zc3a05w7m1rif2nlr8r07aixf"; depends=[]; }; - metaMS = derive2 { name="metaMS"; version="1.30.0"; sha256="126brvip0h69g7ak1324vi2kflppccj7v0rqfgcb4pcb6f5fr01q"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; - metaSeq = derive2 { name="metaSeq"; version="1.34.0"; sha256="09js59k0kzwrl8siy5dmr1wmim3klynx1yq8m0wajd0zj2zs5yyr"; depends=[NOISeq Rcpp snow]; }; - metabCombiner = derive2 { name="metabCombiner"; version="1.4.0"; sha256="0sx39fd8z5y00gb8471vl6n9gz8kz6yx23w3ph8slycnkr31pxag"; depends=[caret dplyr matrixStats mgcv rlang S4Vectors tidyr]; }; - metabolomicsWorkbenchR = derive2 { name="metabolomicsWorkbenchR"; version="1.4.0"; sha256="01d792dcy53fbczv9c6yw2wd54r0lk1flnz93b37kccnnpfcdgi0"; depends=[data_table httr jsonlite MultiAssayExperiment struct SummarizedExperiment]; }; - metabomxtr = derive2 { name="metabomxtr"; version="1.28.0"; sha256="18672j5k2yhilsm509qvmxrnpswx0q1vgkpa418pbxhl1kz72pj0"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; - metagene = derive2 { name="metagene"; version="2.26.0"; sha256="1x6prcw2rqb179w9fb3irzijh8ng6flmza8ydnmhj992s8lq7iv7"; depends=[BiocParallel data_table EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats muStat purrr R6 Rsamtools rtracklayer stringr]; }; - metagene2 = derive2 { name="metagene2"; version="1.10.0"; sha256="0k0aysnwq08c699frbsyr8rys2djgi0crw804qvl5fl956fnpczj"; depends=[BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr purrr R6 reshape2 Rsamtools rtracklayer]; }; - metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.36.0"; sha256="0fyvy40jibaz5y4br49547h559dh4kk0vdysh9hfg1hi1q269ck9"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer Wrench]; }; - metahdep = derive2 { name="metahdep"; version="1.52.0"; sha256="1pwij0xjrrcvp3c24ia78nsk1lhgxwr16md55h9292vh0pmh4d8w"; depends=[]; }; - metapod = derive2 { name="metapod"; version="1.2.0"; sha256="1s8dfzpgbpxbn3jvx891gvw3jyn43nlxb73yv1vjn85brk9zbqpk"; depends=[Rcpp]; }; - metapone = derive2 { name="metapone"; version="1.0.0"; sha256="0mbbmjv3kwfn78ssar0g2cnajgflxx4gay9m668mryxirnnyvvsr"; depends=[BiocParallel fields markdown]; }; - metaseqR2 = derive2 { name="metaseqR2"; version="1.6.1"; sha256="1sdayf0mdvwqdmqxm62xr5g6llskhsb6s90smxsdr6pp4y7gcr8c"; depends=[ABSSeq baySeq Biobase BiocGenerics BiocParallel biomaRt Biostrings corrplot DESeq2 DSS DT EDASeq edgeR genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gplots harmonicmeanp heatmaply htmltools httr IRanges jsonlite lattice limma locfit log4r magrittr MASS Matrix NBPSeq pander qvalue rmarkdown rmdformats Rsamtools RSQLite rtracklayer S4Vectors stringr SummarizedExperiment survcomp VennDiagram vsn yaml zoo]; }; - metavizr = derive2 { name="metavizr"; version="1.18.0"; sha256="1grsk7aw1k9j9qgl033ca7azfifjhv07grpkjd57lpbasjchf9m2"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; }; - methInheritSim = derive2 { name="methInheritSim"; version="1.16.0"; sha256="0ig4a0v5j2fdc380m4c97477yhwzhi4c8h6cybam12vnl6l8mfr9"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; - methimpute = derive2 { name="methimpute"; version="1.16.0"; sha256="0dkq86962hrpn4i038bl2j8sjnh0qyfv7x81p5ldrfm55l393wyy"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; - methrix = derive2 { name="methrix"; version="1.8.0"; sha256="0k1kgz05hv5wqarp12nkwif3g8bhyb2zqyv3l78cdi1gg7smbn3j"; depends=[BSgenome data_table DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array IRanges matrixStats rtracklayer SummarizedExperiment]; }; - methylCC = derive2 { name="methylCC"; version="1.8.0"; sha256="18mk945nzj591l0cxj1qfl58ifmhka89pf08dp3lc84n5k2ymjdf"; depends=[Biobase bsseq bumphunter dplyr FlowSorted_Blood_450k genefilter GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges magrittr minfi plyranges quadprog S4Vectors]; }; - methylGSA = derive2 { name="methylGSA"; version="1.12.0"; sha256="1cwm1cn77l0gq6a53rd0zhwqp708v4cl9navirxw4pq4mba8nziq"; depends=[AnnotationDbi BiocParallel clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg shiny stringr]; }; - methylInheritance = derive2 { name="methylInheritance"; version="1.18.0"; sha256="1vz2aww1523h7lrac04sq4p521bbhw4l1cx4j20ijjddd9v5kr45"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; - methylKit = derive2 { name="methylKit"; version="1.20.0"; sha256="02px46h2ynprss7kwll3i0jz0clrdg0bys70jacd432xw34nm2sx"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust mgcv qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; - methylMnM = derive2 { name="methylMnM"; version="1.32.0"; sha256="1l87588frvl2cs9gf45axq90xhz94xx825zhm1w0gg7pjxgkwdmb"; depends=[edgeR statmod]; }; - methylSig = derive2 { name="methylSig"; version="1.6.0"; sha256="0kp1ckxbidwlbv4690g236qhbh9rzjglx8gpmkihq67hfci7537v"; depends=[bsseq DelayedArray DelayedMatrixStats DSS GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - methylclock = derive2 { name="methylclock"; version="1.0.1"; sha256="00j1crflmpk02xxs0gfidrd04s8gaw3l1hiqs7qj522j13ks1q45"; depends=[Biobase devtools dplyr dynamicTreeCut ExperimentHub ggplot2 ggpmisc ggpubr impute methylclockData minfi PerformanceAnalytics preprocessCore quadprog Rcpp RPMM tibble tidyr tidyverse]; }; - methylscaper = derive2 { name="methylscaper"; version="1.2.0"; sha256="0ygkx6fs8rjbqp4ry3am7vd3jsqx3nac1z1hdiib2pvgr7b6h1r7"; depends=[BiocParallel Biostrings data_table Rfast seqinr seriation shiny shinyFiles shinyjs SummarizedExperiment]; }; - methylumi = derive2 { name="methylumi"; version="2.40.1"; sha256="1lfcsv8k9c4ndfwlbdk3vd7fq58100bfijyxklna41zf8m8kkkka"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; - mfa = derive2 { name="mfa"; version="1.16.3"; sha256="0jpnwxzm6iyqcbi6lf89w7xi4gmgi0fhb7rln6g0s81jarqxggib"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; - mgsa = derive2 { name="mgsa"; version="1.42.0"; sha256="02yc49w9yccvhq6iwf09kfb7hkq35aswxymcrkf4j54q7mqhiflc"; depends=[gplots]; }; - miQC = derive2 { name="miQC"; version="1.2.0"; sha256="1a9f6w3j3w2wwqgl2hnl2jrrzycnzwhjv2cds2xk6lakz6x7h9hd"; depends=[flexmix ggplot2 SingleCellExperiment]; }; - miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.18.0"; sha256="07snnvgnmxj0w0f9400vcqgchbfvhmqlh3wrk4wqacqc0ldcxb7a"; depends=[]; }; - miRLAB = derive2 { name="miRLAB"; version="1.24.0"; sha256="01fhzkhr59n6ph2av52vwnyagv9dxarc1l4vz4hlsyqs5z2fna2q"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl stringr SummarizedExperiment TCGAbiolinks]; }; - miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.22.0"; sha256="1j25gslxbsvwdz2j8qyj8mc341d6sr5qamiav819lbv91h8vx7gm"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; }; - miRNApath = derive2 { name="miRNApath"; version="1.54.0"; sha256="014159iszf0m8kf1w36q8cp4bv60hlcqwzkizdnk1hbpxvalr5w6"; depends=[]; }; - miRNAtap = derive2 { name="miRNAtap"; version="1.28.0"; sha256="1d0khib40j3jyg7nksk0slhryaar9wjx7zwd408r4ndxqghgxj8w"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; - miRSM = derive2 { name="miRSM"; version="1.12.0"; sha256="1p6qg1wnill41amv8sppz51b4li8zdlh8fq577fwl6yrp63rp319"; depends=[BiBitR BicARE biclust Biobase dbscan dynamicTreeCut energy fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MatrixCorrelation MCL mclust miRspongeR NMF org_Hs_eg_db PMA ppclust Rcpp rqubic s4vd SOMbrero subspace SummarizedExperiment WGCNA]; }; - miRcomp = derive2 { name="miRcomp"; version="1.24.0"; sha256="1kknr5m62ly03p5yzam5c3hwpaky25g3y92h6z3sg7xfjgsd9qpz"; depends=[Biobase KernSmooth miRcompData]; }; - miRmine = derive2 { name="miRmine"; version="1.16.0"; sha256="0cx7181dsfclq2dplx1wcgnaqhxlgyfxsi0g4ii82yp1ka5fpml4"; depends=[SummarizedExperiment]; }; - miRspongeR = derive2 { name="miRspongeR"; version="1.20.1"; sha256="1xzi7irlgdqnnh9s4qrwv3p7l8y7k44iiqlc8hnyymxfhbymadym"; depends=[clusterProfiler corpcor DOSE igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA survival varhandle]; }; - mia = derive2 { name="mia"; version="1.2.7"; sha256="10mk41v88xjk0sanxrdsa6q41j2m5a35b2b9sp993b5xrglxdrlz"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS MultiAssayExperiment rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; - miaSim = derive2 { name="miaSim"; version="1.0.0"; sha256="0870jvqwcg08fyzb4c9qsb6sk7r4sxqzrrfzijd25sdjbqly4zzx"; depends=[deSolve poweRlaw SummarizedExperiment]; }; - miaViz = derive2 { name="miaViz"; version="1.2.1"; sha256="02fm69mfdgh8p10ajyxrl55c5f9kwql3a2xniwllv2cic0fcf1xi"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggtree mia purrr rlang S4Vectors scater SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; }; - microRNA = derive2 { name="microRNA"; version="1.52.0"; sha256="0x145alfh8qnbnhahxhfygcqc4xwiiirabl9k9nbcyadc5fawfc1"; depends=[Biostrings]; }; - microbiome = derive2 { name="microbiome"; version="1.16.0"; sha256="0j00xbw5gh53bfij8q3q2pa8lwvn3wb23vs9lybvlhjp725h064z"; depends=[dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; }; - microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.8.0"; sha256="0g3lnwr5v62lkfz5fwdpjs9lr9vb8h8grqqrvwhyin5xmgkr5lnn"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; }; - microbiomeExplorer = derive2 { name="microbiomeExplorer"; version="1.4.0"; sha256="0ghsv6yf6v3b2xqv6a5r2q0glzajmy5wa3qhsnds6v0gj62v5ycg"; depends=[Biobase biomformat broom car DESeq2 dplyr DT forcats heatmaply knitr limma lubridate magrittr matrixStats metagenomeSeq plotly purrr RColorBrewer readr reshape2 rlang rmarkdown shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr tibble tidyr vegan]; }; - microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.0.2"; sha256="1caf3cd5rl1kikyf66zjzwfk7w43ix0hh0f98r3y0mipdcp97rfw"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC purrr rlang S4Vectors tibble tidyr tidytree yaml]; }; - midasHLA = derive2 { name="midasHLA"; version="1.2.0"; sha256="1dnqx9h3qz5p6l19s0nm90a35523cn32ymgg8pri5rc3jfrilv9k"; depends=[assertthat broom dplyr formattable HardyWeinberg kableExtra knitr magrittr MultiAssayExperiment qdapTools rlang S4Vectors stringi SummarizedExperiment tibble]; }; - miloR = derive2 { name="miloR"; version="1.2.0"; sha256="1pvd8kdh6mmv10ryq038qwr07w5g0n6pnpchb653i3dixygkgd94"; depends=[BiocNeighbors BiocParallel BiocSingular cowplot dplyr edgeR ggbeeswarm ggplot2 ggraph ggrepel gtools igraph irlba limma Matrix matrixStats patchwork RColorBrewer S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; - mimager = derive2 { name="mimager"; version="1.18.0"; sha256="0xd5yxbljyxzvdr8y28qk1pl9sy44q9pxkpcfmxphsbf6bvy0d5b"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; - mina = derive2 { name="mina"; version="1.2.0"; sha256="10nlv2l9gf5vbgh9aqa97xk628rdl3kgiybskrxipsjm8jmvw5c3"; depends=[apcluster biganalytics bigmemory foreach ggplot2 Hmisc MCL parallelDist plyr Rcpp RcppArmadillo RcppParallel reshape2 RSpectra stringr]; }; - minet = derive2 { name="minet"; version="3.52.0"; sha256="0nhgvgci4r9pjfsnvxyj2q8im1wvig4zmfx2kidw8f63x2ip2rbd"; depends=[infotheo]; }; - minfi = derive2 { name="minfi"; version="1.40.0"; sha256="0d5220nknwgi1020vhvf7408n5p80dmad66n85af5776qn84a6nx"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; - mirIntegrator = derive2 { name="mirIntegrator"; version="1.24.0"; sha256="1fsab3q019a94rdb9xbdbfscyyaq9vnrfnykkmk847v75hg7sfvc"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; - mirTarRnaSeq = derive2 { name="mirTarRnaSeq"; version="1.2.0"; sha256="06fyw0hrmbcg24jdhlyz6z5pvp994zfmvw3c3icya5gammiqpx9n"; depends=[assertthat caTools corrplot data_table dplyr MASS pheatmap pscl purrr R_utils reshape2]; }; - missMethyl = derive2 { name="missMethyl"; version="1.28.0"; sha256="0hyix2h2sarfipx9jd2878nrl2ng6c03g1r7gm7grxzj007davpw"; depends=[AnnotationDbi BiasedUrn Biobase BiocGenerics GenomicRanges GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest IRanges limma methylumi minfi org_Hs_eg_db ruv S4Vectors statmod stringr SummarizedExperiment]; }; - missRows = derive2 { name="missRows"; version="1.14.0"; sha256="08xfbczrrwk0ksp8bgd8kzlj388j7kp35vg7c2hncpwxzj9gcxgm"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; - mistyR = derive2 { name="mistyR"; version="1.2.1"; sha256="1a3z8d1n0asis3fmpzsiyj13mhrsm72lqx36y4bj6rf3vhzsxny3"; depends=[assertthat caret deldir digest distances dplyr filelock furrr ggplot2 MASS purrr R_utils ranger readr rlang rlist stringr tibble tidyr withr]; }; - mitch = derive2 { name="mitch"; version="1.6.0"; sha256="1hllnfrc191dz4m8w9b1c4r2l0f44v9nrjan0kmmxhkki408isyn"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra knitr MASS plyr reshape2 rmarkdown]; }; - mitoClone2 = derive2 { name="mitoClone2"; version="1.0.0"; sha256="1miycq8vc79i3x2nl44b5icsbnp23brljc3ic92byk0zdcp3dqh5"; depends=[deepSNV GenomicRanges ggplot2 pheatmap reshape2 Rhtslib S4Vectors]; }; - mixOmics = derive2 { name="mixOmics"; version="6.18.1"; sha256="1wpskrnl2bry9m4k2djhjddcd8gpwf51gp5c3si1y7qxja78ql9f"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; - mnem = derive2 { name="mnem"; version="1.10.0"; sha256="078x80j1jh7drv4fkly9gayiajszjvbjfk82aslicajh9hn04rmq"; depends=[cluster data_table e1071 flexclust ggplot2 graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne wesanderson]; }; - moanin = derive2 { name="moanin"; version="1.2.0"; sha256="1fd4hi32krzwbpxz2qn1sh26zph94lvfkx4gc7dga911r3cms8y2"; depends=[ClusterR edgeR limma MASS matrixStats NMI reshape2 S4Vectors SummarizedExperiment topGO viridis zoo]; }; - mogsa = derive2 { name="mogsa"; version="1.28.0"; sha256="0a7d81grd3dn1im4q0xss0qqvgbas9yh5lc24fz05hbfbzwgzr2l"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; - monaLisa = derive2 { name="monaLisa"; version="1.0.0"; sha256="0idfq3l3sxx2gxcksvvk6ayyv2zb9hb5bls6dkincv7mraa20max"; depends=[BiocGenerics BiocParallel Biostrings BSgenome circlize ComplexHeatmap GenomeInfoDb GenomicRanges glmnet IRanges S4Vectors stabs SummarizedExperiment TFBSTools vioplot XVector]; }; - monocle = derive2 { name="monocle"; version="2.22.0"; sha256="0wb2c1jf502lrfx3d0amb09fvhalrwxvpsp99jsab162v4hddg85"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree densityClust dplyr fastICA ggplot2 HSMMSingleCell igraph irlba limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; - mosaics = derive2 { name="mosaics"; version="2.32.0"; sha256="09qz4xl9xhzidw0w41bp0adkbhnasa309yn8rdi9nsfpswhaiysb"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; - mosbi = derive2 { name="mosbi"; version="1.0.3"; sha256="1l3zvc2pwd0z37v28fabrxnzfq53fmg58p3jhwb6mzi8rdmq6vak"; depends=[akmbiclust BH biclust fabia igraph isa2 QUBIC RColorBrewer Rcpp RcppParallel xml2]; }; - motifStack = derive2 { name="motifStack"; version="1.38.0"; sha256="1ck6bbnrab8mbf70alfdsrcv6lq0fkvcy3klhcwyxxir7r9sgbaz"; depends=[ade4 Biostrings ggplot2 htmlwidgets XML]; }; - motifbreakR = derive2 { name="motifbreakR"; version="2.8.0"; sha256="0lrgy64sv2ma6kylp4lsbwkg6ci1kn6qkk0cvzw3m4k3bgia1npj"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr SummarizedExperiment TFMPvalue VariantAnnotation]; }; - motifcounter = derive2 { name="motifcounter"; version="1.18.0"; sha256="17yhhg423yjhaix9x2w2484l22vj6ra086ymzdfhygnjz5vanpmd"; depends=[Biostrings]; }; - motifmatchr = derive2 { name="motifmatchr"; version="1.16.0"; sha256="0f7j54zdn51h1gcn81vqs8avmschjwqprjcfpvsi00q4fna3fg7z"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; - mpra = derive2 { name="mpra"; version="1.16.0"; sha256="14klqy7d5vkn3vhcjwra8s1bm5ck4llq3ha6yggdl5mqy5vxmv81"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; - msImpute = derive2 { name="msImpute"; version="1.4.0"; sha256="0lw5300xfk001sqrips77y2qfg5qjdapd2snsnz6gcgnhj7ds82c"; depends=[data_table dplyr FNN limma matrixStats mvtnorm pdist reticulate scran softImpute tidyr]; }; - msPurity = derive2 { name="msPurity"; version="1.20.0"; sha256="0pawspfpwp88y0q88qjsiwmjjbdscg80jv14lj2fdf11bbsra78v"; depends=[DBI dbplyr doSNOW dplyr fastcluster foreach ggplot2 jsonlite magrittr mzR plyr Rcpp reshape2 RSQLite stringr uuid]; }; - msa = derive2 { name="msa"; version="1.26.0"; sha256="0kz99bnzslnqpvmqr2x2wxiasm3rzpg4lhl9ax3dp5rmkba7hp69"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; - msgbsR = derive2 { name="msgbsR"; version="1.18.0"; sha256="1hapz3rywf0znhl7r5zrh0vznnkqlg8gyz4bbqj1wn64346xsd7y"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; - msmsEDA = derive2 { name="msmsEDA"; version="1.32.0"; sha256="1jammjkjjkcqad2ki02l2pdf4jybyh71hv463aya2ylmzsin5vi9"; depends=[gplots MASS MSnbase RColorBrewer]; }; - msmsTests = derive2 { name="msmsTests"; version="1.32.0"; sha256="0xmjgd8rqpb8i7d46pvnj7da2di8bwfdncr48b8hgylkc98ghznb"; depends=[edgeR msmsEDA MSnbase qvalue]; }; - msqrob2 = derive2 { name="msqrob2"; version="1.2.0"; sha256="0ab9b26x8syybqmij56wjsjrmv8xyjsprrrskyz9qi7fr23mp0zc"; depends=[BiocParallel codetools limma lme4 MASS Matrix purrr QFeatures SummarizedExperiment]; }; - multiClust = derive2 { name="multiClust"; version="1.24.0"; sha256="1i06khc4yc134ny5m6i77c203pvm8r06rkplz5sd9jgjkbg68lkq"; depends=[amap cluster ctc dendextend mclust survival]; }; - multiGSEA = derive2 { name="multiGSEA"; version="1.4.0"; sha256="1nqj0pc7nj77910id5nm9sv0s1mxahjfgl3jdhpnn52q7md9y1d9"; depends=[AnnotationDbi dplyr fgsea graphite magrittr metap rappdirs rlang]; }; - multiHiCcompare = derive2 { name="multiHiCcompare"; version="1.12.0"; sha256="1b56jagvgnlw7vrrd728fm14p754gx46wyb5q5yhqj0mshnv6xh4"; depends=[aggregation BiocParallel data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare pbapply pheatmap qqman]; }; - multiMiR = derive2 { name="multiMiR"; version="1.16.0"; sha256="06mvikmy018z6zhzwg999kvmccgprd5k4hy64l1fscv0ax6rp6b8"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; - multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.18.0"; sha256="0kg72l5zdffsnsw1yxld52j7mjbjybvqmbr11vby93jnsxxvlfm9"; depends=[doParallel foreach SummarizedExperiment]; }; - multiSight = derive2 { name="multiSight"; version="1.2.0"; sha256="06gjldjssrmf09fc6i9m0z3b7vzqyb48279333cai4gy1g9aba4w"; depends=[anyLib biosigner caret clusterProfiler config DESeq2 dplyr DT easyPubMed enrichplot golem htmltools igraph infotheo metap mixOmics networkD3 ppcor R6 ReactomePA rmarkdown rWikiPathways shiny shinydashboard stringr]; }; - multicrispr = derive2 { name="multicrispr"; version="1.4.3"; sha256="1x66hlp6vv3m7q8717a46xrhb2whnriw1mb5qsnqsm0v9bws12ix"; depends=[assertive BiocGenerics Biostrings BSgenome CRISPRseek data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 karyoploteR magrittr plyranges Rbowtie reticulate rtracklayer stringi tidyr tidyselect]; }; - multiscan = derive2 { name="multiscan"; version="1.54.0"; sha256="0qjh302hpld7zdrfqkbx8a5hrp3bwfn539pv36mwizjigjznnsi9"; depends=[Biobase]; }; - multtest = derive2 { name="multtest"; version="2.50.0"; sha256="03z71r7g318nwwgiz0k8qwbhghw1hhdhh1an4qnb0nc62c5x9kns"; depends=[Biobase BiocGenerics MASS survival]; }; - mumosa = derive2 { name="mumosa"; version="1.2.0"; sha256="093mzbkx7sf5gg5qcvyzgkfzzdpjm8pd6hb7dwavcjxf90y14l1h"; depends=[batchelor beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph IRanges Matrix metapod S4Vectors ScaledMatrix scran scuttle SingleCellExperiment SummarizedExperiment uwot]; }; - muscat = derive2 { name="muscat"; version="1.8.2"; sha256="1dlzr1swv0mfaj1kj5m0plvmh72djfwqkl1517r0kf74xj6hab7k"; depends=[BiocParallel blme ComplexHeatmap data_table DESeq2 dplyr edgeR ggplot2 glmmTMB limma lme4 lmerTest Matrix matrixStats progress purrr S4Vectors scales scater sctransform scuttle SingleCellExperiment SummarizedExperiment variancePartition viridis]; }; - muscle = derive2 { name="muscle"; version="3.36.0"; sha256="0a081ay0360h0r9731d145prdg15d1g96s7zzcn411qa8fwg7rv0"; depends=[Biostrings]; }; - musicatk = derive2 { name="musicatk"; version="1.4.0"; sha256="168578fg6gmg48gwd6944ln30g75nyq16yzyjw175yanj09g9qfs"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 cluster ComplexHeatmap cowplot data_table decompTumor2Sig deconstructSigs dplyr factoextra GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra gtools IRanges maftools magrittr MASS matrixTests MCMCprecision NMF philentropy plotly rlang S4Vectors shiny shinyalert shinyBS shinybusy shinydashboard shinyjqui shinyjs sortable stringi stringr SummarizedExperiment TCGAbiolinks tibble tidyr topicmodels TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene uwot VariantAnnotation withr]; }; - mygene = derive2 { name="mygene"; version="1.30.0"; sha256="1s9hlcj9g2a3q2aa3ahjk3j2ksk4v9mpax1cxm739gywaf4sbknp"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; - myvariant = derive2 { name="myvariant"; version="1.24.0"; sha256="1d87iwfpfwppzdahai0rv85ky855n4slqhb9gpb4lf4yx6r11i9i"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; - mzID = derive2 { name="mzID"; version="1.32.0"; sha256="0r001amd4m99cv0ixw38rpz0zv0xqb0qyvs16bz1i4a756391qri"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; - mzR = derive2 { name="mzR"; version="2.28.0"; sha256="1azq0wjjy6n5xc721gjz6afm43ajz15b4p34vgsdjzwg9qn1vrs1"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib zlibbioc]; }; - nanotatoR = derive2 { name="nanotatoR"; version="1.10.0"; sha256="13q73fzzwf2whhba0phl91dn9ra71rgc7lkzh241z2sygy7xgwgk"; depends=[AnnotationDbi curl dplyr GenomicRanges hash httr knitr openxlsx org_Hs_eg_db rentrez rlang stringr testthat tidyverse VarfromPDB XML XML2R]; }; - ncGTW = derive2 { name="ncGTW"; version="1.8.0"; sha256="1f5qsfbgwv5zr0ddxymqkbszahr0l5vsa458bl23qj6x4j76zzwf"; depends=[BiocParallel Rcpp xcms]; }; - ncRNAtools = derive2 { name="ncRNAtools"; version="1.4.0"; sha256="17vil5xl9092mf0jh2282y7zw701id4xdajrcwypzgn89nw91lra"; depends=[GenomicRanges ggplot2 httr IRanges S4Vectors xml2]; }; - ncdfFlow = derive2 { name="ncdfFlow"; version="2.40.0"; sha256="1c6wb2x24ydqp5nxrx6bhj6f13x9djfy9awkc7zn63xkag7mvvar"; depends=[BH Biobase BiocGenerics flowCore Rcpp RcppArmadillo Rhdf5lib zlibbioc]; }; - ndexr = derive2 { name="ndexr"; version="1.16.0"; sha256="0px1v1iiqpryr07lnk56bg0i9aiqhvk2l556bp5vyzillf98gf76"; depends=[httr igraph jsonlite plyr tidyr]; }; - nearBynding = derive2 { name="nearBynding"; version="1.4.0"; sha256="12m44v7ydfzdqzpx4881ls6mg1npgwd549wxjlndamkzj41yha4q"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicRanges ggplot2 gplots magrittr matrixStats plyranges R_utils rlang Rsamtools rtracklayer S4Vectors transport TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - nempi = derive2 { name="nempi"; version="1.2.0"; sha256="0srpf4aryl59n186628869rxrwp3qmcx8zzslrxfflayijk4gyps"; depends=[e1071 epiNEM matrixStats mnem naturalsort nnet randomForest]; }; - netDx = derive2 { name="netDx"; version="1.6.0"; sha256="1xpsm10p0nhkr75j55s046hbg86rkwg8xz2jq0b5al8y461a79m4"; depends=[bigmemory BiocFileCache combinat doParallel foreach GenomeInfoDb GenomicRanges ggplot2 glmnet httr igraph IRanges MultiAssayExperiment plotrix pracma rappdirs RColorBrewer reshape2 ROCR Rtsne S4Vectors]; }; - netOmics = derive2 { name="netOmics"; version="1.0.0"; sha256="0mq6f5ggrmx07s3lg9g707p3r42pw6yznzjsh04bl39cz0v8vp86"; depends=[AnnotationDbi dplyr ggplot2 GO_db gprofiler2 igraph magrittr minet purrr RandomWalkRestartMH tibble tidyr]; }; - netSmooth = derive2 { name="netSmooth"; version="1.14.0"; sha256="18bf8bplhvm9igkgdydbr05qrjz9l9jhbkj50a5r6flsiwwn8xi0"; depends=[cluster clusterExperiment data_table DelayedArray entropy HDF5Array Matrix scater SingleCellExperiment SummarizedExperiment]; }; - netbiov = derive2 { name="netbiov"; version="1.28.0"; sha256="0x2sk4zfrwb2xzdj5iywadsdlrzc4s20rxdca8dc9hssb88cyjqf"; depends=[igraph]; }; - netboost = derive2 { name="netboost"; version="2.2.0"; sha256="1v52srmvvzxzv0flai5x3z2rmdxgsj8qp6y599xf7mv2n8v5wwnc"; depends=[colorspace dynamicTreeCut impute R_utils Rcpp RcppParallel WGCNA]; }; - netboxr = derive2 { name="netboxr"; version="1.6.0"; sha256="0clajqn8v9cg3cpzhqkcjb8l7mi6jdyglhlwnaaq2ic6nn9g7cfc"; depends=[clusterProfiler data_table DT gplots igraph jsonlite plyr RColorBrewer]; }; - nethet = derive2 { name="nethet"; version="1.26.0"; sha256="0bf218y1975n4h1kr1vgqrzk7n6wm7gvbplz1abcq11j601vgql7"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network]; }; - netprioR = derive2 { name="netprioR"; version="1.20.0"; sha256="0fmgvwblirhmqz41m2p1wjmj6wv60syw3k527s7110a3nxhgxxk5"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; - netresponse = derive2 { name="netresponse"; version="1.54.0"; sha256="0a0w58ws8p6x2skavags5313v9lb51rbjqzsyi17kd0ipmgxld08"; depends=[BiocStyle dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz rmarkdown]; }; - networkBMA = derive2 { name="networkBMA"; version="2.34.0"; sha256="00r7ibf2h294c862l1hd78q72d451hgm2axyvzka8xbp58w3dp8g"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; }; - ngsReports = derive2 { name="ngsReports"; version="1.10.0"; sha256="03d09hrwp8091lp8nz58vc72x7dlybcb6i0w8nkidlmq7ygyywri"; depends=[BiocGenerics Biostrings checkmate dplyr DT forcats ggdendro ggplot2 lifecycle lubridate pander plotly readr reshape2 rmarkdown scales stringr tibble tidyr tidyselect zoo]; }; - nnNorm = derive2 { name="nnNorm"; version="2.58.0"; sha256="10zjdlk9y0sdni8yjany42812b06p23v33cq6kxbv6d1cb6z9s81"; depends=[marray nnet]; }; - nondetects = derive2 { name="nondetects"; version="2.24.0"; sha256="1pb5z3k46ksllrzal4x0hsikzhqdbx0kgrs0ad04sj8xh5zhmmdh"; depends=[arm Biobase HTqPCR limma mvtnorm]; }; - normalize450K = derive2 { name="normalize450K"; version="1.22.0"; sha256="0gc2jrd5mynywl7bqdl077scapl8jnis9m9ngrn8wdlv512sahlr"; depends=[Biobase illuminaio quadprog]; }; - normr = derive2 { name="normr"; version="1.20.0"; sha256="1azfvgs6cfngqaqjfj916jdf2p2ywld62yy82wflxlvciyrwf0qy"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; - npGSEA = derive2 { name="npGSEA"; version="1.30.0"; sha256="0zfbncj8x218i5yc4wymm8nckkhygvaz8kgpfpr0j2qnwsxkw8xh"; depends=[Biobase BiocGenerics GSEABase]; }; - nuCpos = derive2 { name="nuCpos"; version="1.12.0"; sha256="1sqanvdhmvbyr52mc5hvsp2kdfgy8d8bh2w4av213i96nqmz55vw"; depends=[]; }; - nucleR = derive2 { name="nucleR"; version="2.26.0"; sha256="0wfgfjrjvd0gg7i2zjxsc37dk3s7cw4jqd41hrqq31m2iqgbk6lk"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; - nucleoSim = derive2 { name="nucleoSim"; version="1.22.0"; sha256="1y0f8dlarb5cm3na691ik04f3vwzdfzbd9fvffcgkfj9py6y28n5"; depends=[IRanges S4Vectors]; }; - nullranges = derive2 { name="nullranges"; version="1.0.1"; sha256="1cj57qq6hhkva2n1nx8d6mbmk04w86h987rydxg61cfc5k1b0j0p"; depends=[data_table GenomeInfoDb GenomicRanges ggplot2 ggridges InteractionSet IRanges ks plyranges progress rlang S4Vectors scales speedglm]; }; - occugene = derive2 { name="occugene"; version="1.54.0"; sha256="0kri0356b4560liv9c64nvjmyyssyb93xh244k1k2q50yy5il5b0"; depends=[]; }; - odseq = derive2 { name="odseq"; version="1.22.0"; sha256="14bkx7b1pc3kdmn1s9vbc5rb3wxzyyi8n56yrkiqvxc99zl3s9cr"; depends=[kebabs mclust msa]; }; - oligo = derive2 { name="oligo"; version="1.58.0"; sha256="1cmnnq0d5xsjsx8c8n8wcl6l9d31sbglb8yrsibykcvnhw15fsf6"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; - oligoClasses = derive2 { name="oligoClasses"; version="1.56.0"; sha256="1ia2f19swiwb0552nfwkai4gl0av07cj75b6jwiviqa1bli09264"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; - omicRexposome = derive2 { name="omicRexposome"; version="1.16.0"; sha256="0wznnvql0fyv7c2m5sd6668gf1j1vdjc0wa225kkyzm7qxj4gzyv"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; - omicade4 = derive2 { name="omicade4"; version="1.34.0"; sha256="0lq71sya6lxy0j33d97gf28mvvkir6820css5d23fc7si27w5swm"; depends=[ade4 Biobase made4]; }; - omicplotR = derive2 { name="omicplotR"; version="1.14.0"; sha256="1pwflkxmg1ava97llh7n5gcr6zvl9dlc5c2bgy6k6nz0sy0mnv8j"; depends=[ALDEx2 compositions DT jsonlite knitr matrixStats rmarkdown shiny vegan zCompositions]; }; - omicsPrint = derive2 { name="omicsPrint"; version="1.14.0"; sha256="1330hxwyivyrcn32xszf5h0mlxxxdih5jn4g12b8vv004a2lqnzd"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; - oncomix = derive2 { name="oncomix"; version="1.16.0"; sha256="170b7xyb7j5hwhlwl3dziq7h9wckglibaw04kcya4fnjh3zjry21"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; - oneSENSE = derive2 { name="oneSENSE"; version="1.16.0"; sha256="1c6zjw6yfndb0gj974481c9jc2wb3l0c01zlk89z3i0nxs6bvkj9"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; }; - onlineFDR = derive2 { name="onlineFDR"; version="2.2.0"; sha256="0qqkxfq3993xqs44yj171s5bj992m4g79rzbc3ysja1afcxln5z7"; depends=[dplyr ggplot2 progress Rcpp RcppProgress tidyr]; }; - ontoProc = derive2 { name="ontoProc"; version="1.16.0"; sha256="15ds6n3dn3l45vdzmc7qp3wk0ndx7q6yhnwa2ywnlljl8jvi83qj"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache dplyr DT graph igraph magrittr ontologyIndex ontologyPlot Rgraphviz S4Vectors shiny]; }; - openCyto = derive2 { name="openCyto"; version="2.6.0"; sha256="11svr1lk383pkm4npwrnf3h37b3drjsmcwcgdbb45x8k2k95z2fm"; depends=[Biobase BiocGenerics clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; - openPrimeR = derive2 { name="openPrimeR"; version="1.16.0"; sha256="078pqsxs7017jgswrlzrsbn42q84q3wj7h83paldsc9js3mxcbp9"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; }; - openPrimeRui = derive2 { name="openPrimeRui"; version="1.16.0"; sha256="0h3ic5lpf5i0dykirdbzac1f2vdbiq4cfxi4iyj612ayd3arlg6h"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; - oposSOM = derive2 { name="oposSOM"; version="2.12.0"; sha256="14ib08i4hf3cyakp7hv994qapbl3kqnbyvsr26i45v6l9s90v37b"; depends=[ape Biobase biomaRt fastICA fdrtool graph igraph pixmap png Rcpp RcppParallel RCurl scatterplot3d tsne XML]; }; - oppar = derive2 { name="oppar"; version="1.22.0"; sha256="1sx5wqim9aiz3q5xc68am73lwj98g9mwgnzgb4yggjbvfh05aylf"; depends=[Biobase GSEABase GSVA]; }; - oppti = derive2 { name="oppti"; version="1.8.0"; sha256="0rvsk9lry3ffssrg5r6wpwxjhy7qf6y5agixn8l8pnwq6afsh012"; depends=[devtools ggplot2 knitr limma parallelDist pheatmap RColorBrewer reshape]; }; - optimalFlow = derive2 { name="optimalFlow"; version="1.6.0"; sha256="1bl3ji4cqgiv9krhsapz4hrzda4jszb9r9pl095sxs6pzaa2ssyp"; depends=[dbscan doParallel dplyr ellipse flowMeans foreach optimalFlowData randomForest Rfast rgl rlang robustbase transport]; }; - orthogene = derive2 { name="orthogene"; version="1.0.0"; sha256="113l8qwq9vv8dhah5lrvm68g60562pmwfzdaipykznmkix1cqsl0"; depends=[babelgene data_table DelayedArray DelayedMatrixStats dplyr GenomeInfoDbData ggplot2 ggpubr gprofiler2 grr homologene jsonlite Matrix Matrix_utils patchwork repmis]; }; - pRoloc = derive2 { name="pRoloc"; version="1.34.0"; sha256="1gzvd5ll0xdx6v6rzfvnjwijpvisl8x61fihyqh1gwz2zqxm86bz"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; - pRolocGUI = derive2 { name="pRolocGUI"; version="2.4.0"; sha256="1qpr92ryjw8w2sxlycmfr9x5z6l9wnvvvy7ylrwr936x9ph6zzys"; depends=[Biobase BiocGenerics colorspace colourpicker dplyr DT ggplot2 MSnbase pRoloc scales shiny shinydashboard shinydashboardPlus shinyhelper shinyjs shinyWidgets]; }; - packFinder = derive2 { name="packFinder"; version="1.6.0"; sha256="143w988hqbk13wbvkm88fdv2j8ki9m4q3ar25cfp0ahpjx2r6d0c"; depends=[ape Biostrings GenomicRanges IRanges kmer S4Vectors]; }; - padma = derive2 { name="padma"; version="1.4.0"; sha256="1gs2g5w712vankyyndqn1j3jl3lfm2qq6bizq7rywiih06hnawcl"; depends=[FactoMineR MultiAssayExperiment S4Vectors SummarizedExperiment]; }; - pageRank = derive2 { name="pageRank"; version="1.4.0"; sha256="0j5310jfgxgmiqzsjchilxyjim4c6ar0qw97kpm8d9h2cvnk20rd"; depends=[GenomicRanges igraph motifmatchr]; }; - paircompviz = derive2 { name="paircompviz"; version="1.32.0"; sha256="1hp42pc2y4km8n1ry9r4hx3wfm92c7yaliz68m2yr7vjx11x1nid"; depends=[Rgraphviz]; }; - pairkat = derive2 { name="pairkat"; version="1.0.0"; sha256="0siqm6xsbqr96528kw8yqmr7bc5p7d8y56gpa6hmnrds3bh450r2"; depends=[CompQuadForm data_table dplyr igraph KEGGREST magrittr S4Vectors SummarizedExperiment tibble]; }; - pandaR = derive2 { name="pandaR"; version="1.26.0"; sha256="0aj4iwvpg75b78rh5z430x2lzq4yf4789vylgdlgas62z81fl71l"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; - panelcn_mops = derive2 { name="panelcn.mops"; version="1.16.0"; sha256="1rais9gasa0ll1kfrxmxcxg7dg5d2sq6057anlzw4ri6fgvsnv4z"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; - panp = derive2 { name="panp"; version="1.64.0"; sha256="1z3pwb9gx4pgrzvx6ziph5bb85n2j6c18xby0rrmsvr7x19q16nc"; depends=[affy Biobase]; }; - parglms = derive2 { name="parglms"; version="1.26.0"; sha256="09p7iplwa802sjrr246a3pdsjpy1s2ywk82n6yjryf13mfp0vdf8"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; - parody = derive2 { name="parody"; version="1.52.0"; sha256="1f1bwy2pmjcwfnxmy0sqlfmvg0wp18m1m78wr3s1qr9qlqpi5ln8"; depends=[]; }; - pathRender = derive2 { name="pathRender"; version="1.62.0"; sha256="1an9fqsyjyvshmwmqh0csz9l72xra2sml2b65sbmnm18mj7agayj"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; - pathVar = derive2 { name="pathVar"; version="1.24.0"; sha256="18zdzn17p701ad1yr8ma6jiaxd3w56j73j1sqkk9b9nyjkfnk122"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; - pathifier = derive2 { name="pathifier"; version="1.32.0"; sha256="14fsmslhv6cil4mpi7z3pg7ygpj3d36962xswl89j4zr3663vk3f"; depends=[princurve R_oo]; }; - pathview = derive2 { name="pathview"; version="1.34.0"; sha256="1jdl81lvrsz03b1nws90nssf2clipipzaqvwm1pq57mvshnlnkjr"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; - pathwayPCA = derive2 { name="pathwayPCA"; version="1.10.0"; sha256="01m2g8icx7gq4fpxxxm356wr8wc5dmq3lnvr1s5dj1qqm4hk70xr"; depends=[lars survival]; }; - paxtoolsr = derive2 { name="paxtoolsr"; version="1.28.0"; sha256="0c72fp6nisv6j0rkzw4yip3f94wq990nkmaw3h7lv5r5gpj9b69x"; depends=[httr igraph jsonlite plyr R_utils rappdirs readr rJava rjson XML]; }; - pcaExplorer = derive2 { name="pcaExplorer"; version="2.20.2"; sha256="1ayixqyds0ma3ph66i3456jfl5bf528vkwi3ja792av5qsn701jx"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; - pcaMethods = derive2 { name="pcaMethods"; version="1.86.0"; sha256="1fj2v6sna4lbw7ar9h93y2g4pzylqqp7760ih425gcai7s19xdrg"; depends=[Biobase BiocGenerics MASS Rcpp]; }; - pcxn = derive2 { name="pcxn"; version="2.16.0"; sha256="1n61gn1k74k61rrfp340kjchafrfmfidslkqxdr0ijbacbp017qw"; depends=[pcxnData pheatmap]; }; - pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.58.0"; sha256="1vk0kppsg9vynwzflkv3frv16hsl43lpk9awr6x22a1frmpndj10"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; - peakPantheR = derive2 { name="peakPantheR"; version="1.8.0"; sha256="0czryplga40w5ipzqwzil48vyxll6pscpy80r0gwzxw0mw0sw80k"; depends=[doParallel DT foreach ggplot2 gridExtra minpack_lm MSnbase mzR pracma scales shiny shinycssloaders shinythemes stringr XML]; }; - peco = derive2 { name="peco"; version="1.6.0"; sha256="14h7lmijllffhwpybpcvgkzpj5i0n1pbf25gbjgkyzyn21fcf93g"; depends=[assertthat circular conicfit doParallel foreach genlasso scater SingleCellExperiment SummarizedExperiment]; }; - pengls = derive2 { name="pengls"; version="1.0.0"; sha256="0415pxlxd2dmr5zphjrszylglj8hjrifawxzmfz2ns8p9hagr0f4"; depends=[BiocParallel glmnet nlme]; }; - pepStat = derive2 { name="pepStat"; version="1.28.0"; sha256="07k5hilmnjhqcndq6vmibargf7fr0ah4zpcd2mm6656w3xy1ywax"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; - pepXMLTab = derive2 { name="pepXMLTab"; version="1.28.0"; sha256="0wk502spk5cmhvygnirfywk4dq13imvvbnxy97ak2c011phpaxf1"; depends=[XML]; }; - periodicDNA = derive2 { name="periodicDNA"; version="1.4.0"; sha256="1v6rl234qs0la2r7qwiahslw7yr8mppcdcpand2lk8w862k67nda"; depends=[BiocParallel Biostrings BSgenome cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr rtracklayer S4Vectors zoo]; }; - pgca = derive2 { name="pgca"; version="1.18.0"; sha256="1wrp4k0b1sj75yhw799aqcb6dmimza6gvcxkn5ayfn6x3hfifwwl"; depends=[]; }; - phantasus = derive2 { name="phantasus"; version="1.14.0"; sha256="0p8xa0jqasgn61qzzva7wrjk8d2xcsn9kd20c4dbc61sg3cxrcir"; depends=[AnnotationDbi assertthat Biobase ccaPP curl DESeq2 fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; - phemd = derive2 { name="phemd"; version="1.10.0"; sha256="1n3xvw9x3600pwv2wk7mbgal0lr6zpkwziy0whlkdkxzbgy9xzaw"; depends=[Biobase BiocGenerics cluster cowplot destiny ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; }; - phenoTest = derive2 { name="phenoTest"; version="1.42.0"; sha256="0ci44hwicvz32sgv6mywawyygd1wzz2bayx6rshwvpmz1mixncq6"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach limma mgcv survival xtable]; }; - phenopath = derive2 { name="phenopath"; version="1.18.0"; sha256="1c0cxm3cwxprjkkwimzgjz0h67dykx2jy7jin13h7vzpwwvphh2p"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; - philr = derive2 { name="philr"; version="1.20.1"; sha256="1ra7wnnn0blxvxvsa570cf6jiqd9fh0ki90j2vbckrzh33z6plyv"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; - phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.18.0"; sha256="0qbls06h7fkqsg8yhnc8dmbqhkgxxxa29j3h7cwxdq4nvg66frjl"; depends=[matrixStats plyr]; }; - phyloseq = derive2 { name="phyloseq"; version="1.38.0"; sha256="0k0aj8f7g1vr7l0qcc507b3w67zc1k9x7sdblm7mjb20zqr3916s"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; - piano = derive2 { name="piano"; version="2.10.1"; sha256="0x4d7p273mh6pw2gi5rlv493j9kzpzbzkzgwl82snsqab4ljdg2r"; depends=[Biobase BiocGenerics DT fgsea gplots htmlwidgets igraph marray relations scales shiny shinydashboard shinyjs visNetwork]; }; - pickgene = derive2 { name="pickgene"; version="1.66.0"; sha256="0l5gk659gxh7i0sq3j1dg1v69p108ig84d735dv3x8mf9bq1mfhk"; depends=[MASS]; }; - pipeComp = derive2 { name="pipeComp"; version="1.4.0"; sha256="1r61m3468b4v3vw60yywgxs4r4w1lr55wgwndll6wfh62pzgvrf2"; depends=[aricode BiocParallel circlize clue cluster ComplexHeatmap cowplot dplyr ggplot2 intrinsicDimension knitr Matrix matrixStats randomcoloR RColorBrewer reshape2 Rtsne S4Vectors scales scater scran Seurat SingleCellExperiment SummarizedExperiment uwot viridisLite]; }; - pipeFrame = derive2 { name="pipeFrame"; version="1.10.0"; sha256="0463z7kyaar474yfa05j754df49yasl3qmsfxz0qb3y1d7p37grr"; depends=[Biostrings BSgenome digest GenomeInfoDb magrittr rmarkdown visNetwork]; }; - pkgDepTools = derive2 { name="pkgDepTools"; version="1.60.0"; sha256="1ah9fzrwj9cc1vnv66dp27w41w9c7k48xzn7phwiavyn786k1ajf"; depends=[graph RBGL]; }; - planet = derive2 { name="planet"; version="1.2.0"; sha256="1cw4v69rfi2d0awpxcvhr0jvnbavvjmsnhkaqkq8538adbf7x7mr"; depends=[dplyr magrittr tibble]; }; - plethy = derive2 { name="plethy"; version="1.32.0"; sha256="0zn8jm525rxpbr268f98iqrwn27hw07s9sg9ln6mh9j05pqdjkcr"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; - plgem = derive2 { name="plgem"; version="1.66.0"; sha256="06w8xlw4j1fc9ipdgw55dvhp07f04icmhr20lqzwwhqd5pskrra3"; depends=[Biobase MASS]; }; - plier = derive2 { name="plier"; version="1.64.0"; sha256="1sw89kici1h2xfg7zvrfdm7b7iw5n3mzwhyz82676w2vk0lgkpn4"; depends=[affy Biobase]; }; - plotGrouper = derive2 { name="plotGrouper"; version="1.12.0"; sha256="191grbs8sy8jfxz9a6vsp9qf3zaqppp23fcl5qdrmfzims9krhlw"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; - plotgardener = derive2 { name="plotgardener"; version="1.0.17"; sha256="0jlmakxvwsm1gyhkyncdiipljidf0ymab2illj0gpiwaij9fhd67"; depends=[curl data_table dplyr ggplotify IRanges plyranges purrr RColorBrewer Rcpp rlang strawr]; }; - plyranges = derive2 { name="plyranges"; version="1.14.0"; sha256="1s4zyr57x71v9ywdz6s27z158nhazwhmhkx3944l8zsqd5ciwnnc"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; - pmm = derive2 { name="pmm"; version="1.26.0"; sha256="0vmkpqxf0lfgkbmyvham128201d33dv3wf9g31nrlwnxd0jcxszn"; depends=[lme4]; }; - pmp = derive2 { name="pmp"; version="1.6.0"; sha256="15yggymqh329f2ibhmg9wmh76hbyn0gpz9k1cxzkvh787lss1w72"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; - podkat = derive2 { name="podkat"; version="1.26.0"; sha256="0xj0cvw5wj29qfdjs25gawxm2fpbd1dypga54j0fi7nzp94y8ydr"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rhtslib Rsamtools]; }; - pogos = derive2 { name="pogos"; version="1.14.1"; sha256="0h4h5j7mv50zg0sm2hzcpwpdj6738crr1szjj13zkh828p7khd55"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; - polyester = derive2 { name="polyester"; version="1.30.0"; sha256="0399jal3f2f4bxfxclx54rxxs8azvm63whjiqwrnkq0s3n7wd08y"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; - powerTCR = derive2 { name="powerTCR"; version="1.14.0"; sha256="0c7crgiwpizynl1bd4i5si96kw7cffnnhsbz4w44a3wd1d6ibk4g"; depends=[cubature doParallel evmix foreach magrittr purrr truncdist vegan VGAM]; }; - ppcseq = derive2 { name="ppcseq"; version="1.2.0"; sha256="1rjqyq31lm54apznp3ymk8mm3vcyq4yxz026awy3dh4s53nzsv0a"; depends=[benchmarkme BH dplyr edgeR foreach furrr future ggplot2 lifecycle magrittr purrr Rcpp RcppEigen rlang rstan rstantools StanHeaders tibble tidybayes tidyr]; }; - ppiStats = derive2 { name="ppiStats"; version="1.60.0"; sha256="1xidx2dc1vi9p6m4k73afy9whhl2hv7yk3m6w5ari9ya0h20qccp"; depends=[Biobase Category graph lattice RColorBrewer]; }; - pqsfinder = derive2 { name="pqsfinder"; version="2.10.1"; sha256="0n4l24gazq2x5p9cf87gd7hzv3xhaf8r27ag3nh69mr680amxx7h"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; - pram = derive2 { name="pram"; version="1.10.0"; sha256="09429ara5j09429iz66s921nr5n6wgq0ib3zlw63v237findgjm3"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; - prebs = derive2 { name="prebs"; version="1.34.0"; sha256="1dxsz7z5x1cx21gmvh02dy9h7d8rxz5ycwmj2xppr69hlsvvjh9p"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; - preciseTAD = derive2 { name="preciseTAD"; version="1.4.0"; sha256="0wb5d3qbz8hd7hnw0mb4vqc4b1v1x7fwskii4kfpmv0bafck5vvd"; depends=[caret cluster dbscan doSNOW e1071 foreach GenomicRanges gtools IRanges ModelMetrics pbapply pROC PRROC randomForest rCGH S4Vectors]; }; - predictionet = derive2 { name="predictionet"; version="1.40.0"; sha256="1f3ghlcfnls9mx2hbs923rdz7kn0wdhy2csp1y1286c5q5dybrgh"; depends=[catnet igraph MASS penalized RBGL]; }; - preprocessCore = derive2 { name="preprocessCore"; version="1.56.0"; sha256="1i93vdqa6pwzamiryp3lv6cyvhx9shs01is0q6vbmdvcbii2vf3x"; depends=[]; }; - primirTSS = derive2 { name="primirTSS"; version="1.12.0"; sha256="0pm9yd5pd7igw5l2f9fbbi7rp2nxjqp9cn80i46q1m4bj65cgng7"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; - proActiv = derive2 { name="proActiv"; version="1.4.0"; sha256="1jnpplxd030syrjwhzcyl43a7g5dy0pmhns35kfcp5l6aw3bafkg"; depends=[AnnotationDbi BiocParallel data_table DESeq2 dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges rlang S4Vectors scales SummarizedExperiment tibble]; }; - proBAMr = derive2 { name="proBAMr"; version="1.28.0"; sha256="0bn65jf56aqabb65dqnp3zmjgmnd8q0vbhy2ddc20hcyj5v1hvb0"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; - proBatch = derive2 { name="proBatch"; version="1.10.0"; sha256="0s1276s1mfpv3psnq91k7ip1dr6x6fyw78r12zy4w1hhjqlz1g7s"; depends=[Biobase corrplot data_table dplyr ggfortify ggplot2 lazyeval lubridate magrittr pheatmap preprocessCore purrr pvca RColorBrewer reshape2 rlang scales sva tibble tidyr viridis wesanderson WGCNA]; }; - proDA = derive2 { name="proDA"; version="1.8.0"; sha256="11as09lmpls1nzy575dk9l0afx6wrv2nxbsrsq3qa40s5rh5bbj1"; depends=[BiocGenerics extraDistr S4Vectors SummarizedExperiment]; }; - proFIA = derive2 { name="proFIA"; version="1.20.0"; sha256="0bbh35pg5dby4my51m895kzgnsc8xzrniy3bjqc5v9w47nl7p6zk"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; }; - procoil = derive2 { name="procoil"; version="2.22.0"; sha256="1w2fqrxs3bm0z2qh9mmq3wz3x3iw8w7qnf8vh5zrrw87k7zpva78"; depends=[Biostrings kebabs S4Vectors]; }; - profileScoreDist = derive2 { name="profileScoreDist"; version="1.22.0"; sha256="0j5rhxsld3vqmf7kdch0hfzfiyyr66g1r1ahzmw3vz51qfkkk379"; depends=[BiocGenerics Rcpp]; }; - profileplyr = derive2 { name="profileplyr"; version="1.10.2"; sha256="0lv09nynwkxy0yd4d5ca1nnrs4r474cpvk47wd5llq7zhldlfc3z"; depends=[BiocGenerics BiocParallel ChIPseeker circlize ComplexHeatmap dplyr EnrichedHeatmap GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr org_Hs_eg_db org_Mm_eg_db pheatmap R_utils rGREAT rjson rlang Rsamtools rtracklayer S4Vectors soGGi SummarizedExperiment tidyr tiff TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene]; }; - progeny = derive2 { name="progeny"; version="1.16.0"; sha256="0zhr5i5v87akzqjb6wid67nhg2icrw6w0awdy87x848c6c1i6j9y"; depends=[Biobase dplyr ggplot2 ggrepel gridExtra tidyr]; }; - projectR = derive2 { name="projectR"; version="1.10.0"; sha256="1ny6fdjqc4smd2b7s5zknm0m8mi1wrapcbzlj4n8d1mhd1xxms0d"; depends=[cluster CoGAPS dplyr ggalluvial ggplot2 limma NMF RColorBrewer reshape2 ROCR scales viridis]; }; - proteinProfiles = derive2 { name="proteinProfiles"; version="1.34.0"; sha256="049q579x3m1sw0l5n22ldsrdkmcx61j8jlabq8kydwdhr6d9mbli"; depends=[]; }; - psichomics = derive2 { name="psichomics"; version="1.20.2"; sha256="1dlxgrlqrkippiw577r94phlh6i029kpgd9sps2qi3d0n4hmlfx9"; depends=[AnnotationDbi AnnotationHub BiocFileCache cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma pairsD3 plyr purrr R_utils Rcpp recount reshape2 Rfast shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; - psygenet2r = derive2 { name="psygenet2r"; version="1.26.0"; sha256="1fs2ljshqfyq4hnlm882fc0vd7x4sif5k3qlliqbxai6k5sdh3li"; depends=[BgeeDB Biobase biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; - ptairMS = derive2 { name="ptairMS"; version="1.2.0"; sha256="1y6wpg85058migpgyankns5v84jv4fk8n7raxxfryn85bqsn0ida"; depends=[Biobase bit64 chron data_table doParallel DT enviPat foreach ggplot2 ggpubr gridExtra Hmisc minpack_lm MSnbase plotly Rcpp rhdf5 rlang scales shiny shinyscreenshot signal]; }; - pulsedSilac = derive2 { name="pulsedSilac"; version="1.8.0"; sha256="0k2rq76bxg9cq6vjvwwx51hph6s0z1xmka62x6hv19qwakc64qnn"; depends=[cowplot ggplot2 ggridges MuMIn R_utils robustbase S4Vectors SummarizedExperiment UpSetR]; }; - puma = derive2 { name="puma"; version="3.36.0"; sha256="0li5xxvvf1346ilc6ksg0w9ri2r2w9l7cm0d7i3s2y3bai7g36ka"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; - pvac = derive2 { name="pvac"; version="1.42.0"; sha256="0zic1p12nn6yb5spkz01wr6c15cq7ilhhb2xxkxj0fsw1qalfgnb"; depends=[affy Biobase]; }; - pvca = derive2 { name="pvca"; version="1.34.0"; sha256="12d4rc29qj8sf3y3j3gfnihs7gy7gq3hnlb1ivzsqqw8rwk53cyg"; depends=[Biobase lme4 Matrix vsn]; }; - pwOmics = derive2 { name="pwOmics"; version="1.26.0"; sha256="1r38hbkyai2cf9izljp8sr2mx9ql6bznnfm9gra6kmnhlz0lrw1c"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; - pwrEWAS = derive2 { name="pwrEWAS"; version="1.8.0"; sha256="08z5phrwvpc3xaw7vzq4jam2aaba8i6vb46zm420fby7lxrc2bbx"; depends=[abind BiocManager CpGassoc doParallel doSNOW foreach genefilter ggplot2 limma pwrEWAS_data shiny shinyBS shinyWidgets truncnorm]; }; - qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.12.1"; sha256="0r1pvvlvccbsc1srim98ahsd7wg9sinnkh8mwbkkm53442r3p7fm"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer readr rlang scales stringr tibble tidyr tidyselect]; }; - qckitfastq = derive2 { name="qckitfastq"; version="1.10.0"; sha256="177agr9q2rjdk67kc2nv6idnqqk2aq595yc83r8pq6h2wp2ynmn0"; depends=[data_table dplyr ggplot2 magrittr Rcpp reshape2 rlang RSeqAn seqTools zlibbioc]; }; - qcmetrics = derive2 { name="qcmetrics"; version="1.32.0"; sha256="1wfc8v1z77wpqfslls8vkw9vi51ylnr8ssr6lm8xz1jd9zijf9ny"; depends=[Biobase knitr pander S4Vectors xtable]; }; - qpcrNorm = derive2 { name="qpcrNorm"; version="1.52.0"; sha256="0zbp5kd6lm1qg9xzg9mibcqm7r3ap9gz7fhaf07ls5q1zk63cdj9"; depends=[affy Biobase limma]; }; - qpgraph = derive2 { name="qpgraph"; version="2.28.1"; sha256="1xn414b4sibvzf2lynn3a2555kvp2lrb821dry76d2csbcdp92xk"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; - qrqc = derive2 { name="qrqc"; version="1.48.0"; sha256="1bnm1shj543kfzljlp5hzk40k6sijja161g2fi06xy2qydilxsml"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rhtslib testthat xtable]; }; - qsea = derive2 { name="qsea"; version="1.20.0"; sha256="095ais50x4csqxjj3nq7w2h3xkr4acn3bbkmqilmy7nnpj9z9dnz"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; }; - qsmooth = derive2 { name="qsmooth"; version="1.10.0"; sha256="01h7amkhbnzrp5m3j5gb1qqmfszi1qpz5vsimkrzkmpvidg932jh"; depends=[Hmisc SummarizedExperiment sva]; }; - quantiseqr = derive2 { name="quantiseqr"; version="1.2.0"; sha256="1f36i3dda8b8j332cn881sdv7bimjlzraxvy3g7m9mb4m17f97i4"; depends=[Biobase ggplot2 limSolve MASS preprocessCore rlang SummarizedExperiment tidyr]; }; - quantro = derive2 { name="quantro"; version="1.28.0"; sha256="1r2wbsndc0ji22ap27gbr1wy8icj3cjxwqlz1x0gvxkaj69mwsfq"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; - quantsmooth = derive2 { name="quantsmooth"; version="1.60.0"; sha256="137smvhk80h557mmxn0i14yp4cxlbha66jj1rqka8ln0flrak98s"; depends=[quantreg]; }; - qusage = derive2 { name="qusage"; version="2.28.0"; sha256="0sb6p8kx9kw2f5xjbiiizq5p8jxsawy8yaf18i2m8kf52f9s3scz"; depends=[Biobase emmeans fftw limma nlme]; }; - qvalue = derive2 { name="qvalue"; version="2.26.0"; sha256="1mn2qmqn89lfsx7rg54d1lwz45bfx0b91q6ahf43a1yzrrhwn138"; depends=[ggplot2 reshape2]; }; - r3Cseq = derive2 { name="r3Cseq"; version="1.40.0"; sha256="06jcj2i8p7zrwhcszv4yzpvlbqx64ryrq8jy75zp2qxilx784m2d"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; - rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.34.0"; sha256="16nx5gfa5bfmzxs01rpgx3av8lmh9k707jgj9s63zkxxnxq5gilz"; depends=[data_table XML]; }; - rCGH = derive2 { name="rCGH"; version="1.24.0"; sha256="18gk79j8li02ix6gdl27wyhmz65iqqp020zrj4ajw6l17r5d4k2y"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - rDGIdb = derive2 { name="rDGIdb"; version="1.20.0"; sha256="1f87w5r9xnbn0xyb6mf7w5rm06spqv1lv9xlakm8yhmzjhdrz1bj"; depends=[httr jsonlite]; }; - rGADEM = derive2 { name="rGADEM"; version="2.42.0"; sha256="1v8xgqqv7m2kyc38x9ppwsv87ivll5ppd6z76zcxj5yspkkrqw3v"; depends=[Biostrings BSgenome GenomicRanges IRanges seqLogo]; }; - rGREAT = derive2 { name="rGREAT"; version="1.26.0"; sha256="0kr61mhxp9phn1136fci450zwfhsipchmlm8d5rgib4lh0zbxrhl"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; - rGenomeTracks = derive2 { name="rGenomeTracks"; version="1.0.0"; sha256="011bz3phc0fyzda3rbbmbazl3lrs8zs3pb9labxz223k5ihz010h"; depends=[imager reticulate rGenomeTracksData]; }; - rRDP = derive2 { name="rRDP"; version="1.28.0"; sha256="0vxazmvljk1sb00c0ir28l2m2c57yd27bd5ii5d5dq1f5jsjxr3d"; depends=[Biostrings]; }; - rSWeeP = derive2 { name="rSWeeP"; version="1.6.0"; sha256="0dvvymh9am32ja7jh5rn927gn6g83kcrycd8brajqzwblc7acyl7"; depends=[pracma]; }; - rScudo = derive2 { name="rScudo"; version="1.10.0"; sha256="15hbmgx016qiagbjgi59ddllrrl10zk5xnkkv1rbsm63agr0kq64"; depends=[Biobase BiocGenerics igraph S4Vectors stringr SummarizedExperiment]; }; - rTRM = derive2 { name="rTRM"; version="1.32.0"; sha256="1gsg8vfrrjhhlgcwxi1qlyd2yyvbf0nigswa11s0was2bah6cai6"; depends=[AnnotationDbi DBI igraph RSQLite]; }; - rTRMui = derive2 { name="rTRMui"; version="1.32.0"; sha256="1pd8jrvfl6lvfz6bjzsna9mkdv1yryabssgq4ych0x3hhw5m1inr"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; - rWikiPathways = derive2 { name="rWikiPathways"; version="1.14.0"; sha256="1731icc36xnb76qmfk7jyyhalaf433dwr1q93m7jah36chr6x7p4"; depends=[data_table httr RCurl rjson tidyr XML]; }; - rain = derive2 { name="rain"; version="1.28.0"; sha256="0pykkqqw8mrkg71bkrhwz24fzk806hd61p8c65mxx254f4n63x5a"; depends=[gmp multtest]; }; - rama = derive2 { name="rama"; version="1.68.0"; sha256="1iq9xdbnl0p44cbngj1nj620fkd76xk2k6iyn1361iz1l9qdhf9l"; depends=[]; }; - ramr = derive2 { name="ramr"; version="1.2.0"; sha256="1prg1ds143kd5vqxkv1bxsp3b6mc0sx32wc702581fl995isrssm"; depends=[BiocGenerics doParallel doRNG EnvStats ExtDist foreach GenomicRanges ggplot2 IRanges matrixStats reshape2 S4Vectors]; }; - ramwas = derive2 { name="ramwas"; version="1.18.0"; sha256="164gcl1qk0rhi6acmx0rmmnxp8b6f76b2fr6w1mq5n65vk74ba72"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; - randPack = derive2 { name="randPack"; version="1.40.0"; sha256="1r3vcbjsrlsyl6j4mxiwj20j9lz7frzmq7mp0qj2jgf4xb0ifkw3"; depends=[Biobase]; }; - randRotation = derive2 { name="randRotation"; version="1.6.0"; sha256="17ldp80p2ch15sj3l66p4p5vdzh5l9xixrzp204crk54fjwwykrq"; depends=[Rdpack]; }; - rawrr = derive2 { name="rawrr"; version="1.2.0"; sha256="096pqk7njbhvrms9f6m2cyb88rc5mji7aadwvql3ir7bxx0zd2rp"; depends=[]; }; - rbsurv = derive2 { name="rbsurv"; version="2.52.0"; sha256="0arsfcdfk6b5llblw85dl5q7hj3cpwiybkavmav0175hmn34svcb"; depends=[Biobase survival]; }; - rcellminer = derive2 { name="rcellminer"; version="2.16.0"; sha256="0rlkm4pnwkrbj8jqqp7zyc19slsly6pmfzxm6v2bg43nhirmh658"; depends=[Biobase ggplot2 gplots rcellminerData shiny stringr]; }; - rebook = derive2 { name="rebook"; version="1.4.0"; sha256="1mfshchsr5my1z91q0rg31g8dk1izxjrz6ffq8iiq9w1fwgjzfkx"; depends=[BiocStyle CodeDepends dir_expiry filelock knitr rmarkdown]; }; - receptLoss = derive2 { name="receptLoss"; version="1.6.0"; sha256="19spz99d6d3ba7fnkmkkqb5nphn39hjq9gmyv7zlsvc8rgxz19k1"; depends=[dplyr ggplot2 magrittr SummarizedExperiment tidyr]; }; - reconsi = derive2 { name="reconsi"; version="1.6.0"; sha256="0djiq9l70wvicbqia14n1bbd9c7ykvsyrp0r2arw2b2pqh8281fh"; depends=[ggplot2 KernSmooth matrixStats phyloseq reshape2]; }; - recount = derive2 { name="recount"; version="1.20.0"; sha256="1maa0fi6dqkcsjlbm52gl0r37qcv951xrc6m4rc6fvp6cb83x68p"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; - recount3 = derive2 { name="recount3"; version="1.4.0"; sha256="0ciaab6q0pix7zhz7948b8w3qki8dfy9lpa0wffhqjr7fvfh2km2"; depends=[BiocFileCache data_table GenomicRanges Matrix R_utils RCurl rtracklayer S4Vectors sessioninfo SummarizedExperiment]; }; - recountmethylation = derive2 { name="recountmethylation"; version="1.4.5"; sha256="1pmrdjiz57ig4rgbn0kkkpls26pfjc4hmx6cpczywqipdyrv6aha"; depends=[BiocFileCache HDF5Array IlluminaHumanMethylation450kmanifest minfi R_utils RCurl rhdf5 S4Vectors]; }; - recoup = derive2 { name="recoup"; version="1.22.0"; sha256="00qxkjjb4bx6vak50jjpl2l9y7myri9x7m17h01j2v2cncg48s55"; depends=[BiocGenerics biomaRt Biostrings circlize ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 httr IRanges Rsamtools RSQLite rtracklayer S4Vectors stringr]; }; - regionReport = derive2 { name="regionReport"; version="1.28.1"; sha256="03d7nbfsk55mrlhzzr81mx3ndswkfj7fajyh1yz4jakjdclvzlxm"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; - regioneR = derive2 { name="regioneR"; version="1.26.1"; sha256="0k500fdmv5l0v7b9pj73bjk3h9k261mfqi6vl52khlw0fafn9b6p"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; - regsplice = derive2 { name="regsplice"; version="1.20.0"; sha256="1vm1vvi5gfw5ssyi0qng3jmanvyl2mx08w9bi5990pj0j6ycc70y"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; - regutools = derive2 { name="regutools"; version="1.6.0"; sha256="03gjlpn1pk2xkcbg4i1az505nq2gi6ajplq3asbg1fl9p2dbw8kh"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings DBI GenomicRanges Gviz IRanges RCy3 RSQLite S4Vectors]; }; - restfulSE = derive2 { name="restfulSE"; version="1.16.0"; sha256="118zmj9jhgblkgi1arwndrigc1gl37q6gydhw3xfdiml4lp2zags"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; - rexposome = derive2 { name="rexposome"; version="1.16.0"; sha256="05p77f6w9qq9k3yqxm5xlmlir5pqinb9h8adn1xjfh01d9pagsmc"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; }; - rfPred = derive2 { name="rfPred"; version="1.32.0"; sha256="12ppidpn8piw1w450nm35qxzfgyki4ihvp7cri8qk9gipvd3kq9z"; depends=[data_table GenomicRanges IRanges Rsamtools]; }; - rfaRm = derive2 { name="rfaRm"; version="1.6.0"; sha256="095p3nsax57m74j4dj7klpwkl8w2326c9yhc8s0c236kwyszz9rv"; depends=[Biostrings data_table httr IRanges magick rsvg rvest S4Vectors stringi xml2]; }; - rgsepd = derive2 { name="rgsepd"; version="1.26.0"; sha256="149065kmlzdzb9bjwm7x5y3l5j1y7qxzh8xz5liicz5rc4s7pb4i"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots hash org_Hs_eg_db SummarizedExperiment]; }; - rhdf5 = derive2 { name="rhdf5"; version="2.38.1"; sha256="1mlwp7bblhbpmd90sxj02zpq1q3fyg8v7ankyjb1y284xaymp02y"; depends=[rhdf5filters Rhdf5lib]; }; - rhdf5client = derive2 { name="rhdf5client"; version="1.16.0"; sha256="1pbgjhcqilr1kzx3a5m4113p6alcr30z1mdd33qqllcarnc0pf4n"; depends=[DelayedArray httr R6 rjson S4Vectors]; }; - rhdf5filters = derive2 { name="rhdf5filters"; version="1.6.0"; sha256="05b015pyp3g1crmm2d3ldsa7r5w0khmf87qbl4fv16r6pdggha78"; depends=[Rhdf5lib]; }; - riboSeqR = derive2 { name="riboSeqR"; version="1.28.0"; sha256="0nnhjvjl4c9yyfzjf8kcj4yky5cdimicp7lz008sczy19jq4vjhd"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; - ribor = derive2 { name="ribor"; version="1.6.0"; sha256="0g6z3rlmf3i6w3j0dldycz9k8jbg3d2ilv319270515j0lmmdngc"; depends=[dplyr ggplot2 hash rhdf5 rlang S4Vectors tidyr yaml]; }; - ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.6.1"; sha256="13wg6vrv69fjz0yqf4s4k1gr09zp3p7bpf6p03an8jah8b566s66"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; }; - rmelting = derive2 { name="rmelting"; version="1.10.0"; sha256="0jhlwnllp6zpi5prd9g51c1czi994jvky3f2v84p9hvgf91xf5f8"; depends=[Rdpack rJava]; }; - rmspc = derive2 { name="rmspc"; version="1.0.0"; sha256="1fszm50s87xafddspwl6cjg8gbp7mvd16w6ajz8fy0wlc4x5qia3"; depends=[BiocManager GenomicRanges processx rtracklayer stringr]; }; - rnaEditr = derive2 { name="rnaEditr"; version="1.4.0"; sha256="0hs3g7cr6c8gcvg1svv88r4h68364gfnqsmdjc6llwg2l1j36a8w"; depends=[BiocGenerics bumphunter corrplot GenomeInfoDb GenomicRanges IRanges logistf plyr S4Vectors survival]; }; - rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.24.0"; sha256="0asx51fxg9hc0brbqlxl0jyfyidh4fbwyclrvczzzqasf277f23w"; depends=[RColorBrewer]; }; - roar = derive2 { name="roar"; version="1.30.0"; sha256="0hqh4vsnxl2sn1bf6s6wxl2nskb40rhvrysdvb6dr60zkih3g347"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; - rols = derive2 { name="rols"; version="2.22.1"; sha256="1qam4aajg2sp8xii3rkarq5qjxdncy4mp6n5pinmm1iwynlsv217"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; - ropls = derive2 { name="ropls"; version="1.26.4"; sha256="19f3wd55860x959h5n7mrivyjdas5b3jmx74lf24xnx23g26f8rn"; depends=[Biobase MultiDataSet]; }; - rpx = derive2 { name="rpx"; version="2.2.2"; sha256="05qgfchg4pyff0xqrnycxzpan0w5ry1f9w30irhpjiglp7ggf882"; depends=[BiocFileCache curl jsonlite RCurl xml2]; }; - rqt = derive2 { name="rqt"; version="1.20.0"; sha256="0v2bm774y2ikwppp0w0ydqzak96ax7ga1d303vgll13xan50d391"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; - rqubic = derive2 { name="rqubic"; version="1.40.0"; sha256="0drzggalrvijqvq2x38r2l07rr2248rrw8lvhnfkszabb5qg4a71"; depends=[biclust Biobase BiocGenerics]; }; - rrvgo = derive2 { name="rrvgo"; version="1.6.0"; sha256="0sxybvvbgrxpddfr80cla6pmf8q3kiqrd9r9ca0hq8m4av9nv9cc"; depends=[AnnotationDbi ggplot2 ggrepel GO_db GOSemSim pheatmap shiny tm treemap wordcloud]; }; - rsbml = derive2 { name="rsbml"; version="2.52.0"; sha256="0mdyr637sgasc156cv8i2s2mpl1hdvilfwwkhvw7l95pl90gnsh2"; depends=[BiocGenerics graph]; }; - rsemmed = derive2 { name="rsemmed"; version="1.4.0"; sha256="00m9g6jrn21cs3wsrblimla3mwrd3y4y4drm4zl1x0xkz1f14r8f"; depends=[dplyr igraph magrittr stringr]; }; - rtracklayer = derive2 { name="rtracklayer"; version="1.54.0"; sha256="11bh9khra2qdmicppi6ya43kf8f1z13ak92vkl6nr5f20k54cphc"; depends=[BiocGenerics BiocIO Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl restfulr Rsamtools S4Vectors XML XVector zlibbioc]; }; - runibic = derive2 { name="runibic"; version="1.16.0"; sha256="0faqxqqgk0x7w87ck7xpjs1ppzd0g2hnxpssf55jq6qq9n4kvvi5"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; - sRACIPE = derive2 { name="sRACIPE"; version="1.10.0"; sha256="0mqg5f7l299dqc2y2fww21i76lb9685wckrcvjaxg80qsgc1s3r1"; depends=[BiocGenerics ggplot2 gplots gridExtra htmlwidgets MASS RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment umap visNetwork]; }; - sSeq = derive2 { name="sSeq"; version="1.32.0"; sha256="0b2f66qh9ysdgmvzma62806scmpwz2qblbdy89pqfbyzkqprg9zk"; depends=[caTools RColorBrewer]; }; - safe = derive2 { name="safe"; version="3.34.0"; sha256="139kaqd6c8sblpki63ncamx8n9dx1n660w7jzik8b6khgwz1jbj6"; depends=[AnnotationDbi Biobase SparseM]; }; - sagenhaft = derive2 { name="sagenhaft"; version="1.64.0"; sha256="110xg6kagap9795saxmh1dl77r4c2gzmk49rvqjlwqvbifnn4mvw"; depends=[SparseM]; }; - sampleClassifier = derive2 { name="sampleClassifier"; version="1.18.0"; sha256="1plsyjjbjrjq1mydv19lsv0alq98vr2132c3m9j0w4akvs7zcv6q"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; - sangeranalyseR = derive2 { name="sangeranalyseR"; version="1.4.0"; sha256="14bmz98rhpnkdqxkq67qvzkyld1a56h3y8kvjnhz5hzw8q1aihyd"; depends=[ape BiocStyle Biostrings data_table DECIPHER DT excelR ggdendro gridExtra knitr logger openxlsx phangorn plotly reshape2 rmarkdown sangerseqR seqinr shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr zeallot]; }; - sangerseqR = derive2 { name="sangerseqR"; version="1.30.1"; sha256="0anrwj63s0rd9dz6iiq6mvzp1jv5zqadjwrhc1cypvz57zf8ja02"; depends=[Biostrings shiny]; }; - sarks = derive2 { name="sarks"; version="1.6.0"; sha256="026px0b7cbfvf7zqcm2p1y00hna1wgpyfr4bkirwrbmskb7f32lp"; depends=[binom Biostrings cluster IRanges rJava]; }; - satuRn = derive2 { name="satuRn"; version="1.2.0"; sha256="1i2prsjxf6h0ynkcx4g1sj0mpb3v9rm6hwb9ppha2p86ffqxvrjn"; depends=[BiocParallel boot ggplot2 limma locfdr Matrix pbapply SummarizedExperiment]; }; - savR = derive2 { name="savR"; version="1.32.0"; sha256="0dwl94j5dm5ngn8lyyc4bd9ihd1nqincvq26najjn6lw0x55ciky"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; - scAlign = derive2 { name="scAlign"; version="1.8.0"; sha256="10bq2jalmyhw3f2vg1sjrlg5czap9w453aga68vgxbp3j04342sp"; depends=[FNN ggplot2 irlba purrr Rtsne Seurat SingleCellExperiment tensorflow]; }; - scAnnotatR = derive2 { name="scAnnotatR"; version="1.0.0"; sha256="08jq04ckjw8a5y753almc5bl8vnn4j6qp2zb7bb9w3ql3ddy7b21"; depends=[AnnotationHub ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; }; - scBFA = derive2 { name="scBFA"; version="1.8.0"; sha256="0fq7c9gd4ybcw9d3gw21hrnw2r94mamiimn2d50c23wdk31rsgy8"; depends=[copula DESeq2 ggplot2 MASS Matrix Seurat SingleCellExperiment SummarizedExperiment zinbwave]; }; - scCB2 = derive2 { name="scCB2"; version="1.4.0"; sha256="1pxfs9k4lfk3bfy9b6hls5dqrhbgc6z9j0ndyw67zhzgzpj333r0"; depends=[doParallel DropletUtils edgeR foreach iterators Matrix rhdf5 Seurat SingleCellExperiment SummarizedExperiment]; }; - scClassifR = derive2 { name="scClassifR"; version="1.2.0"; sha256="0p9l9q5ina0axrqvqn1y5wkfqi0nacxm3nm6ny34j53znv07b2zz"; depends=[ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; }; - scClassify = derive2 { name="scClassify"; version="1.6.0"; sha256="1aln1i29xj1p5gscxnfg0lcva2sr8pyf51r39bpagc83n5df4rw0"; depends=[BiocParallel Cepo cluster diptest ggplot2 ggraph hopach igraph limma Matrix mgcv minpack_lm mixtools proxy proxyC S4Vectors statmod]; }; - scDD = derive2 { name="scDD"; version="1.18.0"; sha256="0gjdjkpkm9zc9hzzb6r2mknl4zyg7s2lgqppmzzhgcnvlmgvm5b5"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; - scDataviz = derive2 { name="scDataviz"; version="1.4.0"; sha256="10q9xzaq27l1s4n8iavriv83y8sgblp3shkswr9cfks2siyxa27k"; depends=[corrplot flowCore ggplot2 ggrepel MASS matrixStats RColorBrewer reshape2 S4Vectors scales Seurat SingleCellExperiment umap]; }; - scDblFinder = derive2 { name="scDblFinder"; version="1.8.0"; sha256="0wzmmcsnjybgzbc5rn4i72n26j9n59dfy1zg8ij0q8p4276jplsd"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular bluster DelayedArray igraph MASS Matrix S4Vectors scater scran scuttle SingleCellExperiment SummarizedExperiment xgboost]; }; - scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.14.0"; sha256="1yqj75fxvsbdk32z7swwgb9lxx496sxgxv471yvbxzmjwxzigxj1"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; - scGPS = derive2 { name="scGPS"; version="1.8.0"; sha256="1k7g9lxp1n4ngm8z019p33vmb8y43hpwfvqdh514x1jh1ygcqbfj"; depends=[caret DESeq2 dplyr dynamicTreeCut fastcluster ggplot2 glmnet locfit Rcpp RcppArmadillo RcppParallel SingleCellExperiment SummarizedExperiment]; }; - scHOT = derive2 { name="scHOT"; version="1.6.0"; sha256="188qf2039g5jl6vbq1xarzx9n065nb5pqxmkh764q8cz60ic3s2s"; depends=[BiocParallel ggforce ggplot2 igraph IRanges Matrix reshape S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scMAGeCK = derive2 { name="scMAGeCK"; version="1.6.0"; sha256="1vx90l5d010dp6snasvaymlh16w5law19shdz0fhg3ngkc1v9jg0"; depends=[ggplot2 Seurat]; }; - scMerge = derive2 { name="scMerge"; version="1.10.0"; sha256="031wlfilcagl3mq14yqybz2z7r0l420p5v8f128f841lmhqclg55"; depends=[BiocParallel BiocSingular cluster DelayedArray DelayedMatrixStats distr igraph M3Drop pdist proxy ruv S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scPCA = derive2 { name="scPCA"; version="1.8.0"; sha256="1qgb03c446yv1zkzgiin05vlj7njlz3krvwj183s9y43d95mfny1"; depends=[assertthat BiocParallel cluster coop DelayedArray dplyr elasticnet kernlab Matrix MatrixGenerics matrixStats origami purrr Rdpack RSpectra ScaledMatrix sparsepca stringr tibble]; }; - scPipe = derive2 { name="scPipe"; version="1.16.1"; sha256="0anw36azfp4adsxdl3c58jmgvmvjv0vrcgp2bq90wnxky9xipmna"; depends=[AnnotationDbi BiocGenerics biomaRt dplyr GenomicRanges GGally ggplot2 glue hash magrittr MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib rlang robustbase rtracklayer S4Vectors scales scater SingleCellExperiment stringr SummarizedExperiment testthat zlibbioc]; }; - scReClassify = derive2 { name="scReClassify"; version="1.0.0"; sha256="0v2cz8h18p3q6a437db1z1ca85j7yrpz9sg7418q2hdv74wd645c"; depends=[e1071 randomForest SingleCellExperiment SummarizedExperiment]; }; - scRecover = derive2 { name="scRecover"; version="1.10.0"; sha256="0x8hlbjhf9jfin075sikc7gpl9qbpppcvhy3rd4cgy1nzq6dqwq1"; depends=[bbmle BiocParallel doParallel foreach gamlss kernlab MASS Matrix penalized preseqR pscl Rmagic rsvd SAVER]; }; - scRepertoire = derive2 { name="scRepertoire"; version="1.4.0"; sha256="17il73lv0pxbqaza21i0fg5zh2v3jf7n30nwngi1jqics4l5ahsl"; depends=[doParallel dplyr ggalluvial ggplot2 igraph plyr powerTCR reshape2 rlang SeuratObject stringdist stringr SummarizedExperiment vegan]; }; - scShapes = derive2 { name="scShapes"; version="1.0.0"; sha256="0bzbib3y454dmv6ifg65pynr7v07g29r391k8p8v97v53jzdjd38"; depends=[BiocParallel dgof emdbook magrittr MASS Matrix pscl VGAM]; }; - scTGIF = derive2 { name="scTGIF"; version="1.8.0"; sha256="0nsi00rbf9qmzyqkvgr4ga4ci4cy558hh4spaab49njs8vz9svvc"; depends=[Biobase BiocStyle ggplot2 GSEABase igraph knitr msigdbr nnTensor plotly RColorBrewer Rcpp rmarkdown S4Vectors scales schex SingleCellExperiment SummarizedExperiment tagcloud tibble]; }; - scTHI = derive2 { name="scTHI"; version="1.6.0"; sha256="0szqnwh3z45dq33iyiv7mnh6hbc561b88i0hvxffjfnfk99i34zl"; depends=[BiocParallel Rtsne]; }; - scTensor = derive2 { name="scTensor"; version="2.4.1"; sha256="0s61f0ahg2l7nv27dsxn9xszvzymsg9779nqq7a4jixa6fr0jns9"; depends=[abind AnnotationDbi AnnotationHub BiocManager BiocStyle Category ccTensor checkmate crayon DOSE ggplot2 GOstats heatmaply igraph knitr MeSHDbi meshr nnTensor outliers plotly plotrix reactome_db ReactomePA rmarkdown RSQLite rTensor S4Vectors schex SingleCellExperiment SummarizedExperiment tagcloud visNetwork]; }; - scTreeViz = derive2 { name="scTreeViz"; version="1.0.0"; sha256="0m2g4x1gpwh4y4hm708a4nrwqsx9isy1pn84327yzk9f4yn7jmkg"; depends=[clustree data_table digest epivizr epivizrData epivizrServer ggplot2 ggraph httr igraph Matrix Rtsne S4Vectors scater scran Seurat SingleCellExperiment SummarizedExperiment sys]; }; - scanMiR = derive2 { name="scanMiR"; version="1.0.0"; sha256="1yk3l04w76sracwra8r6wam8j45h5hlhgy638wsmnhsnbnc8d923"; depends=[BiocParallel Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges S4Vectors seqLogo stringi]; }; - scanMiRApp = derive2 { name="scanMiRApp"; version="1.0.0"; sha256="1vdsx4ryjr7ifh9zy9jh05z5rg8b7ffvknqniwqsnlryyskm978h"; depends=[AnnotationDbi AnnotationFilter AnnotationHub BiocParallel Biostrings data_table digest DT ensembldb fst GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 htmlwidgets IRanges Matrix plotly rintrojs rtracklayer S4Vectors scanMiR scanMiRData shiny shinycssloaders shinydashboard waiter]; }; - scater = derive2 { name="scater"; version="1.22.0"; sha256="0k4i9pwmwxcr5a40ljl27wriccwn5vc52xy48yjjh8ppl5dbggdg"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats ggbeeswarm ggplot2 ggrepel gridExtra Matrix RColorBrewer rlang Rtsne S4Vectors scuttle SingleCellExperiment SummarizedExperiment viridis]; }; - scatterHatch = derive2 { name="scatterHatch"; version="1.0.0"; sha256="1ldrfkk0m00xkkg6zm6cd3i3avpnpfxa6mpjrgajwxh3xyip8lh5"; depends=[ggplot2 plyr spatstat_geom]; }; - scde = derive2 { name="scde"; version="2.22.0"; sha256="1hqpx7j5j36h7fsckdc76lfig9afcm4q7k0cpp0zzivvsi6kvc2b"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; - scds = derive2 { name="scds"; version="1.10.0"; sha256="1n7nakndvkk26wpriqfysb89npj539xpqnp6j3szxcpd0r6dd37n"; depends=[dplyr Matrix pROC S4Vectors SingleCellExperiment SummarizedExperiment xgboost]; }; - schex = derive2 { name="schex"; version="1.8.0"; sha256="18w36xc11myq2yh086530ga9f841nx7lqaafrh0zyzc6jvi0flql"; depends=[cluster concaveman dplyr entropy ggforce ggplot2 hexbin scales Seurat shiny SingleCellExperiment]; }; - scmap = derive2 { name="scmap"; version="1.16.0"; sha256="0kdkp4ys1hq1y1dh539qymji38cfs44kpkhm4wc5na3wgxxq52y8"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scmeth = derive2 { name="scmeth"; version="1.14.0"; sha256="0j6kyapwivpri92hssy8mk7dnzc19sd9chipkhdwbcmdxzpdx4hw"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; - scone = derive2 { name="scone"; version="1.18.0"; sha256="1fqlwg195rzpwh35cj941vhmj2plzpn253skig6glr0z2sirr9r1"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma MatrixGenerics matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SingleCellExperiment SummarizedExperiment]; }; - scoreInvHap = derive2 { name="scoreInvHap"; version="1.16.0"; sha256="1y8b8yw0d0b65pka31lfcbdr5knvmihx2shcww76613j3vkk1m77"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; - scp = derive2 { name="scp"; version="1.4.0"; sha256="1jjczmyihdbvrhv7n4qv58jm1wjw09axk6mixr2yd9fkhxkwc2fy"; depends=[dplyr magrittr matrixStats MsCoreUtils MultiAssayExperiment QFeatures rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; - scran = derive2 { name="scran"; version="1.22.1"; sha256="06lcxya6rpa8dv0il7m7fwyx0ci1y1jn16ff5lmvzf2mnr6q7lic"; depends=[beachmat BH BiocGenerics BiocParallel BiocSingular bluster DelayedArray DelayedMatrixStats dqrng edgeR igraph limma Matrix metapod Rcpp S4Vectors scuttle SingleCellExperiment statmod SummarizedExperiment]; }; - scruff = derive2 { name="scruff"; version="1.12.1"; sha256="0fikkh5pmsbgdgddn4mxmz4liapl7gm2fvs9wlfjvnx457423ydz"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr Rsamtools Rsubread rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; - scry = derive2 { name="scry"; version="1.6.0"; sha256="1qp40k5l6splpj4gqgsgx07ys63j8gixdycsjzkgmd13l7awhdf2"; depends=[BiocSingular DelayedArray glmpca HDF5Array Matrix SingleCellExperiment SummarizedExperiment]; }; - scuttle = derive2 { name="scuttle"; version="1.4.0"; sha256="1dbdb6yc6wk01dljy1vy6f0lf44crc5rxxnc4bhjk8i4iljz8467"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats GenomicRanges Matrix Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; - sechm = derive2 { name="sechm"; version="1.2.0"; sha256="0b6izkd276d57vxfi7iip26zkvm7dyd1sml9bh5gcfr1k50ylfiv"; depends=[circlize ComplexHeatmap randomcoloR S4Vectors seriation SummarizedExperiment]; }; - segmentSeq = derive2 { name="segmentSeq"; version="2.28.0"; sha256="1lfi8z39d08w8haga622ha6cqfcs6k80v1xg406l0cxz09qmwss2"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; - segmenter = derive2 { name="segmenter"; version="1.0.0"; sha256="053s5qkqir3rxjxpi11q9vxxrrp5cv7awn2i2ns8p21zsqzvfis4"; depends=[bamsignals ChIPseeker chromhmmData ComplexHeatmap GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; - selectKSigs = derive2 { name="selectKSigs"; version="1.6.0"; sha256="03c1dm883vdm5cq4v0dp7kbglxvjljxls6hf7rqqaq7xbw6c9l33"; depends=[gtools HiLDA magrittr Rcpp]; }; - semisup = derive2 { name="semisup"; version="1.18.0"; sha256="0zjpcw04mrxg2c31cwbfiv1kymq9zpfmwwffjhq046fiikvkda51"; depends=[VGAM]; }; - seq2pathway = derive2 { name="seq2pathway"; version="1.26.0"; sha256="0r780ralqw02871ww4prm73g18wh6nxs0g0cck135kcmp1a9nbwr"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; - seqCAT = derive2 { name="seqCAT"; version="1.16.1"; sha256="011rfyb5jgcfc2g92v9d19n75wsziga16s3iqg78zb5vp3vcwnlk"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges rlang rtracklayer S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; - seqCNA = derive2 { name="seqCNA"; version="1.40.0"; sha256="1v8j1mm40r67ab5x38jzynrfmmlpfkwv7afrsr3zwcmxr3h2c7i3"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; - seqLogo = derive2 { name="seqLogo"; version="1.60.0"; sha256="013hwj2lp29nqa8mkvm25aliarg0k725crg4cpsbj0iiskyrs6rl"; depends=[]; }; - seqPattern = derive2 { name="seqPattern"; version="1.26.0"; sha256="1mik575qaxw9h9qyjn971207pfgbc8p1mx60jrb20jbrrihgg2na"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; - seqTools = derive2 { name="seqTools"; version="1.28.0"; sha256="1m8pxyq11bq4wz3w4n4ls5wf9ws2b7pazazv1d6icrrr9z3278ma"; depends=[zlibbioc]; }; - seqbias = derive2 { name="seqbias"; version="1.42.0"; sha256="1q608c1madij8l52ljl3w52vi3cssr6ikny84yj6n8s7yvpx5jpr"; depends=[Biostrings GenomicRanges Rhtslib]; }; - seqcombo = derive2 { name="seqcombo"; version="1.16.1"; sha256="18iixqj84b4ldg8q0dj8fivxrgqzba6qnj9zin9dhsyfqg5wz6z0"; depends=[Biostrings cowplot dplyr ggplot2 igraph magrittr yulab_utils]; }; - seqsetvis = derive2 { name="seqsetvis"; version="1.14.2"; sha256="1l3fxskqwh5am1zxyz3l95whlw8wdylagx9n7fvlrfs4lfqbzphr"; depends=[data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors UpSetR]; }; - sesame = derive2 { name="sesame"; version="1.12.9"; sha256="0sqmykp5nc87ixhf330bhz0vh28si3c6kfvr8rrfhhf3jvy34a2k"; depends=[BiocParallel DNAcopy e1071 fgsea GenomicRanges ggplot2 ggrepel illuminaio IRanges KernSmooth MASS matrixStats preprocessCore randomForest reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; - sevenC = derive2 { name="sevenC"; version="1.14.0"; sha256="06m6479ps7896zaks8jnnak8l7c6abbsdx56k3l5ir78681g4bq1"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; - sevenbridges = derive2 { name="sevenbridges"; version="1.24.0"; sha256="03p7p1mwa3m8zvyz5761xmqhch6cfgy42cv0swwgj0n9jr83sc23"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; - shinyMethyl = derive2 { name="shinyMethyl"; version="1.30.0"; sha256="0ihs4l4r46qyv7j8a2g590x86y0dwki2gzllwq2a31il34jrbgq5"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; - shinyepico = derive2 { name="shinyepico"; version="1.2.0"; sha256="1bfzvg46j52lmlf3jjbnd14bn6wmmrksh2adhgh436ywqdrnwygd"; depends=[data_table doParallel dplyr DT foreach GenomicRanges ggplot2 gplots heatmaply limma minfi plotly reshape2 rlang rmarkdown rtracklayer shiny shinycssloaders shinyjs shinythemes shinyWidgets statmod tidyr zip]; }; - sigFeature = derive2 { name="sigFeature"; version="1.12.0"; sha256="0xrg1pxygqsbsh9hgnyhakasds9wvj0rix3a7zhhgrix016gy2kg"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; - sigPathway = derive2 { name="sigPathway"; version="1.62.0"; sha256="1c46m1gbgiygcj8m65h8iwzk3fkp6nynd6rk1f5qdh7kw5ap28f9"; depends=[]; }; - siggenes = derive2 { name="siggenes"; version="1.68.0"; sha256="1fymp5ci1nwkk5yfj7hli464xqvvlvzf2a5j0w3qkxly9hrymix9"; depends=[Biobase multtest scrime]; }; - sights = derive2 { name="sights"; version="1.20.0"; sha256="03xfiwbxbj4nbbdd8cwgqb84gsp0zrlqz4qgz22rhjfm1gxg38j9"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; - signatureSearch = derive2 { name="signatureSearch"; version="1.8.2"; sha256="0011xg9jnb3rpa3ni8ki62p5hm8v16cv40fmrw3ngzsfc6smj35h"; depends=[AnnotationDbi BiocGenerics BiocParallel clusterProfiler data_table DelayedArray DOSE dplyr ExperimentHub fastmatch fgsea ggplot2 GSEABase HDF5Array magrittr Matrix qvalue Rcpp reactome_db readr reshape2 rhdf5 RSQLite scales SummarizedExperiment visNetwork]; }; - signeR = derive2 { name="signeR"; version="1.20.0"; sha256="1wsh5ik046baq0bsdy5i8f6vf10x2xyxqkmixp2f81nk0cwxxq1y"; depends=[BiocGenerics Biostrings class GenomeInfoDb GenomicRanges IRanges nloptr NMF PMCMRplus Rcpp RcppArmadillo VariantAnnotation]; }; - sigsquared = derive2 { name="sigsquared"; version="1.26.0"; sha256="1l2p7psmaxff8b63mk59492dr4s0pmr2lnjp32gqs0a7g3s8ry9f"; depends=[Biobase survival]; }; - similaRpeak = derive2 { name="similaRpeak"; version="1.26.0"; sha256="19d4qfk2qx5jmrfyr929lfwfa9a4b1n65aiclqhfiz9nwh2i6zgf"; depends=[R6]; }; - simplifyEnrichment = derive2 { name="simplifyEnrichment"; version="1.4.0"; sha256="05d9yjd8s7q1q78qmnx5xfrz9ppswc2cpfmjj47d338w783lwk98"; depends=[AnnotationDbi BiocGenerics circlize clue cluster ComplexHeatmap digest GetoptLong GO_db GOSemSim Matrix org_Hs_eg_db proxyC slam tm]; }; - sincell = derive2 { name="sincell"; version="1.26.0"; sha256="0yc6a90pqvs9yrhd6vllbdakrq1vly500x2kv68yxk2lzj4magwp"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; - singleCellTK = derive2 { name="singleCellTK"; version="2.4.0"; sha256="1a3j012jgysfbrknv1pp1az0zsk48yj1sjcjjchakl6lm7anzvhz"; depends=[AnnotationDbi ape batchelor Biobase BiocParallel celda celldex circlize cluster colorspace colourpicker ComplexHeatmap cowplot data_table DelayedArray DelayedMatrixStats DESeq2 dplyr DropletUtils DT enrichR ExperimentHub fields fishpond ggplot2 ggplotify ggrepel ggtree gridExtra GSEABase GSVA GSVAdata igraph KernSmooth limma magrittr MAST Matrix matrixStats metap msigdbr multtest plotly R_utils RColorBrewer reshape2 reticulate rlang rmarkdown ROCR Rtsne S4Vectors scater scDblFinder scds scMerge scran scRNAseq Seurat shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SingleR SummarizedExperiment sva TENxPBMCData tibble tximport VAM withr yaml zinbwave]; }; - singscore = derive2 { name="singscore"; version="1.14.0"; sha256="1mmp0sgx684d1yxpminllzb6pnl66jlrqhxifvv7g5iivqqsrm2p"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape reshape2 S4Vectors SummarizedExperiment tidyr]; }; - sitadela = derive2 { name="sitadela"; version="1.2.0"; sha256="14r07kxj0fy1i2zmm1v8i7cwx5ff14xlmg5cdrjyzi6zws09vdp8"; depends=[Biobase BiocGenerics biomaRt Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; }; - sitePath = derive2 { name="sitePath"; version="1.10.2"; sha256="0xwv469sb0zyhzn62ps4hfbsh2vivghlflhm16l9fkaix1mgmd4j"; depends=[ape aplot ggplot2 ggrepel ggtree gridExtra RColorBrewer Rcpp seqinr tidytree]; }; - sizepower = derive2 { name="sizepower"; version="1.64.0"; sha256="1jcv4hy4gq5javqvdla122d36m3gfpwwa5qv5d21fh2s90ycm3rm"; depends=[]; }; - skewr = derive2 { name="skewr"; version="1.26.0"; sha256="10mfb1yklns9zhy3p9gxxdk3gihlszynilb8b20gb7522yrd124x"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; - slalom = derive2 { name="slalom"; version="1.16.0"; sha256="130qqbm63iwymwk0lwlp8sns62853l1fabij7iy30ax8hgi681kc"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; - slingshot = derive2 { name="slingshot"; version="2.2.0"; sha256="081kp9b0lpw2xq9xvd2kykqqrqcj322mp7xa44xc3kf0nzsivqfa"; depends=[igraph matrixStats princurve S4Vectors SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; - slinky = derive2 { name="slinky"; version="1.12.0"; sha256="05ywydvyz3jnzbhabhz1sd61hpy9nb22512zpbi48mv5wic1sv3v"; depends=[curl dplyr foreach httr jsonlite readr rhdf5 SummarizedExperiment tidyr]; }; - snapCGH = derive2 { name="snapCGH"; version="1.64.0"; sha256="0awvdv4a8ranhvk2an28lnpf8ygsxczg8bgx75fsa4xprp2ij31r"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; - snapcount = derive2 { name="snapcount"; version="1.6.0"; sha256="0maq6s85h1cx03xp9a89gsq8hd9mgx36q384x0hgmsd1lgkm942d"; depends=[assertthat data_table GenomicRanges httr IRanges jsonlite magrittr Matrix purrr R6 rlang stringr SummarizedExperiment]; }; - snifter = derive2 { name="snifter"; version="1.4.0"; sha256="05fxd9d4qyn6qhnh4kwchr5dwb5d5hzy3yrkxszbnps1mnqfhyz9"; depends=[assertthat basilisk irlba reticulate]; }; - snm = derive2 { name="snm"; version="1.42.0"; sha256="03bpbsm43pv54mwsklyyjg3g17yflnxcza9bnbkbbbr6aicwihnb"; depends=[corpcor lme4]; }; - snpStats = derive2 { name="snpStats"; version="1.44.0"; sha256="0ha34b5cg26940xihgky45adns1nflrgq2qjq77w4bncxpaacsqq"; depends=[BiocGenerics Matrix survival zlibbioc]; }; - soGGi = derive2 { name="soGGi"; version="1.26.0"; sha256="1g2lsi8nqpi2vm284jv1ab3i9k03kwqsy9zf51vfnpqq31lrdlki"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - sojourner = derive2 { name="sojourner"; version="1.8.0"; sha256="0ld1gh6vznmvd09xrza5xs93n3g0vf8zqymn58b23rilsrvm2cbc"; depends=[dplyr EBImage fitdistrplus ggplot2 gridExtra lattice MASS mclust minpack_lm mixtools mltools nls2 pixmap plyr R_matlab Rcpp reshape2 rlang sampSurf scales shiny shinyjs sp truncnorm]; }; - sparrow = derive2 { name="sparrow"; version="1.0.3"; sha256="0mlsbicas04l3c1bhvnqnprjnlqzd6h61k7n3j51bkahrds33nbf"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; }; - sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.18.0"; sha256="1rn8jv2b3fmyibgc6h91mhnl9nzqkds02pvj6vbq12pfvhhb021i"; depends=[MASS MCMCpack optparse tmvtnorm]; }; - sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.6.0"; sha256="0ifqj4a6mn4749sr62gq3dwd6mmbbzdx5mh5b5663vcgl1kw96x1"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; }; - sparsenetgls = derive2 { name="sparsenetgls"; version="1.12.0"; sha256="0g8vbzhzyccyi77x49c8idhwy357a2azywvllinjapgwiy88s02a"; depends=[glmnet huge MASS Matrix]; }; - spatialDE = derive2 { name="spatialDE"; version="1.0.0"; sha256="01dqrs8a23b0j5a0zk31g1ld5783dd6fsjiaj1vgc767mjwh0vsx"; depends=[basilisk checkmate ggplot2 ggrepel gridExtra Matrix reticulate S4Vectors scales SpatialExperiment SummarizedExperiment]; }; - spatialHeatmap = derive2 { name="spatialHeatmap"; version="2.0.0"; sha256="0a67dk5jvww8lrjqq8yxbqnm2lasjhypi1k16qa7gwd2x84phghf"; depends=[av BiocFileCache data_table DESeq2 distinct dynamicTreeCut edgeR flashClust genefilter ggdendro ggplot2 ggplotify gplots gridExtra grImport HDF5Array htmlwidgets igraph limma magick plotly rappdirs reshape2 rols rsvg S4Vectors shiny shinydashboard SummarizedExperiment UpSetR visNetwork WGCNA xml2 yaml]; }; - spatzie = derive2 { name="spatzie"; version="1.0.1"; sha256="08fk50y10pkpwq5cvlafs24kvzha9p6nk982vhjl0dbhlysa86vc"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicFeatures GenomicInteractions GenomicRanges ggplot2 IRanges matrixStats motifmatchr S4Vectors SummarizedExperiment TFBSTools]; }; - specL = derive2 { name="specL"; version="1.28.0"; sha256="1fsv1vi7wghrn6xgkdfsr5c53jv1kfpxygzpvnc8pa37l6jfzdfg"; depends=[DBI protViz RSQLite seqinr]; }; - spicyR = derive2 { name="spicyR"; version="1.6.0"; sha256="1a7nidfa0vq7qbs5j1yl429q1adic8p3pagrvw3362b59j36ryxx"; depends=[BiocGenerics BiocParallel concaveman data_table dplyr ggplot2 IRanges lme4 lmerTest mgcv pheatmap rlang S4Vectors scam spatstat_core spatstat_geom tidyr]; }; - spikeLI = derive2 { name="spikeLI"; version="2.54.0"; sha256="1ndxvamn2q6ad86dfql1qa7c87xfg8q3zk6f33ip458ikmx16h3f"; depends=[]; }; - spiky = derive2 { name="spiky"; version="1.0.0"; sha256="0r8n6icjkhwaq395ikcw64wgks89s84a97xc8lwgrb4lkmnlkgyj"; depends=[bamlss Biostrings BlandAltmanLeh BSgenome GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges Rsamtools S4Vectors scales]; }; - spkTools = derive2 { name="spkTools"; version="1.50.0"; sha256="1fbh8lfhl3j7dgx7my3ajjfvzfl0x5rm3m0hszm9dk7zvn6zl67x"; depends=[Biobase gtools RColorBrewer]; }; - splatter = derive2 { name="splatter"; version="1.18.2"; sha256="1azcn3fckqaz8kyqzlmb25fbncyyk9ai7d9gj9bq9xnqhjr5ni1a"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; - splineTimeR = derive2 { name="splineTimeR"; version="1.22.0"; sha256="0pbfflicb2zpiddslivyh9i2vly6h8jfbmpm38ljijzshmsvra6v"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; - splots = derive2 { name="splots"; version="1.60.0"; sha256="0ng1shqpjmgbfs4hlcfncq4ipl59a9xwv42h7zcc45hzm7013fq9"; depends=[RColorBrewer]; }; - spqn = derive2 { name="spqn"; version="1.6.0"; sha256="081b87w4gsrqp9ny9gqc85g4nm17kxrs2bagxgja280hf7ry2f08"; depends=[BiocGenerics ggplot2 ggridges matrixStats SummarizedExperiment]; }; - srnadiff = derive2 { name="srnadiff"; version="1.14.0"; sha256="075yvmdv4403za1cp0agcjq1lbnk3wa5b9cx2hjra1i26sgvvfxp"; depends=[baySeq BiocManager BiocParallel BiocStyle DESeq2 devtools edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; - ssPATHS = derive2 { name="ssPATHS"; version="1.8.0"; sha256="1xl6vj0h0mh7xxyw8gfyb02zq6mvdi7yy6ssi50p1aq9ynlvpzwn"; depends=[dml MESS ROCR SummarizedExperiment]; }; - sscore = derive2 { name="sscore"; version="1.66.0"; sha256="0gmq40iikz71wrw3kppr14xmjyb1fg2kxcsldwqs3nhmrbcsmpxq"; depends=[affy affyio]; }; - sscu = derive2 { name="sscu"; version="2.24.0"; sha256="0ffcb5z1rwa2jmvdq1k9mq356fxh13vjrxmd7jbyz22sia02q2n0"; depends=[BiocGenerics Biostrings seqinr]; }; - ssize = derive2 { name="ssize"; version="1.68.0"; sha256="1q0wgqxja6fpnf1awwq25dh891mlsrszb2lizwzbkw8nfj4zx4v8"; depends=[gdata xtable]; }; - ssrch = derive2 { name="ssrch"; version="1.10.0"; sha256="0mvi90gs74fzyy08bssy6x3skcwwxyixn7fg31h4fd2iii1rsf9i"; depends=[DT shiny]; }; - ssviz = derive2 { name="ssviz"; version="1.28.0"; sha256="1jhzvz9scacwxh4dlqv4x852aym5b6yjk3nam6hphinzpsjvjhjd"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; - staRank = derive2 { name="staRank"; version="1.36.0"; sha256="017z547lmj0sid27wdkw999i9b1dha20ql8dhi47s0yrivx2qzc8"; depends=[cellHTS2]; }; - stageR = derive2 { name="stageR"; version="1.16.0"; sha256="0vpx0v04hgkhzi0bm7ipnb9xr37n5wvnnr45lljgni8pwabfkf6y"; depends=[SummarizedExperiment]; }; - statTarget = derive2 { name="statTarget"; version="1.24.0"; sha256="07bz7sna144x6fwp0m5cqjrr5h1gic841pkv24dgxxkzq0arzcwm"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; - stepNorm = derive2 { name="stepNorm"; version="1.66.0"; sha256="1v5a5zcczd65kzmpkjhr793z74f1758mbql0izwavc609ai5a241"; depends=[marray MASS]; }; - strandCheckR = derive2 { name="strandCheckR"; version="1.12.0"; sha256="1j7h8psn90zdz78j2115gwpdikkvpcfbv8izpwazawgl59byb4w8"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 rmarkdown Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - struct = derive2 { name="struct"; version="1.6.0"; sha256="1vnszdh24f8hh2kcpxr9whbpbws3qnm0zldjg5pdvkfvnsq6fa00"; depends=[knitr ontologyIndex rols S4Vectors SummarizedExperiment]; }; - structToolbox = derive2 { name="structToolbox"; version="1.6.1"; sha256="1p39d2w0q1hi7jm6chm29pf68wp241hzr0p65hjfqdcq4bq39jkp"; depends=[ggplot2 ggthemes gridExtra scales sp struct]; }; - subSeq = derive2 { name="subSeq"; version="1.24.0"; sha256="1yyj74cff2zjl7i5ms44805jb65f1xbd0f9yh084n4f3qn0vp7jh"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; - supersigs = derive2 { name="supersigs"; version="1.2.0"; sha256="0g622ci7761nk8baxi3w4m9qfalv2l97irkrpjsglmqf3rnc1h47"; depends=[assertthat Biostrings caret dplyr rlang rsample SummarizedExperiment tidyr]; }; - supraHex = derive2 { name="supraHex"; version="1.32.0"; sha256="00z4dir261xr5v2ajs8vifhyy35agcqjph9jlwg8q9f3s2n89c6x"; depends=[ape dplyr hexbin igraph magrittr MASS purrr readr stringr tibble tidyr]; }; - surfaltr = derive2 { name="surfaltr"; version="1.0.0"; sha256="072hm8mcv0cyjmpss8jq84g4igd8m0xvqjj4n8ys9i54f7ar66zh"; depends=[biomaRt Biostrings dplyr ggplot2 httr msa protr readr seqinr stringr testthat xml2]; }; - survcomp = derive2 { name="survcomp"; version="1.44.1"; sha256="1if6f07110c42ygsp2lhsswfxl0mvcfkl60qxrym0s85fksymi5q"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; - survtype = derive2 { name="survtype"; version="1.10.0"; sha256="0m4y3sc4d74590m78sl61xzl2lg5ik2jxlasnkcg9gv4cqpi4nl5"; depends=[clustvarsel pheatmap SummarizedExperiment survival survminer]; }; - sva = derive2 { name="sva"; version="3.42.0"; sha256="0clzid9di2qfgc5bvnqx312k3inj1lc599ckqkllvr894wxb7mdj"; depends=[BiocParallel edgeR genefilter limma matrixStats mgcv]; }; - svaNUMT = derive2 { name="svaNUMT"; version="1.0.0"; sha256="1y090djhxmpb8rb74zy4sjbczh3cnfjx43g59f3as0n2h2knba0g"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; - svaRetro = derive2 { name="svaRetro"; version="1.0.0"; sha256="0ah4qg0cy71sg0g7wh40lslj9xrbk53l1kc63mrg9ixwysiqrq8c"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; - swfdr = derive2 { name="swfdr"; version="1.20.0"; sha256="1nhqvifn9ghfvxgcf0qzm5q3i1ar75ghly88sr6pwn8401rbbm6n"; depends=[]; }; - switchBox = derive2 { name="switchBox"; version="1.30.0"; sha256="09z9wi8yzjq49rjmn707a1kvf7c203lbxcnc7znwhy7lv51svj67"; depends=[gplots pROC]; }; - switchde = derive2 { name="switchde"; version="1.20.0"; sha256="1n815zwj5znddgc3pz87089q8bvb14n2g61zfang8d8pna4zbf7v"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; - synapsis = derive2 { name="synapsis"; version="1.0.0"; sha256="1kqapzcd2zvmyaqshcrfxkkaf6k7kwaqnd6g4dhnjcf2wqnf6fs5"; depends=[EBImage]; }; - synergyfinder = derive2 { name="synergyfinder"; version="3.2.10"; sha256="0nc2c8y3msffl8ghp60wmvwnjahxg9w5xfmrpx36r7z81ggdqs9d"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; - synlet = derive2 { name="synlet"; version="1.24.0"; sha256="1xidxlkppap0x8h9iiyl78lcx50ckpg46n8pl49vz4435vd6grp2"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; - systemPipeR = derive2 { name="systemPipeR"; version="2.0.6"; sha256="0l9m74cz5qf1hcr6f2jng7kd9vc3ppkpjgxh7gla8x0y329q0znz"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; - systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.4.0"; sha256="0h803ijajf32igfknkaivlzrc323apzligq1j8ghpf02q7f5q830"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; }; - systemPipeTools = derive2 { name="systemPipeTools"; version="1.2.0"; sha256="1n53nwb00zmrhb8h1fq4lqzdd87f74c4l1z24sid4xrjssylrnwr"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; }; - tLOH = derive2 { name="tLOH"; version="1.2.0"; sha256="0k3lqlivxbv4gaipiskhpl34rjrmrn1x4243awxnvbhhvaqq5r50"; depends=[data_table dplyr GenomicRanges ggplot2 MatrixGenerics purrr scales VariantAnnotation]; }; - tRNA = derive2 { name="tRNA"; version="1.12.0"; sha256="1sgmj7vcghssdxirxh1p059b8827gdckd9hplibs0a0chq21glcr"; depends=[BiocGenerics Biostrings GenomicRanges ggplot2 IRanges Modstrings S4Vectors scales stringr Structstrings XVector]; }; - tRNAdbImport = derive2 { name="tRNAdbImport"; version="1.12.0"; sha256="1xkbdyf5c7fk0hbp9jql33mh4dpffvyjm8binh2h9g109jbyshv7"; depends=[BiocGenerics Biostrings GenomicRanges httr IRanges Modstrings S4Vectors stringr Structstrings tRNA xml2]; }; - tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.14.0"; sha256="1qfrbqpv0wk3hbvdwy3fvgns2sadrldij80h060miwbp6ilrf7ji"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors stringr Structstrings tRNA XVector]; }; - tRanslatome = derive2 { name="tRanslatome"; version="1.32.0"; sha256="1ybq23hjad913dq291i2w198xkgflgzkhqh9r5azak3d6pbhnyzf"; depends=[anota Biobase DESeq2 edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd sigPathway topGO]; }; - tanggle = derive2 { name="tanggle"; version="1.0.0"; sha256="0p1gqm28syrs0jd339iy48bcg3zsrzvcnydj3a36hvf2lihahiq1"; depends=[ape ggplot2 ggtree phangorn]; }; - target = derive2 { name="target"; version="1.8.0"; sha256="1qrrvssxv06i4cchlz8kc3xm7iyj4d8958161qda84ryh49zf6pz"; depends=[BiocGenerics GenomicRanges IRanges matrixStats shiny]; }; - tenXplore = derive2 { name="tenXplore"; version="1.16.0"; sha256="10wzragd76zvp2yjsxvsv08g1ss1dhfj38k8wcybjls4pssn5m7c"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; - ternarynet = derive2 { name="ternarynet"; version="1.38.0"; sha256="1zj5q5g2dhq4jfr3rgi448hlgvdnbb74caylq7n5k771xm10dmn9"; depends=[BiocParallel igraph]; }; - tidySingleCellExperiment = derive2 { name="tidySingleCellExperiment"; version="1.4.0"; sha256="06552iankswvvnwg8ba330iqg0xg8n55fxsgl2llw9xscn52lswb"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr tidyselect]; }; - tidySummarizedExperiment = derive2 { name="tidySummarizedExperiment"; version="1.4.1"; sha256="0q54bpb8xzw3ln4sxvpznkhx40lprcmnm62g0211xk8vmm6pxmf3"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect]; }; - tidybulk = derive2 { name="tidybulk"; version="1.6.1"; sha256="0fbipc79csw4g359imj4j674j49960kxgcf20ca6gki4996ng0l2"; depends=[dplyr GenomicRanges lifecycle magrittr preprocessCore purrr readr rlang scales stringi stringr SummarizedExperiment tibble tidyr tidyselect]; }; - tigre = derive2 { name="tigre"; version="1.48.0"; sha256="02d5khnl5klvg4r4h3nds4cs7713d4fp4lysxx34wfr62ps363az"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; - tilingArray = derive2 { name="tilingArray"; version="1.72.0"; sha256="0d7f1g162js5arq989qihs1nylf6q7fgbjy1gwy57ms8aswfna1r"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; - timeOmics = derive2 { name="timeOmics"; version="1.6.0"; sha256="0z7p8bgcxz56wg7cya5zz9vq9ag3lj19jy4k7l8b8gh1j9cl7ph2"; depends=[dplyr ggplot2 ggrepel lmtest magrittr mixOmics plyr propr purrr stringr tibble tidyr]; }; - timecourse = derive2 { name="timecourse"; version="1.66.0"; sha256="0kk47zcgjxsgx9y456yx5afx2wpy8r5flw8bn96z7jfp8nn68nk8"; depends=[Biobase limma marray MASS]; }; - timescape = derive2 { name="timescape"; version="1.18.0"; sha256="0v3j0jybyin5i52mp2j3kvqiq3l57gjggq234g3ylywhskndrz9y"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; - tkWidgets = derive2 { name="tkWidgets"; version="1.72.0"; sha256="1wlvrx998hqnfrkyvyrn775ni91pvc3adxp8hpv61qrh6aih9yvf"; depends=[DynDoc widgetTools]; }; - tofsims = derive2 { name="tofsims"; version="1.22.0"; sha256="0da4843wbcr821yp8z3z4vd81qpm2lblckgd01fm89lmwj393z65"; depends=[ALS alsace KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; }; - tomoda = derive2 { name="tomoda"; version="1.4.0"; sha256="1fy2vzahz8m3syx4rimdnkhifnjbl504abq3h49vslng0pr7166d"; depends=[ggplot2 ggrepel RColorBrewer reshape2 Rtsne SummarizedExperiment umap]; }; - topGO = derive2 { name="topGO"; version="2.46.0"; sha256="01vykf8bzwm2k7cfj09r6il6qaycjy10wpaxbn13f21p66r5nlm2"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; - topconfects = derive2 { name="topconfects"; version="1.10.0"; sha256="15l7fx8vajxw8sgprihy0k1gwkp63af9jav6w1hyjij23brlmd1a"; depends=[assertthat ggplot2]; }; - topdownr = derive2 { name="topdownr"; version="1.16.0"; sha256="1slnvqj0grdkif5mjyw2zg6fddnr45gz64b1ar2h6pb9blhsyi0m"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; }; - trackViewer = derive2 { name="trackViewer"; version="1.30.0"; sha256="0klfwndai55myrv7j6bp85bp9wg57z1rs2xxcrh5a11y1lx1x4ph"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rcpp Rgraphviz rhdf5 Rsamtools rtracklayer S4Vectors scales]; }; - tracktables = derive2 { name="tracktables"; version="1.28.0"; sha256="1ymz4gz73wbi3ansbf346fnp51nxq6v68ax0mp7y5vqf51jsvwwx"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; - tradeSeq = derive2 { name="tradeSeq"; version="1.8.0"; sha256="1s5anbb38gi5sfkxy19zpvkj8d0ij7m6cd0z4gmx4f5pf7pz0m3j"; depends=[Biobase BiocParallel edgeR ggplot2 igraph magrittr MASS Matrix matrixStats mgcv pbapply princurve RColorBrewer S4Vectors SingleCellExperiment slingshot SummarizedExperiment tibble TrajectoryUtils viridis]; }; - transcriptR = derive2 { name="transcriptR"; version="1.22.0"; sha256="1p5l2z3szx3qh02x7r81ajl7yc5wqsri6q6pzw83livmalcli5yy"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; - transcriptogramer = derive2 { name="transcriptogramer"; version="1.16.0"; sha256="15kb8b99bk1an4gkxc3fik0kqfvvp93rh2kb5vrw6zl5s1vqhpjk"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; - transformGamPoi = derive2 { name="transformGamPoi"; version="1.0.0"; sha256="0fxf5iin0mqmwshm9vgcp2m7832jw11jlcis33saz1b40clajr22"; depends=[DelayedArray glmGamPoi HDF5Array Matrix MatrixGenerics SummarizedExperiment]; }; - transite = derive2 { name="transite"; version="1.12.1"; sha256="0ykkwrhrmqh17dav2g14ispsnppk0w1kbqwhvjc36w3q9nbacaz2"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp scales TFMPvalue]; }; - transomics2cytoscape = derive2 { name="transomics2cytoscape"; version="1.4.0"; sha256="1jbk224x4nzlzd19ydy8bly4fs6l7qx7rk07i4zd4l6h622nz78k"; depends=[dplyr KEGGREST RCy3]; }; - traseR = derive2 { name="traseR"; version="1.24.0"; sha256="0ch8hamhjjdcpi95gjqybzmk8vgx2j70gnlfiswvp8bjwf15hlfp"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; - traviz = derive2 { name="traviz"; version="1.0.0"; sha256="03w4jpx5vp4cf3g77cks6dp8dkl66bbjsixr4j25xc3xr26g6kw0"; depends=[Biobase ggplot2 mgcv princurve RColorBrewer rgl SingleCellExperiment slingshot SummarizedExperiment viridis]; }; - treeio = derive2 { name="treeio"; version="1.18.1"; sha256="19i8jhvycv57zbxhpn5gx5ymdiws64kc3nidc00xh1j9a8xkj1aq"; depends=[ape dplyr jsonlite magrittr rlang tibble tidytree]; }; - treekoR = derive2 { name="treekoR"; version="1.2.1"; sha256="07bgxrb523abdvzg1c7ahl1mkkfiisl1z97jb3yjdp024zg64qdi"; depends=[ape data_table diffcyt dplyr edgeR ggiraph ggplot2 ggtree hopach lme4 multcomp patchwork SingleCellExperiment tidyr]; }; - trena = derive2 { name="trena"; version="1.16.0"; sha256="1kz68z0dixiiryd62diddq352h8sx6r15flxm7h715abcniniyjn"; depends=[AnnotationDbi biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMySQL RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 vbsr WGCNA xgboost]; }; - tricycle = derive2 { name="tricycle"; version="1.2.1"; sha256="19yh7yif8630j845m9rddva2z0xy4jcw9j4hvyr076jqbyxz998r"; depends=[AnnotationDbi circular dplyr GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors scater scattermore SingleCellExperiment SummarizedExperiment]; }; - trigger = derive2 { name="trigger"; version="1.40.0"; sha256="0irlxzy6vhp2q3lr9b4qnv7w43c3sdh7ali3rw1fgfpg29i4jc1f"; depends=[corpcor qtl qvalue sva]; }; - trio = derive2 { name="trio"; version="3.32.0"; sha256="16bnh1q53b2pkw4v7why5b1srl39zw6iza34yxynv34b8529sl46"; depends=[LogicReg siggenes survival]; }; - triplex = derive2 { name="triplex"; version="1.34.0"; sha256="0niyiafps242y9gnrc85ncb28c1q9ny1b20la53397h5w46sqq6i"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; - tripr = derive2 { name="tripr"; version="1.0.0"; sha256="0lcyjqn2my782hq8bmab08hpp0sgaz3c6wbcywn3pidcc0zqr56p"; depends=[config data_table dplyr DT golem gridExtra plot3D plotly plyr pryr RColorBrewer shiny shinyBS shinyFiles shinyjs stringdist stringr]; }; - tscR = derive2 { name="tscR"; version="1.6.1"; sha256="1k9f79gy0ickf8mizkmxzazkrbpl0rssdjafpcvx37a1ykgn9qax"; depends=[class cluster dplyr dtw GenomicRanges ggplot2 gridExtra IRanges kmlShape knitr latex2exp prettydoc RColorBrewer rmarkdown S4Vectors SummarizedExperiment]; }; - tspair = derive2 { name="tspair"; version="1.52.0"; sha256="0pm1rdiiza2737nar790zi2b37n25gpdxbg8ljg3a84mlji5jsws"; depends=[Biobase]; }; - ttgsea = derive2 { name="ttgsea"; version="1.2.1"; sha256="0b6c55vzay7jaacff3nrd0ks6l4qsmhjja38rs2qlabzqhyrfzi4"; depends=[data_table DiagrammeR keras purrr stopwords text2vec textstem tm tokenizers]; }; - tweeDEseq = derive2 { name="tweeDEseq"; version="1.40.0"; sha256="0xqd0i5d5q5fm58gxpxac24zpqpyj5dgab0kziwyn8pfyp1w5s4h"; depends=[cqn edgeR limma MASS]; }; - twilight = derive2 { name="twilight"; version="1.70.0"; sha256="1fy01p3fgajc2jhc286b51mcynj0lrzv3ln21kyj981qk2c390qq"; depends=[Biobase]; }; - twoddpcr = derive2 { name="twoddpcr"; version="1.18.0"; sha256="0b8r7dvqjlswkpfy141kibldj9aw3w8wxw0swmcgxkivml4gz1sw"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; - txcutr = derive2 { name="txcutr"; version="1.0.0"; sha256="0vzdbn75d9hvb4ni5ra7z4s52rbbl3sdi6kpidy421l3sb5clbsj"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors]; }; - tximeta = derive2 { name="tximeta"; version="1.12.4"; sha256="1lm2r64d6sdfzvxcabgs0214cdc5dl9pfx562acjcxz5mb101g9g"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble tximport]; }; - tximport = derive2 { name="tximport"; version="1.22.0"; sha256="0w6pr7s9j8l4fpn3przbfrsyxvzxc3ficgsychvhq3bami9np8g4"; depends=[]; }; - uSORT = derive2 { name="uSORT"; version="1.20.0"; sha256="0y6a6ksvbrxyqri0mc01nbls107sacs66zmbjs4qxq52rmy5xvcd"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; - uncoverappLib = derive2 { name="uncoverappLib"; version="1.4.0"; sha256="0nh5z1iirqdiv5q66k1r8byv9dasnzyinl0plan68gxvia770cnb"; depends=[BiocFileCache BSgenome_Hsapiens_UCSC_hg19 condformat DT EnsDb_Hsapiens_v75 EnsDb_Hsapiens_v86 GenomicRanges Gviz Homo_sapiens markdown openxlsx org_Hs_eg_db OrganismDbi processx rappdirs rlist Rsamtools shiny shinyBS shinycssloaders shinyjs shinyWidgets stringr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; - unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.30.0"; sha256="0kw26bm2yyna38q5r4zb2alpa3j4gx7v970419mnjlif4g0hmggk"; depends=[BiocGenerics HTqPCR]; }; - universalmotif = derive2 { name="universalmotif"; version="1.12.4"; sha256="01skcvzd815m3c15ka2pk7z6bggc4l8bhvaf4z9v95i36k4mn5zd"; depends=[BiocGenerics Biostrings ggplot2 IRanges MASS Rcpp RcppThread rlang S4Vectors yaml]; }; - variancePartition = derive2 { name="variancePartition"; version="1.24.0"; sha256="0f5y61dpzwmr8v7npim18zvxa8n49rbzclb9j72haba0px6ibhvw"; depends=[Biobase BiocParallel doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS Matrix pbkrtest progress reshape2 rlang scales]; }; - vbmp = derive2 { name="vbmp"; version="1.62.0"; sha256="0yavhi3n9nlgq2s0xvglsnfi9yxdl0di8vs30h9p6a0hh3d1c8ql"; depends=[]; }; - velociraptor = derive2 { name="velociraptor"; version="1.4.0"; sha256="16v1qxl8z5pr3ygvby5n2klw0wm468fbsch1b9a67il8bjxslg0j"; depends=[basilisk BiocGenerics BiocParallel BiocSingular DelayedArray Matrix reticulate S4Vectors scuttle SingleCellExperiment SummarizedExperiment zellkonverter]; }; - veloviz = derive2 { name="veloviz"; version="1.0.0"; sha256="0d7cfvr7vapz76r6j51bz3hccfhgmn2m2bvnr132p0kx3y18skqx"; depends=[igraph Matrix mgcv Rcpp RSpectra]; }; - vidger = derive2 { name="vidger"; version="1.14.0"; sha256="1xcb1v0bvgvwk2vr7zhqa05fml5gfr4dbv5l92z53sqamrb1wdkf"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; - viper = derive2 { name="viper"; version="1.28.0"; sha256="03k2cib485rn9spz6qfbgfsmrmlrr0a19dg79hsjziplzsq3jqj7"; depends=[Biobase e1071 KernSmooth mixtools]; }; - vissE = derive2 { name="vissE"; version="1.2.2"; sha256="0dz7rgdr8lbg2nl66k14pfza8pwabzvsfnw3n7lb24z669mifvhd"; depends=[ggforce ggplot2 ggraph ggrepel ggwordcloud GSEABase igraph msigdb plyr RColorBrewer reshape2 scales scico textstem tidygraph tm]; }; - vsn = derive2 { name="vsn"; version="3.62.0"; sha256="03p2wdjbjnrn1ddyz0fbn04mdxpsmv83qhh3apj6azshl0bs1j2x"; depends=[affy Biobase ggplot2 lattice limma]; }; - vtpnet = derive2 { name="vtpnet"; version="0.34.0"; sha256="1id1cp0ybpz3vmcgfxi7ibz7smqdlmamggyi7awmw3nx4kck6nx3"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; - vulcan = derive2 { name="vulcan"; version="1.16.0"; sha256="0dh3sr75xsax7610c6rgvsx23bnx79h5krx1ay62nnvpsakqjdr4"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq2 DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; - waddR = derive2 { name="waddR"; version="1.8.0"; sha256="0inm2n14jwv9y34fs0lkv75ayl75i43s99d36jnkgnppfamkbc8b"; depends=[arm BiocFileCache BiocParallel eva Rcpp RcppArmadillo SingleCellExperiment]; }; - wateRmelon = derive2 { name="wateRmelon"; version="2.0.0"; sha256="1kzkg3cnm5pcs6blpw1qn7na6z3kar93v67680wsxa6qxxdiggk3"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; - wavClusteR = derive2 { name="wavClusteR"; version="2.28.0"; sha256="1a1zhckrgq5yl51acj5piyh2hq70q6hhpym4cawzdssxhcbq70bk"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr]; }; - weaver = derive2 { name="weaver"; version="1.60.0"; sha256="024yqr344zdahliwnv4xg6jq7hcvgvq7y6w2yl3d4iqhi4c84hg7"; depends=[codetools digest]; }; - webbioc = derive2 { name="webbioc"; version="1.66.0"; sha256="1r3rjvfhqbbzdhlslnc86kr2iip3xgvr81zpvcr8xv9mysgrln17"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; }; - weitrix = derive2 { name="weitrix"; version="1.6.0"; sha256="0aasilfzxg0npb1x2bwkjw6lhigypmqjjpw38qrp7pz1r0w5nmwa"; depends=[assertthat BiocGenerics BiocParallel Ckmeans_1d_dp DelayedArray DelayedMatrixStats dplyr ggplot2 glm2 limma purrr reshape2 RhpcBLASctl rlang S4Vectors scales SummarizedExperiment topconfects]; }; - widgetTools = derive2 { name="widgetTools"; version="1.72.0"; sha256="0jajfh78116wjfwbmzfvcbxswai4jj9ypzmfhs5j5iypaf8zff8j"; depends=[]; }; - wiggleplotr = derive2 { name="wiggleplotr"; version="1.18.0"; sha256="01y1rbmxjza7qx3q33k0r241if69hzkx9plgmj59wyji22lm7syi"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; - wpm = derive2 { name="wpm"; version="1.4.0"; sha256="1jcidw17bhf42ivywkcqgsd0i93mq32gishnz7h9syvv25qcbrsy"; depends=[Biobase cli config dplyr DT ggplot2 golem logging RColorBrewer rlang shiny shinycustomloader shinydashboard shinyWidgets stringr SummarizedExperiment]; }; - wppi = derive2 { name="wppi"; version="1.2.0"; sha256="1spwa8p6w3pyw21dvd1lrhcz1sphdsmsd408jv55ss9nbgvgrp23"; depends=[dplyr igraph logger magrittr Matrix OmnipathR progress purrr RCurl rlang tibble tidyr]; }; - xcms = derive2 { name="xcms"; version="3.16.1"; sha256="19kjyi6br9qp2pnp24shgbww3iqaaqxk9791w8w8qbd6sxijd143"; depends=[Biobase BiocGenerics BiocParallel IRanges lattice MassSpecWavelet MsCoreUtils MsFeatures MSnbase mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors SummarizedExperiment]; }; - xmapbridge = derive2 { name="xmapbridge"; version="1.52.0"; sha256="1zsqhisbq6f9qgw9f0a6ixxh635h3qm17117yfns5nnfw73ndlgi"; depends=[]; }; - yamss = derive2 { name="yamss"; version="1.20.0"; sha256="141hbryifm6na5shjyrbjwwksqnl75kqp1m2zl03l9sjqm0kapab"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; - yarn = derive2 { name="yarn"; version="1.20.0"; sha256="0nk4qzrwjiv8q39lgil9x25bm3gpzrnhd37d7754kpxhs2fsmw9d"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; - zFPKM = derive2 { name="zFPKM"; version="1.16.0"; sha256="0fk05vrmyyrhmkwi06lsi553mlpqj3fgwhk1kygz83iqv5z2vfw9"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; - zellkonverter = derive2 { name="zellkonverter"; version="1.4.0"; sha256="1ihp2f23lpdfgf3qliy22vrq8czm353hyhqf74r5r712190k6pgg"; depends=[basilisk cli DelayedArray Matrix reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; - zinbwave = derive2 { name="zinbwave"; version="1.16.0"; sha256="05w95bnq63a339d8x4932k81ycqf825s3qwn98vr52v5g2hv46fq"; depends=[BiocParallel edgeR genefilter Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; - zlibbioc = derive2 { name="zlibbioc"; version="1.40.0"; sha256="0a0dl7z58zxdj6938zbxixphgljj1giylk1nd05bb7qsccmp0xhj"; depends=[]; }; + ABSSeq = derive2 { name="ABSSeq"; version="1.50.0"; sha256="1kwl0gcqwbgblwvpbvqlgnsi91km77j11f0q1f0gd6hhnv38mmlv"; depends=[limma locfit]; }; + ABarray = derive2 { name="ABarray"; version="1.64.0"; sha256="0kjq00i2mb21xyjjs3jy09ps80f11cy37wywzjvmxyjxzbsk4d7r"; depends=[Biobase multtest]; }; + ACE = derive2 { name="ACE"; version="1.14.0"; sha256="1xnw288vz810vjkidar5h218wyc0q2hx0k4zi3r88vaz5rfhc05m"; depends=[Biobase GenomicRanges ggplot2 QDNAseq]; }; + ACME = derive2 { name="ACME"; version="2.52.0"; sha256="0ilcsgpc4m47gifxc0yzx2xi3g4day515mncnnjvfdj3iq8xwk25"; depends=[Biobase BiocGenerics]; }; + ADAM = derive2 { name="ADAM"; version="1.12.0"; sha256="1cgcjykik9hjrwlvvgaccprcrimgq5kwh9cj6367yk9m574a4gmn"; depends=[dplyr DT GO_db KEGGREST knitr pbapply Rcpp stringr SummarizedExperiment]; }; + ADAMgui = derive2 { name="ADAMgui"; version="1.12.0"; sha256="0vvd5qdwkfcr7zg7z63x3vvrcg63r6c9p383yvcg2lp8zmx8hsbs"; depends=[ADAM colorRamps data_table dplyr DT ggplot2 ggpubr ggrepel ggsignif GO_db gridExtra knitr RColorBrewer reshape2 shiny shinyjs stringi stringr testthat varhandle]; }; + ADImpute = derive2 { name="ADImpute"; version="1.6.0"; sha256="0885kd8mpmwjpzpx14pi6l3mqcvsixk10vkf5h4sqb7di0nnna4w"; depends=[BiocParallel checkmate data_table DrImpute kernlab MASS Matrix rsvd S4Vectors SAVER SingleCellExperiment SummarizedExperiment]; }; + ADaCGH2 = derive2 { name="ADaCGH2"; version="2.36.0"; sha256="0awjxl2lwyh7hkjsx1zqsvrh649s9zn89za1iv8yd9l48ch2zfs5"; depends=[aCGH bit cluster DNAcopy ff GLAD snapCGH tilingArray waveslim]; }; + AGDEX = derive2 { name="AGDEX"; version="1.44.0"; sha256="0c44fw5ajdjc13409rn3lsv0jhlqa2qcak9b1k8hpig486xxzsr9"; depends=[Biobase GSEABase]; }; + AIMS = derive2 { name="AIMS"; version="1.28.0"; sha256="1z7yzaizyzcv556w8880603nd947k0d6raadjm42mdl66mma0cdx"; depends=[Biobase e1071]; }; + ALDEx2 = derive2 { name="ALDEx2"; version="1.28.0"; sha256="1dx0ipj0vrickya4742zacdgrg9a0i9b4j4cxhld2bk77pmdvx38"; depends=[BiocParallel GenomicRanges IRanges multtest Rfast S4Vectors SummarizedExperiment zCompositions]; }; + AMARETTO = derive2 { name="AMARETTO"; version="1.12.0"; sha256="111dk19b9910icksyr592cvhc5gwvgknr5q4887j9yxbajd7hcmx"; depends=[BiocFileCache callr circlize ComplexHeatmap curatedTCGAData doParallel dplyr DT foreach ggplot2 glmnet gridExtra httr impute knitr limma Matrix matrixStats MultiAssayExperiment Rcpp readr reshape2 rmarkdown tibble]; }; + AMOUNTAIN = derive2 { name="AMOUNTAIN"; version="1.22.0"; sha256="0vdfabsrisdd7qq28f5ivd0v8zz49szqn677i5lhwnlaix220c54"; depends=[]; }; + ANCOMBC = derive2 { name="ANCOMBC"; version="1.6.0"; sha256="18yzi361qw2731s8bi23q7mjyk32gm6pmc2vb1kwqs97yipz5wrh"; depends=[MASS microbiome nloptr phyloseq Rdpack]; }; + ANF = derive2 { name="ANF"; version="1.18.0"; sha256="1fa2pbdapymrpz01ws0m2fbzf11d723x6rbsys29v06is57f5lpj"; depends=[Biobase igraph MASS RColorBrewer survival]; }; + APAlyzer = derive2 { name="APAlyzer"; version="1.10.0"; sha256="1xixj6ck1akwc01gv7xsgnnflrkhflsrpq2cbxh5s7z6xj0f8k00"; depends=[DESeq2 dplyr GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HybridMTest repmis Rsamtools Rsubread rtracklayer SummarizedExperiment tidyr VariantAnnotation]; }; + APL = derive2 { name="APL"; version="1.0.0"; sha256="1089klbirrnm99xw02bd0hfzqnhcq5fas9hw1l52x191j7b0363r"; depends=[ggplot2 ggrepel magrittr org_Hs_eg_db org_Mm_eg_db plotly reticulate rlang Seurat SingleCellExperiment SummarizedExperiment topGO viridisLite]; }; + ARRmNormalization = derive2 { name="ARRmNormalization"; version="1.36.0"; sha256="1pnvw8psbql787m8lrmhd9xbmgkc3dbc70yfds1aggv50dk3yjk1"; depends=[ARRmData]; }; + ASAFE = derive2 { name="ASAFE"; version="1.22.0"; sha256="1l9iqw2imr6w2gwqrmg05jp6lj2xc7hbyhd144d4q8vw8z7ga4ns"; depends=[]; }; + ASEB = derive2 { name="ASEB"; version="1.40.0"; sha256="1i0r4vimk6is4j4rr14ajp8papznpmmr0bhwd96s8w53cqdqph7p"; depends=[]; }; + ASGSCA = derive2 { name="ASGSCA"; version="1.30.0"; sha256="0mxrrkm2lg7gxjh8ynn6qmryn8wqda7b83sr51dpgblay83jcbaq"; depends=[MASS Matrix]; }; + ASICS = derive2 { name="ASICS"; version="2.12.0"; sha256="12v7fc0ck6aj78710q1g83gividipfy2l80nifr166rpw9j7gmsd"; depends=[BiocParallel ggplot2 glmnet gridExtra Matrix mvtnorm PepsNMR plyr quadprog ropls SummarizedExperiment zoo]; }; + ASSET = derive2 { name="ASSET"; version="2.14.0"; sha256="029acl5k9d4hnvy3jia9cr4rk6w31zn8b5s79i6lazq1cp236hbg"; depends=[MASS msm rmeta]; }; + ASSIGN = derive2 { name="ASSIGN"; version="1.32.0"; sha256="1f1lqip58cvf85nmq8mj7phlk0plcfv1h5ihc0cf2h5y7n4wrm9n"; depends=[ggplot2 gplots msm Rlab sva yaml]; }; + ASURAT = derive2 { name="ASURAT"; version="1.0.0"; sha256="160wvlvyc5dddjngmd21s1av292f6nvjkabag9iz8dipivicyi23"; depends=[circlize cluster ComplexHeatmap plot3D Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; + ASpediaFI = derive2 { name="ASpediaFI"; version="1.10.0"; sha256="1wn7iwaj92j1qvfp4l93ir4dawd1yczff3qyhh886qw2jcbf0b99"; depends=[BiocParallel biomaRt dplyr DRaWR e1071 fgsea GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz igraph IRanges IVAS limma Matrix mGSZ reshape2 ROCR Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; + ASpli = derive2 { name="ASpli"; version="2.6.0"; sha256="1frlcwa8m4imfx6ncav8r8yskyaf4ibha177mfnp9y84w6mphynz"; depends=[AnnotationDbi BiocGenerics BiocStyle data_table DT edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz htmltools igraph IRanges limma MASS pbmcapply Rsamtools S4Vectors tidyr UpSetR]; }; + ATACseqQC = derive2 { name="ATACseqQC"; version="1.20.2"; sha256="0jj7n0mcj0gciw0ksazlksgmwzp51a40pwqhf0c7la0cc4bnrkqp"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno edgeR GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; }; + AUCell = derive2 { name="AUCell"; version="1.18.0"; sha256="11dh5nv3fljy9qmm1pnhqdsl20k2y0n82pqrrijf3ymj37y4bdgz"; depends=[BiocGenerics data_table DelayedArray DelayedMatrixStats GSEABase mixtools R_utils shiny SummarizedExperiment]; }; + AWFisher = derive2 { name="AWFisher"; version="1.10.0"; sha256="050k7w0azsl7rqx2pxgccihzc2q8pmh6fyy4gib2d42sdyijr2n1"; depends=[edgeR limma]; }; + AffiXcan = derive2 { name="AffiXcan"; version="1.14.0"; sha256="0wj9shzmlxpksbxny571xzfcmmqqzjlk1vq4mx1is2r6ma7jkblq"; depends=[BiocParallel crayon MultiAssayExperiment SummarizedExperiment]; }; + AffyCompatible = derive2 { name="AffyCompatible"; version="1.56.0"; sha256="0x3lj1jgqq67389rzfklah5p878ns9b4fpdpz455m2gq9sk7qsda"; depends=[Biostrings RCurl XML]; }; + AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.42.0"; sha256="16akwmpzwxai7ks5bvc1yyb9sx2scv9b9gas5avb0sk5fk0h3nsf"; depends=[affy]; }; + AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.46.0"; sha256="0jic89gyphbv7jzlfgm9bh1aq48lp86rq6hr34gsg9z0pa1192xa"; depends=[affy affycoretools Biobase limma preprocessCore]; }; + AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.34.0"; sha256="0w4xd0xzkwx7bbhrgqligpahlhg85rginknx520z891r8v0bim2z"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; + AlphaBeta = derive2 { name="AlphaBeta"; version="1.10.0"; sha256="1ikdrigma02gnl6ggrc89bjsiqmd7knpb9kw7nqyrdnv3qjd9iag"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; }; + AlpsNMR = derive2 { name="AlpsNMR"; version="3.6.0"; sha256="0gmzabwidvh1ja8821sc2whn8nhw6g26694f35x1193kpr858qih"; depends=[baseline BiocParallel dplyr fs future ggplot2 glue htmltools magrittr matrixStats mixOmics pcaPP purrr readxl reshape2 rlang rmarkdown signal speaq stringr tibble tidyr vctrs]; }; + AnVIL = derive2 { name="AnVIL"; version="1.8.0"; sha256="13f9jivc53p5hixmpwiqcqdns0yq3mskvlzc40g0ckz7v52jy63b"; depends=[BiocManager dplyr futile_logger httr jsonlite rapiclient rlang tibble tidyr tidyselect]; }; + AnVILBilling = derive2 { name="AnVILBilling"; version="1.6.0"; sha256="08bc1lsjkgs0hmrfi2fbk5swbi5ckgrv4vhsfkqqywfpnkq9k436"; depends=[bigrquery DBI dplyr DT ggplot2 lubridate magrittr plotly shiny shinytoastr]; }; + AnVILPublish = derive2 { name="AnVILPublish"; version="1.6.0"; sha256="1iwvm60lricpsf4nr99wxhni0lwaa4z8aibr7lwj9gdwf2y43c9x"; depends=[AnVIL httr jsonlite readr rmarkdown whisker yaml]; }; + Anaquin = derive2 { name="Anaquin"; version="2.20.0"; sha256="1jgpnls2djl1yzvnk64qc83mljmlci7wflwkza3wr0sv6r47b0dd"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; + AneuFinder = derive2 { name="AneuFinder"; version="1.24.0"; sha256="1acsp987jv2x4qwbgy3y7ff4r2qz7680b0nbr37m4lmncqfgh8yl"; depends=[AneuFinderData bamsignals BiocGenerics Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; }; + AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.58.0"; sha256="15cwy7lic89jwl3dr7j4pb5bx457jdpvzvylr71624s0p0j9rgwn"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; }; + AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.20.0"; sha256="082lpcd6yr2nkxndlck2wqqd3nfdx7lnpw8barxgv41q4l7v4ald"; depends=[GenomicRanges lazyeval]; }; + AnnotationForge = derive2 { name="AnnotationForge"; version="1.38.0"; sha256="18rcfadxdaggyjj3rj17nbvgddlqs6zlr5jmq9a02kin59czvzz8"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; + AnnotationHub = derive2 { name="AnnotationHub"; version="3.4.0"; sha256="03dmbx43rsv9xv94lk12gpraq47ryc13jijwma3q05hl9wn8xjxs"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; }; + AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.26.1"; sha256="1s104n0dkrncbdihd4jq28ibl0v8fnbaxfkhrv7jmx3wh7j4vnfp"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocCheck BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges jsonlite OrganismDbi RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; + ArrayExpress = derive2 { name="ArrayExpress"; version="1.56.0"; sha256="0v2v7v0gim0bsg34ciplapz6mjih68yqhcgzdlhcyj2d6vrgiad5"; depends=[Biobase limma oligo XML]; }; + ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.46.0"; sha256="1bwgqadqrx2zasyr1dhapmwkapdfdmzl6z7fdlmafmlsfyvqvq68"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer Rhtslib rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; + AssessORF = derive2 { name="AssessORF"; version="1.14.0"; sha256="1l87bpny9k3jbzbzmb9h2ijvblrj471gqv26fyzbvb3vr6y406z7"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; + BAC = derive2 { name="BAC"; version="1.56.0"; sha256="0dkw7438d2sf6nb577dnzija54qs0nhlr47lb73li60fhlnvqmh2"; depends=[]; }; + BADER = derive2 { name="BADER"; version="1.34.0"; sha256="0i5x1r2ns1hxhqk5jyfqird81hck1hllvvgx5bn0rb5vl99g8spm"; depends=[]; }; + BAGS = derive2 { name="BAGS"; version="2.36.0"; sha256="1c1sdv8199kj2pd1hwnbmbf2a4fb7zkazsjgn8hi9c5sm7mlnc29"; depends=[Biobase breastCancerVDX]; }; + BANDITS = derive2 { name="BANDITS"; version="1.12.0"; sha256="1423djb7cij68y0q2dcp8q7lrcn2fxjn6d25v4qy3w00b2w8ppg9"; depends=[BiocParallel data_table doParallel doRNG DRIMSeq foreach ggplot2 MASS R_utils Rcpp RcppArmadillo]; }; + BASiCS = derive2 { name="BASiCS"; version="2.8.0"; sha256="06g041xcv2qci2aapj3g4i32xzw508nhvvss9lfn8g2vdhj07inn"; depends=[assertthat Biobase BiocGenerics BiocParallel coda cowplot ggExtra ggplot2 hexbin MASS Matrix matrixStats Rcpp RcppArmadillo reshape2 S4Vectors scran scuttle SingleCellExperiment SummarizedExperiment viridis]; }; + BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.26.0"; sha256="1m4pwfl920pkhnpdc1qps65nsihn73hzyach1d5dhvx884540lq4"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; }; + BCRANK = derive2 { name="BCRANK"; version="1.58.0"; sha256="0c1q7vag7jj16wiw0lbvl1b5k8f1wyn9rv0rpnpl4642ab6sps1v"; depends=[Biostrings]; }; + BDMMAcorrect = derive2 { name="BDMMAcorrect"; version="1.14.0"; sha256="19b3jm2a5nz7p43sxa0b08zvc1lvjnqd5g052rj98n6knfb403k7"; depends=[ape ellipse ggplot2 Rcpp RcppArmadillo RcppEigen SummarizedExperiment vegan]; }; + BEARscc = derive2 { name="BEARscc"; version="1.16.0"; sha256="0vslyhscqw1y519qmbilb1fw0482aplib8kb37pvmhy3ak1mcxqj"; depends=[data_table ggplot2 SingleCellExperiment]; }; + BEAT = derive2 { name="BEAT"; version="1.34.0"; sha256="1hgqiy52l34z8zxzvq5j528sy3pf2l5q1mjsccs2nkxalpd31vmg"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; }; + BEclear = derive2 { name="BEclear"; version="2.12.0"; sha256="0x43yfnmb2d782g3g52nqdfs90i3zrrlqz8qy3ybmgv5f8n92p15"; depends=[abind BiocParallel data_table dixonTest futile_logger Matrix Rcpp Rdpack]; }; + BGmix = derive2 { name="BGmix"; version="1.56.0"; sha256="03f6nknp3n49yvg2d9qsmds676rva70pr4wjz0md228jczgjk0vj"; depends=[KernSmooth]; }; + BHC = derive2 { name="BHC"; version="1.48.0"; sha256="1kqajd16981y5yaak2imaq1i7pilgqdr3nbhggsakh787j1d9rc5"; depends=[]; }; + BLMA = derive2 { name="BLMA"; version="1.20.0"; sha256="1425r1gavszzdfh7zy9gnc20507vjqimadxrm9yi1y1knk5ikas2"; depends=[Biobase graph GSA limma metafor PADOG ROntoTools]; }; + BOBaFIT = derive2 { name="BOBaFIT"; version="1.0.0"; sha256="0x62nqlgaa9b69739zy68pycw4c46jvzynzrllrpk9lfb5bjx1ry"; depends=[dplyr GenomicRanges ggbio ggforce ggplot2 magrittr NbClust plyranges stringr tidyr]; }; + BPRMeth = derive2 { name="BPRMeth"; version="1.22.0"; sha256="0841wcb5khfi7g358jkrih64fwabwkdf9xydxxlvvvr4xw92pxqj"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; }; + BRAIN = derive2 { name="BRAIN"; version="1.42.0"; sha256="0b2fjhv05lgvgpdfs2p191vv8d7v3h1gfwi29hc5agpk3fg1rzqn"; depends=[Biostrings lattice PolynomF]; }; + BRGenomics = derive2 { name="BRGenomics"; version="1.8.0"; sha256="1nyf5qsf5av2s81bbwi43skaggwa5pd59sfidavr1vcizjmc9qd8"; depends=[DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + BSgenome = derive2 { name="BSgenome"; version="1.64.0"; sha256="17gqrmaf6xxghgrzcansl9gfw3ghkrqp87swlnwgyghqvflr5qxc"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges matrixStats Rsamtools rtracklayer S4Vectors XVector]; }; + BUMHMM = derive2 { name="BUMHMM"; version="1.20.0"; sha256="1xn4ikvjilr04c68y5is27g9kmxlmlijx3a1jq8vjbzz410ir6g9"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; }; + BUS = derive2 { name="BUS"; version="1.52.0"; sha256="1w0d79gqk6xb6yhnffka51aiv540j1xknryhr0xznb9q8hf6aymi"; depends=[infotheo minet]; }; + BUScorrect = derive2 { name="BUScorrect"; version="1.14.0"; sha256="04c6xl2nbfgvzqi0kqf1g5sp3bf6a1blaqhassja9ara0wbs7i7a"; depends=[gplots SummarizedExperiment]; }; + BUSpaRse = derive2 { name="BUSpaRse"; version="1.10.0"; sha256="11rw7r0kdaqbj9iwjbyg107ayzqnrckc6w1g3v13lgdym0c864mr"; depends=[AnnotationDbi AnnotationFilter BH BiocGenerics biomaRt Biostrings BSgenome dplyr ensembldb GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr Matrix plyranges Rcpp RcppArmadillo RcppProgress S4Vectors stringr tibble tidyr zeallot]; }; + BUSseq = derive2 { name="BUSseq"; version="1.2.0"; sha256="1lcw75drcmsrpl5ski1xjhjr8whndp5h8y8hs5vkjqmllrrw0x11"; depends=[gplots S4Vectors SingleCellExperiment SummarizedExperiment]; }; + BaalChIP = derive2 { name="BaalChIP"; version="1.22.0"; sha256="02qwk9n2fyg5f9xxjiiha9mi6p9ii3zi5x7w84sh5d5g58s27g6q"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; }; + BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.24.0"; sha256="1a1pqmh5ak9s3k1lxw6flanchk24zyznwm34ixi2b78wdc3hqgm9"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; + BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.40.0"; sha256="0jyw4pnybsd6ywpaamk5ywkrcib2z48farsnszmwq97zlbmra7fj"; depends=[RCurl RJSONIO]; }; + Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.32.0"; sha256="14pvjdkgmkbnbmyyp8wfgvs6b1bvy1rhqwg8hc6jclwl8hfyxxxp"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; }; + BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.24.0"; sha256="0qmdiwch808i2k8fcgx8xdrk9j4lzm7x6j9k6n7iac125i1san31"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; }; + BatchQC = derive2 { name="BatchQC"; version="1.24.0"; sha256="1mhffv9ic52v7jm3bphg2q0spk4fz729yjapiqxl56bira04bagi"; depends=[corpcor ggvis gplots heatmaply knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; }; + BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.22.0"; sha256="122vg0lvs3fkgwcvn259rk0m1vaz19pdfvhsj5m1hd3d2h44pv65"; depends=[Biobase]; }; + BayesSpace = derive2 { name="BayesSpace"; version="1.6.0"; sha256="0086fw2chymjwxwgzax6lky84kaa34900ca2p90pbjqx14b161vf"; depends=[assertthat BiocFileCache BiocSingular coda DirichletReg ggplot2 Matrix mclust purrr Rcpp RcppArmadillo RcppDist RcppProgress RCurl rhdf5 S4Vectors scales scater scran SingleCellExperiment SummarizedExperiment xgboost]; }; + BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.48.0"; sha256="19f0y6drsrsrwysb16xx6mafgiw55fr35pwxkjxn0ks6jc5vx1cx"; depends=[]; }; + BgeeCall = derive2 { name="BgeeCall"; version="1.12.0"; sha256="0lwfcrzl048bn6jilx0ls29y6nnss66f7nr673h7m5962ay61mwp"; depends=[biomaRt Biostrings data_table dplyr GenomicFeatures jsonlite rhdf5 rslurm rtracklayer sjmisc tximport]; }; + BgeeDB = derive2 { name="BgeeDB"; version="2.22.0"; sha256="093zk43x8i9ajaqsdhndkyal3dizllr3g85ziavb3k73dzvarzsc"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; }; + BiFET = derive2 { name="BiFET"; version="1.16.0"; sha256="03ypbbn8i0f4bl4m6wfdcv702jydniak56wqjb1vlrckd9aphwzq"; depends=[GenomicRanges poibin]; }; + BiGGR = derive2 { name="BiGGR"; version="1.32.0"; sha256="0n57bgl6xz5b1gpw4isimq2pqxmlabn7jzhbjg2fbxcklabdvrcw"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; + BiRewire = derive2 { name="BiRewire"; version="3.28.0"; sha256="0r3i7n45qgj8wzdsx8wmfk0lc4xbcvxvmfziiqzig7r706q2c2hm"; depends=[igraph Matrix Rtsne slam]; }; + BiSeq = derive2 { name="BiSeq"; version="1.36.0"; sha256="1cnsh7cx500a3aaxqc7vn56b9ng2m5m9gxw1bhi84nm1hiig4ff1"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; + BicARE = derive2 { name="BicARE"; version="1.54.0"; sha256="0qjh5bsjcjry6k1vzdaascwy2shjrkc2bw0w57w0qa458cbi89z2"; depends=[Biobase GSEABase multtest]; }; + BindingSiteFinder = derive2 { name="BindingSiteFinder"; version="1.2.0"; sha256="1lypprchiyxyfjj33qzq00xla4sqd3w9dp3sa863iyhycwr3bya8"; depends=[GenomicRanges ggforce ggplot2 matrixStats plyr rtracklayer S4Vectors tidyr]; }; + BioCor = derive2 { name="BioCor"; version="1.20.0"; sha256="004mksswampwisljcdz6fswwbgdjdii3y86gjzib0gf8v4w7w4q3"; depends=[BiocParallel GSEABase Matrix]; }; + BioMM = derive2 { name="BioMM"; version="1.12.0"; sha256="1sxa6safl4dp2b89bmgshdvkc1s0kxrmld3xfv2wlxkf90b3b57h"; depends=[BiocParallel CMplot e1071 ggplot2 glmnet imager lattice nsprcomp precrec ranger rms topGO vioplot xlsx]; }; + BioMVCClass = derive2 { name="BioMVCClass"; version="1.64.0"; sha256="078pnyygbvbfxziqspfr1nn78w67xyb4qmiwc34czga5psblvfwz"; depends=[Biobase graph MVCClass Rgraphviz]; }; + BioNERO = derive2 { name="BioNERO"; version="1.4.0"; sha256="1nyzjbl0gcwvbj2nxfwykirikf8j3rsx5ny45bqjbcb4r23k65kj"; depends=[BiocParallel ComplexHeatmap DESeq2 dynamicTreeCut GENIE3 ggnetwork ggnewscale ggplot2 ggpubr igraph intergraph matrixStats minet NetRep networkD3 RColorBrewer reshape2 SummarizedExperiment sva WGCNA]; }; + BioNet = derive2 { name="BioNet"; version="1.56.0"; sha256="0kcw71j4nmdkn373wk21ak6h0v4gycivnfrklb72kk1qcmsy1wrm"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; + BioNetStat = derive2 { name="BioNetStat"; version="1.16.0"; sha256="0f387j35lj32ryiw48jz8gc08al2lmmv9zvbbgyjq9wmqlca3dfb"; depends=[BiocParallel DT ggplot2 Hmisc igraph knitr markdown pathview pheatmap plyr psych RColorBrewer RJSONIO rmarkdown shiny shinyBS whisker yaml]; }; + BioPlex = derive2 { name="BioPlex"; version="1.2.0"; sha256="08688yjmvqgdzhxxlx0nxcfzsbfg92z0bnbq37aicldzmk9l9h00"; depends=[BiocFileCache GenomeInfoDb GenomicRanges GEOquery graph SummarizedExperiment]; }; + BioQC = derive2 { name="BioQC"; version="1.24.0"; sha256="0vb2nnzqvyv25pw8qshcmijravswafg0858pkgqjgiv7wsr2mn3m"; depends=[Biobase edgeR Rcpp]; }; + BioTIP = derive2 { name="BioTIP"; version="1.10.0"; sha256="1sihi5zy7mlabh3ix1wvdqz8ibfq1avl8bnxjhvxyzq40zbcklh6"; depends=[cluster GenomicRanges igraph MASS psych scran stringr]; }; + Biobase = derive2 { name="Biobase"; version="2.56.0"; sha256="1mnxky78an079p60427cjvk4fzilp0xzy6b85fq274qvdcrz8jbv"; depends=[BiocGenerics]; }; + BiocCheck = derive2 { name="BiocCheck"; version="1.32.0"; sha256="1k1gxzmxx26hmwdxgagv93mv4jwyygkk8703ds6nvryzhqffzkbc"; depends=[BiocManager biocViews codetools graph httr knitr stringdist]; }; + BiocDockerManager = derive2 { name="BiocDockerManager"; version="1.8.0"; sha256="0kl6r8ad728a8dvqx0safj7v5gj1rxxcdiw44jkr1pd5ddv0xbi6"; depends=[dplyr httr memoise readr whisker]; }; + BiocFileCache = derive2 { name="BiocFileCache"; version="2.4.0"; sha256="1bdbmlixrd8wvs25nmzdksq5hwnsxf8b6ds9qwx01h284vky5vsw"; depends=[curl DBI dbplyr dplyr filelock httr rappdirs RSQLite]; }; + BiocGenerics = derive2 { name="BiocGenerics"; version="0.42.0"; sha256="0iv9bnpw2hycndwbmjsszqfwrksz6dfr6qcz78jkssc9ldsgmdhc"; depends=[]; }; + BiocIO = derive2 { name="BiocIO"; version="1.6.0"; sha256="16j826w4zrmbgpmq6nyglcrjailsfv48ih1rz1qn383g7v503ydp"; depends=[BiocGenerics S4Vectors]; }; + BiocNeighbors = derive2 { name="BiocNeighbors"; version="1.14.0"; sha256="1a43hzmcpxviqa9723hkafr6gm358amfpqj9d56imclkkfkdz95x"; depends=[BiocParallel Matrix Rcpp RcppHNSW S4Vectors]; }; + BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.16.0"; sha256="1alplszw84vqa1mvzp996f94s40scmh4qwbrqhg43hrnyvbnq7pi"; depends=[bigrquery car ComplexHeatmap curatedTCGAData DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 ggpubr graph httr IRanges magrittr plyr Rgraphviz rjson S4Vectors scales shiny SummarizedExperiment]; }; + BiocParallel = derive2 { name="BiocParallel"; version="1.30.0"; sha256="0krirrlxprcx3m4zl1lqr6mrm3w07xy3216iszvv47nfqq845mbb"; depends=[BH futile_logger snow]; }; + BiocPkgTools = derive2 { name="BiocPkgTools"; version="1.14.0"; sha256="1v0824vmg49q9lh0igdyniryyknw6vmh462rn25kmg9hdna0w99h"; depends=[BiocFileCache BiocManager biocViews dplyr DT gh graph htmltools htmlwidgets httr igraph jsonlite magrittr RBGL readr rlang rvest stringr tibble tidyr tidyselect xml2]; }; + BiocSet = derive2 { name="BiocSet"; version="1.10.0"; sha256="1ghba7020inrdxlbrrgds9gjymjxjma2p89b9lgkjin89zalqglh"; depends=[AnnotationDbi BiocIO dplyr KEGGREST ontologyIndex plyr rlang S4Vectors tibble tidyr]; }; + BiocSingular = derive2 { name="BiocSingular"; version="1.12.0"; sha256="1sraycnn0jahpi8kni1y8ik00ga89fvwqjmbr8388968q22mvm3x"; depends=[beachmat BiocGenerics BiocParallel DelayedArray irlba Matrix Rcpp rsvd S4Vectors ScaledMatrix]; }; + BiocSklearn = derive2 { name="BiocSklearn"; version="1.18.0"; sha256="18qx1rpym845pa0kzrx6cmcdjng17inc2qa131apymrgfndgqa7y"; depends=[basilisk knitr Rcpp reticulate SummarizedExperiment]; }; + BiocStyle = derive2 { name="BiocStyle"; version="2.24.0"; sha256="1nwiib201b9q1x19ihqjqr5jl0vnid8wfgpi8sa3y02bn722g5a5"; depends=[BiocManager bookdown knitr rmarkdown yaml]; }; + BiocVersion = derive2 { name="BiocVersion"; version="3.15.2"; sha256="0rs4nyza4hqqk204d037gi013135wgfhx5asq2dsdjc9vk5nwzfn"; depends=[]; }; + BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.22.0"; sha256="1jj4icpkhrv9f6yx3vghkpdil1pfghf3yvc9756wmndvhs100r5l"; depends=[BiocStyle bookdown git2r httr knitr rmarkdown rstudioapi stringr usethis]; }; + Biostrings = derive2 { name="Biostrings"; version="2.64.0"; sha256="1sz52hz89l9w2y2bvyis7kczslk1xnskls9l2bn1s3dhnjzdzhg8"; depends=[BiocGenerics crayon GenomeInfoDb IRanges S4Vectors XVector]; }; + BitSeq = derive2 { name="BitSeq"; version="1.40.0"; sha256="0pfsdc15zfn7sizf0zqh0wjg5yr84kd9lmdifykkbxk882gjy5fh"; depends=[IRanges Rhtslib Rsamtools S4Vectors]; }; + BloodGen3Module = derive2 { name="BloodGen3Module"; version="1.4.0"; sha256="1dlb6jbzrdp417sm55y0h90sx2l62h4329l67w49z321yi7iyw1j"; depends=[circlize ComplexHeatmap ExperimentHub ggplot2 gtools limma matrixStats preprocessCore randomcoloR reshape2 SummarizedExperiment testthat V8]; }; + BrainSABER = derive2 { name="BrainSABER"; version="1.6.0"; sha256="1rc4ff0rglbj1kax4fdn6mmv8jzz5qyapi9mjb4nh9ffaswfj09n"; depends=[BiocFileCache biomaRt data_table lsa S4Vectors shiny SummarizedExperiment]; }; + BridgeDbR = derive2 { name="BridgeDbR"; version="2.6.0"; sha256="1389ymch31wqmp8spvwzyhn95bv1h7nkzhin6mzz1prp8rsdpc0z"; depends=[curl rJava]; }; + BrowserViz = derive2 { name="BrowserViz"; version="2.18.0"; sha256="03z1vkbimvhgjl9c08nndvjzgg2d3d3sgx9mk8bv65brpgpzd3nd"; depends=[BiocGenerics httpuv jsonlite]; }; + BubbleTree = derive2 { name="BubbleTree"; version="2.26.0"; sha256="1q5hlq80p848askxafni502yxnp587vpla65hb2925pcighnz5a3"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; }; + BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.60.0"; sha256="1sla61mrmwpk3aczgggzmnfgy9wr1cqknv6rsyscjniii7shn360"; depends=[]; }; + BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.60.0"; sha256="07m2r046lk1akbccy52n2rg3ydzkwl157xlyylfqhkmpz7x9zix2"; depends=[BufferedMatrix]; }; + BumpyMatrix = derive2 { name="BumpyMatrix"; version="1.4.0"; sha256="0gy972qvvvf4rbxrcj24l3x8kk3ic85y6l655d54fvlbwr8h82iv"; depends=[IRanges Matrix S4Vectors]; }; + CAEN = derive2 { name="CAEN"; version="1.4.0"; sha256="054wrw550sxn6gn1h3yra623k48syiqn0cm0kz0nn63ys9fmwk3l"; depends=[PoiClaClu SummarizedExperiment]; }; + CAFE = derive2 { name="CAFE"; version="1.32.0"; sha256="1mcmfghl982dqr13bnybx0v5gs302hnnar1m64l13f4si6lnxk62"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; }; + CAGEfightR = derive2 { name="CAGEfightR"; version="1.16.0"; sha256="1nn1flq3732vbxb7r971sbk1qxiqdgzgib8v0g21v8362vajcjwv"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges Gviz InteractionSet IRanges Matrix pryr rtracklayer S4Vectors SummarizedExperiment]; }; + CAGEr = derive2 { name="CAGEr"; version="2.2.0"; sha256="03gxnbsf8byk1ggijf264p6dyvl09hihkmrcx5m28pjs0imlzmhw"; depends=[BiocGenerics BiocParallel BSgenome data_table DelayedArray DelayedMatrixStats formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape2 Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; }; + CAMERA = derive2 { name="CAMERA"; version="1.52.0"; sha256="0jz8i0m8g8f18yzjzkgf4xsk038nm6h6qdhsdmmkprz97ysjayr5"; depends=[Biobase graph Hmisc igraph RBGL xcms]; }; + CARNIVAL = derive2 { name="CARNIVAL"; version="2.6.0"; sha256="0b0w2ijpv9mv2hiy82wl6lnpwxh30384c675748naq77ss93k8qr"; depends=[dplyr igraph lpSolve readr rjson rmarkdown stringr tibble tidyr]; }; + CATALYST = derive2 { name="CATALYST"; version="1.20.0"; sha256="156c5rdc1s84m6fwhwifwk603qwscw29dyvrni9ah9q2iz0xb4hm"; depends=[circlize ComplexHeatmap ConsensusClusterPlus cowplot data_table dplyr drc flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra magrittr Matrix matrixStats nnls purrr RColorBrewer reshape2 Rtsne S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; + CAnD = derive2 { name="CAnD"; version="1.27.0"; sha256="14x0m5iv7dm1iii5zsny9wnf4j5ddh0kij2jm658r3i4wnc99mkb"; depends=[ggplot2 reshape]; }; + CBEA = derive2 { name="CBEA"; version="1.0.0"; sha256="08hhpd7syycliqn5fw3x6pfxi89pghm4b4my4p73lvgkr75n71x4"; depends=[BiocParallel BiocSet dplyr fitdistrplus generics glue goftest lmom magrittr mixtools Rcpp rlang SummarizedExperiment tibble tidyr TreeSummarizedExperiment]; }; + CCPROMISE = derive2 { name="CCPROMISE"; version="1.22.0"; sha256="1zmm22rbwp706l2xl5623aja0fw01r0w9cn3dv8ga0riz3pz2fy7"; depends=[Biobase CCP GSEABase PROMISE]; }; + CEMiTool = derive2 { name="CEMiTool"; version="1.20.0"; sha256="05lpi29mwv45na4b2pi59fdv6vfxdjmyd0xf1lsrmiy7c1p2df8s"; depends=[clusterProfiler data_table dplyr DT fastcluster fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; }; + CFAssay = derive2 { name="CFAssay"; version="1.30.0"; sha256="0cfkkvci9zf08zfgxv6knz00qf89x45g81ifml274y4jg40swcjd"; depends=[]; }; + CGEN = derive2 { name="CGEN"; version="3.32.0"; sha256="1010mi5s82q7v2dwfyn1a65cijxpn9lrjgn5pm5s6blzb8l4s7d4"; depends=[mvtnorm survival]; }; + CGHbase = derive2 { name="CGHbase"; version="1.56.0"; sha256="1q8yy60r4g5nyv2gbfdgk192xd73c0rrjr668d5616ddb7sx8wcr"; depends=[Biobase marray]; }; + CGHcall = derive2 { name="CGHcall"; version="2.58.0"; sha256="1qpsibp4gb09sn6fkwwrdjkh3a28lqfbk18c6fvn4m386j96ps65"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; + CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.50.0"; sha256="16i0i83wd3ibzkj5l5az3jxgsp78i6ragl3yiy3yymvgr9f2z3fz"; depends=[Biobase CGHbase CGHcall]; }; + CGHregions = derive2 { name="CGHregions"; version="1.54.0"; sha256="18k833qpbkyj8ywvgmglcxm3cqaj1ys4ygq7cvnv43d6sm4fi44m"; depends=[Biobase CGHbase]; }; + CHRONOS = derive2 { name="CHRONOS"; version="1.24.0"; sha256="0n1qm5d2xh00v49h91pzqmjyklp1wnf524fbglahh9kxbpq5fh8m"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl rJava XML]; }; + CIMICE = derive2 { name="CIMICE"; version="1.4.0"; sha256="12knj9vz41kbx0jzqw6ah1ils6hsxv5fbnw98mbi3phnr3kl9ih4"; depends=[assertthat dplyr expm ggcorrplot ggplot2 ggraph glue igraph maftools Matrix networkD3 purrr tidygraph tidyr visNetwork]; }; + CINdex = derive2 { name="CINdex"; version="1.24.0"; sha256="1k6wl4y4za85n8pf96x9zj7irmq3glkpyz612wxj1s16whl6wy6s"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; + CMA = derive2 { name="CMA"; version="1.54.0"; sha256="0bl8j1dx153k66vvmhsln1s58jnjfrp6ihfnydsgiq72zqkxhcbz"; depends=[Biobase]; }; + CNAnorm = derive2 { name="CNAnorm"; version="1.42.0"; sha256="1cnf8lj16d1z663ff4k5vfq4bkyj1jims6a6phkjj1sb1zsx3xji"; depends=[DNAcopy]; }; + CNEr = derive2 { name="CNEr"; version="1.32.0"; sha256="05zvr5fv8nprxqh2wvvrlf737dq242i20p1rpyqjaxihl6xl62kq"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; }; + CNORdt = derive2 { name="CNORdt"; version="1.38.0"; sha256="161qhpx6kyn87h1p72mwfpi1pd4ck3cssr4f291axhw99sg6968c"; depends=[abind CellNOptR]; }; + CNORfeeder = derive2 { name="CNORfeeder"; version="1.35.0"; sha256="0z6j6rrlxpijd9vb2n6bgcy82w1w82rrzrhzrx7q9dgphblc7ag9"; depends=[CellNOptR graph]; }; + CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.38.0"; sha256="0qnfvfd2wsmpaggq2amp8n1ry7wgysxysfh97rvrx5ymivbzr18p"; depends=[CellNOptR nloptr]; }; + CNORode = derive2 { name="CNORode"; version="1.38.0"; sha256="0bvlwlf0mm6q3cp2vf87rb7xsha5cz9bk7vsi6ssxngmspiq3kjz"; depends=[CellNOptR genalg knitr]; }; + CNTools = derive2 { name="CNTools"; version="1.52.0"; sha256="1d5ahszdf0brbmhd1vi2l9v1qi8kbpkw2kawcdf3rxibla0756y3"; depends=[genefilter]; }; + CNVMetrics = derive2 { name="CNVMetrics"; version="1.0.0"; sha256="15ihpsr804qrywf968h0zvskcz1w8117hlh6ly5lr30afs4kfq5g"; depends=[BiocParallel GenomicRanges gridExtra IRanges magrittr pheatmap S4Vectors]; }; + CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.28.0"; sha256="1d7srf01ds32nbn2m26nc2bffi59dc2pc9nn5whb7kkgawgbh4a9"; depends=[BiocGenerics exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; + CNVRanger = derive2 { name="CNVRanger"; version="1.12.0"; sha256="08w1nmpvyy302024g6xcb3vi4hr8kspxqx40qs234l6k62xsri4z"; depends=[BiocGenerics BiocParallel data_table edgeR GDSArray gdsfmt GenomeInfoDb GenomicRanges IRanges lattice limma plyr qqman RaggedExperiment rappdirs reshape2 S4Vectors SNPRelate SummarizedExperiment]; }; + CNVfilteR = derive2 { name="CNVfilteR"; version="1.10.0"; sha256="0k10lza9kgkdfy8p3a4iksvs7spdvn1065avji5qgc524cxnpy0f"; depends=[assertthat Biostrings CopyNumberPlots GenomeInfoDb GenomicRanges IRanges karyoploteR pracma regioneR Rsamtools SummarizedExperiment VariantAnnotation]; }; + CNVgears = derive2 { name="CNVgears"; version="1.4.0"; sha256="1n93vbxsb69j302rbbgb10z576hmhm0f8hwjv36xr92chy7x6fya"; depends=[data_table ggplot2]; }; + CNViz = derive2 { name="CNViz"; version="1.4.0"; sha256="062rr0im9dfi7qgkwz3a34m63vd479n9m7d1nlm22fcalym5s08r"; depends=[CopyNumberPlots dplyr DT GenomicRanges karyoploteR magrittr plotly scales shiny]; }; + CNVrd2 = derive2 { name="CNVrd2"; version="1.34.0"; sha256="1mdn5dljl8cw7sax4d0p6pv7kc9li8g3r19yybyhbv7wzh6q350j"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; }; + COCOA = derive2 { name="COCOA"; version="2.10.0"; sha256="0ml09hihkf0drx743a44ff978nn8jgcpf4wchr7zybyj5k52dc11"; depends=[Biobase BiocGenerics ComplexHeatmap data_table fitdistrplus GenomicRanges ggplot2 IRanges MIRA S4Vectors simpleCache tidyr]; }; + CODEX = derive2 { name="CODEX"; version="1.28.0"; sha256="11pq2hym0hhg42pbk59fj0xri12i8mn6qhf3ad182asqh5sngvdp"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; }; + COHCAP = derive2 { name="COHCAP"; version="1.42.0"; sha256="0wy91spx9iv81xqw7kqljhmy2wazpmk8s17bq6ssmybg6yxhdj5j"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; }; + COMPASS = derive2 { name="COMPASS"; version="1.34.0"; sha256="0ib2v9d8bzjykrdfpclzxh27lkj2iaxlvl6z58n44x3kflb4js0w"; depends=[abind BiocStyle clue coda data_table dplyr foreach knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; }; + CONFESS = derive2 { name="CONFESS"; version="1.24.0"; sha256="11k4j21lj27pp6ngf361k1mmq7drnd7xca62jsnrh4h9j00lsmg8"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; }; + CONSTANd = derive2 { name="CONSTANd"; version="1.4.0"; sha256="04lw35r8c979xmzlq7ikf83vficp6rjlrr0iqzs6wlhzj5s0zfpz"; depends=[]; }; + CORREP = derive2 { name="CORREP"; version="1.62.0"; sha256="0lkgnypkpjbx9qhwph1ylijfqcxhjrvkdhlf4i5mpnq9ghpa0a3z"; depends=[e1071]; }; + COSNet = derive2 { name="COSNet"; version="1.30.0"; sha256="1gz1kxjbbigvbgzk1sb3207gxhx70jnd1dfh89xpwsswia9r6laz"; depends=[]; }; + COTAN = derive2 { name="COTAN"; version="1.0.0"; sha256="0rkxz9f13jdm903k8ywrynvrpx4izv662pl0awbclicb1994adpy"; depends=[basilisk circlize ComplexHeatmap dplyr ggplot2 ggrepel Matrix reticulate Rfast rlang scales tibble tidyr]; }; + CRISPRseek = derive2 { name="CRISPRseek"; version="1.36.0"; sha256="1sw4jrq14wnc9v5ybgj3xrmnvh6kf9z6ybvskbx6nm29mz8116z3"; depends=[BiocGenerics Biostrings BSgenome data_table DelayedArray dplyr GenomeInfoDb GenomicRanges hash IRanges keras mltools reticulate rhdf5 S4Vectors seqinr XVector]; }; + CRImage = derive2 { name="CRImage"; version="1.44.0"; sha256="0bf6lk3c04c5l08md43lda2rwj3way79ap259d8cz5yn24dhklf1"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; }; + CSAR = derive2 { name="CSAR"; version="1.48.0"; sha256="0lzdl84d84nf5jjw5cc5lr36pllaw89ci08sn559dsrmvn9c5c1w"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + CSSP = derive2 { name="CSSP"; version="1.34.0"; sha256="0asb29dxhr92cspfq6v0iz8pdhf2j3amrlisjpm9nwhd8nwaxbj0"; depends=[]; }; + CSSQ = derive2 { name="CSSQ"; version="1.8.0"; sha256="1kgadkqjcac127xbaxr38r2icfhdz6y4q1w9xpamj4mjb6d27hq7"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + CTDquerier = derive2 { name="CTDquerier"; version="2.3.1"; sha256="18pxg4qhgf03sq48yp5m0x0jq5y27pbpqqlcvpn2pj09dzx7camc"; depends=[BiocFileCache ggplot2 gridExtra igraph RCurl S4Vectors stringdist stringr]; }; + CancerInSilico = derive2 { name="CancerInSilico"; version="2.16.0"; sha256="1xswflpx055x3lkakbvxaw6q8y4ndrpr9ma1wyia63ghvdnaian0"; depends=[BH Rcpp]; }; + CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.22.0"; sha256="1qgjzbppi5nzw7jvqd0i780fccwz0mf5i6r4shzdnkvszh8q98a7"; depends=[cluster ConsensusClusterPlus iCluster impute limma NMF sigclust survival]; }; + Cardinal = derive2 { name="Cardinal"; version="2.14.0"; sha256="07048rzp4x6593836a9iag8xjq93a94z9zvj6cbp0bj15w3p62r6"; depends=[Biobase BiocGenerics BiocParallel dplyr EBImage irlba lattice magrittr Matrix matter mclust nlme ProtGenerics S4Vectors signal sp viridisLite]; }; + Category = derive2 { name="Category"; version="2.62.0"; sha256="07js03cfdd6gzbzw14iavlqxynfcqszh988v6k1a3h074wxiivqd"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; }; + CausalR = derive2 { name="CausalR"; version="1.28.0"; sha256="1ij6z12a6irbd1hd8nzd01xipmrgrpj7gqm6gp5r3hd7gfdpsway"; depends=[igraph]; }; + CeTF = derive2 { name="CeTF"; version="1.8.0"; sha256="0hs5jk6x6kamajs61122vr39n7x65rx5qk3sfj2lil9r4wlmmc13"; depends=[circlize clusterProfiler ComplexHeatmap DESeq2 dplyr GenomicTools GenomicTools_fileHandler GGally ggnetwork ggplot2 ggpubr ggrepel igraph Matrix network Rcpp RcppArmadillo RCy3 S4Vectors SummarizedExperiment]; }; + CellBarcode = derive2 { name="CellBarcode"; version="1.2.0"; sha256="1xan4ha7aiasch2h1lk7adj2dc3prpmiily1s6pfy0chwj0bi76n"; depends=[Biostrings Ckmeans_1d_dp data_table egg ggplot2 magrittr plyr Rcpp S4Vectors ShortRead stringr]; }; + CellBench = derive2 { name="CellBench"; version="1.12.0"; sha256="1sw3z3n7vdvw2352amc7biz35dmyzx7fhxdmz1jr0gdf0fhwhr1s"; depends=[BiocFileCache BiocGenerics BiocParallel dplyr glue lubridate magrittr memoise purrr rappdirs rlang SingleCellExperiment tibble tidyr tidyselect]; }; + CellMapper = derive2 { name="CellMapper"; version="1.22.0"; sha256="1sz81czvam86am9mrzs3kn4qn0qz6402i7n2bdic7hcchl00qbbd"; depends=[S4Vectors]; }; + CellMixS = derive2 { name="CellMixS"; version="1.12.0"; sha256="06xjxdgmgndc06xvgg1kylnh8248j780r4jbc27hga6jha9jbh1f"; depends=[BiocGenerics BiocNeighbors BiocParallel cowplot dplyr ggplot2 ggridges kSamples magrittr purrr scater SingleCellExperiment SummarizedExperiment tidyr viridis]; }; + CellNOptR = derive2 { name="CellNOptR"; version="1.42.0"; sha256="03p0z6ydw2fphayzzks31kmbsfhys4jis1527c0xw00byf9k6319"; depends=[ggplot2 graph igraph RBGL RCurl Rgraphviz stringi stringr XML]; }; + CellScore = derive2 { name="CellScore"; version="1.16.0"; sha256="11iqs9isggfp5l1sh9ndsrb5f57lhgpspsb5mmzd1vn182bsj3n8"; depends=[Biobase gplots lsa RColorBrewer squash]; }; + CellTrails = derive2 { name="CellTrails"; version="1.14.0"; sha256="11xrkib9ajwsyz608d221r2z0nb67063ssmwd6i2zd4i7vhci5b0"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; }; + CellaRepertorium = derive2 { name="CellaRepertorium"; version="1.6.0"; sha256="0ccx0698rircn5csd56il1v4s0707fhp2b7yidadrn6apv0jyd7b"; depends=[BiocGenerics Biostrings dplyr forcats Matrix progress purrr Rcpp reshape2 rlang S4Vectors stringr tibble tidyr]; }; + CelliD = derive2 { name="CelliD"; version="1.4.0"; sha256="0697cfm9mlxk12acxxz68rng8niavmf42qlrkd8063k9kkzzh01q"; depends=[BiocParallel data_table fastmatch fgsea ggplot2 glue irlba Matrix matrixStats pbapply Rcpp RcppArmadillo reticulate Rtsne scater Seurat SingleCellExperiment stringr SummarizedExperiment tictoc umap]; }; + Cepo = derive2 { name="Cepo"; version="1.2.0"; sha256="08bpddpkagp9yzb65j3caf740vndnk399rm21f32qvbq803y0lp5"; depends=[BiocParallel DelayedArray DelayedMatrixStats dplyr ggplot2 GSEABase HDF5Array patchwork reshape2 rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; + CexoR = derive2 { name="CexoR"; version="1.34.0"; sha256="1sph506rwc4p25ar6km7yvg11aj7clk4bjncnlb75fynrv9zsarw"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; }; + ChAMP = derive2 { name="ChAMP"; version="2.26.0"; sha256="1ck4pn24q222k4bhv4ngimzwyzgkf7a0nw9svhcmv91ys5h4lhhj"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel DT GenomicRanges ggplot2 globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva kpmt limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; }; + ChIC = derive2 { name="ChIC"; version="1.16.0"; sha256="17az2nhccji8qjllvr5adzb8sqr15rhc4lg0iq52gmn6w7f7vrlz"; depends=[BiocGenerics caret caTools ChIC_data genomeIntervals GenomicRanges IRanges progress randomForest Rsamtools S4Vectors spp]; }; + ChIPComp = derive2 { name="ChIPComp"; version="1.26.0"; sha256="06q34y59gf1iz0rs7y5x8ndy1wa95j65rfmz37aym5c46ijqsnq0"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; }; + ChIPQC = derive2 { name="ChIPQC"; version="1.32.0"; sha256="1k713qv2hi9rvms78xypxlgk45icq5fyhsiyg6drabynykx9v3i6"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; }; + ChIPXpress = derive2 { name="ChIPXpress"; version="1.40.0"; sha256="1w8kvpvvwh7bjpk4672060vz0nn6ya0lm40k97grss1i4kmv7zna"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; }; + ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.18.0"; sha256="0vi7qngbyss7h6zzbqv5x31x09pnwkrhxgfsbmhazz6wczmwkcix"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RcppRoll ROCR rtracklayer S4Vectors]; }; + ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.20.0"; sha256="1r4s8awvwwj1g33jpnzfxji23mfy0chkhi14i0ml5sh090xijpaz"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; }; + ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.30.0"; sha256="1ch636j3zd6hcfnl455vjs36wffrdhwzyvkbikcwjg7idiknjdkf"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings DBI dplyr ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 graph InteractionSet IRanges KEGGREST matrixStats multtest RBGL regioneR Rsamtools rtracklayer S4Vectors SummarizedExperiment VennDiagram]; }; + ChIPseeker = derive2 { name="ChIPseeker"; version="1.32.0"; sha256="001f85nk4myk9vgs05inlj2dfby4802p1iyzkfqg332yk52gsbl7"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene]; }; + ChIPseqR = derive2 { name="ChIPseqR"; version="1.50.0"; sha256="09z03ym6iqllj007558pijksjz6bqizrq8r5y1s9f12919szydsv"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; }; + ChIPsim = derive2 { name="ChIPsim"; version="1.50.0"; sha256="1rjh61721pxm3r0zh1jpk65f2ll7yyhk7d92hvp4hjmq8283xwsh"; depends=[Biostrings IRanges ShortRead XVector]; }; + ChemmineOB = derive2 { name="ChemmineOB"; version="1.34.0"; sha256="1cxblrisvqmrng5zvsm2x9g2rjl088s9jmrxxapgbf5zxdv1h1lb"; depends=[BH BiocGenerics Rcpp zlibbioc]; }; + ChemmineR = derive2 { name="ChemmineR"; version="3.48.0"; sha256="1nri4zkc9lp1mqgsi0h58486vixwiv2989b6pmx2aj5c3575i0ma"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra jsonlite png Rcpp RCurl rjson rsvg stringi]; }; + Chicago = derive2 { name="Chicago"; version="1.24.0"; sha256="13vzxmvxpc3r9gii37zvhhr5nbnaggrva97g6m2n02qn9daf6vmm"; depends=[data_table Delaporte Hmisc MASS matrixStats]; }; + ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.50.0"; sha256="1k7w5dlq5wa87rnqizvpr1pj3dx4l1ja6fls0691793ag337av0l"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; }; + ChromSCape = derive2 { name="ChromSCape"; version="1.6.0"; sha256="0hvk0lpslmlbim3dlr8rngp6ggr8chn2wbx344mf71hy48qyvarh"; depends=[batchelor BiocParallel colorRamps colourpicker ConsensusClusterPlus coop DelayedArray dplyr DT edgeR forcats fs GenomicRanges gggenes ggplot2 ggrepel gridExtra IRanges irlba jsonlite kableExtra Matrix matrixTests msigdbr plotly qs qualV Rcpp rlist Rsamtools rtracklayer Rtsne S4Vectors scater scran shiny shinycssloaders shinydashboard shinydashboardPlus shinyFiles shinyhelper shinyjs shinyWidgets SingleCellExperiment stringdist SummarizedExperiment tibble tidyr umap viridis]; }; + CiteFuse = derive2 { name="CiteFuse"; version="1.8.0"; sha256="19l1splp6364wfmddxxpj2zlq30frglzcrfs3xhkrai2yfx2cnmy"; depends=[cowplot dbscan ggplot2 ggraph ggridges gridExtra igraph Matrix mixtools pheatmap propr randomForest reshape2 rhdf5 rlang Rtsne S4Vectors scales scran SingleCellExperiment SummarizedExperiment uwot]; }; + ClassifyR = derive2 { name="ClassifyR"; version="3.0.2"; sha256="1x9bdx5jrdx0d1n3mlf1n67z39y4nr4izzw80fi62rgbfyb1pl8k"; depends=[BiocParallel dplyr MultiAssayExperiment randomForest rlang S4Vectors survival tidyr]; }; + Clomial = derive2 { name="Clomial"; version="1.32.0"; sha256="0l1z45yp02hqjrrbyggk78fcm8g25sgdqsy4z2s4b2phrjh8nlc2"; depends=[matrixStats permute]; }; + Clonality = derive2 { name="Clonality"; version="1.44.0"; sha256="08z691r97krlzxwzcfhqkcpjwiacdxlfds1g4nzzi680zmvrdb4n"; depends=[DNAcopy]; }; + CluMSID = derive2 { name="CluMSID"; version="1.12.0"; sha256="0g9ml6dw5flcjlqjr4y33dy17hz2g9r7kavhywzgzh4167ppi0vh"; depends=[ape Biobase dbscan GGally ggplot2 gplots MSnbase mzR network plotly RColorBrewer S4Vectors sna]; }; + ClusterJudge = derive2 { name="ClusterJudge"; version="1.18.0"; sha256="0aw6dpqb8ky6in6a7is6fjjhng74vzqfirrvx4f7pvhj3hcmq22i"; depends=[httr infotheo jsonlite lattice latticeExtra]; }; + ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.24.0"; sha256="1njqcwlbxfb0xc9jyxli3hyq5fjivvhklhvxqcr4aqg9as577qad"; depends=[pracma princurve RColorBrewer scatterplot3d]; }; + CoCiteStats = derive2 { name="CoCiteStats"; version="1.68.0"; sha256="1agaxkxzgxfz7ycyjdmkfm1r21lhamkm7y7k7nxqkwpdz8rxg45y"; depends=[AnnotationDbi org_Hs_eg_db]; }; + CoGAPS = derive2 { name="CoGAPS"; version="3.16.0"; sha256="0ssq59pz0jfdpzj5dhh5bri6iffalhrgvl330v0q0zbj854fagm3"; depends=[BH BiocParallel cluster gplots RColorBrewer Rcpp rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + CoRegNet = derive2 { name="CoRegNet"; version="1.34.0"; sha256="16vqv6nc59jwyprhbwvlcmzya3837kimaplj0h09qmch9dr50yrb"; depends=[arules igraph shiny]; }; + Cogito = derive2 { name="Cogito"; version="1.2.0"; sha256="0sahx7cdqqnpzwb0164c84xwr246aiv4jdv9b07mw3k4s45z3h37"; depends=[AnnotationDbi BiocManager entropy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 jsonlite magrittr rmarkdown S4Vectors TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + ComPrAn = derive2 { name="ComPrAn"; version="1.4.0"; sha256="0wwx025sv07h4xf3nvvqijvyca5mwdb8vsb8kvp4g0rxngc6jm30"; depends=[data_table dplyr DT forcats ggplot2 magrittr purrr RColorBrewer rio rlang scales shiny shinydashboard shinyjs stringr tibble tidyr VennDiagram]; }; + ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="2.12.0"; sha256="15b49vlkl89prcw70mlw066z0gxhs26x8dpfn6qr3gz7hihygs65"; depends=[circlize clue codetools colorspace digest doParallel foreach GetoptLong GlobalOptions IRanges matrixStats png RColorBrewer]; }; + CompoundDb = derive2 { name="CompoundDb"; version="1.0.0"; sha256="0wgr6srhqd4gc97gxzk1np0y1pxa0sc01jsj34favmrvkryhh15j"; depends=[AnnotationFilter Biobase BiocGenerics ChemmineR DBI dbplyr dplyr IRanges jsonlite MetaboCoreUtils MsCoreUtils ProtGenerics RSQLite S4Vectors Spectra tibble xml2]; }; + ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.60.0"; sha256="1021cix4mr9qsafskw4kk1l3wdzx9pk2gcwjifz6f4zqxss9v07p"; depends=[ALL Biobase cluster]; }; + CopyNumberPlots = derive2 { name="CopyNumberPlots"; version="1.12.0"; sha256="01sxmgsjrwhg8j7gckmcjwjy0yfbhw2rnww8z4hk0ig5vcb8g778"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges karyoploteR regioneR rhdf5 Rsamtools SummarizedExperiment VariantAnnotation]; }; + CopywriteR = derive2 { name="CopywriteR"; version="2.28.0"; sha256="1k11kvam96hpg71hz2n9cfzizmb7d1bmq5zfvm34s7fn09is60xb"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; + CoreGx = derive2 { name="CoreGx"; version="2.0.0"; sha256="07p7za3qglwpsr6pvgjwcnwqzvd7v1rdnl55bqg0h5q893agz91i"; depends=[Biobase BiocGenerics BiocParallel BumpyMatrix checkmate crayon data_table glue lsa MatrixGenerics MultiAssayExperiment piano rlang S4Vectors SummarizedExperiment]; }; + Cormotif = derive2 { name="Cormotif"; version="1.42.0"; sha256="0ww39z987ig23sn9w2m7jd6rv3njiyslnzcxxzi6gbqy0dax8n93"; depends=[affy limma]; }; + CoverageView = derive2 { name="CoverageView"; version="1.34.0"; sha256="0mh66l4yh6rpd1r7qbqwh5jkklqyvpfiap0zcqhz9kimssm2pbbp"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; + CrispRVariants = derive2 { name="CrispRVariants"; version="1.24.0"; sha256="05hb0z6zmi6vxn11l5cih7ja92362v6idzwiwjk67dk4rrk273va"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; + CyTOFpower = derive2 { name="CyTOFpower"; version="1.2.0"; sha256="0dkz6wihnlvmrbjvw1rigcm5mff9vds0izqhcr4507cmvclw6984"; depends=[CytoGLMM diffcyt dplyr DT ggplot2 magrittr rlang shiny shinyFeedback shinyjs shinyMatrix SummarizedExperiment tibble tidyr]; }; + CytoDx = derive2 { name="CytoDx"; version="1.16.0"; sha256="0rk3ksgycwxagkyvl3qm0sbcrzjwlmll9mrhiwyj6n3divw2qg81"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; }; + CytoGLMM = derive2 { name="CytoGLMM"; version="1.4.0"; sha256="04k9gz1rbz2rkkdcn1g1ya6dcjslk4h8427dmy9mkz58nvyjg1ya"; depends=[BiocParallel caret cowplot doParallel dplyr factoextra flexmix ggplot2 ggrepel logging magrittr MASS Matrix mbest pheatmap RColorBrewer rlang speedglm stringr strucchange tibble tidyr]; }; + CytoML = derive2 { name="CytoML"; version="2.8.0"; sha256="0vp7advfh1d8596hjpzayasjhga4mx0l104sgz2asscbrjm4v7rr"; depends=[base64enc BH Biobase corpcor cytolib data_table dplyr flowCore flowWorkspace ggcyto graph jsonlite lattice openCyto plyr RBGL Rcpp RcppArmadillo RcppParallel Rgraphviz Rhdf5lib RProtoBufLib RUnit tibble XML xml2 yaml]; }; + CytoTree = derive2 { name="CytoTree"; version="1.6.0"; sha256="1dsdhwjkd3ngnw50fs6vz048afk47r95vhi0wqj8sip11nhndkd8"; depends=[Biobase BiocNeighbors cluster destiny flowCore FlowSOM flowUtils ggplot2 gmodels igraph limma Matrix matrixStats mclust pheatmap prettydoc RANN Rcpp Rtsne scatterpie scatterplot3d stringr sva umap]; }; + DAMEfinder = derive2 { name="DAMEfinder"; version="1.8.0"; sha256="123ra94bij0m45j2fzqr7fjipj4ld9kgk0kir1zfdbbd5h8h4mdf"; depends=[BiocGenerics Biostrings bumphunter cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges limma plyr readr reshape2 Rsamtools S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; + DAPAR = derive2 { name="DAPAR"; version="1.28.0"; sha256="1349wcfn6bnsbjilkb3flidi1xklqi96rx6yf8f0gy8d4fxb433c"; depends=[Biobase Cairo cp4p DAPARdata dplyr ggplot2 gplots graph highcharter igraph imp4p impute knitr lattice limma lme4 Matrix MSnbase norm pcaMethods png preprocessCore RColorBrewer reshape2 scales siggenes stringr tibble tidyr tidyverse tmvtnorm]; }; + DART = derive2 { name="DART"; version="1.44.0"; sha256="105f3awf9dxkmrqgxjqzsragvhavfnygzgggi0mgq330ybmmp1as"; depends=[igraph]; }; + DECIPHER = derive2 { name="DECIPHER"; version="2.24.0"; sha256="045q2bfzgq1yzhyrzvrhrnmlpka4gikrajxxwv05szksy5nvp7q5"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; }; + DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.16.0"; sha256="09a967x1rnv7byjwh29ngjhs67rgg27zblmlzx6pyqlwy5jsp89d"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; }; + DEFormats = derive2 { name="DEFormats"; version="1.24.0"; sha256="1y6z5zvqmcrsl184skmlryi27s6511xas0nr117mz1g7skd5j2f4"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; }; + DEGraph = derive2 { name="DEGraph"; version="1.48.0"; sha256="0jdz7snssfiq9rv48irqsxzsgw9j0276wgvp61fpp37av4hp1dh2"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; }; + DEGreport = derive2 { name="DEGreport"; version="1.32.0"; sha256="0lgz1zyy3dn1nhjkn9sp0bs6psrnvkli74y1aixrmq8wmq8dq526"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr lasso2 logging magrittr Nozzle_R1 psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; }; + DEGseq = derive2 { name="DEGseq"; version="1.50.0"; sha256="1pjyxhfbm03dmq2hlh2ndr9hr9q8mc5skyraywnhk7spa59vz11f"; depends=[qvalue]; }; + DEP = derive2 { name="DEP"; version="1.18.0"; sha256="019brs6jspc32ax6gj0l9kqi2ih79jsgwin4akfl80pyz83rr7j6"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; }; + DEScan2 = derive2 { name="DEScan2"; version="1.16.0"; sha256="0hqj9vp8pqfn75yzn3njfns4ls5fvryk483fn2qfmh30cf38flsn"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; }; + DESeq2 = derive2 { name="DESeq2"; version="1.36.0"; sha256="06mvb0jqn2fg96wfwspv0kzpa8xpimzaldrcy8m2d4yk76xwsdr7"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; }; + DEWSeq = derive2 { name="DEWSeq"; version="1.10.0"; sha256="138j21nph0nzn69qs1gqpwqv6hx3a75rbm5k8p5xaaii3jr5jf1w"; depends=[BiocGenerics BiocParallel data_table DESeq2 GenomeInfoDb GenomicRanges R_utils S4Vectors SummarizedExperiment]; }; + DEXSeq = derive2 { name="DEXSeq"; version="1.42.0"; sha256="1dzx9mvm8pvcrwr88rin3flnpmzp3vq8mvspx9s8virqhv1102am"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; }; + DEqMS = derive2 { name="DEqMS"; version="1.14.0"; sha256="04b35mhsz87dfj53clgxrb7igkyv41hqmblb4429l68l55wsxhp6"; depends=[ggplot2 limma matrixStats]; }; + DEsingle = derive2 { name="DEsingle"; version="1.16.0"; sha256="0gw2zbq910jnn1pdpc5sgvvfmvg06hximz1qnvvmv9pb8g68r0zk"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; }; + DEsubs = derive2 { name="DEsubs"; version="1.22.0"; sha256="06vjby0wpaczaw9bj2g2inylfnw92acrqgpadr70q458v1kpshs5"; depends=[circlize DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; }; + DExMA = derive2 { name="DExMA"; version="1.4.0"; sha256="00njmrb78qpadf5rwcfiigvzchvha7ql9qdm4w1p0c1vbfp13f2l"; depends=[Biobase bnstruct DExMAdata GEOquery impute limma pheatmap plyr scales snpStats sva swamp]; }; + DFP = derive2 { name="DFP"; version="1.54.0"; sha256="19xjvfymjclnd0ck7n7al3f54s7f8z3aszi35i0cavr7xj3cgrj5"; depends=[Biobase]; }; + DIAlignR = derive2 { name="DIAlignR"; version="2.4.0"; sha256="0mh27n8vsnsv10mq8jcslspyq86sfvwwgn8iib5w3f7qb47w5d7r"; depends=[ape bit64 data_table DBI dplyr ggplot2 magrittr mzR phangorn pracma Rcpp RcppEigen reticulate rlang RMSNumpress RSQLite signal tidyr zoo]; }; + DMCFB = derive2 { name="DMCFB"; version="1.10.0"; sha256="0wka5s820k0vfw87dfycnkbr3c41wm4rmylwnkm8c0azjda8n126"; depends=[arm benchmarkme BiocParallel data_table fastDummies GenomicRanges IRanges MASS matrixStats rtracklayer S4Vectors speedglm SummarizedExperiment tibble]; }; + DMCHMM = derive2 { name="DMCHMM"; version="1.18.0"; sha256="146b7568ckgcwg1r7gh6802vbfnha8a2b0kssxa4hf8vfd61a7mj"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; + DMRScan = derive2 { name="DMRScan"; version="1.18.0"; sha256="0gmfmmg7hs4qkinkypcxnk5ixylz47hb0z5x9pyd7jx3pldpld3m"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; + DMRcaller = derive2 { name="DMRcaller"; version="1.28.0"; sha256="12rdw3l2vjms6z9n7nlljnaf91hkfcvyv3f1vjsxkdvl91kj6arn"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; + DMRcate = derive2 { name="DMRcate"; version="2.10.0"; sha256="0l0fz89x1nxjszsdz9zdqrdz8jn9w22c3fasz3ach75fawfdznjv"; depends=[bsseq DSS edgeR ExperimentHub GenomeInfoDb GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors SummarizedExperiment]; }; + DMRforPairs = derive2 { name="DMRforPairs"; version="1.32.0"; sha256="14z01pnvg3v15cmdgrb216hc7yz2wkpb6dqj7a4bsrfqpbjy021s"; depends=[GenomicRanges Gviz R2HTML]; }; + DNABarcodeCompatibility = derive2 { name="DNABarcodeCompatibility"; version="1.12.0"; sha256="07q6grnzpb5mmqidkd6dv95jflvxzzzvdyw5591is05px7if96q4"; depends=[DNABarcodes dplyr numbers purrr stringr tidyr]; }; + DNABarcodes = derive2 { name="DNABarcodes"; version="1.26.0"; sha256="0n2qlvpcjhrxr3br27gz9vhwcpf7sn6g4xdjazvvi3gqcgk90xc6"; depends=[BH Matrix Rcpp]; }; + DNAcopy = derive2 { name="DNAcopy"; version="1.70.0"; sha256="10bh4p8nbl84rfngsm3bi9w542m159kff95f8c2hvjcxv5yw7iwc"; depends=[]; }; + DNAshapeR = derive2 { name="DNAshapeR"; version="1.24.0"; sha256="0qayysdkifa7dpin6a64zqp0mfvfxj2z0g1vcp757jci2w903b6g"; depends=[Biostrings fields GenomicRanges Rcpp]; }; + DOSE = derive2 { name="DOSE"; version="3.22.0"; sha256="11lg4ql0bi54p2wg3z1dw9rwqai37khgcqbs4cb7zf67ml8jadwp"; depends=[AnnotationDbi BiocParallel DO_db fgsea ggplot2 GOSemSim qvalue reshape2]; }; + DRIMSeq = derive2 { name="DRIMSeq"; version="1.24.0"; sha256="1dph483ij43ayw0z5dbnp6gwp53ka7k5si1hp3miac7z8dqzv94l"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; }; + DSS = derive2 { name="DSS"; version="2.44.0"; sha256="12l5b3h9jd2ld6g4vncxy70a8vfi37byl5k85ix61ir0rbcqf6jn"; depends=[Biobase BiocParallel bsseq matrixStats]; }; + DTA = derive2 { name="DTA"; version="2.42.0"; sha256="13x7z2zgxcnz8lpgdnsm5rp6j8yj6fkm03amymlnzihrqjdjpzw4"; depends=[LSD scatterplot3d]; }; + DaMiRseq = derive2 { name="DaMiRseq"; version="2.8.0"; sha256="1lyj8ic87bh8bwwm64rc5wj6sargf81x4x8bilff0gisq35w981g"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel plyr randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; }; + DeMAND = derive2 { name="DeMAND"; version="1.26.0"; sha256="0dwn6p24gc4ix8258w8xvc32ldhh6w3q4drzmm7nwacfk9rjqi93"; depends=[KernSmooth]; }; + DeMixT = derive2 { name="DeMixT"; version="1.12.0"; sha256="11x6s6dsnh05l853218b2528adjdy4pbgf95jclibz9gx5nf4hnf"; depends=[base64enc ggplot2 KernSmooth knitr matrixcalc matrixStats Rcpp rmarkdown SummarizedExperiment truncdist]; }; + DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.38.0"; sha256="10smk88srxm58hli0fhkdfd6l5z02q58xc9mww39gkn71y0127k6"; depends=[ggplot2 limSolve pcaMethods]; }; + DeepBlueR = derive2 { name="DeepBlueR"; version="1.22.0"; sha256="19mxag9pzaa4bsh9plq4zrky3fpai6rangi01p6yrkxpjnnhrwqq"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; }; + DeepPINCS = derive2 { name="DeepPINCS"; version="1.4.0"; sha256="06kxdw1cl2i3jqyfsk3cxppdhqcdmqqfisqn7pyidacjwjm16rvg"; depends=[CatEncoders keras matlab PRROC purrr rcdk reticulate stringdist tensorflow tokenizers ttgsea webchem]; }; + DegNorm = derive2 { name="DegNorm"; version="1.6.0"; sha256="18g7y17dcw4z89d7nhclldgxf9v4q7cw3dwi1m6anfg46zbdpc9x"; depends=[data_table doParallel foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges plotly plyr Rcpp RcppArmadillo Rsamtools S4Vectors viridis]; }; + DelayedArray = derive2 { name="DelayedArray"; version="0.22.0"; sha256="11id63qza9dxl1364gllqafxmx25a0q22jv5q8h709bgc3f0grqy"; depends=[BiocGenerics IRanges Matrix MatrixGenerics S4Vectors]; }; + DelayedDataFrame = derive2 { name="DelayedDataFrame"; version="1.12.0"; sha256="1nja5h0vxl2i34dhag7gyjdhyaisqagn11004i65pwbx5fmwq58d"; depends=[BiocGenerics DelayedArray S4Vectors]; }; + DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.18.0"; sha256="1qlwv69c0r2w3zkmsr8r7w6sr3hf1ha0sfcrsjx4ks8f0ww7aqsv"; depends=[DelayedArray IRanges Matrix MatrixGenerics matrixStats S4Vectors sparseMatrixStats]; }; + DelayedRandomArray = derive2 { name="DelayedRandomArray"; version="1.4.0"; sha256="13g4dfsv4d5fdp8flxy7p7sc5l9jiby97zixpkda8q1smg2ggr93"; depends=[BH DelayedArray dqrng Rcpp]; }; + DelayedTensor = derive2 { name="DelayedTensor"; version="1.2.0"; sha256="1paciar5cm61gx894awwxb7gzqnyiwmsfinfijff2qx210l0yz51"; depends=[BiocSingular DelayedArray DelayedRandomArray einsum HDF5Array irlba Matrix rTensor]; }; + DepInfeR = derive2 { name="DepInfeR"; version="1.0.0"; sha256="03qvgk20dgxa95gkv2ya2dibiwshda3ssl5f95x5nn06lfgzk6m0"; depends=[BiocParallel glmnet matrixStats]; }; + DepecheR = derive2 { name="DepecheR"; version="1.12.0"; sha256="0rixczdds5gpac50wap6s68kmpdj4208l38gcihkrysz5frbvqjp"; depends=[beanplot doSNOW dplyr FNN foreach ggplot2 gmodels gplots MASS matrixStats mixOmics moments Rcpp RcppEigen reshape2 robustbase viridis]; }; + DiffBind = derive2 { name="DiffBind"; version="3.6.0"; sha256="0c8hqmhyy0f88x9z2f29s275643b1x59i41cq91640lbs4rwvhrs"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; }; + DiffLogo = derive2 { name="DiffLogo"; version="2.20.0"; sha256="08dr3ah0gakdkv133ipw1ib2w1p84hild0s4y9kp8z51qg0zk7mn"; depends=[cba]; }; + DifferentialRegulation = derive2 { name="DifferentialRegulation"; version="1.0.0"; sha256="05x2wdmk4lifkm2051my04gprmicijnpmz561qqx6z9903phswdi"; depends=[BANDITS data_table doParallel doRNG foreach MASS Matrix Rcpp RcppArmadillo SingleCellExperiment SummarizedExperiment]; }; + Dino = derive2 { name="Dino"; version="1.2.0"; sha256="1rcll2y034v1n183v819brazr6crr73klp8qmkq51p7jpsvx1450"; depends=[BiocParallel BiocSingular Matrix matrixStats S4Vectors scran Seurat SingleCellExperiment SummarizedExperiment]; }; + Director = derive2 { name="Director"; version="1.22.0"; sha256="1s6yg90ai37cvkqq7gs394bxd70l85mgz36y6gyjv1bzbc298am8"; depends=[htmltools]; }; + DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.38.0"; sha256="15l0h2qz80lmrm5rva3v7lkgddn42igyxxwims57zwpwyhrk9bmx"; depends=[BiocGenerics IRanges S4Vectors]; }; + DiscoRhythm = derive2 { name="DiscoRhythm"; version="1.12.0"; sha256="1ld3515clkmxnwyn3z44n7h1bsk3qyxlf0v0fybv5k78rmkrjamv"; depends=[BiocGenerics BiocStyle broom data_table dplyr DT ggExtra ggplot2 gridExtra heatmaply kableExtra knitr magick matrixStats matrixTests MetaCycle plotly reshape2 rmarkdown S4Vectors shiny shinyBS shinycssloaders shinydashboard shinyjs SummarizedExperiment UpSetR VennDiagram viridis zip]; }; + DominoEffect = derive2 { name="DominoEffect"; version="1.16.0"; sha256="0iyd3my4kqs2cj284gym59ldq49jhga67z95qwsh1kyjapqiqjz9"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; + Doscheda = derive2 { name="Doscheda"; version="1.18.0"; sha256="116s7s81yxkc0igfy79fqbn6wn1mvd73c5qx1g86vc1mss3nw7k0"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; + DriverNet = derive2 { name="DriverNet"; version="1.36.0"; sha256="0lpcmx02xnmxrnkwssjgb9pd7jmshkpqslama920d905lrxydp9c"; depends=[]; }; + DropletUtils = derive2 { name="DropletUtils"; version="1.16.0"; sha256="1zq8yhix70a63piffia228zbia9nrzv85lga77flix4p836qmcww"; depends=[beachmat BH BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dqrng edgeR GenomicRanges HDF5Array IRanges Matrix R_utils Rcpp rhdf5 Rhdf5lib S4Vectors scuttle SingleCellExperiment SummarizedExperiment]; }; + DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.38.0"; sha256="0q1k4pjfl7nvb1g97iraqfan59idwwp0775ndk99qv8lcmnn032h"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; }; + Dune = derive2 { name="Dune"; version="1.8.0"; sha256="0xbhbjjhh82k7vblb3b2afxyiqqi17l225zwsycjqpvb2bqpybpc"; depends=[aricode BiocParallel dplyr gganimate ggplot2 magrittr purrr RColorBrewer SummarizedExperiment tidyr]; }; + DynDoc = derive2 { name="DynDoc"; version="1.74.0"; sha256="0yqidldl1n93wcdr7n6k18hy602r04b2plkblcvbvi0rlpwcggxi"; depends=[]; }; + EBImage = derive2 { name="EBImage"; version="4.38.0"; sha256="1vcx45bw36k9daw9dywj5bz77jmqk4gjfwsym8ajjnc1jmlq20si"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; }; + EBSEA = derive2 { name="EBSEA"; version="1.24.0"; sha256="104534fl41p9qwi2md78prw4wdzd0c309j3pvq225z4n38fzs8gp"; depends=[DESeq2 EmpiricalBrownsMethod]; }; + EBSeq = derive2 { name="EBSeq"; version="1.36.0"; sha256="192xl9fwsh04w563yk33mfl303d1kqby2ssbqkckqsdr4jb7d57y"; depends=[blockmodeling gplots testthat]; }; + EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.30.0"; sha256="0530imykm1lpisa1ksmw5kdndjxcnj2nyvca6zpjfqw3wdj0s24q"; depends=[EBSeq]; }; + EBarrays = derive2 { name="EBarrays"; version="2.60.0"; sha256="027zarnpxpdnyl877swp5ypxj7zvq0cjp2q2xs6g6yn5dpqjvxxk"; depends=[Biobase cluster lattice]; }; + EBcoexpress = derive2 { name="EBcoexpress"; version="1.40.0"; sha256="07rkar9yh06z3i7v4din5bwpy34a01xdj78sm3r4k64z4xh4zglp"; depends=[EBarrays mclust minqa]; }; + EDASeq = derive2 { name="EDASeq"; version="2.30.0"; sha256="1qnpbmhxvqsma7ihi6yp3ad962xcanlxald84k2szh011ipxj7ws"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics BiocManager biomaRt Biostrings GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; }; + EGAD = derive2 { name="EGAD"; version="1.24.0"; sha256="1w8pfkb9capppb3m2fhhy84s1aghf5vp90zlmlnb0mmvxcs6i7im"; depends=[Biobase GEOquery gplots igraph impute limma MASS plyr RColorBrewer RCurl zoo]; }; + EGSEA = derive2 { name="EGSEA"; version="1.24.0"; sha256="09z5247djg4yif8kvkzqady85r7k7xnls7n3hmpjld6rxb00qyrn"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; }; + ELMER = derive2 { name="ELMER"; version="2.20.0"; sha256="1zffwm9m7mixnfc912f0g4qvnzljr9d13zrfg7c38p35qlkdi2wp"; depends=[biomaRt circlize ComplexHeatmap DelayedArray doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr progress purrr readr reshape reshape2 rmarkdown rtracklayer rvest S4Vectors scales stringr SummarizedExperiment TCGAbiolinks tibble tidyr xml2]; }; + EMDomics = derive2 { name="EMDomics"; version="2.26.0"; sha256="14mn3p3mq0hcgr5ynf2jq09y7y1sykcq86hpsnbhgq56gf2v3gzg"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; }; + ENmix = derive2 { name="ENmix"; version="1.32.0"; sha256="09lznn1ajlpn3rr9gcs9v8c370cdk1gcfjpb1cmp68gc22333ql7"; depends=[AnnotationHub Biobase doParallel dynamicTreeCut ExperimentHub foreach genefilter geneplotter gplots gtools illuminaio impute IRanges matrixStats minfi preprocessCore quadprog RPMM S4Vectors SummarizedExperiment]; }; + ERSSA = derive2 { name="ERSSA"; version="1.14.0"; sha256="0g06svlww704z65jk9w747gs8jv6h75b9d096an0qi5zqp2s1lh4"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; }; + EWCE = derive2 { name="EWCE"; version="1.4.0"; sha256="19mq43s0rfzgy793cf7l5a4vgss3s2l0nhnsfgdsrxv4gy6nfgnq"; depends=[BiocParallel data_table DelayedArray dplyr ewceData ggplot2 HGNChelper limma Matrix orthogene reshape2 RNOmni SingleCellExperiment stringr SummarizedExperiment]; }; + EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.24.0"; sha256="04r9fcxaqajhzdbjhi9dhv8pppqlprc0g5h2spf0d798if51f2ck"; depends=[]; }; + EnMCB = derive2 { name="EnMCB"; version="1.8.0"; sha256="1xksk71w3bywbkqyx7ypnz0r5xz6vp0ln43k83dfyaw71r4fyxzm"; depends=[BiocFileCache boot e1071 ggplot2 glmnet igraph Matrix mboost rms survival survivalROC survivalsvm]; }; + EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.14.0"; sha256="1ghsmfyhb2wa6vm5zhpjxcbmlnwhccahjajgpccbn85lq2203lz2"; depends=[ggplot2 ggrepel]; }; + EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.26.0"; sha256="1960amh4pwnim6didgjqp6f3456ddndcsz2ghvpc0pv8v832phnl"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; + EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.26.0"; sha256="1bqq2jhlqm1vykrlr65z7yrvai406wymhrz0kallyhvgqwjbzwl3"; depends=[AnnotationDbi BiocFileCache BiocManager edgeR GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma pathview Rgraphviz S4Vectors safe SPIA SummarizedExperiment]; }; + EpiCompare = derive2 { name="EpiCompare"; version="1.0.0"; sha256="0ca4xh0slzhdbji5ffqgjvd9vgaypmgl412vksc8n1jg6q7zx0xm"; depends=[AnnotationHub BRGenomics ChIPseeker clusterProfiler dplyr genomation GenomicRanges ggplot2 IRanges magrittr org_Hs_eg_db plotly plyranges reshape2 rmarkdown rtracklayer S4Vectors stringr tidyr UpSetR]; }; + EpiDISH = derive2 { name="EpiDISH"; version="2.12.0"; sha256="020jimk1qy6r62z6pibsi9nyjxpfw0ikn1h136pn13b42rrrmjk4"; depends=[e1071 locfdr MASS Matrix matrixStats quadprog stringr]; }; + EpiTxDb = derive2 { name="EpiTxDb"; version="1.8.0"; sha256="12xa3h1j7jp1h27dz7hqfsbx3h4p76r5fm1bvspf52w8823qwpds"; depends=[AnnotationDbi BiocFileCache BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges httr IRanges Modstrings RSQLite S4Vectors tRNAdbImport xml2]; }; + EventPointer = derive2 { name="EventPointer"; version="3.3.1"; sha256="1nykyh45fasdy9m67f2m6kb6f73ycz4al10gfwcqv5694zp3vvrl"; depends=[abind affxparser Biostrings BSgenome cobs doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges glmnet graph igraph IRanges iterators limma lpSolve MASS Matrix matrixStats nnls poibin prodlim qvalue RBGL rhdf5 S4Vectors SGSeq speedglm stringr SummarizedExperiment tximport]; }; + ExCluster = derive2 { name="ExCluster"; version="1.14.0"; sha256="1vxkhll9zmv4w13xhazhmpbfjsc47g4sz2hizci491hyh41yq4jx"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; }; + ExiMiR = derive2 { name="ExiMiR"; version="2.38.0"; sha256="06k8f62c9ssbmqgx2gyxhy5cx8mryx3d5mzrwjlq35jbnnvdqn8c"; depends=[affy affyio Biobase limma preprocessCore]; }; + ExperimentHub = derive2 { name="ExperimentHub"; version="2.4.0"; sha256="11hna8vrm1az1zk7pw2dv0wh84sd0hw2bi55w40hqvs36csb7lkl"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocManager curl rappdirs S4Vectors]; }; + ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.22.0"; sha256="07n2igb5sva2l323d7p1xqd7520a4fpfan4y5q0l2nr8f3azgfdy"; depends=[AnnotationHubData BiocGenerics BiocManager curl DBI ExperimentHub httr S4Vectors]; }; + ExperimentSubset = derive2 { name="ExperimentSubset"; version="1.6.0"; sha256="0j4qhqpgh925yjgc2cbrqh0vfc0wih4hvva4645cwmrd3hb09hzf"; depends=[Matrix S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment TreeSummarizedExperiment]; }; + ExploreModelMatrix = derive2 { name="ExploreModelMatrix"; version="1.8.0"; sha256="152m93d0z4z5wksfbizly7dsr7v9a6c4qar540swcr4qba39p6mm"; depends=[cowplot dplyr DT ggplot2 limma magrittr MASS rintrojs S4Vectors scales shiny shinydashboard shinyjs tibble tidyr]; }; + ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.24.0"; sha256="0m9hjxdlndr00zqv8xh817n9bnf49smgdw0jc48i6rlmpnr3namx"; depends=[Biobase httr limma S4Vectors SummarizedExperiment XML xml2]; }; + FCBF = derive2 { name="FCBF"; version="2.4.0"; sha256="0kymmx151f0n42h6b8m07y3fir95a29bf76hskkbix18x62ak570"; depends=[ggplot2 gridExtra mclust pbapply SummarizedExperiment]; }; + FEAST = derive2 { name="FEAST"; version="1.4.0"; sha256="050m7l8wm5c9gzj5m9pd472l29affj5zzwgnjscb4gi9albhbs1r"; depends=[BiocParallel irlba matrixStats mclust SC3 SingleCellExperiment SummarizedExperiment TSCAN]; }; + FELLA = derive2 { name="FELLA"; version="1.16.0"; sha256="0j7h8xaxa0wkpbfwq17qgsp3rn45fkjv4fc3ca01y1kvj219a3vw"; depends=[igraph KEGGREST Matrix plyr]; }; + FGNet = derive2 { name="FGNet"; version="3.30.0"; sha256="10v82y7gmxxq1drw1w51r175ada5igy1ixj2m6y6kk8xldiy1ngr"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; }; + FISHalyseR = derive2 { name="FISHalyseR"; version="1.30.0"; sha256="12qrqh9xm3zd2wlkda4n3h4v057hq3bgqzz8z25wnhxil6qyqb43"; depends=[abind EBImage]; }; + FLAMES = derive2 { name="FLAMES"; version="1.2.0"; sha256="0k5bz895lc7z6w49drckzmr0n413lqafyfqdwjc9zyqf0yaqxfnx"; depends=[bambu basilisk BiocGenerics Biostrings circlize ComplexHeatmap cowplot dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 gridExtra igraph magrittr Matrix RColorBrewer Rcpp reticulate Rhtslib Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment stringr SummarizedExperiment tidyr withr zlibbioc]; }; + FRASER = derive2 { name="FRASER"; version="1.8.0"; sha256="0qbysjhii7kq43c10zzjnky5dbcqa564mjk1pxf5ga16143zixd9"; depends=[AnnotationDbi BBmisc Biobase BiocGenerics BiocParallel biomaRt BSgenome cowplot data_table DelayedArray DelayedMatrixStats extraDistr generics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel HDF5Array IRanges matrixStats OUTRIDER pcaMethods pheatmap plotly PRROC R_utils RColorBrewer Rcpp RcppArmadillo rhdf5 Rsamtools Rsubread S4Vectors SummarizedExperiment tibble VGAM]; }; + FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.32.0"; sha256="14wskfc350zrna1ng8wkyb91y3h01jhk93ajw3if04nkghav193a"; depends=[fda MASS]; }; + FScanR = derive2 { name="FScanR"; version="1.6.0"; sha256="0117fgbmig6zaik5j7axcw33rx2pjwhgla751sr4zi990a9p6igb"; depends=[]; }; + FamAgg = derive2 { name="FamAgg"; version="1.24.0"; sha256="0pzqy8rx7hyz93v8gh4qf861axwidxwiv3w9i8j7g796mdmy66my"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; }; + FastqCleaner = derive2 { name="FastqCleaner"; version="1.13.0"; sha256="140g8l2z2yvspz4cs01wbxd1k5bk36fmvdgbqx06y0qxyfprglzv"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; + FilterFFPE = derive2 { name="FilterFFPE"; version="1.6.0"; sha256="0x76a382lw0j06h8hlq2vrawnydjngn9w0dhymyrx94jkmsl15wl"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; }; + FindIT2 = derive2 { name="FindIT2"; version="1.2.0"; sha256="0xbs8v2xj14ak5jqc55rr4iyk37riq6g4wgrhg0hcrljjbai14v2"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; }; + FitHiC = derive2 { name="FitHiC"; version="1.22.0"; sha256="0iv14yx3g7shzl8qrjknyxbmiylj51sbd1wzr1ff9lc5shgl55kq"; depends=[data_table fdrtool Rcpp]; }; + FlowSOM = derive2 { name="FlowSOM"; version="2.4.0"; sha256="0balsds5mm981cqamdjv3ndq1y9arharisd6f2lrpkzgvwawa645"; depends=[BiocGenerics colorRamps ConsensusClusterPlus CytoML dplyr flowCore flowWorkspace ggforce ggnewscale ggplot2 ggpointdensity ggpubr ggrepel igraph magrittr pheatmap RColorBrewer rlang Rtsne scattermore tidyr XML]; }; + FoldGO = derive2 { name="FoldGO"; version="1.14.0"; sha256="1dwdppgawgc22qryc98p3ibamcn90871hgix1ad0p3zyhpvza9z5"; depends=[ggplot2 tidyr topGO]; }; + FunChIP = derive2 { name="FunChIP"; version="1.22.0"; sha256="1cc6yxizb8jxfin1pl0lxf6x0yxwvi0lr1pyg1v8a0842dv3zh1d"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; }; + GA4GHclient = derive2 { name="GA4GHclient"; version="1.20.0"; sha256="0mg6c1ygj732dpcqbv3ndh58z66msy7bp1rq95d3inj57ccw5fpf"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; }; + GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.18.0"; sha256="1gpls1wpd4rdhkwwmm81pv06sj2w6ravcsns2rgqaa4sp2pdsb8a"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; }; + GAPGOM = derive2 { name="GAPGOM"; version="1.11.0"; sha256="0sl97w5zx4zdrdbcwayqyvgxspaxpbils3mpsrim0zlspjrjcy6z"; depends=[AnnotationDbi Biobase BiocFileCache data_table dplyr fastmatch GEOquery GO_db GOSemSim graph igraph magrittr Matrix matrixStats org_Hs_eg_db org_Mm_eg_db plyr RBGL]; }; + GARS = derive2 { name="GARS"; version="1.16.0"; sha256="1v3ps3v2zsr4p2q5wvxa1wm9mnxkhc2d9sgsz841ld0rbqzw7fjl"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; }; + GAprediction = derive2 { name="GAprediction"; version="1.22.0"; sha256="08xhky97f5x6kakdavzpqdxp053nrjfjr51r4gkfvcv4xj4dypk0"; depends=[glmnet Matrix]; }; + GBScleanR = derive2 { name="GBScleanR"; version="1.0.0"; sha256="1vgjhms2gqsa9l2is6vy4qpp4hzrcda0hnimixl1i2wa4v2anz0w"; depends=[Biobase expm gdsfmt ggplot2 GWASTools Rcpp RcppParallel SeqArray tidyr]; }; + GCSConnection = derive2 { name="GCSConnection"; version="1.7.0"; sha256="1psmw3825whyzvbzqpqksgcl09b6kfyb8k5vny6ljkjbac1jzvnf"; depends=[googleAuthR googleCloudStorageR httr jsonlite Rcpp]; }; + GCSFilesystem = derive2 { name="GCSFilesystem"; version="1.6.0"; sha256="0qk8xyg06f71y4r1q1zpcj89irh9i6cd9z6nqlx635x8if84sh6d"; depends=[]; }; + GCSscore = derive2 { name="GCSscore"; version="1.10.0"; sha256="0cdhv2awcyg95cjwq088r9rsbmdi3vqnlnh0c74h7k2gjldl9r24"; depends=[affxparser Biobase BiocManager data_table devtools dplR RSQLite stringr]; }; + GDCRNATools = derive2 { name="GDCRNATools"; version="1.15.0"; sha256="1ifh8cwpvqv38xhh3mx8ly6y8dmd72dkll1fqyflz4bkjvhi5f0x"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; + GDSArray = derive2 { name="GDSArray"; version="1.16.0"; sha256="1j6a0xlrx4cjqsfcm1k1vapddi5v2q5h05b617i839l9cp0ggd1s"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; + GEM = derive2 { name="GEM"; version="1.22.0"; sha256="0vxpncvnqhgggy0is4lvgf29lgh307jkgz4zjjspdq9ds6y40l1i"; depends=[ggplot2]; }; + GENESIS = derive2 { name="GENESIS"; version="2.26.0"; sha256="1qn3x6j9lvyx130sx9wg7bxvacwbwp87x75inpxx9llc00p7sl9c"; depends=[Biobase BiocGenerics BiocParallel data_table gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; + GENIE3 = derive2 { name="GENIE3"; version="1.18.0"; sha256="0h3vnpnznb9rda8gfwp4cnd2mqsvs1vzmfx90dchn5pqaphz1k2l"; depends=[dplyr reshape2]; }; + GEOexplorer = derive2 { name="GEOexplorer"; version="1.2.0"; sha256="00lnrp07nv8hia77riy3p10iq5rsyjzlrq93l4ql6m2cxv2p4qdg"; depends=[Biobase DT factoextra GEOquery ggplot2 heatmaply htmltools impute limma maptools pheatmap plotly scales shiny shinyBS shinybusy shinyHeatmaply stringr umap]; }; + GEOfastq = derive2 { name="GEOfastq"; version="1.4.0"; sha256="05s35fbzi2w3c4y11h144mf70i0rhbx1jwdz70ldyfa0ld3hbh89"; depends=[doParallel foreach plyr RCurl rvest stringr xml2]; }; + GEOmetadb = derive2 { name="GEOmetadb"; version="1.58.0"; sha256="12x2aabm2m1rv4s91h6vyq5q36i4i15lgh3bya3bjm80bfmxkfm3"; depends=[GEOquery RSQLite]; }; + GEOquery = derive2 { name="GEOquery"; version="2.64.0"; sha256="0n21k7p2z65yw2rgf24l7van9zg4jy8sck0xmkb2l9m7q457a6iz"; depends=[Biobase curl data_table dplyr limma magrittr R_utils readr tidyr xml2]; }; + GEOsubmission = derive2 { name="GEOsubmission"; version="1.48.0"; sha256="0ml72djmli9qvq2c75nqq00q31lqcb64v8532vw4fk57cclmf76d"; depends=[affy Biobase]; }; + GEWIST = derive2 { name="GEWIST"; version="1.40.0"; sha256="0df1jm69krsr8y315mx93hjnmf4qpvnhbm0iz4j4920ra7g8wdp7"; depends=[car]; }; + GGPA = derive2 { name="GGPA"; version="1.8.0"; sha256="08p3k5dfkc2la5j99wbwswd7zhc4i4aynkmr3x561h6p59n31hnk"; depends=[GGally matrixStats network Rcpp RcppArmadillo scales sna]; }; + GIGSEA = derive2 { name="GIGSEA"; version="1.14.0"; sha256="1v8f3slcx08kcba13aq68y4lmdprz71h33cm7masrcxs2iz839c9"; depends=[locfdr MASS Matrix]; }; + GISPA = derive2 { name="GISPA"; version="1.20.0"; sha256="1qpw6fwa15p6ccylb4hjfwjypy0waywp1yiwq3fwhdazg0pbzr9h"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; }; + GLAD = derive2 { name="GLAD"; version="2.60.0"; sha256="02amcicn07ywgmd4dkinw0wq6vi0yx45m0naycfgc6bszh78a05z"; depends=[aws]; }; + GMRP = derive2 { name="GMRP"; version="1.24.0"; sha256="0bkz9pj07gn5a2gfci0zl1932mkzcmm5cv9axaa0f8yavn4vy4i5"; depends=[diagram GenomicRanges plotrix]; }; + GNET2 = derive2 { name="GNET2"; version="1.12.0"; sha256="1s09cyhhfbi5p9bnp1wgpl94js65sp63z33bf795mm6jv460ibyy"; depends=[DiagrammeR dplyr ggplot2 igraph matrixStats Rcpp reshape2 SummarizedExperiment xgboost]; }; + GOSemSim = derive2 { name="GOSemSim"; version="2.22.0"; sha256="1hp15pzd0m0g9f8kglyfsgjqxnvxcmm9022xnsrkzfvmj2yw14vd"; depends=[AnnotationDbi GO_db Rcpp]; }; + GOSim = derive2 { name="GOSim"; version="1.34.0"; sha256="0nl5fk7nxmha9sp7phmj9r6mxvg5v0p8l7pblrb34m40h3f27d96"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; }; + GOTHiC = derive2 { name="GOTHiC"; version="1.32.0"; sha256="0hnwqsa7pgxnmqrcrbn78mr647rzjs004xx2x5bbi9nbpirr04j9"; depends=[BiocGenerics BiocManager Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; }; + GOexpress = derive2 { name="GOexpress"; version="1.30.0"; sha256="164vr6hff42gym2rak37xnpz23d4ga20p67jxzw96bnynnzgaaxw"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; }; + GOfuncR = derive2 { name="GOfuncR"; version="1.16.0"; sha256="02vdfsjrqp0m06mfbspwkxjyqxfca0w1idgygpi1a9i5m4fqhwpk"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; }; + GOpro = derive2 { name="GOpro"; version="1.22.0"; sha256="04xgfmazi557r5qr9ginbfsqwvccpw7kds7kyvh6xxcy5kgnlbf0"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; }; + GOstats = derive2 { name="GOstats"; version="2.62.0"; sha256="121ly9vifarg8y7mc468571bbs0xv4sx6sflm5zcdqf0p83yvjrm"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; }; + GOsummaries = derive2 { name="GOsummaries"; version="2.32.0"; sha256="0wkal7hsfz9msf8j7975vkqqzv5x681c891zj1b4mfk6dvn5xffa"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; }; + GPA = derive2 { name="GPA"; version="1.8.0"; sha256="0z4qh88x7gvm02186mnl6bkhg1f5swqci30gzj27lj1kx700jsf3"; depends=[DT ggplot2 ggrepel plyr Rcpp shiny shinyBS vegan]; }; + GRENITS = derive2 { name="GRENITS"; version="1.48.0"; sha256="09c6d8hcawc6ky0pjhvc5yvd7fj1a1bl8n4hcw72nyfgbf20hygi"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; + GRaNIE = derive2 { name="GRaNIE"; version="1.0.0"; sha256="12fvk6lf7njd5d0j73xlg7jamrdyyvbjw6yxd7iq35snw2hvvixb"; depends=[BiocFileCache BiocManager BiocParallel Biostrings checkmate circlize colorspace ComplexHeatmap csaw data_table DESeq2 dplyr forcats futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra igraph IRanges limma magrittr Matrix matrixStats patchwork progress purrr RColorBrewer readr reshape2 rlang robust S4Vectors scales stringr SummarizedExperiment tibble tidyr tidyselect tidyverse topGO viridis]; }; + GRmetrics = derive2 { name="GRmetrics"; version="1.22.0"; sha256="1qz2bj8wnp14mw5zm2207xk3zj98s2gk16fvhdzpy21y07irrx3j"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; }; + GRridge = derive2 { name="GRridge"; version="1.20.0"; sha256="16bra2nz4i4f40x2gfcky7ggz3alpvhwcbilv48r7nv4p6b31j8i"; depends=[glmnet graph Iso mvtnorm penalized survival]; }; + GSALightning = derive2 { name="GSALightning"; version="1.24.0"; sha256="0p2k8k05283h7ls1aj5457ycqq46mxjjx7pmjijmj0kfzcmnqyv2"; depends=[data_table Matrix]; }; + GSAR = derive2 { name="GSAR"; version="1.30.0"; sha256="0b71l3hlg5zxf6y3yffbl785pprh66z89xx9gz9s2vb5rqkbqydb"; depends=[igraph]; }; + GSCA = derive2 { name="GSCA"; version="2.26.0"; sha256="0vrgzp4rc8y0amzjgqv3l77jqpbjgc5qdpijpqfm870fcjp1iqvi"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; }; + GSEABase = derive2 { name="GSEABase"; version="1.58.0"; sha256="1qhvgyg392fd98h2qnmfmhg7mil5hp9cy3qmkqs4x1bhpv1m978g"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; }; + GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.16.0"; sha256="19yvv82c2fvmjzv4rrfv19svsj2dm3pkvg78zjk7vs64y81ph5d7"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO S4Vectors SummarizedExperiment]; }; + GSEAlm = derive2 { name="GSEAlm"; version="1.56.0"; sha256="1ybfd6b79bqv3rk986456y9hqmjkgibmpv43q9ivxqz1acyvj6v0"; depends=[Biobase]; }; + GSEAmining = derive2 { name="GSEAmining"; version="1.6.0"; sha256="19r923086qr400f4p2kfn4ii09q2k2pqg9k4r035b9afqgd0x91a"; depends=[dendextend dplyr ggplot2 ggwordcloud gridExtra rlang stringr tibble tidytext]; }; + GSRI = derive2 { name="GSRI"; version="2.44.0"; sha256="0z79l6m3z0ib9iy24hpiscmxasrx33y6swrdg0k1z48sdhy0gsf1"; depends=[Biobase fdrtool genefilter GSEABase les]; }; + GSReg = derive2 { name="GSReg"; version="1.30.0"; sha256="0g0j4bh9h8qvki84gcp2s6yn2hhc38219jzihmf9jpjl66k74gs0"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; }; + GSVA = derive2 { name="GSVA"; version="1.44.0"; sha256="01mpcc28a1lki969i0s7pxpz0xwxaiy76ikcs52bbabsjadpbclg"; depends=[Biobase BiocParallel BiocSingular DelayedArray DelayedMatrixStats GSEABase HDF5Array IRanges Matrix S4Vectors SingleCellExperiment sparseMatrixStats SummarizedExperiment]; }; + GSgalgoR = derive2 { name="GSgalgoR"; version="1.6.0"; sha256="1wi6ww5rycc2zxhnm83amzrh7ffripmiqklcmxisv6jqgr64adp3"; depends=[cluster doParallel foreach matchingR nsga2R proxy survival]; }; + GUIDEseq = derive2 { name="GUIDEseq"; version="1.26.0"; sha256="1ar20zr3mjfqs7fvd323mdrxylvsjazn6si4d8ilgbpq4xhdv58a"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges hash IRanges limma matrixStats Rsamtools S4Vectors]; }; + GWAS_BAYES = derive2 { name="GWAS.BAYES"; version="1.6.0"; sha256="01bj6gh95p95imyvvzjylnw42rcrzw3x8z0q8x2cx42zqf45dqc1"; depends=[caret doParallel GA ggplot2 Matrix memoise Rcpp RcppEigen reshape2]; }; + GWASTools = derive2 { name="GWASTools"; version="1.42.0"; sha256="0n0gcapaj5y72a03624zhrd11h3b5q65yr1lp2ljpwp2xhl8rh4z"; depends=[Biobase data_table DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; }; + GWENA = derive2 { name="GWENA"; version="1.6.0"; sha256="10cs5csg6dwqajsk461flq55siz6jfd90w5cyqdhyq4mcbv6zp1x"; depends=[cluster dplyr dynamicTreeCut ggplot2 gprofiler2 igraph magrittr matrixStats NetRep purrr RColorBrewer rlist stringr SummarizedExperiment tibble tidyr WGCNA]; }; + GateFinder = derive2 { name="GateFinder"; version="1.16.0"; sha256="1wrx3rp1r4fjq8c56dk40izawzpsrmkrrdvivi67arx5pdjhjz30"; depends=[diptest flowCore flowFP mvoutlier splancs]; }; + GenProSeq = derive2 { name="GenProSeq"; version="1.0.0"; sha256="0vmsjpdkfvq28bihmf47a2ihlfxzadjr5vm6clh25016rz0086pp"; depends=[CatEncoders DeepPINCS keras mclust reticulate tensorflow ttgsea word2vec]; }; + GenVisR = derive2 { name="GenVisR"; version="1.28.0"; sha256="1cr9f044vj4qfb050nsbnnr9bvz12p3fzvnag54na3j2yinvsq6c"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI FField GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; }; + GeneAccord = derive2 { name="GeneAccord"; version="1.14.0"; sha256="0lpw3fxfwfhnymivvjh6na9ssqs7268543kpf5wximfcm7wy9mzm"; depends=[biomaRt caTools dplyr ggplot2 ggpubr gtools magrittr maxLik RColorBrewer reshape2 tibble]; }; + GeneBreak = derive2 { name="GeneBreak"; version="1.26.0"; sha256="0dw5r5zaxp0y2g626gsvwcqcaqf7lz8ajnca6n6k6krbng7nqpf2"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; }; + GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.42.0"; sha256="0jyxvsqm8gswbv2aky18hz2lc75l2l12yidhkqhv0c0rr3kxqvsv"; depends=[Biobase]; }; + GeneGA = derive2 { name="GeneGA"; version="1.46.0"; sha256="1xb7m5rzgycbp1w1wa022ksn5fskkvyh38ndg7a11nfk0lq1mxiw"; depends=[hash seqinr]; }; + GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.22.0"; sha256="1ccxwdjyk567i78xda40ycnpa9lnln9zc8r9k5njwizj9wma1fzy"; depends=[data_table FactoMineR GenomicRanges igraph IRanges kernlab mvtnorm Rsamtools snpStats]; }; + GeneMeta = derive2 { name="GeneMeta"; version="1.68.0"; sha256="1y0d65h40s68gmnw680a2ac1g6kmfh4zbgzff1dblh1k4lvgzir2"; depends=[Biobase genefilter]; }; + GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.38.0"; sha256="0yz0p9q3km71lji12p0bqa7zz6rcbrmw2c62im0bnrxmraw1l498"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; }; + GeneOverlap = derive2 { name="GeneOverlap"; version="1.32.0"; sha256="0nqwa3x9q1hl9nm06hqzzrn00rirc9kj6s320csjlf7x6rcidr93"; depends=[gplots RColorBrewer]; }; + GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.52.0"; sha256="0qgfjlahc93ijsz7m2i11xmkkkwnzddf4mi17l2cq6a14ykdlww5"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; }; + GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.40.0"; sha256="19q88wy0gmyyvc9ddq7dm6mqy5zh8kqpad1dz5ymvzq8663cldqa"; depends=[Biobase limma MASS]; }; + GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.16.0"; sha256="1ciflsp0i96ljh4xz1b1bbf6za4hd2swnykmp0wvgayxxcwxdwjv"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; + GeneTonic = derive2 { name="GeneTonic"; version="2.0.0"; sha256="17bk87n8i50qprwsh2ig5xyvbvf8qrii19k2d8hwpw1fa593h9sm"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap ComplexUpset dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinyAce shinycssloaders shinyWidgets SummarizedExperiment tidyr tippy viridis visNetwork]; }; + GeneticsPed = derive2 { name="GeneticsPed"; version="1.58.0"; sha256="0vbkbjyb9r5gsbkn3c28y3bicmn82r1bfsah6ww6pf539xzipbzj"; depends=[gdata genetics MASS]; }; + GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.32.1"; sha256="0iq6rgyxq17kzpikzhhh04ydpd5g9b71qbm879b033xlxrp6kxym"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; + GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.32.0"; sha256="1ifmlc0488f5yzcf4p92dmdc7psxl5c0aa7qpxjk0a07gf7lldbi"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; + GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.20.1"; sha256="0w275sn7sr2c3z3w00klj9w7ks7x3xqi7rvb8r19yyz481kd0z54"; depends=[dplyr GenomicRanges httr IRanges jsonlite magrittr rappdirs readr rlang tibble xml2]; }; + GenomicDistributions = derive2 { name="GenomicDistributions"; version="1.4.1"; sha256="1b9jgwaivk6xmd97qrb0wb39dwmf4x2d7zd3q428k7wrkrk4cffw"; depends=[Biostrings broom data_table dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges plyr reshape2 scales]; }; + GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.48.0"; sha256="11j5xv6l877hcd16yyrgr1rf788d99dc1qw9pxbi4rh0bhsqfrdq"; depends=[AnnotationDbi Biobase BiocGenerics BiocIO biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; + GenomicFiles = derive2 { name="GenomicFiles"; version="1.32.0"; sha256="0qgpwz7296fqqnvk9fssn9cc738q2mqla34zwxpkr2xscfpyz93f"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges MatrixGenerics Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + GenomicInteractionNodes = derive2 { name="GenomicInteractionNodes"; version="1.0.0"; sha256="064mvbgrhf098pyqabqdi70yskri5pa3fd1yylzwmabx3g7wvsw8"; depends=[AnnotationDbi GenomeInfoDb GenomicFeatures GenomicRanges GO_db graph IRanges RBGL S4Vectors]; }; + GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.30.0"; sha256="0aph1hja5vfprxs3jl4zd1inhvih6m3v1p3jkm6w7xpj3jzvmgbx"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; + GenomicOZone = derive2 { name="GenomicOZone"; version="1.10.0"; sha256="1dhrlibbs41rl97rspnn4sc77ic5rv7l23vgm4qmgq37lv1crpdk"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges lsr plyr Rdpack S4Vectors]; }; + GenomicRanges = derive2 { name="GenomicRanges"; version="1.48.0"; sha256="088rv1aclwq265pdg4hmks73nl0125vk0vigyi44n3djkrdx48yn"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; }; + GenomicScores = derive2 { name="GenomicScores"; version="2.8.0"; sha256="0zq9k4189dlc14f9rknsc1ffhpjzb2f4fzdaszfdbnd4rr43b79i"; depends=[AnnotationHub Biobase BiocFileCache BiocGenerics BiocManager Biostrings DelayedArray GenomeInfoDb GenomicRanges HDF5Array IRanges rhdf5 S4Vectors XML]; }; + GenomicSuperSignature = derive2 { name="GenomicSuperSignature"; version="1.4.0"; sha256="09hfb3j1v4b2as4vwy87h5jqi4kzz179k4lzvw4csr0yvs80f3ks"; depends=[Biobase BiocFileCache ComplexHeatmap dplyr flextable ggplot2 ggpubr plotly S4Vectors SummarizedExperiment]; }; + GenomicTuples = derive2 { name="GenomicTuples"; version="1.30.0"; sha256="0mjw7vvw28lgb7yrsymnixambnwasq79hfbcc3rw24c0srad6hsw"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + GeoDiff = derive2 { name="GeoDiff"; version="1.2.0"; sha256="0s0bcx6j7varibkv5gwf29kld8znzz0dlbsrip6qxg5w23wwdhcz"; depends=[Biobase GeomxTools lme4 Matrix NanoStringNCTools plyr Rcpp RcppArmadillo robust roptim testthat withr]; }; + GeomxTools = derive2 { name="GeomxTools"; version="3.0.1"; sha256="1jj4jsh4z514lkdzd7isfhsg54lr6fkvqacdmizyvbcpiiccgw6v"; depends=[Biobase BiocGenerics data_table dplyr EnvStats GGally ggplot2 lmerTest NanoStringNCTools readxl reshape2 rjson rlang S4Vectors SeuratObject stringr]; }; + GladiaTOX = derive2 { name="GladiaTOX"; version="1.12.0"; sha256="15s1qm5519ijr4h2krbfgix1768yb4jjhx9py57px6v6mwg7ahks"; depends=[brew data_table DBI ggplot2 ggrepel numDeriv RColorBrewer RCurl RJSONIO RMySQL RSQLite stringr tidyr XML xtable]; }; + Glimma = derive2 { name="Glimma"; version="2.6.0"; sha256="1k17ay09vhb2hakg1vrgvpp1zliavlj7cdkxaal162bc3v8pyvyz"; depends=[DESeq2 edgeR htmlwidgets jsonlite limma S4Vectors SummarizedExperiment]; }; + GlobalAncova = derive2 { name="GlobalAncova"; version="4.14.0"; sha256="01w50kl0cfif8d773i4xx70p8wp337fkx6kclxgvrgd7bmv286v4"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; }; + GmicR = derive2 { name="GmicR"; version="1.10.0"; sha256="02h92xlziqjva283crbgjlffii00bsmbldknzsj38fksjp43dih9"; depends=[AnnotationDbi ape bnlearn Category data_table doParallel DT foreach GOstats gRain gRbase GSEABase org_Hs_eg_db org_Mm_eg_db reshape2 shiny WGCNA]; }; + GraphAT = derive2 { name="GraphAT"; version="1.68.0"; sha256="1s5qcykfprqwqbhmlp64yxmjaxskwrxgh93j4idzgp71md1k5sf1"; depends=[graph MCMCpack]; }; + GraphAlignment = derive2 { name="GraphAlignment"; version="1.60.0"; sha256="0spjsqb8rx6si5lshk0drlq1h4h5jgb6bmcwdh0wz9755npz0p8m"; depends=[]; }; + GraphPAC = derive2 { name="GraphPAC"; version="1.38.0"; sha256="1qrcxcb68bx1kzpilrd61m14902wl490kmzkjj9bv35w20ln1f3h"; depends=[igraph iPAC RMallow TSP]; }; + GreyListChIP = derive2 { name="GreyListChIP"; version="1.28.0"; sha256="1ix1lfnj1ayh8knq0d1cz1nrwkcrnpbsbymgip1n7yisjyw801wb"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; }; + Guitar = derive2 { name="Guitar"; version="2.12.0"; sha256="09grsasnnk7rmlzjh4lhas9r5spzcsrvmdqj6fx1dk22sckcqahh"; depends=[AnnotationDbi dplyr GenomicFeatures GenomicRanges ggplot2 knitr magrittr rtracklayer]; }; + Gviz = derive2 { name="Gviz"; version="1.40.1"; sha256="0as3sxhv21bqqrpvafcqim7798hhkzj3q40hy1rqyhv2lhj4rbvi"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; }; + HDF5Array = derive2 { name="HDF5Array"; version="1.24.0"; sha256="0s9vj74359ckmwl8r951jxrzkidslwdl9qamkhz8ilw8b5awxyw4"; depends=[BiocGenerics DelayedArray IRanges Matrix rhdf5 rhdf5filters Rhdf5lib S4Vectors]; }; + HDTD = derive2 { name="HDTD"; version="1.30.0"; sha256="084bx1qwlibpd6xna29sb9nfksxa3z4jiz4l3fhkl8n5ww6k33pq"; depends=[Rcpp RcppArmadillo]; }; + HELP = derive2 { name="HELP"; version="1.54.0"; sha256="1sk3433d90msi6g0rpvsj8fdvr7isqs7gna409fcya2n4dlgmbs1"; depends=[Biobase]; }; + HEM = derive2 { name="HEM"; version="1.68.0"; sha256="1hq6i9rjrlis4fmi6zc06d37562vvv0sbsm4mihyrfmmn87k06wq"; depends=[Biobase]; }; + HGC = derive2 { name="HGC"; version="1.4.0"; sha256="1mm6drdslj7f23p9mzy0nlmyvmqafad9hm7nvskm6fv4jwbpg4wv"; depends=[ape dendextend dplyr ggplot2 Matrix mclust patchwork RANN Rcpp RcppEigen]; }; + HIBAG = derive2 { name="HIBAG"; version="1.32.0"; sha256="0a9gm7r2f1rfqzc5bviz3z4bfgl5lfzdwjlrc1dca2s6qsb5z01l"; depends=[RcppParallel]; }; + HIPPO = derive2 { name="HIPPO"; version="1.8.0"; sha256="0y69bc5557sijzczh2viflxg6wgy380a8jk7d1cqgmqcaqabwzbv"; depends=[dplyr ggplot2 ggrepel gridExtra irlba magrittr Matrix reshape2 rlang Rtsne SingleCellExperiment umap]; }; + HIREewas = derive2 { name="HIREewas"; version="1.14.0"; sha256="0gxaki4si2brjjns1fmhkgbrxv6kr5wcrhxx3083cnhdvllpqmzi"; depends=[gplots quadprog]; }; + HMMcopy = derive2 { name="HMMcopy"; version="1.38.0"; sha256="0hpb42wxsxyvl2p7l9ml2fnr30fvba54hc8zrl6rqaf9qdhw4c3x"; depends=[data_table]; }; + HPAStainR = derive2 { name="HPAStainR"; version="1.6.0"; sha256="1hp5y6ws0zg3qckd2bhhbpcqpzrlggljphqi2xc9fmjpbk2h0hbg"; depends=[data_table dplyr scales shiny stringr tibble tidyr]; }; + HPAanalyze = derive2 { name="HPAanalyze"; version="1.14.0"; sha256="0w69qs669l36n287n3dqz3ym81m5ww3191xd6ixrxz4c4jph16d5"; depends=[dplyr ggplot2 gridExtra openxlsx tibble xml2]; }; + HPiP = derive2 { name="HPiP"; version="1.2.0"; sha256="19pay1091q5w0kmcx1f2843dm1lk3f7p2nd9ffvgynxg84k873i8"; depends=[caret corrplot dplyr ggplot2 httr igraph magrittr MCL pROC protr PRROC purrr readr stringr tibble tidyr]; }; + HTSFilter = derive2 { name="HTSFilter"; version="1.36.0"; sha256="0s47sd83ih69r8m7q4llnscwpljbiraam16mwz29jwij5nqlaa1q"; depends=[Biobase BiocParallel DESeq2 edgeR]; }; + HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.25.1"; sha256="0g1qkp8h4cmsisvjkv8qgm6aq4yifkr9bs1rxzlva0hlxlllg5k8"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; }; + HTqPCR = derive2 { name="HTqPCR"; version="1.50.0"; sha256="0am98rzwpi3kybq1l27c5qn3n1pg5aqwmh6jq9q0lzbjjin3haqc"; depends=[affy Biobase gplots limma RColorBrewer]; }; + Harman = derive2 { name="Harman"; version="1.24.0"; sha256="1rcn9i6mav40c1awxpnrn7lqxqmxhsm1mdgawcvx10xflyy7gqik"; depends=[Ckmeans_1d_dp matrixStats Rcpp]; }; + Harshlight = derive2 { name="Harshlight"; version="1.68.0"; sha256="152gxcngniw14kmminf9fcc0jkvi4dab1j88mp13nv05nmkd7c7l"; depends=[affy altcdfenvs Biobase]; }; + Heatplus = derive2 { name="Heatplus"; version="3.4.0"; sha256="0b1mzxysmrqinp93p587apna8p0llmawblwj93icydqxxm2jkhb1"; depends=[RColorBrewer]; }; + HelloRanges = derive2 { name="HelloRanges"; version="1.22.0"; sha256="1mmp19gpmpgn3kw9wjgsdc25hf4jfgg9bkjplg2qaf8rvm0mj8ih"; depends=[BiocGenerics BiocIO Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + HiCBricks = derive2 { name="HiCBricks"; version="1.14.0"; sha256="0zf4mpq1bv7hhylrwnz3ia26mxwjyfx6rr9l9hxcjvm6zxh856dc"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; }; + HiCDCPlus = derive2 { name="HiCDCPlus"; version="1.4.0"; sha256="1rxiv734c1mpm7xaad2iv8hbwliq1mjhqm48f54yfcr50w0k31yg"; depends=[bbmle Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicInteractions GenomicRanges InteractionSet IRanges MASS pscl R_utils Rcpp rlang rtracklayer S4Vectors tibble tidyr]; }; + HiCcompare = derive2 { name="HiCcompare"; version="1.18.0"; sha256="0bgfa085x3w8g005iwnydv1c5i2sz12h5pksmki3427im6khycmr"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq rhdf5 S4Vectors]; }; + HiLDA = derive2 { name="HiLDA"; version="1.10.0"; sha256="0rf96isx2qwy7fs8y43bamfcdypiwbh5gggxqmdwdgkk0zhcpnls"; depends=[abind BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot forcats GenomicFeatures GenomicRanges ggplot2 R2jags Rcpp S4Vectors stringr tidyr TxDb_Hsapiens_UCSC_hg19_knownGene XVector]; }; + HiTC = derive2 { name="HiTC"; version="1.40.0"; sha256="1pkshlrra26cad0hf8a54brlkazni6rsvrplh36azxapx5rpps4s"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; }; + HilbertCurve = derive2 { name="HilbertCurve"; version="1.26.0"; sha256="0ay05dh8n98v1fasj9dw195vi24wry40xnzzcf57wfvxrn18ps34"; depends=[circlize GenomicRanges HilbertVis IRanges png polylabelr]; }; + HilbertVis = derive2 { name="HilbertVis"; version="1.54.0"; sha256="0vci86nzwynzv95v90c48nkrwnf55z3a8ah2k6q5d17v8jd9p9b5"; depends=[lattice]; }; + HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.54.0"; sha256="19x99ah99a7fh1h7lhpxjs0ibnh7bcy6ri250clvv54pv2znindi"; depends=[HilbertVis]; }; + HubPub = derive2 { name="HubPub"; version="1.4.0"; sha256="1xixk2vm9ipm9rpdhcvs66gar2f7wlnx72pwfmlr0s75v6d5y0a5"; depends=[available aws_s3 BiocManager biocthis dplyr fs usethis]; }; + HumanTranscriptomeCompendium = derive2 { name="HumanTranscriptomeCompendium"; version="1.12.0"; sha256="0b76awzcz8nf6hpipfiylz2rn40zi443wld4v087baljb7y41wyr"; depends=[S4Vectors shiny ssrch SummarizedExperiment]; }; + HybridMTest = derive2 { name="HybridMTest"; version="1.40.0"; sha256="0wf002nrfr5ndkr2am555ifnx39iwygd5i2294z84vbfpxdi39rs"; depends=[Biobase fdrtool MASS survival]; }; + IHW = derive2 { name="IHW"; version="1.24.0"; sha256="1gsfy75dz7xh16z844llcmjnp0a0ridszmrbbv2bdaa43na5msmf"; depends=[BiocGenerics fdrtool lpsymphony slam]; }; + ILoReg = derive2 { name="ILoReg"; version="1.6.0"; sha256="091z51j8whfg02g2lbfrjm53vcyncrc8v6g2agkr7p8ji2ms09la"; depends=[aricode cluster cowplot dendextend DescTools doRNG doSNOW dplyr fastcluster foreach ggplot2 LiblineaR Matrix parallelDist pheatmap plyr reshape2 RSpectra Rtsne S4Vectors scales SingleCellExperiment SparseM SummarizedExperiment umap]; }; + IMAS = derive2 { name="IMAS"; version="1.20.0"; sha256="07gb5k0xjwpq74ziknl3y9448591z6cxc7yza16x3vaz3927y7nz"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; }; + IMMAN = derive2 { name="IMMAN"; version="1.16.0"; sha256="1fg0vcckibrn59lcjvp3bjx1bzzvgl8wvbwj65zs22bkaw0g14h5"; depends=[Biostrings igraph seqinr STRINGdb]; }; + IMPCdata = derive2 { name="IMPCdata"; version="1.32.0"; sha256="09x3bnwdjrs3p3mkafln4fxxf1v4yglffwsj7bypfl04d4nqvsn6"; depends=[rjson]; }; + INDEED = derive2 { name="INDEED"; version="2.10.0"; sha256="09d694i2rjgaw4f3jsm41x0b1jhzxizbnvi9vvr8sd535cgzgczz"; depends=[devtools glasso igraph visNetwork]; }; + INPower = derive2 { name="INPower"; version="1.32.0"; sha256="0zszizdpb4b3lwp9561a1rq415vxns3w5dky2g1121p7b0pn3wdq"; depends=[mvtnorm]; }; + INSPEcT = derive2 { name="INSPEcT"; version="1.26.0"; sha256="0jx887vhxwd8zlqajr9czvn9nx88ryyxlnl58hxrlajjpcjkz9ax"; depends=[Biobase BiocGenerics BiocParallel DESeq2 deSolve gdata GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges KernSmooth plgem pROC rootSolve Rsamtools rtracklayer S4Vectors shiny SummarizedExperiment TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + IONiseR = derive2 { name="IONiseR"; version="2.20.0"; sha256="0cgx1dcfh617l9vr4r3ky8w7f0snl0vpavfd9n1h5n68p0p42dwi"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; }; + IPO = derive2 { name="IPO"; version="1.21.0"; sha256="1kf84n6af1aqq2lcm1yffc4kkdnjyc0lw9yjqvifhl03ba8kbmp0"; depends=[BiocParallel CAMERA rsm xcms]; }; + IRISFGM = derive2 { name="IRISFGM"; version="1.4.0"; sha256="13c9xk3gmqg0chzhmd6kj9fwmc11mc2j3wqin5202dkkn7x9b170"; depends=[AdaptGauss AnnotationDbi anocva clusterProfiler colorspace DEsingle DrImpute ggplot2 ggpubr ggraph igraph knitr Matrix MCL mixtools org_Hs_eg_db org_Mm_eg_db pheatmap Polychrome RColorBrewer Rcpp scater scran Seurat SingleCellExperiment]; }; + IRanges = derive2 { name="IRanges"; version="2.30.0"; sha256="0hfx5n0b4pqrrc1w2dik596803ly8ffnxfs768iy5l5kr8wwyc8k"; depends=[BiocGenerics S4Vectors]; }; + ISAnalytics = derive2 { name="ISAnalytics"; version="1.6.0"; sha256="0bqppw0j9sgy0c81cnidzji4089ybfad8y82pyrzpki04ga0zr37"; depends=[BiocParallel bslib data_table datamods dplyr forcats fs ggplot2 ggrepel glue lifecycle lubridate magrittr psych purrr Rcapture readr readxl rlang shiny shinyWidgets stringr tibble tidyr]; }; + ISoLDE = derive2 { name="ISoLDE"; version="1.24.0"; sha256="13cgy5hr4y6l3fkq2fx43wm4aypn5k3wp159kdqgp00lywd7pzxp"; depends=[]; }; + ITALICS = derive2 { name="ITALICS"; version="2.56.0"; sha256="150kfwhf47ipr2aql5cxli2hhs3cmgcya9aag0il41xy0wgc96k5"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; }; + IVAS = derive2 { name="IVAS"; version="2.16.0"; sha256="1flsha57b7p2rnnrg4vs9dpghr9kf6g92r0xng3rrmxzb9i88kzw"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; }; + IWTomics = derive2 { name="IWTomics"; version="1.20.0"; sha256="0yqgvyybfqpp4s44if323ipvxl8mpnjbsfvibbmhq108radzv488"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; }; + Icens = derive2 { name="Icens"; version="1.68.0"; sha256="0jnbfv7js8bw0ginql90krrpk0p54whj9igw0zk3jc45jqvj2vyc"; depends=[survival]; }; + IdeoViz = derive2 { name="IdeoViz"; version="1.32.0"; sha256="1wwh3ifdijhpm58lw7cmnx084xwfxnc7i0206w8rhrjnvnq6ljh3"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; }; + IgGeneUsage = derive2 { name="IgGeneUsage"; version="1.10.0"; sha256="08rm56fniyg6lp8psmh0z6f2hvngvpy0q8fzcxxsizff87mqf0hq"; depends=[Rcpp reshape2 rstan StanHeaders SummarizedExperiment]; }; + ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.24.0"; sha256="12hk0bq0fgna8dbahgc04lm9bgv2jp8lh1qirjs5x45gjz896mbz"; depends=[Biobase curl data_table digest flowCore flowWorkspace ggplot2 gplots heatmaply httr jsonlite pheatmap plotly preprocessCore R6 Rlabkey rmarkdown scales]; }; + InPAS = derive2 { name="InPAS"; version="2.4.0"; sha256="17ndjhf0kngpp7l48xbzc4p10h8zrmk76kjf05dw6ifpg50plqip"; depends=[AnnotationDbi batchtools Biobase Biostrings BSgenome cleanUpdTSeq depmixS4 dplyr flock future future_apply GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges limma magrittr parallelly plyranges preprocessCore readr reshape2 RSQLite S4Vectors]; }; + InTAD = derive2 { name="InTAD"; version="1.16.0"; sha256="1xjzml66a1sfqi0lai2jflfxwfc4k6n4cbram50sn21h7lkq330k"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; }; + Informeasure = derive2 { name="Informeasure"; version="1.6.0"; sha256="0rna7pgsgq4amjmq91y40gxrqv0rw3vc1rfk5g5bq2ki3lqqvi0s"; depends=[entropy]; }; + IntEREst = derive2 { name="IntEREst"; version="1.20.0"; sha256="10rnm2va657zqcmbrd2f19ypmm0s8kyljy0b22kx8qn0zr7zcis3"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; }; + InterCellar = derive2 { name="InterCellar"; version="2.2.0"; sha256="136hcjhn1mgvmvxqfmmwrclqm4qrfkhwfkkcn008ga9i01s94yvp"; depends=[biomaRt circlize colorspace colourpicker ComplexHeatmap config data_table dendextend dplyr DT factoextra fmsb fs ggplot2 golem htmltools htmlwidgets igraph plotly plyr readxl rlang scales shiny shinyalert shinycssloaders shinydashboard shinyFeedback shinyFiles signal tibble tidyr umap visNetwork wordcloud2]; }; + InterMineR = derive2 { name="InterMineR"; version="1.18.0"; sha256="09qsh1ha2f5lipm3hnjpq7ra5xx2fqll9jkkq20w9xqn2b8a59mr"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; }; + InteractionSet = derive2 { name="InteractionSet"; version="1.24.0"; sha256="0qjimx25jvm8siq8hmlbf2z6mknzpbq945p06fsj826k57bpcsm5"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; }; + InteractiveComplexHeatmap = derive2 { name="InteractiveComplexHeatmap"; version="1.4.0"; sha256="13pij41vhafipf96069hv6qkja75vkdxj5iicpbq409d8sdghbj2"; depends=[clisymbols ComplexHeatmap digest fontawesome GetoptLong htmltools IRanges jsonlite kableExtra RColorBrewer S4Vectors shiny svglite]; }; + IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.18.0"; sha256="0w8zvlx4il5fh9fczfabac9mvzvxbrskn7pf0cc49s5ja8267vpq"; depends=[FGNet igraph knitr]; }; + IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="1.14.0"; sha256="1g4xv5x9g5ijjq80k8jswil7crhmwqv2j29rialx9z980nvkphyr"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; }; + IsoCorrectoRGUI = derive2 { name="IsoCorrectoRGUI"; version="1.12.0"; sha256="10ysfzhycawlhm6zxxk1flwgz9si09vxv4hjygmjp2nn23py4ivm"; depends=[IsoCorrectoR readxl tcltk2]; }; + IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.31.0"; sha256="1w7zxsvmcrz8cj8g8xa1vqbzfycdhgsclhcjmkqjw1hwz6fp3xgn"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust RColorBrewer Rcpp relimp tkrplot xlsx]; }; + IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.18.0"; sha256="0n1gb9azxa1mxpsqvw3i3kf72f45nyjj1kgwwrzhd88n3g63lvkd"; depends=[Biobase BiocGenerics Biostrings BSgenome DBI DEXSeq dplyr DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr plyr RColorBrewer RCurl readr reshape2 rtracklayer stringr tibble tximeta tximport VennDiagram XVector]; }; + KBoost = derive2 { name="KBoost"; version="1.4.0"; sha256="03rlkz6sblc6x2g1qy2n3di4gpribhxyivm2ddqsxzlm74f24mc1"; depends=[]; }; + KCsmart = derive2 { name="KCsmart"; version="2.54.0"; sha256="1qw4ag113rkg6lv556m0wv5c89r86f9sw1jzdg6mx4vrprnl64lv"; depends=[BiocGenerics KernSmooth multtest siggenes]; }; + KEGGREST = derive2 { name="KEGGREST"; version="1.36.0"; sha256="0hzlm6nzmx0iyjh063512a3ghc1xqb58g5z2bnd2wl4y42iww7bg"; depends=[Biostrings httr png]; }; + KEGGgraph = derive2 { name="KEGGgraph"; version="1.56.0"; sha256="15pq040pcg8hr18xixmjp59xb7mgvygjv6kisqk8yv99l1611ndx"; depends=[graph RCurl Rgraphviz XML]; }; + KEGGlincs = derive2 { name="KEGGlincs"; version="1.22.0"; sha256="1lrs6nqsfsafnvkyj46851r7m6b10dq8f6jfikqyhbv4cisw4kln"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; }; + KinSwingR = derive2 { name="KinSwingR"; version="1.14.0"; sha256="1703kfmgp52v6yd5pjj8d7s8j725xq4xgrzsi015jgrka76q1860"; depends=[BiocParallel data_table sqldf]; }; + KnowSeq = derive2 { name="KnowSeq"; version="1.10.0"; sha256="0wk50wg7fpdjds4cdyn3adrjwbrxcl2dd7b4jv4f1492f58mazi3"; depends=[caret cqn e1071 edgeR ggplot2 gridExtra Hmisc httr jsonlite kernlab limma praznik R_utils randomForest reshape2 rlist rmarkdown stringr sva XML]; }; + LACE = derive2 { name="LACE"; version="2.0.0"; sha256="0msm6hw4jkhgi4idz8xd8xjnywhz9sp5bh9xkwamc7854nfq5bqw"; depends=[biomaRt bsplus callr configr curl data_table data_tree doParallel dplyr DT foreach fs htmltools htmlwidgets igraph jsonlite Matrix purrr RColorBrewer readr Rfast shiny shinyBS shinydashboard shinyFiles shinyjs shinythemes sortable stringi stringr SummarizedExperiment tidyr]; }; + LBE = derive2 { name="LBE"; version="1.64.0"; sha256="1zlz3z9pin4aikdqwzs8p1y4mmkmjaj28hghv55lp2ygfy3z63y5"; depends=[]; }; + LEA = derive2 { name="LEA"; version="3.8.0"; sha256="0x5pwlk24f3mksd1wzgb09majsln4v10j54np1jlvydgcrd5pzf0"; depends=[]; }; + LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.22.0"; sha256="0scjl3g6bw3mh3ba7p4wa88vpa91msb6sridx0dn7v1vyi4c46q9"; depends=[CAMERA xcms]; }; + LOLA = derive2 { name="LOLA"; version="1.26.0"; sha256="142xwvx7bz5c8qg2kyi336bhrvvvmz8p5jjccciay59ywrwj6glq"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; }; + LPE = derive2 { name="LPE"; version="1.70.0"; sha256="03h2ipcj8zndj5rz1b9cwrdlxkxy0n7jalxmd75bwv3fyw82zdyq"; depends=[]; }; + LPEadj = derive2 { name="LPEadj"; version="1.56.0"; sha256="0w33bk7f0cbs8s7ay0q5h7khkxrg3i3h6cbpdz80r7p175rzn430"; depends=[LPE]; }; + LRBaseDbi = derive2 { name="LRBaseDbi"; version="2.6.0"; sha256="03h7dp2s2salrydvdwf323bhipfalhz8y59da44cjqbccmvq6l7r"; depends=[AnnotationDbi Biobase DBI RSQLite]; }; + LRcell = derive2 { name="LRcell"; version="1.4.0"; sha256="0yl32x1rx195csgv2sr3skw1089l5sb1k2da4x4shjjyljcvbj3y"; depends=[AnnotationHub BiocParallel dplyr ExperimentHub ggplot2 ggrepel magrittr]; }; + LedPred = derive2 { name="LedPred"; version="1.30.0"; sha256="17yqi84qmcwyg01swqzilinrjnlk8fq5x673nvz0l9cjbkq8nya3"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; }; + LinTInd = derive2 { name="LinTInd"; version="1.0.0"; sha256="1bj2j8hgs8rdk304i1i16xf6qwglyhxpcbw63zsmhqp4d1yw490g"; depends=[ape BiocGenerics Biostrings cowplot data_tree dplyr ggnewscale ggplot2 ggtree IRanges networkD3 pheatmap purrr reshape2 rlist S4Vectors stringdist stringr]; }; + LineagePulse = derive2 { name="LineagePulse"; version="1.16.0"; sha256="0h5s52iyfqnv6wrwb13qzv18dr2nrvxp359vxs8yrvynwl2ffhz5"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; }; + LinkHD = derive2 { name="LinkHD"; version="1.10.0"; sha256="0f2qqvas1nvj5j22ihclxiv4sb0k7jyyygcn4bfrxv3pd29nhq47"; depends=[cluster data_table emmeans ggplot2 ggpubr gridExtra MultiAssayExperiment reshape2 rio scales vegan]; }; + Linnorm = derive2 { name="Linnorm"; version="2.20.0"; sha256="1002lllgns5klv3q2wsikkbypa2bafpka7a8mri0y5bfxncfr2zb"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; }; + LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.50.0"; sha256="123qlv58y4vhsjnqgxs0w8zylnvib0hjb3jlg5cl74xzdb2gfl0f"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; }; + LoomExperiment = derive2 { name="LoomExperiment"; version="1.14.0"; sha256="1rnnvnbpxlvy85fdyz9zxsn4r6j4x8fydblz00jjl3mk9943538j"; depends=[BiocIO DelayedArray GenomicRanges HDF5Array Matrix rhdf5 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; + LowMACA = derive2 { name="LowMACA"; version="1.25.0"; sha256="040f9gngial6akqghv9fcv8x11f0xm3qmnfki5xc7ryl0j7a3ahm"; depends=[BiocParallel Biostrings data_table gridBase httr LowMACAAnnotation motifStack RColorBrewer reshape2 stringr]; }; + LymphoSeq = derive2 { name="LymphoSeq"; version="1.24.0"; sha256="12habp9qw5pi6ylfwraqayxfhmrxx2334gcj0k3c8awgxnb20hc1"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; }; + M3C = derive2 { name="M3C"; version="1.18.0"; sha256="120gd7gkgc98d1l6hl2ij799b3jksdnga5iyb44ps9mbc79hl012"; depends=[cluster corpcor doParallel doSNOW foreach ggplot2 Matrix matrixcalc Rtsne umap]; }; + M3Drop = derive2 { name="M3Drop"; version="1.22.0"; sha256="0h8qj7hwkm007717yv2j6bx5ri0zi71yd2bdl45rh68j30qv62ab"; depends=[bbmle gplots Hmisc irlba Matrix matrixStats numDeriv RColorBrewer reldist statmod]; }; + MACPET = derive2 { name="MACPET"; version="1.15.1"; sha256="0742i3fxg2793lhgpxb4whh6mwvzd4bn86ykd0rv8sgilxyq5zsl"; depends=[BH bigmemory BiocParallel Biostrings futile_logger GenomeInfoDb GenomicAlignments GenomicRanges GEOquery gtools InteractionSet intervals IRanges knitr plyr Rbowtie Rcpp Rsamtools rtracklayer S4Vectors ShortRead]; }; + MACSQuantifyR = derive2 { name="MACSQuantifyR"; version="1.10.0"; sha256="060ja4q3nh8vl2gmdhdi028kqbk108mgmzmlvi68v3ndlhn535fq"; depends=[ggplot2 ggrepel gridExtra lattice latticeExtra png prettydoc readxl rmarkdown rvest xml2]; }; + MACSr = derive2 { name="MACSr"; version="1.4.0"; sha256="1m35zsd20cfj715hxdn0sglr3k6yc18danhi422wx9mqnrig9grh"; depends=[AnnotationHub basilisk ExperimentHub reticulate S4Vectors]; }; + MADSEQ = derive2 { name="MADSEQ"; version="1.22.0"; sha256="0wv6c1hmpsmzlxbx4vxvb7259ywy15knwkw3k6cdn15sxfkyviaf"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; }; + MAGAR = derive2 { name="MAGAR"; version="1.4.0"; sha256="1kgbs5ym43sdgqg1424s7pgz0jchqn19i73srsrl4icbizdig9c7"; depends=[argparse bigstatsr crlmm data_table doParallel ff HDF5Array igraph impute jsonlite plyr reshape2 rjson RnBeads RnBeads_hg19 snpStats UpSetR]; }; + MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="2.0.0"; sha256="0vcf7p585mw6avvs7rh2ffdhw2j5v9fcppdcp3a8lc99gxz2302m"; depends=[Biobase clusterProfiler depmap DOSE enrichplot ggplot2 ggrepel gridExtra msigdbr pathview reshape2]; }; + MAI = derive2 { name="MAI"; version="1.2.0"; sha256="1p2rimkrpg3r0pdd37wcr21lsbysmpvs318r477s0amvnbcqi9ni"; depends=[caret doParallel e1071 foreach future future_apply missForest pcaMethods S4Vectors SummarizedExperiment tidyverse]; }; + MAIT = derive2 { name="MAIT"; version="1.30.0"; sha256="0bhvhnxkhwjs0ilfa4y9a4wpiqg77hfpydfdx7v95fhgnwwcayii"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; }; + MANOR = derive2 { name="MANOR"; version="1.68.0"; sha256="1z0222fb2xkyi0wylcvlpzz8gdlh1174jxyv5ihz0wxxa2w07kdf"; depends=[GLAD]; }; + MAST = derive2 { name="MAST"; version="1.22.0"; sha256="1kmrqxcfzzcs8l33n9qn0vahc6wxq6ks3cjx95vg96maf2qzhzzi"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr progress reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; }; + MBASED = derive2 { name="MBASED"; version="1.30.0"; sha256="1hg8jg898zr0ighg64jzkb513vbjr1a76mc203pgh6h3gmdn56px"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; + MBAmethyl = derive2 { name="MBAmethyl"; version="1.30.0"; sha256="0kz8brk08d32b1iqp6lrwksfpwwiqbmdgni54pwy36n0n7biir9k"; depends=[]; }; + MBCB = derive2 { name="MBCB"; version="1.50.0"; sha256="1qslgqivsg8hjvyyw59d192jramla88lnx22zixm8jnjs7r4w4fi"; depends=[preprocessCore tcltk2]; }; + MBECS = derive2 { name="MBECS"; version="1.0.0"; sha256="0z9mhqg6f6gylw5q6hi0ll4nv0b5crzwp217i1n05psg8dg7wzi3"; depends=[cluster dplyr ggplot2 gridExtra limma lme4 lmerTest magrittr Matrix pheatmap phyloseq rmarkdown ruv sva tibble tidyr vegan]; }; + MBQN = derive2 { name="MBQN"; version="2.8.0"; sha256="0dml5ysapdmcf6qlv33v69007zj9bgz0gqdj4ywfwcsmjyvscdp6"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rmarkdown SummarizedExperiment xml2]; }; + MBttest = derive2 { name="MBttest"; version="1.24.0"; sha256="0ydlbn2rh7b83l6fg2qrcr6a2vx2h29mv2ifi59dnybczwx8krx1"; depends=[gplots gtools]; }; + MCbiclust = derive2 { name="MCbiclust"; version="1.20.0"; sha256="12j1ghn3gccm6nsjp1faki2ncbxhpirp8bchm42mmqava5j7rgym"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; + MDTS = derive2 { name="MDTS"; version="1.16.0"; sha256="0hsbw98i88pls8744nj6z6lar4m649jdjgqrh6k692zmh5d8n52a"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; + MEAL = derive2 { name="MEAL"; version="1.26.0"; sha256="1d1daf2xj3bwvcgwd2dbf27vmw6n5rk1kk4crc61v0dra8j9dsqf"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; }; + MEAT = derive2 { name="MEAT"; version="1.8.0"; sha256="0s0mbfl1p6w3xpv27wjy6i8gddkr8prc6fhglfmklci791gxmjja"; depends=[dplyr dynamicTreeCut glmnet impute minfi RPMM stringr SummarizedExperiment tibble wateRmelon]; }; + MEB = derive2 { name="MEB"; version="1.10.0"; sha256="02zp4zk2986xajp91rak4pg8vwxp1f78wv3qwjmc8pig5m65a22j"; depends=[e1071 SummarizedExperiment]; }; + MEDIPS = derive2 { name="MEDIPS"; version="1.48.0"; sha256="1qxg2a7jqhnbn7zvlvn4i4kjg010ab34afds2sgcsvl4qpqcj9d0"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; }; + MEDME = derive2 { name="MEDME"; version="1.56.0"; sha256="0jfqr2bc8v45j38nmk9k03p02imvmrhfbd7b2gj9zcnbj4j3z6rz"; depends=[Biostrings drc MASS]; }; + MEIGOR = derive2 { name="MEIGOR"; version="1.29.0"; sha256="1rf9l25xdgpsb9845y4azi4gda4msh8mrv1qc0wply6lqp6w0aiq"; depends=[CNORode deSolve Rsolnp snowfall]; }; + MGFM = derive2 { name="MGFM"; version="1.30.0"; sha256="0f0flpv2i6531k4vdkwljpzzljpdsyj32arf56q362vq0zpaf0k9"; depends=[annotate AnnotationDbi]; }; + MGFR = derive2 { name="MGFR"; version="1.22.0"; sha256="1v9aljss454kjqzrwzgfirqfpi59f36l9jgmfd8zwkljwgi8i6fn"; depends=[annotate biomaRt]; }; + MIGSA = derive2 { name="MIGSA"; version="1.20.0"; sha256="0ijf33z9xgqb67zhym0zn7jjfyh8kr7bvhm341b517r5igb311fb"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev jsonlite limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz vegan]; }; + MIMOSA = derive2 { name="MIMOSA"; version="1.34.0"; sha256="0j2bf365ycs5z7vprm247g22cjfsq9g9z7x4h5g90nvkzz7cbx4r"; depends=[Biobase coda data_table dplyr Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape rlang scales testthat tidyr]; }; + MIRA = derive2 { name="MIRA"; version="1.18.0"; sha256="17wxks9hbyy8hxmv0sfnd3wn1zfq33yy1p3lvbzsgzh1r2sgc2x1"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; }; + MLInterfaces = derive2 { name="MLInterfaces"; version="1.76.0"; sha256="179d19kxjipfkc40z15337x1vzqd7vz3gbmr2lw5w7x9l857ngs5"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter magrittr MASS mlbench pls RColorBrewer Rcpp rpart sfsmisc shiny threejs]; }; + MLP = derive2 { name="MLP"; version="1.44.0"; sha256="169ck10y0md887x0agigbrzsdncd50sxxwrm17iz6qais9adikqa"; depends=[AnnotationDbi gplots]; }; + MLSeq = derive2 { name="MLSeq"; version="2.14.0"; sha256="0ajkxa6wm215df6i8y7z9ha68m25p5kg5hzk2ni4v07w6mn3cikj"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma pamr plyr sSeq SummarizedExperiment testthat VennDiagram xtable]; }; + MMAPPR2 = derive2 { name="MMAPPR2"; version="1.10.0"; sha256="1w8ajra7ip9yfmzinvdgxcm1n808saj0shfx0irflmz54a829kfr"; depends=[Biobase BiocGenerics BiocParallel data_table dplyr ensemblVEP GenomeInfoDb GenomicRanges gmapR IRanges magrittr Rsamtools S4Vectors stringr tidyr VariantAnnotation VariantTools]; }; + MMDiff2 = derive2 { name="MMDiff2"; version="1.24.0"; sha256="031d3j2d6rqj5adaflbhq1q40h1573mg44vxk07hg3ky6w55mv82"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; + MMUPHin = derive2 { name="MMUPHin"; version="1.10.0"; sha256="1ljrlnbp12n4fkhnp4id1rvz790vigmrk3hlyk2nziv8vz5m6j41"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor tidyr]; }; + MODA = derive2 { name="MODA"; version="1.22.0"; sha256="1aa5g2zy251q3rpy83c4siyvdnrzw5cb3a136qrxd69z6pfpnkx3"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; + MOFA2 = derive2 { name="MOFA2"; version="1.6.0"; sha256="1cdx2zgmicn5qa59x794mjcnz9csgmsscl21qd9yhwc5n9fj0zqw"; depends=[basilisk corrplot cowplot DelayedArray dplyr forcats ggplot2 ggrepel HDF5Array magrittr pheatmap RColorBrewer reshape2 reticulate rhdf5 Rtsne stringi tidyr uwot]; }; + MOGAMUN = derive2 { name="MOGAMUN"; version="1.6.0"; sha256="1wgpr6ci1hmzl1racszxfvgk95q5x4ca21rxhimimgag1gkk472b"; depends=[BiocParallel igraph RCy3 RUnit stringr]; }; + MOMA = derive2 { name="MOMA"; version="1.8.0"; sha256="1fkmjaja97lnicxd6inwas5hfvpl0nz3my1cryidkc2ycsmslk8s"; depends=[circlize cluster ComplexHeatmap dplyr ggplot2 magrittr MKmisc MultiAssayExperiment qvalue RColorBrewer readr reshape2 rlang stringr tibble tidyr]; }; + MOSim = derive2 { name="MOSim"; version="1.10.0"; sha256="0vvigfn830z4cqgywglk6fd8vxakf68l9k076l5a7c52zq5l2vsl"; depends=[Biobase dplyr ggplot2 HiddenMarkov IRanges lazyeval matrixStats purrr rlang S4Vectors scales stringi stringr tibble tidyr zoo]; }; + MPFE = derive2 { name="MPFE"; version="1.32.0"; sha256="10s0lyga44c1xnpv269sifhir1r208gf5p5ww41y6wp42rnr9shl"; depends=[]; }; + MPRAnalyze = derive2 { name="MPRAnalyze"; version="1.14.0"; sha256="0pxp5k38fqxx8ncr8v1qv4mnckjyypq8s49h2vb64x7hrdiygvbx"; depends=[BiocParallel progress SummarizedExperiment]; }; + MQmetrics = derive2 { name="MQmetrics"; version="1.4.0"; sha256="0fyh9pqrfjav3ygvjvg90jv3vw81ngsxpgmkdwvdwpzrmqn2ngp9"; depends=[cowplot dplyr ggforce gghalves ggplot2 ggpubr ggrepel gridExtra gtable knitr magrittr plyr purrr RColorBrewer readr reshape2 rlang rmarkdown scales stringr tidyr]; }; + MSA2dist = derive2 { name="MSA2dist"; version="1.0.0"; sha256="075zq2rdxdjs7a777nxwqm0jm7g6qfvnijfrdrk3pckqg34z83bn"; depends=[ape Biostrings doParallel dplyr foreach GenomicRanges IRanges Rcpp RcppThread rlang seqinr stringi stringr tibble tidyr]; }; + MSPrep = derive2 { name="MSPrep"; version="1.6.0"; sha256="1g0kd405iypvl0vkc190a1mm4gf17pdvk32ij3m23d03pz6qsdpg"; depends=[crmn dplyr magrittr missForest pcaMethods preprocessCore rlang S4Vectors stringr SummarizedExperiment sva tibble tidyr VIM]; }; + MSnID = derive2 { name="MSnID"; version="1.30.0"; sha256="1yiw95p40nz0pvq7s4i0xg02r9yqmnknak00z4lkw8jij3w3rkkq"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics BiocStyle Biostrings data_table doParallel dplyr foreach ggplot2 iterators msmsTests MSnbase mzID mzR ProtGenerics purrr R_cache Rcpp reshape2 rlang RUnit stringr tibble xtable]; }; + MSnbase = derive2 { name="MSnbase"; version="2.22.0"; sha256="1xzn0k3c2wn6c6gv90hddy3c201sg927342zrw9ig2xap0r053x3"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS MsCoreUtils mzID mzR pcaMethods plyr ProtGenerics Rcpp S4Vectors scales vsn XML]; }; + MSstats = derive2 { name="MSstats"; version="4.4.0"; sha256="1mzqimqb9a0dqjyhna8fsibgzxilvj14vc2vq55pq4px8k0n5jdl"; depends=[checkmate data_table ggplot2 ggrepel gplots limma lme4 marray MASS MSstatsConvert preprocessCore Rcpp RcppArmadillo survival]; }; + MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.6.0"; sha256="01rh07a5ibk3fn7dvmmj4665xki03jvlybv40sa0fzf25z07nsfg"; depends=[checkmate data_table log4r stringi]; }; + MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.4.0"; sha256="177fz522fx2bph66gm945jrg5wvr7cz98n0wbn7ndym85v6dql32"; depends=[ggplot2 minpack_lm Rcpp]; }; + MSstatsLiP = derive2 { name="MSstatsLiP"; version="1.2.1"; sha256="1yx686wk5ykl31qq3fxcsvh8bw5hrv3yiqrkc1jngxjph1xzx2bg"; depends=[Biostrings checkmate data_table dplyr factoextra ggplot2 ggpubr gridExtra MSstats MSstatsConvert MSstatsPTM purrr Rcpp scales stringr tibble tidyr tidyverse]; }; + MSstatsPTM = derive2 { name="MSstatsPTM"; version="1.6.0"; sha256="1zpgisvnnqnp9x1ylzfkhdw2z3d9vfgig560xjl5vwmj3vhix7i3"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringr]; }; + MSstatsQC = derive2 { name="MSstatsQC"; version="2.14.0"; sha256="0bgkwgcghdmccza7f4fkza3drjarl3b3prbzq7kf88k7k7zvknzr"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; }; + MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.16.0"; sha256="0nrhqznkg61vmv9g3zly0p26dvkbcf4lqx48yj9k8rbrfkg06bdk"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; }; + MSstatsSampleSize = derive2 { name="MSstatsSampleSize"; version="1.10.0"; sha256="09cclwrf2s0ld3cvvs0drkfk8xgq6la9cc9mqn4kjw355zqwb7lp"; depends=[BiocParallel caret ggplot2 gridExtra MSstats reshape2]; }; + MSstatsTMT = derive2 { name="MSstatsTMT"; version="2.4.0"; sha256="16x6mjn1xcbkqb6aymwgcawadpvcaf8bw7y475hk041n1bcl57yk"; depends=[checkmate data_table ggplot2 limma lme4 lmerTest MSstats MSstatsConvert]; }; + MVCClass = derive2 { name="MVCClass"; version="1.70.0"; sha256="0apcjlq4i2mg8mlfqgvlcsqkiy51whzid3nd0m830jff0ywgh47g"; depends=[]; }; + MWASTools = derive2 { name="MWASTools"; version="1.20.0"; sha256="17j82k7nrw8lsvvzlzaq6134gckkrxgff3yi8s4jwlzi1grzgjc7"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; + Maaslin2 = derive2 { name="Maaslin2"; version="1.10.0"; sha256="1qw2vmxg5z8lirj2pknfsybn9vhrifqh3j7p2xyhnjsbsfw5ix70"; depends=[biglm car chemometrics cplm data_table dplyr edgeR ggplot2 glmmTMB hash lme4 lmerTest logging lpsymphony MASS metagenomeSeq optparse pbapply pcaPP pheatmap pscl robustbase vegan]; }; + Macarron = derive2 { name="Macarron"; version="1.0.0"; sha256="03mkvs3wwhs3xbyqm62db6x3r8djw57bkmrv1sxvz437khn12szp"; depends=[BiocParallel data_table DelayedArray dynamicTreeCut ff logging Maaslin2 plyr psych RCurl RJSONIO SummarizedExperiment WGCNA xml2]; }; + MantelCorr = derive2 { name="MantelCorr"; version="1.66.0"; sha256="1gkf6i63933ip5w41ba146d9sa3zxrq212cvk5pbma7mcflb4hdc"; depends=[]; }; + MassArray = derive2 { name="MassArray"; version="1.48.0"; sha256="1pa4mavjbd015cjmjy5kzzzkv60268a5yifzxhrdskjjigg6jd0k"; depends=[]; }; + MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.62.0"; sha256="0g9izdy3f7h1zmsfbq45ahdz0ak5013rp3vxc4ijb1mpqx8ldd39"; depends=[]; }; + MatrixGenerics = derive2 { name="MatrixGenerics"; version="1.8.0"; sha256="0s7s39v9lqniirjgp8lbmffw0c8rsp6bndgzy1zlyh5vivfih0f5"; depends=[matrixStats]; }; + MatrixQCvis = derive2 { name="MatrixQCvis"; version="1.4.0"; sha256="11d8w1w2vy4wwvyd7wxg65j0jlfwk19ys5q1cfwmizlr048mhnv5"; depends=[ComplexHeatmap dplyr ggplot2 Hmisc htmlwidgets impute imputeLCMD limma openxlsx pcaMethods plotly proDA rlang rmarkdown Rtsne S4Vectors shiny shinydashboard shinyhelper shinyjs SummarizedExperiment tibble tidyr umap UpSetR vegan vsn]; }; + MatrixRider = derive2 { name="MatrixRider"; version="1.28.0"; sha256="1x35yjmgrnp327na3wnj7m42v71kgjhja3c80535042vgj6rilqp"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; + MeSHDbi = derive2 { name="MeSHDbi"; version="1.32.0"; sha256="07mcs3hj8z8bij09l58805rjff54d5599b12gxli56v2b5lk2ksw"; depends=[AnnotationDbi Biobase RSQLite]; }; + MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.68.0"; sha256="165chxcqbklamrrx6c2dmvxf4gj0mbmxy4wa3yxkn8kx9rxazn3f"; depends=[]; }; + Melissa = derive2 { name="Melissa"; version="1.12.0"; sha256="1acf89vy246gzs3xpnl1khc0jp8i7gh503r6f64a5452jpmwmbbh"; depends=[assertthat BiocStyle BPRMeth cowplot data_table doParallel foreach GenomicRanges ggplot2 magrittr matrixcalc mclust MCMCpack mvtnorm ROCR truncnorm]; }; + Mergeomics = derive2 { name="Mergeomics"; version="1.24.0"; sha256="1r2bx5w3xxamdzgnijffqn6rfw69320hk0glrsm9abssnfh1aygc"; depends=[]; }; + MesKit = derive2 { name="MesKit"; version="1.6.0"; sha256="1484x2sbbliiyjfmdx0kl11h24rgjd5xyzl34d3d2q56dgpf8plr"; depends=[AnnotationDbi ape Biostrings circlize ComplexHeatmap cowplot data_table dplyr ggplot2 ggrepel ggridges IRanges mclust phangorn pracma RColorBrewer S4Vectors tidyr]; }; + MetCirc = derive2 { name="MetCirc"; version="1.26.0"; sha256="09skarxg69c3h0cgabm5rib10w6bkhxb8bjwdr6vsq1snzrw2p0n"; depends=[amap circlize ggplot2 MSnbase S4Vectors scales shiny]; }; + MetID = derive2 { name="MetID"; version="1.14.0"; sha256="02i4n39zar5ybzz0l051ik835q4yf4cps7hsv2yyna3misp22gpa"; depends=[ChemmineR devtools igraph Matrix stringr]; }; + MetNet = derive2 { name="MetNet"; version="1.14.0"; sha256="01vm4km6xs55nkw7gbvf73c55x0izi4kfc58ppcd5bjgsmwvzw0k"; depends=[BiocParallel bnlearn dplyr GeneNet GENIE3 ggplot2 parmigene psych rlang S4Vectors stabs SummarizedExperiment tibble tidyr]; }; + MetaCyto = derive2 { name="MetaCyto"; version="1.18.0"; sha256="0l5q6hiz9hjjpd8y255v34487yv7ianfq8rd7py76686l9l82rya"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; + MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.16.0"; sha256="1fjggizwmm2db4plqqcfk49rvsm6jy116lb2sbyzvhs3bmp8nrx7"; depends=[beanplot dplyr ggplot2 gplots igraph Matrix matrixStats RColorBrewer SingleCellExperiment SummarizedExperiment tibble tidyr]; }; + MetaVolcanoR = derive2 { name="MetaVolcanoR"; version="1.10.0"; sha256="0mdjl3vvf4ymc7rg9r08dgq0n0n7wc4lgz6ayjhp049ar0ry8yhr"; depends=[cowplot data_table dplyr ggplot2 htmlwidgets metafor metap plotly rlang tidyr topconfects]; }; + Metab = derive2 { name="Metab"; version="1.30.0"; sha256="1hy9h8q61did3j3md72gdjsnxv6x7vgkqidaffn8c66xcbc98pw5"; depends=[pander svDialogs xcms]; }; + MetaboAnnotation = derive2 { name="MetaboAnnotation"; version="1.0.0"; sha256="08xdp7s5c4xb9qhg91mgyb07d21l327bjyqzvrnwbn8ynkqyv3wh"; depends=[BiocGenerics BiocParallel MetaboCoreUtils MsCoreUtils ProtGenerics QFeatures S4Vectors Spectra SummarizedExperiment]; }; + MetaboCoreUtils = derive2 { name="MetaboCoreUtils"; version="1.4.0"; sha256="0lvc8hzn0czzrz01hwkkhrsshq5k5nikc5irn6hbi3sv93r2bzka"; depends=[MsCoreUtils]; }; + MetaboSignal = derive2 { name="MetaboSignal"; version="1.26.0"; sha256="03gcz41mzlkgr12krswvav1wbwv3hxvqrzkgamvriq8rq80q2pdc"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; + MethPed = derive2 { name="MethPed"; version="1.24.0"; sha256="145pm17h164qqj4vhdrgrqqj5j1axls0841c6ikz5yp0l13065ij"; depends=[Biobase randomForest]; }; + MethReg = derive2 { name="MethReg"; version="1.6.0"; sha256="1133ndj4q6ddmq6rjjljj8f01zrh5rn09pgj6g0yp4yfpymbkj04"; depends=[AnnotationHub DelayedArray dplyr ExperimentHub GenomicRanges ggplot2 ggpubr IRanges MASS Matrix plyr progress pscl readr rlang S4Vectors sesame sesameData sfsmisc stringr SummarizedExperiment tibble tidyr]; }; + MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.28.0"; sha256="06cvyic6y1g6j397j9xvsqhjhwlarldxqfg28i00ym6l6hzcad4l"; depends=[Biostrings gplots seqinr stringr]; }; + MethylAid = derive2 { name="MethylAid"; version="1.30.0"; sha256="02m1f64734akq7fjklxlckxh0jvw6qvkwkcy86fnn4kp06z28vcq"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; }; + MethylMix = derive2 { name="MethylMix"; version="2.26.0"; sha256="1fdsia49km7rha9m05zn37arjdxhvji4hb5zf6s1fapfy9nvlfyy"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; }; + MethylSeekR = derive2 { name="MethylSeekR"; version="1.36.0"; sha256="141ms4dy49pvfkvhrkvpffx3wcn68zz2c99cxajhymv7346qi9sz"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; }; + Mfuzz = derive2 { name="Mfuzz"; version="2.56.0"; sha256="0rz5gpw3p2qcghi1gd3sdxcbwm0f2b4hqdr461wlz0r0dbnnwhh4"; depends=[Biobase e1071 tkWidgets]; }; + MiChip = derive2 { name="MiChip"; version="1.50.0"; sha256="10z06f0i41yckxvs32hnd6k1q5l4fvdvr27rgjrkk817k14shn59"; depends=[Biobase]; }; + MiPP = derive2 { name="MiPP"; version="1.68.0"; sha256="080cc1y32yi046xsj05vppp1l3c2sdyjclw8p439kmakcrf0sigf"; depends=[Biobase e1071 MASS]; }; + MiRaGE = derive2 { name="MiRaGE"; version="1.38.0"; sha256="0w4c41izigparfaddj5ffccxw7v33gc11zh0b1cdyz2hacmw03ly"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; + MicrobiomeProfiler = derive2 { name="MicrobiomeProfiler"; version="1.2.0"; sha256="0czli81lqbx1xkhj5yqlixjgszk4whvckhjpw9k70ggcx9svc249"; depends=[clusterProfiler config DT enrichplot ggplot2 golem htmltools magrittr shiny shinycustomloader shinyWidgets]; }; + MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.8.0"; sha256="18x5dic3g60irn5xqn7hn84kfnyfm9yi9a033366k8wfws6sixpm"; depends=[ape Biostrings coin dplyr dtplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree ggtreeExtra magrittr MASS patchwork pillar rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; + MineICA = derive2 { name="MineICA"; version="1.36.0"; sha256="0lwpykysp8arq6rhfq9w6w5phxmj41lk8xg473b2n4pcfc6sh34h"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; + MinimumDistance = derive2 { name="MinimumDistance"; version="1.40.0"; sha256="0409nqlhjnx0l8zcy71zrawjbml1rmjkgch9a87zcc1j2phnpdch"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; + MobilityTransformR = derive2 { name="MobilityTransformR"; version="1.0.0"; sha256="0x3xxh54sdlb6dan9rrrg116vfr1q4b0z9fdjaqh52qbwchy1x82"; depends=[MetaboCoreUtils MSnbase Spectra xcms]; }; + ModCon = derive2 { name="ModCon"; version="1.4.0"; sha256="1av9ragz32ss6y0hh36hc8zldg5qmgz4kxjkgi649v2l2fb5yn8h"; depends=[data_table]; }; + Modstrings = derive2 { name="Modstrings"; version="1.12.0"; sha256="0qdyf2yx2w497l77m1bp0sgkgb937fkp2hhrx37f1vvl146raizv"; depends=[BiocGenerics Biostrings crayon GenomicRanges IRanges S4Vectors stringi stringr XVector]; }; + MoonlightR = derive2 { name="MoonlightR"; version="1.22.0"; sha256="1yigaiychilz0v847vvqwxdgn5gcfxih1nxf7586g0w9g147srd9"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; + Motif2Site = derive2 { name="Motif2Site"; version="1.0.0"; sha256="1lrzl082gb2l2y5skmra9kl2rns19xdbxaw5cki3n7831s476kq2"; depends=[BiocGenerics Biostrings BSgenome edgeR GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS mixtools S4Vectors]; }; + MotifDb = derive2 { name="MotifDb"; version="1.38.0"; sha256="1cyfz0l0yvdii3idaiq5w39yzxlzfpifa4v5pv7hdjfjj83a8rbi"; depends=[BiocGenerics Biostrings GenomicRanges IRanges rtracklayer S4Vectors splitstackshape]; }; + MouseFM = derive2 { name="MouseFM"; version="1.6.0"; sha256="1z5qlkcgjrj2hhjqh5zirp940brsc92c9ss28f4fq35j2x4zhmx5"; depends=[biomaRt curl data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gtools httr IRanges jsonlite reshape2 rlist scales tidyr]; }; + MsBackendMassbank = derive2 { name="MsBackendMassbank"; version="1.4.0"; sha256="1jabh2xr27c12628bfsn6jywbygmisaggvkvazaf8qx14xdi5d7c"; depends=[BiocParallel DBI IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; }; + MsBackendMgf = derive2 { name="MsBackendMgf"; version="1.4.0"; sha256="1m06akw50rrpj5h3r78a5c4cbq52j8ni5kkk1fw7221z8j65sy8c"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; + MsBackendMsp = derive2 { name="MsBackendMsp"; version="1.0.0"; sha256="0p6df64w9d79i7xzwg19pqwn074slfp2izh7hiflncdxffp412i1"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; + MsBackendRawFileReader = derive2 { name="MsBackendRawFileReader"; version="1.2.0"; sha256="1zlgdj7ycf3is9wv5w0fbrzf4w7fh3k21id1s6gwr5zdws9zbhs6"; depends=[BiocParallel IRanges MsCoreUtils rawrr S4Vectors Spectra]; }; + MsCoreUtils = derive2 { name="MsCoreUtils"; version="1.8.0"; sha256="077x1zcy27x8akmagjn75j97082cgnahrbfw0qx08q455m5x3xzh"; depends=[clue MASS Rcpp S4Vectors]; }; + MsFeatures = derive2 { name="MsFeatures"; version="1.4.0"; sha256="111iqcq4q315pb4j8z427shin9b00p179m2s9h6dd7imvbd68yq3"; depends=[MsCoreUtils ProtGenerics SummarizedExperiment]; }; + MuData = derive2 { name="MuData"; version="1.0.0"; sha256="11plrz8mfaj1nrw6igxxk6hmrhnxyfs7cw3bmj3f1fg6sa9nr76j"; depends=[DelayedArray Matrix MultiAssayExperiment rhdf5 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + Mulcom = derive2 { name="Mulcom"; version="1.46.0"; sha256="1fs3wl9x7ww6q15ichi3jxfjvafsa2vdghds948vwwn9jpv79bhc"; depends=[Biobase fields]; }; + MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.22.0"; sha256="1wnp52l9vifxn1wzqgndzp9b6ih0s1cflxx1fhw32k32d05cw9q1"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; + MultiBaC = derive2 { name="MultiBaC"; version="1.6.0"; sha256="028jc5kr84qi9m38g6xqf7cizif2qzg2j4ypvyav7syqb9n0927s"; depends=[ggplot2 Matrix MultiAssayExperiment pcaMethods plotrix ropls]; }; + MultiDataSet = derive2 { name="MultiDataSet"; version="1.24.0"; sha256="0rfs6jkzh1i4mj1pgfk4lwzmcl8pcwizra3q3282x3d8h2g98qnf"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; + MultiMed = derive2 { name="MultiMed"; version="2.18.0"; sha256="1cdkkspmwn67d685kgna8fr9w3mqrzg6qbv6vzr81knrwmhgxp1z"; depends=[]; }; + MungeSumstats = derive2 { name="MungeSumstats"; version="1.4.0"; sha256="1wypz2q6f6kijsnp508xljkma4kwb2gyzs6p6ci3s99amx901z96"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges googleAuthR httr jsonlite magrittr R_utils RCurl rtracklayer stringr VariantAnnotation]; }; + MutationalPatterns = derive2 { name="MutationalPatterns"; version="3.6.0"; sha256="113b2hrc0n47qz144xhky93jcm6qh6flzadq5y0plga5jrz0rnwg"; depends=[BiocGenerics Biostrings BSgenome cowplot dplyr GenomeInfoDb GenomicRanges ggalluvial ggdendro ggplot2 IRanges magrittr NMF pracma purrr RColorBrewer S4Vectors stringr tibble tidyr VariantAnnotation]; }; + NADfinder = derive2 { name="NADfinder"; version="1.20.0"; sha256="0ynwf5ij694a46qa2fl4xvvxalh8a9mh6k0gxd3dfbi692lm6ihv"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; + NBAMSeq = derive2 { name="NBAMSeq"; version="1.12.0"; sha256="0rgyhijlv7knnb5z2zswxdicyblrxrnyliw1hlppdwsjwjyd3ixj"; depends=[BiocParallel DESeq2 genefilter mgcv S4Vectors SummarizedExperiment]; }; + NBSplice = derive2 { name="NBSplice"; version="1.14.0"; sha256="1hkcjn1icc6rmg13gnkya6xsmxa71pggdc9fzg8i47bs4cw0y6fb"; depends=[BiocParallel car edgeR ggplot2 MASS mppa reshape2]; }; + NCIgraph = derive2 { name="NCIgraph"; version="1.44.0"; sha256="15srh42yrax35kkxiansx9aabraifyh70dxv17fg0vkf9pdndxic"; depends=[graph KEGGgraph R_methodsS3 RBGL RCy3]; }; + NOISeq = derive2 { name="NOISeq"; version="2.40.0"; sha256="0ah6adlhv4254jkssinn2ik8n811hd1nw85bnzqk2kwhl49nrk27"; depends=[Biobase Matrix]; }; + NPARC = derive2 { name="NPARC"; version="1.8.0"; sha256="1c9zi2a3jki589brg09hzmlzqxzlnq2xwd1674v0vrc70d99ybs9"; depends=[BiocParallel broom dplyr magrittr MASS rlang tidyr]; }; + NTW = derive2 { name="NTW"; version="1.46.0"; sha256="1nqf9nm86lirwrzn6mipj9y7j9zi2jl4675y66k92pvdh0cvcyxx"; depends=[mvtnorm]; }; + NanoMethViz = derive2 { name="NanoMethViz"; version="2.2.0"; sha256="0qxk3zhpd5axyzh5sa1dvvls386dzjmas2xkf0gpkgjyq4c7p2l1"; depends=[AnnotationDbi assertthat BiocSingular bsseq cpp11 data_table dplyr e1071 forcats fs GenomicRanges ggplot2 glue limma patchwork purrr Rcpp readr rlang Rsamtools RSQLite S4Vectors scales scico stringr SummarizedExperiment tibble tidyr withr zlibbioc]; }; + NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.26.0"; sha256="0kqhdcqaikvrnfnw24m0sk569674zv3rvq345ysnmgyhj7xw3vpv"; depends=[Biobase matrixStats Rcpp]; }; + NanoStringNCTools = derive2 { name="NanoStringNCTools"; version="1.4.0"; sha256="19ah6rlqahkrb02zm2hrbdkz4z7rdpgzg6rm77q5pras9q6r75c7"; depends=[Biobase BiocGenerics Biostrings ggbeeswarm ggiraph ggplot2 ggthemes IRanges pheatmap RColorBrewer S4Vectors]; }; + NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.28.0"; sha256="1vjhxzi4d66kmsm22dwbzq9w5i7y7ldfh41krb2755q23f7pd4rs"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; }; + NanoTube = derive2 { name="NanoTube"; version="1.2.0"; sha256="0f50xb155dwxkzvirqhz1l4iqbs8m6qp6klihjlww12yhv967b67"; depends=[Biobase fgsea ggplot2 limma reshape]; }; + Nebulosa = derive2 { name="Nebulosa"; version="1.6.0"; sha256="0i37bsvppfn2djivg7hnvpjxnw0h42cxa31590w18c0mjgy7a553"; depends=[ggplot2 ks Matrix patchwork Seurat SingleCellExperiment SummarizedExperiment]; }; + NeighborNet = derive2 { name="NeighborNet"; version="1.14.0"; sha256="0s0aqnd91jylkkcrwm00dmvfd25fyfzdb7n0y0kbnc8d5m8njqkq"; depends=[graph]; }; + NetPathMiner = derive2 { name="NetPathMiner"; version="1.32.0"; sha256="10rgiy57ifmvz0m7z35q0xighxj4wnb0gvak45s249wagishppji"; depends=[igraph]; }; + NetSAM = derive2 { name="NetSAM"; version="1.36.0"; sha256="1vc4qnjr1qwcws3z5a665y790f5nw4ipv6ld5lzr5vdq09sxd5gr"; depends=[AnnotationDbi biomaRt DBI doParallel foreach GO_db igraph R2HTML seriation survival WGCNA]; }; + NeuCA = derive2 { name="NeuCA"; version="1.2.0"; sha256="0x2q7la9b3nfwlca0vnrkgankwpsrch2jhglrjn7qvnmc1zlk99p"; depends=[e1071 keras limma SingleCellExperiment]; }; + NewWave = derive2 { name="NewWave"; version="1.6.0"; sha256="1k4zyvylkidnkkqgjcqk1w43sx93ss86h6bsa62h7qa9186wxivb"; depends=[BiocSingular DelayedArray irlba Matrix SharedObject SingleCellExperiment SummarizedExperiment]; }; + NoRCE = derive2 { name="NoRCE"; version="1.8.0"; sha256="17awsr3l50p4isfpmvw1v6mk8lygc8xrhwdxgqp1icbng5i620j2"; depends=[AnnotationDbi biomaRt DBI dbplyr dplyr GenomicFeatures GenomicRanges ggplot2 GO_db igraph IRanges KEGGREST png RCurl reactome_db readr reshape2 RSQLite rtracklayer rWikiPathways S4Vectors SummarizedExperiment tidyr zlibbioc]; }; + NormalyzerDE = derive2 { name="NormalyzerDE"; version="1.14.0"; sha256="13z5vgnmx6d85ygb1hj3s24mq4jcnfhx6pgigi9ha73p8rimixs8"; depends=[ape Biobase car ggforce ggplot2 limma MASS matrixStats preprocessCore raster RcmdrMisc SummarizedExperiment vsn]; }; + NormqPCR = derive2 { name="NormqPCR"; version="1.42.0"; sha256="1jrif7cqippczyzf3nszbwxn0a58fvlmkcwb9as0ymv9qvh372vx"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; }; + NuPoP = derive2 { name="NuPoP"; version="2.4.0"; sha256="0gxanqk1xarjgnczll3fj48hx0b7iizkixy8z94d3q28y5zcqvfz"; depends=[]; }; + NxtIRFcore = derive2 { name="NxtIRFcore"; version="1.2.0"; sha256="0qvv2yp6y9aylmhv9y640xqqx47ck5gazwnki4x5fwgb0f5v0jc0"; depends=[AnnotationHub BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats fst genefilter GenomeInfoDb GenomicRanges ggplot2 HDF5Array IRanges magrittr NxtIRFdata plotly R_utils Rcpp RcppProgress rhdf5 rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; + OCplus = derive2 { name="OCplus"; version="1.70.0"; sha256="0smrb7k510x19pgpk53xl6c8gc8bccasg6d461jwzblx01mm4l2x"; depends=[akima multtest]; }; + ODER = derive2 { name="ODER"; version="1.2.0"; sha256="1vj3l4032sbjmbi508lzhl41gr3wpyma2ch8fm7arv5csksnn20s"; depends=[BiocFileCache BiocGenerics dasper data_table derfinder dplyr GenomeInfoDb GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyr purrr rtracklayer S4Vectors stringr tibble]; }; + OGRE = derive2 { name="OGRE"; version="1.0.0"; sha256="1lm6hqi9lc5xpdgbvwcjzhcjw7qp2ympi7w17s90mmki0g36rf6x"; depends=[AnnotationHub assertthat data_table DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges rtracklayer S4Vectors shiny shinyBS shinydashboard shinyFiles tidyr]; }; + OLIN = derive2 { name="OLIN"; version="1.73.0"; sha256="0569hcy2rs6bw7z62cmldz07193p2wbm3yisgmihvq44b3q4saj1"; depends=[limma locfit marray]; }; + OLINgui = derive2 { name="OLINgui"; version="1.70.0"; sha256="0pdnxp9i08faljafy91kxg7xiv9b2fh3k5c3gqdfrvwggx3d839x"; depends=[marray OLIN tkWidgets widgetTools]; }; + OMICsPCA = derive2 { name="OMICsPCA"; version="1.14.0"; sha256="0fldppwhjijw53s6q44g92n59pfmlz5049qsmna7nzqdh06l8wh6"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; }; + OPWeight = derive2 { name="OPWeight"; version="1.18.0"; sha256="1k4qfbg29lll9hpkzbcbhfipyjn4rdpfyhm2wmr8a9jcp04fpl43"; depends=[MASS qvalue tibble]; }; + ORFhunteR = derive2 { name="ORFhunteR"; version="1.4.0"; sha256="1381knb35njc4dvbdr9jbkmyfyc87aacvham3ljmdq7llis0zz7b"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg38 data_table Peptides randomForest Rcpp rtracklayer stringr xfun]; }; + ORFik = derive2 { name="ORFik"; version="1.16.0"; sha256="06fgpxfb1wr4qg26xdbm4y5l4b10rr23zfqb8pclhjc68cpqf9yl"; depends=[AnnotationDbi BiocGenerics BiocParallel biomartr Biostrings BSgenome cowplot data_table DESeq2 fst GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra httr IRanges jsonlite R_utils Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment xml2]; }; + OSAT = derive2 { name="OSAT"; version="1.44.0"; sha256="1hd1qmxbsqr1x1k8iihji48n5dqqg0zpk0ccvgaq2qkdkf9ayp06"; depends=[]; }; + OTUbase = derive2 { name="OTUbase"; version="1.46.0"; sha256="1s41amahlqpb5gffmxd4rgdc1wwdjfzsr3jikv7flbb48965rjin"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; }; + OUTRIDER = derive2 { name="OUTRIDER"; version="1.14.0"; sha256="0app3h20d76nrrrm2yc856fsz6wvjm3rl0irlr8vfb85qws7zrfi"; depends=[BBmisc BiocGenerics BiocParallel data_table DESeq2 generics GenomicFeatures GenomicRanges ggplot2 heatmaply IRanges matrixStats pcaMethods pheatmap plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reshape2 S4Vectors scales SummarizedExperiment]; }; + OVESEG = derive2 { name="OVESEG"; version="1.12.0"; sha256="19z51p11g7a3bdr8ipq1pq7006z69n5qbfpj6xg50jbqv6vl7j6i"; depends=[BiocParallel fdrtool limma Rcpp SummarizedExperiment]; }; + OmaDB = derive2 { name="OmaDB"; version="2.12.0"; sha256="1ydpfdfa6gx2ca5damy5l806i9wjvpphz8wjzfbb3ijgza0dwl15"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; }; + OmicCircos = derive2 { name="OmicCircos"; version="1.34.0"; sha256="0644xcyk0li39xcyldqy927k06q6p6b8y07s3wl75dmd8gqwgvdp"; depends=[GenomicRanges]; }; + OmicsLonDA = derive2 { name="OmicsLonDA"; version="1.12.0"; sha256="125ijszmi6igsxhdg4kmgkc1sbsvsqk6ybqab73d1ly17w612z5q"; depends=[BiocGenerics BiocParallel ggplot2 gss plyr pracma SummarizedExperiment zoo]; }; + Omixer = derive2 { name="Omixer"; version="1.6.0"; sha256="12avwqrb27ljish8xk4gryjisa6zslx8b977k2dmgp19wm7f2f9x"; depends=[dplyr forcats ggplot2 gridExtra magrittr readr stringr tibble tidyselect]; }; + OmnipathR = derive2 { name="OmnipathR"; version="3.4.0"; sha256="0vk0fv09j3ql78mzzhdxwxb2b83qqdz2qfd8wpp1vydmcx2vvgni"; depends=[checkmate crayon curl digest dplyr httr igraph jsonlite later logger magrittr progress purrr rappdirs readr readxl rlang stringr tibble tidyr tidyselect withr xml2 yaml]; }; + OncoScore = derive2 { name="OncoScore"; version="1.24.0"; sha256="02s6y5p1ncmlbaqf4fmgkvkbf913d6czz3gd9dqfwblsycxy2cxp"; depends=[biomaRt]; }; + OncoSimulR = derive2 { name="OncoSimulR"; version="3.4.0"; sha256="0ixlyrj7112rn2dnrfx226kqxfsisi2rccan9rxfcz1l1slkjvwk"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr stringr]; }; + OpenStats = derive2 { name="OpenStats"; version="1.8.0"; sha256="08r2id3f6gx5s1va4gr6m191c9y44m2c6s5lbxr8xhrnpi4c61p0"; depends=[AICcmodavg car Hmisc jsonlite knitr MASS nlme rlist summarytools]; }; + OrderedList = derive2 { name="OrderedList"; version="1.68.0"; sha256="15085hiyqn5ci5ahc674hp1j2lszdm6gm8acs1b87rg6pp5zjl4q"; depends=[Biobase twilight]; }; + Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.24.0"; sha256="0j29f85d66c45ww3417xx376vpz0mmvga5n7h2cl1sd4h70b55as"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang RSQLite S4Vectors tibble]; }; + OrganismDbi = derive2 { name="OrganismDbi"; version="1.38.0"; sha256="1xklaiyd4mv9sf9211flq1s68fhdn53y2i4l1k2ib39a4l6y9cyr"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; }; + Oscope = derive2 { name="Oscope"; version="1.26.0"; sha256="0rbz82k96k7d8nrbcr8mnz24kq8x95yw7m55vg64i66gm5gks168"; depends=[BiocParallel cluster EBSeq testthat]; }; + PAA = derive2 { name="PAA"; version="1.30.0"; sha256="0nq79hwinz95f0rifpk18r26vfvymns8dvib0mx4jjd13k75xgzz"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; }; + PADOG = derive2 { name="PADOG"; version="1.38.0"; sha256="156w598w39gf1mc4jm0p7c7hip4vlsms7jvb3dj5h789bgr0whnq"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGGdzPathwaysGEO KEGGREST limma nlme]; }; + PAIRADISE = derive2 { name="PAIRADISE"; version="1.12.0"; sha256="1p0wyxdbhcv88x0yrg03z1ml4qx6j7544z1xpgmz1i6sxp8k18mk"; depends=[abind BiocParallel nloptr S4Vectors SummarizedExperiment]; }; + PANR = derive2 { name="PANR"; version="1.42.0"; sha256="1g3165x4zgrw0x3yacq25k9jvfnad0yi1zbkmqxccivgnxh572ah"; depends=[igraph MASS pvclust RedeR]; }; + PAST = derive2 { name="PAST"; version="1.12.0"; sha256="14kv16nwgpdb7sqx6ba41pkdxqv2vpsfn6d8fwv24c7iihl8vac9"; depends=[doParallel dplyr foreach GenomicRanges ggplot2 iterators qvalue rlang rtracklayer S4Vectors]; }; + PCAN = derive2 { name="PCAN"; version="1.24.0"; sha256="1c4rwima7jzk18ib370rnyxraknzhkpil2jh2q22qhj5sgrnkpcx"; depends=[BiocParallel]; }; + PCAtools = derive2 { name="PCAtools"; version="2.8.0"; sha256="03s4dh008fys2rrcpzanc0892p63f6jyyvzc9m42jbi1dlkyx26v"; depends=[beachmat BH BiocParallel BiocSingular cowplot DelayedArray DelayedMatrixStats dqrng ggplot2 ggrepel lattice Matrix Rcpp reshape2]; }; + PDATK = derive2 { name="PDATK"; version="1.4.0"; sha256="1psnpjii3a2hv6nrlzxn4xb5180n6wwylv0csx5akgbn3mdqwm8n"; depends=[BiocGenerics BiocParallel caret clusterRepro ConsensusClusterPlus CoreGx data_table dplyr genefu ggplot2 ggplotify igraph MatrixGenerics matrixStats MultiAssayExperiment piano plyr pROC RColorBrewer reportROC rlang S4Vectors scales SummarizedExperiment survcomp survival survminer switchBox verification]; }; + PECA = derive2 { name="PECA"; version="1.32.0"; sha256="17lhbcq9pn9zi86vpv4b6ywj91aas4cyj17qv161jb093yfx8vwq"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; }; + PERFect = derive2 { name="PERFect"; version="1.10.0"; sha256="036bvk3bbrpvg8dzikw2di76k9vmdd7i1x0hfdr24l4wdq81jaa6"; depends=[fitdistrplus ggplot2 Matrix phyloseq psych sn zoo]; }; + PFP = derive2 { name="PFP"; version="1.4.0"; sha256="1dglmiq24gmnw5lhi509d1f5w7iabgiyndr36cz7j9wzqrxnzf09"; depends=[clusterProfiler ggplot2 graph igraph KEGGgraph magrittr plyr tidyr]; }; + PICS = derive2 { name="PICS"; version="2.40.0"; sha256="04hysyaikw0dl2visnhyzvj21k6gamzsh5awlrgczaqcpxh5j7gf"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools]; }; + PING = derive2 { name="PING"; version="2.40.0"; sha256="0x75lq8igf5ppdbr7vs672cs6qi15wxrh4v5ir3qsyfv96n3i9dl"; depends=[BiocGenerics BSgenome fda GenomicRanges Gviz IRanges PICS S4Vectors]; }; + PLPE = derive2 { name="PLPE"; version="1.56.0"; sha256="07s2xgz733zr3a7z3nzvb3iimb2pb1xpixp8xwmyzi624ndms0v3"; depends=[Biobase LPE MASS]; }; + POMA = derive2 { name="POMA"; version="1.6.0"; sha256="1jd1k0kvxkinnd74kcm6yhihfal4d1b17zpwjg3m3492x2hg79dd"; depends=[broom caret ComplexHeatmap dplyr e1071 ggplot2 ggrepel glasso glmnet impute knitr limma magrittr mixOmics randomForest RankProd rmarkdown SummarizedExperiment tibble tidyr vegan]; }; + POWSC = derive2 { name="POWSC"; version="1.4.0"; sha256="071bvywmnjc08yrs912m7cfb0s9rf8rvsqyg0dnqsyh16cyc4nxw"; depends=[Biobase ggplot2 limma MAST pheatmap RColorBrewer SingleCellExperiment SummarizedExperiment]; }; + PPInfer = derive2 { name="PPInfer"; version="1.22.0"; sha256="0y7wagkskw8m22bq7sd99hqc1zn583lljqddncz2kcd8x57pims2"; depends=[biomaRt fgsea ggplot2 httr igraph kernlab STRINGdb yeastExpData]; }; + PREDA = derive2 { name="PREDA"; version="1.42.0"; sha256="10vl8d57x3hyn3145nyi2jg3fyb8xjhbgiica8fy90x6759avaqg"; depends=[annotate Biobase lokern multtest]; }; + PROMISE = derive2 { name="PROMISE"; version="1.48.0"; sha256="0pic8mvlv87hz9cmscr74vaxg4wnlsgmxlybhy4xnyzidg2cadyi"; depends=[Biobase GSEABase]; }; + PROPER = derive2 { name="PROPER"; version="1.28.0"; sha256="01frrjg3rwg2vwsg7hq27kp4k7in1y0fckz9xdfv0b0737ps7j1y"; depends=[edgeR]; }; + PROPS = derive2 { name="PROPS"; version="1.18.0"; sha256="1y2n16gnmqfp187sylh7v0fvsd4p9ij773ngviv57idwg9nrb8a1"; depends=[Biobase bnlearn reshape2 sva]; }; + PROcess = derive2 { name="PROcess"; version="1.72.0"; sha256="03ppx9zm9mvqb5r1mkrr3pxids8nllw2phqzpsb3bmz1x0yab4nh"; depends=[Icens]; }; + PSEA = derive2 { name="PSEA"; version="1.30.0"; sha256="0wdljlx7jvq78g9qp330ccqld4n9ilaaykqh527lljzc8p5vvbjx"; depends=[Biobase MASS]; }; + PSICQUIC = derive2 { name="PSICQUIC"; version="1.34.0"; sha256="0gkkxxbc2a7cin92qwn1masqfigyz9s4fhyy2daa17r3ckk4ccgx"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; + PSMatch = derive2 { name="PSMatch"; version="1.0.0"; sha256="027r2r70n9v54m6kww6bzaqvf7ahn42vh7fdbbb4m6xzbl62frmq"; depends=[BiocGenerics BiocParallel igraph Matrix MsCoreUtils ProtGenerics QFeatures S4Vectors]; }; + PWMEnrich = derive2 { name="PWMEnrich"; version="4.32.0"; sha256="031j563jcaakiasx1r8aflhqm0vq7j5628f9bv4kkyi5rhr3aix9"; depends=[BiocGenerics Biostrings evd gdata S4Vectors seqLogo]; }; + PanomiR = derive2 { name="PanomiR"; version="1.0.0"; sha256="0j5x7v2wz88bx1prhzxhj71jrwk5f72zm2kafh4h4lp77fgy8nhh"; depends=[clusterProfiler dplyr forcats GSEABase igraph limma metap org_Hs_eg_db preprocessCore RColorBrewer rlang tibble withr]; }; + Path2PPI = derive2 { name="Path2PPI"; version="1.26.0"; sha256="0csqciqavnamyhsf7hx5c6x3ranr1h8wskzz09hf7rw65gxbn6jp"; depends=[igraph]; }; + PathNet = derive2 { name="PathNet"; version="1.36.0"; sha256="1xbwzvbnjgxby7xwgpl20qnx172lpzhm5z8rm3q1n3ww0n4z7pfk"; depends=[]; }; + PathoStat = derive2 { name="PathoStat"; version="1.22.0"; sha256="1f01vrncrw50jcvaivgqpjyc6h0ccphzifcw1aq03w39nrw55mz9"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; + PeacoQC = derive2 { name="PeacoQC"; version="1.6.0"; sha256="1b2jhph8nhx9iqia6cbs84aaz7srm7fchn7r0d55fmfnzg5cdr7z"; depends=[circlize ComplexHeatmap flowCore flowWorkspace ggplot2 gridExtra plyr]; }; + PepsNMR = derive2 { name="PepsNMR"; version="1.14.0"; sha256="04q4xminxkqzc88dqyrpddzdmcnj1n4ssspk3wnraplwrxhg1kcx"; depends=[ggplot2 gridExtra Matrix matrixStats ptw reshape2]; }; + PhIPData = derive2 { name="PhIPData"; version="1.4.0"; sha256="06fc0h2jn2v6n921rmxb37rdkk60v9il9x32w1ky2n5xaiqhx3yl"; depends=[BiocFileCache BiocGenerics cli edgeR GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + PharmacoGx = derive2 { name="PharmacoGx"; version="3.0.0"; sha256="0d52zbdis7ral6ds5fkwx68d7cigwngswcx53ij3np1n9wxihrqb"; depends=[Biobase BiocGenerics BiocParallel boot caTools checkmate coop CoreGx data_table downloader ggplot2 jsonlite magicaxis MultiAssayExperiment RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment]; }; + PhenStat = derive2 { name="PhenStat"; version="2.32.0"; sha256="1g8g7452vkl06vphmmb7vv090dng58cx9v3d1vhsxsf6bzqny4ql"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; + PhenoGeneRanker = derive2 { name="PhenoGeneRanker"; version="1.4.0"; sha256="0wzf9c3iimcq8hc78ai188slbhkgzq94nmzcd4gxzlgmk44524ap"; depends=[doParallel dplyr foreach igraph Matrix]; }; + PhosR = derive2 { name="PhosR"; version="1.6.0"; sha256="0rgqr458m5hbai1jmcxv73ay74bgd44iwjz98b848qgx4imz8jp2"; depends=[BiocGenerics circlize dendextend dplyr e1071 GGally ggdendro ggplot2 ggpubr ggtext igraph limma network pcaMethods pheatmap preprocessCore RColorBrewer reshape2 rlang ruv S4Vectors SummarizedExperiment tidyr]; }; + PhyloProfile = derive2 { name="PhyloProfile"; version="1.10.1"; sha256="1fgdszy6f7iy0rzkc72mqy9nv26whq1gsx39b12gkcr3h05imihp"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinyFiles shinyjs xml2 yaml zoo]; }; + Pi = derive2 { name="Pi"; version="2.8.0"; sha256="0vpvpq7ss4x6qcz525zl71ysfh65zcqp13qym03s0v6r491gndnv"; depends=[BiocGenerics caret dnet dplyr GenomeInfoDb GenomicRanges ggnetwork ggplot2 ggrepel glmnet igraph IRanges lattice MASS Matrix osfr plot3D purrr randomForest RCircos readr ROCR scales supraHex tibble tidyr]; }; + Pigengene = derive2 { name="Pigengene"; version="1.22.0"; sha256="11bx3ivzfzh0bnmz77psz4vah0gm0vaa7pwbbkwjcra85sbzyxiz"; depends=[BiocStyle bnlearn C50 clusterProfiler DBI DOSE dplyr gdata ggplot2 GO_db graph impute MASS matrixStats openxlsx partykit pheatmap preprocessCore ReactomePA Rgraphviz WGCNA]; }; + PloGO2 = derive2 { name="PloGO2"; version="1.8.0"; sha256="1fwzim2x1yrd8jqbjg3zjnq8rpva7xnywsqmbab6cplx0qdy185s"; depends=[GO_db GOstats httr lattice openxlsx xtable]; }; + PoDCall = derive2 { name="PoDCall"; version="1.4.0"; sha256="1k47igncvcz4sqpv59148nqcinabz5ifpl6xkcrry20gvbngnrca"; depends=[diptest DT ggplot2 gridExtra LaplacesDemon mclust purrr readr rlist shiny shinyjs]; }; + PoTRA = derive2 { name="PoTRA"; version="1.12.0"; sha256="0k93zj0mfs8pkr5cnf2y7bg9ynnwwr1acylsav8dcyz8vkc9r25k"; depends=[BiocGenerics graph graphite igraph org_Hs_eg_db]; }; + PrInCE = derive2 { name="PrInCE"; version="1.12.0"; sha256="02vnpdmns14g0qhizpify2p4mzkacj31ar31jmbxzg3bcbq2nz84"; depends=[Biobase dplyr forecast Hmisc LiblineaR magrittr MSnbase naivebayes progress purrr ranger Rdpack robustbase speedglm tester tidyr]; }; + PrecisionTrialDrawer = derive2 { name="PrecisionTrialDrawer"; version="1.11.0"; sha256="1miw8rj1zn1xv97dkgs66k9g21i6gp3j2m1l1akysskczgam3i2c"; depends=[BiocParallel biomaRt brglm data_table DT GenomicRanges ggplot2 ggrepel googleVis httr IRanges jsonlite LowMACAAnnotation magrittr matrixStats RColorBrewer reshape2 S4Vectors shiny shinyBS stringr XML]; }; + Prostar = derive2 { name="Prostar"; version="1.28.0"; sha256="1av29wvikn94yw2lc4d7i3j1fyyf5s5halp54m54l4dfs5c3b920"; depends=[colourpicker DAPAR DAPARdata data_table DT future highcharter htmlwidgets later promises R_utils rhandsontable sass shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes shinyWidgets tibble webshot XML]; }; + ProtGenerics = derive2 { name="ProtGenerics"; version="1.28.0"; sha256="04hcgj4q8dbzp1a29rbww2bxxrg679pgys3m09p0ydkpsx76rq05"; depends=[]; }; + ProteoDisco = derive2 { name="ProteoDisco"; version="1.2.0"; sha256="1929aarf9al6di1r6z2n2ggdzblmfidikwswfg53nqanwwms31wa"; depends=[BiocGenerics BiocParallel Biostrings checkmate cleaver dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges ParallelLogger plyr rlang S4Vectors tibble tidyr VariantAnnotation XVector]; }; + ProteoMM = derive2 { name="ProteoMM"; version="1.14.0"; sha256="0l5h4s77bv5wj6kj0zyj517acydqvd2sbxgl2fd22c1igwj9iqyl"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; + PubScore = derive2 { name="PubScore"; version="1.8.0"; sha256="18bmzvv6mxrdlh297i29q24vi5rc4x2mjaryi5asiki186x0hy8d"; depends=[dplyr ggplot2 ggrepel igraph intergraph network progress rentrez sna]; }; + PureCN = derive2 { name="PureCN"; version="2.2.0"; sha256="1rd6a9x2jsha5l1nw2xn57q7nr7jxjg1wylnv7iib77nwrb0sjfv"; depends=[Biobase BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix mclust RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; + Pviz = derive2 { name="Pviz"; version="1.30.0"; sha256="0ipsf10h9qbpmc4jj04x5gvxkbihicza8fw3qlh5qmwj83xyw5py"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; + QDNAseq = derive2 { name="QDNAseq"; version="1.32.0"; sha256="0s360s72lfn9vjml88gg1m40n61s0dc66ilzgfjdcp65djdxxfvm"; depends=[Biobase CGHbase CGHcall DNAcopy future_apply GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; + QFeatures = derive2 { name="QFeatures"; version="1.6.0"; sha256="1yz1wh81v4d7y109kbr51gial69l0g6mv7n28askbzpn5dl4gvwp"; depends=[AnnotationFilter Biobase BiocGenerics igraph IRanges lazyeval MsCoreUtils MultiAssayExperiment plotly ProtGenerics S4Vectors SummarizedExperiment]; }; + QSutils = derive2 { name="QSutils"; version="1.14.0"; sha256="0bbyk568z0bd2pmlw28hdibbwvfhs6wgcjdvyr8az6kqpz3yg326"; depends=[ape BiocGenerics Biostrings psych]; }; + QUBIC = derive2 { name="QUBIC"; version="1.24.0"; sha256="00annp5savi5z4f7m7kwsnijmhg7z4pwfj4lapr2wpsl51kga4fj"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; + Qtlizer = derive2 { name="Qtlizer"; version="1.10.0"; sha256="023yr1szcsz8x78k2209242c21drszcmiyb7bs1n39qd2vi8ilhg"; depends=[curl GenomicRanges httr stringi]; }; + QuartPAC = derive2 { name="QuartPAC"; version="1.28.0"; sha256="1xfnnk896kng4m694rablk8gxq254d7nf5y8iz1gb0s688b20lyh"; depends=[data_table GraphPAC iPAC SpacePAC]; }; + QuasR = derive2 { name="QuasR"; version="1.36.0"; sha256="1m0c0rdakkdn4rr6dh51c6rs40cbxkvz93n6s0m2kc6fqjv9zplf"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rhtslib Rsamtools rtracklayer S4Vectors ShortRead]; }; + QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.30.0"; sha256="0cq79377z73hhcvhzv5l8frss6wz6hmf7zvjh4v9jvrk8n0p3h7g"; depends=[dplyr Rcpp yaml]; }; + R3CPET = derive2 { name="R3CPET"; version="1.28.0"; sha256="1igxbx8wvf7jgzss2zv9w8bq7pdqr8g64dqm4j9nv20gagz6sh9m"; depends=[BiocGenerics clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; }; + R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.46.0"; sha256="1vxgkhigmsk4f1cdn83rr8ysw3mj1lp0h7wjmxmm9pj97ig31v9b"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; }; + R4RNA = derive2 { name="R4RNA"; version="1.24.0"; sha256="12861114yw3dx2acqk2if5h11agfsdzl23pxzqy23gymxc1wm0z1"; depends=[Biostrings]; }; + RAREsim = derive2 { name="RAREsim"; version="1.0.0"; sha256="1q2cvjikisxzpiz9zqgldlyrz0ah19vnapn4c2p4yc1k5fqhc02f"; depends=[nloptr]; }; + RBGL = derive2 { name="RBGL"; version="1.72.0"; sha256="0ph089vxla49sng0pdwiyh9rpk9i96cbsx5q2jn46jj4x51ijc7y"; depends=[BH graph]; }; + RBM = derive2 { name="RBM"; version="1.28.0"; sha256="1yiyd78nkjh24dvj3vj86mc44bw9bb9maarji0w307bw71s94mgk"; depends=[limma marray]; }; + RBioinf = derive2 { name="RBioinf"; version="1.56.0"; sha256="1mm3i5fqvqal2y0lq2cdngy445dp8yv8rzvi59bjviwqzxp44m63"; depends=[graph]; }; + RCAS = derive2 { name="RCAS"; version="1.22.0"; sha256="05sj2ab7bxgf41gkmjaskhqm0198xlir1sw3f73x8rjg14rssmqf"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gprofiler2 IRanges knitr pbapply pheatmap plotly plotrix proxy ranger rmarkdown RSQLite rtracklayer S4Vectors]; }; + RCASPAR = derive2 { name="RCASPAR"; version="1.42.0"; sha256="0zzg0gsg6hcinskdj3625vk1pbzaxsfxf2m9d17gzc2jydjysfbz"; depends=[]; }; + RCM = derive2 { name="RCM"; version="1.12.0"; sha256="0v1dv69qlv0knaf96imi94mbpr8qz2a46hjn6rw7yfzfgsprnx7s"; depends=[alabama DBI edgeR ggplot2 MASS nleqslv phyloseq RColorBrewer reshape2 tensor tseries VGAM]; }; + RCSL = derive2 { name="RCSL"; version="1.4.0"; sha256="1b15jjd6v2slw94fd54y2xf638yrzqaw6qs4vzwan5ima6yl0bhk"; depends=[ggplot2 igraph NbClust pracma RcppAnnoy Rtsne umap]; }; + RCX = derive2 { name="RCX"; version="1.0.0"; sha256="1dm12izq57h2si7xry28p01ih7cbr7lq56rw7x5k3pr4iwzvv2lh"; depends=[igraph jsonlite plyr]; }; + RCy3 = derive2 { name="RCy3"; version="2.16.0"; sha256="0xbvi9k4lvva4njmgcjz2yjbhjp7n6if5622swnkyb01s178a7vi"; depends=[base64enc base64url BiocGenerics fs glue graph httr IRdisplay IRkernel RColorBrewer RCurl RJSONIO uchardet uuid XML]; }; + RCyjs = derive2 { name="RCyjs"; version="2.18.0"; sha256="105spxlmmr23h43hrym10h5jgizq3m5g1kmxzf42q8jzns042dqs"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; }; + RDRToolbox = derive2 { name="RDRToolbox"; version="1.46.0"; sha256="13c7701g9n6irqpfc1bcamg2pys8vsryq1y6q9mw28im73wf0caw"; depends=[MASS rgl]; }; + REBET = derive2 { name="REBET"; version="1.14.0"; sha256="03v6qdc9hz2p74s64v0vk4wxc4nkl4g465ygdnnyxk2qz99q79qa"; depends=[ASSET]; }; + REDseq = derive2 { name="REDseq"; version="1.42.0"; sha256="16iqqzk7jlwb3yzsamxmpm0424a7hphv5ajbfw9fzmsshll3q18p"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; }; + REMP = derive2 { name="REMP"; version="1.19.1"; sha256="0j95z8kbyvgdcdscvnmwkxgs16pfdh6f5h655gryfmylil1nw03g"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome caret doParallel foreach GenomeInfoDb GenomicRanges impute IRanges iterators kernlab minfi org_Hs_eg_db ranger readr rtracklayer S4Vectors settings SummarizedExperiment]; }; + RGMQL = derive2 { name="RGMQL"; version="1.16.0"; sha256="1bwcqh6hmxjwzszd2747yc9wadh1jj0dm04d9752vyf1hz5nnhkv"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; }; + RGSEA = derive2 { name="RGSEA"; version="1.30.0"; sha256="0p03fxf725c9ayk29ah48jd96ry3i0360mxphzmsdycc3sna6mrq"; depends=[BiocGenerics]; }; + RGraph2js = derive2 { name="RGraph2js"; version="1.24.0"; sha256="14ffqx419vd5qz1fbbdszvzvx4m8mqmd7sh4d0dyxy37k19l60q3"; depends=[digest graph rjson whisker]; }; + RIPAT = derive2 { name="RIPAT"; version="1.6.0"; sha256="0xqj14lgvgs2mms0khxvjl5pkacvv5b6vg5acn01dhg3bs83lbr6"; depends=[biomaRt GenomicRanges ggplot2 IRanges karyoploteR openxlsx plyr regioneR rtracklayer stringr]; }; + RITAN = derive2 { name="RITAN"; version="1.20.0"; sha256="0scn410jri1a1zr1j9kbk9884js6ps1v9a873fpzfdrrvb31dksd"; depends=[AnnotationFilter BgeeDB dynamicTreeCut EnsDb_Hsapiens_v86 ensembldb GenomicFeatures ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; }; + RIVER = derive2 { name="RIVER"; version="1.20.0"; sha256="1x02pkb7ff9zxlmwcdc8ck841bikhm8rpsn4jlkywy22s4mb074w"; depends=[Biobase ggplot2 glmnet pROC]; }; + RImmPort = derive2 { name="RImmPort"; version="1.24.0"; sha256="0ay2604wdksppbhgrd9zig380r7392zjaypfv6gd011wjh8gh05f"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; }; + RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.20.0"; sha256="0m8rsvlyicp2bk6ax5sfssw6378z42d9bdp22v3j33vii3mla1fi"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; }; + RLMM = derive2 { name="RLMM"; version="1.58.0"; sha256="0rmir7ab8bs45c1q49yf6apx9i4sr673b33zw12hmp76zlgabwsi"; depends=[MASS]; }; + RLSeq = derive2 { name="RLSeq"; version="1.2.0"; sha256="0lka8q9hpv3kx8xlx6glsdhc1z7y0ihfdi2qglsggy4iyzdnav0d"; depends=[AnnotationHub aws_s3 callr caretEnsemble circlize ComplexHeatmap dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggplotify ggprism pheatmap RColorBrewer regioneR RLHub rtracklayer valr VennDiagram]; }; + RLassoCox = derive2 { name="RLassoCox"; version="1.4.0"; sha256="19kvnhxwvw652cng9ngq2d9dnfaqxxd9qjsvhaqv8kb4kz2r9bfb"; depends=[glmnet igraph Matrix survival]; }; + RMassBank = derive2 { name="RMassBank"; version="3.5.4"; sha256="05lkk38h8p7hx2ymm2ry946wmqkvkkfc7qp0fa8wjsqibq13qim6"; depends=[assertthat Biobase ChemmineOB ChemmineR data_table digest enviPat httr logger MSnbase mzR R_utils rcdk Rcpp RCurl readJDX rjson S4Vectors webchem XML yaml]; }; + RNAAgeCalc = derive2 { name="RNAAgeCalc"; version="1.8.0"; sha256="10d320bcdmn6mzcvivbphygnirs1znf1rnmirhzl1f978m50jp9j"; depends=[AnnotationDbi ggplot2 impute org_Hs_eg_db recount SummarizedExperiment]; }; + RNASeqPower = derive2 { name="RNASeqPower"; version="1.36.0"; sha256="0bv9xkkg30vr9lmybiialh0mimcvmcrsf0wm23r6jsmm8pqgv7wd"; depends=[]; }; + RNAdecay = derive2 { name="RNAdecay"; version="1.16.0"; sha256="0skv7hx83yq9c426am81555imdbbkysckv8py5ng3q56r67cgy45"; depends=[ggplot2 gplots nloptr scales TMB]; }; + RNAinteract = derive2 { name="RNAinteract"; version="1.44.0"; sha256="1f0kvpmkq6djfr6qx95fhmb2wblzz0iaffwwrqi6ibwbp4s3dmzv"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; }; + RNAmodR = derive2 { name="RNAmodR"; version="1.10.0"; sha256="0nih7ix5bw9zc7grlw8a0yipx15r6n9ias1y30i6gr0z612whv6g"; depends=[BiocGenerics BiocParallel Biostrings BSgenome colorRamps GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges matrixStats Modstrings RColorBrewer reshape2 ROCR Rsamtools rtracklayer S4Vectors]; }; + RNAmodR_AlkAnilineSeq = derive2 { name="RNAmodR.AlkAnilineSeq"; version="1.10.0"; sha256="0qdh9h4vw0fc3dnsm1mb232pladp5hc0k8irxdmrs5akfqfcfc29"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; + RNAmodR_ML = derive2 { name="RNAmodR.ML"; version="1.10.0"; sha256="17br1v3v36h11b3hc3qnxdic9zk2q5g8p99h2350nhq54z54g9j3"; depends=[BiocGenerics GenomicRanges IRanges ranger RNAmodR S4Vectors]; }; + RNAmodR_RiboMethSeq = derive2 { name="RNAmodR.RiboMethSeq"; version="1.10.0"; sha256="1g4ds43xaw6rzj5jxnahkbgpgarfjp4mygh8q5a80b7zi8z4w948"; depends=[BiocGenerics GenomicRanges Gviz IRanges RNAmodR S4Vectors]; }; + RNAsense = derive2 { name="RNAsense"; version="1.10.0"; sha256="19r4vvz9mj1jw5cw1afs4sx010vd2ssz2c4qspi2y6x12gnbhmnf"; depends=[ggplot2 NBPSeq qvalue SummarizedExperiment]; }; + ROC = derive2 { name="ROC"; version="1.72.0"; sha256="0yfq0d0j2bzqdnjs6l2h6p48kmv9wfphlqym3brgndlnadipq1v2"; depends=[knitr]; }; + ROCpAI = derive2 { name="ROCpAI"; version="1.8.0"; sha256="0vakvv2n5pzsfyy0iryafysrwrpzl15mg1wq1qs8y7hrrpc18cry"; depends=[boot fission knitr SummarizedExperiment]; }; + ROSeq = derive2 { name="ROSeq"; version="1.8.0"; sha256="00cp1293359s3h73xwjfnhdvl04h61f5jjbkzqan2q59j8bc5n92"; depends=[edgeR limma pbmcapply]; }; + ROTS = derive2 { name="ROTS"; version="1.24.0"; sha256="021a578p8kcl5yd9myiy0h2qp10r30ggnip2kp6xs7dx8nzic96r"; depends=[Biobase Rcpp]; }; + ROntoTools = derive2 { name="ROntoTools"; version="2.24.0"; sha256="1p84vx25lgynsbb7ng62wmbhjhk2qippfpar9nsbv7vhdl6yriyy"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; }; + RPA = derive2 { name="RPA"; version="1.52.0"; sha256="0kwipm60h3g02xm0v8x8c18az4zqm2fqsn9m3n2wvy59lyzgd4cp"; depends=[affy BiocGenerics BiocStyle phyloseq rmarkdown]; }; + RProtoBufLib = derive2 { name="RProtoBufLib"; version="2.8.0"; sha256="1mvqwrm1y0vij66gdwgpf5l1h660wsi9jzjfs4ihw3zm4cb0q5pp"; depends=[]; }; + RRHO = derive2 { name="RRHO"; version="1.36.0"; sha256="1ryfalc6h465w5zv03jq8cgbslvzk70l83bfj5cy2fcxsjgzi1z9"; depends=[VennDiagram]; }; + RSVSim = derive2 { name="RSVSim"; version="1.36.0"; sha256="1x72ksb9r7850xpmi5qhw6fnmz6p831mdf1s9s9bgn67kz7940d5"; depends=[Biostrings GenomicRanges IRanges ShortRead]; }; + RSeqAn = derive2 { name="RSeqAn"; version="1.16.0"; sha256="0i16z4vqp7mqjjkn8xzzxadh88r3ikl04h7jkjnn777cn4596svm"; depends=[Rcpp]; }; + RTCA = derive2 { name="RTCA"; version="1.48.0"; sha256="06bcy13i6j2y4fxizhg9k6yv2grvb2fi4w98f3q4pf8b6w6hcczb"; depends=[Biobase gtools RColorBrewer]; }; + RTCGA = derive2 { name="RTCGA"; version="1.26.0"; sha256="1r8ivxgqi9c33rzg0bx699grgzpikiqhbdznnck1daj66ab78shs"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; }; + RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.26.0"; sha256="19af2phrnlw86sqffhxzk43da1hxi6qm3xx0w0yhmx69fncqnml0"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges httr limma RaggedExperiment RCircos RCurl RJSONIO S4Vectors stringr SummarizedExperiment survival TCGAutils XML]; }; + RTN = derive2 { name="RTN"; version="2.20.0"; sha256="06gxc3qpvkd488m4wsy0xqwgdpfakas934k3pqs8knq5ivc5hy2a"; depends=[car data_table igraph IRanges limma minet mixtools pheatmap pwr RedeR S4Vectors snow SummarizedExperiment viper]; }; + RTNduals = derive2 { name="RTNduals"; version="1.20.0"; sha256="0lglzmd4hsc4nlf6j7c5ixgkvs5dxgb1jmr3b5080flcn24s5a3p"; depends=[RTN]; }; + RTNsurvival = derive2 { name="RTNsurvival"; version="1.20.0"; sha256="1vw185sskn59b647gfk1hqdmbm4kkb856wmv8dqlnw88mj5pls14"; depends=[data_table dunn_test egg ggplot2 pheatmap RColorBrewer RTN RTNduals scales survival]; }; + RTopper = derive2 { name="RTopper"; version="1.42.0"; sha256="01rn7ak7h7q9clwkbgal8n9ivb27ppzqq9s3sxp44s3dz6x07835"; depends=[Biobase limma multtest]; }; + RUVSeq = derive2 { name="RUVSeq"; version="1.30.0"; sha256="001h07b074hvj16bjdp9llb9psphw7r6kpwhq61bj4519y6lpg7x"; depends=[Biobase EDASeq edgeR MASS]; }; + RUVcorr = derive2 { name="RUVcorr"; version="1.28.0"; sha256="1fwmghmzyjfbifb4mchp64v3n9fwzdc0bzlcvb96q6d1vwb9vs9k"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; }; + RUVnormalize = derive2 { name="RUVnormalize"; version="1.30.0"; sha256="02jphy9y90jcl1i2pmsai188whb7ivb4zq0l2whzsz8hyanqgbwv"; depends=[Biobase RUVnormalizeData]; }; + RVS = derive2 { name="RVS"; version="1.18.0"; sha256="0yzzbj31gb86gvcchs6bbi69hbd39f2y4d3zv1g4lmyhbxzqw6zb"; depends=[GENLIB gRain kinship2 snpStats]; }; + RadioGx = derive2 { name="RadioGx"; version="2.0.0"; sha256="0biajaa10skv55r7g8gfa1gkz9cav1g9rr9bj6zfqdcyg4i9a9hi"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader magicaxis matrixStats RColorBrewer reshape2 S4Vectors scales SummarizedExperiment]; }; + RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.20.0"; sha256="04vq9g7c7j15dpfcgs9v2ml32sw42bwa312p8lzs4jq6xkc6h52f"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors SummarizedExperiment]; }; + RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.16.0"; sha256="1cy4c1gw7gmz15hvl2bx6r4r1hjslymw74gmqir068qgbnn9jz86"; depends=[dnet igraph Matrix]; }; + RankProd = derive2 { name="RankProd"; version="3.22.0"; sha256="0rq14h9kjj84krgvfa09jbc5s8yks37fjbcv8z88daaib0j3fq2d"; depends=[gmp Rmpfr]; }; + RareVariantVis = derive2 { name="RareVariantVis"; version="2.24.0"; sha256="0m6r8ldilv8hl3qhvbxafv928f7xma7w1rj7nv0hzi21hg741kp1"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + RbcBook1 = derive2 { name="RbcBook1"; version="1.64.0"; sha256="1ivk4hjx1jzjg46cwwjmk7anqxwa9ddr34zf0xgbyfrbg25ilf44"; depends=[Biobase graph rpart]; }; + Rbec = derive2 { name="Rbec"; version="1.4.0"; sha256="0870yy8j77yw67y3ihyb10w8a6py33h4p27bgikqq2b9830f5cpw"; depends=[dada2 doParallel foreach ggplot2 Rcpp readr]; }; + Rbowtie = derive2 { name="Rbowtie"; version="1.36.0"; sha256="1ya1irwshsyy9l1fj51b04nv1ahq7a47ck7q19h2cly6yskc4x1q"; depends=[]; }; + Rbowtie2 = derive2 { name="Rbowtie2"; version="2.2.0"; sha256="0dhdx27vrkhd4fak0qb5q9amlcpi97xhf3ry39zk0ifx5zpjynkg"; depends=[magrittr Rsamtools]; }; + Rbwa = derive2 { name="Rbwa"; version="1.0.0"; sha256="1rf43p87p5397cbh9znl0qvrplid102qd3bgf310kk3kpkjdw56q"; depends=[]; }; + Rcade = derive2 { name="Rcade"; version="1.37.0"; sha256="1x8a4kas3bd4dzlwwiw781l9j2xa4sqmwbzblmsc23cp7kfbvffg"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; }; + RcisTarget = derive2 { name="RcisTarget"; version="1.16.0"; sha256="17fnjkg6rjqj33v7slg81skqag10y6dc14g5iv69gqshjal4w4im"; depends=[arrow AUCell BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges GSEABase R_utils S4Vectors SummarizedExperiment tibble]; }; + Rcpi = derive2 { name="Rcpi"; version="1.32.0"; sha256="15igxc8ki7gy3ca01r85zqi1j4j31hdhwhcmdbnkv9z6f3r8i38m"; depends=[Biostrings doParallel foreach GOSemSim rcdk RCurl rjson]; }; + Rcwl = derive2 { name="Rcwl"; version="1.12.0"; sha256="1q10gzh3m46jaac1w5hhfv166vrh23q3fwn377cy0p0cq6mhqk9j"; depends=[basilisk batchtools BiocParallel codetools DiagrammeR R_utils S4Vectors shiny yaml]; }; + RcwlPipelines = derive2 { name="RcwlPipelines"; version="1.12.0"; sha256="1lcx926y437jkphldnydw71k64mibgh5k0cwxzsf8f9b0lwmhl02"; depends=[BiocFileCache git2r httr rappdirs Rcwl S4Vectors]; }; + Rdisop = derive2 { name="Rdisop"; version="1.56.0"; sha256="0cy1m1mch6d7csvlaacb5c54nz3f4caddjyfwbxq74qbzgx8mq07"; depends=[Rcpp]; }; + ReQON = derive2 { name="ReQON"; version="1.42.0"; sha256="1f5pplm8fy3wvl0b6n18gph4dq9i9x5qiyjrj0bk0kwlkbpba74r"; depends=[rJava Rsamtools seqbias]; }; + ReactomeContentService4R = derive2 { name="ReactomeContentService4R"; version="1.4.0"; sha256="1v4r1jybffjjz45ya2a8vx81i5fm911vqrba5qc846c5mikwxifp"; depends=[data_table doParallel foreach httr jsonlite magick]; }; + ReactomeGSA = derive2 { name="ReactomeGSA"; version="1.10.0"; sha256="1al69vrxsc3yw7d7vi8zvx6s5cac9dm0dzhkd96gqixjfr8lbsiq"; depends=[dplyr ggplot2 gplots httr jsonlite progress RColorBrewer tidyr]; }; + ReactomeGraph4R = derive2 { name="ReactomeGraph4R"; version="1.4.0"; sha256="07psjmygwvjkrz4dsgsa6hbw15dn97lkl5h1hk386yj94d5aplbk"; depends=[data_table doParallel foreach getPass jsonlite magrittr neo4r purrr ReactomeContentService4R rlang]; }; + ReactomePA = derive2 { name="ReactomePA"; version="1.40.0"; sha256="1fd72m2afxbbvbgwy8knp6fiq1h561plmsh4r8a08w21ngmkz2s5"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite igraph reactome_db]; }; + ReadqPCR = derive2 { name="ReadqPCR"; version="1.42.0"; sha256="1999bn50w4sm8lr8ly6n773kswffcyrj3l6if37z1c17krfp58vl"; depends=[Biobase]; }; + RedeR = derive2 { name="RedeR"; version="2.0.0"; sha256="1ai4cq48i3bpgkla2bf2fyrms5y15bmkf2c5qnjlh0lq274d160l"; depends=[igraph]; }; + RefPlus = derive2 { name="RefPlus"; version="1.66.0"; sha256="0q0jklcbf7przhaxdb4w2qalin7ypds8s6v1yjlriqj62zkvd9bk"; depends=[affy affyPLM Biobase preprocessCore]; }; + RegEnrich = derive2 { name="RegEnrich"; version="1.6.0"; sha256="0nfdnbw69dl6zba3mrvjb1v4h8avgn30kzpfwl5fi5n07x6s7xpb"; depends=[BiocParallel BiocSet DESeq2 DOSE dplyr fgsea ggplot2 limma magrittr randomForest reshape2 S4Vectors SummarizedExperiment tibble WGCNA]; }; + RepViz = derive2 { name="RepViz"; version="1.12.0"; sha256="1y60br7rk1834izrsi74cnmw90klxdxgbwhlxcqsmvr3r1nblgwq"; depends=[biomaRt GenomicRanges IRanges Rsamtools S4Vectors]; }; + Repitools = derive2 { name="Repitools"; version="1.42.0"; sha256="1jasydq3wai7zxkgjph7fgy77i65qrsf520chaq474xf1j9hr9j8"; depends=[BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; }; + ReportingTools = derive2 { name="ReportingTools"; version="2.36.0"; sha256="0r8cdqzfh1jxkghhk3j8x3y9kkmdyg9ibfhsic15jqkmp1im6khh"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; }; + ResidualMatrix = derive2 { name="ResidualMatrix"; version="1.6.0"; sha256="1pjr3gva0jwj2pgqr4k4nl1ir1153hhrk1d400r30w0di472hns4"; depends=[DelayedArray Matrix S4Vectors]; }; + Rfastp = derive2 { name="Rfastp"; version="1.6.0"; sha256="06zzmdym2x72a99853qvh1a4snbmgysnmi6yckakdg6isizxm14p"; depends=[ggplot2 Rcpp reshape2 Rhtslib rjson zlibbioc]; }; + Rgin = derive2 { name="Rgin"; version="1.15.0"; sha256="1x5zj2d5rvsr2xh0ifpnrys9v91dal1xxhv5mmk16rs8wzwqpqba"; depends=[RcppEigen]; }; + Rgraphviz = derive2 { name="Rgraphviz"; version="2.40.0"; sha256="1r6ff7w2bmyfl1vzjvpgnhb8f5arwjlpab8fw5ph8fgyiqbcx94l"; depends=[graph]; }; + Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.18.0"; sha256="0q49plxjw1akrglvh2iqiq4gx30ph1sfa5zqy2s7vxm2d73cylyj"; depends=[]; }; + Rhisat2 = derive2 { name="Rhisat2"; version="1.12.0"; sha256="0hzair41l47kzykymd169a34pfhb98vrjgkgdf15m17csyz7pnv7"; depends=[GenomicFeatures GenomicRanges SGSeq]; }; + Rhtslib = derive2 { name="Rhtslib"; version="1.28.0"; sha256="07kws6afkxbmxq4w357mwwl712pdd16alvz7iqijjd2x7rjchj2f"; depends=[zlibbioc]; }; + RiboCrypt = derive2 { name="RiboCrypt"; version="1.2.0"; sha256="071y96ilsb9l5jfdsyhjpm69aqz8v8hjis2izvqwvds4ia2j1mhh"; depends=[BiocGenerics BiocParallel Biostrings data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges ORFik plotly rlang]; }; + RiboDiPA = derive2 { name="RiboDiPA"; version="1.4.0"; sha256="07aianasqm3mlrj3y4llrcsqrlslm72ywrf8196syq533f91criq"; depends=[BiocFileCache BiocGenerics data_table DESeq2 doParallel elitism foreach GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges matrixStats qvalue Rcpp reldist Rsamtools S4Vectors]; }; + RiboProfiling = derive2 { name="RiboProfiling"; version="1.26.0"; sha256="08m4rc530bkzcc43iwzg2fw9cjlf4wc2d8akv5vblsb42xdn8sqp"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; }; + Ringo = derive2 { name="Ringo"; version="1.60.0"; sha256="1znmxzp1g1jim5za2gi7mk0r2ac4q3wd609xncvq23s0jww0nzpc"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; + Risa = derive2 { name="Risa"; version="1.38.0"; sha256="0l3k04s0wh82bfhy561m2j7zj2ckx1rdgvlbdnbkx3qr6d905cj9"; depends=[affy Biobase biocViews Rcpp xcms]; }; + Rmagpie = derive2 { name="Rmagpie"; version="1.52.0"; sha256="1i9cs3jxg9izskq2n2f4n5k9dkivnm64knmzgmdl9xhsqdabih2v"; depends=[Biobase e1071 kernlab pamr]; }; + Rmmquant = derive2 { name="Rmmquant"; version="1.14.0"; sha256="1s2sb2f4kc20anmhcrgy988yam1iyk383ia7mci0gb32dsblrpfk"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + RnBeads = derive2 { name="RnBeads"; version="2.14.0"; sha256="1r5njn90893j3p0sz335w8xq0fkf6q7ai2w23qacnm2zfhh6k345"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; + RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.6.0"; sha256="1v5bjdwzv0kram0q0cyghjn8cc2zd58qbbz6s8xa12avl0cbnxhn"; depends=[biomaRt dplyr edgeR ggplot2 ggpubr heatmap3 KEGGREST matlab Rcpp recount RnaSeqSampleSizeData SummarizedExperiment tidyr tidyselect]; }; + Rnits = derive2 { name="Rnits"; version="1.29.0"; sha256="0m6afic9p7synmngkn7zyf53saqnrmgydjbk41k0w814i46dcd6h"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; + RolDE = derive2 { name="RolDE"; version="1.0.0"; sha256="0jynxvwrz8f40sj2iha3g25znv4z097hm3snhzm36bs0h7nvv8sq"; depends=[doParallel doRNG foreach matrixStats nlme qvalue rngtools ROTS SummarizedExperiment]; }; + RpsiXML = derive2 { name="RpsiXML"; version="2.38.0"; sha256="0x4nph4xss4piq4fgijjjj33yrqqfdbsgn9wvqy17nglvz5gi7bi"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; + Rqc = derive2 { name="Rqc"; version="1.30.0"; sha256="11j8m69zdcmpjb3xzr4s8sqmv8aqgl8q7k81gnd09l3nyjzy0h1k"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; + Rsamtools = derive2 { name="Rsamtools"; version="2.12.0"; sha256="1wll703if12qrn0d11ljwf7rqhs4lb27fzyyz1hqwvzn3v361s10"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges Rhtslib S4Vectors XVector zlibbioc]; }; + Rsubread = derive2 { name="Rsubread"; version="2.10.0"; sha256="1fd83w8yzajd7ybkjyk68njkg39sq9a4bcgdnfj0lg6n33gbnv7w"; depends=[Matrix]; }; + Rtpca = derive2 { name="Rtpca"; version="1.6.0"; sha256="1cv0yj3j2cndyb0827raw3x7gi3li0nj2q0s71apj2bvl74y2h27"; depends=[Biobase dplyr fdrtool ggplot2 pROC tibble tidyr]; }; + Rtreemix = derive2 { name="Rtreemix"; version="1.58.0"; sha256="0n9pmmn0mzj6zi303zzkmcww8f23xydgvw6bz5cx7sswlqvsixvm"; depends=[Biobase graph Hmisc]; }; + S4Vectors = derive2 { name="S4Vectors"; version="0.34.0"; sha256="0j3ybhzdhlhw8527nks3mjja28asjya2n0m0rjkh4bw66rkfys4k"; depends=[BiocGenerics]; }; + SAIGEgds = derive2 { name="SAIGEgds"; version="1.10.0"; sha256="0qvwyaiqkgdi9aqhx7w3cv1rrap5c6zcnprac6lixp5ib9a5nc7i"; depends=[gdsfmt Rcpp RcppArmadillo RcppParallel SeqArray SPAtest]; }; + SANTA = derive2 { name="SANTA"; version="2.32.0"; sha256="0d501mb84a95n3r8zirrhkm6l7kl47rfkzcrag3cpmd2zl0nppq0"; depends=[igraph Matrix]; }; + SBGNview = derive2 { name="SBGNview"; version="1.10.0"; sha256="0d4phx2bc77cvvy7lkn2mvkwwy5mld73rpis8q88c85sda07yakl"; depends=[AnnotationDbi bookdown httr igraph KEGGREST knitr pathview Rdpack rmarkdown rsvg SBGNview_data SummarizedExperiment xml2]; }; + SBMLR = derive2 { name="SBMLR"; version="1.92.0"; sha256="05qs42b8ssxqlapcy9cn99hkgr3yak0bb97zbc548wp1yfhwmdqb"; depends=[deSolve XML]; }; + SC3 = derive2 { name="SC3"; version="1.24.0"; sha256="179x0x9zr5ffqhr33va3x7ph5r1mzhy1j9xdmmf8qga0jw80alz2"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; }; + SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.38.0"; sha256="0riz6fmq9rsdkpfwyzva15xrfhdpab42yn2zklv6663pwha64wjj"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; }; + SCANVIS = derive2 { name="SCANVIS"; version="1.10.0"; sha256="136kzmgpyn3jxnsc60x6x93zb5c65ji5221z89178yfvr7h48v17"; depends=[IRanges plotrix RCurl rtracklayer]; }; + SCATE = derive2 { name="SCATE"; version="1.6.0"; sha256="14zm5y3m03wxjd8fbl0hn5fvmyv5hlwcfh38hzzv68jfmhyyasfh"; depends=[GenomicAlignments GenomicRanges mclust preprocessCore Rtsne SCATEData splines2 xgboost]; }; + SCArray = derive2 { name="SCArray"; version="1.4.0"; sha256="1yd251b5wdgjg9g2xjj0b4h5bbfj9mhpsll5kzq5cmw31qz6q6b9"; depends=[BiocGenerics DelayedArray DelayedMatrixStats gdsfmt IRanges S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SCBN = derive2 { name="SCBN"; version="1.14.0"; sha256="1hg2rwaag0vnh8wq2lwi62qjk13apdwhhbxnp93sry4h7gvkpxaa"; depends=[]; }; + SCFA = derive2 { name="SCFA"; version="1.6.0"; sha256="0kqwjhrjqj8q9zijajyyw7yy9dbzacard8imgc0p3p9iyssa9g9n"; depends=[BiocParallel cluster clusterCrit glmnet igraph keras Matrix matrixStats psych RhpcBLASctl survival tensorflow]; }; + SCOPE = derive2 { name="SCOPE"; version="1.8.0"; sha256="1vif96msq93j0rmz5ak898wbjbw6l649n0jhbd5jqjyg9h47rm8s"; depends=[BiocGenerics Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DescTools DNAcopy doParallel foreach GenomeInfoDb GenomicRanges gplots IRanges RColorBrewer Rsamtools S4Vectors]; }; + SCnorm = derive2 { name="SCnorm"; version="1.18.0"; sha256="0bd1y7nakacc1hl6dn8g47wx1z132qpi459626szc2ahmi62bq5d"; depends=[BiocGenerics BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SDAMS = derive2 { name="SDAMS"; version="1.16.0"; sha256="1gqyzd3dmb3ba9ymjk4x9kbj10cx7iggbp3iv2a3nl2il7h3kkq1"; depends=[qvalue SummarizedExperiment trust]; }; + SELEX = derive2 { name="SELEX"; version="1.28.0"; sha256="0kf81k9r5rsihx7w5rh0hb7b6pwmn0qxikwy443q6j30m2b26rbw"; depends=[Biostrings rJava]; }; + SEPIRA = derive2 { name="SEPIRA"; version="1.16.0"; sha256="0dz7d0vvzg9ak2gs2pgciqabpjgqwhs236gfa48m71cy13khsdpz"; depends=[corpcor limma]; }; + SEtools = derive2 { name="SEtools"; version="1.10.0"; sha256="0s382ph3v3ynx5j90rzsh6ix9h8776m7dmn0pr8shc9gy5ixv54z"; depends=[BiocParallel data_table DESeq2 edgeR Matrix openxlsx S4Vectors sechm SummarizedExperiment sva]; }; + SGSeq = derive2 { name="SGSeq"; version="1.30.0"; sha256="0hz45367i70wl97silnimicdvs3g41zyf8syc6igz6471wbwkxwp"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; }; + SIAMCAT = derive2 { name="SIAMCAT"; version="2.0.0"; sha256="10bgschq9lihylbhmyr89rplxs5rxa84qhv93ms807syx6kk733f"; depends=[beanplot corrplot glmnet gridBase gridExtra infotheo lgr LiblineaR lmerTest matrixStats mlr3 mlr3learners mlr3tuning paradox phyloseq pROC progress PRROC RColorBrewer scales stringr]; }; + SICtools = derive2 { name="SICtools"; version="1.26.0"; sha256="1vj5y3xysvf113f2iy2n10yzm3xy30m7g3brirydrj9vk73ssdcs"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; }; + SIM = derive2 { name="SIM"; version="1.66.0"; sha256="0kvayxf4h7l9410v0gafbg31xkc8xcl1cbilfgln4l5pv42wnrl4"; depends=[globaltest quantreg quantsmooth]; }; + SIMAT = derive2 { name="SIMAT"; version="1.28.0"; sha256="06f4py4gk2gqdas1gwz43by1m4k5b617l58a36rm294w9hvwi03b"; depends=[ggplot2 mzR Rcpp reshape2]; }; + SIMD = derive2 { name="SIMD"; version="1.14.0"; sha256="1sbqfrawrh2yndzwl0c0dlpsj5zy264r725r4awzzawnxac3c0k7"; depends=[edgeR methylMnM statmod]; }; + SIMLR = derive2 { name="SIMLR"; version="1.22.0"; sha256="1y26296n42w18ra9c35qfqlxgxk16hz051139g82ki9aydh6b0mm"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; + SISPA = derive2 { name="SISPA"; version="1.26.0"; sha256="17zljr5vr9zh5cwah6dya3nyzv1266wlfm558r8j1zccirahjvf7"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; + SLqPCR = derive2 { name="SLqPCR"; version="1.62.0"; sha256="1336jfm13yhn1anzl7kjgqhvvk6gy8h0ikzi9iqrrm0sxhjyyb74"; depends=[]; }; + SMAD = derive2 { name="SMAD"; version="1.12.0"; sha256="1qwdwslb5sx07sgjafv7yd69isbn7sf60yisfry64bkc3h8rrmmb"; depends=[dplyr magrittr Rcpp RcppAlgos tidyr]; }; + SMAP = derive2 { name="SMAP"; version="1.60.0"; sha256="11c0br8kv93bzdn4y4xrkl6pkqdpn4zzyx31dqkq5bz4vvjfmz47"; depends=[]; }; + SMITE = derive2 { name="SMITE"; version="1.24.0"; sha256="0klqxzaypidfzgcxfa1lnrlsv08zkqwf5y82ldac7bpnnyr91z1b"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGGREST org_Hs_eg_db plyr reactome_db S4Vectors scales]; }; + SNAGEE = derive2 { name="SNAGEE"; version="1.36.0"; sha256="0zjn0qjyhpnfzabgi5rv1zhblfwz4rdldp7pa18zkayflhfhql5i"; depends=[SNAGEEdata]; }; + SNPRelate = derive2 { name="SNPRelate"; version="1.30.0"; sha256="1jbmicz4xnf6v3cb328x0z1rwd3zcm2l72lgih0hx306wd3g0i29"; depends=[gdsfmt]; }; + SNPediaR = derive2 { name="SNPediaR"; version="1.22.0"; sha256="1qg1arrf9pv59hzmncmfhw9w2npk6mm068c6ghx527vja7g3lcxd"; depends=[jsonlite RCurl]; }; + SNPhood = derive2 { name="SNPhood"; version="1.26.0"; sha256="186qcscxgpjxc3c875yvnc75xv4dmmjpy7ci2glabw9sy5p2vz2a"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + SOMNiBUS = derive2 { name="SOMNiBUS"; version="1.4.0"; sha256="0xjrn2anfsw6d48lb2kp1zxj2d4cn6gr6wb6cfllwxiwdq635lyc"; depends=[Matrix mgcv VGAM]; }; + SPEM = derive2 { name="SPEM"; version="1.36.0"; sha256="1nnyx7jaqz2cj7zmm4dfv5n9m4willwv411q0wiqsjbgm60j37ak"; depends=[Biobase Rsolnp]; }; + SPIA = derive2 { name="SPIA"; version="2.48.0"; sha256="1s6mx463xgy8hdifksb824brmrr07k38yksdrbk38v0zniyns97w"; depends=[KEGGgraph]; }; + SPLINTER = derive2 { name="SPLINTER"; version="1.22.0"; sha256="1kvin1kma85p4q3jasm0q631dalndq021r4wx4vls34mhglhrrzx"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; }; + SPONGE = derive2 { name="SPONGE"; version="1.18.1"; sha256="071w946cdvc8x277893ji74l336j99j73k3cxawi64k39c1qqsnd"; depends=[Biobase biomaRt caret ComplexHeatmap cvms data_table doRNG dplyr expm foreach ggplot2 ggpubr ggridges glmnet gRbase igraph iterators logging MASS MetBrewer miRBaseConverter ppcor randomForest rlang stringr tidyr tidyverse tnet]; }; + SPOTlight = derive2 { name="SPOTlight"; version="1.0.0"; sha256="1h6w02ya3fcg13rb0phzfx6qdw4mhbgsq6jai1h2jab8whcggfpn"; depends=[ggplot2 Matrix matrixStats NMF nnls SingleCellExperiment]; }; + SPsimSeq = derive2 { name="SPsimSeq"; version="1.6.0"; sha256="11symjnpyp6yb26071gnzgp3immhjyyzirwb6j7gnh8hmgzmcpz9"; depends=[edgeR fitdistrplus Hmisc limma mvtnorm phyloseq SingleCellExperiment WGCNA]; }; + SQLDataFrame = derive2 { name="SQLDataFrame"; version="1.10.0"; sha256="0pkpjmhff9jlsnj1xs05j066lks4qmkzh09xlnc34wvgx7qrg20n"; depends=[BiocGenerics DBI dbplyr dplyr lazyeval RSQLite S4Vectors tibble]; }; + SQUADD = derive2 { name="SQUADD"; version="1.46.0"; sha256="13g381j3xbzdh6xwmgf3d1jsr39zd523q1kldpw3cmp01asykcwm"; depends=[RColorBrewer]; }; + SRAdb = derive2 { name="SRAdb"; version="1.58.0"; sha256="1r21llikjjicbqsrcp3yaqsp45nbzbrccsn4gpgdk90gx7p325by"; depends=[GEOquery graph RCurl RSQLite]; }; + STAN = derive2 { name="STAN"; version="2.24.0"; sha256="18qa8fa6n9n965h0rwbsyfd14snh2n96rwfi1l1dg7wdrksyr8wx"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; }; + STATegRa = derive2 { name="STATegRa"; version="1.32.0"; sha256="157jm77mh12p5wdik1xm00p8r7x692gw5sb2dphkjf6fkc53sxk0"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; }; + STRINGdb = derive2 { name="STRINGdb"; version="2.8.0"; sha256="194grs69q20irpqmck7fb9alp9764hy3is132yzpfsicj72vpbyw"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; }; + STROMA4 = derive2 { name="STROMA4"; version="1.20.0"; sha256="14qz7napk9kmga7gvhp34zh0kdkwzqx57q79famz1lyanzvibcij"; depends=[Biobase BiocParallel cluster matrixStats]; }; + STdeconvolve = derive2 { name="STdeconvolve"; version="1.0.0"; sha256="092gsmnp70wqpw21yxicpm29qwp27zxz60d026i6mfszhd48abxx"; depends=[BiocParallel clue ggplot2 liger Matrix mgcv reshape2 scatterpie slam topicmodels viridis]; }; + SWATH2stats = derive2 { name="SWATH2stats"; version="1.26.0"; sha256="0n6ap58lbn3rbaqb50244byam2fc62q85zl2a5bws5bsfccnvzk3"; depends=[biomaRt data_table ggplot2 reshape2]; }; + SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.50.0"; sha256="0p4a9f4aa714jn1z4r9177jqin11qi3ln3pdjb0vblcj435yhpdm"; depends=[]; }; + Scale4C = derive2 { name="Scale4C"; version="1.18.0"; sha256="0n63sp8jalm8il1vyl1ls9cbbzs3jb227kq6rdw436mmnk5d7hik"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; + ScaledMatrix = derive2 { name="ScaledMatrix"; version="1.4.0"; sha256="0p6065mbn77hphpjfchz3r3raspl127f11n39mwh9bih4zg375cl"; depends=[DelayedArray Matrix S4Vectors]; }; + Sconify = derive2 { name="Sconify"; version="1.16.0"; sha256="0nm6z5dmnqd1bw1xpw7ljjlrbccqjmpcb1ds83yjy5wc9i0m2jdb"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; + SemDist = derive2 { name="SemDist"; version="1.30.0"; sha256="01pjcxhbyhbdcfw8jrjq04n4xi659ah3mx176rf0x7dll732y161"; depends=[annotate AnnotationDbi GO_db]; }; + SeqArray = derive2 { name="SeqArray"; version="1.36.0"; sha256="136mywmch496ski3r3svpfpm6dmr3va70s6psf1796x3zs6zs0ry"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + SeqGSEA = derive2 { name="SeqGSEA"; version="1.36.0"; sha256="0jpj0hksbbgzfr0k5f4zwm2ivdwrm00mcz8n8q0m35k44bj311b0"; depends=[Biobase biomaRt DESeq2 doParallel]; }; + SeqGate = derive2 { name="SeqGate"; version="1.6.0"; sha256="0fa5spf66d1x0747ikgk822mpcjbvb0y4slmq636njxgi6n739wk"; depends=[BiocManager GenomicRanges S4Vectors SummarizedExperiment]; }; + SeqSQC = derive2 { name="SeqSQC"; version="1.18.0"; sha256="1687klbjypwhd6qg7s965s7n47wf0kyfsn734wg27zv6mvfhck9r"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; }; + SeqVarTools = derive2 { name="SeqVarTools"; version="1.34.0"; sha256="1giabkg0q9fyqqm1fqw05h6dhvs58w3x1d8jp7xddh5dqisk4b3a"; depends=[Biobase BiocGenerics data_table gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray]; }; + SharedObject = derive2 { name="SharedObject"; version="1.10.0"; sha256="0z33jp0vlx2d9wn8zi28hd5ilzp1rql5zvylx1vm71bfsjpy7nlc"; depends=[BH BiocGenerics Rcpp]; }; + ShortRead = derive2 { name="ShortRead"; version="1.54.0"; sha256="0303198b4v2wjah9kc829kn01030996l6di4jpf8q5ccd212rjhq"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rhtslib Rsamtools S4Vectors XVector zlibbioc]; }; + SigCheck = derive2 { name="SigCheck"; version="2.28.0"; sha256="0xagj5zfm25d8ld497pvbx23pwbds1pkg68zlk908zwhy7g26512"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; }; + SigFuge = derive2 { name="SigFuge"; version="1.34.0"; sha256="1kqpkl6b742z9jldnxkji7ng4w9yaj76s86njkw94qyzrvkn6xcg"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; }; + SigsPack = derive2 { name="SigsPack"; version="1.10.0"; sha256="1c3xnk90gy60jzjgydg0vr1xmlcad4dkk45skyh42abzqxlwj5yd"; depends=[Biobase Biostrings BSgenome GenomeInfoDb GenomicRanges quadprog rtracklayer SummarizedExperiment VariantAnnotation]; }; + SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.34.0"; sha256="1ndim53fhx0naj1r5zwq4d655nbdvclfi40m3fqg891hzz370sd6"; depends=[Biobase limma mclust Ringo]; }; + SimFFPE = derive2 { name="SimFFPE"; version="1.8.0"; sha256="0i2ah49bajhjf0yjjhm84vpc8brs8y3c016l4sbwhpb2nhcqgvgj"; depends=[Biostrings doParallel dplyr foreach GenomicRanges IRanges Rsamtools truncnorm]; }; + SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.18.0"; sha256="0s1aqbvlfnzijzfywjfpinqmxqj269dq2d3zlgf4xw9c1nwwnv7p"; depends=[BiocGenerics DelayedArray GenomicRanges S4Vectors SummarizedExperiment]; }; + SingleCellSignalR = derive2 { name="SingleCellSignalR"; version="1.8.0"; sha256="0c0fsr1b0mc5a7qfa7cjipx50fscb120747c9xjp5n55jv5hwd9c"; depends=[BiocManager circlize data_table edgeR foreach gplots igraph limma multtest pheatmap Rtsne scran SIMLR stringr]; }; + SingleMoleculeFootprinting = derive2 { name="SingleMoleculeFootprinting"; version="1.4.0"; sha256="0kayi1cahn57ysdhykk4h3a93ajnr41p7xbf1v04mvbz9gq9piqf"; depends=[BiocGenerics Biostrings BSgenome data_table GenomeInfoDb GenomicRanges IRanges plyr QuasR RColorBrewer]; }; + SingleR = derive2 { name="SingleR"; version="1.10.0"; sha256="0qbyc6ygw2xv3li9187i3axsw6ihwpa7pkvxvy9cagv7xck45c5y"; depends=[beachmat BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats Matrix Rcpp S4Vectors SummarizedExperiment]; }; + SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.32.0"; sha256="1ydnp54laznzpi08s403kxhnr5nqhvm3iilaxlcdlz0ngxhm6vx6"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; }; + SpacePAC = derive2 { name="SpacePAC"; version="1.34.0"; sha256="0i0bl55cbrhj9zvlvh3wbxgjaq5g1xvxdd6gpnj0barr5p8bx7x2"; depends=[iPAC]; }; + Spaniel = derive2 { name="Spaniel"; version="1.10.0"; sha256="19280ardr91mk0l60nxprq9405drwmnc4jlbrzx1lz6951k07zj0"; depends=[dplyr DropletUtils ggplot2 igraph jpeg jsonlite magrittr png S4Vectors scater scran Seurat shiny SingleCellExperiment SummarizedExperiment]; }; + SparseSignatures = derive2 { name="SparseSignatures"; version="2.6.0"; sha256="1ks4279slgyn2fnwmafgcmmhq69fx6jpvafjahpvnvh6jlf9dxy9"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls reshape2]; }; + SpatialCPie = derive2 { name="SpatialCPie"; version="1.12.0"; sha256="06axh7wnf19hs7y6skik2yff3xyd06y4x9jrx1996hjliyhdv88v"; depends=[colorspace data_table digest dplyr ggforce ggiraph ggplot2 ggrepel igraph lpSolve purrr readr rlang shiny shinycssloaders shinyjs shinyWidgets SummarizedExperiment tibble tidyr tidyselect zeallot]; }; + SpatialDecon = derive2 { name="SpatialDecon"; version="1.6.0"; sha256="12fyzsrgz76wndxk59p8aknxvj62g4b9k21hla4m2zj1cav46lhc"; depends=[Biobase GeomxTools Matrix repmis SeuratObject]; }; + SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.6.0"; sha256="0r4xvmd6kf2ksc1ma68118nfw8adi2ncf69r6dp5fw2hgfph9c6p"; depends=[BiocFileCache BiocGenerics DropletUtils magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; }; + SpeCond = derive2 { name="SpeCond"; version="1.50.0"; sha256="051p6npzjpwagd0bnzpbdjcmgkasr8d74a42ppmlc9hsfg8pzqcw"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; + Spectra = derive2 { name="Spectra"; version="1.6.0"; sha256="0kzz7par5zwk4qypicmz39d6bc4aqmflzzxfrpng2y3id7f15jks"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; }; + SpectralTAD = derive2 { name="SpectralTAD"; version="1.12.0"; sha256="0svv4mp6qk2k3clz8qdigzhawh4cglzwrb8frh5c6mgrgdbf53g5"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; }; + SpidermiR = derive2 { name="SpidermiR"; version="1.26.0"; sha256="0v1sdcwrhvnkr497i6qifzvzg2sr3ml5w2pwrp6nhlfhp1g0l4ah"; depends=[AnnotationDbi gdata ggplot2 gplots gridExtra httr igraph lattice latticeExtra MAGeCKFlute miRNAtap miRNAtap_db org_Hs_eg_db TCGAbiolinks]; }; + SplicingFactory = derive2 { name="SplicingFactory"; version="1.4.0"; sha256="11kkr4c2ilwbr2h80aqiphxihwzs4sr23hq3q6w22w3wqqp7w24k"; depends=[SummarizedExperiment]; }; + SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.36.0"; sha256="1c8m8ab5jrwa8fryrdww4r41svkv864l2pr1hy1kil3njyaam0ml"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; }; + StarBioTrek = derive2 { name="StarBioTrek"; version="1.22.0"; sha256="10wf96rn0d1srwkp980www7w5jjxzrq1li8d7n7069z3ja01p4ca"; depends=[AnnotationDbi e1071 ggplot2 graphite igraph MLmetrics reshape2 ROCR SpidermiR]; }; + Streamer = derive2 { name="Streamer"; version="1.42.0"; sha256="0v2cgi38blr8ydsnkyf50raqh7kcjzz0bpw27sl4ayprxbqg8nda"; depends=[BiocGenerics graph RBGL]; }; + Structstrings = derive2 { name="Structstrings"; version="1.12.0"; sha256="175g2wpsvmh8vj3pqv55mczhfzxip64rilynprywll9njk72ayb0"; depends=[BiocGenerics Biostrings crayon IRanges S4Vectors stringi stringr XVector]; }; + StructuralVariantAnnotation = derive2 { name="StructuralVariantAnnotation"; version="1.12.0"; sha256="0f3x74ic3blg8nm5xlv79k0n8j3fpl98mmhfanqfzmdl0g3j6wx6"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges rlang rtracklayer S4Vectors stringr SummarizedExperiment VariantAnnotation]; }; + SubCellBarCode = derive2 { name="SubCellBarCode"; version="1.12.0"; sha256="1gj49s99sfcnvpd04h9y4mil1x4d4s33jadljfpwwavhqnbqbp0w"; depends=[AnnotationDbi caret e1071 ggplot2 ggrepel gridExtra networkD3 org_Hs_eg_db Rtsne scatterplot3d]; }; + SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="2.14.0"; sha256="04w3mb5f3wj8n82fzhfvhaq986k1nfji8v4w7pnrbprizq6a5clf"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; }; + SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.26.1"; sha256="02vlqzmslyijs09jl0gdjxqjjnnl4yqbqqqlb4vb7nr0fspmyz39"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix MatrixGenerics S4Vectors]; }; + Summix = derive2 { name="Summix"; version="2.2.0"; sha256="08f7dr3ni2dkd55m7rgfc9s6xxn1na9xp9vpnmr3rcimp9w6lhwb"; depends=[nloptr]; }; + Sushi = derive2 { name="Sushi"; version="1.34.0"; sha256="0adswrbzd93rhy3q56ypwkrk6155vd4zxapvznswyjlxp8ha813q"; depends=[biomaRt zoo]; }; + SwathXtend = derive2 { name="SwathXtend"; version="2.18.0"; sha256="02lkh200pvzps2vp0i4fjm96zi1fy8x21kvd0sa599yks7vimzp4"; depends=[e1071 lattice openxlsx VennDiagram]; }; + SynExtend = derive2 { name="SynExtend"; version="1.8.0"; sha256="0z30izc2wnbbhv19xf5dnnls8j42v38771yv78im75li88zxl91m"; depends=[Biostrings DECIPHER IRanges S4Vectors]; }; + SynMut = derive2 { name="SynMut"; version="1.12.0"; sha256="1bm9z9za584x56qvpgqb5frhj02kfdy336q8ridlk1b83j2fmx23"; depends=[BiocGenerics Biostrings seqinr stringr]; }; + TADCompare = derive2 { name="TADCompare"; version="1.6.0"; sha256="0ramji5pn5w7ch83slflsw1wxhy451zw99rkhzb4slvgqi8v7bk8"; depends=[cluster cowplot dplyr ggplot2 ggpubr HiCcompare magrittr Matrix PRIMME RColorBrewer reshape2 tidyr]; }; + TAPseq = derive2 { name="TAPseq"; version="1.8.0"; sha256="0ls9l12fp04j2asr25cbz6xs38y3znhgcphfglbc13li3aa77gx0"; depends=[BiocGenerics BiocParallel Biostrings BSgenome dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges S4Vectors tidyr]; }; + TBSignatureProfiler = derive2 { name="TBSignatureProfiler"; version="1.8.0"; sha256="1npcdr3grm6qq4lqan6z9czkiwyz74pi741jwahzr0q93ah25kks"; depends=[ASSIGN BiocGenerics BiocParallel ComplexHeatmap DESeq2 DT edgeR gdata ggplot2 GSVA magrittr RColorBrewer reshape2 rlang ROCit S4Vectors singscore SummarizedExperiment]; }; + TCC = derive2 { name="TCC"; version="1.36.0"; sha256="077gj5f1iwb3xwy29p5q5fr3459nq9swybn7504dyxb93259qxzi"; depends=[baySeq DESeq2 edgeR ROC]; }; + TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.24.0"; sha256="19wf7bzspwanj0wfsqqmzh29iz6rc41rdr2xbzw8jlm2wspsqjbs"; depends=[biomaRt data_table downloader dplyr GenomicRanges ggplot2 httr IRanges jsonlite knitr plyr purrr R_utils readr rvest S4Vectors stringr SummarizedExperiment TCGAbiolinksGUI_data tibble tidyr XML xml2]; }; + TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.22.0"; sha256="1rav6nmbq8sn60x6cdc5zmvwwpiyfjc6n8hlzyjsg2yy3h3ij0qp"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel maftools pathview plotly readr sesame shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; }; + TCGAutils = derive2 { name="TCGAutils"; version="1.16.0"; sha256="0xh2z8055az6hnr2a3rsjlz9x7i4vz82dywk67xzmjf7954b1qhc"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; }; + TCseq = derive2 { name="TCseq"; version="1.20.0"; sha256="0wqkbvg41xbkfc0xs44ckpzagwyfmqrdr69fj7am51khzv7gznrk"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; }; + TDARACNE = derive2 { name="TDARACNE"; version="1.46.0"; sha256="1ryrnaaq15sgji2j4js5vgsr2j7dl4dd0shmz7qayyq0k7ai2yaq"; depends=[Biobase GenKern Rgraphviz]; }; + TEKRABber = derive2 { name="TEKRABber"; version="0.99.91"; sha256="0cmwcmk10piwh762w79z10grnnk4l87lnchqiwcxzscmrphcwijj"; depends=[apeglm biomaRt DESeq2 Rcpp SCBN SummarizedExperiment]; }; + TEQC = derive2 { name="TEQC"; version="4.18.0"; sha256="1n0ifh86z4635x8hk4yv8n1ay35725i7y0n8j2gdp7si5y3nsfnv"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; }; + TFARM = derive2 { name="TFARM"; version="1.18.0"; sha256="0rmw7r6k8mb5672aap26liqblrmasxvccxd4fjw2sdb449wbd9dl"; depends=[arules fields GenomicRanges gplots stringr]; }; + TFBSTools = derive2 { name="TFBSTools"; version="1.34.0"; sha256="0l6j1r2cx7jfd39qzbyynk4jvzd81ys6yypzxjc97js4kkyrx29w"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; }; + TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.16.0"; sha256="0ckc4azfd9li5qd07ylprmds8qyq78bf8blbqgrkrgig9jpzn92s"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils]; }; + TFHAZ = derive2 { name="TFHAZ"; version="1.18.0"; sha256="1c5nh7gvdr18dv52hddqcfvmnhpm4qk3bckag17r17a2capk9xij"; depends=[GenomicRanges IRanges S4Vectors]; }; + TFutils = derive2 { name="TFutils"; version="1.16.0"; sha256="1awzxj668ldh44fl0izvbm73cgm60rw93rfqfbhsflsx984rhzj9"; depends=[AnnotationDbi BiocFileCache dplyr DT GSEABase httr magrittr miniUI org_Hs_eg_db readxl rjson Rsamtools shiny]; }; + TIN = derive2 { name="TIN"; version="1.28.0"; sha256="1kgs45dif5fdmxlzhd6971mlhg0y1a41srnrx7irm4s4wckrpg4n"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; + TMixClust = derive2 { name="TMixClust"; version="1.18.0"; sha256="11ypr523hzbrynr1l68l7grn32499bl3j5wb7ic5i265r2kjcz4w"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; + TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.12.0"; sha256="12w43p3fpcn98h3p9brkc9fdsn0wn73bzyrz63gm43q1jw0zpizd"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; }; + TOAST = derive2 { name="TOAST"; version="1.10.0"; sha256="1m9zg2k0z22369ly48swccmgqwfw20rv2bm18d23zdafmkb7jklj"; depends=[corpcor doParallel EpiDISH GGally ggplot2 limma nnls quadprog SummarizedExperiment tidyr]; }; + TPP = derive2 { name="TPP"; version="3.24.0"; sha256="0w0gwhvc2mra0jd81pskhqsdayikz3fpbcx0sf45iac918dd2m4l"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; + TPP2D = derive2 { name="TPP2D"; version="1.12.0"; sha256="1567r1v92skhlvjysh5v32h6c50grm8qm7wbwdvr52pjqc7kvfb4"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; }; + TREG = derive2 { name="TREG"; version="1.0.0"; sha256="0hxk7b94cz2dmbkqf3798a4ycvbxs2cgl99vwcc75nw40fygwbf8"; depends=[Matrix purrr rafalib SummarizedExperiment]; }; + TRESS = derive2 { name="TRESS"; version="1.2.0"; sha256="17g37g8kbis42iv980002py225cxy0gvjfnjda760am387gb9hqm"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges Matrix matrixStats Rsamtools rtracklayer S4Vectors]; }; + TRONCO = derive2 { name="TRONCO"; version="2.28.0"; sha256="1ynf41bpc0v51sv6mig84n778kpfq0l9g50xff1bwz7zl1iab4al"; depends=[bnlearn circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; }; + TSCAN = derive2 { name="TSCAN"; version="1.34.0"; sha256="0a8f38jbb2lhqavqgbvm0d9xfy1cgjq4l7vs5h6kr45ij09wr6pm"; depends=[combinat DelayedArray fastICA ggplot2 gplots igraph Matrix mclust mgcv plyr S4Vectors shiny SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; + TTMap = derive2 { name="TTMap"; version="1.18.0"; sha256="01kj5snbf435d073xdh0pya2rmd1h3cxsagn0mqq5vvf46246258"; depends=[Biobase colorRamps rgl SummarizedExperiment]; }; + TVTB = derive2 { name="TVTB"; version="1.22.0"; sha256="006xyify2vy8jblzwi1hayn4yvvqpyz9is2z1z0lrcy7krhdmx8s"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; }; + TarSeqQC = derive2 { name="TarSeqQC"; version="1.25.1"; sha256="0g6zpbyn7ysvlply9sqbw3pw504nk5g342vv5n59czrr9nyymics"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; }; + TargetDecoy = derive2 { name="TargetDecoy"; version="1.2.0"; sha256="15z2nzaikgbp0y56v0cifbk2w1c1akgqb5d5zgbcbpih0kawhfjd"; depends=[ggplot2 ggpubr mzID mzR]; }; + TargetScore = derive2 { name="TargetScore"; version="1.34.0"; sha256="1yrcjdv5g3nx8m95wf1nilrmi1sppii4i4da19sm5ys4idl60213"; depends=[Matrix pracma]; }; + TargetSearch = derive2 { name="TargetSearch"; version="1.52.0"; sha256="0pgj9h5sfwgx1rrlxd9zrvmbj0z26jxmhdx6f2khbgk7i2c1hxpd"; depends=[assertthat ncdf4]; }; + TileDBArray = derive2 { name="TileDBArray"; version="1.6.0"; sha256="0n600170qabrswjch922skfsbwr7hnyxzmg015bxm5kfmwhab9pd"; depends=[DelayedArray Rcpp S4Vectors tiledb]; }; + TimeSeriesExperiment = derive2 { name="TimeSeriesExperiment"; version="1.13.0"; sha256="0bdpxxr739qdg92qabfx122k9f43vw2hyxp4yxqlbp37vzgcdf2c"; depends=[DESeq2 dplyr dynamicTreeCut edgeR ggplot2 Hmisc limma magrittr proxy S4Vectors SummarizedExperiment tibble tidyr vegan viridis]; }; + TimiRGeN = derive2 { name="TimiRGeN"; version="1.6.0"; sha256="1x8s0k938vfdadf6b33ha7ffvd2sn16scxii0wlzzm9s4v65vsvy"; depends=[biomaRt clusterProfiler dplyr FreqProf ggdendro gghighlight ggplot2 gplots gtools igraph Mfuzz MultiAssayExperiment RCy3 readxl reshape2 rWikiPathways scales stringr tidyr]; }; + TissueEnrich = derive2 { name="TissueEnrich"; version="1.16.0"; sha256="1l8qza4dmacp2rgx0z9nmya6jhidymx14wnz0vza0bm9409kaw41"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; }; + TitanCNA = derive2 { name="TitanCNA"; version="1.34.0"; sha256="14mxskynm6rjh8c7nzkp06c7a3a5rlcj88s9c6brzgx7gm3k7j3x"; depends=[BiocGenerics data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges VariantAnnotation]; }; + TnT = derive2 { name="TnT"; version="1.18.0"; sha256="01c4lhy9k2wiy7m7685qy4bj5q9bys7xqxfy9x3kpcn7by3dix83"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; }; + ToxicoGx = derive2 { name="ToxicoGx"; version="2.0.0"; sha256="0d331md9cq2h44zq8wvj2167994i097drfgljhwj1nnfsx9agqn1"; depends=[assertthat Biobase BiocGenerics BiocParallel caTools CoreGx data_table downloader dplyr ggplot2 jsonlite limma magrittr reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; }; + TraRe = derive2 { name="TraRe"; version="1.4.0"; sha256="1vrafzf8qk6nnav1m4ym26n8f0nfbsxqnmymv9a7k8yfxry3jnn8"; depends=[BiocParallel dqrng ggplot2 glmnet gplots gtools hash igraph matrixStats pvclust R_utils SummarizedExperiment vbsr]; }; + TrajectoryGeometry = derive2 { name="TrajectoryGeometry"; version="1.4.0"; sha256="13dxsk2dq5bsf9bwq4618kr6wsbmvzqnqh8i8zqrx4i818wd571s"; depends=[ggplot2 pracma rgl]; }; + TrajectoryUtils = derive2 { name="TrajectoryUtils"; version="1.4.0"; sha256="07hcr3zplxlzlwc13wh9006m5kaqm57cm1b2x74bpp857f2q93dj"; depends=[igraph Matrix S4Vectors SingleCellExperiment SummarizedExperiment]; }; + TransView = derive2 { name="TransView"; version="1.40.0"; sha256="1k3fs0wxh2m2mp7i6hqnpgf60jikgjn7cdv2mmnz77ignp37xr4f"; depends=[BiocGenerics GenomicRanges gplots IRanges Rhtslib S4Vectors zlibbioc]; }; + Travel = derive2 { name="Travel"; version="1.4.0"; sha256="1k3wv2a38cfmyxci8pi8i6vqj0q3prqdh1hid2sa40slapk6h30z"; depends=[Rcpp]; }; + TreeAndLeaf = derive2 { name="TreeAndLeaf"; version="1.8.0"; sha256="0wxgwcf2g2siz3kv19an1qv45xap8cdi4gblc9kssg0pjbxyhqnh"; depends=[ape igraph RedeR]; }; + TreeSummarizedExperiment = derive2 { name="TreeSummarizedExperiment"; version="2.4.0"; sha256="0bqqnx89bcknlrpxm5n3wbmfw99gfrpaxi5n6fv4pmqyrd0rwcx7"; depends=[ape BiocGenerics BiocParallel Biostrings dplyr IRanges rlang S4Vectors SingleCellExperiment SummarizedExperiment treeio]; }; + Trendy = derive2 { name="Trendy"; version="1.18.0"; sha256="06rjim93kqrf7l2m16vgi567fi9cdblgbf9khnmmbg73kaa346zz"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; }; + TurboNorm = derive2 { name="TurboNorm"; version="1.44.0"; sha256="00rggbdsk7xprkry8bi17mf143kqgw63cb315d9dc1qrc9vyz568"; depends=[affy convert lattice limma marray]; }; + TypeInfo = derive2 { name="TypeInfo"; version="1.62.0"; sha256="17cj4yd6lpckidzh5f3jb3vbwyimlnmsb3v5as4f91h2vnymwpax"; depends=[]; }; + UCell = derive2 { name="UCell"; version="2.0.0"; sha256="0p7jv1rl9vs1ag8a4vnkdghzixa3dljixkrhacfi69qm6crjlg12"; depends=[BiocParallel data_table Matrix SingleCellExperiment SummarizedExperiment]; }; + UMI4Cats = derive2 { name="UMI4Cats"; version="1.6.0"; sha256="0216qwriwjm0m7rzq8qjrvhnmn0fyqsv13cx24is53wqkqbqnavm"; depends=[annotate BiocFileCache BiocGenerics Biostrings BSgenome cowplot DESeq2 dplyr fda GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magick magrittr org_Hs_eg_db R_utils rappdirs Rbowtie2 RColorBrewer regioneR reshape2 rlang Rsamtools S4Vectors scales ShortRead stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene zoo]; }; + UNDO = derive2 { name="UNDO"; version="1.38.0"; sha256="0fasad2y0cnrdlfarqxlmgn30hjfqksddnvq5yia3ps50wzj7xyr"; depends=[Biobase BiocGenerics boot MASS nnls]; }; + Ularcirc = derive2 { name="Ularcirc"; version="1.14.0"; sha256="0pqinw35vd94gk78i45rdyl4gyp6q8dmzc5kz72mcfg702wh7g8h"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicAlignments GenomicFeatures GenomicRanges ggplot2 ggrepel gsubfn mirbase_db moments Organism_dplyr plotgardener R_utils S4Vectors shiny shinydashboard shinyFiles shinyjs yaml]; }; + UniProt_ws = derive2 { name="UniProt.ws"; version="2.36.0"; sha256="0s63wpgcmg98ykccb8bcwnjzawz9isc4mxz4cirhb9dxl95axq3h"; depends=[AnnotationDbi BiocFileCache BiocGenerics httr rappdirs RSQLite]; }; + Uniquorn = derive2 { name="Uniquorn"; version="2.16.0"; sha256="0hf2gs0aw0jw9qw1bqhsvxvw5grppbi3wxbfiynkbvza11aglifw"; depends=[doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; }; + VAExprs = derive2 { name="VAExprs"; version="1.1.1"; sha256="026gipywc4xmap4p4x9wdmfd4208rx57bv5l8b2l1sd16wxvcazk"; depends=[CatEncoders DeepPINCS DiagrammeR keras mclust purrr scater SingleCellExperiment SummarizedExperiment tensorflow]; }; + VCFArray = derive2 { name="VCFArray"; version="1.12.0"; sha256="17zgwv8nc192jyzlym09zyqppbg6zlid60xzh921mvp41sprf2j9"; depends=[BiocGenerics DelayedArray GenomicFiles GenomicRanges Rsamtools S4Vectors VariantAnnotation]; }; + VERSO = derive2 { name="VERSO"; version="1.6.0"; sha256="13s91s03l15sha9sqcwazhhzph7s7ivbijlq1cz6c04x54bsdncn"; depends=[ape Rfast]; }; + VaSP = derive2 { name="VaSP"; version="1.8.0"; sha256="10fvdlxj4flv4zssaprhzg76l0jlin015pha7dmvfmjda4xm2zrl"; depends=[ballgown cluster GenomeInfoDb GenomicAlignments GenomicRanges IRanges matrixStats Rsamtools S4Vectors]; }; + VanillaICE = derive2 { name="VanillaICE"; version="1.58.0"; sha256="1m3fi8snnf5rklhnwj2wndk86ry27anpa9pkk43v35qx5cvm1q9p"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment]; }; + VarCon = derive2 { name="VarCon"; version="1.4.0"; sha256="0l0vgs2hmykkxp2s14pzwjzg3xbhcj5md3hfz85n0cn4j8qgf4hz"; depends=[Biostrings BSgenome GenomicRanges ggplot2 IRanges shiny shinycssloaders shinyFiles]; }; + VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.42.0"; sha256="0vda6xlraflp1i759a21ygba28ivn5g44i8fbsylk7j1klbhbbiz"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges MatrixGenerics Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; }; + VariantExperiment = derive2 { name="VariantExperiment"; version="1.10.0"; sha256="17xrlmr25iilrnmsicf42qc7alh8qfqg6v7sd5mpw4lzwxim1mqv"; depends=[Biostrings DelayedArray DelayedDataFrame GDSArray gdsfmt GenomicRanges IRanges S4Vectors SeqArray SeqVarTools SNPRelate SummarizedExperiment]; }; + VariantFiltering = derive2 { name="VariantFiltering"; version="1.32.0"; sha256="1bjqn8qik221x0bqvgd99p87v45iihwp6cxckh4ks964pd0c1xk8"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; }; + VariantTools = derive2 { name="VariantTools"; version="1.38.0"; sha256="18nxcamfgnw4n2ab0czxglw0sqc9wzdqzpjv43lcyyal23lzzsix"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + VegaMC = derive2 { name="VegaMC"; version="3.34.0"; sha256="172sa4zy4azyq50gxz9p4w23ac2xczwbq3nyp95q9zw9q6k7zcsk"; depends=[Biobase biomaRt]; }; + VennDetail = derive2 { name="VennDetail"; version="1.12.0"; sha256="0z98xhc636c291n76x9zxfcplgd3gc83fdvfbm8hjsmbp0fwca83"; depends=[dplyr futile_logger ggplot2 magrittr purrr tibble UpSetR VennDiagram]; }; + ViSEAGO = derive2 { name="ViSEAGO"; version="1.10.0"; sha256="0s5x81cd7az9bx74rpfqy1lcf4p494mcj5bgvb0ky7fgnfcn6b6d"; depends=[AnnotationDbi AnnotationForge biomaRt data_table dendextend DiagrammeR DT dynamicTreeCut fgsea ggplot2 GO_db GOSemSim heatmaply htmlwidgets igraph plotly processx R_utils RColorBrewer scales topGO UpSetR]; }; + VplotR = derive2 { name="VplotR"; version="1.6.0"; sha256="0k2gg4kjkhlha95yxknp16sj6idz7jsqimna7grcfabclqilypms"; depends=[cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr RColorBrewer reshape2 Rsamtools S4Vectors zoo]; }; + Wrench = derive2 { name="Wrench"; version="1.14.0"; sha256="1zx65s4m71wj85s2sq8ip54pq12r4sxfv8b2rxc41gfc5aj0zzca"; depends=[limma locfit matrixStats]; }; + XDE = derive2 { name="XDE"; version="2.42.0"; sha256="02nvrkj2pjc8jv57zilmx39bn9vxpj95f68gvf3sp6g3gffblv0d"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools mvtnorm RColorBrewer siggenes]; }; + XINA = derive2 { name="XINA"; version="1.14.0"; sha256="03gf7mqpnwx12kny9fsaskgrw83b0wi2cf1j4dbq46pfxjx34v1g"; depends=[alluvial ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; + XNAString = derive2 { name="XNAString"; version="1.4.0"; sha256="07y0n21i83izlnavwbxlhmrsa074k73d9p2cl19bj704sylw0g1j"; depends=[Biostrings BSgenome data_table formattable future_apply GenomicRanges IRanges Rcpp S4Vectors stringi stringr]; }; + XVector = derive2 { name="XVector"; version="0.36.0"; sha256="1f3sbqy279gb9k13l73j00ixywa1havlqy81zx766r1xkz15nvhk"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; }; + Xeva = derive2 { name="Xeva"; version="1.12.0"; sha256="1ajgaf00bik6dfk3zj0m211g38lxqdg99r99rz1n21nms6a4qzia"; depends=[BBmisc Biobase ComplexHeatmap doParallel downloader ggplot2 nlme PharmacoGx Rmisc scales]; }; + YAPSA = derive2 { name="YAPSA"; version="1.22.0"; sha256="1klqfif4sadkxw7agywk2ncvcdqsnfb1d6adnacdfdasr8abvhid"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap corrplot dendextend doParallel dplyr GenomeInfoDb GenomicRanges GetoptLong ggbeeswarm ggplot2 gridExtra gtrellis KEGGREST limSolve magrittr PMCMRplus pracma reshape2 SomaticSignatures VariantAnnotation]; }; + a4 = derive2 { name="a4"; version="1.44.0"; sha256="1zs8fs6mdd7fhsmx4k824mid0jk400cm6dwfhl8z5lg85y8y2n0r"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; }; + a4Base = derive2 { name="a4Base"; version="1.44.0"; sha256="15zqirz16gpks9f5d3d76h85b936za2jih74vfr55l5arqrrvvsn"; depends=[a4Core a4Preproc annaffy Biobase genefilter glmnet gplots limma mpm multtest]; }; + a4Classif = derive2 { name="a4Classif"; version="1.44.0"; sha256="1v61vgpqrf7bhk44n2gkxb8dm5d0rr8c9rd6fdcjs50nhij0lbiw"; depends=[a4Core a4Preproc Biobase glmnet pamr ROCR varSelRF]; }; + a4Core = derive2 { name="a4Core"; version="1.44.0"; sha256="1ky1lphq6bqxj6h12pg06cvs451fziqam8gd56wmpk6r5pbg4390"; depends=[Biobase glmnet]; }; + a4Preproc = derive2 { name="a4Preproc"; version="1.44.0"; sha256="098yzy7x5536bj76iavismdsdn7x6x07aw0j3knj6i9www9y8yz9"; depends=[Biobase BiocGenerics]; }; + a4Reporting = derive2 { name="a4Reporting"; version="1.44.0"; sha256="03sypayh187gqc6hykkqr1g0vb3zxc2c3xyp00jfbn12b35acnb0"; depends=[xtable]; }; + aCGH = derive2 { name="aCGH"; version="1.74.0"; sha256="00ni0kwy68v33ggfi8g5vffirhmbhaxg4l54hcqhx75m535z1x7d"; depends=[Biobase cluster multtest survival]; }; + abseqR = derive2 { name="abseqR"; version="1.14.0"; sha256="0jh3rj6ag07vpw6fymqm6m4jkrm9mgf50zkjncahxdf52mna8a9b"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; }; + acde = derive2 { name="acde"; version="1.26.0"; sha256="0lgq546y4qklfzbc6fjr3d656hn76p6dn4694qfiafql2nlsjbj2"; depends=[boot]; }; + adSplit = derive2 { name="adSplit"; version="1.66.0"; sha256="1wl2gd0b7krf485clw67cxayp0g9argklkzn8nw1vrkil0vvr4jm"; depends=[AnnotationDbi Biobase cluster GO_db KEGGREST multtest]; }; + adductomicsR = derive2 { name="adductomicsR"; version="1.12.0"; sha256="0623qf06xgdsyz0in2wnxwvpdw8kj6cnwf8vlqmgp7g0n3w701ys"; depends=[adductData ade4 AnnotationHub bootstrap data_table doSNOW dplyr DT ExperimentHub fastcluster foreach fpc mzR OrgMassSpecR pastecs pracma RcppEigen reshape2 rvest smoother zoo]; }; + affxparser = derive2 { name="affxparser"; version="1.68.1"; sha256="16x92gwsy7zdyz4md4cw847xn2ymqd6gqsn0rlr2nnf3qmnjnils"; depends=[]; }; + affy = derive2 { name="affy"; version="1.74.0"; sha256="02l77y4d4m4jwgkb3jdaskv6shmba5292whp0i29mg9asxv4rdc7"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; }; + affyContam = derive2 { name="affyContam"; version="1.54.0"; sha256="1pyd4rj6pp139kvhh97whi4afvx029w5lglr4mnscw7m3f618v0p"; depends=[affy affydata Biobase]; }; + affyILM = derive2 { name="affyILM"; version="1.48.0"; sha256="1rk68bhz2pyca4saiwd0kcw7sh2gs6d4c482jj4kx9r216mpb4q6"; depends=[affxparser affy Biobase gcrma]; }; + affyPLM = derive2 { name="affyPLM"; version="1.72.0"; sha256="1m3n5mvpg9g46rrglhdh94pppf71xp344yrcnw1i60vwv41vhbck"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; }; + affycomp = derive2 { name="affycomp"; version="1.72.0"; sha256="0aq5p56sqpvba0yhgd75302s9bazchh1izgymng6cpb78y5wfpj0"; depends=[Biobase]; }; + affycoretools = derive2 { name="affycoretools"; version="1.68.0"; sha256="14rrgq67hj6qn85wgwfq1frzy7x1pk1s7xg38cb65f6m4y5xx4wx"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 Glimma GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; }; + affyio = derive2 { name="affyio"; version="1.66.0"; sha256="19cw82qvzkz6vh2gm302y7digsf6xif7c9l2q9s6lkx2yflqpgfp"; depends=[zlibbioc]; }; + affylmGUI = derive2 { name="affylmGUI"; version="1.70.0"; sha256="0ic8cmssjpjkblrblfdpqqcaxn1izxk1hmcfdk1sphm7wfiw8l2n"; depends=[affy affyio affyPLM AnnotationDbi BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; }; + aggregateBioVar = derive2 { name="aggregateBioVar"; version="1.6.0"; sha256="0ngg12bgr95m4wm12scmrb55dgy4909c6qrg169l6dkng99v4nx1"; depends=[Matrix rlang S4Vectors SingleCellExperiment SummarizedExperiment tibble]; }; + agilp = derive2 { name="agilp"; version="3.28.0"; sha256="1pm329y2nfcnx98ggxq0prdd5pxfcl5iylvsjjnhw5lyz1awg1yf"; depends=[]; }; + airpart = derive2 { name="airpart"; version="1.4.0"; sha256="0ljankgvgf8rby4z340wxx8v7acs9yz955p3a40jl6y8rz1svc06"; depends=[apeglm clue ComplexHeatmap dplyr dynamicTreeCut emdbook forestplot ggplot2 lpSolve matrixStats mclust pbapply plyr RColorBrewer rlang S4Vectors scater SingleCellExperiment smurf SummarizedExperiment]; }; + alevinQC = derive2 { name="alevinQC"; version="1.12.0"; sha256="0g8ifinrqzncpw55ik2pz2l52fp5dkai2ghwfz1wwd2qn4x88zrv"; depends=[cowplot dplyr DT GGally ggplot2 Rcpp rjson rlang rmarkdown shiny shinydashboard tximport]; }; + alpine = derive2 { name="alpine"; version="1.22.0"; sha256="1nl1hxwakh5m9rqm3ksn2jzknsj9xnwl51bmc30knknm4q35wdv9"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; }; + altcdfenvs = derive2 { name="altcdfenvs"; version="2.58.0"; sha256="0caw9h0gw3qfrg4iqrydjdbagm059if513qjp1869cb0cq1w45r6"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; }; + amplican = derive2 { name="amplican"; version="1.18.0"; sha256="0q1c0g93xl0s2i6b1g21s11dngh7fbz63sn48yfiasvpxxlbag5q"; depends=[BiocGenerics BiocParallel Biostrings clusterCrit data_table dplyr GenomeInfoDb GenomicRanges ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats Rcpp rmarkdown S4Vectors ShortRead stringr waffle]; }; + animalcules = derive2 { name="animalcules"; version="1.12.0"; sha256="144949zlamwh0ykkw2n0qr019cn5pml95s3g59k5xkb85q6wykqc"; depends=[ape assertthat biomformat caret covr DESeq2 dplyr DT forcats ggplot2 glmnet GUniFrac lattice limma magrittr Matrix MultiAssayExperiment plotly plotROC rentrez reshape2 S4Vectors scales shiny shinyjs SummarizedExperiment tibble tsne umap vegan XML]; }; + annaffy = derive2 { name="annaffy"; version="1.68.0"; sha256="1fbqknwbl4534h66xrhcryg9pavm9fkja47gqbsxf8bd5yhk5mgq"; depends=[AnnotationDbi Biobase BiocManager DBI GO_db]; }; + annmap = derive2 { name="annmap"; version="1.38.0"; sha256="0ywqbb8jia7rrkzcsf6a11kqf8dnx96z8n8xw7067mahycykbixv"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; }; + annotate = derive2 { name="annotate"; version="1.74.0"; sha256="0x6vddpiw2g713vicf70198x8dlrwf36p8jjygdsfnl56ls5bh2g"; depends=[AnnotationDbi Biobase BiocGenerics DBI httr XML xtable]; }; + annotationTools = derive2 { name="annotationTools"; version="1.70.0"; sha256="122b424zida3j0vqkn8d06sg3jpc3ngsgidr8kgg00n4cjngkc51"; depends=[Biobase]; }; + annotatr = derive2 { name="annotatr"; version="1.22.0"; sha256="1fbax9v3d486c8lwf3yfjbf4w7zf53wmdpxk2clwm8ngm7w0pqm0"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; }; + anota = derive2 { name="anota"; version="1.44.0"; sha256="1x75r5znl8jllqsgzpxsqj62ch11bpwhmyzmbjmb8sz8f8ww923c"; depends=[multtest qvalue]; }; + anota2seq = derive2 { name="anota2seq"; version="1.18.0"; sha256="0mjgw1ncdl2pqqbkgsj8ws9nkj6zfh1dlygmh535jck6gg2rh454"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; }; + antiProfiles = derive2 { name="antiProfiles"; version="1.36.0"; sha256="1277kg5xpyb2yriyjy18p437q5lj22h4al7z7pygkzxzywxv9g40"; depends=[locfit matrixStats]; }; + apComplex = derive2 { name="apComplex"; version="2.62.0"; sha256="1h5xn9wm75rphikyjdnamyvlvqvy3hlgf4qgx540va9w7v9gfhqc"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; + apeglm = derive2 { name="apeglm"; version="1.18.0"; sha256="1ppwk4g66x46hpqsfsvhl12398d1srqr47nmp0y2gz212kff0rby"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; + appreci8R = derive2 { name="appreci8R"; version="1.14.0"; sha256="0r7x9dhy1bivcpqrcq43w2awg7y2ql92rarbvylxbzch8x07f70h"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools rsnps S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; + aroma_light = derive2 { name="aroma.light"; version="3.26.0"; sha256="1240v9wvsf205g998ms19hncki8g6shidg09dy5np9pqpiix4vys"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; + arrayMvout = derive2 { name="arrayMvout"; version="1.54.0"; sha256="1wh4hhd9qq14137yp0zi39wh9m458vfcfff7dsfdzpra565sdrjn"; depends=[affy affyContam Biobase lumi mdqc parody]; }; + arrayQuality = derive2 { name="arrayQuality"; version="1.74.0"; sha256="0bqxnny60sx474kk5cxd0id6gm1slypp8sqah1m80wd0vpwmp575"; depends=[gridBase hexbin limma marray RColorBrewer]; }; + arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.52.0"; sha256="0dqfl9agfr11mn38ibrf4jrfbhy4vcvn7ajd2mp7w2nmrfr0720i"; depends=[affy affyPLM beadarray Biobase genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG svglite vsn XML]; }; + artMS = derive2 { name="artMS"; version="1.14.0"; sha256="0mdcvlpnjkkgp08kh3smx49pw1bav5zsynp4vak6m937ngccnzsr"; depends=[AnnotationDbi bit64 circlize cluster corrplot data_table dplyr getopt ggdendro ggplot2 ggrepel gplots limma MSstats openxlsx org_Hs_eg_db pheatmap plotly plyr RColorBrewer scales seqinr stringr tidyr UpSetR VennDiagram yaml]; }; + atSNP = derive2 { name="atSNP"; version="1.12.0"; sha256="0dmv34xqwr3l2rznapxmyrkyf1w78qzxdv88s5nn8s1m8qdkgwkz"; depends=[BiocFileCache BiocParallel BSgenome data_table ggplot2 lifecycle motifStack rappdirs Rcpp testthat]; }; + atena = derive2 { name="atena"; version="1.2.0"; sha256="1jbnlxrk8npflym008cgrazamlsh6y624g1d6x648kcjd8zwvj6n"; depends=[AnnotationHub BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Matrix Rsamtools S4Vectors scales sparseMatrixStats SQUAREM SummarizedExperiment]; }; + attract = derive2 { name="attract"; version="1.48.0"; sha256="0f1fsv278kpnxvqg9qa5rw2k3zr8zws0ab73ldl60h6pv9cy8x82"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; + autonomics = derive2 { name="autonomics"; version="1.4.0"; sha256="00k04pp81s6s3dyzykh0cqn27gxyk2brkl0k8g40b8rh13s1w8qy"; depends=[abind assertive BiocFileCache BiocGenerics colorspace data_table edgeR ggplot2 ggrepel gridExtra limma magrittr matrixStats MultiAssayExperiment pcaMethods R_utils rappdirs readxl rlang S4Vectors scales stringi SummarizedExperiment tidyr]; }; + awst = derive2 { name="awst"; version="1.4.0"; sha256="0iw3zycmj95rmdx7f2w0j4yxkzd90y87lrzgdn9cyvvzi5avflav"; depends=[SummarizedExperiment]; }; + bacon = derive2 { name="bacon"; version="1.24.0"; sha256="1zvcxdj3r892898ik5gq3jdbfig1438qws4bwd465ik8vi7g39v8"; depends=[BiocParallel ellipse ggplot2]; }; + ballgown = derive2 { name="ballgown"; version="2.28.0"; sha256="0l8q3fymskxmsi5jcikzjz5xi66lpzgv7bjymir4izah2v68z708"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; + bambu = derive2 { name="bambu"; version="2.2.0"; sha256="0dc2hpnykr575jbrq9whmdabknl70s2hcs6gkmkl4kpv7xfqdq6w"; depends=[BiocGenerics BiocParallel BSgenome data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment tidyr xgboost]; }; + bamsignals = derive2 { name="bamsignals"; version="1.28.0"; sha256="0ywbxq829hclhr5bb6p77rspxvfs580zlwd2f5kr3an6rdgyx9ky"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; + bandle = derive2 { name="bandle"; version="1.0.0"; sha256="1f18k23hdjasbds37dsmd31ns4p1jm6bqfllw5za64z0mzd3dd29"; depends=[BH Biobase BiocParallel BiocStyle circlize dplyr ggalluvial ggplot2 ggrepel knitr lbfgs MSnbase plyr pRoloc pRolocdata Rcpp RcppArmadillo rlang robustbase S4Vectors tidyr]; }; + banocc = derive2 { name="banocc"; version="1.20.0"; sha256="10vaggq1w5jkxd8r2k1mhymzvb7x3h8afwn2pvmcpj022ka7xhbx"; depends=[coda mvtnorm rstan stringr]; }; + barcodetrackR = derive2 { name="barcodetrackR"; version="1.4.0"; sha256="0yxa15xkgqazw31vq4wm8v747bw4qb18m6i602pvynk0n5bgg3d3"; depends=[circlize cowplot dplyr ggdendro ggplot2 ggridges magrittr plyr proxy RColorBrewer rlang S4Vectors scales shiny SummarizedExperiment tibble tidyr vegan viridis]; }; + basecallQC = derive2 { name="basecallQC"; version="1.20.0"; sha256="07mcg0bs13apabhsip997nj6riqdrv9247azg379z6anaa0b0vpd"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; }; + basilisk = derive2 { name="basilisk"; version="1.8.0"; sha256="1p90wq8a9wrpqpgmcy4zgh5skdw65gg2gsb3lnx78zk9khq0yyzh"; depends=[basilisk_utils dir_expiry reticulate]; }; + basilisk_utils = derive2 { name="basilisk.utils"; version="1.8.0"; sha256="1jnqv0rlljkq27rd4ixl763v335f2aanm4fzr386yc81fj4vnmhk"; depends=[dir_expiry]; }; + batchelor = derive2 { name="batchelor"; version="1.12.0"; sha256="0mncnz1lfzj8si9s52z5k80vahx1m0abb6lrfwsnd7psmz5ddnhp"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph Matrix Rcpp ResidualMatrix S4Vectors ScaledMatrix scuttle SingleCellExperiment SummarizedExperiment]; }; + bayNorm = derive2 { name="bayNorm"; version="1.14.0"; sha256="12896sryq5bfbqglpk3dg9cdsq6rk3jhzdqcpyasvk6w7v1w8bin"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Matrix Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; }; + baySeq = derive2 { name="baySeq"; version="2.30.0"; sha256="1yqykndyv32s2rk7x86qf410qr0pigc8z4gdkl8vhj4dgyr47n2j"; depends=[abind edgeR GenomicRanges]; }; + bcSeq = derive2 { name="bcSeq"; version="1.18.0"; sha256="0bn3maqxayprrd73gwvxgqkk0zqc0nanw29wsnmvw7z1bd15zqy0"; depends=[Biostrings Matrix Rcpp]; }; + beachmat = derive2 { name="beachmat"; version="2.12.0"; sha256="0fc6vvjjq1mfjfj2zqkap3rwvinnfqjs0cpk1447sspvd1rjya8c"; depends=[BiocGenerics DelayedArray Matrix Rcpp]; }; + beadarray = derive2 { name="beadarray"; version="2.46.0"; sha256="09n38fmckc0zbsv150x8k7l0xqbbjjkxnyqx84lfxqjxs592dvjy"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 hexbin illuminaio IRanges limma reshape2]; }; + beadarraySNP = derive2 { name="beadarraySNP"; version="1.62.0"; sha256="0f07mjxm3d5636rd668i5710r57zkhn1j642ivghs61bjgmb3a01"; depends=[Biobase quantsmooth]; }; + beer = derive2 { name="beer"; version="1.0.0"; sha256="15s7ygx63by28hjks3b5w5ig72zvlzb8lxp1mv9vzzxjhp8jq33p"; depends=[BiocParallel cli edgeR PhIPData progressr rjags SummarizedExperiment]; }; + benchdamic = derive2 { name="benchdamic"; version="1.2.0"; sha256="0x06nm0wxndcib7y4q8w9yzs55m6vgqy89ynnkvpplikkxxh2nqn"; depends=[ALDEx2 BiocParallel corncob cowplot DESeq2 edgeR ffpe ggdendro ggplot2 limma MAST metagenomeSeq MGLM phyloseq plyr RColorBrewer reshape2 Seurat SummarizedExperiment zinbwave]; }; + bgx = derive2 { name="bgx"; version="1.62.0"; sha256="0q2y4n6bcc9pvz5sgfkw1lrb00rrp7q29i1vh7srdfmfhgpyz6bk"; depends=[affy Biobase gcrma Rcpp]; }; + bigPint = derive2 { name="bigPint"; version="1.12.0"; sha256="1hp69j2qcidrxqs3dxjjngb09nbzp5x2yy4jz1rjmv6ghif9ccfj"; depends=[DelayedArray dplyr GGally ggplot2 gridExtra hexbin Hmisc htmlwidgets plotly plyr RColorBrewer reshape shiny shinycssloaders shinydashboard stringr SummarizedExperiment tidyr]; }; + bigmelon = derive2 { name="bigmelon"; version="1.22.0"; sha256="1msch4qbifkdqv0bbw03xj6d9w28z91mf4ki41rqg6048cq17h2k"; depends=[Biobase BiocGenerics gdsfmt GEOquery illuminaio methylumi minfi wateRmelon]; }; + bioCancer = derive2 { name="bioCancer"; version="1.24.01"; sha256="0dyxwms1s19bmj5691fqk51ig2b0s5yf62j12gpd0xv1arcc2zy1"; depends=[AlgDesign AnnotationDbi Biobase clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier GO_db htmlwidgets httr org_Bt_eg_db org_Hs_eg_db plyr r_import R_methodsS3 R_oo radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; }; + bioDist = derive2 { name="bioDist"; version="1.68.0"; sha256="04nrvrcvpj0sn8p2i8n3ggsl2s7r4na576174i7bn1sj21vr0yb0"; depends=[Biobase KernSmooth]; }; + bioassayR = derive2 { name="bioassayR"; version="1.34.0"; sha256="0zbrci0vgk4qca28i0qb2izhyrz3r95l1w54h9h3zj9f3vd61wrz"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; }; + biobroom = derive2 { name="biobroom"; version="1.28.0"; sha256="04x1z9nchm4mbhqr31011zdprc4md156j4zf003s7xx0n278xsgh"; depends=[Biobase broom dplyr tidyr]; }; + biobtreeR = derive2 { name="biobtreeR"; version="1.8.0"; sha256="0cx46hdqqm6mbj0vp4y86axv0qccd4sgk2jwwjvnqp5pynq9bbqa"; depends=[httpuv httr jsonlite stringi]; }; + biocGraph = derive2 { name="biocGraph"; version="1.58.0"; sha256="1y59a7c4ahhn1g2wz2hkx83izfn8i85mmxxp63jdd0rg7zwhr6nn"; depends=[BiocGenerics geneplotter graph Rgraphviz]; }; + biocViews = derive2 { name="biocViews"; version="1.64.0"; sha256="1lahla53awdqiglfiygbxg5pkzfabym7n5abgyp1nvqsvsj0g126"; depends=[Biobase BiocManager graph RBGL RCurl RUnit XML]; }; + biocthis = derive2 { name="biocthis"; version="1.6.0"; sha256="1hdgjp00d2si3mr7m1d289i9wn7g927z6n8n27d5sm94lb91qln0"; depends=[BiocManager fs glue rlang styler usethis]; }; + biodb = derive2 { name="biodb"; version="1.4.0"; sha256="02i0n29bp9d9p1ibslxca5m37qsgny2hlgg7d364lf7kc6y2bqni"; depends=[BiocFileCache chk jsonlite lgr lifecycle openssl plyr progress R6 rappdirs Rcpp RCurl RSQLite stringr testthat withr XML yaml]; }; + biodbChebi = derive2 { name="biodbChebi"; version="1.2.0"; sha256="14sgjlklrvdz6wrsk8qbfmv98q8wcr229w1ra1kif7agvdqdw0ad"; depends=[biodb R6]; }; + biodbExpasy = derive2 { name="biodbExpasy"; version="1.0.0"; sha256="1a2g0i5jb6i3qvldiy1msdcpv3w65jpay2iavzmzsp228jp49v5f"; depends=[biodb chk R6 stringr]; }; + biodbHmdb = derive2 { name="biodbHmdb"; version="1.2.0"; sha256="16vmp1z1b0jsap7xd7wcr0fbpl75srrswmqhcq26biy23w1r93kj"; depends=[biodb R6 Rcpp testthat]; }; + biodbKegg = derive2 { name="biodbKegg"; version="1.2.0"; sha256="0fd2x5mbs9ir9k9nz9nqjmj08032d31w8mh61v8h25x5973qzaj4"; depends=[biodb chk lifecycle R6]; }; + biodbLipidmaps = derive2 { name="biodbLipidmaps"; version="1.2.0"; sha256="0zbw7jmkq3zaf2mp86yizsfm4nyamgi2fnlhn5bl0wvd01jrjlc0"; depends=[biodb lifecycle R6]; }; + biodbMirbase = derive2 { name="biodbMirbase"; version="1.0.0"; sha256="1ci7wf0wkqvrwqw04z57i0l9ldgzgmhwfwv69yrrz1a9yjfq82q6"; depends=[biodb chk R6 stringr]; }; + biodbNcbi = derive2 { name="biodbNcbi"; version="1.0.0"; sha256="1ymngw0wy2jr853v0r1gf3nb1q596f03gjhxxf0x2pkblpp85mqz"; depends=[biodb chk R6 XML]; }; + biodbNci = derive2 { name="biodbNci"; version="1.0.0"; sha256="19gv91mqscdzpxcia32hc03v62icjd79c8bkkmi2nmvaa4zsyjii"; depends=[biodb chk R6 Rcpp testthat]; }; + biodbUniprot = derive2 { name="biodbUniprot"; version="1.2.0"; sha256="13mcbj5sfpqify27cxzr566akm0riv27a7qkq64f848ca9y13lpa"; depends=[biodb R6]; }; + biomaRt = derive2 { name="biomaRt"; version="2.52.0"; sha256="0yn3kanyrplc89a900xiz33nw1v23mkljvd5isizgs8gzvwzf8xg"; depends=[AnnotationDbi BiocFileCache digest httr progress rappdirs stringr XML xml2]; }; + biomformat = derive2 { name="biomformat"; version="1.24.0"; sha256="12wqjipxhngmlnrdmx329dqmkmy2wa4nkkrhwaqv2nwy90dncs9n"; depends=[jsonlite Matrix plyr rhdf5]; }; + biomvRCNS = derive2 { name="biomvRCNS"; version="1.36.0"; sha256="0i576g7pkivqaxff1pkb760mdpx8v9fh071aic1mwfnlfa7k87ln"; depends=[GenomicRanges Gviz IRanges mvtnorm]; }; + biosigner = derive2 { name="biosigner"; version="1.24.0"; sha256="11w28nlz0f06idbna5k9xs891w516401l1zab5gg7s0z3xxaki4f"; depends=[Biobase e1071 MultiDataSet randomForest ropls]; }; + biotmle = derive2 { name="biotmle"; version="1.20.0"; sha256="1frig90krvfdk6nwpmslpj0pvligyzwzfwwci7hzwcmbglk5jj22"; depends=[assertthat BiocGenerics BiocParallel dplyr drtmle ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tibble]; }; + biovizBase = derive2 { name="biovizBase"; version="1.44.0"; sha256="1ffzf7yvl47l8v8a50m8g9q33hgwvxg4fcm8ld2yy8hd2zl86zyd"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + biscuiteer = derive2 { name="biscuiteer"; version="1.10.0"; sha256="0y7vbdaafiga16yr0d22w1v4p0jmczndcar0r0km06f5y1b74amr"; depends=[Biobase BiocGenerics BiocParallel biscuiteerData bsseq data_table DelayedMatrixStats dmrseq GenomeInfoDb GenomicRanges gtools HDF5Array Homo_sapiens impute IRanges Matrix matrixStats Mus_musculus QDNAseq qualV R_utils readr Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + blacksheepr = derive2 { name="blacksheepr"; version="1.10.0"; sha256="1b3ij0rzri4xxldinpk632m2px228xl1fy6vgj4f8mawymlfl6h7"; depends=[circlize ComplexHeatmap pasilla RColorBrewer SummarizedExperiment viridis]; }; + blima = derive2 { name="blima"; version="1.30.0"; sha256="1h3bnwlsi14l1f4kdmv6qqypfa09gml812k6fdni0i6m9g79yylv"; depends=[beadarray Biobase BiocGenerics Rcpp]; }; + bluster = derive2 { name="bluster"; version="1.6.0"; sha256="1g496yc7mdhshf6r0n8xhj7ax936ia5z2cx72lqyk2vzzzl5c4v8"; depends=[BiocNeighbors BiocParallel cluster igraph Matrix Rcpp S4Vectors]; }; + bnbc = derive2 { name="bnbc"; version="1.18.0"; sha256="1d2m98vpjl2ibzx61rr9a95v7wa5zz2s2bnymwmm08445dv33sy2"; depends=[BiocGenerics data_table EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp rhdf5 S4Vectors SummarizedExperiment sva]; }; + bnem = derive2 { name="bnem"; version="1.4.0"; sha256="1qh3kxy09q29s9sg17gg3yhvcq3p99mnvr6zm91izf8fgyivz912"; depends=[affy binom Biobase CellNOptR cluster epiNEM flexclust graph limma matrixStats mnem RColorBrewer Rgraphviz rmarkdown snowfall sva vsn]; }; + borealis = derive2 { name="borealis"; version="1.0.0"; sha256="0awcb7m56yzyglpxlbyvcg3l5cvsmrrlsdybmdyfla8qljz46rhc"; depends=[Biobase bsseq cowplot doMC dplyr DSS foreach gamlss gamlss_dist GenomicRanges ggplot2 plyr purrr R_utils rlang]; }; + brainflowprobes = derive2 { name="brainflowprobes"; version="1.10.0"; sha256="0vyzw4i28bz15z06rz57h1ipcxs5lqlwcpf58a1wz0gzn5na11js"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 bumphunter cowplot derfinder derfinderPlot GenomicRanges GenomicState ggplot2 RColorBrewer]; }; + branchpointer = derive2 { name="branchpointer"; version="1.22.0"; sha256="0rsfx60l6972nz4kpjly0h4sm48flfrwskgh1shl3hbq3bnli18b"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; }; + breakpointR = derive2 { name="breakpointR"; version="1.14.0"; sha256="0mx8lk8q69jq5wqwhp7qvqv1zvm3hj6z53z3sil0470ri7jdyh6l"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; }; + brendaDb = derive2 { name="brendaDb"; version="1.10.0"; sha256="0wg52zq664zdv8lh4s6662wrwwxf9blrpag7b89ywz8p8rsnnmvm"; depends=[BiocFileCache BiocParallel crayon curl dplyr magrittr purrr rappdirs Rcpp rlang stringr tibble tidyr xml2]; }; + bridge = derive2 { name="bridge"; version="1.60.0"; sha256="0w8l5fzid3iz7pb8wdggx2xli2jgcgyxvgnij2jl5blkg1dfzhc5"; depends=[rama]; }; + bsseq = derive2 { name="bsseq"; version="1.32.0"; sha256="1jpfib2vb6hd7pgh3d33jgch24lba175zmbalwsbgvlmmyyf1ki5"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp rhdf5 S4Vectors scales SummarizedExperiment]; }; + bugsigdbr = derive2 { name="bugsigdbr"; version="1.2.0"; sha256="1ib6aq0c07bjazh0clvn2nqx0vwpf1srp354rr162r37cix7mxlr"; depends=[BiocFileCache vroom]; }; + bumphunter = derive2 { name="bumphunter"; version="1.38.0"; sha256="0k92ps9chqsimbc7vsr8swg679zfv8nfn5zahbqq4nknhhy7hwxw"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; }; + cBioPortalData = derive2 { name="cBioPortalData"; version="2.8.0"; sha256="05nnj18bsxvxrghb8m3bb7z9w3wj3ijcgbqw0vsbszmhj9xhr5ja"; depends=[AnVIL BiocFileCache digest dplyr GenomeInfoDb GenomicRanges httr IRanges MultiAssayExperiment RaggedExperiment readr RTCGAToolbox S4Vectors SummarizedExperiment TCGAutils tibble tidyr]; }; + cTRAP = derive2 { name="cTRAP"; version="1.14.0"; sha256="13mkdc1fpik9wpcviil0m0ph9cr69b1isdwb8nwaszlhkb1spmas"; depends=[AnnotationDbi AnnotationHub binr cowplot data_table dplyr DT fastmatch fgsea ggplot2 ggrepel highcharter htmltools httr limma pbapply purrr qs R_utils readxl reshape2 rhdf5 rlang scales shiny shinycssloaders tibble]; }; + caOmicsV = derive2 { name="caOmicsV"; version="1.25.0"; sha256="10i4imjihmssdwfys21fsqng8zfp7sxzkc58m8qmnh6s5sccb3sz"; depends=[bc3net igraph]; }; + cageminer = derive2 { name="cageminer"; version="1.2.0"; sha256="04lmabxv3hgxd4b52qg7rbi01jsd18hi9dwi3i63si7073ij5ni7"; depends=[BioNERO GenomeInfoDb GenomicRanges ggbio ggplot2 ggtext IRanges reshape2]; }; + calm = derive2 { name="calm"; version="1.10.0"; sha256="0fmi5s7g9xcbznd4g4hngp1rgy4anwdqxi1isp40anyhgmn3i3kj"; depends=[mgcv]; }; + canceR = derive2 { name="canceR"; version="1.30.01"; sha256="1fv3dl7r67xhzzdrcwqyhr3g5pz8im0ll2rnyixskp1w55b98kjg"; depends=[Biobase circlize Formula geNetClassifier GSEABase httr phenoTest plyr R_methodsS3 R_oo rpart RUnit survival tkrplot]; }; + cancerclass = derive2 { name="cancerclass"; version="1.40.0"; sha256="1s80w8ksf735ps677c7dcwkkpq1ynjqmp2r4biqav4j1y50nbi57"; depends=[binom Biobase]; }; + casper = derive2 { name="casper"; version="2.30.0"; sha256="0rx23ppj78m7dinvrim3hdh330xdlv2yw5405akd32dxr5dhp0wh"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; + categoryCompare = derive2 { name="categoryCompare"; version="1.40.0"; sha256="1bidg957kjfg16w07gdbb8ygzipg2c47by9wilj4ijm32czv2ls7"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; + cbaf = derive2 { name="cbaf"; version="1.18.0"; sha256="1cl2gchmsarfn2j88nmjd1528dldhn0wb3dvavf3lxdgy90b0466"; depends=[BiocFileCache cBioPortalData genefilter gplots openxlsx RColorBrewer]; }; + cbpManager = derive2 { name="cbpManager"; version="1.4.0"; sha256="0h60a4cx3cgzbs9mchdasy7vgh6rm8vqp5w770328jwq9wyj3xkr"; depends=[basilisk dplyr DT htmltools jsonlite magrittr markdown plyr rapportools reticulate rintrojs shiny shinyBS shinycssloaders shinydashboard vroom]; }; + ccfindR = derive2 { name="ccfindR"; version="1.16.0"; sha256="1gg5508qxhv0g4k3m1iy3bzs53wlqbvnx3lsm77zmxhng38zzniv"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rdpack Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; + ccmap = derive2 { name="ccmap"; version="1.22.0"; sha256="03rw2k0ln1lr4c0sz06x1b8wyriq659bvngbb9wyr4mkcbjz5jy7"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; + ccrepe = derive2 { name="ccrepe"; version="1.32.0"; sha256="04dmka519ppp6c68wdw98qfi897jad5wr9az0j09kyzk92mkcl10"; depends=[infotheo]; }; + ceRNAnetsim = derive2 { name="ceRNAnetsim"; version="1.8.0"; sha256="1bl7nasll5p18b0g8q1d0wfx2min8897pkkw0hfp6ir6d85fkj4f"; depends=[dplyr furrr future ggplot2 ggraph igraph purrr rlang tibble tidygraph tidyr]; }; + celaref = derive2 { name="celaref"; version="1.14.0"; sha256="0pnnk7rq4yrl33ycxsxak3zz104350rzldi7hdnrp5aghr0jxjl6"; depends=[BiocGenerics DelayedArray dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; + celda = derive2 { name="celda"; version="1.12.0"; sha256="1qqm4pags5bp08w70419qlaghfr3r3pmb870k8ax9snbiqx32sp3"; depends=[circlize ComplexHeatmap data_table dbscan DelayedArray digest doParallel enrichR foreach ggplot2 ggrepel gtable Matrix matrixStats MCMCprecision multipanelfigure plyr RColorBrewer Rcpp RcppEigen reshape2 Rtsne S4Vectors scales scater scran SingleCellExperiment stringr SummarizedExperiment uwot withr]; }; + cellHTS2 = derive2 { name="cellHTS2"; version="2.60.0"; sha256="1mrf7mdhcbvvcizc8nr8mr6xp6k9zv6v97p3zz173iqhlwf0mvvn"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit RColorBrewer splots vsn]; }; + cellTree = derive2 { name="cellTree"; version="1.26.0"; sha256="0zpf05w4bcnjfzb8jqq936rs5ji84gpn72bndsk6ipg8s4lh0bav"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; }; + cellbaseR = derive2 { name="cellbaseR"; version="1.20.0"; sha256="0jk6ynq6h9xxwd8jlm5d2afb4kibkrh5212az4if175rn557wz6r"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; }; + cellity = derive2 { name="cellity"; version="1.24.0"; sha256="0ywghrfj6m6hcz9yvpq0ww3p05rxdrfjna7il9faa76va5m8ssly"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; }; + cellmigRation = derive2 { name="cellmigRation"; version="1.4.0"; sha256="09c6rmraajiqx7hgxmjyx4h32gdjy849ymyid0zvxqq4cfrx0pbs"; depends=[doParallel FactoMineR FME foreach Hmisc matrixStats reshape2 sp SpatialTools tiff vioplot]; }; + cellscape = derive2 { name="cellscape"; version="1.20.0"; sha256="1k0z7sw4d3wxy4sz42b6aplq2njm673sfqgzzyf6m8iax2rvgvhs"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; }; + cellxgenedp = derive2 { name="cellxgenedp"; version="1.0.0"; sha256="1wwprws57cnan2a97yb7flqvq5syawad374d6sksjvalad5ii6xh"; depends=[cpp11 curl dplyr DT httr jsonlite shiny]; }; + censcyt = derive2 { name="censcyt"; version="1.4.0"; sha256="03cr3l893b6250339d60xpf5mqcjl38fa9cpihy5gl83iy3dz9x4"; depends=[BiocParallel broom_mixed diffcyt dirmult dplyr edgeR fitdistrplus lme4 magrittr MASS mice multcomp purrr rlang S4Vectors stringr SummarizedExperiment survival tibble tidyr]; }; + cfDNAPro = derive2 { name="cfDNAPro"; version="1.2.0"; sha256="1bbmp324nl2ijbifhqyw074s2na391c359iyq03w73yd86w8fcc0"; depends=[dplyr ggplot2 magrittr quantmod rlang Rsamtools stringr]; }; + cghMCR = derive2 { name="cghMCR"; version="1.54.0"; sha256="0761pjajxgavxmrljzwksw0awdqrqxbi9cadqgixc0sj94rz82rd"; depends=[BiocGenerics CNTools DNAcopy limma]; }; + chimeraviz = derive2 { name="chimeraviz"; version="1.22.0"; sha256="06m60db90fnhm3r82n5zdbnwqlqnnc93cacaidizm5c29f7f3h40"; depends=[AnnotationDbi AnnotationFilter BiocStyle Biostrings checkmate data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph gtools Gviz IRanges magick org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; }; + chipenrich = derive2 { name="chipenrich"; version="2.20.0"; sha256="0nfxhghkygn16j21031kdwh27vmwzlvsj6cn7a9bcd2vr34kq31g"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra MASS mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; }; + chipseq = derive2 { name="chipseq"; version="1.46.0"; sha256="1vh0hvgnw7ykj401v1q807sl14s4nixp1d8xbm41n01q6w8x834i"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; }; + chopsticks = derive2 { name="chopsticks"; version="1.62.0"; sha256="0zhf3s8pbgvk1g2qkp1hs1yhsg87hpf71pf9v9sczcggnwcrgj8r"; depends=[survival]; }; + chromDraw = derive2 { name="chromDraw"; version="2.26.0"; sha256="0x6znw33r7791cs7504kih12r9alcvsvk2z8in98nhndzlfr99qh"; depends=[GenomicRanges Rcpp]; }; + chromPlot = derive2 { name="chromPlot"; version="1.24.0"; sha256="02k7l22hjvmkvnva28plbrxv87v7krbjivs2bxrl5jw6ksc5m4mj"; depends=[biomaRt GenomicRanges]; }; + chromVAR = derive2 { name="chromVAR"; version="1.18.0"; sha256="0vhsvkm4kvln0002f13ayk57f9fmiz1kw9vwpsm1vds1vahd656m"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; }; + chromstaR = derive2 { name="chromstaR"; version="1.22.0"; sha256="1xjwmnr4hk8v3nwvhqd6ixk5qr2dv0n4mb9wd6nl7cgjfhjsdgj7"; depends=[bamsignals BiocGenerics chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; }; + chromswitch = derive2 { name="chromswitch"; version="1.18.0"; sha256="1sdgmigr89kbbm2rcbjkjv9z8ig332a1lnk3mqpa15bkpapw7abm"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; }; + cicero = derive2 { name="cicero"; version="1.14.0"; sha256="1ip12ijazlmcfbym078slxykpkz7d1zwvs8l8aqdnqpxjfk1ipx5"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringi stringr tibble tidyr VGAM]; }; + circRNAprofiler = derive2 { name="circRNAprofiler"; version="1.10.0"; sha256="1gwm416shhv2p3gh1n6kv1rvx0n0imy25b7z62z4s8b3gs3nfp5j"; depends=[AnnotationHub Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 DESeq2 dplyr edgeR GenomeInfoDb GenomicRanges ggplot2 gwascat IRanges magrittr R_utils readr reshape2 rlang rtracklayer S4Vectors seqinr stringi stringr universalmotif]; }; + cisPath = derive2 { name="cisPath"; version="1.36.0"; sha256="07h948mxn2zjylv2y5q5w6rwqqmmha21xgwqpckzhgjh310jj674"; depends=[]; }; + cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.34.0"; sha256="1n1j9cz2v5bd0dbmpbb7pggixjsvyx3dfqjkmmqxir3dddbp6d0c"; depends=[Biostrings BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomeInfoDb GenomicRanges IRanges S4Vectors seqinr stringr]; }; + cleaver = derive2 { name="cleaver"; version="1.34.0"; sha256="0apg7cqsw4fzchdvval82h14xfbs89bv0cfq1ynwi1pbnhkxngp0"; depends=[Biostrings IRanges S4Vectors]; }; + cliProfiler = derive2 { name="cliProfiler"; version="1.2.0"; sha256="08hvj9zk42hf4r0cdd5pqxm2mk15salhk031fqbbks048hnqs42v"; depends=[Biostrings BSgenome dplyr GenomicRanges ggplot2 rtracklayer S4Vectors]; }; + clippda = derive2 { name="clippda"; version="1.46.0"; sha256="1nhkf1nchxf26b05bdi4qz1asyrbxgi80irx80w1scijn33yv3d7"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; }; + clipper = derive2 { name="clipper"; version="1.36.0"; sha256="1s2cwy1spds18yf9vsjdx5ywg9ww69hd5indq7syndcqh449mzyw"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; }; + cliqueMS = derive2 { name="cliqueMS"; version="1.10.0"; sha256="1fp5222wi91wk1fnw29gaiv02asidhrxzaq3da9isgjjvvr1gx63"; depends=[BH igraph matrixStats MSnbase qlcMatrix Rcpp RcppArmadillo xcms]; }; + clonotypeR = derive2 { name="clonotypeR"; version="1.34.0"; sha256="15nnj6c23bcnln1xsmxs7f13m13lvn6did7lvp7ij8gcb0vg2g6q"; depends=[]; }; + clst = derive2 { name="clst"; version="1.44.0"; sha256="0smr6kh6rk10zd2k8si79l3wdl2gdk6h3fh345a8m19rkv6sy455"; depends=[lattice ROC]; }; + clstutils = derive2 { name="clstutils"; version="1.44.0"; sha256="0w2gki24xf9m8qh1289hns8bkr7gj6big21lyb4p2mp652z1daw7"; depends=[ape clst lattice rjson RSQLite]; }; + clustComp = derive2 { name="clustComp"; version="1.24.0"; sha256="1svj1xvg8cn1hm5snw8yv764382vc41m7q2qjwv7cfyv7ri3ai42"; depends=[sm]; }; + clusterExperiment = derive2 { name="clusterExperiment"; version="2.16.0"; sha256="1xd2kxmdg51hhj0zvz7pxmpdvb1sya7prsf9ny2wj2y8ivrqgn4f"; depends=[ape BiocGenerics BiocSingular cluster DelayedArray edgeR HDF5Array howmany kernlab limma locfdr Matrix matrixStats mbkmeans NMF phylobase pracma RColorBrewer Rcpp S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; }; + clusterProfiler = derive2 { name="clusterProfiler"; version="4.4.1"; sha256="03bg3agisrm4q10gg57dksvd1ws37if6a1gwcxaybb4c50zadm8p"; depends=[AnnotationDbi DOSE downloader dplyr enrichplot GO_db GOSemSim magrittr plyr qvalue rlang tidyr yulab_utils]; }; + clusterSeq = derive2 { name="clusterSeq"; version="1.20.0"; sha256="0rh9ql3f1z79hxwlnsv5r8l0cpqyr6jxlz38f1aakshdlwdxlkiq"; depends=[baySeq BiocGenerics BiocParallel]; }; + clusterStab = derive2 { name="clusterStab"; version="1.68.0"; sha256="0p5dk9s3zrd5d2ap5i445jlkhjp7f8vh3dj3h59wya2n4phpigb4"; depends=[Biobase]; }; + clustifyr = derive2 { name="clustifyr"; version="1.8.0"; sha256="1c1lbgsmwafg9aa8j95x235270axp1g7mq41hmidc9mf4f6vclxc"; depends=[cowplot dplyr entropy fgsea ggplot2 httr Matrix matrixStats proxy readr rlang S4Vectors scales SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; + cmapR = derive2 { name="cmapR"; version="1.8.0"; sha256="0hh9if8zhb4nfh2l76fjj364kcp0km78qlb0i67xlhj8py27bhij"; depends=[data_table flowCore matrixStats rhdf5 SummarizedExperiment]; }; + cn_farms = derive2 { name="cn.farms"; version="1.44.0"; sha256="1dy0hd55h8ly4j4n713wal655j6p1sfpnhswczhn3k2xkzykb974"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; }; + cn_mops = derive2 { name="cn.mops"; version="1.42.0"; sha256="152l9nnncyyz182cnafw8ipy94jf7mizhr6xmvp3l4qj9yixr0y5"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + cnvGSA = derive2 { name="cnvGSA"; version="1.40.0"; sha256="0wvkn62i4g3r5fg7am6mmwri01gr5g5dil5mp5w4na57h1svsksc"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; }; + coGPS = derive2 { name="coGPS"; version="1.40.0"; sha256="1211fvcf6li32575p8638a6hf4a6bqqkx4jyfb8hpymhj5d4z5lx"; depends=[]; }; + coMET = derive2 { name="coMET"; version="1.28.0"; sha256="03b7a1b0g3zrh34ifjrylqdd1yi033lda6q71mir6plqr9y7fva1"; depends=[biomaRt colortools corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; + coMethDMR = derive2 { name="coMethDMR"; version="1.0.0"; sha256="0n89jv29mqrc2qjn7fv7zcn1ycsfrlsfs5ps1yiw5p77mq2rapp4"; depends=[AnnotationHub BiocParallel bumphunter ExperimentHub GenomicRanges IRanges lmerTest]; }; + coRdon = derive2 { name="coRdon"; version="1.14.0"; sha256="1kiw6kbbwqmr89mzppmgral0zxd5shmp53xyvbcr26fxs0xn1np2"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr stringr]; }; + codelink = derive2 { name="codelink"; version="1.64.0"; sha256="0r1srzx7z2833yvbnmdmbpkhy7irs4hdy2901bzqcwp91b4n6q75"; depends=[annotate Biobase BiocGenerics limma]; }; + cogena = derive2 { name="cogena"; version="1.30.0"; sha256="0xibcmnbaxsgq06wmh45263gp2f8m9llk2v5m2n1qlvcykyr7vwr"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2 stringr tibble tidyr]; }; + cogeqc = derive2 { name="cogeqc"; version="1.0.0"; sha256="1qy3hbr7z5hzgl4zdaxs1a1sna0xrwcl09iyvqdjh8fg9hv546yn"; depends=[Biostrings dplyr ggplot2 ggtree igraph patchwork reshape2 rlang]; }; + cola = derive2 { name="cola"; version="2.2.0"; sha256="1940aqpqnb31kkypnhrrp7lbsv70bxcqkcrjgjmc1ag58148mnka"; depends=[BiocGenerics brew circlize clue cluster ComplexHeatmap crayon digest doParallel eulerr foreach GetoptLong GlobalOptions httr impute irlba knitr markdown matrixStats mclust microbenchmark png RColorBrewer Rcpp skmeans xml2]; }; + comapr = derive2 { name="comapr"; version="1.0.0"; sha256="1m8jzgnkghwn7ci8jqr7zs4sj6lisnxri0wiw92m1vz9zibz3w5q"; depends=[BiocParallel circlize dplyr foreach GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz IRanges Matrix plotly plyr RColorBrewer reshape2 rlang S4Vectors scales SummarizedExperiment tidyr]; }; + combi = derive2 { name="combi"; version="1.8.0"; sha256="12rv2ic1y4ab4mj5jlrfgph9fbm44sqla8kqsjn2fwfw2zfzyfq4"; depends=[alabama BB Biobase cobs DBI ggplot2 limma Matrix nleqslv phyloseq reshape2 SummarizedExperiment tensor vegan]; }; + compEpiTools = derive2 { name="compEpiTools"; version="1.30.0"; sha256="1b7aasmm56ckfhb8b6im0p6yvlbn6njmn2jyvc8n1x0bxrpy3nv3"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; + compartmap = derive2 { name="compartmap"; version="1.14.0"; sha256="0iq19ca8jmdviacrm5aw6bicgnrkc84s1ywva8mc7lgwnc2fjrnw"; depends=[BiocSingular DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array Matrix RaggedExperiment reshape2 RMTstat rtracklayer scales SummarizedExperiment]; }; + compcodeR = derive2 { name="compcodeR"; version="1.32.0"; sha256="1xhjizalbi6ngr2jc2znbb83fxjns8yxc52k06yhfhrmmnjm73zi"; depends=[ape caTools edgeR ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS matrixStats modeest phylolm ROCR sm stringr vioplot]; }; + conclus = derive2 { name="conclus"; version="1.3.3"; sha256="1lgr0k1wf6a0dn4zvb6hpknr3dh10r3v81l3zlwnyfii5bnpi4a6"; depends=[AnnotationDbi Biobase BiocFileCache biomaRt clusterProfiler dbscan doParallel dplyr factoextra foreach fpc GEOquery ggplot2 gridExtra org_Hs_eg_db org_Mm_eg_db pheatmap rlang Rtsne scales scater scran SingleCellExperiment stringr SummarizedExperiment]; }; + condiments = derive2 { name="condiments"; version="1.4.0"; sha256="15b6zpj9ivj8i2rykd39ywmb8gyllgfkbmswrjb5jhkinqcj53lf"; depends=[BiocParallel distinct dplyr Ecume igraph magrittr matrixStats mgcv pbapply RANN SingleCellExperiment slingshot SummarizedExperiment TrajectoryUtils]; }; + consensus = derive2 { name="consensus"; version="1.14.0"; sha256="0hw9z5mqgnb0zy9sx5w96zsnnzywmlg7pqvvbs6lk33wyi7q42k6"; depends=[gplots matrixStats RColorBrewer]; }; + consensusDE = derive2 { name="consensusDE"; version="1.14.0"; sha256="1vgkvqxybpnw0sifp3lxvg9fd0y93p5x5xx7acay0mlg1vnbs3hp"; depends=[airway AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings data_table dendextend DESeq2 EDASeq edgeR EnsDb_Hsapiens_v86 ensembldb GenomicAlignments GenomicFeatures limma org_Hs_eg_db pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; }; + consensusOV = derive2 { name="consensusOV"; version="1.18.0"; sha256="0m1jw434b6pn7ymx9829nrvy1viqpl50d4mhvkpkx37qnv45qdfa"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; }; + consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.24.0"; sha256="1nc1ylr7mkj6bgxhyccxrvp3ybndr185c7ah9d3msvzp17497r13"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; }; + contiBAIT = derive2 { name="contiBAIT"; version="1.24.0"; sha256="19spydvgkypf695lb8pvhslf8sv340ancz5hdhvmfdb1ghhb62lk"; depends=[BH BiocGenerics BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; }; + conumee = derive2 { name="conumee"; version="1.30.0"; sha256="1pzg6vvzskxdfkwwshqa0vi498vi9341bkc5dinihm8qvjn2h268"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; }; + convert = derive2 { name="convert"; version="1.72.0"; sha256="0xj4k82q9547cls3dcs2wnlk6ssvcgawynsbmry9kqmjrl44ng20"; depends=[Biobase limma marray]; }; + copa = derive2 { name="copa"; version="1.64.0"; sha256="09g05jy46mq570dm0hs65j5axqswkyf0an68aqhl8g8kw0nq888j"; depends=[Biobase]; }; + copynumber = derive2 { name="copynumber"; version="1.36.0"; sha256="1gr8q9ri49x8qlmbsi6k6wcak1w9v48wr1qy7axc86brzx6z6mhd"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; }; + corral = derive2 { name="corral"; version="1.6.0"; sha256="028av863qqqgvkcsnl5180h7ryxx0xs5ya0zpj04a80vlcb0ikbz"; depends=[ggplot2 ggthemes gridExtra irlba Matrix MultiAssayExperiment pals reshape2 SingleCellExperiment SummarizedExperiment transport]; }; + coseq = derive2 { name="coseq"; version="1.20.0"; sha256="02w3s64d186qhivd2a6adxi8jwdxd5cs0mpbfrijiyxd37allhpx"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; }; + cosmiq = derive2 { name="cosmiq"; version="1.30.0"; sha256="1a0lqd4lgn2qx4p8d77dcn9gnymv42iv6jyz61rzawh6vkmj6f4m"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; }; + cosmosR = derive2 { name="cosmosR"; version="1.4.0"; sha256="1i2a5xajxzkk7m50vavygsnb4wadmf9qkfip90554l69ylvvafj7"; depends=[CARNIVAL dorothea dplyr GSEABase igraph progress purrr rlang stringr visNetwork]; }; + countsimQC = derive2 { name="countsimQC"; version="1.14.0"; sha256="0a5i0mb19ck65mqr4l695ngwj1qjapb3s7h52pn128qyywr02gla"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 randtests rmarkdown SummarizedExperiment tidyr]; }; + covEB = derive2 { name="covEB"; version="1.22.0"; sha256="0l04bsqcdb8m61mwrvq0d2gx2iz1kn2fbryxvhj5rsjrf72r6slk"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; }; + covRNA = derive2 { name="covRNA"; version="1.22.0"; sha256="031vxazqss5mi5clc15iw38xgc079vd17wf53fik1fynr84g5xpi"; depends=[ade4 Biobase genefilter]; }; + cpvSNP = derive2 { name="cpvSNP"; version="1.28.0"; sha256="0npggmics5lng86zsg132khak4hn15sb8w8qhxl19kdxiayf9dpa"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; }; + cqn = derive2 { name="cqn"; version="1.42.0"; sha256="1qipaskv2bqgc733sssalzygcbhdlnh6cxvk3w7nz3wlmjar2yqp"; depends=[mclust nor1mix preprocessCore quantreg]; }; + crisprBase = derive2 { name="crisprBase"; version="1.0.0"; sha256="0bcdnp56qyw2a4qmc5jkmq8cvn2n4kbmz0yavi8692myfdr35vlq"; depends=[BiocGenerics Biostrings GenomicRanges IRanges S4Vectors stringr]; }; + crisprBowtie = derive2 { name="crisprBowtie"; version="1.0.0"; sha256="1gdkpx81gg7m1s956n57r6bk5vi3f9qypl93762x1hr0pd03xy01"; depends=[BiocGenerics Biostrings BSgenome crisprBase GenomeInfoDb GenomicRanges IRanges Rbowtie readr stringr]; }; + crisprBwa = derive2 { name="crisprBwa"; version="1.0.0"; sha256="157nxk2ymjikw2madbyjxbihcdjav3gg5xmr6i5jp8jsm0m4hpjc"; depends=[BiocGenerics BSgenome crisprBase GenomeInfoDb Rbwa readr stringr]; }; + crisprScore = derive2 { name="crisprScore"; version="1.0.0"; sha256="19vwvjq7pw6m813saldns38y3rhg7a63f5cd5sly3qiai8qfa3bb"; depends=[basilisk BiocGenerics Biostrings crisprScoreData IRanges randomForest reticulate stringr XVector]; }; + crisprseekplus = derive2 { name="crisprseekplus"; version="1.22.0"; sha256="18xiwjbssyz7dphiafqza5awxb6b4g023r3lq51mggbqczhrqwfp"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; }; + crlmm = derive2 { name="crlmm"; version="1.54.0"; sha256="0znspkc8mvfq94687dzmzix1dnnz32nvv2pdhv9cay2q6sv3d6z5"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen VGAM]; }; + crossmeta = derive2 { name="crossmeta"; version="1.22.0"; sha256="03mlyz6bdzbbbb9fznlbc8d0yzcq1jbqlx7x25lkcf2bvrqfbbxf"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager data_table DBI DT edgeR fdrtool GEOquery limma matrixStats metaMA miniUI oligo RCurl reader readxl RSQLite shiny shinyBS shinyjs shinypanel shinyWidgets stringr sva tibble XML]; }; + csaw = derive2 { name="csaw"; version="1.30.0"; sha256="0hjfli504kn4mfh51p8aqd4g27fjxf2jjlpy149fb5ff79nfllgd"; depends=[BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicRanges IRanges limma Matrix metapod Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; }; + csdR = derive2 { name="csdR"; version="1.2.0"; sha256="02r3waqvv4v7pjbw2xv41y46ammlm5s04hg0pwpb327ia6pz9c1v"; depends=[glue matrixStats Rcpp RhpcBLASctl WGCNA]; }; + ctc = derive2 { name="ctc"; version="1.70.0"; sha256="0c9pgp25dqx12fmi4cqm7xyxjmy6g7wv9vbljgdjghaij2lrc4pb"; depends=[amap]; }; + ctgGEM = derive2 { name="ctgGEM"; version="1.7.0"; sha256="0hmapz96r024r3bws1wf0spd0i81viyma859y9nn93jrwxscrcdb"; depends=[Biobase BiocGenerics igraph Matrix monocle sincell SummarizedExperiment TSCAN]; }; + ctsGE = derive2 { name="ctsGE"; version="1.22.0"; sha256="0scqb397cx61sn9xsclg80wwjh3fvlc8a7l3fakmdmy3jc667ny8"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; }; + cummeRbund = derive2 { name="cummeRbund"; version="2.38.0"; sha256="1p4anmi436zykp0ir307g75g23kj8b7shxg4r65qq6zdwflphm0q"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; }; + customCMPdb = derive2 { name="customCMPdb"; version="1.6.0"; sha256="1h5zpxlvnywafbssf8pk143xw5b8n7ixl1dq76msvvhgharqhl87"; depends=[AnnotationHub BiocFileCache ChemmineR rappdirs RSQLite XML]; }; + customProDB = derive2 { name="customProDB"; version="1.36.0"; sha256="0bypa4xww5hsby7hs7l4p1lz790d8sk0qvjvciq0ai4f7nb4gwjr"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; }; + cyanoFilter = derive2 { name="cyanoFilter"; version="1.4.0"; sha256="0r30q9lxc3nwz90sv6ra7y2fdj04k0q1dz2hhw979v1yjndjqr6q"; depends=[Biobase cytometree flowClust flowCore flowDensity GGally ggplot2 mrfDepth]; }; + cycle = derive2 { name="cycle"; version="1.50.0"; sha256="0kwn6wbxc5zd0cp9wpb7x9yaf3zcrrs1bjq83y5wp9xxj2cbmn4k"; depends=[Biobase Mfuzz]; }; + cydar = derive2 { name="cydar"; version="1.20.0"; sha256="07lz3smlc4lsl3r2dnjjfvpymcw8msh2695v41vnrpabij489srl"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; + cytoKernel = derive2 { name="cytoKernel"; version="1.2.0"; sha256="1h49gmldw3bwwqsn05shsqxfwysxq5v06awn4v0dwnrxqgra0qym"; depends=[ashr BiocParallel circlize ComplexHeatmap data_table dplyr magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; + cytoMEM = derive2 { name="cytoMEM"; version="1.0.0"; sha256="0p822gg2r1842csyyyrxwh8pr8qa452zij8h0n5wi52wwmgdli6l"; depends=[flowCore gplots matrixStats]; }; + cytolib = derive2 { name="cytolib"; version="2.8.0"; sha256="18b532sicca5l8sn334prrm7g1z1cakiwydccz4i833168pnsjyg"; depends=[BH Rcpp RcppArmadillo RcppParallel Rhdf5lib RProtoBufLib]; }; + cytomapper = derive2 { name="cytomapper"; version="1.8.0"; sha256="1svr120n0a7mphi1nr6qds7iqj9dgdi2q0l6lfkx37dc89wd3nwr"; depends=[BiocParallel DelayedArray EBImage ggbeeswarm ggplot2 HDF5Array matrixStats nnls raster RColorBrewer rhdf5 S4Vectors shiny shinydashboard SingleCellExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; + dStruct = derive2 { name="dStruct"; version="1.2.0"; sha256="1wxvqs09aflwfrka8aij0sxwqwzm8ma2ab06wcs778l2gki230dv"; depends=[ggplot2 IRanges purrr reshape2 rlang S4Vectors zoo]; }; + daMA = derive2 { name="daMA"; version="1.68.0"; sha256="1mpjvl24wsdmpgra3iasgfvy29m71318gj6j1gg6081w0n4cq72m"; depends=[MASS]; }; + dada2 = derive2 { name="dada2"; version="1.24.0"; sha256="0nvjnmcjh0i660y8s3rh9b3zl163wxdx7qm2n36m6vf0iy987l4x"; depends=[BiocGenerics Biostrings ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; + dagLogo = derive2 { name="dagLogo"; version="1.34.0"; sha256="1k7a750gf0ww0s3pzxbd6ff5725321bq787z2r2lg6ysxh387f1l"; depends=[BiocGenerics biomaRt Biostrings motifStack pheatmap UniProt_ws]; }; + dasper = derive2 { name="dasper"; version="1.6.0"; sha256="0cv51fkmi29cnba750fkayycfgsn93wh5xll0m5rjpqz7lxzc83s"; depends=[basilisk BiocFileCache BiocParallel data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyranges readr reticulate rtracklayer S4Vectors stringr SummarizedExperiment tidyr]; }; + dcGSA = derive2 { name="dcGSA"; version="1.24.0"; sha256="1p0i81bh6knkyy0d86icsa4dcdx0mahhdgcg3fyqnzn6bhwhk3bg"; depends=[BiocParallel Matrix]; }; + dcanr = derive2 { name="dcanr"; version="1.12.0"; sha256="0c4x3b8azcrqlkhbs7db4qh7828yx311bx1bng6wy7121asni4kz"; depends=[circlize doRNG foreach igraph Matrix plyr RColorBrewer reshape2 stringr]; }; + dce = derive2 { name="dce"; version="1.4.0"; sha256="14sapfhbjy3cx4knnxjlskraf8ky2k6akg4vk4z1a6afxcfw7qc8"; depends=[assertthat CombinePValue dplyr edgeR epiNEM expm ggplot2 ggraph glm2 glue graph graphite harmonicmeanp igraph logger magrittr MASS Matrix metap mnem naturalsort org_Hs_eg_db pcalg ppcor purrr reshape2 Rgraphviz rlang shadowtext tidygraph tidyverse]; }; + ddCt = derive2 { name="ddCt"; version="1.52.0"; sha256="03vgihxh8k33vdd1g96iwy69lf9zl3rg2bn0zdnbhrj7rfiqvj3q"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; }; + ddPCRclust = derive2 { name="ddPCRclust"; version="1.16.0"; sha256="0pfscgbc241if2bj1xsj56nxcd31qq0wm39daznnjk155j5bfmx4"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; }; + dearseq = derive2 { name="dearseq"; version="1.8.1"; sha256="1f144k5gsclcmsnlsbisr2mivk91dbkci83wx1kznw6i15p4cpj1"; depends=[CompQuadForm dplyr ggplot2 KernSmooth magrittr matrixStats patchwork pbapply reshape2 rlang statmod survey tibble viridisLite]; }; + debCAM = derive2 { name="debCAM"; version="1.14.0"; sha256="1ynz57kkxl8nx80zhh1vhhydqb5n6r9d7p69f0k9nj8rp4hdgng7"; depends=[apcluster Biobase BiocParallel corpcor DMwR2 geometry NMF nnls pcaPP rJava SummarizedExperiment]; }; + debrowser = derive2 { name="debrowser"; version="1.24.0"; sha256="033b58qkqq4g4sv2wgq81az3kjka7gl29xnhnhzxkd96lzi1288f"; depends=[annotate AnnotationDbi apeglm ashr clusterProfiler colourpicker DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva]; }; + deco = derive2 { name="deco"; version="1.12.0"; sha256="18n5zgln33c79jbjzjlivs8ihyg8zci6minfqlvagxgzcpa67k0m"; depends=[ade4 AnnotationDbi Biobase BiocParallel BiocStyle cluster foreign gdata ggplot2 gplots gridExtra limma locfit made4 RColorBrewer reshape2 scatterplot3d sfsmisc SummarizedExperiment]; }; + decompTumor2Sig = derive2 { name="decompTumor2Sig"; version="2.12.0"; sha256="04hg9bbga2s8scjxfd8wjlmr45nzzvh8d6gr0w929sybx4nj2qz6"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo gridExtra Matrix plyr quadprog readxl S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; + decontam = derive2 { name="decontam"; version="1.16.0"; sha256="1g9hcfcfnpq6z21069yw0pyzncwznmvxb2xalg4y6y1604dy98q9"; depends=[ggplot2 reshape2]; }; + deconvR = derive2 { name="deconvR"; version="1.2.0"; sha256="091z3lncamscsvzj63zzbw7dr7vnkn0jwfkm5ljq4112w4rxgrm3"; depends=[assertthat BiocGenerics data_table dplyr e1071 foreach GenomicRanges IRanges magrittr MASS matrixStats methylKit nnls quadprog rsq S4Vectors tidyr]; }; + decoupleR = derive2 { name="decoupleR"; version="2.2.0"; sha256="0idsnhgi9xllkc8a9k8inl7pmqsz7z32cwsbkfwplakclg4bwad4"; depends=[broom dplyr magrittr Matrix purrr rlang stringr tibble tidyr tidyselect withr]; }; + deepSNV = derive2 { name="deepSNV"; version="1.42.0"; sha256="0si1x2bi5pff1dicpqg7hv4ziq46vm7lic72724ljsclpz9bfv6q"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; }; + deltaCaptureC = derive2 { name="deltaCaptureC"; version="1.10.0"; sha256="1v15v7lhxaymj2940k11z5bg5zpqsgncdpc4sxw8ff89m1ilwrlk"; depends=[DESeq2 GenomicRanges ggplot2 IRanges SummarizedExperiment tictoc]; }; + deltaGseg = derive2 { name="deltaGseg"; version="1.36.0"; sha256="1a2p4mx88n2hrg30gkilhisjf1hbnjqqv86hcji2ypz54axx7jdv"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; }; + densvis = derive2 { name="densvis"; version="1.6.0"; sha256="1w9j4gjk18mmfazl0rzma4mgwgg8s0rawxmyv4jysmdwirfr7jpl"; depends=[assertthat basilisk Rcpp reticulate]; }; + derfinder = derive2 { name="derfinder"; version="1.30.0"; sha256="1zyrfz26k8mscssfk7f0sjqgaf3xbp6ns89b4sfj2mpmf7m4m7rv"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; }; + derfinderHelper = derive2 { name="derfinderHelper"; version="1.30.0"; sha256="0r7zbx5bfmh5cjs12y8d9qwz53nz340gdy3sx7zcn4rzn7rpslp5"; depends=[IRanges Matrix S4Vectors]; }; + derfinderPlot = derive2 { name="derfinderPlot"; version="1.30.0"; sha256="0wp4bj9fccqccyz6nal2y52j88sb9llli65psnvnz2kv2m30j23p"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 S4Vectors scales]; }; + destiny = derive2 { name="destiny"; version="3.10.0"; sha256="1c85ky5ggdsi0ab1l4ipl85gc1kj1zv3wp08qrvslax3z0yw0ljy"; depends=[Biobase BiocGenerics ggplot_multistats ggplot2 ggthemes irlba knn_covertree Matrix pcaMethods proxy Rcpp RcppEigen RcppHNSW RSpectra scales scatterplot3d SingleCellExperiment smoother SummarizedExperiment tidyr tidyselect VIM]; }; + diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.78.0"; sha256="17m2m4srjafdj2c16lrh9kp82il5pnbcfhzn3kcyb1am2yyr6whi"; depends=[minpack_lm]; }; + diffHic = derive2 { name="diffHic"; version="1.28.0"; sha256="1gj3691ngsxkbh9n985jnm387xgcwy943fnjwfd03ycgpl5lv5js"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; }; + diffUTR = derive2 { name="diffUTR"; version="1.4.0"; sha256="018bpkg39mgw0y67d9b2n1h0i4p0383wj1kk4jfldvh9qa3hl3n5"; depends=[ComplexHeatmap DEXSeq dplyr edgeR ensembldb GenomeInfoDb GenomicRanges ggplot2 ggrepel IRanges limma matrixStats Rsubread rtracklayer S4Vectors stringi SummarizedExperiment viridisLite]; }; + diffcoexp = derive2 { name="diffcoexp"; version="1.16.0"; sha256="0l9gx1bvr0s9nys8qicw04s6kp5h7dg377bmlnjylygxn4znkjdf"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; }; + diffcyt = derive2 { name="diffcyt"; version="1.16.0"; sha256="0mysylzmg24g7lm1xan4yklzqmskfgh53j6vjcz2gzakz5rq3rdb"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; }; + diffloop = derive2 { name="diffloop"; version="1.24.0"; sha256="0v0jg9y08xzw775x2lm82ig1ag4wjf4z2l6a66zmk6qbn59dwj1g"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; }; + diffuStats = derive2 { name="diffuStats"; version="1.16.0"; sha256="0pkr77x48p3k5ahn7jfshd1zrzwqy57ynp8crh1ji0288hzrw78n"; depends=[checkmate expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; }; + diggit = derive2 { name="diggit"; version="1.28.0"; sha256="084nbx8sgdk3madsqgpia6jcl4fw20dzwbvphhbkws5yghf49pg8"; depends=[Biobase ks viper]; }; + dir_expiry = derive2 { name="dir.expiry"; version="1.4.0"; sha256="098wzm8hlpy70c99k2sl4k8z2dllhw7rwdj8dhcskr7kaw71k3sq"; depends=[filelock]; }; + discordant = derive2 { name="discordant"; version="1.20.0"; sha256="0896ch07zpbwif48nz9n91gzsdkf7ax68vylhlfvz5mbgdd1cc3f"; depends=[Biobase biwt dplyr gtools MASS Rcpp]; }; + distinct = derive2 { name="distinct"; version="1.8.0"; sha256="0g7591km80zz1jhy5d8ys9snmva79prx2v4sdm57whn93mxqyp0l"; depends=[doParallel doRNG foreach ggplot2 limma Matrix Rcpp RcppArmadillo Rfast scater SingleCellExperiment SummarizedExperiment]; }; + dittoSeq = derive2 { name="dittoSeq"; version="1.8.0"; sha256="1mjsci1vcnsz3w1i693vmnmhjdz10lm7d4qyvxdg202mk75gzv2r"; depends=[colorspace cowplot ggplot2 ggrepel ggridges gridExtra pheatmap reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + divergence = derive2 { name="divergence"; version="1.12.0"; sha256="0zh38cl5rsi7mx9nijhz8qrbjgfzrc4hgkcyywxady315zxfbl7y"; depends=[SummarizedExperiment]; }; + dks = derive2 { name="dks"; version="1.42.0"; sha256="1ljxin1c36glri7cq5mgw929gaivdakqhssdyblciy4y8qpkxa3s"; depends=[cubature]; }; + dmrseq = derive2 { name="dmrseq"; version="1.16.0"; sha256="1c99l62fi26bnbvpzrlsvvs722za0l5vfhddcrhzzzasabhccb4n"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; }; + doppelgangR = derive2 { name="doppelgangR"; version="1.24.0"; sha256="01n0xkd0fkdwiwrnd28pk08yf2n0004q7n2w87wirw65g04f56zd"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; }; + doseR = derive2 { name="doseR"; version="1.12.0"; sha256="1g793np07a9npv7vl8fwr9ijd7hbka6k101py3m99rw4wnp6dv0w"; depends=[digest edgeR lme4 matrixStats mclust RUnit S4Vectors SummarizedExperiment]; }; + dpeak = derive2 { name="dpeak"; version="1.8.0"; sha256="07cv8yd95diwz9aw4d4wqhb5v75rjh8rcii62x0dqb0nf6x47gcn"; depends=[BSgenome IRanges MASS Rcpp]; }; + drawProteins = derive2 { name="drawProteins"; version="1.16.0"; sha256="1rg0kji5rn4zp111cl09dkdd6bichrgd87kqa1623mcxa9xcn7np"; depends=[dplyr ggplot2 httr readr tidyr]; }; + drugTargetInteractions = derive2 { name="drugTargetInteractions"; version="1.4.0"; sha256="1njw15cmzicwnjcm4lhj15yhwzk0dqj8jsyqxy0yhc83vd0lny2n"; depends=[AnnotationFilter BiocFileCache biomaRt dplyr ensembldb rappdirs RSQLite S4Vectors UniProt_ws]; }; + dupRadar = derive2 { name="dupRadar"; version="1.26.0"; sha256="08n6dnf7ndk4kl4942jxl0ybxa3bw29na4vd98ip8vnbs3b03f8j"; depends=[Rsubread]; }; + dyebias = derive2 { name="dyebias"; version="1.56.0"; sha256="0xciqggk4vm31y9zq05iirkrhb9wy5m8pzzdjkzd4k80dvsiny30"; depends=[Biobase marray]; }; + easier = derive2 { name="easier"; version="1.2.0"; sha256="088lgpdc1mzhm10k19l2pch0q7zy9ydf78rc4av3w939kazkz9f3"; depends=[arules BiocParallel coin DESeq2 dorothea dplyr easierData ggplot2 ggrepel matrixStats progeny quantiseqr reshape2 rlang ROCR rstatix]; }; + easyRNASeq = derive2 { name="easyRNASeq"; version="2.32.0"; sha256="1dy1prn7qjvw7kjmq5cgdd0yvpw167f9m2azg1wxn2xfrdyb5ipr"; depends=[Biobase BiocFileCache BiocGenerics BiocParallel biomaRt Biostrings edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD rappdirs Rsamtools S4Vectors ShortRead SummarizedExperiment]; }; + easyreporting = derive2 { name="easyreporting"; version="1.8.0"; sha256="1jpgaa55zqnhqla0kid200c63ghwv0apm7p1g1z5ybrfxdlfrrkv"; depends=[rlang rmarkdown shiny]; }; + ecolitk = derive2 { name="ecolitk"; version="1.68.0"; sha256="07dax788x8p5dxwkw24hnlzkcpy72swzxl4ynhivjwixwy248diz"; depends=[Biobase]; }; + edge = derive2 { name="edge"; version="2.28.0"; sha256="1dld7pz3wwmfp4blnn6fh98dfybgw8b38vmydmfdrzim51p1h036"; depends=[Biobase jackstraw MASS qvalue snm sva]; }; + edgeR = derive2 { name="edgeR"; version="3.38.0"; sha256="17wbqbwaz8hvmpswj8869fjc410r0a5rfqqqw9jwlja9dn0h2agp"; depends=[limma locfit Rcpp]; }; + eegc = derive2 { name="eegc"; version="1.22.0"; sha256="16ixc3bn5qkqy5w38428avzrd078xq5h2r8g0csms9b09hxmj65z"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; }; + eiR = derive2 { name="eiR"; version="1.36.0"; sha256="0pnv2cfdkagq31v2q7x9yfzi1q79nj76k1i0d92wzkxh8j2rnmhh"; depends=[BiocGenerics ChemmineR DBI digest RcppAnnoy RCurl RUnit snow snowfall]; }; + eisaR = derive2 { name="eisaR"; version="1.8.0"; sha256="1c1nmrc6xvmxk40wiwrqysvnslrfr318lypd6qbgh7h3z5n70s0w"; depends=[BiocGenerics edgeR GenomicRanges IRanges limma S4Vectors SummarizedExperiment]; }; + enhancerHomologSearch = derive2 { name="enhancerHomologSearch"; version="1.2.0"; sha256="06wycza921fqycwff7fbyjxp64p7lyqinjglvwgv9jk85pxm1dxp"; depends=[BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges httr IRanges jsonlite Matrix motifmatchr Rcpp rtracklayer S4Vectors]; }; + enrichTF = derive2 { name="enrichTF"; version="1.12.0"; sha256="0fv50ma7jaqqbrzaznzvk6vza76if40f5vbxvl22s1ymk5chwk50"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; }; + enrichplot = derive2 { name="enrichplot"; version="1.16.0"; sha256="0i6v9wr7m3m4lm9vdp2mq41kkd0r4gfi8yxvhg9bbq1m3vb5hfmm"; depends=[aplot DOSE ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 scatterpie shadowtext yulab_utils]; }; + ensemblVEP = derive2 { name="ensemblVEP"; version="1.37.1"; sha256="0r8khb8z99jm9dnk9b1q55q3nlk7q0hrxif4dzkcq4j27ddrhd8a"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; + ensembldb = derive2 { name="ensembldb"; version="2.20.1"; sha256="183rs74ngfvn9xz36csch495pqaash90yhhikm73m7b2bc37ziwz"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; + epiNEM = derive2 { name="epiNEM"; version="1.20.0"; sha256="1bi0pjmdvlvfjvl6m6r7hd3bd6jdh18i3bnk3s6vpnb52hi35a07"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; }; + epialleleR = derive2 { name="epialleleR"; version="1.4.0"; sha256="0qw2wvrbfin2l80id06pr779l1mkvlafadkl3ja4s4nmn2ip5yfn"; depends=[BH BiocGenerics data_table GenomeInfoDb GenomicRanges Rcpp Rhtslib stringi SummarizedExperiment VariantAnnotation zlibbioc]; }; + epidecodeR = derive2 { name="epidecodeR"; version="1.4.0"; sha256="1fingfn0rbygvlhkgva6999sw4xc8g7k6w8nm86vw3dz5c77mq5f"; depends=[dplyr EnvStats GenomicRanges ggplot2 ggpubr IRanges rstatix rtracklayer]; }; + epigenomix = derive2 { name="epigenomix"; version="1.36.0"; sha256="15drlib696rylc4952rjnxrc0hfn5nskap93sz6f98b9v1g9gsmk"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; }; + epigraHMM = derive2 { name="epigraHMM"; version="1.4.0"; sha256="13cfc86yz7wvjm3mqnmmcqq0q01w35s4vwzjhvrkwck1yn4kkpf4"; depends=[bamsignals csaw data_table GenomeInfoDb GenomicRanges ggplot2 ggpubr GreyListChIP IRanges limma magrittr MASS Matrix pheatmap Rcpp RcppArmadillo rhdf5 Rhdf5lib Rsamtools rtracklayer S4Vectors scales SummarizedExperiment]; }; + epihet = derive2 { name="epihet"; version="1.12.0"; sha256="0v002h96b4p2sb30iszcvfvnzqm5dnw8klypmd0496zcr7dqk8jk"; depends=[data_table doParallel EntropyExplorer foreach GenomicRanges ggplot2 igraph IRanges pheatmap qvalue ReactomePA Rtsne S4Vectors WGCNA]; }; + epimutacions = derive2 { name="epimutacions"; version="1.0.0"; sha256="16gjqjqrbpsskrwp29pfw54ysv0p7755kvpcx9n4syzj8l1i0s2d"; depends=[BiocGenerics BiocParallel biomaRt bumphunter epimutacionsData GenomicFeatures GenomicRanges ggplot2 IRanges isotree matrixStats minfi robustbase S4Vectors SummarizedExperiment]; }; + epistack = derive2 { name="epistack"; version="1.2.0"; sha256="0vlxdl99y1hl6pzsc55khgw5r102vvlfqlm2d7z21vnvxr4dwijr"; depends=[BiocGenerics GenomicRanges IRanges plotrix S4Vectors SummarizedExperiment viridisLite]; }; + epivizr = derive2 { name="epivizr"; version="2.26.0"; sha256="1hzhx062qwfzg2fr61zzsnfzzkyn3z0i5b1pdxc99ba32qx1bphz"; depends=[bumphunter epivizrData epivizrServer GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + epivizrChart = derive2 { name="epivizrChart"; version="1.18.0"; sha256="0pyyypp75nbbxqcsid50r16qdhj280snl4jwbxqfjnqiyjh7wsrm"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; }; + epivizrData = derive2 { name="epivizrData"; version="1.24.0"; sha256="0givnx3if0jrxaflrz89g0qfzd9vnbm4dxc9mkyi06z8nbnhvwd0"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; }; + epivizrServer = derive2 { name="epivizrServer"; version="1.24.0"; sha256="0qs9l270pbpgrc1fim1spylbncgjkjrkd2mv2xvq7bvfc2h52wqk"; depends=[httpuv mime R6 rjson]; }; + epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.24.0"; sha256="1i8s27sw7dpsd6cmpfchc4qby34jbyqabdm0xplva89jfjn40gda"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; }; + erccdashboard = derive2 { name="erccdashboard"; version="1.30.0"; sha256="1nnxp34cj9zgk0bspq92jx9hi33777wdcvw3acykq9vy536ndi80"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; }; + erma = derive2 { name="erma"; version="1.12.0"; sha256="1ilq01cr2ipxpmp422fikiz6nj4nasjhj0ikcagjn2zmmarpgi1b"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; }; + esATAC = derive2 { name="esATAC"; version="1.18.0"; sha256="043r0mh4m26bx1r07alvidhl4bs8hxz5cmpkj6inl3q7xcv5wx0b"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2018 knitr magrittr motifmatchr pipeFrame R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; }; + escape = derive2 { name="escape"; version="1.6.0"; sha256="0llvja5aaqybr3ksyl7f1qjga0ax920y5mgnc5qbqbgzn02zh1fg"; depends=[BiocParallel broom data_table dplyr ggplot2 ggridges GSEABase GSVA Matrix MatrixGenerics msigdbr patchwork reshape2 rlang SingleCellExperiment stringr SummarizedExperiment UCell]; }; + esetVis = derive2 { name="esetVis"; version="1.22.0"; sha256="1nsh1hybcjf8gc79zzsbjjfr6l40l4n5jrnhrx6my35fmfn1c482"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; }; + eudysbiome = derive2 { name="eudysbiome"; version="1.26.0"; sha256="1pmk1x221hpds68yq2izwrfmvwd6v0gi0r40ggnlc9zrpx2s9fpm"; depends=[Biostrings plyr R_utils Rsamtools]; }; + evaluomeR = derive2 { name="evaluomeR"; version="1.12.0"; sha256="0wvha5ppx937b6qhxf95j0bwav07gq1bs2hw2q487mssksd7s1r2"; depends=[class cluster corrplot flexmix fpc ggdendro ggplot2 kableExtra MASS matrixStats mclust MultiAssayExperiment plotrix prabclus randomForest Rdpack reshape2 SummarizedExperiment]; }; + exomeCopy = derive2 { name="exomeCopy"; version="1.42.0"; sha256="0wfigjicbz22dijibbcz38j7javlj891q2f9mgwjpg6pwb0xi178"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; }; + exomePeak2 = derive2 { name="exomePeak2"; version="1.8.0"; sha256="1m5vmmarsmils7l3vwhcgi5lb517054qbcyhl5bqc9jahbzmdxkj"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DESeq2 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges magrittr mclust Rsamtools rtracklayer S4Vectors speedglm SummarizedExperiment]; }; + extraChIPs = derive2 { name="extraChIPs"; version="1.0.0"; sha256="0g5bc8887gmr1i5314spq363wfsvqz7170jxr18yz7lbamyqyca0"; depends=[BiocIO BiocParallel broom csaw dplyr edgeR EnrichedHeatmap forcats GenomeInfoDb GenomicInteractions GenomicRanges ggplot2 ggrepel ggside glue Gviz InteractionSet IRanges limma RColorBrewer rlang Rsamtools rtracklayer S4Vectors scales scatterpie stringr SummarizedExperiment tibble tidyr tidyselect vctrs]; }; + fCCAC = derive2 { name="fCCAC"; version="1.22.0"; sha256="1dn8srjg505725l3arx3cajd2zf0lipq9sqhqrym7km4vlpj58qn"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; }; + fCI = derive2 { name="fCI"; version="1.26.0"; sha256="17gdknml04m18ds0yjik8h8c778r0jqpd182yhzfzq2gldngnaya"; depends=[FNN gtools psych rgl VennDiagram zoo]; }; + fabia = derive2 { name="fabia"; version="2.42.0"; sha256="04apwymadah5vidbyg0ayp1lx6955c2626zgb6lhj6jhkhzqqxdv"; depends=[Biobase]; }; + factDesign = derive2 { name="factDesign"; version="1.72.0"; sha256="0q6bd3fv6s3br19wivaf2qpcxafw244nvipxixp8ss7a4zgn4qf7"; depends=[Biobase]; }; + famat = derive2 { name="famat"; version="1.5.0"; sha256="03gqkfss1prrchsawyfflzdw6bynjrwk3sxy78xzibh7w0ikkzsh"; depends=[clusterProfiler dplyr DT GO_db gprofiler2 KEGGREST magrittr MPINet ontologyIndex org_Hs_eg_db plotly reactome_db rWikiPathways shiny shinyBS shinydashboard stringr tidyr]; }; + farms = derive2 { name="farms"; version="1.48.0"; sha256="1mnmgd846ayjx1g31pwk186pq6pv0sdq114axpq41728ai3v347c"; depends=[affy Biobase MASS]; }; + fastLiquidAssociation = derive2 { name="fastLiquidAssociation"; version="1.32.0"; sha256="0q6zx6kwgv3lzl2gi8f6c9yzc6vl7kafjfbqnaa7q3a2h26dw9y4"; depends=[doParallel Hmisc impute LiquidAssociation preprocessCore WGCNA]; }; + fastreeR = derive2 { name="fastreeR"; version="1.0.0"; sha256="1skqg527nfpwknyj9k369l4qkzdm02dn262g8v3m4y75i9dw9s58"; depends=[ape data_table dynamicTreeCut R_utils rJava stringr]; }; + fastseg = derive2 { name="fastseg"; version="1.42.0"; sha256="1cr1b1jbgp1z1zpf71kl7mljbm2jpi6b97bf3bll3gnagfm489hy"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors]; }; + fcScan = derive2 { name="fcScan"; version="1.10.0"; sha256="0yv7ifw0xxx1v9z8dxszv0cb72q3frd74dyxfbvrcs6x9y9v3jzp"; depends=[doParallel foreach GenomicRanges IRanges plyr rtracklayer SummarizedExperiment VariantAnnotation]; }; + fcoex = derive2 { name="fcoex"; version="1.10.0"; sha256="0rkxxf71c5w4pfbzndp7mvq5aqz6qab4msb8xafhf1qakm4gc66m"; depends=[clusterProfiler data_table dplyr FCBF ggplot2 ggrepel igraph intergraph Matrix network pathwayPCA progress scales SingleCellExperiment sna stringr]; }; + fdrame = derive2 { name="fdrame"; version="1.68.0"; sha256="0a0vlji2knqkqa6waf6jcvvkhddn3gni0nnzwyhl1b48spqsim5l"; depends=[]; }; + fedup = derive2 { name="fedup"; version="1.4.0"; sha256="1qf9mf9zzli1l8m47slzxpb6j5gwn5khjgvw0abmw5y3m82r2fiq"; depends=[data_table dplyr forcats ggplot2 ggthemes openxlsx RColorBrewer RCy3 tibble]; }; + ffpe = derive2 { name="ffpe"; version="1.40.0"; sha256="034w4q9rgzad5mhk1vjpsgdzcp3snh9bk322gc581sls17502wdb"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; }; + fgga = derive2 { name="fgga"; version="1.4.0"; sha256="0m2vr8ny5m635ycsk819l65ppfwlyymb5vkzma0w0f25z328cg2b"; depends=[BiocFileCache curl e1071 graph gRbase jsonlite RBGL]; }; + fgsea = derive2 { name="fgsea"; version="1.22.0"; sha256="0innyggai6l4fpl4qrblzdc52vqw9jaszmip0yr1lv7rzwyl6mpg"; depends=[BH BiocParallel data_table fastmatch ggplot2 gridExtra Matrix Rcpp]; }; + fishpond = derive2 { name="fishpond"; version="2.2.0"; sha256="0svp4yh0srhzbbxy1grchzdd9yzchadjp3d2sy2n9xpwxzpkhrym"; depends=[abind GenomicRanges gtools IRanges jsonlite Matrix matrixStats qvalue Rcpp S4Vectors SingleCellExperiment SummarizedExperiment svMisc]; }; + flagme = derive2 { name="flagme"; version="1.52.0"; sha256="147m79v00gfk4fqjy9skacscnfyslxz0i9y4g7a5vwxz3mrrzidc"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; }; + flowAI = derive2 { name="flowAI"; version="1.26.0"; sha256="19964p0gni9x61fx24alb713dqyqd816l8s6azm6q0v89y15rqzl"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; }; + flowBeads = derive2 { name="flowBeads"; version="1.34.0"; sha256="1nn19kv3z0pv3hbvazp1x1lmm8rjw392q4d74rsz1hfwz0vj9j97"; depends=[Biobase flowCore knitr rrcov xtable]; }; + flowBin = derive2 { name="flowBin"; version="1.32.0"; sha256="10h7jhadmr1l8qw94fsxcrq581ir9136w91ah84c95m7297nr5r8"; depends=[BiocGenerics class flowCore flowFP limma snow]; }; + flowCHIC = derive2 { name="flowCHIC"; version="1.30.0"; sha256="0zj76ymr6cs27pg0k9gwzr67y5c3iav40fs4rjcjsi26bv5vxpsy"; depends=[EBImage flowCore ggplot2 hexbin vegan]; }; + flowCL = derive2 { name="flowCL"; version="1.34.0"; sha256="05dcxl99sw6d1ngq3wl61y1knmyrf4l9b7nrfmcbigb1isxgjy26"; depends=[graph Rgraphviz SPARQL]; }; + flowClean = derive2 { name="flowClean"; version="1.34.0"; sha256="15kq27136qqplmnj281hi29aakw63r1ip1whj2r87pwhkyz4ifmi"; depends=[bit changepoint flowCore sfsmisc]; }; + flowClust = derive2 { name="flowClust"; version="3.34.0"; sha256="055vm9s8aha92znhpjqkipzprw8bkrinwjaik4ygmhym7w6vbblk"; depends=[Biobase BiocGenerics flowCore graph]; }; + flowCore = derive2 { name="flowCore"; version="2.8.0"; sha256="17nci6rc4i0vs0ibw5q8zy30ap7q4550qpq4ifkbblqbyzxlzkhr"; depends=[BH Biobase BiocGenerics cytolib matrixStats Rcpp RcppArmadillo RProtoBufLib S4Vectors]; }; + flowCut = derive2 { name="flowCut"; version="1.6.0"; sha256="0p8mgx1q3hw9pfhg41mv9pigx0rakvhsdx5f3dlsqdv2ll85gi98"; depends=[Cairo e1071 flowCore flowDensity]; }; + flowCyBar = derive2 { name="flowCyBar"; version="1.32.0"; sha256="0hrccry4a5m3gg9zkawvhhlr4a3062vrq50gg5c48s0jvdng03hx"; depends=[gplots vegan]; }; + flowDensity = derive2 { name="flowDensity"; version="1.30.0"; sha256="0g8h43w9cb8l8dz14lahxqgy7ras48dl06c38b8j9bpissav68f3"; depends=[car flowCore flowViz flowWorkspace gplots RFOC rgeos sp]; }; + flowFP = derive2 { name="flowFP"; version="1.54.0"; sha256="0hmlajm6vdzrx3vmhi4wv4l0qszqc7z18ls361zrk1679nyxa4ms"; depends=[Biobase BiocGenerics flowCore flowViz]; }; + flowGraph = derive2 { name="flowGraph"; version="1.4.0"; sha256="0im9mjyynfl7yda6xcwbzai42p2q0q3g0f0j82hh044lidhpc14d"; depends=[data_table effsize furrr future ggiraph ggplot2 ggrepel gridExtra htmlwidgets igraph Matrix matrixStats purrr Rdpack stringi stringr visNetwork]; }; + flowMap = derive2 { name="flowMap"; version="1.34.0"; sha256="1yiw3fs850yi712bcx5j1v8sh0yavqzr0hnlxjbx6rpfp9wnrs5a"; depends=[abind ade4 doParallel Matrix reshape2 scales]; }; + flowMatch = derive2 { name="flowMatch"; version="1.32.0"; sha256="095azgkvjc5h4ycjgdw846gn4qizw29xmk4l5mqir4yvnlhxzaw9"; depends=[Biobase flowCore Rcpp]; }; + flowMeans = derive2 { name="flowMeans"; version="1.56.0"; sha256="1n4li43ydwwf5gvgmdml4ba28cxymybg5wnz6jvp35n959fwxv6y"; depends=[Biobase feature flowCore rrcov]; }; + flowMerge = derive2 { name="flowMerge"; version="2.44.0"; sha256="00sypimyhjgy44jh0ba200by79kgypm7yyqy7hr7y80rzxgkn55s"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; }; + flowPeaks = derive2 { name="flowPeaks"; version="1.42.0"; sha256="1a35ss0szgscfkvqvpdvvb9vgclhml27ggj7rpw4ndkl0m61565f"; depends=[]; }; + flowPloidy = derive2 { name="flowPloidy"; version="1.22.0"; sha256="0v5yci4zlf94wf0zgzdbmmlx0hcx5rz2d1dzmb0w8b6sckfvi3b6"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; }; + flowPlots = derive2 { name="flowPlots"; version="1.44.0"; sha256="0z38qvn2hd4ar17g8vp8fyj595nsys3yhb0m3fvv24mh48vasp4y"; depends=[]; }; + flowSpecs = derive2 { name="flowSpecs"; version="1.10.0"; sha256="1kjcphza5prrzc52aavshyshs2ck0spayp5jvrgk26a2dpk6xqhk"; depends=[Biobase BiocGenerics BiocParallel flowCore ggplot2 hexbin reshape2 zoo]; }; + flowStats = derive2 { name="flowStats"; version="4.8.0"; sha256="1jbc92ah2mlpnd7v3k0207v4qz3rg9g9yy6r6y0s0cc5nifdyhwj"; depends=[Biobase BiocGenerics cluster corpcor fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS mnormt ncdfFlow RColorBrewer rrcov]; }; + flowTime = derive2 { name="flowTime"; version="1.20.0"; sha256="1vv6s87brnfrs52s8rspq1xrs6ymq6gcb78ci7dvjj26y3p8pkfn"; depends=[dplyr flowCore magrittr plyr rlang tibble]; }; + flowTrans = derive2 { name="flowTrans"; version="1.48.0"; sha256="03amxbhfi3fkk9ip16bvdfnlqzi1by2xywcm8bd9ndimpqq12y8s"; depends=[flowClust flowCore flowViz]; }; + flowUtils = derive2 { name="flowUtils"; version="1.59.0"; sha256="11x362dqb9mjlsbq6g1qkb8hhnkvm22z5s3wkgmpyy9kyifjkm26"; depends=[Biobase corpcor flowCore graph RUnit XML]; }; + flowVS = derive2 { name="flowVS"; version="1.28.0"; sha256="1fhfmwh7ji3n823zl410zcgz0nmjmbc0awl3149vvl2s0p93jj2d"; depends=[flowCore flowStats flowViz]; }; + flowViz = derive2 { name="flowViz"; version="1.60.0"; sha256="175ygncrv6q6mb8pahixs89m9wm6hdpzx489gc9s8lgad2vrvz8f"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; }; + flowWorkspace = derive2 { name="flowWorkspace"; version="4.8.0"; sha256="0riyi9628cx1j5x6hmdd28yq75xh25j8ckcdz8dnb94dpvnhaqss"; depends=[aws_s3 aws_signature BH Biobase BiocGenerics cytolib data_table DelayedArray digest dplyr flowCore ggplot2 graph lattice latticeExtra matrixStats ncdfFlow RBGL Rcpp RcppArmadillo RcppParallel Rgraphviz Rhdf5lib RProtoBufLib S4Vectors scales XML]; }; + flowcatchR = derive2 { name="flowcatchR"; version="1.30.0"; sha256="1ixq18rmarg4kr6l747699b48zz6cj131zyfbmj5i28sdmbwjk1d"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; }; + fmcsR = derive2 { name="fmcsR"; version="1.38.0"; sha256="1mblmk21dxc9v2fikhvfg2njwgl190gkysppl6msxizwcmxsmh30"; depends=[BiocGenerics ChemmineR RUnit]; }; + fmrs = derive2 { name="fmrs"; version="1.6.0"; sha256="1jds04azfjdpn9pmmh0ghc274h4iqz5334gv6aq30w2m7gws35nz"; depends=[survival]; }; + fobitools = derive2 { name="fobitools"; version="1.4.0"; sha256="1y50xyiy02zpnvvxfp0sskgrp515m2d54nn6gqjsdv0vv8wlkvcs"; depends=[clisymbols crayon dplyr fgsea ggplot2 ggraph magrittr ontologyIndex purrr RecordLinkage stringr textclean tictoc tidygraph tidyr vroom]; }; + frenchFISH = derive2 { name="frenchFISH"; version="1.8.0"; sha256="12nixzdqkaxfv3jwcbf20npc9hpzkxpsm4a5znivg8ac60cw286p"; depends=[MCMCpack NHPoisson]; }; + frma = derive2 { name="frma"; version="1.48.0"; sha256="1w0q34jkmzqwdjxl4xrvg5nmv11n4l2qf180fwrknvp8am6nf6yx"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; }; + frmaTools = derive2 { name="frmaTools"; version="1.48.0"; sha256="0paas86hfqkvcgv00bbgidcaps8p3gvmfy8prq4rcda4lv8i67bl"; depends=[affy Biobase DBI preprocessCore]; }; + funtooNorm = derive2 { name="funtooNorm"; version="1.20.0"; sha256="02wkjj2nbghwa0ybmh58hl7r2863h9nw95rsd42xzvcp9vxkpfzz"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; }; + gCrisprTools = derive2 { name="gCrisprTools"; version="2.1.5"; sha256="0mi2g46rg4a0sb4774xqbshlj6nj7g0d56pfv35ajkpxdq61g1r1"; depends=[Biobase ComplexHeatmap ggplot2 limma rmarkdown RobustRankAggreg SummarizedExperiment]; }; + gaga = derive2 { name="gaga"; version="2.42.0"; sha256="17a2a73lgmgmrkznysd23c1qbddxcsnjdma7xa0pfjwrwskcisxb"; depends=[Biobase coda EBarrays mgcv]; }; + gage = derive2 { name="gage"; version="2.46.0"; sha256="03hx188h98qrbpjlf8v9sg2vqyfv49rp4c18ir11pg6hwqqrxh7b"; depends=[AnnotationDbi GO_db graph KEGGREST]; }; + gaggle = derive2 { name="gaggle"; version="1.64.0"; sha256="1w2819cx7s2hazifhv8iw54jjcvzacjwcpix045ay4fa98ryg7fz"; depends=[graph rJava RUnit]; }; + gaia = derive2 { name="gaia"; version="2.39.0"; sha256="023mw2dy6dni7h7a1ild1y6l741kp9bmjzzfyi70jipji1jig4pa"; depends=[]; }; + garfield = derive2 { name="garfield"; version="1.24.0"; sha256="1dp8z778ca4pj8da9nlhm80845mv4k7njnz5q4cdy7w1bhlfcjb7"; depends=[]; }; + gcapc = derive2 { name="gcapc"; version="1.20.0"; sha256="18y1xs8zy76j9vbxmx7d6g3rd2mw8diib083948l4sr2ipnb9rvl"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; }; + gcatest = derive2 { name="gcatest"; version="1.26.0"; sha256="1b6iscydh2c70dv2m5qdjf6zc3wbmk2jk18x00rbcxl10ckc451a"; depends=[lfa]; }; + gcrma = derive2 { name="gcrma"; version="2.68.0"; sha256="13a8igr2b02gsa6n3437kb33wg6h7si82fmqi35dzpfzhvx0qf6d"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; }; + gdsfmt = derive2 { name="gdsfmt"; version="1.32.0"; sha256="1cdwyivgfc6yw5hj9b3j57wx55gckwhx6fwx2lvqynrjzjyzf3q0"; depends=[]; }; + geNetClassifier = derive2 { name="geNetClassifier"; version="1.36.0"; sha256="1kh7mp5h0n7yd1klcd7w4v7i3fh9pkmvgf7189wangfzbcsr4f70"; depends=[Biobase e1071 EBarrays minet]; }; + gemini = derive2 { name="gemini"; version="1.10.0"; sha256="0kx38b5xaksn9ikk98b60hnalnxlcb9xs3vwbwsn90cg9h94cdar"; depends=[dplyr ggplot2 magrittr mixtools pbmcapply scales]; }; + genArise = derive2 { name="genArise"; version="1.72.0"; sha256="0jmk7ddwvh8hy9ri6a6rfhmbaglpqq43qxh1hjdw5k4ci87l7kd3"; depends=[locfit tkrplot xtable]; }; + genbankr = derive2 { name="genbankr"; version="1.24.0"; sha256="141adiac75vn232cn8bp1skzn2h4ns85k3g5wq179b6y6mr4zcv6"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; }; + geneAttribution = derive2 { name="geneAttribution"; version="1.22.0"; sha256="0f0nralfhzv59q9ia3mjdhdsrvi34z5mafgxb6gsb3ilbvx0yvz7"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; }; + geneClassifiers = derive2 { name="geneClassifiers"; version="1.20.0"; sha256="10kb03lkac3cc1pagl6az0phhw8nhmrckarshf9xqncj99rslbcw"; depends=[Biobase BiocGenerics]; }; + geneRecommender = derive2 { name="geneRecommender"; version="1.68.0"; sha256="1sl8mlz7nzskixjh5358wx4jvamzp5792dj2irjbfab2cr3kj8lc"; depends=[Biobase]; }; + geneRxCluster = derive2 { name="geneRxCluster"; version="1.32.0"; sha256="1q9l7734n2w23945x5sfi5yrvs09fq9b62y1li240amajpdqws1z"; depends=[GenomicRanges IRanges]; }; + geneXtendeR = derive2 { name="geneXtendeR"; version="1.22.0"; sha256="0qbhgarlr71fpg1ggxbqnj4h5n2wywl2zm95vdqr6vypplg6hjfa"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; }; + genefilter = derive2 { name="genefilter"; version="1.78.0"; sha256="1lp3alnljhsil8zylf8rvf8ik4wmsyciy3ij4rr9l4191dkkp4aq"; depends=[annotate AnnotationDbi Biobase BiocGenerics survival]; }; + genefu = derive2 { name="genefu"; version="2.28.0"; sha256="1a3q0qh5z5zva0d4jz521pcmig12h1hib3prbnnw1a74jxryan1i"; depends=[AIMS amap biomaRt iC10 impute limma mclust survcomp]; }; + geneplast = derive2 { name="geneplast"; version="1.22.0"; sha256="1k3s6ic2bawa690s641bqa3s412rk628cc55dwd3i43064ff25rc"; depends=[ape data_table igraph snow]; }; + geneplotter = derive2 { name="geneplotter"; version="1.74.0"; sha256="13230mzrdralnvf9jp032s16a8mk3kx5476nnvpa4pvcgp1i1ijc"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; }; + genoCN = derive2 { name="genoCN"; version="1.48.0"; sha256="0646y4y2wv367gdj0cy78hddyy0h964zz5ij8v9lzs0w63a72497"; depends=[]; }; + genomation = derive2 { name="genomation"; version="1.28.0"; sha256="0rvay7gs4g2wi6h42kln8xwy9b05axj1x8mkfayl6pnnlva6xj79"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer S4Vectors seqPattern]; }; + genomeIntervals = derive2 { name="genomeIntervals"; version="1.52.0"; sha256="1b2i1bdl9n1a7c9v8757w76s1aahhph6y0a7z9axanb8g8gx7bdp"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; }; + genomes = derive2 { name="genomes"; version="3.26.0"; sha256="1a8cla2k3x5x3pvxahzl5vfym5dxcffggk1jwzp91qqkp6dss0jf"; depends=[curl readr]; }; + genomicInstability = derive2 { name="genomicInstability"; version="1.2.0"; sha256="1lx4ln867wxc2bhn24s7b4xsrb1lymq48lw6dkc4s9dm98h49y4z"; depends=[checkmate mixtools SummarizedExperiment]; }; + genotypeeval = derive2 { name="genotypeeval"; version="1.28.0"; sha256="13pyr82xcwzmch9w0rlzlwzis5qs9fqsy0dknn7n79jj5ws6snr6"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; }; + genphen = derive2 { name="genphen"; version="1.24.0"; sha256="1m60qagcxviix4zjzfhvrwchbjq2clss6mivb8q07bcq369yw1b8"; depends=[Biostrings doParallel e1071 foreach ranger Rcpp rPref rstan]; }; + gep2pep = derive2 { name="gep2pep"; version="1.16.0"; sha256="1ry5h095gg1kq9idsq94dz843ldf6jz1pyg9sryfkszzyi7ddfhh"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; }; + gespeR = derive2 { name="gespeR"; version="1.28.0"; sha256="0i2r79k77rkw7yhwvpzif1m0llfxv42i9inad7i46630dxpwa1bf"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; }; + getDEE2 = derive2 { name="getDEE2"; version="1.6.0"; sha256="0c2air5mra7g80y7r7qpy2hplrh2k38jj5zn4sa5a4fcpniifx7v"; depends=[htm2txt SummarizedExperiment]; }; + geva = derive2 { name="geva"; version="1.4.0"; sha256="0zc9zxw2bifkkiqivmg8bf8xn9sff13bih55k9nxdabsgkkwhyad"; depends=[dbscan fastcluster matrixStats]; }; + ggbio = derive2 { name="ggbio"; version="1.44.0"; sha256="1lvms07ba99nzf10gpn50wjca84nj5jrb6902z069p2bfi4xyd27"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; }; + ggcyto = derive2 { name="ggcyto"; version="1.24.0"; sha256="0sycyvdpa77mykzr709a7padh6478zmnzapibbq90qkc7bxnj359"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra hexbin ncdfFlow plyr RColorBrewer rlang scales]; }; + ggmanh = derive2 { name="ggmanh"; version="1.0.0"; sha256="0bcdjvhablnxvakin5a4yhdpv5y5n9rqm21yz51mwjdfgz00p2mb"; depends=[gdsfmt ggplot2 ggrepel RColorBrewer rlang scales SeqArray]; }; + ggmsa = derive2 { name="ggmsa"; version="1.2.0"; sha256="0yrzx780dhs6kgs82gw63i1hxz8nbb9gzw2brc2rl1j1kfp6pp9l"; depends=[aplot Biostrings dplyr ggalt ggforce ggplot2 magrittr R4RNA RColorBrewer seqmagick tidyr]; }; + ggspavis = derive2 { name="ggspavis"; version="1.2.0"; sha256="0m0wfswz1jn7zhq527qa7q1x028zzrhg1zkw781w5p5i7ky0qzqf"; depends=[ggplot2 ggside SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + ggtree = derive2 { name="ggtree"; version="3.4.0"; sha256="033r748npv0l72yb9sk6lqnj0l7cd36ykf788145qv8ck5i2gyk4"; depends=[ape aplot dplyr ggfun ggplot2 magrittr purrr rlang scales tidyr tidytree treeio yulab_utils]; }; + ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.6.0"; sha256="02qbjw8yq9p1qw4gh9dz38iw0qpry8jizp22h2l8wrnkxxg0bllg"; depends=[ggnewscale ggplot2 ggtree rlang tidytree]; }; + girafe = derive2 { name="girafe"; version="1.48.0"; sha256="0633w8dyzrwqgnzj7zhr1hwqh617qpcp7cvs33pgsyxmdh52i32p"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; + glmGamPoi = derive2 { name="glmGamPoi"; version="1.8.0"; sha256="0k1qyljg89jvc4g3ixv8n50a1fmw3yfa7xjdvrfhbk3xsm6n1lh9"; depends=[beachmat BiocGenerics DelayedArray DelayedMatrixStats HDF5Array matrixStats Rcpp RcppArmadillo SummarizedExperiment]; }; + glmSparseNet = derive2 { name="glmSparseNet"; version="1.14.0"; sha256="0yvnmv7360a9fn5zsdnjf02b1xsl6r67gpj25x5vq83cl5gq5ac4"; depends=[biomaRt digest dplyr forcats futile_logger futile_options ggplot2 glmnet glue httr Matrix MultiAssayExperiment readr reshape2 stringr SummarizedExperiment survminer]; }; + globalSeq = derive2 { name="globalSeq"; version="1.24.0"; sha256="03fb4cd4nbyik7qjblq1fr94gn2xv6jvnb0jzxksdfb7lj8b0axi"; depends=[]; }; + globaltest = derive2 { name="globaltest"; version="5.50.0"; sha256="0mdh9xm9l70i5y4783xv76arx0601w6sz3l8h5bmpsavsz8kc9s5"; depends=[annotate AnnotationDbi Biobase survival]; }; + gmapR = derive2 { name="gmapR"; version="1.38.0"; sha256="0xmc9js5wpnaggf3ldplyxw5w4f2abavlsfzirr2qpik0ha8f7v8"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + gmoviz = derive2 { name="gmoviz"; version="1.8.0"; sha256="110pdblqnr2flmb2gvba6l22p6mrkrqzd1fi3c6pr80hshs7gc95"; depends=[BiocGenerics Biostrings circlize colorspace ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridBase IRanges pracma Rsamtools rtracklayer S4Vectors]; }; + goProfiles = derive2 { name="goProfiles"; version="1.58.0"; sha256="1cdnqsb00gbf9ff9bl19inkh20vmppnda2ib85alvwdbzmhsgflw"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; }; + goSTAG = derive2 { name="goSTAG"; version="1.20.0"; sha256="12ks45lglc23ipkbn89vdlf8l441g9kd2xh49qwinsj6c8zvmd75"; depends=[AnnotationDbi biomaRt GO_db memoise]; }; + goTools = derive2 { name="goTools"; version="1.70.0"; sha256="1bxxwrn420vlwkc9jn8jjrvykzzsr7j11lb6mv0i1zrkwpmcmcgp"; depends=[AnnotationDbi GO_db]; }; + goseq = derive2 { name="goseq"; version="1.48.0"; sha256="1w0rwzhqkvp2x7y5v0qcyjbss0p95gb1jrnx5sdkqginbvrmrd48"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; }; + gpart = derive2 { name="gpart"; version="1.13.0"; sha256="1518wjkaw22ckgpwl6si83bhijvib0r0kgs9s4das41f0ygi92sd"; depends=[AnnotationDbi biomaRt data_table GenomicRanges Homo_sapiens igraph IRanges OrganismDbi Rcpp TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + gpls = derive2 { name="gpls"; version="1.68.0"; sha256="0ai49lk7pba7k42p9wb67sp744gvkkb2rgfqzdpdwnjmndfxqyib"; depends=[]; }; + gprege = derive2 { name="gprege"; version="1.39.0"; sha256="12yjyb7a7jc86hdi3a3cavqxfzkhmds1m2vigzw5ihhx6028pa78"; depends=[gptk]; }; + gpuMagic = derive2 { name="gpuMagic"; version="1.12.0"; sha256="1g6zxs0wjj6fh23iv65iagyc8lrnzdjkbjv1yf8fq57brzhdl8zl"; depends=[BiocGenerics Deriv DescTools digest pryr Rcpp stringr]; }; + granulator = derive2 { name="granulator"; version="1.4.0"; sha256="0bw07kcrg3cwd73crfgm71hdjrp9pprrg5mzx55rmabymn78915s"; depends=[cowplot dplyr dtangle e1071 epiR ggplot2 ggplotify limSolve magrittr MASS nnls pheatmap purrr rlang tibble tidyr]; }; + graper = derive2 { name="graper"; version="1.12.0"; sha256="18dfk4d9cxgzmgb8wbagd1qlvlpwgs6nzdz6nzif6n4l6jg8x4b7"; depends=[BH cowplot ggplot2 Matrix matrixStats Rcpp RcppArmadillo]; }; + graph = derive2 { name="graph"; version="1.74.0"; sha256="1b8hrjwjg82kicls1496fxfzv75xjvq2k6r9apzsd3qlbyg3ilg4"; depends=[BiocGenerics]; }; + graphite = derive2 { name="graphite"; version="1.42.0"; sha256="0nl5mkgrvf7vsqjy48ij9b1dmxfvp9lf8cpay55h93c4qz4x606g"; depends=[AnnotationDbi graph httr rappdirs rlang]; }; + groHMM = derive2 { name="groHMM"; version="1.29.1"; sha256="03g904s3aydyap94bp69pfv6iwxp0pq7j09210ss6y2pzdk2xilm"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; }; + gscreend = derive2 { name="gscreend"; version="1.10.0"; sha256="1dymj9s11nqjv25a3adnhllkgi5dw5lvhgxkg6sd7qpkh1bvbmrx"; depends=[BiocParallel fGarch nloptr SummarizedExperiment]; }; + gsean = derive2 { name="gsean"; version="1.16.0"; sha256="1vp51nm7bydwljfl9bz4rvqdb5w7yj9zvm74373p2r1pad24r511"; depends=[fgsea PPInfer]; }; + gtrellis = derive2 { name="gtrellis"; version="1.28.0"; sha256="1s4xczzv6hz2kyv32xgcq84540w75qr3f644w1s4c3kwxgyq2gff"; depends=[circlize GenomicRanges GetoptLong IRanges]; }; + gwascat = derive2 { name="gwascat"; version="2.28.0"; sha256="1k4mxpldmvcp0wmyizs5yf45i09ww0lsq159p067490sgngvai8y"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges readr S4Vectors snpStats VariantAnnotation]; }; + gwasurvivr = derive2 { name="gwasurvivr"; version="1.14.0"; sha256="1cdknh3ib417ni76wcbns54syqycslj0nzip4pw3sqnsif361ak0"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; + h5vc = derive2 { name="h5vc"; version="2.30.0"; sha256="01vvf4bf4a5sfj5rz1b3bc8smvw3j260q4q11bqbq2xaw5lg64q7"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rhtslib Rsamtools S4Vectors]; }; + hapFabia = derive2 { name="hapFabia"; version="1.38.0"; sha256="1l50p1hnym8amvdfazp36zp3ijbfsgd8sddbcqivd3rp01898mmr"; depends=[Biobase fabia]; }; + hca = derive2 { name="hca"; version="1.4.0"; sha256="0i2q4vqz95vncxvd4wgsyza24k5rgjilxlpgs90r9ilzfnvs13h0"; depends=[BiocFileCache digest dplyr httr jsonlite readr tibble tidyr]; }; + heatmaps = derive2 { name="heatmaps"; version="1.20.0"; sha256="137cblqfn3w2nrlkffrxhpv1fd0ygy8njqf3n09gf2qw4vgzyz0g"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; + hermes = derive2 { name="hermes"; version="0.99.4"; sha256="0vf7gkfn1108hpq3asgdv8n34wgwxpgjz9wfawfhr4zldklfgg6f"; depends=[assertthat Biobase BiocGenerics biomaRt checkmate circlize ComplexHeatmap DESeq2 dplyr edgeR EnvStats forcats GenomicRanges ggfortify ggplot2 ggrepel IRanges lifecycle limma magrittr matrixStats MultiAssayExperiment purrr R6 Rdpack rlang S4Vectors SummarizedExperiment tidyr]; }; + hiAnnotator = derive2 { name="hiAnnotator"; version="1.30.0"; sha256="0f1imlql09dgckcvf3dr7knr26yjs0r1ryrq54r1lwz57s3rn152"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; + hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.32.0"; sha256="0cf0ris5c2xbbmsjnww9lwmmlhya21gmhxfsmcid4bi9gs94qpci"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl sonicLength]; }; + hierGWAS = derive2 { name="hierGWAS"; version="1.26.0"; sha256="0n8rbk3whs6ysjkdz6zwvdbw5gqrriyzdmyz2b09h6w1dl61cy43"; depends=[fastcluster fmsb glmnet]; }; + hierinf = derive2 { name="hierinf"; version="1.14.0"; sha256="0vls36kpz72vahjgx9ghb6aql2f9r5ny9nyg161jjfs1k4s2pr6d"; depends=[fmsb glmnet]; }; + hipathia = derive2 { name="hipathia"; version="2.12.0"; sha256="15ggym814jkcbx4kn2d9zi430vcgr50wbzvzj2f1d5qbdhbci9sh"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; }; + hmdbQuery = derive2 { name="hmdbQuery"; version="1.16.0"; sha256="0njxxbm58r6ikdh8j3765zy15paips94qyfhbbpb0xpqz7i1idcf"; depends=[S4Vectors XML]; }; + hopach = derive2 { name="hopach"; version="2.56.0"; sha256="0c2dx9l2dvhx74z4g2wvbz7m1h77jr257snlqsv2fkdv32m623k4"; depends=[Biobase BiocGenerics cluster]; }; + hpar = derive2 { name="hpar"; version="1.38.0"; sha256="07c6r703d5xp7y9bqmqalxgna2qrbk1h5s0d992m7360k259mgrj"; depends=[]; }; + hummingbird = derive2 { name="hummingbird"; version="1.6.0"; sha256="1zy35sayjclwcvv6agnvshxhr6l7nd9l0pxyxcfhj1hrqnw5xn14"; depends=[GenomicRanges IRanges Rcpp SummarizedExperiment]; }; + hypeR = derive2 { name="hypeR"; version="1.12.0"; sha256="1yk5119jv523kdh3sb85sdkbvrjj4xml8697l3d3f1n84qkicks4"; depends=[dplyr ggforce ggplot2 htmltools httr igraph kableExtra magrittr msigdbr openxlsx purrr R6 reactable reshape2 rlang rmarkdown scales shiny stringr visNetwork]; }; + hyperdraw = derive2 { name="hyperdraw"; version="1.48.0"; sha256="0ndw4y6b15jy4w86vfkahmdc81d3ycjsvqy1mxi55dwvd8xq0ap6"; depends=[graph hypergraph Rgraphviz]; }; + hypergraph = derive2 { name="hypergraph"; version="1.68.0"; sha256="0xmryqj5yw1ns6wbhjqbb6h14jlj89zrznzvqnvd4n03ci20kzzp"; depends=[graph]; }; + iASeq = derive2 { name="iASeq"; version="1.40.0"; sha256="1cwx3pc17lrrskzrq2ghj1vgjc2gmnwbkid531qpvdw0ixqb9jhr"; depends=[]; }; + iBBiG = derive2 { name="iBBiG"; version="1.40.0"; sha256="10p9iky61ym8bj1mpyjpslg2ixb3abic5bpfp4yqaqg4vq7a7wip"; depends=[ade4 biclust xtable]; }; + iBMQ = derive2 { name="iBMQ"; version="1.36.0"; sha256="0715hr72wvm14f6vb3j4ns94ii8g7kp6fgb7zjdjmqab92hqm1rd"; depends=[Biobase ggplot2]; }; + iCARE = derive2 { name="iCARE"; version="1.24.0"; sha256="1b09q6z240rc4cx9mz61f1l65khwxlq03f2sal0cf1y2584p4hxl"; depends=[gtools Hmisc plotrix]; }; + iCNV = derive2 { name="iCNV"; version="1.16.0"; sha256="12fyj9nxsfzckyb7qjwg8a4v335hzg0d0fgav3g00i30c7ldqlam"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; }; + iCOBRA = derive2 { name="iCOBRA"; version="1.24.1"; sha256="1gvra5bgsf6lvs4f2md3xx7xxsx4j8079c2nr8vz9lvy2sfyl6s9"; depends=[dplyr DT ggplot2 limma markdown reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; }; + iCheck = derive2 { name="iCheck"; version="1.26.0"; sha256="0phc4xr9vclmd2xkcjaa5l8w6v1748hs63asfbl0xl6xgj5475mc"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; }; + iChip = derive2 { name="iChip"; version="1.50.0"; sha256="0p5n20yjr94l76ibmlcvbq48zw9a14dpdza0k0mg16vq17lqz2rf"; depends=[limma]; }; + iClusterPlus = derive2 { name="iClusterPlus"; version="1.32.0"; sha256="0xzx3vly3p99zc5a69pra4jjp8d3bdhx7dl1l76w459cs58zy0sm"; depends=[]; }; + iGC = derive2 { name="iGC"; version="1.26.0"; sha256="1brdkdclmydj44485irzwva375zp13mf9vjw5xd5lhdq88ishnsc"; depends=[data_table plyr]; }; + iPAC = derive2 { name="iPAC"; version="1.40.0"; sha256="1h7dxq6isc5zbpi01zj4xsncs9a5l4x5lflqv0lfi2n11y8y4x40"; depends=[Biostrings gdata multtest scatterplot3d]; }; + iPath = derive2 { name="iPath"; version="1.2.0"; sha256="1gkw3j3fc5rydxzm3dhv10wwvnhgfb8hic1842irmnb3rqwg0khw"; depends=[BiocParallel ggplot2 ggpubr matrixStats mclust Rcpp RcppArmadillo survival survminer]; }; + iSEE = derive2 { name="iSEE"; version="2.8.0"; sha256="1smpd3hfs415g4qiz3s9d8qsy5n84ppy23q0vwhfg8gh2lypikzh"; depends=[BiocGenerics circlize colourpicker ComplexHeatmap DT ggplot2 ggrepel igraph mgcv rintrojs S4Vectors shiny shinyAce shinydashboard shinyjs shinyWidgets SingleCellExperiment SummarizedExperiment vipor viridisLite]; }; + iSEEu = derive2 { name="iSEEu"; version="1.8.0"; sha256="1j0ksx6sdk0g44yi3dccgnqhf9jqfzmax131d52q2s6yfn1m1dhw"; depends=[colourpicker DT ggplot2 IRanges iSEE S4Vectors shiny shinyAce SingleCellExperiment SummarizedExperiment]; }; + iSeq = derive2 { name="iSeq"; version="1.48.0"; sha256="09zba3mr55n42kyw89r4vbykczq3y97hsy2a55a2b8zmsh27w2dc"; depends=[]; }; + iasva = derive2 { name="iasva"; version="1.14.0"; sha256="070bda8fxm1gby2jq5zpbd85l10kxhsy7a8jac3s6rpf1saz70m1"; depends=[BiocParallel cluster irlba SummarizedExperiment]; }; + ibh = derive2 { name="ibh"; version="1.44.0"; sha256="0l7436yk3hv73zljg00mxa5nyilsxphhwliy5h3a4ci02pdfa92k"; depends=[simpIntLists]; }; + icetea = derive2 { name="icetea"; version="1.14.0"; sha256="1n642pa32yr6lmz4362875p5f6z1zdxdg96ljxfc1fsfkvdhjv0c"; depends=[BiocGenerics BiocParallel Biostrings csaw DESeq2 edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; }; + ideal = derive2 { name="ideal"; version="1.20.0"; sha256="0bgc7f2c1m777acmfx1lcsiga8kf4db6wx0rb56hwhq2yw2h1x7r"; depends=[AnnotationDbi base64enc BiocParallel DESeq2 dplyr DT GenomicRanges ggplot2 ggrepel GO_db goseq GOstats gplots heatmaply IHW IRanges knitr limma pcaExplorer pheatmap plotly rentrez rintrojs rlang rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; }; + idiogram = derive2 { name="idiogram"; version="1.72.0"; sha256="1w749dmbmgwrbxdpcakd48l6sfcshafqhlkrq5gzb6bhq1ll3xwy"; depends=[annotate Biobase plotrix]; }; + idpr = derive2 { name="idpr"; version="1.6.0"; sha256="1xl73m1lwy0336r5aan8sam8ac61h2flapj7m1ag0acpy0bhvg23"; depends=[Biostrings dplyr ggplot2 jsonlite magrittr plyr rlang]; }; + idr2d = derive2 { name="idr2d"; version="1.10.0"; sha256="0la044qyjnic6cbnvsas1dx7xgiz64qp4ygpsb1g6qhk2m0ybzj1"; depends=[dplyr futile_logger GenomeInfoDb GenomicRanges ggplot2 idr IRanges magrittr reticulate scales stringr]; }; + igvR = derive2 { name="igvR"; version="1.16.0"; sha256="0jaj600dcis1xd4hp6zw3j92zqi476zxlnb3lhcsszx7rg6lqnfp"; depends=[BiocGenerics BrowserViz GenomicAlignments GenomicRanges httpuv MotifDb RColorBrewer rtracklayer seqLogo VariantAnnotation]; }; + illuminaio = derive2 { name="illuminaio"; version="0.38.0"; sha256="1xk057a9w4ps8xi8jyw8imkjcicfmzns8g92grn4af7yiip68h62"; depends=[base64]; }; + imageHTS = derive2 { name="imageHTS"; version="1.45.1"; sha256="18cv1mss1vgm4zwx37nijc1riw2n9lwl73l2cfiqglblgdmyq2sm"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; }; + imcRtools = derive2 { name="imcRtools"; version="1.2.1"; sha256="1mkdi35amb0jlgk4kmbgfvwn1p1sss45zahhra8anrs1qzn6x2gm"; depends=[abind BiocNeighbors BiocParallel concaveman cytomapper data_table dplyr DT EBImage ggplot2 ggraph igraph magrittr pheatmap readr RTriangle S4Vectors scuttle sf SingleCellExperiment SpatialExperiment stringr SummarizedExperiment tidygraph viridis vroom]; }; + immunoClust = derive2 { name="immunoClust"; version="1.28.0"; sha256="10dwlg91wg38s97hivd8fm4wkmv0nv7xcw8dwdh2g7m5pip7nchp"; depends=[flowCore lattice]; }; + immunotation = derive2 { name="immunotation"; version="1.4.0"; sha256="06yknvqz65x3vgc9xykdwhsgqhz75jr038fwnjjr2ir8x9h6fri5"; depends=[curl ggplot2 maps ontologyIndex readr rlang rvest stringr tidyr xml2]; }; + impute = derive2 { name="impute"; version="1.70.0"; sha256="11b0z7py0im6y43k55xpzz5jnvc0ram9rk3n1n4mwhvs0vhy39r2"; depends=[]; }; + infercnv = derive2 { name="infercnv"; version="1.12.0"; sha256="01f021fdxm058733rky46dlvqg7dmf5mn5x9lnq0fspp5665w3bl"; depends=[ape argparse BiocGenerics caTools coda coin digest doParallel dplyr edgeR fastcluster fitdistrplus foreach futile_logger future ggplot2 gplots gridExtra HiddenMarkov leiden Matrix parallelDist phyclust RANN RColorBrewer reshape rjags SingleCellExperiment SummarizedExperiment tidyr]; }; + infinityFlow = derive2 { name="infinityFlow"; version="1.6.0"; sha256="14qdamv4ydbqwxw7gfm1yqzgihb7zxpi9irji0a5mnvvyrkzrfpz"; depends=[Biobase flowCore generics gtools matlab pbapply png raster uwot xgboost]; }; + intansv = derive2 { name="intansv"; version="1.36.0"; sha256="1x7386g0f1amjhvpb75ma86ifagh73d3yqmh1aq25r3cwgkgi9lc"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; }; + interacCircos = derive2 { name="interacCircos"; version="1.6.0"; sha256="1jk2mr271dabwjxz3a0habpy0cs6gh4wcdkl9yfb17g41qr3gd1s"; depends=[htmlwidgets plyr RColorBrewer]; }; + interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.34.0"; sha256="0flfn30q4qd0dp39qqswvg83vs568spbyiplqnsrp85nprnrxk9g"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; }; + interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.34.0"; sha256="0fdwx5ch0ch8axdkfiq7zzhhq5hwcvd6kf8fggw9nd3ah1yjwbdg"; depends=[BiocGenerics DT shiny]; }; + inveRsion = derive2 { name="inveRsion"; version="1.43.0"; sha256="0h2q10xf4x22hy7780w4pvq488921wzjngly8qcc97sa8iacssk3"; depends=[haplo_stats]; }; + ipdDb = derive2 { name="ipdDb"; version="1.14.0"; sha256="12wnl8gpkwvp3lvdw5qfjy8n2wpwgm7hgp0cx4lysyr7hchfjzi1"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; + isobar = derive2 { name="isobar"; version="1.42.0"; sha256="1z8qxdd4kqdi55g84lb8268nd270y4knzrpcm3b1gvxd91pynbq4"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; + isomiRs = derive2 { name="isomiRs"; version="1.24.0"; sha256="1w7fqfs8ncml52cy2g8i7phf2j2g1pw3wbsxhrkjipzzq6vk0h41"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics broom cluster cowplot DEGreport DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + iterClust = derive2 { name="iterClust"; version="1.18.0"; sha256="11j6ssy88v0wxqkx9b4skqi8jww8b4nh1gjl8smlnw98lvf5vwl4"; depends=[Biobase cluster]; }; + iterativeBMA = derive2 { name="iterativeBMA"; version="1.54.0"; sha256="1ykn4cac33w85gxh1bbqcg06xx0jsx1ivq4477h0057y3vf09cck"; depends=[Biobase BMA leaps]; }; + iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.54.0"; sha256="0fll6aqmh4dbrn4pv8nwp5cnsc2jd40clfnb76zzgi6qka5h2kms"; depends=[BMA leaps survival]; }; + iteremoval = derive2 { name="iteremoval"; version="1.15.1"; sha256="0bwl8lzxvf5azwyacv9x16l4kyi8l00xny2s83gp2kng5gyz8602"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; }; + ivygapSE = derive2 { name="ivygapSE"; version="1.18.0"; sha256="04ril40rs4y4j8b8pbxxgj3qzxy5n7vcd9wfdmfr10c9j489sixw"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; }; + karyoploteR = derive2 { name="karyoploteR"; version="1.22.0"; sha256="0hawq9wi3ikvlcdgnjfy5fiiwfq22zwx1p8xf5h4bpypp96pknsk"; depends=[AnnotationDbi bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors VariantAnnotation]; }; + kebabs = derive2 { name="kebabs"; version="1.30.0"; sha256="04ipdf3vcmg2817i314vkxw8yy358iwq9i23f1bwa86qq0a1q6f0"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; }; + keggorthology = derive2 { name="keggorthology"; version="2.48.0"; sha256="1a5cjsp610pvr7s27schr3hi06i47v73f0f6n5wzf6062cjvrrbh"; depends=[AnnotationDbi DBI graph hgu95av2_db]; }; + kissDE = derive2 { name="kissDE"; version="1.16.0"; sha256="16gx3cpmi1xb78g12aiajm6k93fx5wk0j82kv682dd2j8qzfxq1n"; depends=[ade4 aods3 Biobase DESeq2 doParallel DSS DT factoextra foreach ggplot2 gplots matrixStats shiny shinycssloaders]; }; + lapmix = derive2 { name="lapmix"; version="1.62.0"; sha256="15ydcqvawmwradx20x5jz0lrvfrgfjxgnfcnrxxknv5iqh2d035y"; depends=[Biobase]; }; + ldblock = derive2 { name="ldblock"; version="1.26.0"; sha256="08ss03b93czwb4x60hsi30ad4lmamvq5mxa8nj0g18z68qcraijm"; depends=[BiocGenerics EnsDb_Hsapiens_v75 ensembldb GenomeInfoDb GenomicFiles httr Matrix Rsamtools snpStats VariantAnnotation]; }; + lefser = derive2 { name="lefser"; version="1.6.0"; sha256="0n3gf60c4r1p81ifn4xklmm3npp790p8vw7mdi1f6bb5vm373rj0"; depends=[coin ggplot2 MASS SummarizedExperiment]; }; + les = derive2 { name="les"; version="1.46.0"; sha256="07c805gcyc7b462hbkvkkjajk8sn735j1js452lz67ixf03pwcaq"; depends=[boot fdrtool gplots RColorBrewer]; }; + levi = derive2 { name="levi"; version="1.14.0"; sha256="1dh314yd0zpnmi2vfnf41fhzpg76cgwgzkbm93vcxwrszj53cljc"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 rmarkdown shiny shinydashboard shinyjs testthat xml2]; }; + lfa = derive2 { name="lfa"; version="1.26.0"; sha256="044866h4fnxmzb3sh9vmrd2smgsbcqgvd19dgwxisi418cad577l"; depends=[corpcor]; }; + limma = derive2 { name="limma"; version="3.52.0"; sha256="1hzxcsbpm1qrbz2fwq4s3v6xcnvbdzzkhk5chp7w3i1qqkccks1l"; depends=[]; }; + limmaGUI = derive2 { name="limmaGUI"; version="1.72.0"; sha256="1sq20bdnc9j93iink9cs1p50alzgqfjcxikr8p0dfvd96c4js5b7"; depends=[limma R2HTML tkrplot xtable]; }; + lineagespot = derive2 { name="lineagespot"; version="1.0.0"; sha256="0bn0rr7c8x576p53d7p7q0hs7dh5y7dm4z5dgcrp9m8pqgdq3n9h"; depends=[data_table httr MatrixGenerics stringr SummarizedExperiment VariantAnnotation]; }; + lionessR = derive2 { name="lionessR"; version="1.10.0"; sha256="182hyz7acnlmprfn3555d1li73abahkylznrnqzizyi20r3nwczq"; depends=[S4Vectors SummarizedExperiment]; }; + lipidr = derive2 { name="lipidr"; version="2.10.0"; sha256="053q300caqn2a5rjxxc6c9b5drrk1y6bllm96rb7nxlwxzkkjlpg"; depends=[data_table dplyr fgsea forcats ggplot2 imputeLCMD limma magrittr rlang ropls S4Vectors SummarizedExperiment tidyr]; }; + lisaClust = derive2 { name="lisaClust"; version="1.4.0"; sha256="0411vkzz5rh937qcamrsmyvrjbncjgj961lmvd9vqpbf2srvd902"; depends=[BiocGenerics BiocParallel class concaveman data_table dplyr ggplot2 purrr S4Vectors spatstat_core spatstat_geom spicyR tidyr]; }; + lmdme = derive2 { name="lmdme"; version="1.38.0"; sha256="1x56d40v9v0jz9dmxqkvpc756fqwh31119qx1bsamrz03263fhw8"; depends=[limma pls stemHypoxia]; }; + loci2path = derive2 { name="loci2path"; version="1.16.0"; sha256="03gqzjn619fz7c53lcj3p7kycdl7minmv81zszf0jw5m8xgab7a5"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; + logicFS = derive2 { name="logicFS"; version="2.16.0"; sha256="06y064fkns71m4h7w7mmf75myd22zv000g7drkxwx25x6jqghcgg"; depends=[LogicReg mcbiopi survival]; }; + logitT = derive2 { name="logitT"; version="1.54.0"; sha256="0z8yphvca5glhwbrzdd5vz07243akm0fyyx8x9004frsyqrsyyva"; depends=[affy]; }; + lpNet = derive2 { name="lpNet"; version="2.28.0"; sha256="17l7k07vf21y4yw5s640xp4lh686y74sd773ij92r2spc3vk4bnm"; depends=[lpSolve]; }; + lpsymphony = derive2 { name="lpsymphony"; version="1.24.0"; sha256="0kc708ss5byzw8qh439mb4nq6hsfmz73gfamiznw3lv352brd33g"; depends=[]; }; + lumi = derive2 { name="lumi"; version="2.48.0"; sha256="06zmll5j1yymsm3byarhllrz4q1w5mzv267a9g6visn73wan8y9d"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; }; + m6Aboost = derive2 { name="m6Aboost"; version="1.2.0"; sha256="0qi7l52c3m08i4c4vj44azycb5qj99qnjmkpl5j9j13scpancnpw"; depends=[adabag Biostrings BSgenome dplyr ExperimentHub GenomicRanges IRanges rtracklayer S4Vectors]; }; + mAPKL = derive2 { name="mAPKL"; version="1.26.0"; sha256="0zzfdwjssig6km1c630jx8pl0q20c5y16z6jrms43zhbk52h2p1s"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene reactome_db]; }; + mBPCR = derive2 { name="mBPCR"; version="1.50.0"; sha256="1gdd5jj0dpimp0ix2i7dspkkggn0m5d36cvhsvyr0y5k3gq5cail"; depends=[Biobase GWASTools oligoClasses]; }; + mCSEA = derive2 { name="mCSEA"; version="1.16.0"; sha256="10g46k9ryg183dhaakmbjnpqhx4a4q9r1fjf9gfnpaycspmh7hx8"; depends=[biomaRt fgsea GenomicFeatures GenomicRanges ggplot2 Gviz Homo_sapiens IRanges limma mCSEAdata S4Vectors SummarizedExperiment]; }; + maCorrPlot = derive2 { name="maCorrPlot"; version="1.66.0"; sha256="018hc5sqp23cmfdr0k4dgx9rwl3f6f9fgab99h5hlg8rrqhy2abm"; depends=[lattice]; }; + maPredictDSC = derive2 { name="maPredictDSC"; version="1.34.0"; sha256="0rn3s0lpbrdkhbqsg94x4b2fwybrpfyys0ih2dkdscdc9h9dapyw"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; }; + maSigPro = derive2 { name="maSigPro"; version="1.68.0"; sha256="1l478qjx3cx6xc9j5gl3hv3dbrglrd2dgsifvpmw64y6a00zz09g"; depends=[Biobase MASS mclust venn]; }; + maanova = derive2 { name="maanova"; version="1.66.0"; sha256="0nh2wn8zyipm2sxxqlj0nnghybnxc2y77h031c3maab1c6kjmjiq"; depends=[Biobase]; }; + macat = derive2 { name="macat"; version="1.70.0"; sha256="1w3a0s5p93zhx8vrf0qmspisnm3gf0j1z8l38wgc86k0d9zjcbs8"; depends=[annotate Biobase]; }; + made4 = derive2 { name="made4"; version="1.70.0"; sha256="1wrv9d2mp799qzy1bsaj4w7wx12gdhfv9qvklz7z41vfz59d6bq5"; depends=[ade4 Biobase gplots RColorBrewer scatterplot3d SummarizedExperiment]; }; + maftools = derive2 { name="maftools"; version="2.12.0"; sha256="1gqfi95v4fs64n4walij0g2kds3fbbwp6lih5yakmgf6kj8fpkk6"; depends=[data_table DNAcopy RColorBrewer Rhtslib survival zlibbioc]; }; + maigesPack = derive2 { name="maigesPack"; version="1.60.0"; sha256="1imqs7jr3hnib90dclwfxx5cagf0in8zd0hz3jqw5x2xyfq2mzbp"; depends=[convert graph limma marray]; }; + makecdfenv = derive2 { name="makecdfenv"; version="1.72.0"; sha256="03lqcrbyasqychzay8iflkdfqsbsncvaxmn3g3nwr9p7l726gsik"; depends=[affy affyio Biobase zlibbioc]; }; + mapscape = derive2 { name="mapscape"; version="1.20.0"; sha256="1x9446fakxmnpkzfk541kihc95y2ilnvq7v9icky4175s70492w4"; depends=[base64enc htmlwidgets jsonlite stringr]; }; + marr = derive2 { name="marr"; version="1.6.0"; sha256="1y7s30wxk75qk2w19irs77kkg7kghs247h6n4abxvnv3wq4ygwmd"; depends=[dplyr ggplot2 magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; + marray = derive2 { name="marray"; version="1.74.0"; sha256="0awfz0akz3sylyw1jxhxgadv1rqdzvy9v11933yxkl9a8m9ngm8i"; depends=[limma]; }; + martini = derive2 { name="martini"; version="1.16.0"; sha256="043pl5r2ahnv6i7x1yd9pvs0v4xpajyxick1liivp4zrgxskpfs4"; depends=[igraph Matrix Rcpp RcppEigen snpStats]; }; + maser = derive2 { name="maser"; version="1.14.0"; sha256="0zl390lcahk9ipadi8jj25jf50dv6sxsmi54qj1nzq0q6qh0hyay"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; + maskBAD = derive2 { name="maskBAD"; version="1.40.0"; sha256="05aznwh5jmv4bd5s2gb6kjwz0zn7523qkpygdlrb5pxhh1vw1b5j"; depends=[affy gcrma]; }; + massiR = derive2 { name="massiR"; version="1.32.0"; sha256="179f1fd6xxaq7hwk6pixp3pbqmlx06mb7kin4ajwl5gch7kkr2qn"; depends=[Biobase cluster diptest gplots]; }; + matchBox = derive2 { name="matchBox"; version="1.38.0"; sha256="14jhbfvi6rwal693zbmb00pkzhpzmhib5ihr63m2y1ccmisnfqkp"; depends=[]; }; + matter = derive2 { name="matter"; version="1.22.0"; sha256="0pgi7vq1arrdhqyc34dkylbz6s4f1wx8j38ddk9yfi8m45nbhqig"; depends=[biglm BiocGenerics BiocParallel digest irlba Matrix ProtGenerics]; }; + mbOmic = derive2 { name="mbOmic"; version="1.0.0"; sha256="13lb639g3cg5k6y215r40hxn2g5i4flz0cyxgs3nfn7wf3y2cfyi"; depends=[cluster clusterSim data_table doParallel igraph psych visNetwork WGCNA]; }; + mbkmeans = derive2 { name="mbkmeans"; version="1.12.0"; sha256="1f5krzlyqljz763vkp1a50danjn78xhn35s8qqdvzrmwyx0fzphg"; depends=[beachmat benchmarkme BiocParallel ClusterR DelayedArray Matrix Rcpp RcppArmadillo Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment]; }; + mdp = derive2 { name="mdp"; version="1.16.0"; sha256="1r7w7mzq6a31rjfnpbanvvk95nai189bggw4kj8y08k8kf44hsji"; depends=[ggplot2 gridExtra]; }; + mdqc = derive2 { name="mdqc"; version="1.58.0"; sha256="132spf0yhc864f8adsavyljcnmq28p1cpw8clb0rsi1v3hrj6kn5"; depends=[cluster MASS]; }; + megadepth = derive2 { name="megadepth"; version="1.6.0"; sha256="0qq82dmd3drr2bhn51bgbc6ml40klfmmhj6wdj72n9ya6n60lwy8"; depends=[cmdfun dplyr fs GenomicRanges magrittr readr xfun]; }; + memes = derive2 { name="memes"; version="1.4.0"; sha256="02069p4izgxjwjcjjd7bd8x92sfishdrff8b0xyv1p631cxcbk5c"; depends=[Biostrings cmdfun dplyr GenomicRanges ggplot2 ggseqlogo magrittr matrixStats patchwork processx purrr readr rlang tibble tidyr universalmotif usethis xml2]; }; + meshes = derive2 { name="meshes"; version="1.22.0"; sha256="1affs7w2rwzkl2gh895ixwpvmp158acx1i4vcjg25gvak3wnwapq"; depends=[AnnotationDbi AnnotationHub DOSE enrichplot GOSemSim MeSHDbi yulab_utils]; }; + meshr = derive2 { name="meshr"; version="2.2.0"; sha256="1gaxjz5day6xipfh8dy0nxf7vxnvdy9b9hfdp83ysyhxszb36fdl"; depends=[BiocGenerics BiocStyle Category fdrtool knitr markdown MeSHDbi rmarkdown RSQLite S4Vectors]; }; + messina = derive2 { name="messina"; version="1.32.0"; sha256="1avfj9xdx1mi7f1sdl9j1xf1jhj5cibkiwwy7aa1w7chz1mz8hr4"; depends=[foreach ggplot2 plyr Rcpp survival]; }; + metaCCA = derive2 { name="metaCCA"; version="1.24.0"; sha256="1shpb8p7rxf101k8vy4nd6fllgfm3jazv87h5qk5mhfcfrja0819"; depends=[]; }; + metaMS = derive2 { name="metaMS"; version="1.32.0"; sha256="00mdv3k3qndjznxixvnb7v764wz8c6zh2jzm0h948ra3ap345fga"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; }; + metaSeq = derive2 { name="metaSeq"; version="1.36.0"; sha256="0775xgvmcaqf6pgm8651pcnlkd3adwpdzac295g1xmcwfj3r7sav"; depends=[NOISeq Rcpp snow]; }; + metabCombiner = derive2 { name="metabCombiner"; version="1.6.0"; sha256="1vnh0bqfzknpflk0j5y9jxggmc3m4irxyfbkm9jf6k5a30fnmmxb"; depends=[caret dplyr matrixStats mgcv rlang S4Vectors tidyr]; }; + metabolomicsWorkbenchR = derive2 { name="metabolomicsWorkbenchR"; version="1.6.0"; sha256="0mg7wrg8qgv11w7179nrw5w7209qjqbirm9niz2ygw1pidg0slc8"; depends=[data_table httr jsonlite MultiAssayExperiment struct SummarizedExperiment]; }; + metabomxtr = derive2 { name="metabomxtr"; version="1.30.0"; sha256="0z02b91gd71b5ksfk2ql5jldicsqh66z2yvv5yyws98xl0qqrrxw"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; }; + metagene = derive2 { name="metagene"; version="2.28.0"; sha256="131ymnrwj1ywdf78yd3fffsl6yis9dsizvjhddkqssavz2d4xy71"; depends=[BiocParallel data_table EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats muStat purrr R6 Rsamtools rtracklayer stringr]; }; + metagene2 = derive2 { name="metagene2"; version="1.12.0"; sha256="1606i1kw8i4q1m07x2yax2mfmj9knzd7jiqgzq3fn792z1yj1bsb"; depends=[BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr purrr R6 reshape2 Rsamtools rtracklayer]; }; + metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.38.0"; sha256="0v8h8ld4gzq0v90hfprw3v8j2hlac44wxyj2m6qmz0y5hml97k02"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer Wrench]; }; + metahdep = derive2 { name="metahdep"; version="1.54.0"; sha256="1y8pr873jy1ax8n8qp8kihagddk5j03pjwmxff03amnqrnxyphlv"; depends=[]; }; + metapod = derive2 { name="metapod"; version="1.4.0"; sha256="19g9c08alg4qqr710si465wlb5dy759m5d8wn91zwj24077dds7b"; depends=[Rcpp]; }; + metapone = derive2 { name="metapone"; version="1.2.0"; sha256="11q90c6qif030xffhfr8ii7vffbg2q2y6n2w8fj0x39yis6qcgf9"; depends=[BiocParallel fdrtool fgsea fields ggplot2 ggrepel markdown]; }; + metaseqR2 = derive2 { name="metaseqR2"; version="1.8.0"; sha256="0szrrdfzfylvd6rqlap58sjzp0dy3ppwbgh77xara9yw90zcxk6w"; depends=[ABSSeq baySeq Biobase BiocGenerics BiocParallel biomaRt Biostrings corrplot DESeq2 DSS DT EDASeq edgeR genefilter GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gplots harmonicmeanp heatmaply htmltools httr IRanges jsonlite lattice limma locfit log4r magrittr MASS Matrix NBPSeq pander qvalue rmarkdown rmdformats Rsamtools RSQLite rtracklayer S4Vectors stringr SummarizedExperiment survcomp VennDiagram vsn yaml zoo]; }; + metavizr = derive2 { name="metavizr"; version="1.20.0"; sha256="0sjz94a46a3frij3vx7dp4xhxn0snhrr219hg53v5ypnfbqyyxin"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; }; + methInheritSim = derive2 { name="methInheritSim"; version="1.18.0"; sha256="1g7wygaqhn1fsxaijzcil7inby25c1m85ph3xrkjn12m9lhxzzxv"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; }; + methimpute = derive2 { name="methimpute"; version="1.18.0"; sha256="1d197yf3hfnag6s2pr7vy69vmrh1v8bdxwfylb7v7xsjkhjb1nv7"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; }; + methrix = derive2 { name="methrix"; version="1.10.0"; sha256="0717pazv7yakj3b0c8p7rzb4iykyiv8vh02c4357qc3kwarkpncj"; depends=[BSgenome data_table DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array IRanges matrixStats rtracklayer SummarizedExperiment]; }; + methylCC = derive2 { name="methylCC"; version="1.10.0"; sha256="0sigx62cy47cmpirr6nqcdik5dxkn79j2xjap36jmipaa2i914s2"; depends=[Biobase bsseq bumphunter dplyr FlowSorted_Blood_450k genefilter GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IRanges magrittr minfi plyranges quadprog S4Vectors]; }; + methylGSA = derive2 { name="methylGSA"; version="1.14.0"; sha256="0lmzipk9mn3m0nv9fmfc5q53w7f1pz37cyj18n501p3p6ljqhz3r"; depends=[AnnotationDbi BiocParallel clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b4_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg shiny stringr]; }; + methylInheritance = derive2 { name="methylInheritance"; version="1.20.0"; sha256="0a0rgi396jghxpsq44ybn518r8qkz329kpnpfb0jggwc8ygg56id"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; + methylKit = derive2 { name="methylKit"; version="1.22.0"; sha256="00asjzv05avfg0rrkmfbdqd6xx8d18zi72n3b1kf9wj81z2d2a35"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust mgcv qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; + methylMnM = derive2 { name="methylMnM"; version="1.34.0"; sha256="1mxkxs06j8mi44rqnzz52dnarhh1x120qqxwkdlggl8ll36zkhrm"; depends=[edgeR statmod]; }; + methylPipe = derive2 { name="methylPipe"; version="1.30.0"; sha256="15wssa2mp3rx4ccgnmq8bb4b7h0g6vccy2i18vc45v79gq3bn3if"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; + methylSig = derive2 { name="methylSig"; version="1.8.0"; sha256="1qmd2hkinr7d4dd026r3ah0k5hrdpv1zazr8vqvx7rvxmkzz55g5"; depends=[bsseq DelayedArray DelayedMatrixStats DSS GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; + methylclock = derive2 { name="methylclock"; version="1.2.0"; sha256="00frl0d095x91j5d90569yxsd9rw7dkk3a6lsw4nms0prm3ir3jf"; depends=[Biobase devtools dplyr dynamicTreeCut ExperimentHub ggplot2 ggpmisc ggpubr gridExtra impute methylclockData minfi PerformanceAnalytics planet preprocessCore quadprog Rcpp RPMM tibble tidyr tidyverse]; }; + methylscaper = derive2 { name="methylscaper"; version="1.4.0"; sha256="19vp4hp67qvjxhbkhhhsgxa91hq5p19qsk5rjmksd5xqvgs1g4gw"; depends=[BiocParallel Biostrings data_table Rfast seqinr seriation shiny shinyFiles shinyjs SummarizedExperiment]; }; + methylumi = derive2 { name="methylumi"; version="2.42.0"; sha256="0klkinq55lfj1d4z8gkrv98849079x1l5gd15habw7jq9xxvhjww"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; }; + mfa = derive2 { name="mfa"; version="1.18.0"; sha256="0xwrwaldj78rmr1zyvz8mw9rxqdp8vr4s9k2776ijx7s71zklh8z"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; }; + mgsa = derive2 { name="mgsa"; version="1.44.0"; sha256="1g6chz14q0vpfr6x7pcv3icx3c50lppwcv231j1a3iirz30n8d6w"; depends=[gplots]; }; + miQC = derive2 { name="miQC"; version="1.4.0"; sha256="056sy6qk04gaqzcxvxpxskq7wzbgbfa8yclp2r0ry6i9qh7f8imm"; depends=[flexmix ggplot2 SingleCellExperiment]; }; + miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.20.0"; sha256="0z2rjf95maqalqbdw2v5vhwhj7fjaijp74rmmxfkciwrja25xq57"; depends=[]; }; + miRLAB = derive2 { name="miRLAB"; version="1.26.0"; sha256="0dhdzmv02vg0wj32bs0rqpax1k1m9vvyn31i95c40nbh245hfjyk"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl stringr SummarizedExperiment TCGAbiolinks]; }; + miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.24.0"; sha256="10v192wykdgbjbdbg5jc4y8zkyknqi35zx0gb39nby2ss5sh01k8"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; }; + miRNApath = derive2 { name="miRNApath"; version="1.56.0"; sha256="0993zpv9zl31r3x6ifi44syw8w6f6rcwrambvhfy7f22bifz66cl"; depends=[]; }; + miRNAtap = derive2 { name="miRNAtap"; version="1.30.0"; sha256="171c1zvc8z2hdzfkdm19w4qbi2pqsis0pjqyca4w1fr3gkrx519n"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; }; + miRSM = derive2 { name="miRSM"; version="1.14.0"; sha256="0h13ig1mvciagyifzgi2paag2ypw5kwpjn7k2a1am6fgabywp5b5"; depends=[BiBitR BicARE biclust Biobase dbscan dynamicTreeCut energy fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MatrixCorrelation MCL mclust miRspongeR NMF org_Hs_eg_db PMA ppclust Rcpp rqubic s4vd SOMbrero subspace SummarizedExperiment WGCNA]; }; + miRcomp = derive2 { name="miRcomp"; version="1.26.0"; sha256="1vf3q3132bn0qxs047yh7bi3cq5rfirmyhs2f4m05kiwc3ipmc3a"; depends=[Biobase KernSmooth miRcompData]; }; + miRmine = derive2 { name="miRmine"; version="1.18.0"; sha256="089r950x369z3a47jxcankvq0aqv6jkpjqkssfmzg5cp55hxzrhc"; depends=[SummarizedExperiment]; }; + miRspongeR = derive2 { name="miRspongeR"; version="2.0.0"; sha256="0ri5afvazrq1zq5f8ddma3qx34ifr4bd3858g14rq28fia9khl1s"; depends=[clusterProfiler corpcor doParallel DOSE foreach igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA SPONGE survival]; }; + mia = derive2 { name="mia"; version="1.4.0"; sha256="15pa9q6s9bq0xachfk122p7nz0bad438rfa0zx7zsm99kaygacmk"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS MultiAssayExperiment rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; + miaSim = derive2 { name="miaSim"; version="1.2.0"; sha256="0dc6nqmnj4phqqvs04hzcrl4w0w80j7cbmhlzdxp01rszzzr1yzw"; depends=[deSolve gtools MatrixGenerics poweRlaw S4Vectors SummarizedExperiment TreeSummarizedExperiment]; }; + miaViz = derive2 { name="miaViz"; version="1.4.0"; sha256="1bdbvbh8mkl1gk10zf11b8wqwwr1ybbd6r7dpgh4y35ayscpvdqn"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggtree mia purrr rlang S4Vectors scater SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; }; + microRNA = derive2 { name="microRNA"; version="1.54.0"; sha256="1bd38qxcd0lb44wgnns5jsn65b3mvgxfalfz7wpysv6sikmlagx4"; depends=[Biostrings]; }; + microbiome = derive2 { name="microbiome"; version="1.18.0"; sha256="1z9arkjp5xszlg07mzb4p163i74jfbd9p4gbwv5syivnpl040k12"; depends=[Biostrings compositions dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; }; + microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.10.0"; sha256="05lj8ihx8cpx2casxbpyn7n3zwia0bmj0lyn9prqial56s0zmsaj"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; }; + microbiomeExplorer = derive2 { name="microbiomeExplorer"; version="1.6.0"; sha256="0h4flm07n56biviramydxjzcrzxq5n0rr1295mjsxngnpg83kvp8"; depends=[Biobase biomformat broom car DESeq2 dplyr DT forcats heatmaply knitr limma lubridate magrittr matrixStats metagenomeSeq plotly purrr RColorBrewer readr reshape2 rlang rmarkdown shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr tibble tidyr vegan]; }; + microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.2.0"; sha256="0ldhwfpqkyn8qhnv1y8757cwiq7z6vggf1zxxj453s3i4qpbj4lb"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC purrr rlang S4Vectors tibble tidyr tidytree yaml]; }; + midasHLA = derive2 { name="midasHLA"; version="1.4.0"; sha256="1xvqrsp6rkcnr8fnjr9g62krwwshiy3xapxlmbi4bhm6605b0ccy"; depends=[assertthat broom dplyr formattable HardyWeinberg kableExtra knitr magrittr MultiAssayExperiment qdapTools rlang S4Vectors stringi SummarizedExperiment tibble]; }; + miloR = derive2 { name="miloR"; version="1.4.0"; sha256="1jz9p3grnczx0bpdw6j64x21in8zgm3qy19hmm296har2rx9m5zs"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular cowplot dplyr edgeR ggbeeswarm ggplot2 ggraph ggrepel gtools igraph irlba limma Matrix matrixStats patchwork RColorBrewer S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; + mimager = derive2 { name="mimager"; version="1.20.0"; sha256="1iy1bghz3wqn80444h9aq81mz1pw7wcx0m6bjj33qxdzcr66jbgl"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; + mina = derive2 { name="mina"; version="1.4.0"; sha256="0csvsfld45cqcsnpprviggbb4lsqjsyz00iy02zmzi6kz2djhwil"; depends=[apcluster biganalytics bigmemory foreach ggplot2 Hmisc MCL parallelDist plyr Rcpp RcppArmadillo RcppParallel reshape2 RSpectra stringr]; }; + minet = derive2 { name="minet"; version="3.54.0"; sha256="0q6jw2jqkl9qynjpzaygz45c7dmx1l5y2d8s1illpcf87siawcam"; depends=[infotheo]; }; + minfi = derive2 { name="minfi"; version="1.42.0"; sha256="0255z7w5i5k01w8wn7jkb37h3q7m7vg0szqgk76h330yydnmkrq6"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; }; + mirIntegrator = derive2 { name="mirIntegrator"; version="1.26.0"; sha256="1qgz9l4bpkgvahdm2vi0s9amakxw4zhjndc5k8d598vmwa35zjvf"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; }; + mirTarRnaSeq = derive2 { name="mirTarRnaSeq"; version="1.4.0"; sha256="10w0y3dflyyaaz8wk2p0pzv62pa2pq28aw0l5q8bvw8as0h6bpy1"; depends=[assertthat caTools corrplot data_table dplyr ggplot2 MASS pheatmap pscl purrr R_utils reshape2]; }; + missMethyl = derive2 { name="missMethyl"; version="1.30.0"; sha256="0ini4a6brxsmd1k73g7q671g0ddrbajz5gcgxk1dbny33fcixyl1"; depends=[AnnotationDbi BiasedUrn Biobase BiocGenerics GenomicRanges GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest IRanges limma methylumi minfi org_Hs_eg_db ruv S4Vectors statmod stringr SummarizedExperiment]; }; + missRows = derive2 { name="missRows"; version="1.16.0"; sha256="17hfm5jvdxb3hlv7hvq7m2a1s4bxzzxv1gakxk9nb26mcw01b29z"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; }; + mistyR = derive2 { name="mistyR"; version="1.4.0"; sha256="1b8ndp5wrzy37gspw15s8xv78nk493xwi9wvjav8k4m6cyspgr0q"; depends=[assertthat caret deldir digest distances dplyr filelock furrr ggplot2 purrr R_utils ranger readr ridge rlang rlist stringr tibble tidyr withr]; }; + mitch = derive2 { name="mitch"; version="1.8.0"; sha256="0wxgrfnih9ygpyznlr6c8sgpy8ca6k9a5jcniiwy1c43cxarvx3p"; depends=[beeswarm echarts4r GGally ggplot2 gplots gridExtra knitr MASS plyr reshape2 rmarkdown]; }; + mitoClone2 = derive2 { name="mitoClone2"; version="1.2.0"; sha256="1w5083f5g9dz3lwhfminz4l6yrn7zjysbwlib75n53grkhgwkivz"; depends=[deepSNV GenomicRanges ggplot2 pheatmap reshape2 Rhtslib S4Vectors]; }; + mixOmics = derive2 { name="mixOmics"; version="6.20.0"; sha256="0fwc2w7frj0bjijzfckkxf7ipx1z13gw7907q4zr5qfl9mh127w7"; depends=[BiocParallel corpcor dplyr ellipse ggplot2 ggrepel gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; }; + mnem = derive2 { name="mnem"; version="1.12.0"; sha256="04wc6za7vxq2sbspn69lszn6k83s7q0yfgns1052c2jqhfmxgp80"; depends=[cluster data_table e1071 flexclust ggplot2 graph lattice Linnorm matrixStats naturalsort Rcpp RcppEigen Rgraphviz snowfall tsne wesanderson]; }; + moanin = derive2 { name="moanin"; version="1.4.0"; sha256="0k3k554ncm4j3zkz67dlzdvii9m6k117gryj7lk9wrbsv1a0y7if"; depends=[ClusterR edgeR limma MASS matrixStats NMI reshape2 S4Vectors SummarizedExperiment topGO viridis zoo]; }; + mogsa = derive2 { name="mogsa"; version="1.30.0"; sha256="1yxnkwf6f356nm999b2ng54zb4cdi94pxhpwzj3f3rnr31jawvlp"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; }; + monaLisa = derive2 { name="monaLisa"; version="1.2.0"; sha256="0rqqkry54cz7id87znc59d8x49z8cwckmx30nxr6razmyl5bqmx6"; depends=[BiocGenerics BiocParallel Biostrings BSgenome circlize ComplexHeatmap GenomeInfoDb GenomicRanges glmnet IRanges S4Vectors stabs SummarizedExperiment TFBSTools vioplot XVector]; }; + monocle = derive2 { name="monocle"; version="2.24.0"; sha256="1fyqd7qhij2iyx9vdmgnx2qf0w3kwbkmg805539zrmxry8cwfldb"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree dplyr fastICA ggplot2 HSMMSingleCell igraph irlba leidenbase limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; }; + mosaics = derive2 { name="mosaics"; version="2.34.0"; sha256="196wz422a284akariq5iicknaqqcm50v63b57gsi2pzmv6qfmf5y"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; }; + mosbi = derive2 { name="mosbi"; version="1.2.0"; sha256="00l9kykr9n8ys3riw4pjqsdskf8klv9j62v0nr66z66646c1a7vp"; depends=[akmbiclust BH biclust fabia igraph isa2 QUBIC RColorBrewer Rcpp RcppParallel xml2]; }; + motifStack = derive2 { name="motifStack"; version="1.40.0"; sha256="0d2ihx73chczbv6f91n04qb372plrdv7k4qws8shyw1fmvb1rq0z"; depends=[ade4 Biostrings ggplot2 htmlwidgets TFBSTools XML]; }; + motifbreakR = derive2 { name="motifbreakR"; version="2.10.0"; sha256="0sad73jjx52qzp1fmygp6xqvaxwl5szi69f00f94i1pdyq70qhlg"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr SummarizedExperiment TFMPvalue VariantAnnotation]; }; + motifcounter = derive2 { name="motifcounter"; version="1.20.0"; sha256="06yy1ngf703ba6m9vs2jk3w1bds1s8hd4nlr3xrxfj3h7gs9dlak"; depends=[Biostrings]; }; + motifmatchr = derive2 { name="motifmatchr"; version="1.18.0"; sha256="1ssn00mxwk23zr5na0vcmxvm69i68f0ga0wqlv1nk2isg0wpv878"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; }; + mpra = derive2 { name="mpra"; version="1.18.0"; sha256="0hbsaw39k7yryl1bf45kzsnwv479minydvxc6kd0sr9qsvlhn6dc"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; }; + msImpute = derive2 { name="msImpute"; version="1.6.0"; sha256="11sqb0sj3g224fnx1kkxy9j4r5ggnp09wm902dlgkgyqj7fywlnv"; depends=[data_table dplyr FNN limma matrixStats mvtnorm pdist reticulate scran softImpute tidyr]; }; + msPurity = derive2 { name="msPurity"; version="1.22.0"; sha256="0ag1x4smva0zn377s29ff16xpwhcwb7c4yhhl1wx5fvgg9p4kn0i"; depends=[DBI dbplyr doSNOW dplyr fastcluster foreach ggplot2 magrittr mzR plyr Rcpp reshape2 RSQLite stringr]; }; + msa = derive2 { name="msa"; version="1.28.0"; sha256="0vlhpv4hh3m2wb8bfr0hn0xfycd6x80zyjf275swx46mssdqwzyp"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; }; + msgbsR = derive2 { name="msgbsR"; version="1.20.0"; sha256="00r3kfimcjy02bb0i8przj45rfkdv3ddaxfjnmi1bb6j5l5sp17b"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; }; + msmsEDA = derive2 { name="msmsEDA"; version="1.34.0"; sha256="0jnaq9ar4mnf3pfhka9hvk61p51ny9jws49xi8z29dq288b42b42"; depends=[gplots MASS MSnbase RColorBrewer]; }; + msmsTests = derive2 { name="msmsTests"; version="1.34.0"; sha256="1wzdz0p9wmr243xkmymx9fwskafkyxgmlip4sd1fy2s06px7r0xi"; depends=[edgeR msmsEDA MSnbase qvalue]; }; + msqrob2 = derive2 { name="msqrob2"; version="1.4.0"; sha256="0023mippnmmpz0r4f2h5r8g7z3yvhm6vfvkwp9ndsl1r1rpv801w"; depends=[BiocParallel codetools limma lme4 MASS Matrix purrr QFeatures SummarizedExperiment]; }; + multiClust = derive2 { name="multiClust"; version="1.26.0"; sha256="0dkj479id0kz8afmaskgn5dnfg26q47qf7gwm9qq3r9n51hbglsb"; depends=[amap cluster ctc dendextend mclust survival]; }; + multiGSEA = derive2 { name="multiGSEA"; version="1.6.0"; sha256="0nsab0ip3qnic5q15kmv42d4wf0vys5n4d539x0jq1i3mi3zpfbb"; depends=[AnnotationDbi dplyr fgsea graphite magrittr metap rappdirs rlang]; }; + multiHiCcompare = derive2 { name="multiHiCcompare"; version="1.14.0"; sha256="0mff46n168bxrg8y5dj38p2dfb0mhxf6z55fnmpfc2kahfa5bkk7"; depends=[aggregation BiocParallel data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare pbapply pheatmap qqman]; }; + multiMiR = derive2 { name="multiMiR"; version="1.18.0"; sha256="1wlr21v8brl20cphbvr5vcfy3ilamb7a1sd261i7lkdj4if8bxfx"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; }; + multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.20.0"; sha256="0cbz32ma935ci4aq83dq55ks66v7pz9rpaqfjvkd9gz3c5s88p16"; depends=[doParallel foreach SummarizedExperiment]; }; + multiSight = derive2 { name="multiSight"; version="1.4.0"; sha256="1nkx92kyyimgz2jm4dl2izir0z3qbf9fibgxr5r9j3l3zjwbbd08"; depends=[anyLib biosigner caret clusterProfiler config DESeq2 dplyr DT easyPubMed enrichplot ggnewscale golem htmltools igraph infotheo metap mixOmics networkD3 ppcor R6 ReactomePA rmarkdown rWikiPathways shiny shinydashboard stringr]; }; + multicrispr = derive2 { name="multicrispr"; version="1.6.0"; sha256="0smljmmwlkawbd4hdwgzvl25zynij4ssn4fjdhkgrmszsq79wscy"; depends=[assertive BiocGenerics Biostrings BSgenome CRISPRseek data_table GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 karyoploteR magrittr plyranges Rbowtie reticulate rtracklayer stringi tidyr tidyselect]; }; + multiscan = derive2 { name="multiscan"; version="1.56.0"; sha256="0wxpm0np4721nw2gz4db4a1wdi06pnnziyj0mwkwpsll7mgz337p"; depends=[Biobase]; }; + multtest = derive2 { name="multtest"; version="2.52.0"; sha256="037wcmwk1wvhjxgmlvnk289pkwishi1753ajkmy9x14xlmldix82"; depends=[Biobase BiocGenerics MASS survival]; }; + mumosa = derive2 { name="mumosa"; version="1.4.0"; sha256="1zrbajjfjq8mp6qq10xfrq2m2yrnda37s2aba32dwdk1gpkxx9g4"; depends=[batchelor beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats igraph IRanges Matrix metapod S4Vectors ScaledMatrix scran scuttle SingleCellExperiment SummarizedExperiment uwot]; }; + muscat = derive2 { name="muscat"; version="1.10.0"; sha256="068kzhggzihvhg3n3sdid4ha4k40rfr9bclxw2qkp69yi8jwqrxr"; depends=[BiocParallel blme ComplexHeatmap data_table DESeq2 dplyr edgeR ggplot2 glmmTMB limma lme4 lmerTest Matrix matrixStats progress purrr S4Vectors scales scater sctransform scuttle SingleCellExperiment SummarizedExperiment variancePartition viridis]; }; + muscle = derive2 { name="muscle"; version="3.38.0"; sha256="16qfnf02lmfk1cwwql5airkpv7c90lvpyjjrwicid55gqhajfzhx"; depends=[Biostrings]; }; + musicatk = derive2 { name="musicatk"; version="1.6.0"; sha256="1j3402ywcma83zxbhwlazr0s57c8b11xzg41qfxc6k2dngv3h06z"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 cluster ComplexHeatmap cowplot data_table decompTumor2Sig deconstructSigs dplyr factoextra GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra gtools IRanges maftools magrittr MASS matrixTests MCMCprecision NMF philentropy plotly rlang S4Vectors shiny shinyalert shinyBS shinybusy shinydashboard shinyjqui shinyjs sortable stringi stringr SummarizedExperiment TCGAbiolinks tibble tidyr topicmodels TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene uwot VariantAnnotation withr]; }; + mygene = derive2 { name="mygene"; version="1.32.0"; sha256="0j1cwz95hx2wl6mf6kycrw0xlsi4j6s7y4jjm87dq52dnwnh8svy"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; }; + myvariant = derive2 { name="myvariant"; version="1.26.0"; sha256="096zkpmllf58x3pz571h0y2v1klpw82xs6ffgg78hz3kayxbyqr9"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; }; + mzID = derive2 { name="mzID"; version="1.34.0"; sha256="1q1aqyya9nd494s7m3rdaf3kixipdrwbj825g40kdljwrg85y961"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; }; + mzR = derive2 { name="mzR"; version="2.30.0"; sha256="1dqa03hb42kbqfg15ksijdkyf9pr54gcl3in4mzjkld5sdi8ncds"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib]; }; + nanotatoR = derive2 { name="nanotatoR"; version="1.12.0"; sha256="13r462fn6mfqknvizfbsim9dic6zw2wznmdhzwfwiax4b1ccjkk0"; depends=[AnnotationDbi curl dplyr GenomicRanges hash httr knitr openxlsx org_Hs_eg_db rentrez rlang stringr testthat tidyverse VarfromPDB XML XML2R]; }; + ncGTW = derive2 { name="ncGTW"; version="1.10.0"; sha256="1xcwh6xd0jhiq40rvswzngddndmvday0c8rni0sq43y9ng901jnd"; depends=[BiocParallel Rcpp xcms]; }; + ncRNAtools = derive2 { name="ncRNAtools"; version="1.6.0"; sha256="10ajjvhaagvgjcjfjkgviwdrk4962gb35lknwpab9mzdvgkwjb95"; depends=[GenomicRanges ggplot2 httr IRanges S4Vectors xml2]; }; + ncdfFlow = derive2 { name="ncdfFlow"; version="2.42.0"; sha256="18ba8rygcd1ys150pk38r4w5lxwm6sl76zkd294yg847dygsqa4m"; depends=[BH Biobase BiocGenerics flowCore Rcpp RcppArmadillo Rhdf5lib zlibbioc]; }; + ndexr = derive2 { name="ndexr"; version="1.18.0"; sha256="0l6bfzkrd8n719fqll4v202dm19hgdn9l8n56l8bykfsa3sff0lj"; depends=[httr igraph jsonlite plyr RCX tidyr]; }; + nearBynding = derive2 { name="nearBynding"; version="1.6.0"; sha256="0gf0gm9aqxxhblhfjab61j0bmyh2lij9bcpk2jvb55gmdaqc1vxg"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicRanges ggplot2 gplots magrittr matrixStats plyranges R_utils rlang Rsamtools rtracklayer S4Vectors transport TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + nempi = derive2 { name="nempi"; version="1.4.0"; sha256="1hl1znxwdhsixv1cxq04nzsj982hjhpd5jc3pl6xdcivr0jbb405"; depends=[e1071 epiNEM matrixStats mnem naturalsort nnet randomForest]; }; + netDx = derive2 { name="netDx"; version="1.8.0"; sha256="0v6760mghq6ynmzfll16gc2q7c4l7gqlxilx6np6aha2qcwgr4cl"; depends=[bigmemory BiocFileCache combinat doParallel foreach GenomeInfoDb GenomicRanges ggplot2 glmnet httr igraph IRanges MultiAssayExperiment plotrix pracma rappdirs RColorBrewer reshape2 ROCR Rtsne S4Vectors]; }; + netOmics = derive2 { name="netOmics"; version="1.2.0"; sha256="11yjlp1siq80492sywpkwghcsnqmwvmx0rbw9wm58j61qdlywcb5"; depends=[AnnotationDbi dplyr ggplot2 GO_db gprofiler2 igraph magrittr minet purrr RandomWalkRestartMH tibble tidyr]; }; + netSmooth = derive2 { name="netSmooth"; version="1.16.0"; sha256="0jzid8svq21i5kbc3c908dqmf0i4mlsnfa4bq7avp9ynv195nc4q"; depends=[cluster clusterExperiment data_table DelayedArray entropy HDF5Array Matrix scater SingleCellExperiment SummarizedExperiment]; }; + netZooR = derive2 { name="netZooR"; version="1.0.0"; sha256="03a1i508hm8i86nnlj1i4hz83fz1krp3qfbiyv2yhrdq3f5ra1yr"; depends=[AnnotationDbi assertthat Biobase data_table doParallel dplyr foreach ggdendro ggplot2 GO_db GOstats gplots igraph MASS Matrix matrixStats nnet org_Hs_eg_db pandaR penalized RCy3 reshape reshape2 reticulate STRINGdb tidyr vegan viridisLite yarn]; }; + netbiov = derive2 { name="netbiov"; version="1.30.0"; sha256="1c63ywyp7zcszrrkyx3q4xnkzij17km675825gcmfgk3h0g96lx7"; depends=[igraph]; }; + netboost = derive2 { name="netboost"; version="2.4.0"; sha256="07fk9hpjx8ghfjs5swcd3dckghk0slbbiawhwrk4zw10ysvjnqnm"; depends=[colorspace dynamicTreeCut impute R_utils Rcpp RcppParallel WGCNA]; }; + netboxr = derive2 { name="netboxr"; version="1.7.1"; sha256="06pc0qw275r1ksj07hvkfvcvxl9dg539wja07j7lbqvnp6hzl0xd"; depends=[clusterProfiler data_table DT gplots igraph jsonlite plyr RColorBrewer]; }; + nethet = derive2 { name="nethet"; version="1.28.0"; sha256="1c6is3w1saw5i2akmxf6272qlbxpf40ayfh19jialmmqsdhik01z"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network]; }; + netprioR = derive2 { name="netprioR"; version="1.22.0"; sha256="0wbhcr0qkcsnakfpx49hkjhwbmrc9n76rbs75pc3da4z9wv89qg3"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; }; + netresponse = derive2 { name="netresponse"; version="1.56.0"; sha256="0ciw89zvahyirjnpc69rdipxzlil6fjd5qmk61fdmr1scvvpv2iv"; depends=[BiocStyle dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz rmarkdown]; }; + networkBMA = derive2 { name="networkBMA"; version="2.35.0"; sha256="0xa0b977apbr6p9kqk38582af635kp99csj32bsn2bf8pjsmd4d2"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; }; + ngsReports = derive2 { name="ngsReports"; version="1.12.0"; sha256="0xcx1wrdzg4ya42cr8nhgpjkx5d88nqlpjnj6x020v3l0amcqyyh"; depends=[BiocGenerics Biostrings checkmate dplyr DT forcats ggdendro ggplot2 lifecycle lubridate pander plotly readr reshape2 rmarkdown scales stringr tibble tidyr tidyselect zoo]; }; + nnNorm = derive2 { name="nnNorm"; version="2.60.0"; sha256="09xr73xpfzj0w9wx23bqzkcnxlvgc50lazbfpd5phl0ravsl5spl"; depends=[marray nnet]; }; + nnSVG = derive2 { name="nnSVG"; version="1.0.0"; sha256="1sgza1pb3sbz68br0y958qgvdxm684r1ickv9q6fgz8bdp6hdhz1"; depends=[BiocParallel BRISC Matrix matrixStats SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; + nondetects = derive2 { name="nondetects"; version="2.26.0"; sha256="1y31pzsihqmlhprdgl9xwspbfj2k9zgp15d905v6y9zjzjdxfdhf"; depends=[arm Biobase HTqPCR limma mvtnorm]; }; + normalize450K = derive2 { name="normalize450K"; version="1.24.0"; sha256="03cmxljvcfmzkvsrzhc4si17g68fcb8877pzf6960cvbhv00d4ys"; depends=[Biobase illuminaio quadprog]; }; + normr = derive2 { name="normr"; version="1.22.0"; sha256="1v1x54k8kphq3xrnv5m2ya4viyg22msgviv6hg6qg8fb4hqp9ich"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; }; + npGSEA = derive2 { name="npGSEA"; version="1.32.0"; sha256="05l9dd4w013k9m6yckidal2q2b991nkir78543rzjh81x9kqz229"; depends=[Biobase BiocGenerics GSEABase]; }; + nuCpos = derive2 { name="nuCpos"; version="1.14.0"; sha256="1lx3d1iadhah35hc30wmmki8yxqqw5qs0h0h1wjd6qyg0hyxskq7"; depends=[]; }; + nucleR = derive2 { name="nucleR"; version="2.28.0"; sha256="1878hzdffsz4hsghk9y9m8bdqcy75z5hipj264dawvp89lm57sfg"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; }; + nucleoSim = derive2 { name="nucleoSim"; version="1.24.0"; sha256="0s81vjca93afz9ysjz16pkdsn7x206lr7mbj9lnrllffhy4n4n59"; depends=[IRanges S4Vectors]; }; + nullranges = derive2 { name="nullranges"; version="1.2.0"; sha256="00zx8xq8hz2pz3x6x5lmq78nvrzpzmkjwm364d9qswjvcxdgmcvb"; depends=[data_table GenomeInfoDb GenomicRanges ggplot2 ggridges InteractionSet IRanges ks plyranges progress rlang S4Vectors scales speedglm]; }; + occugene = derive2 { name="occugene"; version="1.56.0"; sha256="1cbi3h0m48vdy1jd5zqmwvrxgc7dn9jxadg1drc3sfbba5y85bsh"; depends=[]; }; + odseq = derive2 { name="odseq"; version="1.24.0"; sha256="1j8fv35z3wlc6y5ms34fd0z1r7w9hkr6fzb5rxx2ylc6nfgcsymv"; depends=[kebabs mclust msa]; }; + oligo = derive2 { name="oligo"; version="1.60.0"; sha256="0y7j96rafm9b85sxq2483i73685i3j67lk33fn8nfcav6lmsv5vy"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; }; + oligoClasses = derive2 { name="oligoClasses"; version="1.58.0"; sha256="1m4x50gl1fm5waa531v7ml0q229q65qn9cgiwnvjg721fvra7mdk"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; }; + omicRexposome = derive2 { name="omicRexposome"; version="1.18.0"; sha256="0gpd1hqniz6m0q1r6ijbr9kj7j9k4lzxqw9r906hlrh3jkwdyw21"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; }; + omicade4 = derive2 { name="omicade4"; version="1.36.0"; sha256="1l7w3sczsimg640klq8navgdcwjj090wjqd40n4mw76pny2xj2lj"; depends=[ade4 Biobase made4]; }; + omicplotR = derive2 { name="omicplotR"; version="1.16.0"; sha256="0sqh8nympgrig01x4j302xsya10sbrpn75sjwy16srxxiagkrlzk"; depends=[ALDEx2 compositions DT jsonlite knitr matrixStats rmarkdown shiny vegan zCompositions]; }; + omicsPrint = derive2 { name="omicsPrint"; version="1.16.0"; sha256="08gv2qzv7a1jsyqqm802w3awymnnyyy84ic56wzhcdimhqgs0an3"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; }; + omicsViewer = derive2 { name="omicsViewer"; version="1.0.0"; sha256="1631hqj6r0ar7ymrlb4phsnw9d3x4q20p4702qlfyw6a67drib86"; depends=[beeswarm Biobase curl DT fastmatch fgsea flatxml ggplot2 ggseqlogo htmlwidgets httr Matrix matrixStats networkD3 openxlsx plotly psych RColorBrewer reshape2 RSQLite S4Vectors shiny shinybusy shinycssloaders shinyjs shinythemes shinyWidgets stringr SummarizedExperiment survival survminer]; }; + ompBAM = derive2 { name="ompBAM"; version="1.0.0"; sha256="0pjkp6vhnnbdflgg15f9cvlx8cdmbd3y09d7i1dk421z28jlwzrs"; depends=[Rcpp zlibbioc]; }; + oncomix = derive2 { name="oncomix"; version="1.18.0"; sha256="0yj0p2vkph8qy1hhfv8nc15ac0z506xazzsmq6a7pvz5yqw7hxqc"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; }; + oneSENSE = derive2 { name="oneSENSE"; version="1.18.0"; sha256="189zhz5glffh0q368mj8z7q7kvdpx2yl7xvwz5q20ckqj3xyyf10"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; }; + onlineFDR = derive2 { name="onlineFDR"; version="2.4.0"; sha256="0l2sc6kzwg1y68b4hh8xq075kkb1iz6l5ns417z36hwzb5sl0jxr"; depends=[dplyr ggplot2 progress Rcpp RcppProgress tidyr]; }; + ontoProc = derive2 { name="ontoProc"; version="1.18.0"; sha256="01wc7yk44zkylkx1blh7a299696pvf2smya728v3f8axvk8n5hyp"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache dplyr DT graph igraph magrittr ontologyIndex ontologyPlot Rgraphviz S4Vectors shiny]; }; + openCyto = derive2 { name="openCyto"; version="2.8.0"; sha256="1nz5fra0jf70jwyfbcz5ksnz5xb62vfnfwfasr0zwwvjvmmvrs1y"; depends=[Biobase BiocGenerics clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; }; + openPrimeR = derive2 { name="openPrimeR"; version="1.18.0"; sha256="1lxs08x6xw80rw6q15qda1668yil53pwcwcm1kryibjx78rng3mf"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; }; + openPrimeRui = derive2 { name="openPrimeRui"; version="1.18.0"; sha256="1gkqka5i3advring4ajhkad183j27lik605hhnww0fm8n7qmgz7l"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; }; + oposSOM = derive2 { name="oposSOM"; version="2.14.0"; sha256="0fglnzab8p2za8d3d3cpia2rai64jyra1yazkfk718bin6nx2bpg"; depends=[ape Biobase biomaRt fastICA fdrtool graph igraph pixmap png Rcpp RcppParallel RCurl scatterplot3d tsne XML]; }; + oppar = derive2 { name="oppar"; version="1.24.0"; sha256="0p5r98v5f969hllm0ywqfi67gaxlgxba506qvlq2rd870bv5bgmk"; depends=[Biobase GSEABase GSVA]; }; + oppti = derive2 { name="oppti"; version="1.10.0"; sha256="0rwgyq4qx4bgz1rl6z93yiadpslnj8v1aj84pdhjdd7gcn0xyc4g"; depends=[devtools ggplot2 knitr limma parallelDist pheatmap RColorBrewer reshape]; }; + optimalFlow = derive2 { name="optimalFlow"; version="1.8.0"; sha256="0h6a1cv7gc9pbahn3jpxayxqn9gl9qdygvmppz0za4bmi7jsc03i"; depends=[dbscan doParallel dplyr ellipse flowMeans foreach optimalFlowData randomForest Rfast rgl rlang robustbase transport]; }; + orthogene = derive2 { name="orthogene"; version="1.2.0"; sha256="1azq3l8cjzfa3n3hrmww6ms4ala6w4qscxrr2vf7c1lwr47r86v3"; depends=[babelgene data_table DelayedArray DelayedMatrixStats dplyr ggplot2 ggpubr ggtree gprofiler2 grr homologene jsonlite Matrix Matrix_utils patchwork repmis]; }; + pRoloc = derive2 { name="pRoloc"; version="1.36.0"; sha256="11nznxcw06v9z5l9zlkqqpqzb5iaabvfbww0d0y1blgzhf06mfpz"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; }; + pRolocGUI = derive2 { name="pRolocGUI"; version="2.6.0"; sha256="0j48nky1gl1jggpikq60zxcnd4l3ka7l7wwsg0mn3i99ak1x55xh"; depends=[Biobase BiocGenerics colorspace colourpicker dplyr DT ggplot2 MSnbase pRoloc scales shiny shinydashboard shinydashboardPlus shinyhelper shinyjs shinyWidgets]; }; + packFinder = derive2 { name="packFinder"; version="1.8.0"; sha256="0swvwh8wx871yppzi5mail4hrm8cvfyic4yqnwr32sihipsr9sgq"; depends=[ape Biostrings GenomicRanges IRanges kmer S4Vectors]; }; + padma = derive2 { name="padma"; version="1.6.0"; sha256="1rp0l035dcqb3vr6rh2q8x9169abcv02g71a6gvbzrs6zipp1183"; depends=[FactoMineR MultiAssayExperiment S4Vectors SummarizedExperiment]; }; + pageRank = derive2 { name="pageRank"; version="1.6.0"; sha256="0ad9c6zrfajlkw0d1xhk2b4lggaj37iw92n2lj9qmw9jcdbpqlnq"; depends=[GenomicRanges igraph motifmatchr]; }; + paircompviz = derive2 { name="paircompviz"; version="1.34.0"; sha256="00fqwm8f2aw8lif3hpf7lh68b1gyffi18c97q2y4nh97zf94da0i"; depends=[Rgraphviz]; }; + pairkat = derive2 { name="pairkat"; version="1.2.0"; sha256="05ci3mbbfri30xxhi7ssj1wc35qbl1q5aaybqvfk9s8l14ax0izy"; depends=[CompQuadForm data_table igraph KEGGREST magrittr SummarizedExperiment tibble]; }; + pandaR = derive2 { name="pandaR"; version="1.28.0"; sha256="1l0iz2pyw728vi6smc1gk1sxjczfgdfv805fdc8bby0qapl7v85r"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; }; + panelcn_mops = derive2 { name="panelcn.mops"; version="1.18.0"; sha256="1pi6xva3s7avcdayqhh5xyrv00dv2gkv4pwxp3f5k8biz2i5qn0x"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; }; + panp = derive2 { name="panp"; version="1.66.0"; sha256="0bvl3jrsqvf0955mjzqn4nzj3anhhhhn6id57icsmjq15gviajzl"; depends=[affy Biobase]; }; + pareg = derive2 { name="pareg"; version="1.0.0"; sha256="1kzs349cbz81ba1jm7vjqypn1041l5p8qrg9r596b9d902hiqfjg"; depends=[DOSE dplyr furrr ggplot2 ggraph glue igraph keras magrittr Matrix matrixLaplacian nloptr progress proxy purrr reticulate rlang shadowtext stringr tensorflow tfprobability tibble tidygraph tidyr]; }; + parglms = derive2 { name="parglms"; version="1.28.0"; sha256="0h9bd3rv2cbn8rfv4d1c2ah0pp7bsiziyj7zwslgwa2ycqrarpqa"; depends=[BatchJobs BiocGenerics doParallel foreach]; }; + parody = derive2 { name="parody"; version="1.54.0"; sha256="0g974q140byiniixgsq717vz66wrsfwhrv76w0c4by23kvmkyrz7"; depends=[]; }; + pathRender = derive2 { name="pathRender"; version="1.64.0"; sha256="07mad39y9l4c1mb66psi5d9vqd7lwkin3psrszqhl5kd6fi6z3in"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; }; + pathVar = derive2 { name="pathVar"; version="1.26.0"; sha256="1q7dryn1h98cfr03xc7bm84rc0xsdhpc1mizd169cyck0jj70siq"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; }; + pathifier = derive2 { name="pathifier"; version="1.34.0"; sha256="0aanvd9sgicnbl87wwfr7sdh6bjy6knhcx1x1d5g34pqbzkwfzwq"; depends=[princurve R_oo]; }; + pathview = derive2 { name="pathview"; version="1.36.0"; sha256="1472k107f21cflbx2fip92g8gl9wlwxgwfvgvl73ma0y0jzs0qdq"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; }; + pathwayPCA = derive2 { name="pathwayPCA"; version="1.12.0"; sha256="13ny1z0i7zywpk8lk8qpbj2zpgznq3l4q1vyg1r0rc265p8c3031"; depends=[lars survival]; }; + paxtoolsr = derive2 { name="paxtoolsr"; version="1.30.0"; sha256="0kzszgk69078kg5v6blnr1bbhhin8rx62s40xx1abm6pm0k87kli"; depends=[httr igraph jsonlite plyr R_utils rappdirs readr rJava rjson XML]; }; + pcaExplorer = derive2 { name="pcaExplorer"; version="2.22.0"; sha256="0xkafpi6y5n8hljdaj183hd5z4ik7lpbklg2cbx1hwfz4n4hh1bl"; depends=[AnnotationDbi base64enc biomaRt DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats heatmaply IRanges knitr limma NMF pheatmap plotly plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; }; + pcaMethods = derive2 { name="pcaMethods"; version="1.88.0"; sha256="1087sl7y707zld7zpf3ly51gnmdp93vn90dwa5440v7qawvg2h9b"; depends=[Biobase BiocGenerics MASS Rcpp]; }; + pcxn = derive2 { name="pcxn"; version="2.18.0"; sha256="08w3b8ngbrv7nhc6ybmzwkahk89ixxq67f9zjwinajw3svfi7yw8"; depends=[pcxnData pheatmap]; }; + pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.60.0"; sha256="14lhkhkgslwls86p7y04k0vjg5yqd2js9j4hnvkn89zydv7r29r0"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; }; + peakPantheR = derive2 { name="peakPantheR"; version="1.10.0"; sha256="0ais6q8vl16x9prf8xsairrhjaaq246zw5n90g2zmh0nnb6674hw"; depends=[bslib doParallel DT foreach ggplot2 gridExtra minpack_lm MSnbase mzR pracma scales shiny shinycssloaders stringr XML]; }; + peco = derive2 { name="peco"; version="1.8.0"; sha256="12mq87cyndl7zgwn155vbd8lh3yil9l6slmyjin971hlw53qvikn"; depends=[assertthat circular conicfit doParallel foreach genlasso scater SingleCellExperiment SummarizedExperiment]; }; + pengls = derive2 { name="pengls"; version="1.2.0"; sha256="0zk8f9yzxc1mnyyv1g2rfjlcc0hz2dgavjrlgfqajzss4m5dilqs"; depends=[BiocParallel glmnet nlme]; }; + pepStat = derive2 { name="pepStat"; version="1.30.0"; sha256="1fj32n61zxm7ls7qk0ncpmm1g2xpf60i0310axniyxlxcbyds0b3"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; + pepXMLTab = derive2 { name="pepXMLTab"; version="1.30.0"; sha256="11fnm35cbnwy9l09mci9846xcv2mxvknv9hb1bs1i8381q8ysvws"; depends=[XML]; }; + periodicDNA = derive2 { name="periodicDNA"; version="1.6.0"; sha256="0ak5i5pqhjyz99lhbiqxjymsars3pajfwd2snzlyc7xd1fjxg06s"; depends=[BiocParallel Biostrings BSgenome cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr rtracklayer S4Vectors zoo]; }; + pgca = derive2 { name="pgca"; version="1.20.0"; sha256="1mrn054flab2v18za40fhfxn691g3gq93p1ciyxfakbyb89ryi5x"; depends=[]; }; + phantasus = derive2 { name="phantasus"; version="1.15.8"; sha256="071s6mhm8bpbcnhbrfnxcha8pvf5i03ak09v56hkkgi9a5iwnwjg"; depends=[AnnotationDbi assertthat Biobase ccaPP curl data_table DESeq2 fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; + phenoTest = derive2 { name="phenoTest"; version="1.44.0"; sha256="0dm3h7ax83j3izcij7cdf8wg9cl4409vwnmzfbymf33y2l2z8csx"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach limma mgcv survival xtable]; }; + phenopath = derive2 { name="phenopath"; version="1.20.0"; sha256="114v90my05q89bgyjgl2ix62h3l4xcy96j2fncmpa89l7zax9fr2"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; + philr = derive2 { name="philr"; version="1.22.0"; sha256="1mj6mzl74dbpdhc5laiax5h20i0rh9n2rkip7vgwr5qc26a16kcw"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; + phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.20.0"; sha256="0mcgxwg3igji0a3nwhjby10yy6p1hlh1pfcx973vi7fy3w5inm19"; depends=[matrixStats plyr]; }; + phyloseq = derive2 { name="phyloseq"; version="1.40.0"; sha256="0hcyv4ziyaw74mc9vf7bad3q9izi9p0whg3hspbs6w8b3hp34y2k"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; }; + piano = derive2 { name="piano"; version="2.12.0"; sha256="04ipkyj3y6gy1x5q4i6khwwca36q8m2vqgxpn8lcidp0b0i9klkg"; depends=[Biobase BiocGenerics DT fgsea gplots htmlwidgets igraph marray relations scales shiny shinydashboard shinyjs visNetwork]; }; + pickgene = derive2 { name="pickgene"; version="1.68.0"; sha256="1zdiaw0n72sc98qz5fl5xq34s1sqjmp45p2m8m882cv17d81fdgm"; depends=[MASS]; }; + pipeComp = derive2 { name="pipeComp"; version="1.6.0"; sha256="0m3kp996x248jvcy3d2d8hfw53vzj24k1jkcdw02lcc8p0rcy0zm"; depends=[aricode BiocParallel circlize clue cluster ComplexHeatmap cowplot dplyr ggplot2 intrinsicDimension knitr Matrix matrixStats randomcoloR RColorBrewer reshape2 Rtsne S4Vectors scales scater scran Seurat SingleCellExperiment SummarizedExperiment uwot viridisLite]; }; + pipeFrame = derive2 { name="pipeFrame"; version="1.12.0"; sha256="13xxkk7ja7f7kzn5pxcikdczc5y8f42l4xx3qbw837jxl5sxk2fy"; depends=[Biostrings BSgenome digest GenomeInfoDb magrittr rmarkdown visNetwork]; }; + pkgDepTools = derive2 { name="pkgDepTools"; version="1.62.0"; sha256="1fpdlvivarilkbd5zanqpss1irr3a1y10qqj2k8zmh3rxw6gd99g"; depends=[graph RBGL]; }; + planet = derive2 { name="planet"; version="1.4.0"; sha256="0gqcflfn3l4dia6bi9jbadmhhp1flh3fss8glnlqxwgh4znlgj2x"; depends=[dplyr magrittr tibble]; }; + plethy = derive2 { name="plethy"; version="1.34.0"; sha256="1lj31iizb042zxqr5hma25p0clwc5d034bdbrwcpsfi6gq50ca42"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; }; + plgem = derive2 { name="plgem"; version="1.68.0"; sha256="07zxflxcay17hxjw3wh5kfdwl2x8537csb18p1qzmyrkvscnja77"; depends=[Biobase MASS]; }; + plier = derive2 { name="plier"; version="1.66.0"; sha256="0zs053ih93klbdwz4gg8m5kizn9ifdccvgm21ddphv9jyn0sic4b"; depends=[affy Biobase]; }; + plotGrouper = derive2 { name="plotGrouper"; version="1.14.0"; sha256="1v8yjpavyz6gkm9wpv1ja3ifgdm25x7yw3rsb40py3bfz6wq50pr"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; + plotgardener = derive2 { name="plotgardener"; version="1.2.0"; sha256="0vz9x5lcpcczf130ryk0pw02xnrb9rsagmhx0x3pry7mz8xz3sdj"; depends=[curl data_table dplyr ggplotify IRanges plyranges purrr RColorBrewer Rcpp rlang strawr]; }; + plyranges = derive2 { name="plyranges"; version="1.16.0"; sha256="16af5v9k40sc152bgywkhzxbwx3gyljmn4whx0idfr58q5lafk90"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; + pmm = derive2 { name="pmm"; version="1.28.0"; sha256="1s2b4n91chjsplcmk8zj1sc8fm834vq1rygj10fvap9cnacc53pr"; depends=[lme4]; }; + pmp = derive2 { name="pmp"; version="1.8.0"; sha256="12bfbcvsxvlrv4znb7sy5ysmqr3rgpf24axcd5clhbw4xxsasak9"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; + podkat = derive2 { name="podkat"; version="1.28.0"; sha256="1fv0xpir46hfm85lcp3r0wwwf95w3frxn869m41qqqd20l45dbv7"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rhtslib Rsamtools]; }; + pogos = derive2 { name="pogos"; version="1.16.0"; sha256="1yqz6zayjpgbjfv2b2xy1hrriyjp9p62sgz0m3wzc036ki6hdgj5"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; }; + polyester = derive2 { name="polyester"; version="1.32.0"; sha256="1l25aggq6yx00rcbqqmpn9w48lj28z1m4s52ngmd2yxvr1kfwz7y"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; }; + powerTCR = derive2 { name="powerTCR"; version="1.16.0"; sha256="0wdaxhhsr0zap3mmcfsky5qxka38q86qm3fwdpxq3dprq87i4gyi"; depends=[cubature doParallel evmix foreach magrittr purrr truncdist vegan VGAM]; }; + ppcseq = derive2 { name="ppcseq"; version="1.4.0"; sha256="0m5cw7xjzway21ys1ihyp6s1ni05hxzswhixzig5w375m4qq32zp"; depends=[benchmarkme BH dplyr edgeR foreach furrr future ggplot2 lifecycle magrittr purrr Rcpp RcppEigen rlang rstan rstantools StanHeaders tibble tidybayes tidyr]; }; + ppiStats = derive2 { name="ppiStats"; version="1.62.0"; sha256="0w5gkfah2y50x4wj5fn8i6ycx1x013mn9w4bs8r2vfqabpws1a81"; depends=[Biobase Category graph lattice RColorBrewer]; }; + pqsfinder = derive2 { name="pqsfinder"; version="2.12.0"; sha256="1mzl1n5vag59m0i30p839dba400pl41kzqk6mqlysysrbhy55mq4"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; }; + pram = derive2 { name="pram"; version="1.12.0"; sha256="1shri7kc33wfliv6bjgcx9xxgblz6kg791r2zpbmj0mc1dwzvqz4"; depends=[BiocGenerics BiocParallel data_table GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; + prebs = derive2 { name="prebs"; version="1.36.0"; sha256="0v72wxmv790bbwx5fblp90a3rxqg7g19ryv6xbi23753jd4l6290"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; }; + preciseTAD = derive2 { name="preciseTAD"; version="1.6.0"; sha256="0zj90y364yfdg6sws32b71n9wdjbw5rhygihcimnwszfhqkfm7hg"; depends=[caret cluster dbscan doSNOW e1071 foreach GenomicRanges gtools IRanges ModelMetrics pbapply pROC PRROC randomForest rCGH S4Vectors]; }; + preprocessCore = derive2 { name="preprocessCore"; version="1.58.0"; sha256="1sqpp00hhv6gypflrjw8qpqyqgdcp29m86gmi1di1574x8casdkf"; depends=[]; }; + primirTSS = derive2 { name="primirTSS"; version="1.14.0"; sha256="19m448jiww7z5jf54k625fqljh34nnaxrs9pz2by24kb1iwq9bml"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; }; + proActiv = derive2 { name="proActiv"; version="1.6.0"; sha256="1m3rcd6qffd27kdrac5zvriy04p22pky2ldb70069vlhykh979hm"; depends=[AnnotationDbi BiocParallel data_table DESeq2 dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges rlang S4Vectors scales SummarizedExperiment tibble]; }; + proBAMr = derive2 { name="proBAMr"; version="1.30.0"; sha256="06k52jjii9mmy6nyq49f42j8z15snhq58zjj35piyj9vb8x5nl3n"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; }; + proBatch = derive2 { name="proBatch"; version="1.11.0"; sha256="1296zlqpkf6pcdxn42sfb8sr8yml7fx97i6iw3ivq98fbgikrad6"; depends=[Biobase corrplot data_table dplyr ggfortify ggplot2 lazyeval lubridate magrittr pheatmap preprocessCore purrr pvca RColorBrewer reshape2 rlang scales sva tibble tidyr viridis wesanderson WGCNA]; }; + proDA = derive2 { name="proDA"; version="1.10.0"; sha256="13an4g1m671if0jvnxvcbvidlaycfyva6bipairjakzvisc3v7df"; depends=[BiocGenerics extraDistr S4Vectors SummarizedExperiment]; }; + proFIA = derive2 { name="proFIA"; version="1.22.0"; sha256="0cprrdb3mqx9vfqfhx64s0ix22piqy1g2vqjwzxsh5330rg9x4jd"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; }; + procoil = derive2 { name="procoil"; version="2.24.0"; sha256="1yw59sjljwa4minnlf8w2cbasyf0xyfm3y7r7nw2cl9pkil7q8lh"; depends=[Biostrings kebabs S4Vectors]; }; + profileScoreDist = derive2 { name="profileScoreDist"; version="1.24.0"; sha256="04kvrw09zacvl9cxycw691vhijmhm9whb56iw19jh9w6910bd8g6"; depends=[BiocGenerics Rcpp]; }; + profileplyr = derive2 { name="profileplyr"; version="1.12.0"; sha256="0i4nrq3n122hz6y6fxnx9crv4k9dk1q75b0f38lclblm897vxhnw"; depends=[BiocGenerics BiocParallel ChIPseeker circlize ComplexHeatmap dplyr EnrichedHeatmap GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges magrittr org_Hs_eg_db org_Mm_eg_db pheatmap R_utils rGREAT rjson rlang Rsamtools rtracklayer S4Vectors soGGi SummarizedExperiment tidyr tiff TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene]; }; + progeny = derive2 { name="progeny"; version="1.18.0"; sha256="1rhy2l2yf9ndxlvff8756s6n8qyi42nz7a75lgygj5aqqckkj21b"; depends=[Biobase decoupleR dplyr ggplot2 ggrepel gridExtra reshape2 tidyr]; }; + projectR = derive2 { name="projectR"; version="1.12.0"; sha256="06xnygqzs4pbdilrm482dxv700bwwy94fkcqgzg1y93bg2pc9jcx"; depends=[cluster CoGAPS dplyr ggalluvial ggplot2 limma NMF RColorBrewer reshape2 ROCR scales viridis]; }; + protGear = derive2 { name="protGear"; version="1.0.0"; sha256="19kzjlm7d9yc8zr38cda9c8ijrakiv795av59gvi2h6hkbawh3z1"; depends=[Biobase data_table dplyr factoextra FactoMineR flexdashboard genefilter GGally ggplot2 ggpubr gtools htmltools kableExtra Kendall knitr limma magrittr MASS pheatmap plotly plyr purrr readr remotes rlang rmarkdown shiny shinydashboard styler tibble tidyr vsn]; }; + proteinProfiles = derive2 { name="proteinProfiles"; version="1.36.0"; sha256="0d229pa4drqpmx8557rc9ic4hck6p0b4kjrvcql97zxbawd42p9l"; depends=[]; }; + psichomics = derive2 { name="psichomics"; version="1.22.0"; sha256="1xr8i1hffhpc8hrwbhc8m022jv63bn6rljwb34hkxf7jl6i6g6hq"; depends=[AnnotationDbi AnnotationHub BiocFileCache cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma pairsD3 plyr purrr R_utils Rcpp recount reshape2 Rfast shiny shinyBS shinyjs stringr SummarizedExperiment survival XML xtable]; }; + psygenet2r = derive2 { name="psygenet2r"; version="1.28.0"; sha256="1yak827sma4l90k7hvsknkiacbvz3q4rfbxc3v5m5hk0xdwh26fi"; depends=[BgeeDB Biobase biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; }; + ptairMS = derive2 { name="ptairMS"; version="1.4.0"; sha256="1353a271ri5zblics50bkvmchnc1f2n0j4qnsvmshjgc24fsrz76"; depends=[Biobase bit64 chron data_table doParallel DT enviPat foreach ggplot2 ggpubr gridExtra Hmisc minpack_lm MSnbase plotly Rcpp rhdf5 rlang scales shiny shinyscreenshot signal]; }; + pulsedSilac = derive2 { name="pulsedSilac"; version="1.9.1"; sha256="1zb8xzs9h4rcrnmsfvrwb1qixn3jbnzxdwqgdrb82hgmxabmajlb"; depends=[cowplot ggplot2 ggridges MuMIn R_utils robustbase S4Vectors SummarizedExperiment UpSetR]; }; + puma = derive2 { name="puma"; version="3.38.0"; sha256="0nvyn5j3j5054ifwc9mngf37hq40qdhrhfih195qalpkj6il2b1b"; depends=[affy affyio Biobase mclust oligo oligoClasses]; }; + pvac = derive2 { name="pvac"; version="1.44.0"; sha256="0vmfnc5cb1xxbhjaxz8rdvdx2w3dg0i8jnc4i9wa67x6rb3g19ba"; depends=[affy Biobase]; }; + pvca = derive2 { name="pvca"; version="1.36.0"; sha256="1356hc5zvfhkn7xgnxs1qm6w0fadb1nqsclgc5mlr15ckf1pr8gr"; depends=[Biobase lme4 Matrix vsn]; }; + pwOmics = derive2 { name="pwOmics"; version="1.28.0"; sha256="0viy8k7dcx1cgq23mq2779d8hfn4wffq4xi483fjizihs11hr6yy"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; }; + pwrEWAS = derive2 { name="pwrEWAS"; version="1.10.0"; sha256="1xfb9sqz6r21qgdqfs2jzlgky9myzdcqpv4vavh2g33bbnqbkknf"; depends=[abind BiocManager CpGassoc doParallel doSNOW foreach genefilter ggplot2 limma pwrEWAS_data shiny shinyBS shinyWidgets truncnorm]; }; + qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="1.14.0"; sha256="18ma0calaywm4jdlr2v1vzhr4xiswqih9r72ggj9h0vvwwc7gfjw"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer readr rlang scales stringr tibble tidyr tidyselect]; }; + qckitfastq = derive2 { name="qckitfastq"; version="1.12.0"; sha256="1xj882jm4fi7cy8lixzyliaxa617k7wx70bjkzwhd5k9hww28ld1"; depends=[data_table dplyr ggplot2 magrittr Rcpp reshape2 rlang RSeqAn seqTools zlibbioc]; }; + qcmetrics = derive2 { name="qcmetrics"; version="1.34.0"; sha256="1xr2j7d7k8fi4bfvgzmi100zhln7a7jq0jw0vn0b1jjs5zwlcikc"; depends=[Biobase knitr pander S4Vectors xtable]; }; + qmtools = derive2 { name="qmtools"; version="1.0.0"; sha256="17absfbzih3jam158byykpywlphvzjp3f59dzkjzx7x0wfps4mlz"; depends=[ggplot2 heatmaply igraph MsCoreUtils patchwork rlang scales SummarizedExperiment VIM]; }; + qpcrNorm = derive2 { name="qpcrNorm"; version="1.54.0"; sha256="06k1ymzylfsrfbs9cz6m8snrl841fbrrklymfxyrqd20kgfw13xi"; depends=[affy Biobase limma]; }; + qpgraph = derive2 { name="qpgraph"; version="2.30.0"; sha256="14vsykbb54pcm12bhdnvq1a7vvnmqw0bz93zqp5v687j01h6b4ps"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; + qrqc = derive2 { name="qrqc"; version="1.50.0"; sha256="0dv6x2g5xkncvzrh37mxlf6hin46qdbj0hrnm83fapw2jb5bfy05"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rhtslib testthat xtable]; }; + qsea = derive2 { name="qsea"; version="1.22.0"; sha256="0ir752k7is9ns6jxvdsxpjw6byxywl8kakvvfpya763rck014rw0"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; }; + qsmooth = derive2 { name="qsmooth"; version="1.12.0"; sha256="0fvmb4dd6hfh0m0zssisd3fgd2j93js45gqklpvldpcm76g0dnw7"; depends=[Hmisc SummarizedExperiment sva]; }; + qsvaR = derive2 { name="qsvaR"; version="1.0.0"; sha256="1gm2n5085jvz615lcd5qdpqlpk1wmrr395hgaixqgzxagwr5v6ll"; depends=[ggplot2 SummarizedExperiment sva]; }; + quantiseqr = derive2 { name="quantiseqr"; version="1.4.0"; sha256="1ffjx3p0kyh023szmijv52fdb19lakk5f5x353rsb1ry7qg6ivdh"; depends=[Biobase ggplot2 limSolve MASS preprocessCore rlang SummarizedExperiment tidyr]; }; + quantro = derive2 { name="quantro"; version="1.30.0"; sha256="1zfrz7lxyrbf0c8d277npzj1h4six9whkqplvcjmn3li0xj5qng3"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; }; + quantsmooth = derive2 { name="quantsmooth"; version="1.62.0"; sha256="027am11ilisdn82k0f62dj0csninfxph1bsv5ff71hsjd9wghars"; depends=[quantreg]; }; + qusage = derive2 { name="qusage"; version="2.30.0"; sha256="0ljch8y7985c0q9mfkl0sxdacwyqflszi34qm8gc9lrjf67p0q21"; depends=[Biobase emmeans fftw limma nlme]; }; + qvalue = derive2 { name="qvalue"; version="2.28.0"; sha256="0cvhm5cldcnnxwa293dig1pj9lvj2hnz9zh4gfr25sw0xlcjzmyw"; depends=[ggplot2 reshape2]; }; + r3Cseq = derive2 { name="r3Cseq"; version="1.42.0"; sha256="1dzckmciyx985zc23im5dp8jrirscdrcwyacsck8w68i37aasrl1"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; }; + rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.36.0"; sha256="05yh4zcqjwra301xala6b3wjx3i8dliifg1kydpy36gxm2qiy5l2"; depends=[data_table XML]; }; + rCGH = derive2 { name="rCGH"; version="1.26.0"; sha256="1a0dwqcs4mpwqqqxw07vphmvbqwh6989ifd7jkls0jcpn2zxsk9g"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + rDGIdb = derive2 { name="rDGIdb"; version="1.22.0"; sha256="11zqkxvbha38riah0j25crg9lwmwp9017a37ap95bh65cvxr9870"; depends=[httr jsonlite]; }; + rGADEM = derive2 { name="rGADEM"; version="2.44.0"; sha256="013xdwz0c3n0n9hxf8kkx570qry961pgdjsp023531pl5ww2ing4"; depends=[Biostrings BSgenome GenomicRanges IRanges seqLogo]; }; + rGREAT = derive2 { name="rGREAT"; version="1.28.0"; sha256="0px72r8mjimf5mxfwb9qz46kqpgjw5gaqq41hy0212ymjd8whaky"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; }; + rGenomeTracks = derive2 { name="rGenomeTracks"; version="1.2.0"; sha256="06fgw2sfnpbnaaa1clj4ahvx19pqkylyka62mdhh34sq9majxisq"; depends=[imager reticulate rGenomeTracksData]; }; + rRDP = derive2 { name="rRDP"; version="1.30.0"; sha256="091picbs0cmvn1a0pmgpxg5j2gxcdj24d1vm1gz6dch8x9sl2ly2"; depends=[Biostrings]; }; + rSWeeP = derive2 { name="rSWeeP"; version="1.8.0"; sha256="063assf7vhf62ygd58bwhixbglhjvjd9qg9vxgzid3yhjdpn2rry"; depends=[pracma]; }; + rScudo = derive2 { name="rScudo"; version="1.12.0"; sha256="08yn4biv5cadby0pvg1zhy14yc9y90z203hm7wv329x217ccm90m"; depends=[Biobase BiocGenerics igraph S4Vectors stringr SummarizedExperiment]; }; + rTRM = derive2 { name="rTRM"; version="1.34.0"; sha256="17kgipd3nr9l20x5nak24zjfpfslcm8cbj7bhmq8ch9w2ysimpw9"; depends=[AnnotationDbi DBI igraph RSQLite]; }; + rTRMui = derive2 { name="rTRMui"; version="1.34.0"; sha256="1gzw30kcnrnmjx5pn7xr1kgkgwyyjl138nsiqly5xh7h9b1is0sm"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; }; + rWikiPathways = derive2 { name="rWikiPathways"; version="1.16.0"; sha256="05nxgjc119yhkckykjzribawjxlg95qy9pb7yq1m7rv2j44izmfk"; depends=[data_table httr RCurl rjson tidyr XML]; }; + rain = derive2 { name="rain"; version="1.30.0"; sha256="1fn62w0d86lc1iilmi11cwqg2sk7fkhg9asdxnglsyiq8hz512ci"; depends=[gmp multtest]; }; + rama = derive2 { name="rama"; version="1.70.0"; sha256="1l10yq28d3qswcbza9f9jk1vx2cqzqn7r1ixwkvhj87yiqz99rhc"; depends=[]; }; + ramr = derive2 { name="ramr"; version="1.4.0"; sha256="06davx5rkcgms5423aksrcg07y4gg9xsaabhzy6adf7058xbl6dn"; depends=[BiocGenerics doParallel doRNG EnvStats ExtDist foreach GenomicRanges ggplot2 IRanges matrixStats reshape2 S4Vectors]; }; + ramwas = derive2 { name="ramwas"; version="1.20.0"; sha256="1an7ppyhnxcg2px9ydc9x623wi8vwbhxdxvvsvlna383j402r1xn"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; }; + randPack = derive2 { name="randPack"; version="1.42.0"; sha256="1mn1hwdmcvsijf5dvxvgj0pyg12m1ca4b6n0myjk5pva6xykwvhg"; depends=[Biobase]; }; + randRotation = derive2 { name="randRotation"; version="1.8.0"; sha256="0s92pvy6vw3jd2brvgnjdh3wacy3m0702qrn6wv5scsrn2b1kwxn"; depends=[Rdpack]; }; + rawrr = derive2 { name="rawrr"; version="1.4.0"; sha256="0828fmxn0bz0s01fjpripc1jg5jsdnq5l8m4c9bfwx5xnvcgsml4"; depends=[]; }; + rbsurv = derive2 { name="rbsurv"; version="2.54.0"; sha256="0dvf7nvafap2k5f3ap38zp0m4c12ih1jzg05c2n3l0wivimyp10s"; depends=[Biobase survival]; }; + rcellminer = derive2 { name="rcellminer"; version="2.18.0"; sha256="0spjill74i15j6l0ckg9yvans07fsxvim5gpq7rfxv2zblfvhaqb"; depends=[Biobase ggplot2 gplots rcellminerData shiny stringr]; }; + rebook = derive2 { name="rebook"; version="1.6.0"; sha256="02bg0gmxlcg3wj628wda41q58qjb3swqnf67nyyczjv17f4cpd8j"; depends=[BiocStyle CodeDepends dir_expiry filelock knitr rmarkdown]; }; + receptLoss = derive2 { name="receptLoss"; version="1.7.0"; sha256="1zfxbsb3bj286snbdqr7r1v9xb251ssxhkvz5gbclhj2n6hmrsgd"; depends=[dplyr ggplot2 magrittr SummarizedExperiment tidyr]; }; + reconsi = derive2 { name="reconsi"; version="1.8.0"; sha256="0vpx9a9bwwnsgaxazmdggqvw1ap34xj30rshkq0imwfw8s1hagsq"; depends=[ggplot2 ks Matrix matrixStats phyloseq reshape2]; }; + recount = derive2 { name="recount"; version="1.22.0"; sha256="1mipj8nrihn7gmxn81l9bxv0rbr9zly7s3vfrbzimvg56iq8wrly"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; + recount3 = derive2 { name="recount3"; version="1.6.0"; sha256="0322vplaz77dmvkb7f2ybfgm5bidfq97zrprhvyn28zw2qllr8vg"; depends=[BiocFileCache data_table GenomicRanges Matrix R_utils RCurl rtracklayer S4Vectors sessioninfo SummarizedExperiment]; }; + recountmethylation = derive2 { name="recountmethylation"; version="1.6.0"; sha256="029zd94zvy5f2f634i2z7swp975znjb4l69x3wfhxj1fx6yi0pq7"; depends=[BiocFileCache HDF5Array IlluminaHumanMethylation450kmanifest minfi R_utils RCurl rhdf5 S4Vectors]; }; + recoup = derive2 { name="recoup"; version="1.24.0"; sha256="1qrlhfrg991x0w5p4jlyra6wdvnqljiicckw0iqzybwp5xha8wkp"; depends=[BiocGenerics biomaRt Biostrings circlize ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 httr IRanges Rsamtools RSQLite rtracklayer S4Vectors stringr]; }; + regionReport = derive2 { name="regionReport"; version="1.30.0"; sha256="1qqii65xvmj7fgsx45n6szpr0l3z6q2c9s76mx4977wq5rhx8w09"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; + regioneR = derive2 { name="regioneR"; version="1.28.0"; sha256="11whi2v211xiz9s7cjl14d8vavlry2fmhvx12rma25wkjmhrpa3f"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; + regsplice = derive2 { name="regsplice"; version="1.22.0"; sha256="0lfgihf3v2ipw13nshwk6nzqv8qajry45zi30qhibpjdi6d3fsjd"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; }; + regutools = derive2 { name="regutools"; version="1.8.0"; sha256="1r8qxl5md44vvywfvfpkqg5jqb8zkw7hwdh2qpii20jxfd8nf77c"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings DBI GenomicRanges Gviz IRanges RCy3 RSQLite S4Vectors]; }; + restfulSE = derive2 { name="restfulSE"; version="1.18.0"; sha256="09alrj7q373w01vylnymna8hjsgs5gg9ngadglasncnk3yswjg3d"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; }; + rexposome = derive2 { name="rexposome"; version="1.18.0"; sha256="1l2ipzy94qvlfic28841fya7r6fx88q80mkyrg5767i04kmqhjwc"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; }; + rfPred = derive2 { name="rfPred"; version="1.34.0"; sha256="17kd733z728dla5vvhf7l6hg50fb9h5sz5ipi4asr88slm62dwma"; depends=[data_table GenomicRanges IRanges Rsamtools]; }; + rfaRm = derive2 { name="rfaRm"; version="1.8.0"; sha256="1brzplaw5nrwmayfjdqbwyd6xqq2h8421njpi63w6njjc41j9mhh"; depends=[Biostrings data_table httr IRanges magick rsvg rvest S4Vectors stringi xml2]; }; + rgoslin = derive2 { name="rgoslin"; version="1.0.0"; sha256="1aki1v99ww3m86fd5fjll4wiwxwpzljn9f7k7mz3x4rd9bj3zyb9"; depends=[dplyr Rcpp]; }; + rgsepd = derive2 { name="rgsepd"; version="1.28.0"; sha256="08b11x5qhkq5q17mbr4a2q5r6hz8rrd2xgssclm0flwp2czvnldx"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots org_Hs_eg_db SummarizedExperiment]; }; + rhdf5 = derive2 { name="rhdf5"; version="2.40.0"; sha256="00cp90mnb8p83jiflm6x4x0qf4p7gvgh47jk9jry6j3qyvfqaiff"; depends=[rhdf5filters Rhdf5lib]; }; + rhdf5client = derive2 { name="rhdf5client"; version="1.18.0"; sha256="1mxbpnyqhzvxqc34fyd31pai242ivzs0l28z2zssj8ja463fif9f"; depends=[DelayedArray httr R6 rjson S4Vectors]; }; + rhdf5filters = derive2 { name="rhdf5filters"; version="1.8.0"; sha256="1ipg0v8nqz1imj63scqmpiswcxbl4ankg3knfq4p06ic6ypbbmvs"; depends=[Rhdf5lib]; }; + riboSeqR = derive2 { name="riboSeqR"; version="1.30.0"; sha256="1zs3y0icsqrndjp9wwqz3jxysvyc9pch45y49j6g9b5b2l44ma26"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; }; + ribor = derive2 { name="ribor"; version="1.8.0"; sha256="1jwzxcn2civ5g2wcdzi8a10lc0y96b7xpgdb2z3yq4s9sipmbw0j"; depends=[dplyr ggplot2 hash rhdf5 rlang S4Vectors tidyr yaml]; }; + ribosomeProfilingQC = derive2 { name="ribosomeProfilingQC"; version="1.8.0"; sha256="1f57r81g1gvfs84si4mz8r7058ga525hwdf71991z58hiyxbr7xd"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome cluster EDASeq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfittext ggplot2 ggrepel IRanges motifStack Rsamtools Rsubread rtracklayer RUVSeq S4Vectors scales XVector]; }; + rifi = derive2 { name="rifi"; version="1.0.0"; sha256="15rqmlx3cnl9n8y821v42ganfyazqg85jd757mwrkmvi4xwnbmpw"; depends=[car cowplot doMC dplyr egg foreach ggplot2 nls2 nnet rlang rtracklayer S4Vectors scales stringr SummarizedExperiment tibble]; }; + rmelting = derive2 { name="rmelting"; version="1.12.0"; sha256="1ag2cr4mlb824la0yywjrjkjsnxxmjp5svg2jv4017syl1l5dj2x"; depends=[Rdpack rJava]; }; + rmspc = derive2 { name="rmspc"; version="1.2.0"; sha256="1hj93l3l4maigqd9b4vhsa24x3fjqgqw0d81gm6rjv09pyn4zclh"; depends=[BiocManager GenomicRanges processx rtracklayer stringr]; }; + rnaEditr = derive2 { name="rnaEditr"; version="1.6.0"; sha256="1js6a0y5hmkilsq1vgnkjk798z6dnz0acphgfq40p7i6182w1bx8"; depends=[BiocGenerics bumphunter corrplot GenomeInfoDb GenomicRanges IRanges logistf plyr S4Vectors survival]; }; + rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.26.0"; sha256="1gpdlv980nid6nsjg1prahdxwp1a8ij00xgzf08ir4ywpvy61ilz"; depends=[RColorBrewer]; }; + roar = derive2 { name="roar"; version="1.32.0"; sha256="0zq1praf5h9294cvmrb06l3chx8v40xw2sfvhlnh1516x9sjkwfc"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; }; + rols = derive2 { name="rols"; version="2.24.0"; sha256="05lf7nfh8rbybcw3pjpbnn4apa8fwna3nygkr6sbcm7j11q1cac2"; depends=[Biobase BiocGenerics httr jsonlite progress]; }; + ropls = derive2 { name="ropls"; version="1.28.0"; sha256="1i9g32mjknrd2lbz2nisc7nr0gk9byx9aik1i7xdwmq4ndxf8rf7"; depends=[Biobase MultiDataSet]; }; + rprimer = derive2 { name="rprimer"; version="1.0.0"; sha256="040fy6zjvjjgz9syczvy8dpv02jnl3pv8vb75n40622z0c2hl1nx"; depends=[Biostrings bslib DT ggplot2 IRanges mathjaxr patchwork reshape2 S4Vectors shiny shinycssloaders shinyFeedback]; }; + rpx = derive2 { name="rpx"; version="2.4.0"; sha256="1y6pxvzga7yzgym1q5y4hmgyc9v30c574hj37a3wx9aanmjs78kw"; depends=[BiocFileCache curl jsonlite RCurl xml2]; }; + rqt = derive2 { name="rqt"; version="1.22.0"; sha256="0039sk0dx4d7fqc9yl0grwlv5k18sv08piqyc3fyp66302p38wrj"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; }; + rqubic = derive2 { name="rqubic"; version="1.42.0"; sha256="108mw7xx04lgkj38k017mw7na1jglsbw0rx1ixb1d7hcgaqjcs63"; depends=[biclust Biobase BiocGenerics]; }; + rrvgo = derive2 { name="rrvgo"; version="1.8.0"; sha256="1r90q18nhmzh45djbi1i5x3bcyzbybkp9d5j8i8yqxphs29sr5vx"; depends=[AnnotationDbi ggplot2 ggrepel GO_db GOSemSim pheatmap shiny tm treemap wordcloud]; }; + rsbml = derive2 { name="rsbml"; version="2.54.0"; sha256="1v11pspkml6xdsacgwxw8r4qdhbnn2h2sqgpm9aidaq9p2085b0v"; depends=[BiocGenerics graph]; }; + rsemmed = derive2 { name="rsemmed"; version="1.6.0"; sha256="0dw607kxcwv5dig5y3gja5916bpjki3bkphc7jxs79y9sl22zg4p"; depends=[dplyr igraph magrittr stringr]; }; + rtracklayer = derive2 { name="rtracklayer"; version="1.56.0"; sha256="1d9sak1xrrkcvj0q3vnp6w2k0nx2k2ajhsbq0dyb4nhcghp5w8fd"; depends=[BiocGenerics BiocIO Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl restfulr Rsamtools S4Vectors XML XVector zlibbioc]; }; + runibic = derive2 { name="runibic"; version="1.18.0"; sha256="04a12w2hnybw5h27b7szd4v4r4p3z359xkrpqpqp9hmvbrx6apa6"; depends=[biclust Rcpp SummarizedExperiment testthat]; }; + sRACIPE = derive2 { name="sRACIPE"; version="1.12.0"; sha256="0q749j2pqhnmlx8d6vak3ig4ggqqwv74sfapfysbfg4n1v6cpkhp"; depends=[BiocGenerics ggplot2 gplots gridExtra htmlwidgets MASS RColorBrewer Rcpp reshape2 S4Vectors SummarizedExperiment umap visNetwork]; }; + sSNAPPY = derive2 { name="sSNAPPY"; version="1.0.0"; sha256="041lynrardz9z4yzy8bjv1w0ah4sjbkmx0wagfvxj7jhrikvky14"; depends=[BiocParallel dplyr edgeR ggplot2 ggraph graphite igraph magrittr org_Hs_eg_db plyr purrr Rcpp RcppArmadillo reshape2 rlang SummarizedExperiment tibble]; }; + sSeq = derive2 { name="sSeq"; version="1.34.0"; sha256="0cc1kz4fqf87xiq00vli8fcp4lix723vsa9ax4g55l5lqxp3k8pv"; depends=[caTools RColorBrewer]; }; + safe = derive2 { name="safe"; version="3.36.0"; sha256="19hxp2zg48dmw1j5jsp2i9n6ccw4613i5bhi5wg6kld4wy8k496v"; depends=[AnnotationDbi Biobase SparseM]; }; + sagenhaft = derive2 { name="sagenhaft"; version="1.66.0"; sha256="0czbjc83df4xgavkqf4qvypcy0wzlzpdysjmyd189jqinagifzjy"; depends=[SparseM]; }; + sampleClassifier = derive2 { name="sampleClassifier"; version="1.20.0"; sha256="1gx76wcln8nxfm4h9klndi7rpzqpcci4h0fxqqhpsd0x19yw6rz2"; depends=[annotate e1071 ggplot2 MGFM MGFR]; }; + sangeranalyseR = derive2 { name="sangeranalyseR"; version="1.5.1"; sha256="1cy2nrrypvq3kah0q7bk3fl31syb9d3zssks8ljj6aiancwfm3jl"; depends=[ape BiocStyle Biostrings data_table DECIPHER DT excelR ggdendro gridExtra knitr logger openxlsx phangorn plotly reshape2 rmarkdown sangerseqR seqinr shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr zeallot]; }; + sangerseqR = derive2 { name="sangerseqR"; version="1.32.0"; sha256="12rh6y38j66l21dlb1199imp4jwkpv19l306lj7qi7prcfwzhmmy"; depends=[Biostrings shiny]; }; + sarks = derive2 { name="sarks"; version="1.8.0"; sha256="1da5vxbf7r2yla1l1m5gcbqbka33c2ry7gwnmjixr6xlv9vs4209"; depends=[binom Biostrings cluster IRanges rJava]; }; + satuRn = derive2 { name="satuRn"; version="1.4.0"; sha256="0lqg5ha6k8wlqcrds0j4bflppqrl0q6q12h4l3k5w8kfpwy397d2"; depends=[BiocParallel boot ggplot2 limma locfdr Matrix pbapply SummarizedExperiment]; }; + savR = derive2 { name="savR"; version="1.34.0"; sha256="04zlf3lyr6vnpj80m6fd2is2f7302sxwih8nzzjnc4ss972jid2k"; depends=[ggplot2 gridExtra reshape2 scales XML]; }; + scAlign = derive2 { name="scAlign"; version="1.9.0"; sha256="0g209c1m06wn66n4zm0gyy1pg41y39d9a14dlpahni7f5zs0zmvd"; depends=[FNN ggplot2 irlba purrr Rtsne Seurat SingleCellExperiment tensorflow]; }; + scAnnotatR = derive2 { name="scAnnotatR"; version="1.2.0"; sha256="067q57kabhqd1z8l3d91fw74aaw89nb48gm6fll4hv00nqza3n5b"; depends=[AnnotationHub ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; }; + scBFA = derive2 { name="scBFA"; version="1.10.0"; sha256="1w9jy37626ap1lfg7lg672nmbwq8w277mdk7b8xwif4hrjdzkl2f"; depends=[copula DESeq2 ggplot2 MASS Matrix Seurat SingleCellExperiment SummarizedExperiment zinbwave]; }; + scCB2 = derive2 { name="scCB2"; version="1.6.0"; sha256="0mlkm43piaw2krbh7sh7q26lzj0zvwnwhiw37i59va0kp1zg43h5"; depends=[doParallel DropletUtils edgeR foreach iterators Matrix rhdf5 Seurat SingleCellExperiment SummarizedExperiment]; }; + scClassify = derive2 { name="scClassify"; version="1.8.0"; sha256="0c4nrgwr7mzb888g27ak0gfz6hvm02n6y0y37z3c7xch71l0lqx0"; depends=[BiocParallel Cepo cluster diptest ggplot2 ggraph hopach igraph limma Matrix mgcv minpack_lm mixtools proxy proxyC S4Vectors statmod]; }; + scDD = derive2 { name="scDD"; version="1.20.0"; sha256="0bjww338z5qf2g97kbh85h9kpagjr59ff9f4alm33h16xz5mb7k0"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; }; + scDataviz = derive2 { name="scDataviz"; version="1.6.0"; sha256="0h7jb0pwff7vq5yarab1c242g1gx21y6h6a8pj7v9yi0i62j3p6n"; depends=[corrplot flowCore ggplot2 ggrepel MASS matrixStats RColorBrewer reshape2 S4Vectors scales Seurat SingleCellExperiment umap]; }; + scDblFinder = derive2 { name="scDblFinder"; version="1.10.0"; sha256="0y14dvdm16b3bvlrnz03adfylm1kj6jrp2fwciyldij2lfal90y0"; depends=[BiocGenerics BiocNeighbors BiocParallel BiocSingular bluster DelayedArray GenomeInfoDb GenomicRanges igraph IRanges MASS Matrix Rsamtools rtracklayer S4Vectors scater scran scuttle SingleCellExperiment SummarizedExperiment xgboost]; }; + scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.16.0"; sha256="0nnw9di62r68ih25l11755aikgh2p577dnla1yb0q9gdxcvbyxai"; depends=[dplyr ggplot2 magrittr rlang tibble]; }; + scGPS = derive2 { name="scGPS"; version="1.10.0"; sha256="0z5my7x2yigl024nl0vx1261amf66q7vdgpam2wxqrsvw4f7ylvz"; depends=[caret DESeq2 dplyr dynamicTreeCut fastcluster ggplot2 glmnet locfit Rcpp RcppArmadillo RcppParallel SingleCellExperiment SummarizedExperiment]; }; + scHOT = derive2 { name="scHOT"; version="1.8.0"; sha256="05qkq5bg351rpx01q1c1hs7y1zygp6m6r7javia67j8r5w7iir3p"; depends=[BiocParallel ggforce ggplot2 igraph IRanges Matrix reshape S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scMAGeCK = derive2 { name="scMAGeCK"; version="1.8.0"; sha256="0qmqn2w16wzgyrbfgh16xaw2kccm6nhdib9nva6w6mg29xa5ifkb"; depends=[ggplot2 Seurat]; }; + scMerge = derive2 { name="scMerge"; version="1.12.0"; sha256="0p55zp02zkdn7g6hdv7ilv7h4ii4988gkd6kf2naq83xs201m2k3"; depends=[BiocParallel BiocSingular cluster DelayedArray DelayedMatrixStats distr igraph M3Drop pdist proxy ruv S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scPCA = derive2 { name="scPCA"; version="1.10.0"; sha256="1ia5z1qf2jvilamkw3vgxshw14bzl4xk19s1bm9f4p08ghvx6px0"; depends=[assertthat BiocParallel cluster coop DelayedArray dplyr elasticnet kernlab Matrix MatrixGenerics matrixStats origami purrr Rdpack RSpectra ScaledMatrix sparsepca stringr tibble]; }; + scPipe = derive2 { name="scPipe"; version="1.18.0"; sha256="13wam3qbp9c8qgsp7hm7jq7q0a1ala6mw2xnp3nfbyz39aiwbix9"; depends=[AnnotationDbi BiocGenerics biomaRt dplyr GenomicRanges GGally ggplot2 glue hash magrittr MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib rlang robustbase rtracklayer S4Vectors scales scater SingleCellExperiment stringr SummarizedExperiment testthat zlibbioc]; }; + scReClassify = derive2 { name="scReClassify"; version="1.2.0"; sha256="1afwxnvn17a5awcggifas7zaiw2r556l9iq1yl4kq06s73c1dfws"; depends=[e1071 randomForest SingleCellExperiment SummarizedExperiment]; }; + scRecover = derive2 { name="scRecover"; version="1.12.0"; sha256="0p3j54ii9assvhpyy8x8zwibv56h7mf4clvahgp0shp0qg4x7zjv"; depends=[bbmle BiocParallel doParallel foreach gamlss kernlab MASS Matrix penalized preseqR pscl Rmagic rsvd SAVER]; }; + scRepertoire = derive2 { name="scRepertoire"; version="1.6.0"; sha256="0an485i5myfiv2zzwd3ql7ckawid894md3k2603mz2yz6qfsl8yj"; depends=[doParallel dplyr ggalluvial ggplot2 igraph plyr powerTCR reshape2 rlang SeuratObject stringdist stringr SummarizedExperiment vegan]; }; + scShapes = derive2 { name="scShapes"; version="1.2.0"; sha256="1ammb3a7ddys5zl2maggx3xqvdycy9dn9fl4kffrnqv4abfkvs9c"; depends=[BiocParallel dgof emdbook magrittr MASS Matrix pscl VGAM]; }; + scTGIF = derive2 { name="scTGIF"; version="1.10.0"; sha256="0vmr6fginvs1zdzzqmvw8yz25s3w58fwb9ifk8rca922af4m72jx"; depends=[Biobase BiocStyle ggplot2 GSEABase igraph knitr msigdbr nnTensor plotly RColorBrewer Rcpp rmarkdown S4Vectors scales schex SingleCellExperiment SummarizedExperiment tagcloud tibble]; }; + scTHI = derive2 { name="scTHI"; version="1.8.0"; sha256="1izl8fk4p1ihxb42d4vi5pnxwi2v2j1630sbw70yajxav6i7riav"; depends=[BiocParallel Rtsne]; }; + scTensor = derive2 { name="scTensor"; version="2.6.0"; sha256="0g3qjxq48aq1kx3b7ma1faxyqvz1qxphvin5byhbird9hn36fljw"; depends=[abind AnnotationDbi AnnotationHub BiocManager BiocStyle Category ccTensor checkmate crayon DOSE ggplot2 GOstats heatmaply igraph knitr MeSHDbi meshr nnTensor outliers plotly plotrix reactome_db ReactomePA rmarkdown RSQLite rTensor S4Vectors schex SingleCellExperiment SummarizedExperiment tagcloud visNetwork]; }; + scTreeViz = derive2 { name="scTreeViz"; version="1.2.0"; sha256="005pin0wvq4vws436jqjnpxrgqy0c5pbfg1g3j6mwfpn970frawp"; depends=[clustree data_table digest epivizr epivizrData epivizrServer ggplot2 ggraph httr igraph Matrix Rtsne S4Vectors scater scran Seurat SingleCellExperiment SummarizedExperiment sys]; }; + scanMiR = derive2 { name="scanMiR"; version="1.2.0"; sha256="177v72kgzkh2mvbj1sz2c833w51dgknx23h04awi5kh1gxfbhshk"; depends=[BiocParallel Biostrings cowplot data_table GenomeInfoDb GenomicRanges ggplot2 ggseqlogo IRanges S4Vectors stringi]; }; + scanMiRApp = derive2 { name="scanMiRApp"; version="1.2.0"; sha256="1m24vq9cq8n912hx6l0q2miwz8ln235j74514lf97jc9srm60scm"; depends=[AnnotationDbi AnnotationFilter AnnotationHub BiocParallel Biostrings data_table digest DT ensembldb fst GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 htmlwidgets IRanges Matrix plotly rintrojs rtracklayer S4Vectors scanMiR scanMiRData shiny shinycssloaders shinydashboard shinyjqui waiter]; }; + scater = derive2 { name="scater"; version="1.24.0"; sha256="0dqirggw7my5nq4ln9q0ya18ciqplkz9gx318ffias9ag3yii5rw"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel BiocSingular DelayedArray DelayedMatrixStats ggbeeswarm ggplot2 ggrepel gridExtra Matrix RColorBrewer RcppML rlang Rtsne S4Vectors scuttle SingleCellExperiment SummarizedExperiment viridis]; }; + scatterHatch = derive2 { name="scatterHatch"; version="1.2.0"; sha256="0a35xbd9ziph7h0dc6qc8816frkjqiawxwdyiac80s0r7r8x8mpx"; depends=[ggplot2 plyr spatstat_geom]; }; + sccomp = derive2 { name="sccomp"; version="1.0.0"; sha256="0acch9aa6w5lqkcvjcpzmaii65r1zb0hssndmjbbwn3zhm8ryirc"; depends=[BH boot dplyr forcats ggplot2 ggrepel lifecycle magrittr patchwork purrr Rcpp RcppEigen RcppParallel readr rlang rstan rstantools scales SeuratObject SingleCellExperiment StanHeaders stringr tibble tidyr tidyselect]; }; + scde = derive2 { name="scde"; version="2.24.0"; sha256="074rhfxv80hg4sfl4ksyqz6wz108zwp5bfi602p81i0zfprvkg3g"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; }; + scds = derive2 { name="scds"; version="1.12.0"; sha256="0zmqhsfdx60g1caxbf4vh356wf06v7fgfv7lng5y13vqlf5d875h"; depends=[dplyr Matrix pROC S4Vectors SingleCellExperiment SummarizedExperiment xgboost]; }; + schex = derive2 { name="schex"; version="1.10.0"; sha256="0kv0sagxkdqj5jd58hj7w7v0swrvnd162wqg31zb32iwxb8y012w"; depends=[cluster concaveman dplyr entropy ggforce ggplot2 hexbin scales Seurat shiny SingleCellExperiment]; }; + scmap = derive2 { name="scmap"; version="1.18.0"; sha256="0pfwaa9pgml11b84rpf7afdkmg8kxb4srgpc56571vaz388xrv7l"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scmeth = derive2 { name="scmeth"; version="1.16.0"; sha256="15v1f641zdk70l5ss08kgvvq5h7b213f6zc5bg8jakqx2cj99xx9"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; }; + scone = derive2 { name="scone"; version="1.20.0"; sha256="05id34n6min03ha1chg5mrvx399qm2mby9kxkaz5w8fbidp97851"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma MatrixGenerics matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SingleCellExperiment SummarizedExperiment]; }; + scoreInvHap = derive2 { name="scoreInvHap"; version="1.18.0"; sha256="10ipfhmp93jjw5ijqiv34vkl79i0wmc9mwwrz2j641qlbkyxziaq"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; }; + scp = derive2 { name="scp"; version="1.6.0"; sha256="09gjq6n7rp4wngfq1yplcrkjrc7yw9w6rg7d2jr6lfj1x74p8syn"; depends=[dplyr magrittr matrixStats MsCoreUtils MultiAssayExperiment QFeatures rlang S4Vectors SingleCellExperiment SummarizedExperiment]; }; + scran = derive2 { name="scran"; version="1.24.0"; sha256="0xg7dl35915a65pmzkxdacsm4iqf97ayljdjljcvqx1ycmn7x68w"; depends=[beachmat BH BiocGenerics BiocParallel BiocSingular bluster DelayedArray DelayedMatrixStats dqrng edgeR igraph limma Matrix metapod Rcpp S4Vectors scuttle SingleCellExperiment statmod SummarizedExperiment]; }; + scruff = derive2 { name="scruff"; version="1.14.0"; sha256="0y5p27ih1v4qz47i83zvwwk1d4qkw6i9hwkfpdma3fw87ffxdy0q"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr Rsamtools Rsubread rtracklayer S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; }; + scry = derive2 { name="scry"; version="1.8.0"; sha256="16mj21r91jy8ircdz8rfrdli9gjy0hrx90kf6ghs305d3d4dl193"; depends=[BiocSingular DelayedArray glmpca HDF5Array Matrix SingleCellExperiment SummarizedExperiment]; }; + scuttle = derive2 { name="scuttle"; version="1.6.0"; sha256="1l2vg6c8wpbspcrrp0jrq7pq23y9vj9921pr5wn0yxp8hb9ip4j2"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats GenomicRanges Matrix Rcpp S4Vectors SingleCellExperiment SummarizedExperiment]; }; + sechm = derive2 { name="sechm"; version="1.4.1"; sha256="1rimldsflmaa0ljrhi4am91hvkx6k8xvx5b0q3yl5ndblv2i6rvc"; depends=[circlize ComplexHeatmap matrixStats randomcoloR S4Vectors seriation SummarizedExperiment]; }; + segmentSeq = derive2 { name="segmentSeq"; version="2.30.0"; sha256="16ijs06ccm36z634qyrs3pjcnv0ssdzbvd4r76n55qq0mb10fgcq"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; }; + segmenter = derive2 { name="segmenter"; version="1.2.0"; sha256="1q3dx6j3d85f94ki67lga81d7nk0swy5y8ip3fab186i3amdlwjk"; depends=[bamsignals ChIPseeker chromhmmData ComplexHeatmap GenomicRanges IRanges S4Vectors SummarizedExperiment]; }; + selectKSigs = derive2 { name="selectKSigs"; version="1.8.0"; sha256="00wbbakdd5jggd1wrv7cra1mrzs6r5jg21b760ym056wcmqggn09"; depends=[gtools HiLDA magrittr Rcpp]; }; + semisup = derive2 { name="semisup"; version="1.20.0"; sha256="0676sb39kz3aw70s87snj38kcdc3dhxq4i9wlbmafj4qxrly0l01"; depends=[VGAM]; }; + seq2pathway = derive2 { name="seq2pathway"; version="1.28.0"; sha256="0258fck970ryg3k5ilp5nhxpr3q6hgj3rgjnbxcmvmyclp3bfn8f"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; + seqArchR = derive2 { name="seqArchR"; version="1.0.0"; sha256="1qivaakafyr080a1r544hfkn109y6ahjpjprkr5qjcb89q5yi0pn"; depends=[BiocParallel Biostrings cli cluster cvTools fpc ggplot2 ggseqlogo MASS Matrix matrixStats prettyunits reshape2 reticulate]; }; + seqCAT = derive2 { name="seqCAT"; version="1.18.0"; sha256="0fjx1rl4jm2jil126iy594la13ai8yf4j2axyxhhs69v5wss2d8s"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges rlang rtracklayer S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; + seqCNA = derive2 { name="seqCNA"; version="1.42.0"; sha256="0jkg85ymhz0m7s910x9fp0jxq054j972ljzhvxah9b3y4q4nmxi1"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; + seqLogo = derive2 { name="seqLogo"; version="1.62.0"; sha256="1lk3238m17acmd6lgjjbpscyxw8fm63wv34kbbr478wcih1wbwxr"; depends=[]; }; + seqPattern = derive2 { name="seqPattern"; version="1.28.0"; sha256="0nrrlr1nl9zxmp88qq8jn7wgmda6jh0xvp4nph94w4nwjsyb7xqn"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; + seqTools = derive2 { name="seqTools"; version="1.30.0"; sha256="0cbikjgg6b5mpr8p8d3mfnyzz917qcvc3bsn3z2c3qq5kllp0qmd"; depends=[zlibbioc]; }; + seqbias = derive2 { name="seqbias"; version="1.44.0"; sha256="085nq6pf0bdn17wsbr5jnyy512v7rf67xff9rp5wz47mcifbv6rg"; depends=[Biostrings GenomicRanges Rhtslib]; }; + seqcombo = derive2 { name="seqcombo"; version="1.18.0"; sha256="1y8pv1zl0vv5ng9nl0rgsgig6k6n6v9jhmax7wgrplz056x1ha8p"; depends=[ggplot2 igraph yulab_utils]; }; + seqsetvis = derive2 { name="seqsetvis"; version="1.16.0"; sha256="0yzr1xcyhmziajj8c0v6gxsy5hz01i2ld0m4dvgx51f91gdv4q3p"; depends=[cowplot data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors UpSetR]; }; + sesame = derive2 { name="sesame"; version="1.14.0"; sha256="06izlyjbigsvm4f99raajqrl8fzwk5pb2rnv63zx8clr8gdba9sw"; depends=[BiocFileCache BiocParallel dplyr GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges MASS preprocessCore readr reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; + sevenC = derive2 { name="sevenC"; version="1.16.0"; sha256="0gv319qrm37yrzvrv9ns0vsar18i0b94mgqbsnkw3122mzrlhfy1"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; + sevenbridges = derive2 { name="sevenbridges"; version="1.26.0"; sha256="170msiz4n1n16m3cddnw6jpwvh2j7y6gi6cvbzr4psqabynlvn7x"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; + shinyMethyl = derive2 { name="shinyMethyl"; version="1.32.0"; sha256="1636y3f9653l5dn4pyrq7kz54vjy2fmg4qrr9pav0215rfilgzyy"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; + shinyepico = derive2 { name="shinyepico"; version="1.4.0"; sha256="041agrbqd39f2ckq4bs4vd1k4cqahk268v07dqlirr5g6ki4lwgr"; depends=[data_table doParallel dplyr DT foreach GenomicRanges ggplot2 gplots heatmaply limma minfi plotly reshape2 rlang rmarkdown rtracklayer shiny shinycssloaders shinyjs shinythemes shinyWidgets statmod tidyr zip]; }; + sigFeature = derive2 { name="sigFeature"; version="1.14.0"; sha256="0770hqhq7y1q3mknsfjh0x2rwlmm85wqhi7375bpj612npaqdc7m"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; }; + sigPathway = derive2 { name="sigPathway"; version="1.64.0"; sha256="1c2kwhbxgf66az7ssm2mab9n5x59zy4kxq8vblz5r9636xqaysif"; depends=[]; }; + siggenes = derive2 { name="siggenes"; version="1.70.0"; sha256="0amjqm2c8p1vjzx109p7n81wbsbx8rljwn6mbkl7dpi834im9d7l"; depends=[Biobase multtest scrime]; }; + sights = derive2 { name="sights"; version="1.22.0"; sha256="040qm341bk62pqdl58dninh8mbh7spn8m21vp2nhnmgdqy1v4kqp"; depends=[ggplot2 lattice MASS qvalue reshape2]; }; + signatureSearch = derive2 { name="signatureSearch"; version="1.10.0"; sha256="1kjxbfvbhhxlxg4ms74pz03vmpn39315rw2p0gq2amr94dqv6yd5"; depends=[AnnotationDbi BiocGenerics BiocParallel clusterProfiler data_table DelayedArray DOSE dplyr ExperimentHub fastmatch fgsea ggplot2 GSEABase HDF5Array magrittr Matrix qvalue Rcpp reactome_db readr reshape2 rhdf5 RSQLite scales SummarizedExperiment visNetwork]; }; + signeR = derive2 { name="signeR"; version="1.22.0"; sha256="13jv0f90p462clwncp2ggky0n1xx4vaicak8712dnqzfzch04pzm"; depends=[BiocGenerics Biostrings class GenomeInfoDb GenomicRanges IRanges nloptr NMF PMCMRplus Rcpp RcppArmadillo VariantAnnotation]; }; + sigsquared = derive2 { name="sigsquared"; version="1.28.0"; sha256="13dvbl3s345yqmdxcrk19ql1asspgcc08p9sfyx1n6caamwg90a9"; depends=[Biobase survival]; }; + similaRpeak = derive2 { name="similaRpeak"; version="1.28.0"; sha256="14bkmfwwx0x8gz78bzyhfgy5rpvvafxq5z9r8knv4qj6hp1kalsh"; depends=[R6]; }; + simplifyEnrichment = derive2 { name="simplifyEnrichment"; version="1.6.0"; sha256="1g3kfa17p60jkk4l34vc5hdq83w082qsxbjvpqw7r9rdd8d79z2q"; depends=[AnnotationDbi BiocGenerics circlize clue cluster colorspace ComplexHeatmap digest GetoptLong GlobalOptions GO_db GOSemSim Matrix org_Hs_eg_db proxyC slam tm]; }; + sincell = derive2 { name="sincell"; version="1.28.0"; sha256="152hlryc3xhkyp2v7fq20f0d04b2wvr09fl5p8fhiw1r0465vyab"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; }; + single = derive2 { name="single"; version="1.0.0"; sha256="1nx6cglidcmxznmvpkydj1lhgb2wyisl3yqqj0kfzbng2mxv6g0r"; depends=[BiocGenerics Biostrings dplyr GenomicAlignments IRanges reshape2 rlang Rsamtools stringr tidyr]; }; + singleCellTK = derive2 { name="singleCellTK"; version="2.6.0"; sha256="06hvxxdd8sdx8idgfqpnlxap7mq80asqgl5iq2paa1p6zvjk0w1b"; depends=[ape batchelor Biobase BiocParallel celda celldex circlize cluster colorspace colourpicker ComplexHeatmap cowplot data_table DelayedArray DelayedMatrixStats DESeq2 dplyr DropletUtils DT enrichR ExperimentHub fields fishpond generics ggplot2 ggplotify ggrepel ggtree gridExtra GSEABase GSVA GSVAdata igraph KernSmooth limma magrittr MAST Matrix matrixStats metap msigdbr multtest plotly plyr R_utils reshape2 reticulate rlang rmarkdown ROCR Rtsne S4Vectors scater scDblFinder scds scMerge scran scRNAseq scuttle Seurat shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SingleR SoupX SummarizedExperiment sva TENxPBMCData tibble TrajectoryUtils TSCAN tximport VAM withr yaml zinbwave]; }; + singscore = derive2 { name="singscore"; version="1.16.0"; sha256="0jnncpv9bjpp8xlzpx6ks78pil87cg0a3i5ihsp0yrs676dmhhhr"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape reshape2 S4Vectors SummarizedExperiment tidyr]; }; + sitadela = derive2 { name="sitadela"; version="1.4.0"; sha256="162y2xfnv3bpgcmzrr9mhbgns3q1sfpsiif163r3p667iic80ffv"; depends=[Biobase BiocGenerics biomaRt Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools RSQLite rtracklayer S4Vectors]; }; + sitePath = derive2 { name="sitePath"; version="1.12.0"; sha256="0kxg6zpljzqbvz00k2akv3fl5kwf90lldmgjzr429gwcip5ggzdf"; depends=[ape aplot ggplot2 ggrepel ggtree gridExtra RColorBrewer Rcpp seqinr tidytree]; }; + sizepower = derive2 { name="sizepower"; version="1.66.0"; sha256="0f5y2b4zx978js5y3vm77dcc1lvn9lqyjnpi5mdqxcmp6n5sbwgl"; depends=[]; }; + skewr = derive2 { name="skewr"; version="1.28.0"; sha256="0b800yjyfdqwzaxrkair1dgd54l5bdw72ppln464fppqq3lmr9l3"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; }; + slalom = derive2 { name="slalom"; version="1.18.0"; sha256="04yy7h4d9jm44alg4w0yzslk4h8qrlz1ij9d5i40hlbra79nsy69"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; }; + slingshot = derive2 { name="slingshot"; version="2.4.0"; sha256="0xapi66l5z2qdqns3fcjqcjal6npqj7rxra60lwjvbrq49pq69p2"; depends=[igraph matrixStats princurve S4Vectors SingleCellExperiment SummarizedExperiment TrajectoryUtils]; }; + snapCGH = derive2 { name="snapCGH"; version="1.66.0"; sha256="03mz36ghpj4fvl9klhjgkqnxds6ickva2azq3hnxmb7jnak3rnlq"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; }; + snapcount = derive2 { name="snapcount"; version="1.8.0"; sha256="0dh7havwzl1fhypf5aygi56agf6hqps714viq9rjzk4bd9shmcna"; depends=[assertthat data_table GenomicRanges httr IRanges jsonlite magrittr Matrix purrr R6 rlang stringr SummarizedExperiment]; }; + snifter = derive2 { name="snifter"; version="1.6.0"; sha256="09hp1lchzhm8iilc34lnyaxr5002zcg3ihcfv4fv07vc5i52ydmw"; depends=[assertthat basilisk irlba reticulate]; }; + snm = derive2 { name="snm"; version="1.44.0"; sha256="08vpzp7xr2w2qg1zcxqqj4wayik661cv2s5niivb7r82jxf6rm6i"; depends=[corpcor lme4]; }; + snpStats = derive2 { name="snpStats"; version="1.46.0"; sha256="0a5b5nqc7n965jk45ijwkzbn416ib4gfhp8xl39z8f2bdskip4a2"; depends=[BiocGenerics Matrix survival zlibbioc]; }; + soGGi = derive2 { name="soGGi"; version="1.28.0"; sha256="0hdqikcisva4blak5znwwv4xxvxxkg5n3jx0q4mhbqk7sp28p8vp"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + sojourner = derive2 { name="sojourner"; version="1.10.0"; sha256="19gg70hjydxqj46ll6hanl3yvcpc9kmy65i1hh1w6yqph05xralb"; depends=[dplyr EBImage fitdistrplus ggplot2 gridExtra lattice MASS mclust minpack_lm mixtools mltools nls2 pixmap plyr R_matlab Rcpp reshape2 rlang sampSurf scales shiny shinyjs sp truncnorm]; }; + sparrow = derive2 { name="sparrow"; version="1.2.0"; sha256="0asmqfadqjc99dvrcdsz6jcvqkkqd5d3cf822jpf93ywk75a7gww"; depends=[babelgene BiocGenerics BiocParallel BiocSet checkmate circlize ComplexHeatmap data_table DelayedMatrixStats edgeR ggplot2 GSEABase irlba limma Matrix plotly viridis]; }; + sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.20.0"; sha256="16wgj99i05s4gvv8i7k8ycdmyjs2bp6n61ahab0x10qhw823yy4s"; depends=[MASS MCMCpack optparse tmvtnorm]; }; + sparseMatrixStats = derive2 { name="sparseMatrixStats"; version="1.8.0"; sha256="0p12kay7p5zbfm2589wdx0n9jhgpf5fb2fsmkhn3p4ck4xcy13x2"; depends=[Matrix MatrixGenerics matrixStats Rcpp]; }; + sparsenetgls = derive2 { name="sparsenetgls"; version="1.14.0"; sha256="0818i5hk62gynb3f5slrw5b86n9gj14p9kabk1lhmdhqpbynpar5"; depends=[glmnet huge MASS Matrix]; }; + spatialDE = derive2 { name="spatialDE"; version="1.2.0"; sha256="1hbs8z8hfgmnj4zzjppg5zpkv6i4baaqargiwf8gqdv1abzi3dbn"; depends=[basilisk checkmate ggplot2 ggrepel gridExtra Matrix reticulate S4Vectors scales SpatialExperiment SummarizedExperiment]; }; + spatialHeatmap = derive2 { name="spatialHeatmap"; version="2.2.0"; sha256="1jl9p53k7sxjg4nn5qkfcsf0p1warg26j488x5nkpnqhng59pg0q"; depends=[av BiocFileCache BiocParallel data_table DESeq2 distinct dynamicTreeCut edgeR flashClust genefilter ggdendro ggplot2 ggplotify gplots gridExtra grImport HDF5Array htmlwidgets igraph limma magick Matrix plotly pROC rappdirs reshape2 rols rsvg S4Vectors scater scran scuttle shiny shinydashboard SingleCellExperiment SummarizedExperiment UpSetR visNetwork WGCNA xml2 yaml]; }; + spatzie = derive2 { name="spatzie"; version="1.2.0"; sha256="0zgy1m4ljsr51mdd8bqv64gx08yqk9r3cgbszyq4k0sjk136xg2m"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicFeatures GenomicInteractions GenomicRanges ggplot2 IRanges matrixStats motifmatchr S4Vectors SummarizedExperiment TFBSTools]; }; + specL = derive2 { name="specL"; version="1.30.0"; sha256="0xrjbwsjc02amgmmsj5s63fdlimf4726d9s22jmm243b6s16nbh6"; depends=[DBI protViz RSQLite seqinr]; }; + spicyR = derive2 { name="spicyR"; version="1.8.0"; sha256="1znndd64nz9jgw2paj5qb9wr7zrdl905q7kz0g159syl8lzlixg7"; depends=[BiocGenerics BiocParallel concaveman data_table dplyr ggplot2 IRanges lme4 lmerTest mgcv pheatmap rlang S4Vectors scam spatstat_core spatstat_geom tidyr]; }; + spikeLI = derive2 { name="spikeLI"; version="2.56.0"; sha256="1sjy783ab394x3f3wqsh1slcq6i2xdns25w1pkp7hvjwsrmmq8f4"; depends=[]; }; + spiky = derive2 { name="spiky"; version="1.2.0"; sha256="0nfazdrlzgh1p3rsfmaibkyag5h0mmbbmnhaqg6nxnv92yddqfyr"; depends=[bamlss Biostrings BlandAltmanLeh BSgenome GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges Rsamtools S4Vectors scales]; }; + spkTools = derive2 { name="spkTools"; version="1.52.0"; sha256="006v158b9397r1w64ah7rqxdzj4sxha5cb82rdcxssbwkz7zmghl"; depends=[Biobase gtools RColorBrewer]; }; + splatter = derive2 { name="splatter"; version="1.20.0"; sha256="1bh5w1jsxaizs0n9f9pv2s84l6j4k3fgdbyxwvzzva602kwhxbqf"; depends=[BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats S4Vectors scales scater SingleCellExperiment SummarizedExperiment]; }; + splineTimeR = derive2 { name="splineTimeR"; version="1.24.0"; sha256="1b0mlfmy237s4pw8ycf4z9qjq41kk1ayky6ga211bik35x0k6yzs"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; }; + splots = derive2 { name="splots"; version="1.62.0"; sha256="08mrk44v90zs7hj7k809d6ay88rj7cpx3ijmnshp7fmf998l3pfm"; depends=[RColorBrewer]; }; + spqn = derive2 { name="spqn"; version="1.8.0"; sha256="02dd1irl15nb9ydwsjbdx1n01xiav0aylnmyipv1rjajciyg0xsq"; depends=[BiocGenerics ggplot2 ggridges matrixStats SummarizedExperiment]; }; + srnadiff = derive2 { name="srnadiff"; version="1.16.0"; sha256="1g2g6y2mlqq7p79q5xm11i963gjxbzzxvggz5lzpl55kaz8bxxlr"; depends=[baySeq BiocManager BiocParallel BiocStyle DESeq2 devtools edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rcpp Rsamtools rtracklayer S4Vectors SummarizedExperiment]; }; + ssPATHS = derive2 { name="ssPATHS"; version="1.10.0"; sha256="0zf9mpjsrcvp4mj41dz9r8q0r94b5rsgm9f17qv2pyl7a33daivv"; depends=[dml MESS ROCR SummarizedExperiment]; }; + sscore = derive2 { name="sscore"; version="1.68.0"; sha256="10zvpqjg19l1jwcvbz5bc2gm0gr25apnzl19y7d886bkd9xc68wl"; depends=[affy affyio]; }; + sscu = derive2 { name="sscu"; version="2.26.0"; sha256="1dd1kf6h062d2billx632ykbjyzygsmjlkvy7cfqq690bi54kqpj"; depends=[BiocGenerics Biostrings seqinr]; }; + ssize = derive2 { name="ssize"; version="1.70.0"; sha256="08bdw9x6dj52fv3jhp27pkbpri81mpn8rggawb5lp1si4fwaxzgk"; depends=[gdata xtable]; }; + ssrch = derive2 { name="ssrch"; version="1.12.0"; sha256="0l9rhi66knb9d9v93qbxf9vwz9wpz82vlfs39i5bwd3mprlzp6kx"; depends=[DT shiny]; }; + ssviz = derive2 { name="ssviz"; version="1.30.0"; sha256="0hnbcxn4m1q2yffi3xrxk4mbjxjn5axl5p8ffli145jjr00n0mq5"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; }; + staRank = derive2 { name="staRank"; version="1.38.0"; sha256="0jbyg1b2gc9snnqnybapqmp5mwyhh9b3l4dswfxbx3jdl514wamr"; depends=[cellHTS2]; }; + stageR = derive2 { name="stageR"; version="1.18.0"; sha256="0ns3ih6l4na6irshrc5iy4d9qf7hrnqq3ndnlcjb2i1cn38l2w9y"; depends=[SummarizedExperiment]; }; + standR = derive2 { name="standR"; version="1.0.0"; sha256="0cqsvnm4ffg0gq5qlx81hmhz8cjpsc451jmwlvfzrhhxy3i9d1v5"; depends=[Biobase BiocGenerics dplyr edgeR ggplot2 limma mclustcomp patchwork readr rlang ruv S4Vectors SingleCellExperiment SpatialExperiment SummarizedExperiment tibble tidyr]; }; + statTarget = derive2 { name="statTarget"; version="1.26.0"; sha256="0k182sp8vzrwn3zxxqyi11bq0ca90w5ly0pdc03kflgr4z186fs8"; depends=[impute pdist pls plyr randomForest ROC rrcov]; }; + stepNorm = derive2 { name="stepNorm"; version="1.68.0"; sha256="1czlhb9cqhacl4g87ydgsb8i9ilcxr9gb64kx7vxk49dv6ffyszi"; depends=[marray MASS]; }; + strandCheckR = derive2 { name="strandCheckR"; version="1.14.0"; sha256="15r5ng9z9zyijm7w562dml56lxjvj290cxbjm8r59dvb7g9br07b"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 rmarkdown Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + struct = derive2 { name="struct"; version="1.8.0"; sha256="03cd2v72m0p0k99qhvpsbhvdlvx608a7765h6zcawbys35h7k020"; depends=[knitr ontologyIndex rols S4Vectors SummarizedExperiment]; }; + structToolbox = derive2 { name="structToolbox"; version="1.8.0"; sha256="015iabqbjy4zar42dnrnj3602y89rc0ln2y3chrwfk3bd00317dj"; depends=[ggplot2 ggthemes gridExtra scales sp struct]; }; + subSeq = derive2 { name="subSeq"; version="1.26.0"; sha256="1fwnjw0bqjqwb39i4cy34ipa6nw6jmk01d4la7r3fmf57xz73sp7"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; }; + supersigs = derive2 { name="supersigs"; version="1.4.0"; sha256="0llhk099ql7xv5wcb710pgz6r5ljiac5g9bjwwvzvg3rnjnsq9im"; depends=[assertthat Biostrings caret dplyr rlang rsample SummarizedExperiment tidyr]; }; + supraHex = derive2 { name="supraHex"; version="1.34.0"; sha256="1677sffcndrymh8dlahl7qh35zs9k5h0h4x040a7lal1iaqzgxdi"; depends=[ape dplyr hexbin igraph magrittr MASS purrr readr stringr tibble tidyr]; }; + surfaltr = derive2 { name="surfaltr"; version="1.2.1"; sha256="1k6rq0rg2lvmghsw1cw3lnmyb8jfdgiyfi0dybx8pq4dyxf67fgh"; depends=[biomaRt Biostrings dplyr ggplot2 httr msa protr readr seqinr stringr testthat xml2]; }; + survcomp = derive2 { name="survcomp"; version="1.46.0"; sha256="1b39s6v0awmznfs2gkklps1x3pnk0b4420vhrhgfv5lakz89f1zi"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; }; + survtype = derive2 { name="survtype"; version="1.12.0"; sha256="0ihq2js9j2wkbqpgvpk8mzd0rrjvwmmdph84nhm20z04mfbsl4k5"; depends=[clustvarsel pheatmap SummarizedExperiment survival survminer]; }; + sva = derive2 { name="sva"; version="3.44.0"; sha256="0ka259rn0la0hjslj7w24q1dyyh79h84nw6mxp7armqbfjb207a4"; depends=[BiocParallel edgeR genefilter limma matrixStats mgcv]; }; + svaNUMT = derive2 { name="svaNUMT"; version="1.2.0"; sha256="13kk77bqsm8pk8kwjk8ag4mg7f8fqgpypwkdv5zhqds51zb14pkm"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; + svaRetro = derive2 { name="svaRetro"; version="1.2.0"; sha256="15q7k9rjds0qzyighfp1bn6j8jr36h9wckvb1sfg0zk3lhzr04sz"; depends=[assertthat BiocGenerics Biostrings dplyr GenomeInfoDb GenomicFeatures GenomicRanges rlang rtracklayer S4Vectors stringr StructuralVariantAnnotation VariantAnnotation]; }; + swfdr = derive2 { name="swfdr"; version="1.22.0"; sha256="1gkam38fcn0i5vrkngapf2wbbixbr059xi1xl04iwnllz1xg0sny"; depends=[]; }; + switchBox = derive2 { name="switchBox"; version="1.32.0"; sha256="0fyysinxa14fx2lwmpishyva7jn4m4k9cipxmbhinf2v5z5h3qj5"; depends=[gplots pROC]; }; + switchde = derive2 { name="switchde"; version="1.22.0"; sha256="0mgif3d6pkhivk8yrjdp4xm6kad5vm9g18mvn617zd71zfqd902y"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; + synapsis = derive2 { name="synapsis"; version="1.2.0"; sha256="1m8js52l8spp3w40pypbha1ydgbjz0ypylk08gjxclw3jp9abwjy"; depends=[EBImage]; }; + synergyfinder = derive2 { name="synergyfinder"; version="3.4.0"; sha256="18z5gv73sz3hkxa3zdciwfbb1pl054mipvjs7mjhvz0s46w63pr8"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; + synlet = derive2 { name="synlet"; version="1.26.0"; sha256="0zygs6gskgddb68as4yh3bw1kjlsxk60rym1f6yxj5vzln0ka53c"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; + systemPipeR = derive2 { name="systemPipeR"; version="2.2.2"; sha256="1yybbff29gwv6rm0nw4yjw73bbl5prfj8gj4zky917smjfd459im"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; + systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.6.0"; sha256="0384wijbhqdrxyq11ma62613rxs6cccrqa3l38hhcx8pfnwgprnk"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; }; + systemPipeTools = derive2 { name="systemPipeTools"; version="1.4.0"; sha256="0zandgmzwj5b3hk8w60rmmc40hkpsvg9vynpix50hi81s8vwj26j"; depends=[ape DESeq2 dplyr DT GGally ggplot2 ggrepel ggtree glmpca magrittr pheatmap plotly Rtsne SummarizedExperiment tibble]; }; + tLOH = derive2 { name="tLOH"; version="1.4.0"; sha256="03ap5c7pznmflnlx7q9bwl8d64x68vz849ld6lxhm7j6wsva2c9m"; depends=[data_table dplyr GenomicRanges ggplot2 MatrixGenerics purrr scales VariantAnnotation]; }; + tRNA = derive2 { name="tRNA"; version="1.14.0"; sha256="140lpja0brw898is5xazxdz1h1agfzwwx9w63fhxacyx1ll43h41"; depends=[BiocGenerics Biostrings GenomicRanges ggplot2 IRanges Modstrings S4Vectors scales stringr Structstrings XVector]; }; + tRNAdbImport = derive2 { name="tRNAdbImport"; version="1.14.0"; sha256="1c3jmx3ddr7yiijpv08lzgk52r49g2ir4xayf65fzqb90ni6k04q"; depends=[BiocGenerics Biostrings GenomicRanges httr IRanges Modstrings S4Vectors stringr Structstrings tRNA xml2]; }; + tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.16.0"; sha256="1zfk4a4qm76ah2z0bmkl0h0xpbqfjlkgmiy478gi7xvnd5rm0gwy"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors stringr Structstrings tRNA XVector]; }; + tRanslatome = derive2 { name="tRanslatome"; version="1.34.0"; sha256="0pv11lrg0fsfpv933k7zjlqswb5zqqxx12cwrfkz91v3x3ivsbza"; depends=[anota Biobase DESeq2 edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd sigPathway topGO]; }; + tanggle = derive2 { name="tanggle"; version="1.2.0"; sha256="1r04qmxq9ww0ly4mzpkxqv7xyva3mqy02lh3vw13v4dp9d9zaf7c"; depends=[ape ggplot2 ggtree phangorn]; }; + target = derive2 { name="target"; version="1.10.0"; sha256="00dwbwzv6y9nfs1cc2jv39b0fcjcbzwfnqmv3zicwfq1lsa4z9mv"; depends=[BiocGenerics GenomicRanges IRanges matrixStats shiny]; }; + tenXplore = derive2 { name="tenXplore"; version="1.17.1"; sha256="1k8v0igw44c5fbj1dsjkda98v1c8y9sdw8mjarmy5axlrz3cpcbf"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; }; + ternarynet = derive2 { name="ternarynet"; version="1.40.0"; sha256="02r53h6224f8jwwvnv1n09s8i8akhq2qf562crq14m8qk5xw4scf"; depends=[BiocParallel igraph]; }; + terraTCGAdata = derive2 { name="terraTCGAdata"; version="1.0.0"; sha256="16sc6n1cgrxr425024k37vzy1n2pij8n7lzxq383r73wyp5z3zkc"; depends=[AnVIL BiocFileCache dplyr GenomicRanges MultiAssayExperiment RaggedExperiment readr S4Vectors TCGAutils tidyr]; }; + tidySingleCellExperiment = derive2 { name="tidySingleCellExperiment"; version="1.6.0"; sha256="0jpw14qvi184fdawhif6b32c3ljm1g5wwf0g0ii9r8y0cf7z4bnl"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr tidyselect ttservice]; }; + tidySummarizedExperiment = derive2 { name="tidySummarizedExperiment"; version="1.6.0"; sha256="15w62bwfllfhscyxs56am58qhmmyh1hmwjc9axlmvxa2k9pvishw"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang S4Vectors stringr SummarizedExperiment tibble tidyr tidyselect]; }; + tidybulk = derive2 { name="tidybulk"; version="1.8.0"; sha256="02dgny3zshn1g2lpr2s888yg230q6impi8dffr3x9c8yjak213xp"; depends=[dplyr GenomicRanges lifecycle magrittr preprocessCore purrr readr rlang scales stringi stringr SummarizedExperiment tibble tidyr tidyselect]; }; + tigre = derive2 { name="tigre"; version="1.50.0"; sha256="0a4nn8q6iz20xfpwjvdp387cc3w0wdd9rpn6p8gh3dkqh8wsnggd"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; }; + tilingArray = derive2 { name="tilingArray"; version="1.74.0"; sha256="17n30c0nybsqvmm920zfxfx82yz0afnv1p14jcrnhf3qi9ipdjna"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; }; + timeOmics = derive2 { name="timeOmics"; version="1.7.1"; sha256="0s3h8rk7k2s6fnac3v5m8hc2mmdnb4dvbld6ad1as9ac0nvz3521"; depends=[dplyr ggplot2 ggrepel lmtest magrittr mixOmics plyr propr purrr stringr tibble tidyr]; }; + timecourse = derive2 { name="timecourse"; version="1.68.0"; sha256="10gin2dmg955ksg5s81kahracf889vdzjkj1f5nk59bpdyps2ga0"; depends=[Biobase limma marray MASS]; }; + timescape = derive2 { name="timescape"; version="1.20.0"; sha256="0w7jbk49647hzx1ny8xa8mf5q8nyfdn92xmw4k4lm8d7w1xbjx75"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; }; + tkWidgets = derive2 { name="tkWidgets"; version="1.74.0"; sha256="0b7ic4sz8d93b4cp4idhcywc9j9y8dvamz5y4mm9p0xhn404s4k0"; depends=[DynDoc widgetTools]; }; + tomoda = derive2 { name="tomoda"; version="1.6.0"; sha256="032h10674vyp017jww0rfpgs8jn7kl5m9w36j3azzvjh5p04n9s7"; depends=[ggplot2 ggrepel RColorBrewer reshape2 Rtsne SummarizedExperiment umap]; }; + tomoseqr = derive2 { name="tomoseqr"; version="1.0.0"; sha256="0afxzfqllr1l8mhkv75wismhsb1ipsspws18x3gyx2cvwi3yz5mw"; depends=[animation BiocFileCache dplyr purrr readr shiny stringr tibble]; }; + topGO = derive2 { name="topGO"; version="2.48.0"; sha256="125r42ymk1irjmwk4sywjkcshs71s26p3zsvryfdvf56k5w162v6"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; }; + topconfects = derive2 { name="topconfects"; version="1.12.0"; sha256="0v1cq7gvbwdqxczmy5vrw8yqk7h1bvx3rils4pkv7w9nhqps5g4k"; depends=[assertthat ggplot2]; }; + topdownr = derive2 { name="topdownr"; version="1.18.0"; sha256="1qrjgbs2lh851d22bcl75574jnyc554aqqxb34zdnpvpwavaqaya"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; }; + trackViewer = derive2 { name="trackViewer"; version="1.32.0"; sha256="0mrn514509924bs36fbdkk45vid19ldpwfyknagb8jhqdkqdngry"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rcpp Rgraphviz rhdf5 Rsamtools rtracklayer S4Vectors scales]; }; + tracktables = derive2 { name="tracktables"; version="1.30.0"; sha256="0xv4n8avwls10dk2kn2mhjq69cfqkackdn1jdz85xq5z42qnkl10"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; }; + tradeSeq = derive2 { name="tradeSeq"; version="1.10.0"; sha256="0v9nqxrwa69qhmyaicn2vvs8haha4kzs93iqim306331vadp9qm0"; depends=[Biobase BiocParallel edgeR ggplot2 igraph magrittr MASS Matrix matrixStats mgcv pbapply princurve RColorBrewer S4Vectors SingleCellExperiment slingshot SummarizedExperiment tibble TrajectoryUtils viridis]; }; + transcriptR = derive2 { name="transcriptR"; version="1.24.0"; sha256="1zc6aasd5nzwl9jxr0rdriiq85adqdbfi5b9m3jyf69pa71sgy03"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; }; + transcriptogramer = derive2 { name="transcriptogramer"; version="1.18.0"; sha256="1zwyiabw3iagbp95q16pzwdx1i8w77ibqi5wawn1j046q9qi20fh"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; }; + transformGamPoi = derive2 { name="transformGamPoi"; version="1.2.0"; sha256="0nc2524yfq44zlfiv8nawaj83i04kpmrmr18jg81gjcya6n0xayq"; depends=[DelayedArray glmGamPoi HDF5Array Matrix MatrixGenerics Rcpp SummarizedExperiment]; }; + transite = derive2 { name="transite"; version="1.14.0"; sha256="0h6d9akl1amz0b0k6f39pfg8szd7z85lxicw2bzy74pfmcdig3an"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp scales TFMPvalue]; }; + transomics2cytoscape = derive2 { name="transomics2cytoscape"; version="1.6.1"; sha256="15a75mzbdzd8fm65mp7qpzwhgl0hy1r9ny02m97c4cm7qq0rl2hm"; depends=[dplyr KEGGREST purrr RCy3 tibble]; }; + traseR = derive2 { name="traseR"; version="1.26.0"; sha256="1saas8qiiir4hafshs8i8pbpj3rfnsngrfg9a4ryalnwnbqyh519"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; + traviz = derive2 { name="traviz"; version="1.2.0"; sha256="1y2gckk7nm1yb8qv1llkal3mzmdk11kgmdagflymhla4nx2gdgay"; depends=[Biobase ggplot2 mgcv princurve RColorBrewer rgl SingleCellExperiment slingshot SummarizedExperiment viridis]; }; + treeio = derive2 { name="treeio"; version="1.20.0"; sha256="1hc5m0b2qqxrh3z0inny2jizrpn9d4yn9pn3k1h18xb4ggyijyla"; depends=[ape dplyr jsonlite magrittr rlang tibble tidytree]; }; + treekoR = derive2 { name="treekoR"; version="1.4.0"; sha256="0sd1vk1hzvma0644p8wz4037gmm5wpf1d8n22fa0d5m7c97qijrl"; depends=[ape data_table diffcyt dplyr edgeR ggiraph ggplot2 ggtree hopach lme4 multcomp patchwork SingleCellExperiment tidyr]; }; + trena = derive2 { name="trena"; version="1.18.0"; sha256="02xhjy1nzjd7lgawqkn3vj3llg1fwl0nisapxmai7yl2lfajhia6"; depends=[AnnotationDbi biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMySQL RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 vbsr WGCNA xgboost]; }; + tricycle = derive2 { name="tricycle"; version="1.4.0"; sha256="0bjkajcz6xcfak6071d0ihakrvgf7s0pmkn6vqkjd6yxbfld7zln"; depends=[AnnotationDbi circular dplyr GenomicRanges ggnewscale ggplot2 IRanges RColorBrewer S4Vectors scater scattermore SingleCellExperiment SummarizedExperiment]; }; + trigger = derive2 { name="trigger"; version="1.42.0"; sha256="09gbchwpifx5dkmw3irshb63jl22fn2sxsj450krqjjq1gjq1xhx"; depends=[corpcor qtl qvalue sva]; }; + trio = derive2 { name="trio"; version="3.34.0"; sha256="1d6gwzx99np8yrsmqnn23s94ib6k41290sv2h4nmzblsidsimlbs"; depends=[LogicReg siggenes survival]; }; + triplex = derive2 { name="triplex"; version="1.36.0"; sha256="07yfm0vvrvw21hvdrprsw8crjb07hvz36w83avrqq16v3l64xgq8"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; + tripr = derive2 { name="tripr"; version="1.2.0"; sha256="0v5yqzh20ha7zbl3d8xl04gw3qq9mfpnggk4aw3k8ckqasii10q7"; depends=[config data_table dplyr DT golem gridExtra plot3D plotly plyr pryr RColorBrewer shiny shinyBS shinyFiles shinyjs stringdist stringr]; }; + tscR = derive2 { name="tscR"; version="1.8.0"; sha256="0i8d739xd39bvj05bx4x98nhpdl1mjsdsci1vdw6ri2kh7hrihji"; depends=[class cluster dplyr dtw GenomicRanges ggplot2 gridExtra IRanges kmlShape knitr latex2exp prettydoc RColorBrewer rmarkdown S4Vectors SummarizedExperiment]; }; + tspair = derive2 { name="tspair"; version="1.53.0"; sha256="04xxrm313mnknhc38vl1sx6hic2g1x1xaa5772qlc7ip957hz85k"; depends=[Biobase]; }; + ttgsea = derive2 { name="ttgsea"; version="1.4.0"; sha256="15kzy6ah7yz1ldx79g3z3n2ipfc842hg1l72ijcrsni47l6gs8ss"; depends=[data_table DiagrammeR keras purrr stopwords text2vec textstem tm tokenizers]; }; + tweeDEseq = derive2 { name="tweeDEseq"; version="1.42.0"; sha256="152alh46baz6kjfqsawyh74if4jnyqq4axxw7ihj4b4c79r5bq9g"; depends=[cqn edgeR limma MASS]; }; + twilight = derive2 { name="twilight"; version="1.72.0"; sha256="1s0xv8kh5mfwa9z3f5096bq99g8ncnygcih7xb0fpvj6knpp0w5k"; depends=[Biobase]; }; + twoddpcr = derive2 { name="twoddpcr"; version="1.20.0"; sha256="0gjsbn47a8rid73krlip1nczhwnfi85a7023pchc9j98y85lv8w9"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; }; + txcutr = derive2 { name="txcutr"; version="1.2.0"; sha256="016y2g0n1394n3ynfxszxsnh9874r1f1jy4yh9c48c3ivkp36nk1"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors]; }; + tximeta = derive2 { name="tximeta"; version="1.14.0"; sha256="1vq7x1sf5h8iwdalalbrybxzbq47s2ymb75himj5wkv77mgcivfl"; depends=[AnnotationDbi AnnotationHub BiocFileCache Biostrings ensembldb GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite Matrix S4Vectors SummarizedExperiment tibble tximport]; }; + tximport = derive2 { name="tximport"; version="1.24.0"; sha256="1cnra82pvwz79a1hkw0phc6aa3v43r5p4nx8xyx5wzmkd7rjkc8x"; depends=[]; }; + uSORT = derive2 { name="uSORT"; version="1.22.0"; sha256="1fq9zqa0kgdzvc0bhr60kqkl27b5y525czfm0w7qmbv3a832mhhd"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; + uncoverappLib = derive2 { name="uncoverappLib"; version="1.6.0"; sha256="0r0vgi7pq93vpw7mcqw96ixfgkhwllw16v20jsk3v27jx5gvr31c"; depends=[BiocFileCache BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 condformat DT EnsDb_Hsapiens_v75 EnsDb_Hsapiens_v86 GenomicRanges Gviz Homo_sapiens markdown openxlsx org_Hs_eg_db OrganismDbi processx rappdirs rlist Rsamtools S4Vectors shiny shinyBS shinycssloaders shinyjs shinyWidgets stringr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; + unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.32.0"; sha256="1skfs94a6bv05c844zf5vfqw1fbgxyppgdnckdbhxg2a2470a4wh"; depends=[BiocGenerics HTqPCR]; }; + universalmotif = derive2 { name="universalmotif"; version="1.14.0"; sha256="0n2msyyy1xhapkd66j4xwabg4qfd62l01p1nmafjwifnjsx45xvp"; depends=[BiocGenerics Biostrings ggplot2 IRanges MASS Rcpp RcppThread rlang S4Vectors yaml]; }; + updateObject = derive2 { name="updateObject"; version="1.0.0"; sha256="0ng927m9hrmwlnx02pm35b5173a0wx1b2k54gww9xc1pz9b5zp24"; depends=[BiocGenerics digest S4Vectors]; }; + variancePartition = derive2 { name="variancePartition"; version="1.26.0"; sha256="0wk1xql8b0gxyrqz9hs54xvmp7qdw9b8jnv88p4vgv061iwyk7wv"; depends=[aod Biobase BiocParallel doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS Matrix pbkrtest progress Rdpack reshape2 RhpcBLASctl rlang scales]; }; + vbmp = derive2 { name="vbmp"; version="1.64.0"; sha256="02xxvam2dmhhqvm30gxh2v16894qbqha1mc7bl78gq5sc067yr0n"; depends=[]; }; + velociraptor = derive2 { name="velociraptor"; version="1.6.0"; sha256="07hbrjqwlxpjrznd9jbv3psqgrsadpa626acgzc02wkl9vfgg5bc"; depends=[basilisk BiocGenerics BiocParallel BiocSingular DelayedArray Matrix reticulate S4Vectors scuttle SingleCellExperiment SummarizedExperiment zellkonverter]; }; + veloviz = derive2 { name="veloviz"; version="1.2.0"; sha256="0m9vhfqa9vv97ip7h1g0sv90127yhq7bp3rmdd753di66q2p0qd1"; depends=[igraph Matrix mgcv Rcpp RSpectra]; }; + vidger = derive2 { name="vidger"; version="1.16.0"; sha256="0kn06i2kb6drq4g5y1xx8wrw4fp5q9147d5mnfj0jvi5db7cmsav"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; }; + viper = derive2 { name="viper"; version="1.30.0"; sha256="0ii6fg0bzgnwfrhlvkh34c17xg2wpyqvb1hg1qsh7prv8dij4q0x"; depends=[Biobase e1071 KernSmooth mixtools]; }; + vissE = derive2 { name="vissE"; version="1.4.0"; sha256="01gw1cjm9nz804hw64vsk2jicb86p0dl1qrgkadnixxzcksgb3gz"; depends=[ggforce ggplot2 ggraph ggrepel ggwordcloud GSEABase igraph msigdb plyr RColorBrewer reshape2 scales scico textstem tidygraph tm]; }; + vsn = derive2 { name="vsn"; version="3.64.0"; sha256="1ja7vdjvgx671l57f9fzfn4vc6q7xzfmqs4krg2rdyfaaf531gqf"; depends=[affy Biobase ggplot2 lattice limma]; }; + vtpnet = derive2 { name="vtpnet"; version="0.36.0"; sha256="10sr9rpq5bb1a76wa4r80w01cm5wmijc83f0aq2idbw8qbvxn39c"; depends=[doParallel foreach GenomicRanges graph gwascat]; }; + vulcan = derive2 { name="vulcan"; version="1.18.0"; sha256="0f9gmypm1n3g0a7k76kkzyxa3pm3jsqyb75d1xf148gr1n0qqf2w"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq2 DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; }; + waddR = derive2 { name="waddR"; version="1.10.0"; sha256="15sg5912vvl3bhw1cfrk22r5azisp18dawipybj78rgzbqvrzga3"; depends=[arm BiocFileCache BiocParallel eva Rcpp RcppArmadillo SingleCellExperiment]; }; + wateRmelon = derive2 { name="wateRmelon"; version="2.2.0"; sha256="0adqyfabrvfcaj3mwp0rbqlcgpj92yb205cyhibbrs5gdr5ri4pv"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; }; + wavClusteR = derive2 { name="wavClusteR"; version="2.30.0"; sha256="04di095i9i19j9ppx8gdsk7n18vd02d4rjdi9d4a3p0xv05ihnb6"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr]; }; + weaver = derive2 { name="weaver"; version="1.62.0"; sha256="10d3pnrs26xmk2dpnfvkd5ngl9l5xcfcsch4za8jkissfs3w9y24"; depends=[codetools digest]; }; + webbioc = derive2 { name="webbioc"; version="1.68.0"; sha256="1g3srxsa2fqcn3r4wz4y19fwjmw3vawlcvdw6lbjdnvbgcafq1ah"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; }; + weitrix = derive2 { name="weitrix"; version="1.8.0"; sha256="0xkmh3k174jywrvaqanbbw4xinymx1fgds1n4i2qnv6bkdpcjfi1"; depends=[assertthat BiocGenerics BiocParallel Ckmeans_1d_dp DelayedArray DelayedMatrixStats dplyr ggplot2 glm2 limma purrr reshape2 RhpcBLASctl rlang S4Vectors scales SummarizedExperiment topconfects]; }; + widgetTools = derive2 { name="widgetTools"; version="1.74.0"; sha256="10w1s5h4za6ibmphvj145ir3lp22qgah2z8fvmipmf8ciq1jf86d"; depends=[]; }; + wiggleplotr = derive2 { name="wiggleplotr"; version="1.20.0"; sha256="0s128mm5w8n072k6j0fv1mxnxjpwisjp5lpz8a9z96cnn69bnr0i"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; }; + wpm = derive2 { name="wpm"; version="1.6.0"; sha256="12b3sf1xzxynv7c7r24rgzfzgznw3s00rwyg26f9c2agk8pz1cjq"; depends=[Biobase cli config dplyr DT ggplot2 golem logging RColorBrewer rlang shiny shinycustomloader shinydashboard shinyWidgets stringr SummarizedExperiment]; }; + wppi = derive2 { name="wppi"; version="1.4.0"; sha256="1008s39bb7sd261cy1vfgdah7bmhfw9qq322fh7g4wvpfw63ii9f"; depends=[dplyr igraph logger magrittr Matrix OmnipathR progress purrr RCurl rlang tibble tidyr]; }; + xcms = derive2 { name="xcms"; version="3.18.0"; sha256="0p2zd2728lj5q8y24gdfvsjijd6zl2i73hrcf017n32jq7vn71xm"; depends=[Biobase BiocGenerics BiocParallel IRanges lattice MassSpecWavelet MsCoreUtils MsFeatures MSnbase mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors SummarizedExperiment]; }; + xcore = derive2 { name="xcore"; version="1.0.0"; sha256="1czys3nbw1hzy0p6bblqa6qvp68xd7iifi2isw9dhsn2k4nkr0xf"; depends=[DelayedArray edgeR foreach GenomicRanges glmnet IRanges iterators magrittr Matrix MultiAssayExperiment S4Vectors]; }; + xmapbridge = derive2 { name="xmapbridge"; version="1.54.0"; sha256="1n3nxc4jwxf5z32i70sza52nyk29adhp8vc3hac7r5b8mbi6gg10"; depends=[]; }; + yamss = derive2 { name="yamss"; version="1.22.0"; sha256="1lcfxw73cxvpy3bnq28pxdy5128mpq5xklsa0mzxdjyqc4g55hy8"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; }; + yarn = derive2 { name="yarn"; version="1.22.0"; sha256="0z5202pqq02fwm8qf1g36004k7sv668s1xacbpr1cvw5sl452lbg"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; }; + zFPKM = derive2 { name="zFPKM"; version="1.18.0"; sha256="1h7g553rgb5mkmmsp8dyqqs9n9x17xmmcg3iijhb54nyrr2j1mji"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; }; + zellkonverter = derive2 { name="zellkonverter"; version="1.6.0"; sha256="19rc3cjwqpazrwq6hx0iqhy9irzwn4n830ninjr46wfqc74bknj0"; depends=[basilisk cli DelayedArray Matrix reticulate S4Vectors SingleCellExperiment SummarizedExperiment]; }; + zinbwave = derive2 { name="zinbwave"; version="1.18.0"; sha256="0vpz721sciw5b4ypxj5lj8p53gwkpfwlwkn6k3y8i65zg80p1g6i"; depends=[BiocParallel edgeR genefilter Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; + zlibbioc = derive2 { name="zlibbioc"; version="1.42.0"; sha256="0w0y9jixdk6akmasn55g9g0nhlh93hbca5bwx5w1fypnvqrqpxzv"; depends=[]; }; + ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.24.0"; sha256="1sp3f72rzlr822dxx42bswynrwwfx6f520hdhfdikqp13p2y4044"; depends=[ABAData data_table GOfuncR gplots gtools Rcpp]; broken = true; }; ALPS = derive2 { name="ALPS"; version="1.5.0"; sha256="1aydvzc6x0871iasij68xqdlhjyg69qbqxm0qh1q52w8gj2nyq3p"; depends=[assertthat BiocParallel ChIPseeker corrplot data_table dplyr genefilter GenomicRanges GGally gghalves ggplot2 ggseqlogo Gviz magrittr org_Hs_eg_db plyr reshape2 rtracklayer stringr tibble tidyr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; broken = true; }; Autotuner = derive2 { name="Autotuner"; version="1.7.0"; sha256="0k07gs6bnxs0894iqi1lhk96mifjcdf68bv4q9fjv50nzqpzqd8l"; depends=[assertthat Biobase cluster entropy MSnbase mzR RColorBrewer scales]; broken = true; }; CHETAH = derive2 { name="CHETAH"; version="1.9.0"; sha256="1nfz8zpkrghfh942cr8xwvrj0d47h1nbf3nv534mp7rii38v07j3"; depends=[bioDist corrplot cowplot dendextend ggplot2 gplots pheatmap plotly reshape2 S4Vectors shiny SingleCellExperiment SummarizedExperiment]; broken = true; }; @@ -2069,21 +2135,33 @@ in with self; { EasyqpcR = derive2 { name="EasyqpcR"; version="1.31.0"; sha256="0lb2px789668fr1gxghycy7lbdkpwmippv6xmmwws6rbanvfd6v4"; depends=[matrixStats plotrix plyr]; broken = true; }; FindMyFriends = derive2 { name="FindMyFriends"; version="1.23.0"; sha256="0xbhl6ljxb522r5062vv6xdziaaqkkwylmvlymvc5f1grjz0a4z9"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; broken = true; }; FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.23.0"; sha256="04lk2cahf6zqnhpzh0zwas4vmvaz4kcik9ri65bs9d9ximzjam91"; depends=[jsonlite RCurl XML]; broken = true; }; + GeneAnswers = derive2 { name="GeneAnswers"; version="2.36.0"; sha256="1f8q3hi913khyy1cc3yp2635gaik47alsqmhi0mi24cy340faplz"; depends=[annotate Biobase downloader Heatplus igraph KEGGREST MASS RBGL RColorBrewer RCurl RSQLite XML]; broken = true; }; GenoGAM = derive2 { name="GenoGAM"; version="2.11.0"; sha256="058qix2h0zm2k9csmbdhci2wqih3lyggjj591cqn0ls2nv7bnyvj"; depends=[BiocParallel Biostrings data_table DelayedArray DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges HDF5Array IRanges Matrix Rcpp RcppArmadillo rhdf5 Rsamtools S4Vectors sparseinv SummarizedExperiment]; broken = true; }; Herper = derive2 { name="Herper"; version="1.3.0"; sha256="038cavnbz7gvmv9mpnf88n8dzrg7yl306y68zsq5hpkrj6qax9vr"; depends=[reticulate rjson withr]; broken = true; }; - HiCBricks = derive2 { name="HiCBricks"; version="1.11.0"; sha256="12s01r9z569pp6amlvcs7fqmwivw9jb2ahnnyq6nzflsyn5277kl"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; broken = true; }; MSEADbi = derive2 { name="MSEADbi"; version="1.2.0"; sha256="1g1kg3nh7iwg5nrpmig6srw6as4yfwmbqn965pffrk0zp19llsbf"; depends=[AnnotationDbi Biobase DBI RSQLite]; broken = true; }; + MSGFgui = derive2 { name="MSGFgui"; version="1.28.0"; sha256="0dkj2nbv5xv4v4bbmf91av0ryh9pxdfp7fmbqlma4xyf1r7zmx4c"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; broken = true; }; + MSGFplus = derive2 { name="MSGFplus"; version="1.28.0"; sha256="1k0qm049gk4gjhd88zhxxrpc944r7ndq8dys08ai2kbaqignvb7y"; depends=[mzID ProtGenerics]; broken = true; }; MSstatsTMTPTM = derive2 { name="MSstatsTMTPTM"; version="1.1.2"; sha256="16qnddwhwhjjfr5akdrmp93gkxq2r41s82hb1blbz47lwbj5kaj5"; depends=[dplyr ggplot2 gridExtra MSstatsTMT Rcpp reshape2 stringr]; broken = true; }; MethCP = derive2 { name="MethCP"; version="1.7.0"; sha256="1smhwmrgckgivf6xfk54sz197cw1mar95chzkrfpf4wxw3jzbbkn"; depends=[BiocParallel bsseq DNAcopy DSS GenomeInfoDb GenomicRanges IRanges methylKit S4Vectors]; broken = true; }; + PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.22.0"; sha256="0rhx2jc5kc9bl00v16frh8b4075n0jqn4s37pkvqp3ypcbqws32d"; depends=[igraph jsonlite pcaMethods shiny]; broken = true; }; + ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.24.0"; sha256="0qs5hbx7pww7qxxaimp2xqvs3lwcd41ndls0xcvvlk7pnp4i4sk8"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDb MSnbase mzR RCurl]; broken = true; }; + RGalaxy = derive2 { name="RGalaxy"; version="1.38.0"; sha256="0vfsn8cj5c8n58ra1qz85gwmm1747lm3xdz17m20f73g8q78nymd"; depends=[Biobase BiocGenerics optparse roxygen2 XML]; broken = true; }; + RNASeqR = derive2 { name="RNASeqR"; version="1.12.0"; sha256="1f2rrk4lb8mawgy6pzkpdmjp85pl23mb89b45ay54jp28j16dgr5"; depends=[ballgown Biostrings clusterProfiler corrplot DESeq2 DOSE edgeR factoextra FactoMineR ggplot2 gridExtra org_Hs_eg_db org_Sc_sgd_db pathview PerformanceAnalytics pheatmap rafalib reshape2 reticulate Rsamtools stringr systemPipeR systemPipeRdata]; broken = true; }; RmiR = derive2 { name="RmiR"; version="1.49.0"; sha256="16nwh4a97qvyicm4f102xs52lx8cld0b80fykgil86kkd6v8zlja"; depends=[DBI RmiR_Hs_miRNA]; broken = true; }; + SLGI = derive2 { name="SLGI"; version="1.54.0"; sha256="03jwdq4k44rys3f773c6l985a6v1bacbdghw97p0qpwspmzra8rs"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice]; broken = true; }; ScISI = derive2 { name="ScISI"; version="1.65.0"; sha256="0q3bbfsink5d8xslhp129qwvlq5mdzw8zkv9msd0q8qmkclsbiz1"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; broken = true; }; SwimR = derive2 { name="SwimR"; version="1.29.0"; sha256="0n58x3i4k3icvhg8z60zlhpszv8bb9pain07nl9rszyvmpi71vg2"; depends=[gplots R2HTML signal]; broken = true; }; + TSRchitect = derive2 { name="TSRchitect"; version="1.20.0"; sha256="1v9zz8ny9rwkyz98cv49l9ilh68h8mvm2x44n8i8rvjayc50zi9i"; depends=[AnnotationHub BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges readxl Rsamtools rtracklayer S4Vectors SummarizedExperiment]; broken = true; }; XCIR = derive2 { name="XCIR"; version="1.7.0"; sha256="0n42pw01wv1sk06hby9kwijx6zwaw4lrlpsa0wlkrkf323slkllw"; depends=[biomaRt data_table ggplot2 IRanges readxl S4Vectors seqminer VariantAnnotation]; broken = true; }; affyPara = derive2 { name="affyPara"; version="1.51.0"; sha256="01165f84snc3ksk0ghw631i2l5jklp4n826jwy5926wvxy3zlwz0"; depends=[affy affyio aplpack snow vsn]; broken = true; }; + alsace = derive2 { name="alsace"; version="1.30.0"; sha256="17adr64g3l2syj0shi57nrvx105w7wrkiqm0qp3hwlk1ivmnadzn"; depends=[ALS ptw]; broken = true; }; coexnet = derive2 { name="coexnet"; version="1.15.0"; sha256="1h3l7rjk757qbddyg0p8l21h8z3i4n3ml295lmavszsm9knyc2fk"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; broken = true; }; - compEpiTools = derive2 { name="compEpiTools"; version="1.27.0"; sha256="0hk3yd7ql91wg9r24r57ybhs1nx6zbd5v199sv7xd91k980n2ay5"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; broken = true; }; dualKS = derive2 { name="dualKS"; version="1.53.0"; sha256="16cfcylmmcj8x2808529lbpm7qbbrxygic0jkaglhqcdxgrqw3rw"; depends=[affy Biobase]; broken = true; }; methyAnalysis = derive2 { name="methyAnalysis"; version="1.34.0"; sha256="05k3n7iy5ijidbnblbqqas8dsj8drwzbhyrbs8wl1ypkg51havi0"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; broken = true; }; - methylPipe = derive2 { name="methylPipe"; version="1.27.0"; sha256="0z2md9n1flzfsgsbzwffn4q6yfcjyj03bg1vi4phcknigbhg1viy"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; broken = true; }; perturbatr = derive2 { name="perturbatr"; version="1.13.0"; sha256="0ssk8cr42hibn917s2z2nzcdan54c7xiydypbi8f3g4w68q4ly31"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; broken = true; }; + phemd = derive2 { name="phemd"; version="1.10.0"; sha256="1n3xvw9x3600pwv2wk7mbgal0lr6zpkwziy0whlkdkxzbgy9xzaw"; depends=[Biobase BiocGenerics cluster cowplot destiny ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; broken = true; }; + predictionet = derive2 { name="predictionet"; version="1.40.0"; sha256="1f3ghlcfnls9mx2hbs923rdz7kn0wdhy2csp1y1286c5q5dybrgh"; depends=[catnet igraph MASS penalized RBGL]; broken = true; }; + scClassifR = derive2 { name="scClassifR"; version="1.2.0"; sha256="0p9l9q5ina0axrqvqn1y5wkfqi0nacxm3nm6ny34j53znv07b2zz"; depends=[ape caret data_tree dplyr e1071 ggplot2 kernlab pROC ROCR Seurat SingleCellExperiment SummarizedExperiment]; broken = true; }; + slinky = derive2 { name="slinky"; version="1.12.0"; sha256="05ywydvyz3jnzbhabhz1sd61hpy9nb22512zpbi48mv5wic1sv3v"; depends=[curl dplyr foreach httr jsonlite readr rhdf5 SummarizedExperiment tidyr]; broken = true; }; + tofsims = derive2 { name="tofsims"; version="1.22.0"; sha256="0da4843wbcr821yp8z3z4vd81qpm2lblckgd01fm89lmwj393z65"; depends=[ALS alsace KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; broken = true; }; } diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index 337b1dd0020..ce7e79afe6a 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -4,7 +4,7 @@ # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix { self, derive }: -let derive2 = derive { snapshot = "2022-04-08"; }; +let derive2 = derive { snapshot = "2022-05-15"; }; in with self; { A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; }; AATtools = derive2 { name="AATtools"; version="0.0.1"; sha256="08is383xhs2lc9wfffykcwqyl8mwcxfpk3lnvlpkp96hq9m9ikbf"; depends=[doParallel dplyr foreach magrittr]; }; @@ -51,9 +51,7 @@ in with self; { AGHmatrix = derive2 { name="AGHmatrix"; version="2.0.4"; sha256="1pvnv3fzxfdzjz9il0022k46kkcb57ypz31qn0br7mck64bkzsia"; depends=[Matrix zoo]; }; AGPRIS = derive2 { name="AGPRIS"; version="1.0"; sha256="0xlaz75d19adfq79sh5aa52bzpmjqawshay2a3vw9mq8l23z64if"; depends=[Matrix matrixcalc maxLik plyr rgdal sp spacetime spdep]; }; AGSDest = derive2 { name="AGSDest"; version="2.3.4"; sha256="140bqzgaagdyzgxsn998jw2sxak448i47xyacn2psfnps440gfjr"; depends=[ldbounds]; }; - AGread = derive2 { name="AGread"; version="1.1.1"; sha256="0ar0cnlaxxmvn2gdydmm9vr45xjhx06kky556d17l93k0xwfvzm3"; depends=[anytime binaryLogic data_table DescTools dplyr GGIR lubridate magrittr PAutilities Rcpp reshape2 rlang seewave stringr]; }; AHM = derive2 { name="AHM"; version="1.0.1"; sha256="00r1rn7d64a18rckbxvla5yapqv00p9ajxv72fx7s6p80kfal89w"; depends=[devtools dplyr glmnet Matrix mixexp plgp quadprog tibble tidyr]; }; - AHMbook = derive2 { name="AHMbook"; version="0.2.3"; sha256="0ygdxyliq9wmpmjgmq1wb6a1g9pv6jl0lzaz7545gzwn7nwdw1y7"; depends=[coda mvtnorm plotrix RandomFields raster sp spdep unmarked]; }; AHPhybrid = derive2 { name="AHPhybrid"; version="0.1.0"; sha256="1hf2ba52nim13jwkq857vnmnnb1yhgdz6kipqg3mmqrgz7kg52v1"; depends=[]; }; AICcmodavg = derive2 { name="AICcmodavg"; version="2.3-1"; sha256="1c2qqizssy7jvzkndlljazk28rjq5csgawzs43gv3s9qbahpslfh"; depends=[lattice MASS Matrix nlme survival unmarked VGAM xtable]; }; AID = derive2 { name="AID"; version="2.6"; sha256="029zwgz8mwskh8gpliadxvvnsvkf045ghryci7sacgw0m5gg0xfc"; depends=[ggplot2 MASS meta nortest psych stringr tseries]; }; @@ -61,19 +59,16 @@ in with self; { AIPW = derive2 { name="AIPW"; version="0.6.3.2"; sha256="1iqq665qigw9dmc62x2dz1nvrk8s65ph0a3k2p7mkznr9frshhi2"; depends=[future_apply ggplot2 progressr R6 Rsolnp SuperLearner]; }; ALDqr = derive2 { name="ALDqr"; version="1.0"; sha256="0gk8hxh4p0fi47sf1zsvvxxbzp38vzk60wh8hmc63phnjab6qkv4"; depends=[HyperbolicDist sn]; }; ALEPlot = derive2 { name="ALEPlot"; version="1.1"; sha256="0bakl8a7xda7vh9zsc66kkd5w5jmb5j28kfwpfq2ifvk2mrakr3w"; depends=[yaImpute]; }; - ALS = derive2 { name="ALS"; version="0.0.6"; sha256="1swrn39vy50fazkpf97r7c542gkj6mlvy8gmcxllg7mf2mqx546a"; depends=[Iso nnls]; }; ALSCPC = derive2 { name="ALSCPC"; version="1.0"; sha256="0ippxzq5qwb9dnpvm1kxhc0fxh83rs9ny5rcvd30w2bp632q9qdx"; depends=[]; }; ALSM = derive2 { name="ALSM"; version="0.2.0"; sha256="1g7zk8q462j4faq5wzzghkjc003ny6rj8hrymsgvh3fg3a72lvy3"; depends=[car leaps SuppDists]; }; ALTopt = derive2 { name="ALTopt"; version="0.1.2"; sha256="1nbbvniramajg6k83xqgx7r0abjrfja8zz0y3g3j8qmvbcqmjx13"; depends=[cubature lattice]; }; ALUES = derive2 { name="ALUES"; version="0.2.1"; sha256="12fayxz0cb8wibccgz62gzrbkwzw2y4xljixrh02i1lbfwgsky14"; depends=[Rcpp]; }; ALassoSurvIC = derive2 { name="ALassoSurvIC"; version="0.1.0"; sha256="0q02rz947bp6i7sbb5nzxq8ky74iprdnpbwnmnn7vg29vhca4b09"; depends=[Rcpp]; }; - AMAP_Seq = derive2 { name="AMAP.Seq"; version="1.0"; sha256="0z0rrzps6rm58k4m1ybg77s3w05m5zfya4x8ril78ksxsjwi3636"; depends=[]; }; - AMAPVox = derive2 { name="AMAPVox"; version="0.1.0"; sha256="1c91ghjyaxqc23bvq3n4drjpqskbnr32d988hsbph44ypj0n2acj"; depends=[data_table stringr]; }; + AMAPVox = derive2 { name="AMAPVox"; version="0.10.0"; sha256="0b1x0nd494l0s77ai73lragvv5yq3fn60nrlfjanx8daygxisqqf"; depends=[curl data_table dplyr rappdirs rvest stringr]; }; AMCP = derive2 { name="AMCP"; version="1.0.1"; sha256="14fbb2p4dbgi7i31xxavrldw4wnd4cjjh56ys63rivkswi1hhzj2"; depends=[]; }; AMCTestmakeR = derive2 { name="AMCTestmakeR"; version="1.0.0"; sha256="1vgncc61gmqhax2a7072jb36bzkycv80xqihkr5qs8jxnqqkndxd"; depends=[]; }; AMGET = derive2 { name="AMGET"; version="1.0"; sha256="18wdzzg5wr7akbd1iasa4mvmy44fb2n5gpghwcrx80knnicy3dxq"; depends=[]; }; AMModels = derive2 { name="AMModels"; version="0.1.4"; sha256="18h075bzk8s75b3zmjd0x8c6dpl40445d4kv8n0p4ldnx80b1aha"; depends=[unmarked]; }; - AMOEBA = derive2 { name="AMOEBA"; version="1.1"; sha256="1npzh3rpfnxd4r1pj1hm214sfgbw4wmq4ws093lnl7pvsl0q37xn"; depends=[rlecuyer snowfall spdep]; }; AMPLE = derive2 { name="AMPLE"; version="1.0.0"; sha256="1lcwwf41i0mkg2bv8z5mzrj6h3pa31h33mrmbxbndjgb3ivz2wf5"; depends=[ggplot2 markdown R6 RColorBrewer scales shiny shinyjs shinyscreenshot]; }; AMR = derive2 { name="AMR"; version="1.8.1"; sha256="1q08d44c9ilryn3wwwncn1bq606mcg406vxq0zy7r5h9chgxnpp9"; depends=[]; }; ANN2 = derive2 { name="ANN2"; version="2.3.4"; sha256="1izljhz3rkzq05dkvg9q3fdyj7q871j8lsky67d5r8ffpzm1lk3z"; depends=[ggplot2 Rcpp RcppArmadillo reshape2 testthat viridisLite]; }; @@ -89,12 +84,13 @@ in with self; { APCtools = derive2 { name="APCtools"; version="1.0.1"; sha256="1aq55a3glsqyp7gzly1nfaxxlyiq2ki6h9i5qwgz7dbni4vwggd4"; depends=[checkmate colorspace dplyr ggplot2 ggpubr knitr mgcv scales tidyr]; }; APFr = derive2 { name="APFr"; version="1.0.2"; sha256="1vax7rfccds6qz3bi6n1h3nzl9jnxpwk331wmpsbqlk23md3m4g4"; depends=[]; }; APIS = derive2 { name="APIS"; version="1.0.1"; sha256="1af82mixamllly7v1jfvn1anpm1pafkv5mshwp6nmc27vaq201z5"; depends=[doParallel foreach ggplot2 gridExtra]; }; - APML = derive2 { name="APML"; version="0.0.4"; sha256="1zvrl73fhq4lbxdjxg0kxl44qqc7692q3k05lrrz5bkajz4c4ikr"; depends=[dplyr dummies ggplot2 h2o performanceEstimation pROC survival]; }; + APML = derive2 { name="APML"; version="0.0.5"; sha256="1md9vryq2qf4cx3jrgh7p2j87qc8iil1cszw0vay5ylzaw4bz1hl"; depends=[dplyr fastDummies ggplot2 h2o performanceEstimation pROC survival]; }; APML0 = derive2 { name="APML0"; version="0.10"; sha256="1l6mw1mqb7qnsvfv9w6yydqjsrwrsrqx3bpifyp43cf2q71yx5gp"; depends=[Matrix Rcpp RcppEigen]; }; APPEstimation = derive2 { name="APPEstimation"; version="0.1.1"; sha256="1bg9ma4i3k3xdgyk2h4f368gqnczvlhvjw4114iznmrv1wl4g25c"; depends=[densratio]; }; APSIMBatch = derive2 { name="APSIMBatch"; version="0.1.0.2374"; sha256="0j44ijq1v1k60lka9nmw8m1jfjw7pidny9bvswqy5v82gzmwl29d"; depends=[]; }; APfun = derive2 { name="APfun"; version="0.1.6"; sha256="0j54pcjzr5f8xhvp41vrl0i1hchphnij6p87j16rawp21apvnxyd"; depends=[maptools raster rgdal sp withr]; }; APtools = derive2 { name="APtools"; version="6.8.8"; sha256="171aydyd7s8qll7djl4ysy596wxdf5wfwpqwfi14jjglc9r9qrrr"; depends=[cmprsk survival]; }; + AQEval = derive2 { name="AQEval"; version="0.4.5"; sha256="14i731bdr6yrdgl9zqlyw46yd5mnj0q3sqmqfqxcvs39lxkvm473"; depends=[dplyr ggplot2 ggtext loa lubridate mgcv openair purrr segmented strucchange tidyr]; }; AQLSchemes = derive2 { name="AQLSchemes"; version="1.7-1"; sha256="10j8qh7m975666ipgdvzrjiraqqb5rn8qj4w76s3ijl83y0v5j3v"; depends=[]; }; AQuadtree = derive2 { name="AQuadtree"; version="1.0.2"; sha256="1nq2k8dkviazh09pglgla7vgvxwgckkbwx20rs8q9k0xnmsz86yz"; depends=[dplyr sp]; }; AR = derive2 { name="AR"; version="1.1"; sha256="1wn4g2997c4vc3mzq2pv8ld0ryp0i78v4zlqqryvhshxgnz4f2pr"; depends=[DISTRIB]; }; @@ -110,23 +106,21 @@ in with self; { ARTP2 = derive2 { name="ARTP2"; version="0.9.45"; sha256="12nqxry2jkl1n07rbms38mrnp39cn00d0h272d9f1z5x883flv62"; depends=[data_table Formula]; }; ARTofR = derive2 { name="ARTofR"; version="0.4.1"; sha256="1dw9aascnqr5cbk8a862rlma94b39ndgkrhf826qf4k58y92nf5q"; depends=[bannerCommenter clipr rstudioapi shiny]; }; ARTool = derive2 { name="ARTool"; version="0.11.1"; sha256="16awxcncyhry0ygk8gdvlff787837rr8qsyg1pxd11w4v1llrqrf"; depends=[car dplyr emmeans lme4 magrittr plyr]; }; - ARpLMEC = derive2 { name="ARpLMEC"; version="2.1"; sha256="0fj5mcaqpvgcwb6zp8yc5747clm6js99r3lqx5d3536w6k0f51r0"; depends=[gmm lmec MASS Matrix mnormt MomTrunc mvtnorm numDeriv sandwich tmvtnorm TTmoment]; }; + ARpLMEC = derive2 { name="ARpLMEC"; version="2.3"; sha256="0iz5l390mzjikiw0gdij0f68w08mlz8zijp8crxh37q9mf4q251y"; depends=[expm gmm lmec MASS Matrix mnormt MomTrunc mvtnorm numDeriv relliptical sandwich tmvtnorm TTmoment]; }; ASGS_foyer = derive2 { name="ASGS.foyer"; version="0.3.1"; sha256="089c4vm629rni0dfgg3r2a9s9yisdx1qs2dwssg44qw1w4hf1f50"; depends=[sp]; }; ASIP = derive2 { name="ASIP"; version="0.4.9"; sha256="06f1nvy920vyx3bmdi77mwvfsn32xsfxaslhagnf1zh652vfkbwi"; depends=[raster rgdal stringr]; }; ASMap = derive2 { name="ASMap"; version="1.0-4"; sha256="0xnrl8jhbvbc789w5gc9dz7j7gzc7wsc94a3d2wdplrmxn186nrb"; depends=[fields gtools lattice qtl RColorBrewer]; }; - ASPBay = derive2 { name="ASPBay"; version="1.2"; sha256="0b1qpyvmj7z10ixrmdxp42bj9s72c1l9rihzmv9p58f12a5aznjz"; depends=[hexbin Rcpp RcppArmadillo]; }; ASSA = derive2 { name="ASSA"; version="2.0"; sha256="10r5406g6i0959k1zm5h9cbwqmnyf7zy80ahiqsyrapm3g5rphxg"; depends=[]; }; ASSISTant = derive2 { name="ASSISTant"; version="1.4.2"; sha256="1vh1glk83lg010v2fc289gr6xy0dzbrqcjfva2mmaymk6v78a1w5"; depends=[dplyr knitr magrittr mvtnorm R6]; }; ASSOCShiny = derive2 { name="ASSOCShiny"; version="0.1.0"; sha256="1g1ba9d5ywd3gbwjb36xnms8l15dg1vwc6r0nsb5adhpb602xsw1"; depends=[arules arulesViz dplyr plotly rmarkdown shiny shinyMatrix]; }; AST = derive2 { name="AST"; version="0.1.0"; sha256="0z5dw5qw0i61v4796ms7pp66f9y4ylxrcls31ixzcmkklh3rcnp3"; depends=[]; }; - ATAforecasting = derive2 { name="ATAforecasting"; version="0.0.56"; sha256="1gqqs0jf6wwiza0wncyymjigz5010c3i6rl8zlwvylgwpby1p9rj"; depends=[forecast Rcpp RcppArmadillo Rdpack seasonal stlplus stR timeSeries TSA tseries xts]; }; + ATAforecasting = derive2 { name="ATAforecasting"; version="0.0.57"; sha256="15ih8jmgp20iskgbn8v5gbbh3d724gmv0943lc09yvja7b6wxvba"; depends=[forecast Rcpp RcppArmadillo Rdpack seasonal stlplus stR timeSeries TSA tseries xts]; }; ATE = derive2 { name="ATE"; version="0.2.0"; sha256="1i46ivb7q61kq11z9v1rlnwad914nsdjcz9bagqx17vjk160mc0a"; depends=[]; }; ATNr = derive2 { name="ATNr"; version="1.0.1"; sha256="1ryh99yifldml6fpprz01lap1nzlifjb2w8wgnmx95byz7gayrm9"; depends=[deSolve Rcpp RcppArmadillo]; }; ATR = derive2 { name="ATR"; version="0.1-1"; sha256="0via7zm3byzbdgrfw351fqvx0g5cj2z31bqfwh7kr99nqgjh0dyn"; depends=[partykit]; }; ATbounds = derive2 { name="ATbounds"; version="0.1.0"; sha256="007gc9yjxwlhkb0mibxaa394xdiilfm8z6jbbqdn6wl986p07pg3"; depends=[mgcv]; }; ATmet = derive2 { name="ATmet"; version="1.2.1"; sha256="17lzb4qnxgvlwy5zaz250mb0c4ayk509700k8mj8zf4dgv51kxa3"; depends=[DiceDesign lhs metRology msm sensitivity]; }; AUC = derive2 { name="AUC"; version="0.3.2"; sha256="07xf47kypqbsg2mixmq6mnh4s89aqan9bgl6kfv6lbx8ajv2asw3"; depends=[]; }; - AUCRF = derive2 { name="AUCRF"; version="1.1"; sha256="00d7jcg2dyvf7sc9w7vxxd85m7nsbcmfqsavrv236vxfpfc9yn7i"; depends=[randomForest]; }; AUtests = derive2 { name="AUtests"; version="0.99"; sha256="0ima350mjlqvij6f9xy6wfcibvlji7nh0prpqngj7apn82ri4m2k"; depends=[logistf]; }; AWR = derive2 { name="AWR"; version="1.11.189-1"; sha256="1imvpmq6br0z7l67w66a5s1ylbv6xvypj0wc09bmjy7sapdmkn4x"; depends=[rJava]; }; AWR_Athena = derive2 { name="AWR.Athena"; version="2.0.7-0"; sha256="1j9bqhyk0jzry4g379ml65gwxlszn7pjif1dywgns98jbry8mavh"; depends=[rJava RJDBC]; }; @@ -137,16 +131,15 @@ in with self; { AcceptanceSampling = derive2 { name="AcceptanceSampling"; version="1.0-8"; sha256="1ja1g0v8qvf7yj81x37wc6i7fkwpc573756jgvazazi8yf1gm12p"; depends=[]; }; AcousticNDLCodeR = derive2 { name="AcousticNDLCodeR"; version="1.0.2"; sha256="1fgzgwanpv2pzy74xdk3hamc44p8qch467wh163dxby8jr9ik0sb"; depends=[seewave tuneR zoo]; }; AcrossTic = derive2 { name="AcrossTic"; version="1.0-3"; sha256="03180h79jhjd66ibrnsfp3yyp2jlfysp7cymw46phzj2palghsc0"; depends=[lpSolve treeClust]; }; - ActCR = derive2 { name="ActCR"; version="0.2.0"; sha256="1jjkmw0pwr8xlmhiw3wpyjfmi2xcx569zvp797ywvjk6rvipzw52"; depends=[cosinor cosinor2 dplyr minpack_lm zoo]; }; + ActCR = derive2 { name="ActCR"; version="0.3.0"; sha256="1w3xkq3wanpa2j3rfzzdvad2r3vzzvp76kp56mh2s07p3xql6rv0"; depends=[cosinor cosinor2 dplyr minpack_lm zoo]; }; ActFrag = derive2 { name="ActFrag"; version="0.1.1"; sha256="08r3gwjz4fkyy85dxqix0ffm5xyq45032qv3snnzxnlqxslxbqn1"; depends=[accelerometry dplyr ineq survival tidyr]; }; ActiveDriver = derive2 { name="ActiveDriver"; version="1.0.0"; sha256="10c7ga48fwvpd5mc4dqiyw4kc2l0iz5qn4hg7xk15r1qmm5rsipa"; depends=[MASS]; }; ActiveDriverWGS = derive2 { name="ActiveDriverWGS"; version="1.1.2"; sha256="13b5yazgv9kckcp6gck183mh1m0q8lc5ixagmcy9s8kv2wz7wq45"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; - ActivePathways = derive2 { name="ActivePathways"; version="1.0.4"; sha256="1prhwx0nnwy2q62l2r0z31mhk4mq6xdr6mjihdlwpwgwq4rfi60y"; depends=[data_table ggplot2]; }; + ActivePathways = derive2 { name="ActivePathways"; version="1.1.0"; sha256="0zbrgz91mlik7j8j11wsdswqqqfsijj8jkgd5fx1ar3mc6rqsmbg"; depends=[data_table ggplot2]; }; ActivityIndex = derive2 { name="ActivityIndex"; version="0.3.7"; sha256="1zj2b6x31a1kxl80rarmkrlm7ack4154mrkbqs3fpi48zpmjbgd5"; depends=[data_table matrixStats R_utils]; }; AcuityView = derive2 { name="AcuityView"; version="0.1"; sha256="0f0iclmnwdc8ixiiai4svk4x1g3pjy7dhm3cm58fv6ckx12d3d2l"; depends=[fftwtools imager plotrix]; }; AdMit = derive2 { name="AdMit"; version="2.1.9"; sha256="0dlmqpwqfhhc4z2xr44f00xsg0hbmw2c5z2d4pbifv36jlrdxbip"; depends=[mvtnorm]; }; AdaSampling = derive2 { name="AdaSampling"; version="1.3"; sha256="1c8dh8lxyb076317n4qk2g3qv5j4mc1dszbh3k1p2b0nxiprqk5i"; depends=[caret class e1071 MASS]; }; - AdapEnetClass = derive2 { name="AdapEnetClass"; version="1.2"; sha256="01k3mj4g1ckbng7wkzzn9h0k9yf01cpnnkly0sjda574c5jhj0rc"; depends=[glmnet imputeYn lars quadprog]; }; AdapSamp = derive2 { name="AdapSamp"; version="1.1.1"; sha256="1jayjrsiib2ij4rxxj59g71r3xhzl5yqh0lhi8k6cfy03i7dkvis"; depends=[pracma]; }; AdaptFitOS = derive2 { name="AdaptFitOS"; version="0.68"; sha256="0hcmqiczb03377msz1m75nnpa6wc6zfgpz3cp0qpc9msdl1y83hh"; depends=[MASS mgcv nlme SemiPar]; }; AdaptGauss = derive2 { name="AdaptGauss"; version="1.5.6"; sha256="076jjnqp4ayq4kh95qns4kfzfvl6mjllhsq6hfp66bww7w976xxh"; depends=[DataVisualizations pracma Rcpp shiny]; }; @@ -154,7 +147,6 @@ in with self; { AdequacyModel = derive2 { name="AdequacyModel"; version="2.0.0"; sha256="0amp6ic1wylk24sp9wpx3ci38njj7b9qjqfp89j39hkl6kc1q7sq"; depends=[]; }; AdhereR = derive2 { name="AdhereR"; version="0.7.0"; sha256="14lggmyzj4csjh559153ay2xhxqz31znn6a2xbk2jdhk64sa0hxb"; depends=[data_table jpeg lubridate png rsvg webp]; }; AdhereRViz = derive2 { name="AdhereRViz"; version="0.2.0"; sha256="118gji5clqc62nd05n2cl6p7jamljk633f5j5wxzbzfalrgdwic2"; depends=[AdhereR clipr colourpicker data_table DBI highlight knitr lubridate manipulate RMariaDB RSQLite rsvg scales shiny shinyjs shinyWidgets V8 viridisLite]; }; - AdjBQR = derive2 { name="AdjBQR"; version="1.0"; sha256="14437pyz9v09ighwqvy1lcw0vfp2gaqzs9nzrb1gkfbb8ndzjw7k"; depends=[coda MHadaptive quantreg survival]; }; AdvBinomApps = derive2 { name="AdvBinomApps"; version="1.0"; sha256="1cnmn6c2dyl8qfl7g5sqwbjb52psqxzrj1mbm06zak2y1j7j8f49"; depends=[GenBinomApps rootSolve]; }; AdvDif4 = derive2 { name="AdvDif4"; version="0.7.18"; sha256="1xdbk7w55cb2fh0mqlyrkdpnglrs55kyvvp32anvf2nw3ssrfmy7"; depends=[]; }; AdvancedBasketballStats = derive2 { name="AdvancedBasketballStats"; version="1.0.1"; sha256="0wwqnijhz2sa3pcf8mjidw7m4awqgbsn4sgly93zyspb5fv7yblk"; depends=[]; }; @@ -163,7 +155,7 @@ in with self; { AggregateR = derive2 { name="AggregateR"; version="0.1.1"; sha256="1s2q888bqx6ilisv5s4g8ryja97nz6cz4ycm4sw1i63l5wjrwljc"; depends=[data_table NCmisc tibble]; }; AgreementInterval = derive2 { name="AgreementInterval"; version="0.1.1"; sha256="1bvinzylvsaipa8mq15f45b6h37znavlrdl0rbrx1pqw52r7z8kv"; depends=[psych]; }; AgroR = derive2 { name="AgroR"; version="1.2.9"; sha256="1bpmnk57k1kmdhplrw5klfjwd3pfh2z42pspv37bm8055gqlpyzs"; depends=[cowplot crayon drc dunn_test emmeans ggplot2 ggrepel lme4 lmtest MASS multcomp multcompView nortest RColorBrewer]; }; - AgroReg = derive2 { name="AgroReg"; version="1.2.2"; sha256="1f3h5ydq6wwb8g6zs7l8c3jbwjlz1f75wq4x4q6xqnrcbbrv2z3f"; depends=[boot broom dplyr drc egg ggplot2 minpack_lm rcompanion]; }; + AgroReg = derive2 { name="AgroReg"; version="1.2.4"; sha256="0ffa65y1liggcys1ixczqlywmslbczc29y22ynrq5h921hvh65j0"; depends=[boot broom dplyr drc egg ggplot2 minpack_lm rcompanion]; }; AgroTech = derive2 { name="AgroTech"; version="1.0.1"; sha256="1r04ns77axjm1nfhxbdq2zwr8gkbxrxblh9kicpv8jznc7ngb8mi"; depends=[crayon ggplot2 ggrepel gridExtra lmtest nortest readxl xlsx]; }; AhoCorasickTrie = derive2 { name="AhoCorasickTrie"; version="0.1.2"; sha256="0zh3y5jd8m0xbj6lqr01zvwj9qd1xr3iq7vd6sgr3g3qh4kqm5pq"; depends=[Rcpp]; }; AirMonitor = derive2 { name="AirMonitor"; version="0.2.2"; sha256="1pjr0cv8p4wh1r42dclarxbbd4iiwrv8zn6igdkr19829k1airkw"; depends=[dplyr dygraphs leaflet lubridate magrittr MazamaCoreUtils MazamaTimeSeries readr rlang stringr tidyselect xts]; }; @@ -171,10 +163,9 @@ in with self; { Ake = derive2 { name="Ake"; version="1.0"; sha256="1dj598xfdyjqvysc39a0d5gizgk367c5lkddmwmsqa8zjmvpr15a"; depends=[]; }; AlgDesign = derive2 { name="AlgDesign"; version="1.2.0"; sha256="0ammlg148gk0p24fh700116nd66636np0jb1wwh0axq5jphwk1pz"; depends=[]; }; AlgebraicHaploPackage = derive2 { name="AlgebraicHaploPackage"; version="1.2"; sha256="1krm5cx609sv2p0g3xm5jaiqs9li06v717lw7ywjvx7myc9x4c07"; depends=[]; }; - AllPossibleSpellings = derive2 { name="AllPossibleSpellings"; version="1.1"; sha256="0ksfm2pfjka3yjgcd257v7sns1niaylsfxvhhh2jwdi016cpdw10"; depends=[]; }; AlleleRetain = derive2 { name="AlleleRetain"; version="2.0.2"; sha256="0b6h5giskqbjbrk8nf29i75wrhxsjw1c87laiqzrpbp9n717bl20"; depends=[]; }; AlleleShift = derive2 { name="AlleleShift"; version="1.0-2"; sha256="0pmjh5nq67fxnwlszp5rlmnmzg4gdjkr9dzaz6b0p7vh2cfy9m45"; depends=[adegenet BiodiversityR vegan]; }; - Allspice = derive2 { name="Allspice"; version="1.0.3"; sha256="1l11alczi3bq8l9np4wzwf19sfnkqpbllqw54mx30py7qz6p1ng3"; depends=[]; }; + Allspice = derive2 { name="Allspice"; version="1.0.4"; sha256="0w5rqy47ksqxgl9j8ylzv4ml31sh04v46vf2rqqh9qswv706p1db"; depends=[]; }; AlphaPart = derive2 { name="AlphaPart"; version="0.9.3"; sha256="0v1cv55lw1r2nr6b68h0d3f5j7x4rjbmd78d45h005hhr1lss8fp"; depends=[directlabels dplyr gdata ggplot2 magrittr pedigree Rcpp reshape]; }; AlphaSimR = derive2 { name="AlphaSimR"; version="1.1.2"; sha256="0pc3byi19ydlnmddgc76gdqgvlyw7ixa3k55471x8kxnz22fhcx1"; depends=[BH R6 Rcpp RcppArmadillo]; }; Amelia = derive2 { name="Amelia"; version="1.8.0"; sha256="0plrnmlwn91bmrx8ip83nqb15ykjxjl6m49788sinq5cinkdbh9y"; depends=[foreign Rcpp RcppArmadillo]; }; @@ -196,7 +187,6 @@ in with self; { AnnuityRIR = derive2 { name="AnnuityRIR"; version="1.0-0"; sha256="0yvfqzwhm5nhywfhzkxkfm07c0qi6z21j1cdaypz89qn567aj1d9"; depends=[actuar EnvStats fitdistrplus mc2d tseries]; }; AntAngioCOOL = derive2 { name="AntAngioCOOL"; version="1.2"; sha256="1krwms0y3xppc2y4m0az51wcbh4jq7mlr0jwinp66w8gh4k3qnp2"; depends=[caret rJava rpart RWeka]; }; AntMAN = derive2 { name="AntMAN"; version="1.1.0"; sha256="118jhjjfnp23kbkir66rdvlzsvms316zwr2r5msrjrb3nd8lz5va"; depends=[bayesplot GGally mcclust mvtnorm Rcpp RcppArmadillo Rdpack salso]; }; - AntWeb = derive2 { name="AntWeb"; version="0.7"; sha256="1ykfg3zzjdvjppr2l4f26lx00cn5vaqhhz1j1b5yh113ggyl40qw"; depends=[assertthat httr leafletR plyr rjson]; }; AnthropMMD = derive2 { name="AnthropMMD"; version="3.1.0"; sha256="10ms5akc2r9dmcm8dd8bn7qn0bq71c270yhs61981n4mxsvgjmnr"; depends=[plotrix scatterplot3d shiny smacof]; }; Anthropometry = derive2 { name="Anthropometry"; version="1.17"; sha256="0vxjlzxv16bygw8n57f25msq5bd1dydg41my92ximah0nzzvbg41"; depends=[archetypes biclust cluster depth FNN ICGE nnls rgl shapes]; }; AntibodyTiters = derive2 { name="AntibodyTiters"; version="0.1.18"; sha256="000pxpkxwfaynmlr8xpbnkck2q61ym281ykxq88mrscqgyimp40k"; depends=[DescTools openxlsx]; }; @@ -214,7 +204,7 @@ in with self; { ArchaeoPhases_dataset = derive2 { name="ArchaeoPhases.dataset"; version="0.2.0"; sha256="0yffzc9jmyiil3p0bvf0fpq64mn55swcnizi3bgsl44d4j93y68q"; depends=[]; }; Arothron = derive2 { name="Arothron"; version="2.0.3"; sha256="0rb1n9pmp7q2wdihn26kbpyvyznlk8mrs8c26l1ar4q29jw44rw4"; depends=[abind alphashape3d compositions doParallel foreach geometry Morpho rgl Rvcg stringr vegan]; }; AsioHeaders = derive2 { name="AsioHeaders"; version="1.16.1-1"; sha256="0hp08v6if476745v2mk9k2sp1ikiac94fcnp8v9jdcyx954fqqlq"; depends=[]; }; - AssetAllocation = derive2 { name="AssetAllocation"; version="0.1.0"; sha256="0b0hh0kgr2nm7p4hilh7n56d1x7yqlqmgbcs782vypkj1g4dg01p"; depends=[PerformanceAnalytics quantmod xts zoo]; }; + AssetAllocation = derive2 { name="AssetAllocation"; version="1.0.0"; sha256="02r9a21696y1gj5qw01jddnyda6hm962l1am7igrqyywh05canch"; depends=[NMOF PerformanceAnalytics quantmod riskParityPortfolio RiskPortfolios xts zoo]; }; AssetCorr = derive2 { name="AssetCorr"; version="1.0.4"; sha256="0r98li2lxhfap1hn6h0l78phpm9m1nlcqhwzpq0ahhw0b1rd4qkf"; depends=[boot ggplot2 knitr mvQuad mvtnorm numDeriv qpdf Rdpack VineCopula]; }; AssetPricing = derive2 { name="AssetPricing"; version="1.0-3"; sha256="199ygwfddpzxnj388gxkn7xyhnvjr24f5jg4lnydh0z7pb96pm5r"; depends=[deSolve polynom]; }; AssocAFC = derive2 { name="AssocAFC"; version="1.0.2"; sha256="1rjiiir472dnr15xyvpn81s62nf01gl70khr8mrni65ssp5m30fb"; depends=[CompQuadForm]; }; @@ -222,8 +212,9 @@ in with self; { AssotesteR = derive2 { name="AssotesteR"; version="0.1-10"; sha256="0aysilg79vprcyjirqz6c5s1ry1ia92xik3l38qrw1gf3vfli9cw"; depends=[mvtnorm]; }; AsthmaNHANES = derive2 { name="AsthmaNHANES"; version="1.1.0"; sha256="106c6fh20s98fzixs4jpa4d413himrfg31rzwsxp72yldqxg70fx"; depends=[]; }; AsyK = derive2 { name="AsyK"; version="1.5.5"; sha256="0mr09gfxq2xsdrh7h28fkczhs44m367gf7zj09kc5lc5zwd9fs83"; depends=[DELTD]; }; + AsymmetricSORDs = derive2 { name="AsymmetricSORDs"; version="1.0.0"; sha256="0a6ika2vlnklbsr7lmihysbhzzc5za2aw77iw6pc19cw6mba6mpy"; depends=[]; }; AsynchLong = derive2 { name="AsynchLong"; version="2.1"; sha256="111kg1cacqlz4df1lnijybnrifjscjm78ji9p0ia615gacvdcfxa"; depends=[]; }; - AtmChile = derive2 { name="AtmChile"; version="0.2.1"; sha256="1f4csk8qa6pimyhycnbd7jyj85gzadcxlfq8bfmjrs7rqydx7bqh"; depends=[data_table DT lubridate openair plotly shiny shinycssloaders]; }; + AtmChile = derive2 { name="AtmChile"; version="1.0.0"; sha256="148m88ns9zyy529gkfksyc1909jya7bpv0cmryzi3wy15m8mfwgs"; depends=[data_table DT lubridate openair plotly shiny shinycssloaders]; }; AtmRay = derive2 { name="AtmRay"; version="1.31"; sha256="162078jd032i72sgaar9hqcnn1lh60ajcqpsz4l5ysxfkghcxlh8"; depends=[]; }; AugmenterR = derive2 { name="AugmenterR"; version="0.1.0"; sha256="0hi501p8ksaqzc9dq16dbmkz50kakgw3k0awdkbpci5can2sqvfl"; depends=[]; }; AurieLSHGaussian = derive2 { name="AurieLSHGaussian"; version="0.2.0"; sha256="0dzwqv396inbx4r6758vr4gip1y42ahavspadgm4xhafvipg73rb"; depends=[flexclust igraph lsa reshape2 stringdist]; }; @@ -231,7 +222,7 @@ in with self; { AutoDeskR = derive2 { name="AutoDeskR"; version="0.1.3"; sha256="1n7c8ris8b517bs1wahpvrhwfbvn2q4jbq01kgiv9lfmkjckzfkc"; depends=[httr jsonlite shiny]; }; AutoPipe = derive2 { name="AutoPipe"; version="0.1.6"; sha256="0bzllh92fgsmz79lh6m2f10vsx5qng4l7bwbwkp2kzwnncy7cq63"; depends=[annotate cluster clusterProfiler ConsensusClusterPlus fgsea msigdbr org_Hs_eg_db pamr RColorBrewer Rtsne siggenes]; }; AutoSEARCH = derive2 { name="AutoSEARCH"; version="1.5"; sha256="1s2ldhxijd8n9ba78faik6gn4f07pdzksy0030pqyafxlr3v1qdj"; depends=[lgarch zoo]; }; - AutoScore = derive2 { name="AutoScore"; version="0.2.0"; sha256="0rj8ksmj4yw9xsapz73b4gf46r6is1psaxgvmb9ja0vim5m9cj38"; depends=[ggplot2 knitr pROC randomForest tableone]; }; + AutoScore = derive2 { name="AutoScore"; version="0.3.0"; sha256="1j9ajmgdp1d55g9zqxcfycxshdwi2hhp706cgzqxdl1jcmhxsn97"; depends=[ggplot2 knitr pROC randomForest rpart tableone]; }; AutoStepwiseGLM = derive2 { name="AutoStepwiseGLM"; version="0.2.0"; sha256="0wwi8hg2q1zkf28rq7bj0f9fcxc5hj59hkmk0gl9p8i3rghlyrms"; depends=[caret formula_tools]; }; Autoplotprotein = derive2 { name="Autoplotprotein"; version="1.1"; sha256="13mxqmhhdiq7mz4m6nx39dsq7x3bm8fsgskswx48vsq6x2k6byxa"; depends=[ade4 plotrix plyr seqinr XML]; }; AutoregressionMDE = derive2 { name="AutoregressionMDE"; version="1.0"; sha256="1dmg0q4sp2d2anzhw2my8xjhpyjsx0kf7r202q5bkw8yr57jnhvr"; depends=[]; }; @@ -254,23 +245,22 @@ in with self; { AzureVision = derive2 { name="AzureVision"; version="1.0.2"; sha256="0a4lnj60577bxy5vyd7yqji984kgwpwd4zykxz2d060r8l31rf42"; depends=[AzureCognitive AzureRMR httr]; }; BACCO = derive2 { name="BACCO"; version="2.0-9"; sha256="0i1dnk0g3miyv3b60rzgjjm60180wxzv6v2q477r71q74b0v0r1y"; depends=[approximator calibrator emulator]; }; BACCT = derive2 { name="BACCT"; version="1.0"; sha256="0bpm4l27vbblzi2hhfbjw2af3ic2jbnyghkvchpq8ww43k8068iv"; depends=[ggplot2 reshape2 rjags]; }; - BACprior = derive2 { name="BACprior"; version="2.0"; sha256="1z9dvjq4lr99yp6c99bcv6n5jiiwfddfz4izcpfnnyvagfgizr8p"; depends=[boot leaps mvtnorm]; }; - BAEssd = derive2 { name="BAEssd"; version="1.0.1"; sha256="04wkhcj4wm93hvmfnnzryswaylnxz5qsgnqky9lsx4jqhvg340l6"; depends=[mvtnorm]; }; + BACprior = derive2 { name="BACprior"; version="2.1"; sha256="0kdbz4fv5k77q5c05inqaqyxj0lpljh8yiyzh0hjm0wd0wif9rih"; depends=[boot leaps mvtnorm]; }; BAGofT = derive2 { name="BAGofT"; version="1.0.0"; sha256="0lvjygnphb2d5cammmswlnyn77vmy3k46r8hh8f3mfr7i68gcdvz"; depends=[dcov randomForest]; }; BALCONY = derive2 { name="BALCONY"; version="0.2.10"; sha256="1wfy0dmwfzd9jp6g92ld8jqzx97grgq4h6dy4y5063vfd9i4slwx"; depends=[Biostrings dplyr progress readr Rpdb scales seqinr]; }; BALLI = derive2 { name="BALLI"; version="0.2.0"; sha256="0qmjwpj56n07dvjwfknqvc02f0y5mlwh2yz4lrw7c4wqgrckcpgi"; depends=[edgeR limma MASS]; }; BAMBI = derive2 { name="BAMBI"; version="2.3.3"; sha256="0v4rlsam7l3bdq2q7cmg1w2y4m1sj0ab2r2da76yq8rimch00q8g"; depends=[bridgesampling coda future_apply gtools label_switching lattice loo mvtnorm numDeriv qrng RColorBrewer Rcpp RcppArmadillo scales]; }; - BAMMtools = derive2 { name="BAMMtools"; version="2.1.8"; sha256="1ply8cj8sh8fn958g52i88gzyify79if41882cmks58diglpi0g5"; depends=[ape gplots Rcpp]; }; + BAMMtools = derive2 { name="BAMMtools"; version="2.1.9"; sha256="16bqk33pg0yb7fgsdvgbl2nh5jfppmykrfbf3cnc5krkl7cdj3br"; depends=[ape gplots Rcpp]; }; BANOVA = derive2 { name="BANOVA"; version="1.2.0"; sha256="0zyfgcx6wxrl9vgdpbzcs8pb6irmyagknjkcl1x30pzlj4dlx3kg"; depends=[coda rjags rstan runjags]; }; BARIS = derive2 { name="BARIS"; version="1.1.3"; sha256="1ccwxc7s1qk9zcs546kkpwzv26rxswrydnblvg4b8vbm5790n0gv"; depends=[checkmate data_table downloader dplyr glue httr janitor jsonlite magrittr memoise miniUI rgdal rio rstudioapi sf shiny stringi stringr XML]; }; BART = derive2 { name="BART"; version="2.9"; sha256="1yzwiyjc2gq2vvw5z2psmyqbbb1kq0xvsb0zingcn8qikw45mm5m"; depends=[nlme nnet Rcpp survival]; }; - BAS = derive2 { name="BAS"; version="1.6.0"; sha256="01qmh49k5k6sidy3k5xx3cy3vmj8f59znd4z2jn0sqjzzngyxypg"; depends=[]; }; + BAS = derive2 { name="BAS"; version="1.6.2"; sha256="0d8sjg8mgjky41mx8r7dhcxrx6a392dywb6p9my2qbfrsj9pzz7c"; depends=[]; }; BASIX = derive2 { name="BASIX"; version="1.1"; sha256="18dkvv1iwskfnlpl6xridcgqpalbbpm2616mvc3hfrc0b26v01id"; depends=[]; }; BASS = derive2 { name="BASS"; version="1.2.2"; sha256="14zimfdkpsil22n1z4ldpi9smmja5kf7qqlklr5sr7y5avnh0hd9"; depends=[hypergeo truncdist]; }; BASiNET = derive2 { name="BASiNET"; version="0.0.4"; sha256="0pmn4znqhpav729ai7zr027a7sx6bz2lmlk086crmwm1fnwipqq4"; depends=[Biostrings igraph randomForest rJava rmcfs RWeka]; }; BASiNETEntropy = derive2 { name="BASiNETEntropy"; version="0.99.2"; sha256="1vls83b7yvbckw11n63yiss0dc852h807br8p1l49zhsq977sv4n"; depends=[Biostrings igraph randomForest]; }; BAT = derive2 { name="BAT"; version="2.8.1"; sha256="0bf843r4mycxg7bx64bxz915zblyq0i9205f7kl3rgwi4bsxzymg"; depends=[ape geometry hypervolume MASS nls2 raster vegan]; }; - BAYSTAR = derive2 { name="BAYSTAR"; version="0.2-9"; sha256="0crillww1f1jvhjw639sf09lpc3wpzd69milah143gk9zlrkhmz2"; depends=[coda mvtnorm]; }; + BAYSTAR = derive2 { name="BAYSTAR"; version="0.2-10"; sha256="1yn79nkwi33d6qsiklay3ngk26dvi44lap59zp545gidvn9fbir6"; depends=[coda mvtnorm]; }; BAwiR = derive2 { name="BAwiR"; version="1.2.7"; sha256="1vvym7bbfbi1x91962nfcqql0fiyv4svdk5329rq43nnh188i456"; depends=[Anthropometry dplyr ggplot2 ggthemes httr lubridate magrittr plyr purrr reshape2 rvest rworldmap scales stringi stringr tibble tidyr xml2]; }; BB = derive2 { name="BB"; version="2019.10-1"; sha256="0kf9sfsm3n036a8a8gjfpc9qdryvadb019kqjh80n1szdv7bdl04"; depends=[quadprog]; }; BBEST = derive2 { name="BBEST"; version="0.1-8"; sha256="0j3ykxsmxima75h40mhqm32l2ffc27pk11rfzjyvv1cm6q2q3gbh"; depends=[aws DEoptim ggplot2 reshape2 shiny]; }; @@ -286,38 +276,38 @@ in with self; { BCC1997 = derive2 { name="BCC1997"; version="0.1.1"; sha256="1lqbivjkc7858jn54av1v9bzp0as43klgndbzkr59dc3l128xp12"; depends=[]; }; BCDAG = derive2 { name="BCDAG"; version="1.0.0"; sha256="1a4ylby1hm2pfdf22qvw1qpgs742y77kpvmymikx8pc1vnhmwjih"; depends=[gRbase lattice mvtnorm]; }; BCDating = derive2 { name="BCDating"; version="0.9.8"; sha256="1px9fimg3fqx8bfkzq6rl34xclc9gcjxqjvj5islpdy4f1ifwph3"; depends=[]; }; - BCE = derive2 { name="BCE"; version="2.1"; sha256="0dqp08pbq7r88yhvlwgzzk9dcdln7awlliy5mfq18j5jhiy7axiz"; depends=[FME limSolve Matrix]; }; + BCE = derive2 { name="BCE"; version="2.2.0"; sha256="13banjjk14rrmyd66iayywip9aznfsk8x3yk4pamlw87byf0z3vk"; depends=[FME limSolve Matrix]; }; BCEA = derive2 { name="BCEA"; version="2.4.1"; sha256="1x5hyl09ky7jgqvqfnf8sx6s8ncglbhk2bwj8mvhl02kgx4n42k6"; depends=[dplyr ggplot2 GrassmannOptim gridExtra MASS purrr reshape2 rlang]; }; BCEE = derive2 { name="BCEE"; version="1.3.0"; sha256="19sg84qw44pa7dmr2l656zv988cj6ap6069l53vza5ynqswckbw2"; depends=[BMA boot leaps Rcpp RcppArmadillo]; }; BCHM = derive2 { name="BCHM"; version="1.00"; sha256="1nyf65grcyf74sixixzl12gylk2rzh7n5id4mbhim4lzdm4j272i"; depends=[cluster coda crayon knitr plyr rjags]; }; BCRA = derive2 { name="BCRA"; version="2.1.2"; sha256="17h0ara1y3fh2xyhjarbw3b549v6kq108bg946ndh7kjykara9dd"; depends=[]; }; BCSub = derive2 { name="BCSub"; version="0.5"; sha256="0c8dlxsx23qfyygmajg2amj78ax01kb3808d9hvy7g3hkgp2i2fp"; depends=[MASS mcclust nFactors Rcpp RcppArmadillo]; }; - BCellMA = derive2 { name="BCellMA"; version="0.3.4"; sha256="1njprs7ksv0w18ffs0agz0290aa2akw48225iaa3bjhbl08dpidl"; depends=[ggplot2 reshape2]; }; + BCT = derive2 { name="BCT"; version="1.2"; sha256="0fs6wh59njgj7ybnkf5ki4g8phmzrchvml0f8jyhhxdarkj5vr5d"; depends=[igraph Rcpp stringr]; }; BCgee = derive2 { name="BCgee"; version="0.1"; sha256="0ad0dj2ymgvkmcmq3jlpmn0pgigdql0xgvcwsbpdydv33a6snr04"; depends=[]; }; BClustLonG = derive2 { name="BClustLonG"; version="0.1.3"; sha256="1p6fm60vhs9l3b120h2l7nz4rf4ckhka7124kzwjd7znax2a336g"; depends=[lme4 MASS mcclust Rcpp RcppArmadillo]; }; BDEsize = derive2 { name="BDEsize"; version="1.6"; sha256="0dyjd5f1cqmzqnrbxz06pbxrk6gjrmsh2x6p7qllczvlmm7jdm5i"; depends=[fpow ggplot2]; }; BDP2 = derive2 { name="BDP2"; version="0.1.3"; sha256="14m85sigx6hk0qzhfgih43m2lxp9xczmp9g3z4pping6msbnbdrz"; depends=[rmarkdown shiny shinyBS]; }; BDWreg = derive2 { name="BDWreg"; version="1.2.0"; sha256="07j6dy69q1as1nwgp2790wzpzmjich2256cddhl7n3h2rs1dja74"; depends=[coda doParallel DWreg foreach MASS]; }; - BDgraph = derive2 { name="BDgraph"; version="2.65"; sha256="0rg3wi9xwsbj90gb60p3vzkfrf76hwh47nc6fwv6c21yzd3s7vm4"; depends=[igraph]; }; - BE = derive2 { name="BE"; version="0.2.0"; sha256="0v2bc9lskhrhp5bnc6c21wwdnralnggn7qbwdqk0bgvmxsyn5ghn"; depends=[rtf]; }; + BDgraph = derive2 { name="BDgraph"; version="2.67"; sha256="0s2j4462zlgyjnqvvvxg4lynhmwwnjaw1cr1chzmagfvaj94qhhz"; depends=[igraph]; }; + BE = derive2 { name="BE"; version="0.2.1"; sha256="1w71avlh7097d85ykywf90kpprr2gq6srkgaqapbhlaw039whsxn"; depends=[rtf]; }; BEACH = derive2 { name="BEACH"; version="1.3.1"; sha256="0biq6c74k8vb8ykafzf3blyi08rp65x1vaw3bfpwdc1ihc9wrgjr"; depends=[devtools DT haven plyr rJava rtf sas7bdat shiny WriteXLS xtable]; }; - BED = derive2 { name="BED"; version="1.4.4"; sha256="1hbdjxh695607ppmk39xclh26k1bq9hrysyp8nc5axhhg1drpiff"; depends=[dplyr DT htmltools miniUI neo2R readr rstudioapi shiny stringr visNetwork]; }; - BEDASSLE = derive2 { name="BEDASSLE"; version="1.5"; sha256="1bz3lr0waly9vj9adwhmgs3lq7zjdkcbvm3y9rnn72qlrwmv5fbn"; depends=[emdbook MASS matrixcalc]; }; + BED = derive2 { name="BED"; version="1.4.8"; sha256="0626v6qrj2rhjfq0pbk2js5asrc810hxq5169xq5armmg7hblg4r"; depends=[dplyr DT miniUI neo2R readr rstudioapi shiny stringr visNetwork]; }; + BEDASSLE = derive2 { name="BEDASSLE"; version="1.6"; sha256="0zqqjyal9wjjl1aayp324wdrq3aaqr7s5j912yb3rrvq4gqcfy0d"; depends=[emdbook MASS matrixcalc]; }; BEDMatrix = derive2 { name="BEDMatrix"; version="2.0.3"; sha256="1pq333x1shxw3wcqgcb4gqg6rwa0hyc24rib235q4zg10r2gyrbm"; depends=[crochet]; }; - BEKKs = derive2 { name="BEKKs"; version="1.1.0"; sha256="0pq2wv107sp7s3k9rlyk5mrdkijy3k017i6i6y16fnzpkz5gi6lw"; depends=[expm forecast future future_apply ggfortify ggplot2 gridExtra mathjaxr Rcpp RcppArmadillo reshape2 xts]; }; + BEKKs = derive2 { name="BEKKs"; version="1.2.1"; sha256="0422635k80lnn2a15qb2izkcxlqxbr8ilhv2ghkq0d4lyd78480c"; depends=[forecast future future_apply GAS ggfortify ggplot2 gridExtra ks lubridate mathjaxr pbapply Rcpp RcppArmadillo reshape2 xts]; }; BENMMI = derive2 { name="BENMMI"; version="4.3-7"; sha256="1v96g4l1zkpvvx8jdifnafyaz4ml8v1bxbl97r1n5n6mgw88gk77"; depends=[benthos dplyr ggplot2 jsonlite knitr markdown purrr readr tidyr xtable]; }; BEST = derive2 { name="BEST"; version="0.5.4"; sha256="109zl99bz1bndan1pm3hm0f1da86a18lcyzl0741z14l0m0d91a9"; depends=[coda HDInterval rjags]; }; BESTree = derive2 { name="BESTree"; version="0.5.2"; sha256="0yij6xdlvhbqifckaylgbhszwwp38d9x6vbpr1nl40mwwnv4bswz"; depends=[plyr]; }; - BET = derive2 { name="BET"; version="0.4.2"; sha256="14d5b90rnf0hh2jsyagm3lg5fk3iri4jw9zwxjfbqhqmsf5hkqi7"; depends=[Rcpp]; }; + BET = derive2 { name="BET"; version="0.5.0"; sha256="1n09lx7w1ih5a7xcd6fp2jag7zc4d2pg4n42lcwnb7inwmcj9m4p"; depends=[Rcpp]; }; BETS = derive2 { name="BETS"; version="0.4.9"; sha256="0daixk7mqmk2jq35i7mjaslz11gxbnnjgwxfvj8x1s88vz9l74sm"; depends=[DBI digest dplyr DT dygraphs forecast foreign ggplot2 grnn htmltools httr lubridate miniUI plotly rjson rmarkdown RMySQL rstudioapi rvest seasonal shiny sqldf stringr urca webshot xml2 zoo]; }; BFS = derive2 { name="BFS"; version="0.4.1"; sha256="1crlx3v6bsd5gi0f1hhlcykydbpqn9fryfw5k0ynlcivgif0ll9z"; depends=[janitor jsonlite lifecycle magrittr pxweb rvest tibble tidyRSS xml2]; }; BFpack = derive2 { name="BFpack"; version="1.0.0"; sha256="1z5j6gd8zv39advb4xmpcbixbg8n516h0gpqkblb8dnb4mbh6d1s"; depends=[bain extraDistr lme4 MASS Matrix mvtnorm pracma]; }; BGData = derive2 { name="BGData"; version="2.4.0"; sha256="0kbalppj7i9rswk8la3jdhzw7zvm9qjbps13i2h9q1s0lyjlcvd4"; depends=[BEDMatrix bigmemory bit crochet ff LinkedMatrix symDMatrix synchronicity]; }; BGGE = derive2 { name="BGGE"; version="0.6.5"; sha256="1h76c40y45xhf2vp9g0q5j9lfwh16q9axbk5c9aqn4md008xr1j2"; depends=[]; }; BGGM = derive2 { name="BGGM"; version="2.0.4"; sha256="0676viahmid0n89jhs93ci8l7rxpam7rn75mdbshgx7f1q3wqiih"; depends=[BFpack GGally ggplot2 ggridges MASS mvnfast network Rcpp RcppArmadillo RcppDist RcppProgress Rdpack reshape sna]; }; - BGLR = derive2 { name="BGLR"; version="1.0.9"; sha256="16chvslsknhfjdnfy79y4bl5xayvrk8j01y0r3nddq02ypwrc2j4"; depends=[MASS truncnorm]; }; + BGLR = derive2 { name="BGLR"; version="1.1.0"; sha256="19qy8llmagrsm28nb80d029wkvqpv6r12f390zlhid0y8s5bpicp"; depends=[MASS truncnorm]; }; BGSIMD = derive2 { name="BGSIMD"; version="1.0"; sha256="0xkr56z8l72wps7faqi5pna1nzalc3qj09jvd3v9zy8s7zf5r7w4"; depends=[]; }; - BGVAR = derive2 { name="BGVAR"; version="2.4.5"; sha256="1jfljhaw54lxv91skvvxaqs6y8pailcp9yphd97kvw8vqnx9yqfy"; depends=[abind bayesm coda GIGrvg knitr MASS Matrix Rcpp RcppArmadillo RcppParallel RcppProgress readxl stochvol xts zoo]; }; + BGVAR = derive2 { name="BGVAR"; version="2.5.0"; sha256="0cy05xnlq07aqdaq3pkdnl0h0z2rhlz5lj20nakc1zs2w8kmjm78"; depends=[abind bayesm coda GIGrvg knitr MASS Matrix Rcpp RcppArmadillo RcppParallel RcppProgress readxl stochvol xts zoo]; }; BGmisc = derive2 { name="BGmisc"; version="0.1"; sha256="15xgm3n3hn5zkrvyfcylyz5q3zah0155914a0rck0ipihb45sbbl"; depends=[Matrix]; }; BH = derive2 { name="BH"; version="1.78.0-0"; sha256="1cwc1q8w9d6i81nclgi7lycsnpj0dcbxlv9rdb0f04r0d03rv7iv"; depends=[]; }; BHAI = derive2 { name="BHAI"; version="0.99.2"; sha256="1hawa55mk590is8ziav7fdszsa3a42bqb0znzqsazz5lkg4daaa7"; depends=[MCMCpack plotrix prevtoinc]; }; @@ -330,14 +320,13 @@ in with self; { BIEN = derive2 { name="BIEN"; version="1.2.5"; sha256="0s98n6zbf48vssd3h63k6kashcxv1kawcb026n0ngsfpc5dv6i48"; depends=[ape DBI doParallel fasterize foreach raster rgdal rgeos RPostgreSQL sf sp]; }; BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="3.4-15"; sha256="0dm2yq2mmpiksmd1r248dv64sn72gazlsrjjwb0bsblivk69s21j"; depends=[miceadds Rcpp RcppArmadillo]; }; BIGDAWG = derive2 { name="BIGDAWG"; version="3.0.3"; sha256="1zbikvhyaksbddv2kz8nqkidjy4qsfp6a8wwyxjy5a0wcnqnwsxf"; depends=[haplo_stats httr XML]; }; - BIGL = derive2 { name="BIGL"; version="1.6.5"; sha256="1ksp88nspjd2si0kicv3j6fvb8i46phgpf6mw8ihfxkn9mrjbs2v"; depends=[ggplot2 MASS minpack_lm nleqslv numDeriv progress rgl robustbase scales]; }; + BIGL = derive2 { name="BIGL"; version="1.6.6"; sha256="1fbbx76gjqfadvg6nwjdla1p6c9mdjvyx412lddyl76rql3ndnwf"; depends=[ggplot2 MASS minpack_lm nleqslv numDeriv progress rgl robustbase scales]; }; BINCOR = derive2 { name="BINCOR"; version="0.2.0"; sha256="0x2s82jql429shk70bhjdy9kamz8dz5ymsxj6kp8ga1711bpwyq6"; depends=[pracma]; }; BINtools = derive2 { name="BINtools"; version="0.2.0"; sha256="0x97h0b2krdgrd0x266fidj77an3dq8mf9lnbas9112p4mhkmk58"; depends=[BH combinat dplyr mvtnorm Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringi tibble]; }; BIOM_utils = derive2 { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; }; BIOMASS = derive2 { name="BIOMASS"; version="2.1.8"; sha256="18ypdqh5fc9a7yq8y5insadmvamrzrd9yn00g1cj1lxii0jn4r43"; depends=[data_table jsonlite minpack_lm proj4 rappdirs raster sp]; }; - BIOdry = derive2 { name="BIOdry"; version="0.8"; sha256="1zga8g50wjnnz2h9b3ak9q67qnl1f14cq6hvdzf9f84pphsnpasa"; depends=[ecodist nlme]; }; + BIOdry = derive2 { name="BIOdry"; version="0.9"; sha256="1j6fbrvhiaz04fpybdldjk2prg3n5ayzvxqbx0g0vbna54kd1vz6"; depends=[ecodist nlme]; }; BISdata = derive2 { name="BISdata"; version="0.1-1"; sha256="0h0fw2qhv0jq9h7mig7rfg5w9gc9q3hz6jl5n3v85yjkw5fxfdns"; depends=[]; }; - BKPC = derive2 { name="BKPC"; version="1.0.1"; sha256="17gmhf6qq8jn2xzkqvjq60xzy0slz6kgfpd0d6hlpnf30ww7q923"; depends=[kernlab]; }; BLCOP = derive2 { name="BLCOP"; version="0.3.3"; sha256="08y9vmx3cknjvk6ngfwxlfnc03cqpj97i1ijrs1cw5sahjc0vmhc"; depends=[fBasics fMultivar fPortfolio knitr MASS quadprog rmarkdown RUnit timeSeries]; }; BLModel = derive2 { name="BLModel"; version="1.0.2"; sha256="0l5f2v5ggadmrci3qhhmxm3j9i6jii0anq5rv5vk50y2qzii2q15"; depends=[]; }; BLOQ = derive2 { name="BLOQ"; version="0.1-1"; sha256="0qs4pnzpfwkii6wpd8my34zw9k003b3is0y0aj1lhcm0qnn1p8h4"; depends=[maxLik mvtnorm]; }; @@ -347,13 +336,12 @@ in with self; { BLRShiny = derive2 { name="BLRShiny"; version="0.1.0"; sha256="0z3gr0bvjs7y0jkygh7h9habnk2807cwziajpgfmb7dxdrhccj68"; depends=[caret dplyr e1071 ggplot2 rhandsontable rmarkdown shiny]; }; BLRShiny2 = derive2 { name="BLRShiny2"; version="0.1.0"; sha256="0cl959hlchba4ikzdvxv2jz30sswh5hc0d8hwx8ckzz52kkj4csa"; depends=[caret dplyr e1071 ggplot2 rhandsontable rmarkdown shiny]; }; BLSM = derive2 { name="BLSM"; version="0.1.0"; sha256="02xidwp91rh34rcqd0q552wzm2j80axs1nnwwv2aj04g96lf7myj"; depends=[Rcpp RcppEigen]; }; - BMA = derive2 { name="BMA"; version="3.18.15"; sha256="06ibk6akpjzwpjb77qpb56hzpfhkyrkl153ljlg660rm8cpxbq2b"; depends=[inline leaps robustbase rrcov survival]; }; + BMA = derive2 { name="BMA"; version="3.18.17"; sha256="1xfsfyjwsk5bp2j50qfhfm1yla4fl2l53d85466a9y3rl57m333d"; depends=[inline leaps robustbase rrcov survival]; }; BMAmevt = derive2 { name="BMAmevt"; version="1.0.4"; sha256="10241cibzmgrmxzjw7fpw64qkayc1wig5xilahyc182841k4if6w"; depends=[coda]; }; BMRBr = derive2 { name="BMRBr"; version="0.2.0"; sha256="0v2ysap5jfkq9fc5blqlfhsv2bs8rqybmp5z4q3g6y3y7qzhypjw"; depends=[rvest xml2]; }; BMRMM = derive2 { name="BMRMM"; version="0.0.1"; sha256="1wpj5pnm9hhc4gzk5lqxhzvg3j4mbwzhdg0hx2a5gqck9rvpvzni"; depends=[fields gsubfn logOfGamma MCMCpack mhsmm multicool pracma]; }; BMRSr = derive2 { name="BMRSr"; version="1.0.3"; sha256="0snb8xs22f1khnywkgrs8pj7w6hg2mfppng0q695xyh4ci157wam"; depends=[dplyr httr purrr readr rlang stringr tibble xml2]; }; BMRV = derive2 { name="BMRV"; version="1.32"; sha256="1j1cwjk3l7f06nqdwrqdyhzm43bb8hj5wgdd14zc1grxyfc9ya95"; depends=[BH]; }; - BMS = derive2 { name="BMS"; version="0.3.4"; sha256="0z3mk1xd1fphf80kdbashkn04jwsr2bghms4d7nav3pw73q41wql"; depends=[]; }; BMT = derive2 { name="BMT"; version="0.1.0.3"; sha256="1vdah5bsn41s2qriq15xi7dw9qzngaacmn5gk6yc7hi89dwyy3yj"; depends=[fitdistrplus partitions]; }; BMTAR = derive2 { name="BMTAR"; version="0.1.1"; sha256="0c70vkgv2sdci33yrk2n297k105wnlxj1qchskdparkiipf47xsh"; depends=[Brobdingnag doParallel expm ggplot2 ks MASS MCMCpack mvtnorm]; }; BMTME = derive2 { name="BMTME"; version="1.0.19"; sha256="07iw6aqcwn4a29b85cavfw6hp66csdzlaqwas40zr5ga3kp72j51"; depends=[BGLR doSNOW dplyr foreach matrixcalc mvtnorm progress Rcpp RcppArmadillo snow tidyr]; }; @@ -366,19 +354,17 @@ in with self; { BNSL = derive2 { name="BNSL"; version="0.1.4"; sha256="0nrlx55364kgvkdpyaimgjxwnzmmdl1gmvyv3wkm8n2jyki92xxp"; depends=[bnlearn igraph Rcpp]; }; BNSP = derive2 { name="BNSP"; version="2.1.6"; sha256="0ig531n9sj50wn5nwljc2x4wijv5i28jx73knzz2kshb56p8sl7l"; depends=[coda corrplot cubature Formula ggplot2 gridExtra label_switching mgcv plot3D plyr threejs]; }; BNrich = derive2 { name="BNrich"; version="0.1.1"; sha256="0m3cz7npc7mwq2vj68hllbd2vf5xqw00jaxv1pm3c28mq7pb459j"; depends=[bnlearn corpcor glmnet graph]; }; - BOG = derive2 { name="BOG"; version="2.0"; sha256="0lz5af813b67hfl4hzcydn58sjhgn5706n2h44g488bks928k940"; depends=[DIME hash]; }; BOIN = derive2 { name="BOIN"; version="2.7.2"; sha256="03h6s1nn87xgkk830wls06mgflg0arq084k74gfp1k4wccwkjr5y"; depends=[Iso]; }; BOJ = derive2 { name="BOJ"; version="0.3"; sha256="1x9lz01fjdk0aybs6zsbbq2xfjvh99qiimmnrkbcd6sj880vn3a3"; depends=[dplyr readr rvest tidyr tidyselect xml2]; }; BOSO = derive2 { name="BOSO"; version="1.0.3"; sha256="0zax40x2d62vcn8zznmzmykk33mv4vbjfl88i3r1djbvalcdf5cf"; depends=[MASS Matrix]; }; BOSSreg = derive2 { name="BOSSreg"; version="0.2.0"; sha256="0ln4nx0jlvz5kqk9qkcl8a2cyhsdcqqfs5112qcaabjiwjnvla7w"; depends=[glmnet Matrix Rcpp RcppArmadillo]; }; BPEC = derive2 { name="BPEC"; version="1.3.1"; sha256="0jvq56cq1wnhwd6wvg02hbx4b5vc2hz1lyxi63pl41rk0xva615a"; depends=[ape coda fields ggmap ggplot2 igraph maptools mvtnorm OpenStreetMap phytools sp]; }; BPM = derive2 { name="BPM"; version="1.0.0"; sha256="17k2d1xjfz85ygx0xnh6yqca9nyypd32d7sbna3k33ynsjqay3x8"; depends=[limma]; }; - BPmodel = derive2 { name="BPmodel"; version="1.1.2"; sha256="1fmiz06ci3x4ljaap6famnz82mrf2rcdg4d282x6wghpy4yv4afa"; depends=[Deriv dplyr extraDistr gamlss gamlss_dist ggplot2 pracma]; }; BRACoD_R = derive2 { name="BRACoD.R"; version="0.0.2.0"; sha256="1jxxrgq2s5fqflp9ac4fx51jhlx33pdwijsp4vq63y430k79vcpp"; depends=[reticulate]; }; BRDT = derive2 { name="BRDT"; version="0.1.0"; sha256="1yv2fh4cc9h35l8cngpxnqa83a7bx79pr7c1gp9h84p1pigg8282"; depends=[]; }; BRETIGEA = derive2 { name="BRETIGEA"; version="1.0.3"; sha256="0q4phggz6smzd294znr1fp0gskpcwdbd6hnvvl3q3z1h7cpf40sn"; depends=[]; }; - BRINDA = derive2 { name="BRINDA"; version="0.1.3"; sha256="1nq7wlwwlyfff0rn4yv8bws0ibd7wssb1jd6ccc7xvhdb2bqv9kc"; depends=[berryFunctions data_table dplyr Hmisc rlang]; }; - BRISC = derive2 { name="BRISC"; version="1.0.4"; sha256="1gvasqx9876jirh37imvxhlnr2qri0gd5nz5fjk9d0vj15w7kxsc"; depends=[matrixStats pbapply RANN rdist]; }; + BRINDA = derive2 { name="BRINDA"; version="0.1.4"; sha256="16nfllqqgcqy10w1craizfjbvnj7q1j2rx0vzrzwfqg4yp23fix3"; depends=[berryFunctions data_table dplyr Hmisc rlang]; }; + BRISC = derive2 { name="BRISC"; version="1.0.5"; sha256="06ppm03clgnsqj6r9qq6fmz609sbigz35iw1qp1lijc4yvwlpr49"; depends=[matrixStats pbapply RANN rdist]; }; BRL = derive2 { name="BRL"; version="0.1.0"; sha256="13qi78v3057qn4hfby14sp26hy3ibl50f06x8gpak6gi76g8bhwi"; depends=[]; }; BRugs = derive2 { name="BRugs"; version="0.9-1"; sha256="1m3dlw6201bzf6fcm4qscpsmgjkpidwiil3m4iwfn0b0iv3dclcv"; depends=[coda]; }; BSBT = derive2 { name="BSBT"; version="1.2.0"; sha256="1whf34fbnsjargby8dq2784rj9mj80ldjgdd3nm897h05h17bs9f"; depends=[expm igraph MASS]; }; @@ -417,15 +403,14 @@ in with self; { BarBorGradient = derive2 { name="BarBorGradient"; version="1.0.5"; sha256="0g2g7hrm23as1xbj79g48r8sj3gsj66fmi895jqlqfbqrl2fl7a5"; depends=[]; }; BarcodingR = derive2 { name="BarcodingR"; version="1.0-3"; sha256="03x26mrlvg00rnfh74wacpgbdk7xr2lq4yd0bx4q2442nli54rdv"; depends=[ape class nnet sp]; }; Barnard = derive2 { name="Barnard"; version="1.8"; sha256="1ki58hjs5kpmp76kwj1qi6hwmdvjphqb1lvrlhnmkgqxg4hw4vqg"; depends=[]; }; + BartMixVs = derive2 { name="BartMixVs"; version="1.0.0"; sha256="0i7h6srzlmbjwyqgfwkq1azxai5hxicfkdxyxs9nzng3zi2ls6i2"; depends=[loo mvtnorm nlme nnet Rcpp]; }; Barycenter = derive2 { name="Barycenter"; version="1.3.1"; sha256="0yhc0wwjqms569gnm8z2l9hgcbw8lyy437ynkij47pa4c1a1qvjy"; depends=[Rcpp RcppArmadillo]; }; BaseSet = derive2 { name="BaseSet"; version="0.0.17"; sha256="1v5f8ixcnqngrhsfrydl7y48gmvmb5srs4xygydv4g4vpmd8gh0c"; depends=[dplyr magrittr rlang]; }; BasketballAnalyzeR = derive2 { name="BasketballAnalyzeR"; version="0.5.0"; sha256="1bad287llg89smqg43lgz2hdkjg3l39mh4k82avgb52xwqp5gjxc"; depends=[circlize corrplot dendextend directlabels dplyr GGally ggnetwork ggplot2 ggplotify ggrepel gridExtra hexbin magrittr MASS network operators PBSmapping plyr readr rlang scales sna sp statnet_common stringr tidyr]; }; BatchExperiments = derive2 { name="BatchExperiments"; version="1.4.3"; sha256="0g3vr2g4v968rwzja1nngji58960p2r494km8wia7x5w3y69p063"; depends=[backports BatchJobs BBmisc checkmate data_table DBI RSQLite]; }; - BatchGetSymbols = derive2 { name="BatchGetSymbols"; version="2.6.1"; sha256="0jm4bswczmha7p8xb78n4q3wxyjxmi7ya5zrfm0gb31g7r275wba"; depends=[crayon curl dplyr furrr future lubridate purrr quantmod rvest scales stringr tibble tidyr XML zoo]; }; + BatchGetSymbols = derive2 { name="BatchGetSymbols"; version="2.6.4"; sha256="1sv4p0f8l79wy3q6jwsi3iy7zljc33z9mnyf8ijb23l64w7fvy9i"; depends=[cli crayon curl dplyr furrr future lifecycle lubridate purrr quantmod rvest scales stringr tibble tidyr XML zoo]; }; BatchJobs = derive2 { name="BatchJobs"; version="1.9"; sha256="0xsw25j2ks9bqgz189qdcyj8hzz93snknlik83nj04s6vy0w7aax"; depends=[backports BBmisc brew checkmate data_table DBI digest RSQLite sendmailR stringi]; }; - BayHaz = derive2 { name="BayHaz"; version="0.1-3"; sha256="08ilghlkgyma5758yw7mdgqycqcillqmx73knzzdlg2kzc77dvg6"; depends=[]; }; BayLum = derive2 { name="BayLum"; version="0.2.1"; sha256="0h0x18al2rqs6wjf4jayc1qv8lkn7rvkbjmr5h1gcggn2c4byyjn"; depends=[ArchaeoPhases coda hexbin KernSmooth Luminescence rjags runjags]; }; - BaySIC = derive2 { name="BaySIC"; version="1.0"; sha256="023ji6q1nvksmhp3ny8ad39xxccc0a1rv9iaiaagwavgzzc0pjd9"; depends=[fields poibin rjags]; }; BayesARIMAX = derive2 { name="BayesARIMAX"; version="0.1.1"; sha256="1rcfq0r8sqiqs65mbpcr8i4667cdb50k6bx6wdh9spr0djh8gfv0"; depends=[coda forecast]; }; BayesBP = derive2 { name="BayesBP"; version="1.1"; sha256="043msccrins1smaizmf7qc6q1cyjdzirw2ygnvi56lskib1cls7m"; depends=[iterators openxlsx]; }; BayesBinMix = derive2 { name="BayesBinMix"; version="1.4.1"; sha256="1b18qg0mjbmrilwqffrq33gw04fzask2xgj1bp4cli51cjf2slf7"; depends=[coda doParallel foreach label_switching]; }; @@ -444,23 +429,23 @@ in with self; { BayesGPfit = derive2 { name="BayesGPfit"; version="0.1.0"; sha256="1sz0bb102h5fj1yz0k89cvcy0pvsh6rfm06i6lfz3pdhdjszsx00"; depends=[lattice]; }; BayesGWQS = derive2 { name="BayesGWQS"; version="0.1.1"; sha256="1vxln01194ipfhzid48x95hrpzkwylhr3nx1dh38rkfsg9fpl2af"; depends=[coda plyr rjags stringr]; }; BayesLCA = derive2 { name="BayesLCA"; version="1.9"; sha256="11ji5s1njip57zkr4bxwp3agx1ddv7yagm5prn9ckcbasan4rbx1"; depends=[coda e1071 fields MCMCpack nlme]; }; - BayesLN = derive2 { name="BayesLN"; version="0.2.2"; sha256="1vxbc365g32q6b1rg68fg6dgzavzbq5wzhnwmnygn8pqk9malnxj"; depends=[coda data_table fAsianOptions ghyp lme4 MASS Matrix optimx Rcpp RcppEigen]; }; + BayesLN = derive2 { name="BayesLN"; version="0.2.6"; sha256="0fykaq17n4n24idasifr3clxgxmkq1cl7z1bqsipddgrz10lax7a"; depends=[coda data_table GeneralizedHyperbolic gsl lme4 MASS Matrix optimx Rcpp RcppEigen]; }; BayesLogit = derive2 { name="BayesLogit"; version="2.1"; sha256="0w3bzk39sxdskwikcz5i0xwfsll4sqgkpr8vw8jvzlcy6dl3yhis"; depends=[]; }; BayesMFSurv = derive2 { name="BayesMFSurv"; version="0.1.0"; sha256="1yxxzwjh1fgfh7qkzf9dfm3x0vbgb0v4p6bf6b5w14kvm06rzhkg"; depends=[coda FastGP MCMCpack mvtnorm Rcpp RcppArmadillo]; }; BayesMRA = derive2 { name="BayesMRA"; version="1.0.0"; sha256="005pygpa8bmr153naxnag7kn876lqwq34d8pzbj954nivlxl4zaw"; depends=[fields igraph Matrix mvnfast Rcpp RcppArmadillo spam]; }; - BayesMallows = derive2 { name="BayesMallows"; version="1.1.1"; sha256="088j10ahvy2wi7m4h69cwzzrshgrbsdkqy5pcakra8p5n0vsi51j"; depends=[cowplot dplyr ggplot2 HDInterval igraph PerMallows Rcpp RcppArmadillo Rdpack relations rlang sets]; }; + BayesMallows = derive2 { name="BayesMallows"; version="1.1.2"; sha256="00i5jjyhxjc9bwnhsli1lyzwyv5s42w0bsfjq8r3jfaq0k31n1cr"; depends=[cowplot dplyr ggplot2 HDInterval igraph PerMallows Rcpp RcppArmadillo Rdpack relations rlang sets]; }; BayesMassBal = derive2 { name="BayesMassBal"; version="1.0.0"; sha256="158vwfp5wn9g28fg48zmd95lfsr6flmcdm4igfw4cmgp4w0w69lq"; depends=[coda HDInterval LaplacesDemon Matrix pracma Rdpack tmvtnorm]; }; BayesMixSurv = derive2 { name="BayesMixSurv"; version="0.9.1"; sha256="19kf39881q00pap9afwvvggk4s4w3qpz17b7065nig1mvk8dnp8r"; depends=[survival]; }; BayesNI = derive2 { name="BayesNI"; version="0.1"; sha256="0zvr6rkb5zxgl53xby69d0j3yrfnlcmac6kwkxz77q5616w9dwq0"; depends=[]; }; BayesNSGP = derive2 { name="BayesNSGP"; version="0.1.2"; sha256="0va4gvyfwfdk3yvhdyxc49qlmzxfblwlmwqh79b93zkv8239kkk1"; depends=[FNN Matrix nimble StatMatch]; }; - BayesNetBP = derive2 { name="BayesNetBP"; version="1.5.9"; sha256="05khqmsr7p9x6s4h7ffkh1sa2aqj42f00z6xkxwm0xlxa6ji6v4s"; depends=[bnlearn doBy fields graph igraph RColorBrewer]; }; + BayesNetBP = derive2 { name="BayesNetBP"; version="1.6.1"; sha256="1c6a82qlcrpbb2c4zp3gk24wcgw6x62lm8hm6n2l1r307dxm2rpb"; depends=[bnlearn doBy fields graph igraph RColorBrewer]; }; BayesOrdDesign = derive2 { name="BayesOrdDesign"; version="0.1.0"; sha256="19fgx66r0hxm4ybjj9pw0xy4a6bw1rgfl0kjz6xwdyh9y9m3c8c6"; depends=[coda fda ggplot2 gsDesign madness ordinal R2jags rjags rjmcmc schoolmath superdiag tidyverse]; }; - BayesPPD = derive2 { name="BayesPPD"; version="1.0.4"; sha256="1kyr9f1r6m3zb095x88hgbma51si5b2vzddi7zkzl02ildkqghgl"; depends=[Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; + BayesPPD = derive2 { name="BayesPPD"; version="1.0.6"; sha256="0hxbqk6dfizr2bcgp8ygrhd0rb33bagwala936dzhsl6pc6zq5iw"; depends=[Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; BayesPieceHazSelect = derive2 { name="BayesPieceHazSelect"; version="1.1.0"; sha256="0znbmv7crqycdx75jh02h6z8d6cifjszbrldv2yva4mkjxsydag5"; depends=[mvtnorm]; }; BayesPiecewiseICAR = derive2 { name="BayesPiecewiseICAR"; version="0.2.1"; sha256="1qrmw7zmygdzz84p76hyh2d8dx88b8xhbbd7radqm39g35zq5wz6"; depends=[mvtnorm]; }; BayesPostEst = derive2 { name="BayesPostEst"; version="0.3.2"; sha256="0r05by4w80j6hb22v3ibj686ixxbj7lkxq499fciz5lqs4lxzf3h"; depends=[brms carData caTools coda dplyr ggplot2 ggridges HDInterval MCMCpack R2jags R2WinBUGS reshape2 rjags rlang ROCR rstanarm runjags texreg tidyr]; }; BayesProject = derive2 { name="BayesProject"; version="1.0"; sha256="0b1xqw7f9kfbmr8m6fl9d2fpwr364s4a5vdw57l6i5rm6lszyfh5"; depends=[Rcpp RcppEigen Rdpack]; }; - BayesRGMM = derive2 { name="BayesRGMM"; version="2.1"; sha256="0amvn45wng2wprclpg2nfxnfgfnkzfailvjk3gw5p5dgqxs63n97"; depends=[abind batchmeans MASS msm mvtnorm plyr Rcpp RcppArmadillo RcppDist Rdpack reshape]; }; + BayesRGMM = derive2 { name="BayesRGMM"; version="2.2"; sha256="0yvjl5kzmh2c7c00jk38cs5g6g0yhrc86p5jn8zf10349md3dpcv"; depends=[abind batchmeans MASS msm mvtnorm plyr Rcpp RcppArmadillo RcppDist Rdpack reshape]; }; BayesRS = derive2 { name="BayesRS"; version="0.1.3"; sha256="0fhvnckabp0z1cdsbjgv3ijnzaxwhrk83fwcflgqbhvm3a9lzr77"; depends=[coda ggplot2 metRology reshape rjags]; }; BayesReversePLLH = derive2 { name="BayesReversePLLH"; version="1.4"; sha256="1wigp9692z0vf1vm3cpbl6wcgp3zyqzfbrkd344hi88421kj1yxj"; depends=[Rcpp RcppArmadillo]; }; BayesS5 = derive2 { name="BayesS5"; version="1.41"; sha256="0vs6s50h4gpxda9lbxfgn76k9kp81l62a6bv22r7ixsjlnd4baql"; depends=[abind Matrix snowfall splines2]; }; @@ -472,7 +457,7 @@ in with self; { BayesSpec = derive2 { name="BayesSpec"; version="0.5.3"; sha256="17gchdijcjhbr2y4glbq9szjh4qmgivzh6p4fllh589da18nzjcr"; depends=[mvtnorm pscl trust]; }; BayesSummaryStatLM = derive2 { name="BayesSummaryStatLM"; version="2.0"; sha256="1b4h6s3cb8904slyy2pq3dzy3941p87s32zacmpwrnp7yvwxzl3d"; depends=[bit ff mvnfast]; }; BayesSurvival = derive2 { name="BayesSurvival"; version="0.2.0"; sha256="1kpp0dfcmk86grg13b817py49v071q6p0dh8z22g6x2i8zl1vdfi"; depends=[ggplot2 survival]; }; - BayesTools = derive2 { name="BayesTools"; version="0.2.3"; sha256="1h9v47dy1g2xhplg3j24yrqwcfd3k3lrvh29ankv2mmk0mix6asc"; depends=[bridgesampling coda extraDistr ggplot2 mvtnorm Rdpack runjags]; }; + BayesTools = derive2 { name="BayesTools"; version="0.2.10"; sha256="0c8676wf9mmdf20amginzaqnj03yd853s5qdbbl4vjjmxv5zqwd2"; depends=[bridgesampling coda extraDistr ggplot2 mvtnorm Rdpack rjags runjags]; }; BayesTree = derive2 { name="BayesTree"; version="0.3-1.4"; sha256="0saca1ln582szqzc2c78z24b1lszzhc9hvsin73kb7r2dlg5ciii"; depends=[nnet]; }; BayesTreePrior = derive2 { name="BayesTreePrior"; version="1.0.1"; sha256="13igmvw1wj8kzfijzsrhdqr52kv4vqrm91i71ay6f7jnkry3spaw"; depends=[]; }; BayesTwin = derive2 { name="BayesTwin"; version="1.0"; sha256="026blnhihbx9bpd63mxhbp0kpvj0lwbj7mg72alyfr2jnrh1n3lp"; depends=[coda foreign matrixStats rjags]; }; @@ -494,19 +479,19 @@ in with self; { Bchron = derive2 { name="Bchron"; version="4.7.6"; sha256="1s8bx9a5rpcrw0msnjf565crz3d2fykvy5fj1chbqxzjh7qm865w"; depends=[checkmate coda dplyr ggforce ggplot2 ggridges magrittr MASS mclust purrr scales stringr]; }; BeSS = derive2 { name="BeSS"; version="2.0.3"; sha256="09zxpzcaj13fn38cwd0xk0254aphb3jn1wdwn9hiq9vapfsgn0dx"; depends=[glmnet Matrix Rcpp RcppEigen survival]; }; BeastJar = derive2 { name="BeastJar"; version="1.10.6"; sha256="0581q9m7lb681d12vld231vn6wqv5s2sqkvav4fd0xllvjighlx7"; depends=[rJava]; }; - Benchmarking = derive2 { name="Benchmarking"; version="0.29"; sha256="06zphnpnxvp6frl2gkmrsfils8xi64b4m8gvs483k8l0z4bjrfbk"; depends=[lpSolveAPI quadprog Rcpp ucminf]; }; + Benchmarking = derive2 { name="Benchmarking"; version="0.30"; sha256="0jmdp8qkbg0vjxbvx7mjh3l0yfq2zs63g6bsm6ksi56yvx7l9rvi"; depends=[lpSolveAPI quadprog Rcpp ucminf]; }; BenfordTests = derive2 { name="BenfordTests"; version="1.2.0"; sha256="1nnj0w0zwcmg7maqmmpixx7alvsyxva370ssc26ahg6kxy5a621w"; depends=[]; }; Bergm = derive2 { name="Bergm"; version="5.0.3"; sha256="0wi8l2xwfiw8slg37z2milck6js26iy0yaj7m6sxgfh16j3n2gwx"; depends=[coda ergm Matrix matrixcalc MCMCpack mvtnorm network statnet_common]; }; Bessel = derive2 { name="Bessel"; version="0.6-0"; sha256="0iwm08nhlivi4zwcqdi296a1l4n4lfanfxhaysh9vcsyk1kpiacf"; depends=[Rmpfr]; }; - Bestie = derive2 { name="Bestie"; version="0.1.4"; sha256="1w8d1zrxp5v0wlldzj0kmcrdwyn5f2klbdpkhd79hvpf3lpq6h68"; depends=[BiDAG mvtnorm Rcpp]; }; + Bestie = derive2 { name="Bestie"; version="0.1.5"; sha256="1j3xnwq9faim8cjb6cz54mix7ly8dzxa5qsdglcgl2gfbvzbb9s1"; depends=[BiDAG mvtnorm Rcpp]; }; BetaBit = derive2 { name="BetaBit"; version="1.4"; sha256="11cvl9m20ycc0zsxbdapjflgsiaxx4dzaygjhv948adjfi5fycbn"; depends=[digest]; }; BetaPASS = derive2 { name="BetaPASS"; version="1.1-1"; sha256="17q1bfmijv38zyaj5fxlylf5zmkqry4ca9wm5km6zpksgsg2kjjq"; depends=[betareg ggplot2 pbapply]; }; BetterReg = derive2 { name="BetterReg"; version="0.2.0"; sha256="08qafm8j0bbh6qywyq6dr1j204n9cxrpyy2fh74mbgm3xknazxsc"; depends=[car dplyr]; }; BeviMed = derive2 { name="BeviMed"; version="5.8"; sha256="12ngw3b05mqsf95svvkk5s8w0fs1yfbpbfk8x9a9v2yva5n65y7a"; depends=[Matrix Rcpp]; }; BeyondBenford = derive2 { name="BeyondBenford"; version="1.4"; sha256="04jdx35955g44v2is6zxfw1gip7zh3li8divc7iy5hl0jrshfhv3"; depends=[ggplot2]; }; - Bhat = derive2 { name="Bhat"; version="0.9-10"; sha256="1vg4pzrk3y0dk1kbf80mxsbz9ammkysh6bn26maiplmjagbj954v"; depends=[]; }; + Bhat = derive2 { name="Bhat"; version="0.9-12"; sha256="0jrn57v90anxsdasfwn3c4mxwzz8b5nbvsn5c57d71xfdza4lh6f"; depends=[MASS]; }; BiBitR = derive2 { name="BiBitR"; version="0.3.1"; sha256="0wfwph6nw12hb43j14i9ycj8m2zn0m5ynp7afq9cray8rbgvxfv6"; depends=[biclust cluster dendextend foreign lattice randomcoloR viridis]; }; - BiDAG = derive2 { name="BiDAG"; version="2.0.4"; sha256="1vbkjz7sdmnqyhc5br8d0g1dgrx59v0lqjbk9ya64c2c6izhlq3c"; depends=[graph pcalg RBGL Rcpp Rgraphviz]; }; + BiDAG = derive2 { name="BiDAG"; version="2.0.6"; sha256="0mavij8wklvhjw6b1cp82f7a05r74wilyhw285jq5cmfissmhzr5"; depends=[coda graph Matrix pcalg RBGL Rcpp Rgraphviz]; }; BiDimRegression = derive2 { name="BiDimRegression"; version="2.0.1"; sha256="00zcvk5v8rn3dp02sivs5z7cch9y8csp5cjhhs4ragdgcry0c3i5"; depends=[Formula]; }; BiProbitPartial = derive2 { name="BiProbitPartial"; version="1.0.3"; sha256="0y19b8bkwr7rpygmj03013slmfbyd7aj6714hm14w5rdbnckymw3"; depends=[coda Formula mvtnorm numDeriv optimr pbivnorm Rcpp RcppArmadillo RcppTN]; }; BiSEp = derive2 { name="BiSEp"; version="2.2"; sha256="1ha7rc1q54dr2xl4bpkiwl703igmmi9qphsgv2h0flq7iz0gr351"; depends=[AnnotationDbi GOSemSim mclust]; }; @@ -515,7 +500,6 @@ in with self; { BiasedUrn = derive2 { name="BiasedUrn"; version="1.07"; sha256="13i2lgfnjhlbbm2yxfc2l5hswqw6x03pwba5csjmirv8kpjw4xr3"; depends=[]; }; BibPlots = derive2 { name="BibPlots"; version="0.0.8"; sha256="0zvbyh8spr0ywj64b2rc8jcq4fgn87858km4mkkh17g30ympg767"; depends=[]; }; BifactorIndicesCalculator = derive2 { name="BifactorIndicesCalculator"; version="0.2.2"; sha256="1vnwksw0j4lc2knlcmm5748pf4d7r44sn34s1mrv9p50hlnkk85p"; depends=[lavaan mirt mnormt MplusAutomation tidyr]; }; - BigDataStatMeth = derive2 { name="BigDataStatMeth"; version="0.99.32"; sha256="0iz6pzlhkziwdwv80sy9zcxfvkxxjhqmgn7lk7lv1mkhywqkd9jk"; depends=[beachmat BH data_table Rcpp RcppEigen RcppParallel RCurl rhdf5 Rhdf5lib RSpectra]; }; BigQuic = derive2 { name="BigQuic"; version="1.1-11"; sha256="1dxzkj26hd05mi02i35k7dknlikjfbsgvjrqwf42k3kjpf501xh4"; depends=[Matrix Rcpp scalreg]; }; BigVAR = derive2 { name="BigVAR"; version="1.1.0"; sha256="0a9c9c71ymw498pzz2q5bwywcg9fa3hvjmbcn1flrmpzwr7cv6yx"; depends=[abind lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; }; BimodalIndex = derive2 { name="BimodalIndex"; version="1.1.9"; sha256="1m1dcj0ryjicaqjlkch7aymsklmvjvn2dvnbssi1cpi54bzn8l7g"; depends=[mclust oompaBase]; }; @@ -524,7 +508,6 @@ in with self; { BinNonNor = derive2 { name="BinNonNor"; version="1.5.3"; sha256="0ijjv2w4bx0i3mks7s4vii21hc9iq69p3jld1qg68a6115njsm24"; depends=[BB corpcor Matrix mvtnorm]; }; BinNor = derive2 { name="BinNor"; version="2.3.3"; sha256="07r7nf4ygilp470z93x9dc5zddc96m2dkw6d2s4an8fbr4pljc1y"; depends=[corpcor Matrix mvtnorm psych]; }; BinOrdNonNor = derive2 { name="BinOrdNonNor"; version="1.5.2"; sha256="17981jfjjgsfzjwbv9cjgqdha846rf03nfd8kgj4wiljgz855mz9"; depends=[BB corpcor GenOrd Matrix mvtnorm OrdNor]; }; - BinQuasi = derive2 { name="BinQuasi"; version="0.1-6"; sha256="0jf7zf3yqr2kgcm6h35234x2dqf65d2dzsh63b4q8m5l36r77k59"; depends=[BiocGenerics csaw edgeR GenomicAlignments GenomicRanges IRanges mgcv pracma quadprog RMySQL Rsamtools S4Vectors SummarizedExperiment]; }; BinSegBstrap = derive2 { name="BinSegBstrap"; version="1.0-1"; sha256="1ikaqhcymy27qrpf85a23dpazy8gd407yi0z0w3nl5l38clz4h8w"; depends=[Rcpp]; }; Binarize = derive2 { name="Binarize"; version="1.3"; sha256="0xmgxlfyvgkv7xpngy9am6ihzwbjbfgp7psfnyhb1v0kj9iy7ids"; depends=[diptest]; }; BinaryDosage = derive2 { name="BinaryDosage"; version="1.0.0"; sha256="10nf11c57j0ls4znm137w831s7zmihg7bybrfg666hx7c9amspjw"; depends=[digest prodlim Rcpp]; }; @@ -540,16 +523,17 @@ in with self; { BioProbability = derive2 { name="BioProbability"; version="1.0"; sha256="051m761zf079s0p4q0ambwqc22qjz2yajxrsmnjnxvqiaadaj1q7"; depends=[]; }; BioStatR = derive2 { name="BioStatR"; version="3.1.2"; sha256="1fs5hzsb770ygcysmwl8dyfkrq3nwhsfw4jd73gbdw3x8dqxc6c4"; depends=[ggplot2]; }; BioVenn = derive2 { name="BioVenn"; version="1.1.3"; sha256="0nwqfb65vhr2246w17nv27v186gzl5n3jxnqx7r9rq525qvyx0rg"; depends=[biomaRt plotrix svglite]; }; - BiocManager = derive2 { name="BiocManager"; version="1.30.16"; sha256="0m9qxwqajg8lp0z06blbpgk3zw0z73aly1cvmjk6mvwja6jm99vm"; depends=[]; }; + BiocManager = derive2 { name="BiocManager"; version="1.30.17"; sha256="1smcama5srwl43icwfnfgy44ls8m3437wyc841v3sc3xd298sqr5"; depends=[]; }; Biocomb = derive2 { name="Biocomb"; version="0.4"; sha256="0jqfac81r5731m0i9jq7v5ns9263p8r7i03jyz10y915kfr6ikh6"; depends=[arules class e1071 FSelector gtools MASS nnet pamr pROC randomForest Rcpp rgl ROCR rpart RWeka]; }; Biodem = derive2 { name="Biodem"; version="0.5"; sha256="1phnq6zq96i6z7jj196png3spjpbbx5p2s8iya0vvbfik12ivzkc"; depends=[]; }; - BiodiversityR = derive2 { name="BiodiversityR"; version="2.14-1"; sha256="1pla3jqjawcii7skpc3yc2pmkc8r8cm507b50r2lg2criy0xf4fx"; depends=[Rcmdr vegan]; }; + BiodiversityR = derive2 { name="BiodiversityR"; version="2.14-2"; sha256="0kgdqczpqlpnr5i969p4aq6ilq9n6vn6zcafnvgjajls74wcdv45"; depends=[ggplot2 Rcmdr vegan]; }; Bioi = derive2 { name="Bioi"; version="0.2.10"; sha256="1ay8889490nfhxhh72fvk9z4h58xknm2b145xhbx2wbzj65zf9ib"; depends=[assertthat dplyr igraph Rcpp]; }; Biolinv = derive2 { name="Biolinv"; version="0.1-3"; sha256="1c081rhbgl6n76p2knaiyvjx0l02slix92vgfl2spss5cb9qzkln"; depends=[classInt fields raster sp spatstat spatstat_core spatstat_geom]; }; Biopeak = derive2 { name="Biopeak"; version="1.0"; sha256="1l08m1jl8yygbdfzk8klpj1q2m7icvxi98vmk7akxs0sswjc6wd2"; depends=[cluster dbscan factoextra gplots RColorBrewer]; }; Bios2cor = derive2 { name="Bios2cor"; version="2.2"; sha256="1wkj9vr33m9jilidil9jpw5rzr3pf7gkimxdvch22ks4bgkx7l1w"; depends=[bigmemory bio3d circular igraph]; }; Biostatistics = derive2 { name="Biostatistics"; version="1.0.4"; sha256="1fcrj53rqg7mdhrrsl95l0n6hycb0863isch2f6zzsqdqbxhq7dh"; depends=[learnr]; }; - BiplotML = derive2 { name="BiplotML"; version="1.0.1"; sha256="08n5cxylzj9d3x2b9pbs14viw63wn1k7kdgayp017v6mj9s09wpl"; depends=[optimr optimx shapes]; }; + BipartiteModularityMaximization = derive2 { name="BipartiteModularityMaximization"; version="1.22.415.2"; sha256="05a00zwhdmh614m937mx6alarac5inrzp78xjhqhwf26gvg7lpb9"; depends=[Rcpp]; }; + BiplotML = derive2 { name="BiplotML"; version="1.1.0"; sha256="1wrn3bz3lwh05fs97m4zq12xy7vgkwb9kn4xvx5kfiipps1kqw8s"; depends=[optimr optimx shapes]; }; BisRNA = derive2 { name="BisRNA"; version="0.2.2"; sha256="11jl5109nlm272vncprwplkz4kpvg7yx6yfnbjg47lfrsxcj8n0g"; depends=[MASS]; }; BisqueRNA = derive2 { name="BisqueRNA"; version="1.0.5"; sha256="0p3p5lp69gri7vs6qfpm7br4ksbs4l7clm4nj8ki99wpqiqni23n"; depends=[Biobase limSolve]; }; BivGeo = derive2 { name="BivGeo"; version="2.0.1"; sha256="1sj52v1zmk425jw9acq9y0jdp3agx103yzf1bjbc5vrmk1x0i0qr"; depends=[]; }; @@ -572,7 +556,7 @@ in with self; { BoardGames = derive2 { name="BoardGames"; version="1.0.0"; sha256="1w3ghs29qlnjrd46lvv055snclwwy6a22fgdqszqm377w4favnhm"; depends=[]; }; Bodi = derive2 { name="Bodi"; version="0.1.0"; sha256="1z3xamj4qh3g5asrl3kbvcnx3r66mch34d0hlz9vg0498s9fwn6s"; depends=[gbm mgcv opera ranger rpart]; }; Bolstad = derive2 { name="Bolstad"; version="0.2-41"; sha256="0rrx254wmr4i57h097ahba151chm8l2287qfg01p1lg47znld21h"; depends=[mvtnorm]; }; - Bolstad2 = derive2 { name="Bolstad2"; version="1.0-28"; sha256="08cfadvl9jl9278ilsf8cm2i2a3i8zsa2f3vjzw2nlv85fwi2c7v"; depends=[]; }; + Bolstad2 = derive2 { name="Bolstad2"; version="1.0-29"; sha256="1pxl5q2kb8k2dkq4n34y6fj5snqx77fl76dznx22l64x4dig2q6d"; depends=[]; }; BoltzMM = derive2 { name="BoltzMM"; version="0.1.4"; sha256="17nsjr2y8nniaxd6f13g85gb9rshar72qqp45yh2ygg4zrx1d226"; depends=[BH Rcpp RcppArmadillo]; }; BonEV = derive2 { name="BonEV"; version="1.0"; sha256="0lmgrg53b0abb5hidyjjmwn7lf2ani84k9fil7g6j6mdajjhh1b7"; depends=[qvalue]; }; BondValuation = derive2 { name="BondValuation"; version="0.1.0"; sha256="1sgnf5a6rm1br6i82bmp7s044012bwfxa9yb6bjkq8kr83mf7i6v"; depends=[Rcpp timeDate]; }; @@ -591,7 +575,7 @@ in with self; { BoutrosLab_plotting_general = derive2 { name="BoutrosLab.plotting.general"; version="7.0.3"; sha256="07vfaxgxnzj3dlv116x32bndzqmdbpc5szpjw73a9km8f2fkkb2k"; depends=[cluster e1071 gridExtra gtable hexbin lattice latticeExtra MASS]; }; BradleyTerry2 = derive2 { name="BradleyTerry2"; version="1.1-2"; sha256="0vss3ib74cz2zn1afmrvllawghj9z2ay4x1ysvk4rqvjmiia4a2i"; depends=[brglm gtools lme4 qvcalc]; }; BrailleR = derive2 { name="BrailleR"; version="0.32.1"; sha256="0hnwfn3z9d22jp9xqgz7sz3yqlay863ys9czvd07xyscqpzq973k"; depends=[devtools dplyr extrafont ggplot2 gridGraphics gridSVG hunspell knitr magrittr mathjaxr moments nortest reticulate rlang rmarkdown roloc rolocISCCNBS whisker XML xtable]; }; - BrainCon = derive2 { name="BrainCon"; version="0.1.0"; sha256="10c76l14kdvcyfhph5zsrn4ayh0x454cxbn1v85jamcalp610n69"; depends=[glmnet MASS]; }; + BrainCon = derive2 { name="BrainCon"; version="0.2.0"; sha256="0a95jlbll4smi32z7ykf64cyrkscnb7shzj10i1p1hsf90dwi7sv"; depends=[glmnet MASS]; }; Branching = derive2 { name="Branching"; version="0.9.4"; sha256="1c209gdasm7qipv2gg4d1hr0jmhnzz5rddgjxb7xacazc0c2mhff"; depends=[]; }; BrazilMet = derive2 { name="BrazilMet"; version="0.1.0"; sha256="0yrc0ha7ysmad7l0kwylgmmd0b5zy86dsba4lrj8qa294lgxl5fa"; depends=[dplyr readxl stringr tidyr]; }; BreakPoints = derive2 { name="BreakPoints"; version="1.2"; sha256="125fvzkmfnriyd4y4nywj5ihm766xlsyi7dpnq57fa9d38ffbyf2"; depends=[MASS zoo]; }; @@ -603,7 +587,7 @@ in with self; { Buddle = derive2 { name="Buddle"; version="2.0.1"; sha256="0hi516cbl93z00jpdgyp3j5hz0xf594vn65p6ahpffwzh1l8s1cf"; depends=[plyr Rcpp RcppArmadillo]; }; BuildSys = derive2 { name="BuildSys"; version="1.1.2"; sha256="1mqwnr8x883nhd7mpqzc351njdvdqps8w8b106l2b4l2620c546f"; depends=[digest]; }; BullsEyeR = derive2 { name="BullsEyeR"; version="0.2.0"; sha256="1p8b5w818zi7zs0n13cc3sw8z0z9mfr5cn5y5icsx1jam5amppci"; depends=[Matrix NLP slam tm topicmodels]; }; - BurStFin = derive2 { name="BurStFin"; version="1.02"; sha256="16w2s0bg73swdps9r0i8lwvf1najiqyx7w7f91xrsfhmnqkkjzka"; depends=[]; }; + BurStFin = derive2 { name="BurStFin"; version="1.3"; sha256="082kbs4blc6ldgp18k34fxqilqmwgynrjj1mbji198v7pn4y8s0h"; depends=[]; }; BurStMisc = derive2 { name="BurStMisc"; version="1.1"; sha256="0cyi42zkn2dby162x9f95b3hpqxbzx25s7nahb4p86r60xj3a5c0"; depends=[]; }; BusinessDuration = derive2 { name="BusinessDuration"; version="0.2.0"; sha256="17923n1r3n8kp7qqzr2dv8ffax355yyc3b9f6mv2hxy6k31hrrb8"; depends=[chron]; }; BuyseTest = derive2 { name="BuyseTest"; version="2.3.11"; sha256="1qn3nb8099rr511wrq7mb35hdm25hkyhfk22rmpw9z1md72xg9qr"; depends=[data_table doParallel foreach ggplot2 lava prodlim Rcpp RcppArmadillo riskRegression]; }; @@ -611,23 +595,22 @@ in with self; { BwQuant = derive2 { name="BwQuant"; version="0.1.0"; sha256="0pna0ppj9hkxpc2mbyy0ss7zrl5y736h5xsfkhmqr0389vmgibrj"; depends=[KernSmooth nleqslv quantreg]; }; C443 = derive2 { name="C443"; version="3.2.3"; sha256="0zjnwkn17213x2zhflmmrplp6kr8zg04pfynpkwsgmf4rqyfyjvx"; depends=[cluster ggplot2 gridExtra igraph MASS partykit plyr qgraph RColorBrewer reshape2 rpart]; }; C50 = derive2 { name="C50"; version="0.1.6"; sha256="1d4cy6xps17c97r5hipa2ar9hrw17iq1ld7afv5fd1v2cpic086c"; depends=[Cubist partykit]; }; - CA3variants = derive2 { name="CA3variants"; version="3.1"; sha256="0gfr8giwb9z840gbf0xzdyd1xxjhd2m28fg4djja83kdwjf73fb5"; depends=[checkmate ggforce ggplot2 ggrepel gridExtra multichull plotly]; }; + CA3variants = derive2 { name="CA3variants"; version="3.2"; sha256="1aaf0rs2hxdk8px8b67a4lsnyhmm30r9nab1pmcbs4jcf27qwq0a"; depends=[checkmate ggforce ggplot2 ggrepel gridExtra multichull plotly]; }; CADFtest = derive2 { name="CADFtest"; version="0.3-3"; sha256="06bwv728ckalzibxginzfica24w18m4g87i0i064m3q89ghmnlqm"; depends=[dynlm sandwich tseries urca]; }; CADStat = derive2 { name="CADStat"; version="3.0.8"; sha256="0wdglw1vyd5gz70r9ma0mwshvizv39nb4ahp8pvr70c4qqzsfhc0"; depends=[bio_infer car gdata gmodels JavaGD JGR lattice MASS quantreg rJava rpart XML]; }; CAISEr = derive2 { name="CAISEr"; version="1.0.16"; sha256="08br6hdpgf9y2fix299diwd8r3q4gylpbzll4knpxq0vi18a3hz3"; depends=[assertthat ggplot2 gridExtra pbmcapply]; }; CALANGO = derive2 { name="CALANGO"; version="1.0.10"; sha256="09syfslac2bhw8dia9c64xkfqsr3j0nr134pq9gvj7jvy5b3dqbr"; depends=[ape assertthat BiocManager dendextend DT ggplot2 heatmaply htmltools htmlwidgets knitr nlme pbmcapply pkgdown plotly rmarkdown taxize]; }; CALF = derive2 { name="CALF"; version="1.0.17"; sha256="021x1gp0493g6qnfih755c0xcddz77i3p22bgjlx1lpzgqmrgrki"; depends=[data_table ggplot2]; }; CALIBERrfimpute = derive2 { name="CALIBERrfimpute"; version="1.0-6"; sha256="0ghi6pkv9ki0iz4lkli3hkrsk6xiph2ha2pij6dg4wi7mcjdhsbi"; depends=[mice mvtnorm randomForest]; }; - CAMAN = derive2 { name="CAMAN"; version="0.74"; sha256="0d932fbqzlxlhn7m8zfx7wr02pc7fm8398rym1jh2cdy2fk5im08"; depends=[mvtnorm sp]; }; + CAMAN = derive2 { name="CAMAN"; version="0.75"; sha256="1r6bxqg9wrllznrm5n5a5kcskcj6cd9l5lm5hkyq1v2vb751z6i2"; depends=[mvtnorm sp]; }; CAMML = derive2 { name="CAMML"; version="0.1.1"; sha256="06xszdr3v41qqd2l0s3kdbzwn03054imazndplbihx5a7032gxvj"; depends=[AnnotationDbi dplyr edgeR MASS Matrix org_Hs_eg_db org_Mm_eg_db Seurat SeuratObject VAM]; }; CANSIM2R = derive2 { name="CANSIM2R"; version="1.14.1"; sha256="1dnzbd9lyqj3w80lx12qxcsbmv8wy6hxknyi5ijp99cfv7kaq1kc"; depends=[downloader Hmisc reshape2]; }; - CARBayes = derive2 { name="CARBayes"; version="5.2.5"; sha256="0lrir2qqpignndvf8xjpyiwh9fc9iw2b0bin5vlxh88krhbkyx9f"; depends=[CARBayesdata coda dplyr GGally leaflet MASS MCMCpack Rcpp rgdal sp spam spdep truncnorm]; }; - CARBayesST = derive2 { name="CARBayesST"; version="3.2.2"; sha256="1xpyk2y1qjaaqvxhbhxbkx97kfddy24cx81my1100v5i8mabfayq"; depends=[CARBayesdata cascsim coda dplyr GGally ggplot2 gridExtra gtools leaflet MASS matrixStats MCMCpack Rcpp rgdal sp spam spdep truncnorm]; }; - CARBayesdata = derive2 { name="CARBayesdata"; version="2.2"; sha256="06pkhmlkp4hl7c6bgarhab6z640h1xvgw86q1ihipbc432an4gvl"; depends=[shapefiles sp]; }; + CARBayes = derive2 { name="CARBayes"; version="5.3"; sha256="03gfid6bzihp4xyinkdn9f1mpa13wl3avp71xrdmsj3ja8sx1qcb"; depends=[CARBayesdata coda dplyr GGally leaflet MASS MCMCpack Rcpp sf spam spdep truncnorm]; }; + CARBayesST = derive2 { name="CARBayesST"; version="3.3"; sha256="0j6liipph9j91kv2yljn1lqa4sm0a1kd2gyjbl9v3110jxly2znk"; depends=[CARBayesdata coda dplyr GGally ggplot2 gridExtra gtools leaflet MASS matrixStats MCMCpack Rcpp sf spam spdep truncdist truncnorm]; }; + CARBayesdata = derive2 { name="CARBayesdata"; version="3.0"; sha256="03m0r6n10ssljhliipvslwxgcpv0whvlj27d7awa7sp37j3aafx5"; depends=[sf]; }; CARE1 = derive2 { name="CARE1"; version="1.1.0"; sha256="1zwl4zv60mrzlzfgd7n37jjlr0j918a8ji36n94s5xw8wwipiznw"; depends=[]; }; CARLIT = derive2 { name="CARLIT"; version="1.0"; sha256="04kpjfps4ydf8fj75isqp16g1asdsyf8nszhbfkpw1zxkrmiksyp"; depends=[]; }; CARRoT = derive2 { name="CARRoT"; version="2.5.2"; sha256="1dyxmllp01wb2yrmcwb47n5zwyzfrdaqhif4bcpmcgfybqfxical"; depends=[doParallel foreach nnet Rdpack]; }; - CARS = derive2 { name="CARS"; version="0.2.2"; sha256="18l2bhfwma24q1zg1y1xmlcmnbzjqmmny3h7s179kslagnh3kmsj"; depends=[np]; }; CARlasso = derive2 { name="CARlasso"; version="0.1.2"; sha256="05r5n5bh0fpwfigr6czh9pg29zyrw73idfvs9qm8vr3dvcmvc42r"; depends=[coda ggplot2 ggraph igraph MASS Matrix Rcpp RcppArmadillo RcppProgress]; }; CASMAP = derive2 { name="CASMAP"; version="0.6.1"; sha256="1447d4gflan2093fb68inb2ysx5svb9vhnjc7lnkgpjsiam4p8yy"; depends=[Rcpp]; }; CAST = derive2 { name="CAST"; version="0.6.0"; sha256="1v20cdldfyli3bn0m9dpfz8apapzqvxy03r1hk2pbv65lqpair4f"; depends=[caret data_table FNN ggplot2 lattice plyr reshape zoo]; }; @@ -643,24 +626,22 @@ in with self; { CBT = derive2 { name="CBT"; version="1.0"; sha256="13h6sf7w03nfq2arqymwww13ywnv9xnqbqazlzn856mj3ggaqda7"; depends=[]; }; CC = derive2 { name="CC"; version="1.0"; sha256="189si37ggichqmzy8m686zw1cijix7yfy8ma5iqpnq1q9vm3pcvy"; depends=[]; }; CCA = derive2 { name="CCA"; version="1.2.1"; sha256="1l4vp8yd42rpsm40szjfzhvbb5c7kl7yf4346i0940s6gk7bzzi8"; depends=[fda fields]; }; - CCAMLRGIS = derive2 { name="CCAMLRGIS"; version="3.2.0"; sha256="0y57r4mr8i728z0fcf5apnpjlfx9bd1900xw566xnizyll208w19"; depends=[dplyr geosphere magrittr raster rgdal rgeos sp]; }; + CCAMLRGIS = derive2 { name="CCAMLRGIS"; version="4.0.0"; sha256="10pf6ycy8bgkjsjj2vd0ci5xdg8b547bvidmyhc0klwfqp0b2www"; depends=[dplyr geosphere magrittr raster sf sp terra]; }; CCM = derive2 { name="CCM"; version="1.2"; sha256="1mhl7yppniybdffylddbbb65n7gmv029fb46wlsxm4yf2xkplmwy"; depends=[]; }; - CCP = derive2 { name="CCP"; version="1.1"; sha256="07jxh33pb8llk1gx4rc80ppi35z8y1gwsf19zrca9w91aahcs8cx"; depends=[]; }; + CCP = derive2 { name="CCP"; version="1.2"; sha256="067nf1gag3ya7v9vzcpvallga5dr243q0q07fd370k0zynmhcfby"; depends=[]; }; CCTpack = derive2 { name="CCTpack"; version="1.5.2"; sha256="1kkxsk9x4jz2bvldmba7fsri3zc1cjz15z0xicjmfc7lj72ngdig"; depends=[MASS mvtnorm polycor psych R2jags rjags]; }; CCWeights = derive2 { name="CCWeights"; version="0.1.6"; sha256="0in3pl1n48jal6f7kiyw60by11vbga8vr45x0wywghd7dz60ppfv"; depends=[bs4Dash dplyr DT fresh magrittr plotly readr readxl rmarkdown shiny]; }; CDFt = derive2 { name="CDFt"; version="1.2"; sha256="19axaf3bh9gasnsfamd5ych1jn751scaplgwpmsf3liazcqqpa61"; depends=[]; }; CDLasso = derive2 { name="CDLasso"; version="1.1"; sha256="0n699y18ia2yqpk78mszgggy7jz5dybwsi2y56kdyblddcmz1yv7"; depends=[]; }; - CDM = derive2 { name="CDM"; version="7.5-15"; sha256="159ny2dz0rf1r3k1mqlfwambffc8rx425sggf5bn51nybpzanq3l"; depends=[mvtnorm polycor Rcpp RcppArmadillo]; }; + CDM = derive2 { name="CDM"; version="8.1-12"; sha256="1cnk19k09cj81ic43rwbvcalvczfca4ncdyy8r1gyc8fzf2glb0i"; depends=[mvtnorm polycor Rcpp RcppArmadillo]; }; CDNmoney = derive2 { name="CDNmoney"; version="2012.4-2"; sha256="1isbvfq0lygs75y1hn3klqms8q7g1xbkcr8fgj75h1c99d4khvm6"; depends=[]; }; CDROM = derive2 { name="CDROM"; version="1.1"; sha256="0mvhqs4m8jp39x1rk31a1sqqmfq1avcnasgh8bizlyxx62igmi1b"; depends=[]; }; CDVineCopulaConditional = derive2 { name="CDVineCopulaConditional"; version="0.1.1"; sha256="1wyy324vrwipdsq0p021bj1gdhyxg09g3dkw8wv5v6rfrrs84m9k"; depends=[combinat VineCopula]; }; CDatanet = derive2 { name="CDatanet"; version="1.0.1"; sha256="1ah992z1icmwm04m812fvhdgsjibvbkp4i2gm6fd0v10vr9iczg8"; depends=[ddpcr Formula formula_tools Matrix Rcpp RcppArmadillo RcppDist RcppProgress]; }; - CEC = derive2 { name="CEC"; version="0.10.3"; sha256="0yypiy5xxrlckly4qpnf1wxg4hwza4y4da6y0jz4ldz918vskaci"; depends=[]; }; CEDA = derive2 { name="CEDA"; version="1.0.2"; sha256="1nsflq7bnrakf564cazskdmba5xfamjyvm0gd5ws51qlxl1ajxv1"; depends=[ggplot2 limma mixtools]; }; CEDARS = derive2 { name="CEDARS"; version="1.90"; sha256="1fngyc08kvilfd2d75gjg0s6c5zvjywym35sk568yzxnsz89b7yy"; depends=[fastmatch jsonlite mongolite readr shiny udpipe]; }; CEGO = derive2 { name="CEGO"; version="2.4.2"; sha256="00nc6c1b6ylqlh6hm8lh8nasz7q12pqckdqbf1yq21khki9ldbll"; depends=[DEoptim fastmatch MASS Matrix ParamHelpers quadprog]; }; CENFA = derive2 { name="CENFA"; version="1.1.1"; sha256="0b1zpazbqynlnmf8k25r5bjmidymskqc96xpmwqkl23xlz1f2x3s"; depends=[doSNOW foreach magrittr pbapply raster Rcpp snow sp]; }; - CEOdata = derive2 { name="CEOdata"; version="1.0.3"; sha256="0cj01qlalpkdk3sdb9434dkf5qakixa3pvnc5pyvfapgpx5n7wp7"; depends=[dplyr haven jsonlite stringr urltools]; }; CEoptim = derive2 { name="CEoptim"; version="1.2"; sha256="0bbjrhl63cbx1rsr5gclbqhjpnjid8ynk2ygaf1chf8z381n7650"; depends=[MASS msm sna]; }; CFAcoop = derive2 { name="CFAcoop"; version="1.0.0"; sha256="1qnqbqh3p8grp6mxhqrwfm1nf1sxhqa6pjxkpf7vk9nx40g815gn"; depends=[Hmisc]; }; CFC = derive2 { name="CFC"; version="1.1.2"; sha256="0k0685cgsd0lm7id6h216r4x236xn3nqj4h906qn2i0kvwmx4nda"; depends=[abind doParallel foreach Rcpp RcppArmadillo RcppProgress survival]; }; @@ -689,8 +670,8 @@ in with self; { CINID = derive2 { name="CINID"; version="1.3-0"; sha256="06n5bwjr44rx0m12xradzaca26rvh01mlimbn0gr3jfzkmyj2f1g"; depends=[]; }; CINNA = derive2 { name="CINNA"; version="1.2.0"; sha256="0pijsr3ciqi9i5pi3ppc8zz573lzwly0mwglz2xdfkwmwy2bzdqi"; depends=[centiserve circlize corrplot dendextend factoextra FactoMineR GGally ggplot2 igraph intergraph network pheatmap plyr qdapTools Rtsne sna viridis]; }; CINmetrics = derive2 { name="CINmetrics"; version="0.1.0"; sha256="1csh22b7ap7isnrjak7yp32hasxq8x4j094i9shrnzsz6sxcmc28"; depends=[]; }; + CIPerm = derive2 { name="CIPerm"; version="0.2.1"; sha256="1injv3fn8v0cnf70020nwjilykg4z65lq1zvqizxfpsn021ilnyy"; depends=[matrixStats]; }; CIS_DGLM = derive2 { name="CIS.DGLM"; version="0.1.0"; sha256="0c7jxfb8gaklf6p83152wb2nszm2p806p3n523xajf4ha368d3kq"; depends=[dglm dplyr ggplot2 RColorBrewer]; }; - CISE = derive2 { name="CISE"; version="0.1.0"; sha256="10mbi4v8dfdc9ngnrrmxpng8fnig5m8nv7799jksbcf6pnj8yv51"; depends=[far gdata glmnet MASS Matrix rARPACK]; }; CITAN = derive2 { name="CITAN"; version="2022.1.1"; sha256="09m9f6s9y7ygbixcymg93vsrqz5jsjp968cjhxnj1v73hzalk168"; depends=[agop DBI RSQLite stringi]; }; CIplot = derive2 { name="CIplot"; version="1.0"; sha256="0hx3dn7d8hvsh75747d9046iqriy3bjnchph8xllnvlhkrm4di1f"; depends=[MASS multcomp]; }; CJAMP = derive2 { name="CJAMP"; version="0.1.1"; sha256="0caznbqy5hsp7h0gkdbv966vfpq8z1khvbizi4vpc9mxck1nqc99"; depends=[optimx]; }; @@ -698,7 +679,7 @@ in with self; { CKLRT = derive2 { name="CKLRT"; version="0.2.3"; sha256="1d8sg3ncns3fpjaghz1h1z9nfrl31v09xijrzzsias8xjrpi191b"; depends=[MASS mgcv nlme Rcpp RcppEigen]; }; CKMRpop = derive2 { name="CKMRpop"; version="0.1.3"; sha256="0d4sai2h2cfzh4hbg8yh7wqb459j948j3s0m218d3gcippm22jpb"; depends=[dplyr ggforce ggplot2 ggraph igraph magrittr purrr Rcpp readr stringr tibble tidygraph tidyr vroom]; }; CLA = derive2 { name="CLA"; version="0.96-2"; sha256="0cfa7zm13bin8hx8ki20kaz8fvkwdaiyl0pjghhld8vr5d3289kq"; depends=[]; }; - CLAST = derive2 { name="CLAST"; version="1.0.0"; sha256="0s90xy9mscfyc9ss84zn771pczbwdrgpfri92h1pdlbs3kw5axp3"; depends=[]; }; + CLAST = derive2 { name="CLAST"; version="1.0.1"; sha256="10g07jdnmbjk5k5xy4c8jh45aw16bjdwik91djiml82ysnbqiq9y"; depends=[]; }; CLME = derive2 { name="CLME"; version="2.0-12"; sha256="161maq22r8wbd6c2dc8b47mh6991vc4iqmjr8g6yqb5gcwca8zhg"; depends=[isotone lme4 MASS nlme openxlsx prettyR shiny stringr]; }; CLONETv2 = derive2 { name="CLONETv2"; version="2.2.1"; sha256="1axkkagydpxdrz7ypw3x7bavaxk34lzj9bsdn1nah9nfr3cdia6h"; depends=[arules dbscan ggplot2 ggrepel sets]; }; CLUSTShiny = derive2 { name="CLUSTShiny"; version="0.1.0"; sha256="19mh5g1ylvlab4xjxw7girxk9zkpxxczhbfijf11b592hbw0qxqk"; depends=[cluster dplyr klaR MASS psycho rmarkdown shiny]; }; @@ -709,21 +690,19 @@ in with self; { CMLS = derive2 { name="CMLS"; version="1.0-0"; sha256="1542qqsl6sksrcpwhnn55d260hkbmy4ikd0v2an96yxk5w95spvn"; depends=[quadprog]; }; CMShiny = derive2 { name="CMShiny"; version="0.1.0"; sha256="0ciis3930yhn4dmazsg2yp7wi9hdfj5slr032x8qfllxis7m4k0w"; depends=[caret e1071 epitools Matrix rmarkdown shiny shinyMatrix]; }; CMapViz = derive2 { name="CMapViz"; version="0.1.0"; sha256="1s7xyp13p7fpbq0bghk07dfv90339kxs7k3343jqhrn8djf3as67"; depends=[dplyr ggplot2 readxl reshape2 scales stringr]; }; - CMatching = derive2 { name="CMatching"; version="2.3.0"; sha256="0q0hplhsamj46z7g6pa7yg1bap5822ka1419yhcip551djhvnpmv"; depends=[lme4 lmtest Matching multiwayvcov]; }; CMplot = derive2 { name="CMplot"; version="4.0.0"; sha256="0xyh75y0c84nnkrv6c8xrvla54w51phgdwn8a69799f2r87z7c81"; depends=[]; }; CNAIM = derive2 { name="CNAIM"; version="1.0.1"; sha256="1k1n4a60mslkrazarn12yaj54kibqsdhj44himpcjvf4kzv8k7vd"; depends=[dplyr htmltools htmlwidgets jsonlite magrittr plyr r2d3 readxl stringr testthat tibble widgetframe]; }; CNLTreg = derive2 { name="CNLTreg"; version="0.1-2"; sha256="07yi0ajil1113663v3gp5d3453r4l9qm442jnpydx4ygvjk7m2ha"; depends=[adlift miscTools nlt]; }; CNLTtsa = derive2 { name="CNLTtsa"; version="0.1-2"; sha256="1vy0jjg6s8yvsvkx4pin183y5bnikm5cmjcpa9znz9dj1w6hwr5r"; depends=[adlift CNLTreg fields nlt]; }; - CNOGpro = derive2 { name="CNOGpro"; version="1.1"; sha256="1frsmhfqrlg1vsa06cabqmrzngq4p5gqwyb9qgnsgg81a9ybm6l8"; depends=[seqinr]; }; CNPS = derive2 { name="CNPS"; version="1.0.0"; sha256="046jd4nh54qaqm85m74nvgj6x83mf8sd76y4dxydy4ydrk4cvz6p"; depends=[]; }; CNVRG = derive2 { name="CNVRG"; version="1.0.0"; sha256="0xr2c5yc9g8hqw5dy5k2y0pm54sdrrbafsc3cpafpwaf803vdrbk"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tibble vegan]; }; CNVScope = derive2 { name="CNVScope"; version="3.7.2"; sha256="03jkivg9jr2dpkf739cba3dsjf56gwvcpq3nqhp42kmmgn50rpiq"; depends=[biomaRt data_table doParallel dplyr foreach GenomicInteractions ggplot2 Hmisc jointseg magrittr Matrix matrixStats OpenImageR plyr RCurl reshape2 rtracklayer shiny stringr tidyr]; }; CNprep = derive2 { name="CNprep"; version="2.0"; sha256="08dpjikx3ldqzw2kwb12q0kbw15qzl09srjdfs0sz9si0x6bfxs6"; depends=[mclust rlecuyer]; }; CNull = derive2 { name="CNull"; version="1.0"; sha256="14hy86zg18hqxi63bfzrpkz70yrzfxp2v2pva5xnrvx9dmlyz820"; depends=[ape Matrix PhyloMeasures Rcpp]; }; - COBRA = derive2 { name="COBRA"; version="0.99.4"; sha256="1r1cw12d7c148pcgcg08bfsr1q1s736kfpyyss6b4d7ny7wgmqy4"; depends=[]; }; COCONUT = derive2 { name="COCONUT"; version="1.0.2"; sha256="1qjrhxn6dkxyimdca3nslaiw3hncfpk1pk4v01mcrnz550z001nz"; depends=[]; }; COINr = derive2 { name="COINr"; version="0.6.1"; sha256="1sq2a9kxn9xlz9dn2ar9dm4czz76vxszdrpciam5mc1x954wjiwj"; depends=[Amelia corrplot dplyr e1071 ggplot2 magrittr matrixStats openxlsx plotly purrr reactable readxl reshape2 rlang rmarkdown shiny stringr tibble tidyr]; }; COMBAT = derive2 { name="COMBAT"; version="0.0.4"; sha256="0m700pl33frdpc9y16y4zyh1ixpardh0r5kmz8a78jrh1acn30id"; depends=[corpcor mvtnorm]; }; + COMIX = derive2 { name="COMIX"; version="0.1.6"; sha256="0x3x09jvplap1wgg4y80gymxzh9mac8np7wmqldhjnmkqs9bwc42"; depends=[Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; COMPoissonReg = derive2 { name="COMPoissonReg"; version="0.7.0"; sha256="144vf3vfn5msc8p67q65frza8xyi9nqccjq47fnv33w5h0d9wlxj"; depends=[Rcpp]; }; CONCUR = derive2 { name="CONCUR"; version="1.3"; sha256="1xkk5mbkysgrclv7km2pf4bnnm99a9q0dkb68vllrdmzsphjmxp9"; depends=[CompQuadForm dplyr mgcv]; }; COR = derive2 { name="COR"; version="0.0.1"; sha256="0flir1mwqqs418hwcwdg72a1r89hamf6zd8jaf8g7hm4lp3i1cgf"; depends=[]; }; @@ -739,13 +718,11 @@ in with self; { CP = derive2 { name="CP"; version="1.6"; sha256="18zblf13riiz3mq3hkvg6vhiwjzpsn6mvgc2p0bqyldy98v4aisd"; depends=[survival]; }; CPAT = derive2 { name="CPAT"; version="0.1.0"; sha256="0zygncwww3cazwmx06bhzq0g41xcqfpw307azdhygc8jmcy6qj71"; depends=[purrr Rcpp RcppArmadillo Rdpack]; }; CPBayes = derive2 { name="CPBayes"; version="1.1.0"; sha256="1kw0r8spqm0s7cb3w5gplw67mhfmcbbf3ligngbary77ghkzirnb"; depends=[forestplot MASS mvtnorm purrr]; }; - CPE = derive2 { name="CPE"; version="1.5.2"; sha256="1m6v104hhxl12zc6lmwm2g5jh3ppyi0m18m1zl30xcid6agayq6v"; depends=[rms survival]; }; CPGLIB = derive2 { name="CPGLIB"; version="1.0.1"; sha256="18gf0l7fqfi4vl0aylna6s7n6f4kwlaxkqnbdy2qgrvr5vs2j0qn"; depends=[Rcpp RcppArmadillo]; }; CPMCGLM = derive2 { name="CPMCGLM"; version="1.2"; sha256="07hx2ik5zg05w1h6i94398mp54q958phws9ydgp6syjqlp9dpf1p"; depends=[abind mvtnorm plyr]; }; CPNCoverageAnalysis = derive2 { name="CPNCoverageAnalysis"; version="1.1.0"; sha256="0w4yw6d41sgl1ypcmp3bxgz4p3cpnbqx73id17zklid4avr3y9yi"; depends=[]; }; CPP = derive2 { name="CPP"; version="0.1.0"; sha256="1kdf43pnavjbmxkvrj78fiwl0ykln9x9ck8pcivhj9q5rsfbhbh4"; depends=[ineq kappalab mc2d]; }; CPsurv = derive2 { name="CPsurv"; version="1.0.0"; sha256="1r68pp3jbcbwgfac132h30qx6ah780aychr49rlncn17xbdalxsh"; depends=[muhaz survival]; }; - CRAC = derive2 { name="CRAC"; version="1.0"; sha256="0vnqmmmwakx5jnzqp20dng35p7rvmz3ypm2m7bs41m8nhh2wq1xa"; depends=[]; }; CRANsearcher = derive2 { name="CRANsearcher"; version="1.0.0"; sha256="09gw1s28gb0l2cn4w3asl6zlr7wfacxwafbdrayajwckyfkjl5dl"; depends=[curl dplyr DT lubridate miniUI shiny shinyjs stringr]; }; CREAM = derive2 { name="CREAM"; version="1.1.1"; sha256="1lccpwn6c5pmykgf689gvvpqdcilkys4vclpxjhllhanjrfhcs3q"; depends=[]; }; CRF = derive2 { name="CRF"; version="0.4-3"; sha256="0jlcc1ffd2z7sz1szbi4vrp5rihmcp18bsw27x02ivi6l21nyivf"; depends=[Matrix]; }; @@ -756,7 +733,7 @@ in with self; { CSESA = derive2 { name="CSESA"; version="1.2.0"; sha256="0pv6iabq1w22qbhlsbckdvva4n7igpzrjnrahmq83a6wxgvjbf5j"; depends=[Biostrings]; }; CSFA = derive2 { name="CSFA"; version="1.2.0"; sha256="1nkyhk8qhrrlx8v26yw86l954m4xfcxma4pqbhgw95jvqql5h3li"; depends=[elasticnet fabia FactoMineR pls randomcoloR snowFT]; }; CSGo = derive2 { name="CSGo"; version="0.6.7"; sha256="19awbblkx0g58gvd43xs1dmcsn588k185njw3fri8xxbn26xp5jy"; depends=[dplyr extrafont furrr future fuzzyjoin ggplot2 httr jsonlite magrittr purrr stringr]; }; - CSHShydRology = derive2 { name="CSHShydRology"; version="1.2.0"; sha256="0wx17hi99ciys5mrzcqh1ma99hfa5l533637kcf6gbcy270a09aw"; depends=[dplyr fields ggplot2 ggspatial here httr jsonlite Kendall lubridate magrittr plotKML plotrix raster sf sp stringr tidyhydat timeDate whitebox]; }; + CSHShydRology = derive2 { name="CSHShydRology"; version="1.2.1"; sha256="13gg1s0180a2cnbq8pscn47d84nkqilgcbnyyka8jbs4przm8l9a"; depends=[dplyr fields ggplot2 ggspatial here httr jsonlite Kendall lubridate magrittr plotrix raster sf stringr tidyhydat timeDate whitebox]; }; CSIndicators = derive2 { name="CSIndicators"; version="0.0.1"; sha256="1d0mdbgg4y9773di8a86c8lss5f29c936pa7qv7vvznyc7mxkqzz"; depends=[ClimProjDiags multiApply s2dv]; }; CSMES = derive2 { name="CSMES"; version="1.0.0"; sha256="1ddr2b39d7nwan6dqf5xx9h6gzfxxk50r1d9vbpb9hc8a7d15vnp"; depends=[caTools data_table mco ROCR rpart zoo]; }; CSTE = derive2 { name="CSTE"; version="2.0.0"; sha256="0r38pvd83aw9zrq43malw50vlbnknh3b53x3ydj0wxrk95wsmy46"; depends=[dfoptim fda locpol Rcpp survival]; }; @@ -765,7 +742,6 @@ in with self; { CSclone = derive2 { name="CSclone"; version="1.0"; sha256="0lqsqsgh2sf44fr1r7g179556v294yr1wy7x4320g7adxshrwyh5"; depends=[DNAcopy lpSolve mcclust moments]; }; CSeqpat = derive2 { name="CSeqpat"; version="0.1.2"; sha256="1nqk873cagpn4fba4rmyzb6hni1p5lqcvsr9givrcm0gfx756w1h"; depends=[NLP tm]; }; CTAShiny = derive2 { name="CTAShiny"; version="0.1.0"; sha256="18qw8nx1r4gwlxj9zxn4hllpn29fv3i4fgwyl5fh3qsv9hmbvi0x"; depends=[epitools rpivotTable shiny shinyMatrix]; }; - CTD = derive2 { name="CTD"; version="1.0.0"; sha256="0hv3g47sa66xwikrwmc61mdlqlh2p6hrvf0bbp2r71wf2842idqb"; depends=[gmp igraph]; }; CTM = derive2 { name="CTM"; version="0.2"; sha256="0h1lpygjq46nwkn4km49bngvxmgrnh3csrfln3yjr9yyzs7d3lz1"; depends=[jiebaR plyr]; }; CTP = derive2 { name="CTP"; version="3.0.1"; sha256="02f423y7yx0hchzghfdbrrljsfq3af1wcbvk8z1q5wyzq99xcag5"; depends=[clinfun diagram dplyr emmeans Gmisc magrittr MASS shape survival]; }; CTShiny = derive2 { name="CTShiny"; version="0.1.0"; sha256="0lmzf02w8j4rgz1kh7jwvl0sb6y38r56gwmsf7pkc00w1dskb722"; depends=[caret dplyr e1071 party rhandsontable rmarkdown rpart rpart_plot shiny]; }; @@ -781,10 +757,8 @@ in with self; { CVEK = derive2 { name="CVEK"; version="0.1-2"; sha256="03z4s0szi8rl3izc651rvrhl2z247aaflyphzizplgmpw81xv1ry"; depends=[limSolve MASS]; }; CVR = derive2 { name="CVR"; version="0.1.1"; sha256="1y8m9r409jq5h6xx1rvz7c7aj882jldfxly89zf3cvp2qg3jh7rj"; depends=[PMA Rcpp RcppArmadillo]; }; CVST = derive2 { name="CVST"; version="0.2-3"; sha256="0bgk0d6w3dyhb5s30idnp6jpb3m8wf3b79wqlg127wwm0cird8pg"; depends=[kernlab Matrix]; }; - CVThresh = derive2 { name="CVThresh"; version="1.1.1"; sha256="19d7pslzj8r3z5gn3cplpz2h2ayz6k1nrfx3s2b7a8w1il3vmi69"; depends=[EbayesThresh wavethresh]; }; - CVTuningCov = derive2 { name="CVTuningCov"; version="1.0"; sha256="1bwzis82lqwcqp2djy4bnd3vvjr47krlv3pdc5msh12wcs0xhs7n"; depends=[]; }; + CVThresh = derive2 { name="CVThresh"; version="1.1.2"; sha256="14fgm5kzp1sscklv2pra800p12ga2hlqmm8s6zs5hdhlyvf0kj6v"; depends=[EbayesThresh wavethresh]; }; CVXR = derive2 { name="CVXR"; version="1.0-10"; sha256="0cklfwsr3p4x4w7n6y3h3m4i3si8q0pwyp2vzv7kzawrmqc80484"; depends=[bit64 ECOSolveR gmp Matrix osqp R6 Rcpp RcppEigen Rmpfr scs]; }; - CVarE = derive2 { name="CVarE"; version="1.1"; sha256="132bsqvdhalifn47xka23ikas1axxkg4jw8yja6ba8dflb8r753i"; depends=[mda]; }; CVcalibration = derive2 { name="CVcalibration"; version="1.0-1"; sha256="0ca582fnysrldlzxc3pihsph9pvdgygdh7sfzgxvr5fc3z1jbjzb"; depends=[]; }; CVglasso = derive2 { name="CVglasso"; version="1.0"; sha256="1bh09cd0yabhqv5yfahhvayx3f09yqapzl1yr9nc9xqwyx1d0cfd"; depends=[doParallel dplyr foreach ggplot2 glasso]; }; CVrisk = derive2 { name="CVrisk"; version="1.1.0"; sha256="0xnpnjncdal2akdnkb52s7r82p2di0rc48h6nswbclkl5xf3snd6"; depends=[]; }; @@ -798,7 +772,7 @@ in with self; { CallEshotgun = derive2 { name="CallEshotgun"; version="0.2.0"; sha256="09xi0867vi0x244ahg9rrm2rr6f9x7fzrmlifb098akik2pvfn20"; depends=[reticulate]; }; CamelUp = derive2 { name="CamelUp"; version="2.0.3"; sha256="1d3ywb4bxnn149api6lqry8q9lasng79hzka9ndr5cv38pkbvva9"; depends=[data_table dplyr ggplot2 magrittr Rcpp shiny]; }; CancerGram = derive2 { name="CancerGram"; version="1.0.0"; sha256="1p612dbn6dxn3nz8m0pzlsbczg3f8gwqk9q0fnxbcdlbll0vf2k0"; depends=[biogram devtools dplyr pbapply ranger shiny stringi]; }; - Canek = derive2 { name="Canek"; version="0.2.0"; sha256="07f1cs3vd00jkfkm1iz8ciwf6d8vhrbxvp4krmjng9apxjhgamfc"; depends=[bluster FNN fpc igraph irlba matrixStats numbers]; }; + Canek = derive2 { name="Canek"; version="0.2.1"; sha256="1qqlxachv84a6d9c2akzqws3d8zjql0wzfinqh2d855avn3sk8s5"; depends=[bluster FNN fpc igraph irlba matrixStats numbers]; }; Canopy = derive2 { name="Canopy"; version="1.3.0"; sha256="0979hpphzhf4v71jx0shh3l8nffmpsn9l6f8ip2wxzcyx571i1wd"; depends=[ape fields pheatmap scatterplot3d]; }; CarletonStats = derive2 { name="CarletonStats"; version="2.0"; sha256="0pgzvw6gf8kjv8ndprwp4wlgdgh5sb75ga8z5syfw57fb05v7ac3"; depends=[]; }; Carlson = derive2 { name="Carlson"; version="1.0.1"; sha256="1flh1161hx62xsgw0k7rncvwgzgsay5xwihcykyypwbdlccmqhiw"; depends=[]; }; @@ -812,6 +786,7 @@ in with self; { CatastRo = derive2 { name="CatastRo"; version="0.2.1"; sha256="1ccigv8d3qrh2r99c2hkgbnx2xnagq692l0s3sw9gmqcb5zs6wd8"; depends=[dplyr httr lifecycle mapSpain rappdirs sf stringi terra tibble xml2]; }; CateSelection = derive2 { name="CateSelection"; version="1.0"; sha256="194lk6anrb05gaarwdg8lj5wm6k61b4r702cja3nf3z91i8paqi7"; depends=[]; }; CauchyCP = derive2 { name="CauchyCP"; version="0.1.0"; sha256="012aw8cgrwwcsbs93nfsdlv1j72mc96gaxvdrhs9njqd9anamsgl"; depends=[survival]; }; + CausCor = derive2 { name="CausCor"; version="0.1.1"; sha256="1mfz470fs3m50sm8zxi3bzjb0wgky6k50m7nf800wpkjx34has0p"; depends=[cowplot dplyr ggplot2 magrittr WriteXLS]; }; CausalGAM = derive2 { name="CausalGAM"; version="0.1-4"; sha256="1riz11hfg96iks7734rg692l75nfrd3hmr9gw563j27rkk1nfkl6"; depends=[gam]; }; CausalGPS = derive2 { name="CausalGPS"; version="0.2.7"; sha256="07izwbz9j664p9c210d21i86w41ql5fs5fwmm7kbwbczdzx7kh7q"; depends=[data_table earth gam ggplot2 gnm KernSmooth logger MASS polycor ranger Rcpp rlang SuperLearner tidyr wCorr xgboost]; }; CausalImpact = derive2 { name="CausalImpact"; version="1.2.7"; sha256="1sbi58zs39cxyq4h8d9h9w2s2qbnj5jkpc68cibwxlzkyllaks52"; depends=[assertthat Boom bsts dplyr ggplot2 zoo]; }; @@ -824,7 +799,6 @@ in with self; { CenBAR = derive2 { name="CenBAR"; version="0.1.1"; sha256="1k8ycm2rzwadr5bg6m0ay81c5v4wjg04yigch6a1w7g75gw01q50"; depends=[cvTools foreach glmnet MASS mvtnorm survival]; }; CensMFM = derive2 { name="CensMFM"; version="2.11"; sha256="0rq0a9041ipl6pjm15plb1hjz3a3fk27wzj94z91wf1jsmdj3j9z"; depends=[ggplot2 gridExtra MomTrunc mvtnorm tlrmvnmvt]; }; CensRegMod = derive2 { name="CensRegMod"; version="1.0"; sha256="0qqwkxn8knhcjb6mph7mp7mma56zxslbvkfgfajq2lq4gbg901y4"; depends=[]; }; - CensSpatial = derive2 { name="CensSpatial"; version="2.59"; sha256="19q5s16hfw4dkp6j25v0z7g60zmz0fw9mxyiv7nb2k3k39iypgzm"; depends=[geoR lattice moments msm mvtnorm numDeriv optimx psych raster Rcpp tlrmvnmvt tmvtnorm]; }; Census2016 = derive2 { name="Census2016"; version="0.2.0"; sha256="1c88jmd565v19w8dbvai10f9y5lyfmzsxsjblc3gdykf9kharvcq"; depends=[data_table]; }; CepLDA = derive2 { name="CepLDA"; version="1.0.0"; sha256="15vhk7l5mw2kicw2x60r4z71hc415g8kaf2p06jgf7ykxmzkj7kg"; depends=[astsa class MASS multitaper]; }; CerioliOutlierDetection = derive2 { name="CerioliOutlierDetection"; version="1.1.9"; sha256="0s3pd4y165v69m4wmg9jlc7dl4gz64la9yic67l3n4242wa84p19"; depends=[robustbase]; }; @@ -839,7 +813,7 @@ in with self; { Chaos01 = derive2 { name="Chaos01"; version="1.2.1"; sha256="1wk70l1y0yzbjcjp0r334l1q3hzki0vzn6wbza97mq9pz8wp050r"; depends=[]; }; ChaosGame = derive2 { name="ChaosGame"; version="1.1"; sha256="1gwrym3vjcqlj0ih479ipbajypajy9ga9sr3laj7g5zxx3cm4y4c"; depends=[colorRamps ggplot2 gridExtra plot3D RColorBrewer rgl sphereplot]; }; ChargeTransport = derive2 { name="ChargeTransport"; version="1.0.2"; sha256="0mq06ckp3yyj5g1z2sla79fiqdk2nlbclm618frhqcgmq93h0vha"; depends=[]; }; - CheckDigit = derive2 { name="CheckDigit"; version="0.1-1"; sha256="0091q9f77a0n701n668zaghi6b2k3n2jlb1y91nghijkv32a7d0j"; depends=[]; }; + CheckDigit = derive2 { name="CheckDigit"; version="1.0.0"; sha256="19apm7hr1k693w2ybv7vmaw5mxnhdjggpnr4m8phyvv8by345rxs"; depends=[]; }; ChemoSpec = derive2 { name="ChemoSpec"; version="6.1.3"; sha256="0h2jc0hdyi58hmg64vg7qijs7rp05ssxm4p8h3fv70jr58n94633"; depends=[ChemoSpecUtils ggplot2 magrittr patchwork plotly plyr readJDX reshape2]; }; ChemoSpec2D = derive2 { name="ChemoSpec2D"; version="0.5.0"; sha256="05k46fn2i0ipn14zignxvykr8018wxql26x2r5b479hbkg1rk5s4"; depends=[ChemoSpecUtils colorspace ggplot2 readJDX]; }; ChemoSpecUtils = derive2 { name="ChemoSpecUtils"; version="1.0.0"; sha256="15w9v4g7myw0ygd9dvalz900yzgz5j2jnmw4j3zfp04fgm3wgbfq"; depends=[ggplot2 ggrepel magrittr plotly plyr]; }; @@ -853,7 +827,7 @@ in with self; { CircSpaceTime = derive2 { name="CircSpaceTime"; version="0.9.0"; sha256="0dplgm5x4c1xxnv6062n643mn5zh0najw3f41pv2qafc1lil4wx8"; depends=[circular coda ggplot2 Rcpp RcppArmadillo RInside]; }; CircStats = derive2 { name="CircStats"; version="0.2-6"; sha256="07bg4zrs2iqh0pmi44pybi8hlvnxwcaa5zpg85rmf55kflxxkzlf"; depends=[boot MASS]; }; CircularDDM = derive2 { name="CircularDDM"; version="0.1.0"; sha256="1wxdjj7dndvhvl00cykcrwmw9f7halsg3a0db56kp2mhf54rj37z"; depends=[Rcpp RcppArmadillo]; }; - CityPlot = derive2 { name="CityPlot"; version="2.0"; sha256="0lskgxmagqjglvpq39hgbygkf4qp28i2bj6b4m2av1s3pzb4465g"; depends=[]; }; + CircularSilhouette = derive2 { name="CircularSilhouette"; version="0.0.1"; sha256="03214kqpnfjr9swafy1yjwr2jjj3iafb6ikn2sd45k2cx4xvprr3"; depends=[OptCirClust Rcpp Rdpack]; }; CityWaterBalance = derive2 { name="CityWaterBalance"; version="0.1.0"; sha256="0nvm6bv2cxszjf33xgn1xcvhrgrgbdcar0jahwf7bs03gdlpmgi1"; depends=[dataRetrieval dplyr EcoHydRology geoknife lubridate reshape2 tgp xts zoo]; }; Ckmeans_1d_dp = derive2 { name="Ckmeans.1d.dp"; version="4.3.4"; sha256="1lr9pang73hzmwlak9hc9sgsnqkw06ipfarfdbxz5ycibasvb4a6"; depends=[Rcpp Rdpack]; }; Claddis = derive2 { name="Claddis"; version="0.6.3"; sha256="0wq34n6vj5sdc22yf9p4g9iy8ssgr4kkrsr2ak4sqahadwgngl8i"; depends=[ape clipr geoscale phytools strap]; }; @@ -861,7 +835,7 @@ in with self; { ClamR = derive2 { name="ClamR"; version="2.1-1"; sha256="0raz1n79g24a9mc93zj49r20xcmdziw6vvcw5sd3qyjp1ycia13c"; depends=[]; }; ClassComparison = derive2 { name="ClassComparison"; version="3.1.8"; sha256="0fd5s4697pvj295fzvvn5mislf42wfzrcvks17v98388rph586gl"; depends=[Biobase oompaBase]; }; ClassDiscovery = derive2 { name="ClassDiscovery"; version="3.4.0"; sha256="06l7jvpcdynij05hb0ka33zpg7xdyqyzfzx24s0bnlspp83yc62s"; depends=[Biobase cluster mclust oompaBase oompaData]; }; - CleanBSequences = derive2 { name="CleanBSequences"; version="0.4.0"; sha256="12s24v2kfyc32pm34ibw58zzjqhzwlrqrkhl0m70jcqvn50b5r98"; depends=[Biostrings]; }; + CleanBSequences = derive2 { name="CleanBSequences"; version="1.4.0"; sha256="194590508s0j5z6srm2vmv6aa4d2fia4apbd3zmd8ria27ppcrfg"; depends=[Biostrings]; }; ClickClust = derive2 { name="ClickClust"; version="1.1.5"; sha256="0b46f453mffg4ym6yvmh7g3v05mc9gphwfra75j28y1425s87yvw"; depends=[]; }; ClickClustCont = derive2 { name="ClickClustCont"; version="0.1.7"; sha256="1caymvpwvxq4rirnjm2kwzvqm1pl01rdc3785k8mq4k2m0n6l2rz"; depends=[gtools]; }; ClickHouseHTTP = derive2 { name="ClickHouseHTTP"; version="0.1.1"; sha256="19hn4zi5dlgkpqd7wkfg1aln21cks1pc66pb0xs4nr2sp6gmrpg0"; depends=[arrow data_table DBI httr jsonlite]; }; @@ -895,7 +869,7 @@ in with self; { ClusterRankTest = derive2 { name="ClusterRankTest"; version="1.0"; sha256="01gzalhibqcdx3a6yc2cm1v77rscva73v5m5m0qkrgqdp9c8ph2a"; depends=[]; }; ClusterStability = derive2 { name="ClusterStability"; version="1.0.3"; sha256="1laa5m3y1rc7jr8q3i9qb3izs7qmadz169w9xm8q3mm3834ngn9b"; depends=[cluster clusterCrit copula Rcpp WeightedCluster]; }; ClusteredMutations = derive2 { name="ClusteredMutations"; version="1.0.1"; sha256="1n31nnvpjh1faw751k8m3ga3wfl0yhdpnszwckqhfzlma1jr8z04"; depends=[seriation]; }; - Clustering = derive2 { name="Clustering"; version="1.7.5"; sha256="1j3warx8kjn2nv4bl15nhbkr8xz45akds79c5x1qh6b4bvhn45jk"; depends=[advclust amap apcluster cluster ClusterR data_table doParallel dplyr foreach future ggplot2 gmp pracma pvclust shiny sqldf toOrdinal xtable]; }; + Clustering = derive2 { name="Clustering"; version="1.7.6"; sha256="1clcgl6avvw3ga5zj93qnbw2n6s3x0r332d4bj66vlwlldmm606l"; depends=[advclust amap apcluster cluster ClusterR data_table doParallel dplyr foreach future ggplot2 gmp pracma pvclust shiny sqldf toOrdinal xtable]; }; CoClust = derive2 { name="CoClust"; version="0.3-2"; sha256="04xv807785xv9kdspsspx1302ardv8gda06kd590lgawjixai7dh"; depends=[copula gtools]; }; CoDiNA = derive2 { name="CoDiNA"; version="1.1.2"; sha256="1zjj86z8ica9j0x2nfyq9y6nyp54w07dwskcsg7z6kqibrkfvaq9"; depends=[data_table igraph magrittr plyr reshape2 visNetwork]; }; CoFRA = derive2 { name="CoFRA"; version="0.1002"; sha256="0ldf84dxaanww3qkf64mz5gv3yv2rjp9m6dy64xckds66vw6x0m3"; depends=[gplots stringr]; }; @@ -914,7 +888,6 @@ in with self; { CollapseLevels = derive2 { name="CollapseLevels"; version="0.3.0"; sha256="1d2grxh95893j260igh4yh2z3rm3zymlpadqyp6w3na91birazb4"; depends=[dplyr ggplot2 lazyeval magrittr]; }; CollocInfer = derive2 { name="CollocInfer"; version="1.0.4"; sha256="1iwf5g2y7i0j8dc19hdhya4m6g47jj968glnclj7a2yaq2yx37cj"; depends=[deSolve fda MASS Matrix spam]; }; ColorNameR = derive2 { name="ColorNameR"; version="0.1.0"; sha256="0gqyph3f6mhwg6zwc5bgfglpmg152a4kd2wrmp9jn18wvg8wd03g"; depends=[dplyr magrittr purrr rlang]; }; - ColorPalette = derive2 { name="ColorPalette"; version="1.0-1"; sha256="1dsj5njikx3qm2lnamqqg4qgwwyr11fwx9s5sdi7dkfx3nmf6dac"; depends=[]; }; ComICS = derive2 { name="ComICS"; version="1.0.4"; sha256="0brsb7y1bg23sdpxs4j1y3xdgr1q7iinxnnp17rravw72l991xqa"; depends=[glmnet]; }; CombinS = derive2 { name="CombinS"; version="1.1-1"; sha256="06g41zbjl54cbhhs8q7l4bbvszclvbxn3m2dqg800d6ghs9vgl6v"; depends=[]; }; CombinePValue = derive2 { name="CombinePValue"; version="1.0"; sha256="0mlngyz2nq7s39javnnjbb5db93c5sg9daw2szng83mbyfza4hv2"; depends=[]; }; @@ -923,7 +896,6 @@ in with self; { CommT = derive2 { name="CommT"; version="0.1.1"; sha256="1kimm8z3k7p5lxsjnkb203js2rqn09grywxs890fab1hhgssgv2r"; depends=[ape ggplot2 gridExtra phangorn reshape]; }; CommonJavaJars = derive2 { name="CommonJavaJars"; version="1.0-6"; sha256="0l1zqygklv1s3xr6pjjrji3wmyqg7258qvgwf9c2qjim8p8y8lsr"; depends=[]; }; CommonMean_Copula = derive2 { name="CommonMean.Copula"; version="1.0.4"; sha256="0c4la7sn3aynmj9qcz5d9gn9k3y5b38bjff0mfa5qccdb8rdkdhp"; depends=[mvtnorm pracma]; }; - CommunityCorrelogram = derive2 { name="CommunityCorrelogram"; version="1.0"; sha256="1wkrm5lil595sc4ih3qsf4sgvfipzlav0n7339ixqw9zxm2pg4nj"; depends=[vegan]; }; Comp2ROC = derive2 { name="Comp2ROC"; version="1.1.4"; sha256="06hpbid9z1pzg7k4gqp2zn8l7sm375z32fsn54i27qbl3inp7m2d"; depends=[boot ROCR]; }; CompAREdesign = derive2 { name="CompAREdesign"; version="1.9"; sha256="0jwq56y6h1jfrh0qm4z52wpia157g1yx003aa08mdjdk0xbdc8n5"; depends=[copula ggplot2 numDeriv rootSolve]; }; CompDist = derive2 { name="CompDist"; version="1.0"; sha256="02c18ksk6clv674yh79bzg3mh9hymzhal51j6g0rnvqd5ra8g66c"; depends=[actuar fExtremes numDeriv PearsonDS rmutil VGAM]; }; @@ -931,7 +903,6 @@ in with self; { CompModels = derive2 { name="CompModels"; version="0.2.0"; sha256="058yvwb7p6rj6g1hcwgdzgjv0lwg7m5hgrv1pjfi4dskaibd4k17"; depends=[]; }; CompQuadForm = derive2 { name="CompQuadForm"; version="1.4.3"; sha256="1i30hrqdk64q17vsn918c3q79brchgx2wzh1gbsgbn0dh1ncabq4"; depends=[]; }; CompR = derive2 { name="CompR"; version="1.0"; sha256="1k4q0yanvhdh3ksia7d42lxky19yci5vxhmi6h716g9sxzfsjk6b"; depends=[MASS]; }; - CompRandFld = derive2 { name="CompRandFld"; version="1.0.3-6"; sha256="1yr1d97l6yc07jwh30j26gda15pjfcwx2z3w55dh3nr15vds0qcp"; depends=[fields mapproj maps RandomFields scatterplot3d spam]; }; Compack = derive2 { name="Compack"; version="0.1.0"; sha256="1bl1drbkak7r7scfiij6sf8fjzq01y3p05mjlkknhi9k1l6jq0mi"; depends=[fda MASS orthogonalsplinebasis plyr Rcpp RcppArmadillo]; }; CompareCausalNetworks = derive2 { name="CompareCausalNetworks"; version="0.2.6.2"; sha256="0r8gdr834jqqwiq9h4yz19gcg92rbdd4fr3fwi083vfjml82f0v0"; depends=[data_table expm Matrix]; }; CompareTests = derive2 { name="CompareTests"; version="1.2"; sha256="1z96kh851bpr2szgyjszkpv6m5ma6abz7hrm50fgvfpgxkj7f4yi"; depends=[]; }; @@ -939,19 +910,19 @@ in with self; { ComparisonSurv = derive2 { name="ComparisonSurv"; version="1.0.9"; sha256="1xvxkj0i59fq05df6szx4k32w2447mxcx3877l2myag4x6i6c74l"; depends=[muhaz survival survRM2 TSHRC]; }; Compind = derive2 { name="Compind"; version="2.3"; sha256="0im7wpgigkd3nwg6crnp4c3ndd3b6763f0f4v512r9a13hm48ms0"; depends=[Benchmarking boot GPArotation Hmisc lpSolve MASS nonparaeff np psych smaa spdep]; }; ComplexUpset = derive2 { name="ComplexUpset"; version="1.3.3"; sha256="1sk4v5kc2wkgfaws0hjlp30mngm907r5gz1iglf68j46lfs9jbsv"; depends=[colorspace ggplot2 patchwork scales]; }; - Compositional = derive2 { name="Compositional"; version="5.5"; sha256="1xn62q4h8m4fgs3hi5s676jrfn7dmfm16wzkcccxr9ssp25vkmbz"; depends=[codalm Directional doParallel emplik energy FlexDir foreach glmnet MASS mda mixture NlcOptim nnet pchc RANN Rfast Rfast2 sn]; }; + Compositional = derive2 { name="Compositional"; version="5.6"; sha256="0g7b4ibiffhsn4184y7hh8vjy9l1bbw29bafwc5qmszngrcjhnww"; depends=[codalm Directional doParallel emplik energy FlexDir foreach glmnet MASS mda mixture NlcOptim nnet pchc RANN Rfast Rfast2 sn]; }; CompoundEvents = derive2 { name="CompoundEvents"; version="0.1.0"; sha256="03shw3016xc41a6by8pnpqs7mmnhs0qmg5aqd4hlfcy3dv2w9wkf"; depends=[]; }; Compounding = derive2 { name="Compounding"; version="1.0.2"; sha256="1xlb3ylwjv70850agir0mx79kcvs43h0n1sm22zcny3509s2r7lf"; depends=[hypergeo]; }; ConConPiWiFun = derive2 { name="ConConPiWiFun"; version="0.4.6.1"; sha256="1ziy646lbx297kia797xjxa8hyl826x1hiighyjslvnlvrhapx08"; depends=[Rcpp]; }; - ConNEcT = derive2 { name="ConNEcT"; version="0.7.26"; sha256="00hqbixp2pzsbnv51l8imbqxkvb5z78fa6xzx1sw5azxllh8f70l"; depends=[qgraph Rlab]; }; + ConNEcT = derive2 { name="ConNEcT"; version="0.7.27"; sha256="1j66qmvgm9yrgnrcg600s25haq9imcshmy6fv9vd84mhy21md85h"; depends=[qgraph]; }; ConR = derive2 { name="ConR"; version="1.3.0"; sha256="1q93x2b7a2jgkybazk24x8gvwvjjvkhi1gy5zx1sc2f4arm73myq"; depends=[doSNOW fields foreach geosphere raster rgdal rgeos rnaturalearth sf snow sp tibble writexl]; }; ConSpline = derive2 { name="ConSpline"; version="1.2"; sha256="16r0v0llj0pri69jqxribp8dpzh6yn6acpq20aaky14fyh3i4q7x"; depends=[coneproj]; }; Conake = derive2 { name="Conake"; version="1.0"; sha256="1rj1rv8r53516jqhwp9xqqwjxh4gx1w47c0bw59f87wiy5pbchpf"; depends=[]; }; - ConcordanceTest = derive2 { name="ConcordanceTest"; version="1.0.0"; sha256="03d780y7wik2j9l4bq50j8c3g4j3zh8wzq4al6zjch9g9krdankz"; depends=[Rglpk]; }; - CondCopulas = derive2 { name="CondCopulas"; version="0.1.1"; sha256="03jqx5ds81arfgx1w3568a85x0fa7jhp5x3sp28a8in76db08095"; depends=[data_tree glmnet nnet ordinalNet pbapply pcaPP statmod tree VineCopula]; }; + ConcordanceTest = derive2 { name="ConcordanceTest"; version="1.0.2"; sha256="1dmvfm3ng9hwalhhwc5qw215zcjd37vmxlf1gc88fhi0cmj2k9hg"; depends=[Rglpk]; }; + CondCopulas = derive2 { name="CondCopulas"; version="0.1.2"; sha256="07drchcihzqql10fy5adzxbp28ik2xaljx7rv7vr5g9mv07g9klx"; depends=[data_tree glmnet nnet ordinalNet pbapply statmod tree VineCopula wdm]; }; CondIndTests = derive2 { name="CondIndTests"; version="0.1.5"; sha256="0km4z8wnj5msg1pmphk2fccbw1cidsxv174817lwcyii9nf5iwsm"; depends=[caTools kernlab lawstat MASS mgcv mize pracma quantregForest randomForest RPtests]; }; CondReg = derive2 { name="CondReg"; version="0.20"; sha256="1ffnrjfjcb66i9nyvidkcn4k9pcj4r7xanjwzcxcrj2qm39apkqx"; depends=[]; }; - CondiS = derive2 { name="CondiS"; version="0.1.1"; sha256="16nhqbcmq1swlhbal3q7i11y6kk7r48nxfqgzgbyrqf9qwc7jfpd"; depends=[caret kernlab purrr survival survminer tidyverse]; }; + CondiS = derive2 { name="CondiS"; version="0.1.2"; sha256="19l26ajzbi58cnim1kgxb5wrilqpvz6znv01zd42s3w6899km28b"; depends=[caret kernlab purrr survival survminer tidyverse]; }; ConfIntVariance = derive2 { name="ConfIntVariance"; version="1.0.2"; sha256="0xm3vh3vmf16faa3934100rnrg4rvlqkgjlsqa2smzcvy5vb86z4"; depends=[]; }; ConfigParser = derive2 { name="ConfigParser"; version="1.0.0"; sha256="0jjh6gz5qcqhirzkmg7a4lnf8n3mjly15x2mvbvdpjkk7iv3w9m3"; depends=[ini R6]; }; ConformalSmallest = derive2 { name="ConformalSmallest"; version="1.0"; sha256="0r74hbz0dmz69zsw2vdl858vj27p6f2xcpv1l1il4r52cmshg1h8"; depends=[glmnet MASS mvtnorm quantregForest]; }; @@ -964,7 +935,7 @@ in with self; { ConsRank = derive2 { name="ConsRank"; version="2.1.2"; sha256="0vdjp2kawnmwz5rxp1p489l6pq61byyzpbs0w9m4rbal3whn65hf"; depends=[gtools proxy rgl rlist]; }; ConsRankClass = derive2 { name="ConsRankClass"; version="1.0.1"; sha256="02n6a3affm72vfhsjz90jl8x0qrvxsimlm1ng313s4zla515h8ap"; depends=[ConsRank janitor pracma proxy rlist]; }; ConsReg = derive2 { name="ConsReg"; version="0.1.0"; sha256="0ck188ahzprzvqdh2q05bcg9b68dw3xiqqb1xirbm4rp5chyr419"; depends=[adaptMCMC data_table DEoptim dfoptim FME forecast GA GenSA ggplot2 MCMCpack Metrics nloptr Rcpp rlang Rsolnp]; }; - ContaminatedMixt = derive2 { name="ContaminatedMixt"; version="1.3.6"; sha256="0bkpzx6a1w4560djj3r65y2z96h6wp8s0wscrf8mas4ianijaaf3"; depends=[caret mclust mixture mnormt mvtnorm]; }; + ContaminatedMixt = derive2 { name="ContaminatedMixt"; version="1.3.7"; sha256="0shv6237yq4xqi78cz955bv2xjvq3f5z577nd1v55wfya7f3n50v"; depends=[caret mclust mixture mnormt mvtnorm]; }; ContourFunctions = derive2 { name="ContourFunctions"; version="0.1.1"; sha256="00p5bdiq8hj95lkr86iwyh50qw0d0d4gs9hhbzcix6lwn8dwqd3s"; depends=[]; }; ConvergenceClubs = derive2 { name="ConvergenceClubs"; version="2.2.1"; sha256="0mn0lnycz5pi821q52g1njjs2pcmvv8yynr13bh237c8cashk2n3"; depends=[lmtest sandwich]; }; ConvergenceConcepts = derive2 { name="ConvergenceConcepts"; version="1.2.2"; sha256="1pvcl0bgd4anrbn6wqxsd1s23ycsc7jhrk94yzwx67xx0qs9mmrw"; depends=[lattice tkrplot]; }; @@ -973,6 +944,7 @@ in with self; { CoopGame = derive2 { name="CoopGame"; version="0.2.2"; sha256="0i4yw2nznmcps9s9f592nbs8dvncb0w2bynvsfkp21lzd4pfsp4n"; depends=[geometry gtools rcdd]; }; CoordinateCleaner = derive2 { name="CoordinateCleaner"; version="2.0-20"; sha256="1n1k97imcg3n8nvl9759nqbzirxs011micx4qj2sf1d0bvnlrzs1"; depends=[dplyr geosphere ggplot2 raster rgbif rgdal rgeos rnaturalearth sp tidyselect]; }; CopCTS = derive2 { name="CopCTS"; version="1.0.0"; sha256="1j0bhkjk181y9k69442diswgwax5whmh5vfqydhf3b1r5ll1wkm3"; depends=[copBasic copula msm]; }; + CopSens = derive2 { name="CopSens"; version="0.1.0"; sha256="0ljp2c25zmyiv88mdari08z9845y9niyg90a8vlq75im5w825w8a"; depends=[CVXR dplyr ggplot2 MASS pcaMethods tidyr tidyverse]; }; CopernicusDEM = derive2 { name="CopernicusDEM"; version="1.0.2"; sha256="1jgvq1c86xgdyp17z1pmz01lfw5nsfc2x71pcn399vcgij5j1jrf"; depends=[doParallel foreach glue sf]; }; Copula_Markov = derive2 { name="Copula.Markov"; version="2.9"; sha256="18krq0q5i3j211g88sl153f1fa5crdcgclvl5lqawm7zykyzblh2"; depends=[]; }; Copula_Markov_survival = derive2 { name="Copula.Markov.survival"; version="1.0.0"; sha256="1sxg0ir39f4hj4m6imija0c88j513j6fflcp7xc0599iglwsrbvs"; depends=[survival]; }; @@ -980,14 +952,13 @@ in with self; { CopulaCenR = derive2 { name="CopulaCenR"; version="1.1.3"; sha256="03hd6cw1mymkdcjf211g2c4m049d61hva8n4nxsrp2lpzxq3yz3s"; depends=[caret copula corpcor flexsurv icenReg magrittr plotly pracma survival]; }; CopulaDTA = derive2 { name="CopulaDTA"; version="1.0.0"; sha256="1bx0jvlbhaxf4yhrfpd5l5zp7kmp6f17ckb1y9974sgc7s3hpqcd"; depends=[ggplot2 plyr reshape2 rstan]; }; CopulaREMADA = derive2 { name="CopulaREMADA"; version="1.5"; sha256="0ryqh6aikakpkrkqxy853qlyxzwhmhwgiz7ba2w872wysdpp82k3"; depends=[matlab mc2d statmod tensor]; }; - CopyDetect = derive2 { name="CopyDetect"; version="1.3"; sha256="1g3bwd805h62x93xvvn67acf9v6vn7s7ghxpvjhwcfdfj7fwzh6l"; depends=[mirt]; }; CorBin = derive2 { name="CorBin"; version="1.0.0"; sha256="0mjvhj9cw21xjg96fz5bcyfxgwdw367l1942a38by77ylypdfq3y"; depends=[]; }; CorDiff = derive2 { name="CorDiff"; version="1.0"; sha256="12rgfhygrdq1ign4ybr8g171wxic8zbp83n1xdsnqpj910k5jdr5"; depends=[mcc]; }; - CorMID = derive2 { name="CorMID"; version="0.1.4"; sha256="1jp3lhs9vyy5s4qfmv8sz5ai8ga9213nq870cb282cgjsryn8x0n"; depends=[plyr Rdisop]; }; + CorMID = derive2 { name="CorMID"; version="0.1.6"; sha256="0grwaaj06clg27lssa9zhlv2siyrraxjc4sy5nj6mffncs10d52c"; depends=[plyr Rdisop]; }; Corbi = derive2 { name="Corbi"; version="0.6-1"; sha256="0ig0rx4llkgqvg2sx6xmzhh9sjgy4qnw22xs84gxgqidi50f2a85"; depends=[CRF igraph MASS Matrix]; }; CornerstoneR = derive2 { name="CornerstoneR"; version="2.0.2"; sha256="04dvryhcyi7f6bmm4067cn5vmy7kdqi3bys7ln8nnsc0kkdjxhi5"; depends=[checkmate data_table minpack_lm ranger SpatialTools vcd]; }; CorrBin = derive2 { name="CorrBin"; version="1.6"; sha256="0iwad5qf7hqii02s5f85155c5s7v8ghnac4l6l3c45dshrpapp2m"; depends=[boot combinat dirmult geepack mvtnorm]; }; - CorrMixed = derive2 { name="CorrMixed"; version="1.0"; sha256="0rj987k8pzsw9n9a20ky23rwc3zyqsl0fcibpmry7p8pw2miaj0z"; depends=[nlme psych]; }; + CorrMixed = derive2 { name="CorrMixed"; version="1.1"; sha256="0y91j59x19syzar17zj22i445qgig8s273f7pbw99dpxx05bbifm"; depends=[nlme psych]; }; CorrToolBox = derive2 { name="CorrToolBox"; version="1.6.4"; sha256="1bff6vfyrgrij78l7n6dpk5g434iyr1h3qxdj7r0gvfzhw188h7p"; depends=[BinNonNor BinOrdNonNor GenOrd moments mvtnorm psych]; }; CorrectOverloadedPeaks = derive2 { name="CorrectOverloadedPeaks"; version="1.2.17"; sha256="1g7irjbhwnbhk74y3qxcjlrsn2yz8q6wn7ih16wq669nswryxhxk"; depends=[bitops digest XML]; }; CorrectedFDR = derive2 { name="CorrectedFDR"; version="1.1"; sha256="1p0gp7m7v6nly0kr4pkjwxaa941z80nfc8ji5w0y73i79d024c2s"; depends=[]; }; @@ -998,7 +969,6 @@ in with self; { CountsEPPM = derive2 { name="CountsEPPM"; version="3.0"; sha256="0iw7sfrb4yyaagwm1f4q9av5zvzia1mp2ns287ppsw3k248lz0kb"; depends=[expm Formula lmtest numDeriv]; }; CovCombR = derive2 { name="CovCombR"; version="1.0"; sha256="07yd0zbvc9db2jw6xigfhxnbkxwb3gxlmywadz7fs3rva2if2ffx"; depends=[CholWishart Matrix nlme]; }; CovSel = derive2 { name="CovSel"; version="1.2.1"; sha256="02fsiykbg96ynqw25vfyrams7fs39xjmfhvb23zjbqb7ql6d0xdk"; depends=[dr MASS np]; }; - CovSelHigh = derive2 { name="CovSelHigh"; version="1.1.1"; sha256="0dvvpkqml2k00gicpgp475z1rjspq3s37ys1mam29k54qlshhny6"; depends=[bartMachine bindata bnlearn doParallel doRNG foreach glmnet MASS Matching randomForest tmle xtable]; }; CovTools = derive2 { name="CovTools"; version="0.5.4"; sha256="1bkqg3kzy2ahjqldcf6x55wkrmb4s6y72y9cj0jwb1fph0a1p3sm"; depends=[doParallel expm foreach geigen Matrix mvtnorm pracma Rcpp RcppArmadillo Rdpack shapes SHT]; }; CovidMutations = derive2 { name="CovidMutations"; version="0.1.3"; sha256="03bl9frjfj8i7ydgi245113yzyg8rkgqxasicmqcjdd68zbz00kn"; depends=[cowplot dplyr ggplot2 ggpubr seqinr stringr VennDiagram]; }; CoxBcv = derive2 { name="CoxBcv"; version="0.0.1.0"; sha256="14lrvkv983hq5fvy1p7n8y435w6yfp1iq7g50l8qy4ppaaixgwq0"; depends=[pracma survival]; }; @@ -1009,7 +979,6 @@ in with self; { CpGFilter = derive2 { name="CpGFilter"; version="1.1"; sha256="0ccvk7lawmay0wqdyhs6ww7396dcfzazn72sq6zwyw7dl45k2j0i"; depends=[matrixStats]; }; CpGassoc = derive2 { name="CpGassoc"; version="2.60"; sha256="1zx18x8pxjl2ajnj7a7lb8383m75ysg17f4mzz0vkgl5mnf617ny"; depends=[nlme]; }; Cprob = derive2 { name="Cprob"; version="1.4.1"; sha256="1m4ys8xpj1jbn3lf8fym935y94dxipiimsf9zxwyw5sy71y7skgq"; depends=[geepack lattice lgtdl prodlim tpr]; }; - CreditRisk = derive2 { name="CreditRisk"; version="0.1.3"; sha256="09ks8xlsrbp3an1drcwmmd6df4fsfz61z21ma2p62a1pk0bnc86c"; depends=[fOptions]; }; Cronbach = derive2 { name="Cronbach"; version="0.1"; sha256="1gkapi7pgf1mwidhgdf3y5cm4bz5igzb7mdflz560aa67asp1qyf"; depends=[boot]; }; CropDetectR = derive2 { name="CropDetectR"; version="0.0.1"; sha256="14sabqld94if7f2m39bh6652cb62hcwx53k8q5k23anzzsn93qlj"; depends=[dplyr EBImage imager reshape2]; }; CropScapeR = derive2 { name="CropScapeR"; version="1.1.3"; sha256="1k09ish6a7wjsa9w5vcvsc8inrbzap0hhx4qjrf5wbniqnv3hgl8"; depends=[data_table dplyr httr magrittr raster RJSONIO sf]; }; @@ -1017,6 +986,7 @@ in with self; { CrossValidate = derive2 { name="CrossValidate"; version="2.3.4"; sha256="1q5wnw2llvlw3hbjg0zccipk3ns31m2339x1aj6m526zhvgl2wvx"; depends=[Modeler oompaBase]; }; Crossover = derive2 { name="Crossover"; version="0.1-20"; sha256="1mm8zc845v077rnhijammpq72dsm9smwiixr0iygcadb5vbkfpib"; depends=[CommonJavaJars crossdes digest ggplot2 JavaGD MASS Matrix multcomp Rcpp RcppArmadillo rJava xtable]; }; CruzPlot = derive2 { name="CruzPlot"; version="1.4.7"; sha256="0ywa0wqwcapnxjhd5hw9cnxss8rjj31lxn9j2g19c3mfxkqpqc29"; depends=[dplyr DT geosphere mapdata maps marmap shiny shinydashboard shinyjs stringr swfscDAS]; }; + CryptRndTest = derive2 { name="CryptRndTest"; version="1.2.7"; sha256="0skk0mgnkfknlbdidfh2jca1wa8rzgd29ypwpa8kdh83l9jhdi5g"; depends=[gmp kSamples LambertW Rmpfr sfsmisc tseries]; }; CrypticIBDcheck = derive2 { name="CrypticIBDcheck"; version="0.3-3"; sha256="1c7n020i9lxp0fam05k9v4az4rvx8fakhzi9fkma82smpl709x8q"; depends=[car chopsticks ellipse rJPSGCS]; }; CsChange = derive2 { name="CsChange"; version="0.1.6"; sha256="0ahgzir1rz5hh2jkgabp9vccg527vbvmkdyxf9lyz5yxkig3jv2s"; depends=[boot Hmisc rms survival]; }; Cubist = derive2 { name="Cubist"; version="0.4.0"; sha256="0y2mjqg8285vprm42z1dsqhs5k6g3703ysg3225a7qq08ga787rs"; depends=[lattice reshape2]; }; @@ -1038,14 +1008,14 @@ in with self; { DAISIE = derive2 { name="DAISIE"; version="3.0.1"; sha256="10b55m4ycb07l0mfjx58zfmckk627arj575p9via6kr7lp1c3j59"; depends=[DDD deSolve doParallel foreach magrittr Matrix pracma subplex tensor testit]; }; DAKS = derive2 { name="DAKS"; version="2.1-3"; sha256="0vmpwxvksnmyq40faimbgpj0y3zbk519986n38ipwdfzllcg0zs4"; depends=[relations sets]; }; DALEX = derive2 { name="DALEX"; version="2.4.0"; sha256="1s7r7k5ihdbj69r27vbcs3ghra9s4yqw7cyh2rkm2ry901zq3114"; depends=[ggplot2 iBreakDown ingredients]; }; - DALEXtra = derive2 { name="DALEXtra"; version="2.1.1"; sha256="1xqqisrqal0spzkbc1x5rj3xpycfqj4g87wc3nl2j76frj8mnmdy"; depends=[DALEX ggplot2 reticulate]; }; + DALEXtra = derive2 { name="DALEXtra"; version="2.2.0"; sha256="0fcnask0byfnlfm58d5syhv6vjpqlbkkc820ryr9kg8bgzxpgqm1"; depends=[DALEX ggplot2 reticulate]; }; DALY = derive2 { name="DALY"; version="1.5.0"; sha256="1v7ld01xcn5jiygl1c3xhd5h71ip90lks87fs9gmpnivp8jz5cr5"; depends=[]; }; DAMOCLES = derive2 { name="DAMOCLES"; version="2.3"; sha256="0pk9gq82qa18fl7zp74d47bgy8lhj9rkvfq23w8844nz9kn58s1f"; depends=[ape caper DDD deSolve expm Hmisc Matrix matrixStats picante]; }; DAMisc = derive2 { name="DAMisc"; version="1.7.2"; sha256="1mg40fqb0bj8jlw50dkkby67rj83g6pjhw9vbqvfxq30a1pq9inm"; depends=[AICcmodavg boot car clarkeTest coda dplyr DT effects ggplot2 haven janitor jtools lattice latticeExtra magrittr MASS nnet optiscale rlang srvyr survey tibble tidyr tidyselect xtable]; }; DAP = derive2 { name="DAP"; version="1.0"; sha256="0zzb05yxfaqp6qnr979q20rqy8sl5l825mxs0x9366qr7mz5k5ws"; depends=[MASS]; }; + DATAstudio = derive2 { name="DATAstudio"; version="1.1"; sha256="1gwm53pgab5qn0p46bxs0790n7bbfl7b66i84xsa6bb4zdw5jdzb"; depends=[data_table ggplot2 scales]; }; DArand = derive2 { name="DArand"; version="0.0.1.2"; sha256="1pwd5srrjy8mhs40k6g6x5j3vk9cr5hylk8sdyiiqalpq490nzqy"; depends=[]; }; DBEST = derive2 { name="DBEST"; version="1.8"; sha256="1a598g02hpfgv572gchllqkppynnsp4lx764jg0g66w3b66k0kdy"; depends=[zoo]; }; - DBGSA = derive2 { name="DBGSA"; version="1.2"; sha256="04zqh9y3nqcdzs5jn8aaq5idy9zl450ikvl788xs860wlg692qv2"; depends=[fdrtool]; }; DBI = derive2 { name="DBI"; version="1.1.2"; sha256="0n2gf5flmcrkad7p0pzsnsgwjl5006yi7lyz9lisqxhw8xykgv2n"; depends=[]; }; DBItest = derive2 { name="DBItest"; version="1.7.2"; sha256="0zx58nq6l21g0sbrmrnmckw0x20i2f6lv81cczh02yrv4r968cmh"; depends=[blob callr DBI desc hms lubridate palmerpenguins R6 rlang testthat vctrs withr]; }; DBR = derive2 { name="DBR"; version="1.2.3"; sha256="12prvvx1smii3r4m98yyr53vkkk70l2cswv5777g1mr7wrgfbvya"; depends=[MfUSampler]; }; @@ -1056,10 +1026,9 @@ in with self; { DCD = derive2 { name="DCD"; version="0.1.0"; sha256="0p6vk8fdvpcvb1bb5fwy3h1v8y3djlvcm5jl5lnx30ngqj6d7rcj"; depends=[data_table doParallel foreach ggplot2 igraph lattice lsa Matrix plyr qlcMatrix Rdpack ROCR WGCNA]; }; DCEM = derive2 { name="DCEM"; version="2.0.5"; sha256="04z0lya1dbkdzjbgn8g6p16969kc6s4zrk87wy0i42h2hx0yx1zv"; depends=[MASS matrixcalc mvtnorm Rcpp]; }; DCEmgmt = derive2 { name="DCEmgmt"; version="0.0.1"; sha256="1vv212baycn0xkk2caj1f00ps1512261h21akmyqjhij3q4lxikx"; depends=[mlogit survival]; }; - DCEtool = derive2 { name="DCEtool"; version="0.3.1"; sha256="05pmdd5ryv0jyqkqknjb33lvfcv4vqfqw46q231l5ixxcwapfvxr"; depends=[bslib commonmark DT htmltools idefix MASS mlogit readxl shiny shinycssloaders shinyglide shinyhelper shinyjs shinythemes stringr survival writexl]; }; + DCEtool = derive2 { name="DCEtool"; version="1.0.0"; sha256="0l6m0dpr83fi22sp8vwc7jxw598j91jhz55s51ihii0wfiwk26ym"; depends=[adjustedcranlogs bslib dfidx DT fastDummies ggplot2 htmltools idefix knitr magrittr matrixStats mlogit mvtnorm readxl remotes rlist rmarkdown shiny shinyBS shinycssloaders shinythemes shinyWidgets stringi survival tibble tidyr tidyverse writexl]; }; DCG = derive2 { name="DCG"; version="0.9.3"; sha256="08718x6v3g7kpfv0gpgm19cn3d3ynj7yagzs0jic1j5rwvn04pfb"; depends=[]; }; - DCGL = derive2 { name="DCGL"; version="2.1.2"; sha256="1dhkdvdglpsr0fzrfrrr6q76jhwxgrcjsiqn56s082y7v366xvs4"; depends=[igraph limma]; }; - DCL = derive2 { name="DCL"; version="0.1.0"; sha256="1ls3x3v0wmddfy7ii7509cglb28l1ix1zaicdc6mhwin0rpp2rx3"; depends=[lattice latticeExtra]; }; + DCL = derive2 { name="DCL"; version="0.1.2"; sha256="0r9zigbxaa9w8501mishydyp47rpzfrx717m0ysly6nkxfm6g6d6"; depends=[lattice latticeExtra]; }; DCLEAR = derive2 { name="DCLEAR"; version="1.0.8"; sha256="1riqsrzx9liq9fq9b4bfyfkixq879rzwa2yl202if8py42k1rnk5"; depends=[ape BiocGenerics BiocParallel dplyr igraph Matrix matrixStats phangorn purrr rBayesianOptimization Rcpp RcppArmadillo rlang stringr tidyr tidyverse]; }; DCODE = derive2 { name="DCODE"; version="1.0"; sha256="19dwms88q0ylxd92l3ivig8p8jjyhk8mhgz0l36m9pcq11gyjc0n"; depends=[seqinr]; }; DCPO = derive2 { name="DCPO"; version="0.5.3"; sha256="1h14xnii6kv6sc7pfxalif3bj0mifnxg46x4lwbixx9vzxxz96sq"; depends=[beepr BH dplyr forcats janitor purrr Rcpp RcppEigen rstan rstantools StanHeaders tibble tidyr]; }; @@ -1070,16 +1039,16 @@ in with self; { DClusterm = derive2 { name="DClusterm"; version="1.0-1"; sha256="04i9fyph2k3ffds0nv49371p8lw6dkzcf27pc98f99x0l6c8k5iq"; depends=[DCluster lme4 sp spacetime xts]; }; DDD = derive2 { name="DDD"; version="5.0"; sha256="13kqgj45afd0c5jkwi36j94v7l2bz60i3583z1jcvdxq913wwv5b"; depends=[ape BH deSolve expm Matrix phytools Rcpp SparseM subplex]; }; DDHFm = derive2 { name="DDHFm"; version="1.1.2"; sha256="0lgh6kcfas06p2yy7zy21r05k5521xbj5af3wwwssp5li1cia35g"; depends=[lokern wavethresh]; }; - DDIwR = derive2 { name="DDIwR"; version="0.9"; sha256="1axpilpy8xain7292ssfvr9h3s7djrdhwj8nv3pq272awjpnr78a"; depends=[admisc declared haven readr readxl writexl xml2]; }; + DDIwR = derive2 { name="DDIwR"; version="0.11"; sha256="0y2bd77dgfcnkkd2lwrjsx7i4d41i68akyq94gwn1rymmgy6vqjz"; depends=[admisc declared haven readxl writexl xml2]; }; + DDL = derive2 { name="DDL"; version="1.0.0"; sha256="1b6yghgk96fkfdxp4lhhdz4xc1lxlpbfy80kwl8wgkks0pmw64aa"; depends=[glmnet Matrix]; }; DDM = derive2 { name="DDM"; version="1.0-0"; sha256="19g06qk3lzasj294x9wfij729mlq6ryvjqkn3rgl5xp1w0gx9wi2"; depends=[]; }; DDPNA = derive2 { name="DDPNA"; version="0.3.0"; sha256="1mgk2jf7h9qnmy85dfymskwihdk0dw74ydrgrf2sfj6xpslnavi2"; depends=[ggalt ggplot2 Hmisc igraph MEGENA plyr scales VennDiagram]; }; DDRTree = derive2 { name="DDRTree"; version="0.1.5"; sha256="16s5fjw7kwlxhrkzdny62sx32fvmg3rxjc3wrh6krd31jh1fqlfk"; depends=[BH irlba Rcpp RcppEigen]; }; DDoutlier = derive2 { name="DDoutlier"; version="0.1.0"; sha256="1az5zq0l3kj959572mlpc4zl73f16iag0yrs217fa9m8xpd3c2sd"; depends=[dbscan pracma proxy]; }; DECIDE = derive2 { name="DECIDE"; version="1.2"; sha256="18kn2pm9r0ims2k1jfsfzh258wwxz0xg86rsbwgq6szh0azlq3qy"; depends=[]; }; - DEEPR = derive2 { name="DEEPR"; version="0.1"; sha256="0q8970q3gpjxwxdf2bkhpnqrxpm00w27b20a9sn9vv314rn1n7s8"; depends=[dirmult]; }; DEEVD = derive2 { name="DEEVD"; version="1.2.3"; sha256="1wa3h0z5sk8zrwblzb8w7hgj9yqw56vqi3vsnpva53qynf42r2n7"; depends=[evd]; }; DELTD = derive2 { name="DELTD"; version="2.6.7"; sha256="1cghz224pmh06yk00jx956nlkk45p2ri81v1jjhx27xjagp4jzcs"; depends=[]; }; - DEM = derive2 { name="DEM"; version="0.0.0.1"; sha256="1b90bwk30kjp9kkyj9m4fcj5fxbsarmnqk469f5akp1j9kaa3m88"; depends=[mvtnorm]; }; + DEM = derive2 { name="DEM"; version="0.0.0.2"; sha256="17ibq5cavzkl2vfrmrkz77m28l4xpj97skad5pfvk1nhzyrg2k1l"; depends=[mvtnorm]; }; DEMOVA = derive2 { name="DEMOVA"; version="1.0"; sha256="09dqhhhihphhdnplmhdq4q5zwc0qvqhirdrxa9x6fr43vwa5zfp4"; depends=[leaps]; }; DEPONS2R = derive2 { name="DEPONS2R"; version="1.0.3"; sha256="1h7bia4l8myjnwhjp576v6wkr0p63hcgfdmqrxhiam9xwl7kp4ar"; depends=[jsonlite raster rgdal rgeos sp xml2]; }; DES = derive2 { name="DES"; version="1.0.0"; sha256="16p38i8ykwc8gjw6c9dhdwjjpa1b17n9wqhz3rhkbzjh978pky31"; depends=[]; }; @@ -1090,8 +1059,8 @@ in with self; { DFA_CANCOR = derive2 { name="DFA.CANCOR"; version="0.2.3"; sha256="0qxdvxsx13b6i9qd245hsrwbg5kg4lh45kkvhn62404sx20jx7jd"; depends=[BayesFactor MVN]; }; DFIT = derive2 { name="DFIT"; version="1.1"; sha256="1220ax93b9xwmq1crgl1fnf63gk72jqbra5b5q25wn6ynv1kilkx"; depends=[ggplot2 mirt msm mvtnorm simex]; }; DGCA = derive2 { name="DGCA"; version="1.0.2"; sha256="0k2a24ycagyxdx54dh9w8km25xhmmmhyyl26g76z4g5gqvcw092k"; depends=[matrixStats WGCNA]; }; - DGEobj = derive2 { name="DGEobj"; version="1.1.0"; sha256="154p31rgy56nv0awabd32n76axwsk6i99gd5wss5a2ilza5g4iv5"; depends=[assertthat magrittr stringr]; }; - DGEobj_utils = derive2 { name="DGEobj.utils"; version="1.0.4"; sha256="0mad5cph7bszb7xykgsd9gk5d2zb0kwvb4yjrh84zfdnxgw8799w"; depends=[assertthat DGEobj dplyr edgeR limma qvalue stringr sva]; }; + DGEobj = derive2 { name="DGEobj"; version="1.1.1"; sha256="1j659gzaphljvdpmrmn32srrnsr77wf8xv11ikd83wnxsj0wbdap"; depends=[assertthat magrittr stringr]; }; + DGEobj_utils = derive2 { name="DGEobj.utils"; version="1.0.5"; sha256="19zz0cwjp1ww10kkqja0fyjl4lg5s268qqrvipjvdlmk8fdgy4la"; depends=[assertthat DGEobj dplyr edgeR limma qvalue stringr sva]; }; DGLMExtPois = derive2 { name="DGLMExtPois"; version="0.2.0"; sha256="0d0c2pv4srb20ly5i43zy3h1y9yng2lz5djpprhbqxim80lv05wc"; depends=[COMPoissonReg nloptr]; }; DGM = derive2 { name="DGM"; version="1.7.4"; sha256="1f59spd4bwx4d1gbjaizjxccaslw1fvf8pxa9nrxi07j6kq9mg0h"; depends=[coin data_table ggplot2 Rcpp RcppArmadillo reshape2]; }; DHARMa = derive2 { name="DHARMa"; version="0.4.5"; sha256="1gw8kpa0lrcdifpqgfwxhbmwqc56xzw0bznq23qdzgmsk84l3k8g"; depends=[ape gap lme4 lmtest Matrix qgam]; }; @@ -1105,7 +1074,7 @@ in with self; { DIFshiny = derive2 { name="DIFshiny"; version="0.1.0"; sha256="0lb98dj2kidfv8zqs1rdkj7b6gf6i4d2s904bwsbyg7w03jxm86f"; depends=[difR readxl shiny shinydashboard]; }; DIFtree = derive2 { name="DIFtree"; version="3.1.6"; sha256="1ps3nb1a5dgxs187bcjsys4fpi0z4z6d84qlxg8rf1rvcfgg21r5"; depends=[gridBase penalized plotrix VGAM]; }; DIGSS = derive2 { name="DIGSS"; version="1.0.2"; sha256="1bbwkq40gdan1zwq3cwn96k0k045x67l11rhm3q4dppw50736fpk"; depends=[ggplot2 viridis]; }; - DIME = derive2 { name="DIME"; version="1.2"; sha256="11l6mk6i3kqphrnq4iwk4b0ridbbpg2pr4pyqaqbsb06ng899xw0"; depends=[]; }; + DIME = derive2 { name="DIME"; version="1.3.0"; sha256="1kbs5s3pgjlqiikcd54v9ym9yw40q6x1bgl7k0570l7i3mvcfvsj"; depends=[]; }; DIMORA = derive2 { name="DIMORA"; version="0.2.0"; sha256="1ig2h2v199r5ryia35fx2540px7n2qshpma73599l82dr7k9hb33"; depends=[deSolve forecast minpack_lm numDeriv reshape2]; }; DIRECT = derive2 { name="DIRECT"; version="1.0.1"; sha256="00z4xlc9kxn19lw2b8xq6krsf5v3wfbr1ghl5ah5shr9dnv84lc1"; depends=[]; }; DISTRIB = derive2 { name="DISTRIB"; version="1.0"; sha256="0whwmmdx2k2vrjjkz4ww9v7z9ad3835819pby91119lyic27w727"; depends=[]; }; @@ -1117,7 +1086,7 @@ in with self; { DJL = derive2 { name="DJL"; version="3.8"; sha256="0ry8zyr86qdb80fd9x2inrpdasfj13k2andm0wapd1k250018js8"; depends=[car lpSolveAPI]; }; DLASSO = derive2 { name="DLASSO"; version="2.0.2"; sha256="0xdygf6h89d9z4kqb46iqfxgdzq9dmkrxf9ypw78l4d8n9xx2gaa"; depends=[MASS]; }; DLL = derive2 { name="DLL"; version="1.0.0"; sha256="00xj6r1i4qhv0lq9ky88pw26nkc3ywhl23j9rsh2z5jn4dqpwpcg"; depends=[glmnet locpol MASS SAM]; }; - DLMtool = derive2 { name="DLMtool"; version="6.0.3"; sha256="00gh4di7ngn56v5hy7l5ybj6zg71fxaqyp1chmz22arb7rvj4q08"; depends=[dplyr ggplot2 MSEtool Rcpp]; }; + DLMtool = derive2 { name="DLMtool"; version="6.0.4"; sha256="0mxf0s1br1wrz35wgpbwr9fd6qjlv4c0d887yxq0v5fqwgispsqh"; depends=[dplyr ggplot2 MSEtool Rcpp RcppEigen TMB]; }; DMCfun = derive2 { name="DMCfun"; version="2.0.2"; sha256="1phzi3an03akf04q1j6s1dmqmfzg1r52ga7685wimcbxy4cbq323"; depends=[BH DEoptim dplyr pbapply Rcpp shiny tidyr]; }; DMLLZU = derive2 { name="DMLLZU"; version="0.1.1"; sha256="0ck87abcd5gkq69q1g5g0yshfhx94m3vgayvxgzgnkidn9mivx22"; depends=[caret gbm ISLR lmtest nnet randomForest rlang sandwich]; }; DMMF = derive2 { name="DMMF"; version="0.5.1.2"; sha256="0p82cfp0561j4ki20rznx46z7vqdxh128a0m0zj8d2wp3csn1aag"; depends=[raster rgdal sp]; }; @@ -1130,7 +1099,7 @@ in with self; { DNAtools = derive2 { name="DNAtools"; version="0.2-4"; sha256="1xcpp5jw5xq6a6ccq8jsd4d7ailv3iv8k7b1bbz531vhy9im2dzs"; depends=[multicool Rcpp RcppParallel RcppProgress Rsolnp]; }; DNH4 = derive2 { name="DNH4"; version="0.1.12"; sha256="0g3ibacsbsk34b6411j3n3q9dxqq1iqdnisppmmq7s2bp94ab771"; depends=[httr rvest tibble tidyr]; }; DNLC = derive2 { name="DNLC"; version="1.0.0"; sha256="05410xgpfjsydjmnzry454qcjpws9vhh252q2xq7l0scdj87ly00"; depends=[caTools fdrtool GOstats igraph locfdr mvtnorm spdep]; }; - DNMF = derive2 { name="DNMF"; version="1.3"; sha256="09yp6x6vd44ahklcag96fpjgyphyn45rkqkbwr1n36a2d8vxk9nc"; depends=[doParallel foreach gplots Matrix]; }; + DNMF = derive2 { name="DNMF"; version="1.4.2"; sha256="10zzbi0jywlnq4hxqb0dh7xrn8gj75asd4yc1mcl2dbjpi68sn56"; depends=[doParallel foreach gplots Matrix]; }; DOBAD = derive2 { name="DOBAD"; version="1.0.6"; sha256="0ifrrfm4yp1416z58qgnak042rgj1xvqby2vvzgrv19z6b3250p3"; depends=[lattice Matrix numDeriv]; }; DOEM = derive2 { name="DOEM"; version="0.0.0.1"; sha256="0xfc4wzbh7gp4c8y7141kyycjxy5avjc8wwxzqyvf70l2if7x4id"; depends=[]; }; DOPE = derive2 { name="DOPE"; version="2.1.0"; sha256="1ccg0sgxvv4c9522f2wynp9j37cnlf4gdaymxgi1jxdlikm3ls5r"; depends=[dplyr magrittr stringr tibble tidytext]; }; @@ -1144,11 +1113,11 @@ in with self; { DPP = derive2 { name="DPP"; version="0.1.2"; sha256="1qalcm4gwh03qpy07d0p323ccq8xmk04v6z30g7wg6ic613bqg7m"; depends=[coda Rcpp]; }; DPQ = derive2 { name="DPQ"; version="0.5-1"; sha256="10szzygpmjqmqdzpcz7zrh08bkphpzcrll99q2crn41wkqaybq96"; depends=[sfsmisc]; }; DPQmpfr = derive2 { name="DPQmpfr"; version="0.3-1"; sha256="0f3l6dhiqnlix5vdz65pnxic43hcd4xiz64sh3cp8xs8cbmlnqcw"; depends=[DPQ gmp Rmpfr]; }; - DPWeibull = derive2 { name="DPWeibull"; version="1.8"; sha256="05sasi42cakq0k3syvn2hnvb0sl2dflw6x98riwgrjvsmnw6bh2g"; depends=[binaryLogic prodlim Rcpp RcppArmadillo survival truncdist]; }; + DPpack = derive2 { name="DPpack"; version="0.0.1"; sha256="0p3l7qa1b50gl5kmacqbbhicbc11p9xhyag86zjicpdadn953skb"; depends=[dplyr e1071 ggplot2 MASS nloptr R6 Rdpack rmutil]; }; DPtree = derive2 { name="DPtree"; version="1.0.1"; sha256="0d7zf695lwkx4gv50f08cbi3p3mjjay0qgrbmvybf9m15i4zmyd7"; depends=[MASS MCMCpack plyr Rdpack]; }; DQAgui = derive2 { name="DQAgui"; version="0.1.9"; sha256="1cq002anhdk6hqnlskngyr14jbaaxvwzql4ry30g4j0d6x6dy5s6"; depends=[data_table daterangepicker DIZtools DIZutils DQAstats DT jsonlite knitr lubridate magrittr parsedate shiny shinyalert shinydashboard shinyFiles shinyjs shinyWidgets waiter]; }; DQAstats = derive2 { name="DQAstats"; version="0.2.6"; sha256="1z3mmrd5vdd9z973y8d77r610b1ns8viwmncckcl813rd2fz2dki"; depends=[data_table DIZtools DIZutils future future_apply jsonlite kableExtra knitr magrittr parsedate rmarkdown tinytex]; }; - DR_SC = derive2 { name="DR.SC"; version="2.7"; sha256="1ap30phavskiy9vn7jzh8iajfr1ds3gwpcdh59vawf8xv1w8lwpi"; depends=[CompQuadForm cowplot ggplot2 GiRaF MASS Matrix mclust purrr RColorBrewer Rcpp RcppArmadillo S4Vectors Seurat spatstat_geom]; }; + DR_SC = derive2 { name="DR.SC"; version="2.8"; sha256="0cnc5ar0k2gya71brsj2fxd06p94dgkc4i78czbjpf9mkqjkfjf5"; depends=[CompQuadForm cowplot ggplot2 GiRaF MASS Matrix mclust purrr RColorBrewer Rcpp RcppArmadillo S4Vectors Seurat spatstat_geom]; }; DRAYL = derive2 { name="DRAYL"; version="1.0"; sha256="0cf5pyx6nwh8srdylpnmymv3dr67fm6qqpwd1hvj1wmyfc8fznpp"; depends=[cubature pracma RConics rmutil]; }; DRDID = derive2 { name="DRDID"; version="1.0.3"; sha256="1xlz4vc43myxximzcf87bk52pd5rplcbi5655m18xk7jx2l95ksb"; depends=[BMisc trust]; }; DRDRtest = derive2 { name="DRDRtest"; version="0.1"; sha256="1vrvwr441w526a80s0r2fwqlllvn05ir8v2152jz2wxrwhnpq1s0"; depends=[KernSmooth SuperLearner]; }; @@ -1172,21 +1141,20 @@ in with self; { DSjobtracker = derive2 { name="DSjobtracker"; version="0.1.1"; sha256="1vi07n7ygsdjj4830rnx7kvacmnizl146c6bfw2fnby47apg38f9"; depends=[]; }; DSpoty = derive2 { name="DSpoty"; version="0.1.0"; sha256="18z8gk3zj7k2szxg9579qy5klrqjw6zsk5x9jmwrv4qhb98fyji6"; depends=[dplyr httr purrr stringr]; }; DSsim = derive2 { name="DSsim"; version="1.1.5"; sha256="0dr8dc91m7s5c198k9cb26a09f14wb8ihr46c0mr9cg33l2wf3nv"; depends=[fields mgcv mrds rgeos shapefiles sp splancs]; }; - DSviaDRM = derive2 { name="DSviaDRM"; version="1.0"; sha256="1hj2pgnldrpgapwwz1kf4k6mvyzwdvb1i6czd7sbimsx5hafwps8"; depends=[igraph ppcor]; }; - DT = derive2 { name="DT"; version="0.22"; sha256="16ah0h60ygvj49cs6cxxhdxx68cs6v6m35w5r1j5h8nxz171q61z"; depends=[crosstalk htmltools htmlwidgets jquerylib jsonlite magrittr promises]; }; + DT = derive2 { name="DT"; version="0.23"; sha256="0w6wgiwa3zgldp175a3q7zfw853xqc7mfj34n6hja48ln7yf42in"; depends=[crosstalk htmltools htmlwidgets jquerylib jsonlite magrittr promises]; }; DTAT = derive2 { name="DTAT"; version="0.3-4"; sha256="1ddmih8cxbgc1p4m0sm8gdbnf0d3ka8z7014zd4aykz75j3pr002"; depends=[data_table dplyr Hmisc jsonlite km_ci pomp r2d3 shiny survival]; }; DTAXG = derive2 { name="DTAXG"; version="0.1.0"; sha256="1jxa0ix0z35i0xdnjl698j8iqjmp6nz8ckah9bap5ay9rkq0xd7f"; depends=[]; }; DTAplots = derive2 { name="DTAplots"; version="1.0.2.5"; sha256="1jwfh8j8ahaj2z19g2f70r652j77q4f0b7j91mggsb0dgk449342"; depends=[]; }; DTComPair = derive2 { name="DTComPair"; version="1.0.3"; sha256="1af2293ckkpz0gjcibgzzvz37852cav4wa4girpc87yn3p4ajlri"; depends=[gee PropCIs]; }; DTDA = derive2 { name="DTDA"; version="3.0.1"; sha256="1x65ahrci7n8v5d6nfz2p3p1x0zjam3a2mvw9m1rpdmfgbalpim7"; depends=[doParallel foreach]; }; DTDA_cif = derive2 { name="DTDA.cif"; version="1.0.2"; sha256="12vkhqxdhir06s35kr76dwns9m02wyicz3mv4r56fqglsfyw77xr"; depends=[doParallel foreach Rcpp]; }; - DTDA_ni = derive2 { name="DTDA.ni"; version="1.0"; sha256="0c45cz4y629bc0jnf3m35ywqkrnjcdqbssbb6m10j8b4gszdi35i"; depends=[]; }; + DTDA_ni = derive2 { name="DTDA.ni"; version="1.0.1"; sha256="0lv8k37n271zcmp5mxxc6z03bx283lnc4iz3zz1k2mnfzq2wrahz"; depends=[]; }; DTK = derive2 { name="DTK"; version="3.5"; sha256="0nxcvx25by2nfi47samzpfrd65qpgvcgd5hnq9psx83gv502g55l"; depends=[]; }; - DTMCPack = derive2 { name="DTMCPack"; version="0.1-2"; sha256="0bibas5cf06qq834x9q2l2fyh6q9wrg07k8cn6almcyirzax6811"; depends=[]; }; + DTMCPack = derive2 { name="DTMCPack"; version="0.1-3"; sha256="1a07hpl1fagigxkd3yjjkwjpmjwbfyg9a7m8fcj1602xl525h2ki"; depends=[]; }; DTR = derive2 { name="DTR"; version="1.7"; sha256="1lzvk9ar6xf3n2vvy8vb9mvrbx3nafzzhvz5g7vf79jd71yz54jd"; depends=[aod ggplot2 survival]; }; DTRlearn2 = derive2 { name="DTRlearn2"; version="1.1"; sha256="0l756zb1wkpa1z5zjkc8jndmh2630gckxxfqslabzjmgsjf7fjgm"; depends=[foreach glmnet kernlab MASS Matrix]; }; DTRreg = derive2 { name="DTRreg"; version="1.7"; sha256="0fr2c8fg1acs2kk0r67zml5fp71mvxw116ixqf7yq34n9ljd5yph"; depends=[dplyr MASS]; }; - DTSg = derive2 { name="DTSg"; version="0.8.1"; sha256="19znfcwx9q97xjp52j7avq2qknlv9vd61nzmkya7j2l6q6rg0wrg"; depends=[checkmate data_table R6]; }; + DTSg = derive2 { name="DTSg"; version="1.0.0"; sha256="0rgkdhrx2grixgrfmkvjxj2haprnp8xk6k0ggyzx2xipp6p080g5"; depends=[checkmate data_table R6]; }; DTWBI = derive2 { name="DTWBI"; version="1.1"; sha256="06lp4yc5nhacrgic78l014g2w1ibwgs8dp8zrahk5aripaczl25y"; depends=[dtw e1071 entropy lsa rlist]; }; DTWUMI = derive2 { name="DTWUMI"; version="1.0"; sha256="0pybgbfs2yp2ljbs0kra5z70x3llkiwdngp6cadgs3j9rar4vq4q"; depends=[dtw DTWBI e1071 entropy lsa rlist]; }; DTwrappers = derive2 { name="DTwrappers"; version="0.0.2"; sha256="028n1211h9gmv050xfiw347x59gykb6ndvd371fdf53bbkqirqa4"; depends=[data_table]; }; @@ -1199,9 +1167,10 @@ in with self; { DYM = derive2 { name="DYM"; version="0.2"; sha256="1rk0xs224xi68f0mrygny2rklggl4grk866q7y9xck38bwy7aw94"; depends=[]; }; DamiaNN = derive2 { name="DamiaNN"; version="1.0.0"; sha256="09viy1lilz0b29s3myky03981bfnhxjxxgfhdah33cn5x682rbp4"; depends=[caret testthat]; }; DandEFA = derive2 { name="DandEFA"; version="1.6"; sha256="1ir1z76c8742vqdlwv35l4rhr0x7lhghz24g35zn7b30671lypf8"; depends=[gplots polycor]; }; + DanielBiostatistics10th = derive2 { name="DanielBiostatistics10th"; version="0.1.2"; sha256="1bn6v7nfmybwqdxikddvji748bak0bciass64zpngs7mk2hz1cii"; depends=[e1071 pracma]; }; Dark = derive2 { name="Dark"; version="0.9.8"; sha256="1f01aq4g50f07005c8k91cfy9hvl3fmb4yl2924d7512m3884xlv"; depends=[]; }; DarkDiv = derive2 { name="DarkDiv"; version="0.3.0"; sha256="0cjf5rpn4myd21rh04bk2gjk65rjx77mn8mxy4ym704fiycrsj87"; depends=[vegan]; }; - Dasst = derive2 { name="Dasst"; version="0.3.3"; sha256="0nrcvcfzr2y1jc984rpi3fmggns65sphc6nqr9l91h5qvpdcw7cl"; depends=[]; }; + Dasst = derive2 { name="Dasst"; version="0.3.4"; sha256="1q18wss5bla3hvhnvmwxpd8lbs6fpdkqf5bfiqva050hsdfq1fk7"; depends=[]; }; DatAssim = derive2 { name="DatAssim"; version="1.0"; sha256="120gazyyxda9faydv2lyqgvflhqi2fhih1szq0sy5v1gh4xb0hhy"; depends=[Rcpp RcppArmadillo]; }; DataClean = derive2 { name="DataClean"; version="1.0"; sha256="0wkafjyp6c2mx7g1bpz2pbxyl5nm2wba2hly8miizv0fdc762za5"; depends=[xlsx XML]; }; DataCombine = derive2 { name="DataCombine"; version="0.2.21"; sha256="0iwb4726bk0cjhay694dp43b1553yyk9lpxbncs85kz229b26arm"; depends=[data_table dplyr]; }; @@ -1234,18 +1203,18 @@ in with self; { Delaporte = derive2 { name="Delaporte"; version="8.0.2"; sha256="10xsmms2jfw7x4hmgpd35dv4n4azpjzmfid6585kg6qfh2zg23g5"; depends=[]; }; DelayedEffect_Design = derive2 { name="DelayedEffect.Design"; version="0.0.4"; sha256="0n1dw9bqisfarg7him49mzqn60gcfr660d5x9k6b37r12dnmy48v"; depends=[msm survival]; }; Delta = derive2 { name="Delta"; version="0.2.0.3"; sha256="0bi9qca4ky481zycp8r7ihvqfjkpvi7hb9wrjsw9avawqa6ck9bv"; depends=[]; }; - Demerelate = derive2 { name="Demerelate"; version="0.9-3"; sha256="1bsf09di6nh0hznqx829jnbn3092rya03hnc82cns6rm8d3bn0a9"; depends=[fts mlogit sfsmisc vegan]; }; DemoDecomp = derive2 { name="DemoDecomp"; version="1.0.1"; sha256="0m24ld8s3ph8qcbkqma5y5k5nv0d0vgb7wz8q20gxnfbj2kbcvjv"; depends=[Rdpack]; }; DemografixeR = derive2 { name="DemografixeR"; version="0.1.1"; sha256="16qd1wbzizvg86bqkk8fvb53g6h30l5v99cjxpnr43qf0r4drz3j"; depends=[httr jsonlite magrittr]; }; - DendSer = derive2 { name="DendSer"; version="1.0.1"; sha256="0id6pqx54zjg5bcc7qbxiigx3wyic771xn9n0hbm7yhybz6p3gz9"; depends=[gclus seriation]; }; + DemographicTable = derive2 { name="DemographicTable"; version="0.1.1"; sha256="1pziv2d3yrf51hdmyj1xwd28brfycb2p787yq0mx0f6wmld6y78v"; depends=[e1071 flextable]; }; + DendSer = derive2 { name="DendSer"; version="1.0.2"; sha256="1naz8sx5ksb3gqhgfsgdsf5377c96za829m7lmbpr7zlzlxg5jyf"; depends=[gclus seriation]; }; DendroSync = derive2 { name="DendroSync"; version="0.1.3"; sha256="1q3bn4aqr4gkazx8cpwbwx29paxg8lr6r2fn8h7jjpzpglj51d0m"; depends=[ggplot2 gridExtra nlme]; }; DensParcorr = derive2 { name="DensParcorr"; version="1.1"; sha256="1ifkg7cpimf27yhr60rks77r16kmhwa5h10wv7b64sbfncnyzfmj"; depends=[clime gplots]; }; Density_T_HoldOut = derive2 { name="Density.T.HoldOut"; version="2.00"; sha256="0kh5nns1kqyiqqfsgvxhx774i2mf4gcim8fp5jjyq577x4679r31"; depends=[histogram]; }; DepLogo = derive2 { name="DepLogo"; version="1.2"; sha256="13y3akmrj5x1mn1sgha1jryzswg4kqxwswbm3m5z92mcm2zw4r9l"; depends=[]; }; DepthProc = derive2 { name="DepthProc"; version="2.1.5"; sha256="0i7fks5hglf3xj8cj3sghjf0xcldhiqwf0jlpyk2a3mj9gaszc76"; depends=[colorspace geometry ggplot2 lattice MASS np Rcpp RcppArmadillo rrcov sm zoo]; }; Deriv = derive2 { name="Deriv"; version="4.1.3"; sha256="130g3mv0z9sqs6y23a0a94512iiw05yr6fp378vhdxxbignzbnyv"; depends=[]; }; - DescTools = derive2 { name="DescTools"; version="0.99.44"; sha256="04wp3sp6sahgq167465y38y13h1ia5a4zqazysacpjxd1if0578j"; depends=[BH boot data_table Exact expm gld MASS mvtnorm Rcpp rstudioapi]; }; - DescToolsAddIns = derive2 { name="DescToolsAddIns"; version="1.9"; sha256="12zwhy05wkwxldjyjxqcfsww73pxyni17c5g3b0slrxk6ag13wl7"; depends=[DescTools foreign manipulate rstudioapi writexl]; }; + DescTools = derive2 { name="DescTools"; version="0.99.45"; sha256="01gbmikpzjmymvb7p76k7wqvfvwznl6v0qa78jy7bi6fzmbp1zld"; depends=[BH boot data_table Exact expm gld httr MASS mvtnorm Rcpp readxl rstudioapi]; }; + DescToolsAddIns = derive2 { name="DescToolsAddIns"; version="1.10"; sha256="0wgcfrxf2vygr7rylkbfzlgldg6llg4k4bzwrq8c73miwac158js"; depends=[DescTools foreign manipulate rstudioapi writexl]; }; DescrTab2 = derive2 { name="DescrTab2"; version="2.1.9"; sha256="0742xawfawc16vm3xhrmpjgazzfgdgzfhhadrcgmch019z1ls9cr"; depends=[cli DescTools dplyr exact2x2 flextable forcats haven Hmisc kableExtra knitr magrittr nlme officer rlang rmarkdown scales stringr tibble tidyselect]; }; DescribeDisplay = derive2 { name="DescribeDisplay"; version="0.2.7"; sha256="0241mbz0y3ala7fsb4fwjd0xigsk0wq77hfrjyvnnp97rfjfzmcv"; depends=[GGally ggplot2 plyr reshape2 scales]; }; DescriptiveStats_OBeu = derive2 { name="DescriptiveStats.OBeu"; version="1.3.2"; sha256="0f2inlfkwl2q9ll5lh0ynpsbf6zci149s5nj0s0x0g98z72z8mly"; depends=[dplyr jsonlite magrittr RCurl reshape]; }; @@ -1274,14 +1243,14 @@ in with self; { Dict = derive2 { name="Dict"; version="0.1.0"; sha256="1v8yp03gajg9i82qyfww14jx93l4jbfq8mh6jqyf6calgrsj06jc"; depends=[dplyr magrittr purrr R6 rlang]; }; DidacticBoost = derive2 { name="DidacticBoost"; version="0.1.1"; sha256="0z1h61n6nfjvb64fgkzi1sq7ag747crhh593hxkx0cpza29778rz"; depends=[rpart]; }; Diderot = derive2 { name="Diderot"; version="0.13"; sha256="04d1drxn99r0fqq3zym7yyip9c8rfqhghq20q4zyb42l3hfgv9ai"; depends=[data_table doParallel foreach igraph RCurl splitstackshape stringi]; }; - DiffCorr = derive2 { name="DiffCorr"; version="0.4.1"; sha256="1kxp9dbiww086rmvmjvfhbk7jl36dkj88qwii6zg57llf7l5l4hm"; depends=[fdrtool igraph multtest pcaMethods]; }; + DiffCorr = derive2 { name="DiffCorr"; version="0.4.2"; sha256="0q7slvyqajbr1pa4k3dc7jfn6qi6i2fnvh7hl49qi3a60yr55mir"; depends=[fdrtool igraph multtest pcaMethods]; }; DiffNet = derive2 { name="DiffNet"; version="1.0-0"; sha256="04dvf0qxnc6jizwfjxw731j7d2fxyapk06rmqvga6h3p075q0mqk"; depends=[data_table doParallel foreach gplots Hmisc igraph lsa Matrix qlcMatrix Rcpp RcppEigen]; }; DiffXTables = derive2 { name="DiffXTables"; version="0.1.3"; sha256="0a0q1fz80jlcrk4rw70yjb8djxgsm5axih45vi4dqpg6n8xlrzw2"; depends=[pander Rdpack]; }; DiffusionRgqd = derive2 { name="DiffusionRgqd"; version="0.1.3"; sha256="1gf5jpvimfrc9ccva0jk85rl4zfkbijm2305ky1rxcgm4kgw4lax"; depends=[colorspace Rcpp RcppArmadillo rgl]; }; DiffusionRimp = derive2 { name="DiffusionRimp"; version="0.1.2"; sha256="1h7145ldlgwrrwj4l1wxdp2rbg2pm4v3pngiq0saz0xi3vpcxwl6"; depends=[colorspace Rcpp RcppArmadillo rgl]; }; DiffusionRjgqd = derive2 { name="DiffusionRjgqd"; version="0.1.1"; sha256="1yb1jaq324qm2x8cl3bs2dflnsx8yfygpw2m3kk5hzaai9gfkqjf"; depends=[colorspace Rcpp RcppArmadillo rgl]; }; DirStats = derive2 { name="DirStats"; version="0.1.7"; sha256="0xc8cns8l83y1k2ad10nxm4290xv8wlrhcx0sj7mpklzpizi9zin"; depends=[movMF rotasym]; }; - Dire = derive2 { name="Dire"; version="1.0.3"; sha256="0g02ak7ki103a3jw3pj3c6rmggcjv8dk0zk4mwann6xbbviwz2ls"; depends=[foreach haven iterators Matrix minqa Rcpp]; }; + Dire = derive2 { name="Dire"; version="2.0.1"; sha256="1c56h09m4f11kka04ajsjbx8yi7rmj1cdl1h8dj229vwqhqvbyv5"; depends=[foreach haven iterators MASS Matrix Rcpp]; }; DirectEffects = derive2 { name="DirectEffects"; version="0.2.1"; sha256="0cjqp4gam1psd11d6h99pi3ramnaybp6bij86wbgqji2icqlvghg"; depends=[Formula glue sandwich]; }; DirectStandardisation = derive2 { name="DirectStandardisation"; version="1.3"; sha256="1qlfvzlig3a2v78fiq6sbbpxklmjczikxdw57m6mqngzrl9vdl2g"; depends=[]; }; DirectedClustering = derive2 { name="DirectedClustering"; version="0.1.1"; sha256="1shdqz0c5bbgknvfqr3ais26cb5mpywnah3d3584w97sy8v7gxm2"; depends=[igraph]; }; @@ -1310,14 +1279,13 @@ in with self; { DiversityOccupancy = derive2 { name="DiversityOccupancy"; version="1.0.6"; sha256="16x3fpchgd12mccvr1k11vjka97sy5vjvjcyd5y3pskgnpycc2sv"; depends=[dplyr ggplot2 glmulti MuMIn qpcR raster unmarked vegan]; }; DnE = derive2 { name="DnE"; version="2.1.0"; sha256="02cbfb3m9xf24wkgqc06k3k0rx7qlqh4ma43khg6fpvif6yyahrn"; depends=[]; }; DoE_MIParray = derive2 { name="DoE.MIParray"; version="1.0"; sha256="09czqhd07hjx35w2a48sgpn9j5y6k1sy92gwhsbbik9s99n7q9gy"; depends=[combinat DoE_base]; }; - DoE_base = derive2 { name="DoE.base"; version="1.2"; sha256="06c90a329f5gjzhi3qdcyyp1z9n9lplkis0fld5r7dw07qknby32"; depends=[combinat conf_design lattice MASS numbers partitions vcd]; }; + DoE_base = derive2 { name="DoE.base"; version="1.2-1"; sha256="020gzszh65bbfhv58ry2jxmdn7cv96432f2fjpy6xz6gh6927i99"; depends=[combinat conf_design lattice MASS numbers partitions vcd]; }; DoE_multi_response = derive2 { name="DoE.multi.response"; version="0.1.0"; sha256="1289jlp10999kvyg5adw3dyc2mhh20i6biyqjbxd6g80a8dajknx"; depends=[DoE_wrapper]; }; DoE_wrapper = derive2 { name="DoE.wrapper"; version="0.11"; sha256="08bgfaiivqqnkhjb18flk1cpa33rh70i6g8v25x1ma3ffxqrwh96"; depends=[AlgDesign DiceDesign DoE_base FrF2 lhs rsm]; }; DoEstRare = derive2 { name="DoEstRare"; version="0.2"; sha256="0y9ymw7114jk1rwiasq400bpgvkxv6rpc954c7v9mgxd3c2nfza7"; depends=[]; }; DoTC = derive2 { name="DoTC"; version="0.2"; sha256="1hjjkmxrbiysy3xl6n4q7kxcygdq68jcsgki1p937zj9a17sa62j"; depends=[ggplot2 plyr]; }; DockerParallel = derive2 { name="DockerParallel"; version="1.0.4"; sha256="1fgs2f5czb05fiqxqp00qggni041ml4s3x05h9n4mmka9mwxi34b"; depends=[jsonlite]; }; Dodge = derive2 { name="Dodge"; version="0.9-2"; sha256="0767n6hyspqrv5cgx3ghhai0qffj6haga7s86pv7mq8zvjcxjlzv"; depends=[]; }; - Dominance = derive2 { name="Dominance"; version="1.2.0"; sha256="1z2gcs7myf90986gzw9g3914ph5cyg6pq6k53h4z566x883q8maz"; depends=[chron igraph]; }; DominoDataCapture = derive2 { name="DominoDataCapture"; version="0.1.1"; sha256="168nvarg58x0w7bi365rd810gl5xz1b2kv8jv0myb7qwxdw1igm4"; depends=[lgr rjson uuid]; }; DoseFinding = derive2 { name="DoseFinding"; version="1.0-2"; sha256="15wpr8wiqjar9hlgcv8y2gjxv6531q3b69jxh2kq10k7bni3rshb"; depends=[lattice mvtnorm]; }; DoubleCone = derive2 { name="DoubleCone"; version="1.1"; sha256="1kbvsj93nn2306s6pgqiiznmlcn2nqsgcxinihl613ivczxhzpqg"; depends=[coneproj MASS Matrix]; }; @@ -1334,27 +1302,21 @@ in with self; { DrugClust = derive2 { name="DrugClust"; version="0.2"; sha256="0acvjqwzkbjmy101m501l7fkfxzkp6zflwvn56li5307xv9ggnfg"; depends=[cclust cluster e1071 MESS ROCR]; }; DstarM = derive2 { name="DstarM"; version="0.4.0"; sha256="0wm5kr2pkgbvh9svjq8zq46zn50hwf58rs3y1ybnwcfjc2q75h1s"; depends=[DEoptim ggplot2 Rcpp RcppArmadillo rtdists RWiener]; }; DtD = derive2 { name="DtD"; version="0.2.2"; sha256="1czspjdxjhbfk2df7wk0x3d1ilwrjqw4s4gdc4hq0gjcjqyx0c39"; depends=[checkmate Rcpp RcppArmadillo]; }; - DunnettTests = derive2 { name="DunnettTests"; version="2.0"; sha256="1sf0bdxays10n8jh2qy85fv7p593x58d4pas9dwlvvah0bddhggg"; depends=[mvtnorm]; }; - DySeq = derive2 { name="DySeq"; version="0.22"; sha256="1sx6mg0bcqb5ff6x305k43zx3fwd16rvxc7xb3ai5h3w7fs9zz7y"; depends=[boot MASS TraMineR]; }; Dykstra = derive2 { name="Dykstra"; version="1.0-0"; sha256="1rc1409ky0ysqr3ccq28yhbs94m6d0z2dfa66k4c7irxjvbagwz6"; depends=[]; }; - DynClust = derive2 { name="DynClust"; version="3.13"; sha256="020zl2yljp47r03rcbzrbdmwk482xx27awwzv4kdrbchbzwhxqgm"; depends=[]; }; + DynClust = derive2 { name="DynClust"; version="3.24"; sha256="0nbbzx0ixblpcbjxx0gp7082nz6nh5vc2l5nzdfq1mqzlq9jy2xn"; depends=[]; }; DynComm = derive2 { name="DynComm"; version="2020.1.6"; sha256="09nhcp9rldwrybwhyg86mgpgwq4hzlpp4rm5a5gl33nnhvcdm0mx"; depends=[igraph Rcpp Rdpack]; }; DynNom = derive2 { name="DynNom"; version="5.0.1"; sha256="1ahs93mks2z423sxk4wjgivdz4ggvwm87dha0aan4fg4jarai98s"; depends=[BBmisc compare dplyr ggplot2 magrittr plotly prediction rms shiny stargazer survival]; }; DynTxRegime = derive2 { name="DynTxRegime"; version="4.9"; sha256="0apwqlqdn5vwb4z7s60r2nsgdw7bzkbxj6199aibyansnsai0s35"; depends=[dfoptim kernlab modelObj rgenoud]; }; DynaRankR = derive2 { name="DynaRankR"; version="1.1.0"; sha256="1fzicainh1dm016cglm2x6j1i2g5r71vgrj0dnsflbxc5v426sqm"; depends=[dplyr rlang]; }; - DynamicDistribution = derive2 { name="DynamicDistribution"; version="1.1"; sha256="1s78hpj2pxjs4vixin1i816qjbn3wk7b8rd2zdjp4d4rbxifcqf5"; depends=[]; }; - DynamicGP = derive2 { name="DynamicGP"; version="1.1-7"; sha256="1fv7lb01qrgpl0a46360s0iqs7wlyqsda4hdm66vfyqr5pygmikv"; depends=[lhs]; }; - DynareR = derive2 { name="DynareR"; version="0.1.2"; sha256="0n53znw0xfzdfd7kzf2kxph3q5zsybwn003zx21hga5c0xq2hsca"; depends=[knitr]; }; + DynamicGP = derive2 { name="DynamicGP"; version="1.1-8"; sha256="1ivrxm0asagvp0ay6hp1l29fv3mcfmad938mwxdcq3iaaj31ilvc"; depends=[lhs]; }; + DynareR = derive2 { name="DynareR"; version="0.1.3"; sha256="06n0gsbn8gphsirj3l1izd84dnjnik6n5l4vkp8flkzynccx3rps"; depends=[kableExtra knitr magrittr]; }; DysPIA = derive2 { name="DysPIA"; version="1.3"; sha256="0ih8sl89h6xbmmjjsbxcvgp6wqk7f1wqzwkc43k3i5w7fgb0hlpc"; depends=[BiocParallel data_table DysPIAData fastmatch parmigene Rcpp]; }; DysPIAData = derive2 { name="DysPIAData"; version="0.1.2"; sha256="1i4z9xhnzih7jnj3l1d6wpgfsayb452sh4q99w2npg1iipsjb1vl"; depends=[]; }; E4tools = derive2 { name="E4tools"; version="0.1.1"; sha256="1kmj1fddybjia9ninhcy75kdmq152zjw7s24chpqr5wsblffr3yx"; depends=[accelerometry anytime BBmisc chron data_table DataCombine doParallel doSNOW foreach ggplot2 hms scales signal]; }; EAinference = derive2 { name="EAinference"; version="0.2.3"; sha256="1kzcfya3z6rf1vqjn72yjymdhrn4dzgmwifh3w6k22cy5jxffzn4"; depends=[hdi limSolve MASS msm mvtnorm Rcpp RcppArmadillo]; }; - EBASS = derive2 { name="EBASS"; version="0.1"; sha256="14hxzj06wrc4ihflr7dqk28fsjwbcizr0jy54vhv0mk1y1gd4201"; depends=[]; }; EBCHS = derive2 { name="EBCHS"; version="0.1.0"; sha256="103k4y105dn8v5yb5xk520404sd7c05cxd9iwh2k2v18kbvg8pdp"; depends=[fda pracma]; }; - EBEN = derive2 { name="EBEN"; version="4.6"; sha256="0gcf5b2viiq69vs8bd8nhk65g9sbzgg212w7zpnz4y6cv9jkk5zz"; depends=[]; }; EBMAforecast = derive2 { name="EBMAforecast"; version="1.0.2"; sha256="0xnzb7hvkc50b65bgq4xbnzks6sb0241lwd6zwp3cz22s3wpyhhr"; depends=[abind gtools Hmisc plyr Rcpp separationplot]; }; EBPRS = derive2 { name="EBPRS"; version="2.1.0"; sha256="14wal81cai08xr26fpc2w4ramr5jyv7vwfyqb5hzw3kqxx76y9xx"; depends=[BEDMatrix data_table ROCR]; }; - EBglmnet = derive2 { name="EBglmnet"; version="4.1"; sha256="0wlscmimj74alcr8k5h1g3alvlpss4g2ah7zkpd42akam3zb4s5z"; depends=[]; }; EBrank = derive2 { name="EBrank"; version="1.0.0"; sha256="1qzhrr3n2zv31mjp224b35324nr9nigzazyfv11j4zhwl1ipf632"; depends=[]; }; ECGofTestDx = derive2 { name="ECGofTestDx"; version="0.4"; sha256="0y8bw1k9spwxyzc7vsi2iblnmjsidxbybjrzzh2j6frjmv3rk4g1"; depends=[bootstrap orthopolynom]; }; ECLRMC = derive2 { name="ECLRMC"; version="1.0"; sha256="01z2hmbpb754s2rsvx3i5wf7kkkr2mvs2g89ih2bqrif7w5rmgyg"; depends=[softImpute]; }; @@ -1378,11 +1340,11 @@ in with self; { EESPCA = derive2 { name="EESPCA"; version="0.5.0"; sha256="1vkyds5mpiaccg18i6483zymikadxb7mq4gsqh85r291zvllb7wl"; depends=[MASS PMA rifle]; }; EFA_MRFA = derive2 { name="EFA.MRFA"; version="1.1.2"; sha256="0p1zkfwjch9y39r7hjccjk7vfbnfwpdak6jfjs1sdpqkjqiw3r86"; depends=[ggplot2 PCovR psych reshape2 scales]; }; EFA_dimensions = derive2 { name="EFA.dimensions"; version="0.1.7.4"; sha256="0798kmgh1d7k389kgw31qg617vhqqgz3ychw7ji4xqkxjadvm34n"; depends=[EFAtools polycor psych]; }; - EFAtools = derive2 { name="EFAtools"; version="0.4.0"; sha256="15cnwma6xbq1hq28cj22i3gq6rd78saxn3nl1cvarwvrlfh75a2f"; depends=[checkmate cli crayon dplyr future future_apply ggplot2 GPArotation lavaan magrittr progress progressr psych Rcpp RcppArmadillo rlang stringr tibble tidyr viridisLite]; }; + EFAtools = derive2 { name="EFAtools"; version="0.4.1"; sha256="1f6x89gki2mxyalxgw4d8hs1b3l49cq8agsah5li9z5xcczbvw01"; depends=[checkmate cli crayon dplyr future future_apply ggplot2 GPArotation lavaan magrittr progress progressr psych Rcpp RcppArmadillo rlang stringr tibble tidyr viridisLite]; }; EFAutilities = derive2 { name="EFAutilities"; version="2.1.1"; sha256="0kdwdjv4c9rfy49qs7a4134vwa2sm2pcam17a3xii2dq8mghg1za"; depends=[GPArotation MASS mvtnorm plyr]; }; EFDR = derive2 { name="EFDR"; version="1.2"; sha256="1k6y2qxfw5py1brh25apmzqm00y3a458x0wrrmdg604g1m9zlkg5"; depends=[copula doParallel dplyr foreach gstat Matrix sp tidyr waveslim]; }; EFS = derive2 { name="EFS"; version="1.0.3"; sha256="1q8cf8dnxpv5s3lr9145y0wjhak4rz18dzah4xfs5qr4c8nlpl54"; depends=[party pROC randomForest ROCR]; }; - EGAnet = derive2 { name="EGAnet"; version="1.0.0"; sha256="0mr63x5gx8yy9gp19glvqcsdmxbd29mnv4v29kjpfr21ij46h60a"; depends=[dplyr fitdistrplus GGally ggplot2 ggpubr glasso igraph lavaan Matrix network NetworkToolbox qgraph semPlot wTO]; }; + EGAnet = derive2 { name="EGAnet"; version="1.1.0"; sha256="07ca1p4gqyhbzvfqvrwhcx4j7lqrw9mq167vkw8mr6x27qq3vjr0"; depends=[fitdistrplus GGally ggplot2 ggpubr glasso igraph lavaan Matrix matrixcalc network OpenMx pbapply qgraph semPlot]; }; EGRET = derive2 { name="EGRET"; version="3.0.7"; sha256="1fxpcdsq7njf1hjy3a4i0fx0ah9v7jzmdwg4c7009nikyhx5ri6x"; depends=[dataRetrieval fields foreach MASS survival truncnorm]; }; EGRETci = derive2 { name="EGRETci"; version="2.0.4"; sha256="1g01a03smn5yp261cyk3x310m1mcv4bqyh8y123wam9gpa7dxrp6"; depends=[binom EGRET]; }; EHRtemporalVariability = derive2 { name="EHRtemporalVariability"; version="1.1.4"; sha256="02izrgl526znn4xs10c5l3gv0b5chmgr376i26nli988cypmf32h"; depends=[dplyr lubridate MASS plotly RColorBrewer scales viridis xts zoo]; }; @@ -1390,6 +1352,7 @@ in with self; { EILA = derive2 { name="EILA"; version="0.1-2"; sha256="0wxl9k4fa0f7jadw3lvn97iwy7n2d02m8wvm9slnhr2n8r8sx3hb"; depends=[class quantreg]; }; EIX = derive2 { name="EIX"; version="1.2.0"; sha256="02ry0aqqnd0zh6zbvx1dbq3sdahyqcgabhkvbbw4ig0qk70w62aj"; depends=[DALEX data_table ggiraphExtra ggplot2 ggrepel iBreakDown MASS purrr scales tidyr xgboost]; }; EKMCMC = derive2 { name="EKMCMC"; version="1.1.2"; sha256="0filw1xikbv55h7xswlqifd30d43b9y3h2m6i0zv8v54y8mmszfg"; depends=[numDeriv]; }; + EL = derive2 { name="EL"; version="1.1"; sha256="0a6zbsq37miy7mv1b2gn3nlddlxpl6v5338lqxa2hn8ykj4vbs63"; depends=[]; }; EL2Surv = derive2 { name="EL2Surv"; version="1.1"; sha256="0bn2481rf61qnia468y7k95hhazjaghrv919a2y9ar5wcz5nq2kk"; depends=[survival]; }; ELCIC = derive2 { name="ELCIC"; version="0.2.0"; sha256="1iildkyiia2zinnfjyxvcmc1xd7chrcsdqzc0v7cl9b1jsqa8361"; depends=[bindata geepack MASS mvtnorm PoisNor wgeesel]; }; ELISAtools = derive2 { name="ELISAtools"; version="0.1.5"; sha256="18f2adhw85f0hsz5gb6xhi0w2phcq364xy9y1jri6ckzs8g0pny7"; depends=[minpack_lm R2HTML stringi]; }; @@ -1403,7 +1366,7 @@ in with self; { EMD = derive2 { name="EMD"; version="1.5.9"; sha256="0lga27nl7c3h02xrbb2hcwlb9dyli340v0hb3vwwzqrhmr0fl806"; depends=[fields locfit]; }; EMDANNhybrid = derive2 { name="EMDANNhybrid"; version="0.1.0"; sha256="0mm5zfkrja9pz58psp7b6r1lpixaa9y685xxv9srv9l9cl8d892j"; depends=[EMD forecast nnfor]; }; EMDSVRhybrid = derive2 { name="EMDSVRhybrid"; version="0.1.0"; sha256="0wis8dh4xd5xldrrfzfr625pix2fvp139q6kj9ff2m6p5wafiabw"; depends=[e1071 EMD]; }; - EML = derive2 { name="EML"; version="2.0.5"; sha256="0g4ilk2d68i1iz2b0ip6kngygvsw457x17f2vhfy3b26xf6ch2q1"; depends=[digest dplyr emld jqr jsonlite rmarkdown uuid xml2]; }; + EML = derive2 { name="EML"; version="2.0.6.1"; sha256="1k2chfz6qixa6jsikqgilqp8j49mcshn725ck1h77bacfxfhf7za"; depends=[digest dplyr emld jqr jsonlite rmarkdown uuid xml2]; }; EMMAgeo = derive2 { name="EMMAgeo"; version="0.9.7"; sha256="1wz4zw45xfqbk589cpd188j7619h2ar2czfkisil9x8ksijfixls"; depends=[caTools GPArotation limSolve matrixStats shiny]; }; EMMIXSSL = derive2 { name="EMMIXSSL"; version="1.1.0"; sha256="14zhb065amcs7w7kr3ygwpclnf0fxil8xbipb2w0pq24d091vlxd"; depends=[mvtnorm]; }; EMMIXgene = derive2 { name="EMMIXgene"; version="0.1.3"; sha256="0a5q78s9y6ba1641lrv87kglg39x9wbk5xg7ihzbpl4adrb5sz4f"; depends=[BH ggplot2 mclust Rcpp RcppArmadillo reshape scales]; }; @@ -1422,7 +1385,6 @@ in with self; { ENMTools = derive2 { name="ENMTools"; version="1.0.6"; sha256="0idjq7jk1yrbk9w0799x991n1sj71j09hkgn6dhwshgpyxh7c4qj"; depends=[dismo ENMeval forcats ggplot2 ggpubr gridExtra knitr lhs magrittr raster rgdal rgeos sp spatstat_geom spatstat_random]; }; ENMeval = derive2 { name="ENMeval"; version="2.0.3"; sha256="0h9wikxs01xhpkp1khhxnnqvg4fgmdvh37jh15nz7i4xilx1ffab"; depends=[dismo doParallel doSNOW dplyr foreach ggplot2 glmnet magrittr maxnet rangeModelMetadata raster rlang sp testthat tidyr]; }; EPGMr = derive2 { name="EPGMr"; version="1.0.0"; sha256="1ii4lccv4hyydy3sd5l7c22pgx27x3mdml20sfbdj85pmpyab6q9"; depends=[]; }; - EPP = derive2 { name="EPP"; version="0.3.6.1"; sha256="015hp5f3nrf0hqi11cgsi43a97h9cvny4d75hfjd10zf0fj261h9"; depends=[assertthat curl deldir dplyr flexclust httr leaflet leaflet_extras maptools nngeo osrm plyr rgdal rgeos sf sp]; }; EPT = derive2 { name="EPT"; version="0.7.6"; sha256="1hkisfisi63dd9lai662y387av1g77fkbai0p2a346n8zgahysji"; depends=[]; }; EPX = derive2 { name="EPX"; version="1.0.4"; sha256="0d0qddk4c835gkh4lydaypxzakjz3qw9ai7y35kbaflj08fismc6"; depends=[doParallel doRNG foreach nnet randomForest rngtools]; }; EQL = derive2 { name="EQL"; version="1.0-1"; sha256="0pa33h0f30l352m6ix296l55lvqxdaib666x2dwy9zx0lmk23w8m"; depends=[lattice ttutils]; }; @@ -1430,7 +1392,6 @@ in with self; { ER = derive2 { name="ER"; version="1.1.0"; sha256="03kbr9dams961zqa2mn1x63wp6xbp0bnwfskbxppwy28af4wqk8v"; depends=[ggplot2 glmnet gridExtra pls plsVarSel scales]; }; ERP = derive2 { name="ERP"; version="2.2"; sha256="17i04rgfj9crnvpi7mf2spwmaw9jgw4kn5fx6x9xbl9cvwwx6q4k"; depends=[corpcor fdrtool irlba mnormt pacman]; }; ERSA = derive2 { name="ERSA"; version="0.1.3"; sha256="0djh633vmc89vl4bp7p4bazlb0pshpd2yckfj0yjk6vc9lrbql69"; depends=[broom car combinat dplyr ggplot2 leaps miniUI purrr RColorBrewer shiny tidyr]; }; - ES = derive2 { name="ES"; version="1.0"; sha256="1rapwf6kryr6allzbjk6wmxpj9idd3xlnh87rwbh6196xb7rp8lv"; depends=[]; }; ESEA = derive2 { name="ESEA"; version="1.0"; sha256="06r5lki32mxkznj6yxvlz0ikqcxm3jbaralv4qp9xrw6dy6yyg27"; depends=[igraph parmigene XML]; }; ESG = derive2 { name="ESG"; version="1.2"; sha256="17kw82dikcibqsdb1fvbx2x2f3shzbqggygabprcvwki8bg9hgni"; depends=[]; }; ESTER = derive2 { name="ESTER"; version="0.2.0"; sha256="1jiyqq5hgqc754r434sik9jnlpw66xz56cjdf5ig95qkffzsg224"; depends=[brms cowplot doParallel dplyr foreach ggplot2 lme4 magrittr rlang tidyr]; }; @@ -1455,7 +1416,7 @@ in with self; { EcoHydRology = derive2 { name="EcoHydRology"; version="0.4.12.1"; sha256="075kgy6cxppkclk6nj5xs1f5yv9w8cpr09xwhf2101a6wswknb88"; depends=[DEoptim operators topmodel XML]; }; EcoIndR = derive2 { name="EcoIndR"; version="1.8"; sha256="008wgp9zc8a8knz9ighgavrdm0yf37m5jahnq5kndjhld0359z6h"; depends=[rgeos]; }; EcoNetGen = derive2 { name="EcoNetGen"; version="0.2.3"; sha256="05j8m9vzkwlsw1h69s5myhbg85vyhqdxcl9r5mdwsrk9f58wajmz"; depends=[ggplot2 igraph]; }; - EcoTroph = derive2 { name="EcoTroph"; version="1.6"; sha256="0zi6g0ra107s47r32mm9h6r1wll3avi0mpjmhcr0nj9y48nv14w3"; depends=[XML]; }; + EcoTroph = derive2 { name="EcoTroph"; version="1.6.1"; sha256="0nrq6n7amz8l6rk0wfyrih7rkic96yc02rpk4szis81v7yvm7346"; depends=[XML]; }; EcoVirtual = derive2 { name="EcoVirtual"; version="1.1"; sha256="1aryl2sb5ak390lgnm427ilm6xv9lmsjhwdnapzc033zvqb099gj"; depends=[]; }; Ecohydmod = derive2 { name="Ecohydmod"; version="1.0.0"; sha256="0imkzjqp3g28l42jz5m4p85wg5rawmn9hy1wys9xndnaliv6d7r2"; depends=[]; }; EconDemand = derive2 { name="EconDemand"; version="1.0"; sha256="1slpwiaxj7w21zdri9myrzwbwzl62m3cnp0g4fr2rkdlzgb6j5yj"; depends=[]; }; @@ -1468,15 +1429,15 @@ in with self; { EffectTreat = derive2 { name="EffectTreat"; version="1.1"; sha256="1kw1vq9y1q3xyiqsk855wjn9jqkzdh6h4xklbl9kvbqsvvhhsgkz"; depends=[]; }; EffectsRelBaseline = derive2 { name="EffectsRelBaseline"; version="0.5"; sha256="1dsnakcrgmlx44599ii92wvhxbxrh0hij59709wsskx1x1152zvh"; depends=[]; }; EfficientMaxEigenpair = derive2 { name="EfficientMaxEigenpair"; version="0.1.4"; sha256="1s0i9a2vk2g4f5gadsvzjfkw91hcjsrbyjg2vgnj1v17xrwgp40w"; depends=[]; }; - EgoCor = derive2 { name="EgoCor"; version="0.1.0"; sha256="197wf7v51qf2wc2gks68v3kpkcv0fmrbj3wrksixh1sphbl52rig"; depends=[geoR lme4 Rdpack shiny SpatialTools]; }; EigenR = derive2 { name="EigenR"; version="1.2.2"; sha256="02cg898hm2byhnbfihg8mnygjsfpyrpq4y3lw2dnrglcj75qr71b"; depends=[Rcpp RcppEigen]; }; EleChemr = derive2 { name="EleChemr"; version="1.2.0"; sha256="1wr2lkaf56qxsnqi7mgbgzy72lhkr0xlr1w1l9hy1dpmmqcqw7l3"; depends=[ggplot2]; }; - ElliptCopulas = derive2 { name="ElliptCopulas"; version="0.1.2"; sha256="0prc83vlzxyzmi0n3y1f5j7r7mc2dzm7gs1q3s7n501y1lgmb11l"; depends=[Matrix pbapply pcaPP Rmpfr Runuran]; }; + ElliptCopulas = derive2 { name="ElliptCopulas"; version="0.1.3"; sha256="1hnkhd9hw2550kzjyycl1hzm9pk9j11n96hka59z8x74vrz980qp"; depends=[Matrix pbapply Rmpfr Runuran wdm]; }; EloChoice = derive2 { name="EloChoice"; version="0.29.4"; sha256="1g8ivvnv16c2gniwd9xa9z89bm4rac0nrg3mcg1risgf9yk4rgm5"; depends=[psychotools Rcpp RcppArmadillo Rdpack]; }; EloOptimized = derive2 { name="EloOptimized"; version="0.3.1"; sha256="09bg1gm8jhjj0r7yzdgi2zlyavrizgiljwh26mpb6ng6p5mkliid"; depends=[BAMMtools dplyr lubridate magrittr reshape2 rlang]; }; EloRating = derive2 { name="EloRating"; version="0.46.11"; sha256="09nh3ia4s3c9yjhw0f0haqb26fryfc4lf9rgfcbqqzzwgdr1invj"; depends=[network Rcpp RcppArmadillo Rdpack sna zoo]; }; ElstonStewart = derive2 { name="ElstonStewart"; version="1.1"; sha256="1y2g4x3fhi78c2406bk8r8c3x9zhx8ya3qlbnypdm65j0minixsn"; depends=[digest kinship2]; }; EmbedSOM = derive2 { name="EmbedSOM"; version="2.1.1"; sha256="1w61dni4vsglxqdhwdy5dcmzb6hx1wb9fhfki8wmal1yaza23ljy"; depends=[FNN ggplot2 igraph Matrix Rtsne umap uwot]; }; + EmiR = derive2 { name="EmiR"; version="1.0.3"; sha256="0cf05k8iaa18j4hqyz713ibaw03h9pcf440n0yc6l256iq5xwsrx"; depends=[data_table dplyr gganimate ggplot2 mathjaxr plot3D Rcpp RcppProgress Rdpack testthat tibble tictoc tidyr]; }; EmiStatR = derive2 { name="EmiStatR"; version="1.2.3.0"; sha256="1cwzzkynhnpjd1slnifdmkrshfpv99ryilxj27f98kwgbnb6i81a"; depends=[doParallel foreach lattice xts zoo]; }; EmissV = derive2 { name="EmissV"; version="0.665.6.0"; sha256="06bsn9lgi8bzcs073d664i1q61bqg4w08x60qk9scvxhb3b5q49i"; depends=[data_table ncdf4 raster sf sp units]; }; EmpiricalCalibration = derive2 { name="EmpiricalCalibration"; version="3.0.0"; sha256="02mcnxd3ndz7zafpxhyf52am5ncbwz743apy2n3q0i07hs33blyk"; depends=[ggplot2 gridExtra Rcpp rlang]; }; @@ -1486,7 +1447,7 @@ in with self; { EnsCat = derive2 { name="EnsCat"; version="1.1"; sha256="1rp354fqq2ihjrmqw9j1qdy86md80xml5sgh2zbyabw3zddmgyn2"; depends=[dendextend ggdendro ggplot2 seqinr]; }; EnsembleBase = derive2 { name="EnsembleBase"; version="1.0.2"; sha256="1wbkh89gz6m2m9hxbcymsymz3b7pynhdwfyq4qg3h4wn8409anxy"; depends=[bartMachine doParallel e1071 foreach gbm glmnet kknn nnet randomForest]; }; EnsembleCV = derive2 { name="EnsembleCV"; version="0.8"; sha256="1r9nmi2278lrwp5lpxhi78k10x8a5f5rh9xf1z5gfkc0bmpkhkvz"; depends=[EnsembleBase]; }; - EnsemblePCReg = derive2 { name="EnsemblePCReg"; version="1.1.1"; sha256="1x9n8wjr2cdmlc36c2g7sra7f0cjmgwiyxvll9byfm1lncni2kn9"; depends=[EnsembleBase]; }; + EnsemblePCReg = derive2 { name="EnsemblePCReg"; version="1.1.4"; sha256="0pii3w9dyv1505s92b03i42yiwq5vwa051674yzqxijj2mz7pvdh"; depends=[EnsembleBase]; }; EnsemblePenReg = derive2 { name="EnsemblePenReg"; version="0.7"; sha256="00218yh0vzlb5g94asq5nz4i8blppskdzz9fl4c0v3fld3kxz2md"; depends=[EnsembleBase glmnet]; }; EntropyEstimation = derive2 { name="EntropyEstimation"; version="1.2"; sha256="13kb83lfpkw6yq687j0ci23yn5c9dqjibybyyaplk6jixy08lrvy"; depends=[]; }; EntropyExplorer = derive2 { name="EntropyExplorer"; version="1.1"; sha256="02ljnq9ayxg4lrrnb6nlxr1k5ki8dd5i8hjb9fvvb19hwr2id5h4"; depends=[]; }; @@ -1498,14 +1459,14 @@ in with self; { EnvStats = derive2 { name="EnvStats"; version="2.7.0"; sha256="10axzd4458lwvjibkk3i1szpmnx1hnhair3ihclwfmh8nvaz19h9"; depends=[ggplot2 MASS nortest]; }; EnviroPRA = derive2 { name="EnviroPRA"; version="1.0"; sha256="0yirh3vy7wap0qmm3kvjz9y68gcvp9i8qshv80wh8aijxwklpr8n"; depends=[fitdistrplus kSamples MASS truncdist]; }; EnviroStat = derive2 { name="EnviroStat"; version="0.4-2"; sha256="0ckax6vkx0vwczn21nm1dr8skvpm59xs3dgsa5bs54a3xhn5z9hs"; depends=[MASS]; }; - Epi = derive2 { name="Epi"; version="2.44"; sha256="1wcxr1f7irgfdwzz4vf67114yhxrhxxxnhy4hfaww0zy91vzxx10"; depends=[cmprsk data_table dplyr etm MASS Matrix mgcv numDeriv plyr purrr survival zoo]; }; + Epi = derive2 { name="Epi"; version="2.46"; sha256="0s3ij0rya4wd7k97kc4s3pwj1d1ypaxl1s7zqr6sa07hp4a8fzz0"; depends=[cmprsk data_table dplyr etm magrittr MASS Matrix mgcv numDeriv plyr survival zoo]; }; EpiContactTrace = derive2 { name="EpiContactTrace"; version="0.16.0"; sha256="025zv1mskd3s71bn0fbaf88b36a5rmbpplv6lmiyp8rxrfk05vs9"; depends=[]; }; EpiCurve = derive2 { name="EpiCurve"; version="2.4-2"; sha256="1z81zrg96hmgj2j37vwwg0bd84bq80ck3f704w9j6v0drckzh03j"; depends=[dplyr ggplot2 ISOweek RColorBrewer scales tibble timeDate]; }; EpiDynamics = derive2 { name="EpiDynamics"; version="0.3.1"; sha256="0m6yay3r7dqih19f76wxwgq6dh9p1zmp5d9ilj9nd262q61jcy53"; depends=[deSolve ggplot2 reshape2]; }; EpiEstim = derive2 { name="EpiEstim"; version="2.2-4"; sha256="12zv1mlb0gqsvff1s0fvqgxqk42c7y9gz3h94mjmf1wbmhsjcqnf"; depends=[coarseDataTools coda fitdistrplus ggplot2 gridExtra incidence reshape2 scales]; }; EpiILM = derive2 { name="EpiILM"; version="1.5.2"; sha256="0drs4qywx9axs7k5qk7sp5r3g8pykn4lqqbm0hxyl24r6b5l3d6b"; depends=[adaptMCMC coda LaplacesDemon]; }; EpiILMCT = derive2 { name="EpiILMCT"; version="1.1.7"; sha256="1yjcjxf5m1qbb6p09g34wkr4q13g65ly11kxh95r22cdl85jmlq3"; depends=[coda igraph]; }; - EpiLPS = derive2 { name="EpiLPS"; version="1.0.2"; sha256="1fjy7rdqmf2crlhr5bbm5h25wskmw6yh8mb9isp0dc33r9pn2iwf"; depends=[coda crayon EpiEstim ggplot2 gridExtra MASS progress Rcpp RcppArmadillo]; }; + EpiLPS = derive2 { name="EpiLPS"; version="1.0.5"; sha256="09gj3zkgj3mh4i3rgm2z3l9r53gw396yir0bnjfs1g4r919jank3"; depends=[coda crayon EpiEstim ggplot2 gridExtra MASS progress Rcpp RcppArmadillo]; }; EpiModel = derive2 { name="EpiModel"; version="2.2.1"; sha256="0gykqk9n3i4779zm1npsq9q07230nrxk0cm48gmnq587yf7n6fa2"; depends=[ape deSolve doParallel dplyr ergm foreach ggplot2 lazyeval network networkDynamic RColorBrewer Rcpp statnet_common tergm tibble]; }; EpiNow2 = derive2 { name="EpiNow2"; version="1.3.2"; sha256="1rcyhk0f18asrym9zd7hr5ss7aw2dd2m5wrjcsqkr8q7x6apwh3g"; depends=[BH cowplot data_table futile_logger future future_apply ggplot2 lifecycle lubridate patchwork progressr purrr R_utils Rcpp RcppEigen rlang rstan runner scales StanHeaders truncnorm]; }; EpiReport = derive2 { name="EpiReport"; version="1.0.2"; sha256="1dh9rjdjgmwzvfslzgnmd37ipj7ydbn4pnngz4sw7nknqy7r4dpx"; depends=[dplyr flextable ggplot2 officer png tidyr tidyselect zoo]; }; @@ -1525,7 +1486,7 @@ in with self; { EthSEQ = derive2 { name="EthSEQ"; version="2.1.4"; sha256="0bffms4d7bg516kma1hcyg8y4czjmz5vizcshh3g990wimmqcwb1"; depends=[data_table gdsfmt geometry MASS plot3D SNPRelate]; }; EuclideanSD = derive2 { name="EuclideanSD"; version="0.1.0"; sha256="1w5s1zkb81v150nvaygvyla2x0vh4c99vd5jw53jcq68sv9hby3i"; depends=[shiny]; }; EurosarcBayes = derive2 { name="EurosarcBayes"; version="1.1"; sha256="12311s6ibw9q6kykhh689r93r7mwjhwrhkzdpc75grvw6ilgjmpm"; depends=[clinfun data_table plyr shiny VGAM]; }; - EvCombR = derive2 { name="EvCombR"; version="0.1-2"; sha256="1f5idjaza91npf64hvcnpgnr72mpb7y6kf91dp57xy9m14k7jx5g"; depends=[]; }; + EvCombR = derive2 { name="EvCombR"; version="0.1-4"; sha256="038crxa3a7h8zxjmcy98pq1zlc6gnlqjy39srh8mai9ksalx672x"; depends=[]; }; Evacluster = derive2 { name="Evacluster"; version="0.1.0"; sha256="01nxclrp90qhlnxl0yf2srppglic6m3f7pl35h62r6kxic0lrzhs"; depends=[]; }; EvalEst = derive2 { name="EvalEst"; version="2021.2-1"; sha256="0ws7x0dkzb3h2m801dkzx2as146whm63mcipy4iia90jd9944zir"; depends=[dse setRNG tfplot tframe]; }; EvaluateCore = derive2 { name="EvaluateCore"; version="0.1.2"; sha256="0yqv5srnbczdx8h3cxvj6hfas0436xc8hz698zi7ypms34r9c1ly"; depends=[agricolae car cluster dplyr entropy ggcorrplot ggplot2 gridExtra kSamples mathjaxr psych Rdpack reshape2 vegan]; }; @@ -1536,9 +1497,9 @@ in with self; { EventStudy = derive2 { name="EventStudy"; version="0.37"; sha256="1bf7ngwl3gxq3gi2s9z2c4pd0d2gjh9y9vrwzay6x66981sa84h9"; depends=[curl data_table dplyr ggplot2 httr jsonlite magrittr miniUI openxlsx purrr RColorBrewer readr rlang rstudioapi scales shiny stringr testthat tidyquant tidyr]; }; EventWinRatios = derive2 { name="EventWinRatios"; version="1.0.0"; sha256="1hsq4g7hh71lzxzkmhm15mk3xpxaq75rqhgslf4qif6x7pm0p859"; depends=[]; }; EvidenceSynthesis = derive2 { name="EvidenceSynthesis"; version="0.2.3"; sha256="1qx8l5fwnwigpz8b25i84h9wnqb6lclv03r251ww7j3gd7mybd76"; depends=[BeastJar coda Cyclops EmpiricalCalibration ggplot2 gridExtra HDInterval meta rJava rlang survival]; }; - EviewsR = derive2 { name="EviewsR"; version="0.1.1"; sha256="104kn9k3bbzwlp3jn9b7m512i2p6vfzyhcvznn8gbzzsm7dy8jsi"; depends=[knitr magrittr]; }; + EviewsR = derive2 { name="EviewsR"; version="0.1.2"; sha256="1lgnfqbx0lmrvmcm47yrq1hnwix2lccy6sgyc9bp76170hmsifz4"; depends=[knitr magrittr]; }; EvoRAG = derive2 { name="EvoRAG"; version="2.0"; sha256="0gb269mpl2hbx1cqakv3qicpyrlfb4k8a3a7whhg90masbgmh8f6"; depends=[]; }; - EvolutionaryGames = derive2 { name="EvolutionaryGames"; version="0.1.0"; sha256="1v6xpxk4kbjbmv8vh517rd76gyrd9znpxqdh4jqz8lvdpnpla4wv"; depends=[deSolve geometry ggplot2 interp MASS reshape2 rgl]; }; + EvolutionaryGames = derive2 { name="EvolutionaryGames"; version="0.1.1"; sha256="0wbqdpzh6m2nacv6s30s0rf7lalf8qcfnl3w5jvlscdcg2qwz4v2"; depends=[deSolve geometry ggplot2 interp MASS reshape2]; }; Evomorph = derive2 { name="Evomorph"; version="0.9"; sha256="1br2fyggwz2mxpic8sk384xq1lpbpv0j5gf6xyzhkn2n7kfpf6d5"; depends=[geomorph ggplot2 reshape2 stringr]; }; EwR = derive2 { name="EwR"; version="1.4"; sha256="1i0cwyylr1lqilykn1q2y1ad2gawfqkw9c51g04yn061c623pkam"; depends=[]; }; ExPanDaR = derive2 { name="ExPanDaR"; version="0.5.3"; sha256="1y4ccyvlvdx9lcgpyns6k2npc0rzwk8db4bmbi3pq9xmv7ycgmcz"; depends=[corrplot dplyr DT ggplot2 kableExtra lmtest multiwayvcov openssl plm rio rlang scales shiny shinycssloaders stargazer tictoc tidyr zip]; }; @@ -1548,7 +1509,7 @@ in with self; { ExactMed = derive2 { name="ExactMed"; version="0.1.0"; sha256="0mnmlfnpqkz82iphga3b3xd85xh7jb211m6ahx4jf6y6y4rv5isj"; depends=[logistf]; }; ExactMultinom = derive2 { name="ExactMultinom"; version="0.1.2"; sha256="1ygsiwcsmda0pbp7lzr03sb461mr9fff7hxp1lil40y9z0xgdmmb"; depends=[Rcpp]; }; ExamPAData = derive2 { name="ExamPAData"; version="0.5.0"; sha256="1wjzg5b3xcl5njk95h2c8xz4k727d62182nbf49qrvd3nbd3bscj"; depends=[]; }; - ExceedanceTools = derive2 { name="ExceedanceTools"; version="1.2.2"; sha256="084sc6pggfbcyavhfnd5whyigw7dyjhb4cxmxi0kh2jiam5k8v5b"; depends=[SpatialTools splancs]; }; + ExceedanceTools = derive2 { name="ExceedanceTools"; version="1.3.4"; sha256="1vcyla5rgz8ivqzq4qq4bnw4qghkqww6zziwp0374ik86r2f6krb"; depends=[matrixStats SpatialTools splancs]; }; ExcelFunctionsR = derive2 { name="ExcelFunctionsR"; version="0.1.4"; sha256="1j3vfvfk8lp46zb6fwvq9lafk7r2qrnx4vxyhaih71c0a8g6dz9n"; depends=[lubridate plyr roperators stringr tidyr]; }; ExcessMass = derive2 { name="ExcessMass"; version="1.0"; sha256="1z8l1lja02wxw8l72s3bq6sgjymn5929n123xk6b7ndd52zlfgf5"; depends=[]; }; ExhaustiveSearch = derive2 { name="ExhaustiveSearch"; version="1.0.1"; sha256="1wb3bf1ilml5cilm740rh8ngiybxhxg6h6nzh1rlqd6wgfp17mzh"; depends=[Rcpp RcppArmadillo]; }; @@ -1564,7 +1525,7 @@ in with self; { ExtDist = derive2 { name="ExtDist"; version="0.6-4"; sha256="006q9xahq5zk7s6yc44ihjkr6cnjzp10pgw47zyk1rk81pjblzp3"; depends=[numDeriv optimx]; }; ExtMallows = derive2 { name="ExtMallows"; version="0.1.0"; sha256="0903jslp74s1vzbklq88y2dm0dgkhd6g77b7aipxam98933k0hzz"; depends=[]; }; ExtractTrainData = derive2 { name="ExtractTrainData"; version="9.1.5"; sha256="132f43mk2mjsfv9pfhj1371b4vxnqmnj5lf8xvfznf57xjna7wp1"; depends=[raster rgdal rgeos sp]; }; - ExtremalDep = derive2 { name="ExtremalDep"; version="0.0.3-4"; sha256="0q25m2wp2rps5qlzcqg0wdam2yv73nny1l31bp2dmszjjirqcq6n"; depends=[CompRandFld copula evd fda gtools mvtnorm nloptr numDeriv quadprog sn]; }; + ExtremalDep = derive2 { name="ExtremalDep"; version="0.0.3-5"; sha256="1zfgd2n4by85r39gwdnnng2ns5wv8h64vd1j9g4x4ffqhcdbxj3d"; depends=[copula evd fda gtools mvtnorm nloptr numDeriv quadprog sn]; }; ExtremeBounds = derive2 { name="ExtremeBounds"; version="0.1.6"; sha256="12bc4mmkmggvk3kfmz6nq13fa2470z0bx8smnvq9vf1ypdiiw85y"; depends=[Formula]; }; ExtremeRisks = derive2 { name="ExtremeRisks"; version="0.0.4"; sha256="1mvkrwyj9kwg35dzm9jzx311qqd4v3nnbrr6d64x476ni4pnrbl8"; depends=[copula evd mvtnorm plot3D pracma tmvtnorm]; }; FABInference = derive2 { name="FABInference"; version="0.1"; sha256="0d11vxxa0mry735n7an8n97wmxyffsj4hirxlysljs941zhkhhw4"; depends=[MASS]; }; @@ -1573,7 +1534,7 @@ in with self; { FADPclust = derive2 { name="FADPclust"; version="0.1.0"; sha256="0b4b77wi25ldrq4w2vqhh3g1sm89ad0ghajfmfaqp84v30d8hcpw"; depends=[cluster fda fda_usc funData MFPCA]; }; FAIRmaterials = derive2 { name="FAIRmaterials"; version="0.0.2"; sha256="169hcwjm0plhkqbhz3b5cqgc2nnkibn94cimrs39sn9z62radb7x"; depends=[dplyr glue stringr]; }; FAMILY = derive2 { name="FAMILY"; version="0.1.19"; sha256="1912l2zj2cmh8yx8lkg8fpgvfddn6wbi1vrr4yx04mh73gk1s5mk"; depends=[pheatmap pROC]; }; - FAMT = derive2 { name="FAMT"; version="2.5"; sha256="0mn85yy9zmiklfwqjbhbhzbawwp2yqrm9pvm8jhasn9c3kw1pcp2"; depends=[impute mnormt]; }; + FAMT = derive2 { name="FAMT"; version="2.6"; sha256="0msb02fz8blm6wgg31xwwxv8phg35w7844q1xz4v307ixz2qgs1h"; depends=[impute mnormt]; }; FAMetA = derive2 { name="FAMetA"; version="0.1.4"; sha256="1c5y3x06ln1w8nkwmnc13hn8jhj0vbmwbx70kylcf93a1fq5rkbz"; depends=[accucor gplots gtools knitr LipidMS minpack_lm plyr rmarkdown scales tidyr]; }; FAMoS = derive2 { name="FAMoS"; version="0.3.0"; sha256="14gr9wv9bpibk0rrzzwijvdncx1fgnpbv55nqzbb4jhq7fdckmsa"; depends=[future R_utils]; }; FAO56 = derive2 { name="FAO56"; version="0.1.0"; sha256="0dl56gdsmx3ixxakz2xqrirss5xxbz62mvp7jdrgaizrn8xd802i"; depends=[]; }; @@ -1585,14 +1546,13 @@ in with self; { FAmle = derive2 { name="FAmle"; version="1.3.7"; sha256="1g6jacbphbfqn0kkfgdv0g9v8xnzx70872byy0rxp5g2ags6hj2b"; depends=[mvtnorm]; }; FAwR = derive2 { name="FAwR"; version="1.1.2"; sha256="1x90wvp0w7fhid7i5160b4fiv4xn5mpvy33zjzy0mvqvp0yp8xf0"; depends=[glpkAPI lattice MASS]; }; FBFsearch = derive2 { name="FBFsearch"; version="1.1"; sha256="17fi501prnwwy5dh7kv7cx2zlz2dknjj542ga024s7jvg7i2rhg0"; depends=[Rcpp RcppArmadillo]; }; - FBN = derive2 { name="FBN"; version="1.5.1"; sha256="0723krsddfi4cy2i3vd6pi483qjxniychnsi9r8nw7dm052nb4sf"; depends=[]; }; FCGR = derive2 { name="FCGR"; version="1.0-0"; sha256="015nnnc9fasx0qjrc3lbxv14rqwyx36xzsw9076grwm5pqahrdsb"; depends=[kerdiest KernSmooth MASS mgcv nlme pspline sfsmisc]; }; FCMapper = derive2 { name="FCMapper"; version="1.1"; sha256="1yjh8rs65nqslvwv7x4rif469zds41s7v3vhq6pca1y17kvj2in1"; depends=[igraph]; }; FCO = derive2 { name="FCO"; version="0.7.2"; sha256="1bavlkrd0957lxv3n8wqv83sxddpihrwr91f2sgshwlczksl05kn"; depends=[checkmate data_table lavaan semTools]; }; FCPS = derive2 { name="FCPS"; version="1.3.0"; sha256="0cz04pjhps7grnvx50gnpmhlp4rvl9xx1dnsabn2pg075y5r5bgk"; depends=[DataVisualizations ggplot2 mclust]; }; FCSlib = derive2 { name="FCSlib"; version="1.3.0"; sha256="1191ba6dwpakcdnbcq61zm5xq24isxjnn98nmvk67fpf1ycw70w9"; depends=[bitops fields stringr tiff]; }; - FCVAR = derive2 { name="FCVAR"; version="0.1.2"; sha256="0ci0y3mpwiv234km8fd2qmkfnk0mh8s7vn4ai45pfrm0wwhv3akw"; depends=[fracdist pracma]; }; - FD = derive2 { name="FD"; version="1.0-12"; sha256="0xdpciq14i8rh7v6mw174hip64r7mrzhx7gwri3vp9y7a1380sbi"; depends=[ade4 ape geometry vegan]; }; + FCVAR = derive2 { name="FCVAR"; version="0.1.4"; sha256="0762pkjh0yk96jlpqw4jv0andr0s0ylx14rh1igv9d0nagd237ba"; depends=[fracdist pracma]; }; + FD = derive2 { name="FD"; version="1.0-12.1"; sha256="18i0wcmi2nslifi395ajkkfy3j6dsdbrj4nl5ni6ndnmxifg7d0f"; depends=[ade4 ape geometry vegan]; }; FDRSeg = derive2 { name="FDRSeg"; version="1.0-3"; sha256="0dh6m5vlx664kryh56jzi3zxydjwa5217nhbwn6adp0q5qdh6d8a"; depends=[Rcpp stepR]; }; FDRestimation = derive2 { name="FDRestimation"; version="1.0.1"; sha256="083w50g8n03l0wigywm90xyp8xjxbsbbicv0a5g2wmbdd70m4nay"; depends=[Rdpack]; }; FDRreg = derive2 { name="FDRreg"; version="0.1"; sha256="17hppvyncbmyqpi7sin9qsrgffrnx8xjcla2ra6y0sqzam1145y4"; depends=[fda mosaic Rcpp RcppArmadillo]; }; @@ -1611,7 +1571,7 @@ in with self; { FHDI = derive2 { name="FHDI"; version="1.4.1"; sha256="1n1rbrqdphp0prmkili6rnpxwdb7fgwsgncllr6yxlrkr5rb76pm"; depends=[]; }; FHtest = derive2 { name="FHtest"; version="1.5"; sha256="00mql2r4f5hxhdqf27q3x9s5rz2zzakx2myym97b1w1s7c5znl4q"; depends=[interval KMsurv MASS perm survival]; }; FI = derive2 { name="FI"; version="1.0"; sha256="17qzl8qvxklpqrzsmvw4wq3lyqz3zkidr7ihxc4vdzmmz69pyh2f"; depends=[]; }; - FIESTAutils = derive2 { name="FIESTAutils"; version="1.0.0"; sha256="144q4z6g5lflha3wdizc09lpwr2bgxgpbq4bbmflr2ijrq25zy88"; depends=[data_table DBI hbsae JoSAE mase nlme RColorBrewer Rcpp rgdal RPostgreSQL RSQLite sae sf sp sqldf units xml2]; }; + FIESTAutils = derive2 { name="FIESTAutils"; version="1.1.1"; sha256="0xhaqang465fs0v6ppp6qyzblfnsqzyg4ni49b59k2vchwpscpi7"; depends=[data_table DBI hbsae JoSAE mase nlme RColorBrewer Rcpp rgdal RPostgreSQL RSQLite sae sf sp sqldf units xml2]; }; FILEST = derive2 { name="FILEST"; version="1.1.2"; sha256="0x95in9yad93j8kbxjykz04x756i1c1cq854c220cc0l3rm3npnl"; depends=[KRIS rARPACK]; }; FIT = derive2 { name="FIT"; version="0.0.6"; sha256="1nkjms9cvigc9sjha1krzhd3nmwsfh8pi0f1plf5k8zpb773zzb2"; depends=[gglasso MASS Rcpp RcppEigen XML]; }; FITSio = derive2 { name="FITSio"; version="2.1-6"; sha256="1qch6z9r8h95jijjdwsi81majgacl42ryzlkn0m1wifkly9mjjrb"; depends=[]; }; @@ -1621,10 +1581,9 @@ in with self; { FLAME = derive2 { name="FLAME"; version="2.1.1"; sha256="013kxp6zjw8qzdq3750x109rhbmjn10q32wgxsh7ajiflwhj3f1i"; depends=[glmnet gmp]; }; FLLat = derive2 { name="FLLat"; version="1.2-1"; sha256="0306bpwp2az4x4m5sv88hlh7vs0y5isfby7lxrn2gjnk76gg6mw1"; depends=[gplots]; }; FLR = derive2 { name="FLR"; version="1.0"; sha256="0k50vi73qj7sjps0s6b2hq1cmpa4qr2vwkpd2wv2w1hhhrj8lm0n"; depends=[combinat]; }; - FLSSS = derive2 { name="FLSSS"; version="8.6.6"; sha256="0kw28zmvgdy4zmj2vnrs84n0rg6jvqj3x8f3ihjjkzkwqrqyiia9"; depends=[Rcpp RcppParallel]; }; FLightR = derive2 { name="FLightR"; version="0.5.2"; sha256="0scbz1c3pm40v8h4h5qxckrpg2zixx29g9wwxiq06wlc7vajlh77"; depends=[bit CircStats circular fields ggmap ggplot2 ggsn maptools mgcv nlme RcppArmadillo rgdal rgeos sp truncnorm]; }; FMAdist = derive2 { name="FMAdist"; version="0.1.0"; sha256="0aa4sw93ia6cp386hrq6x448x4w0p6k198rjaqs474j25gqgxrv0"; depends=[EnvStats extraDistr fitdistrplus MASS quadprog STAR]; }; - FMC = derive2 { name="FMC"; version="1.0.0"; sha256="1pfqxx7slgcmw4al7i8hy59f4han6b0b7b5az7yh1mscdnghl9bj"; depends=[minimalRSD]; }; + FMC = derive2 { name="FMC"; version="1.0.1"; sha256="03g3v1nmidgjcb3nxs7gfk9s20c8vnk0hgijsnydvxi5bypw8s8p"; depends=[minimalRSD]; }; FMCCSD = derive2 { name="FMCCSD"; version="1.0"; sha256="0c50km5ba6biq9p3mycxhy00ij2gr6y5zf3q8ycq0g1mbk8ybfb7"; depends=[numDeriv orthopolynom Rcpp RcppArmadillo splines2]; }; FME = derive2 { name="FME"; version="1.3.6.2"; sha256="067ngy94afk1zwavag0zl4cz4q8mn14kxkpzsyiz09qy2zw018k5"; depends=[coda deSolve MASS minpack_lm minqa rootSolve]; }; FMM = derive2 { name="FMM"; version="0.3.1"; sha256="00rjk5lvkcj2ifxgplampqp4427cp68k13wlh7hwjgl2mb2rly23"; depends=[doParallel foreach iterators rlang]; }; @@ -1634,7 +1593,6 @@ in with self; { FMsmsnReg = derive2 { name="FMsmsnReg"; version="1.0"; sha256="0d58n7lz8d6xgzvyznmhw1byshyiiwk8dc462qr18cl51p0lqnkv"; depends=[mvtnorm]; }; FNN = derive2 { name="FNN"; version="1.1.3"; sha256="0cllqlnynm5yaj4r64mqyyfc8phkb38rwssq8k8ikgfgr4jklxny"; depends=[]; }; FOCI = derive2 { name="FOCI"; version="0.1.3"; sha256="0iax5569a0v18j2l52mw26yimx11fqqbxj5q7jgba9jf7ylp410w"; depends=[data_table gmp proxy RANN]; }; - FORTLS = derive2 { name="FORTLS"; version="1.0.6"; sha256="0w6a17n1f9vq7j9ajlqkrbxgajhh4qrj5lwfqfkk9g1h5vsr8xn2"; depends=[dbscan Distance ggvoronoi htmlwidgets lidR moments plotly progress raster Rcpp RcppEigen RCSF scales sp tidyr vroom]; }; FPCA2D = derive2 { name="FPCA2D"; version="1.0"; sha256="18bb90ppd9gd8pg9jxfyfkmlsaqk8w25fgaj9fk18ybm2nhsxqm6"; depends=[corpcor]; }; FPCA3D = derive2 { name="FPCA3D"; version="1.0"; sha256="1hrk9caad2s76dx59clxhia45a85khk1y2ii7955f336x55q34a5"; depends=[]; }; FPDclustering = derive2 { name="FPDclustering"; version="2.1"; sha256="0p5rx3js5sdmdabdplhkl5hgainspj63iz0wgns4jxb4lhs825sa"; depends=[cluster ExPosition GGally ggplot2 klaR MASS mvtnorm rootSolve ThreeWay]; }; @@ -1644,8 +1602,10 @@ in with self; { FRAPO = derive2 { name="FRAPO"; version="0.4-1"; sha256="0mjcrplxr0cyybp5hzzwbq5j03w0f3iiiv1yk7mdqr5gb368dchq"; depends=[cccp Rglpk timeSeries]; }; FRCC = derive2 { name="FRCC"; version="1.0"; sha256="1g1rsdqsvwf7wc16dj16y6r0347j8jsv5l1pxvj1h0579zinaf2b"; depends=[calibrate CCP corpcor MASS]; }; FREEtree = derive2 { name="FREEtree"; version="0.1.0"; sha256="1i2liqbcg993snj5vq341mmafzhn1yrwljvx4f3kyzy0pa59k6rn"; depends=[glmertree MASS pre WGCNA]; }; + FREG = derive2 { name="FREG"; version="1.1"; sha256="1f9ss0aj6w6n0x4np6wi3ynhhcibr5zk54gzbkgpk6q3y7pv0qs1"; depends=[fda]; }; FREQ = derive2 { name="FREQ"; version="1.0"; sha256="01nra30pbnqdd63pa87lcws3hnhhzybcjvx2jqyxjghn6khz47j0"; depends=[]; }; FRESA_CAD = derive2 { name="FRESA.CAD"; version="3.3.1"; sha256="1d8ya1pqy1zc9hxp7s211n0wa3n63jgpxh5ngysbh0dn488l8vgg"; depends=[Hmisc miscTools pROC Rcpp RcppArmadillo stringr]; }; + FRESHD = derive2 { name="FRESHD"; version="1.0"; sha256="0lpggf59dd3kwp2y9p4acvhdmc6i47bwa5lk6d6cp8q0g7sr44rm"; depends=[glamlasso Rcpp RcppArmadillo RcppEigen]; }; FRK = derive2 { name="FRK"; version="2.0.5"; sha256="1khpfyvw2z45jawrbf3c0kf5xgyvrf53xx84j1qfj96q4n76568i"; depends=[digest dplyr ggplot2 ggpubr Hmisc Matrix plyr Rcpp RcppEigen reshape2 scales sp spacetime sparseinv statmod TMB]; }; FSA = derive2 { name="FSA"; version="0.9.3"; sha256="10ax191r71gny976hgxgs0gz2548sjjaq3hqy7xkzbj2mcmjq41w"; depends=[car dunn_test lmtest plotrix withr]; }; FSAdata = derive2 { name="FSAdata"; version="0.3.9"; sha256="1ycllz83lmbd93fdrkj0sjg8bygivp60fv768kk0diamjb16xlmq"; depends=[]; }; @@ -1663,9 +1623,8 @@ in with self; { FWDselect = derive2 { name="FWDselect"; version="2.1.0"; sha256="0w0hkmhcz7h1lixk7p3yffbbalgxwh2lv463vqz361k80sri6wz7"; depends=[cvTools mgcv]; }; FWRGB = derive2 { name="FWRGB"; version="0.1.0"; sha256="0wi1vkb8mmw9f8hzgp8cm6hy9nbglz0x8mllngdamhlvm35gr57d"; depends=[e1071 imager neuralnet]; }; FacPad = derive2 { name="FacPad"; version="3.0"; sha256="0h7knzin0rfk25li127zwjsyz223w7nx959cs328p6b2azhgn59b"; depends=[MASS Rlab]; }; - FactMixtAnalysis = derive2 { name="FactMixtAnalysis"; version="1.0"; sha256="1l4wfp39b7g38vdk6jpd5zq08sjhsg0s71f662aca2rj6l3a2x3r"; depends=[MASS mvtnorm]; }; FactoClass = derive2 { name="FactoClass"; version="1.2.7"; sha256="0hvlr9cw6wfckl8rzl5qqyp0h8rv8gcnyj6x930jq7h44kj0ji7d"; depends=[ade4 ggplot2 ggrepel KernSmooth scatterplot3d xtable]; }; - FactoInvestigate = derive2 { name="FactoInvestigate"; version="1.7"; sha256="0lndh80pmr5zhhh7j9lhxl4j007rak5gh3dwxd1883cy0d6whjs9"; depends=[FactoMineR ggplot2 rmarkdown rrcov]; }; + FactoInvestigate = derive2 { name="FactoInvestigate"; version="1.8"; sha256="1m2005yywdh9ir61sdh10ssp1y26d9xgx9rivvilbk9grc9qyjzg"; depends=[FactoMineR ggplot2 rmarkdown]; }; FactoMineR = derive2 { name="FactoMineR"; version="2.4"; sha256="0lg8n9fxxk46nchnj4pbpqqf4swxfsq7r9jzr36dmd36kb7avqxr"; depends=[car cluster DT ellipse flashClust ggplot2 ggrepel lattice leaps MASS scatterplot3d]; }; FactorAssumptions = derive2 { name="FactorAssumptions"; version="2.0.1"; sha256="0d7dh67r8s0v952palhx9h6bhhlxw9xcjbj7dxsp2hdhwap72s2y"; depends=[MASS psych]; }; FactorCopula = derive2 { name="FactorCopula"; version="0.8"; sha256="1zrla429hmqlnjxkyscwcs58fav65wwyk1h2m4kwzsqf3g6hqnyr"; depends=[abind matlab polycor statmod VineCopula]; }; @@ -1674,7 +1633,6 @@ in with self; { Fahrmeir = derive2 { name="Fahrmeir"; version="2016.5.31"; sha256="16fbc1zb9x9p04bl7y5nd375pha6bd3hfqqchlk1bqxrj4879y5g"; depends=[]; }; FairMclus = derive2 { name="FairMclus"; version="2.2.1"; sha256="0mhccn6yyf35qb856psh3dpiwdf24l3w2lqr643lkn38lhbmyvn8"; depends=[cluster data_table doParallel dplyr foreach irr magrittr rlist tidyr]; }; FamEvent = derive2 { name="FamEvent"; version="2.1"; sha256="1bwi91z8xyb3xj8fwbshgdq7l1pik2dsy6ljzwy1ymd0xz0q7f5a"; depends=[eha kinship2 MASS pracma survival truncnorm]; }; - Familias = derive2 { name="Familias"; version="2.4"; sha256="1k6ig2zfkr1a4s3s85ygixmmsrb5m8vqqab8l5ffkspgjvh4dfz2"; depends=[kinship2 paramlink Rsolnp]; }; FamilyRank = derive2 { name="FamilyRank"; version="1.0"; sha256="0v1b3a6rxbbl7xdy977j02x1ni66879x98vg6ngbaqvh7v9vl82x"; depends=[plyr Rcpp RcppArmadillo]; }; FarmSelect = derive2 { name="FarmSelect"; version="1.0.2"; sha256="174rzv9k0hdcfdkv7bisy70rip2iy0bnj3qa54i00wqwjdglgjdn"; depends=[fBasics ncvreg Rcpp RcppArmadillo]; }; FarmTest = derive2 { name="FarmTest"; version="2.2.0"; sha256="1mr2cscz3ywyq280ifaj4gypxanvvl9s7w33ysmwn952camra2md"; depends=[Rcpp RcppArmadillo]; }; @@ -1687,7 +1645,6 @@ in with self; { FastJM = derive2 { name="FastJM"; version="1.1.2"; sha256="1ip5s8jrgkyrs51i7n0xqv2gicpp4kdizm7h6kff9da675bcv9jr"; depends=[dplyr MASS mvtnorm nlme Rcpp RcppEigen statmod survival]; }; FastKM = derive2 { name="FastKM"; version="1.0"; sha256="0sqxd2pg9y6yn1lnxni32ca3bgbmz04k9z37q9pzgijvf9qvik3f"; depends=[rARPACK]; }; FastKNN = derive2 { name="FastKNN"; version="0.0.1"; sha256="1iz8ybzkvbyqwb00s7cp1zvy9xlmyjid441mf62dq08a0zncnyss"; depends=[assertthat pdist]; }; - FastLZeroSpikeInference = derive2 { name="FastLZeroSpikeInference"; version="2018.12.10"; sha256="0ybpmns7bc1j5xzqjl7734grihmvvpa3h52gixv3h70l0r89d8ys"; depends=[]; }; FastPCS = derive2 { name="FastPCS"; version="0.1.3"; sha256="152fy5hq675n1mjdsi31a77rmi3vylvvbfgywrh62chy5xa1bf34"; depends=[matrixStats Rcpp RcppEigen]; }; FastRCS = derive2 { name="FastRCS"; version="0.0.8"; sha256="11kqd8aii9sy65m5inxiqggyajb41iy6w92zp5wggx7pbg9m6lmy"; depends=[matrixStats Rcpp RcppEigen]; }; FastRWeb = derive2 { name="FastRWeb"; version="1.2-0"; sha256="13w09ic38vzdyyhcdd18as443nbhgbw4baydrlbl7nai0llsk9w9"; depends=[base64enc Cairo]; }; @@ -1720,12 +1677,11 @@ in with self; { FinePop = derive2 { name="FinePop"; version="1.5.1"; sha256="184707yvh2mydx42vxrdgv0n4v2dad4an7c4yvlyb9d7z6h0sw2x"; depends=[]; }; FinePop2 = derive2 { name="FinePop2"; version="0.4"; sha256="1rzsbxbxynn0pl6dlkmsjxiph403ffwlb2brsi8cm4r22jjhcx4i"; depends=[]; }; FisHiCal = derive2 { name="FisHiCal"; version="1.1"; sha256="1dds629jlja3vw2l010n1334yh3z10nijqksr0q98ckd2yrwg2rf"; depends=[igraph Rcpp RcppArmadillo]; }; - FisPro = derive2 { name="FisPro"; version="1.1"; sha256="0qdig7958vavsxj64gp336b9ayhscrcxmnjxhrb4m4vyg3f8c3sn"; depends=[BH Rcpp Rdpack]; }; + FisPro = derive2 { name="FisPro"; version="1.1.1"; sha256="0h3n64pw262arcl5wvz8ipwgmgxqn4vqhy21h9lzqpnw03qw5shl"; depends=[BH Rcpp Rdpack]; }; Fiscore = derive2 { name="Fiscore"; version="0.1.3"; sha256="0mxiip7gwhm9ck5a7yn12shk8jwjmq34j99n3shzhh6h482kqs94"; depends=[bio3d dplyr ggplot2 knitr lattice mclust plotly rmarkdown stringr]; }; FishPhyloMaker = derive2 { name="FishPhyloMaker"; version="0.2.0"; sha256="1q1kh999nx0hmgvnzxls95y7q501n0pqic0ylvrwq25ba2qwmcsg"; depends=[ape fishtree geiger knitr phytools progress rfishbase rmarkdown]; }; FishResp = derive2 { name="FishResp"; version="1.1.0"; sha256="12b0akpx8xjarhjrn47x930vqh3kswm784xd1k14fx6bxjjy8ais"; depends=[chron lattice mclust respirometry rMR]; }; FisherEM = derive2 { name="FisherEM"; version="1.6"; sha256="18xn0hnj5diq7falrjl04abqyyrvyzaikb9l6wh7hfhflhsd382c"; depends=[elasticnet ellipse ggplot2 MASS plyr]; }; - FitAR = derive2 { name="FitAR"; version="1.94"; sha256="1mkk3kvfq4v0pdabnhbwrk31ji2mv2v6ns16xsvvr1qyg2fnx6hq"; depends=[bestglm lattice leaps ltsa]; }; FitUltD = derive2 { name="FitUltD"; version="3.1.0"; sha256="17fj211riybq71k63wjfv2ndc2h46ay5svrac2v5i3b92cb9hkbv"; depends=[ADGofTest assertthat cowplot fitdistrplus ggplot2 MASS mclust purrr]; }; FixSeqMTP = derive2 { name="FixSeqMTP"; version="0.1.2"; sha256="0v1cwq8gapgandm7wiw8p6av6qigydlpmwi6w02p1y7f0hf5ifnp"; depends=[]; }; FixedPoint = derive2 { name="FixedPoint"; version="0.6.2"; sha256="1jgqc7m3cvyvxlpkvcqqyfmjl8harsb4kl7msk3qd8mn4qjvvyms"; depends=[MASS]; }; @@ -1735,7 +1691,7 @@ in with self; { FlexParamCurve = derive2 { name="FlexParamCurve"; version="1.5-5"; sha256="1404cn3bhcdr3mjhpr072zcyl0wnksarsg2sry5d1scsmrn4xq83"; depends=[nlme]; }; FlexReg = derive2 { name="FlexReg"; version="1.1"; sha256="0p52qszn5vvci57f4jxynm1kiwdd105cg096ijg6w481v24a0qb3"; depends=[bayesplot BH faraway Formula ggplot2 loo Rcpp RcppEigen rstan rstantools StanHeaders]; }; FlexScan = derive2 { name="FlexScan"; version="0.2.2"; sha256="1887r2nxpv89rizzj0j1p5shfmbyhchjzaszbxd7mlswqkqazb53"; depends=[smerc sp spatialreg spdep]; }; - FlickrAPI = derive2 { name="FlickrAPI"; version="0.1.0.0"; sha256="0bbk7ac4s3gbcjhfg3yz06pxjid3hpd0mqzxzlj5sghn95f479h9"; depends=[jsonlite magrittr RCurl stringr]; }; + FloodFreqPlot = derive2 { name="FloodFreqPlot"; version="0.1.0"; sha256="19jg0i4fd7x401gwfkirp8mi3i4kzqxk0nla6wvfcsbmy5qsf15q"; depends=[]; }; FlowRegEnvCost = derive2 { name="FlowRegEnvCost"; version="0.1.1"; sha256="0lw4kv4z0s23jy11y53rxxh7zxa7vajxrcnjgxd74xxs64vjlj88"; depends=[zoo]; }; FlowScreen = derive2 { name="FlowScreen"; version="1.2.6"; sha256="1s9xyrvfsgrl2zxm2an5qj3rs1qx7v7j8wc83jzl28pkwa5xr351"; depends=[changepoint evir zyp]; }; FluMoDL = derive2 { name="FluMoDL"; version="0.0.3"; sha256="0vp3w6hpph6svz8940w9yk9c5iv4n9mj94f9si1ks0xjbi948rqd"; depends=[dlnm mvmeta tsModel]; }; @@ -1753,11 +1709,11 @@ in with self; { ForestTools = derive2 { name="ForestTools"; version="0.2.5"; sha256="0v6m6br54cj0a218ddgkhmqr6ldk29g03pddyqh9krihq37wnjsa"; depends=[APfun doParallel foreach imager plyr progress raster Rcpp rgeos sp]; }; Formula = derive2 { name="Formula"; version="1.2-4"; sha256="1bsw282i5m8rlirbhz7hqvf25zbxschk7yrp152whbzdnmry6w6b"; depends=[]; }; ForwardSearch = derive2 { name="ForwardSearch"; version="1.0"; sha256="0yd47832piqxzjxgl7bc8pn0c8f7vbgsm9z6894rzyi615kjl70b"; depends=[robustbase]; }; - FossilSim = derive2 { name="FossilSim"; version="2.2.0"; sha256="0q3p2linl30h136gyygl2pg0gs47s6lmb39llbaq7cpq52saxaks"; depends=[ape TreeSim]; }; + FossilSim = derive2 { name="FossilSim"; version="2.3.0"; sha256="1vp2khvc0cs23c1ci8264pvm6hq25l77lc7wyjdm60ybd7rvc4ia"; depends=[ape TreeSim]; }; FourScores = derive2 { name="FourScores"; version="1.5.1"; sha256="1la9d1hfcmi0zg58yl0a7nj36giagh0fwrc7wxyqdq0c7zf1hfzq"; depends=[]; }; FourWayHMM = derive2 { name="FourWayHMM"; version="1.0.0"; sha256="0zi42d214dq70ypgj8g57fwjbqfih4z0956njpj2739aqsnjq5v4"; depends=[data_table doSNOW foreach LaplacesDemon mclust snow tensor tidyr withr]; }; FourgameteP = derive2 { name="FourgameteP"; version="0.1.0"; sha256="15yn47737768fkjjv8ykc9lw7x58pq44k90d9d4c9hp20zw5f3by"; depends=[]; }; - FrF2 = derive2 { name="FrF2"; version="2.2-2"; sha256="048awbsyzpjmr0kmz3k5yi5vksa9iiffabp6q8xsww097vcngxzb"; depends=[DoE_base igraph scatterplot3d sfsmisc]; }; + FrF2 = derive2 { name="FrF2"; version="2.2-3"; sha256="1ra7gckbr786fcvvf3sn0n5yajblqfs1xbwcph5v0f6vk2lh883s"; depends=[DoE_base igraph scatterplot3d sfsmisc]; }; FrF2_catlg128 = derive2 { name="FrF2.catlg128"; version="1.2-2"; sha256="0r5v3922gsrsyrdin5dwdygnj9i23gwa67p7kll6ac6xxp8gig4w"; depends=[FrF2]; }; FracKrigingR = derive2 { name="FracKrigingR"; version="1.0.0"; sha256="08ai69wnpa4l1gpmgrs9c9ad9h56h0x55v3gnbci30yxkivbnvxw"; depends=[clusterGeneration psych]; }; FractalParameterEstimation = derive2 { name="FractalParameterEstimation"; version="1.1.2"; sha256="16xm2g723dm1n1h6as6yvy92sigzhj31f269g5rrzqjcd4d5m8an"; depends=[]; }; @@ -1772,7 +1728,7 @@ in with self; { FuncMap = derive2 { name="FuncMap"; version="1.0.10"; sha256="0iaay6qz9a2s77xjfpp7wm37y7xwnvmlw6s5k5riccmqzc6dcjs7"; depends=[mvbutils]; }; FuncNN = derive2 { name="FuncNN"; version="1.0"; sha256="0kcr7c54igzi0imp8w9a0mnrqaa2qcls9777scsjz5sbcxdy3if3"; depends=[caret doParallel fda fda_usc flux foreach ggplot2 ggpubr keras Matrix pbapply reshape2 tensorflow]; }; FunnelPlotR = derive2 { name="FunnelPlotR"; version="0.4.1"; sha256="0cfvg47fwxwjhgxd5if81jg9nkj42i1yvykqd7g01n7ymirp7kf6"; depends=[dplyr ggplot2 ggrepel scales]; }; - FusionLearn = derive2 { name="FusionLearn"; version="0.1.1"; sha256="0n8bj7k2r2vf0v2nsw31k75hzkqj5l4hyfnmvid102hx9cl8hv3y"; depends=[]; }; + FusionLearn = derive2 { name="FusionLearn"; version="0.2.1"; sha256="09mwllnp7sdk7x97s3kv2lka6smpf54svmxw5hv6zlh1hvjnyg50"; depends=[]; }; Fuzzy_p_value = derive2 { name="Fuzzy.p.value"; version="1.1"; sha256="13h6armh9g57zqxyjqk6mq81jlfqxqrg2sb5p9rrhslka5m01zis"; depends=[FuzzyNumbers]; }; FuzzyAHP = derive2 { name="FuzzyAHP"; version="0.9.5"; sha256="02sx32vlvnr0fzw8rf0f6hiikqn7xp1ibpqzxhxwv8yij2qkiyci"; depends=[MASS]; }; FuzzyLP = derive2 { name="FuzzyLP"; version="0.1-6"; sha256="0k1cqyswhzp31dq91xigirkqhw3imkx68n4vasyvrgq6fm97dl1n"; depends=[FuzzyNumbers ROI ROI_plugin_glpk]; }; @@ -1786,7 +1742,6 @@ in with self; { FuzzySTs = derive2 { name="FuzzySTs"; version="0.2"; sha256="0zs1pyn9apysspxa0glqc96h6npmvvhiqvqpcm0brslz0b6xnilp"; depends=[FuzzyNumbers polynom]; }; FuzzyStatProb = derive2 { name="FuzzyStatProb"; version="2.0.4"; sha256="1jpqb8xczi1d4g306vrwpi02f9h59aki1pgnckvfmiclr306prpb"; depends=[DEoptim FuzzyNumbers MultinomialCI]; }; FuzzyStatTra = derive2 { name="FuzzyStatTra"; version="1.0"; sha256="1ijrlnlmq9d5ahgrpzba6kzkaq1zq59zqdgcizybsf9alsswcm00"; depends=[]; }; - FuzzyToolkitUoN = derive2 { name="FuzzyToolkitUoN"; version="1.0"; sha256="104s45mmlam67vwpshhpns2mgwvmhnbj8w1918jyk2r5mqibwz06"; depends=[]; }; G1DBN = derive2 { name="G1DBN"; version="3.1.1"; sha256="015rw3bpz32a8254janddgg1ip947qgcvmiwx5r3v7g8n854bwxn"; depends=[igraph MASS]; }; G2Sd = derive2 { name="G2Sd"; version="2.1.5"; sha256="165i6x2k56vwhk5p2p5m9vjmp9flblsapjdlz7nw9b719l6xz5zk"; depends=[ggplot2 reshape2 rJava shiny xlsx xlsxjars]; }; GA = derive2 { name="GA"; version="3.2.2"; sha256="135z03lnbj44jihnk6dii5a684jmc666ncpdwyyi910vl4sccib2"; depends=[cli crayon foreach iterators Rcpp RcppArmadillo]; }; @@ -1821,6 +1776,7 @@ in with self; { GDAtools = derive2 { name="GDAtools"; version="1.7.2"; sha256="0rqrc9andckh4nf8s87gwkpw2kgc2jsynsvsy1xlnvfp753d4dxp"; depends=[FactoMineR GGally ggplot2 ggrepel MASS nleqslv nnet RColorBrewer rlang wdm]; }; GDINA = derive2 { name="GDINA"; version="2.8.8"; sha256="1slq1npsq8s8aghnrpm6vvc6kxj4svz0kr2x0akblndrcr25wxjr"; depends=[alabama ggplot2 MASS numDeriv Rcpp RcppArmadillo Rsolnp shiny shinydashboard]; }; GDPuc = derive2 { name="GDPuc"; version="0.9.0"; sha256="02rd1a5nj8gd8daclr2772pw90r8q042mx25gxsxykfsq75snfni"; depends=[cli crayon dplyr glue lifecycle magrittr rlang tibble tidyselect withr]; }; + GE = derive2 { name="GE"; version="0.3.0"; sha256="1xm45q5dkniacbd47cnnip68g3iflrdxqhqn9hwklmlb8wwnr9rv"; depends=[CGE data_tree DiagrammeR]; }; GEEaSPU = derive2 { name="GEEaSPU"; version="1.0.2"; sha256="02pwjqd94kranc1f69bx9rzk27kchavhvhl9fygjhrr40nwq3pbg"; depends=[gee Rcpp RcppArmadillo]; }; GEEmediate = derive2 { name="GEEmediate"; version="1.1.3"; sha256="1xprkpjp1pkq4ci1n32d3yy80hx3r4xf2j7f6hv7dvsn4cvdp417"; depends=[gee]; }; GEInfo = derive2 { name="GEInfo"; version="1.0"; sha256="08ha9w3c64x9ib2fbh4djbhg7y6lykibx93mbm7i3gdvpajqk0jx"; depends=[dplyr glmnet MASS pheatmap rvest]; }; @@ -1832,12 +1788,9 @@ in with self; { GENMETA = derive2 { name="GENMETA"; version="0.1"; sha256="1mxwqnbg5bvx1qg62xcd62dl81k11l64yckhl3v854asnaczq3pp"; depends=[magic MASS Matrix]; }; GEOmap = derive2 { name="GEOmap"; version="2.4-4"; sha256="0wk2v0fwcwcm59k711fg829h2w58wkd36im4mg974iai6mqif7qh"; depends=[fields MBA RPMG splancs]; }; GESE = derive2 { name="GESE"; version="2.0.1"; sha256="0h3s2sbnv5wilr2mj6bnl2892p16pxrs341gg6jql1a540p669sk"; depends=[kinship2]; }; - GESTr = derive2 { name="GESTr"; version="0.1"; sha256="1q12l2vcq6bcyybnknrmfbm6rpzcmxgq2vyj33xwhkmm9g2ii9k6"; depends=[gtools mclust]; }; GET = derive2 { name="GET"; version="0.2-5"; sha256="1mh8afgzz4yq4hpx0f0fiw1j6jmaq5b24ja2d5krvm5s83gi356r"; depends=[cluster ggplot2 gridExtra viridisLite]; }; GEVACO = derive2 { name="GEVACO"; version="1.0.1"; sha256="0zkan4w96g3qc1hgla90mh32b55bk58gax095p4nxrfi46f8w3rf"; depends=[nlme RLRsim]; }; GEVcdn = derive2 { name="GEVcdn"; version="1.1.6-2"; sha256="0vmm9fhyrk5m0zwy7fpq5j9zinws0gn2saf4j9plqc9gj1gphjn0"; depends=[]; }; - GEint = derive2 { name="GEint"; version="0.1.5"; sha256="179gpq4qjhgx1fhyjdb80rf2ip80zhhfyn8xjgwq1a425163q1y7"; depends=[bindata geepack mvtnorm nleqslv pracma rje speedglm]; }; - GExMap = derive2 { name="GExMap"; version="1.1.3"; sha256="1a6i2z9ndgia4v96nkr77cjqnbgxigqbqlibg82gwa0a6pl7r7nz"; depends=[Biobase multtest]; }; GFA = derive2 { name="GFA"; version="1.0.3"; sha256="10sivsqxliwcrp0ay3n2my28zki6f8vpv8i9lbld8qinx1iv2mq3"; depends=[]; }; GFD = derive2 { name="GFD"; version="0.3.3"; sha256="1d40fwk367ww544z25jwlx2kdm1gv7y6ijl8vnpi198n7k1hdgpl"; depends=[magic MASS Matrix plotrix plyr shiny shinyjs shinythemes shinyWidgets tippy]; }; GFDsurv = derive2 { name="GFDsurv"; version="0.1.0"; sha256="1kyazvyz9rgjklh63aq70f3jsv1fpy3ws5wbg4vdah52p8fk35j9"; depends=[gridExtra magic MASS plyr shiny shinyjs shinythemes survival survminer tippy]; }; @@ -1851,22 +1804,21 @@ in with self; { GGMncv = derive2 { name="GGMncv"; version="2.1.1"; sha256="0lih9dyb5aqrawhiy2vhv63b132hhzq6zq0x6rbrhy8kbkldhigr"; depends=[GGally ggplot2 glassoFast MASS mathjaxr network numDeriv pbapply Rcpp RcppArmadillo Rdpack reshape sna]; }; GGMnonreg = derive2 { name="GGMnonreg"; version="1.0.0"; sha256="1bhqk172ddc7xq1hqj1i6q8np6jvmf2xypvd8kp3w1bcsafsbms8"; depends=[bestglm corpcor doParallel foreach GGally GGMncv ggplot2 MASS Matrix network poibin psych Rdpack sna]; }; GGMridge = derive2 { name="GGMridge"; version="1.1"; sha256="0zbfvvp7l836m118m8nmdvw1w7xq6d3b7qirskjsq1dkk23j41hs"; depends=[MASS mvtnorm]; }; - GGMselect = derive2 { name="GGMselect"; version="0.1-12.4"; sha256="0p9djnkclnk64bcrd66agi2gw2j3bqvqhamfm0h59b810kh50kbn"; depends=[gtools lars mvtnorm]; }; + GGMselect = derive2 { name="GGMselect"; version="0.1-12.5"; sha256="1lg42rra92f0n7w6mgg6sfhk9qk06j7bf56gifff5spjv9mmj6zc"; depends=[gtools lars mvtnorm]; }; GGRidge = derive2 { name="GGRidge"; version="0.1.0"; sha256="1q5lgnzbhczfylkj2p07r2a088i0d2xgmggilwlg6b0gc9qg7xf8"; depends=[CVglasso graph gRbase MASS]; }; GGUM = derive2 { name="GGUM"; version="0.4-3"; sha256="1r4ijkc5xrlp2sq4jnhcrzzmkzilc4lbz3q5zc0kgcz348hf1a7w"; depends=[abind psych Rdpack viridis xlsx]; }; GGally = derive2 { name="GGally"; version="2.1.2"; sha256="1r98zgh2grn8330cf26r1c20gl131zm778szvn5wj6q6pwv2yd9h"; depends=[dplyr forcats ggplot2 gtable lifecycle plyr progress RColorBrewer reshape rlang scales tidyr]; }; GHS = derive2 { name="GHS"; version="0.1"; sha256="1khjfy62a67r59s2rax9mmnqy5xnnwhbydzhqwwmyspl48mxycdj"; depends=[MASS]; }; GIC = derive2 { name="GIC"; version="1.0.0"; sha256="0wjrv5rpzcyng0vvpr59l148lxzqnqq4c045fw2x9ynffyb71h99"; depends=[cluster ggplot2 randomForest]; }; GIFTr = derive2 { name="GIFTr"; version="0.1.0"; sha256="101vr2qasky8hnxp5i3lhlnymwzciypqwvhpl6mrr0r0czgpcz2f"; depends=[glue stringr]; }; - GIGrvg = derive2 { name="GIGrvg"; version="0.5"; sha256="0mx4n4kf34343yiww80fw5yy0x624xsj71n8fr4dm0a2338pxq8v"; depends=[]; }; + GIGrvg = derive2 { name="GIGrvg"; version="0.7"; sha256="1mjm84sdkpavqcc30yv8zvdb4650q1jhd5sgyykw30flj6y72sxr"; depends=[]; }; GISTools = derive2 { name="GISTools"; version="0.7-4"; sha256="06alb5d2k4qj344i9cpgm3lz9m68rkmjqfx5k2hzn7z458xjrlxs"; depends=[maptools MASS RColorBrewer rgeos sp]; }; GInSARCorW = derive2 { name="GInSARCorW"; version="1.15.6"; sha256="0rpq8ng9skxg6qzhainsc9jkznql6glq65a1bdbrkc6pwx3pc7lc"; depends=[circular raster rgdal rgeos sp]; }; GIplot = derive2 { name="GIplot"; version="0.1.0"; sha256="1asyd4f76xg84jnwa8kxcw5z6ch3kpy0p7yigmyga94908gylpxj"; depends=[]; }; GJRM = derive2 { name="GJRM"; version="0.2-6"; sha256="0yb7bwxj1gar9zj61vbfls5vzyj23bdjrikbx6g2m2c31a8f3azq"; depends=[copula distrEx evd gamlss_dist ggplot2 ismev magic matrixStats mgcv mnormt numDeriv psych Rmpfr scam survey survival trust VGAM VineCopula]; }; GK2011 = derive2 { name="GK2011"; version="0.1.3"; sha256="13vafhbgcsj485f12qv962y07v3hil3pla51vkl2b030amzy86jv"; depends=[]; }; - GLDEX = derive2 { name="GLDEX"; version="2.0.0.7"; sha256="1w5ahwbnz9xsn3rdxzcxxvc6m5cgq46nln3i5v8vp4imrs8aafb3"; depends=[cluster]; }; - GLDreg = derive2 { name="GLDreg"; version="1.0.7"; sha256="1wjrr4x1k0fz8nx9idb4ysamldypriiypj96b5v028lx38jwsk3l"; depends=[ddst GLDEX]; }; - GLIDE = derive2 { name="GLIDE"; version="1.0.4"; sha256="0270dsilmmm7llk1dchy4bvps4jbb5zkb1kg8ndgsbl12gsmwx3z"; depends=[doParallel foreach MASS]; }; + GLDEX = derive2 { name="GLDEX"; version="2.0.0.8"; sha256="1vib9byws571q30qq81q5bcklj3rrcqlz0f9yzjfrzyh5y5bhcpc"; depends=[cluster spacefillr]; }; + GLDreg = derive2 { name="GLDreg"; version="1.1.0"; sha256="1ls9jfk3vp5r1d90vzkni0fcxlkn70i2pszw1pxnscxxhz112dq0"; depends=[ddst GLDEX]; }; GLMMRR = derive2 { name="GLMMRR"; version="0.5.0"; sha256="072zwi1rs6d84iszn09v5g19bkpla19nfqk4pq40ad8368zkbhcm"; depends=[lattice lme4 RColorBrewer]; }; GLMMadaptive = derive2 { name="GLMMadaptive"; version="0.8-5"; sha256="1vzqyw2wkhjc0gj25pf9hbc8lii8bjv10391b9g0qv6w3bpgsnkn"; depends=[MASS matrixStats nlme]; }; GLMaSPU = derive2 { name="GLMaSPU"; version="1.0"; sha256="0zx2bza5v5cfp9v7hf42s57522b6prawcwl77aa3kvjcnb0ish6g"; depends=[MASS mnormt mvtnorm Rcpp RcppArmadillo]; }; @@ -1890,25 +1842,24 @@ in with self; { GNE = derive2 { name="GNE"; version="0.99-3"; sha256="11pk9w4xj27dyfn05bna99xqdb89wp0ljl798d5dyk5fcnhh7217"; depends=[alabama BB nleqslv SQUAREM]; }; GNRS = derive2 { name="GNRS"; version="0.3.4"; sha256="0aq6rq5b3jq9yj8hhyxjin38f2008qsix4zm20nyhqx0k0hizql1"; depends=[httr jsonlite RCurl]; }; GNSSseg = derive2 { name="GNSSseg"; version="6.0"; sha256="1zkj98xh63wfyyygg2ahq3m54xlvi3x9sy0rhcn2dlfvbxaxfl4k"; depends=[capushe robustbase]; }; - GOCompare = derive2 { name="GOCompare"; version="1.0.0"; sha256="0ijqscnhkbwb8x3976pw9s9g85sb0a99rbvyxxi2sd34dl21f3bb"; depends=[ape ggplot2 ggrepel igraph stringr vegan]; }; + GOCompare = derive2 { name="GOCompare"; version="1.0.1"; sha256="0ssppp61ssirkcz9wni48n9jm6yv89lzxkgb90njslhb3aa07pbh"; depends=[ape ggplot2 ggrepel igraph stringr vegan]; }; GOFShiny = derive2 { name="GOFShiny"; version="0.1.0"; sha256="04m08d9w8qqbql86c18qpnwym7agry8wspfwrnbbyp52h2pn2gxb"; depends=[rhandsontable rmarkdown shiny]; }; GOGANPA = derive2 { name="GOGANPA"; version="1.0"; sha256="1xbir21zvr5hv2y6nndzpsrpmnr7glrc7y6xgcyb856wx46ajan9"; depends=[GANPA WGCNA]; }; GORCure = derive2 { name="GORCure"; version="2.0"; sha256="1hazin0q74hf16azxa5h08kfj7g1079q77n2fn4fahpfxb8hmvwm"; depends=[ICsurv MASS pracma survival]; }; GOplot = derive2 { name="GOplot"; version="1.0.2"; sha256="1y8dv0kbzpr9za91njw0x233vx5d13vqml9hmpddcyi9s6va5nix"; depends=[ggdendro ggplot2 gridExtra RColorBrewer]; }; - GOxploreR = derive2 { name="GOxploreR"; version="1.2.5"; sha256="00ymwl76hwab1iic0g08zrwx76bfc7myks3nivjim1zxw137l144"; depends=[annotate biomaRt dplyr ggplot2 ggraph GO_db gontr igraph network]; }; - GPArotation = derive2 { name="GPArotation"; version="2014.11-1"; sha256="15jh5qqqwx47ara6glilzha87rnih0hs5fsz0jjqwv6wr1gw26rm"; depends=[]; }; + GOxploreR = derive2 { name="GOxploreR"; version="1.2.6"; sha256="1s2f0ns09vvk6q7fd9fgdw7mcr7qib8mvia1xp9dw4rnq0i6ca1k"; depends=[annotate biomaRt dplyr ggplot2 ggraph GO_db gontr igraph network]; }; + GPArotation = derive2 { name="GPArotation"; version="2022.4-1"; sha256="0952kn6v9f54hnrp9055gv7nfj9llk8qhbjgzgngp4f0vkf7w7i3"; depends=[]; }; GPBayes = derive2 { name="GPBayes"; version="0.1.0-3"; sha256="0zihn6489xk5ckah6ax5dmzqsdwhpdfwm1zv8ihrrhk93z5fgzar"; depends=[Rcpp RcppEigen RcppProgress]; }; - GPCMlasso = derive2 { name="GPCMlasso"; version="0.1-5"; sha256="0v4n8m3pcqxjyvli2wag3frzbqxpk9bjl8zkyz6sq2cwypv5wvyv"; depends=[caret cubature ltm mirt mvtnorm Rcpp RcppArmadillo statmod TeachingDemos]; }; - GPFDA = derive2 { name="GPFDA"; version="3.1.1"; sha256="1yivqyk8wlrpfxpnqdjkyzbbykfpmk5qg7cy6kxv469fhadccybc"; depends=[fda fda_usc fields interp mgcv Rcpp RcppArmadillo]; }; + GPCMlasso = derive2 { name="GPCMlasso"; version="0.1-6"; sha256="1vhlpsv86z4vz441n3jaincqizhvslc1c9zd3gah4swmqphlpdqz"; depends=[caret cubature ltm mirt mvtnorm Rcpp RcppArmadillo statmod TeachingDemos]; }; + GPFDA = derive2 { name="GPFDA"; version="3.1.2"; sha256="18dcban1j554d1034rgrsb2m26a7lw09sb3yhym4a9wb5nr80jp0"; depends=[fda fda_usc fields interp mgcv Rcpp RcppArmadillo]; }; GPGame = derive2 { name="GPGame"; version="1.2.0"; sha256="1xxilr1ify9ip3vs000jawxplcbf1vqli40frhnwwjqf01kj8jq5"; depends=[DiceDesign DiceKriging GPareto KrigInv MASS matrixStats mnormt mvtnorm Rcpp]; }; GPIC = derive2 { name="GPIC"; version="0.1.0"; sha256="1v44hkzf3wh09j5pcfmsc8h5jzmqa501bwkmdwwjb7pz64976r23"; depends=[]; }; GPL2025 = derive2 { name="GPL2025"; version="1.0.1"; sha256="0af42g3v91fbcmla2yq98v8rd4ifaznb1xvw7ny41r3843d8appc"; depends=[dplyr]; }; - GPLTR = derive2 { name="GPLTR"; version="1.2"; sha256="0b4s090jlp2qpqqr0b1ifwyf2fal156y7vg9mjkw53y623ms5pix"; depends=[rpart]; }; + GPLTR = derive2 { name="GPLTR"; version="1.3"; sha256="0kih4iqmcsw26y442rvpydqiyvhsgfqb7l1nlllk8hbfv6lwsbzp"; depends=[rpart]; }; GPM = derive2 { name="GPM"; version="3.0.1"; sha256="01vd68w5pnwhng83x5i0k9c5fhsn9siyzzndkvkmpis4mjm42sgv"; depends=[doParallel foreach iterators lattice lhs pracma randtoolbox Rcpp RcppArmadillo]; }; GPP = derive2 { name="GPP"; version="0.1"; sha256="1qryza8mamwzwqiy31drf176w192ksw34kpsa0wc8gsp3ylkm2f9"; depends=[rstan]; }; GPRMortality = derive2 { name="GPRMortality"; version="0.1.0"; sha256="0k5pfyl7r5vsac927aqx19lz93vyk5l3ydqkazn2hwwaw1lh2wav"; depends=[rstan]; }; GPSCDF = derive2 { name="GPSCDF"; version="0.1.1"; sha256="1l50a6p81lykiqlqiwb6kix5s6wzwdi8vddqhl418dlwlsh83ybf"; depends=[dplyr MASS nbpMatching nnet survival]; }; - GPSeqClus = derive2 { name="GPSeqClus"; version="1.2.0"; sha256="1vqbbw6kcqpq6c29yanx3j1ns9x2xr7vvv5fzljw1yswqbfrny7c"; depends=[geosphere htmlwidgets leaflet leaflet_extras plotKML plyr purrr rgdal sp spacetime suncalc]; }; GPareto = derive2 { name="GPareto"; version="1.1.6"; sha256="0iss4827b96dcvhlyl6ajgvns5n5m854myx1qsb53vhq48ck93z2"; depends=[DiceDesign DiceKriging emoa KrigInv ks MASS pbivnorm pso randtoolbox Rcpp rgenoud rgl]; }; GPfit = derive2 { name="GPfit"; version="1.0-8"; sha256="05mpiyi2vxv0wqp422n1mnxa8msc4daq40cwpnpngbcwqhlgqkby"; depends=[lattice lhs]; }; GPoM = derive2 { name="GPoM"; version="1.3"; sha256="1c870dfbpswx78n4s1v6zy0l1qknrs9335af0z01v1miyrmi95gd"; depends=[deSolve float rgl]; }; @@ -1923,20 +1874,18 @@ in with self; { GREMLINS = derive2 { name="GREMLINS"; version="0.2.0"; sha256="0wdqikz6k5d2cxcb347lhy7rj54blgf1m4sjv64zd4nx6c4r0ai8"; depends=[aricode blockmodels igraph mclust pbmcapply R6]; }; GRNNs = derive2 { name="GRNNs"; version="0.1.0"; sha256="1c36km6g4fcsvpirlh88fl3zq9pdpdyfilahfx949salj0gnqsn6"; depends=[cvTools rdist scales vegan]; }; GROAN = derive2 { name="GROAN"; version="1.2.1"; sha256="07419rpd6492gwzn3lgxl37hdfama7wpzni1gj7dy8bvhn8l1m2a"; depends=[plyr rrBLUP]; }; - GRPtests = derive2 { name="GRPtests"; version="0.1.2"; sha256="12w0vskf1n31zspk3vjgdlhrjwpsysvwwr0l0vm57j6faqc31i3s"; depends=[glmnet MASS randomForest ranger RPtests]; }; GRS_test = derive2 { name="GRS.test"; version="1.1"; sha256="1ap9453rj5zan6c3ix7jb1qxhxh42bfv295dgqbgjpdygjdlbm6n"; depends=[]; }; GRTo = derive2 { name="GRTo"; version="1.3"; sha256="1xkcx2agvrpfnmplgaqx70vz303v8rhwnxdyr4hmdlf4h92lbv8i"; depends=[bootstrap]; }; GSA = derive2 { name="GSA"; version="1.03.2"; sha256="1f1mrxxdbdlnibgav6nsvbpniz2x3km2svc0hf43spb4zicn0z8p"; depends=[]; }; GSA_UN = derive2 { name="GSA.UN"; version="1.0.0"; sha256="1jj9scv9x32zb24114a4sa43xvjmf3gmq8lnfablldjn7p7yx9cv"; depends=[e1071]; }; GSAQ = derive2 { name="GSAQ"; version="1.0"; sha256="1p1rab2dlh4h9bfg464nhx708p7kc4q01ifccdh5756lq1qh2kzv"; depends=[]; }; GSAfisherCombined = derive2 { name="GSAfisherCombined"; version="1.0"; sha256="1xhq5nc3kbz3ml9qkdxm6m0c65fybabfhgqlwii2105jl0ll7qy5"; depends=[]; }; - GSAgm = derive2 { name="GSAgm"; version="1.0"; sha256="18bhk67rpss6gg1ncaj0nrz0wbfxv7kvy1cxria083vi60z0vwbb"; depends=[edgeR survival]; }; GSDA = derive2 { name="GSDA"; version="1.0"; sha256="1knzibpazyl0mp3c34hak634q4fb5cp250skkwgba92hj7hfhwvq"; depends=[msigdbr]; }; GSE = derive2 { name="GSE"; version="4.2"; sha256="0vrxn6j5brhwd38zqnr6m3in3hp1xfs1mfhps9qsj20d4w8d1rf9"; depends=[cellWise ggplot2 MASS Rcpp RcppArmadillo robustbase rrcov]; }; GSED = derive2 { name="GSED"; version="2.5"; sha256="0hz7rn0j62gy7bv67dxqpfdq86zv3yqhl9pwafcism94636h8vrj"; depends=[memoise R_utils rootSolve survival]; }; GSM = derive2 { name="GSM"; version="1.3.2"; sha256="04xjs9w4gaszwzxmsr7657ry2ywa9pvpwpczpvinxi8vpj347jbb"; depends=[gtools]; }; GSMX = derive2 { name="GSMX"; version="1.3"; sha256="1n1d7rixj14ari46snsmi48qfmy00ihmzvayk3hkrp2d2d0xi2gh"; depends=[MASS]; }; - GSODR = derive2 { name="GSODR"; version="3.1.4"; sha256="1j2qb3vzh8q461pw8zwm893nzj30gj42nqr3rdj319j43ckw8nk1"; depends=[countrycode curl data_table httr R_utils]; }; + GSODR = derive2 { name="GSODR"; version="3.1.5"; sha256="0kc2irh40hd5y4rnns0g122w18pyajqxxk2knvx2jzkxf10j2s1p"; depends=[countrycode curl data_table httr R_utils]; }; GSSE = derive2 { name="GSSE"; version="0.1"; sha256="034mmxa6kjq5kgikhb5q75viagz5ck9irrjbxm26zq9099qxm13b"; depends=[Iso zoo]; }; GSelection = derive2 { name="GSelection"; version="0.1.0"; sha256="052vh1haxlzbh3c5i24nrwphapik1y8ribmh6q4axd447ggc0ff9"; depends=[gdata penalized SAM]; }; GSparO = derive2 { name="GSparO"; version="1.0"; sha256="0xna2crxqwy8fj0s79rxbdcaz9x912rp1vdwqv1557fsnmfv2yf0"; depends=[ggplot2 ThreeWay]; }; @@ -1950,9 +1899,8 @@ in with self; { GWASExactHW = derive2 { name="GWASExactHW"; version="1.01"; sha256="19qmk8h7kxmn9kzw0x4xns5p3qqz27xkqq4q6zmh4jzizd0fsl78"; depends=[]; }; GWASbyCluster = derive2 { name="GWASbyCluster"; version="0.1.7"; sha256="0ivlkxbh8m23vbnjfmhk0vfczd5b8lzy9w4gm1m6jpvdm40kn70x"; depends=[Biobase limma rootSolve snpStats]; }; GWASinlps = derive2 { name="GWASinlps"; version="1.2"; sha256="036lv8f58kz6qdwaviyk1q1qsgcj9cimipq1cjrfpn8snkn7s1gh"; depends=[horseshoe mombf speedglm]; }; - GWASinspector = derive2 { name="GWASinspector"; version="1.5.7.1"; sha256="0sz4c5qimsqchjy9659h7436zim2f10hf1aw861iyxbjl81srfhp"; depends=[data_table futile_logger ggplot2 gridExtra hash ini kableExtra knitr R_utils rmarkdown RSQLite]; }; + GWASinspector = derive2 { name="GWASinspector"; version="1.5.7.2"; sha256="0n1k6x38j4sxrsh5mgbcvi4vf6g1mh5xa61k0jaf2pgy2fig5kxr"; depends=[data_table futile_logger ggplot2 gridExtra hash ini kableExtra knitr R_utils rmarkdown RSQLite]; }; GWEX = derive2 { name="GWEX"; version="1.0.2"; sha256="0iykciifbskcrx1qv4874nxli1sq6nbmlfinq4ksir3p93y7ds87"; depends=[abind doParallel EnvStats fGarch foreach lmomco MASS mvtnorm nleqslv Renext]; }; - GWG = derive2 { name="GWG"; version="1.0"; sha256="1va0cd229dhhi1lmrkpwapcm96hrdmxilrmba02xnl7ikhisw0my"; depends=[]; }; GWI = derive2 { name="GWI"; version="1.0.2"; sha256="0gwbidvdzk7b1w880baa338h7cikvlzvqmbmdxca4r83jzzwxlj1"; depends=[]; }; GWLelast = derive2 { name="GWLelast"; version="1.2.2"; sha256="1nm4w5m4ca6npmpvh9nb0cnrbzlyv95nvvhgs3pqcrw4igagm4hj"; depends=[doParallel foreach geosphere glmnet sp spgwr]; }; GWPR_light = derive2 { name="GWPR.light"; version="0.2.0"; sha256="1nkli4jiqkrf7gqs2pjmsnq6zm6gg9dij3gmimnynbajfj0ypil7"; depends=[data_table doParallel dplyr foreach GWmodel iterators lmtest plm sp]; }; @@ -1987,13 +1935,13 @@ in with self; { GenderInfer = derive2 { name="GenderInfer"; version="0.1.0"; sha256="1bdihxxwmp8ffb5blc8hkxnxh2z72vkq1sjak25njq8b1kwnazvn"; depends=[binom ggplot2]; }; GeneClusterNet = derive2 { name="GeneClusterNet"; version="1.0.1"; sha256="1xi4c041c4m39f9wb5fklgmhi6ng78iwzzqch5xk9hx5blq6zd4m"; depends=[G1DBN igraph MASS]; }; GeneCycle = derive2 { name="GeneCycle"; version="1.1.5"; sha256="08pr8xgcznm04c4lhvzv2qnzij5vj7pjzyj9pr1pqpmc977h8dvg"; depends=[fdrtool longitudinal MASS]; }; - GeneF = derive2 { name="GeneF"; version="1.0"; sha256="0bizf47944b2zv9ayxb9rhrqx0ilz2xlvkw7x5vbg7l67y2g2l4d"; depends=[]; }; + GeneF = derive2 { name="GeneF"; version="1.0.1"; sha256="04fmnlj42m9ahq1504pymhq930azr8a5lyggc3bl5awqv1agpzf6"; depends=[]; }; GeneNet = derive2 { name="GeneNet"; version="1.2.16"; sha256="1r1khga3nxxjghs4vnbymzp0cwb1q17zw2v3a94qz8fsrirq1sf1"; depends=[corpcor fdrtool longitudinal]; }; GeneralOaxaca = derive2 { name="GeneralOaxaca"; version="1.0"; sha256="19j5c5xr6mdb6pmih94wbjas4yh0dmsqfggg8clvdxkpwk0h338v"; depends=[boot]; }; GeneralisedCovarianceMeasure = derive2 { name="GeneralisedCovarianceMeasure"; version="0.2.0"; sha256="0xgxmfcpx3mnmp5hxdy5wiihj693qlksv6jxfb9ba4dy2glzdacf"; depends=[CVST kernlab mgcv xgboost]; }; GeneralizedHyperbolic = derive2 { name="GeneralizedHyperbolic"; version="0.8-4"; sha256="01gqfvmzfslhxdnigzbl3rd55hk6r0kgd8fm9xjl0kb9vmb735lm"; depends=[DistributionUtils MASS]; }; GeneralizedUmatrix = derive2 { name="GeneralizedUmatrix"; version="1.2.2"; sha256="055q0rspjw5yin0kia6gcax89cfdmgvgvj1zjh4iswfs48n9xdcj"; depends=[ggplot2 Rcpp RcppArmadillo]; }; - GenericML = derive2 { name="GenericML"; version="0.1.1"; sha256="1jzwvgihl12n4jm37m5b2vz7dvpd7s0f85piaphwdll7bxkpw5pq"; depends=[ggplot2 lmtest mlr3 mlr3learners sandwich splitstackshape]; }; + GenericML = derive2 { name="GenericML"; version="0.2.1"; sha256="0nkiw4fzzv5k8hsaz790hqllp8jdmx4ym5p2a4h41mfysalbyl2r"; depends=[abind ggplot2 lmtest mlr3 mlr3learners sandwich splitstackshape]; }; GeneticSubsetter = derive2 { name="GeneticSubsetter"; version="0.8"; sha256="0bd4snv3dwabc7mknmd2rjmffj67xq535x0bycajhd83d1jhjars"; depends=[]; }; GenoScan = derive2 { name="GenoScan"; version="0.1"; sha256="0p98imfvvz7l94kim3pxypyjs2pbxng4a2nagbafbady82ylr2vi"; depends=[data_table MASS Matrix seqminer SKAT]; }; GenomeAdapt = derive2 { name="GenomeAdapt"; version="1.0.0"; sha256="0jsxqhx62vbsr0hcqk9wrfsg3l3wbnx64pzxx18ps366vg7fxmii"; depends=[gdsfmt qvalue robust SNPRelate]; }; @@ -2002,12 +1950,11 @@ in with self; { GenomicTools = derive2 { name="GenomicTools"; version="0.2.9.7"; sha256="196shxbrcgiwaa7aav2aipsbj1smrkbhinn44aw9qfvz2x9zdz0m"; depends=[circlize data_table GenomicTools_fileHandler gMWT Rcpp RcppArmadillo snpStats stringr]; }; GenomicTools_fileHandler = derive2 { name="GenomicTools.fileHandler"; version="0.1.5.9"; sha256="09l87wf78bj49cdh7r3x81hn15c4pihxih8l59xxrpgdhp69268c"; depends=[data_table snpStats]; }; GeoBoxplot = derive2 { name="GeoBoxplot"; version="1.0"; sha256="164dh49ac3fx38fdglv32lmz92ca8jdd98cbhz6mxsk8r0jcladw"; depends=[]; }; - GeoDE = derive2 { name="GeoDE"; version="1.0"; sha256="0wawkzj0344pprm8g884d7by8v74iw96b109rgm7anal48fl30im"; depends=[MASS Matrix]; }; - GeoFIS = derive2 { name="GeoFIS"; version="1.0.2"; sha256="0y56knh2kkns5faydf5wm22v07xv42qbvgarxpc8jygdf7z0qjd1"; depends=[BH data_tree FisPro foreach nnls R6 Rcpp Rdpack rgeos sp]; }; + GeoFIS = derive2 { name="GeoFIS"; version="1.0.3"; sha256="0a05cmqnnbk0j5phycaxbqcjc79w5f4m0jlkafa9agdg5x4a8wfk"; depends=[BH data_tree FisPro foreach nnls R6 Rcpp Rdpack rgeos sp]; }; GeoMongo = derive2 { name="GeoMongo"; version="1.0.3"; sha256="0m5nz5q81jz2v2bl2dbgdbdprrkckxr2c67qn0cg9vms0pi3fawr"; depends=[data_table geojsonR R6 reticulate]; }; GeoRange = derive2 { name="GeoRange"; version="0.1.0"; sha256="0krj9570wkhdvpaqkq3nf0maglqd44mpwn4v1bymvgpk1i1wf5p3"; depends=[moments proj4 raster sp velociraptr]; }; GeoTcgaData = derive2 { name="GeoTcgaData"; version="1.0.2"; sha256="1s3l445igzf1xirfxjkp34djcfipbpcgyd5fd3icnsy2dkfkc787"; depends=[cqn data_table magrittr plyr]; }; - GeoWeightedModel = derive2 { name="GeoWeightedModel"; version="0.9.1"; sha256="0fg41vn6k47ib8y4hdywi3nmn25i6ldqib5v7bhcrkzsvcqj7l5n"; depends=[beepr cartography dplyr DT GWmodel raster readxl shiny shinyalert shinyBS shinybusy shinydashboard shinyjs shinyWidgets sp]; }; + GeoWeightedModel = derive2 { name="GeoWeightedModel"; version="1.0.0"; sha256="0i2qji69hjbzrwkbadvg8gwbralx2p0x4gqba8nh25la2fjwqqr7"; depends=[beepr cartography dplyr DT GWmodel raster readxl shiny shinyalert shinyBS shinybusy shinydashboard shinyjs shinyWidgets sp spdep]; }; GeodRegr = derive2 { name="GeodRegr"; version="0.2.0"; sha256="029yclgi4np000yh42j68v32m32lq2hmkh94q33hh1qkx8rilfa7"; depends=[MASS zipfR]; }; GeodesiCL = derive2 { name="GeodesiCL"; version="1.0.0"; sha256="1i3i6vlh3nnb7z6qzh2cd6cqka78bfdly952x5ryl7cb2590a4pc"; depends=[dplyr htmltools leaflet leafpop magrittr mapview profvis readr rgdal sp tibble]; }; GeomComb = derive2 { name="GeomComb"; version="1.0"; sha256="05xb6m2ciszxd13yhqdkildh9nsq19ss8885ngj6ynvbchqkii7r"; depends=[forecast ForecastCombinations ggplot2 Matrix mtsdi psych]; }; @@ -2019,7 +1966,7 @@ in with self; { GetLattesData = derive2 { name="GetLattesData"; version="1.4"; sha256="129hnhmw8aw81whyj3g7npwgmg4fmvsji9h2xfg78nrp0abjxijv"; depends=[curl dplyr readr stringdist stringr XML]; }; GetQuandlData = derive2 { name="GetQuandlData"; version="0.1.0"; sha256="1g1as4m853ab1wp57rzqm0552g0vm7kxzypibv0xywc85084pnmc"; depends=[dplyr jsonlite memoise purrr readr scales stringr]; }; GetR = derive2 { name="GetR"; version="0.1"; sha256="1b2wirhz4nhvmf863czwb8z8b42ilsyjjrg9rc4nd9b7nz50bmjg"; depends=[party]; }; - GetTDData = derive2 { name="GetTDData"; version="1.4.5"; sha256="03najzq408sr5vfqnkzc15i0p06w4a25773sr2998h92pihjcqwp"; depends=[bizdays curl dplyr readxl rvest stringr tidyr xml2]; }; + GetTDData = derive2 { name="GetTDData"; version="1.5.1"; sha256="0w77bc03k6qdpx1c87rdmnz976q9a5n84bav5xv78rg7yw7q5ksy"; depends=[bizdays curl dplyr readxl rvest stringr tidyr xml2]; }; GetoptLong = derive2 { name="GetoptLong"; version="1.0.5"; sha256="00fpm6nd3kqa2ikasxa62jzywi46fvvmx1mdavcp5yrxxn37j8wc"; depends=[crayon GlobalOptions rjson]; }; Ghat = derive2 { name="Ghat"; version="0.1.0"; sha256="1w5agphnbngc0ldb3gbgh4b8ww956lf31bfyxw2zp56crx4akcxf"; depends=[rrBLUP]; }; Ghost = derive2 { name="Ghost"; version="0.1.0"; sha256="0anrb1n3f3jnq2p0dgqzw5a0gby2slafv2bybgy5gm3f9fsj831w"; depends=[R6]; }; @@ -2070,18 +2017,16 @@ in with self; { Guerry = derive2 { name="Guerry"; version="1.7.4"; sha256="0v5p4zcxjibi12fqiqwzjxhjx1i9rh77p14ylyi3qhcwb8f1fszq"; depends=[sp]; }; GuessCompx = derive2 { name="GuessCompx"; version="1.0.3"; sha256="1xbkh1wh2z0n964w8lwi7q4rr7mls0awf5k7n5jjklhq4b6gswic"; depends=[boot dplyr ggplot2 lubridate reshape2]; }; GxEScanR = derive2 { name="GxEScanR"; version="2.0.2"; sha256="0k3avad4b2x4sqv8iilx5a8gkybjlipx50mj0la4kl9xv0azshkd"; depends=[prodlim Rcpp RcppArmadillo]; }; - GxM = derive2 { name="GxM"; version="1.1"; sha256="02rv8qb46ylk22iqn9cgh63vkyrg9a8nr1d0d3j5hqhi0wyhc41r"; depends=[minqa nlme Rcpp]; }; H2x2Factorial = derive2 { name="H2x2Factorial"; version="2.0.0"; sha256="01if0ps43xhcw6q5khdbvjd0yvvhkcj4gvdx538g2kaxzi3lrj1z"; depends=[mvtnorm]; }; HAC = derive2 { name="HAC"; version="1.1-0"; sha256="1k19qrirhzl8qaa4svf7qa90r7gphbbvm9m0977z9gd704n8b62a"; depends=[copula]; }; HACSim = derive2 { name="HACSim"; version="1.0.5"; sha256="0161h3yhi3bh0jq7x105p3rjlrvl46k4iahfz4k84wsvw3akgk1a"; depends=[ape pegas Rcpp RcppArmadillo]; }; - HAPim = derive2 { name="HAPim"; version="1.3"; sha256="03qy0pxazv3gdq3fck7171ixilb9zi1dwnvc4v7d726g0lvn80pg"; depends=[]; }; HARModel = derive2 { name="HARModel"; version="1.0"; sha256="17sajqi2g5z69gvnfhkn850jkavi8syhm58xadd2khrm73nvwh2i"; depends=[Rcpp RcppArmadillo sandwich xts zoo]; }; HARtools = derive2 { name="HARtools"; version="0.0.5"; sha256="10a92jsk1ccgxi5g6byrs4fbj5l2kih7vhib0jg6spdqi6rhqla1"; depends=[assertthat htmltools htmlwidgets jsonlite magrittr]; }; HBSTM = derive2 { name="HBSTM"; version="1.0.1"; sha256="0bx7dxcfj46k4kqpqb39w4qkm4hvr1ka8d8rws445vkyl31kr0q6"; depends=[fBasics maps MASS]; }; HBV_IANIGLA = derive2 { name="HBV.IANIGLA"; version="0.2.1"; sha256="08876xg44md619m8cj1xb34g8xyrp8231nh5z0q6dzggdyfvicir"; depends=[Rcpp]; }; HBglm = derive2 { name="HBglm"; version="0.1"; sha256="1sral7lh5qw5mn31n8459pk52frgw1bjq0z5ckpsnbc4qf3xxcjn"; depends=[bayesm Formula MfUSampler sns]; }; - HCD = derive2 { name="HCD"; version="0.1"; sha256="158szwhpxwj2dj7sibyh8l92dk9cmy6acapmk8wf5hmfybdpgbsh"; depends=[data_table data_tree dendextend irlba Matrix randnet RSpectra stringr]; }; HCR = derive2 { name="HCR"; version="0.1.1"; sha256="14s46dyw3ifp3pwwlcwbbl47i6hy2whjj1n65i28am5a33nycgha"; depends=[data_table]; }; + HCT = derive2 { name="HCT"; version="0.1.3"; sha256="18k6p9y3vl39mxbvdjanyj3w74jqy2rym6rdbfrx5crvqm9k8hcp"; depends=[rstan]; }; HCTDesign = derive2 { name="HCTDesign"; version="0.7.1"; sha256="0gwj4z2qwxqzx8b3hnb4bfg1pm78n9g4j5x8gis1rcfrk68sl7d5"; depends=[diversitree flexsurv mvtnorm Rdpack survival]; }; HCTR = derive2 { name="HCTR"; version="0.1.1"; sha256="1hg8mpallwxpmamk6q8x87w5hlqqwvbahfw5zmr9pisiagbwcsay"; depends=[glmnet harmonicmeanp MASS ncvreg Rdpack]; }; HCV = derive2 { name="HCV"; version="1.2.0"; sha256="00ry36w2v4h3vkf2jq3djcma23xflr7fx7icy2vzwk9ffnmzvpxd"; depends=[BLSM cluster geometry M3C MASS Matrix rgeos sp]; }; @@ -2093,9 +2038,8 @@ in with self; { HDGLM = derive2 { name="HDGLM"; version="0.1"; sha256="0a5lnh3780lsczj8339sp97c5y64a2gsdf77i56fvpxpphq0dnf8"; depends=[]; }; HDInterval = derive2 { name="HDInterval"; version="0.2.2"; sha256="1vb5fn9zfig0jqs3mvkpik4wvrndj4qmxqx8rg0iv8nvqc4fnzh4"; depends=[]; }; HDLSSkST = derive2 { name="HDLSSkST"; version="2.1.0"; sha256="19snvpgiq8kxzqv6yimzn7nfxkch2xkm0sk41m7g4xwr412dn49j"; depends=[Rcpp]; }; - HDMD = derive2 { name="HDMD"; version="1.2"; sha256="0na0z08fdf47ghfl2r3fp9qg5pi99kvp7liymwxym2wglkwl4chq"; depends=[MASS psych]; }; HDMT = derive2 { name="HDMT"; version="1.0.5"; sha256="11wr7n6gj75k3a339h9hm167pni3vdbbnwwblc2b0wfljxsif6hf"; depends=[fdrtool qvalue]; }; - HDPenReg = derive2 { name="HDPenReg"; version="0.94.7"; sha256="16kmx3lddjvz8k7sric0s9ajhlgp62gf1zkyiscaf7w0pjwzin28"; depends=[Matrix Rcpp rtkore]; }; + HDPenReg = derive2 { name="HDPenReg"; version="0.94.8"; sha256="0izphqcsny1vz4a16h2h0zh4lf69l2qipm0xa56xhm3a9zmcpn1b"; depends=[Matrix Rcpp rtkore]; }; HDShOP = derive2 { name="HDShOP"; version="0.1.2"; sha256="0qnxgp7fjinj9c96w724nxvmb2xbihj2wd6ysibr5dk4rvlq16p0"; depends=[Rdpack]; }; HDSpatialScan = derive2 { name="HDSpatialScan"; version="1.0.2"; sha256="0j6frhnxbchy2r425zhx952vvdivrpcrq0440rr4mbr4rla2ci4s"; depends=[DT fmsb matrixStats plotrix purrr Rcpp RcppArmadillo rgdal rgeos sp SpatialNP swfscMisc TeachingDemos]; }; HDTSA = derive2 { name="HDTSA"; version="1.0.1"; sha256="09b3jz552v3hmnhi6ag0dhc7nr5gdc688mcf3n9q8qzvc3l6dglc"; depends=[clime Rcpp RcppEigen sandwich]; }; @@ -2105,7 +2049,7 @@ in with self; { HDiR = derive2 { name="HDiR"; version="1.1.1"; sha256="1j9y1sc642ghz0rfdsrsg46c56mgdg9444a4b5zv2ami9b4zs2an"; depends=[circular Directional movMF NPCirc rgl]; }; HDoutliers = derive2 { name="HDoutliers"; version="1.0.4"; sha256="0vc3g36cghs2ln8a3pb344b3vw1jpz9r8ld77ldd898vg9rhkq2m"; depends=[FactoMineR FNN mclust]; }; HDtest = derive2 { name="HDtest"; version="2.1"; sha256="1c9x4s59762sp7drbm5h1xv22kpifq7p0x3dkrfcd0ficbbma5v8"; depends=[checkmate clime doParallel expm fastclime foreach MASS mvtnorm]; }; - HDtweedie = derive2 { name="HDtweedie"; version="1.1"; sha256="14awd7sws0464f68f5xwnv1xvr0xflvx2z2zzcfj1csvk3af0zzj"; depends=[]; }; + HDtweedie = derive2 { name="HDtweedie"; version="1.2"; sha256="0m8xg6fkn81ni1npfadhv2b2zy7nazg46217hr3xw9y53d1a90gk"; depends=[]; }; HEDA = derive2 { name="HEDA"; version="0.1.5"; sha256="0arya76isiaxmgmhl7q93vmga9apmbkq3scgz7zhgnrkd8mkh0i1"; depends=[dplyr ggplot2 lubridate rlang zoo]; }; HEMDAG = derive2 { name="HEMDAG"; version="2.7.4"; sha256="1dmfy5bbnjmjb4d7430i38z9hvpcrwafj6hw46118hwzcl4b6ldv"; depends=[doParallel foreach graph plyr precrec preprocessCore RBGL]; }; HETOP = derive2 { name="HETOP"; version="0.2-6"; sha256="1fjwyqh7l296pghmc4m81q8icgbhvqvxr61zd638fr46gls3ky2p"; depends=[R2jags]; }; @@ -2114,10 +2058,9 @@ in with self; { HGSL = derive2 { name="HGSL"; version="1.0.0"; sha256="1p453xr3d1bmqc6mrmzb0hz9p0gp25m6v6qr0l3bapcf71vzbvq1"; depends=[]; }; HH = derive2 { name="HH"; version="3.1-47"; sha256="1h47s1rp49p3fy4ssh4jxyxp87306lsl2hkfdksjs4j9vv3hm4ah"; depends=[abind colorspace gridExtra Hmisc lattice latticeExtra leaps multcomp RColorBrewer reshape2 Rmpfr shiny vcd]; }; HHG = derive2 { name="HHG"; version="2.3.4"; sha256="1ghw1rpf7n0dfclvxm3p02ym247p3rsncj9f9f97892lk9yin29c"; depends=[Rcpp rmarkdown]; }; - HI = derive2 { name="HI"; version="0.4"; sha256="0i7y4zcdr6wcjy43lz9h8glzpdv0pz7livr95xb1j4p8zafykday"; depends=[]; }; + HI = derive2 { name="HI"; version="0.5"; sha256="0s63w3nrcw2zvrmkm54h1292y2iscdc1bck1wwf39qjndylcxvf4"; depends=[]; }; HIMA = derive2 { name="HIMA"; version="2.0.0"; sha256="0r6hb3hi0z7mzw7m8qafbk6qqw9fs5119fnsnbinmfwx1w9wci2v"; depends=[doParallel foreach glmnet HDMT hommel iterators MASS ncvreg survival]; }; HIV_LifeTables = derive2 { name="HIV.LifeTables"; version="0.1"; sha256="0qa5n9w5d5l1kr4827a34581q380xmpyzmmhhl300z1jwr0j94df"; depends=[]; }; - HIest = derive2 { name="HIest"; version="2.0"; sha256="0ik55kxhzjyg6z6072iz9nfaj7x1nvf91l1kysgvkjccr6jf3y86"; depends=[nnet]; }; HK80 = derive2 { name="HK80"; version="0.0.2"; sha256="0c8scpzl5xgqm9rlsvh5nl3bz42i5pzvb873j9bn3bi15gcknbny"; depends=[]; }; HKprocess = derive2 { name="HKprocess"; version="0.0-2"; sha256="1j2yhb7k8zf4nlzdf0p6x9ca7ak4lwwak8mcc60kpilw2fws27k5"; depends=[gtools MCMCpack]; }; HLMdiag = derive2 { name="HLMdiag"; version="0.5.0"; sha256="0yy0qf9iw5gr40vlmm697rvvvgp077f08fialx3ijn0vfpsjbl2v"; depends=[diagonals dplyr ggplot2 ggrepel janitor magrittr MASS Matrix mgcv plyr purrr Rcpp RcppArmadillo reshape2 rlang stringr tibble tidyselect]; }; @@ -2140,9 +2083,9 @@ in with self; { HRM = derive2 { name="HRM"; version="1.2.1"; sha256="0qsxwi0v61k1waw21nrz86jazd5wgq2drhan3w8pmb35q2z20s35"; depends=[data_table doBy ggplot2 MASS matrixcalc mvtnorm plyr pseudorank Rcpp reshape2 xtable]; }; HRW = derive2 { name="HRW"; version="1.0-5"; sha256="08fh9504cck1ffrwim27nkrm9y1in6jl1s7zs8h8x3ik54p9jb0k"; depends=[KernSmooth]; }; HS = derive2 { name="HS"; version="1.1"; sha256="1vhbchc446j49jj7jgmy4l59n8ahk5l8jp1rl5xwsmn9iqir62mp"; depends=[data_table ggplot2 ggpubr partitions reshape2 tidyr zoo]; }; - HSAUR = derive2 { name="HSAUR"; version="1.3-9"; sha256="0b2hyn59lr2pma87fcj7mli3qmrbnfhgd8fv02fa317rj52399qz"; depends=[]; }; - HSAUR2 = derive2 { name="HSAUR2"; version="1.1-18"; sha256="0ggya24clwydi7aligdayds3jpq2ckr4xfm4nik0r6j97x4gl1mj"; depends=[]; }; - HSAUR3 = derive2 { name="HSAUR3"; version="1.0-12"; sha256="002vrxrdhi328ngb7ijz67bbjsg4zapv2gy08xnn9l5idgpnly6q"; depends=[]; }; + HSAUR = derive2 { name="HSAUR"; version="1.3-10"; sha256="1z4drab395bnyfbd19rn9hr1gz78ny773g1anh54w18iszakkvib"; depends=[]; }; + HSAUR2 = derive2 { name="HSAUR2"; version="1.1-19"; sha256="0jmljx1pppq81h637kxgs35bfclzfs2pkms72b8immd6xf58kg4h"; depends=[]; }; + HSAUR3 = derive2 { name="HSAUR3"; version="1.0-13"; sha256="17l7gx6c1jl1jz33q08lgd2fwckvxlm5gpwvbfzza48j97r5p7by"; depends=[]; }; HSDiC = derive2 { name="HSDiC"; version="0.1"; sha256="0wiixb1ylx0l8qfgh5ark6alkdq87xaak1jlxizw1m589vghvqfp"; depends=[glmnet Matrix ncvreg quadprog]; }; HSEtest = derive2 { name="HSEtest"; version="0.1.0"; sha256="0dzc44icmb1kkjr46siqigy0zpi66189qpwijgmlqwhzrj4yql9c"; depends=[]; }; HSPOR = derive2 { name="HSPOR"; version="1.1.9"; sha256="06lr8l71y5fcqcnmgq7cgiab1pcc98wnqzndbxcbikbh33cx7nxv"; depends=[corpcor npregfast]; }; @@ -2156,16 +2099,13 @@ in with self; { HWEintrinsic = derive2 { name="HWEintrinsic"; version="1.2.2"; sha256="035r5bi7m66g351cmrfmf4cj5qqm4fn5pgy3lzsp3gyp2dv0rkg5"; depends=[]; }; HaDeX = derive2 { name="HaDeX"; version="1.2.2"; sha256="1qj6n03pd5kd5ff5h4v8wmnqxxylsxx1p6i88nahqkah2mzg9jdr"; depends=[data_table dplyr DT ggplot2 gsubfn latex2exp readr readxl reshape2 shiny stringr tidyr]; }; HadamardR = derive2 { name="HadamardR"; version="1.0.0"; sha256="0nr8m6fchpmlvhyisb61y0fymjjrk2k1sd67r14n87sgn3mafh4a"; depends=[numbers openxlsx]; }; - HadoopStreaming = derive2 { name="HadoopStreaming"; version="0.2"; sha256="1l9msaizjvnsj1jrpghj4g057qifdgg6vbqhfxhn1fiqdqi2056q"; depends=[getopt]; }; HandTill2001 = derive2 { name="HandTill2001"; version="1.0.1"; sha256="0wgr3rhz1iklirpnzk25afh8fv1qpi2ijmx4xwzplw3w3qir4yv6"; depends=[]; }; Hapi = derive2 { name="Hapi"; version="0.0.3"; sha256="0jqjhfq38k161kqff5cx0vxpsmjm2y5ca7049mvqiwqwvi4fp08m"; depends=[ggplot2 HMM]; }; Haplin = derive2 { name="Haplin"; version="7.2.3"; sha256="1s1jlyr0gwvigfndqjbxb8zib6hkmn341khsnv87f82vzakmhi80"; depends=[ff MASS mgcv rlang]; }; HaploSim = derive2 { name="HaploSim"; version="1.8.4"; sha256="0794f76hc9qvjmay7c61cmzycqafljs0g0hliq9xfrw4f23gq3sa"; depends=[]; }; - HardyWeinberg = derive2 { name="HardyWeinberg"; version="1.7.4"; sha256="11y3zg8aqxk5xdzsv7i3bgqkky6a0wgf2n8saa3a4adq75k328ib"; depends=[mice nnet Rcpp Rsolnp]; }; - HarmonicRegression = derive2 { name="HarmonicRegression"; version="1.0"; sha256="0inz3l610wl0ibqjyrhfbmwmcfzcmcfhixai4lpkbfsyx93z2i4d"; depends=[]; }; + HardyWeinberg = derive2 { name="HardyWeinberg"; version="1.7.5"; sha256="0b3szw090dsc3bkas2kvx787ww2i6zzg2qmdyivmqc8amx5arn6g"; depends=[mice nnet Rcpp Rsolnp]; }; Harvest_Tree = derive2 { name="Harvest.Tree"; version="1.1"; sha256="021zmppy7p2iakaxirfjdb5jzakg1ijma9d25ly2ni0nx0p1mh6z"; depends=[rpart]; }; HazardDiff = derive2 { name="HazardDiff"; version="0.1.0"; sha256="048lvhb4545a487kyknf5b5v8q3a9nsipbh0ii2k3pcc5vfql1h4"; depends=[ahaz Rdpack rootSolve survival]; }; - HeckmanEM = derive2 { name="HeckmanEM"; version="0.1.2"; sha256="1q9sad19ccq30ggvcj1byhka4dwa94k6z31ig56vi3031nx2424n"; depends=[MomTrunc mvtnorm PerformanceAnalytics sampleSelection]; }; HellCor = derive2 { name="HellCor"; version="1.3"; sha256="1bzc2ipm7vw7s849d43lcs0xrk2rs67h223dn9kahqg152mmknza"; depends=[energy FNN orthopolynom]; }; HelpersMG = derive2 { name="HelpersMG"; version="5.1"; sha256="0wdqfg3vlia2mx8vpm406pcb9l4aa9q94var912k8lsv0al7d30i"; depends=[coda lme4 MASS Matrix]; }; HeritSeq = derive2 { name="HeritSeq"; version="1.0.2"; sha256="0jzf3pq43lllxvvmf0rqzxz9fx6931mgb0ipminlw1iakz8wa6w3"; depends=[cplm DESeq2 lme4 MASS pbapply SummarizedExperiment tweedie]; }; @@ -2176,7 +2116,6 @@ in with self; { HiClimR = derive2 { name="HiClimR"; version="2.2.1"; sha256="11aip68cjyy70xr0la1apk6gbkabg8vnc3s5cbydyz7yl4v80nn8"; depends=[ncdf4]; }; HiCseg = derive2 { name="HiCseg"; version="1.1"; sha256="19581k3g71wrznyqrp4hmspqyzcbcfbc48xgjlq13zmqii45hcn6"; depends=[]; }; HiDimDA = derive2 { name="HiDimDA"; version="0.2-4"; sha256="0gxkxzys9mcy33xvsim8klaqmb2xwvy5bvgkn9r400j4qfjd3cgg"; depends=[]; }; - HiLMM = derive2 { name="HiLMM"; version="1.1"; sha256="09135cwi6kqrvzdlivm86q1dqn6cbbi6nspdm0c2s700jl49pl5z"; depends=[]; }; HiResTEC = derive2 { name="HiResTEC"; version="0.59"; sha256="08c5zvj1as28skhlyybrjinc9wawdsqfxiwybd0ni0ljh2i2sc5c"; depends=[beeswarm Biobase InterpretMSSpectrum openxlsx plyr Rdisop]; }; HiddenMarkov = derive2 { name="HiddenMarkov"; version="1.8-13"; sha256="05dm3nl0ffsz2ziw3bz5bivyxk7r5bxs8xhky3hz660qaqzd51ki"; depends=[]; }; HierDpart = derive2 { name="HierDpart"; version="1.5.0"; sha256="10sphan6slzj6bsbzff4z7pglkjhv6xy719dm7594fmgqfjz0ici"; depends=[ade4 adegenet ape diveRsity entropart GGally ggplot2 hierfstat mmod pegas permute reshape2 tibble vegan]; }; @@ -2187,7 +2126,7 @@ in with self; { HistData = derive2 { name="HistData"; version="0.8-7"; sha256="0cs231w4x8sw2dwy04xwiw01rr2brfz9smwmplw5g1jv1d7afnlj"; depends=[]; }; HistogramTools = derive2 { name="HistogramTools"; version="0.3.2"; sha256="1wkv6ypn006d8j6bpbhc1knw0bky4y8r7jp87482yd19q5ljsgv0"; depends=[ash Hmisc stringr]; }; HiveR = derive2 { name="HiveR"; version="0.3.63"; sha256="1vi24k23a017czfy9kihmq4s1dywzm274dyhyp1imx94afsnmhc3"; depends=[jpeg plyr png RColorBrewer rgl]; }; - Hmisc = derive2 { name="Hmisc"; version="4.6-0"; sha256="1bd1c8sichyijprfpnqj5g72nmgs9jvi0zyw8v4nsg1kn83fj71c"; depends=[base64enc cluster data_table foreign Formula ggplot2 gridExtra gtable htmlTable htmltools lattice latticeExtra nnet rpart survival viridis]; }; + Hmisc = derive2 { name="Hmisc"; version="4.7-0"; sha256="1gc71wg6f17x6nriphs1kk39ix7lpqk32clk1qshqy8wl6f2vv19"; depends=[base64enc cluster data_table foreign Formula ggplot2 gridExtra gtable htmlTable htmltools lattice latticeExtra nnet rpart survival viridis]; }; Hmsc = derive2 { name="Hmsc"; version="3.0-11"; sha256="12h9k73bys6ihgs4wgssn9jlgig0kim8i49nqgd3jnd1i3m9b3ii"; depends=[abind ape BayesLogit coda fields FNN ggplot2 MASS Matrix matrixStats MCMCpack nnet pracma pROC rlang sp statmod truncnorm]; }; HoRM = derive2 { name="HoRM"; version="0.1.3"; sha256="09dkpzlwkkdn0z8g9fbb7hzxbrrq70x9v1zx254svck2jyk0hx58"; depends=[ggplot2 MASS orthopolynom quantmod rsm]; }; Homeric = derive2 { name="Homeric"; version="0.1-3"; sha256="1vcs8fj39zpz45p7gph0mnx65hgr35na0b79i8llyw7i1h7zqzxr"; depends=[]; }; @@ -2195,7 +2134,6 @@ in with self; { Hotelling = derive2 { name="Hotelling"; version="1.0-8"; sha256="04x2x3anwf4d71dm7x6y08ysk7ygysshc0avisyshbl52x39l8si"; depends=[corpcor]; }; HotellingEllipse = derive2 { name="HotellingEllipse"; version="0.1.1"; sha256="0wdsqnxqvpm124kfksflkddd55hdrfcf8hwq7l6j57f4szwqw7k2"; depends=[dplyr FactoMineR ggforce ggplot2 lifecycle magrittr purrr tibble]; }; HuraultMisc = derive2 { name="HuraultMisc"; version="1.1.1"; sha256="0bi1y7icrg0f4n9ah9dsrijnfr39bqg3799rz4hccd1b061f0rvj"; depends=[cowplot dplyr ggplot2 HDInterval Hmisc magrittr reshape2 rstan tidyr]; }; - HyPhy = derive2 { name="HyPhy"; version="1.0"; sha256="0994ymv7sswbp8qw3pay34s926cflw2hq2gnchw7rknybvlsrinq"; depends=[ape R_utils]; }; HyRiM = derive2 { name="HyRiM"; version="2.0.1"; sha256="09njf2gscn13x5mfd7g76cam9bzbibcnc383gb8h0kks7x16d3p9"; depends=[compare grImport2 orthopolynom purrr Rglpk]; }; HydeNet = derive2 { name="HydeNet"; version="0.10.11"; sha256="1qi87k2drizqba1nz8psh697ks8ai8xz492kzsrs76xlxpbk1i9k"; depends=[checkmate DiagrammeR dplyr graph magrittr nnet pixiedust plyr rjags stringr]; }; HydroCode = derive2 { name="HydroCode"; version="1.0.2"; sha256="1igshik28xcxrdg116vs9s2yfbz5fik9xvlgfkgai3w9qj0x1h5q"; depends=[sp]; }; @@ -2208,15 +2146,12 @@ in with self; { IATScore = derive2 { name="IATScore"; version="0.1.1"; sha256="0sg4apj1sp0xc311cbkvflhv9kw1jxvjhdr0xjw79s662mnhkhgz"; depends=[]; }; IATanalytics = derive2 { name="IATanalytics"; version="0.1.1"; sha256="10g9iscfjmlxrkzls9320h9azpc5fnhh6276p7zn8sxqgp1nvnz9"; depends=[]; }; IATscores = derive2 { name="IATscores"; version="0.2.7"; sha256="1dmcwkylq6zazjycjsmbxnzvkav19w13j69gnm1f558wsdxpvhx1"; depends=[dplyr qgraph reshape2 stringr]; }; - IAbin = derive2 { name="IAbin"; version="1.0"; sha256="1cpj2mx72n4v0yd8jbbnhj2w5d0sc8pw7rc8ahnn1hfa38pwwsyx"; depends=[]; }; IAcsSPCR = derive2 { name="IAcsSPCR"; version="1.2.1"; sha256="0x0h1vicw0jlm9p10cw7g75g2x0d73rjpdwh1j7lxq6cnbpkbxf9"; depends=[abind FrF2 lattice stringi]; }; IBCF_MTME = derive2 { name="IBCF.MTME"; version="1.6-0"; sha256="1nlfsfdw8lfr3n2717i6kn1hafwr6hmqzfpg249amlrfjn0pghji"; depends=[dplyr lsa tidyr]; }; IBDLabels = derive2 { name="IBDLabels"; version="1.1"; sha256="1m9fd058yjxva6hin7i72i2nl285wfm0jkdn5xcng27yqlijyrm9"; depends=[]; }; - IBDhaploRtools = derive2 { name="IBDhaploRtools"; version="1.8"; sha256="1754239pdil6b383mpzyi8zb9l9hzg15dwgn5246v97g1y3mlp5r"; depends=[]; }; IBDsim = derive2 { name="IBDsim"; version="0.9-8"; sha256="1a0xz1khl6cz6ajcn903fcmsv8g7hfdh7684zhk0g6awsgwqdf5q"; depends=[paramlink]; }; IBMPopSim = derive2 { name="IBMPopSim"; version="0.3.1"; sha256="1infqxfwqg6y4d8g3wmi3wg243hqjjmzirm00dhxiav4ps8yrg1q"; depends=[checkmate dplyr ggplot2 purrr Rcpp readr reshape rlang tidyr]; }; - IBrokers = derive2 { name="IBrokers"; version="0.9-12"; sha256="0mhh4kgwrncrcysvnvah6xc7fhx5ywjzn258cs9xj9kzns0jblk6"; depends=[xts zoo]; }; - IC2 = derive2 { name="IC2"; version="1.0-1"; sha256="03jjb62msxjxdg9l3zd1ns0d2w37hkxy5pnjgaywxw3vfk4zwfj9"; depends=[]; }; + IBrokers = derive2 { name="IBrokers"; version="0.10-1"; sha256="0fvbgcbxmgjnzqrxwc4iq14li9gxkg0bd4yj9wgx4y6akn7xaykw"; depends=[xts zoo]; }; ICAFF = derive2 { name="ICAFF"; version="1.0.1"; sha256="0zazx4nv81s75appg10aayks04mx6m5n9yf5hqrbxh3yj68vzxfy"; depends=[]; }; ICAMS = derive2 { name="ICAMS"; version="2.3.10"; sha256="0kkxn45addgl7mg8w4ybna7xaj11dgrwax06l0ml3bnk8h0nrgi5"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges IRanges RColorBrewer stringi zip]; }; ICAOD = derive2 { name="ICAOD"; version="1.0.1"; sha256="07fxh60vsndlvjijjsh1a9l2qkp78sb9nkg5x5mslh209lpjjhw1"; depends=[cubature mnormt mvQuad nloptr Rcpp RcppEigen sn]; }; @@ -2227,7 +2162,6 @@ in with self; { ICCbin = derive2 { name="ICCbin"; version="1.1.1"; sha256="1pzlaj7w98pgrlg3zvpmdv0dpgi5gih0j73qv86ak75fkxvrnzzw"; depends=[]; }; ICD10gm = derive2 { name="ICD10gm"; version="1.2.4"; sha256="0p73hn4k6iphfycjmcbfsqjmmhn2x16fcdd5gwb5imc0jxc3f2l4"; depends=[dplyr magrittr purrr rlang stringi tibble tidyr tidyselect]; }; ICDS = derive2 { name="ICDS"; version="0.1.2"; sha256="1bnj2ngh2n2yhgx8z9kawnpgkfgqw3b8xw9wkhimws4f2ir4k1zl"; depends=[graphite igraph metap org_Hs_eg_db]; }; - ICE = derive2 { name="ICE"; version="0.69"; sha256="04p8lakaha28mdh965w0ppyxfrz5ssi1n9xifvsbn3ihdra67rip"; depends=[KernSmooth]; }; ICEbox = derive2 { name="ICEbox"; version="1.1.2"; sha256="170gg2fg9307yc2b25lsj8d1zla0frjxl47qh0njlqlrpi8jmm7i"; depends=[sfsmisc]; }; ICEinfer = derive2 { name="ICEinfer"; version="1.3"; sha256="0hg1vdg9clsk24lqdh89dfzlb0mnig690wq06pzd5nl9mr6dlvns"; depends=[lattice]; }; ICGE = derive2 { name="ICGE"; version="0.4.1"; sha256="0w6hbi3h98q6gsxqbb43p95v6xykgrasxcjivwm8hw9fly4avxyi"; depends=[cluster fastcluster MASS]; }; @@ -2264,30 +2198,29 @@ in with self; { IDmeasurer = derive2 { name="IDmeasurer"; version="1.0.0"; sha256="0n7rziaaxm9dqixmw6rxgq9dwnwdl3dsdnpd9s59k5skdlaxnl5m"; depends=[infotheo lme4 MASS]; }; IDmining = derive2 { name="IDmining"; version="1.0.7"; sha256="1yv8lclkb1ws2n4yd3l561lqhp25vlw0f6d073yg04pidr2dpg2a"; depends=[data_table doParallel foreach]; }; IETD = derive2 { name="IETD"; version="1.0.0"; sha256="0avhyw0zcb8vj0nqfy41yq5kcd8yf9rmaawdvfcy5rqwxmi1mw9l"; depends=[doParallel dplyr foreach ggplot2 lubridate Rdpack]; }; - IFAA = derive2 { name="IFAA"; version="1.0.5"; sha256="1qqmdlvgphf9qfxjznrjh60p83vamvnsl7jd3zbm38yfv00n51yd"; depends=[doParallel expm foreach future glmnet HDCI mathjaxr Matrix qlcMatrix rlecuyer]; }; + IFAA = derive2 { name="IFAA"; version="1.0.6"; sha256="1vpl2sl4bnqg6i6w5vqyg65zhl4cz1rxxf2xkh5afd814i3zbsiq"; depends=[doParallel expm foreach future glmnet HDCI mathjaxr Matrix qlcMatrix]; }; IFC = derive2 { name="IFC"; version="0.1.2"; sha256="1g5l85mjnf08dxszbybwg5z1k2dwgvhbrls8r37iq45rcb31pmyh"; depends=[DT gridExtra jpeg KernSmooth lattice latticeExtra png Rcpp RcppProgress tiff visNetwork xml2]; }; IFP = derive2 { name="IFP"; version="0.2.4"; sha256="066wz6bjqcvq22gjg2wcmglp798f87rsc8yhm13p0dic3arb5ph6"; depends=[coda haplo_stats]; }; - IGG = derive2 { name="IGG"; version="1.0"; sha256="1cibb9z18xc1zx1813lk14n6p5am84hm7w0hkrsif4j3p89lrwif"; depends=[GIGrvg glmnet MASS Matrix pscl]; }; IGP = derive2 { name="IGP"; version="0.2.0"; sha256="1hsyl6cjm84w4f4v0gw4hi5y483r8v78xb3k3h1ixix9ymjqr8y5"; depends=[R6 reticulate]; }; IGST = derive2 { name="IGST"; version="0.1.0"; sha256="12ycrfsgwakaj3k39k1j4ky58wr7a2ibyz6j9cznvjjv6cgz9zg5"; depends=[BootMRMR e1071]; }; IGoRRR = derive2 { name="IGoRRR"; version="0.3.2"; sha256="1px023pjyjd7z1742xx1w37dhkyprhbkha93snm6s25cmg0jhfrn"; depends=[clipr dplyr feather fst fuzzyjoin ggformula glue haven Hmisc htmltools jsonlite lubridate magrittr mapsf purrr readODS readxl rhandsontable rio shiny shinydashboard shinyFiles shinyWidgets skimr sortable stringr tables tibble tidyr zoo]; }; - IHSEP = derive2 { name="IHSEP"; version="0.2"; sha256="1qb6mn9bsd69pifmphywmj6j71v14wklydw23pbj5980c5hrlwsj"; depends=[lpint Rcpp]; }; + IHSEP = derive2 { name="IHSEP"; version="0.3"; sha256="05rh22hlks3rx1l6xk7qyapk4jqnlsrzs0z9qlcl428shbzmzq9p"; depends=[lpint Rcpp]; }; IIVpredictor = derive2 { name="IIVpredictor"; version="0.1.0"; sha256="15361j8b60jj3bh8cjxs39d9bir1aywy9bd254s5w94cakhy0ld5"; depends=[lavaan R2jags]; }; ILS = derive2 { name="ILS"; version="0.2"; sha256="0lj3ripkaq6jn00lpxjihjhm8g1gbkppmb1y9kkrymphg80k1by7"; depends=[depthTools fda_usc lattice MASS multcomp]; }; ILSE = derive2 { name="ILSE"; version="1.1.7"; sha256="0jx0f7lk18k0wsypi4ynq1zqbb9hsmcmf0chxyrpqkadfqb6mgwr"; depends=[pbapply Rcpp RcppArmadillo]; }; IMD = derive2 { name="IMD"; version="1.0.2"; sha256="13l15gdwib09gs5bqga1hr5z9vym0f9jiki4il22mrzkhw34y2j8"; depends=[devtools dplyr Hmisc httr janitor readODS readr readxl rlang tibble tidyr]; }; IMEC = derive2 { name="IMEC"; version="0.2.0"; sha256="1k85pr6s6lysn53n59i8rcdhyg7r3il5avbckvvz43p6lh0fgxpy"; depends=[igraph IsingSampler qgraph]; }; - IMFData = derive2 { name="IMFData"; version="0.2.0"; sha256="1mlxpsbyvh1zi8ivdblbd58zfv5hflnknbasz5z8xk9911czrn6p"; depends=[httr jsonlite plyr]; }; IMIFA = derive2 { name="IMIFA"; version="2.1.8"; sha256="0rcyl3hkfp5rfkppzqh3zrq510n6y5x43mvv933cflaij9611d70"; depends=[matrixStats mclust mvnfast Rfast slam viridisLite]; }; IMIX = derive2 { name="IMIX"; version="1.1.4"; sha256="0xdf221l53i4kfln4xnqv2lv3yg3kajmnm5nyal1z25p22czcdl9"; depends=[crayon ggplot2 MASS mclust mixtools mvtnorm]; }; IMP = derive2 { name="IMP"; version="1.1"; sha256="0ilvgz2bngffyx6ifqqx1snsn6mmq7rx3wg44093yrviaw39qdfv"; depends=[dplyr ggplot2 shiny tidyr]; }; IMPACT = derive2 { name="IMPACT"; version="0.1.1"; sha256="0ai22gvmfj9j00cw742szfqqay63b5lmnszkwwdfdvidls43v0bm"; depends=[]; }; IMTest = derive2 { name="IMTest"; version="1.0.0"; sha256="0n0swbi051cr7mrjmszqg79hxa38ccyq69ws8c37ixwb0lpxmx48"; depends=[lme4 ltm MASS reshape2]; }; - IMak = derive2 { name="IMak"; version="2.0.1"; sha256="0spq7h9l2nnng1jiflpll8vbgmdhrpwi426v70qjslg5if1izcpm"; depends=[imager]; }; + IMak = derive2 { name="IMak"; version="2.1.0"; sha256="1972iwam1kkkb3107pq8jhmm3q0ypn92p519srzm82xnbf0m7828"; depends=[png]; }; IMmailgun = derive2 { name="IMmailgun"; version="0.1.2"; sha256="09acmi6xj186fb8nhj8q0nxmkp2p32a1l95glzvz84gax4xakhz8"; depends=[httr]; }; INCATome = derive2 { name="INCATome"; version="1.0"; sha256="1gbmcirs49ydmk5rg2vl5gdy39dfx9psw5mijibzjszcfjar3kqs"; depends=[genefilter limma multtest RankProd siggenes]; }; INLABMA = derive2 { name="INLABMA"; version="0.1-11"; sha256="0wzyb3c7zpksqz198kigi4rpblvk0rjamngmyabw5xdpizxdg6zi"; depends=[Matrix sp spdep]; }; INQC = derive2 { name="INQC"; version="2.0.5"; sha256="1gz7gyq5n2bmh18yrg29nz8kmdc0b35chwqxr6y2sggdm8j28akd"; depends=[evd gdata suncalc]; }; + INSPECTumours = derive2 { name="INSPECTumours"; version="0.1.0"; sha256="1jh6p3bgnrjixqzvjl0z3nv6lh01fx3x925h3na2pi3scqx5gx0s"; depends=[brms dplyr DT ggeffects ggplot2 knitr lme4 modelr pander plotly purrr readxl rlang rmarkdown shiny shinyalert shinyFeedback shinyjs shinytoastr shinyvalidate tidybayes tidyr tippy vroom waiter]; }; INSPIRE = derive2 { name="INSPIRE"; version="1.5"; sha256="0938l50yxnb5q628mp874ayx9ybvcjddis20y1hzm5cmlsg0hqhg"; depends=[missMDA]; }; INTRIGUE = derive2 { name="INTRIGUE"; version="0.1.0"; sha256="1l1vfl0m4iqniwp4bp1bfjpqhwahg341fpyxhryr0j8lypqaw7si"; depends=[dplyr rlist SQUAREM]; }; IOHanalyzer = derive2 { name="IOHanalyzer"; version="0.1.6.3"; sha256="1y8qvjm9mrdfxzgxyn5w8798gay0mf4l5lw7s845bcglpyr91q6p"; depends=[colorRamps colorspace data_table dplyr ggplot2 httr knitr magrittr plotly RColorBrewer Rcpp reshape2 shiny stringi]; }; @@ -2297,23 +2230,23 @@ in with self; { IPDFileCheck = derive2 { name="IPDFileCheck"; version="0.7.5"; sha256="1y0qq6q98lq1srsp1mlb7mr9zn2v4j7gpzim9fgh3xarw6a89i0h"; depends=[dplyr eeptools effsize gmodels gtsummary hash kableExtra lmtest lubridate stringr testthat tidyselect tidyverse zoo]; }; IPDfromKM = derive2 { name="IPDfromKM"; version="0.1.10"; sha256="1pqi6cshiha4gnra25fgpggyi42mn2hg25s9m9mh091rn5km44q0"; depends=[dplyr ggplot2 gridExtra readbitmap survival]; }; IPEC = derive2 { name="IPEC"; version="0.1.3"; sha256="0h1b9h33zxx23rj8c9790nsqykwhznavy8hfkgv9gx7nphrsy5ma"; depends=[MASS numDeriv]; }; + IPEDSuploadables = derive2 { name="IPEDSuploadables"; version="2.4.5"; sha256="1mi3sx9vj4z96jv9lqixfjcai0ij4dxw73lnayxni70p7wi5pcim"; depends=[dplyr lubridate magrittr purrr rlang stringr svDialogs tidyr]; }; IPLGP = derive2 { name="IPLGP"; version="2.0.0"; sha256="0vzppfc42p51a7rjg6w02w45kh0rymqjfgb6979g9pm35dpppbgz"; depends=[ggplot2 sommer]; }; IPMbook = derive2 { name="IPMbook"; version="0.1.3"; sha256="0wjzp3l7w4cp0g6c1q84l18pkb0sjjnspidxdv32pn7rqj7wsmcf"; depends=[abind]; }; IPPP = derive2 { name="IPPP"; version="1.1"; sha256="19ccs25fd56ns7ssi51w2jzjd4d57vyimwmfvf27mmigb537bd5y"; depends=[]; }; IPV = derive2 { name="IPV"; version="0.2.0"; sha256="0qkh4c865rlzzcj9j8bdwj9y57s8mahry7lxg2q61dqzb51nlvsn"; depends=[ggforce ggplot2 lavaan Matrix reshape2 stringr]; }; - IPWboxplot = derive2 { name="IPWboxplot"; version="0.1.0"; sha256="0lyqcjnbissick5hzwrx21pykq4pww9j0i03j0gy43awl1cq5qq8"; depends=[isotone]; }; + IPWboxplot = derive2 { name="IPWboxplot"; version="0.1.1"; sha256="07qvdflwmyy0406xkkgja31cggfv4pak2hhnhh8fwggj2zkj9z8n"; depends=[isotone]; }; IPWpn = derive2 { name="IPWpn"; version="0.1.0"; sha256="0glw8sb8jadnvznfj31l6lal0vqnmsmk96byinw7wy8avkz455fn"; depends=[dplyr MplusAutomation mvtnorm tibble tidyr tidyverse]; }; IQCC = derive2 { name="IQCC"; version="0.7"; sha256="1zalpmyywkrnci0jd8irakjhiqmr52zhj1sbxf9pz5c7wks2rdbc"; depends=[MASS miscTools qcc]; }; IRCcheck = derive2 { name="IRCcheck"; version="1.0.0"; sha256="035sx36qf5hdnc51h8251qwxfm30r8h2v2qs2x161ip4cqghw019"; depends=[corpcor GGMncv glmnet MASS Rdpack]; }; - IRISMustangMetrics = derive2 { name="IRISMustangMetrics"; version="2.4.4"; sha256="0pnqmzzzbyqdg5hy4jjmlw38cpi81gsphfs4bqwbhmx77dp7ib06"; depends=[dplyr IRISSeismic pracma RCurl seismicRoll signal stringr XML]; }; - IRISSeismic = derive2 { name="IRISSeismic"; version="1.6.4"; sha256="0flx6r6lnrd1gms5yyyv3xdg7zzz6kkbi1wrnlg6pyzpwc63xs1p"; depends=[pracma RCurl seismicRoll signal stringr XML]; }; + IRISMustangMetrics = derive2 { name="IRISMustangMetrics"; version="2.4.5"; sha256="1gcz9s7vxpvfxljkjn4f54m5cmiji4j3v2f7vk6wdc7hm904afzp"; depends=[dplyr IRISSeismic pracma RCurl seismicRoll signal stringr XML]; }; + IRISSeismic = derive2 { name="IRISSeismic"; version="1.6.5"; sha256="1jkay8q0kyra9pcsmkjv4fqcgbkk8cnzjnlwf1nkkwk2zpq0adqn"; depends=[pracma RCurl seismicRoll signal stringr XML]; }; IRTBEMM = derive2 { name="IRTBEMM"; version="1.0.7"; sha256="09siwm2shjb8hhk64r66fspzykzr2r0m011pv8qcl9k7g040mxpi"; depends=[]; }; IRTShiny = derive2 { name="IRTShiny"; version="1.2"; sha256="094ax94y6k5z4vlxfla2w19f57q0z32nwwd5npjbgmnkhvfhhl9v"; depends=[beeswarm CTT ltm psych shiny shinyAce]; }; IRdisplay = derive2 { name="IRdisplay"; version="1.1"; sha256="0awdiv4rr93y8jb1d64sm1iy37ywyniqm7w98yv6qm0zz47h7sw3"; depends=[repr]; }; IRexamples = derive2 { name="IRexamples"; version="0.0.1"; sha256="12x8wrbkrl2l38xwfb0pi911nq22qd5zgvhvkpbsn7h3lbhg3pqy"; depends=[DisImpact dplyr forcats ggplot2 ggthemes RSelenium rstanarm rvest survey twang]; }; IRkernel = derive2 { name="IRkernel"; version="1.3"; sha256="00qrmsywpzw2hfp88020zjaijma7q4hqm9h2cz53rywdjzywnzss"; depends=[crayon digest evaluate IRdisplay jsonlite pbdZMQ repr uuid]; }; ISAT = derive2 { name="ISAT"; version="1.0.5"; sha256="0xlq568spfz527jxbqamrn1j87hnasg0kp2bcyjycaghmhsc6zmg"; depends=[gtools stringr]; }; - ISBF = derive2 { name="ISBF"; version="0.2.1"; sha256="12mk4d0m5rk4m5bskkkng5j6a9dzh8l1d74wh8lnamq7kf9ai9if"; depends=[]; }; ISCO08ConveRsions = derive2 { name="ISCO08ConveRsions"; version="0.1.1"; sha256="1vqg28alpjb1m33hzh4ixfd6f3gzc6l9989gpszvl3ishki05xqf"; depends=[]; }; ISLR = derive2 { name="ISLR"; version="1.4"; sha256="1hr0r00m9y39gzb4q7nip07mhxmaly12zwmwkisyx641h0vcclbi"; depends=[]; }; ISLR2 = derive2 { name="ISLR2"; version="1.3-1"; sha256="1hmcpw3nrldxayklp0whlgd5xi1zap8j5g2231i5hp3lsqh6skg6"; depends=[]; }; @@ -2321,14 +2254,13 @@ in with self; { ISOcodes = derive2 { name="ISOcodes"; version="2022.01.10"; sha256="0gy7n5bgxnl4rawry0pg078bkks9lzsbsrwjq8q5cvxl4k3dwpdj"; depends=[]; }; ISOpureR = derive2 { name="ISOpureR"; version="1.1.3"; sha256="1ydhsh3v6n7prrg0dm7hsg8wx1244g791xnz1sjyhljhm31hgwc0"; depends=[futile_logger Rcpp RcppEigen]; }; ISOweek = derive2 { name="ISOweek"; version="0.6-2"; sha256="1f1h8pgjaa14cvaj8ldl87b4vslxwvyfj46m0hkylwp73sv3g2mm"; depends=[stringr]; }; - ISR = derive2 { name="ISR"; version="2022.3.28"; sha256="1zmibljal0jq0hvdpgkbpnq5f72jlxhgmzv575m2hqmw7f3mibs2"; depends=[MASS]; }; + ISR = derive2 { name="ISR"; version="2022.4.22"; sha256="0j31qicbpjgl0igmk37qg10zng31xk6w4dd1izz5pzjwb3w9qkli"; depends=[MASS]; }; ISRaD = derive2 { name="ISRaD"; version="1.7.8"; sha256="119vvxviimnvy6x63hijsgmj8w02ni1g30imv8v39rp17hklr6pc"; depends=[dplyr ggplot2 httr maps raster RCurl readxl tidyr writexl]; }; ISwR = derive2 { name="ISwR"; version="2.0-8"; sha256="1bay7na68awq68bw82dwhcfxp2d3di2dg33islq0mgrhd4sfdfza"; depends=[]; }; ITNr = derive2 { name="ITNr"; version="0.6.0"; sha256="0yxn3768819ph49bizprj3arrvz9rzhb45rkcpfivwfwlyf010yy"; depends=[blockmodeling circlize cowplot dplyr fastmatch GGally ggplot2 igraph intergraph maps network networkDynamic plyr RColorBrewer reshape2 sna tnet WDI]; }; ITRLearn = derive2 { name="ITRLearn"; version="1.0-1"; sha256="03xdbpn3qddcq9krdpnywd3xbzfh2viym2qqx6rcqs7w7bdhhlk6"; depends=[Formula kernlab]; }; ITRSelect = derive2 { name="ITRSelect"; version="1.0-1"; sha256="0llr4hrlbnb728j5rw7vd3r9qlqf571hrldnm72kicis5di2v5di"; depends=[Formula Matrix ncvreg Rglpk svMisc]; }; IVYplot = derive2 { name="IVYplot"; version="0.1.0"; sha256="1v739xlim3mcw09cyp4z3cbb25ipkpwm9h378fwy2ycp8lmq32gy"; depends=[plyr]; }; - Iboot = derive2 { name="Iboot"; version="0.1-1"; sha256="1fahh86kgv2axj2qg14n87v888sc0kb567s6zr3fh5zv361phwkq"; depends=[]; }; IceSat2R = derive2 { name="IceSat2R"; version="1.0.1"; sha256="0xmx6schcg03p1c7v86m8r7yh78gc5dgiqa1v1d3s030r787ds6a"; depends=[data_table doParallel foreach glue httr leafgl leaflet leaflet_extras leafsync lubridate lwgeom magrittr miniUI rnaturalearth rvest sf shiny units]; }; IgAScores = derive2 { name="IgAScores"; version="0.1.2"; sha256="0ckqjbn0xc894dc23gbaqzr6z6rl5h0k8gc5gjhbhwvrc2zlyfsp"; depends=[]; }; ImaginR = derive2 { name="ImaginR"; version="0.1.7"; sha256="12ypfrqw6xym84i1axd3h0qd2md96rc0glas3rgzpdhdyw4lbfmn"; depends=[imager jpeg]; }; @@ -2336,6 +2268,7 @@ in with self; { Immigrate = derive2 { name="Immigrate"; version="0.2.1"; sha256="0pnnvv63kkg7pgyblb1vlx54c6169n40fn58aypdy5xcnknabvxn"; depends=[pROC Rcpp]; }; ImpactEffectsize = derive2 { name="ImpactEffectsize"; version="0.6.2"; sha256="06dywikscwvigcw50h9yd3fjf3h25ymkxphwy8r6n3v2nl9iba3m"; depends=[caTools matrixStats parallelDist Rcpp]; }; ImportExport = derive2 { name="ImportExport"; version="1.3"; sha256="07i7p9xha1f23r07lw87ak13hd4wavdvwh8vb8sg2gyvnpa5njwp"; depends=[chron gdata haven Hmisc readxl RODBC writexl]; }; + ImportanceIndice = derive2 { name="ImportanceIndice"; version="0.0.1"; sha256="0v7hmanq6fvif8jnwrrmr5bha6l80i4mb3b9mk3zxvl2p1kvbbmg"; depends=[crayon]; }; ImputeRobust = derive2 { name="ImputeRobust"; version="1.3-1"; sha256="1zvwlpffpm4gqysz57clf8jkqr72yjbzx90pdy95la51m0b6cdbd"; depends=[extremevalues gamlss gamlss_dist lattice mice purrr]; }; InDisc = derive2 { name="InDisc"; version="1.1.0"; sha256="0halx4m503b9d4vk5y0qmx6qyvc6lwjr4ys4xdcj6bnzv8wi8ymw"; depends=[matrixStats psych]; }; InPosition = derive2 { name="InPosition"; version="0.12.7.1"; sha256="0d9c7dwaa1v0j8p5ff9223fc2gkbmbvyqylma2d8l4x5m92jmkv0"; depends=[ExPosition prettyGraphs]; }; @@ -2348,8 +2281,7 @@ in with self; { IndexNumR = derive2 { name="IndexNumR"; version="0.5.0"; sha256="15rjhzwygs4an51lxn66jlfww4j361b1jw4a6q3dz31bmlc9i5pg"; depends=[]; }; IndexNumber = derive2 { name="IndexNumber"; version="1.3.2"; sha256="0ff6fnkgbfwn3sasglr1aygvm9bawrvcj432xgka1vk28qnns0if"; depends=[]; }; IndianTaxCalc = derive2 { name="IndianTaxCalc"; version="1.0.2"; sha256="1fxw884wj9n8drk2xz3rgr4f7b4fckh5firrf5gdz6d1nk9hdvc1"; depends=[]; }; - InfDim = derive2 { name="InfDim"; version="1.0"; sha256="0rh3ch0m015xjkxy08vf9pc6q7azjc6sgicd2j6cwh611pqq39wq"; depends=[]; }; - InferenceSMR = derive2 { name="InferenceSMR"; version="1.0"; sha256="13d3v8kyk6br33659jgql6j1nqmnd8zszqrwfw2x3khkiqzgdmhk"; depends=[survival]; }; + InferenceSMR = derive2 { name="InferenceSMR"; version="1.0.1"; sha256="1dxq1dsmrx9kx8vqxlbg22a91iv4skck4jhmmfk3kxi5znl121zc"; depends=[survival]; }; InfiniumPurify = derive2 { name="InfiniumPurify"; version="1.3.1"; sha256="0yqah4rwpishas0xyv5a7cn4v18brj33cd7f494g21b9brggafq1"; depends=[matrixStats]; }; Inflation = derive2 { name="Inflation"; version="0.1.0"; sha256="0ikhsslbg32kr9vcaxq8qwaa7ahiwvq91xwv53550wci2vyzmybp"; depends=[seasonal]; }; Inflect = derive2 { name="Inflect"; version="1.1.0"; sha256="09904nn33libjv29n74n5nq1hj6ka8a4h3jllwpbxk9hsmnlmf9h"; depends=[data_table ggplot2 optimr plotrix readxl tidyr UpSetR writexl]; }; @@ -2360,7 +2292,7 @@ in with self; { InformativeCensoring = derive2 { name="InformativeCensoring"; version="0.3.5"; sha256="1c8mfb82px9z27lc7br514mcbl65q7lfa3df9w3vvnk5g7ljswha"; depends=[boot dplyr survival]; }; Infusion = derive2 { name="Infusion"; version="1.5.1"; sha256="02rlzil1qzgyxrf87mdvxdm0mgjnljk211j9c7hh72h0mq5rlg0d"; depends=[blackbox foreach mvtnorm numDeriv pbapply proxy spaMM viridis]; }; InjurySeverityScore = derive2 { name="InjurySeverityScore"; version="0.0.0.2"; sha256="0g52cksa774in18ykrym61l3my9zm343bgsq5mg7mki9x65xd35z"; depends=[dplyr rlang tidyr]; }; - InspectChangepoint = derive2 { name="InspectChangepoint"; version="1.1"; sha256="0zrfyzz3l9jff7044dhrjv8rp8f258fz993ycyxyd29nd7x9n9nj"; depends=[MASS]; }; + InspectChangepoint = derive2 { name="InspectChangepoint"; version="1.2"; sha256="084ji77z0dnbjrhy6z40kjbblsgk3z00z256pfknkqxd3v7sawvc"; depends=[MASS]; }; IntCal = derive2 { name="IntCal"; version="0.3.0"; sha256="1sf25dkrnww0nqqhciadhak08n27l39ipczkjsbi7z3sn2npj50b"; depends=[]; }; IntLik = derive2 { name="IntLik"; version="1.0"; sha256="13ww5bsbf1vnpaip0w53rw99a8hxzziibj7j66cm31jmi8l6fznf"; depends=[maxLik]; }; IntNMF = derive2 { name="IntNMF"; version="1.2.0"; sha256="09qzyvv7d4wr68qrlhcd4ivr65is3mypv1vaxpswwcjmcmyr4gzp"; depends=[cluster InterSIM MASS mclust NMF]; }; @@ -2371,7 +2303,6 @@ in with self; { InterVA4 = derive2 { name="InterVA4"; version="1.7.6"; sha256="02fci1p8im8jpalv1mbrhrwhvpi23mzhwhpd1knpxyv7h6l9x0kg"; depends=[]; }; InterVA5 = derive2 { name="InterVA5"; version="1.1.3"; sha256="08cnhbq1048z7qcvvj0d1br7d8jljzf48ci94aixs0y0vs8lgvvz"; depends=[curl readxl]; }; Interact = derive2 { name="Interact"; version="1.1"; sha256="1g9zhafdpr7j410bi8p03d8x9f8m3n329x8v01yk15f65fp7pl1d"; depends=[]; }; - InteractiveIGraph = derive2 { name="InteractiveIGraph"; version="1.0.6.1"; sha256="0srxlp77xqq0vw2phfv7zcnqswi2i5nzkpqbpa5limqx00jd12zy"; depends=[igraph]; }; Interatrix = derive2 { name="Interatrix"; version="1.1.3"; sha256="1pjyfg5p6081hng9h6wcmfnlfkcs300c3x9ksdj01587b97ph9s1"; depends=[MASS]; }; InterfaceqPCR = derive2 { name="InterfaceqPCR"; version="1.0"; sha256="12nmkv6qnzh2dnbhk1656dla6mrznh24gqblmn4xai7wg4p92fbx"; depends=[plyr reshape2 tkrplot xlsx]; }; InterpretMSSpectrum = derive2 { name="InterpretMSSpectrum"; version="1.2"; sha256="1iaw4i14l2vp1f163g2q4pwv9cnqrx14ik4s8zw0iha4zwcrc3ja"; depends=[DBI doParallel enviPat foreach plyr Rdisop RSQLite]; }; @@ -2386,7 +2317,6 @@ in with self; { IsingFit = derive2 { name="IsingFit"; version="0.3.1"; sha256="1prdzzp15klkdy72379bjksdgxr15nk16pqm35w95341cddxchc7"; depends=[glmnet Matrix qgraph]; }; IsingSampler = derive2 { name="IsingSampler"; version="0.2.1"; sha256="1cs4vk53b5fy6kywvycfjf62571yx92nvgp5i8hlvms1362ir7gv"; depends=[dplyr magrittr nnet plyr Rcpp]; }; Iso = derive2 { name="Iso"; version="0.0-18.1"; sha256="0vy6jdyvp751430sf2f690yhasjr70cpk3p3lnaaxjq3fs5gg99g"; depends=[]; }; - IsoCI = derive2 { name="IsoCI"; version="1.1"; sha256="0r7ksfic6p2v95c953s4gbzzclk4ldxysm8szb8xba1w0nx2izil"; depends=[KernSmooth]; }; IsoCheck = derive2 { name="IsoCheck"; version="0.1.0"; sha256="06g0srp14yiha95mbmifaqf5yr5ppjnc20nyr237ah3l776mhsif"; depends=[dplyr gtools plyr]; }; IsoCorr = derive2 { name="IsoCorr"; version="1.0"; sha256="0rhbclbpfd9d0dawbwwprlzx2j9k59gsmrb11yabiv5305b7vpx8"; depends=[]; }; IsoGene = derive2 { name="IsoGene"; version="1.0-24"; sha256="0flm0mszankvl3aizwsazyhvz2xkr4gfqiqywpc0r1swqj19610r"; depends=[affy Biobase ff Iso xtable]; }; @@ -2397,10 +2327,9 @@ in with self; { IsotopeR = derive2 { name="IsotopeR"; version="0.5.4"; sha256="0xgha5alh5y5qfz00rl73q4xlamnmrwij7kckljmy6zgrlrdnl6x"; depends=[colorspace ellipse fgui plotrix runjags]; }; IxPopDyMod = derive2 { name="IxPopDyMod"; version="0.2.0"; sha256="0qnxf9a0d9lmvna5rzmddp5gsq9scpk9aw0kamhbmrxbxaxm4q9l"; depends=[dplyr ggplot2 igraph magrittr readr rlang stringr tibble tidyr yaml]; }; JADE = derive2 { name="JADE"; version="2.0-3"; sha256="1fj2wawx5ac1fvlp28naqha0i17f1sb47j2qqzgccvx17ycqmmjn"; depends=[clue]; }; - JASPAR = derive2 { name="JASPAR"; version="0.0.1"; sha256="0wiyn7cz45hwy9zkvacx28zdrg78q6715cg4r9xgcb39q25s0dcy"; depends=[gtools]; }; JBrowseR = derive2 { name="JBrowseR"; version="0.9.0"; sha256="0wwcz5dzjmss2rdqdfxrxbaj01f9avh7h5clzl9aqvql2g0gllbl"; depends=[cli dplyr htmltools htmlwidgets httpuv ids jsonlite magrittr mime reactR readr stringr]; }; JCRImpactFactor = derive2 { name="JCRImpactFactor"; version="1.0.0"; sha256="1i7853i8k03nq7ax9rypm9qcl5qgyddblgbfjp3yxi1s3a6bkwk1"; depends=[stringr]; }; - JFE = derive2 { name="JFE"; version="2.5.2"; sha256="15y8l2cdw8g4abwiv1ddxb42kcpajp0azzpbqcj4h95ibr4j61i2"; depends=[caret fPortfolio magrittr tcltk2 xts zoo]; }; + JFE = derive2 { name="JFE"; version="2.5.3"; sha256="1k9z6jq07gpq25imk8fx0wyh69z626mipc1fb7z67h4iygyznwjv"; depends=[fPortfolio tcltk2 xts zoo]; }; JFM = derive2 { name="JFM"; version="1.0"; sha256="08655vgfb2ll8hwjsj5lsw4849rahn3blisdqn8bwfhclrwd24xn"; depends=[MASS randomcoloR Rcpp RcppArmadillo rgl RockFab Rvcg]; }; JGEE = derive2 { name="JGEE"; version="1.1"; sha256="078348n623hlyc3n9yh67vv5acsnxapmbwybvrb1i7kawmqw5msi"; depends=[gee MASS]; }; JGL = derive2 { name="JGL"; version="2.3.1"; sha256="02p9z32f8j60wnh1szkjr2zfa9zwyw0gqinpsvll4dymf8cjawpw"; depends=[igraph]; }; @@ -2420,7 +2349,7 @@ in with self; { JSUparameters = derive2 { name="JSUparameters"; version="1.0.0"; sha256="0jikzazdp6id72d5csplhsa2yrm9cb02f00bfzriyhgfl43v09mh"; depends=[]; }; JSconsole = derive2 { name="JSconsole"; version="0.1.0"; sha256="1jpa48xb7hh4ap25sqrl67rzqra53qhcfwpfgs6hmpjnrld8n3ha"; depends=[rstudioapi V8]; }; JSmediation = derive2 { name="JSmediation"; version="0.2.0"; sha256="1js9qhjfycwwipaxf64zpgwbbqyccj9zv4kipd6r82l3rx9ck8mh"; depends=[broom data_table dplyr glue knitr magrittr MASS purrr rlang tibble]; }; - JWileymisc = derive2 { name="JWileymisc"; version="1.2.0"; sha256="0c140kcq0fw91r4g33xri8yxms0nk291zi708h00pszliwpg4qhq"; depends=[data_table emmeans extraoperators ggplot2 ggpubr ggthemes lavaan lme4 MASS mgcv mice multcompView psych quantreg rms robustbase VGAM]; }; + JWileymisc = derive2 { name="JWileymisc"; version="1.3.0"; sha256="1g1mpdxdl27y5ixyfa0fr0zzs0wmvkc2ddnc1bmjyk8xbf2kpd7y"; depends=[data_table digest emmeans extraoperators fst ggplot2 ggpubr ggthemes lavaan lme4 MASS mgcv mice multcompView psych quantreg rms robustbase VGAM]; }; JacobiEigen = derive2 { name="JacobiEigen"; version="0.3-4"; sha256="1jm63w2jn89pk725x3d9myq010mb0g5ir8vhv29mkiwgrqig6iw1"; depends=[Rcpp]; }; JamendoR = derive2 { name="JamendoR"; version="0.1.1"; sha256="0rrfbci413mqq53p5fyj8rjangdx21iyin6hzqkxyrxrv3n5mfbx"; depends=[dplyr httr jsonlite]; }; JavaGD = derive2 { name="JavaGD"; version="0.6-4"; sha256="1q48iykjzy22avmx0yy03vv9c7h87qsphg5hsrzfmx5gvck61m06"; depends=[rJava]; }; @@ -2434,13 +2363,11 @@ in with self; { JointAI = derive2 { name="JointAI"; version="1.0.3"; sha256="1dg685lpqxs1a2mf584a0l0a6zz6bkp06n3ydvgnvngrclhv18zj"; depends=[coda foreach future MASS mathjaxr mcmcse rjags rlang survival]; }; JointModel = derive2 { name="JointModel"; version="1.0"; sha256="1zgs5c7saqyqxvxmhw5sxy5w67abq344aid6igw1da05bfy2az6h"; depends=[lme4 statmod survival]; }; JointNets = derive2 { name="JointNets"; version="2.0.1"; sha256="18n9dsy0w0nh7dznp6gw6g5fhhjhf5y589nb49hri0721kq1h3rb"; depends=[brainR igraph JGL lpSolve MASS misc3d oro_nifti pcaPP rgl shiny]; }; - Julia = derive2 { name="Julia"; version="1.3.3"; sha256="0x38wzxh1ca5szh2ffhwp9vfpbnjxkazf3a53qdsa2n0gl921r5z"; depends=[]; }; + Julia = derive2 { name="Julia"; version="1.3.4"; sha256="0fv2qdxn0nqr6i7y3q8kjqnyb66k63k4jcdrs0xq2h2rw5gxpfir"; depends=[]; }; JuliaCall = derive2 { name="JuliaCall"; version="0.17.4"; sha256="0ys2sm8yf41zqkvwz9cavkqk8br338w93wq0h8lggfq4q0l85n21"; depends=[knitr Rcpp]; }; JuliaConnectoR = derive2 { name="JuliaConnectoR"; version="1.1.1"; sha256="0chbax02l1p3qr0skvnxw1b8g7kf6s7sk2f3gj0ddl5kj6ls1p5n"; depends=[]; }; - JumpTest = derive2 { name="JumpTest"; version="1.1"; sha256="0y375m5477nq0ybnjmfnd8hi45d8jmdnprqvw5f70llpd7bcghh0"; depends=[MASS Rcpp RcppEigen]; }; JumpeR = derive2 { name="JumpeR"; version="0.3.0"; sha256="1bh2448462xgiv4k19qgm3dc4wa00ad8v3l6v22pg0l5kpmlx5i2"; depends=[dplyr magrittr pdftools purrr rvest stringr SwimmeR xml2]; }; JustifyAlpha = derive2 { name="JustifyAlpha"; version="0.1.1"; sha256="0bd7sn4sn95kal5q2x1q78fsk1mhakr5fax3z6ny2yda2h266af9"; depends=[BayesFactor ggplot2 pwr qpdf shiny shinydashboard stringr Superpower]; }; - KANT = derive2 { name="KANT"; version="2.0"; sha256="169j72pmdkcj6hv8qgmc02aps0ppvvl1vnr1hzrb1gsf7zj7bs3y"; depends=[affy Biobase]; }; KCSKNNShiny = derive2 { name="KCSKNNShiny"; version="0.1.0"; sha256="13gzqf3g7vj8cc0xm5902q7lad2way8d0ri1fs01dnv97wmwbxvn"; depends=[caret dplyr FNN rhandsontable shiny]; }; KCSNBShiny = derive2 { name="KCSNBShiny"; version="0.1.0"; sha256="1lv5r9qyvr3dnvcs00jyam0whv64qmv5vphhijlar1xa1g1llwqr"; depends=[caret dplyr e1071 rhandsontable shiny]; }; KENDL = derive2 { name="KENDL"; version="1.1"; sha256="05vsh3x0li964a485q3n19c7fahcprvg1bnrvffagkxf8w1iz153"; depends=[]; }; @@ -2494,12 +2421,11 @@ in with self; { Kurt = derive2 { name="Kurt"; version="1.1"; sha256="0fmd3m6pgsyf614wf11yclxl9zsac5jrffci5c2514wvs1slqw1p"; depends=[expm labstatR matrixcalc polynom]; }; L0Learn = derive2 { name="L0Learn"; version="2.0.3"; sha256="1lfbggh2bal8a6krg262v2pd90cd49aaxmz7crcdws4mx82srzmk"; depends=[ggplot2 MASS Matrix Rcpp RcppArmadillo reshape2]; }; L1mstate = derive2 { name="L1mstate"; version="1.0.1"; sha256="1nkx2h1fl32h0sx03f23x3sfxj5mnarbnpy0wmjji90chff7m2vz"; depends=[colorspace MASS Matrix mstate Rcpp RcppEigen]; }; - L1pack = derive2 { name="L1pack"; version="0.38.196"; sha256="1cayk11wp6f2vpyz14j7my8wpd8hny2mxpjsdsw4wlz0mmwml70l"; depends=[fastmatrix]; }; + L1pack = derive2 { name="L1pack"; version="0.40"; sha256="0c30kmg7b447wkppbp1qbdvvrpq1b207wqbarrh0l4bfd4xkc2ig"; depends=[fastmatrix]; }; L2DensityGoFtest = derive2 { name="L2DensityGoFtest"; version="0.4.0"; sha256="0gxn8w6dycnvi30zxwz60s0jmsrcy0f7nwssqlm14q418mwn21j2"; depends=[boot fGarch kedd nor1mix]; }; L2E = derive2 { name="L2E"; version="1.0"; sha256="1y1cm4fsb1yf9nqvhz7i2bg3f8ds461bkn3cbrx87d66j43pdi2f"; depends=[cobs isotone]; }; - LA = derive2 { name="LA"; version="0.1.3"; sha256="0yvgrm64g910h4zgavinj6ri5gvy5yjd3ydr9gqm7qdj05dsgz66"; depends=[LHD]; }; + LA = derive2 { name="LA"; version="2.1"; sha256="06mfxz283ifkblhxa35wrkkzbndxv55sh6ckrp92nb4nvdh1zlvy"; depends=[Rcpp RcppArmadillo]; }; LAGOSNE = derive2 { name="LAGOSNE"; version="2.0.2"; sha256="0fhy590mnkypknxk34c7vrhwrgsjrkf1f0yvfbjy1kvzvla0hjkl"; depends=[curl dplyr lazyeval magrittr memoise progress purrr qs rappdirs rlang sf stringr tibble tidyr]; }; - LAM = derive2 { name="LAM"; version="0.5-15"; sha256="18p8w2n2k4788vpxhdxnmcafwj7a5bvihk530fiynkra3xrn1cr4"; depends=[CDM Rcpp RcppArmadillo sirt]; }; LARF = derive2 { name="LARF"; version="1.4"; sha256="1sqib7smgjacn07ishwls1nlbvcb6fpp1vhrjwf9g4xf9jk30i8h"; depends=[Formula]; }; LARGB = derive2 { name="LARGB"; version="0.1.0"; sha256="0ksyagp4wy1rm7kll6rgdx2735k6ywlaf08d6yys9cv090rpc8l3"; depends=[dplyr imager]; }; LARisk = derive2 { name="LARisk"; version="1.0.0"; sha256="13d008v8aypqlx35bf16y7rcfcv5qnbsi8q0zpfcl03rzxmqpb8b"; depends=[dplyr Rcpp]; }; @@ -2522,11 +2448,10 @@ in with self; { LDPD = derive2 { name="LDPD"; version="1.1.2"; sha256="1khdx8vwlpliyjc4sxcdiywbxl8lc9f5s3457vcip1j8dv537lbm"; depends=[MASS nleqslv]; }; LDRTools = derive2 { name="LDRTools"; version="0.2-1"; sha256="05srfyplsypi3whfa71lx7pnad23irpf0p7rxmrpv28jgdmrz6wf"; depends=[]; }; LDcorSV = derive2 { name="LDcorSV"; version="1.3.3"; sha256="0wr8i9q9p48vpcia8v3rd8bb2pfijr9r6kg9x26k4wncpg7n83cp"; depends=[]; }; - LDheatmap = derive2 { name="LDheatmap"; version="1.0-4"; sha256="1jp578cf29qcgx95w10lpymlwx2pgjsf0nypwkl9b8g635gkisq7"; depends=[genetics Rcpp snpStats]; }; - LDlinkR = derive2 { name="LDlinkR"; version="1.1.2"; sha256="1cfavm4sazskrrb7kfrw0ni8ls8cdqxdwxyjhmvxf1ln470bc8zg"; depends=[httr]; }; + LDheatmap = derive2 { name="LDheatmap"; version="1.0-6"; sha256="0gr99kys1ahyl8s6cbj6rmh4vwid8kn92lcbjnwh0ahb73m2xjjc"; depends=[genetics Rcpp snpStats]; }; + LDlinkR = derive2 { name="LDlinkR"; version="1.2.0"; sha256="08wfsqgzg7biccq016gsyf2hcwigrknz51irpmrmjbxlr8q54gdq"; depends=[httr]; }; LEANR = derive2 { name="LEANR"; version="1.4.9"; sha256="053xy13ys5hibafdnbkwqdk36hw7dhanp4frfacpfpn5f9nfh95r"; depends=[foreach igraph]; }; LEAP = derive2 { name="LEAP"; version="0.2"; sha256="1yrhanxvr7krvllqzv17qkc4wvmd7mgl57am8sn53773dbfipfc4"; depends=[]; }; - LEAPFrOG = derive2 { name="LEAPFrOG"; version="1.0.7"; sha256="0z9ahkk4qzc45h1r806frv9cd84vvshvn5mr84gx7qdxljfkfq6h"; depends=[alabama MASS]; }; LEGIT = derive2 { name="LEGIT"; version="1.4.0"; sha256="1ynzm630c3wl8y9j058qgdkss5ngmmylhdw13032v53pss0vwlx3"; depends=[boot doSNOW foreach formula_tools glmnet Hmisc iterators lme4 pROC RColorBrewer snow]; }; LFApp = derive2 { name="LFApp"; version="1.3"; sha256="0jyzn5k1h629ybx8f09vsnvdmc2qbigaqy6rrcica2sh5if2b4w4"; depends=[DT EBImage fs ggplot2 mgcv shiny shinyFiles shinyjs shinyMobile shinythemes]; }; LFDR_MLE = derive2 { name="LFDR.MLE"; version="1.0.1"; sha256="0ykcd24w71zxb53nch041g7xh83gmg1ia3sysdpn0yzkhm0w7cdl"; depends=[]; }; @@ -2536,9 +2461,8 @@ in with self; { LGRF = derive2 { name="LGRF"; version="1.0"; sha256="1kdx6y55aa9n6v43zfz6jk8amvvxbx79sqm1jx4ihgkpgcdglan7"; depends=[CompQuadForm geepack SKAT]; }; LHD = derive2 { name="LHD"; version="1.3.3"; sha256="0wqjf0wl0l3kq7i030qjzdavsn75jmghjvzk76b9d22fhk356yh8"; depends=[numbers]; }; LIC = derive2 { name="LIC"; version="0.0.2"; sha256="01wqx3mqq0rz4m0zp07ln6d396fz7xcwm37kn8js26ravyhiipdq"; depends=[]; }; - LICORS = derive2 { name="LICORS"; version="0.2.0"; sha256="0p9y21k1mj1v397jpb5g6jiw7rpzbyfwr4kv2rp3lyxyasy2ykf0"; depends=[fields FNN locfit Matrix mvtnorm RColorBrewer zoo]; }; LIHKGr = derive2 { name="LIHKGr"; version="0.1.0"; sha256="16yyalsdbaxncgfabsz2q2fixzmwyd62gvnvnxazf4vlypp6xlqz"; depends=[dplyr magrittr purrr R6 raster RSelenium rvest tibble xml2]; }; - LIM = derive2 { name="LIM"; version="1.4.6"; sha256="03x1gnm06bw1wrzc01110bjzd2mvjdzbc2mbrazh22jrmb32w5d8"; depends=[diagram limSolve]; }; + LIM = derive2 { name="LIM"; version="1.4.7"; sha256="0d9bgyd0mnag8wds993dsvlbpkhyakydlzwc3nghxzv2n8504hjj"; depends=[diagram limSolve]; }; LINselect = derive2 { name="LINselect"; version="1.1.3"; sha256="1qxqwph5ja2kf1s4ggsv8w6hjgf9mr53a0gahhjix2v78309z42g"; depends=[elasticnet gtools MASS mvtnorm pls randomForest]; }; LIStest = derive2 { name="LIStest"; version="2.1"; sha256="1gk253v3f1jcr4z5ps8nrqf1n7isjhbynxsi9jq729w7h725806a"; depends=[]; }; LKT = derive2 { name="LKT"; version="1.1.0"; sha256="18dphv8rgdf3plci4i57hdryra43mvaifr4xh88ckddza42a3af7"; depends=[data_table glmnet glmnetUtils LiblineaR lme4 Matrix SparseM]; }; @@ -2546,10 +2470,10 @@ in with self; { LLSR = derive2 { name="LLSR"; version="0.0.3.1"; sha256="0nci8p3gw35a3ifwrq7r2jih718p2iwmmh3495qnh0fk304y7kbi"; depends=[crayon digest dplyr ggplot2 minpack_lm nleqslv openxlsx rootSolve svDialogs svglite]; }; LMERConvenienceFunctions = derive2 { name="LMERConvenienceFunctions"; version="3.0"; sha256="0jg889qh5a9wdi01yiw6z7kivs9dzh5dcq39f4zifdpqzglhshzb"; depends=[fields LCFdata lme4 Matrix mgcv]; }; LMMELSM = derive2 { name="LMMELSM"; version="0.1.0"; sha256="1wrda19629k7fg3rryk9sf16h1w5915cifv7iiqqg64k8w1vwnaj"; depends=[BH Formula loo MASS nlme Rcpp RcppEigen rstan rstantools StanHeaders]; }; - LMMsolver = derive2 { name="LMMsolver"; version="1.0.1"; sha256="0lak467fhb34xc7k8hfg48zjicf4dgyrgkm59gwph22fdixs6v6f"; depends=[agridat ggplot2 maps Matrix Rcpp sp spam]; }; + LMMsolver = derive2 { name="LMMsolver"; version="1.0.2"; sha256="1y2i1y5fp1iq4vyaz7v5bkn4x2745wizl67m1fcyvr3fb4h533ph"; depends=[agridat ggplot2 maps Matrix Rcpp sp spam]; }; LMMstar = derive2 { name="LMMstar"; version="0.5.4"; sha256="1n92qfg3hixdik95gylbbckc66hajqwsc15k221vrvxwdl56a16q"; depends=[emmeans ggplot2 lava Matrix multcomp nlme numDeriv reshape2 sandwich]; }; LMN = derive2 { name="LMN"; version="1.1.2"; sha256="17xsf61dnpvbhxwbgqjj9k26xwd9s90vfzv2ymj1i2g5zdd6w9k7"; depends=[Rcpp RcppEigen SuperGauss]; }; - LMest = derive2 { name="LMest"; version="3.0.3"; sha256="1kw59acjq1cax52dq8dqb5nzysil5l3s26i1h89q0smrkirscssx"; depends=[diagram Formula MASS mclust mix MultiLCIRT mvtnorm scatterplot3d]; }; + LMest = derive2 { name="LMest"; version="3.0.4"; sha256="07afw093mjgccpkmjdy3sv73farq7q0bx4s7sz11h3wd4i6rw0vn"; depends=[diagram Formula MASS mclust mix MultiLCIRT mvtnorm scatterplot3d]; }; LMfilteR = derive2 { name="LMfilteR"; version="0.1.3"; sha256="0c27154jghfl83n3sn26pr8mjcybrq02glvnjcx8hllrmz4gmnmi"; depends=[MASS]; }; LMoFit = derive2 { name="LMoFit"; version="0.1.6"; sha256="10xiaa5h8c0sq9z70yjs29z8jnjyqgybdv33d6s2100h3n46jd31"; depends=[ggplot2 lmom pracma sf]; }; LNIRT = derive2 { name="LNIRT"; version="0.5.1"; sha256="0w32qvz5mhzg6f8050p57v26amn6d2il2icjfiypf7yi3gsx7w09"; depends=[MASS]; }; @@ -2579,12 +2503,11 @@ in with self; { LRTH = derive2 { name="LRTH"; version="1.3"; sha256="08vakwb7ca7956gifynzijka441yyx0wd5bq5jfhz56lzcxgfb99"; depends=[]; }; LRcontrast = derive2 { name="LRcontrast"; version="1.0"; sha256="0fs06p853r42nws2camvs87py39hb1ssxhfm6d5n9kkq81snfx4q"; depends=[DoseFinding]; }; LS2W = derive2 { name="LS2W"; version="1.3.4"; sha256="1h4vvl1gfxkdjmy6syl0gf4fv03xxxw82cxwvy10b40sf20lwmnv"; depends=[MASS wavethresh]; }; - LS2Wstat = derive2 { name="LS2Wstat"; version="2.1-2"; sha256="1rgca2np80m0jqdsp69xys3h6x1sz0jirl3gmww8mcls5gk4v30v"; depends=[LS2W matrixStats RandomFields spdep]; }; - LSAfun = derive2 { name="LSAfun"; version="0.6.1"; sha256="1q43ds1779w4m4al8brqj4h4y7ys5q5ysw7jbdrxdrw4lwdh7qlf"; depends=[lsa rgl]; }; + LS2Wstat = derive2 { name="LS2Wstat"; version="2.1-4"; sha256="1y5q5sqzx3iwxdmxf6yz5c3hbw7sihxgr8sibr0v8s9dc6r4a2sf"; depends=[LS2W matrixStats spdep]; }; + LSAfun = derive2 { name="LSAfun"; version="0.6.2"; sha256="0x3l184wh804glyk5ww448jk2lw0jx20gknc28vz955r9afdd5xx"; depends=[lsa rgl]; }; LSAmitR = derive2 { name="LSAmitR"; version="1.0-2"; sha256="15qyij193scrvc1ghcssr6qdzxc4l4qh199s09bz5hvr62zwfdgb"; depends=[Hmisc lme4]; }; - LSC = derive2 { name="LSC"; version="0.1.5"; sha256="1nlnwqb24sbgvl96azh8a833ij5xknjr2wr8shs59lm2n63a3ql9"; depends=[fields gam LICORS Matrix RColorBrewer]; }; LSD = derive2 { name="LSD"; version="4.1-0"; sha256="17pbdlcbhzf3v7l42mjikln1ga5xjp5r78gjg6a88iahk0lwwlvm"; depends=[]; }; - LSDinterface = derive2 { name="LSDinterface"; version="1.2.0"; sha256="00adw2cdfcfnp2f3i31fcm531iw9ik9csfhygd2171a32rdkj752"; depends=[abind boot TSdist]; }; + LSDinterface = derive2 { name="LSDinterface"; version="1.2.1"; sha256="0zp7bgdbcah6hsfqbz7lq6f7g8xcqhjsr7pjpwjf9brnmy0l7xki"; depends=[abind boot TSdist]; }; LSDsensitivity = derive2 { name="LSDsensitivity"; version="1.2.0"; sha256="0fi3k5j3si85p95b40jp6fqfsy7qay0xf3sjq6a0pf4j7j59agb3"; depends=[abind car DiceKriging diptest kSamples lawstat LSDinterface randtoolbox rgenoud sensitivity tseries]; }; LSE = derive2 { name="LSE"; version="1.0.0"; sha256="01qj0zasv7dbwg0qxryz1d5jp4rapvnm9i6a4jd7c4pxqdm11j7y"; depends=[MASS pracma]; }; LSMRealOptions = derive2 { name="LSMRealOptions"; version="0.2.1"; sha256="0paa5yahpyr8jpgy8aqk2fcixdny6ip09vqm8varvpiqfxrjd6ww"; depends=[]; }; @@ -2596,7 +2519,8 @@ in with self; { LSVAR = derive2 { name="LSVAR"; version="1.2"; sha256="0lhx9a5l3s2c5isd3fhvxxfdazdxddpkg07hk4rckvhmxln7j1dj"; depends=[igraph mvtnorm pracma]; }; LSWPlib = derive2 { name="LSWPlib"; version="0.1.0"; sha256="1z4lcpmbm3wdzbi04flvspkimk4jfhjqi5pd0ab4pbb0ii1z26hs"; depends=[waveslim wavethresh]; }; LSX = derive2 { name="LSX"; version="1.1.1"; sha256="0dmxxqy0yjyif3w3dxfxyfkmnyvxfrjgr4mvy41cw5smkrhh7b49"; depends=[digest ggplot2 ggrepel irlba locfit Matrix proxyC quanteda quanteda_textstats reshape2 rsparse RSpectra rsvd stringi]; }; - LTPDvar = derive2 { name="LTPDvar"; version="1.2"; sha256="0r9v5g5y9n85jdcvm7zpapm73ism48m3mmybpcmgcs028h2ndv7v"; depends=[]; }; + LTASR = derive2 { name="LTASR"; version="0.0.1"; sha256="1y95w1ywfrlmmgbfzqc2i1rq0y097l35k6mqiskf25yqrmyf9n1x"; depends=[dplyr knitr lubridate magrittr purrr readr rlang stringr tidyr XML zoo]; }; + LTPDvar = derive2 { name="LTPDvar"; version="1.2.1"; sha256="0sdsdx71mpian7gfw7brkzyjjr7bai7dsdifwnib3jpq9p7w7n84"; depends=[]; }; LTRCforests = derive2 { name="LTRCforests"; version="0.5.5"; sha256="0f0am4wydk4wqiwjzxj2ibdkp5sd47qam4218nn0489knkvas3s7"; depends=[ipred partykit prodlim survival]; }; LTRCtrees = derive2 { name="LTRCtrees"; version="1.1.1"; sha256="1k16m2fpwn8m4dvm1b82srf3bgkvkwf6kcjpwjgkdappifc7p5m8"; depends=[icenReg Icens interval inum partykit rpart survival]; }; LUCIDus = derive2 { name="LUCIDus"; version="2.1.5-1"; sha256="09855qvr8mhc7g8crpjx7pxrkqfqrzd6dy9d0ccffazz6qgbbjfz"; depends=[boot glasso glmnet jsonlite mclust networkD3 nnet progress]; }; @@ -2607,12 +2531,11 @@ in with self; { LaF = derive2 { name="LaF"; version="0.8.4"; sha256="1mj010bl4ql0hm33vl0dd08s9dab11y9fa32nsqs6kbb22gjzk6p"; depends=[Rcpp]; }; LabApplStat = derive2 { name="LabApplStat"; version="1.4.3"; sha256="12brjwd0hazc3s69wjybmfvapslcx87npa647hlrcfjxzg46x9ar"; depends=[emmeans ggplot2 ggraph]; }; LabRS = derive2 { name="LabRS"; version="0.1.0"; sha256="1a9qafimia83qldsif5wfqx273mvqbx22p5i0hg8n4jvj4vzpy2w"; depends=[knitr]; }; - LabourMarketAreas = derive2 { name="LabourMarketAreas"; version="3.3"; sha256="1879w9xssymk6shnlb3alkfkw4697nfwx9b0gw7y3qrvvvjwh05j"; depends=[data_table maptools rgdal rgeos sp spdep]; }; + LabourMarketAreas = derive2 { name="LabourMarketAreas"; version="3.3.1"; sha256="1wdfcqjzjc0vwgzv85dfny2r3gsi26wmk85s75bz6hbnwp836sav"; depends=[data_table maptools rgdal rgeos sp spdep tmap]; }; LadR = derive2 { name="LadR"; version="1.0.6"; sha256="14n58y1p14wwxwwrbdqv2kkplma8ficpqx8nd22qp931idijpsji"; depends=[L1pack]; }; LagSequential = derive2 { name="LagSequential"; version="0.1.1"; sha256="1i8h4acfx21r0kxbg4i0k48kvhwy2abri191wp4b22amhz4vqyyd"; depends=[]; }; - Lahman = derive2 { name="Lahman"; version="9.0-0"; sha256="0q6whyqlxdkm17i6hichnd89y3pnjc0xc5aabdanf1i4lpv5vynr"; depends=[dplyr]; }; + Lahman = derive2 { name="Lahman"; version="10.0-1"; sha256="0k8vwcqnkp24n3micwwc63lagpll1np749az2imj4zyyhd8hyq7n"; depends=[dplyr]; }; LakeMetabolizer = derive2 { name="LakeMetabolizer"; version="1.5.0"; sha256="06mvdrdyl0rh9rwd0jxww0sycadcp7cj08hq35q6vyzq0jkxn2xf"; depends=[plyr rLakeAnalyzer]; }; - Lambda4 = derive2 { name="Lambda4"; version="3.0"; sha256="04ikkflfr0nmy1gr3gfldlh2v8mpl82k1wwnzp57d2kn75m9vbxz"; depends=[]; }; LambertW = derive2 { name="LambertW"; version="0.6.7"; sha256="15ad642cldn2dy6c1dcsyngv94901imi76v6yi50nr1qqad0jilq"; depends=[ggplot2 lamW MASS RColorBrewer Rcpp reshape2]; }; Landmarking = derive2 { name="Landmarking"; version="1.0.0"; sha256="1gkfv1xcjkbh417kv9dkflfg6agvgrd893v8ams25c2pazfmrmnz"; depends=[dplyr ggplot2 mstate nlme pec prodlim riskRegression survival]; }; Langevin = derive2 { name="Langevin"; version="1.3.1"; sha256="0sg3way9hlk875dfwbby59qm5dxwq7d763a0xjgjwaygpwqc83kz"; depends=[Rcpp RcppArmadillo]; }; @@ -2633,8 +2556,7 @@ in with self; { LearnBayes = derive2 { name="LearnBayes"; version="2.15.1"; sha256="0ch54v2zz2yyyk0lvn5rfikdmyz1qh9j1wk3585wl8v58mc0h4cv"; depends=[]; }; LearnClust = derive2 { name="LearnClust"; version="1.1"; sha256="0r2ns1bnsygc6jhr83v1ylfp8fkn3j76233zk5cwsxrq0grx5iqs"; depends=[magick]; }; LearnGeom = derive2 { name="LearnGeom"; version="1.5"; sha256="1pnxiwjkdj78p4hkl1lqagmd937q63yncb45fcra28sa9v9psrcs"; depends=[]; }; - LearnPCA = derive2 { name="LearnPCA"; version="0.1.4"; sha256="17pr3m5ifcb4snza64d0ri3h94ybwn85clx4rvqb0y9735jmgw7w"; depends=[]; }; - LearningRlab = derive2 { name="LearningRlab"; version="2.2"; sha256="15lkcrdfdrip1s4rpsn6kshjzsg1hfryh6lgbiqw9x2h0xvfj4da"; depends=[crayon magick]; }; + LearnPCA = derive2 { name="LearnPCA"; version="0.2.0"; sha256="0b7g12mcmbxrh2zywgk5n4w7ix0pwf074r3ch5ak0h8cwd26zmqz"; depends=[markdown shiny]; }; LearningStats = derive2 { name="LearningStats"; version="0.1.0"; sha256="0xrrb6jws4zj2nwnn30g338bib49b7j26v52ym7p2variwllz068"; depends=[data_table haven readODS readxl]; }; LexFindR = derive2 { name="LexFindR"; version="1.0.2"; sha256="16ikw3s034zqgfcp2hiyhv1nq5kp65wpq1d8fclrlqiabilyk7x4"; depends=[]; }; LexisNexisTools = derive2 { name="LexisNexisTools"; version="0.3.5"; sha256="1yvvvx931lhfzkl5xh34nb75dibr1wpzlvhgfg4r5slxxp335y83"; depends=[data_table pbapply quanteda quanteda_textstats stringdist stringi tibble]; }; @@ -2642,19 +2564,21 @@ in with self; { LibOPF = derive2 { name="LibOPF"; version="2.6.1"; sha256="01j3jzhi337dmblcm1d79i4cbp159z6k54ybpyzfasjfnp7qizz6"; depends=[]; }; LiblineaR = derive2 { name="LiblineaR"; version="2.10-12"; sha256="0r5xbklbfgflwlmkh4i0bsdyqcjs1b4lvxr20f4fhajmkj83gqrs"; depends=[]; }; LiblineaR_ACF = derive2 { name="LiblineaR.ACF"; version="1.94-2"; sha256="1ldkb63yhm1ki8i585wp5byx6y0kvclwy3ncacgcdqqk0p41cyi6"; depends=[]; }; + Libra = derive2 { name="Libra"; version="1.7"; sha256="1fdxvjv3pwpvfw3hnff09s89b2lv13v3ds91lyg3yi7am820dyzg"; depends=[nnls]; }; LifeHist = derive2 { name="LifeHist"; version="1.0-1"; sha256="0q6l6rva5kxl8yzqa7ni4sdj6p4c61sdsjx8zhckzxb7xlwg2hh0"; depends=[BB Hmisc optimx]; }; LifeInsuranceContracts = derive2 { name="LifeInsuranceContracts"; version="0.0.3"; sha256="0qdwz7fm5y3nvmqnw20jghzi0qm9bx52rnk4di74j60x2y13wf4m"; depends=[abind dplyr kableExtra lubridate MortalityTables objectProperties openxlsx pander R6 rlang scales stringr tidyr]; }; LifeTables = derive2 { name="LifeTables"; version="1.0"; sha256="1dyivvi5cjsnbhncj3arkrndadg7v81nzdf6p6mpgqwqvwn5li8x"; depends=[mclust]; }; LightningR = derive2 { name="LightningR"; version="1.0.2"; sha256="1va673aw2hgir8ybbjad6dhbs8izs1z4jcikwa7qp3mkv0zqd0vq"; depends=[httr R6 RCurl RJSONIO]; }; - LilRhino = derive2 { name="LilRhino"; version="1.2.1"; sha256="1ml0b2d5agjjvn0wk7j1bjh4bazp1qh2x8zccdvk19q4cf28v4qm"; depends=[beepr data_table dplyr e1071 fastmatch FNN ggplot2 keras neuralnet readr SnowballC stringi textclean tm]; }; + LilRhino = derive2 { name="LilRhino"; version="1.2.2"; sha256="1b3wbnzqakjxh3c3s4cxf14nnb1vrbvslqcyn9bh0zbw1arf5ixl"; depends=[beepr data_table dplyr e1071 fastmatch FNN ggplot2 keras neuralnet readr SnowballC stringi tm]; }; LimnoPalettes = derive2 { name="LimnoPalettes"; version="0.1.0"; sha256="0qzcx182nn5ygqlsqmxl1r4r0gg89q0qqgk6hk5lvgb5ghf91z3y"; depends=[]; }; - LinCal = derive2 { name="LinCal"; version="1.0"; sha256="1xr9jnna20hh78dh9wjg70jm8fhaxvdwql894kdp0y5h4pchkdph"; depends=[]; }; + LinCal = derive2 { name="LinCal"; version="1.0.1"; sha256="1zxl0p2lj0nnzsxv6lzncswj0czvzxy2islbjvdinjzkkfjm7izb"; depends=[]; }; LinRegInteractive = derive2 { name="LinRegInteractive"; version="0.3-3"; sha256="1rkxvkv3ls0cgqcvs74dy6qabh62cjc0xh89dlk88bpc8mz76k8z"; depends=[rpanel xtable]; }; LindenmayeR = derive2 { name="LindenmayeR"; version="0.1.13"; sha256="01wnvmxdb91ai21h3plgsmy6ds7564s5wq2xyr905ma4a2d8afn5"; depends=[stringr]; }; LindleyPowerSeries = derive2 { name="LindleyPowerSeries"; version="1.0.1"; sha256="1hzncfknnyr7z95yv6146j362fz2dlmgyv755ac29b098x5ix808"; depends=[lamW]; }; LindleyR = derive2 { name="LindleyR"; version="1.1.0"; sha256="163i604q683znp6q544hnv4vibygwvsxcfhh8m7iaqr42li3c0ak"; depends=[lamW]; }; LinearDetect = derive2 { name="LinearDetect"; version="0.1.5"; sha256="0i79k42avcv2nhk9p71a74zv8d204jgqzrs2mni6zp8brhwmxlki"; depends=[factoextra ggplot2 glmnet mvtnorm Rcpp RcppArmadillo sparsevar]; }; LinearRegressionMDE = derive2 { name="LinearRegressionMDE"; version="1.0"; sha256="0nl29l10y5kpds1i4sv7jwizq61fmh5c0zpj8x64qfif4l6y4v0d"; depends=[]; }; + Linkage = derive2 { name="Linkage"; version="0.9"; sha256="1qiz163qrmg0zp8kah6hrpa7wm6k6bm8a1xgmd7nhfnyvq67l8zs"; depends=[httr jsonlite network RColorBrewer sna]; }; LinkageMapView = derive2 { name="LinkageMapView"; version="2.1.2"; sha256="101g4djzkxgxbn87an2vz4s9nwn8gwz7a3p3wg0y4zpdd1pdp716"; depends=[plotrix qtl RColorBrewer]; }; LinkedGASP = derive2 { name="LinkedGASP"; version="1.0"; sha256="1win1yd8y677rmic531dyd29f49p7pr1r3kbjysvv9syi5nkydyj"; depends=[nloptr spBayes]; }; LinkedMatrix = derive2 { name="LinkedMatrix"; version="1.4.0"; sha256="0p6qjnrljxnj3c5nynmx563vcqhxj4jf7czqdg750h38gjy8qzxi"; depends=[crochet]; }; @@ -2663,7 +2587,6 @@ in with self; { LncFinder = derive2 { name="LncFinder"; version="1.1.5"; sha256="0mb41fjph4svn2amdx6fb2j8pzgll17c0xxwnsan9vjipnmj59hi"; depends=[caret e1071 seqinr]; }; LncPath = derive2 { name="LncPath"; version="1.1"; sha256="1cpsy681yq96867nr9g75xb0dilb016shqlhxpdn5xyiakrgjl4v"; depends=[igraph]; }; LoBrA = derive2 { name="LoBrA"; version="1.0"; sha256="0rsxkli6xhjwy058skgij2cf3n1lcjsaw3pd51i55l2bpwlrmci6"; depends=[lawstat nlme qpdf RColorBrewer]; }; - LocFDRPois = derive2 { name="LocFDRPois"; version="1.0.0"; sha256="0zzdp9wgwr6wn3grimghpj4vq34x37c8bqg8acfzlzih8frqal3r"; depends=[dplyr ggplot2]; }; LocKer = derive2 { name="LocKer"; version="1.1"; sha256="034r6215aigb5hdm2a7cs8qw3nikjdjqnqpn1g27p3lxwfp0n3pr"; depends=[fda Matrix psych]; }; LocalControl = derive2 { name="LocalControl"; version="1.1.2.2"; sha256="1lqcjy5fzz1ndqih5nikidy2zfkn2dn7smbyvdjy47pgcjbzm96a"; depends=[cluster gss lattice Rcpp]; }; LocalControlStrategy = derive2 { name="LocalControlStrategy"; version="1.3.3"; sha256="05vggk5d0w3f9w5217c9hzy5jhwv24p2g8pcj0l6zxkhic01nbrl"; depends=[cluster lattice]; }; @@ -2683,9 +2606,10 @@ in with self; { LoopDetectR = derive2 { name="LoopDetectR"; version="0.1.2"; sha256="0c65svz9v8z9886awdf9jm3ysk7nc7gk7q2ihpy20fcciiv05b30"; depends=[igraph numDeriv]; }; LoopRig = derive2 { name="LoopRig"; version="0.1.1"; sha256="11rarb9fg8abc4dpd8sd8safqw3v6g8k6rcrg2nw97xppwcz8c6b"; depends=[GenomicRanges IRanges S4Vectors]; }; LotkasLaw = derive2 { name="LotkasLaw"; version="0.0.1.0"; sha256="11kq52yavicimp7ll7ljrs69a5fxf68ydb9md7v6b02iw5mwbmz7"; depends=[]; }; - LowRankQP = derive2 { name="LowRankQP"; version="1.0.4"; sha256="0cg8f42s15vphnifw6gnrhxaj6j5hmgbq8xki5mkwjsizd0ch5na"; depends=[]; }; + LowRankQP = derive2 { name="LowRankQP"; version="1.0.5"; sha256="0xqygbcdk7sizlch4rvq6klm9k0h6vp77v09zfgcz0rhrxqv0nby"; depends=[]; }; LowWAFOMNX = derive2 { name="LowWAFOMNX"; version="1.1.1"; sha256="0f75qsv6pisgvk39yagzfxscnyfsgh63rmhp4gpybpl0pqmjp48x"; depends=[Rcpp RSQLite]; }; LowWAFOMSobol = derive2 { name="LowWAFOMSobol"; version="1.1.1"; sha256="1ym3i2m1am356di9lcp5nfmxq0np3c4bwsv6bbmf7hg02j7dhwi4"; depends=[Rcpp RSQLite]; }; + LqG = derive2 { name="LqG"; version="0.1.0"; sha256="08v6qyvg96jn096xvayivywllcja782mg4zi4gcaaq12hhwdhl1m"; depends=[]; }; Luminescence = derive2 { name="Luminescence"; version="0.9.19"; sha256="1hs2sdlvnvy20k03alagq505jgd3756azcdjhgswjbk4bhy4rd8r"; depends=[bbmle data_table DEoptim httr lamW matrixStats mclust minpack_lm plotrix Rcpp RcppArmadillo readxl shape XML zoo]; }; M2SMF = derive2 { name="M2SMF"; version="2.0"; sha256="160qjrb3mxybvr4z6zra6rzf6scyrb9mplw36gqlfxj418ndnmm1"; depends=[dplyr MASS]; }; M2SMJF = derive2 { name="M2SMJF"; version="1.0"; sha256="0v4sg5h3h2pjp996jspv206c8cymjpn1fg38ivaw12s7bmx8j409"; depends=[dplyr MASS]; }; @@ -2694,8 +2618,7 @@ in with self; { MABOUST = derive2 { name="MABOUST"; version="1.0.1"; sha256="044k29nibl5zc32zz2696kbhrz5dafgaikgmjqznsq25p48si453"; depends=[Rcpp RcppArmadillo]; }; MACER = derive2 { name="MACER"; version="0.1.1"; sha256="006f15s75hnyacc31ni4gf1r4j32hlv5bqmnnl9fkcgf9jxs9hw4"; depends=[ape httr rentrez]; }; MADPop = derive2 { name="MADPop"; version="1.1.2"; sha256="0hwnkjrc3w9x3gha0y70fidfc587b6gfdhzwzdzrfvxrhsdy05yd"; depends=[BH Rcpp RcppEigen rstan StanHeaders]; }; - MAFDash = derive2 { name="MAFDash"; version="0.2.1"; sha256="11d503sw423ddawj8lapxpm59532nxz4b6wh06fn4kqzh0gq1mbj"; depends=[bsplus canvasXpress circlize ComplexHeatmap crosstalk data_table dplyr DT ensurer flexdashboard GenomicRanges ggbeeswarm ggplot2 htmltools IRanges knitr maftools pheatmap plotly readr reshape2 rmarkdown TCGAbiolinks tibble tidyr]; }; - MAGEE = derive2 { name="MAGEE"; version="1.1.0"; sha256="18kibsankq9b00vkcc7480g1iahgys9n4lyiykxzqq41s8lm58jc"; depends=[CompQuadForm foreach GMMAT MASS Matrix Rcpp RcppArmadillo SeqArray SeqVarTools]; }; + MAGEE = derive2 { name="MAGEE"; version="1.1.1"; sha256="0ndvprz7pnfyc18gq0n0jqqg9xryvv7vf3chppyvq27l6jfmpyx2"; depends=[CompQuadForm foreach GMMAT MASS Matrix Rcpp RcppArmadillo SeqArray SeqVarTools]; }; MAGNAMWAR = derive2 { name="MAGNAMWAR"; version="2.0.4"; sha256="1asr18byrgy6bkpxpmnkczgr3dam6ymf30lw6izq112krc891bg4"; depends=[ape coxme doParallel dplyr foreach iterators lme4 multcomp plyr qqman seqinr survival]; }; MAINT_Data = derive2 { name="MAINT.Data"; version="2.6.2"; sha256="0c2llzjhrv1jn5zna654bjgyq5q0hqwzfv9kda9mfjf20pfc34my"; depends=[GGally ggplot2 MASS mclust miscTools pcaPP Rcpp RcppArmadillo robustbase rrcov sn withr]; }; MAKL = derive2 { name="MAKL"; version="1.0.0"; sha256="0x0b7jpx3hiipmy7jgh8dnz1rnbh512g81fv62049c8v6wg47pd7"; depends=[AUC grplasso]; }; @@ -2711,12 +2634,11 @@ in with self; { MARSANNhybrid = derive2 { name="MARSANNhybrid"; version="0.1.0"; sha256="1xs0gjdjl9c5i1i8ds9s3sq0764267h6gngkbwimfa8miq287idm"; depends=[earth neuralnet]; }; MARSS = derive2 { name="MARSS"; version="3.11.4"; sha256="10mf1vs51yqqg6s2435j84xbaxvr6wdraha07mqlr2rmprgl5a0r"; depends=[KFAS mvtnorm nlme]; }; MARSSVRhybrid = derive2 { name="MARSSVRhybrid"; version="0.1.0"; sha256="10b8d75q5hiqf8id1qsvjx379xyx4vphq5r1iwvykjaw4zxbyx65"; depends=[e1071 earth]; }; - MASS = derive2 { name="MASS"; version="7.3-56"; sha256="11gv5965ba6xr4qsp1945vd39rp0sggzpa103rwj1c5hw0abvnlv"; depends=[]; }; + MASS = derive2 { name="MASS"; version="7.3-57"; sha256="13asg609szqq8d1a4ybr508qcanr9gvqd439vfras6mw0l0qi2xx"; depends=[]; }; MASSExtra = derive2 { name="MASSExtra"; version="1.1.2"; sha256="0jzzm3ahn1iisdp632hcn8lnk6hhh699jqfj6v0164qxd6487xvs"; depends=[demoKde MASS]; }; MASSTIMATE = derive2 { name="MASSTIMATE"; version="2.0-1"; sha256="1dvidwjw4zgflms5njbd9n85g1gbgfg6hk0fb63q5n65iyxxfmyh"; depends=[]; }; - MAT = derive2 { name="MAT"; version="2.2"; sha256="093axw2zp4i3f6s9621zwibcxrracp77xrc0q5q0m4yv3m35x908"; depends=[Rcpp RcppArmadillo]; }; + MAT = derive2 { name="MAT"; version="2.3.1"; sha256="0jr08j96agqw4hzdbk9ixdpngh60bd7w47192d0zm3byymcxpb0y"; depends=[Rcpp RcppArmadillo]; }; MATA = derive2 { name="MATA"; version="0.7.1"; sha256="0qydfp856qlmiwf3a2vs2dfk203sx8vvzrqn4hga9wi7bxdylk9f"; depends=[]; }; - MATTOOLS = derive2 { name="MATTOOLS"; version="1.1"; sha256="1nzrkm3a08rpsd9vplyf33rrkadlrd0ln70k95qxj98ndh2v97px"; depends=[]; }; MAVE = derive2 { name="MAVE"; version="1.3.11"; sha256="01n204bxabbm8pcpayy2s0jvhg73r5cv0026lb3vbk0m40z02kcz"; depends=[mda Rcpp RcppArmadillo]; }; MAVTgsa = derive2 { name="MAVTgsa"; version="1.3"; sha256="0rzal9nsi8y873cbf6hrdyzyxnpd4r1yr9fj66cn0s1c8g93ls0y"; depends=[corpcor foreach MASS multcomp randomForest]; }; MAclinical = derive2 { name="MAclinical"; version="1.0-5"; sha256="1g0ka1kqww2xim8rp5rznkzn0a541zvf841s3lbphfh9k3y3ixs3"; depends=[e1071 party plsgenomics st]; }; @@ -2733,9 +2655,7 @@ in with self; { MBNMAdose = derive2 { name="MBNMAdose"; version="0.4.1"; sha256="1825vqdwzachig7fg3s8gq64m1gdh9gjccv5y9r0qh9x5015s0f1"; depends=[checkmate dplyr igraph magrittr R2jags Rdpack reshape2 rgeos rjags scales]; }; MBNMAtime = derive2 { name="MBNMAtime"; version="0.2.1"; sha256="1qm8g9hljl3qsnh434dzg2y0iyq635ym1ygfzr0q8l6h76qr7p1j"; depends=[checkmate dplyr knitr magrittr R2jags Rdpack reshape2 rjags]; }; MBSGS = derive2 { name="MBSGS"; version="1.1.0"; sha256="1h5vhmpgrqza12j7ivhwgd5wyb7kkb8mjbxl5w756vyid8g03flz"; depends=[MASS MCMCpack mgcv mnormt truncnorm]; }; - MBSP = derive2 { name="MBSP"; version="1.0"; sha256="0mds6jfqgmnm4saqqqqqfcg8zh4qsvd2503g3ij1sn70f0aakwaj"; depends=[coda GIGrvg MASS Matrix MCMCpack]; }; MBmca = derive2 { name="MBmca"; version="1.0.1-3"; sha256="08ls1rc440jjmbwm6nx09xyr8nb8q6wwid0dyvb97fv4l85qwn19"; depends=[chipPCR robustbase]; }; - MC2toPath = derive2 { name="MC2toPath"; version="0.0.16"; sha256="0jdn9wpxavn2wrml907v23mfxr62wwjdh7487ihjj59g434ry7wh"; depends=[RNetCDF]; }; MCAvariants = derive2 { name="MCAvariants"; version="2.6"; sha256="19wnkk7bknj5yd0s63ssybyzbs7x022wyr444hlinw8b181x57f3"; depends=[ggplot2 ggrepel gridExtra plotly]; }; MCBackscattering = derive2 { name="MCBackscattering"; version="0.1.1"; sha256="0vvcqjrh8psl480s4q2830rzm2bwy9mmvk9kipp72lzln51qnha6"; depends=[]; }; MCDA = derive2 { name="MCDA"; version="0.0.21"; sha256="1y37whbmzzghdav10l4w72sv6dzdxfhij7vkq5217ajkn2cm06mg"; depends=[combinat glpkAPI RColorBrewer Rglpk]; }; @@ -2747,7 +2667,7 @@ in with self; { MCMC_qpcr = derive2 { name="MCMC.qpcr"; version="1.2.4"; sha256="0v0d43wnq3swbrcsbg9qmwkmk4s50grd6cik4ng5baj2i6i4hd2n"; depends=[coda ggplot2 MCMCglmm]; }; MCMC4Extremes = derive2 { name="MCMC4Extremes"; version="1.1"; sha256="06p6xdbja7vrdq4vnhybpkmyf4rkaihcmy9sc81sb0h2wa21vcq0"; depends=[evir]; }; MCMCglmm = derive2 { name="MCMCglmm"; version="2.33"; sha256="1z6l2lbirjrdvvkd6yp55p6gjlc0bcz79k2yl2i5zvgqk7kp4vdm"; depends=[ape coda corpcor cubature Matrix tensorA]; }; - MCMCpack = derive2 { name="MCMCpack"; version="1.6-2"; sha256="18nyncvgb75q8flndni99ldr7ynqhillphkj7ydsmfv5w8b0zvqp"; depends=[coda lattice MASS mcmc quantreg]; }; + MCMCpack = derive2 { name="MCMCpack"; version="1.6-3"; sha256="1cwdjn43b9hxpxf9mnas583myhk6r2258mh57f0zsc8bd4hbl56b"; depends=[coda lattice MASS mcmc quantreg]; }; MCMCprecision = derive2 { name="MCMCprecision"; version="0.4.0"; sha256="0r0qchiv61sk3drrb0rhwsk55gci4w343hd2gsvclrlyb8r9qhaf"; depends=[combinat Matrix Rcpp RcppArmadillo RcppEigen RcppProgress]; }; MCMCtreeR = derive2 { name="MCMCtreeR"; version="1.1"; sha256="00r6f62h7ryil7qxd25icvkqypjjssjsrz4i5sbqsnw5cdy5al8z"; depends=[ape coda sn]; }; MCMCvis = derive2 { name="MCMCvis"; version="0.15.5"; sha256="1sh8znwk2s6gx7q6h1ps5yid24ywj2fpng0c7nckrfkywb5h5j14"; depends=[coda colorspace overlapping rstan]; }; @@ -2760,9 +2680,8 @@ in with self; { MCSim = derive2 { name="MCSim"; version="1.0"; sha256="1nqry41qa5c02an5fxm3y1g3w1vcqjgsy1an95i3szz1w1ndaj14"; depends=[CircStats MASS]; }; MCTM = derive2 { name="MCTM"; version="1.0"; sha256="14xjfskyrqi0m58lkwjfjpss5j7wy3ajr148n526czrrpccg108j"; depends=[]; }; MChtest = derive2 { name="MChtest"; version="1.0-3"; sha256="1b3p6ry8gkvyphakn3504ibl2x8dbhx95saild0mj0iwm3sjyspf"; depends=[]; }; - MConjoint = derive2 { name="MConjoint"; version="0.1"; sha256="02yik28mhvd4rfqwrprdbdjx9c49ds55fh042bsjajs2ip467w5c"; depends=[]; }; MDBED = derive2 { name="MDBED"; version="1.0.0"; sha256="1r3sizb2mqd4pqjy25krwmsjfkr6cl7lkd8db5jn3hgxx3qh6sgc"; depends=[doParallel foreach ggplot2 lattice orthopolynom psych Rdpack]; }; - MDFS = derive2 { name="MDFS"; version="1.2.0"; sha256="17w243j77l3kcqf4hpzk3mp2csvcs8ax8sj6jm0qrngckl5d123h"; depends=[]; }; + MDFS = derive2 { name="MDFS"; version="1.3.0"; sha256="0sv6j8arfh4w333y1mp3n65bzi2kz9zrk2wpw80z5vci2489s50d"; depends=[]; }; MDMAPR = derive2 { name="MDMAPR"; version="0.2.3"; sha256="0w2n6qrjvyzf2wc1yw8a8k027g3y3w2k0z6wkwnj1p8q5zg24c66"; depends=[berryFunctions bslib DBI dplyr DT ggplot2 htmltools htmlwidgets leaflet leaflet_extras plotly reactable readxl RMySQL shiny shinydashboard shinyjs shinyWidgets writexl xfun]; }; MDMR = derive2 { name="MDMR"; version="0.5.1"; sha256="1pv57xl7pjsqxz1j8mnfmjaa36mlr749yb4c44ppdrx6khvw662x"; depends=[car CompQuadForm lme4]; }; MDOLS = derive2 { name="MDOLS"; version="1.0"; sha256="02fkrv6yn2r0ryphvxhlnv05xxq3j824ijnj75dag3v9kinx1ar2"; depends=[]; }; @@ -2782,30 +2701,26 @@ in with self; { MESS = derive2 { name="MESS"; version="0.5.7"; sha256="0c3fs07szzr023pw92drd3a85vqp0ydfh30x235f0cssny1kxlj8"; depends=[geeM geepack ggformula ggplot2 glmnet kinship2 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; MEclustnet = derive2 { name="MEclustnet"; version="1.2.2"; sha256="0rs58dafxngk2lkq14cy14ayjwgnz1gmi12jmi4z74sdj0b3h0gw"; depends=[e1071 ellipse latentnet MASS mvtnorm nnet vegan]; }; MEtest = derive2 { name="MEtest"; version="1.1"; sha256="0dxm3fs0lqnas70a1ckikvjp2ib9rqsknwcs9n9jfsmm1fqhxdpf"; depends=[statmod]; }; - MF = derive2 { name="MF"; version="4.3.2"; sha256="1arnhyqf1cjvngygcpqk2g4d52949rhkjmclbaskyxcrvp62qln0"; depends=[]; }; MFAg = derive2 { name="MFAg"; version="1.8"; sha256="1kkcx6290ffk8g3amakaa5z5hz07z9iiqp2jxvma4pk85w6qay83"; depends=[]; }; MFDFA = derive2 { name="MFDFA"; version="1.1"; sha256="0nr78p6y4jpg1hrl0h7b7hyvwbr61paf85y3f2dx815x5hscmdhy"; depends=[numbers]; }; - MFHD = derive2 { name="MFHD"; version="0.0.1"; sha256="0gb8y297y1x03wy46530psmlawyv4z5dydilk36qcmadlk1wx02k"; depends=[deldir depth depthTools fda_usc matrixStats]; }; MFO = derive2 { name="MFO"; version="0.1.0"; sha256="0i8zkdwmngdq21f1rmn1fmgsr525xfzyjd7nxwy8p7fns6hsq31r"; depends=[dplyr ggplot2 magrittr minpack_lm openxlsx readxl stringr tibble tidyr]; }; MFPCA = derive2 { name="MFPCA"; version="1.3-9"; sha256="1cajh9aiirngc8p68kfll17mf2a874pk55cjrmxzr1l8p3ipd7s5"; depends=[abind foreach funData irlba Matrix mgcv plyr]; }; - MFSIS = derive2 { name="MFSIS"; version="0.1.2"; sha256="0s4rswhc5aigp7f0yq91f131ghx2jjsmxikp9i2ycqg8bcza17nv"; depends=[Ball cli crayon doParallel dr foreach fs MASS reticulate survival]; }; + MFSIS = derive2 { name="MFSIS"; version="0.1.3"; sha256="0c49zvqj78x5xw675mjcmkg2hhps2j0mz2jhkq7ppci3y3s5hlgw"; depends=[Ball cli crayon doParallel dr foreach fs MASS reticulate survival]; }; MFT = derive2 { name="MFT"; version="2.0"; sha256="0n1xws3dw0650037qyqgp600p8cf098qa5hkbncdfdbl0w34qamy"; depends=[]; }; MGBT = derive2 { name="MGBT"; version="1.0.7"; sha256="0wrw5yjaw3sgsw0l8q5gq95i5q1wxwgcffkxkxaa1cygblrrz12y"; depends=[]; }; MGDrivE = derive2 { name="MGDrivE"; version="1.6.0"; sha256="0ynn7iwxi5yfpjyrvfr6ym4ns7h8qfy8c10clab7i72pv90jqqlr"; depends=[R6 Rcpp Rdpack]; }; MGDrivE2 = derive2 { name="MGDrivE2"; version="1.1.0"; sha256="18pkv3gr2c2qi6p8x2d9wx713k1x251s49qaj2airqy84x2zd8dh"; depends=[deSolve Matrix]; }; MGL = derive2 { name="MGL"; version="1.1"; sha256="03q453swnangxyc4nvjhzw2zpcy5vp1wpilap5rwymnf0c0xi4j7"; depends=[]; }; - MGLM = derive2 { name="MGLM"; version="0.2.0"; sha256="0yyqm53lvp59zy8lkffw9x3zhqrnh29j5v3yyzk6qrgj2slnc7nk"; depends=[]; }; + MGLM = derive2 { name="MGLM"; version="0.2.1"; sha256="0fkdknr954cglvj4pgwphr1d5apx45v0l8m2blghz8vagzk01ndf"; depends=[]; }; MGMM = derive2 { name="MGMM"; version="1.0.0"; sha256="13ii5vybf97prjv963y32sybp016s38xhr29wlvp90vw1bzjrxvf"; depends=[cluster mvnfast plyr Rcpp RcppArmadillo]; }; MGMS2 = derive2 { name="MGMS2"; version="1.0.2"; sha256="04f1ng4s163x7gvy1iaf0j8pzs0pm2r2saji0srbp2jyhrj68d7z"; depends=[MALDIquant MALDIquantForeign]; }; - MGRASTer = derive2 { name="MGRASTer"; version="0.9"; sha256="0jmf2900r56v60981sabflkhid3yrqd9xd7crb56vgfl1qkva9zp"; depends=[]; }; MGSDA = derive2 { name="MGSDA"; version="1.6"; sha256="03n7ngfbh87hhgpkjkc1a0zjslr0k9zip1prvbwhyqkfq21zajbr"; depends=[MASS]; }; MHCtools = derive2 { name="MHCtools"; version="1.4.1"; sha256="1dkinfhiyc4gwpasw7nfvgaf7gby8x33fi5dfj976dcgsaqglj9a"; depends=[mgcv]; }; - MHDA = derive2 { name="MHDA"; version="1.0"; sha256="1ghhv6ipwap26f0cjgw94ydrrzm6v71mhjpvgl66vsp0hg349zz5"; depends=[]; }; + MHDA = derive2 { name="MHDA"; version="1.1"; sha256="088w1mhcc6qp7jqvig024hnfakj4n2jsn47d4mg2vagf4zhgrchl"; depends=[]; }; MHMM = derive2 { name="MHMM"; version="1.0.0"; sha256="0d3djaydw0h7x3vlaghrbgmx024rgv36wfsjhlixzzssb2d6lqzi"; depends=[BH ggplot2 gridExtra Rcpp RcppArmadillo reshape2]; }; MHTdiscrete = derive2 { name="MHTdiscrete"; version="1.0.1"; sha256="0czpsk4jiwbzd6g2dwssmggsdhwchikmc1skv48d9j4xvglns7yw"; depends=[]; }; MHTmult = derive2 { name="MHTmult"; version="0.1.0"; sha256="1y3vh2kab6nfkiz4nzdhrpy9h6drk1ibfd2h62hpr3y09z9a2yld"; depends=[]; }; MHTrajectoryR = derive2 { name="MHTrajectoryR"; version="1.0.1"; sha256="13idcjx7pjpwvr4c52938yqhhaj1gprb8hjhaim3jx4062wf9pla"; depends=[mgcv]; }; - MHadaptive = derive2 { name="MHadaptive"; version="1.1-8"; sha256="1w3bm82v8ahxrf0vqn0pznv7dqn212drinkz8y5kr1flx423l9ws"; depends=[MASS]; }; MIAmaxent = derive2 { name="MIAmaxent"; version="1.2.0"; sha256="0r4q1735f7apfj0jz4f52ra7sisbkkkk2n6i0kii3q64sx2h3xbj"; depends=[dplyr e1071 raster rlang]; }; MICsplines = derive2 { name="MICsplines"; version="1.0"; sha256="1ig3329akcaq6lk17nnid64qgz1i8spy11f1gawnbmp2x6z6y8wc"; depends=[]; }; MIDASwrappeR = derive2 { name="MIDASwrappeR"; version="0.5.1"; sha256="07108dg16i20fg6cvsnbflfz65smwk08vjmf1b193zyvhdikwhfm"; depends=[Rcpp]; }; @@ -2820,8 +2735,6 @@ in with self; { MIRES = derive2 { name="MIRES"; version="0.1.0"; sha256="17k6f73qx85klhhn247nr6h7sinpabq9crlc5ag7qm6z7k6mr370"; depends=[BH cubature dirichletprocess Formula HDInterval logspline mvtnorm nlme pracma Rcpp RcppEigen rstan rstantools StanHeaders truncnorm]; }; MIWilson = derive2 { name="MIWilson"; version="1.0.0"; sha256="1iclwvhbhnkls3jvz3ihjrxhzhahdg0g0ii7x39mxhw973fh423l"; depends=[dplyr magrittr mice]; }; MIXFIM = derive2 { name="MIXFIM"; version="1.1"; sha256="1xx25b7hfyzynfh3vsqrkriqnqnn173gn8j1vwqmc434c1vy4nx2"; depends=[ggplot2 mvtnorm rstan]; }; - MImix = derive2 { name="MImix"; version="1.0"; sha256="033gxr0z2xba0pgckiigblb1xa94wrfmpgv3j122cdynjch44j4r"; depends=[]; }; - MInt = derive2 { name="MInt"; version="1.0.1"; sha256="1nk02baainxk7z083yyajxrnadg2y1dnhr51fianibvph1pjjkl6"; depends=[glasso MASS testthat trust]; }; MKLE = derive2 { name="MKLE"; version="0.05"; sha256="00hcihjn3xfkzy0lvb70hl2acjkwk6s3y7l4gprix24shnblvxzi"; depends=[]; }; MKMeans = derive2 { name="MKMeans"; version="2.0"; sha256="0l3wmfkfwh8x780x0c32y7lsm32c61syhmd5rziw1dcqjl03amb5"; depends=[]; }; MKclass = derive2 { name="MKclass"; version="0.3"; sha256="0sw0h99k24418iqvvq247kg5558y9mgashr5amay7gbf2va79v6j"; depends=[]; }; @@ -2839,15 +2752,15 @@ in with self; { MLDS = derive2 { name="MLDS"; version="0.4.901"; sha256="0zswlng1vksnx1m6ycna2hbqmzzcfpqz1wgy519fr0j87bqxks69"; depends=[MASS]; }; MLDataR = derive2 { name="MLDataR"; version="0.1.3"; sha256="13jfq4i0dz9nwkzfkc6lx52cni23q4369lmca7vd0jfzffn4zzvv"; depends=[caret ConfusionTableR dplyr ggplot2 OddsPlotty parsnip ranger recipes rsample varhandle workflows]; }; MLEcens = derive2 { name="MLEcens"; version="0.1-5"; sha256="0cdl0y44clds4sg8hikhk354a5xrfbyfg8lxrbh1bfg410rkj186"; depends=[]; }; + MLFS = derive2 { name="MLFS"; version="0.4.2"; sha256="0xrc266hz69vpfi2h59lma0wbyi1wfcw4wb3dbjbnqqwsq1hc0dz"; depends=[brnn dplyr magrittr naivebayes pscl ranger reshape2 tidyr tidyselect]; }; MLGL = derive2 { name="MLGL"; version="0.6.5"; sha256="1qrqw39hghdlbrs0dkv38awrgwdf8lj95rhb3hixcc6nfb2lkr8j"; depends=[FactoMineR fastcluster gglasso MASS Matrix parallelDist]; }; MLGdata = derive2 { name="MLGdata"; version="0.1.0"; sha256="0ysvrnx8m903h99wr40zgg1c6d26m9vsh62zjxh8mvndh69ikzid"; depends=[]; }; MLID = derive2 { name="MLID"; version="1.0.1"; sha256="0ygahmcfbydzic5q3h1ppv5b2ks4lh8mcyfqq27ssmn4g1n6hdvp"; depends=[lme4 nlme]; }; MLML2R = derive2 { name="MLML2R"; version="0.3.3"; sha256="1jgk0h3chab831g5nsppgc6p0xplv11j82491iymnxixqfswb08w"; depends=[]; }; MLMOI = derive2 { name="MLMOI"; version="0.1.1"; sha256="0fliax6ajacm2i416xi26qlwg3y7iw8y6hykkz0mcwp7djyn3n6s"; depends=[Rdpack rJava Rmpfr XLConnect]; }; MLModelSelection = derive2 { name="MLModelSelection"; version="1.0"; sha256="1qfy2rfx2nvkwisl9wwllqsq2qhqzsdmrh90z5zn5qs07d0305wn"; depends=[MASS Rcpp RcppArmadillo RcppDist]; }; - MLMusingR = derive2 { name="MLMusingR"; version="0.1.0"; sha256="1yq5ifp12k1pd59s5m1306934f4f2l9vlhqlfg22vcr7l9pqkw9s"; depends=[lme4 Matrix nlme]; }; + MLMusingR = derive2 { name="MLMusingR"; version="0.2.0"; sha256="1q4401l1rp8wyms0j7x1pjg3mmn9x3cjnxjapv330f9sdw881yxp"; depends=[lme4 Matrix nlme]; }; MLPUGS = derive2 { name="MLPUGS"; version="0.2.0"; sha256="1yda37073g640g1qrkjrwa8hbyq6bjlcw3wpznx0bk5h0639bc0s"; depends=[]; }; - MLVSBM = derive2 { name="MLVSBM"; version="0.2.3"; sha256="15q4n46rjl4702kr6kzdinhqy0qwi1rmz968rpr3rsk6930vpyn8"; depends=[ape blockmodels cluster magrittr R6]; }; MLZ = derive2 { name="MLZ"; version="0.1.4"; sha256="0kvwv13gklilpmqrc939lm1npyvmg8hrxy8m8vfpvrc5jgli49mx"; depends=[dplyr ggplot2 gplots RcppEigen reshape2 TMB]; }; MLeval = derive2 { name="MLeval"; version="0.3"; sha256="1g2w5lrr7199n4zyaalbp9xdgl858hdg1pqr3rpd7v5fmamawc69"; depends=[ggplot2]; }; MLmetrics = derive2 { name="MLmetrics"; version="1.1.1"; sha256="061129b36h7xqw4zsznik694n8yy9qq6aaqfhdxkhdv8n5v1nzvp"; depends=[ROCR]; }; @@ -2858,7 +2771,7 @@ in with self; { MM4LMM = derive2 { name="MM4LMM"; version="2.1.0"; sha256="0bmi3931rgf40yxv38d3fbpcrb00mh6l4mgmk5g8x85xh5f7svgs"; depends=[MASS Matrix Rcpp RcppEigen]; }; MMAC = derive2 { name="MMAC"; version="0.1.2"; sha256="1xwz48iizf0lvmhc7krsraabc49ky85qvgr23w4ip6jzfv4sn1jr"; depends=[]; }; MMD = derive2 { name="MMD"; version="1.0.0"; sha256="0cz009ndsvlk4hvvyl49l0d68z3b7z083r26z52lizbmw7zaxvbv"; depends=[bigmemory e1071 plyr]; }; - MMDCopula = derive2 { name="MMDCopula"; version="0.2.0"; sha256="042a0488i8jgrmlzxm746d45gvhg7s66s8xqz5pwkfskx2qzhdqv"; depends=[cubature pbapply pcaPP randtoolbox VineCopula]; }; + MMDCopula = derive2 { name="MMDCopula"; version="0.2.1"; sha256="10326dnhmscb0dvgyrgz5l1z1wdf9g5xb6s4rlivy7b3zkgq3ii1"; depends=[cubature pbapply randtoolbox VineCopula wdm]; }; MMDai = derive2 { name="MMDai"; version="2.0.0"; sha256="0b9lksql266sqhxy4k3chz2pcaabgijkp7g0v4pm7ci5v50d4vag"; depends=[]; }; MMDvariance = derive2 { name="MMDvariance"; version="0.0.9"; sha256="1yiqabifym7gdknqrhfnql6qc8p163npzrrckbyqjry3yvkqr5wi"; depends=[Biobase lawstat MASS]; }; MMLR = derive2 { name="MMLR"; version="0.2.0"; sha256="1jc33ani6w54j38kxzk0kfj1hjfk80cil2hdja2hcsk6kqwd431d"; depends=[pracma]; }; @@ -2867,16 +2780,15 @@ in with self; { MMWRweek = derive2 { name="MMWRweek"; version="0.1.3"; sha256="1l1ks44v52iggw9nhs56lfj6804yab5b17k8fzrc6h1kvj3vda0s"; depends=[]; }; MMeM = derive2 { name="MMeM"; version="0.1.1"; sha256="1cig085h2jvrpb904wglwvhvds3sn58wpbl081wcwvzipfa8y37s"; depends=[jointDiag lme4 MASS Matrix matrixcalc psych stringr]; }; MNARclust = derive2 { name="MNARclust"; version="1.1.0"; sha256="0r4d066nd5xzry3zn463zqzy3x45pqhix7jlg9ib3sjdfrqqimnn"; depends=[Rcpp RcppArmadillo rmutil sn]; }; - MNB = derive2 { name="MNB"; version="1.0.0"; sha256="0qb682mfiprnrqfgyzwl564krhh6lms15gr4m44kkk3f5cdqxrmf"; depends=[flexsurv numDeriv]; }; + MNB = derive2 { name="MNB"; version="1.1.0"; sha256="01rq6bczqdbqj7w7aacvwb4zvfzy53pkxfawx5faxk60iwba8bj1"; depends=[flexsurv numDeriv]; }; MNLR = derive2 { name="MNLR"; version="0.1.0"; sha256="0q80232ndp7pkklzqdbga1vf51dmsxaivm4ia4wah32rc2c87fqp"; depends=[caret e1071 nnet rmarkdown shiny]; }; MNLpred = derive2 { name="MNLpred"; version="0.0.8"; sha256="0wb1a3d5s9hrv3sw8g1vyr9w9gmig4sdj3l339cv5cjfca75swns"; depends=[MASS]; }; MNM = derive2 { name="MNM"; version="1.0-3"; sha256="16b2yrm2kn943vzrr38qhk6qq20a842xv7iiln4is02csijxw2b3"; depends=[ellipse ICS ICSNP SpatialNP]; }; MNP = derive2 { name="MNP"; version="3.1-3"; sha256="1kaw8kvmi1m4a7k17l6ikp89fksh6l2f53bz1h3n80da259rbhbi"; depends=[MASS]; }; MNS = derive2 { name="MNS"; version="1.0"; sha256="0if46a6rw0f2d72wnykkaa5z5b1p2c0r43il6cbwbcnnb3zd8acb"; depends=[doParallel glmnet igraph MASS mvtnorm]; }; MOCCA = derive2 { name="MOCCA"; version="1.4"; sha256="0g70s7hnmrp4sm8gx49vsijj54y4amlcy6axc4k37k4c9g4sdics"; depends=[cclust class clue cluster]; }; - MODISSnow = derive2 { name="MODISSnow"; version="0.1.0.0"; sha256="1p0mil074gapw6v8paw9595rzp85hxrfsc65llh0ljalmacwgx04"; depends=[gdalUtils lubridate raster RCurl]; }; MODISTools = derive2 { name="MODISTools"; version="1.1.2"; sha256="1br5kpkz3addnndh6740ppkg3xswpdc6fj9x776rswrjmrhazzm7"; depends=[httr jsonlite memoise raster sf]; }; - MODIStsp = derive2 { name="MODIStsp"; version="2.0.7"; sha256="1qv01v6crffd90qjhm9qlaw6lmphlnhv4x2dk0rqskrqdp8mbiq8"; depends=[assertthat bitops data_table gdalUtilities geojsonio httr jsonlite raster sf stringr xml2 xts]; }; + MODIStsp = derive2 { name="MODIStsp"; version="2.0.8"; sha256="1rffimzzpfr2inm9zq763marqqrcnjswn1fpnniy4z4yyp0ja05v"; depends=[assertthat bitops data_table gdalUtilities geojsonio httr jsonlite raster sf stringr xml2 xts]; }; MOEADr = derive2 { name="MOEADr"; version="1.1.1"; sha256="0aqkqw5ph5rvsgpasc94i264lxapr37gpjhk4rkkynph2gnvq1zx"; depends=[assertthat FNN]; }; MOLHD = derive2 { name="MOLHD"; version="0.2"; sha256="1lrl24x7iig15jwxigvqm3jdwnxkn948sxmywn6zi2b1a5hqz05k"; depends=[arrangements fields]; }; MOQA = derive2 { name="MOQA"; version="2.0.0"; sha256="17w4iwf38k0r2fiwqr420hkbbz1a3r89sqwnd2yn300zmaz64hpr"; depends=[gplots psych readr]; }; @@ -2908,15 +2820,15 @@ in with self; { MRFcov = derive2 { name="MRFcov"; version="1.0.38"; sha256="1ajpnxx49zpmph21x0q4x9w4fjpi43s8sqm294i0l883khyx6ljg"; depends=[caret dplyr ggplot2 glmnet gridExtra igraph magrittr MASS Matrix mgcv pbapply plyr purrr reshape2 sfsmisc]; }; MRH = derive2 { name="MRH"; version="2.2"; sha256="1icwlq8js58g9fkiq7fwjg8r97ca47xl3dscnhnga99gkgsfgjwl"; depends=[coda KMsurv survival]; }; MRHawkes = derive2 { name="MRHawkes"; version="1.0"; sha256="0qhwm708jijv1w6iml18bg7fc2igdcmydwpb9dzpa4gwwads8b78"; depends=[IHSEP]; }; + MRPC = derive2 { name="MRPC"; version="3.1.0"; sha256="1hsrcqp4yygz2psxj9m2n1z7pivdf82b3rnqc34ripyql5apmikn"; depends=[bnlearn compositions dynamicTreeCut fastcluster GGally graph gtools Hmisc mice network pcalg plyr psych Rgraphviz sna WGCNA]; }; MRQoL = derive2 { name="MRQoL"; version="1.0"; sha256="0isn4g3jpz7wm99ymrshl6zgkb7iancdzdxl2w98n8fbxsh5z6sw"; depends=[]; }; MRReg = derive2 { name="MRReg"; version="0.1.4"; sha256="0krk9l46ls74dldilkkdf1b202awnql8r138fkxj4h6n8x3psysw"; depends=[caret igraph]; }; MRS = derive2 { name="MRS"; version="1.2.4"; sha256="1sksg70zb72ys1b7vi8amjaqarmdh8vf2l1rb0rasrlvrip3z3br"; depends=[igraph Rcpp RcppArmadillo]; }; MRTSampleSize = derive2 { name="MRTSampleSize"; version="0.3.0"; sha256="03c6jkanff241rcv1yixvmlnya3sd8hqpawf9dx9mpsri4pp6mdk"; depends=[]; }; - MRTSampleSizeBinary = derive2 { name="MRTSampleSizeBinary"; version="0.1.0"; sha256="081yr1yy6fxgqrix499rxkfjbp9zhlw6mksbpwv88hvbx3ymc7rg"; depends=[dplyr ggplot2 Matrix]; }; + MRTSampleSizeBinary = derive2 { name="MRTSampleSizeBinary"; version="0.1.1"; sha256="01kg6frglrhi55px2hsadjn9dbfz61hwj1q2m6jrm59b4cws0gcb"; depends=[dplyr ggplot2 Matrix]; }; MRmediation = derive2 { name="MRmediation"; version="1.0.1"; sha256="0v0kn6x4fwj35imj1fb2f2024ifb7081z4cwlhjmdxhabcy6xbx7"; depends=[fda MASS]; }; - MRsurv = derive2 { name="MRsurv"; version="0.2"; sha256="148myzk6r8whkpv1yv59dmdlr2n8vdwmaww165aw696xfjxwq550"; depends=[mvtnorm survival]; }; MSCMT = derive2 { name="MSCMT"; version="1.3.4"; sha256="1vh0i9nxqiy3qdnb7z7cn5kpp2jahdmaqpnv7q5650pkswhwmfpc"; depends=[ggplot2 lpSolve lpSolveAPI Rdpack Rglpk]; }; - MSCquartets = derive2 { name="MSCquartets"; version="1.1.0"; sha256="1rik3ma537qkj63j5v0gcf6g3qi68z49w21z96mm88b7nq15xpjh"; depends=[ape doParallel foreach phangorn RandomFieldsUtils Rdpack zipfR]; }; + MSCquartets = derive2 { name="MSCquartets"; version="1.1.1"; sha256="1dv6g860yxhkk6dd0sr0vvnpwb3fbpz7fvqjlcs5kcqisvcv5ya0"; depends=[ape doParallel foreach phangorn RandomFieldsUtils Rdpack zipfR]; }; MSCsimtester = derive2 { name="MSCsimtester"; version="1.0.0"; sha256="0k04fdprwa56vm6n372lipybgq1plhmjbxvp58wqmpgzpnhcxkvd"; depends=[ape kSamples Rdpack]; }; MSEtool = derive2 { name="MSEtool"; version="3.4.0"; sha256="1v3qld7gnsvf5aa0vmfiaj48irkawsl1nbxxi4rqbhbg60kb7zzm"; depends=[abind dplyr ggplot2 Rcpp RcppArmadillo snowfall]; }; MSG = derive2 { name="MSG"; version="0.8"; sha256="178209p30fmh3c03w8iakz306h2xswcj4ffxg1s9s8md156rbj7s"; depends=[RColorBrewer]; }; @@ -2925,12 +2837,13 @@ in with self; { MSGLasso = derive2 { name="MSGLasso"; version="2.1"; sha256="1k17vnvzr647pwfbdxrpqcsp34iygq86wf0ns4rq8cj6q5mik1bv"; depends=[]; }; MSMwRA = derive2 { name="MSMwRA"; version="1.5"; sha256="062d37h47p3sx65k5jh8n900dfzm1mvi18ikral3ajdhy7x2cif9"; depends=[]; }; MSPRT = derive2 { name="MSPRT"; version="3.0"; sha256="0fvikvnf3fa4ski9idg8llxx33bgkrfj5sgkjn0d1dz30kgcx2w2"; depends=[doParallel foreach ggplot2 ggpubr iterators nleqslv]; }; - MSQC = derive2 { name="MSQC"; version="1.0.2"; sha256="11wcy04cpjlnc71s2svs4lm1cp718dz1p4a1603x6zwpbf22bygn"; depends=[rgl]; }; + MSQC = derive2 { name="MSQC"; version="1.1.0"; sha256="1irs750n38513si9gw2fs9xibmlw0g3yd9w3rfcj7gbbgp2l6p4f"; depends=[rgl]; }; MSRDT = derive2 { name="MSRDT"; version="0.1.0"; sha256="1i35zsip6p177k9pnbmvkjdc1hpr6nclhbx2sfah95ls5v6xnzz8"; depends=[dplyr gtools reshape2]; }; MSSQL = derive2 { name="MSSQL"; version="1.0.0"; sha256="15glgn2dr1yygxps0mx68435zqc2hi4hvgr4rvgrwyxdnlm5g35y"; depends=[RODBC]; }; MST = derive2 { name="MST"; version="2.2"; sha256="0p833nyq9p0r0hy02f4sy6gv1wm9flj3dxkv73ihy8503r89bbzz"; depends=[Formula MASS partykit survival]; }; MSbox = derive2 { name="MSbox"; version="1.4.6"; sha256="1wlfbkjsw2bzznh6fwhfllgnj80zpfab82x43a83k3mjd41rf9f9"; depends=[crayon ggfortify ggplot2 plotly reshape2 stringr xml2]; }; MSclassifR = derive2 { name="MSclassifR"; version="0.2.0"; sha256="1450i3f3f02sp6bnvvwgj4r64bfkjcb5dbcyy5src3lmly6d6jdi"; depends=[caret dplyr e1071 fuzzyjoin ggplot2 glmnet MALDIquant MALDIquantForeign MALDIrppa metap mixOmics nnet reshape2 VSURF xgboost]; }; + MSclust = derive2 { name="MSclust"; version="1.0"; sha256="0v7y4yzhv28dwb1894yqnhzfbxnyc2ric93sfjwa757w6gas8928"; depends=[cluster GGally ggplot2 gtools Matrix mclust mnormt mvtnorm psych]; }; MScombine = derive2 { name="MScombine"; version="1.4"; sha256="0s3gbf3s5mf00d5mkbqhd9wwnyps7qb4r3zbal8j8nsaspql9nd3"; depends=[plyr]; }; MSiP = derive2 { name="MSiP"; version="1.3.7"; sha256="1n8yl5icd3qkpmx2knxsp4g6jvkbg6hl82jxg9apxkx4nmsvkawz"; depends=[caret dplyr e1071 magrittr mice plyr pROC PRROC ranger tibble tidyr]; }; MSwM = derive2 { name="MSwM"; version="1.5"; sha256="0ny5apvww1537qhiwb3f8x173rh7mypvgpw0i46dkvn897i0dq36"; depends=[nlme]; }; @@ -2940,11 +2853,11 @@ in with self; { MTE = derive2 { name="MTE"; version="1.0.2"; sha256="11kbh6sphzyn2k279sfpgyvr32hpggh98cz1saszlpsfg9l8xdn0"; depends=[glmnet quantreg rqPen]; }; MTLR = derive2 { name="MTLR"; version="0.2.1"; sha256="070121qn7vmxmxgvzv7ymhk19j9kxks4xa7qpd8vkc2rp3ara4cp"; depends=[Rcpp RcppArmadillo survival]; }; MTPS = derive2 { name="MTPS"; version="1.0.1"; sha256="1jdlw943ywmrp64w1qrjqymqjh2jahnq0i5px8af1l3msznj20x4"; depends=[class e1071 glmnet MASS rpart]; }; + MTS = derive2 { name="MTS"; version="1.2.1"; sha256="0nc1g5dbg42j0h5xg9psg5kqldp5w87in8ggzliixpsz3cilvry3"; depends=[fBasics fGarch mvtnorm Rcpp RcppEigen]; }; MTSYS = derive2 { name="MTSYS"; version="1.2.0"; sha256="04dkan3hxl3difflskp7d1lw1bvxhg4s28ssy2v4m7z7wbpj3v1m"; depends=[]; }; MUACz = derive2 { name="MUACz"; version="2.1.0"; sha256="1d771vb2aimr87kyqj7zkmwarmxcxzbh7mvr396pf2zr3h8wi30c"; depends=[dplyr epiDisplay ggplot2]; }; MUS = derive2 { name="MUS"; version="0.1.6"; sha256="0xid624rz0mvd03iy7ydvmx7gkscvsg4kdbaf2nji54ahai3pmn3"; depends=[]; }; MVA = derive2 { name="MVA"; version="1.0-8"; sha256="1xd75qah05jrljl72gr8xzhfj43mnf821jnjv38gflavkvyn89mv"; depends=[HSAUR2]; }; - MVB = derive2 { name="MVB"; version="1.1"; sha256="0an8b594rknlcz6zxjva6br8f34sgwdi2jil3xh1xzb5fa55dw0f"; depends=[Rcpp RcppArmadillo]; }; MVLM = derive2 { name="MVLM"; version="0.1.4"; sha256="1zcj405dc4jbiqw6p0fcbam8yc9d6yjpmrx5wjw5zjvig3iqb91k"; depends=[CompQuadForm]; }; MVN = derive2 { name="MVN"; version="5.9"; sha256="014s07nxq014j5hkbd6iwwqykcw8si5sah57gi3n0wb51sv8ip1k"; depends=[boot car energy MASS moments nortest plyr psych]; }; MVNBayesian = derive2 { name="MVNBayesian"; version="0.0.8-11"; sha256="1iaxyp480v91887cn4w3l74907wvbzs3ay4cjgzd8xk2dp47w8bg"; depends=[mvtnorm plyr]; }; @@ -2975,22 +2888,19 @@ in with self; { MapeBay = derive2 { name="MapeBay"; version="0.1.0"; sha256="1w1lpnm8fd5gmv4ggrlmkaaj45wyx3yclx3fb2mdrp7iyg4rx34c"; depends=[BH broom car dplyr DT heplots highcharter htmltools MANOVA_RM moments MultBiplotR MVN mvnormtest nortest purrr Rcpp RcppEigen RcppParallel reshape rstan rstantools shiny shinycssloaders shinydashboard shinydashboardPlus StanHeaders stringr tibble vegan waiter]; }; MareyMap = derive2 { name="MareyMap"; version="1.3.6"; sha256="0zbg72vck9p14zk1924407n5ap84qiisqhbq1vr715sw67fwdcxi"; depends=[]; }; MargCond = derive2 { name="MargCond"; version="1.0.0"; sha256="07qh1lgy8ds11cwlb4rxkl6aiph91zq29sy27b8wwxalycdgjrg8"; depends=[gee lme4 MASS Matrix]; }; - MarginalMediation = derive2 { name="MarginalMediation"; version="0.7.0"; sha256="0jwp8rzv0ghir8k7dfmfrq4rvcqf7xww6va16p3jj2nk3r9hiq0x"; depends=[betareg boot cli crayon furniture magrittr purrr rstudioapi stringr tibble]; }; + MarginalMediation = derive2 { name="MarginalMediation"; version="0.7.2"; sha256="0a19ww8i04z8a4a6hia4myssfam57fdx59mc4n9dzrbyy293ckx2"; depends=[boot cli crayon furniture magrittr purrr rstudioapi stringr tibble]; }; MarketMatching = derive2 { name="MarketMatching"; version="1.2.0"; sha256="075maishssvjrx0jfmxcfiv2rlhnm0c4dnp6ija3bn5z80i6z91m"; depends=[Boom bsts CausalImpact doParallel dplyr dtw foreach ggplot2 iterators reshape2 scales tidyr utf8 zoo]; }; - Markovchart = derive2 { name="Markovchart"; version="2.1.4"; sha256="12wbirvz90k6aak3dijn0dq3x8gxz7842n4nrgxkd2d0szysrciq"; depends=[doParallel foreach ggplot2 metR optimParallel]; }; + Markovchart = derive2 { name="Markovchart"; version="2.1.5"; sha256="0rvpj7zpcq2jv2sajnlhv36g76r3c3dlr0p1yyi96qi1q653yvjj"; depends=[doParallel foreach ggplot2 metR optimParallel]; }; MarkowitzR = derive2 { name="MarkowitzR"; version="1.0.2"; sha256="0p234zs7lvi83fv02mijrhp7hmr5cklddayb61krhx1h2hn4gzb9"; depends=[gtools matrixcalc]; }; Massign = derive2 { name="Massign"; version="1.1.0"; sha256="09i32lsrx40rxrnb9alfipfrkipy4mza5nr4gcpn2a5h86ak9290"; depends=[]; }; - MasterBayes = derive2 { name="MasterBayes"; version="2.57"; sha256="0f8rc6799nji03slal27gbmprndy3dby0hhsmg2rm9l4ki44vz2y"; depends=[coda genetics gtools kinship2]; }; MatManlyMix = derive2 { name="MatManlyMix"; version="1.1.1"; sha256="1d2vd5b9lirdybjclxh0nn4mghq64qjj4l8vnj95cni5pfa18a2c"; depends=[]; }; MatSkew = derive2 { name="MatSkew"; version="0.1.5"; sha256="019v2b1r0bvw84xs50smjb3jdz7gd2adz5d84xd8zq43lnml96d1"; depends=[]; }; - MatTransMix = derive2 { name="MatTransMix"; version="0.1.15"; sha256="1s2wmhiqn024x9l217xak3wp3dbd3mfrih70xc5mc1b4555f2fbm"; depends=[mvtnorm]; }; MatchIt = derive2 { name="MatchIt"; version="4.3.4"; sha256="052dv7zk156qlrg5j4kjzr3mryj1g7cmbc5zal7vky6ss87ahid6"; depends=[backports Rcpp RcppProgress]; }; - MatchLinReg = derive2 { name="MatchLinReg"; version="0.7.3"; sha256="1si0zn6vlgyj08841hfjx8an96a8ipnawl4zbalabmpy7r5bfwx8"; depends=[Hmisc Matching]; }; MatchThem = derive2 { name="MatchThem"; version="1.0.1"; sha256="1g3vzbxrbmgmxlnn6i2i1wdk949i547ywgxcw05na71kc1nvwvfd"; depends=[MatchIt mice rlang survey WeightIt]; }; - Matching = derive2 { name="Matching"; version="4.9-11"; sha256="123np8gwjrbmkl65kj7qfa52i9msnkjyhvj4pwwqh5mkca2clw8w"; depends=[MASS]; }; + Matching = derive2 { name="Matching"; version="4.10-2"; sha256="1q7crkamzn6qjinc3dp4hm1fihh9hil55p10nnr8f5iwamhxqx8y"; depends=[MASS]; }; Matrix = derive2 { name="Matrix"; version="1.4-1"; sha256="0zigzgx4dv7ydcyppr5ypna9dxi9vzi944pgy07jnj4l3qflzcj2"; depends=[lattice]; }; Matrix_utils = derive2 { name="Matrix.utils"; version="0.9.8"; sha256="0a5fq1scykqk0kc9j051j6fix6j2dqwz5wbgb0amaxsiywz9vigb"; depends=[grr Matrix]; }; - MatrixCorrelation = derive2 { name="MatrixCorrelation"; version="0.9.5"; sha256="192pmfm8csvs2lf2hxpsj542lrd8b74rg4wzmz3s3m9i98pd0h4d"; depends=[plotrix pracma progress Rcpp RcppArmadillo RSpectra]; }; + MatrixCorrelation = derive2 { name="MatrixCorrelation"; version="0.10.0"; sha256="1na3y1crlj57c1xq9ja3v94cx2dr0myrlx9bxvhhwss3q3r1lgby"; depends=[plotrix pracma progress Rcpp RcppArmadillo RSpectra]; }; MatrixEQTL = derive2 { name="MatrixEQTL"; version="2.3"; sha256="10r6h5bidj44kfbwiml9pkysbikqphfb21ig61qnx0qa12xcl6l8"; depends=[]; }; MatrixExtra = derive2 { name="MatrixExtra"; version="0.1.9-1"; sha256="098apgqlncgxspa8mi4bx2nk5fbk3880whqiwkvydsfsqrbv1sj0"; depends=[float Matrix Rcpp RhpcBLASctl]; }; MatrixLDA = derive2 { name="MatrixLDA"; version="0.2"; sha256="0fixq35gp0fzmin75sfld2ln0zvnjgzrhk3b5yi7wdqzp99200yy"; depends=[glasso plyr Rcpp RcppArmadillo]; }; @@ -3021,7 +2931,6 @@ in with self; { MetABEL = derive2 { name="MetABEL"; version="0.2-0"; sha256="0rqjv85mgswrbbp8b8ip6cdmz0cvfy9lm5mcr8a7h38rzgx3g3i3"; depends=[]; }; MetAlyzer = derive2 { name="MetAlyzer"; version="0.1.0"; sha256="1mqc2037q71n1k7ncym52vn0cc5ndsxq4r87k492lp1b3i7h1wi3"; depends=[agricolae dplyr openxlsx rlang tibble tidyr]; }; MetBrewer = derive2 { name="MetBrewer"; version="0.2.0"; sha256="0x51g5z9cdl043rna9qh4cj16qxahb6ccj9d8rr9d43d860jigp7"; depends=[ggplot2]; }; - MetFns = derive2 { name="MetFns"; version="3.2.2"; sha256="15fd2d0yysibi2x43qv6b8i1pa18l7z4n0zpmrqhsmvqkgy8sla0"; depends=[astroFns lubridate plotrix pracma]; }; MetGen = derive2 { name="MetGen"; version="0.5"; sha256="00yzaicrpwfnxi5mdzwx1ai721vczkkf2yl50q9wwpxhmfx0xbbh"; depends=[chron glmnet MASS]; }; MetNorm = derive2 { name="MetNorm"; version="0.1"; sha256="0vfi3k0yp2dz47gwj1n1avs3ji0a2nlrrljz5d0l66zfh4474jb4"; depends=[]; }; MetProc = derive2 { name="MetProc"; version="1.0.1"; sha256="1z6538pij1rq5wv9s8rjcn0sck15y26asv4vamav8a6s4135ia3q"; depends=[fastcluster gplots]; }; @@ -3038,27 +2947,25 @@ in with self; { MetaStan = derive2 { name="MetaStan"; version="1.0.0"; sha256="00rj11q20apw7f5s6vw8fh7qxgfksndyiks1w907zzjlxhy9b4pj"; depends=[BH coda forestplot HDInterval loo metafor Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; MetaSubtract = derive2 { name="MetaSubtract"; version="1.60"; sha256="19xg95g2qgyi90pz3733l596gzdj6dmb0k9i4qmhaq4yck69rrhj"; depends=[]; }; MetaUtility = derive2 { name="MetaUtility"; version="2.1.2"; sha256="0pddp4h7jk2y140yiw4j5661011v1ym1dnb4ds9ai6i3iic23373"; depends=[dplyr metadat metafor purrr rlang stringr tidyr]; }; - MetaboList = derive2 { name="MetaboList"; version="2.0"; sha256="10skvf14ls4qll0l9p6cig4lmj7138khcksyjvd1pqym9axk3wxn"; depends=[dplyr enviPick ggplot2 scales]; }; MetaboQC = derive2 { name="MetaboQC"; version="1.1"; sha256="1rrhssm882xkp6ydgy3qba9c7ww3p6vxy04z4v7v6v7ilc5bvrgi"; depends=[plyr]; }; MetabolAnalyze = derive2 { name="MetabolAnalyze"; version="1.3.1"; sha256="070qws759nczjrfdlh7jpbyjz4z3zm1hzb7vcvfgfks82wwb2ny0"; depends=[ellipse gplots gtools mclust mvtnorm]; }; MetabolicSurv = derive2 { name="MetabolicSurv"; version="1.1.2"; sha256="1c8i3a3gnbvlkjh0vqmz1igzaf8q87cb55l3kijwi0z23ywrbqch"; depends=[dplyr ggplot2 glmnet matrixStats pls Rdpack rms superpc survival survminer tidyr]; }; MetabolomicsBasics = derive2 { name="MetabolomicsBasics"; version="1.2"; sha256="0gd93l9rm00x9g6ffppywpbccmhxgl4s4z4ba7al8lpjval9srzw"; depends=[C50 caret e1071 mixOmics pcaMethods plyr rlang ropls rpart]; }; - MetaculR = derive2 { name="MetaculR"; version="0.2.0"; sha256="1ga93jl0nwwqzl4lnfjm60ivgjl2k0s6nl2zjnw27qzqpdpnrasb"; depends=[dplyr ggplot2 httr jsonlite magrittr progress tidyr verification]; }; + MetaculR = derive2 { name="MetaculR"; version="0.4.1"; sha256="130ic9q221lmnr5wzmw7bbskqzi5gmw8ark5zpw3y8wy9zbv2m98"; depends=[assertthat clipr cowplot dplyr ggplot2 ggrepel httr jsonlite magrittr progress spatstat_geom tidyr verification]; }; MetaheuristicFPA = derive2 { name="MetaheuristicFPA"; version="1.0"; sha256="096k866mgrdgj55rzvdj080z80hzlj0667mydpz7gjaqdfriw8jg"; depends=[Rcpp RcppArmadillo]; }; Metatron = derive2 { name="Metatron"; version="0.1-1"; sha256="0apz2k3za19px1bcg4ls0axaljrpxnqhs86b6s862c370sspc1x8"; depends=[lme4 Matrix mpt]; }; MethComp = derive2 { name="MethComp"; version="1.30.0"; sha256="1vmwb4zw4gm2x0j2nzm2vjfj7x19ws8njr6dcglzjpbbha7nxjp6"; depends=[coda nlme rjags]; }; MethodCompare = derive2 { name="MethodCompare"; version="0.1.2"; sha256="1nxr2fgmfixjkdparavi156qqqchjwaxpjk9i2xgc1yhp1p01pll"; depends=[nlme]; }; - Methplot = derive2 { name="Methplot"; version="1.0"; sha256="0aaqss9zfn55qi45jffxkksnkw510npjnkygafx49vl77bkagqh5"; depends=[ggplot2 reshape]; }; MethylCapSig = derive2 { name="MethylCapSig"; version="1.0.1"; sha256="16ch9aldr6a9jn42h387n7qvnzs0yx28f2yj6xq0kp476q7rf4ql"; depends=[geepack]; }; Metrics = derive2 { name="Metrics"; version="0.1.4"; sha256="0fh8qbjlwzagh272lgwr4bxcqcjb1qpz53mgs8rzlvncax6nk5bk"; depends=[]; }; MetricsWeighted = derive2 { name="MetricsWeighted"; version="0.5.4"; sha256="1hv2bgd64km303l09kva0pa9wx95f82qa9c4zl8nrmfhi2dvckqh"; depends=[]; }; MfUSampler = derive2 { name="MfUSampler"; version="1.0.6"; sha256="0lw60dnlkcs59wf5yzqj3yq8k529s5mrjj33nyvzqgqqmln9v1x8"; depends=[ars coda HI]; }; MiDA = derive2 { name="MiDA"; version="0.1.2"; sha256="144gxsxqljzskxsw5k0y69ix0pxlfvyyznxkjpf2ng4l47pg11z5"; depends=[caret gbm genefilter limma preprocessCore pROC SQN]; }; + MiMIR = derive2 { name="MiMIR"; version="1.2"; sha256="06xmj94cnyxcdj4f8vbxhfrmg3rraj1as2kq0k1ps0fplfb1y8ap"; depends=[caret dplyr DT foreach ggplot2 glmnet heatmaply matrixStats pkgload plotly plyr pROC purrr shiny shinycssloaders shinydashboard shinyFiles shinyjs shinyWidgets survival survminer]; }; MiRKAT = derive2 { name="MiRKAT"; version="1.2.1"; sha256="1ypxs6p8jzd2y5rxbfrr2z1xib6im9i58wvcz4cqcgpw298w7ard"; depends=[CompQuadForm GUniFrac lme4 MASS Matrix mixtools PearsonDS permute quantreg survival]; }; MiRNAQCD = derive2 { name="MiRNAQCD"; version="1.1.2"; sha256="1alpa7xsk669rsh0s7kjdnk1ymlfm81rw011pk29fi7p2jc505iv"; depends=[ggplot2 pROC]; }; MiRSEA = derive2 { name="MiRSEA"; version="1.1"; sha256="0jpl6ws5yx1qjzdnip9a37nmvx81az4cbsjm57x613qjpwmg6by3"; depends=[]; }; MiSPU = derive2 { name="MiSPU"; version="1.0"; sha256="1l6q0fm5z5i6gigr940h8kc5rka08psmhcprp8grmsxk3qy2kply"; depends=[ape aSPU cluster Rcpp RcppArmadillo vegan]; }; - MiST = derive2 { name="MiST"; version="1.0"; sha256="0gqln792gixqfh201xciaygmxbafa0wyv5gpbg9w5zkbbv44wrfk"; depends=[CompQuadForm]; }; MicSim = derive2 { name="MicSim"; version="1.1.0"; sha256="0nkprbb9lgnfzl1bj0k4rkd7v8g35cvhl9bqa91q2lc2rimzfl20"; depends=[chron rlecuyer snowfall]; }; MicroDatosEs = derive2 { name="MicroDatosEs"; version="0.8.2"; sha256="0k0hmi3ciipizmgjw1i5rrsg34yx21s1msn40vc4qc9s1n4wd8dl"; depends=[readr]; }; MicroMacroMultilevel = derive2 { name="MicroMacroMultilevel"; version="0.4.0"; sha256="1q5cyqr4hdl1wp2isk6p4p084i83kg6hd406wdp1nj9lv5i0xvgw"; depends=[]; }; @@ -3075,7 +2982,7 @@ in with self; { MitoHEAR = derive2 { name="MitoHEAR"; version="0.1.0"; sha256="1lb36w374wjp6f9ydkas21rwc2shlav1xq2rfzig1k034fkva8bj"; depends=[Biostrings circlize ComplexHeatmap dynamicTreeCut GenomicRanges ggplot2 gridExtra IRanges magrittr mcclust rdist reshape2 rlist Rsamtools]; }; MittagLeffleR = derive2 { name="MittagLeffleR"; version="0.4.1"; sha256="1qlz418im27v7q3xk09a2w3zdx7ky5imcyi3kpg1s3bz5zx57p2f"; depends=[stabledist]; }; MixAll = derive2 { name="MixAll"; version="1.5.1"; sha256="1jsh29ygy1n7lbz93ks725li9hnvfa0kp1qik13m72nmgw7g7q5a"; depends=[Rcpp rtkore]; }; - MixGHD = derive2 { name="MixGHD"; version="2.3.6"; sha256="0vx32ay7r8d22j53fsi6ff8l2zg97524dy7ir59ldafjfn15nc7k"; depends=[Bessel cluster e1071 ghyp MASS mixture mvtnorm numDeriv]; }; + MixGHD = derive2 { name="MixGHD"; version="2.3.7"; sha256="0l1qivl9a5b8rayg9srxlgkk4wilv2m9yw4lsca29s5wd3wpyksv"; depends=[Bessel cluster e1071 ghyp MASS mixture mvtnorm numDeriv]; }; MixMAP = derive2 { name="MixMAP"; version="1.3.4"; sha256="0gxghym5ghbyxf589hda2fhv5l3x5jvm6i40x5xdwx4hadcn8k9a"; depends=[lme4]; }; MixMatrix = derive2 { name="MixMatrix"; version="0.2.6"; sha256="007vx59v5h3pfawg6slqgbs3b8dvbhcfh4cvasfydidiiyaggjdc"; depends=[CholWishart Rcpp RcppArmadillo]; }; MixOptim = derive2 { name="MixOptim"; version="0.1.2"; sha256="14blyb1dqbdb14rby4nrggpqdx6b43lbb2xwi3059biq9mrj3a2x"; depends=[desirability ggplot2 patchwork rlang]; }; @@ -3084,7 +2991,7 @@ in with self; { MixSIAR = derive2 { name="MixSIAR"; version="3.1.12"; sha256="07wiv7x2c9mhqk37zndxvdb76m9shizc48qz2bp2f4g5z9hciid7"; depends=[bayesplot coda ggmcmc ggplot2 lattice loo MASS MCMCpack R2jags RColorBrewer reshape reshape2 splancs]; }; MixSim = derive2 { name="MixSim"; version="1.1-5"; sha256="16l27y8wgy44zpavl3as0qdm1csjrmh2iy7idd2j6l8cba8z2l0i"; depends=[MASS]; }; MixTwice = derive2 { name="MixTwice"; version="2.0"; sha256="11j591z1pnql84sfczvry7mg4hs0jghgp170y5j5wwhs7l5kc7r7"; depends=[alabama ashr fdrtool Iso]; }; - MixedIndTests = derive2 { name="MixedIndTests"; version="0.8.0"; sha256="0hafcz05042nhl8qwrjhr04k6xwz4pkd90ca7vcyijcay2nvx20z"; depends=[copula doParallel foreach ggplot2 survey]; }; + MixedIndTests = derive2 { name="MixedIndTests"; version="0.9.1"; sha256="1g6hrh7488yg00i6nm9z6hyvawk3vc6qk60dvzpl6ff0s4vj4wqy"; depends=[copula doParallel foreach ggplot2 survey]; }; MixedPoisson = derive2 { name="MixedPoisson"; version="2.0"; sha256="0g5mpzj0wda6g46q3cg5mm3x4dvpz9gdclzn2m17l62lzny2i10p"; depends=[gaussquad MASS Rmpfr]; }; MixedPsy = derive2 { name="MixedPsy"; version="1.1.0"; sha256="1iz3cl19xlznzbqxvichbjhyhams4v9611p9094r6q5fpmf71p88"; depends=[beepr boot brglm ggplot2 lme4 Matrix mnormt]; }; MixedTS = derive2 { name="MixedTS"; version="1.0.4"; sha256="0gwcg115idbcm5llgzqsygvqgshq8dywawxkaddsmw4sbbhj4555"; depends=[MASS]; }; @@ -3092,11 +2999,12 @@ in with self; { MixtureInf = derive2 { name="MixtureInf"; version="1.1"; sha256="12qcflmrpzh4w5b40xq5qicks6p0cwqpf5k84pwabkjb168afddv"; depends=[quadprog]; }; MixtureMissing = derive2 { name="MixtureMissing"; version="1.0.2"; sha256="03ql591891jvhycagkjl5gj83mjlrv5m95kpgkgph8gim71q2di1"; depends=[cluster ContaminatedMixt MASS mnormt mvtnorm rootSolve]; }; MixtureRegLTIC = derive2 { name="MixtureRegLTIC"; version="1.0.0"; sha256="052gyk4gqv49fa2rxbxnib29f1vjxiw4q8llkfhsv8kw5pw38699"; depends=[]; }; + MixviR = derive2 { name="MixviR"; version="3.3.5"; sha256="0fh4g5dmr1pzrgnpm610xkgw26f3rwfpnycy8r825h81wmgz073h"; depends=[Biostrings dplyr DT ggplot2 glue httr lubridate magrittr plotly readr shiny stringr tidyr vcfR]; }; MoBPS = derive2 { name="MoBPS"; version="1.6.64"; sha256="12czwx362pn0crj047rqb9ambl1fw73k474i7vcxhz53kbw21wj0"; depends=[]; }; MoEClust = derive2 { name="MoEClust"; version="1.5.0"; sha256="1w9xb35xlh0j020fpf7ivji46rbg7fyvqrf7a695rr8da6lpiiif"; depends=[lattice matrixStats mclust mvnfast nnet vcd]; }; MoLE = derive2 { name="MoLE"; version="1.0.1"; sha256="0bq19vwqjn5hl4mw5imkydbp39gal992vnh2dwrq8bb8cmj3qh91"; depends=[]; }; MoMPCA = derive2 { name="MoMPCA"; version="1.0.1"; sha256="1snixlq35xbzf005d877i493sf1wm48jqlq9515yl1s6lxmav1n7"; depends=[doParallel dplyr foreach magrittr Matrix slam tm topicmodels]; }; - MoTBFs = derive2 { name="MoTBFs"; version="1.4"; sha256="1b69wzsy0wnzgbk04x363wb1dfnxz610sn8d28cn2akvf7n8na70"; depends=[bnlearn ggm lpSolve Matrix quadprog]; }; + MoTBFs = derive2 { name="MoTBFs"; version="1.4.1"; sha256="03c1k5vvswlhbsivw6yznw1v0cdl8avs514iaa2v2994j2yk40j6"; depends=[bnlearn ggm lpSolve Matrix quadprog]; }; MobileTrigger = derive2 { name="MobileTrigger"; version="0.0.31"; sha256="1zbnxdxh6gr4sgpi10i0pnd85f7i842105jgjswacziqamby6mcy"; depends=[caret ggplot2 kableExtra knitr mailR plyr XML yaml]; }; ModStatR = derive2 { name="ModStatR"; version="1.3.1"; sha256="16mfggplpmjz2kspfa99q4gbm4avm306d83n8hiki382094li1ni"; depends=[boot ellipse gsl hypergeo jmuOutlier]; }; ModTools = derive2 { name="ModTools"; version="0.9.4"; sha256="111rhdw917rynwsh6l6nsma5pjyi3ix9gjy5fx620d6ywcq7b227"; depends=[AER C50 car class DescTools e1071 lattice lmtest MASS naivebayes NeuralNetTools nnet pROC pscl randomForest relaimpo robustbase rpart rpart_plot sandwich survival]; }; @@ -3117,10 +3025,8 @@ in with self; { MonoPoly = derive2 { name="MonoPoly"; version="0.3-10"; sha256="0ls3sjfkinp9c5002ww0xm4l2galf20w2f45nm5irkk9sbqas0jq"; depends=[quadprog]; }; Monte_Carlo_se = derive2 { name="Monte.Carlo.se"; version="0.1.0"; sha256="1d5gp4wvpvrlp82g8k8v668mzhmdlk2pvky34v7hxysap9xgmsqr"; depends=[]; }; MonteCarlo = derive2 { name="MonteCarlo"; version="1.0.6"; sha256="1jwq3by8zfy6sbzahcj5l0vicqn7yyqpb7xhfsaymfspm7xyq6pj"; depends=[abind codetools reshape rlecuyer snow snowfall]; }; - MonteCarloSEM = derive2 { name="MonteCarloSEM"; version="0.0.3"; sha256="1kamhwqw3px5l4pz50zksfsfhjv03wc31xi8v6fl6h9xxmvw52gd"; depends=[lavaan Matrix]; }; Morpho = derive2 { name="Morpho"; version="2.9"; sha256="1gsns3ab9x24czl53p15cja9vw881iwnhc0ix50i8vzkx184wsib"; depends=[bezier colorRamps doParallel foreach jsonlite MASS Matrix Rcpp RcppArmadillo rgl Rvcg]; }; MorphoTools2 = derive2 { name="MorphoTools2"; version="0.9.1.2"; sha256="0ddjk39jz46xnig1b6iv5qdpxmwh76i4axfchghiy17hbpacbdlg"; depends=[ade4 candisc car class ellipse heplots MASS plot3D StatMatch vegan]; }; - MorseGen = derive2 { name="MorseGen"; version="1.2"; sha256="1kq35n00ky70zmxb20g4mwx0hn8c5g1hw3csmd5n6892mbrri8s9"; depends=[]; }; MortCast = derive2 { name="MortCast"; version="2.7-0"; sha256="1hw20wb0sl8q09vv68hid90ma2ml866kglsjf38kqky1whmihfbc"; depends=[wpp2017]; }; MortalityGaps = derive2 { name="MortalityGaps"; version="1.0.0"; sha256="0nfm8xa7gnshrl8hsvmvr3za8nbppp7f7i5h4ni204w7xwvh8jxc"; depends=[crch forecast MASS pbapply]; }; MortalityLaws = derive2 { name="MortalityLaws"; version="1.9.3"; sha256="12sfc4lhp01caknpw25gmchh8gv2wjlgpq0lby7iayl9lnsg1x92"; depends=[minpack_lm pbapply RCurl tidyr]; }; @@ -3130,11 +3036,10 @@ in with self; { Mqrcm = derive2 { name="Mqrcm"; version="1.2"; sha256="1alfv76b90frimihjcq8whzqkwvhnnw2fd92nrfpnfj5dw0b56f5"; depends=[Hmisc pch]; }; MrSGUIDE = derive2 { name="MrSGUIDE"; version="0.1.2"; sha256="1hd0lvvy12r6kxa64vwnjavyv2f7a9jqgjxgmlw86wwh5g09hvfd"; depends=[BH magrittr Rcpp RcppArmadillo yaml]; }; MtreeRing = derive2 { name="MtreeRing"; version="1.4.5"; sha256="1i6ljz950n9fpgci9b5777dg3b88ihhz8jvyw621hg218imswhxz"; depends=[bmp dplR dplyr imager jpeg magick magrittr measuRing png shiny shinydashboard shinyWidgets spatstat_geom tiff]; }; - MuChPoint = derive2 { name="MuChPoint"; version="0.6.1"; sha256="15bqsc7bsjg55qxjwxh58bxbwz61a6wv4xxph994g4020b98l01x"; depends=[capushe Matrix Rcpp shiny]; }; - MuFiCokriging = derive2 { name="MuFiCokriging"; version="1.2"; sha256="09p8wdmlsf21ibqyjigwdipcin3ij0naxcd035hqgfj76v20wiyv"; depends=[DiceKriging]; }; + MuChPoint = derive2 { name="MuChPoint"; version="0.6.3"; sha256="0mixy2rcr23rk823r1r3s2bhr22dhsx56xvkk0djvfdb60pq0kfh"; depends=[capushe Matrix Rcpp shiny]; }; MuMIn = derive2 { name="MuMIn"; version="1.46.0"; sha256="0290dn4vw082rp4ps324bdpbifzmjs4jqca9c33yky7004qwklik"; depends=[Matrix nlme]; }; MuViCP = derive2 { name="MuViCP"; version="1.3.2"; sha256="1wkiwdz4bblxf1zr57khljqkga9ks9aj1lnidvmhib94q6b8fnf4"; depends=[gtools MASS sm]; }; - MullerPlot = derive2 { name="MullerPlot"; version="0.1.2"; sha256="0am5brdmbh2mw74fbw9nha6h4qlhj8psg3142mql1ad99bd0zg4w"; depends=[RColorBrewer]; }; + MullerPlot = derive2 { name="MullerPlot"; version="0.1.3"; sha256="17n3w76a1fqqirshd754pi0p302pi1bld3iv4zi0g7q9ml2q42iw"; depends=[RColorBrewer]; }; MultAlloc = derive2 { name="MultAlloc"; version="1.2"; sha256="0c3sqfaa08s8mk4yz77kh6q6v9ic5xp52g9prfw1k2kv4nw1k2qd"; depends=[Rglpk]; }; MultBiplotR = derive2 { name="MultBiplotR"; version="1.3.30"; sha256="0cnn8m4yd2w0izbsvrlqgxif41554nq3hj7m169lxwxrb0csybcf"; depends=[car dae deldir dunn_test geometry GPArotation gplots Hmisc lattice MASS mirt mvtnorm optimr polycor rgl scales xtable]; }; MultEq = derive2 { name="MultEq"; version="2.4"; sha256="0x0mfmrfcjdv7v5nlakmjh2ilmgn15xgzc4qgm6djkif6565v46i"; depends=[]; }; @@ -3142,11 +3047,10 @@ in with self; { MultNonParam = derive2 { name="MultNonParam"; version="1.3.6"; sha256="034a6yx2z93llkg7m3f20ibajwc2m23i13jqsk3fpgzx6f1dnbfk"; depends=[ICSNP]; }; MultOrdRS = derive2 { name="MultOrdRS"; version="0.1-2"; sha256="0bra4z37njkcgah3a1k6mxcnmxq85188jywhgx3fdb1wnv5ic549"; depends=[Rcpp RcppArmadillo statmod]; }; MultSurvTests = derive2 { name="MultSurvTests"; version="0.2"; sha256="04crh4hbfhl8cr0faawv71lyabyilhxpg6i8sr9ki80982mbzcnd"; depends=[Rcpp RcppArmadillo Rdpack]; }; - MultiATSM = derive2 { name="MultiATSM"; version="0.1.1"; sha256="0c9vjlpyn0gm46mwhcvni3vw9k5djbw3aiws1pz1aih93pdsyvrx"; depends=[ggplot2 hablar pracma wrapr zoo]; }; + MultiATSM = derive2 { name="MultiATSM"; version="0.2.1"; sha256="1s90wajh9as1vpdwnpbsh9ic469hbgikppjizz33vv1181yjf1kx"; depends=[ggplot2 hablar pracma wrapr zoo]; }; MultiBD = derive2 { name="MultiBD"; version="0.2.0"; sha256="1qjfr8hx8sr5m8370yzi09r8jnh3i6907wzj3v4h83vmjh81db71"; depends=[BH Rcpp RcppParallel]; }; MultiCNVDetect = derive2 { name="MultiCNVDetect"; version="0.1-1"; sha256="0mfisblw3skm4y8phfg4wa0rdchl01wccarsq79hv63y78pfhh13"; depends=[]; }; MultiFit = derive2 { name="MultiFit"; version="1.1.1"; sha256="086bnqp61mfanrhi7dqaq5j2ddg3rfiyms0f5wj34svcjal9wjvc"; depends=[data_table Rcpp RcppArmadillo]; }; - MultiGHQuad = derive2 { name="MultiGHQuad"; version="1.2.0"; sha256="00prkn5awxrh365j1jz312har1x4p8v52a0sqfy00pqr44ncmqqq"; depends=[fastGHQuad Matrix mvtnorm]; }; MultiGroupO = derive2 { name="MultiGroupO"; version="0.1.0"; sha256="18d7wfsfyqzrjicp2grfgh582pr6a1fqx7xbnqaj93x3w30pxscg"; depends=[cowplot expm ggplot2 ggrepel gplots gridExtra mgm mvtnorm plsgenomics qgraph rlist]; }; MultiHorizonSPA = derive2 { name="MultiHorizonSPA"; version="1.0.0"; sha256="04361yz2l3zwg30m5i3zd6lsclxis9shy9hi17x4s62hskjav12h"; depends=[matlab]; }; MultiJoin = derive2 { name="MultiJoin"; version="0.1.1"; sha256="0cfk6yc5jagj9y8xybw6yg0yph4zah2vzaxv0384ad6r0r3x3nm8"; depends=[]; }; @@ -3174,10 +3078,11 @@ in with self; { MvBinary = derive2 { name="MvBinary"; version="1.1"; sha256="1lrrxvphxv4gmlazx67q4bck9373nqylqgkwcjzwb52291a3zyiv"; depends=[mgcv]; }; My_stepwise = derive2 { name="My.stepwise"; version="0.1.0"; sha256="10wka6kzk8krwdsyjfnn78dfqflq4zg3vjkk0i2ywjm5vap6aqa5"; depends=[car lmtest survival]; }; Mychisq = derive2 { name="Mychisq"; version="0.1.3"; sha256="0667ldi1qm47cpdr0j7gv7c6f8s5wj7naqcgv9harrsmm4vsr4w6"; depends=[]; }; - N2H4 = derive2 { name="N2H4"; version="0.6.1"; sha256="00bbdy2f4bsb8b4j6n2zhmp7zif79yx14g4f4jylh1050r1y31rk"; depends=[dplyr httr jsonlite lubridate rvest tibble urltools]; }; + N2H4 = derive2 { name="N2H4"; version="0.6.3"; sha256="18vlqh6c2f8kkfy3cnzpai0hs32d4x3rf92xir3f965saj68j8s5"; depends=[dplyr httr jsonlite rvest tibble urltools]; }; N2R = derive2 { name="N2R"; version="1.0.1"; sha256="12bv7xx6j6222qgpv6g61i68017fz0x6fjg9a9k5yhgw3zk05hpk"; depends=[Matrix Rcpp RcppEigen RcppSpdlog]; }; NACHO = derive2 { name="NACHO"; version="1.1.0"; sha256="0ji9kcfbnsrn6h4p0y0ly5nwyfwh3y01wm80a7syg4mjj0nd4z0g"; depends=[cli crayon dplyr ggbeeswarm ggforce ggplot2 ggrepel knitr magrittr purrr rlang rmarkdown rstudioapi scales sessioninfo shiny shinyWidgets tibble tidyr]; }; NADA = derive2 { name="NADA"; version="1.6-1.1"; sha256="0jp4mqr77cx7q5lff84s6wb0dwjy9mi0jyhbjc5fsx50bdczc3v7"; depends=[survival]; }; + NADA2 = derive2 { name="NADA2"; version="1.0.2"; sha256="0rmjbjqyh2acqlmfvaq3mpr3yhi0jwy36kgh975ipijh0awj2jci"; depends=[cenGAM coin EnvStats fitdistrplus Kendall mgcv multcomp NADA perm survival survminer vegan]; }; NADIA = derive2 { name="NADIA"; version="0.4.1"; sha256="11ijx9zs9r7s83mjhr7j6wrhz03mhwcrfsl4km6izmm36qa2vslm"; depends=[Amelia data_table doParallel foreach glmnet mice missForest missMDA missRanger mlr3 mlr3learners mlr3pipelines paradox softImpute testthat VIM]; }; NAEPirtparams = derive2 { name="NAEPirtparams"; version="1.0.0"; sha256="0qhfmkhi38z27ky3xbkvra5r6lw3kj9p3xrblm9j2657rj9kxc9j"; depends=[]; }; NAEPprimer = derive2 { name="NAEPprimer"; version="1.0.1"; sha256="19p1livdnayfcl88f8r9x1vg30x522q8lgx66pfgwpkxjzvrqa2l"; depends=[]; }; @@ -3220,7 +3125,7 @@ in with self; { NHSDataDictionaRy = derive2 { name="NHSDataDictionaRy"; version="1.2.5"; sha256="17jvyjxc28bmxadvcjhal4shklh24636zw6hrc7p7m71lbcw86aw"; depends=[dplyr httr magrittr purrr rvest stringr tibble xml2]; }; NHSRdatasets = derive2 { name="NHSRdatasets"; version="0.3.0"; sha256="1l4zrprnb3fsb2mibq8749a15xbvhn1g5yajbjf7gls81c8f2r7p"; depends=[tibble]; }; NHSRplotthedots = derive2 { name="NHSRplotthedots"; version="0.1.0"; sha256="1rqryqaxyb3d6kws8mznsnzv19h8nhn1323vkh9zq59la9r3kiai"; depends=[assertthat crayon dplyr ggplot2 NHSRdatasets rlang scales]; }; - NIMAA = derive2 { name="NIMAA"; version="0.2.0"; sha256="04zg5s8icsq23ryyscqrm8xsz2j9pgrkgy356wijkqkzlnhbdpib"; depends=[bipartite bnstruct crayon dplyr fpc ggplot2 igraph mice missMDA networkD3 plotly purrr RColorBrewer scales skimr softImpute tibble tidyr tidytext visNetwork]; }; + NIMAA = derive2 { name="NIMAA"; version="0.2.1"; sha256="1lnxh9mak25mji38bifrif6qg0rjg3fj0lacjdgpk8iqjallvq7y"; depends=[bipartite bnstruct crayon dplyr fpc ggplot2 igraph mice missMDA networkD3 plotly purrr RColorBrewer scales skimr softImpute tibble tidyr tidytext visNetwork]; }; NIPTeR = derive2 { name="NIPTeR"; version="1.0.2"; sha256="0ll6amqyw33a93xiccihidrnbaqlx1q7kqcd4wks7cvqawd8pgv1"; depends=[Rsamtools S4Vectors sets]; }; NIRStat = derive2 { name="NIRStat"; version="1.1"; sha256="07l4ca7d9q840iy5a80sqafrlv20534jw65wzxs90j2d0jx4acs9"; depends=[ggplot2 gridExtra mgcv]; }; NISTnls = derive2 { name="NISTnls"; version="0.9-13"; sha256="03a1c8a5dr5l5x4wbclnsh3vmx3dy7migfdzdx7d7p3s7hj3ibif"; depends=[]; }; @@ -3236,22 +3141,21 @@ in with self; { NMFN = derive2 { name="NMFN"; version="2.0"; sha256="0n5fxqwyvy4c1lr0glilcz1nmwqdc9krkqgqh3nlyv23djby9np5"; depends=[]; }; NMI = derive2 { name="NMI"; version="2.0"; sha256="1rxphy9rhy9zhdiz48dvl9m26x6k681lnyn39lqxs0a6jhrxg7y3"; depends=[]; }; NMMIPW = derive2 { name="NMMIPW"; version="0.1.0"; sha256="13mv6dpmlldqxkxq6kiydsfwyys5w7i8ws80a5l3377i5chdqi2c"; depends=[lava nloptr numDeriv]; }; - NMOF = derive2 { name="NMOF"; version="2.5-0"; sha256="1ix3jkhivq2xmyn7dc216cp3q2sgd6d1f9n0rds2zil6dp418jgl"; depends=[]; }; + NMOF = derive2 { name="NMOF"; version="2.5-1"; sha256="147kf79b0vpx3xpwp4wd4ki06hijc0dgnkc2h43zkgac6rrbls04"; depends=[]; }; NMVANOVA = derive2 { name="NMVANOVA"; version="1.1.0"; sha256="1jlqyg5vn7j8srvifjghd5a7820kadl8kbwib4qxalrfprq81h8p"; depends=[]; }; NMdata = derive2 { name="NMdata"; version="0.0.11"; sha256="0yzjrx885zq7pnajm3s2nxjcza8pcxbn0ni60bwvr85havcs1wpj"; depends=[data_table]; }; NMproject = derive2 { name="NMproject"; version="0.6.7"; sha256="0sri85n5i5w56bmbcg3yca3r5lh9j59gwwjidwhvxvxbg6czw6n7"; depends=[crayon diffobj dplyr DT dygraphs git2r htmltools lifecycle magrittr miniUI reshape2 rlang rmarkdown rprojroot rstudioapi shiny stringr tidyr usethis]; }; NNMIS = derive2 { name="NNMIS"; version="1.0.1"; sha256="1w2i4xlx249p589yqdgbx1ra406ycxw729vbk1lqadbn71m6blaz"; depends=[survival]; }; - NNS = derive2 { name="NNS"; version="0.8.61"; sha256="195hgfm3xn7bywkslzvkkrx3fc0km0kis4zfwjr5b63z93sxf8lg"; depends=[caret data_table doParallel dtw dynlm meboot Quandl Rfast rgl stringr tdigest tseries zoo]; }; + NNS = derive2 { name="NNS"; version="0.8.70"; sha256="0hd3d7qf5krdb1pf88xnlbbcgwrkgkjnrlcx2lxrb9q4g55z8av0"; depends=[caret data_table doParallel dtw dynlm meboot Quandl Rfast rgl stringr tdigest tseries zoo]; }; NNTbiomarker = derive2 { name="NNTbiomarker"; version="0.29.11"; sha256="0sqlf7vzhpmq2g98c2qlrcqn3ba4ycfxbczgcjiqqhqsvgkpacc1"; depends=[magrittr mvbutils shiny stringr xtable]; }; NNbenchmark = derive2 { name="NNbenchmark"; version="3.2.0"; sha256="086smk3xy6p6ianw41h3gx806q7h28v1dg9d3khsrwyyf9gn8xyp"; depends=[pkgload R6]; }; NO_PING_PONG = derive2 { name="NO.PING.PONG"; version="0.1.4"; sha256="10q5h9kafni3wlnn1gdsgd9a90km5snrjz1nr0ilafmdvw9vg6v1"; depends=[MASS MCMCglmm metafor]; }; NORMA = derive2 { name="NORMA"; version="0.1"; sha256="193q6dwn8v7k8xq0amjpvb3v6mn7c6agqa487gvjj78dy1qz720a"; depends=[rootSolve]; }; - NORMT3 = derive2 { name="NORMT3"; version="1.0-3"; sha256="041s0qwmksy3c7j45n4hhqhq3rv2hncm2fi5srjpwf9fcj5wxypg"; depends=[]; }; NPBayesImputeCat = derive2 { name="NPBayesImputeCat"; version="0.4"; sha256="0g4xamc6vm5xcbvjrz77msglas81pzw6pi8ikfv8j4j03i5xa7mj"; depends=[bayesplot dplyr ggplot2 Rcpp reshape2 rlang]; }; NPC = derive2 { name="NPC"; version="1.1.0"; sha256="06y6vdln5zyinq9bsp66yz6i1v5bkw9pa2hknl9brwc75z359apn"; depends=[coin dplyr matlab permute]; }; NPCD = derive2 { name="NPCD"; version="1.0-11"; sha256="107i33z4q5w2828sm0pm8234kmp1v3a2w72lmhvi0rpnjhg0x120"; depends=[BB R_methodsS3]; }; NPCirc = derive2 { name="NPCirc"; version="3.0.1"; sha256="0hljqfyrb8r76f6lkjn0jgr15wnyqv3pc3bv23bdw0hxq574aiwc"; depends=[circular misc3d movMF plotrix rgl shape]; }; - NPHMC = derive2 { name="NPHMC"; version="2.2"; sha256="000x9y00gfkaj5lf00a55b9qx15x05yp3g3nmp8slyzsnfv66p5d"; depends=[smcure survival]; }; + NPHMC = derive2 { name="NPHMC"; version="2.3"; sha256="0mi92rnpm96nc2ip10022qa7cjrlry9aibw8yx9xmn826bqipwir"; depends=[smcure survival]; }; NPHazardRate = derive2 { name="NPHazardRate"; version="0.1"; sha256="0na4iphva1dadz457ii8kxrhnki2asaxpbwr824rljyrldj9rcgg"; depends=[survival]; }; NPIstats = derive2 { name="NPIstats"; version="0.1.0"; sha256="0hbx2mzz1z2158c943dqfn0pq1aybj1xxy55mmvld4djr5zrlz9w"; depends=[dplyr]; }; NPMLEcmprsk = derive2 { name="NPMLEcmprsk"; version="3.0"; sha256="0nm88fsxgrfk0j0lmir57bhxy4p8ah503gpj6jdlvjqw862jigiq"; depends=[]; }; @@ -3261,10 +3165,9 @@ in with self; { NPS = derive2 { name="NPS"; version="1.1"; sha256="02idja149a2sj97sks4lhsaflpifyxi6n0rjlcq9993f84szfgsi"; depends=[]; }; NPflow = derive2 { name="NPflow"; version="0.13.3"; sha256="1bgdkm82pmzjv46pkxpvh5ffffmc6q68x5jjl7k330w9vwgx2kf0"; depends=[ellipse fastcluster ggplot2 pheatmap Rcpp RcppArmadillo reshape2 truncnorm]; }; NRejections = derive2 { name="NRejections"; version="1.2.0"; sha256="0lzj7kyn4s8l306a6xwkgkv1z4dlfsr61i902lvdxv4ln4m6a5kq"; depends=[doParallel foreach matrixcalc mvtnorm StepwiseTest]; }; - NSAE = derive2 { name="NSAE"; version="0.2.1"; sha256="0pf1l8ms3shjgkgvfqx9vx78xjrdabw7j4j0c8krlixwmdf9xcr0"; depends=[rlist]; }; + NSAE = derive2 { name="NSAE"; version="0.3.0"; sha256="1ph6vy0iysv224vxw2gxagn6pzllywck96s1abf7v7h40b9jf8nj"; depends=[rlist]; }; NSM3 = derive2 { name="NSM3"; version="1.16"; sha256="18wihr8qzdkyd6pwxq8yz2wrj0nh1sh713nflv4jiiczg6d965b8"; depends=[agricolae ash binom BSDA coin combinat fANCOVA gtools Hmisc km_ci MASS metafor nortest np partitions quantreg Rfit SemiPar SuppDists survival waveslim]; }; NSO1212 = derive2 { name="NSO1212"; version="1.4.0"; sha256="1wxp7rp43gl3xgwln8d1s7b7a5zhz4dlshf9dzgb2ippvjxjqbmc"; depends=[httr jsonlite]; }; - NST = derive2 { name="NST"; version="3.0.6"; sha256="02frl4vpdw14gkgx7g0pi7zl342pkmszh48ggsf3b3qchsj5i1iz"; depends=[ape bigmemory iCAMP permute vegan]; }; NSUM = derive2 { name="NSUM"; version="1.0"; sha256="1as4g3v7qlk9wxlpwhg293980jq9gy6qay77bbcrjf481gvkkbp6"; depends=[MASS MCMCpack]; }; NScluster = derive2 { name="NScluster"; version="1.3.5"; sha256="1z078aixk2f6xxnwz7gbdwfgviha3bv8sfvpz7g56v9v3c1g6bgy"; depends=[]; }; NTS = derive2 { name="NTS"; version="1.1.2"; sha256="02gh9yqflwgqws7a14wwb1y7qx0whw4ss1kkfgh9jp6bxc2dclnf"; depends=[dlm MASS MSwM Rdpack tensor]; }; @@ -3272,17 +3175,17 @@ in with self; { NVCSSL = derive2 { name="NVCSSL"; version="1.0"; sha256="00dpi0b0zm5cfkyb2z8wfkw6xcax2kkplm9rzkvfjz7fchlmkx5r"; depends=[grpreg Matrix plyr]; }; NameNeedle = derive2 { name="NameNeedle"; version="1.2.6"; sha256="0cs65hs6fbkxv8pc2m4394c68nqbahjcryjnhhrhg50wam3y03lq"; depends=[]; }; NatureSounds = derive2 { name="NatureSounds"; version="1.0.4"; sha256="1l8c0zn0bbrcdf098pcbr8fvrl614cl6iq820q0sd7sr36n3k1jr"; depends=[knitr tuneR]; }; - NbClust = derive2 { name="NbClust"; version="3.0"; sha256="1vwb48zy6ln1ddpqmfngii1i80n8qmqyxnzdp6gbaq96lakl3w3c"; depends=[]; }; + NbClust = derive2 { name="NbClust"; version="3.0.1"; sha256="0k5hr4zgx4gp1n62xchgz2zvyl35ba2cnczhhvj8rfbg2n4hx6qs"; depends=[]; }; NegBinBetaBinreg = derive2 { name="NegBinBetaBinreg"; version="1.0"; sha256="0ryi9gdf4sis77c0qxm6r86mfkk1nq9djs297y64nr6ng3rv9p9d"; depends=[boot Matrix mvtnorm]; }; NegativeControlOutcomeAdjustment = derive2 { name="NegativeControlOutcomeAdjustment"; version="0.0.4"; sha256="1lx60nl73y6c5785h0a1b59wz04lldrpsydbrwnb9ixbp8ibzp5h"; depends=[]; }; Neighboot = derive2 { name="Neighboot"; version="1.0.0"; sha256="116q82svg8sw1xwnx253nd8vrv5i70rj45v7lf00m778rh9l2rmr"; depends=[dplyr igraph magrittr RDS RDStreeboot]; }; NestedCategBayesImpute = derive2 { name="NestedCategBayesImpute"; version="1.2.1"; sha256="15j54whvhqy26v1iikpk8ys75d7m5b188ggdzrlgzhjg0f9j45fl"; depends=[coda dplyr Rcpp RcppParallel]; }; NetCluster = derive2 { name="NetCluster"; version="0.2"; sha256="0aby8kfniw07jap795cwk69z83p45q5rap73zp1qbmkm3qcb31g4"; depends=[sna]; }; - NetComp = derive2 { name="NetComp"; version="1.6"; sha256="11rxpdihn575diqfvc7yvxhlr2c19fig4v4a5c6jhqyfdsd60fsv"; depends=[gdata]; }; + NetCoupler = derive2 { name="NetCoupler"; version="0.1.0"; sha256="1xycg179anf78kd1xfwzlmfp8igrl7k2bv105w3s2df5pd8gnpbg"; depends=[checkmate dplyr ids igraph lifecycle magrittr pcalg ppcor purrr rlang tibble tidygraph tidyselect]; }; NetDA = derive2 { name="NetDA"; version="0.1.0"; sha256="01wrngk0cdlz3qf1kj2z75p2b4q0lhkpyjgaskn6vldsdgh94wri"; depends=[glasso]; }; NetExplorer = derive2 { name="NetExplorer"; version="0.0.2"; sha256="0k8jhl0p2dp45lx4h77r0bkcff8vn1f9gvr475cshpmyipziiwnq"; depends=[]; }; NetFACS = derive2 { name="NetFACS"; version="0.3.1"; sha256="0z4smbh8dcb0nffyzn0yyndzniw6wh026hvdj18bz5qqv32pcq1b"; depends=[arrangements doParallel dplyr ggplot2 ggraph igraph magrittr patchwork picante Rfast rlang tibble tidygraph tidyr]; }; - NetIndices = derive2 { name="NetIndices"; version="1.4.4"; sha256="0ydivbri8l8zkxi18ghj9h66915scyhca8i9mcyq4b06mjfigss8"; depends=[MASS]; }; + NetIndices = derive2 { name="NetIndices"; version="1.4.4.1"; sha256="0zi3b9i2apfdcm85k7ah6r6ad0v6rji5gysb410vc3bgrixa03lk"; depends=[MASS]; }; NetLogoR = derive2 { name="NetLogoR"; version="0.3.10"; sha256="1ns35pn5h63lg5wzwyvbyyv770vkxhh2b7n85h8rfazgkyv0w3la"; depends=[abind CircStats data_table matrixStats quickPlot raster rgeos sp SpaDES_tools]; }; NetMix = derive2 { name="NetMix"; version="0.2.0"; sha256="097cyk0lf3h4v3ff0icqj7a80yvs06damw1sc4hdqf2f21d6qihh"; depends=[clue gtools igraph lda MASS Matrix poisbinom Rcpp RcppArmadillo]; }; NetOrigin = derive2 { name="NetOrigin"; version="1.1-4"; sha256="061hfllic8z3ps4znk3c7qjhzqdifk99ikvczxacih5hw86a9j4m"; depends=[colorspace corpcor Hmisc igraph mvtnorm plyr]; }; @@ -3297,13 +3200,13 @@ in with self; { NetworkDistance = derive2 { name="NetworkDistance"; version="0.3.4"; sha256="0z3q15aq5jqwbyxr4464nq74ib7644f185h8wfzvfi491xkrl4cr"; depends=[doParallel foreach graphon igraph Matrix network pracma Rcpp RcppArmadillo Rdpack RSpectra]; }; NetworkExtinction = derive2 { name="NetworkExtinction"; version="0.1.1"; sha256="1958kpdcqp4hhkqmfjg2qnrzhwcmfkbgdriq9iyqmmcr7qm8c1y7"; depends=[broom dplyr ggplot2 magrittr network scales sna tidyr]; }; NetworkInference = derive2 { name="NetworkInference"; version="1.2.4"; sha256="1x63szbns8wf3k89ibk2p66prngw4fr2ckfn1568mnxdwnzvhrb4"; depends=[assertthat checkmate ggplot2 ggrepel Rcpp RcppProgress]; }; - NetworkReg = derive2 { name="NetworkReg"; version="1.0"; sha256="0ymbigvl1n5348g77jqs1bcda00kdqrm7zifc0ibh5mwsrx6cmds"; depends=[Matrix randnet RSpectra]; }; NetworkRiskMeasures = derive2 { name="NetworkRiskMeasures"; version="0.1.4"; sha256="1121ma43jxc4p9rw0sc8w32shf9xrmn5qd1xsqgzr8diymc49zhg"; depends=[dplyr expm ggplot2 Matrix]; }; NetworkToolbox = derive2 { name="NetworkToolbox"; version="1.4.2"; sha256="026gizms1xsmlpzgssgqi2y5lfhvvbqkwy5q3a0d4xvzbmyan3y7"; depends=[corrplot doParallel fdrtool foreach igraph IsingFit MASS pbapply ppcor psych pwr qgraph R_matlab]; }; NeuralNetTools = derive2 { name="NeuralNetTools"; version="1.5.3"; sha256="1q3q3vc1f0lglyx5ydv5nx6ywpvz50a9w7cql2j7cjvh4pd3pibs"; depends=[ggplot2 nnet reshape2 scales tidyr]; }; - NeuralSens = derive2 { name="NeuralSens"; version="0.2.3"; sha256="11m2bpkdn2p7fay3p208jsifad470aq4paagyh335nzgsmp47jgb"; depends=[caret fastDummies ggforce ggnewscale ggplot2 gridExtra Hmisc magrittr NeuralNetTools reshape2 scales stringr]; }; + NeuralSens = derive2 { name="NeuralSens"; version="1.0.0"; sha256="1yqwk0xi5ys7cd0g099fvsprv0rd0lha6sfb5cb3nn00bkn4wylk"; depends=[caret fastDummies ggforce ggnewscale ggplot2 gridExtra Hmisc magrittr NeuralNetTools reshape2 scales stringr]; }; Newdistns = derive2 { name="Newdistns"; version="2.1"; sha256="1b5njkzj8b0wrvvfv904di0933k9d320gadmfm5zl6pzdp34bh1i"; depends=[AdequacyModel]; }; - NewmanOmics = derive2 { name="NewmanOmics"; version="1.0.4"; sha256="1ny1w4kwdgfzm4jsj6mf3k0c10bwzwz4gmpb5vg3qffddly9wfaz"; depends=[oompaBase]; }; + NewmanOmics = derive2 { name="NewmanOmics"; version="1.0.9"; sha256="0py1r0csig265zwfapavzq6kggfbwzpy2k0sxxya5slmwyjsnpy6"; depends=[oompaBase]; }; + NiLeDAM = derive2 { name="NiLeDAM"; version="0.2"; sha256="036hbzpfx9awq15fdnbfzmc5f84zq97kpzw0wds0m0ksxj8qhd73"; depends=[dplyr ggplot2 magrittr nleqslv rlang scales shiny shinyjs shinythemes thematic tidyr]; }; NicheBarcoding = derive2 { name="NicheBarcoding"; version="1.0"; sha256="16jkznc4624ww7vwid6f3m90wm2ds2c7zf1j1sw16dyrqmlyk9w3"; depends=[ape dismo e1071 maps pROC randomForest raster rJava spider vegan]; }; NightDay = derive2 { name="NightDay"; version="1.0.1.1"; sha256="1gwwxk428gkvci4dhfb3zikvidalpqkl0q2r6qpm58c12j14jk1h"; depends=[maps]; }; NipponMap = derive2 { name="NipponMap"; version="0.2"; sha256="0jk3zz05vhximbbm15h7ngb0ffxp5w8zhisifipkdgvg1hpi7pb7"; depends=[sf tibble]; }; @@ -3313,7 +3216,6 @@ in with self; { Nmisc = derive2 { name="Nmisc"; version="0.3.7"; sha256="1k43cp63h96xv3f28fpvw7p2yh3lv1jbhq9bdp3yk6cg0870vya7"; depends=[dplyr magrittr purrr rappdirs rlang stringr tibble tidyselect]; }; Nmix = derive2 { name="Nmix"; version="2.0.3"; sha256="072n4mmirzkfyd9mslx9mig5y8av0rzv3qvdrii8a3hyxn8i0wbq"; depends=[]; }; NobBS = derive2 { name="NobBS"; version="0.1.0"; sha256="0i0jyny1c29knpcl4szqwyxvdc3dqjfk5lf2xvwjdx3qas92w03l"; depends=[coda dplyr magrittr rjags]; }; - NoiseFiltersR = derive2 { name="NoiseFiltersR"; version="0.1.0"; sha256="0y90si8f5hsi273g10hw700r72la30hwqlwg59gaq76wqlkm8j0p"; depends=[caret e1071 kknn MASS nnet randomForest rJava rpart RWeka]; }; NominalLogisticBiplot = derive2 { name="NominalLogisticBiplot"; version="0.2"; sha256="0m9442d9i78x57gdwyl3ckwp1m6j27cam774zkb358dw5nmwxbmz"; depends=[gmodels MASS mirt]; }; NonCompart = derive2 { name="NonCompart"; version="0.5.0"; sha256="0chskza5d14pf4drj4i56hpf61md69vqnq4w75zsxy3zrsb23xcy"; depends=[]; }; NonNorMvtDist = derive2 { name="NonNorMvtDist"; version="1.0.2"; sha256="11xqdrx03q3anavyxpzb0hz6mcbdy252rzzjlpa2byfdlrfvn178"; depends=[cubature]; }; @@ -3324,11 +3226,11 @@ in with self; { Nonpareil = derive2 { name="Nonpareil"; version="3.4.0"; sha256="130aags0pgry0d34mj1n4lavc8q43hls7c3jhmkr8k6vyg3ij372"; depends=[]; }; NormExpression = derive2 { name="NormExpression"; version="0.1.0"; sha256="1j4q8mb70ig40acfd9kfy12vxdvq3qpf53rxh47kkw8mywnd0449"; depends=[]; }; NormPsy = derive2 { name="NormPsy"; version="1.0.8"; sha256="13w4xjdjjg9mzmfaflc0gp306kazyvxshpj4vnl6gym3vpi9qax8"; depends=[lcmm]; }; - NormalBetaPrime = derive2 { name="NormalBetaPrime"; version="2.2"; sha256="03il9c57dbwgw38rzckkk0wkc37z8kfdrb7b4k471gm7mqhsm3m3"; depends=[GIGrvg glmnet HyperbolicDist MASS Matrix pracma pscl truncnorm]; }; NormalGamma = derive2 { name="NormalGamma"; version="1.1"; sha256="0r3hhfscif0sx9v8f450yf119gpvf3ilpb8n3ziy4v4qf2jlcfnk"; depends=[histogram optimx]; }; NormalLaplace = derive2 { name="NormalLaplace"; version="0.3-0"; sha256="0njgjdx2yvvy5jb5zn6zr7jdz5hck5bbkicv15z4ai4ibmckqjmh"; depends=[DistributionUtils GeneralizedHyperbolic]; }; NormalityAssessment = derive2 { name="NormalityAssessment"; version="0.0.2"; sha256="0i02mqxgyzm6y02rbk6skqp58hf35cg4wpfa9abx8rsmbg09jpxj"; depends=[dplyr DT ggplot2 rio shiny shinyalert shinyBS stringi stringr]; }; NostalgiR = derive2 { name="NostalgiR"; version="1.0.2"; sha256="0rpvwi815sdhaxqpji1y6g0vy8mkn5k6wci0a4jf54pkywwkwrwp"; depends=[txtplot]; }; + NovelDistns = derive2 { name="NovelDistns"; version="0.1.0"; sha256="073969vk2vg58fx5h0v92m3zb1rdzlvv809vyahy3gxrj9n13lmh"; depends=[AdequacyModel gsl rootSolve]; }; Nozzle_R1 = derive2 { name="Nozzle.R1"; version="1.1-1"; sha256="05sjip4sz12mwd3jcbvk342p83kdmrd4l2jrh17p18w4l7w4nn0z"; depends=[]; }; Numero = derive2 { name="Numero"; version="1.9.0"; sha256="0knfp10f8apq2bbp4pbkqwhzwhlvcxnbihdy4gn7parfm07q5wws"; depends=[Rcpp]; }; NutrienTrackeR = derive2 { name="NutrienTrackeR"; version="1.2.0"; sha256="0n54kgxcj8w3r3iqdr13kia49b9zgxiki64h90yygpbg32hqdn8b"; depends=[ggplot2 shiny]; }; @@ -3345,7 +3247,6 @@ in with self; { ODEsensitivity = derive2 { name="ODEsensitivity"; version="1.1.2"; sha256="0yddv5h3y0xfviqjgrbixawd00jc1rh9ngckfqka5j855vhchh66"; depends=[checkmate deSolve ODEnetwork sensitivity]; }; ODMeans = derive2 { name="ODMeans"; version="0.1.0"; sha256="1f8difw0npidsnn9sis8pf73i8p4p5cl63g4v02jaxmlmm184wvf"; depends=[geosphere ggplot2]; }; ODS = derive2 { name="ODS"; version="0.2.0"; sha256="0i7giibass7hadvv6mb7k9xrykgfss57jmm6gpbym8qcywhzq4ny"; depends=[cubature survival]; }; - OData = derive2 { name="OData"; version="0.6"; sha256="10r4kfhdabramjmkgc4fl0bljaiqbvc7rq4byas7q8cmji2czw6f"; depends=[RJSONIO XML]; }; ODataQuery = derive2 { name="ODataQuery"; version="0.5.3"; sha256="058j3rc5kh134ndsxn5gck2xh6llrs73cyxpa5z8zkmsw9am22qj"; depends=[httr jsonlite R6 rlang]; }; OECD = derive2 { name="OECD"; version="0.2.5"; sha256="13f185xvjlhxbg94vmnzvyddidxsbkvffjabp7jkg1zjl4x680s1"; depends=[httr readsdmx xml2]; }; OEFPIL = derive2 { name="OEFPIL"; version="0.1.1"; sha256="0gnbbz2spaqlqqn7978l15jv7xiqpfrh8k9girrpdqih02x95rfw"; depends=[Deriv ggplot2 MASS matrixcalc minpack_lm plyr]; }; @@ -3358,16 +3259,14 @@ in with self; { OOI = derive2 { name="OOI"; version="0.1.0"; sha256="0ivxgq539v68kak3zzakywppba0grzh7qn1h404s4ag30cxv0g8p"; depends=[modi]; }; OOR = derive2 { name="OOR"; version="0.1.3"; sha256="13v04rx2q6pbiq7dyd29wvimkr4sbq2f5rnn3a0lcbwr3x35r7h9"; depends=[]; }; OOS = derive2 { name="OOS"; version="1.0.0"; sha256="0jnj5y26rv0i2561mywcxb7aavmpq16ippq6rblb8jiqjd05nhib"; depends=[caret dplyr forecast furrr future ggplot2 glmnet imputeTS lmtest lubridate magrittr purrr sandwich tidyr vars xts zoo]; }; - OOmisc = derive2 { name="OOmisc"; version="1.2"; sha256="09vaxn5czsgn6wpr27lka40kzd76jzqgqxavf26ms3m9kkdf83g4"; depends=[]; }; OPC = derive2 { name="OPC"; version="0.0.1"; sha256="0m7yqk3drj0zz4184bsvzhqzjxl0smfqdkkr7rpg8z3jk8qkvah1"; depends=[MASS]; }; OPDOE = derive2 { name="OPDOE"; version="1.0-10"; sha256="04z944i4f3i0cjnxh32wf7n2dfyynnvkz4lxdkn90flam2np58yv"; depends=[crossdes gmp mvtnorm nlme orthopolynom polynom]; }; OPI = derive2 { name="OPI"; version="2.10.1"; sha256="0yzl3s0bkygwh1mg2fshf370k7hr0iw091k1jpwf92fvym1a68ia"; depends=[]; }; - ORCI = derive2 { name="ORCI"; version="1.1"; sha256="0xy5lvz2scz06fphjyhqbdhp4bizmv87a8xykp9dbgx8b4ssnqgz"; depends=[BiasedUrn BlakerCI PropCIs]; }; ORCME = derive2 { name="ORCME"; version="2.0.2"; sha256="1pm8ajj24qqj2fir0gjzq5f4mfpl1cnj6fm2z5qg6g3sbnm57ayk"; depends=[Iso]; }; ORDER2PARENT = derive2 { name="ORDER2PARENT"; version="1.0"; sha256="04c80vk6z227w6qsnfls89ig4vqyiiymdarhq1pxa0gpr8j2ssx5"; depends=[Matrix]; }; ORIClust = derive2 { name="ORIClust"; version="1.0-1"; sha256="1biddddyls2zsg71w4innxl0ckfb80q2j9pmd56wvbc0qnbm0w3q"; depends=[]; }; ORION = derive2 { name="ORION"; version="1.0.3"; sha256="0zzlvx1yd3hy8dy7nbmkj7d2k6609ys91s894qcgx5n7jirqviy3"; depends=[doParallel e1071 foreach igraph knitr randomForest rmarkdown TunePareto]; }; - ORKM = derive2 { name="ORKM"; version="0.0.0.3"; sha256="12pgiwnay2fgi6wdx4a4m1x2kaqw9jgdy2lnvh4r9x4rldz1skjb"; depends=[MASS Matrix]; }; + ORKM = derive2 { name="ORKM"; version="0.0.2.1"; sha256="11rymlyzfv7h8lk70z2znanbflcd0advivyqc1d2wfy0v09yda9l"; depends=[MASS Matrix]; }; ORMDR = derive2 { name="ORMDR"; version="1.3-2"; sha256="0y7b2aja3zvsd6lm7jal9pabcfxv16r2wh0kyzjkdfanvvgk3wmm"; depends=[]; }; ORTSC = derive2 { name="ORTSC"; version="1.0.0"; sha256="0byja1gi44ymn68cfai8apcimlxmnflqr1pj8k4y7l8lqd3fyz60"; depends=[googleAuthR googleCloudVisionR]; }; ORdensity = derive2 { name="ORdensity"; version="1.0"; sha256="1g9d85dyfhlqmwsigdn64hifasbvw70g3wpph2h9v2ksvia0cd31"; depends=[cluster distances doParallel doRNG foreach plyr Rfast]; }; @@ -3385,12 +3284,10 @@ in with self; { OWEA = derive2 { name="OWEA"; version="0.1.1"; sha256="00mx94v3krivsxha6sh13xhn2bdj77g8858vc4r2cy23ab4bg0g7"; depends=[gtools MASS shiny]; }; Oarray = derive2 { name="Oarray"; version="1.4-9"; sha256="04jng89s19rd8lbjm76wm4p4ggkffwnsa5qa60c4lwn2rj89a8a1"; depends=[]; }; OasisR = derive2 { name="OasisR"; version="3.0.2"; sha256="1388ld2nws3ppnkavg8s59q3inqf365c5cf9qvzbj6icmwqs9rdd"; depends=[measurements outliers rgdal rgeos seg spdep]; }; - Observation = derive2 { name="Observation"; version="0.2.0"; sha256="0v81manzcvv8x9hbf75c8klslzdabha53rasyba91vvcbrshhq6j"; depends=[AGread svDialogs]; }; OceanView = derive2 { name="OceanView"; version="1.0.6"; sha256="1ww6xhpvs3y0zx7pgj8083a8v4l4cm0b0b497b4gsjbcbnbnal9c"; depends=[plot3D plot3Drgl rgl shape]; }; OddsPlotty = derive2 { name="OddsPlotty"; version="1.0.2"; sha256="0adgbrni7yrarybh0djmq68hifwqzn2rn9mfqgwqma1d7mg3ai93"; depends=[caret e1071 ggplot2 ggthemes magrittr mlbench rmarkdown tibble tidymodels]; }; OenoKPM = derive2 { name="OenoKPM"; version="0.1.2"; sha256="1rw740zw38k3q9kl89rvn740d5v4k1hhmlz4bp9ynhnq34g9p9rq"; depends=[extrafont ggplot2 ggtext minpack_lm openxlsx]; }; Ohit = derive2 { name="Ohit"; version="1.0.0"; sha256="132d4drc2phw9ppxnczb1ycdg3dv085k8p6bcaj3v866j0hfxjgb"; depends=[]; }; - OjaNP = derive2 { name="OjaNP"; version="1.0-0"; sha256="0xddspnnwlcxh2i66ilh6i920k53y7fv6m1hgj9h28qg2wy0vyah"; depends=[ICS ICSNP Rcpp]; }; OkNNE = derive2 { name="OkNNE"; version="1.0.0"; sha256="0ggx508cqkqc51qw10cajm8r3k5h474n7y8dgck2fr4db047zmcm"; depends=[FNN]; }; OlinkAnalyze = derive2 { name="OlinkAnalyze"; version="3.0.0"; sha256="1kgfv8v9q2kx8cn1rvizvlybv7qd5qc6n27cxackv97w8jx73s59"; depends=[broom car dplyr emmeans forcats generics ggplot2 ggpubr ggrepel lme4 lmerTest magrittr readxl rlang stringr tibble tidyr tidyselect]; }; OmegaG = derive2 { name="OmegaG"; version="1.0.1"; sha256="1aihcrgml67rvnx9vpnq2nnbc79kicw4ks1fradsa36ykkdz6b1g"; depends=[]; }; @@ -3400,10 +3297,10 @@ in with self; { OmicsPLS = derive2 { name="OmicsPLS"; version="2.0.2"; sha256="08vx4925j5ln366h7nzhf1ra5ciplrqw911258chi9di7gpm8g50"; depends=[dplyr ggplot2 magrittr softImpute tibble]; }; OmnibusFisher = derive2 { name="OmnibusFisher"; version="1.0"; sha256="0x3q04g45nixgsrl4biqqi6bk4kx79spq5whm3n4ppr0nkv8dw4h"; depends=[CompQuadForm stringr survey]; }; OnAge = derive2 { name="OnAge"; version="1.0.1"; sha256="1zby5sf92c185b5m19jv4ndgbv6mz107nc47zn1d6bijrypzpc20"; depends=[]; }; - OncoBayes2 = derive2 { name="OncoBayes2"; version="0.8-5"; sha256="09im0d01cknxc9kwzpl6xr34fhbj3yqgjgjpfczwmxf4gdhvxvx2"; depends=[abind assertthat bayesplot BH checkmate dplyr Formula ggplot2 Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tibble tidyr tidyselect]; }; - Oncotree = derive2 { name="Oncotree"; version="0.3.3"; sha256="147rc9ci66lxbb91ys2ig40sgmldi15p604yysrd4ccbxpbk2zwf"; depends=[boot]; }; + OncoBayes2 = derive2 { name="OncoBayes2"; version="0.8-6"; sha256="13j6rx0ggflf26hfkyq2wh0yaazm54ib6ygl6k8p4jcrfm7b1yjj"; depends=[abind assertthat bayesplot BH checkmate dplyr Formula ggplot2 Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tibble tidyr tidyselect]; }; + Oncotree = derive2 { name="Oncotree"; version="0.3.4"; sha256="11pn50zshv1rl2mvars5iwzqfzlm9i8rd1rlz3pn1nn94051d8ab"; depends=[boot]; }; OneR = derive2 { name="OneR"; version="2.2"; sha256="1k7rzhcwq5b2yi4zfsc1r0yb6w65gxj9835d2a1dclallja3zav2"; depends=[]; }; - OneSampleMR = derive2 { name="OneSampleMR"; version="0.1.0"; sha256="0gxsfx5www0ndmxaymva2krsyricf4b6nyvjz1hlyjckl3drmqbw"; depends=[Formula gmm ivreg lmtest msm]; }; + OneSampleMR = derive2 { name="OneSampleMR"; version="0.1.2"; sha256="1g2ia06450xy6mbkn13r9wzap1jxz1iw36jiy3699zm9azndd002"; depends=[Formula gmm ivreg lmtest msm]; }; OneStep = derive2 { name="OneStep"; version="0.9.2"; sha256="06gnw364p74nnb9rx3ghyfavd02xmnvzy94hzdwgxqs86z30b2gz"; depends=[fitdistrplus numDeriv]; }; OneTwoSamples = derive2 { name="OneTwoSamples"; version="1.0-3"; sha256="0019rc2f4jmbm6sinkvalvjqwi822x78aiin88kg8qbbb5ml8l89"; depends=[]; }; OpVaR = derive2 { name="OpVaR"; version="1.2"; sha256="1923p60yzh8fycwl1fwy01r7ml5yx0kx01ckhgii7slm4cachf5f"; depends=[actuar evmix MASS pracma ReIns tea truncnorm VineCopula]; }; @@ -3423,7 +3320,6 @@ in with self; { OptGS = derive2 { name="OptGS"; version="1.1.1"; sha256="1acwwjng5ri5vganv7b5pagp7524ifr0q8h1pbfb5g6z3x6w08kh"; depends=[]; }; OptHedging = derive2 { name="OptHedging"; version="1.0"; sha256="0g7qaf5abvbcqv2h1dciwn3gwpz084ryqjjk0yabdm4ym0y38ddm"; depends=[]; }; OptHoldoutSize = derive2 { name="OptHoldoutSize"; version="0.1.0.0"; sha256="0ab0vvbg1nmpbbhq5a5nkwv7ap0fq4542l5da7g8qlwc23h6sfs5"; depends=[matrixStats mle_tools mnormt mvtnorm ranger]; }; - OptInterim = derive2 { name="OptInterim"; version="3.0.1"; sha256="1ks24yv5jjhlvscwjppad27iass59da1mls99hlif0li9mvkbvyk"; depends=[clinfun mvtnorm]; }; OptM = derive2 { name="OptM"; version="0.1.6"; sha256="1x3df5qmbs920rgxpc32grwran49nxpnw9swrba9877c0ixg2dww"; depends=[boot SiZer]; }; OptSig = derive2 { name="OptSig"; version="2.1"; sha256="1k43qsjdc00plgsindjkfn6v098v0zfy7sjkh4n4ybib2qx3v8fn"; depends=[pwr]; }; OptimaRegion = derive2 { name="OptimaRegion"; version="1.1"; sha256="1bikc12a5v3q7f26r14pdfmnxpyqzxa94a10mx5g954km3a329ly"; depends=[boot DepthProc fields geometry magrittr mclust nloptr Rdpack Rdsdp rsm spam stringr]; }; @@ -3431,7 +3327,7 @@ in with self; { OptimalDesign = derive2 { name="OptimalDesign"; version="1.0.1"; sha256="02vxxb25q7fl73y7zq0a89ra0s88wji4mrql7p88014p073lj2as"; depends=[lpSolve Matrix matrixcalc matrixStats plyr quadprog rgl]; }; OptimalRerandExpDesigns = derive2 { name="OptimalRerandExpDesigns"; version="1.1"; sha256="033qwzglpzjk302dr19yak34j2k19k6vihd3vlj9c8xsiikmrfmj"; depends=[ggplot2 GreedyExperimentalDesign momentchi2]; }; OptimalTiming = derive2 { name="OptimalTiming"; version="0.1.0"; sha256="1mchb7wdk1v56la30ivi40aq6zma64lrdb94d64d0s7x67m8315w"; depends=[mstate survival]; }; - OptionPricing = derive2 { name="OptionPricing"; version="0.1"; sha256="0j98h3fn29xfv7xyp7av459v56chw99pnvmsbqvrv4g77p60f5q2"; depends=[]; }; + OptionPricing = derive2 { name="OptionPricing"; version="0.1.1"; sha256="1x90v95mm1cylq0gnswniaf9imrjd7diid9hcv0vmffz4xa9ixks"; depends=[]; }; Orcs = derive2 { name="Orcs"; version="1.2.1"; sha256="0n693m8z0j4irk9zj6d1gpbn2vhfbfpf7z6iyx19iim3g242823q"; depends=[bookdown knitr lattice latticeExtra plotrix raster Rcpp remotes rgdal sf sp]; }; OrdFacReg = derive2 { name="OrdFacReg"; version="1.0.6"; sha256="16mavsmp6d8rfmimmp5ynwyzir0gycpg8rhd8cwanlrndyclqlpv"; depends=[eha MASS survival]; }; OrdMonReg = derive2 { name="OrdMonReg"; version="1.0.3"; sha256="1xca8pvvq79j484l2rmn4nva8ncx8z51g5diljikck231y8qjqaz"; depends=[]; }; @@ -3450,11 +3346,11 @@ in with self; { PACLasso = derive2 { name="PACLasso"; version="1.0.0"; sha256="1qzzymhfsjy8mk0r0xpd5h4wrx4wk8gq3vi6fnawkq5xkrg26rld"; depends=[lars limSolve MASS penalized quadprog]; }; PACVr = derive2 { name="PACVr"; version="0.9.4"; sha256="0sj5ibqaw452lncxxbm6xkgmmh9ny6hx4b9hppzwglpgk6vvb5f3"; depends=[BiocGenerics Biostrings genbankr GenomicAlignments GenomicRanges IRanges optparse RCircos]; }; PAFit = derive2 { name="PAFit"; version="1.2.5"; sha256="07n27g2yy2lskna7qa4j6am3prdcwfnx98ppvcarsxgzvywz0scv"; depends=[ggplot2 igraph knitr magicaxis mapproj MASS network networkDynamic plyr RColorBrewer Rcpp VGAM]; }; - PAGI = derive2 { name="PAGI"; version="1.0"; sha256="01j1dz5ihqslpwp9yidmhw86l112l7rfkswmf03vss872mpvyp3f"; depends=[igraph]; }; PAGWAS = derive2 { name="PAGWAS"; version="2.0"; sha256="0bz47ivd32kx1amgqllqbxyyvj773q7wasgk924hmibabiixa8nx"; depends=[foreach lars mnormt]; }; + PALMO = derive2 { name="PALMO"; version="0.1.0"; sha256="17cxbasdqwy15glf81mp950dbvc577nlf66rsqd7az4x37ylnwld"; depends=[circlize ComplexHeatmap cowplot dplyr factoextra ggforce ggplot2 ggrepel knitr lme4 MAST pbapply pheatmap reshape2 Rtsne Seurat tidyverse]; }; PAMA = derive2 { name="PAMA"; version="1.2.0"; sha256="12fvkcdkn66gzr193fq9byf64qlq2x9dkjv9hpfw770l4yw496jn"; depends=[ExtMallows mc2d PerMallows rankdist Rcpp]; }; PAMhm = derive2 { name="PAMhm"; version="0.1.2"; sha256="0k0n3ni0ypcizri39v76x1vv7hlxlmbpfi7w81yxy9inz7zz4zfw"; depends=[cluster heatmapFlex plyr R_utils RColorBrewer readmoRe readxl robustHD]; }; - PAMmisc = derive2 { name="PAMmisc"; version="1.8.3"; sha256="0k1zg992ygg9c75lf5nmnrvq2fbl2j5hgcyhzxyjdm0hmznv6r6m"; depends=[dplyr geosphere ggplot2 hoardr httr lubridate magrittr ncdf4 PamBinaries purrr RcppRoll rerddap RSQLite seewave stringr tuneR viridis viridisLite xml2]; }; + PAMmisc = derive2 { name="PAMmisc"; version="1.9.2"; sha256="1w4qgz5lxwmr1zh9nqj99r5ic5ibrpdawqf94hgx5g84q5kg2b46"; depends=[dplyr geosphere ggplot2 hoardr httr lubridate magrittr ncdf4 PamBinaries purrr RcppRoll rerddap RSQLite seewave stringr tuneR viridis viridisLite xml2]; }; PAMpal = derive2 { name="PAMpal"; version="0.16.0"; sha256="0chpsqwrimn6v5i24r77dr4ib9kgi71ppmjzjyhck1ygv702g260"; depends=[data_table dplyr gam ggplot2 knitr lubridate manipulate PamBinaries PAMmisc purrr reticulate rlang RSQLite rstudioapi seewave signal stringr tidyr tuneR xml2]; }; PAS = derive2 { name="PAS"; version="1.2.5"; sha256="175p3bnpnhknfsc29hri0l2ipz1x6qcxs2bq7awns8lccam466r2"; depends=[glmnet]; }; PASSED = derive2 { name="PASSED"; version="1.2-1"; sha256="1qzxc2xwqw1vc4ld8iask1aijmsl0jhw17rgph08hwl8cqmnm4nd"; depends=[betareg rootSolve]; }; @@ -3486,9 +3382,9 @@ in with self; { PCLassoReg = derive2 { name="PCLassoReg"; version="1.0.0"; sha256="1m79aiij4dglfz5qhm5h76hxpgszrpzfw37nvx2y6gcq6dya8krl"; depends=[grpreg survival]; }; PCMBase = derive2 { name="PCMBase"; version="1.2.12"; sha256="0p18g660yax8mmnhq1pd4nax4saf8syqj7c1xpspjbfkr78kh15q"; depends=[ape data_table expm ggplot2 mvtnorm xtable]; }; PCMBaseCpp = derive2 { name="PCMBaseCpp"; version="0.1.9"; sha256="0k40mxs8w1vk7qwpkv8gnq6cq3kpj7wvf0i6f1qn1wmm2vvz1kfy"; depends=[abind data_table PCMBase Rcpp RcppArmadillo]; }; - PCMRS = derive2 { name="PCMRS"; version="0.1-3"; sha256="02dkszfaqkwksyf0wics4lldyqlwviw2mpc8kb04nhxnwh50vy1g"; depends=[cubature ltm mvtnorm Rcpp RcppArmadillo statmod]; }; + PCMRS = derive2 { name="PCMRS"; version="0.1-4"; sha256="0bf85zv3nl13gsdi96cd2qg7mfppsccs0ci7l204hws8nmbvri83"; depends=[cubature ltm mvtnorm Rcpp RcppArmadillo statmod]; }; PCPS = derive2 { name="PCPS"; version="1.0.7"; sha256="0gxymz0yws1q1bxkpxi0lmbv57xx62h3dl7z3i2cnbagswkax3zh"; depends=[ape nlme phylobase picante RcppArmadillo SYNCSA vegan]; }; - PCRedux = derive2 { name="PCRedux"; version="1.1"; sha256="0714q5afki3i8vja3qakzjx7r082m99zhsimzlsqjhq4fa3jb8q2"; depends=[bcp changepoint chipPCR ecp fda_usc MBmca pbapply pracma qpcR robustbase segmented shiny zoo]; }; + PCRedux = derive2 { name="PCRedux"; version="1.1-2"; sha256="1x3a4pdv54ppar9fjshk0avgpxvqsar4x7fgy9w0i76fgndr7qs5"; depends=[bcp changepoint chipPCR ecp fda_usc MBmca pbapply pracma qpcR robustbase segmented shiny zoo]; }; PCS = derive2 { name="PCS"; version="1.2"; sha256="0488h6s1yz6fwiqf88z2vgckn6i0kwls8cazmpw3wspnaqvl2n4s"; depends=[multtest statmod]; }; PCSinR = derive2 { name="PCSinR"; version="0.1.0"; sha256="1z8yjryw3c43vc6fxcwiindmyq6r63pc1zr3aybwmys6mv697bb4"; depends=[]; }; PCovR = derive2 { name="PCovR"; version="2.7.1"; sha256="1lvj3kf4pnvbr7lk3kzvh72akga49zx25b3w7nq24925s129sqx1"; depends=[GPArotation MASS Matrix ThreeWay]; }; @@ -3500,7 +3396,7 @@ in with self; { PDQutils = derive2 { name="PDQutils"; version="0.1.6"; sha256="0mmfi0ifwbkjm0274sddpwkj27cvdkwngnka8vdmfm4b2nn7vgsp"; depends=[moments orthopolynom]; }; PDSCE = derive2 { name="PDSCE"; version="1.2"; sha256="17lc6d8ly6jbvjijpzg45dvqrzrh5s1sp415nycazgpbg9ypwr2h"; depends=[]; }; PDShiny = derive2 { name="PDShiny"; version="0.1.0"; sha256="0s09sywvy83dj06rkxzyi06wfymwnfpgf3lpgjbb8ps8q3byd4vs"; depends=[shiny]; }; - PDtoolkit = derive2 { name="PDtoolkit"; version="0.2.0"; sha256="1glfwq8yw4m4iwipnbc95lp4gbkg0xp28f5cz6gixg4ik3a789px"; depends=[dplyr monobin rpart]; }; + PDtoolkit = derive2 { name="PDtoolkit"; version="0.3.0"; sha256="1zmlm6dcgj1iv2jawkrf21r0a0m8cgk0y0injqxdjp2c2ljd4gny"; depends=[dplyr monobin rpart]; }; PEACH = derive2 { name="PEACH"; version="0.1.1"; sha256="0ciq2cci35rv39pgpp7i30jxlmr85726kh07ww22ryq3bm04ylg8"; depends=[MASS metap mnormt]; }; PEGroupTesting = derive2 { name="PEGroupTesting"; version="1.0"; sha256="1z863ard0cc2g8ibxnmxhiqhvs53r6b8gpnavnfchm9432ifcbwi"; depends=[]; }; PEIP = derive2 { name="PEIP"; version="2.2-3"; sha256="1ljalgffgrn9l3q914jjxrn1j740jqk4j8q1vzn3si4np9mz92vp"; depends=[bvls fields geigen Matrix pracma RSEIS]; }; @@ -3514,7 +3410,7 @@ in with self; { PH1XBAR = derive2 { name="PH1XBAR"; version="0.10.1"; sha256="0b9g2mz0vcaqmbpm0cisr6c9l2bk5y3bn0s9096dl5fq9hyma7na"; depends=[forecast mvtnorm pracma]; }; PHENIX = derive2 { name="PHENIX"; version="1.3.1"; sha256="1gd9ycrwawi81al4f5v559km1112giwqnwvvk8ynj4kdb5bqpyq4"; depends=[ppcor SuppDists]; }; PHEindicatormethods = derive2 { name="PHEindicatormethods"; version="1.3.2"; sha256="193fc3l1zbbrnr4jl07bxv8jssyhpgh9aydi6f4w8mh56x9nazhk"; depends=[broom dplyr purrr rlang tibble tidyr]; }; - PHInfiniteEstimates = derive2 { name="PHInfiniteEstimates"; version="2.1"; sha256="1q10ccdc1jhnddfrh5017cx05kdpfpq1z5jvhnidxaz50sccymmf"; depends=[coxphf lpSolve mlogit Rdpack survival]; }; + PHInfiniteEstimates = derive2 { name="PHInfiniteEstimates"; version="2.2"; sha256="0aaibf4y0fjygsq1qbpvcr8p89gsjjl5whnq17qwi4b8mr17mh39"; depends=[coxphf lpSolve mlogit Rdpack survival]; }; PHSMM = derive2 { name="PHSMM"; version="1.0"; sha256="1phfdzhfdhyry11plfd8a2lcn3rg02m84brw7fp2lg3hsxjg5ch7"; depends=[Rcpp RcppArmadillo]; }; PHYLOGR = derive2 { name="PHYLOGR"; version="1.0.11"; sha256="1fq2ny093b4881nwgj6wr8qd5g4dcxb51sdx40ndyxxpq6jj16n9"; depends=[]; }; PHclust = derive2 { name="PHclust"; version="0.1.0"; sha256="18jby44hnk132l0wviqb0wi6nxkg1xisqjh8cxpss2rhwah3l4h1"; depends=[]; }; @@ -3531,19 +3427,19 @@ in with self; { PKPDsim = derive2 { name="PKPDsim"; version="1.1.1"; sha256="0h9rxwjh2cxn3mlpgwy86lrq6y820rhxjyxhjyi4l0k7j6cshlbd"; depends=[BH data_table jsonlite magrittr MASS randtoolbox Rcpp stringr]; }; PKconverter = derive2 { name="PKconverter"; version="1.5"; sha256="1zk2sjrjhq7n2k2p29r2qc6qdghr3riyjvvawz0g74lidg7hm1ly"; depends=[shiny shinydashboard shinythemes]; }; PKreport = derive2 { name="PKreport"; version="1.5"; sha256="16hss9migbxpnw5f9gcw1nlvb81iyji00ylx5wd6kdwhz0ids9wj"; depends=[ggplot2 lattice]; }; - PL94171 = derive2 { name="PL94171"; version="1.0.1"; sha256="0x7lymy8fg5r3w21an6ihrnrhsicnl4q382gx7pij9vlb82cy763"; depends=[dplyr httr readr sf stringr tigris withr]; }; + PL94171 = derive2 { name="PL94171"; version="1.0.2"; sha256="0c03xy5zfy03k3c5jrq3qd8q6gfh8hqajjq3ggfl96grp250bgiw"; depends=[dplyr httr readr sf stringr tigris withr]; }; PLFD = derive2 { name="PLFD"; version="0.1.1"; sha256="0zzvrhjv7jxil326sqp0xmna0lc708wx1wv33qf0jf1ggr4hhqqm"; depends=[mathjaxr Rcpp RcppArmadillo]; }; - PLIS = derive2 { name="PLIS"; version="1.1"; sha256="0b81s7677wglqvv1b5lx8k2iaks09kz0wrl07245a7j2pk9nxv7p"; depends=[]; }; PLMIX = derive2 { name="PLMIX"; version="2.1.1"; sha256="05mnzsi7y71cvg50qx8hp4m31gqslldl34k41r1f8npyb6ldpdca"; depends=[abind coda foreach ggmcmc ggplot2 gridExtra gtools label_switching MCMCpack PlackettLuce pmr prefmod radarchart rankdist rcdd Rcpp reshape2 StatRank]; }; PLNmodels = derive2 { name="PLNmodels"; version="0.11.6"; sha256="1vmcwh81cfkifbirqk2zs8pxn9ng1934q6cw478px9gaqgxfsyaa"; depends=[corrplot dplyr future future_apply ggplot2 glassoFast gridExtra igraph magrittr MASS Matrix nloptr purrr R6 Rcpp RcppArmadillo rlang tidyr]; }; PLORN = derive2 { name="PLORN"; version="0.1.1"; sha256="0x6rvg63mqc451rw0hpz1pjafdyxwraqhnj8cgbwjknhm5k4m1bl"; depends=[ggplot2 kernlab]; }; PLRModels = derive2 { name="PLRModels"; version="1.1"; sha256="0dwnzfw7a1cxz9s00kxf19jmjsc8cy6cc9q2mjqf8z7690wrg7hb"; depends=[]; }; - PLSiMCpp = derive2 { name="PLSiMCpp"; version="1.0.1"; sha256="0dxfv2l2bbg0wfybk6w8p0m5skc9kx7i3ch72j9cvzvza0zqp2ln"; depends=[crayon Rcpp RcppArmadillo]; }; + PLSiMCpp = derive2 { name="PLSiMCpp"; version="1.0.2"; sha256="1gd8p4l6dkiqrjc20zprwm66fhb9259cxr0kqlkh4knv69hask9a"; depends=[crayon purrr Rcpp RcppArmadillo]; }; PLmixed = derive2 { name="PLmixed"; version="0.1.5"; sha256="03ivginsg1zhdxv5bzzmh6mxjz2b6qi8p4cq7sfm5q4llkld46x6"; depends=[lme4 Matrix numDeriv optimx]; }; PLordprob = derive2 { name="PLordprob"; version="1.1"; sha256="1g23h3121g9csr85falm6vgzbva42wz3skhfr2rxmvlc3ca4afyp"; depends=[mnormt]; }; PLreg = derive2 { name="PLreg"; version="0.2.0"; sha256="1639wclggbhq7pm0l350sk6fg6rinfidw4imdg4839wzifh16bjz"; depends=[BBmisc EnvStats Formula gamlss_dist GeneralizedHyperbolic nleqslv VGAM zipfR]; }; PMA = derive2 { name="PMA"; version="1.2.1"; sha256="1rhiylm3jfarnqdkv7nwg536sgsa30ic80dk9byks9w0wf4mn59s"; depends=[]; }; - PMAPscore = derive2 { name="PMAPscore"; version="0.1.0"; sha256="1zs1pybq693ffxyasv6vrhmxx6bqfasr61fv6p1v110492z6g8zr"; depends=[clusterProfiler glmnet maftools org_Hs_eg_db pROC survival survminer]; }; + PMA2 = derive2 { name="PMA2"; version="2.1"; sha256="03v56kcdp4c70r1j6vfx515h27fggzk2f7jr9bq4y3wk0f4272pr"; depends=[]; }; + PMAPscore = derive2 { name="PMAPscore"; version="0.1.1"; sha256="174ll5gr2csy4r5iz92zq6jqq7yfcpiyyigzklgmzpah5v0k5854"; depends=[clusterProfiler glmnet maftools org_Hs_eg_db pROC survival survminer]; }; PMCMR = derive2 { name="PMCMR"; version="4.4"; sha256="05n13pp5yff6pzk4ry07crddfaj3jlglrd1vkcnacyd8jpaxkd77"; depends=[]; }; PMCMRplus = derive2 { name="PMCMRplus"; version="1.9.4"; sha256="16m1pdrzjq9vnx5v7zv56mz9r1205rkw92883cxaqbvdpds6dhqy"; depends=[BWStest gmp kSamples MASS multcompView mvtnorm Rmpfr SuppDists]; }; PMwR = derive2 { name="PMwR"; version="0.17-0"; sha256="0p5gsagpk5w8nmpg49y74bj0gzk1qdpw1q9679p9qpwmc7xl3k6n"; depends=[datetimeutils fastmatch NMOF orgutils textutils zoo]; }; @@ -3559,7 +3455,7 @@ in with self; { POMaSPU = derive2 { name="POMaSPU"; version="1.0.0"; sha256="0jz3jgzdykv0xvfw3ix0hbs32as6dp7p5v8bj5nddknx10d0siya"; depends=[MASS matrixStats Rcpp RcppArmadillo]; }; POSTm = derive2 { name="POSTm"; version="1.1"; sha256="0ax0ky2xbaymw4fdipxvy1gh5wfnnm8hwxcg6hksasaz366widhm"; depends=[ape CompQuadForm]; }; POSetR = derive2 { name="POSetR"; version="1.0.4"; sha256="1fxs741rb4x9b92c1x5i1ngxwaa0r5j2x1x5i4k3y71x67pklmf8"; depends=[igraph Rcpp Rdpack]; }; - POT = derive2 { name="POT"; version="1.1-8"; sha256="1j117ld9qww6miz3g8mqhdmznar9ki23pgdz8rzm4mnbkw4vsdpy"; depends=[]; }; + POT = derive2 { name="POT"; version="1.1-10"; sha256="1gd76xc4gs7v3gcqaidnchm60gd2w7x0p6sqrvy38sfr4wbazz1s"; depends=[]; }; POUMM = derive2 { name="POUMM"; version="2.1.7"; sha256="0pwa97sffb571nfqnbc35dj9lr8z07wjsjnwibj9dhj2dr5b2cfp"; depends=[adaptMCMC ape coda data_table foreach ggplot2 lamW Rcpp]; }; POV = derive2 { name="POV"; version="0.1.4"; sha256="0mqhi410rwpgr6x5h57wqg0f5k01vva0c280zlfpmf8php121x7j"; depends=[broom formula_tools]; }; PP = derive2 { name="PP"; version="0.6.3-11"; sha256="1z7v5jiljm534lhr92vz9z3cafwcp6hdxyrr1nhli2arxc1nin76"; depends=[Rcpp]; }; @@ -3576,7 +3472,7 @@ in with self; { PRDA = derive2 { name="PRDA"; version="1.0.0"; sha256="1lklwfakd54ylm5gizq36ng6498c2izapsz9yz2a95cjf860rr23"; depends=[MASS pbapply Rcpp RcppArmadillo]; }; PREPShiny = derive2 { name="PREPShiny"; version="0.1.0"; sha256="0zsg07y6nhp2lma3pdz8xd981y3mh8k21il5jv0inma1d1xr4g3f"; depends=[dplyr psycho rmarkdown shiny]; }; PRIMAL = derive2 { name="PRIMAL"; version="1.0.2"; sha256="04fn0c10v9ai7vrrd4qr84rid3x42wq749rn5p1i6nkvmjv3dnhs"; depends=[Matrix Rcpp RcppEigen]; }; - PRIMME = derive2 { name="PRIMME"; version="3.2-1"; sha256="13a62x095fm5sz02hdsb2x7msdp4arf8lcy94br2bdd1yc96q79z"; depends=[Matrix Rcpp]; }; + PRIMME = derive2 { name="PRIMME"; version="3.2-2"; sha256="0bjmyybzkk6gmghhbq93fs3fpv7b79zdzyp82crkl2fcma89652k"; depends=[Matrix Rcpp]; }; PRISM_forecast = derive2 { name="PRISM.forecast"; version="0.2.1"; sha256="07kq6fprbj8zccs6cx1aiy5mrcg77b0fh42zvg2pimbvr8cqhy31"; depends=[glmnet xts zoo]; }; PRISMA = derive2 { name="PRISMA"; version="0.2-7"; sha256="0sk2d07m8rhipa0kdbaf8ngryda6f1ihp5akpnyw2llajf0x8as5"; depends=[ggplot2 gplots Matrix]; }; PRISMA2020 = derive2 { name="PRISMA2020"; version="0.0.3"; sha256="1qbhgdv6l4aafqrxvxrrjinsnnhy8pj1lan54ylzzj1a0hyy4mkl"; depends=[DiagrammeR DiagrammeRsvg DT htmltools htmlwidgets rio rsvg scales shiny shinyjs stringr webp xml2]; }; @@ -3596,27 +3492,29 @@ in with self; { PResiduals = derive2 { name="PResiduals"; version="1.0-1"; sha256="0mq16cs07hw5c9jj08vpgbb15xvjvz9h0npsbqphiibsb6ca5fwb"; depends=[Formula MASS rms SparseM]; }; PSAgraphics = derive2 { name="PSAgraphics"; version="2.1.1"; sha256="05c0k94dxddyrhsnhnd4jcv6fxbbv9vdkss2hvlf3m3xc6jbwvh9"; depends=[rpart]; }; PSCBS = derive2 { name="PSCBS"; version="0.66.0"; sha256="14rs2wywipbkia3dbzfhpnkmfgdvm2bf586lggsx63sywlv5d02q"; depends=[aroma_light DNAcopy future listenv matrixStats R_cache R_methodsS3 R_oo R_utils]; }; - PSF = derive2 { name="PSF"; version="0.4"; sha256="1hjry8vjqr6zk2i2ppf3fcpsr4v4jm1705qv6i1iz2agl6g2rcnp"; depends=[cluster data_table forecast knitr]; }; + PSF = derive2 { name="PSF"; version="0.5"; sha256="00zwbw9bn5bs181m831nb08wwrmp2jpmqmriy8j52njq289hnc32"; depends=[cluster data_table]; }; PSGD = derive2 { name="PSGD"; version="1.0.0"; sha256="08wrz1vwvicjxjkj38xr28s84ckvyvaxybvb6fw8m3gkfmgkd7b8"; depends=[Rcpp RcppArmadillo]; }; PSIMEX = derive2 { name="PSIMEX"; version="1.1"; sha256="0cndzasvg4y49incyd9nfz8y3z88ywbc7xk0zzjir665pv2xn23b"; depends=[knitr MCMCglmm pedigree plotrix]; }; PSLM2015 = derive2 { name="PSLM2015"; version="0.2.0"; sha256="1f8kzlqil2ac8a9fbj9fhdni2narh2yaaz044mlx7gsv2ns3ai19"; depends=[dplyr ggplot2 magrittr]; }; - PSPManalysis = derive2 { name="PSPManalysis"; version="0.3.7"; sha256="1l8pik1abfrcid8ffwp3gjl9z5iby6l5xcmv1vcg1cbd96z4rvqn"; depends=[pkgbuild rstudioapi]; }; + PSPManalysis = derive2 { name="PSPManalysis"; version="0.3.8"; sha256="0vccvhda86430w3gkjhg565i77dci1aa6pizs61w1xjc75rrbnan"; depends=[pkgbuild rstudioapi]; }; PSS_Health = derive2 { name="PSS.Health"; version="0.4.0"; sha256="1vp25ga3pyj81jbxd54dmavaqdxjbib2d5sc9bc2mrbpmqspf5i6"; depends=[DT easypower EnvStats epiR ICC_Sample_Size kappaSize longpower plotly powerMediation powerSurvEpi presize pROC pwr pwr2 shiny shinycssloaders shinyFeedback shinyhelper tidyverse writexl]; }; PSSIM = derive2 { name="PSSIM"; version="0.1.0"; sha256="144lh31b1c4ycq0wrgf9745q0c8b5sfnmrd0f7vwx95i86bzr3mj"; depends=[]; }; PSSMCOOL = derive2 { name="PSSMCOOL"; version="0.2.4"; sha256="0iyhs2sas08kjl6hd0y4n4rz4lvvvlrz3w3izl3may6mscykrciy"; depends=[dtt gtools infotheo phonTools]; }; PST = derive2 { name="PST"; version="0.94"; sha256="0f28zrnlficbi9iil6wbh51k9mghpkz63hw05lpmlpx1yl5nd0a6"; depends=[RColorBrewer TraMineR]; }; PSW = derive2 { name="PSW"; version="1.1-3"; sha256="0ahm7rp795d7j88n15b3q0gl573p3g0krc7jd1zv87g4bsdc9b5x"; depends=[gtools Hmisc]; }; - PSweight = derive2 { name="PSweight"; version="1.1.6"; sha256="1llb6x30gn230qvgmfzd1fz7f8g6dgjy9mq0x8820mprpd9sjyxs"; depends=[gbm ggplot2 MASS nnet numDeriv SuperLearner]; }; + PSweight = derive2 { name="PSweight"; version="1.1.7"; sha256="1bxw41jpy4q3n9dx55ixm4lnzmha1xkpxxrbk12g0zvk84pph55p"; depends=[gbm ggplot2 lme4 MASS nnet numDeriv SuperLearner]; }; PTAk = derive2 { name="PTAk"; version="1.4-0"; sha256="0hm1xij32wgirj7k7qv162zl5r7aj1iyyhpnlbm9wx1mbw72ccbc"; depends=[tensor]; }; PTE = derive2 { name="PTE"; version="1.7"; sha256="1azkrij4kfmvp03lnzm88gwgvz8g54jq94j0qg8ynxvyjzrppc98"; depends=[doParallel foreach survival]; }; PTSR = derive2 { name="PTSR"; version="0.1.2"; sha256="0zwqw8zdp0p05nm64yg658iqfbj26n3v2py8r5m6g1sjispm5whf"; depends=[actuar extraDistr numDeriv SuppDists]; }; PTXQC = derive2 { name="PTXQC"; version="1.0.13"; sha256="08sknbjlsjj77jv2kbprrgiagnrhjdiv4n33053c36a1lxba7vc3"; depends=[data_table ggdendro ggplot2 gtable htmlTable jsonlite knitr magrittr ontologyIndex plyr R6 R6P RColorBrewer reshape2 rmarkdown seqinr UpSetR xml2 yaml]; }; PTwins = derive2 { name="PTwins"; version="0.1.1"; sha256="166mc7w52n9d3n72h5jvvhbki87prkils3yigdf57dn9pyixrd66"; depends=[]; }; PUMP = derive2 { name="PUMP"; version="1.0.0"; sha256="03xy77hq9d375v2hpszbnh700lkb4yfd2xn20lwh0bawx94m7rsy"; depends=[dplyr future ggplot2 ggpubr here magrittr mvtnorm purrr randomizr readr rlang stringr tibble tidyr tidyselect]; }; - PUPAIM = derive2 { name="PUPAIM"; version="0.2.0"; sha256="1ky6f4yhm3hjrfxwk8vfalzzjgkq1922my26w457q8nfng7f2m53"; depends=[Metrics minpack_lm nls2]; }; + PUPAIM = derive2 { name="PUPAIM"; version="0.3.0"; sha256="0j51a7x89m3fd508mg6z4nczaigvr70pd9244k7c6lh2bxvayj66"; depends=[ggplot2 Metrics nls2]; }; + PUPMCR = derive2 { name="PUPMCR"; version="0.1.0"; sha256="0pbxqa1d5b5gjwqwan0rsigzv4dcgjqn8gnzgf3sjsvi0xwz956z"; depends=[colordistance readxl]; }; PUlasso = derive2 { name="PUlasso"; version="3.2.4"; sha256="0mcmya0a5wzmssq05vpmkx9icfrq49kc0dc9ri3d9kx4w0sabffh"; depends=[doParallel foreach ggplot2 Matrix Rcpp RcppEigen]; }; PVAClone = derive2 { name="PVAClone"; version="0.1-6"; sha256="0fj5p3z2cwnyshrr4rq88wpij2xax5p4aq0x4p342kadx9d6x2ga"; depends=[coda dclone dcmle]; }; PVR = derive2 { name="PVR"; version="0.3"; sha256="0pcnazkiwmicr3k6k70r8skqk0pd46fcqhhxghawxjs4slgnygkj"; depends=[ape MASS splancs]; }; + PVplr = derive2 { name="PVplr"; version="0.1.1"; sha256="1ngynlm2vxnmnbs0091r7q4m33dgkyawvcyskmxw1inxi6dkypk8"; depends=[broom cluster dplyr forecast ggplot2 magrittr minpack_lm purrr rlang scales segmented stlplus tidyr zoo]; }; PWD = derive2 { name="PWD"; version="1.0"; sha256="0ksr3biaqd4p5a4lv28i4cwk1fn9822ndq2161mgvc1c344p06fj"; depends=[Rcpp RcppArmadillo]; }; PWEALL = derive2 { name="PWEALL"; version="1.3.0"; sha256="0nb0v6wvj9ay90qcbrr9drg2g84fb7a9m78pzb69wp8789i8ixhk"; depends=[survival]; }; PWFSLSmoke = derive2 { name="PWFSLSmoke"; version="1.2.117"; sha256="0140j2bg6mqxsg86ndq3c0ls1kdvd33r2qrwih2cjgmnfq31adkj"; depends=[cluster curl dplyr dygraphs geosphere ggmap glue httr jsonlite leaflet lubridate magrittr mapproj maps maptools MazamaCoreUtils MazamaSpatialUtils openair png purrr raster RColorBrewer readr reshape2 rgdal RgoogleMaps rlang sf slippymath sp stringr tibble tidyr xts]; }; @@ -3635,7 +3533,7 @@ in with self; { PakPMICS2018hh = derive2 { name="PakPMICS2018hh"; version="0.1.0"; sha256="0wkjxy8qkndhnyf1w03cr3g7s03cm60yn0lxn5j6hvh019b28nmz"; depends=[tibble]; }; PakPMICS2018mm = derive2 { name="PakPMICS2018mm"; version="0.1.0"; sha256="08f2n134q545kwysy705mgsy6319ns4l9pwxldlxvbzq0lha4hf9"; depends=[tibble]; }; PakPMICS2018mn = derive2 { name="PakPMICS2018mn"; version="0.1.0"; sha256="1r5cn1mx7i7hif64lhfcdz4xqqfj3j45i092370xhhi19pqq217n"; depends=[tibble]; }; - PamBinaries = derive2 { name="PamBinaries"; version="1.6.0"; sha256="1vq0s1l8xz7g927x19fw0nqcpk65mjq9s50506d7ib42qhk6xdvb"; depends=[dplyr ggplot2]; }; + PamBinaries = derive2 { name="PamBinaries"; version="1.7.0"; sha256="0kih9h11vvnbyai6mqnjk2hwbsa44mzamxb318rc503b2qq8dgzb"; depends=[dplyr ggplot2]; }; PanCanVarSel = derive2 { name="PanCanVarSel"; version="0.0.3"; sha256="06xkzg2kvyr6ivm1z71x2pk20j37h36sx6kf4kmc8q50cq73k9jl"; depends=[Matrix msm mvtnorm smoothmest]; }; PanJen = derive2 { name="PanJen"; version="1.6"; sha256="18cl9rls98v286kk6lyxxws3w59zpzgmqi5250gdgcf71xy2lhvm"; depends=[mgcv]; }; PanelCount = derive2 { name="PanelCount"; version="1.0.9"; sha256="1b6c83qypjc3ylvhh24xm4pjk8w34s24v0i9ddlmg92f1518hlkj"; depends=[Rcpp RcppArmadillo statmod]; }; @@ -3644,7 +3542,7 @@ in with self; { PantaRhei = derive2 { name="PantaRhei"; version="0.1.2"; sha256="0lv04aa70yd5gr0zfh2gmah4d4h3kw0lym6284akcvll8mhdi8dd"; depends=[]; }; ParBayesianOptimization = derive2 { name="ParBayesianOptimization"; version="1.2.4"; sha256="0x6r54gawbfa75qmadhbxw9mgbinwxl84h54w6j6iwg3jbyrnzp8"; depends=[crayon data_table dbscan DiceKriging foreach ggplot2 ggpubr lhs]; }; ParDNAcopy = derive2 { name="ParDNAcopy"; version="2.0"; sha256="017xwznhfibi8kp0ifww02c0qcq0vxs06rjww4kcp2bvdmld8kc4"; depends=[DNAcopy]; }; - ParallelDSM = derive2 { name="ParallelDSM"; version="0.3.1"; sha256="02m7hvjjzwxz1apw4dv8ypxkd8i41if5s83fp2algf4kyv2s44nx"; depends=[caret geoR gstat pryr quantregForest randomForest raster rgdal snowfall sp stringr]; }; + ParallelDSM = derive2 { name="ParallelDSM"; version="0.3.2"; sha256="0qy77jxwlkh1rwwzawbmbz8a5hqma26lnak0iy0y6m4rrg03rmnz"; depends=[caret gstat pryr quantregForest randomForest raster rgdal snowfall sp stringr]; }; ParallelLogger = derive2 { name="ParallelLogger"; version="3.0.0"; sha256="1vvh1kzdq3bz7s3yg8kr3zc15qj0qy3d4k13ygd546374w1ywn0k"; depends=[jsonlite snow xml2]; }; ParallelPC = derive2 { name="ParallelPC"; version="1.2"; sha256="07y7xb16865khxkvwsk1yglzyy7ja4aj2wpkipaz48i77c3x8bi2"; depends=[]; }; ParamHelpers = derive2 { name="ParamHelpers"; version="1.14"; sha256="1sx2ddm8hwvvmk0z65wa689w80py3fny82zjd4d29qwxlv854xmi"; depends=[backports BBmisc checkmate fastmatch]; }; @@ -3675,7 +3573,7 @@ in with self; { PerfMeas = derive2 { name="PerfMeas"; version="1.2.1"; sha256="1x7ancmb41zd1js24rx94plgbssyc71z2bvpic6mg34xjkwdjw93"; depends=[graph limma RBGL]; }; PerformanceAnalytics = derive2 { name="PerformanceAnalytics"; version="2.0.4"; sha256="0ci26hsj4wnw9g0mh4vrn0cg986cpcpx169rvw6v6rbnjxq718bq"; depends=[quadprog xts zoo]; }; PeriodicTable = derive2 { name="PeriodicTable"; version="0.1.2"; sha256="133rwbvapk99dmh3vi8p7sa81d7hjmy0g4a5hcmwr3mdq8jzgwrj"; depends=[]; }; - PermAlgo = derive2 { name="PermAlgo"; version="1.1"; sha256="16fhdgr4nza9yknsbwiv8pgljfwp8hhva0crs4dbfd0w4j97n5fp"; depends=[]; }; + PermAlgo = derive2 { name="PermAlgo"; version="1.2"; sha256="0hwla559vfv0r8bhrc8g0cvbsjgg4f3nx4y1hb4fxkvddi6pfb5a"; depends=[]; }; PermutationR = derive2 { name="PermutationR"; version="0.1.0"; sha256="1rxz5zkl99bkx6zw8mkr4zr02g7w8wkc9sz3z2wwvgb8rmb7vyir"; depends=[]; }; PerseusR = derive2 { name="PerseusR"; version="0.3.4"; sha256="1k03flbnjndx5mm26hysk64z89858m50kjs8gyldm4s5f09iny6p"; depends=[Biobase plyr stringr XML]; }; PersianStemmer = derive2 { name="PersianStemmer"; version="1.0"; sha256="1dpfkafijg7g7hzka93l1ymq5rcnjsfgvkvbpdx3vjnid05kh4v1"; depends=[]; }; @@ -3683,8 +3581,7 @@ in with self; { PesticideLoadIndicator = derive2 { name="PesticideLoadIndicator"; version="1.2.0"; sha256="1r85rixflkp6rrjxz44msymw44braych3wcs175lv33snf8n6l3n"; depends=[dplyr magrittr readxl rlang stringr]; }; PetfindeR = derive2 { name="PetfindeR"; version="2.1.0"; sha256="1pb3mqv4pxl971j210m7vwhz9qqbhb7l5fpmb1vjwkc5hx11zh9l"; depends=[R6]; }; PhViD = derive2 { name="PhViD"; version="1.0.8"; sha256="038pw24sb8ja8pbbmj05rww6413i2ljybb2dxwgrpffv22aqawmc"; depends=[LBE MCMCpack]; }; - PhageCocktail = derive2 { name="PhageCocktail"; version="1.0.0"; sha256="1hkwp0vscmpfa70qhd9gj7x2r9cpx9cm51l11l8fdammgylmlfyy"; depends=[bipartite factoextra readxl RJSONIO smerc stringr]; }; - PharmPow = derive2 { name="PharmPow"; version="1.0"; sha256="0gabkd8p4zsig9p697lyk8m2jxb5abjk81rpzd5ih1yk1qanhsn5"; depends=[scatterplot3d]; }; + PhageCocktail = derive2 { name="PhageCocktail"; version="1.0.3"; sha256="0lr1gnwpaqrf8ny5ssx2cjv8hi6q2ilmr7qif3jl9agh4w0nkp89"; depends=[bipartite factoextra readxl RJSONIO smerc stringr]; }; Phase123 = derive2 { name="Phase123"; version="2.1"; sha256="0bz867wsnrflzlzrql1vgacymx70rb9wik9jw3g34i2vigpl8x8i"; depends=[Rcpp RcppArmadillo survival]; }; Phase12Compare = derive2 { name="Phase12Compare"; version="1.5"; sha256="0n9rjgdllpnj451a8d4p8x3mjf23czcmk7cn1c9v3l7mg4jn18h2"; depends=[mvtnorm Rcpp RcppArmadillo]; }; PhaseTypeR = derive2 { name="PhaseTypeR"; version="1.0.2"; sha256="0xm8h1wnq4j76my5ygih8ykrkji70fw74s9bpn2fwxm069h38npy"; depends=[expm igraph]; }; @@ -3693,6 +3590,7 @@ in with self; { PheVis = derive2 { name="PheVis"; version="1.0.2"; sha256="0pb6lxyz0ikgl64872dqjk1zj7pa793ggrp53hrg2y5m76wn8drr"; depends=[dplyr ggplot2 glmnet knitr lme4 purrr randomForest Rcpp tidyr viridis zoo]; }; Phenotype = derive2 { name="Phenotype"; version="0.1.0"; sha256="0bfg2vk35hrfzmpjpnv3yhnsfr17505c49msbppqrrbpw5wgawy5"; depends=[lme4 tidyr]; }; PhenotypeSimulator = derive2 { name="PhenotypeSimulator"; version="0.3.4"; sha256="19c79kls6i1qpsk41lp8whva5in47m2wlr0v3ggw5bblp4fkd43m"; depends=[cowplot data_table dplyr ggplot2 Hmisc mvtnorm optparse R_utils Rcpp reshape2 snpStats zoo]; }; + PhilipsHue = derive2 { name="PhilipsHue"; version="1.0.0"; sha256="03ghwi14jsz1ff70dl30p6w0d9v29kc70kip2bcinxm6v4l2q383"; depends=[httr pkgload purrr yaml]; }; PhitestR = derive2 { name="PhitestR"; version="0.2.0"; sha256="113f176q9kaghmqivqcg9l6zczx7dmawhybb8hwb2xpb0mhcgh4l"; depends=[fitdistrplus]; }; PhotosynQ = derive2 { name="PhotosynQ"; version="0.2.3"; sha256="10n06sfbwv5w96m3yv5ws7yddfv2n8pp1rc730870wiavl6cbn63"; depends=[getPass httr]; }; Phxnlme = derive2 { name="Phxnlme"; version="1.0.0"; sha256="0h9mi8p95rp1s8xsdv38j9fpy2cy9zvjnldjmnj0n469kimp2782"; depends=[ggplot2 gridExtra lattice manipulate testthat]; }; @@ -3703,18 +3601,17 @@ in with self; { PhysicalActivity = derive2 { name="PhysicalActivity"; version="0.2-4"; sha256="0b27prkv3x6v2afz0y53ccs9scibpc7nj54n0hpd9fgn1wyg4c40"; depends=[]; }; PieceExpIntensity = derive2 { name="PieceExpIntensity"; version="1.0.4"; sha256="023hq0gg1vi0j3yf8p5lisgs8wfp5qwyd4akxxzx7wad2985gxb3"; depends=[Rcpp RcppArmadillo]; }; Pijavski = derive2 { name="Pijavski"; version="1.0.3"; sha256="0jspc19fn1mqv3zjr89sy7rqbbyjk3ij3rhrg2dsw167w63lpykx"; depends=[Rcpp]; }; - PivotalR = derive2 { name="PivotalR"; version="0.1.18.5"; sha256="1xcr7769d9jixq0lbc89jqzzxnnzxb8gjlws2l6cjm40hcid2yc9"; depends=[Matrix semver]; }; PlackettLuce = derive2 { name="PlackettLuce"; version="0.4.1"; sha256="1l3lh4nvadr4qrpx8mdw7bgaq1w9fhkkaz42pc9hkwbp76brb52i"; depends=[CVXR igraph Matrix matrixStats partykit psychotools psychotree qvcalc R6 RSpectra sandwich]; }; PlaneGeometry = derive2 { name="PlaneGeometry"; version="1.3.1"; sha256="1ylf7770pz16gh823kf3r2lh5cipkm81s1d9nwp01rapi4zzb6cd"; depends=[fitConic gsl R6 sdpt3r stringr uniformly]; }; Planesmuestra = derive2 { name="Planesmuestra"; version="0.1"; sha256="0v7l4hrfckcf7zmk0ihq2ij0qli7x12j17vd6752d1yjk27fgk57"; depends=[]; }; PlanetNICFI = derive2 { name="PlanetNICFI"; version="1.0.4"; sha256="0xjvdz1vk8wkq8b58l9rm2x4nci76k09kx3vdjhqjgcq0a4kyvql"; depends=[data_table glue httr sf terra]; }; PlasmaMutationDetector = derive2 { name="PlasmaMutationDetector"; version="1.7.2"; sha256="0qra7q2pzw212qylyrfhv6zjcsldfw84b93cari0qjqnw4gyfph2"; depends=[GenomicRanges ggplot2 robustbase Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; + PlasmaMutationDetector2 = derive2 { name="PlasmaMutationDetector2"; version="1.1.11"; sha256="1dcmw6i488gxqqn52r0n9aclnz41ba2gc99vf6ac1wx5flcfm3l9"; depends=[GenomicRanges ggplot2 robustbase Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; Plasmidprofiler = derive2 { name="Plasmidprofiler"; version="0.1.6"; sha256="10m3knmz0596rm30ncyfprar6l42bjm7r34n4pjz1biqmiz6yz6k"; depends=[ape dplyr gdata ggdendro ggplot2 gridExtra gtable htmlwidgets magrittr plotly plyr RColorBrewer reshape2 stringr]; }; - Platypus = derive2 { name="Platypus"; version="3.3.2"; sha256="0k0c8i0an9pvk4j185s7dacp43fi5439mri4liy42h62kwkf0sl9"; depends=[BiocGenerics Biostrings dplyr ggplot2 jsonlite knitr Matrix plyr reshape2 seqinr Seurat SeuratObject stringr tibble tidyr useful]; }; + Platypus = derive2 { name="Platypus"; version="3.3.5"; sha256="1bds5qfxi8hv9jnj696gd0laqy9d0cz8zzy8bmpnlcay3qykb1a3"; depends=[BiocGenerics Biostrings cowplot dplyr ggplot2 jsonlite knitr Matrix plyr reshape2 seqinr Seurat SeuratObject stringr tibble tidyr useful]; }; PlayerRatings = derive2 { name="PlayerRatings"; version="1.1-0"; sha256="04hdjv1gb5b3zym2ryjpqrqhs823nlkmbimfnxw1cfn921ljjgpj"; depends=[]; }; PlotContour = derive2 { name="PlotContour"; version="0.1.0"; sha256="0jjzrxmx1k1s8fyfs9m5a864pmvjh2bdklbhrc3nbhb0c7wd3h9z"; depends=[KernSmooth MASS]; }; PlotPrjNetworks = derive2 { name="PlotPrjNetworks"; version="1.0.0"; sha256="13kbyx2phxb3kss6l32f7krf4k5i350indlsmbhav686v0h3nsgp"; depends=[ggplot2 reshape2]; }; - PlotRegionHighlighter = derive2 { name="PlotRegionHighlighter"; version="1.0"; sha256="0n1nkfr3sdaq6f5p9kgx4slrsvhpdbax3rinrkfkb1vnjj4swj77"; depends=[]; }; PoA = derive2 { name="PoA"; version="1.2.1"; sha256="0y8aqz1ainxdglxlfp9iqhvkmirpmc7dvwrcxz2l8lln86yrfqx6"; depends=[dplyr nloptr pracma tibble]; }; PoDBAY = derive2 { name="PoDBAY"; version="1.4.3"; sha256="1c1dmggcc8k4h56063r97gjavd44llc51j54qs1wck9zir414i8w"; depends=[dplyr ggplot2 Rcpp]; }; PoPdesign = derive2 { name="PoPdesign"; version="1.0.1"; sha256="14bfxsnbbyfql590f2yhm161qdbnfj7apb0jpiiw5d2bpppx3np8"; depends=[Iso knitr magick]; }; @@ -3735,8 +3632,8 @@ in with self; { PolyHaplotyper = derive2 { name="PolyHaplotyper"; version="1.0.1"; sha256="1sc1n42h78nyv004ddykvh1ljjczyiv5rl9sgxhi207lql1zd3wa"; depends=[XML]; }; PolyPatEx = derive2 { name="PolyPatEx"; version="0.9.2"; sha256="1z1hwvsw7b6cz5xfy35a5ldrzb3fhp3swiyz56v1zqblpsaz8n9g"; depends=[gtools]; }; PolyTrend = derive2 { name="PolyTrend"; version="1.2"; sha256="17n6phkzgaqrlzs8x1l5smnij1gxfklr0zj9pqfy5n8xqnpwssm5"; depends=[]; }; - Polychrome = derive2 { name="Polychrome"; version="1.3.1"; sha256="044vbylgbqf0ccv4r15nmbw1vz0j95g67i6blw73hvbvbm6w5x4d"; depends=[colorspace scatterplot3d]; }; - PolynomF = derive2 { name="PolynomF"; version="2.0-3"; sha256="067l71i2zjv6gvd0br2m034ls3r5lcmc0amml1qbj4wchd7mqlw9"; depends=[Rcpp]; }; + Polychrome = derive2 { name="Polychrome"; version="1.5.1"; sha256="0hyi02m2jpdhk1ky6ihz6dv5pwqwjwk4csjim2qr8ywx8midmrvg"; depends=[colorspace scatterplot3d]; }; + PolynomF = derive2 { name="PolynomF"; version="2.0-5"; sha256="0asv2ggf5j4ihndv9fbd1y03iq1r599m4w9s42jn34wcfs67lvx8"; depends=[Rcpp]; }; Pomic = derive2 { name="Pomic"; version="1.0.4"; sha256="0xy5fgimbgqqac3n7akhwyvnrvd9fpvx9h8nk4spxrxc8x0km1w7"; depends=[]; }; PoolTestR = derive2 { name="PoolTestR"; version="0.1.2"; sha256="0bl8zgfdaff9h77cnv8y7y152pq930svr0jwhpnz7a4ig446n66g"; depends=[BH brms dplyr lme4 progress Rcpp RcppEigen rstan rstantools StanHeaders stringr]; }; PooledCohort = derive2 { name="PooledCohort"; version="0.0.1"; sha256="1zf8waqiw4282iyr30byd7czrdnf9rvp3mra6b7slqqs1z53lhr2"; depends=[glue]; }; @@ -3745,13 +3642,14 @@ in with self; { PopGenReport = derive2 { name="PopGenReport"; version="3.0.4"; sha256="0x9j9f9k65rfr4fxyrxqa9220psfh1bicls6vwbxmqsfdsfnvs0j"; depends=[ade4 adegenet calibrate data_table dismo gap gdistance genetics GGally ggplot2 knitr lattice mmod pegas plyr R_utils raster reshape rgdal RgoogleMaps sp vegan xtable]; }; PopGenome = derive2 { name="PopGenome"; version="2.7.5"; sha256="0xdwgih1n7bkykbzrnp293yzrlj80vr2v6rlsww61nxlhynbh9yn"; depends=[ff]; }; PopVar = derive2 { name="PopVar"; version="1.3.0"; sha256="1yc2qz7g5jv752yrhjq1ymfdjbqwdcp0hv7pm93qsn51k8fc8i9i"; depends=[BGLR qtl rrBLUP]; }; + PopulationGrowthR = derive2 { name="PopulationGrowthR"; version="0.1.1"; sha256="0cq7vnmslb4y9d9a4jk7z5xajw4vr2q1qqhkak9m9gidyr4dp5zl"; depends=[dplyr]; }; PortRisk = derive2 { name="PortRisk"; version="1.1.0"; sha256="05yxqcv0cijy3s9zx68f9xy59jv55kmj3v0pz5pgl17j23kb9rlc"; depends=[copula MASS MCMCpack tseries zoo]; }; PortalHacienda = derive2 { name="PortalHacienda"; version="0.1.6"; sha256="11fcd1m751xahv13s61n2lzxqxhzfkcxk3zv9kyjvrzb0fiy4jss"; depends=[curl dplyr forecast httr lubridate magrittr purrr tibble timetk xts zoo]; }; PortfolioAnalytics = derive2 { name="PortfolioAnalytics"; version="1.1.0"; sha256="1jy89brrdw8ilbi9pjxxq5yhqw85ik4kzdd2sa60crjlhvipx0ff"; depends=[foreach PerformanceAnalytics xts zoo]; }; PortfolioEffectEstim = derive2 { name="PortfolioEffectEstim"; version="1.4"; sha256="1sfgkwyn7vfy3rqb1cglywiv5xmyxhzvj38vgrvfq5jf3hvzsg21"; depends=[PortfolioEffectHFT rJava]; }; PortfolioEffectHFT = derive2 { name="PortfolioEffectHFT"; version="1.8"; sha256="0y4x0d91j6g52136d921hfs5swzf85gkxafxfkf3c15dl5ns120v"; depends=[ggplot2 rJava zoo]; }; PortfolioOptim = derive2 { name="PortfolioOptim"; version="1.1.1"; sha256="01fw1zr1gr6nlcgw8dlc66b3ygkl6w571lw73p13h0q17y1i872d"; depends=[Rsymphony]; }; - PosRatioDist = derive2 { name="PosRatioDist"; version="1.0.1"; sha256="11909qi7qm856nvpj1m25mpy8gig5dc3q2wc8rzjlxp8md5a8lax"; depends=[BMS mvtnorm NORMT3]; }; + PosRatioDist = derive2 { name="PosRatioDist"; version="1.2.1"; sha256="0hjjnc3k12ckydi0kk1l2z5dsni7zbjk346b50markzmd18qppcn"; depends=[mvtnorm]; }; PostcodesioR = derive2 { name="PostcodesioR"; version="0.3.1"; sha256="0mxfcc913l6mhijzfn5rqmri7qbdg1g94g4nqadyxkzw067w7drh"; depends=[httr]; }; PosteriorBootstrap = derive2 { name="PosteriorBootstrap"; version="0.1.1"; sha256="12ial0bcrh3k3z5927zh0bvd413jrz606b07jgbym87kb3n1fxbi"; depends=[dplyr e1071 ggplot2 gridExtra MASS Rcpp rstan StanHeaders tibble]; }; PottsUtils = derive2 { name="PottsUtils"; version="0.3-3"; sha256="165k4sjh3kqkb8bzi68wx00yl77yfbgs70fcbpzmsmcw4g4hdpzn"; depends=[miscF]; }; @@ -3764,7 +3662,7 @@ in with self; { PreKnitPostHTMLRender = derive2 { name="PreKnitPostHTMLRender"; version="0.1.0"; sha256="1749cd734f4bf0n4068s2m617k6as8h9bwp44mm3la2xy3vjf5g1"; depends=[knitr rmarkdown XML]; }; PreProcess = derive2 { name="PreProcess"; version="3.1.7"; sha256="1fxzkmrj76mc94xdj7a0nq450021i1jxkigmh5jhrmamkp5581jf"; depends=[oompaBase]; }; PreProcessing = derive2 { name="PreProcessing"; version="0.1.0"; sha256="08wrdg3q7r8h7lqn3yppl3qqlhnaak81vd9ymqlkzw92981rxxzx"; depends=[ggplot2]; }; - PreciseSums = derive2 { name="PreciseSums"; version="0.4"; sha256="054y84w3i5yrq74w2hsdxz1z1glccy540dq4jxicnknkkp2c0nmx"; depends=[]; }; + PreciseSums = derive2 { name="PreciseSums"; version="0.5"; sha256="18lkvh4p8cfh76530bsmb70qz32xi6qvv50v7jsd3f3bpyi5jsps"; depends=[]; }; PredCRG = derive2 { name="PredCRG"; version="1.0.2"; sha256="0z84p8l2q66rapb9lhx8m8iadz3q989q5qkvcp8ylv80cz6qkibx"; depends=[Biostrings e1071 kernlab Peptides protr]; }; PredPsych = derive2 { name="PredPsych"; version="0.4"; sha256="00h4p1szqzh4a2kjvlriyinh330cfwxsrvs6fi089mr207q890vj"; depends=[caret e1071 ggplot2 MASS mclust party plyr randomForest rpart statmod]; }; PredictABEL = derive2 { name="PredictABEL"; version="1.2-4"; sha256="144xmfsp62ssmg501f4y173jrqyv8vps36j4yrwg6ghcmyc01wf8"; depends=[Hmisc lazyeval PBSmodelling ROCR]; }; @@ -3774,7 +3672,6 @@ in with self; { PressPurt = derive2 { name="PressPurt"; version="1.0.2"; sha256="05kca0rlhlvhgnw3r3p4sh42zwvhrhcjdwz65ykp14jxybfhc8in"; depends=[data_table ggplot2 gridExtra reticulate]; }; PrevMap = derive2 { name="PrevMap"; version="1.5.4"; sha256="12cw4dmbsnx9c4y5l5k0paqn1wwbxy9ciw46r254n5rd275fhksh"; depends=[lme4 Matrix maxLik numDeriv pdist raster splancs truncnorm]; }; PriceIndices = derive2 { name="PriceIndices"; version="0.0.7"; sha256="0bmzlvlvri0ryhzq40hqbv7cg883jdp0hx0xrfr94hlp1rji2ihj"; depends=[caret dplyr ggplot2 lubridate reclin reshape strex stringr xgboost]; }; - PriorCD = derive2 { name="PriorCD"; version="0.1.0"; sha256="1mb50w2i8sfxjzqd5xnfysn3jnzkkyv6l8algxnp0xpyhcq41pfs"; depends=[dplyr igraph ROCR visNetwork]; }; PriorGen = derive2 { name="PriorGen"; version="1.1.2"; sha256="0qvdqqdy7wdwwcq95mkgfyf7xf6xlpwdfs3gq299yyv2ba57flnm"; depends=[rootSolve]; }; PrivateLR = derive2 { name="PrivateLR"; version="1.2-22"; sha256="0d142fa3wk7yadvs8jszajs6hq9m03p0j6h5r4pbw7j0d1l72hgc"; depends=[]; }; ProAE = derive2 { name="ProAE"; version="0.2.8"; sha256="1dx5ddkvd8a8z53y1bvx7w7iljyzg15g1gcwqza0skc14s62p4zk"; depends=[DescTools dplyr ExactCIdiff ggnewscale ggplot2 ggtext gridExtra Hmisc magrittr]; }; @@ -3796,20 +3693,18 @@ in with self; { ProfessR = derive2 { name="ProfessR"; version="2.4-1"; sha256="1wsbx0dsygc1ipzhgs1pd0lhdb0qvp4ydqzwarn6zv27rzf4p3bd"; depends=[RPMG]; }; ProfileLikelihood = derive2 { name="ProfileLikelihood"; version="1.2"; sha256="18m4gk7rhfi0wd9hwmqhfa20gr260plvj41iimlqb5y9m2ld1b08"; depends=[MASS nlme]; }; ProfoundData = derive2 { name="ProfoundData"; version="0.2.1"; sha256="1zqg821pv3i5nf76s7yppnmy13y14pj0l7rjhk50wlxrxdb53ibz"; depends=[DBI RNetCDF RSQLite settings sqldf zoo]; }; - ProjectManagement = derive2 { name="ProjectManagement"; version="1.4.3"; sha256="017f2rp3jnss65jn9pi0fg69frp23h2z127zrxa5wap3wdw5b49i"; depends=[GameTheory igraph kappalab lpSolveAPI plotly triangle]; }; + ProjectManagement = derive2 { name="ProjectManagement"; version="1.4.6"; sha256="1sji2h3qz6zxd7jz0d3rqkkbqysmzfg07fzvn6i9n3hhfbqdf8sv"; depends=[GameTheory igraph kappalab lpSolveAPI plotly triangle]; }; ProjectTemplate = derive2 { name="ProjectTemplate"; version="0.10.2"; sha256="0r1af5h24nbgr39njchnqd54cw7cyzsw8k1qind8h5af491wmq0h"; depends=[digest tibble]; }; ProjectionBasedClustering = derive2 { name="ProjectionBasedClustering"; version="1.1.6"; sha256="0b2bljw5gslkw6jkajnk3jsx1kgi7bk9vrnivgkaxq76qi8bgsr9"; depends=[deldir GeneralizedUmatrix geometry ggplot2 plotly Rcpp shiny shinyjs shinythemes vegan]; }; ProliferativeIndex = derive2 { name="ProliferativeIndex"; version="1.0.1"; sha256="03ipsbs8pfwr8wsx7j2y9c67ic4qcady7xpa47l8dr14ff63cfk7"; depends=[]; }; PropCIs = derive2 { name="PropCIs"; version="0.3-0"; sha256="1ywzi88igzaj2wnbrqa08cy7pw886z2m0x3j7rk45rin9mgpfdfd"; depends=[]; }; PropClust = derive2 { name="PropClust"; version="1.4-6"; sha256="1p15n98b6qprphgbhdqgnsxy9d9kik19h6j9f2dy6x1hkinrzsfa"; depends=[dynamicTreeCut fastcluster]; }; - PropScrRand = derive2 { name="PropScrRand"; version="1.1"; sha256="0cj62dzg4zm8d1g8h7qmviiwm93cwplppbi0p674fmmf1wy84v9s"; depends=[]; }; - PropensitySub = derive2 { name="PropensitySub"; version="0.2.0"; sha256="0cx8f3pcn37vrk1d3jbsnpkcdd1pf8xi4v7si4ii4rkxr2iszahd"; depends=[dplyr ggplot2 gridExtra gtable Matching nnet plyr pROC rlang scales survival survminer]; }; + PropScrRand = derive2 { name="PropScrRand"; version="1.1.1"; sha256="0p83pw1msngaiglwyv385s91r66whx6al9gkxs5bnmsn2a7bkrbl"; depends=[]; }; Przewodnik = derive2 { name="Przewodnik"; version="0.16.12"; sha256="1aq80aqflfm1ypqa51h10mc3g0qdr651j6g1b7008k7h0ryq42gv"; depends=[PBImisc PogromcyDanych]; }; Pstat = derive2 { name="Pstat"; version="1.2"; sha256="17bqkaf9590jhiaamaafmvkqmy2aqkcfqhk8m4w35g58j48yk4yx"; depends=[]; }; PsumtSim = derive2 { name="PsumtSim"; version="0.4"; sha256="0079kb1bgsxs4cwmn33rbbk2jgq39rdjfgz9k9hc64iyzz0i6na3"; depends=[boot EffectsRelBaseline]; }; PsyControl = derive2 { name="PsyControl"; version="1.0.0.0"; sha256="1c5ml6s3c8kzf7p0mig84bmq40b0491ah713bm6jpy2s3nwnmafs"; depends=[irtoys ltm]; }; PtProcess = derive2 { name="PtProcess"; version="3.3-16"; sha256="1d5i847jy9i1llbfsdkqcjmiids3kjxnqscinrwqyv7mwb9ijk2z"; depends=[]; }; - PubBias = derive2 { name="PubBias"; version="1.0"; sha256="0dr5dhfx57knrs05pbx9ngg4k2937n8gjzsgd0jfqd8dfxhy051k"; depends=[R_utils rmeta]; }; PubMedMining = derive2 { name="PubMedMining"; version="1.0.0"; sha256="03lhml5jk69racmhlh6xa8j2rv8xb87vg6hr1caiqpd4kqg16n1q"; depends=[easyPubMed stringr]; }; PubMedWordcloud = derive2 { name="PubMedWordcloud"; version="0.3.6"; sha256="1wfp1fpr4an7psrwidx38brvhvghmvfsgjy4gdx81p1bdsdn2kw2"; depends=[RColorBrewer RCurl stringr tm wordcloud XML]; }; PublicationBias = derive2 { name="PublicationBias"; version="2.2.0"; sha256="1mdvzf2qiq4zvp4iinjnnj0rq3dqcz18r27nr62znh05jp6i96gx"; depends=[dplyr ggplot2 metafor MetaUtility Rdpack robumeta]; }; @@ -3824,7 +3719,7 @@ in with self; { Q7 = derive2 { name="Q7"; version="0.1.0"; sha256="09jhqraajvlm7iiri4f7xlllkcx8q5h3sg472ishj47wg5qf2rym"; depends=[magrittr]; }; QAIG = derive2 { name="QAIG"; version="0.1.7"; sha256="04ygizvplvrzhf1p0vwj75x7k8sl0ym5zbrsvn63y983awih2p6i"; depends=[Formula stringr]; }; QBMS = derive2 { name="QBMS"; version="0.7.0"; sha256="14mq0l2ih6vchn7q2ssscxyrhrvfic3hnb4qyhd6sfy9a8cs8klm"; depends=[httr jsonlite]; }; - QCA = derive2 { name="QCA"; version="3.15"; sha256="1rijfdslq44w8abamplhj5f0l9jq43jcklcza64rfyxqfavc8mia"; depends=[admisc shiny venn]; }; + QCA = derive2 { name="QCA"; version="3.16"; sha256="155i05y37d6dw8icp8h2sa76pb678ww1q39as4rbpvvdfcza5v7l"; depends=[admisc shiny venn]; }; QCAcluster = derive2 { name="QCAcluster"; version="0.1.0"; sha256="094p11c9arry793zibr8x3xhpbrym9bfky95nds53g3yliprdd63"; depends=[data_table magrittr plyr purrr QCA rlist stringi testit UpSetR]; }; QCAfalsePositive = derive2 { name="QCAfalsePositive"; version="1.1.1"; sha256="03qzb6vdnbri52gfx3laz14988p2swdv9m8i5z7gpsv3f3bjrxbp"; depends=[]; }; QCApro = derive2 { name="QCApro"; version="1.1-2"; sha256="1glfb1x1h05cs07nq5glqvlil58wp3c0kaxi1l7k94y797i8r7hq"; depends=[lpSolve]; }; @@ -3858,7 +3753,7 @@ in with self; { QTLEMM = derive2 { name="QTLEMM"; version="1.1.0"; sha256="0gwxrsbpbn1v3z0yal8qrnamzq1gjax9d9nja8bbcgw8cbf3gamf"; depends=[mvtnorm]; }; QTLRel = derive2 { name="QTLRel"; version="1.9"; sha256="10lydj6zgijk2dxkncp35vrvic1v2s3v1zv44w7xi1i3wb3ifksx"; depends=[gdata lattice]; }; QTOCen = derive2 { name="QTOCen"; version="0.1.1"; sha256="0wlbxk1rd56k02jf3pfzbx6xx5mmf6sb7gvds0067cvb7m42ghcr"; depends=[MatrixModels quantreg Rdpack rgenoud survival]; }; - QUALYPSO = derive2 { name="QUALYPSO"; version="1.2"; sha256="0hp99hhlv7rijn34ncshpvbnmhbx3f5km7bzr0z7yr7l3j1vx3sc"; depends=[doParallel expm foreach MASS Rfast]; }; + QUALYPSO = derive2 { name="QUALYPSO"; version="2.0"; sha256="1g87763x5dzjlbq15wrpv46pgv5ds8gf9c4pqjj3l43827wzqxpb"; depends=[doParallel expm foreach MASS Rfast]; }; QWDAP = derive2 { name="QWDAP"; version="1.1.17"; sha256="1yq2xm5a1im8g65j89d6xqfbknlrpfh9lpm1ggmn5fw8wq4519ni"; depends=[CORElearn pls Rcpp RcppEigen]; }; QZ = derive2 { name="QZ"; version="0.2-2"; sha256="13s9yp9dz95iar2s8mhyi1sfba4wsdddpjard01665s34cvf1xw9"; depends=[Matrix]; }; Qapprox = derive2 { name="Qapprox"; version="0.2.0"; sha256="0mv3xfy847lqh95mpccjiw5jjbml7dwrna7i16532sdqcxaq4m02"; depends=[]; }; @@ -3869,16 +3764,13 @@ in with self; { QuClu = derive2 { name="QuClu"; version="0.1.0"; sha256="0a2malh9vz5jcjgdx4d98k0c61vz3ip8ynqh5i85x8hzcby11qgj"; depends=[]; }; QuESTr = derive2 { name="QuESTr"; version="0.1.1"; sha256="1vvvraqgy570dj86km4qpiax4a0zhfym94am0fn6ld43p3iixg02"; depends=[ggplot2 kernlab]; }; QuadRoot = derive2 { name="QuadRoot"; version="0.2.0"; sha256="0p6d8s3qrynaky3xv7srh7qrpm6b0xrlq70m8gqsfddlgrvxl668"; depends=[]; }; - QualInt = derive2 { name="QualInt"; version="1.0.0"; sha256="1ms96m3nz54848gm9kdcydnk5kn2i8p1rgl2dwn7cqcqblfvsr4j"; depends=[ggplot2 survival]; }; Quandl = derive2 { name="Quandl"; version="2.11.0"; sha256="1bsba6blbcq0my8wm0qcy0qabbgx344gjljnjwaqfrqkjcphf5xs"; depends=[httr jsonlite xts zoo]; }; QuantNorm = derive2 { name="QuantNorm"; version="1.0.5"; sha256="1hds9ybwsgnmcpa22vlmgdq02ilhn0c6a7z1qjiq4i5iqjd4gwf6"; depends=[]; }; - QuantTools = derive2 { name="QuantTools"; version="0.5.7.1"; sha256="1nkf7ihzfwgz7svh1jybgcvqwbim2dqzi00l4m9pma463va4q19d"; depends=[data_table fasttime R6 Rcpp RCurl readxl]; }; - QuantileGH = derive2 { name="QuantileGH"; version="0.1.1"; sha256="0ah1l5zzlsda2s6x0i4rcln8smg52jwpxcaf52zfarfbw30a88jp"; depends=[ggplot2 goftest LaplacesDemon rstpm2 scales tclust]; }; + QuantileGH = derive2 { name="QuantileGH"; version="0.1.2"; sha256="0w7dk0a2zb3va3sz75alg2llk7vv4dfziniwwayijgv3qq017jx9"; depends=[ggplot2 goftest LaplacesDemon latex2exp mixtools rstpm2 scales tclust]; }; QuantileGradeR = derive2 { name="QuantileGradeR"; version="0.1.1"; sha256="1zwc6bg636gk8zll7wpznd3pzl611hcj2fmzp8b9505rra13p0g2"; depends=[]; }; QuantileNPCI = derive2 { name="QuantileNPCI"; version="0.9.0"; sha256="043lkg1pyaja7a4f9lmcwrvdjpfly2z378s15snwnxj8vb5pgr38"; depends=[]; }; QuantumOps = derive2 { name="QuantumOps"; version="3.0.1"; sha256="0gl1myf7q444imyvsjvxiaxaahf0n0bsggwbd0z3az73l6yf1gjh"; depends=[]; }; - Quartet = derive2 { name="Quartet"; version="1.2.2"; sha256="0yb4i55zvgn3al01qvr78v9psvn7b1x1fz69mmy3i010lqbyyjnq"; depends=[ape Rcpp Rdpack Ternary TreeTools viridisLite]; }; - QuasiSeq = derive2 { name="QuasiSeq"; version="1.0-10-2"; sha256="1mr43vys9l1n859lzlcakjrvjllybgrwl0p8mc28h7m87yjkj670"; depends=[edgeR mgcv pracma]; }; + Quartet = derive2 { name="Quartet"; version="1.2.4"; sha256="08x73w9zyakyybrdv31vx92sdiq6swy9xk07vqzshd01pnln5f2m"; depends=[ape Rcpp Rdpack Ternary TreeTools viridisLite]; }; R_SamBada = derive2 { name="R.SamBada"; version="0.1.3"; sha256="020f7fy0w6hy3gh5i8icny7gdgz6g29zr26b6pjglq0nsyxk8wc0"; depends=[gdsfmt SNPRelate]; }; R_cache = derive2 { name="R.cache"; version="0.15.0"; sha256="09pipn1974ivjh4sm3n5fjlh31rilf87p30qwq7y25vriyqd7d5d"; depends=[digest R_methodsS3 R_oo R_utils]; }; R_devices = derive2 { name="R.devices"; version="2.17.0"; sha256="1djz6vm1b7sjvx1q319dl47gbnz9kvipaxcz9i0spyp094lv3m62"; depends=[base64enc R_methodsS3 R_oo R_utils]; }; @@ -3891,12 +3783,10 @@ in with self; { R_temis = derive2 { name="R.temis"; version="0.1.3"; sha256="1qa381fv1hxd1fv9d22772aibiia6m2ycm69znjy3ah2w986hjfh"; depends=[crayon explor FactoMineR igraph NLP slam SnowballC stringi testthat tm tm_plugin_alceste tm_plugin_europresse tm_plugin_factiva tm_plugin_lexisnexis wordcloud]; }; R_utils = derive2 { name="R.utils"; version="2.11.0"; sha256="1n7y4dzls7dc8fdkm9zncq4cpiblb2a9vwirwjkf72zpjpwn0a32"; depends=[R_methodsS3 R_oo]; }; R0 = derive2 { name="R0"; version="1.2-6"; sha256="1yvcgchxlj7hkgqkw6g8pxnracxkld1grgykkcr6wbhminbylqv8"; depends=[MASS]; }; - R1magic = derive2 { name="R1magic"; version="0.3.2"; sha256="1xfldr5y7pfdi6qljjvckknsv2wi9rnzwmqxkpgnyc96md2fvwjr"; depends=[]; }; - R2019nCoV = derive2 { name="R2019nCoV"; version="0.1.0"; sha256="1959mwacn0zzq0g5ili2v6aqs51rb6qvlsv16xx7qwml8xahf215"; depends=[dplyr ggplot2 jsonlite maps pinyin]; }; + R1magic = derive2 { name="R1magic"; version="0.3.3"; sha256="0klfaab1abfq662p5c93h6y222nqphhq6m65hdjms04gl44bk3ww"; depends=[]; }; R2Addhaz = derive2 { name="R2Addhaz"; version="0.1.0"; sha256="1xaqbzq2chsgkg1gc163fq8qcgzq9wwn2bm4mwvc31ay0gg4f3xi"; depends=[ahaz caTools pracma Rdpack survival zoo]; }; R2BEAT = derive2 { name="R2BEAT"; version="1.0.4"; sha256="048x0qvz2w58pby1pz4r1zdbq2v72mrrgaydva6ar0vjps0c2y5s"; depends=[devtools glue sampling]; }; R2BayesX = derive2 { name="R2BayesX"; version="1.1-1.1"; sha256="1xa6df4188xvwg70w5adhflzn93i5hn99snyswmch5icinxdkxlg"; depends=[BayesXsrc colorspace mgcv]; }; - R2DGC = derive2 { name="R2DGC"; version="1.0.3"; sha256="0f84fmpf3m2s2p6bllvjs8rgnhwjy54adblv02dq8gakwvb4j2aw"; depends=[]; }; R2DT = derive2 { name="R2DT"; version="0.2"; sha256="0hyisq6mij80v14sjspn9idd1h38sd1knbpd0dn2wy9k2w1fl0pk"; depends=[data_table devFunc plyr]; }; R2HTML = derive2 { name="R2HTML"; version="2.3.2"; sha256="00kxny7hajs9r2kw63qk7d03ggdxx2j1g8vbrmzp806y8aczvik9"; depends=[]; }; R2MLwiN = derive2 { name="R2MLwiN"; version="0.8-7"; sha256="1r12b0gy5747acn0jyf3n2f210a51pgl6vkk1rd4fbbj0dk5bwmf"; depends=[broom coda digest doParallel foreach foreign lattice Matrix memisc R2WinBUGS texreg tibble]; }; @@ -3905,7 +3795,6 @@ in with self; { R2WinBUGS = derive2 { name="R2WinBUGS"; version="2.1-21"; sha256="0k8k214x712vjj2k1am4zzf6scccs3b98ysiz4lwxpzm818wp1ps"; depends=[boot coda]; }; R2admb = derive2 { name="R2admb"; version="0.7.16.2"; sha256="1gwp850ff76lqqn6amj75rjqb1szk6x2vlhqgwng4z45i56bmdf7"; depends=[coda lattice]; }; R2jags = derive2 { name="R2jags"; version="0.7-1"; sha256="0si2f0lmnpjcsmy54k51kwj1fkx24dshiidv46h8j2xjq1hp429v"; depends=[abind coda R2WinBUGS rjags]; }; - R2ucare = derive2 { name="R2ucare"; version="1.0.0"; sha256="1nh2wf3syxjz9flxhf8x9fd2c2ndn4dha4k34lz1nq5j4qz7wfp1"; depends=[RMark stringr]; }; R330 = derive2 { name="R330"; version="1.0"; sha256="01sprsg7kph62abhymm8zfqr9bd6dhihrfxzgr4pzi5wj3h80bjm"; depends=[lattice leaps rgl s20x]; }; R3port = derive2 { name="R3port"; version="0.2.4"; sha256="0h1n5v1hkdqbars8xsid208wkr8jw9gwx5j2gprfl58fh0d2rc94"; depends=[plyr reshape2 tinytex whisker]; }; R4CouchDB = derive2 { name="R4CouchDB"; version="0.7.5"; sha256="1wd1yqbs8m4zqvdm6x7mrcyk5b5pr4azm3r49nrilg8fnr2bk9rz"; depends=[bitops RCurl RJSONIO]; }; @@ -3916,14 +3805,12 @@ in with self; { R6causal = derive2 { name="R6causal"; version="0.6.0"; sha256="07af19pfblp07102b9q4kvw4q1byd79m06pbj17jszl27ski4hqb"; depends=[causaleffect data_table dosearch igraph R6]; }; RABR = derive2 { name="RABR"; version="0.1.0"; sha256="0kaprgc4nj5gizjdjjf9iiqyyp92qc18083ascs0swv1xzfp6vs0"; depends=[asd cubature data_table doParallel foreach ggplot2 multcomp multxpert survival]; }; RAC = derive2 { name="RAC"; version="1.5"; sha256="0q0kk9j3blrnhv0rfmryc35lli5j4kds2vmjdpg77znagb45609k"; depends=[maps maptools matrixStats ncdf4 plotrix raster rgdal rgeos rstudioapi sp]; }; - RAD = derive2 { name="RAD"; version="0.3"; sha256="0nmgsaykxavq2bskq5x0jvsxzsf4w2gqc0z80a59376li4vs9lpj"; depends=[MASS mvtnorm]; }; RADanalysis = derive2 { name="RADanalysis"; version="0.5.5"; sha256="1py07p24i1pky8wwyy8ajmkg6h2n7nbpxp1w6lrkiyl0p2kgjm20"; depends=[scales sfsmisc]; }; RADstackshelpR = derive2 { name="RADstackshelpR"; version="0.1.0"; sha256="0j2vazbji8xqb8xkd9jrpi10iqj30rvkdjfs4snavl9nsbra99yf"; depends=[ggplot2 ggridges gridExtra vcfR]; }; RAEN = derive2 { name="RAEN"; version="0.2"; sha256="098d990qa987hx2llqwdw2bmi5nmrlda23j1rgmw5nirllk28d30"; depends=[boot doParallel fastcmprsk foreach glmnet lars]; }; RAINBOWR = derive2 { name="RAINBOWR"; version="0.1.29"; sha256="0g82wi0bffkkb86axsa814dbqhscs9mlgk43j3j375v9kbd4136c"; depends=[ape cluster expm gaston here htmlwidgets MASS Matrix MM4LMM optimx pbmcapply pegas Rcpp RcppEigen Rfast rrBLUP stringr]; }; - RALSA = derive2 { name="RALSA"; version="1.1.5"; sha256="179klpj9birrzks42xixq0jk1mvv6yjshwhk6q7qsixhldvaaiwp"; depends=[data_table DT foreign Hmisc openxlsx readr shiny shinydashboard shinyFiles shinyjs stringi stringr]; }; - RAM = derive2 { name="RAM"; version="1.2.1.7"; sha256="0aalswivpjs1glwf4yh3b79lch3n32fyj5xda55h3v7gzs7p0d7f"; depends=[ade4 ape data_table FD ggmap ggplot2 gplots gridExtra labdsv lattice MASS permute phangorn phytools plyr RColorBrewer reshape reshape2 RgoogleMaps scales vegan VennDiagram]; }; - RAMClustR = derive2 { name="RAMClustR"; version="1.2.3"; sha256="09s8n9jih38psrdajxllni75lr56lkzyvgkadinys2dcq6f9rh4x"; depends=[BiocManager dynamicTreeCut e1071 fastcluster ff ggplot2 gplots httr InterpretMSSpectrum jsonlite pcaMethods preprocessCore RCurl readxl stringi stringr webchem xml2]; }; + RALSA = derive2 { name="RALSA"; version="1.2.0"; sha256="1m81kqgjdhf562kk6zbps87f213cv01c460krh5i7x3q7i6wjb9r"; depends=[data_table DT foreign ggplot2 Hmisc openxlsx readr shiny shinydashboard shinyFiles shinyjs stringi stringr]; }; + RAMClustR = derive2 { name="RAMClustR"; version="1.2.4"; sha256="11k106472wds10bvp7j2fr9vdzyvzfqndpvh2l5q5y9g25w0rpps"; depends=[dynamicTreeCut e1071 fastcluster ff ggplot2 gplots httr jsonlite pcaMethods preprocessCore RCurl readxl stringr webchem]; }; RAMP = derive2 { name="RAMP"; version="2.0.2"; sha256="0836fiycrsxiwdw7srz1rvsf639iqh2rk89gavx4kvn0i0sc8d2x"; depends=[]; }; RAMpath = derive2 { name="RAMpath"; version="0.4"; sha256="0blixfmgiq22hd356hrp4vbhfkkgh0a58143nhirjx3sav9pxc1v"; depends=[ellipse lavaan MASS]; }; RANKS = derive2 { name="RANKS"; version="1.0"; sha256="1lvaya9jlqrr9klqznw4fz5h5x0sw191ci74hpymb4gzhhxcbp27"; depends=[graph limma NetPreProc PerfMeas RBGL]; }; @@ -3944,11 +3831,10 @@ in with self; { RBPcurve = derive2 { name="RBPcurve"; version="1.2"; sha256="0zkfvnhm780vid4qqdrx9mnc6jxxrmrnq47pqvk35rm3m4l96782"; depends=[BBmisc checkmate mlr shape TeachingDemos]; }; RBaseX = derive2 { name="RBaseX"; version="1.1.1"; sha256="03p0c89pcx3inxa4qlyhvf3hm48rfp5j46b0qkszm96yf3g2b01m"; depends=[data_table dplyr httr magrittr openssl pingr R6 RCurl rex stringr tibble]; }; RBesT = derive2 { name="RBesT"; version="1.6-3"; sha256="0nbqkxsi6di4sd26l9c212sjs2lsvnabwbnf0cx00hmxrxzy0lhl"; depends=[assertthat bayesplot BH checkmate dplyr Formula ggplot2 mvtnorm Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; - RBitmoji = derive2 { name="RBitmoji"; version="0.0.2"; sha256="1v9qj3vmqsvnccsy735nbflmd81183h2flm0f1ckd4kl08r2fr3f"; depends=[getPass httr jsonlite png RCurl]; }; RBtest = derive2 { name="RBtest"; version="1.1"; sha256="09da721zfj6cw4i9gifn5f0sv3nj0qfjb96c5w9g9gzx55ihssnk"; depends=[mice nnet psych]; }; RCA = derive2 { name="RCA"; version="2.0"; sha256="0pidb5czrf0dc3ywy6cwm5akgsc62pvf94kfyxibzmd1favykx1h"; depends=[gplots igraph]; }; RCAL = derive2 { name="RCAL"; version="2.0"; sha256="1k58im8dclyaqqcqm6v9618rlh8jkp74j7ly2lvqfb9jm0wgkx8h"; depends=[trust]; }; - RCALI = derive2 { name="RCALI"; version="0.3.1"; sha256="0hc7h55qi8bpmp9rfh1wgxqs28kbs4yqxch2jlgl42vk5383askq"; depends=[splancs]; }; + RCALI = derive2 { name="RCALI"; version="0.3.2"; sha256="0d5saz5pca8pb9zsl8xc8xwpd0cdbcw8vvd4grbv60sqxk644p8b"; depends=[splancs]; }; RCBR = derive2 { name="RCBR"; version="0.5.9"; sha256="1nxaf485jfg1kr80bxwczf27xz5ab7yz61c5l3bg9192jdf432ql"; depends=[Formula Matrix mvtnorm orthopolynom REBayes Rmosek]; }; RCCPCA = derive2 { name="RCCPCA"; version="0.1.0"; sha256="0nix6d8cxi64qfnsk00rpzq9kf07a5skc8zkvywl2y2aw6wrlvnd"; depends=[]; }; RCDT = derive2 { name="RCDT"; version="1.1.0"; sha256="1mi8asqvna3aw6ndpg73kb70h5pfn9yrj9al1ydz0p32x8qm3rfh"; depends=[gplots randomcoloR Rcpp RcppArmadillo rgl Rvcg]; }; @@ -3960,7 +3846,7 @@ in with self; { RCPmod = derive2 { name="RCPmod"; version="2.190"; sha256="1r24g8fcizyqzgp0da90sxpwalgcsgz2b168j2smpylxraiqb037"; depends=[fishMod glmnet gtools MASS]; }; RCRnorm = derive2 { name="RCRnorm"; version="0.0.2"; sha256="1mz1jb7mc9c47hbk9flnddny4zir6r2k5qis30iynwqny521l6ln"; depends=[truncnorm]; }; RCSF = derive2 { name="RCSF"; version="1.0.2"; sha256="1hjl7qsdgcddn3nh2likndhfhnw9gj3453xqq96gddgb1y0m3bh1"; depends=[Rcpp]; }; - RCT = derive2 { name="RCT"; version="1.1.1"; sha256="01ir440zgxjvzwn5vazxib0w14nqy7lk7glwvba39xqghb3xw85z"; depends=[broom dplyr forcats ggplot2 glue lfe magrittr MASS pracma purrr rlang stringr tidyr tidyselect]; }; + RCT = derive2 { name="RCT"; version="1.1.2"; sha256="1cx39nnq50xjj5f1v8jvcia3j761qbi3w5gcyrax8daz7nlqsdxm"; depends=[broom dplyr forcats ggplot2 glue lfe magrittr MASS pracma purrr rlang stringr tidyr tidyselect]; }; RCarb = derive2 { name="RCarb"; version="0.1.5"; sha256="1ww10kzc6lhhfsipfdf005ic2wf6kmr5dyahsj4bi2jp2fbh2g0m"; depends=[interp matrixStats]; }; RCassandra = derive2 { name="RCassandra"; version="0.1-3"; sha256="0xa241s81cyw6lfjb522f2mlyrd0gav9yz3z5jab9hpdpgg9ri38"; depends=[]; }; RChest = derive2 { name="RChest"; version="1.0.3"; sha256="112y6g1lyk3wky825g77sy49wgqs8vqdi90lrp0qza6cqjg381mq"; depends=[Rdpack reticulate]; }; @@ -3975,7 +3861,7 @@ in with self; { RCriteo = derive2 { name="RCriteo"; version="1.0.2"; sha256="1vyhnblw9zr5h6c25lf76p9vn95k8vr0hpq1sjkccdwl9yvsyhfy"; depends=[httr plyr RCurl XML]; }; RCurl = derive2 { name="RCurl"; version="1.98-1.6"; sha256="18nif4phr5vfhri07mnchiym0qfm31ak9nxvb2v9ac84mij6idbc"; depends=[bitops]; }; RCytoGPS = derive2 { name="RCytoGPS"; version="1.2.1"; sha256="1ppxyrm9h09kk6lnr6yg3n3xl08l9zp4rqliz92k5h42hmgj6f02"; depends=[rjson]; }; - RCzechia = derive2 { name="RCzechia"; version="1.9.1"; sha256="1xwzbbap6h02z7jpzrgh0lmrzxssdjh0gr8fk0ivnl8zgfqrfk86"; depends=[curl httr jsonlite magrittr sf]; }; + RCzechia = derive2 { name="RCzechia"; version="1.9.2"; sha256="1lj573iil66k06arfw3lrlbhp0c0xdl67f9klbnk2v6rxrjd5hx4"; depends=[curl httr jsonlite magrittr sf]; }; RDIDQ = derive2 { name="RDIDQ"; version="1.0"; sha256="09gincmxv20srh4h82ld1ifwncaibic9b30i56zhy0w35353pxm2"; depends=[]; }; RDML = derive2 { name="RDML"; version="1.0"; sha256="13ly1p42njbcygwvkyii8sjqbsywjy5w5g1kd7m8kswi5dsk3qqv"; depends=[checkmate data_table lubridate pipeR R6 readxl rlist stringr xml2]; }; RDP = derive2 { name="RDP"; version="0.2.3"; sha256="0fmssv33lxfxk61609dd7865n9w7i6wlap9g5aaa2b0319sbclpd"; depends=[Rcpp]; }; @@ -3998,13 +3884,12 @@ in with self; { REPPlab = derive2 { name="REPPlab"; version="0.9.4"; sha256="1pf8zrjdzziyq2lw31p1ij7cn4j7pf659ygxv8wpfnmcmpaqbc45"; depends=[lattice LDRTools rJava]; }; REPPlabShiny = derive2 { name="REPPlabShiny"; version="0.4.1"; sha256="0wim27jm01xbi316jfz5j30sid7z1wsznhrpmxrbd97d4312449w"; depends=[DT REPPlab shiny]; }; REPTILE = derive2 { name="REPTILE"; version="1.0"; sha256="11swy4jrmmb0xjjxm1wyxd628fxxcqnialvijdrjwjpdbvraz4gq"; depends=[doParallel flux foreach optparse randomForest]; }; - REQS = derive2 { name="REQS"; version="0.8-12"; sha256="049glqhc8h8gf425kmj92jv70917dsigpm37diby0c6hb4jrg8ka"; depends=[gtools]; }; REREFACT = derive2 { name="REREFACT"; version="1.0"; sha256="0nggva4qfqlcs58df3sgiigw0z75l5kg8c1yh0k5qsvjnhiq19vn"; depends=[combinat gdata Matrix psych]; }; RESS = derive2 { name="RESS"; version="1.3"; sha256="1vddmifp47ia0sk35rnjpvw6gr9ygygafqczq268h17i1qs6ar22"; depends=[]; }; REST = derive2 { name="REST"; version="1.0.1"; sha256="16v89z7p9qkg7bsypf9vkrnbmb2n7gw3fqnfzbyxwj496wzxdv1x"; depends=[Rcmdr]; }; REddyProc = derive2 { name="REddyProc"; version="1.3.2"; sha256="1irclh991wp1ns2wb9dd88kqd5vg1kd8vk83a7w0kjpf20yqnkvp"; depends=[bigleaf dplyr magrittr purrr Rcpp readr rlang solartime tibble]; }; REddyProcNCDF = derive2 { name="REddyProcNCDF"; version="1.1.4"; sha256="099f4mzqj7pjlrs8rdjg44mjm0058x3pj2imrfvk892hmlk4r53p"; depends=[REddyProc]; }; - REndo = derive2 { name="REndo"; version="2.4.3"; sha256="1h7ycxwklb9dbb8q0g9cagjl93jhbjc86l25s1imdp1rqfsv8i6c"; depends=[AER corpcor data_table Formula lme4 lmtest Matrix mvtnorm optimx Rcpp RcppEigen]; }; + RFCCA = derive2 { name="RFCCA"; version="1.0.9"; sha256="15zabdqkgji58yxh3nndaj8ipap8av353d0cvx54y2gx7cxlmdf3"; depends=[CCA PMA]; }; RFGLS = derive2 { name="RFGLS"; version="1.1"; sha256="13ggxj74h5b2hfhjyc50ndxznkvlg18j80m78hkzwh25d3948fsk"; depends=[bdsmatrix Matrix]; }; RFLPtools = derive2 { name="RFLPtools"; version="2.0"; sha256="07hw0hyyxqy31qakkb410gb3i0g5jvpmigv5cqhxqss2cwzpch0d"; depends=[RColorBrewer]; }; RFOC = derive2 { name="RFOC"; version="3.4-6"; sha256="0cs5wmpvrlag9aisbfiwkvwcb3skv5z4sawl30krmsq49mzj7yhd"; depends=[GEOmap MASS RPMG RSEIS splancs]; }; @@ -4014,9 +3899,7 @@ in with self; { RFormatter = derive2 { name="RFormatter"; version="0.1.1"; sha256="0jmzdc2cl4vvffsyfwp493fiygh9xinhv970qxp1667rw8wlap8l"; depends=[formatR]; }; RFpredInterval = derive2 { name="RFpredInterval"; version="1.0.5"; sha256="1ri62dfgwsbgrvjx7qn4mbv1p0mk2ynkrnw9s1klv31p2431rli5"; depends=[data_table data_tree DiagrammeR hdrcde ranger]; }; RFreak = derive2 { name="RFreak"; version="0.3-0"; sha256="1dmllxb6yjkfkn34f07j2g7w5m63b5d10lh9xsmxyfk23b8l3x0x"; depends=[rJava]; }; - RGA = derive2 { name="RGA"; version="0.4.2"; sha256="0pjizgvrh0gbjlyxlb3v93nhigg8rpq3mziv1qlp6r0s5y7cmpi9"; depends=[httr jsonlite lubridate plyr]; }; RGAN = derive2 { name="RGAN"; version="0.1.1"; sha256="0820fvmiw853hfls7mydca9lhwxrrkj49vshp151by9mavwkx413"; depends=[cli torch viridis]; }; - RGBM = derive2 { name="RGBM"; version="1.0-8"; sha256="0xd64g07y808nzs4zvbx6bxdpbj2ndqg6yzc3p0l43pxm4hyxva0"; depends=[doParallel foreach plyr]; }; RGCCA = derive2 { name="RGCCA"; version="2.1.2"; sha256="0zcxakqnmih0243y5b6r9nmcfanzxd6q344pd5bca5pnm3y43wr0"; depends=[Deriv MASS]; }; RGE = derive2 { name="RGE"; version="1.0"; sha256="1ild1if10xicfapfcmydz1cgvn5fyydrik8qclb90i95bl9bs4ia"; depends=[coda Matrix MatrixModels]; }; RGENERATE = derive2 { name="RGENERATE"; version="1.3.7"; sha256="0w6hqrf2lr6qz79skml2vjpfwfv5vxj94rghxxa3rp9dqzhi7rc0"; depends=[magrittr RMAWGEN]; }; @@ -4041,13 +3924,13 @@ in with self; { RHRV = derive2 { name="RHRV"; version="4.2.6"; sha256="1rdfq1xnimli709waypwhw1v277hxhmiy7ziizgqi4522nip4h49"; depends=[lomb nonlinearTseries waveslim]; }; RHSDB = derive2 { name="RHSDB"; version="0.1.0"; sha256="1vhx5q19pi91283d20cc7950f01cqq8frbmxaf9kvxbv6pijhdk9"; depends=[]; }; RHT = derive2 { name="RHT"; version="1.0"; sha256="1gxf8nhj3y92h8al7l3fxa45wc568kb3cykrbdjlsy2zjacf7fcc"; depends=[]; }; - RHawkes = derive2 { name="RHawkes"; version="0.0"; sha256="0qi32f6im6fsgvjs8bravc5z21557zn2d0a7i88dy0rri7czm5p7"; depends=[IHSEP]; }; + RHawkes = derive2 { name="RHawkes"; version="1.0"; sha256="1ishfdbyk9g6lh5q6apbaw7vh9cfwyykag27imrfpx3c40sbwmd4"; depends=[IHSEP]; }; RHclust = derive2 { name="RHclust"; version="1.0.0"; sha256="159cwlz1h8jvm96mkx4s68q6mqhpiykf23b4bhpxx9vk0qxpyl89"; depends=[Runuran]; }; RHybridFinder = derive2 { name="RHybridFinder"; version="0.2.0"; sha256="0g8kvzir8kfgg3ifww164lbqhsi2yw3dp80r68g36vxfzy11y230"; depends=[doParallel foreach seqinr]; }; RI2by2 = derive2 { name="RI2by2"; version="1.3"; sha256="0smc0fb9anq5ih9zx2slfbqyx02njm0hc7g22gpfggskmxf2l509"; depends=[gtools Rcpp]; }; RIA = derive2 { name="RIA"; version="1.6.0"; sha256="0vj92plwmklb0i9h6zr18dnfwi3p7wkajjjxg0vfvm4pps9pkfwp"; depends=[nat oro_dicom oro_nifti reticulate]; }; - RIFS = derive2 { name="RIFS"; version="0.1-5"; sha256="0705dhirh7bhy2yf3b1mpk3m7lggg4pwy640lvaspwaxkd6zac5w"; depends=[]; }; - RISCA = derive2 { name="RISCA"; version="0.9"; sha256="0fq474xv8dcj548wm3dydz70cgvmgrz3h8q1mlzyrxbbwrvzx8wm"; depends=[caret date doParallel foreach glmnet kernlab MASS mvtnorm nlme nnet relsurv statmod SuperLearner survival]; }; + RIFS = derive2 { name="RIFS"; version="0.1.6"; sha256="0cbz2vg8adqjkbn9r8cikqxlzhk01ba3nlnh8rqbwdcpiz90l1ip"; depends=[]; }; + RISCA = derive2 { name="RISCA"; version="1.0.1"; sha256="1r58s8ss64l7pckc5k2sqdsnp4kq2aagclbj5dxw6662y159m84d"; depends=[caret cubature date doParallel dplyr dvmisc flexsurv foreach glmnet glmnetUtils hdnom kernlab MASS mosaic mosaicCalc mvtnorm nlme nnet prodlim randomForestSRC relsurv reticulate rpart statmod SuperLearner survival survivalmodels timeROC zoo]; }; RISmed = derive2 { name="RISmed"; version="2.3.0"; sha256="0vpi88gzi9r85v6nhjz9jbw671zkrmyazwna2z881346wfyr3l8b"; depends=[httr xml2]; }; RIdeogram = derive2 { name="RIdeogram"; version="0.2.2"; sha256="0wvzlnisnxwzdzfh8ph4yspr8abi5qk6p4z2qa14ykzn8yry61ni"; depends=[ggplot2 grImport2 rsvg scales tidyr]; }; RImageJROI = derive2 { name="RImageJROI"; version="0.1.2"; sha256="1rsc8iv80zyjzpj80yyyhndxvskdbldsfc2gskrr1r8yh5gmhn23"; depends=[spatstat spatstat_geom]; }; @@ -4085,15 +3968,16 @@ in with self; { RMAWGEN = derive2 { name="RMAWGEN"; version="1.3.7"; sha256="10hgssy59fcjbv333grpf6f3m7924hav66xxqhdlsdnwix19q7sb"; depends=[chron date vars]; }; RMBC = derive2 { name="RMBC"; version="0.1.0"; sha256="1fqbr28d09j01rmr9gylzkpvrd6bc9rnjbyzv06hmlx5mmjmzkb4"; depends=[ktaucenters MASS mvtnorm]; }; RMCC = derive2 { name="RMCC"; version="0.1.0"; sha256="12ksv4yms1pgk7yj40yjmbc5rz1ai1mn8xd3a4w2pdx0mwjin6sz"; depends=[BH Rcpp]; }; - RMKdiscrete = derive2 { name="RMKdiscrete"; version="0.1"; sha256="0b4adw46sn98qmy4nxv5l5svcjrp5532x7slfhhgsskqx408lzjf"; depends=[]; }; + RMKdiscrete = derive2 { name="RMKdiscrete"; version="0.2"; sha256="0zlaq0y463pnhaiw232vp6n77wgz0zih4x9gcggd9bzgm8z1hwj7"; depends=[]; }; RMLPCA = derive2 { name="RMLPCA"; version="0.0.1"; sha256="1xzh6fwl71dzdpbqgpkqnmdzdk8rblg6n1ddic5yxxfvzg3bh13x"; depends=[Matrix pracma RSpectra]; }; + RMM = derive2 { name="RMM"; version="0.1.0"; sha256="01qkcsybjgwx6gkww3hjmd4gqv20zkxbnwygn6wnim3clxrxphil"; depends=[dplyr magrittr numDeriv Rcpp rlang tibble]; }; RMOA = derive2 { name="RMOA"; version="1.0.2"; sha256="16j01m9drrhxr1vv5lwg3x42jc0ivbm3p2pkjhmsv6m6a87hhggl"; depends=[rJava RMOAjars]; }; RMOAjars = derive2 { name="RMOAjars"; version="1.0.1"; sha256="0qzpwsbndn8fw9560z9h9w9ff9bx6xj7mr50683q1n3dpn5z637i"; depends=[rJava]; }; RMPSH = derive2 { name="RMPSH"; version="1.1.1"; sha256="0jffp8942ydwain23kvy7q6avpxxsb77jj1mg4bq43fwgfc9nqjy"; depends=[Rcpp]; }; RMSNumpress = derive2 { name="RMSNumpress"; version="1.0.1"; sha256="1y86dpa8kpq2bkvl90qwghxrnll5h3y9ycyvmamm4kd7ivy59sxi"; depends=[Rcpp]; }; - RMTL = derive2 { name="RMTL"; version="0.9"; sha256="08da67wvzmibziqhnlzh43sydaihk4rsq2k5hs6ih3jkkidrhlgv"; depends=[corpcor doParallel foreach MASS psych]; }; + RMTL = derive2 { name="RMTL"; version="0.9.9"; sha256="1wyv9l1xgdm4s8ibjw3kwfsr77hxkxj80cgvkfv4mdir0bxm84b4"; depends=[corpcor doParallel foreach MASS psych]; }; RMThreshold = derive2 { name="RMThreshold"; version="1.1"; sha256="0wkc42vcggib002ad6ch43h6avpdgl12szrrrfd2p0wl72cwn5n1"; depends=[Matrix png]; }; - RMTstat = derive2 { name="RMTstat"; version="0.3"; sha256="1nn25q4kmh9kj975sxkrpa97vh5irqrlqhwsfinbck6h6ia4rsw1"; depends=[]; }; + RMTstat = derive2 { name="RMTstat"; version="0.3.1"; sha256="1r1a2sdqv64m9cpm2pz6r8abf7l810126ayd8iq3gx86c7bjfj5v"; depends=[]; }; RMVL = derive2 { name="RMVL"; version="0.0.4.4"; sha256="01w649iw62kpyp4a3lyrqcfb8iqcd0v8zwz6aq1cnxhw04hz0c1w"; depends=[]; }; RMaCzek = derive2 { name="RMaCzek"; version="1.4"; sha256="0qyragblpsc5pw9j0n4563i29fgi7jmv696lk2dp8ms6sba6ns6y"; depends=[GA seriation]; }; RMallow = derive2 { name="RMallow"; version="1.1"; sha256="1s6a3347739rfc8rrh2773b278gcbp8hf5j5psm61fz7bavy9gcj"; depends=[combinat]; }; @@ -4106,7 +3990,7 @@ in with self; { RMixtCompUtilities = derive2 { name="RMixtCompUtilities"; version="4.1.4"; sha256="1rhdmiap7xm96igclas67dz8naywjkddydbk9m3hp0d0zhgblc5i"; depends=[ggplot2 plotly scales]; }; RMySQL = derive2 { name="RMySQL"; version="0.10.23"; sha256="05aavyggyjv46awa7ggbxlfcy9707vak5kh7kj0ljdx8zga7xb7l"; depends=[DBI]; }; RNAseqNet = derive2 { name="RNAseqNet"; version="0.1.4"; sha256="16ab0p0378j4vvcazynffsgx1rq32llf1sz4h4pp5lrx820j6qvx"; depends=[ggplot2 glmnet hot_deck igraph PoiClaClu]; }; - RNAseqQC = derive2 { name="RNAseqQC"; version="0.1.1"; sha256="1w867y34mxqwnl5svb1i2f07grprvpqijgjf964p2n9l952qsv3p"; depends=[AnnotationFilter AnnotationHub circlize ComplexHeatmap cowplot DESeq2 dplyr ensembldb gghighlight ggplot2 ggpointdensity ggrepel ggsci magrittr matrixStats purrr RColorBrewer stringr SummarizedExperiment tibble tidyr tidyselect vsn]; }; + RNAseqQC = derive2 { name="RNAseqQC"; version="0.1.2"; sha256="0q4gjn1m1qm5w8my4l7asyj37sfb17hj12fnrnahw9fv69psw2ga"; depends=[AnnotationFilter AnnotationHub circlize ComplexHeatmap cowplot DESeq2 dplyr ensembldb gghighlight ggplot2 ggpointdensity ggrepel ggsci magrittr matrixStats purrr RColorBrewer stringr SummarizedExperiment tibble tidyr tidyselect vsn]; }; RNAsmc = derive2 { name="RNAsmc"; version="0.7.0"; sha256="13biayrgs9qb06w3rkwrmplnrm93zlygsfm7chy6jbp15xl3bf0c"; depends=[circlize RRNA]; }; RNCBIEUtilsLibs = derive2 { name="RNCBIEUtilsLibs"; version="0.9"; sha256="1h1ywx8wxy6n2rbpmjbqw4c0djz29pbncisd0mlbshj1fw226jba"; depends=[rJava]; }; RNCEP = derive2 { name="RNCEP"; version="1.0.10"; sha256="19ja7pcp7ajwhqhqw92pdmvxzyjc4kw3943pllpx47s1zvi6dmci"; depends=[abind fields maps RColorBrewer sp tgp]; }; @@ -4115,8 +3999,8 @@ in with self; { RNHANES = derive2 { name="RNHANES"; version="1.1.0"; sha256="045ykpgxvc22blbp47ysbk6a6x4akjd39pjr114cr23s7f48g6h4"; depends=[dplyr foreign rvest survey xml2]; }; RNOmni = derive2 { name="RNOmni"; version="1.0.0"; sha256="1zn0yswycvzc3bm5rd7n84b2jbb5rdl66m4x5miz9pv7h6wsckkv"; depends=[plyr Rcpp RcppArmadillo]; }; RNaviCell = derive2 { name="RNaviCell"; version="0.2"; sha256="15k8hkagn5520fy7x672fy329s2v7l0x44s44f6v7ql9mmg4b635"; depends=[RCurl RJSONIO]; }; - RNeXML = derive2 { name="RNeXML"; version="2.4.6"; sha256="0k56brcg80mvx35hgc5gj8arwba4k7q0075g38qp0qgq9d1b87cs"; depends=[ape dplyr httr lazyeval plyr reshape2 rlang stringi stringr tidyr uuid XML xml2]; }; - RNentropy = derive2 { name="RNentropy"; version="1.2.2"; sha256="0chvmrvpyyghilwb63y6pd1zp94i5qhpv5w19x9nw0ypk86pp2dj"; depends=[]; }; + RNeXML = derive2 { name="RNeXML"; version="2.4.7"; sha256="1zp6pijsc73jx8cmxb1hng36nvaf5wnhldnzlqhmba9kv9niscfb"; depends=[ape dplyr httr lazyeval plyr reshape2 rlang stringi stringr tidyr uuid XML xml2]; }; + RNentropy = derive2 { name="RNentropy"; version="1.2.3"; sha256="1kflx1i01ddq803i0vj79zfjs9y0sl8dzra9j5x84m6wcjbn71kl"; depends=[]; }; RNetCDF = derive2 { name="RNetCDF"; version="2.5-2"; sha256="0i5a0v6ajabn59y73sbm5j85ppgpchr1ggm27xl8m4x07jj4dzpq"; depends=[]; }; RNetLogo = derive2 { name="RNetLogo"; version="1.0-4"; sha256="1z7jp454k197c0zbkn64zmf25wadkiznv3w2csgiz917cbx6xcn1"; depends=[igraph rJava]; }; RNewsflow = derive2 { name="RNewsflow"; version="1.2.6"; sha256="06hz5fim5ad8kbpc4crs9vdn7k9q5phhzscd46s4xk0b3n0i8wi1"; depends=[data_table igraph Matrix quanteda Rcpp RcppEigen RcppProgress scales stringi tm wordcloud]; }; @@ -4133,7 +4017,6 @@ in with self; { ROCpsych = derive2 { name="ROCpsych"; version="1.3"; sha256="0fcrhhxmvrrchbswb94liahbgz5pfhs86fbj0vby7vnakrhngh7v"; depends=[pROC reportROC]; }; RODBC = derive2 { name="RODBC"; version="1.3-19"; sha256="1zjf5mfv906kxy4cn2l10z35l7m5878aqjx9yj6pr2ydfxlbvz1s"; depends=[]; }; RODBCDBI = derive2 { name="RODBCDBI"; version="0.1.1"; sha256="0jkcc1lm8drsx1pkfj5h6rlbr98cgpvbf9ndzdwr048f3s8gd26i"; depends=[DBI RODBC]; }; - RODM = derive2 { name="RODM"; version="1.1"; sha256="0cyi2y3lsw77gqxmawla5jlm4vnhsagh3ykdgb6izxslc4j2fszx"; depends=[RODBC]; }; ROI = derive2 { name="ROI"; version="1.0-0"; sha256="0hd3l219wanhanbf4pgrh1pbxah50gf5qg2gff1djdr1xns7zn5h"; depends=[registry slam]; }; ROI_models_globalOptTests = derive2 { name="ROI.models.globalOptTests"; version="1.1-1"; sha256="1zj636cmjhhqbn6hh6760bi5y8lf6y7qqkz72yijq7dj2y1za2ph"; depends=[globalOptTests ROI]; }; ROI_models_miplib = derive2 { name="ROI.models.miplib"; version="1.0-0"; sha256="12yxra45s9f14dn12wibxrz598g3s39lm3af4dxmw9jnlfb8z84b"; depends=[R_utils Rglpk ROI]; }; @@ -4156,10 +4039,9 @@ in with self; { ROI_plugin_symphony = derive2 { name="ROI.plugin.symphony"; version="1.0-0"; sha256="0wai3yfglx81f97v139bffxf4cziqlqki4vnq76bw4p22g7hdzl8"; depends=[ROI Rsymphony slam]; }; ROMDB = derive2 { name="ROMDB"; version="0.1.0"; sha256="14jijcqd2zmps8sacx5nwfclj5yvqf4nx72y8pfvr0nswqqb895i"; depends=[dplyr httr magick purrr RODBC stringr]; }; ROOPSD = derive2 { name="ROOPSD"; version="0.2.5"; sha256="11cm9bnp0355vfwwlb4x4x3vh2z8k28fjms8ah6pah59x0i536i8"; depends=[Lmoments R6]; }; - ROP = derive2 { name="ROP"; version="1.0"; sha256="12gh83r3hp1qdmw3p5rr1wfhsh90pirx67q456gl9ai6zgd8nkq8"; depends=[ROCR]; }; ROSE = derive2 { name="ROSE"; version="0.0-4"; sha256="0y3v9zkgaxpv4f4zn22ra1gkkqg5hdz8js47ppciqahfydjbfl3p"; depends=[]; }; ROlogit = derive2 { name="ROlogit"; version="0.1.2"; sha256="09j9c24f7plzpnnhpmzdi4gapb7w1377ksjwk6i2xpyr4bfsrr5k"; depends=[evd survival]; }; - ROpenCVLite = derive2 { name="ROpenCVLite"; version="4.52.1"; sha256="0fwbizw9rb44fqi4hry0s0i44l7bs36wqsjjk49b79728b6sirpy"; depends=[pkgbuild]; }; + ROpenCVLite = derive2 { name="ROpenCVLite"; version="4.55.0"; sha256="103fn268vjafa05qggxdpf1yipx4f3y968040sabwrhh2rhk740b"; depends=[pkgbuild]; }; ROpenDota = derive2 { name="ROpenDota"; version="0.1.2"; sha256="17s73yj2w5hlpy09ad83m4s2d9shg5h4zg64wvbp1ivyvpp7l308"; depends=[jsonlite RCurl]; }; ROpenFIGI = derive2 { name="ROpenFIGI"; version="0.2.8"; sha256="0fvd25vsqkgi3jv4s2lnfag5qksyzyb48d7rhfw6z8piz37n4xaj"; depends=[httr jsonlite]; }; ROpenWeatherMap = derive2 { name="ROpenWeatherMap"; version="1.1"; sha256="0h1yw93v06bx8svhghh1fsrf837qax9896klh64b06djpgg9ngb9"; depends=[httr jsonlite RCurl]; }; @@ -4181,17 +4063,17 @@ in with self; { RPPanalyzer = derive2 { name="RPPanalyzer"; version="1.4.7"; sha256="16xppv7pzqk6kriqd5ym313z1r61l13dzpxp2q2zi0ai23hjgg92"; depends=[Biobase gam ggplot2 gplots Hmisc lattice limma quantreg]; }; RPS = derive2 { name="RPS"; version="1.0.1"; sha256="16n6wknw2m56kwi6rswgxjwjqblhaz5gyw94f96a7l6navqnvlp4"; depends=[ape geomorph Gmedian igraph MASS matlab]; }; RPostgreSQL = derive2 { name="RPostgreSQL"; version="0.7-3"; sha256="1fbixmnjp1kh6yiv8zhg8zi5ryvdf5j2jxv4agq5gcxf541s3g5x"; depends=[DBI]; }; - RPostgres = derive2 { name="RPostgres"; version="1.4.3"; sha256="1qhv6f9wcxdi83armsmcgfqmphf4qlnyxipxvbx8ksdnai54kgm5"; depends=[bit64 blob DBI hms lubridate plogr Rcpp withr]; }; + RPostgres = derive2 { name="RPostgres"; version="1.4.4"; sha256="1z6diaq4kwinl97d1v9cb96j8mrkj2s2v4ml1vykgy1jqi40dk69"; depends=[bit64 blob DBI hms lubridate plogr Rcpp withr]; }; RPresto = derive2 { name="RPresto"; version="1.3.7"; sha256="1iyprqlr0c73j63p0bc98bfq6dcmm1kzcj86q4y34vvwjqcbb99c"; depends=[DBI httr jsonlite openssl purrr Rcpp stringi]; }; RProbSup = derive2 { name="RProbSup"; version="3.0"; sha256="1z53zgx26fwfhb1vxad0l51v34y2lsplhwbjaf4r44rngdaw9h5n"; depends=[]; }; - RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.18"; sha256="1jgfbbb1yjjxikgsmbrrm5jv7gx7xmcv1x1lasc43y2q9hy3yd2h"; depends=[Rcpp]; }; + RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.19"; sha256="0iwaclf5xh4792l7pmp64y9lymq1jy8dv6byc0059jak1p7wsyb3"; depends=[Rcpp]; }; RPscoring = derive2 { name="RPscoring"; version="0.1.0"; sha256="063w83k9krwv3wvw2iq8bqkhjaj26as14d9g99l8jxfc02ljv1rr"; depends=[]; }; RPtests = derive2 { name="RPtests"; version="0.1.5"; sha256="04j4nqy2qxn1pa8ar0j0wgzkpd624983wwhd73l1ax7fnskx0yhh"; depends=[glmnet randomForest Rcpp]; }; RPublica = derive2 { name="RPublica"; version="0.1.3"; sha256="1w2pn1g44a00ls8kkzj53a739pq6vzp38px2k0yh10rlzimmb21l"; depends=[curl httr jsonlite]; }; RPushbullet = derive2 { name="RPushbullet"; version="0.3.4"; sha256="1mx433hvx660a63s5dzn655zmqv1c1qij0hzddl9z38032brc4ii"; depends=[curl jsonlite]; }; RPyGeo = derive2 { name="RPyGeo"; version="1.0.0"; sha256="1alqgx6blqqwxm76w05g82kc2icx8nvjw7qkdz73gf9ckgza5bb3"; depends=[magrittr purrr raster reticulate rmarkdown sf stringr]; }; RQEntangle = derive2 { name="RQEntangle"; version="0.1.3"; sha256="178haddk8nnscy2vym3k2a3ca9lf6nl7rpjja8lxqdjninvhvwb2"; depends=[iterators itertools]; }; - RQuantLib = derive2 { name="RQuantLib"; version="0.4.15"; sha256="18j3bm5imxbx888pywqhzfbc19b8xlll18jy0g4g8bskqycfqh69"; depends=[Rcpp zoo]; }; + RQuantLib = derive2 { name="RQuantLib"; version="0.4.16"; sha256="0vm7w2w1m5cwf29xvlvviqs88dg6n5i9ss9ph16brvnv6vs72qx1"; depends=[Rcpp zoo]; }; RRBoost = derive2 { name="RRBoost"; version="0.1"; sha256="0zp3csrpi0awk88m6sq5sf5v7j32q5sd4mwv61x6bblg991k404k"; depends=[RobStatTM rpart]; }; RRF = derive2 { name="RRF"; version="1.9.3"; sha256="04mvnijxgmjinc6bbasvximbdlw78pldb6ym5dm32ap68jh5bxyy"; depends=[]; }; RRI = derive2 { name="RRI"; version="1.1"; sha256="0msdc5j5vx4snl8r3q5nn0mw2i80jds5pjykhmigcrx6jzg6h6i7"; depends=[Rcpp RcppArmadillo]; }; @@ -4202,7 +4084,7 @@ in with self; { RRTCS = derive2 { name="RRTCS"; version="0.0.4"; sha256="16v6f5yvfq9l1b4h5mr4y0i2k404vdv354yz4k780w79qib7g39p"; depends=[sampling samplingVarEst]; }; RRate = derive2 { name="RRate"; version="1.0"; sha256="1q3f2gphdf50aijnk5xqfpxcqfd4jq7byb1gpb0vcnaxgi3a9lwm"; depends=[]; }; RRedshiftSQL = derive2 { name="RRedshiftSQL"; version="0.1.2"; sha256="03jbml8d19hcg6achnyc4hcnl5j10yvsx59j80r46zyn0flsnizq"; depends=[DBI RPostgreSQL]; }; - RRphylo = derive2 { name="RRphylo"; version="2.6.0"; sha256="1m75g8d9081a2cpjnypklrd9qmbbxsq0gsg6kyr5jngb42qcqcf2"; depends=[ape doParallel emmeans foreach geiger phytools]; }; + RRphylo = derive2 { name="RRphylo"; version="2.6.3"; sha256="1bqc10n81zdvqgh6g9vqf1df8qqwajj9027awlmh1wdji15accll"; depends=[ape doParallel emmeans foreach phytools]; }; RRreg = derive2 { name="RRreg"; version="0.7.3"; sha256="1nk2gg41bdhfnz7plkj4rnzl40sd6jd5z9843kxijp9ymagimwx4"; depends=[doParallel foreach lme4]; }; RSA = derive2 { name="RSA"; version="0.10.4"; sha256="0i0li587i6bjnmz9d1j1dyhpy7bfnq6298wr67fygcxfaszij16b"; depends=[aplpack ggplot2 lattice lavaan plyr RColorBrewer]; }; RSADBE = derive2 { name="RSADBE"; version="1.0"; sha256="1nzpm88rrzavk0n8iflsx8r3s1xcry15n80zqdw6jijjycz10w1q"; depends=[]; }; @@ -4219,8 +4101,8 @@ in with self; { RSIP = derive2 { name="RSIP"; version="1.0.0"; sha256="1yddqbnz0av69l53y83m7rnznc42qz66fc3qrispzaajs7p9n8d7"; depends=[ncdf4 raster rasterVis rgdal sp]; }; RSKC = derive2 { name="RSKC"; version="2.4.2"; sha256="0r9gpwhzscb6rbba3dg13p78pvskahgvsd59biag0shyii3xvwpm"; depends=[flexclust]; }; RSNNS = derive2 { name="RSNNS"; version="0.4-14"; sha256="081c20dcac8xxb0sp7kwzm4b7h5jrgcxxsfckjbxbda95g5n4qkz"; depends=[Rcpp]; }; - RSQL = derive2 { name="RSQL"; version="0.1.4"; sha256="0zda6cgsx1bd3xw2r9flsphbkrgma95qqv5vz70f234y9gkmc6v3"; depends=[DBI knitr lgr R6 RSQLite]; }; - RSQLite = derive2 { name="RSQLite"; version="2.2.12"; sha256="12ka9cp591sc3hn5r6z4skbjzm3nfq338wlpjdmw6rz26mmr2c9s"; depends=[bit64 blob DBI memoise pkgconfig plogr Rcpp]; }; + RSQL = derive2 { name="RSQL"; version="0.2.0"; sha256="19d61j8lipzwjnrmzvnbzha1nri9k6hxawc04jz6w5wg4ckslzrb"; depends=[DBI lgr R6]; }; + RSQLite = derive2 { name="RSQLite"; version="2.2.14"; sha256="0z307d7rx7blh2apc9dbw9vgad2ldbf9vbdjhmwlj0mwbs3nmqra"; depends=[bit64 blob DBI memoise pkgconfig plogr Rcpp]; }; RSSL = derive2 { name="RSSL"; version="0.9.5"; sha256="1h94dhs5yl1i7n153rbmj883iz3hql0b0cr12357nk4nvf36yih8"; depends=[cluster dplyr ggplot2 kernlab MASS Matrix quadprog Rcpp RcppArmadillo reshape2 scales tidyr]; }; RSSOP = derive2 { name="RSSOP"; version="1.1"; sha256="119xrxpaf68qdb2kj2pbaja6im2nbxsgibb1bnlpnc3fcxkmqcsf"; depends=[]; }; RSSampling = derive2 { name="RSSampling"; version="1.0"; sha256="0p10l7qmksx4ysz1jb84f9nbqzig8wxhwy33yk8hq29nb5i4c9ik"; depends=[LearnBayes]; }; @@ -4237,7 +4119,7 @@ in with self; { RSmallTelescopes = derive2 { name="RSmallTelescopes"; version="1.0.4"; sha256="16c0pfq9qp0c9b7aljp753iilk3dys14h77anwps8xg7j2lizvbh"; depends=[]; }; RSmartlyIO = derive2 { name="RSmartlyIO"; version="0.1.3"; sha256="02zswadv65a5p5q9rr12f819mh7jjqk8xj1kc1c0wqvr8dgz7fx9"; depends=[RCurl]; }; RSocrata = derive2 { name="RSocrata"; version="1.7.11-2"; sha256="0pwfz18931594n84b5l0y8bplqz5iw622ji4f2l9qkbg29jxq5gg"; depends=[httr jsonlite mime plyr]; }; - RSpectra = derive2 { name="RSpectra"; version="0.16-0"; sha256="1ab45as2ysjrvkhvmx7y3nbhd0y1w4j9k2a789lcd973zz4wzwda"; depends=[Matrix Rcpp RcppEigen]; }; + RSpectra = derive2 { name="RSpectra"; version="0.16-1"; sha256="16ij84wgpsmqmnxqiii8dgihy3bfxazry9znmckhwzba7m0d79fb"; depends=[Matrix Rcpp RcppEigen]; }; RSpincalc = derive2 { name="RSpincalc"; version="1.0.2"; sha256="09fjwfz1bzpbca1bpzxj18ki8wh9mrr5h6k75sc97cyhlixqd37s"; depends=[]; }; RSqlParser = derive2 { name="RSqlParser"; version="1.5"; sha256="0q5wa7bq7m94xx8hcf9p29v5vvkrqzygs3v6yy5xl6jgvshvscvi"; depends=[stringi stringr]; }; RStata = derive2 { name="RStata"; version="1.1.1"; sha256="1wx6cz4567xkfplybmbwmw25snhlaxn48yi620cv6p5xqv458yp7"; depends=[foreign]; }; @@ -4246,7 +4128,6 @@ in with self; { RStripe = derive2 { name="RStripe"; version="0.1"; sha256="0vp7zsd5xm8rf7196fivb76kkmxfx3gawxlyjhn9xqv92vawivra"; depends=[httr jsonlite RCurl]; }; RSurveillance = derive2 { name="RSurveillance"; version="0.2.1"; sha256="02jbm9xl2jg9cgq53i1cvj1rivhprgd07k1rxsayzrskvbmvyjpd"; depends=[epiR epitools mc2d]; }; RSurvey = derive2 { name="RSurvey"; version="0.9.3"; sha256="0yk969jdvpgv01zbmk4zyxcmrbdizh37bddj1k128ndyf191z37x"; depends=[colorspace inlmisc MBA raster rgdal rgeos sp]; }; - RSwissMaps = derive2 { name="RSwissMaps"; version="0.1.0.1"; sha256="16sdd0115793yj74i9m64yfxxn3gkk4nvb0qk2w8j7jjbqhflis0"; depends=[downloader dplyr ggplot2]; }; RTCC = derive2 { name="RTCC"; version="0.1.1"; sha256="0bnm0qwikbbpq3i5q5fwmsgi8fn7w0xk993ngpiqbrf5my3h93kc"; depends=[matrixStats Rcpp testthat vegan]; }; RTConnect = derive2 { name="RTConnect"; version="0.1.4"; sha256="1000jmmqzyhl6vh1ii75jdh88s9inaz52gvfwcin2k2zr7bi91ba"; depends=[]; }; RTD = derive2 { name="RTD"; version="0.4.1"; sha256="0zsv62hx1y9q5a6rd8ri91ff64671b84jr3f88h0q4yni2mribhr"; depends=[dplyr httr jsonlite purrr RcppMsgPack readr urltools uuid]; }; @@ -4272,10 +4153,8 @@ in with self; { RVideoPoker = derive2 { name="RVideoPoker"; version="0.3"; sha256="06s4dlw0pw8rcq5b31xxqdpdk396rf27mai2vpvmn585vbm1ib7a"; depends=[pixmap rpanel tkrplot]; }; RViennaCL = derive2 { name="RViennaCL"; version="1.7.1.8"; sha256="0lh23g8zyd50p6hnl4dfmzrsg48y74g2h7dism9j2n1pfd9p9k5d"; depends=[]; }; RVowpalWabbit = derive2 { name="RVowpalWabbit"; version="0.0.16"; sha256="0jnhizxdfc0dapl2ajq3lrbiw4g61vc035c8r9bi7lryw6yfrlys"; depends=[Rcpp]; }; - RVtests = derive2 { name="RVtests"; version="1.2"; sha256="0k7w6ml981zvr5bix197qw4kaf7rz5jqnwqlxf7aryxbm39gk16c"; depends=[glmnet pls spls]; }; RWBP = derive2 { name="RWBP"; version="1.0"; sha256="104vr2cdk185hh4zn3vmqvb14p1q8ifk11wdgvk7fli1m1zxxwdd"; depends=[igraph lsa RANN SnowballC]; }; RWDataPlyr = derive2 { name="RWDataPlyr"; version="0.6.4"; sha256="1jjra885339n6kpqz28rn9byy4md4s0k47m6ll4a6srd4hsf3ni3"; depends=[data_table dplyr feather Rcpp tibble tidyr xts zoo]; }; - RWebLogo = derive2 { name="RWebLogo"; version="1.0.3"; sha256="1n65mlnr163ywjnyyngnigbj0wpgkr38c3nx8hw5r8mwjnf3d617"; depends=[findpython]; }; RWeka = derive2 { name="RWeka"; version="0.4-44"; sha256="1j3v9hlwc4w4kinm62yy8rmqi0f21dlgjdg2ghxla0gbmqvr88zk"; depends=[rJava RWekajars]; }; RWekajars = derive2 { name="RWekajars"; version="3.9.3-2"; sha256="06nsylv65z9hxym1b6qnwllh306bq5phsgr0qn4nyr5im8cv1rhn"; depends=[rJava]; }; RWiener = derive2 { name="RWiener"; version="1.3-3"; sha256="0afrgflyfjv4jqm04had74zz4cs934zwvyxaan1r4qpg383kibpq"; depends=[]; }; @@ -4306,19 +4185,17 @@ in with self; { RainfallErosivityFactor = derive2 { name="RainfallErosivityFactor"; version="0.1.0"; sha256="16yrr2bl62m1nr81nzvmdq7s78f7fg50dah5dg5q4j4j7z8qfsqz"; depends=[]; }; RamanMP = derive2 { name="RamanMP"; version="1.0"; sha256="0rdj8vvs9l86yscx2mvy6nazzws8gd1x5bxvszlssinb20pns69z"; depends=[dplyr ggplot2 ggrepel imputeTS]; }; Ramble = derive2 { name="Ramble"; version="0.1.1"; sha256="0225za85i5nvf8l89i5bz7nxsxykd3v9fp1wgihmncca6n8vhgpl"; depends=[]; }; - Rambo = derive2 { name="Rambo"; version="1.1.1"; sha256="036rvjj6gcnf2gg5xl55n5p8j1pzifb9wmlpwnymz1csxgkl477i"; depends=[sna]; }; RandMeta = derive2 { name="RandMeta"; version="0.1.0"; sha256="0bh3rkdfmwqym47q8f90pw3mmx7q8jyp4rz16ggqrmk1b5bdyqjb"; depends=[]; }; RandPro = derive2 { name="RandPro"; version="0.2.2"; sha256="092mm9gybvcby2n161nldlq8s2ja2bc43jnkln6ss3lr29rmi9b3"; depends=[caret e1071]; }; RandVar = derive2 { name="RandVar"; version="1.2.1"; sha256="17c6bx644n604zpggmwx1z3krgd9v7c88il45cf5yhp7zf7cc718"; depends=[distr distrEx startupmsg]; }; RandomCoefficients = derive2 { name="RandomCoefficients"; version="0.0.2"; sha256="04l0aczrlbkjk0687w2gxs85ia71yy69mgankwkl37ksznh6y81m"; depends=[fourierin ks orthopolynom polynom RCEIM rdetools robustbase sfsmisc snowfall statmod tmvtnorm VGAM]; }; - RandomFields = derive2 { name="RandomFields"; version="3.3.14"; sha256="0c5r7l642cw56km56ijachnqhjh5k0izy03cl14rvbwkpywh09i4"; depends=[RandomFieldsUtils sp]; }; - RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="1.2.3"; sha256="0hlyyddafz4ik9m7bknhz6ghnqgli1f7gf6zyhlf94wh0775s9g1"; depends=[]; }; - RandomForestsGLS = derive2 { name="RandomForestsGLS"; version="0.1.3"; sha256="1xqzpfgs6hdkaf99xgrxc4m5k73vpvkhpgb4bw01rhhay08zzv4g"; depends=[BRISC matrixStats pbapply randomForest]; }; + RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="1.2.5"; sha256="0bjfz3bla6pr7wq4mqqcd4gmxqdx32gci4f71arfski31yx8ihlc"; depends=[]; }; + RandomForestsGLS = derive2 { name="RandomForestsGLS"; version="0.1.4"; sha256="1viq8vv4f0l0ywcr9s1n1vk23a917yj35lgvrpac9rf0vvk70an7"; depends=[BRISC matrixStats pbapply randomForest]; }; Randomuseragent = derive2 { name="Randomuseragent"; version="0.0.1"; sha256="1ym272z5a2wnprz59db8knszzqglmrdmk77r7cfyzy5jwcqzy4jn"; depends=[]; }; RanglaPunjab = derive2 { name="RanglaPunjab"; version="2.3.4"; sha256="01j3gww9kil02d44jwlkz6j7lwn2him830bnshkly0s7mgh22pgr"; depends=[jpeg shiny tidyverse]; }; RankAggreg = derive2 { name="RankAggreg"; version="0.6.6"; sha256="1g70njfv776qgp3i52kr6yxg7x9qliqaj33jm5vkgbajw1ampsdx"; depends=[gtools]; }; RankAggregator = derive2 { name="RankAggregator"; version="0.0.1"; sha256="0j4s4fv28fbc6ij6fzpmza9n5lfrql8ll33fi65vhczz9pjhpjii"; depends=[]; }; - RankResponse = derive2 { name="RankResponse"; version="3.1.1"; sha256="04s588zbxcjgvpmbb2x46bbf5l15xm7pwiaxjgc1kn1pn6g1080c"; depends=[]; }; + RankResponse = derive2 { name="RankResponse"; version="4.0.0"; sha256="1i686wgqz8pxdjsgyqr9i8fq1779h3jpzzrmh407pknawyii1vmy"; depends=[]; }; Rankcluster = derive2 { name="Rankcluster"; version="0.94.5"; sha256="1ddfcmiqy20s7sfjbxax0rvc9vb1ckr46icy1zsa103hhbp5pjqb"; depends=[Rcpp RcppEigen]; }; RankingProject = derive2 { name="RankingProject"; version="0.4.0"; sha256="11i47arl3r32iky29wjawb26g0hiji0ddl70gcrcy8v9j0h01vap"; depends=[]; }; RapidPolygonLookup = derive2 { name="RapidPolygonLookup"; version="0.1.1"; sha256="0h4snn3haa4a5rkafg98419by4nnz219wsm3y0dqgm4hw4bvha0g"; depends=[PBSmapping RANN RgoogleMaps sp]; }; @@ -4337,19 +4214,18 @@ in with self; { Rbeast = derive2 { name="Rbeast"; version="0.9.3"; sha256="1mh9gmg1gj1l42av16ndyzndix4y2jbgn59adhcgdyyb1cm3d62n"; depends=[]; }; Rbent = derive2 { name="Rbent"; version="0.1.0"; sha256="0xkb57dhhfd3342rv0xwbhbhn4zp5fbfch84fbh0sickm09l9vrj"; depends=[Rfit]; }; Rbgs = derive2 { name="Rbgs"; version="0.2"; sha256="1q0dnbcpgx7x9klr6z33z6g2p9p8mrmhnsqjy6qw15ch720rrgn3"; depends=[imager magrittr rJava]; }; - Rbitcoin = derive2 { name="Rbitcoin"; version="0.9.2"; sha256="0ndq4kg1jq6h0jxwhpdp8sw1n5shg53lwa1x0bi7rifmy0gnh66f"; depends=[data_table digest RCurl RJSONIO]; }; RblDataLicense = derive2 { name="RblDataLicense"; version="0.2.4"; sha256="0if4xwjkh4hw8mhfyw6sz0lpb3wcaz7kcx00axi035yf63bmplzg"; depends=[RCurl xts]; }; Rblpapi = derive2 { name="Rblpapi"; version="0.3.13"; sha256="0xqlh441bvvag8xafhyxrgsfydw1rqiv9mzki5z6m94dfbxscf0y"; depends=[BH Rcpp]; }; Rborist = derive2 { name="Rborist"; version="0.2-3"; sha256="0qf4m6ibr4mlrmsybb5b8f1hkmp9n6ksjsxc4msd3q4rr99zkczk"; depends=[data_table digest Rcpp]; }; Rcan = derive2 { name="Rcan"; version="1.3.82"; sha256="0asmlhh786c9gfgxkqybv8xzz8bqzirxvq8nr4gglx1pc812idkb"; depends=[data_table ggplot2 scales]; }; - Rcapture = derive2 { name="Rcapture"; version="1.4-3"; sha256="1rk1zgab6zi7hcmyqlb18kycv3cd15c7lwhw5kig96f2n3xymzig"; depends=[]; }; + Rcapture = derive2 { name="Rcapture"; version="1.4-4"; sha256="0yihjgpmq9agws1b0s3n9s1pdvw1wjfpcyvr8536v4ypfgkmjbcr"; depends=[]; }; Rcatch22 = derive2 { name="Rcatch22"; version="0.1.13"; sha256="0fc779dac54b6damyzg26fczpwigrhbyd9zpgn1ksrghlllcr0zg"; depends=[Rcpp]; }; RcellData = derive2 { name="RcellData"; version="1.3-2"; sha256="1zzkgpj2pc42xzz5pspyj981a04gjpna4br3lxna255366ijgz4l"; depends=[]; }; Rcereal = derive2 { name="Rcereal"; version="1.2.1.1"; sha256="16gak1kgsnla89b6nbhfb5w9xfjhdpxza8sfc2isbhfggvl1h79j"; depends=[]; }; RcextTools = derive2 { name="RcextTools"; version="0.1.1"; sha256="1rrij4ryspff9mn1c3jlzjprnipak7nzlb488pk0ci0awaccp5ga"; depends=[data_table igraph sqldf visNetwork]; }; - Rcgmin = derive2 { name="Rcgmin"; version="2013-2.21"; sha256="02igq7bdlxwa7ysfiyvqfhcvgm866lrp2z3060z5lmnp6afa0958"; depends=[numDeriv]; }; + Rcgmin = derive2 { name="Rcgmin"; version="2022-4.30"; sha256="04dr5w8ss004fk0w814x4hb78i7l3h1q5r00pjps43cpzgkvi116"; depends=[optextras]; }; RchivalTag = derive2 { name="RchivalTag"; version="0.1.2"; sha256="0285n5mxs643546qhyqkccaq1fkn1hxagrhj2abahskfl53i9rsw"; depends=[dygraphs mapdata maps maptools ncdf4 oceanmap PBSmapping plyr pracma raster readr rgeos sp xts]; }; - Rchoice = derive2 { name="Rchoice"; version="0.3-4"; sha256="1995a26zlkgknb9vdh7rsk3ichr948hh9gvhmcfxwb9v9anw2ng8"; depends=[Formula maxLik memisc miscTools msm numDeriv plm plotrix sandwich]; }; + Rchoice = derive2 { name="Rchoice"; version="0.3-5"; sha256="0q6xl8gd39299g3vqbial02d9xlmdsbzj59ik2zwkn235jakpvg3"; depends=[Formula maxLik memisc miscTools msm numDeriv plm plotrix sandwich]; }; RclusTool = derive2 { name="RclusTool"; version="0.91.3"; sha256="0f6v2p6dg3fq3vzys6hgwmmgyrxfj2kb4wpbywd7f9p5yd9cfd88"; depends=[class cluster conclust corrplot e1071 factoextra FactoMineR ggplot2 jpeg MASS mclust mda mmand nnet png randomForest reshape sp stringi stringr tcltk2 tkrplot]; }; Rcmdr = derive2 { name="Rcmdr"; version="2.7-2"; sha256="16sx43887zb30j1c8f4xlf4jy5ij8v5kfr3mlsymj99v0i3dq4fs"; depends=[abind car effects lme4 RcmdrMisc relimp tcltk2]; }; RcmdrMisc = derive2 { name="RcmdrMisc"; version="2.7-2"; sha256="0r5vrnpd6zs2a2cnab15k6143kdwizaivb3dznjb59kv2aawg3w3"; depends=[abind car colorspace e1071 foreign haven Hmisc lattice MASS nortest readstata13 readxl sandwich]; }; @@ -4357,7 +4233,7 @@ in with self; { RcmdrPlugin_BiclustGUI = derive2 { name="RcmdrPlugin.BiclustGUI"; version="1.1.3"; sha256="1v0vdr6rffcq5qjqwmnmxbjwcf01zp7lrj81grnjxwqg4xjrcj69"; depends=[BcDiag BiBitR BicARE biclust fabia gplots iBBiG Rcmdr s4vd superbiclust viridis]; }; RcmdrPlugin_DCCV = derive2 { name="RcmdrPlugin.DCCV"; version="0.1-1"; sha256="1snlzffs9f300iyxsbarykc53pfa8h9qsk354xki7n0wz5jp1lc3"; depends=[DCchoice Rcmdr]; }; RcmdrPlugin_DCE = derive2 { name="RcmdrPlugin.DCE"; version="0.1-2"; sha256="04c6xig7a8rbwy1cwahxxk5x5vzdijrq0dl2hr8dlivpyv2pjq73"; depends=[Rcmdr support_CEs survival]; }; - RcmdrPlugin_DoE = derive2 { name="RcmdrPlugin.DoE"; version="0.12-3"; sha256="1iifn71kjjgcp7dfz2pjq57mgbv4rrznrl3b3k9gdc2dva1z9zvc"; depends=[DoE_base DoE_wrapper FrF2 Rcmdr RcmdrMisc relimp]; }; + RcmdrPlugin_DoE = derive2 { name="RcmdrPlugin.DoE"; version="0.12-4"; sha256="0iwl2g1xjr30xdgpy7wiw5c6j0amag57ia5qvcpgxwj3pnyxa2lx"; depends=[DoE_base DoE_wrapper FrF2 Rcmdr RcmdrMisc]; }; RcmdrPlugin_EACSPIR = derive2 { name="RcmdrPlugin.EACSPIR"; version="0.2-2"; sha256="10r6rb0fwlilcnqxa38zh7yxc54x1a0by5x4f6gzdn9zs7aj5l1r"; depends=[abind ez nortest R2HTML Rcmdr RcmdrMisc reshape]; }; RcmdrPlugin_EBM = derive2 { name="RcmdrPlugin.EBM"; version="1.0-10"; sha256="02zips1jbfn7cshjlrm1gr632px2zxlys8i0f1nrf1gifl44v1qw"; depends=[abind epiR Rcmdr]; }; RcmdrPlugin_EZR = derive2 { name="RcmdrPlugin.EZR"; version="1.55"; sha256="0xdvv6pzkikhdpkqw7dqa7rznp9lhrjs5fyq9z0p11zj9m548775"; depends=[Rcmdr readstata13]; }; @@ -4379,12 +4255,11 @@ in with self; { RcmdrPlugin_SLC = derive2 { name="RcmdrPlugin.SLC"; version="0.2"; sha256="1nwpzmgfla1y05dxf81w0wmvvmvcq5jn5k8phlq30920ia7ybs8g"; depends=[Rcmdr SLC]; }; RcmdrPlugin_TeachStat = derive2 { name="RcmdrPlugin.TeachStat"; version="1.1.0"; sha256="1djyiqj7k96csrbzql5gmi5dca3c8rf3ymskfskrx62zpxmn4xic"; depends=[distr distrEx Hmisc IndexNumR lme4 randtests Rcmdr tcltk2 tseries]; }; RcmdrPlugin_TeachingDemos = derive2 { name="RcmdrPlugin.TeachingDemos"; version="1.2-0"; sha256="14zsqjni2w2smq99cv1pjdw90zw83g4nn7h7cn07fms9j0g12yd6"; depends=[Rcmdr TeachingDemos]; }; - RcmdrPlugin_UCA = derive2 { name="RcmdrPlugin.UCA"; version="4.5-1"; sha256="0727z23byqsi5bdfp2wya4ymlbh39q8hsn4ij162lg0wfpm28wzd"; depends=[IQCC qcc qicharts2 randtests Rcmdr rmarkdown TeachingDemos tseries]; }; + RcmdrPlugin_UCA = derive2 { name="RcmdrPlugin.UCA"; version="5.1-1"; sha256="15z2pyi92vznkbfqycc33b39dl2wx0kf2l5w1wv8pr85i5449dzq"; depends=[IQCC qcc qicharts2 randtests Rcmdr rmarkdown TeachingDemos tseries]; }; RcmdrPlugin_WorldFlora = derive2 { name="RcmdrPlugin.WorldFlora"; version="1.1"; sha256="1cv580ar1kp0174h2mcg05nrr1d8sdlmimhyzk908gjhghmi6ahj"; depends=[Rcmdr WorldFlora]; }; RcmdrPlugin_aRnova = derive2 { name="RcmdrPlugin.aRnova"; version="0.0.5"; sha256="0ys3565pcbr554yb1gi2h149vhvwc0gdfmh7mz8zzd4367hqn553"; depends=[Rcmdr]; }; RcmdrPlugin_coin = derive2 { name="RcmdrPlugin.coin"; version="1.0-22"; sha256="0qmdjnjmgq52wgl4llg69q9x7hvwd73mz3swv0sv88v8zqg7xj93"; depends=[coin multcomp Rcmdr survival]; }; RcmdrPlugin_depthTools = derive2 { name="RcmdrPlugin.depthTools"; version="1.4"; sha256="16y60yymx97nh587939lahsh0mk53yy25zy6i90l9vad0r7ih23v"; depends=[depthTools Rcmdr]; }; - RcmdrPlugin_lfstat = derive2 { name="RcmdrPlugin.lfstat"; version="0.8.3"; sha256="1rcr43dqyb9zw9av3awkz0640vmvhxrafal5brnhqnpg4hfbpma3"; depends=[lfstat Rcmdr]; }; RcmdrPlugin_orloca = derive2 { name="RcmdrPlugin.orloca"; version="4.8.2"; sha256="0nkszrbcprd08p0i9r6k2syg44kyqpdakmwmjf480pwydq3sz69n"; depends=[orloca orloca_es Rcmdr]; }; RcmdrPlugin_plotByGroup = derive2 { name="RcmdrPlugin.plotByGroup"; version="0.1-0"; sha256="10wc7lnihsrldsynq2s0syr1aqmvfnj9rhgwh1nkk7jlrwcgj0z6"; depends=[lattice Rcmdr]; }; RcmdrPlugin_pointG = derive2 { name="RcmdrPlugin.pointG"; version="0.6.6"; sha256="0sc3akbpdys353va05b40g3rq8qihw0pmhvv0kckkhsgrbr8mc07"; depends=[Rcmdr RColorBrewer]; }; @@ -4418,9 +4293,9 @@ in with self; { RcppDate = derive2 { name="RcppDate"; version="0.0.3"; sha256="1nwb4fdjxwn0c1ckj1fpsxl2hxk5z3sk3y5giwgdag6nfv7yfplw"; depends=[]; }; RcppDist = derive2 { name="RcppDist"; version="0.1.1"; sha256="02g57xwfipdcljv06krhm02dbqn9kfyj2km6rdg0a7vq9prwdz1x"; depends=[Rcpp RcppArmadillo]; }; RcppDynProg = derive2 { name="RcppDynProg"; version="0.2.0"; sha256="10nc0sx3n83kg8rddbajifr9q8iyjmm59z5xcpqfmmfi345i26al"; depends=[Rcpp RcppArmadillo wrapr]; }; - RcppEigen = derive2 { name="RcppEigen"; version="0.3.3.9.1"; sha256="0qp9gypar280lm84pc8w0fxw4jgwqygwi3qnl5sl52kpkcj8c14a"; depends=[Matrix Rcpp]; }; + RcppEigen = derive2 { name="RcppEigen"; version="0.3.3.9.2"; sha256="14ylrq7mmylmi513zkwyqqy43kqbz95fc6fzpagqvyx6snaffir5"; depends=[Matrix Rcpp]; }; RcppEigenAD = derive2 { name="RcppEigenAD"; version="1.0.0"; sha256="18zm9hsfqwiicxsdm87ix3qc261ljxxn2s736p6aayx82b6vwkz6"; depends=[BH functional memoise Rcpp RcppEigen Rdpack readr]; }; - RcppEnsmallen = derive2 { name="RcppEnsmallen"; version="0.2.18.2.1"; sha256="10y86c809ijzvli3vbkm7i6si3ik83ppsr6pivqznx9wslzvk79i"; depends=[Rcpp RcppArmadillo]; }; + RcppEnsmallen = derive2 { name="RcppEnsmallen"; version="0.2.19.0.1"; sha256="0cc67nx8iddi70m8s2b683k4zcfakqw90rxm8wmaa2g3vpjbvadl"; depends=[Rcpp RcppArmadillo]; }; RcppExamples = derive2 { name="RcppExamples"; version="0.1.9"; sha256="0568zipgjxgmx086mlfpp5n7v8kf50gwrylvhl1bgvzb2vvr9dhj"; depends=[Rcpp]; }; RcppFaddeeva = derive2 { name="RcppFaddeeva"; version="0.1.0"; sha256="1rah18sdfmbcxy83i7vc9scrwyr34kn9xljkv9pa31js68gn2jrl"; depends=[knitr Rcpp]; }; RcppFarmHash = derive2 { name="RcppFarmHash"; version="0.0.2"; sha256="0nkismq7hmp1ahwv4z438zrcj7mqsfmas2yd6av6k2cmkgklqkbk"; depends=[Rcpp]; }; @@ -4439,7 +4314,7 @@ in with self; { RcppParallel = derive2 { name="RcppParallel"; version="5.1.5"; sha256="1sn211ajlb1p12sglxqns175rg078yvww268m8cp0vvd7cmk55k3"; depends=[]; }; RcppProgress = derive2 { name="RcppProgress"; version="0.4.2"; sha256="0j2b37gwjpgmrnr00srdzm751hzlpsjb54ph63xxmcdfnwhlnqmi"; depends=[]; }; RcppQuantuccia = derive2 { name="RcppQuantuccia"; version="0.1.0"; sha256="0nclclhrhvdma8s07jly0xrmaf8iqigln137wmjnsmj6hg7r8ph9"; depends=[BH Rcpp]; }; - RcppRedis = derive2 { name="RcppRedis"; version="0.2.0"; sha256="070q8kp5lkz22g4w8fkh5cg3lcc2zwvkpkqz1smi6xcjv7m37bnh"; depends=[RApiSerialize Rcpp]; }; + RcppRedis = derive2 { name="RcppRedis"; version="0.2.1"; sha256="1pcfdg499vakn5rn3jald2hhrzhzsggwg95zm2293ma3pihrjvqa"; depends=[RApiSerialize Rcpp]; }; RcppRoll = derive2 { name="RcppRoll"; version="0.3.0"; sha256="0srzfhzkk42kzrdjnhbb37946jp1p688rgysy6k3i2is8jb21zyb"; depends=[Rcpp]; }; RcppSMC = derive2 { name="RcppSMC"; version="0.2.6"; sha256="1svpzx4h9baipqnx2793vkjh1lnr92y82whpryqzzm4i7b6zx27i"; depends=[Rcpp RcppArmadillo]; }; RcppSimdJson = derive2 { name="RcppSimdJson"; version="0.1.7"; sha256="0ajbm7qy3fqlaadpzfhzsaczszlw6l5p31mmr1xd2cb31wszpg9r"; depends=[Rcpp]; }; @@ -4473,8 +4348,7 @@ in with self; { Rdta = derive2 { name="Rdta"; version="1.0.0"; sha256="1zmyh61wrzqwyfjbfcxg41cri7hy9r0jfwnixcvd086y0vxq7fdn"; depends=[MCMCpack mvtnorm Rdpack]; }; Rdtq = derive2 { name="Rdtq"; version="0.1"; sha256="114pyf95nl132014ygn84xi41c2zf1ii2wfgd1acwnnmfzvdw24s"; depends=[Matrix Rcpp]; }; Rduino = derive2 { name="Rduino"; version="0.1"; sha256="0r1yy3a2n8a4niasfjn77gv130a062i802r7xhbg0abljv5m6ra5"; depends=[serial]; }; - ReCiPa = derive2 { name="ReCiPa"; version="3.0"; sha256="019vlvgxnqqlwghxygfqggzp2b4x2pqzdrbhaa703zdhm58k0n1g"; depends=[]; }; - ReDaMoR = derive2 { name="ReDaMoR"; version="0.5.2"; sha256="0yc1jh2ashgy9zcns7dcd5zgnpgigmzrcxi28xwkgjzaidsc7lm7"; depends=[colourpicker crayon dplyr DT igraph jsonlite magrittr markdown readr rintrojs rstudioapi shiny shinyjs visNetwork]; }; + ReDaMoR = derive2 { name="ReDaMoR"; version="0.6.3"; sha256="0wvcy2w9ydhn5spcb909llz621xsl4ayzqq63hb4avvlj1s4g0zb"; depends=[colourpicker crayon dplyr DT igraph jsonlite magrittr markdown Matrix readr rintrojs rstudioapi shiny shinyjs visNetwork]; }; ReDirection = derive2 { name="ReDirection"; version="1.0.1"; sha256="0hcl09drgr93yjssw2mpdpvr084ifzylsi6140hafjpm9f9pmvkm"; depends=[gtools MASS pracma]; }; ReIns = derive2 { name="ReIns"; version="1.0.10"; sha256="04rqb2jhmgq1az1c1rbs6jfg6gpxjs34k0m4w3a8gnq48l6dwqi8"; depends=[doParallel foreach Rcpp survival]; }; ReacTran = derive2 { name="ReacTran"; version="1.4.3.1"; sha256="05c9jfvj134gy3by7m3r1fbar0m39vaydr7d2py9cakzs44fqfpj"; depends=[deSolve rootSolve shape]; }; @@ -4492,19 +4366,17 @@ in with self; { Rediscover = derive2 { name="Rediscover"; version="0.3.0"; sha256="0396shg9gf0r7q5jlrab5mr003fz7kj8xdq5chnzmild6kwyq3sk"; depends=[data_table maftools Matrix matrixStats PoissonBinomial RColorBrewer ShiftConvolvePoibin speedglm]; }; Redmonder = derive2 { name="Redmonder"; version="0.2.0"; sha256="02qrz1b0g7hdacj2s2bks5gfwnypkbiwlmn0bv7im1zz1swg9cp8"; depends=[]; }; RefManageR = derive2 { name="RefManageR"; version="1.3.0"; sha256="1spzdp5ni52dybcaxqnhwdphh27wjyrsfy4hsxsplpg9rqwfqfps"; depends=[httr jsonlite lubridate plyr stringr xml2]; }; - RegClust = derive2 { name="RegClust"; version="1.0"; sha256="1d9w74phw4fgafglc18j7dpmln96fvxnf1kdc9zddgj90p8yfx63"; depends=[]; }; RegKink = derive2 { name="RegKink"; version="0.1.0"; sha256="1q7jpsh3al18i2dv67lmv5d6jgiy2px8jaxwkgg62njisk8c5qng"; depends=[MASS]; }; RegSDC = derive2 { name="RegSDC"; version="0.6.0"; sha256="1vlxvdqnab0paawfxikl8gkq5pvv62xb1l6rvlzchj988vnaw9df"; depends=[MASS Matrix SSBtools]; }; RegressionFactory = derive2 { name="RegressionFactory"; version="0.7.4"; sha256="0mhyjqp8x66zwnbxpwq3a8180z48rrm7hp50028grb2x19lp8qkd"; depends=[]; }; RegularizedSCA = derive2 { name="RegularizedSCA"; version="0.5.4"; sha256="1nw6hd9y2n1h3j1fqqkymz13xizv5xrsj93w702kkvkbwyl3yall"; depends=[colorspace ggplot2 gtools lattice mice psych RGCCA]; }; ReinforcementLearning = derive2 { name="ReinforcementLearning"; version="1.0.5"; sha256="0zk1hy4p5adyjm1430a8ad5acn9qaax1si8qqfxqayfmlj954sj9"; depends=[data_table ggplot2 hash]; }; - RelValAnalysis = derive2 { name="RelValAnalysis"; version="1.0"; sha256="1jl1gfj44gfkmc1yp6g5wwn4miydwpvxwrg76rnkv9454zrc5pvp"; depends=[zoo]; }; Relatedness = derive2 { name="Relatedness"; version="2.0"; sha256="1aidklwk8q2wdfsmhlbd3vzq9kzsyh4wn1g28biyb6lq7iwq1hl4"; depends=[]; }; Relectoral = derive2 { name="Relectoral"; version="0.1.0"; sha256="0kpdafdvpcs6iicpc10i634nlk7dqk2nymdnnlkpp5frdxlbycvx"; depends=[dplyr ggforce ggplot2 readxl rmarkdown sf xlsx]; }; RelimpPCR = derive2 { name="RelimpPCR"; version="0.2.4"; sha256="0svfyh313wawzqx9hfb4cg0wn2ir6nd769z1k3dckdsb8d7xkh3q"; depends=[caret ggplot2 relaimpo reshape2 Rmisc]; }; Renext = derive2 { name="Renext"; version="3.1-0"; sha256="074djs4y71667aylpgh514pzijr90rgpzm4w5ayq9cgaqz22m3am"; depends=[evd numDeriv]; }; RenvModule = derive2 { name="RenvModule"; version="1.1"; sha256="1wmz6k0f9lpa8d7qxqm308l7h11k0cj07q3qisfjic5sp308c3d2"; depends=[]; }; - Renvlp = derive2 { name="Renvlp"; version="3.0"; sha256="0mnyckmzlkp6ypqjlw94wjq0c46gxi3vn1a08a9m0irm9wd2xa3z"; depends=[Rsolnp]; }; + Renvlp = derive2 { name="Renvlp"; version="3.1"; sha256="1qylr2lz0ncy1qi0c68ha8a9l53nn8sn8fx069sfsxw02svj2x3h"; depends=[Rsolnp]; }; ReorderCluster = derive2 { name="ReorderCluster"; version="1.0"; sha256="0ss750frzvj0bm1w7zblmcsjpszhnbffwlkaw31sm003lbx9hy58"; depends=[gplots Rcpp]; }; RepaymentPlan = derive2 { name="RepaymentPlan"; version="0.1.0"; sha256="1fd4n24bd5s2kqmls7mmsidblaf8nzm97kz52mfsb6i6fci0pgah"; depends=[]; }; RepeatedHighDim = derive2 { name="RepeatedHighDim"; version="2.0.0"; sha256="1n9w4jb25pm0mmsahlfhkp9jmhgp5b21l1g85gm2wbxqkjsg7g0g"; depends=[MASS nlme]; }; @@ -4520,7 +4392,7 @@ in with self; { ResistorArray = derive2 { name="ResistorArray"; version="1.0-32"; sha256="0zqnl0bbqrj5hn5ywhlqyrlz5ryql88qahlgs9989v4rljcxxlam"; depends=[]; }; ResourceSelection = derive2 { name="ResourceSelection"; version="0.3-5"; sha256="1vg5fkjfwkganxf0ji70pkp071841hjgr5sjxlaky8mx7n0cy80x"; depends=[MASS Matrix pbapply]; }; RespirAnalyzer = derive2 { name="RespirAnalyzer"; version="1.0.1"; sha256="0zdgbim5496fpfxi4cgn4fbl70grclii2naizaiabm4cz350hf6y"; depends=[pracma Rcpp signal]; }; - RestRserve = derive2 { name="RestRserve"; version="1.0.0"; sha256="0qb1x13n2sm0lg52x3289jsln3gw9rawfs1z2372pvr9ydpjsfqb"; depends=[checkmate jsonlite mime R6 Rcpp Rserve uuid]; }; + RestRserve = derive2 { name="RestRserve"; version="1.1.1"; sha256="1ydsdgy6mxl0zqk7xqf4v6if5nf2qv7k48q340fhaqyjk2gd60p7"; depends=[checkmate digest jsonlite mime R6 Rcpp Rserve uuid]; }; RevEcoR = derive2 { name="RevEcoR"; version="0.99.3"; sha256="1nym263ynjdir5kxv35jnmki9mshlplq0sk3xnjd4ac6f1cfbfqj"; depends=[gtools igraph magrittr Matrix plyr purrr stringr XML]; }; ReviewR = derive2 { name="ReviewR"; version="2.3.7"; sha256="133q3jiydf4n2frx4zmapbqgvz1f5bn1wkgsnfaaffxpz5962kxk"; depends=[bigrquery config dashboardthemes DBI dbplyr dplyr DT gargle glue golem httr jsonlite magrittr pkgload purrr redcapAPI REDCapR rlang RPostgres RSQLite shiny shinycssloaders shinydashboard shinydashboardPlus shinyjs shinyWidgets snakecase stringr tibble tidyr]; }; Revticulate = derive2 { name="Revticulate"; version="1.0.0"; sha256="00pz8nnbl7dcbbqw8kdbdai1i3jc941l42nppaa1kxk6i3dci7gs"; depends=[ape comprehenr jsonlite knitr rstudioapi stringr usethis]; }; @@ -4541,8 +4413,6 @@ in with self; { Rglpk = derive2 { name="Rglpk"; version="0.6-4"; sha256="19mzpyimzq9zqnbi05j79b2di3nzaln8swggs9p8sqdr60qvr3d2"; depends=[slam]; }; RgoogleMaps = derive2 { name="RgoogleMaps"; version="1.4.5.3"; sha256="02v8k0bw70q4qwx4lcdy8p25q7n3ql2ll46lfpqllxa1p26svmfi"; depends=[png sp]; }; RhpcBLASctl = derive2 { name="RhpcBLASctl"; version="0.21-247.1"; sha256="0scpr6jq25xx7wmqyc380ann4h536ll0g7wblikk25yqvpamzrav"; depends=[]; }; - RidgeFusion = derive2 { name="RidgeFusion"; version="1.0-3"; sha256="10llmrsfpcqrkcbw7zj44kvfy7ywn9rk49n7zplilz8h94zzcmjv"; depends=[mvtnorm]; }; - Ridit = derive2 { name="Ridit"; version="1.1"; sha256="02cni6hzf1bsns7vi8vklnhc0pfb5vwqhjnnfnjnnaxpzpsbvdfn"; depends=[]; }; RiemBase = derive2 { name="RiemBase"; version="0.2.5"; sha256="1ikv7n8hp23a5dbmnfypdkx74vxwjd9br0hvysnhhpg1ffvr5vhi"; depends=[pracma Rcpp RcppArmadillo Rdpack]; }; Riemann = derive2 { name="Riemann"; version="0.1.4"; sha256="1a3mlfgnzdvl5x1nqnmm4v3xb2nkdq87c21m6xyxbm7zh5vx5b6m"; depends=[CVXR DEoptim lpSolve maotai Matrix Rcpp RcppArmadillo Rdimtools Rdpack RiemBase T4cluster]; }; Riex = derive2 { name="Riex"; version="1.0.2"; sha256="03627dik6dd9d2kwv757zanh0i4invmcwg162m9ayhv41ygj5z1l"; depends=[dplyr ggplot2 httr purrr quantmod rjson stringr tibble tidyr TTR urltools xts zoo]; }; @@ -4555,9 +4425,9 @@ in with self; { Ritc = derive2 { name="Ritc"; version="1.0.2"; sha256="03smhxjhjfkc9pxhlgg54b6v2jznpmnws8373qpvn9a9ky5bcq2l"; depends=[minpack_lm]; }; RiverBuilder = derive2 { name="RiverBuilder"; version="0.1.1"; sha256="06cd1m4liv2bsh2sxplq2zl45g9zq8gsgvh14d0zr0pqm8z4dsyw"; depends=[]; }; RiverLoad = derive2 { name="RiverLoad"; version="1.0.3"; sha256="01nrkj75smnsfrl0x82dif67q9xs15ngksz0p73i7xf6dqprjjcf"; depends=[imputeTS]; }; - Rivivc = derive2 { name="Rivivc"; version="0.9"; sha256="0gl3040pp9nqm4g2ympnx80z64zfnn1hfsxka8ynd2cqhjn3b5i1"; depends=[signal]; }; + Rivivc = derive2 { name="Rivivc"; version="0.9.1"; sha256="0vbnkid5cp9af0m2kk3cblb3fr69llzmk6ckjy1brgyvrrmw5hz3"; depends=[signal]; }; RkMetrics = derive2 { name="RkMetrics"; version="1.3"; sha256="1k6vnr1r4h69iznib638z45gd0f8wc4g4h0ji9f0017883g77li1"; depends=[]; }; - Rlab = derive2 { name="Rlab"; version="2.15.1"; sha256="1pb0pj84i1s4ckdmcglqxa8brhjha4y4rfm9x0na15n7d9lzi9ag"; depends=[]; }; + Rlab = derive2 { name="Rlab"; version="4.0"; sha256="019rmciqza5rd5z9hvh8xk20c2rjhzyzp1k5731qm1d3jz5lwx5k"; depends=[]; }; Rlabkey = derive2 { name="Rlabkey"; version="2.8.4"; sha256="1k1acj7vzb08syrbagzkvxjfdlygjdjcpxim1qgrl451jby3hh8k"; depends=[httr jsonlite Rcpp]; }; Rlda = derive2 { name="Rlda"; version="0.2.6"; sha256="0i8n01h9072q339p1kiqhcpwphw0d2x6bsszbhgfqc2b160dk2bl"; depends=[coda doParallel foreach gtools Rcpp RcppArmadillo RcppProgress]; }; Rlgt = derive2 { name="Rlgt"; version="0.1-3"; sha256="0g610v5rch5s31gc7dy9zx4mcgsdhn82y1pmr2rs14qma0v7x515"; depends=[BH forecast Rcpp RcppEigen rstan rstantools sn StanHeaders]; }; @@ -4569,7 +4439,7 @@ in with self; { Rmalschains = derive2 { name="Rmalschains"; version="0.2-7"; sha256="02wkq0aqx679ysr5cr1r2h4k2700lppycz4bynalnpmqkvmr6wzs"; depends=[Rcpp]; }; RmarineHeatWaves = derive2 { name="RmarineHeatWaves"; version="0.17.0"; sha256="09lrrxnkkfnbidnmag1czx2xzssdl09348nkc6pqgq6xz36a3mqc"; depends=[dplyr ggplot2 lazyeval lubridate plyr raster rlang tibble tidyr zoo]; }; RmecabKo = derive2 { name="RmecabKo"; version="0.1.6.2"; sha256="1i08wlfd14wmvwrsvjyhgzxkwzfp4jiwbzymw8m25pvyjxgi7jmy"; depends=[Rcpp stringr]; }; - Rmisc = derive2 { name="Rmisc"; version="1.5"; sha256="1ijjhfy3v91fspid77rrkc5dkcb2lav37wc3f4k5lwrn24wzy5y8"; depends=[lattice plyr]; }; + Rmisc = derive2 { name="Rmisc"; version="1.5.1"; sha256="1h6jb0xwkyhm9lwm7nj9bhrb5dhrsifvkpqkrd594j1lz74dar8x"; depends=[lattice plyr]; }; Rmixmod = derive2 { name="Rmixmod"; version="2.1.6"; sha256="0vrpqyckjsscgdh5yny4d1jkq16w3kd8nl97ycdc2vmz1q6y1a6s"; depends=[Rcpp RcppEigen]; }; RmixmodCombi = derive2 { name="RmixmodCombi"; version="1.0"; sha256="0cwcyclq143938wby0aj265xyib6gbca1br3x09ijliaj3pjgdqi"; depends=[Rcpp Rmixmod]; }; Rmosek = derive2 { name="Rmosek"; version="1.3.5"; sha256="18q39n2p3gms9zqrl8g15rjjk4v64365v0rm8r7zvvivh1hy5xa0"; depends=[]; }; @@ -4581,7 +4451,7 @@ in with self; { Rnmr1D = derive2 { name="Rnmr1D"; version="1.3.0"; sha256="1x06a2bsfpx27pgpxj0dih72pav26g3j0lmh0fa8gjw45jc64f4a"; depends=[base64enc doParallel foreach ggplot2 igraph impute MASS MassSpecWavelet Matrix minqa plotly plyr ptw Rcpp signal speaq XML]; }; Rnumerai = derive2 { name="Rnumerai"; version="2.1.4"; sha256="0zxpim1wgymdhdyl7dcvc16iic57wmn8qvxicps9kgr8wxgic0p8"; depends=[arrow data_table dplyr ggplot2 httr lubridate purrr tidyr]; }; Rnvd3 = derive2 { name="Rnvd3"; version="1.0.0"; sha256="13l5vcbcm88jfsc11ijkvr1s8qk8fflclazs4kl1k2wzpnlr6z6a"; depends=[data_table htmltools htmlwidgets jsonlite lazyeval lubridate viridisLite]; }; - RoBMA = derive2 { name="RoBMA"; version="2.2.1"; sha256="0hga8yzvjskislc7kb4dlvkk9cagwpcpxqry74hwix8si2hgsyc8"; depends=[BayesTools bridgesampling callr coda extraDistr ggplot2 mvtnorm psych Rdpack rjags runjags scales]; }; + RoBMA = derive2 { name="RoBMA"; version="2.2.2"; sha256="0p46z1vqzaym9iqdhslbg53pyiwrmzjmpg8ckdm2y43vy56cn5zx"; depends=[BayesTools bridgesampling callr coda extraDistr ggplot2 mvtnorm psych Rdpack rjags runjags scales]; }; RobAStBase = derive2 { name="RobAStBase"; version="1.2.1"; sha256="0dn93bcyz9kxbj38sc1wisfa6v0666v9gk6y3zq0ihjkkhkmdwq3"; depends=[distr distrEx distrMod RandVar rrcov startupmsg]; }; RobAStRDA = derive2 { name="RobAStRDA"; version="1.2.0"; sha256="1s84j5in4av9zbbszv8j2rpigrd9ws9h4hz64jw7xagsj3xb49kz"; depends=[]; }; RobExtremes = derive2 { name="RobExtremes"; version="1.2.0"; sha256="150p94f0g75g54qcaq4x45lk4sxiyvv1zs4hxkicf46raybvsv89"; depends=[actuar distr distrEx distrMod evd RandVar RobAStBase RobAStRDA robustbase ROptEst startupmsg]; }; @@ -4593,8 +4463,8 @@ in with self; { RobPer = derive2 { name="RobPer"; version="1.2.2"; sha256="0631qfpz61606r50vzn7b3h7arfwxcs8j13q1hg779qx60kwrliy"; depends=[BB quantreg rgenoud robustbase]; }; RobRSVD = derive2 { name="RobRSVD"; version="1.0"; sha256="07z5fw8j5lq7nyxgkvb9i4iwb5inddz2ib4m2bjx6q4c1ricpqz9"; depends=[]; }; RobRex = derive2 { name="RobRex"; version="1.2.0"; sha256="1npgbdvdzb0p0w77fsngrwg968y621p3lx8qw69ns8qgxjkismqp"; depends=[distr RandVar RobAStBase ROptRegTS]; }; - RobStatTM = derive2 { name="RobStatTM"; version="1.0.3"; sha256="12m10jcy929143kl6v9x45vqcsjvpqhwsnd9sfn2bfb30v31335r"; depends=[pyinit robustbase rrcov]; }; - RobinHood = derive2 { name="RobinHood"; version="1.6.2"; sha256="0sqqsakqg05dc7g0l1ypx5xkvy5bnk7m4bdpcfxgbshry7402kh3"; depends=[dplyr httr jsonlite lubridate magrittr profvis uuid]; }; + RobStatTM = derive2 { name="RobStatTM"; version="1.0.5"; sha256="192acs7fwkw760d58s0byd5zk3j0gysa158wa2ygfkifzwbagc89"; depends=[pyinit robustbase rrcov]; }; + RobinHood = derive2 { name="RobinHood"; version="1.6.5"; sha256="0j54dhb6bss9dkkphfs18mmnk7n0qmxzykch1ivqqr4m8gbq3x8r"; depends=[dplyr httr jsonlite lubridate magrittr profvis uuid]; }; Robocoap = derive2 { name="Robocoap"; version="0.1-1"; sha256="0aj6iv85a1zfaknjhrzf6lnf0qn726dvnj4dywg9nii1kkqrkq2w"; depends=[data_table igraph markovchain tm]; }; RobustAFT = derive2 { name="RobustAFT"; version="1.4-5"; sha256="1i119qqlavfj7k0srb8fbbyy2nhsjv9rgrni854liizr9m51cgac"; depends=[robustbase survival]; }; RobustBF = derive2 { name="RobustBF"; version="0.2.0"; sha256="137lsk72sx29lhkc1s698k015vvbmdzb23i8pnlk5204bjfqzch8"; depends=[]; }; @@ -4603,6 +4473,7 @@ in with self; { RobustGaSP = derive2 { name="RobustGaSP"; version="0.6.4"; sha256="04l6glx7ys4v3z96h0sfcxfcdnq5aj5z7qyxljgjal91rgxbmn9j"; depends=[nloptr Rcpp RcppEigen]; }; RobustLinearReg = derive2 { name="RobustLinearReg"; version="1.2.0"; sha256="06137f516gyj64qdmwby7m1xnvj4hxzpqj454jn0xcinvl89380w"; depends=[]; }; RobustRankAggreg = derive2 { name="RobustRankAggreg"; version="1.1"; sha256="1pslqyr1lji1zvcrwyax4zg2s81p1jnhfldz8mdfhsp5y7v8iar3"; depends=[]; }; + Robyn = derive2 { name="Robyn"; version="3.6.3"; sha256="0irhhzqsz0m7m580b1fb1agswv3rp5x3l4iavw60xy3r79gq3bk2"; depends=[data_table doParallel doRNG dplyr foreach ggplot2 ggridges glmnet lares lubridate minpack_lm nloptr patchwork prophet reticulate rPref stringr tidyr]; }; RockFab = derive2 { name="RockFab"; version="1.2"; sha256="1b5mhfll5vmqwl4pblmclyx9604vn07jyza02rm0jcsx915ms8sc"; depends=[EBImage rgl]; }; Rodam = derive2 { name="Rodam"; version="0.1.14"; sha256="1vnr57qq56svrlixmimh4x0irprsvanj2hz95yb7fhl26kgy0mmk"; depends=[httr]; }; Rogue = derive2 { name="Rogue"; version="2.1.0"; sha256="1dr7rknvkrwkd53ah92wkrn1k3jr3bkzkp5r90v9mq0vlq9hvvn2"; depends=[ape cli fastmatch matrixStats Rdpack Rfast TreeDist TreeTools]; }; @@ -4612,17 +4483,17 @@ in with self; { RootsExtremaInflections = derive2 { name="RootsExtremaInflections"; version="1.2.1"; sha256="0qd6cmzp8fkb75ac79xbh4032vqwax7nk7d6yykpdbn0bnk2kvdi"; depends=[doParallel foreach inflection iterators]; }; Ropj = derive2 { name="Ropj"; version="0.3-2"; sha256="1c9d2paa5b2ym8qn608hyimr3fbns7nxrhk1bms87cgd8a7sqaf0"; depends=[Rcpp]; }; Rosenbrock = derive2 { name="Rosenbrock"; version="0.1.0"; sha256="0qfdyr66g244jvbnssbnj2b2ng740dr4qmillpnwl4h2hh811syv"; depends=[MASS]; }; - Rothermel = derive2 { name="Rothermel"; version="1.2"; sha256="0zrz2ck3q0vg0wpa4528rjlrfnvlyiy0x1gr5z1aax1by7mdj82s"; depends=[ftsa GA]; }; RoughSetKnowledgeReduction = derive2 { name="RoughSetKnowledgeReduction"; version="0.1"; sha256="0zn6y2rp78vay9zwijpzhjpyq1gmcsa13m9fcsxkd1p2c8g5rbmf"; depends=[]; }; RoughSets = derive2 { name="RoughSets"; version="1.3-7"; sha256="0g6nx0cak6619hxv1fq3b30xv0bdwxb776qkdj6ihig6nhkm2hkj"; depends=[Rcpp]; }; RoundAndRound = derive2 { name="RoundAndRound"; version="0.0.1"; sha256="1q3xb6y9ip8csivd0qijifxsm3h7zkwz8lxfi4ffdcgrvbl03v8q"; depends=[geometry rgl]; }; Routliers = derive2 { name="Routliers"; version="0.0.0.3"; sha256="1yrzl3gqh7xkclqdqjwy4yn7qawixpb9mzw31a6wxnrr09hzv989"; depends=[ggplot2 MASS]; }; - Rpadrino = derive2 { name="Rpadrino"; version="0.0.3"; sha256="0kkakn8cq8kb8qbxhiffwa95iqavp3a857xz6jyf0fir592psgv6"; depends=[ggplot2 ipmr magrittr mvtnorm purrr rlang rmarkdown truncdist]; }; + Rpadrino = derive2 { name="Rpadrino"; version="0.0.4"; sha256="09lg0xvibg9x4nc6pwywkcfay78dg68hva7cbwm7f9s5x46v9v13"; depends=[ggplot2 ipmr magrittr mvtnorm purrr rlang rmarkdown truncdist]; }; Rpdb = derive2 { name="Rpdb"; version="2.3"; sha256="0zy5f7bli6ppc9giwf8845mzjcv54r2sqb8hxwgbn9k6rjlszgi8"; depends=[rgl]; }; RpeakChrom = derive2 { name="RpeakChrom"; version="1.1.0"; sha256="1r8f6knpz83arz2kabizx5yyh1myg0h310qlwh8rmy88cdxi1ps9"; depends=[ggplot2 minpack_lm pracma ptw]; }; Rphylip = derive2 { name="Rphylip"; version="0.1-23"; sha256="0kpqmik4bhr74ib8yvaavr10z4v4w3li5vibdhz7lvz35jfirg9r"; depends=[ape]; }; - Rphylopars = derive2 { name="Rphylopars"; version="0.3.2"; sha256="1cpq8581lk2bzz59r4kwdpg6yc9a2qidnrz3wnky2y2z11gyy47v"; depends=[ape doBy geiger MASS Matrix phylolm phytools Rcpp RcppArmadillo]; }; + Rphylopars = derive2 { name="Rphylopars"; version="0.3.9"; sha256="05dzkpr5d7n5c3nng5flrgh0hgg16s19mx1940ilh3n4jgvz0rxq"; depends=[ape doBy MASS Matrix numDeriv phylolm phytools Rcpp RcppArmadillo]; }; Rpoet = derive2 { name="Rpoet"; version="1.1.0"; sha256="11gp4zg0wc2a21956355rkr3i3dyaabfz0z30z4phn8s7y3yqr92"; depends=[]; }; + Rpolyhedra = derive2 { name="Rpolyhedra"; version="0.5.1"; sha256="1y0p75qlkzgl4snnb310468d6dnyimnansg0smlpkqramjkqpv18"; depends=[digest futile_logger geometry git2r R6 rgl stringr XML]; }; Rpoppler = derive2 { name="Rpoppler"; version="0.1-0"; sha256="19nvv45ahp0c241p1xzlq0sq5qarqg66jw5f1anhqnfi2hi91hcm"; depends=[]; }; RprobitB = derive2 { name="RprobitB"; version="1.0.0"; sha256="0707q72j0q1w17fvbj5dw1yf3xk0a62y2654g5cj5zgglxclyd6z"; depends=[mvtnorm Rcpp RcppArmadillo viridis]; }; Rprofet = derive2 { name="Rprofet"; version="2.2.1"; sha256="150123vxdd31p96f3vsri46ryfng2xvnjgm6mdiqczg48xyfpbdp"; depends=[binr ClustOfVar ggplot2 gridExtra plyr sqldf stringr]; }; @@ -4657,12 +4528,10 @@ in with self; { Rtnmin = derive2 { name="Rtnmin"; version="2016-7.7"; sha256="0f8ii87v29v61b93hx2yxdppp3nvgnl5imp80sbb4bjsdg0mf989"; depends=[]; }; Rtrack = derive2 { name="Rtrack"; version="1.0.0"; sha256="01xgbz37rsbjkix9nlx64qyimsbbgsmyswcv4jbpqasvkp6d480q"; depends=[crayon Hmisc KernSmooth openxlsx pbapply randomForest raster readxl rgeos rjson sp]; }; Rtropical = derive2 { name="Rtropical"; version="1.2.1"; sha256="1r4585z1fna9s8whaq1w0drndg9cpqmrmqylj3m2ahfppb0xr3ic"; depends=[ape caret lpSolve lpSolveAPI RcppAlgos Rfast]; }; - Rtsne = derive2 { name="Rtsne"; version="0.15"; sha256="0v17vxizrs1msay24xl2bckfajr2c82wpqj07lyssbrq197nwdsn"; depends=[Rcpp]; }; + Rtsne = derive2 { name="Rtsne"; version="0.16"; sha256="1mgviwrqwapn8w7rq0sjxca5vi7ylgmm876ijwp22a3chbf5m82j"; depends=[Rcpp]; }; Rttf2pt1 = derive2 { name="Rttf2pt1"; version="1.3.10"; sha256="1fp1y0kxa5xg8w0dplm12wfm8h78az4k6ql1758wwhb3d17np241"; depends=[]; }; - RtutoR = derive2 { name="RtutoR"; version="1.2"; sha256="19wmi30b5i6zj673d76gxl6j0k3ppfyl5fqrcs0dwmmadrrvbajq"; depends=[colourpicker devtools dplyr DT FSelector ggplot2 ggthemes officer plotly rlang rmarkdown shiny shinyBS shinydashboard shinyjs tidyr]; }; Rtwalk = derive2 { name="Rtwalk"; version="1.8.0"; sha256="0zxf66lsfq8by40flv34xzd5yy0wa1ah9li1d0h7f0yh9nbwhxl5"; depends=[]; }; - Runiversal = derive2 { name="Runiversal"; version="1.0.2"; sha256="0667mspsjydmxi848c6wsf14gz72bmdj9b3lilma92b7fhqnv7ai"; depends=[]; }; - Runuran = derive2 { name="Runuran"; version="0.35"; sha256="15yndyw3rlxkb1mqq8db5csc6xl1zjyhrgzgx4b7iln59l3dgwfr"; depends=[]; }; + Runuran = derive2 { name="Runuran"; version="0.36"; sha256="0m4vv3yc6rwrl6ijshrc7f8n43s2f62dvasylwcs6ka3wm09lmb3"; depends=[]; }; Rvcg = derive2 { name="Rvcg"; version="0.21"; sha256="13b3l72ii7ndzmglf48xz1lm7kkpsca2q6148ihgbrpnv9n0w5r1"; depends=[Rcpp RcppArmadillo RcppEigen]; }; Rvmmin = derive2 { name="Rvmmin"; version="2018-4.17.1"; sha256="0kl1h4mlvb1bngb40r3dhrjkpnh3lsqddis65hbjzm2pzz20l02m"; depends=[optextras]; }; Rvoterdistance = derive2 { name="Rvoterdistance"; version="1.1"; sha256="16il36hkq1j6gyl5d8bx5khiiv6fy2m8vkhwiaaiqsliw2sspy4j"; depends=[Rcpp]; }; @@ -4671,7 +4540,7 @@ in with self; { Rwhois = derive2 { name="Rwhois"; version="1.0.9"; sha256="0jf7byg5ah4djj4b3l0760x9bk9yh6b23aa3w0q1cqlx4j9drf2w"; depends=[stringr]; }; Rwofost = derive2 { name="Rwofost"; version="0.8-3"; sha256="1x6ia49xrdqcxilq12g47gd00smm5jdrq7xavndd3dcnvl1nqk1y"; depends=[meteor Rcpp]; }; Rwordseg = derive2 { name="Rwordseg"; version="0.3-2"; sha256="10jhfalh45rrcm76hwz4b5yl408ndx2wkr0i3q1avx6z6i45d8s6"; depends=[HMM tmcn]; }; - Rwtss = derive2 { name="Rwtss"; version="0.9.1"; sha256="0ihpn96l0bj34ph747q7rfq78sbjjb4hhdjr2a7agc97rrggcr94"; depends=[assertthat dplyr geosphere ggplot2 httr jsonlite lubridate magrittr purrr reshape2 stringr tibble zoo]; }; + Rwtss = derive2 { name="Rwtss"; version="0.9.2"; sha256="0lxjzznigk4i8lzga88m0i6x2j5c5q79rvs5knd762ycfxwlmx6w"; depends=[assertthat dplyr geosphere ggplot2 httr jsonlite lubridate magrittr purrr reshape2 stringr tibble zoo]; }; RxCEcolInf = derive2 { name="RxCEcolInf"; version="0.1-5"; sha256="01n74xnhz1fdvb63g0lxkzsdp1frspin4a764l358immjivdrx2v"; depends=[coda lattice MASS MCMCpack mvtnorm]; }; RxODE = derive2 { name="RxODE"; version="1.1.5"; sha256="055g910dwn3v64mqqaidxhk4n6kwfyq3qpvp1grppzz50a0sz2zj"; depends=[assertthat backports BH checkmate cli dparser ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo RcppEigen rex sitmo StanHeaders sys]; }; RxnSim = derive2 { name="RxnSim"; version="1.0.3"; sha256="0fi4aic2brfbl6rsnnfwqq7l8ygvlmr98w0v749l3djpgn7sfrig"; depends=[data_table fingerprint rcdk rJava]; }; @@ -4682,7 +4551,7 @@ in with self; { SACOBRA = derive2 { name="SACOBRA"; version="1.2"; sha256="1v45l56vifkg3v2bfhk3kfg4fn0dfvrjcgy13zzymm8blr7vazi5"; depends=[mgcv R6 testit]; }; SADEG = derive2 { name="SADEG"; version="1.0.0"; sha256="02ilykbdanx1isbd80c43hqpzkckq6dg40y0rklcnck6v96qky3n"; depends=[]; }; SADISA = derive2 { name="SADISA"; version="1.2"; sha256="0yn7f360wl5ykys5zln159xh2h8bx7zb5ddwhv1migjlqry506hp"; depends=[DDD pracma]; }; - SAEval = derive2 { name="SAEval"; version="0.1.3"; sha256="02zdxk35f49px9z4hdn09x4v0jxyjzb48kk02w112faf86b3gvmb"; depends=[car ggplot2 ggspatial lmtest]; }; + SAEval = derive2 { name="SAEval"; version="0.1.4"; sha256="04fl31cgv2y2511xagn7wx8z6qvrwmakcqrdlqrcryw4qx7pfq5z"; depends=[car ggplot2 ggspatial lmtest]; }; SAFARI = derive2 { name="SAFARI"; version="0.1.0"; sha256="10fmav9dbq5kbgy8gjsp3561vi46bjvkh2wqjs39vx5z8x1ml7i3"; depends=[caTools EBImage lattice png]; }; SAFD = derive2 { name="SAFD"; version="2.1"; sha256="078ki9wrmcf80bwhx4d56gas79xrc17a0081i13yxvjqn6w7f7jd"; depends=[]; }; SAGMM = derive2 { name="SAGMM"; version="0.2.4"; sha256="18ig7ncmrfs5cyc28xpbqk9zjhwqfp7gwix7y2v1j4j2wbdc2hzs"; depends=[lowmemtkmeans mclust MixSim Rcpp RcppArmadillo]; }; @@ -4693,14 +4562,12 @@ in with self; { SAMGEP = derive2 { name="SAMGEP"; version="0.1.0-1"; sha256="01f460vk60sl3f9cg2pqcpi5r2rayjhgsp73w1ik1g4rhrs4bl9s"; depends=[abind doParallel foreach mvtnorm nlme nloptr pROC Rcpp RcppArmadillo]; }; SAMM = derive2 { name="SAMM"; version="1.1.1"; sha256="175jk3s9w68ccw1h019380lp9cajfsy3zigcnplp87pcn3qg7x2i"; depends=[Rcpp RcppArmadillo]; }; SAMTx = derive2 { name="SAMTx"; version="0.3.0"; sha256="18r03w74fcra3c0xa76jnkkms9pjirdmgb2k1dnz7symqf9cvc5l"; depends=[BART]; }; - SAMUR = derive2 { name="SAMUR"; version="0.6"; sha256="0iyv7ljjrgakgdmpylcxk3m3xbm2xwc6lbjvl7sk1pmxvpx3hhhc"; depends=[Matching]; }; - SAMURAI = derive2 { name="SAMURAI"; version="1.2.1"; sha256="02fipbjcsbp2b2957x6183z20icv1yly2pd1747nyww9bmpa7ycm"; depends=[metafor]; }; - SAMtool = derive2 { name="SAMtool"; version="1.2.6"; sha256="14r6mpcq77xlcj5dzffi5kf9bcdw84jml534049y5kndnipgs7da"; depends=[corpcor dplyr gplots MSEtool RcppEigen rmarkdown snowfall TMB vars]; }; + SAMtool = derive2 { name="SAMtool"; version="1.3.1"; sha256="1mfinxk9qby7b41vxj926a7i15nl5j6gmysbhmh5vks7fvkyydnf"; depends=[corpcor dplyr gplots MSEtool RcppEigen rmarkdown snowfall TMB vars]; }; SAPP = derive2 { name="SAPP"; version="1.0.8"; sha256="1lb148s8rdx1phmx8ihncgb45iqxzracxznys7zyzs8qcf6hm5wq"; depends=[]; }; SAR = derive2 { name="SAR"; version="1.0.3"; sha256="1cnf0hsq82lzssvz5xs2abvnrjxda0g6mjx70a1j223zdwjqmw64"; depends=[AzureRMR AzureStor dplyr httr jsonlite Matrix R6 Rcpp RcppArmadillo RcppParallel]; }; SARP_compo = derive2 { name="SARP.compo"; version="0.1.5"; sha256="17pvgc7alv59lxnrz1rj5gdl2lg90jxfwkyn8j802n22r3bmzcsm"; depends=[car igraph]; }; SARP_moodle = derive2 { name="SARP.moodle"; version="0.8.7"; sha256="1yq1rvalibdja12461nivaifhdip3w0qzm0z99zcl0h13r6zl55r"; depends=[base64enc]; }; - SAScii = derive2 { name="SAScii"; version="1.0"; sha256="0nq859xmrvpbifk8q1kbx3svg61rqdg8p8gr1pn85fr0j3w7h666"; depends=[]; }; + SAScii = derive2 { name="SAScii"; version="1.0.1"; sha256="04cns0mvff7crbsv8vld3qwjrj280jzbx25m9d03l9wa4ba2djny"; depends=[]; }; SASmarkdown = derive2 { name="SASmarkdown"; version="0.4.3"; sha256="0jc21ylflvv4snik13731acxh9zw79s7hpswk58p2wzvavq8k9zn"; depends=[knitr]; }; SASmixed = derive2 { name="SASmixed"; version="1.0-4"; sha256="0491x4a3fwiy26whclrc19alcdxccn40ghpsgwjkn9sxi8vj5wvm"; depends=[]; }; SAVER = derive2 { name="SAVER"; version="1.1.2"; sha256="1s1kw8idkaj7j90fw4qn9k0wd4vz0sblsk06ry6lm4afcar0p158"; depends=[doParallel foreach glmnet iterators Matrix]; }; @@ -4720,13 +4587,13 @@ in with self; { SCBiclust = derive2 { name="SCBiclust"; version="1.0.0"; sha256="1wrlzgavri6g7s948775nfls83b8fa5mx3xvbvc8kmbrvdwms6cq"; depends=[sigclust sparcl]; }; SCBmeanfd = derive2 { name="SCBmeanfd"; version="1.2.2"; sha256="045498q71zqgcg8p3665vwd99a8ybf21y0sa7y8316zw66wb1caz"; depends=[boot KernSmooth]; }; SCCI = derive2 { name="SCCI"; version="1.2"; sha256="08ibazxiqmkm3n9g8bfp0cfq26zmg6x2fxb064g3z05nczsf72db"; depends=[Rcpp]; }; - SCCS = derive2 { name="SCCS"; version="1.5"; sha256="0ii549y9l59gcdwgb40vx98yxa3hj9rqjwsbax88wjf5adw7c788"; depends=[corpcor dummies fda gnm R_methodsS3 survival]; }; SCEM = derive2 { name="SCEM"; version="1.1.0"; sha256="1fxxkv965gb0wq06rclv05xxlzk8p9l8hzbnqcf0nbbymyn73fqr"; depends=[devtools mathjaxr]; }; SCEPtER = derive2 { name="SCEPtER"; version="0.2-4"; sha256="1098pvq3a7k9czxapszkakc8lr9sfvj7a643iivil5fcqfk0j50r"; depends=[MASS]; }; SCEPtERbinary = derive2 { name="SCEPtERbinary"; version="0.1-1"; sha256="0rab0widfndx94dn1nchhs06q0d57vq2n3xy79p130l9rgp9v489"; depends=[MASS SCEPtER]; }; SCEnt = derive2 { name="SCEnt"; version="0.0.1"; sha256="0nyx0j0ab8wzl9mm5ib0p2zxq9xis2p850b2w3jdm9xn3ncm6wl1"; depends=[entropy tibble]; }; SCGLR = derive2 { name="SCGLR"; version="3.0"; sha256="10hsvcjgsycap6wkp06snp2zab1ppsp78kyncpbjnm3vp84qm0nz"; depends=[ade4 expm Formula ggplot2 Matrix pROC]; }; SCI = derive2 { name="SCI"; version="1.0-2"; sha256="1jvzkdv15ifgf6a3zjfzzcgw2y2vg0wp7yhiamiaqp8xkm142w49"; depends=[fitdistrplus lmomco]; }; + SCIBER = derive2 { name="SCIBER"; version="0.1.1"; sha256="1r6shb4v82wx3rfav0amljn93wwp9qw0f8xzi03pjl80j1n3yic6"; depends=[dplyr]; }; SCINA = derive2 { name="SCINA"; version="1.2.0"; sha256="1gv9widjwvk5j535r1zx6f41ylpa2r4168ya580llgblx85z402d"; depends=[gplots MASS]; }; SCMA = derive2 { name="SCMA"; version="1.3.1"; sha256="0j0np99mcr8vgpcg664769gdb3rxm665h4jgj3zplihbh5ihxfj1"; depends=[]; }; SCOR = derive2 { name="SCOR"; version="1.1.1"; sha256="0srkn72g1v7hwms68pjmq5sj562blqn27gi628q6q6zlirbmfb9g"; depends=[doParallel foreach iterators]; }; @@ -4734,41 +4601,34 @@ in with self; { SCORNET = derive2 { name="SCORNET"; version="0.1.1"; sha256="13aibikvrc3ril4gqki4fk4y7ha85bniqabmaifzbr1dw5xy2wxm"; depends=[doParallel foreach Matrix pracma Rcpp RcppArmadillo survival]; }; SCORPIUS = derive2 { name="SCORPIUS"; version="1.0.8"; sha256="0a9gl5fk3v1nmh5vd228pp2six9r6qy296w5xzhcc5by706r5xq7"; depends=[dplyr dynutils dynwrap ggplot2 lmds MASS Matrix mclust pbapply pheatmap princurve purrr ranger RANN RColorBrewer reshape2 tidyr TSP]; }; SCOUTer = derive2 { name="SCOUTer"; version="1.0.0"; sha256="1s0mmzfz0zhr5v4wagcjwdba8a5f57xr26vwml92dnw6lai37pj4"; depends=[ggplot2 ggpubr]; }; - SCPME = derive2 { name="SCPME"; version="1.0"; sha256="0yhsaaa349wbrswcvp7w8c52wzp7rs3528rs4wqa8b3r3fh983mh"; depends=[doParallel dplyr foreach ggplot2 Rcpp RcppArmadillo RcppProgress]; }; SCRIP = derive2 { name="SCRIP"; version="1.0.0"; sha256="1cv8443y2s67q3krsyj7r2d1vqv01w8xr0iz8dz4kijmhksyg7ng"; depends=[BiocGenerics BiocManager checkmate crayon edgeR fitdistrplus knitr mgcv S4Vectors Seurat SingleCellExperiment splatter SummarizedExperiment]; }; SCRSELECT = derive2 { name="SCRSELECT"; version="1.3-3"; sha256="118vwnd5gggvdhq7fbs0553l84vh5mhiag41q4svprd7p0pqd9hd"; depends=[mvtnorm]; }; SCRT = derive2 { name="SCRT"; version="1.3.1"; sha256="0wkxc22hv08riivjl09lhxvffqxxdy4xnvdmc2y69gssyinkbln1"; depends=[]; }; SCVA = derive2 { name="SCVA"; version="1.3.1"; sha256="1gdicpnbr8bdgrbwwslpwpzw2adpp94p8nhsrkdx0bjlpfhd4g9h"; depends=[ggExtra ggplot2 plotly scales]; }; SCperf = derive2 { name="SCperf"; version="1.1.1"; sha256="1kqi3sv9ds58l20pdcnjrrbf7fin82j73yqj5rbx4kjdw560ylb2"; depends=[]; }; SCtools = derive2 { name="SCtools"; version="0.3.1"; sha256="0vsv9ipz0ys8nrvg7rwr23svqlc5lvjpa6yss79rnjzxarjcyjjz"; depends=[cvTools dplyr furrr future ggplot2 magrittr purrr stringr Synth]; }; - SDALGCP = derive2 { name="SDALGCP"; version="0.4.0"; sha256="0az11v9dj3pwl5q2kr2apac06b5hg0msi5r17qrcik1d65k18hm0"; depends=[geoR maptools mapview Matrix pdist PrevMap progress raster sp spacetime spatstat spatstat_geom splancs]; }; SDAR = derive2 { name="SDAR"; version="0.9-55"; sha256="1a1dy4wpzhfaqxv4x8knazh4kjx042rnkmvxf62r6wkgbfvq4r6b"; depends=[grImport2 linbin readxl]; }; SDAResources = derive2 { name="SDAResources"; version="0.1.1"; sha256="13zb8sx7913wpj1jhi5sb0ps8fgzxfvjx75p218n166w54rxjqjs"; depends=[]; }; SDCNway = derive2 { name="SDCNway"; version="1.0.1"; sha256="0zmjc3xh4qvwyrq4ma2k6q08f4ny4iqnl5a640pj17jk8awzwbg0"; depends=[dplyr ggplot2 MASS plyr Rdpack]; }; SDD = derive2 { name="SDD"; version="1.2"; sha256="0wzgm1hgjv5s00bpd7j387qbvn5zvyrrd5fr2rgyll4cw9p4sd33"; depends=[Hmisc rgl rpanel sm tseries]; }; - SDDE = derive2 { name="SDDE"; version="1.0.1"; sha256="14vql1bypn409w9xcx1jdzff6apiagcz2wng3y24h3mk7yjv9bzy"; depends=[doParallel foreach igraph iterators]; }; SDEFSR = derive2 { name="SDEFSR"; version="0.7.22"; sha256="10rxq2y7a9rbzgl5s5fdh93jm4w5kqbyyflw5xfsdwymjj9p4b7m"; depends=[foreign ggplot2 shiny]; }; - SDLfilter = derive2 { name="SDLfilter"; version="2.2.0"; sha256="150rc426q8axf3f1i50k1bjdbac9mcm8yb6zqg6b82qhf2hbb4c4"; depends=[data_table dplyr emmeans ggmap ggplot2 ggsn gridExtra lubridate maps plotKML plyr pracma raster sp trip]; }; SDMPlay = derive2 { name="SDMPlay"; version="2.0"; sha256="1qdvpa57p4p3949rjmvvvz41a3hm3jb34dnn8s2pi04rzrjkys0f"; depends=[dismo raster]; }; SDMtune = derive2 { name="SDMtune"; version="1.1.5"; sha256="1nfxm1g7kyvn7j7zkjwsn6bi5xz77bjna1dcbak9k8xnk627kxjw"; depends=[dismo gbm ggplot2 jsonlite maxnet nnet progress randomForest raster Rcpp rlang rstudioapi stringr whisker]; }; SDT = derive2 { name="SDT"; version="1.0.0"; sha256="1jwpfd1pnzy9wcl90qv5bgwi19shsw9064dvml9zwbif8yw8dzjj"; depends=[quadprog]; }; - SDaA = derive2 { name="SDaA"; version="0.1-3"; sha256="0z10ba4s9r850fjhnrirj2jgnfj931vwzi3kw9502r5k7941lsx0"; depends=[]; }; + SDaA = derive2 { name="SDaA"; version="0.1-5"; sha256="1gs29jaj46i2bhbnpa0s6bhdrylz1s6wnif5cyc5m7xl19s413gb"; depends=[]; }; SE_EQ = derive2 { name="SE.EQ"; version="1.0"; sha256="09fqx2rcqpiv072l6gqgfz9pdhas98q4kkkm7m4y28k13q2gicgl"; depends=[MASS]; }; SEA = derive2 { name="SEA"; version="2.0.1"; sha256="03iqvs95v2q252dl62z39i0nwg8n44g1p9ljbmb1nx6zq98fd7bw"; depends=[data_table doParallel foreach KScorrect MASS shiny]; }; SEAGLE = derive2 { name="SEAGLE"; version="1.0.1"; sha256="1j5wjjw7fl2m4h9brg8dyahf1vmn9wgc7jaajaz6z1xqm6fc0d9k"; depends=[CompQuadForm Matrix]; }; SEAsic = derive2 { name="SEAsic"; version="0.1"; sha256="1mg01sag6n1qldjvmvbasac86s7sbhi4k99kdkav2hdh6n9jg467"; depends=[]; }; SECFISH = derive2 { name="SECFISH"; version="0.1.7"; sha256="0yd9k6anz9g4psg5kh1bhp0lr1i4y7in1m0mxk4qp14nl1zqy4fy"; depends=[ggplot2 Hmisc optimization]; }; - SECP = derive2 { name="SECP"; version="0.1-4"; sha256="0a4j0ggrbs0jzcph70hc4f5alln4kdn2mrkp3jbh321a6494kwl1"; depends=[SPSL]; }; + SECP = derive2 { name="SECP"; version="0.1.5"; sha256="01nq30ap06n2inqb59qmv4wkc9wh1hdkyfblqs0inn55842d009z"; depends=[SPSL]; }; SEERaBomb = derive2 { name="SEERaBomb"; version="2019.2"; sha256="0rlah68jbaw4qbqq5rnlrm6m9ckz7igbsay6iq1yvk4gy24p9bfh"; depends=[DBI demography dplyr forcats ggplot2 labelled LaF mgcv openxlsx plyr purrr Rcpp readr reshape2 rgl RSQLite scales stringr survival tibble tidyr WriteXLS]; }; SEIRfansy = derive2 { name="SEIRfansy"; version="1.1.1"; sha256="0xnyrsv04n22s71v1wajwpccwk78q27fgry9dhxxzw8a6yd082x8"; depends=[arm DescTools dplyr ggplot2 ggpubr knitr magrittr patchwork pbapply rlang scales]; }; SEL = derive2 { name="SEL"; version="1.0-3"; sha256="0nkr6m4aq4i0vq19v04lfkjmmjii1dfqsj1mfwagwsw6ain1jarr"; depends=[lattice quadprog]; }; SELF = derive2 { name="SELF"; version="0.1.1"; sha256="1yafjhxwsanr33dqy7w9x61ghldr29s8k6h68idq6nnfb77ghjyx"; depends=[bnlearn CompareCausalNetworks data_table Rcpp xgboost]; }; SEMID = derive2 { name="SEMID"; version="0.4.0"; sha256="1888l4m7d944j4cmh6l19fjmrsh6r6xlfwjzpvyanxd769xmyfzc"; depends=[igraph R_methodsS3 R_oo R_utils]; }; - SEMgraph = derive2 { name="SEMgraph"; version="1.1.0"; sha256="11r3iqwascq0lwdn2mazanhfljxvqzahqpzzqbska1ww3ywwx5yy"; depends=[boot cate corpcor dagitty diffusr flip gdata ggm GGMncv glmnet graph igraph lavaan leaps Matrix pbapply protoclust RcppEigen Rgraphviz]; }; - SEMrushR = derive2 { name="SEMrushR"; version="0.1.0"; sha256="19prwbh429ra69nz3nx4vzqmb46xssci74rk9mhpnzbi52ycg5gd"; depends=[]; }; - SEMsens = derive2 { name="SEMsens"; version="1.0.2"; sha256="18qcwhn1j9ci6338spwgym9g8590p5nc5sdvnpby3xrs9wv76nqs"; depends=[lavaan]; }; - SETPath = derive2 { name="SETPath"; version="1.0"; sha256="1dpgmki0dhph13h1fd3mbf308746wccgfz5g5gdm7bwbjnmjzd98"; depends=[]; }; - SEchart = derive2 { name="SEchart"; version="0.1"; sha256="19gqcd6xzwg37nzc67p88ip4i0v2f59ds85xfw9qq8lybvdm76k2"; depends=[JM]; }; + SEMgraph = derive2 { name="SEMgraph"; version="1.1.1"; sha256="0b5zdszyp3d5v54lkq8msgdim76f0w9gcw12v3swx1ncb3qyvvmd"; depends=[boot cate corpcor dagitty diffusr flip gdata ggm GGMncv glmnet graph igraph lavaan leaps Matrix pbapply protoclust RcppEigen Rgraphviz]; }; + SEMsens = derive2 { name="SEMsens"; version="1.0.3"; sha256="0z01zy326qh3ads1ydg6p7vn674ry4lfldxrpxvi4i97d9i5qivr"; depends=[lavaan]; }; SEofM = derive2 { name="SEofM"; version="0.1.0"; sha256="0662f4ayr05h33myxbfal682fxfwpl3a94kv4bzc8hil9bcqcznf"; depends=[]; }; SEset = derive2 { name="SEset"; version="1.0.1"; sha256="127z85m95xn46s7lk3sdzrs73mi7pa2smx9r80fnl678f2kyz6lm"; depends=[combinat Matrix Rdpack]; }; SFS = derive2 { name="SFS"; version="0.1.4"; sha256="1pig64pj30yyfzyv97f74gshw4lnklrx0npp4da3absk6anb3iv7"; depends=[Rcpp RcppArmadillo]; }; @@ -4784,14 +4644,14 @@ in with self; { SHT = derive2 { name="SHT"; version="0.1.6"; sha256="1pxw2fbdzczx33w4fgkikxqchwimwc7rxq5bxinf230a94nl4qwr"; depends=[fastclime pracma Rcpp RcppArmadillo Rdpack]; }; SI = derive2 { name="SI"; version="0.2.0"; sha256="0i6kpaw5yk39skm77nf56ai25clkparz3l8qx0223jrmdqbf97b7"; depends=[]; }; SIBER = derive2 { name="SIBER"; version="2.1.6"; sha256="1ymr1y2c984nnjkj5nwc1mi4ixdwg8d191nn58i0dvckzm922z80"; depends=[dplyr ggplot2 hdrcde magrittr mnormt purrr rjags spatstat spatstat_geom spatstat_utils tidyr]; }; - SIBERG = derive2 { name="SIBERG"; version="2.0.2"; sha256="0wfx1dpjd09gb736sm2xhrkba26nwnzn5x575h39n2g33jwqqy2r"; depends=[mclust]; }; - SID = derive2 { name="SID"; version="1.0"; sha256="1446zy4rqbw0lpyhnhyd06dzv238dxpdxgmsk34hqv7g3j7q5h1w"; depends=[igraph Matrix pcalg RBGL]; }; + SIBERG = derive2 { name="SIBERG"; version="2.0.3"; sha256="1d8kx5m86qil50d8fhwn7lwaigdnppzk0cwyh4hv54lwffpclnki"; depends=[mclust]; }; SIDES = derive2 { name="SIDES"; version="1.16"; sha256="0hp0dkdmc5srqjbpvcq2ynwzrfdx06xn4s4a7a3wlssmn4indj69"; depends=[doParallel foreach MASS memoise multicool nnet survival]; }; SIGN = derive2 { name="SIGN"; version="0.1.0"; sha256="1ak4zv5a50iknrxpfw1iffn8gv8mc0rz2gk96nzky9zx6li5drhk"; depends=[GSVA survcomp survival]; }; SIHR = derive2 { name="SIHR"; version="0.2.0"; sha256="1km82hrwsdz0chkpsad7bylnkcc7pwc7j0s9ng2hd0w5m85cigc4"; depends=[CVXR glmnet Matrix qpdf Rdpack scalreg]; }; SILGGM = derive2 { name="SILGGM"; version="1.0.0"; sha256="1lhmisgg2zbfksl7czz0fqag3732gkjc44n615ipxbdi2pvnc7m0"; depends=[glasso MASS Rcpp reshape]; }; SILM = derive2 { name="SILM"; version="1.0.0"; sha256="1iaivpdx18djfm5dqak0q9kfl1xfrnx3gk5x9a4y53h1d7jhl9p6"; depends=[glmnet hdi scalreg SIS]; }; SIMEXBoost = derive2 { name="SIMEXBoost"; version="0.1.0"; sha256="0gxw8xb2hvsizawfd863c268q5wq1cdsmdsand5iys2b9gry1pmq"; depends=[MASS]; }; + SIMMS = derive2 { name="SIMMS"; version="1.3.2"; sha256="1pdbgqndnhgyfcwgr5ijnnmn64cwlalwbanb2grkm7h80bpql3lw"; depends=[doParallel foreach glmnet MASS randomForestSRC survival]; }; SIMPLE_REGRESSION = derive2 { name="SIMPLE.REGRESSION"; version="0.1.4"; sha256="0psmkkfm3i4wffnplm3mclpvkd28lb6kfj8idspmcpvp7414xl3m"; depends=[nlme]; }; SIN = derive2 { name="SIN"; version="0.6"; sha256="0vq80m3vl8spdnlkwvwy0gk3ziyybqzjp3scnfdcpn942ds7sgg9"; depends=[]; }; SIPDIBGE = derive2 { name="SIPDIBGE"; version="0.1.6"; sha256="1g8sz5jcndx33456cxciq85lq1jf8sbny649rzq1figbwvcz83ih"; depends=[cli COVIDIBGE PNADcIBGE png PNSIBGE POFIBGE purrr rstudioapi tibble]; }; @@ -4801,9 +4661,9 @@ in with self; { SISIR = derive2 { name="SISIR"; version="0.1-3"; sha256="093a202byak1839d6949yv4f0i43jlcvfmzd41qy4l0i7qdhvr72"; depends=[doParallel expm foreach glmnet Matrix RSpectra]; }; SITH = derive2 { name="SITH"; version="1.1.0"; sha256="1626nsbnz4fh49wymxm1cqb0nrfyxhmh9fmdxr62dzj5b53amknc"; depends=[Rcpp scatterplot3d]; }; SIfEK = derive2 { name="SIfEK"; version="0.1.0"; sha256="037ps6yfy7w6i8vm0b78c8w9kdmw312dl5nc2qz86rfk8kjg7w27"; depends=[MASS numDeriv ramcmc smfsb]; }; - SK = derive2 { name="SK"; version="1.1"; sha256="19yg7yc2k4zz29bh42lw2jpjvkdj33f26xkfs8vz8lpp98yjf2vx"; depends=[FitAR GD MASS RColorBrewer rgeos rtop sp]; }; SKAT = derive2 { name="SKAT"; version="2.2.4"; sha256="1gq8zy3rrpsx09bgli30cx32k73yn4jzqig250s8rl8aasb9hd1b"; depends=[Matrix RSpectra SPAtest]; }; SKNN = derive2 { name="SKNN"; version="3.0"; sha256="1zcsyc8x4cfkj5im9hsv091f2hca3y09fra3y0rl19jiwzvpjgy9"; depends=[]; }; + SLBDD = derive2 { name="SLBDD"; version="0.0.4"; sha256="06v2id6rqdn9gcjmnpixdfxgh7wvqx9xpna6lnciqz974k8lblsb"; depends=[cluster corpcor fGarch forecast glmnet gsarima imputeTS MASS Matrix matrixcalc MTS rnn TSclust tsoutliers]; }; SLC = derive2 { name="SLC"; version="0.3"; sha256="0l0y1sjj0glsb7vwla99ijclcgaq2y85bgz1wqm348n4shsmm2rs"; depends=[]; }; SLDAssay = derive2 { name="SLDAssay"; version="1.8"; sha256="04ykj7s9kpvg5bmf7x16154kfpdy45b7y7hhyh31sxlscv7c5bbp"; depends=[]; }; SLEMI = derive2 { name="SLEMI"; version="1.0.1"; sha256="07bsy0v8grx1l5837jr8mdab08521kxivhwr59q3s0v6f08683yd"; depends=[caret corrplot doParallel e1071 foreach ggplot2 ggthemes gridExtra Hmisc nnet reshape2 stringr]; }; @@ -4827,20 +4687,18 @@ in with self; { SMLoutliers = derive2 { name="SMLoutliers"; version="0.1"; sha256="10frs7wcyn368m7fvw2f1cyd0xqr6sv5jziixnyvr8q5fadyl2p0"; depends=[]; }; SMM = derive2 { name="SMM"; version="1.0.2"; sha256="1g1c7ssdcnzgv6b221ya1xrypg2ksahc7qj1042j8nlx5wg29cld"; depends=[DiscreteWeibull seqinr]; }; SMMA = derive2 { name="SMMA"; version="1.0.3"; sha256="1nwxp447m1igm7dlxw5kqw472f8470svwx9awjp2d84m66wplinr"; depends=[Rcpp RcppArmadillo]; }; - SMME = derive2 { name="SMME"; version="1.0.1"; sha256="1iklrj9smjmxjjip8v64ph6gisg5821glck26cy7s15pcj5mdbz5"; depends=[Rcpp RcppArmadillo]; }; + SMME = derive2 { name="SMME"; version="1.1"; sha256="0xgiq222hrz2y7r2blk7jjan92bhxbsdpcsmxkadiw7xd4p44h5c"; depends=[Rcpp RcppArmadillo]; }; SMMT = derive2 { name="SMMT"; version="1.1.0"; sha256="1zjvdjz75qhfdm4maiq2rw9bzqa2xls15vpr3556iba5aq4hysv7"; depends=[curl dplyr rvest tibble XML xml2]; }; SMNCensReg = derive2 { name="SMNCensReg"; version="3.0"; sha256="06542jacy74mw6ic0i1ml09pn45sll96bya7dqja6bg9yp0m6bvr"; depends=[Matrix PerformanceAnalytics]; }; SMPracticals = derive2 { name="SMPracticals"; version="1.4-3"; sha256="0zxq84f9i3b86xx6msb25b61gyj9k09iab2b7wg4d93yas9qzayf"; depends=[ellipse MASS nlme survival]; }; - SMR = derive2 { name="SMR"; version="2.0.1"; sha256="0qy56fmismcjklpf29ic2gi1g8ajdjpxsl0akb9cqzyisyf641ia"; depends=[]; }; + SMR = derive2 { name="SMR"; version="2.0.2"; sha256="1lds6sp9szlrzkfxp3q24g4y4hd75qp4439hrn2k4hzsz84s7g3y"; depends=[]; }; SMUT = derive2 { name="SMUT"; version="1.1"; sha256="029ishj3jfq957bbkb2xw4jj0qpm4dasb8vpdik43pvd670mgq5s"; depends=[MASS Rcpp RcppEigen SKAT]; }; - SMVar = derive2 { name="SMVar"; version="1.3.3"; sha256="17wr4lixy3p32gr4jq02d7zsr88yrbddjsvynzdsdrwbxf4mwqhp"; depends=[]; }; + SMVar = derive2 { name="SMVar"; version="1.3.4"; sha256="1mh15iggzbd7ip15pkwzmiy8p712cvvns5pgdyw1pvkcvbvkxsma"; depends=[]; }; SNFtool = derive2 { name="SNFtool"; version="2.3.1"; sha256="05hz230aq5wbzhknxzr4iqv3nqjhbpf66n6bp1rc5h2jgz2yfbwq"; depends=[alluvial ExPosition]; }; - SNPMClust = derive2 { name="SNPMClust"; version="1.3"; sha256="1gad1jfla4qpczh8vpwyss5cckzgpffsyj0d71r8drbspr4i3r90"; depends=[MASS mclust]; }; - SNPannotator = derive2 { name="SNPannotator"; version="0.2.0.0"; sha256="080gxik9ab0n7vl7l3grmqdc63b3df8wqcr7m8bc1963x014g2cs"; depends=[data_table doParallel foreach ggplot2 httr jsonlite kableExtra openxlsx progress rmarkdown xml2]; }; + SNPannotator = derive2 { name="SNPannotator"; version="0.2.2.0"; sha256="08zrgl88i7f2a3kwvwnipksp28a8gjzlb69zdb321jqc8ly0kkdx"; depends=[data_table doParallel foreach ggplot2 httr jsonlite kableExtra openxlsx progress rmarkdown xml2]; }; SNPassoc = derive2 { name="SNPassoc"; version="2.0-11"; sha256="13njyhz4qk9kx9jv1hspzh1y8j8v8igxg9jcmlkfljvniam5cf6g"; depends=[BiocStyle Biostrings GenomicRanges ggplot2 haplo_stats IRanges mvtnorm org_Hs_eg_db plyr poisbinom S4Vectors survival tidyr TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; - SNPfiltR = derive2 { name="SNPfiltR"; version="0.1.1"; sha256="1g0hj277cfx6n21zic2n96xlrg9dhziwmvk9hh1gx1vxr6qxb2zf"; depends=[adegenet cluster ggplot2 ggridges gridExtra Rtsne vcfR]; }; + SNPfiltR = derive2 { name="SNPfiltR"; version="1.0.0"; sha256="03a6ym4pc39yb2ijyw957aisksz7m8lrpjbrnyqzndxyvdn5pgbi"; depends=[adegenet cluster ggplot2 ggridges gridExtra Rtsne vcfR]; }; SNPknock = derive2 { name="SNPknock"; version="0.8.2"; sha256="121pdgvdffj61hw8x8m76na0cg5iw5gb586q05ikw5d959mmbzrs"; depends=[Rcpp RcppArmadillo RcppProgress Rdpack]; }; - SNPmaxsel = derive2 { name="SNPmaxsel"; version="1.0-3"; sha256="0pjvixwqzjd3jwccc8yqq9c76afvbmfq0z1w0cwyj8bblrjpx13z"; depends=[combinat mvtnorm]; }; SNSchart = derive2 { name="SNSchart"; version="1.4.0"; sha256="18rpg2zkqa6bxnbq3s0hlsg4wizz6iw3vckf5z66q3awxqycabg9"; depends=[MASS]; }; SNSequate = derive2 { name="SNSequate"; version="1.3.3"; sha256="1qadhk2acpr0lkh2z37ivif9dbp7zb31lfn32ch2sb0z9pp56his"; depends=[emdbook knitr magic plyr progress statmod]; }; SNscan = derive2 { name="SNscan"; version="1.0"; sha256="1s7dxi7faih0phx5wk2xrrzhvfwicq3h2cg8x2klwbrslin973lz"; depends=[igraph poweRlaw Rmpfr]; }; @@ -4848,11 +4706,10 @@ in with self; { SOAs = derive2 { name="SOAs"; version="1.0-1"; sha256="0n66kg9zp1q8lhixn4kr5m83khanr2hdwpxy4jsx16jqg4j3f284"; depends=[combinat conf_design DoE_base FrF2 igraph lhs]; }; SOFIA = derive2 { name="SOFIA"; version="1.0"; sha256="1jlaggxa2nz2r5yb2xmf0dh5wmxfdk6xwn0l3nwsqh82vyxhp7l9"; depends=[png]; }; SOIL = derive2 { name="SOIL"; version="1.1"; sha256="0dvfh84xjzald51kmdb546par2rbjdn3nys9y9w7cvafv2lc5yj9"; depends=[brglm2 glmnet MASS ncvreg]; }; - SOLOMON = derive2 { name="SOLOMON"; version="1.0-1"; sha256="0z91wsrgdir25ks4dnirzsg4f1ngal7n40235m3w43j6y6dhkqrc"; depends=[]; }; SOMEnv = derive2 { name="SOMEnv"; version="1.1.2"; sha256="03g1c9ip0bmc5zhnzami3f525m9ic6v5gdhaxc8s7f1nxjf2fcdy"; depends=[colourpicker dplyr kohonen openair plyr rlist shiny shinycssloaders shinycustomloader]; }; SOMbrero = derive2 { name="SOMbrero"; version="1.4-1"; sha256="0b9w8xr067hz2lzvxn7xz3llzhyqynskh08rsx7d73gnm56kdcp2"; depends=[ggplot2 ggwordcloud igraph interp markdown metR scatterplot3d shiny]; }; SOP = derive2 { name="SOP"; version="1.0"; sha256="1c9haq0ds90rwhvmdicaxhzf7vz2m343491sw9qw7w7fbs4fn9fp"; depends=[MASS]; }; - SOPC = derive2 { name="SOPC"; version="0.0.2"; sha256="0j2h0jc3c7nvqgx76ycakm3a3xq95ixzvamwxd1p54kykr7c6wrf"; depends=[elasticnet]; }; + SOPC = derive2 { name="SOPC"; version="0.0.3"; sha256="1dfqra4yimkbhg1lxa3waqch515f6wvj5p2kbv1w76s82xirnwr8"; depends=[elasticnet]; }; SOPIE = derive2 { name="SOPIE"; version="1.6"; sha256="1q6991l1wldywv685dv1pkd8ma8jlx4inqr6p1fw1xr7ymm8b1q2"; depends=[ADGofTest circular]; }; SOR = derive2 { name="SOR"; version="0.23.1"; sha256="1accs4bqy080nfmgkdg7bgamdrcwcn01y6nydvvq12w3v8asdvwh"; depends=[Matrix]; }; SOUP = derive2 { name="SOUP"; version="1.1"; sha256="0k8nlvl4681cz07xjazprcc0jhknfa5hgr7w1qxxmgrp3sprr8r4"; depends=[tensor]; }; @@ -4868,6 +4725,7 @@ in with self; { SPCAvRP = derive2 { name="SPCAvRP"; version="0.4"; sha256="10bvr4lqnim40fihq495a4fy4f33pvfd7gsaqjj9bh6gy0z8y4mi"; depends=[MASS]; }; SPCDAnalyze = derive2 { name="SPCDAnalyze"; version="0.1.0"; sha256="0zaxlc4dw678s0v22ghv7mc4vqsgkcnmbxh7065w6qj9vm7pg5kz"; depends=[lme4 nlme plyr]; }; SPCompute = derive2 { name="SPCompute"; version="1.0.1"; sha256="18hcdwf78ly9nsl2r4sfvg7r9wk6q6rdgd6c5vvna8l0bmcrji6s"; depends=[Matrix]; }; + SPECIES = derive2 { name="SPECIES"; version="1.1.3"; sha256="0qh8vi522lyix61p0z1h3fja9x0lylrvg41bsv89228hia0vz3lq"; depends=[]; }; SPEDInstabR = derive2 { name="SPEDInstabR"; version="1.9"; sha256="0z27h9yl5lyayqa1wqj700kxrgyi1h13bqm3bbq8zml91dyq209c"; depends=[]; }; SPEI = derive2 { name="SPEI"; version="1.7"; sha256="0lj7d3bbik7q4di5nqc3a1rn94z2y2v9x45r1jjkvgf03frj96qd"; depends=[ggplot2 lmomco]; }; SPIAssay = derive2 { name="SPIAssay"; version="1.1.0"; sha256="0y02122lj4v95g62w84jmdjdazfz3rch133aid5sgakj2kv68cvh"; depends=[]; }; @@ -4877,9 +4735,11 @@ in with self; { SPLICE = derive2 { name="SPLICE"; version="1.1.0"; sha256="1jcw7nikla75aqfbplv2cklq19rfd8naamldvllzy2pjb879vqkk"; depends=[lifecycle SynthETIC zoo]; }; SPODT = derive2 { name="SPODT"; version="0.9-1"; sha256="01yq429a4s63855bwpn2mqjj2k3cz4187kfpi7n7qqdpdvmxz109"; depends=[rgdal sp tree]; }; SPORTSCausal = derive2 { name="SPORTSCausal"; version="1.0"; sha256="1ww1wi3kflwj1f5slfv0mfi7gbaj7y8rk1m3n15szpxb9zm8grks"; depends=[CausalImpact keras]; }; - SPOT = derive2 { name="SPOT"; version="2.8.2"; sha256="1z3hc29lk8vycrnq4kf5gqzglblgyj7ijg4sghk6vfb1apvrndsg"; depends=[DEoptim ggplot2 glmnet laGP MASS nloptr plgp plotly randomForest ranger rgenoud rpart rsm]; }; - SPOTMisc = derive2 { name="SPOTMisc"; version="1.7.0"; sha256="09gjvw0jvdn5gys41afzkdkyw0rc4lvx2w9l317wrx018l72wva6"; depends=[benchmarkme callr emoa ggsci jsonlite keras magrittr mlr OpenML plotly RColorBrewer reticulate rpart_plot sensitivity smoof SPOT tensorflow tfdatasets]; }; + SPOT = derive2 { name="SPOT"; version="2.9.52"; sha256="08jascf4wwha18xmplym4rxbd5pd3wykl1dw7w850zs6dcn2b7kg"; depends=[DEoptim ggplot2 glmnet laGP MASS nloptr plgp plotly randomForest ranger rgenoud rpart rsm]; }; + SPOTMisc = derive2 { name="SPOTMisc"; version="1.18.14"; sha256="1vjw0ngs8imla9q4l5f0zjc4gnfzi708a2zhznwkqlizdhhi8s6j"; depends=[callr dplyr GGally ggplot2 keras magrittr Metrics mlr OpenML plotly RColorBrewer reticulate rlang rpart_plot rsample sensitivity smoof SPOT tensorflow tfdatasets]; }; + SPOUSE = derive2 { name="SPOUSE"; version="0.1.0"; sha256="10p3x3862dss779jfxw1kxhs3g94zpjpvnlww1gsw1c5hxzvmqb5"; depends=[]; }; SPPcomb = derive2 { name="SPPcomb"; version="0.1"; sha256="1kn3pi3c7g7waill1grm382ixbvnc7z8pbgzqd94hxqzgkivhid7"; depends=[nleqslv]; }; + SPQR = derive2 { name="SPQR"; version="0.1.0"; sha256="1hsz9pbn428vbiwq5chs9j9hpsrsk1aqzjhgqwc5dybqi4x4qb8v"; depends=[coro ggplot2 interp loo progress progressr RColorBrewer Rcpp RcppArmadillo splines2 torch yaImpute]; }; SPREDA = derive2 { name="SPREDA"; version="1.1"; sha256="0fn4p5apjq8zgd3zms2b88ga5wbsv86y59ac5x06w75rf071xglv"; depends=[nlme survival]; }; SPRT = derive2 { name="SPRT"; version="1.0"; sha256="1r4pfqh8k5avi8qgpk5x1cy8lmkn341yvjvd2r7wqwb3mr242r0v"; depends=[]; }; SPSL = derive2 { name="SPSL"; version="0.1-9"; sha256="0kf6mmbvavid3dw2l4fkclk669wi13wkyykhwn5272d6qnhlhhca"; depends=[]; }; @@ -4889,8 +4749,6 @@ in with self; { SPlit = derive2 { name="SPlit"; version="1.2"; sha256="0n9458sj5sw4k9qd11gvmqmjf9hy1hh0bwx1jzm6r901l1wbp7xi"; depends=[Rcpp RcppArmadillo]; }; SPmlficmcm = derive2 { name="SPmlficmcm"; version="1.4"; sha256="1acs3560a7h6xx286m40abr9b7i5qihn6wni8flj0biahmsszzx6"; depends=[nleqslv]; }; SPreg = derive2 { name="SPreg"; version="1.0"; sha256="1702i86qcbnqyi7r5wc2ciyk3l46329kmnrz91jzqq85z8cwgak1"; depends=[sn ucminf]; }; - SQB = derive2 { name="SQB"; version="0.4"; sha256="12ii8xlwd2r77bj76j7l43898ras25z3plhhv106jaklhpcnk23m"; depends=[caret nnet pls rpart]; }; - SQDA = derive2 { name="SQDA"; version="1.0"; sha256="0nfimk625wb64010r5r7hzr64jfwgc6rbn13wvrpn0jgayji87h6"; depends=[limma mvtnorm PDSCE]; }; SQN = derive2 { name="SQN"; version="1.0.5"; sha256="0kb8kf6g482zqdp4avwvhs3pqghfny757dbzfl1abaigmvwvx4qj"; depends=[mclust nor1mix]; }; SQRL = derive2 { name="SQRL"; version="1.0.0"; sha256="1jlyrq42sg8r7fzs5sk0j8rir1mz3ypjy76mk00y8lm789knnzd7"; depends=[RODBC]; }; SQUAREM = derive2 { name="SQUAREM"; version="2021.1"; sha256="0n1s32l9p4vdm3h5q6g43s0qbpzry08difsh0yay80wrla6f3rb6"; depends=[]; }; @@ -4900,7 +4758,7 @@ in with self; { SSBtools = derive2 { name="SSBtools"; version="1.3.0"; sha256="1xis0yb8jp8g333ddrkfjprj4l8hlxkj1fzmglwx4sknklbcq66h"; depends=[MASS Matrix stringr]; }; SSDL = derive2 { name="SSDL"; version="1.1"; sha256="0m05m00qsjyc69kix124z6nrplqv1yaaag7qxpiizbn664h9hmjb"; depends=[bigstatsr chickn doParallel doRNG foreach glmnet pracma Rcpp RcppArmadillo RcppParallel Rdpack reshape2 rmio]; }; SSDM = derive2 { name="SSDM"; version="0.2.8"; sha256="19l78dkjk76ababkd7xsfn0fy99khfa4i502q4vllpvch4cjz51c"; depends=[dismo e1071 earth gbm ggplot2 mgcv nnet poibin randomForest raster reshape2 rpart scales shiny shinydashboard shinyFiles sp spThin]; }; - SSDforR = derive2 { name="SSDforR"; version="1.5.23"; sha256="1085fpal55nlix3qhym8kgmnhf8hhy2dpw71r90f4hqsrqdfkwjy"; depends=[MAd MASS metafor psych SingleCaseES TTR]; }; + SSDforR = derive2 { name="SSDforR"; version="1.5.24"; sha256="119blq4dpwfd2s6yl4yldyzavwrygbsvmhb9jhcwdcdank9gb7yd"; depends=[MAd MASS metafor psych SingleCaseES TTR]; }; SSHAARP = derive2 { name="SSHAARP"; version="1.1.0"; sha256="0x8dinhhfk4q1cck7ms78f4k23430c4wyvlh2qclq0c83acjj4y9"; depends=[BIGDAWG data_table DescTools dplyr filesstrings gmt gtools stringr]; }; SSLASSO = derive2 { name="SSLASSO"; version="1.2-2"; sha256="0vnn9ksdf0qgjflgx1sfj6q6j9jfnarbx2222rh9kb10jy8b16jv"; depends=[]; }; SSLR = derive2 { name="SSLR"; version="0.9.3.3"; sha256="0fv1jqri3gpzcfs429pgx4hjqmjrglb4g7nfqdihd2hjmq9k4sql"; depends=[conclust dplyr foreach generics magrittr parsnip plyr proxy purrr RANN Rcpp RcppArmadillo rlang RSSL]; }; @@ -4917,7 +4775,6 @@ in with self; { SSsimple = derive2 { name="SSsimple"; version="0.6.6"; sha256="1nhwr9kvlx899wsgzp47ykq3awp7p54zcvsdmjjh9ch4qcm9q2sm"; depends=[mvtnorm]; }; STAND = derive2 { name="STAND"; version="2.0"; sha256="07wrpmvk0jjlghvrb37xyai48vgzj0fby8y09qdxsxdlgwqg1f3s"; depends=[survival]; }; STAR = derive2 { name="STAR"; version="0.3-7"; sha256="1g78j4iyh78li1jaa3zz5qv4p41cg0imhmvbfakd34l32ppih4ll"; depends=[codetools gss mgcv R2HTML survival]; }; - STARTS = derive2 { name="STARTS"; version="1.2-35"; sha256="0xf5dck1zp1m1bxj8j02yyvg0y79i1y4bi3a6q1k41zixk3hcn2s"; depends=[CDM LAM Rcpp RcppArmadillo sirt]; }; STARTdesign = derive2 { name="STARTdesign"; version="1.0"; sha256="1q61l3v8ishzax3ppy0pz4ky4l46472l6j36hjlsa8cl01ik1zjf"; depends=[Rcpp]; }; STAT = derive2 { name="STAT"; version="0.1.0"; sha256="0x0qpnlcb52k3x8jwiljsamx81hdcjagfpapv63z054bvig0jvgv"; depends=[corrgram dplyr Hmisc psych psycho rmarkdown rpivotTable shiny]; }; STAT2 = derive2 { name="STAT2"; version="0.1.0"; sha256="09i6vzp5zmi84kdwafb5cbqvja32mdpj8bnp8gnc2wyqwy3a8cqv"; depends=[corrgram dplyr Hmisc psych psycho rmarkdown rpivotTable shiny]; }; @@ -4934,7 +4791,6 @@ in with self; { STRMPS = derive2 { name="STRMPS"; version="0.5.8"; sha256="0vlmhrna0laqzjpbg4sgnscrli3cly2lc5d69n6iqfl213zsfz78"; depends=[Biostrings dplyr IRanges purrr ShortRead stringr tibble tidyr]; }; STV = derive2 { name="STV"; version="1.0.2"; sha256="02cd78z2k08gg5kskw1m53dc2xyl9f8qhcnhvy9n90ckakw6h19h"; depends=[]; }; STraTUS = derive2 { name="STraTUS"; version="1.1.2"; sha256="0n3i7gbycp1f10058h9xlh3yk21w2izdb3xgs793mmh1i1sjy394"; depends=[ape ggplot2 ggtree gmp igraph phangorn RcppAlgos]; }; - SUE = derive2 { name="SUE"; version="1.0"; sha256="0akv724s84v2zixvwywj1ydfnfvcjnaabv6gm0601nsrh6ij1mi6"; depends=[]; }; SUMMER = derive2 { name="SUMMER"; version="1.2.1"; sha256="0wg9nz46dy5mll7dam8g24iaxn390lnggl7x2b88rrzy2kgcd11l"; depends=[data_table ggplot2 ggridges Matrix RColorBrewer reshape2 scales shadowtext sp spdep survey survival viridis]; }; SUNGEO = derive2 { name="SUNGEO"; version="0.2.288"; sha256="0c8y0ngx1020rw2v00rxmq8syd72f41ckik5sg7gigg7d80gi31w"; depends=[automap cartogram data_table dplyr fasterize httr jsonlite measurements packcircles purrr RANN raster Rcpp RCurl rlang rmapshaper sf sp spdep]; }; SVMMaj = derive2 { name="SVMMaj"; version="0.2.9"; sha256="1405gigyjfp8by8nfx4g3rhw9x6r6g7dkpgw52jllv6n4036xa3h"; depends=[dplyr ggplot2 gridExtra kernlab reshape2 scales]; }; @@ -4942,13 +4798,12 @@ in with self; { SVN = derive2 { name="SVN"; version="1.0.1"; sha256="0n93lqb1f2s2qvzc8lrcqmr0fhd57xqbi0ymrqqmll31ns679m92"; depends=[data_table igraph memoise]; }; SWIM = derive2 { name="SWIM"; version="1.0.0"; sha256="1pfrwxn4rha7a68b82lq18x6acyhjy9d8nn2hdwd9hhf576vkvhg"; depends=[ggplot2 Hmisc nleqslv plyr Rdpack reshape2]; }; SWMPr = derive2 { name="SWMPr"; version="2.4.1"; sha256="1dqhsqigfbfj167mp2h0wfybaymj9zlywh5d3syrrmpr694f9kz5"; depends=[data_table dplyr ggplot2 gridExtra httr lattice maptools oce openair RColorBrewer reshape2 tictoc tidyr XML zoo]; }; - SWMPrExtension = derive2 { name="SWMPrExtension"; version="2.2.0"; sha256="0i4dvsd4g1nah9g3q6wxkrp5xynwmhg2a94msiwxgq0ffg11di1q"; depends=[broom dplyr EnvStats flextable ggimage ggplot2 ggthemes lubridate magrittr officer purrr RColorBrewer rlang scales sf SWMPr tidyr tidyselect]; }; + SWMPrExtension = derive2 { name="SWMPrExtension"; version="2.2.2.0"; sha256="16akm1w1ps5fh09x3ymb0yfrpl5aw0lg1ncaz6vksipi2mp1bzch"; depends=[broom dplyr EnvStats flextable ggimage ggplot2 ggthemes lubridate magrittr officer purrr RColorBrewer rlang scales sf SWMPr tidyr tidyselect]; }; SWTools = derive2 { name="SWTools"; version="0.2.3.1"; sha256="19641hnzqzrk35brfsls0ib5c9920h30mizzpfias3jvmijjdj7n"; depends=[dplyr forcats ggmap ggplot2 httr hydroTSM jsonlite lubridate magrittr readr reshape2 rlang rmarkdown segmented sf sp stringr tibble tidyr zoo]; }; SYNCSA = derive2 { name="SYNCSA"; version="1.3.4"; sha256="0n9za302x638s666xs86zy94qch9wn0rln8xy6x9jymhhq9zn0kj"; depends=[FD permute RcppArmadillo vegan]; }; SailoR = derive2 { name="SailoR"; version="1.2"; sha256="04qrnps40845ypapf37jg1c1g05nii6iwk4fv1x5xyca963hl5ii"; depends=[]; }; Sample_Size = derive2 { name="Sample.Size"; version="1.0"; sha256="1vfnb2gg3rax4sxd81xqznfvh300nv45nn7zjsyrdjyg1n3ym7nw"; depends=[]; }; SampleSize4ClinicalTrials = derive2 { name="SampleSize4ClinicalTrials"; version="0.2.3"; sha256="0s8svsgwh79rcwnskz0my2xqasyp370hn7aixqm9m6zqlvf42zc2"; depends=[]; }; - SampleSizeMeans = derive2 { name="SampleSizeMeans"; version="1.1"; sha256="1wbc46n8b8wbcxl21blbzs5728dr8r0l8d3jpzbha8pcav0xrh1m"; depends=[]; }; SamplerCompare = derive2 { name="SamplerCompare"; version="1.3.2"; sha256="09j06ycr749dbr6xbn5pxw7rp1p3cri40z38hf1kp5kvjxkkpy2w"; depends=[mvtnorm]; }; SamplingBigData = derive2 { name="SamplingBigData"; version="1.0.0"; sha256="0khrh7vfqqzpfp16x0ic5ml854wr2fj28cx95s6c0pz91hzlxkns"; depends=[]; }; SamplingStrata = derive2 { name="SamplingStrata"; version="1.5-2"; sha256="1wqqcqka2an5ily91c2z8qw061xfbxgnxr783h584lbyx6ckzj4a"; depends=[doParallel glue memoise pbapply SamplingBigData]; }; @@ -4963,7 +4818,8 @@ in with self; { ScottKnottESD = derive2 { name="ScottKnottESD"; version="2.0.3"; sha256="0gjpjd8ljnp3v4fc72vhwjgscfw9vfivx710yg683pp30z0sv9nf"; depends=[car effsize forecast reshape2]; }; ScreenClean = derive2 { name="ScreenClean"; version="1.0.1"; sha256="0haanr05g4vwp5apncyzv8i3r61g4xf9ihm8ilcabcgpri56gpjk"; depends=[MASS Matrix quadprog]; }; ScriptMapR = derive2 { name="ScriptMapR"; version="0.0.3"; sha256="18pd23yqn3ai1yfl149081n42hbh0d57hm71s2lhm1z7a5ccjkmf"; depends=[dplyr formatR RCy3 stringr]; }; - SearchTrees = derive2 { name="SearchTrees"; version="0.5.2"; sha256="11p81x1klkmxarypxpbisf78dlrmhzzg9y9hxpwz75pks1y56gqg"; depends=[]; }; + SearchTrees = derive2 { name="SearchTrees"; version="0.5.3"; sha256="0ad133svpgzshha9jisyz93grvsmynmahzrcw8k5qi58d96p2arj"; depends=[]; }; + SecDim = derive2 { name="SecDim"; version="1.3"; sha256="05436s1qf7jms8xhgfvbyjzl9kcsk3k8ad2h9m75faxkzz0ivbcd"; depends=[RcppArmadillo]; }; SecKW = derive2 { name="SecKW"; version="0.2"; sha256="13x9l6ncx8qszkcr7dpfzrk4zqj4w8z5lwd394437vl4xf1xv0k6"; depends=[fdrtool pracma]; }; SeedCalc = derive2 { name="SeedCalc"; version="1.0.0"; sha256="1p8ncf3l2zhpbbblpjagg8cg9gf7f2izdcgc48n1aq4f7bmjbqgk"; depends=[]; }; SeerMapper = derive2 { name="SeerMapper"; version="1.2.5"; sha256="1sjg0a5mvyvgzwpmbr3avm76cb9a45qdwvic665v4hhhsmf2x8xk"; depends=[maptools RColorBrewer rgdal SeerMapper2010East SeerMapper2010Regs SeerMapper2010West SeerMapperEast SeerMapperRegs SeerMapperWest sp stringr]; }; @@ -5002,25 +4858,24 @@ in with self; { SeqMADE = derive2 { name="SeqMADE"; version="1.0"; sha256="0nf1xjhk0kpmmzgcxycg3ccxvwq6gydjq7xq6n9m7k7v35v9v3qf"; depends=[MASS]; }; SeqNet = derive2 { name="SeqNet"; version="1.1.3"; sha256="1ix3c249q758si6670hqa56g1snqqwqdrwshfwajvynl7k2zqzmv"; depends=[fitdistrplus ggplot2 igraph mvtnorm purrr Rcpp Rdpack rlang tibble]; }; SequenceSpikeSlab = derive2 { name="SequenceSpikeSlab"; version="1.0.0"; sha256="1aa89qnx43ia6lkaaz26jcrx8i9yxjsx5dpz8rpa0hv1h12g5ani"; depends=[Rcpp RcppProgress selectiveInference]; }; - Sequential = derive2 { name="Sequential"; version="4.2"; sha256="0ilpbzxgdqp8xzhyk51kvzigy0s8vpcwsjq9j7n83ca37anc83hf"; depends=[boot]; }; + Sequential = derive2 { name="Sequential"; version="4.3"; sha256="00901m3c5jnf58p394ndbkjiagqfzcnn25k4279df7wyahfc46gl"; depends=[boot]; }; SequentialDesign = derive2 { name="SequentialDesign"; version="1.0"; sha256="1gi37pixwbpy7358id1c75rckr352hs8vjs8sk8qgsr97pkm5xdq"; depends=[Sequential]; }; SetMethods = derive2 { name="SetMethods"; version="3.0"; sha256="14hh1rb8bma0cx3v9dmn58mkv6sky7xcnhwxwij5x8hp93a1i9is"; depends=[admisc betareg fmsb ggplot2 ggrepel QCA scatterplot3d stargazer]; }; SetRank = derive2 { name="SetRank"; version="1.1.0"; sha256="0p7vwsw05s5hfw1mfh3fbm9nfzsymnxzrdjin7k21dx7asb618wy"; depends=[data_table igraph XML]; }; SetTest = derive2 { name="SetTest"; version="0.2.0"; sha256="08wc6cbnannmwkncqhpcw6l0y7c1v7z3awk5j7fd853nszfmpbk0"; depends=[]; }; - Seurat = derive2 { name="Seurat"; version="4.1.0"; sha256="0p9i3fnkqa3vranr7c7ckzp1kq42d7p0gcfi9ml4kr334yd84195"; depends=[cluster cowplot fitdistrplus future future_apply ggplot2 ggrepel ggridges httr ica igraph irlba jsonlite KernSmooth leiden lmtest MASS Matrix matrixStats miniUI patchwork pbapply plotly png RANN RColorBrewer Rcpp RcppAnnoy RcppEigen RcppProgress reticulate rlang ROCR Rtsne scales scattermore sctransform SeuratObject shiny spatstat_core spatstat_geom tibble uwot]; }; - SeuratObject = derive2 { name="SeuratObject"; version="4.0.4"; sha256="1308hjbs8br3gp9vwm65awgp6vimwgi2jyl1ryn96l84savn2ljq"; depends=[Matrix Rcpp RcppEigen rlang]; }; + Seurat = derive2 { name="Seurat"; version="4.1.1"; sha256="1klamxk6dj0jgpfwll5frcnj9h8lh8c5fxdn9ky7h8xk35lsj6i0"; depends=[cluster cowplot fitdistrplus future future_apply ggplot2 ggrepel ggridges httr ica igraph irlba jsonlite KernSmooth leiden lmtest MASS Matrix matrixStats miniUI patchwork pbapply plotly png RANN RColorBrewer Rcpp RcppAnnoy RcppEigen RcppProgress reticulate rlang ROCR Rtsne scales scattermore sctransform SeuratObject shiny spatstat_core spatstat_geom tibble uwot]; }; + SeuratObject = derive2 { name="SeuratObject"; version="4.1.0"; sha256="018anas8a9m3kh9jn5370v64d93k64z3iic13a75hp6r7g5hd94w"; depends=[future future_apply Matrix progressr Rcpp RcppEigen rgeos rlang sp]; }; ShapeChange = derive2 { name="ShapeChange"; version="1.4"; sha256="1ch7avx8mxjk8vrp17inaihmbsv968wflyk1n4fbjvacbl24vn2b"; depends=[coneproj quadprog]; }; ShapePattern = derive2 { name="ShapePattern"; version="2.2.0"; sha256="0x4a9qg5g44kdras8j7f0yyw44qfpizpmj657xgmbrwcai4ic1dh"; depends=[igraph landscapemetrics raster rgdal rgeos sp]; }; ShapeRotator = derive2 { name="ShapeRotator"; version="0.1.0"; sha256="1pg2m1wh7fbchm8gp3mngfnf5g2rbhvzim1bpzqyvxqpx6ynicsa"; depends=[plot3D]; }; ShapeSelectForest = derive2 { name="ShapeSelectForest"; version="1.4"; sha256="15ds3024qcvnq3pnbhpyd6hbif26mdzw1srqv44hwsllgzpi7602"; depends=[coneproj raster]; }; ShapleyValue = derive2 { name="ShapleyValue"; version="0.2.0"; sha256="05ziyvvd81l0lx572in9snndnjdq8y4wkd8bxqs0y979l49yr6fd"; depends=[kableExtra MASS tidyverse]; }; SharpeR = derive2 { name="SharpeR"; version="1.3.0"; sha256="1xq2m53n2gc706lyd16gccllx2wgwdrqkfpf79jwwdmipqfqnxjx"; depends=[matrixcalc]; }; - SheetReader = derive2 { name="SheetReader"; version="1.0.1"; sha256="1n3shs0yvy5mxwqkiavldzq739bq96qh8skbcc1pr5iywpq9vxa6"; depends=[Rcpp]; }; + SheetReader = derive2 { name="SheetReader"; version="1.0.2"; sha256="0dcxv1gl78s90q3jh7q45g216c11h9xiwcwqbmgsxl622ydss0dc"; depends=[Rcpp]; }; ShellChron = derive2 { name="ShellChron"; version="0.4.0"; sha256="1xb06zszwirn5l63qa9g99q9by58sdqpg8s6kiq70z5qqnlgiq5c"; depends=[dplyr ggplot2 ggpubr magrittr rtop scales tidyr zoo]; }; ShiftConvolvePoibin = derive2 { name="ShiftConvolvePoibin"; version="1.0.0"; sha256="0pj3vynm8afns2kcwvmramxgbd0s2ksyyc5iha6p4dw2nz4hahc7"; depends=[]; }; - ShiftShareSE = derive2 { name="ShiftShareSE"; version="1.0.1"; sha256="09sm3frapxv1zhxy84wqyaxdk5jx62ijszfa34zlknlgivividfy"; depends=[Formula]; }; - ShinyImage = derive2 { name="ShinyImage"; version="0.1.0"; sha256="0nhsaq6i9lr8gqpdkahw3qr0c0cb0qwc0nqpk1ism21l6zg6ahc9"; depends=[EBImage R6 shiny shinyjs]; }; - ShinyItemAnalysis = derive2 { name="ShinyItemAnalysis"; version="1.4.0"; sha256="1haw8nqqnys6vg9fg4bj9fgfrwfa8m218y3nfdgcj6h4vgh8fbx7"; depends=[difR dplyr ggplot2 lme4 magrittr mirt nnet psych rlang rstudioapi tibble tidyr]; }; + ShiftShareSE = derive2 { name="ShiftShareSE"; version="1.1.0"; sha256="1zjqr0a6gs6k6mh8a5bzq48fz143g79p2k1ngcbrd9py8pdj0ss1"; depends=[Formula]; }; + ShinyItemAnalysis = derive2 { name="ShinyItemAnalysis"; version="1.4.1"; sha256="14xmm3zcgr89sanqv4x83g4pmc4m126wcbfl3cgpnygpx9q5q509"; depends=[difR dplyr ggplot2 lme4 magrittr mirt nnet psych purrr rlang rstudioapi tibble tidyr]; }; ShinyQuickStarter = derive2 { name="ShinyQuickStarter"; version="2.0.1"; sha256="19k46hwcab33l6dc43dp4hvvr366qh3z2jjw3b79x7f824wampnn"; depends=[colourpicker data_table dplyr fs ggplot2 miniUI plotly reshape2 shiny shinyalert shinydashboard shinyFiles shinyjs shinyWidgets stringi stringr styler]; }; ShinyTester = derive2 { name="ShinyTester"; version="0.1.0"; sha256="0wm4rl2p8ggw6v2chk9b6ygh5y8p8cwzbyra0nr0qr2ka97didp8"; depends=[dplyr purrr readr stringr tidyr visNetwork]; }; ShortForm = derive2 { name="ShortForm"; version="0.4.6"; sha256="0r8flmfhm47kyzy97j3mr87srfsxwlqqsx7v0ay9qm7q2jfg6xsw"; depends=[ggplot2 lavaan stringr tidyr]; }; @@ -5044,10 +4899,10 @@ in with self; { SimDesign = derive2 { name="SimDesign"; version="2.8"; sha256="0pp9bys2g30rmksgiz1icv6g4cd3x214ab9yr3grl5wy77m1ygzf"; depends=[beepr dplyr foreach pbapply RPushbullet sessioninfo]; }; SimDissolution = derive2 { name="SimDissolution"; version="0.1.0"; sha256="1rdsxykh740h22ln635m0ysm00pdw94vp7qhgify4mcvc46c3632"; depends=[alabama dplyr mvtnorm]; }; SimEUCartelLaw = derive2 { name="SimEUCartelLaw"; version="1.0.2"; sha256="06ypk5bsbvv5lf55jk7dmp8j820c0ywgvcnlh790zfkjcxyqaa0k"; depends=[plot3D plot3Drgl rgl]; }; - SimEngine = derive2 { name="SimEngine"; version="1.0.0"; sha256="15rdwpbcypymk9s34iwqzqzqcailhsldzq6c2d9b6jgsp81yy7qk"; depends=[data_table dplyr magrittr pbapply rlang]; }; + SimEngine = derive2 { name="SimEngine"; version="1.1.0"; sha256="0a919wbqgbvqm5drmzqp7ajywqfyb5ghizm8cbxwbcjjygvjaxla"; depends=[data_table dplyr magrittr pbapply rlang]; }; SimEvolEnzCons = derive2 { name="SimEvolEnzCons"; version="2.0.0"; sha256="0h3j8lp1s3zqb9qgy16gd0rdlbr2g1jqrc4a19zhmix2kygs5012"; depends=[ade4 RColorBrewer rgl scatterplot3d]; }; SimHaz = derive2 { name="SimHaz"; version="0.1"; sha256="04q4xyc1ki1zr3grm3khfg0kbykjy3j9qpg332l7pxp4j3wa3aw3"; depends=[survival]; }; - SimInf = derive2 { name="SimInf"; version="8.4.0"; sha256="0fpi5fnr4pgdq30s4p64kv1nl20znxnqk61b2cr7z2pj6yhqa265"; depends=[digest MASS Matrix]; }; + SimInf = derive2 { name="SimInf"; version="9.0.0"; sha256="05vflsb7yvmr10cvgi6b0210awvbf66krdnyk2j68dyxaz3l8cjd"; depends=[digest MASS Matrix]; }; SimJoint = derive2 { name="SimJoint"; version="0.3.9"; sha256="1bv7r9mgkcr24azblpfi3fiyay7kflxhq4am46qy32pa1vsfyadf"; depends=[Rcpp RcppArmadillo RcppParallel]; }; SimMultiCorrData = derive2 { name="SimMultiCorrData"; version="0.2.2"; sha256="0brszbqxf40y65xp96c5hp7hhvz3gv0xlg93r5ik8qdh0bn0y1sw"; depends=[BB GenOrd ggplot2 Matrix nleqslv psych triangle VGAM]; }; SimPhe = derive2 { name="SimPhe"; version="0.2.0"; sha256="01kzypahw41jk8s2c92h0k9w32yaicis07wb6k8qlqcmv0zj8xry"; depends=[]; }; @@ -5096,21 +4951,19 @@ in with self; { SnowballC = derive2 { name="SnowballC"; version="0.7.0"; sha256="1wwm71mp4b2mjb5985x782p6xj519dfrpd40qli7lmig6afyw3xi"; depends=[]; }; SoDA = derive2 { name="SoDA"; version="1.0-6.1"; sha256="0d3jb1dsg1q06c08ldmhj0q2sb1pc0g08rfal29ddng3b4qm1lhh"; depends=[]; }; SobolSequence = derive2 { name="SobolSequence"; version="1.0"; sha256="1vmp5jix3zvasvdirv8m88jc0cd8f34b4m1jvhs8g3v9lk8pxrrr"; depends=[Rcpp]; }; - SocialNetworks = derive2 { name="SocialNetworks"; version="1.1"; sha256="0d868xka6d35i17r28cvm0ya971xk6y1kycsfff0279w27cjd9x0"; depends=[Rcpp]; }; SocialPosition = derive2 { name="SocialPosition"; version="1.0.1"; sha256="1rrrjlq6czzhzipvkisbq024ca22v2vzx7wa4ddr9j7hnyyzzpic"; depends=[]; }; Sofi = derive2 { name="Sofi"; version="0.16.4.8"; sha256="0h9ir0xrwmsabfhwsr9hbpwabh1fsb3p51y8qcgm92iyvc6dl3mf"; depends=[foreign sampling shiny]; }; SoftClustering = derive2 { name="SoftClustering"; version="1.1902.2"; sha256="1r709r96ra9knkprjw6c227r7w6wygfpwc9pwwsjyw166305pxfs"; depends=[]; }; SoilHyP = derive2 { name="SoilHyP"; version="0.1.5"; sha256="0mpsy1fzy33vhb1la2y87c95bhc0ci4jfwzbsd47jz1s3pw6vzrl"; depends=[data_table lubridate]; }; SoilR = derive2 { name="SoilR"; version="1.2.105"; sha256="0liygb46900i6x4y6vhav7w7g4jw5chi4372jwdhn1kxp2g8zgfa"; depends=[assertthat deSolve expm igraph purrr sets]; }; SoilTaxonomy = derive2 { name="SoilTaxonomy"; version="0.1.4"; sha256="061m4di9h03phhx78xx3w8hvcssvkw96vz3szyghkmf7ill15w1n"; depends=[stringr]; }; + SoilTesting = derive2 { name="SoilTesting"; version="0.1.0"; sha256="0l808ic9irz7m8i3rcr65mqq5x4a3mk481c7f1ihca2rca43pm2j"; depends=[]; }; Sojourn = derive2 { name="Sojourn"; version="1.1.0"; sha256="0dy3xb6nazify29xir2krj9509bqa68b1jwq3lvvhfakxjqm0j05"; depends=[dplyr lubridate magrittr nnet PAutilities rlang svDialogs zoo]; }; Sojourn_Data = derive2 { name="Sojourn.Data"; version="0.3.0"; sha256="1flxiga9szhifndrhmf4blgms477gnnf4gd6wkxqgv3vgisc4q4i"; depends=[]; }; - SolveRationalMatrixEquation = derive2 { name="SolveRationalMatrixEquation"; version="0.1.0"; sha256="1m0b4sb247k6mlagvs4nj42ga9p48g9736lmhar7v1c5qhi7pw3v"; depends=[]; }; SolveSAPHE = derive2 { name="SolveSAPHE"; version="2.1.0"; sha256="1r42h19l186jry2wxmrp9y1jdcwr7wx4an3nmryc4l33f48idbfr"; depends=[]; }; SongEvo = derive2 { name="SongEvo"; version="1.0.0"; sha256="0mc5wlf5axbflys6g8b7xg0di3wwkli7q0a9fby6598fq9hbaqpd"; depends=[boot geosphere lattice sp]; }; SorptionAnalysis = derive2 { name="SorptionAnalysis"; version="0.1.0"; sha256="0drns1ajcga5z56hcgjxld1riwjn7vli8k1ma1xqifpy1qwy7ci6"; depends=[]; }; SortedEffects = derive2 { name="SortedEffects"; version="1.7.0"; sha256="188qlgg3m8f07hbjim65yw3qy6200y0b54imkdqm8mq0f14nmi0f"; depends=[boot Hmisc pbapply quantreg SparseM]; }; - SoundShape = derive2 { name="SoundShape"; version="1.1.9"; sha256="0akkqxiyw79dbhp3a31nrwd5q7a0204vnyddp5l423x5xj8q2x0g"; depends=[abind geomorph plot3D reshape2 seewave tuneR]; }; SoundexBR = derive2 { name="SoundexBR"; version="1.2"; sha256="0chc332v3wcz30v70yvdxhvcfdmvf4fj193cn00gl899xfxal89p"; depends=[]; }; SoupX = derive2 { name="SoupX"; version="1.5.2"; sha256="1zhd2vx4g3kpxpfq996h909k4lybzb79nw1kvhx7073aniq042c3"; depends=[ggplot2 Matrix Seurat]; }; SourceSet = derive2 { name="SourceSet"; version="0.1.3"; sha256="159kg4pna24yihkghxc2k5f56dqk8aypxcmj1whgnajmgab29ry1"; depends=[graph gRbase gtools igraph plyr progress reshape2 scales]; }; @@ -5137,9 +4990,8 @@ in with self; { SpatEntropy = derive2 { name="SpatEntropy"; version="2.1-1"; sha256="0navil5wjzw67diz87ijnaikx4ws7fnbqqbmpdxhla6dfdd8yhd5"; depends=[spatstat spatstat_core spatstat_geom spatstat_linnet spatstat_random]; }; SpatialAcc = derive2 { name="SpatialAcc"; version="0.1-4"; sha256="09rkzfzg6nh4n7dizkqrz651kp617l2557c9qpxacspl3ngbm82i"; depends=[sp]; }; SpatialBSS = derive2 { name="SpatialBSS"; version="0.12-0"; sha256="173zr8r0wp7zcg4ziqagfzzlwf5gjcywj5nqvsnnpwbgjagpfla1"; depends=[JADE Rcpp RcppArmadillo sp]; }; - SpatialBall = derive2 { name="SpatialBall"; version="0.1.0"; sha256="09iy1smfqnb0rd2s9a1wqgscb1plwcwwph6a8215l4zrs6svszv2"; depends=[dplyr ggplot2 hexbin lubridate RColorBrewer]; }; SpatialEpi = derive2 { name="SpatialEpi"; version="1.2.7"; sha256="0hfspksv9dgi98kcjwa291x8dglskfl4d1cjkd2hqxlf73havpzx"; depends=[maptools MASS Rcpp RcppArmadillo sp spdep]; }; - SpatialExtremes = derive2 { name="SpatialExtremes"; version="2.0-9"; sha256="1mhn1c8n3bmgf0fjyac3wji4790zswzkqliqcv3n8kv9806crb0y"; depends=[fields maps]; }; + SpatialExtremes = derive2 { name="SpatialExtremes"; version="2.1-0"; sha256="0z1swxp1syz8hdskarjxx4sdd7wx835kcnb783bwqm235yh991j3"; depends=[fields maps]; }; SpatialGEV = derive2 { name="SpatialGEV"; version="1.0.0"; sha256="0g4v84a4c14a2vf7y055j9jgcki7q4182lmmmphrahiqwnjxhm1b"; depends=[evd mvtnorm TMB]; }; SpatialGraph = derive2 { name="SpatialGraph"; version="1.0-2"; sha256="0cwswa5g3a6ng8qkwi04jz9pma4i0c16m7jpq6z3djzjin0znyk2"; depends=[igraph rgeos shape sp splancs]; }; SpatialKDE = derive2 { name="SpatialKDE"; version="0.7.0"; sha256="0qmky12886bw2i7lnhcqq9zzyzmbh1670c8l2adqjiz9k0cykmp4"; depends=[dplyr glue magrittr raster Rcpp rlang sf vctrs]; }; @@ -5163,14 +5015,13 @@ in with self; { SphereOptimize = derive2 { name="SphereOptimize"; version="0.1.1"; sha256="1b01jpj0sagi3hwfvgd346wvrcypv5b3hh0xfdd8qqnwjgkq8ixi"; depends=[]; }; SphericalCubature = derive2 { name="SphericalCubature"; version="1.5"; sha256="03j9f9v3zrykrd4lc74i19s3xyc0z3l2kg3056qg591sxw64h7vh"; depends=[abind cubature mvmesh SimplicialCubature]; }; SphericalK = derive2 { name="SphericalK"; version="1.2"; sha256="18py4ylm10s75pihjvcy7w948379zy9l9azriw7g7pyp7px29wda"; depends=[]; }; - SpiceFP = derive2 { name="SpiceFP"; version="0.1.0"; sha256="1ffvs1j8kbdxj4hs88fm1qnl7y5s40yvn4p8a2swpj9fl7r650bi"; depends=[doParallel foreach genlasso gplots Matrix purrr stringr tidyr]; }; + SpiceFP = derive2 { name="SpiceFP"; version="0.1.1"; sha256="080640q212lf1jwcrab9dcj26gazmvvxhjg797s1s5pnmax57m6n"; depends=[doParallel foreach genlasso Matrix purrr stringr tidyr]; }; Spillover = derive2 { name="Spillover"; version="0.1.0.1"; sha256="0jwhih0jzd6grd9y967k7j5vwv9sd20xqi2270y1cgl64v21bjzm"; depends=[fastSOM vars zoo]; }; Splinets = derive2 { name="Splinets"; version="1.0.0"; sha256="1fws9svxvn03xgfqmqwr169wgl544zv87yrdi4nl5z32cq5c9yk5"; depends=[]; }; - SplitGLM = derive2 { name="SplitGLM"; version="1.0.2"; sha256="0708jz8j44lw6zs5f6w4v9pf7apd22j15g7lszc8kwlm8xsnnkf6"; depends=[Rcpp RcppArmadillo]; }; + SplitGLM = derive2 { name="SplitGLM"; version="1.0.3"; sha256="05r20apjz7li5q3jc471vblic4xdv22gh0g640c9myq7hlwgppj9"; depends=[Rcpp RcppArmadillo]; }; SplitKnockoff = derive2 { name="SplitKnockoff"; version="1.2"; sha256="1ywh86gkkcc2dddqfgs5w8w9wyjfqmvcr31jga41ddvj5rb8zkhx"; depends=[ggplot2 glmnet latex2exp MASS Matrix mvtnorm RSpectra]; }; SplitReg = derive2 { name="SplitReg"; version="1.0.2"; sha256="1s012qldrsq8rpfpzf7kyd7631b65zai269x53xcaqn75r5ssh3f"; depends=[Rcpp RcppArmadillo]; }; SplitSoftening = derive2 { name="SplitSoftening"; version="2.1-0"; sha256="1fgcqax81zpknw642fm9dx1f6dpdgbcf3va0m1bhj6kl98yq7dqd"; depends=[]; }; - SportsAnalytics = derive2 { name="SportsAnalytics"; version="0.2"; sha256="1vb080ak1mfvr6d0q9i3r8hd547ba80bavjdcri0gclqqcjf1ach"; depends=[]; }; SportsTour = derive2 { name="SportsTour"; version="0.1.0"; sha256="06d66yv0b7c3mg1bcnrlg576njxgri107ni0vnl27hzf46fyidwa"; depends=[]; }; SpotSampling = derive2 { name="SpotSampling"; version="0.1.0"; sha256="0s47dvigzkcl9ynrdiwrjzwap18dpkb29jngi8ddvf9m4xywj4al"; depends=[BalancedSampling MASS pracma sampling WaveSampling]; }; SqlRender = derive2 { name="SqlRender"; version="1.9.0"; sha256="1ivikd86kb6z5w6i7aqpn9a51g9z6p298amf36l1a9azqwggxm5l"; depends=[rJava rlang]; }; @@ -5186,9 +5037,7 @@ in with self; { StakeholderAnalysis = derive2 { name="StakeholderAnalysis"; version="1.2"; sha256="164mah8h8izxaqp8hc43l6mlnf95pydkcx2laqrlqr9b0bybadxb"; depends=[]; }; StanHeaders = derive2 { name="StanHeaders"; version="2.21.0-7"; sha256="0srkyawyiykn3p5lw1z3zf18s4ax4iasv1ci3l1px40f9w36wm17"; depends=[RcppEigen RcppParallel]; }; StanMoMo = derive2 { name="StanMoMo"; version="1.0.0"; sha256="08dbnmzh48767kisbhcwzjgbkpgszcq1smb01xfmb43iwfdb46mf"; depends=[BH bridgesampling dplyr ggfan ggplot2 httr latex2exp loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tibble tidyr tidyselect tidyverse]; }; - StandardizeText = derive2 { name="StandardizeText"; version="1.0"; sha256="0s267k2b109pcdiyd26gm4ag5afikrnnb55d3cs6g2fvzp744hfp"; depends=[]; }; Stat2Data = derive2 { name="Stat2Data"; version="2.0.0"; sha256="1fpp3b4k7x915a9wkpyj4dvvqp0wz7c3lpbh154vrxrdsr712z0k"; depends=[]; }; - StatDA = derive2 { name="StatDA"; version="1.7.4"; sha256="1ld7fx1lip54n24r2d9zvd4hri3w02vd174bdi8pi9j5n8xpxl02"; depends=[cluster e1071 geoR MASS MBA mgcv rgl robustbase sgeostat sp xtable]; }; StatDataML = derive2 { name="StatDataML"; version="1.0-26"; sha256="1lcckapbhqdbg6alnhm2yls66lnkxnxamdlzx6pbfqv1dhsy36gf"; depends=[XML]; }; StatMatch = derive2 { name="StatMatch"; version="1.4.1"; sha256="1iavyaj6q8rbvhki98q8zwikfrgjrp6w8prhnqhiv0yb8k27jm0c"; depends=[ggplot2 lpSolve proxy survey]; }; StatMeasures = derive2 { name="StatMeasures"; version="1.0"; sha256="1bnbz803xx8kqhy1cx545b35si6f10za0mp5z82qfvd4kv9a9izz"; depends=[data_table]; }; @@ -5199,12 +5048,12 @@ in with self; { SteinerNet = derive2 { name="SteinerNet"; version="3.1.0"; sha256="03wr746dkwp8vg91y986q0xvgz1y9b5q25g0kig2sx6m75li3yif"; depends=[igraph]; }; Stem = derive2 { name="Stem"; version="1.0"; sha256="1fr02mi5qyxbqavdh2hg8ggw4nfjh3vs7g0vh834h6y0v53l71r5"; depends=[MASS mvtnorm]; }; StempCens = derive2 { name="StempCens"; version="1.1.0"; sha256="0jphyikfggx0yj5f5k3fykf3fdv9msppymzpyin1m7xfmfi5cwia"; depends=[distances ggplot2 MCMCglmm mvtnorm Rcpp RcppArmadillo Rdpack tmvtnorm]; }; - StepBeta = derive2 { name="StepBeta"; version="0.1.1"; sha256="15kk0sfakqmhqsmp5hdwd1l8ppivbgaclfzdci8a9f1yj0bzwcmr"; depends=[betareg glue]; }; + StepBeta = derive2 { name="StepBeta"; version="1.0.0"; sha256="1xf9afiaqx8wfm4b48b1g9jkzcfx7vdbz4baf6ng7fbl4r1b0cgk"; depends=[betareg glue]; }; StepReg = derive2 { name="StepReg"; version="1.4.3"; sha256="0c9zxrm5nrxnibrg59gzlz4axnj1c9m6y5wawpak6k41c61q6x2y"; depends=[survival]; }; StepSignalMargiLike = derive2 { name="StepSignalMargiLike"; version="2.6.0"; sha256="0j85lvs2bljfhf482r31sq3xgk8l73hcw22wgxxp8z8nla38cwf9"; depends=[Rcpp]; }; SteppedPower = derive2 { name="SteppedPower"; version="0.3.1"; sha256="1iaaih7pwrs9icn0x7zpqicwnbpgb4azsy0dh238aq2ghawx0p2s"; depends=[Matrix plotly Rfast]; }; StepwiseTest = derive2 { name="StepwiseTest"; version="1.0"; sha256="1fdm4s9l6grgd45r98ybbsh40rnmnn16c0id6lv28cpmssi0iphi"; depends=[Rcpp RcppArmadillo]; }; - StereoMorph = derive2 { name="StereoMorph"; version="1.6.4"; sha256="1xmqggisdyww0gpkgbv3dml1jik0crm3ia9q1952gx4fa8iiqd82"; depends=[bezier jpeg MASS png Rcpp rjson shiny svgViewR tiff]; }; + StereoMorph = derive2 { name="StereoMorph"; version="1.6.5"; sha256="0y2rvffcaxakxxa3y8nszp0pjvigh4fjqzydsc6yg31apfwwm6f8"; depends=[bezier jpeg MASS png Rcpp rjson shiny svgViewR tiff]; }; Storm = derive2 { name="Storm"; version="1.2"; sha256="1fg8y9my9yp6px1gh43mr3m2s2z262mzq03pj52mqg3n186vk8z3"; depends=[permute rjson]; }; StrainRanking = derive2 { name="StrainRanking"; version="1.2"; sha256="1r8avm9xajqmsy4x7pgh1yaffq7wl5i5kg75kdilydwmii6n19i0"; depends=[]; }; StratSel = derive2 { name="StratSel"; version="1.3"; sha256="0hd6q8s8aiymcd33kv0gd0a4wzr86xxdzwn18jgpyk9q8pmg8gvl"; depends=[Formula MASS memisc mnormt pbivnorm]; }; @@ -5214,7 +5063,7 @@ in with self; { StratifiedMedicine = derive2 { name="StratifiedMedicine"; version="1.0.5"; sha256="0q1d5jar5x2v9bsrfzv73wirgbkvy16ibzq93qv9b6c4zj3q75r7"; depends=[coin dplyr ggparty ggplot2 glmnet mvtnorm partykit ranger survival]; }; StratifiedRF = derive2 { name="StratifiedRF"; version="0.2.2"; sha256="0a5djia6xacs17nnr5knr1acwzicrffz73q9nvnhdmihazq8v27d"; depends=[C50 dplyr]; }; StratifiedSampling = derive2 { name="StratifiedSampling"; version="0.3.0"; sha256="190drdcry26rq63i4lzm5s3x79jjjqsngmxgyxwbfgz8hbqj85jx"; depends=[MASS Matrix proxy Rcpp RcppArmadillo sampling transport]; }; - StratigrapheR = derive2 { name="StratigrapheR"; version="1.2.4"; sha256="00m0ag5va8r7aq6j2766cv4596qbgjgcfljkbq7vm0p4hx78x51x"; depends=[diagram dplyr reshape shiny stringr XML]; }; + StratigrapheR = derive2 { name="StratigrapheR"; version="1.2.5"; sha256="0wc4q3y8n9wd79dwjn5i4y4b5h8yk3g9x3ifg7dxsryk5i2wml0c"; depends=[diagram dplyr reshape shiny stringr XML]; }; StreamMetabolism = derive2 { name="StreamMetabolism"; version="1.1.2"; sha256="1sv30i7armk7jhxg5x9lh0r9qq3xixn1k2h0q89halkh1yraal8a"; depends=[chron maptools zoo]; }; StressStrength = derive2 { name="StressStrength"; version="1.0.2"; sha256="1fq26bzmwsk4nzz9bgasyxz9alw8x2ssahz67mham7vw483w79pd"; depends=[]; }; String2AdjMatrix = derive2 { name="String2AdjMatrix"; version="0.1.0"; sha256="058r30kjjna02nmd6ngqfcnn1yk5390i20xvl6qb5qk3bcp2wmxn"; depends=[stringr]; }; @@ -5258,7 +5107,7 @@ in with self; { SurvRegCensCov = derive2 { name="SurvRegCensCov"; version="1.5"; sha256="0p39xqrnx2x0fgdfdr9ffv2x9zcgi53kqya821gpbnn3ccjzxx58"; depends=[numDeriv survival]; }; SurvTrunc = derive2 { name="SurvTrunc"; version="0.1.0"; sha256="0b6s7llljp75agd57lmc1yq5acnfwy113khrfjcbm1l5ply6pz7f"; depends=[survival]; }; SurviMChd = derive2 { name="SurviMChd"; version="0.1.1"; sha256="1sj3i950nmam3r70as85kdx6nd88iidb5jpiz2a5a39i5lb7mgf7"; depends=[dplyr ICBayes icenReg R2jags Rdpack readr rjags rlang survival tidyverse]; }; - SvyNom = derive2 { name="SvyNom"; version="1.1"; sha256="1jym2x6nd9a3y7nk5hflqpy54gs67y4sqqspkvkalf5l2cc64did"; depends=[Hmisc rms survey survival]; }; + SvyNom = derive2 { name="SvyNom"; version="1.2"; sha256="0s9gn10v6a8n6898g0gmdrw51z7y98klji59sn06dfbsxlswlv11"; depends=[Hmisc rms survey survival]; }; SwarmSVM = derive2 { name="SwarmSVM"; version="0.1-6"; sha256="09xq7jx70qjyhblzh6kc40hdr0636rqqdnbka7m6rawhd8ivp8yz"; depends=[BBmisc checkmate e1071 kernlab LiblineaR Matrix SparseM]; }; SwimmeR = derive2 { name="SwimmeR"; version="0.13.0"; sha256="16vimqdbsj7nb1cv0in6qza00qicajpdcpmzf3lv47wm5kp2iv6n"; depends=[dplyr magrittr pdftools purrr readr rvest stringr xml2]; }; SwissAir = derive2 { name="SwissAir"; version="1.1.5"; sha256="0lh69924vhyilgn562jqn8m7z4dq3xmdj09501sbs7hbxfaiiyly"; depends=[]; }; @@ -5267,7 +5116,7 @@ in with self; { SymbolicDeterminants = derive2 { name="SymbolicDeterminants"; version="2.0.0"; sha256="0hf9b9g2vgpyqbxgi5rkkls2b8vw1zrwl8lymwvwb6y1vwfl9pym"; depends=[arrangements fs]; }; SyncMove = derive2 { name="SyncMove"; version="0.1-0"; sha256="1jlnsj5v8y5pijfkww7ng7nkwvj93naw29wcxxj130ww5qk7qk1z"; depends=[]; }; SyncRNG = derive2 { name="SyncRNG"; version="1.3.0"; sha256="0sywfmmy6mq6qsxkxjc67665snn1jds01j3h7ni1200igja139g2"; depends=[]; }; - SynchWave = derive2 { name="SynchWave"; version="1.1.1"; sha256="127hllvig8kcs9gr2q14crswzhacv6v2s4zrgj50qdyprj14is18"; depends=[fields]; }; + SynchWave = derive2 { name="SynchWave"; version="1.1.2"; sha256="1y53235523z0nf4pmskdiz3xq4p8hdzvf5jy4ml4isj6nqzy6b88"; depends=[fields]; }; Synth = derive2 { name="Synth"; version="1.1-5"; sha256="1cfvh91nz6skjk8jv04fhwv3ga9kcsfgq3mdy8lx75jkx16zr0pk"; depends=[kernlab optimx]; }; SynthCast = derive2 { name="SynthCast"; version="0.2.1"; sha256="0gln7x1vlfdnr0qaqgagr93r484hv3dp65n24b3wl3p02msz9bgn"; depends=[dplyr forcats Synth tidyr]; }; SynthETIC = derive2 { name="SynthETIC"; version="1.0.2"; sha256="1z7jyal707a93hv0fsgnkxpnywqw6ksifk0546alzm32g5lp4655"; depends=[ggplot2 magrittr rlang]; }; @@ -5278,7 +5127,7 @@ in with self; { T4transport = derive2 { name="T4transport"; version="0.1.0"; sha256="0cp2881j6qyzh1yl23f2layhldsgdy7ic7c8c4hydfv7c7qkkg3d"; depends=[lpSolve Rcpp RcppArmadillo Rdpack]; }; TAF = derive2 { name="TAF"; version="4.0.0"; sha256="0v796lrfb2n2m74vdgm9f1gm9c8xc780d09rgwfdcc4q3nr3gld8"; depends=[lattice]; }; TAG = derive2 { name="TAG"; version="0.5.1"; sha256="1hni3ay1pg4gy3gm3sn3bcr8m3z2vlc5ivg7bmkzpxqdkl0w01h2"; depends=[DiceKriging FastGP foreach Matrix mgcv mlegp randtoolbox Rcpp RcppArmadillo]; }; - TAM = derive2 { name="TAM"; version="3.7-16"; sha256="1969xm1f7s183h0xnd4g1bxhjp80rl7kad29zwcig0fmw6bs2mpd"; depends=[CDM Rcpp RcppArmadillo]; }; + TAM = derive2 { name="TAM"; version="4.0-16"; sha256="00ww277hsyci5rph4gb155h0y95dmjhqgn9amz6g8zbrjb2748dw"; depends=[CDM Rcpp RcppArmadillo]; }; TANDEM = derive2 { name="TANDEM"; version="1.0.3"; sha256="151rm95q2naw9y58df1lr2qiadnkgfb5j9v47v41bw4iipsmlp4p"; depends=[glmnet Matrix]; }; TAQMNGR = derive2 { name="TAQMNGR"; version="2018.5-1"; sha256="0bf0sgqa53l9y2bhwg2ngiwlcgrmj0nvxchlsmcc8zin388qf4pb"; depends=[Rcpp]; }; TAR = derive2 { name="TAR"; version="1.0"; sha256="0wjh2n9x3yn9by9a6mjvkl96qy7z549g6dsqp7b4d96xwmyqxlbv"; depends=[mvtnorm]; }; @@ -5286,7 +5135,6 @@ in with self; { TBEST = derive2 { name="TBEST"; version="5.0"; sha256="15piy507vv8x59xgga17splxszy0vm87qjbfgxycvba633jishsa"; depends=[fdrtool signal]; }; TBFmultinomial = derive2 { name="TBFmultinomial"; version="0.1.3"; sha256="0cd0dr8vkf0sfriaafp2x63dilxmirm0fljxm82zw77c9j5ly3kv"; depends=[nnet plotrix stringr VGAM]; }; TBRDist = derive2 { name="TBRDist"; version="1.0.2"; sha256="0xwr91fyx3x27szkafmcs5sffgs64svky7mddrrgcfnbdl5c4iia"; depends=[ape BH Rcpp Rdpack TreeDist TreeTools]; }; - TBSSurvival = derive2 { name="TBSSurvival"; version="1.3"; sha256="1r87qvnlvc18i12yi25lfpdb8b5p33fywi38hs2xp1y2vbvz5s9b"; depends=[BMS coda mcmc normalp R_utils Rsolnp survival]; }; TCA = derive2 { name="TCA"; version="1.2.1"; sha256="1gyps0m7r44vcbzpbrs3xy2kyb2xsvmfzk1c0aq04s4ndcksplwb"; depends=[config data_table futile_logger gmodels Matrix matrixcalc matrixStats nloptr pbapply pracma quadprog rsvd]; }; TCGAretriever = derive2 { name="TCGAretriever"; version="1.5"; sha256="1xg1rz2h5jbpdd5axli3ripqxb0bj64yrd4y5nzr8axajiaybkj9"; depends=[httr]; }; TCIApathfinder = derive2 { name="TCIApathfinder"; version="1.0.6"; sha256="15f3w6vhbqy4xzidxasjnqigxchd3jbr2kpm3gggjnkp7rzsfgaf"; depends=[httr jsonlite]; }; @@ -5304,15 +5152,14 @@ in with self; { TEAM = derive2 { name="TEAM"; version="0.1.0"; sha256="1yj7fw935rr7fh7h2p4ra8d3ynz5c6b30fqzm1djgav1k84wcin2"; depends=[ggplot2 ks plyr]; }; TELP = derive2 { name="TELP"; version="1.0"; sha256="0wzm3dz0489ha7dd6lkashvvjydck9jw2pavlx9plpksvzr4q9ph"; depends=[arules arulesViz ggplot2 gridExtra RColorBrewer tcltk2 tm wordcloud]; }; TEQR = derive2 { name="TEQR"; version="6.0-0"; sha256="112znsz36jqh3krnr4j05xl70picih8qpmqky2gllgyr8nky39fr"; depends=[]; }; - TERAplusB = derive2 { name="TERAplusB"; version="1.0"; sha256="0mshx615awcf2arm39mgw2gzgpyn7a3f767484g7z4nqqlikwpgc"; depends=[]; }; - TESS = derive2 { name="TESS"; version="2.1.1"; sha256="0cbrs4x026pbnclfz584gaj42d4gvma68cd6cgx2my54j42jcn73"; depends=[ape coda deSolve Rcpp]; }; + TESS = derive2 { name="TESS"; version="2.1.2"; sha256="0qhzxppgk4ihkg00d08abb7xjl82n87mm3319iv0g7n6rky2qxy8"; depends=[ape coda deSolve Rcpp]; }; TExPosition = derive2 { name="TExPosition"; version="2.6.10.1"; sha256="0psdm35g7h7d8cr3xlyq8akr0qrbl44d5pnsaf535cs5pmqdp87b"; depends=[ExPosition prettyGraphs]; }; TFMPvalue = derive2 { name="TFMPvalue"; version="0.0.8"; sha256="0h9qkl15k8v17v3g9bdnfwvh2s04ywjgg5y0xn2077dmywlja1bd"; depends=[Rcpp]; }; TFX = derive2 { name="TFX"; version="0.1.0"; sha256="0xrjdbvg0ng4i0s8ql1pfyma10x4n045spilkb05750677r5j44p"; depends=[XML]; }; TFisher = derive2 { name="TFisher"; version="0.2.0"; sha256="0vz74ww1lf1prfwz74hfsi3a8nzq8ss7aqjr85c1d87vss2796xx"; depends=[Matrix mvtnorm sn]; }; TGS = derive2 { name="TGS"; version="1.0.1"; sha256="01mwdlgfjlxy0q5lxcmzk6lsb806987va7yag0zpjjd2bzmdh70k"; depends=[bnstruct doParallel foreach ggm minet rjson]; }; TGST = derive2 { name="TGST"; version="1.0"; sha256="1xnb41ksggdi57gnkjaab98c4nfdkxqx53rv9pyh3j0cg0kbkk9v"; depends=[ggplot2 knitr]; }; - TH_data = derive2 { name="TH.data"; version="1.1-0"; sha256="0ghihfpk5d8gsdlzf6phw7dwwz3adx64pxk82vlmlqx53ljpxcr1"; depends=[MASS survival]; }; + TH_data = derive2 { name="TH.data"; version="1.1-1"; sha256="0ynxacnz002bjsp2ybql7rdqw4zd14af8r7w44nwbx22n4bapwzd"; depends=[MASS survival]; }; TIGERr = derive2 { name="TIGERr"; version="1.0.0"; sha256="04nnm0adf0sbgv7a2ikaq2a5kb9j1xmdfmssizm49q5j457rrl7d"; depends=[pbapply ppcor randomForest]; }; TIMP = derive2 { name="TIMP"; version="1.13.2"; sha256="1y1bc6wsd32792apsc6qncxbw5y8ww9xlhy9v49mhwbffgzn6llg"; depends=[colorspace deSolve fields gclus gplots minpack_lm nnls]; }; TITAN2 = derive2 { name="TITAN2"; version="2.4.1"; sha256="16zf42s1as2xrvyhd0lnv36mgnr5w19xv11pkl0k8imb5bdkhxa2"; depends=[cowplot dplyr ggplot2 ggridges glue purrr snow tibble]; }; @@ -5364,7 +5211,6 @@ in with self; { TSS_RESTREND = derive2 { name="TSS.RESTREND"; version="0.3.1"; sha256="1la1ff9ajcabdsz5f2761647304fpwp779gv0gjds4mg25rf6n2f"; depends=[bfast broom ggplot2 mblm RcppRoll strucchange]; }; TSSQLite = derive2 { name="TSSQLite"; version="2015.4-1"; sha256="10z8s967wmapkb56hh2brb5bafgqr8flwh0sr72yqqv0ca2d06sc"; depends=[DBI RSQLite tframe tframePlus TSdbi TSsql]; }; TSSS = derive2 { name="TSSS"; version="1.3.1"; sha256="06wnbj741yyi5b483zhbaccvqpbg8lh3z9vnrxy64x28hnn79cly"; depends=[]; }; - TSTr = derive2 { name="TSTr"; version="1.2"; sha256="0nljkqsrwzg7i82arpfrz2k9m1k1akin1akf01c5cadxq4rgarsf"; depends=[data_table stringdist stringr]; }; TSTutorial = derive2 { name="TSTutorial"; version="1.2.3"; sha256="0hpk6k3lc72p8pdz5aad04lcjsz9k443h5gs09dc3i10wqw3yhxs"; depends=[MASS]; }; TSVC = derive2 { name="TSVC"; version="1.2.2"; sha256="0c2dwsb17al6vfgk38xlbzww08xa1i2lji1bhzc3zlp7nb4mkxy8"; depends=[mgcv plotrix]; }; TSclust = derive2 { name="TSclust"; version="1.3.1"; sha256="1pj984sf7z0bakr55jqcrxr4mh4gihdv197m2k05phpp5hsplsjh"; depends=[cluster dtw forecast KernSmooth locpol longitudinalData pdc]; }; @@ -5373,7 +5219,6 @@ in with self; { TSdbi = derive2 { name="TSdbi"; version="2017.4-1"; sha256="0vwx2wyls4byyp67q9bp1psxdq5jnlimwk2162khk6daaxs14aiv"; depends=[DBI tframe]; }; TSdist = derive2 { name="TSdist"; version="3.7"; sha256="1xw707ry242i8nhldrsqxj391i8dhhmhdbidzdk95d6hma4vq9z3"; depends=[cluster dtw KernSmooth locpol longitudinalData pdc proxy TSclust xts zoo]; }; TSeriesMMA = derive2 { name="TSeriesMMA"; version="0.1.1"; sha256="0dkrz3m5lh872c0q9nw4h0p6g4j1j9fn92hz8xlifpsbsyzpz63b"; depends=[]; }; - TSfame = derive2 { name="TSfame"; version="2015.4-1"; sha256="197v123mkxr7qlksnb5iadms5zbc8xqbpgr2cspb8x1krz6phssz"; depends=[DBI fame tframe tframePlus tis TSdbi]; }; TSmisc = derive2 { name="TSmisc"; version="2016.8-1"; sha256="0xvn6qlvvdc65l356r8b5ppddjd35k9fc4b5w5wn3j5wzxfllbk1"; depends=[DBI gdata quantmod tframe tframePlus TSdbi tseries zoo]; }; TSodbc = derive2 { name="TSodbc"; version="2015.4-1"; sha256="0m6r97gs483jg6jlmfkbzxg3jvf6q140kvpidjccj224zb1sqlcq"; depends=[DBI RODBC tframe tframePlus TSdbi TSsql]; }; TSrepr = derive2 { name="TSrepr"; version="1.1.0"; sha256="1bplh808byfi86rz2bs1ikiggg0a1k0z282vidhygvl927hz2fa4"; depends=[dtt MASS mgcv quantreg Rcpp wavelets]; }; @@ -5397,12 +5242,11 @@ in with self; { TableMonster = derive2 { name="TableMonster"; version="1.7"; sha256="1xa4bkcpzhm50dwbpya346swjjfw46n2x26xm30p8gppilg5c0lb"; depends=[xtable]; }; TableToLongForm = derive2 { name="TableToLongForm"; version="1.3.2"; sha256="034vca0il7006zdkh5vdfjddyq9lg5mkl8hjria2rpks6wx0jhrd"; depends=[]; }; TailClassifier = derive2 { name="TailClassifier"; version="0.1.0"; sha256="1m9a2x837v6s7gsv8g5ll6s2h1lk0jjfig2qvkqzg97xp7v9b8in"; depends=[readr]; }; - TailRank = derive2 { name="TailRank"; version="3.2.1"; sha256="142m0cq9j8y5g9wh4plxya1jqi0dv6p6praxx3jb84kwqspi91xr"; depends=[Biobase oompaBase oompaData]; }; + TailRank = derive2 { name="TailRank"; version="3.2.2"; sha256="02cxfdrc2pncw7pivg00414rzy27jp57pbg2ibq5a4fj8zm9bv91"; depends=[Biobase oompaBase oompaData]; }; TanB = derive2 { name="TanB"; version="0.1"; sha256="05y9j1a5nzqfpsw48gix5c4ds1cm80liad9wnwmddhbx4fda6p32"; depends=[fdrtool pracma]; }; TangPoemR = derive2 { name="TangPoemR"; version="0.1.0"; sha256="06w5gg36mx0vdagkhy7rskgjv2d3irr0d3nkjw26vxp25x1py4sf"; depends=[jiebaR]; }; TapeR = derive2 { name="TapeR"; version="0.5.0"; sha256="161qwwqcq94j3h49k6fn6g146hczpaq6vygai5kwl6i8wpdfzc5a"; depends=[nlme pracma]; }; Tariff = derive2 { name="Tariff"; version="1.0.5"; sha256="1mdbc6yyaddkyj617kx93d2737gijh063v8w8jqw4lwmbwyc4a4w"; depends=[]; }; - TauP_R = derive2 { name="TauP.R"; version="1.5"; sha256="02vk9rj8yx4n2pihgk93bs2f9wkpkyfqm2kp7ixj4wpa29a0iq6v"; depends=[]; }; TauStar = derive2 { name="TauStar"; version="1.1.4"; sha256="06bb6570mqzfbjw2qp4bjl4a1bdpwsvcr0vw2y4l1x444m670ds1"; depends=[Rcpp RcppArmadillo]; }; TaxicabCA = derive2 { name="TaxicabCA"; version="0.1.1"; sha256="0izjf6vrdjvs9axvafr2mamr157i8w6d7m5sfjch1p5c174cpr9c"; depends=[]; }; Taxonstand = derive2 { name="Taxonstand"; version="2.4"; sha256="0zph4618bwjfvx41ap9d2534kknbni216y90nmcvaniskw4ixm7d"; depends=[pbapply]; }; @@ -5421,18 +5265,18 @@ in with self; { TensorClustering = derive2 { name="TensorClustering"; version="1.0.2"; sha256="094pk4v78d97sanrkirk0dyhy6w2i43imcw21q2r76w11d62w7k7"; depends=[abind combinat MASS mvtnorm pracma Rcpp rTensor tensr TRES]; }; TensorComplete = derive2 { name="TensorComplete"; version="0.1.0"; sha256="06lr0blkf5pv1zwlffn7m0xxscjii4jg930nkzrh2k7dnbka6vsx"; depends=[MASS pracma tensorregress]; }; TensorTest2D = derive2 { name="TensorTest2D"; version="1.1.1"; sha256="1yx1ggsbximbsrwimyg7jblbqr0f75z278f38hg61qjxzf9m4ndk"; depends=[]; }; - Ternary = derive2 { name="Ternary"; version="2.0.0"; sha256="1qkf54h3pg2zjbmhas8b2jxizqd2z626qivdpirjypvzp9243458"; depends=[shiny viridisLite]; }; + Ternary = derive2 { name="Ternary"; version="2.1.0"; sha256="0pzpi0ani22hv91bksd89asjayb66bc344a2gh23k5wfj8yn6cb0"; depends=[shiny sp viridisLite]; }; TesiproV = derive2 { name="TesiproV"; version="0.9.2"; sha256="00igkm0y9v363djhig4ydn3bfadqf6rrrdhkai2pl1w876xk2ydw"; depends=[edfun ggplot2 gridExtra nloptr pracma]; }; TestCor = derive2 { name="TestCor"; version="0.0.2.2"; sha256="01ndiqi0z672ymm2bid0r0cqz8fqd9268xgmmq74z3agj81l5c5j"; depends=[MASS Rcpp RcppArmadillo]; }; TestDataImputation = derive2 { name="TestDataImputation"; version="2.3"; sha256="11acpw9vjar6g8n9cifpfs4208j1hqqp15j59mr9pnfwq747hw2z"; depends=[Amelia mice]; }; - TestDesign = derive2 { name="TestDesign"; version="1.3.1"; sha256="0qsdsniaw7w2wd7vsfmw5ib86822qdji5r6yyl293dcg7pmrvsa8"; depends=[crayon foreach logitnorm lpSolve Rcpp RcppArmadillo]; }; + TestDesign = derive2 { name="TestDesign"; version="1.3.2"; sha256="1wpv83rh8zwcys2fnd18kxw5zpvhch53kjqq8r2x7rr2ddvjwkd6"; depends=[crayon foreach logitnorm lpSolve Rcpp RcppArmadillo]; }; TestDimorph = derive2 { name="TestDimorph"; version="0.4.1"; sha256="09r265mmr3bk78pqca30n9bz62p6822mg0nhrfaip2lxhl3bfqcw"; depends=[caret corrplot cutpointr dplyr ggplot2 Morpho multcompView tidyr tmvtnorm truncnorm]; }; TestFunctions = derive2 { name="TestFunctions"; version="0.2.0"; sha256="018nkz8r6vqahrzq3d588i3ffb1bmd1pdk87j4ivcdsx99mq15sn"; depends=[]; }; TestGardener = derive2 { name="TestGardener"; version="2.0.0"; sha256="1n38y2b3r0xf44jasga67cg820f1llb52farkv8dnp4v7bzld6zs"; depends=[dplyr fda ggplot2 ggpubr knitr pracma rgl rmarkdown stringr tidyr utf8]; }; TestScorer = derive2 { name="TestScorer"; version="1.7.2"; sha256="006c3g3gx55mfr93srldwvgz5vm6nkr3f57yi4qg6krn0d32865f"; depends=[]; }; TestingSimilarity = derive2 { name="TestingSimilarity"; version="1.1"; sha256="1iq0wh13rl6rby44ql4d286r1akzwmbpsvnq9p8lkl8709z0d34w"; depends=[alabama DoseFinding lattice]; }; TexExamRandomizer = derive2 { name="TexExamRandomizer"; version="1.2.3"; sha256="0l0vpx4rkib2m8hwhwy9j8pqyf7gpb9qg8wpnh3238snwpadgy3a"; depends=[assertthat jsonlite Rcpp stringr]; }; - TextForecast = derive2 { name="TextForecast"; version="0.1.2"; sha256="0yj2m22imzllz07wx04nar2mfpyl06jiq0ya1nwgaq74kaiym42p"; depends=[doParallel dplyr forcats ggplot2 glmnet Matrix pdftools plyr pracma RColorBrewer tidyr tidytext tm udpipe wordcloud]; }; + TextForecast = derive2 { name="TextForecast"; version="0.1.3"; sha256="0fjywwifkxpfyqhq6yrjy0ipnfr3lfgb179w993qj8f9nmdclrw1"; depends=[doParallel dplyr forcats forecast ggplot2 glmnet Matrix pdftools plyr pracma RColorBrewer tidyr tidytext tm udpipe wordcloud]; }; TextMiningGUI = derive2 { name="TextMiningGUI"; version="0.3"; sha256="0hl4rswc3icwf11idk9ydrbd3ghz6mb1vnabknal0fxffpdi37dd"; depends=[dplyr ggplot2 ggwordcloud RColorBrewer slam syuzhet tibble tidyr tidytext tm]; }; ThankYouStars = derive2 { name="ThankYouStars"; version="0.2.0"; sha256="0r77ns3102wj1wvrfsa06l427imxyfhigpbs36cdxl2j87qrjzl6"; depends=[httr jsonlite]; }; ThermIndex = derive2 { name="ThermIndex"; version="0.2.0"; sha256="0s9d55577dq61qixwwfwmqc2k2c8my00j2ng97ng42cw0jc7aylm"; depends=[]; }; @@ -5447,13 +5291,12 @@ in with self; { ThresholdROC = derive2 { name="ThresholdROC"; version="2.9.0"; sha256="1mzz05aqq6crcfm5bbv0gbpvndk0yy1lf4fxz8zva790g16cilq0"; depends=[ks MASS numDeriv pROC]; }; TiPS = derive2 { name="TiPS"; version="1.1.1"; sha256="1bdkd7x4g1dfiw6bs59gz79kdqkz02hvqbh3bgcd5gxwad5ka5zp"; depends=[gtools inline Rcpp stringr]; }; TickExec = derive2 { name="TickExec"; version="1.1"; sha256="0v0m0wi49yw0ply19vnirl2zwnk61sxalx24l8cadvkssgs13509"; depends=[]; }; - TiddlyWikiR = derive2 { name="TiddlyWikiR"; version="1.0.1"; sha256="0vwwjdmfc8c0y2gfa8gls1mzvp29y39c9sxryrgpk253jj9px1kr"; depends=[]; }; TideCurves = derive2 { name="TideCurves"; version="0.0.5"; sha256="1cnfnmwmlicsi243058zq3302niwk2l1agrrjy4k7rf1v7gfy6xx"; depends=[chron data_table fields]; }; TideHarmonics = derive2 { name="TideHarmonics"; version="0.1-1"; sha256="1g1v99gh6mns4l8ipmw7kpalbk07m92ybcqjq7b0wsjmdvs1y67s"; depends=[]; }; TideTables = derive2 { name="TideTables"; version="0.0.3"; sha256="0xfwikz9f58pw1j5vp45wp44lbr8b8ijlac474nzahq46d411afp"; depends=[chron data_table]; }; Tides = derive2 { name="Tides"; version="2.1"; sha256="0da3z010ali83qf8mf1znicqv8vvsa5r93mc40ax60ln2w33nlrm"; depends=[]; }; TidyConsultant = derive2 { name="TidyConsultant"; version="0.1.0"; sha256="1ipv0nx0xmba62c7qjgadpjsr850d9dl0z5zjkh1rj6kfxdgiis2"; depends=[autostats badger framecleaner pacman presenter tidybins validata]; }; - TidyDensity = derive2 { name="TidyDensity"; version="1.0.1"; sha256="1hfcqp0iqq93k8jhgnzmf5ha4418pbdqys2dpwmpwyc502kxh4wc"; depends=[actuar dplyr ggplot2 magrittr plotly purrr rlang stringr tidyr]; }; + TidyDensity = derive2 { name="TidyDensity"; version="1.1.0"; sha256="1ifyddrr9syn4fq365wmv4y11917zqp700bm1wyybg0v8zha8003"; depends=[actuar dplyr ggplot2 magrittr nloptr patchwork plotly purrr rlang stringr survival tidyr]; }; TidyMultiqc = derive2 { name="TidyMultiqc"; version="1.0.2"; sha256="0acgq3npl7l2j3wv9gxlnkajb7sjacnsaxh3p4jrcqvam173bkps"; depends=[assertthat dplyr jsonlite magrittr purrr rlang stringr tibble]; }; TileManager = derive2 { name="TileManager"; version="0.4.1"; sha256="0pcskdqxxm07j47bw1j4d3jqf64pk0jqwcp5379hnpi6kr7f5gvh"; depends=[APfun raster rgeos sp XML]; }; TimeProjection = derive2 { name="TimeProjection"; version="0.2.0"; sha256="04yr4cg2khkw9n3y3qk0ni1327k4pxm09zz2xg8mpjdvgi4p9yi3"; depends=[lubridate Matrix timeDate]; }; @@ -5461,6 +5304,7 @@ in with self; { TimeVTree = derive2 { name="TimeVTree"; version="0.3.1"; sha256="124kg9zcq4b2j4qvg9f6gykbmzf69qjnnw54nv213ip2h4rdkv32"; depends=[survival]; }; Tinflex = derive2 { name="Tinflex"; version="2.1"; sha256="0asvd72rdrk0kkq7d7lynkkmazia4nvj47n4rcqv3cmyd5477gjl"; depends=[]; }; TipDatingBeast = derive2 { name="TipDatingBeast"; version="1.1-0"; sha256="07lw6jnr76qrxwrwv90hi5ih2xf6g4sz4hfapk5vf1y3ayfskkl0"; depends=[DescTools mclust TeachingDemos]; }; + TippingPoint = derive2 { name="TippingPoint"; version="1.2.0"; sha256="00m7v94rr3xpqw7r0jgs4g7ylxjpbbnzihc5jniw7m876yxa17kw"; depends=[ggplot2 RColorBrewer reshape2]; }; Tlasso = derive2 { name="Tlasso"; version="1.0.2"; sha256="1svjl2va3vpa1m13wmyy3bpx76xxivalwprzbaavwxf8lgk34wgr"; depends=[expm huge igraph rTensor]; }; TmCalculator = derive2 { name="TmCalculator"; version="1.0.3"; sha256="1zrsndpdl9bcl1w6szz8rdzadk7jsbd14fajnndliz9fra1ra7xg"; depends=[]; }; Tmisc = derive2 { name="Tmisc"; version="1.0.0"; sha256="1zs7zxawl13pils9hff0i5aplxy32ccp27jcmjdh39lgf083s3v3"; depends=[dplyr magrittr rstudioapi tibble]; }; @@ -5468,6 +5312,7 @@ in with self; { ToolsForCoDa = derive2 { name="ToolsForCoDa"; version="1.0.6"; sha256="1c37xv8h4jycnn9cnxlvby3p8hl3gfp4bdsbxm06bb323qj774pd"; depends=[calibrate HardyWeinberg MASS]; }; TopDom = derive2 { name="TopDom"; version="0.10.1"; sha256="1rryfnwvdlpdrjgs6sciy91cxfp4jykll0swclasydjvj4n642i6"; depends=[ggplot2 matrixStats reshape2 tibble]; }; TopKLists = derive2 { name="TopKLists"; version="1.0.7"; sha256="0xwp926l8mr0j3lfxy2077d1qs150iid6v7i7015wqzif948jkxz"; depends=[gplots Hmisc]; }; + TopSisWM = derive2 { name="TopSisWM"; version="1.0.1"; sha256="127kbvwmhan93dx0d5qpp0khkfj9k3m36nyfaa4m0l1zcqfr5aqg"; depends=[]; }; TopicScore = derive2 { name="TopicScore"; version="0.0.1"; sha256="1x6s3yn25rj8mbd25yi7f2rz0nwg8n0l1vs6r250kyjb17d2javm"; depends=[combinat Matrix quadprog RSpectra slam]; }; TotalCopheneticIndex = derive2 { name="TotalCopheneticIndex"; version="2.0.1"; sha256="0i21g7zzad973802kfp8s638d3g70c4vkrm59i9frb71apvkljk2"; depends=[TreeTools]; }; TouRnament = derive2 { name="TouRnament"; version="0.2.5"; sha256="09i0frzzxi5ymjlvh81rmisxh35amrvhxbkjq5351fhlpf1n977z"; depends=[]; }; @@ -5483,15 +5328,14 @@ in with self; { TransModel = derive2 { name="TransModel"; version="2.3"; sha256="1wyg3cn7wp1jird16n88ygikf7qpqv3xhnyj3sv4l7gmwvjp5v5a"; depends=[MASS survival]; }; TransP = derive2 { name="TransP"; version="0.1"; sha256="0p6pfcp8qjdah0lfhx0a396nxjzp3ckpda9hl3snpppx79iyww55"; depends=[]; }; TransPhylo = derive2 { name="TransPhylo"; version="1.4.5"; sha256="0g92kwi1nlmpc8m4pc9kv9xhczryr2kn9icfr3js7da7vy8g50xy"; depends=[ape Rcpp]; }; - Tratamentos_ad = derive2 { name="Tratamentos.ad"; version="0.2.2"; sha256="0w8bgkinnawdp3h6nhqypc7xg93y4nnk5hczijys713a4bv26gb2"; depends=[crayon]; }; + Tratamentos_ad = derive2 { name="Tratamentos.ad"; version="0.2.3"; sha256="1wyjxh7q7g6j6bkd33kn70vzk88im6v5a4hp80jm43cnl4wmissh"; depends=[crayon]; }; TreatmentSelection = derive2 { name="TreatmentSelection"; version="2.1.1"; sha256="1pw64hx697jg2f1r2zd8y98g3ivj2gm8fnixcjfn4drsd0xixb4p"; depends=[binom ggplot2 survival]; }; TreeBUGS = derive2 { name="TreeBUGS"; version="1.4.7"; sha256="0cwhgphdk0zndnqx0qcq42zajhwvgs9myg9dmm6dnp0ik0g5syqa"; depends=[coda hypergeo logspline MASS Rcpp RcppArmadillo rjags runjags]; }; TreeDep = derive2 { name="TreeDep"; version="0.1.3"; sha256="0ja2hp9sxzybac6dqdsns5q1rj12swl240znsnsffg9mkvzhq6rl"; depends=[ggplot2 lubridate]; }; TreeDiagram = derive2 { name="TreeDiagram"; version="0.1.1"; sha256="03kn9h37wgx300szzxmg21zc5iz3a9v8f2ydzv6dv6rhpa7yn0v5"; depends=[ape cowplot ggplot2 stringr tree]; }; TreeDimensionTest = derive2 { name="TreeDimensionTest"; version="0.0.2"; sha256="1bwvspjvc1cragbsrc05vhwk0zmfj36r9piqbj0vgahpjb4cswn9"; depends=[fitdistrplus igraph mlpack nFactors RColorBrewer Rcpp Rdpack]; }; TreeDist = derive2 { name="TreeDist"; version="2.4.0"; sha256="0k1q6abjihksrza5s4b1vzki5pzvjyvkx91ycamqjk4l4gz91xq0"; depends=[ape cli colorspace memoise phangorn Rcpp Rdpack shiny shinyjs TreeTools]; }; - TreePar = derive2 { name="TreePar"; version="3.3"; sha256="1sm518b1b4b1p0n5979qzvi2nacxpp3znbg9n75pf2a8z8wy6p4l"; depends=[ape deSolve Matrix subplex TreeSim]; }; - TreeSearch = derive2 { name="TreeSearch"; version="1.1.1"; sha256="1jd7mphdm64dgj73ncksccsx4f3mph9m8sl6lr8yj696yc43xj80"; depends=[ape cli cluster fastmatch future promises protoclust Rcpp Rdpack Rogue shiny shinyjs TreeDist TreeTools]; }; + TreeSearch = derive2 { name="TreeSearch"; version="1.1.2"; sha256="11bpa926asgjhrb32bz5hsl075zp9basb694gjsh347rff2yv7kz"; depends=[ape cli cluster fastmatch future promises protoclust Rcpp Rdpack Rogue shiny shinyjs TreeDist TreeTools]; }; TreeSim = derive2 { name="TreeSim"; version="2.4"; sha256="0nmzx2723n1f5lr951zz2ih2gnpfim5qzihlayhpf181z1qijv93"; depends=[ape geiger]; }; TreeSimGM = derive2 { name="TreeSimGM"; version="2.5"; sha256="125c9rim272h0dfyygmmijz8dcnch3g9wy1ngki77dyrmdl77yfx"; depends=[ape TreeSim]; }; TreeTools = derive2 { name="TreeTools"; version="1.7.1"; sha256="1ckhhxshvb8kd94p6y797kl0n14n6zf9yss0m9jmn03g24xz9iih"; depends=[ape bit64 colorspace fastmatch lifecycle R_cache Rcpp Rdpack]; }; @@ -5503,7 +5347,7 @@ in with self; { TriadSim = derive2 { name="TriadSim"; version="0.3.0"; sha256="0r9p50vw2gcbm02vl24q4g1vj46ll0v1vvxi2ip1k73hymv6pz3g"; depends=[doParallel foreach snpStats]; }; TrialSize = derive2 { name="TrialSize"; version="1.4"; sha256="0k162n3jr2ixdl3pp90izdr83z14hj70jb9mrfw3iqz0pczp2cpj"; depends=[]; }; TrioSGL = derive2 { name="TrioSGL"; version="1.1.0"; sha256="0xzyv1vppw0v1xjpf83nnv1sx1xy7197ay6l7dzvr0vllappdam9"; depends=[]; }; - TripleR = derive2 { name="TripleR"; version="1.5.3"; sha256="13s1vlmr4sqa2sq2fbcld86bh3g73yb204aawbks11rjblwzvb0h"; depends=[ggplot2 plyr reshape2]; }; + TripleR = derive2 { name="TripleR"; version="1.5.4"; sha256="1al8cihrjz931gjn3bf94h0nd7a9hc1cmf50bkikj35vwy5kaxij"; depends=[ggplot2 plyr reshape2]; }; TropFishR = derive2 { name="TropFishR"; version="1.6.3"; sha256="0nkw7dcb2kvgvvfla6ns60n460wsamwcp88281q6lyb6yb8k14bv"; depends=[doParallel GA GenSA MASS Matrix msm reshape2]; }; TrtCombo_FactorialExp_SR = derive2 { name="TrtCombo.FactorialExp.SR"; version="4.0.4"; sha256="1kc5nqivsia801hdll5zcl4w6ayx7pabx7xz70l75h1f966ahnr7"; depends=[]; }; TrueSkillThroughTime = derive2 { name="TrueSkillThroughTime"; version="0.1.0"; sha256="1ak7w10qss1jlf8gy4sri678nqcw6rc79kwr6anqcjxick1000j9"; depends=[hash]; }; @@ -5522,13 +5366,12 @@ in with self; { TwoCop = derive2 { name="TwoCop"; version="1.0"; sha256="1ycxq8vbp68z82r2dfg2wkc9zk3bn33d94xay20g2p55lnzl2ifd"; depends=[]; }; TwoPhaseInd = derive2 { name="TwoPhaseInd"; version="1.1.2"; sha256="1ifdj17rlr8nd0pqpcqi6835ymdhngif279i27s6lvwha924l81c"; depends=[survival]; }; TwoRegression = derive2 { name="TwoRegression"; version="0.1.2"; sha256="0qr9zrfmbh4c4207gvwa384q5njjx6nsl6lc58d25m8bkfalifpi"; depends=[data_table dplyr magrittr seewave]; }; - TwoSampleTest_HD = derive2 { name="TwoSampleTest.HD"; version="1.0"; sha256="0xdib7hwbpy549pxihai8dpy91h94wwl3b76jn7p0m15ky7z18df"; depends=[]; }; + TwoSampleTest_HD = derive2 { name="TwoSampleTest.HD"; version="1.1"; sha256="0f6jrjw7794zc5d15lab7ps7dpifmh3yvhd8ypqb6shjlkwri64x"; depends=[]; }; TwoStepCLogit = derive2 { name="TwoStepCLogit"; version="1.2.5"; sha256="050y7na91izg36gkwd8yn8rx3r39dk6qlvhd3137f3jnk4v00bck"; depends=[survival]; }; TwoWayFEWeights = derive2 { name="TwoWayFEWeights"; version="0.1.0"; sha256="0zjbh24jm77vj62rw433dqy57m0hciaw1l2l7x6hpzn34iggdwwv"; depends=[dplyr estimatr fixest rlang stringr]; }; - UBCRM = derive2 { name="UBCRM"; version="1.0.1"; sha256="1h9f8wlxdgb67qqqnfhd9gfs4l2cq84vajhcb0psva0gwdd1yf6i"; depends=[]; }; UBL = derive2 { name="UBL"; version="0.0.7"; sha256="1zppc8mgmj4ymxfdvhqiirlf80wh65y58wqm92fgjdn7s06v5skf"; depends=[automap gstat MBA randomForest sp]; }; UCR_ColumnNames = derive2 { name="UCR.ColumnNames"; version="0.1.0"; sha256="1nwwq93f60r9aik51l7mzckg81f81nz5kgzynyzp5sm4y2wmpzwn"; depends=[]; }; - UCSCXenaShiny = derive2 { name="UCSCXenaShiny"; version="1.1.5"; sha256="0x2nlf5s4456yq2k0m1m12mngln9ny65vjm4c7jmdk4ldq14x37s"; depends=[dplyr ezcox forcats ggplot2 ggpubr magrittr ppcor psych purrr shiny stringr tibble tidyr UCSCXenaTools]; }; + UCSCXenaShiny = derive2 { name="UCSCXenaShiny"; version="1.1.7"; sha256="1yki26xziwxqvpmqac9qzdy2886hh5swcy14a92x1p1x568pvcyc"; depends=[dplyr ezcox forcats ggplot2 ggpubr magrittr ppcor psych purrr shiny stringr tibble tidyr UCSCXenaTools]; }; UCSCXenaTools = derive2 { name="UCSCXenaTools"; version="1.4.7"; sha256="1s3x9vmvnb0g3fmrgjw636g3nhshbgkv0g2dyrk347bv7bdj52zg"; depends=[digest dplyr httr jsonlite magrittr readr rlang]; }; UComp = derive2 { name="UComp"; version="2.2.2"; sha256="024fmarngqmj8db7rkah2cnsix3m0zqz153j5585caij302v8rkl"; depends=[Rcpp RcppArmadillo]; }; UKB_COVID19 = derive2 { name="UKB.COVID19"; version="0.1.3"; sha256="053hsdaa7xnzk95bdp0i1jr6pzq50zvfn1m5sm0znsrk59m5xhgm"; depends=[data_table dplyr here magrittr questionr tidyverse]; }; @@ -5536,6 +5379,7 @@ in with self; { UKgrid = derive2 { name="UKgrid"; version="0.1.3"; sha256="1x44iry2j5qbvd8ac9rv9dmg60hbhry2v4jj9hmm49bx10iwl9h2"; depends=[data_table dplyr lubridate magrittr tsibble xts zoo]; }; UMR = derive2 { name="UMR"; version="1.1.0"; sha256="05g2gk7bmhzyill6fgq396yk0yi7qz4mdcy3cfzzx5nyr11rc8a7"; depends=[decon distr trust]; }; UNCLES = derive2 { name="UNCLES"; version="2.0"; sha256="0c61sm09dh0yfrjrjjnizg7qrf8xgc1zdldwhjh64kq8k8g5wa69"; depends=[class kohonen pdist]; }; + UNF = derive2 { name="UNF"; version="2.0.8"; sha256="1gag7yqh5zs4azds0axlkpksymakw19s4n50pnhx7k6m9hgcbdgh"; depends=[base64enc digest]; }; UNPaC = derive2 { name="UNPaC"; version="1.1.0"; sha256="12w6vjvkzivnqa6jd75dwr8h8d8xbc2519pqnqw9fk3yanqzx9rk"; depends=[huge PDSCE]; }; UPCM = derive2 { name="UPCM"; version="0.0-3"; sha256="1apah04qdgvxxf6q6xr53716pcrmds86sn8f7ykxj93ggg8k0bvl"; depends=[cubature ltm mvtnorm numDeriv Rcpp RcppArmadillo statmod]; }; UPG = derive2 { name="UPG"; version="0.2.2"; sha256="01w54qbbyiwlw1dymi5gmxd26vds1am7r32p3gpq2ybfghk9kxbw"; depends=[coda ggplot2 knitr matrixStats mnormt pgdraw Rcpp RcppArmadillo RcppProgress reshape2]; }; @@ -5545,7 +5389,6 @@ in with self; { USAboundaries = derive2 { name="USAboundaries"; version="0.4.0"; sha256="0wwaywg01vz8hmwm58bnf86m8yqivi53bww5y3ycg891msnjwrgr"; depends=[]; }; USP = derive2 { name="USP"; version="0.1.2"; sha256="1fngs82r1xbym8qa1lj9jv1i57r3nx9rr093nfpjl82f7r0kr3sn"; depends=[Rdpack]; }; UScancer = derive2 { name="UScancer"; version="0.1-2"; sha256="0p1kxw1phqq598ljk3njznc9kmgscc8gmwdrvx1scba9rr6n61kl"; depends=[rgdal]; }; - UScensus2000cdp = derive2 { name="UScensus2000cdp"; version="0.03"; sha256="143hqnzdla3p31n422ddzaaa34wc6xnnhil4y53m4qydyg407700"; depends=[foreign maptools sp]; }; UScensus2000tract = derive2 { name="UScensus2000tract"; version="0.03"; sha256="11ppw75k8zghj7xphx5xyl3azsdsyd142avp0la2g941w6f8l2n1"; depends=[foreign maptools sp]; }; UScensus2010 = derive2 { name="UScensus2010"; version="0.20.0"; sha256="0dby532dmmhaz7gisihg4dn70jyx5llfvm2zl2h0pxyqrxvm69d2"; depends=[foreign maptools sp]; }; USgas = derive2 { name="USgas"; version="0.1.1"; sha256="1yx5qc7ilb1g2cv9w35ryw778qbi9fs0licxc2xcp5fbp709pd65"; depends=[]; }; @@ -5567,19 +5410,19 @@ in with self; { UnitStat = derive2 { name="UnitStat"; version="1.1.0"; sha256="185ivm4kg6hzqx3srk1shvpd5vlc0akn1sbg3wqcdsk2i2x6vhhm"; depends=[lmtest]; }; UnivRNG = derive2 { name="UnivRNG"; version="1.2.3"; sha256="14z2yqv14sv16ycf7jf2kkp8pqn12d9lq4l568vmdm10qrl5x39d"; depends=[]; }; UpSetR = derive2 { name="UpSetR"; version="1.4.0"; sha256="007i0njnjjy7vbrxabwav7a1kk2n0hn2mkvqsdzzfk10ckp5y7im"; depends=[ggplot2 gridExtra plyr scales]; }; + UpSetVP = derive2 { name="UpSetVP"; version="1.0.0"; sha256="1v6djfwaix978vzfjnj0vd3r0m3svfqkn9aqnf9qz2xsjk43m9zr"; depends=[ggplot2 patchwork rdacca_hp]; }; UsingR = derive2 { name="UsingR"; version="2.0-7"; sha256="17ljllslhfmi80yj1336lx9pmzy2i8zdb6byky5yay1lry7s1g30"; depends=[HistData Hmisc MASS]; }; UtilityFrailtyPH12 = derive2 { name="UtilityFrailtyPH12"; version="1.0"; sha256="06f5gmwwk1r14ab6v5jcxz0pmdph7ffi4y57mjg9byn7pjnibflk"; depends=[bindata mvtnorm Phase123 Rcpp RcppArmadillo]; }; - V8 = derive2 { name="V8"; version="4.1.0"; sha256="15ylzcxlhkba99cccw5rvhwhg9i4zcax2fhmr03w8g4fdhbd3n89"; depends=[curl jsonlite Rcpp]; }; + V8 = derive2 { name="V8"; version="4.2.0"; sha256="0hs7ajjw6y3q7mp7z00a9712y4cn6wgcnk5dbjbzlc6cfk4zsqkc"; depends=[curl jsonlite Rcpp]; }; VALERIE = derive2 { name="VALERIE"; version="1.1.0"; sha256="15z8234jhh7hv3gijrvy8hap6gdgvm6qll9b00qbji7vyc3dg4pg"; depends=[GenomicAlignments GenomicRanges ggplot2 ggplotify ggpubr IRanges pheatmap plyr Rsamtools scales]; }; VAM = derive2 { name="VAM"; version="1.0.0"; sha256="04lq8i4zwdc9a4n4hvabdyv4a4cmmqbf534cdnnck7jc0dk5rphr"; depends=[MASS Matrix]; }; VAR_etp = derive2 { name="VAR.etp"; version="0.7"; sha256="0py5my3ilhcmz44m15hh0d219l9cz7rda4a9gbmf8wh9cgvvj1s3"; depends=[]; }; + VARDetect = derive2 { name="VARDetect"; version="0.1.6"; sha256="1yrlyg4b53bdmfjcqi07l0gr3f01h8jwj6g6av3plyk96cvl4svb"; depends=[igraph lattice MTS mvtnorm pracma Rcpp RcppArmadillo sparsevar]; }; VARMER = derive2 { name="VARMER"; version="1.0.0"; sha256="0qym31jpmb2dyrqsk1s6wp1c3b15mf79lrrk46p6hkmdddkxqgnj"; depends=[cluster deldir gstat hydroGOF Metrics pracma raster rgl sf tictoc zoo]; }; - VARSEDIG = derive2 { name="VARSEDIG"; version="2.1"; sha256="1cxp80i5160c6kx666nl0gxs8ypfmkzxr2gqph5a9v6ibiq801sj"; depends=[]; }; VARshrink = derive2 { name="VARshrink"; version="0.3.1"; sha256="09hysmxxawcbyfx6bia546aqydryl2r5p3ai7bvl6ghdckw5mnpl"; depends=[ars corpcor MASS mvtnorm strucchange vars]; }; VARsignR = derive2 { name="VARsignR"; version="0.1.3"; sha256="09mnf9hvsi4wx1c81yq97mzggwk6s7nka7awrws63icjybqjmra9"; depends=[HI minqa mvnfast]; }; VARtests = derive2 { name="VARtests"; version="2.0.5"; sha256="0gmm2qrrl4v5vx0nhiwq5brvanhybpb2q0zlf4dihramhjjbwyar"; depends=[Rcpp RcppArmadillo sn]; }; VBLPCM = derive2 { name="VBLPCM"; version="2.4.8"; sha256="1yqwhmk0ziy0l3hvvpi2s62p43gm4lavl3dagn3647lrx99nmngn"; depends=[ergm mclust network sna]; }; - VBTree = derive2 { name="VBTree"; version="0.1.0"; sha256="0g0lyvclnfmd3zc8yhcibhli0hyxrba6wb3hx039fsg80q7y02h4"; depends=[tensorA]; }; VBsparsePCA = derive2 { name="VBsparsePCA"; version="0.1.0"; sha256="0h1kzz7rjh4wn4nbq1v3r4f6nrmlh0lscww2vwfz886x1w2c9sys"; depends=[MASS pracma]; }; VC2copula = derive2 { name="VC2copula"; version="0.1.2"; sha256="1kbzscdblb3n7mkkhvd75h8hyd6xbfb0lcjgysvyip4v7zc7whvc"; depends=[copula VineCopula]; }; VCA = derive2 { name="VCA"; version="1.4.3"; sha256="0hqvqq8kvqgrli9426x9npy86nzgc3mhfgq45d8vm7ns3fc6zsay"; depends=[lme4 Matrix numDeriv]; }; @@ -5596,7 +5439,6 @@ in with self; { VGAMextra = derive2 { name="VGAMextra"; version="0.0-5"; sha256="11s7s2dm2yf5s9qbwbyavz01l9fk86grp4mlhrh8hd6lfmxxxcxm"; depends=[VGAM]; }; VHDClassification = derive2 { name="VHDClassification"; version="0.3"; sha256="1ij4h3gzxb9mm9q743kc3sg2q609mnqz6mhlrbim1wcjji2b7bv4"; depends=[e1071 lattice]; }; VIC5 = derive2 { name="VIC5"; version="0.2.4"; sha256="1q4ayvq0adln9vv3r05gc2rmkd2pbzrsqd8dsgmindzwqbxsps36"; depends=[foreach lubridate Rcpp RcppArmadillo]; }; - VIF = derive2 { name="VIF"; version="1.0"; sha256="0yvg6ikrcs7mhg0pavhcywrfysv7ylvnhxpc5sam86dbp69flx9x"; depends=[]; }; VIFCP = derive2 { name="VIFCP"; version="1.2"; sha256="0w41k25vss806m5vpwmmcfsmwaixmln0pliql3a6xlwsihha5i34"; depends=[]; }; VIGoR = derive2 { name="VIGoR"; version="1.1.0"; sha256="17hi133krdj03l0kfhnl2qgi5740aq6f68qqfn9jciwmadig63rq"; depends=[]; }; VIM = derive2 { name="VIM"; version="6.1.1"; sha256="0fbpm6y3hhiw8srnbc38k19b859jcqzsh78ib8yvj86gck5av0bm"; depends=[car colorspace data_table e1071 laeken magrittr MASS nnet ranger Rcpp robustbase sp vcd]; }; @@ -5612,12 +5454,10 @@ in with self; { VWPre = derive2 { name="VWPre"; version="1.2.4"; sha256="1hhpqxzh9h5dy45r04l1fa1k4a14s0m6z6fhfg22kpwpryszbc44"; depends=[dplyr ggplot2 mgcv rlang shiny tidyr]; }; VaRES = derive2 { name="VaRES"; version="1.0"; sha256="0gw05jiqgirhz3c8skbb07y4h44r6vi68gnd5y7ql455v0c2raza"; depends=[]; }; VancouvR = derive2 { name="VancouvR"; version="0.1.7"; sha256="12njm15ah307rsncnmckpx05d4cncqj0paa40xdgp7mfz821s36c"; depends=[digest dplyr httr purrr readr rlang sf tibble urltools]; }; - VarBundle = derive2 { name="VarBundle"; version="0.3.0"; sha256="0jfx9gkb3f29lgc0nrz3xc7m2ham0scx9lay7x5a6ira7crga6cr"; depends=[crayon dplyr glue magrittr R6 stringr tibble]; }; VarED = derive2 { name="VarED"; version="1.0.0"; sha256="16j9p2a143y4hqclsv1mig0fccrzjx2r0lll0wz8isjp9x1wzjv8"; depends=[]; }; VarRedOpt = derive2 { name="VarRedOpt"; version="0.1.0"; sha256="0h44m8850q4aksrqj11yr2a2qj37w8fhv0plpvdzcl087ifyj0g9"; depends=[]; }; VarReg = derive2 { name="VarReg"; version="1.0.2"; sha256="04235hr0r6sp7r3ccvcfb8l6p8yapcdrn6zl7mmvbyc4qb70gawh"; depends=[sn survival]; }; VarSelLCM = derive2 { name="VarSelLCM"; version="2.1.3.1"; sha256="03rg7zh1cq55vfc0ak6j7crs4n7fnbsxz8nllmplklx8wm47krf5"; depends=[ggplot2 mgcv Rcpp RcppArmadillo shiny]; }; - VarSwapPrice = derive2 { name="VarSwapPrice"; version="1.0"; sha256="12q2wp2cqi9q47mzbb7sc250zkjqkhs9z0h93ik0h63dv339abgj"; depends=[]; }; VarfromPDB = derive2 { name="VarfromPDB"; version="2.2.10"; sha256="09j8y6n0bwsj3n620nbni6b7f4pmb91q41770sfpc5v3l5i3jc7c"; depends=[curl RISmed stringi stringr XML XML2R]; }; VariableScreening = derive2 { name="VariableScreening"; version="0.2.0"; sha256="04j75081g88g5hjydcnl3jcf99zzbrhlbjmmzcprvrlm5i5i3k93"; depends=[energy expm gee MASS]; }; VarianceGamma = derive2 { name="VarianceGamma"; version="0.4-0"; sha256="0n3vmyxfn0sid6zax4n8508li7gnfdd4gghpf3i296dm3w8wn8ip"; depends=[DistributionUtils GeneralizedHyperbolic]; }; @@ -5625,7 +5465,7 @@ in with self; { Vdgraph = derive2 { name="Vdgraph"; version="2.2-2"; sha256="1q8l711zbrrj4h1wmpv93nbvlg8xi6kjv22zpidkck8ncpyyla80"; depends=[]; }; VecStatGraphs2D = derive2 { name="VecStatGraphs2D"; version="1.8"; sha256="0jjxdwcj0n6kk5l7hw4zibpikqxhkkik5819qv75z4gqdgg0fgch"; depends=[MASS]; }; VecStatGraphs3D = derive2 { name="VecStatGraphs3D"; version="1.6"; sha256="1pnpgnxdiis4kzwhh17k61aidyan5fp9rzqhvwf6gljb4csqsk54"; depends=[MASS misc3d rgl]; }; - VennDiagram = derive2 { name="VennDiagram"; version="1.7.1"; sha256="0yw54j9as0vf8ypnq4a3sl2w0lajri6s979f4y11hjzpgmr1m16b"; depends=[futile_logger]; }; + VennDiagram = derive2 { name="VennDiagram"; version="1.7.3"; sha256="0ilcxcp8qskmb5cp7fyb7i0qizg42lrx0ny8ws3if90kfrglghp7"; depends=[futile_logger]; }; VertexSimilarity = derive2 { name="VertexSimilarity"; version="0.1"; sha256="0f638y272dbmz5747wxqy9pxasxk3a9f9wf31gf297qx7268ab1m"; depends=[igraph]; }; VertexSort = derive2 { name="VertexSort"; version="0.1-1"; sha256="0n9m5l85ylin6756rsksak94nv0626qd7czhhj6plz4nfrr27sgl"; depends=[igraph snowfall]; }; VeryLargeIntegers = derive2 { name="VeryLargeIntegers"; version="0.1.8"; sha256="0yvm3kkc7ssk85ripdgbxj8gazqb1dfswgjy63c3gb135zi2cbqk"; depends=[Rcpp]; }; @@ -5634,10 +5474,10 @@ in with self; { VicmapR = derive2 { name="VicmapR"; version="0.1.8"; sha256="0lnpbbspsl1q4z2i4jmz7j3idqwdxrngpcavnppp68ajyz4i5xkr"; depends=[cli curl DBI dbplyr dplyr glue httr lubridate magrittr purrr rlang rvest sf xml2]; }; ViewPipeSteps = derive2 { name="ViewPipeSteps"; version="0.1.0"; sha256="0lcm7zzflbbjpb1mdy6pppdmg9gvlcn7hg42a4fgm0kxhniwnmyg"; depends=[dplyr rstudioapi tibble]; }; VineCopula = derive2 { name="VineCopula"; version="2.4.3"; sha256="05zajfncr9iyzpv98zw3ph2drxbnfjwjw8l244j49das6jkplwj2"; depends=[ADGofTest lattice MASS mvtnorm]; }; - VisitorCounts = derive2 { name="VisitorCounts"; version="1.0.0"; sha256="1i2msvr2mlwwlwp5zmr4i16svrbfix65ga9rsvc43gv7rg4ip7rd"; depends=[ggplot2 ggthemes Rssa tibble]; }; + VisitorCounts = derive2 { name="VisitorCounts"; version="1.0.1"; sha256="155ibah6qg5xdyp8vnpwgv0clqhr6ys3310dd9sipawz0730kcgw"; depends=[Rssa]; }; Visualize_CRAN_Downloads = derive2 { name="Visualize.CRAN.Downloads"; version="1.0.1"; sha256="0z2v2izn4aj3i6f5gh8r7pkrqpbb82bv9v4s4vqxgm066a51m4p2"; depends=[cranlogs htmlwidgets plotly]; }; VorteksExport = derive2 { name="VorteksExport"; version="0.1.8"; sha256="0r9wmd9bdarjkqmpwp85xz27nbyhjkcpxm8qb8bqjmxq4nds6nxx"; depends=[]; }; - Voss = derive2 { name="Voss"; version="0.1-4"; sha256="056izh1j26vqjhjh01fr7nwiz1l6vwr5z4fll87w99nc5wc4a467"; depends=[fields]; }; + Voss = derive2 { name="Voss"; version="0.1.5"; sha256="00f3ljm85z8gr1qyc6nj9g35ywzm78khy8r82wb5ys8fx68n0vwl"; depends=[fields]; }; VoxR = derive2 { name="VoxR"; version="1.0.0"; sha256="16r9ggc5x889g8rjqvp1q2kgf5asjzhykd1ldjy3ny9m48p501ad"; depends=[circular data_table dplyr fastcluster FNN geometry raster Rfast rgl]; }; VulnToolkit = derive2 { name="VulnToolkit"; version="1.1.4"; sha256="01m8spmd4na7mxgnplnnq3n4pab9349z2dk44b455vcadll0fsdi"; depends=[plyr XML]; }; W2CWM2C = derive2 { name="W2CWM2C"; version="2.2"; sha256="0544wnyyv8glv4ljldmaqgynpshd5bvsqwsz9q1071dfshhxki1v"; depends=[colorspace wavemulcor waveslim]; }; @@ -5652,7 +5492,7 @@ in with self; { WDI = derive2 { name="WDI"; version="2.7.6"; sha256="1466mcxn04qbs71r121h5v5jl5bfsjja2cg932rxnf9s9s261vkp"; depends=[RJSONIO]; }; WEE = derive2 { name="WEE"; version="1.0"; sha256="0i3h67p72lr708mwdw3rbzr1lqqr8n2dxv7f0bwyqzxv41sx1iz3"; depends=[doParallel foreach quantreg]; }; WEGE = derive2 { name="WEGE"; version="0.1.0"; sha256="17g4cgx0ajgj7lgxzi467cjbmbc47skyarcm88vqjc3i1j55dw12"; depends=[raster sf sp]; }; - WGCNA = derive2 { name="WGCNA"; version="1.70-3"; sha256="1m6b4a2xpb02c1ajndhk8qlqnhwxa7lkkwj6nzv3l618jy1kp15r"; depends=[AnnotationDbi doParallel dynamicTreeCut fastcluster foreach GO_db Hmisc impute matrixStats preprocessCore Rcpp survival]; }; + WGCNA = derive2 { name="WGCNA"; version="1.71"; sha256="027pkc4pyn9bifqbjs05318gvlm06mffw016j50n59wfi2g39x91"; depends=[AnnotationDbi doParallel dynamicTreeCut fastcluster foreach GO_db Hmisc impute matrixStats preprocessCore Rcpp survival]; }; WGScan = derive2 { name="WGScan"; version="0.1"; sha256="0jma6di9hbdimswdfm58568vahcjy46hbhb78idjsdz4bl9apvq3"; depends=[data_table MASS Matrix seqminer SKAT]; }; WINS = derive2 { name="WINS"; version="1.1"; sha256="0vsvrs74n1jkgsw2razfj207hin3yv60r05m6ypv9qqf1835s3rq"; depends=[copula ggplot2 ggpubr reshape2 stringr survival viridis]; }; WLasso = derive2 { name="WLasso"; version="1.0"; sha256="0q44ljdsqsnnwfnnsmyn3p65inbw0y71v7v5pp7cz2dzbhhpfzpw"; depends=[genlasso ggplot2 MASS Matrix tibble]; }; @@ -5672,8 +5512,9 @@ in with self; { WWGbook = derive2 { name="WWGbook"; version="1.0.2"; sha256="05dzgb2b1md981882sp85dvmrsak5v7gwkww1shqfm34zmk9dbkn"; depends=[]; }; WWR = derive2 { name="WWR"; version="1.2.2"; sha256="0ia1dd12r1l08s9nhgvk55jmqwv58jawm25gd2ni6wpa3mcmq02g"; depends=[inline]; }; WaMaSim = derive2 { name="WaMaSim"; version="1.0.0"; sha256="0sa7qd2bpn3sp06mlpissxxkfhg7j1d07nnwlnz7nyg7pivwnpan"; depends=[magrittr]; }; + WallomicsData = derive2 { name="WallomicsData"; version="1.0"; sha256="1bv2v0gjb6v5p7rmm8nc00xnkdw60552siyfhz4y60wm1cygclbq"; depends=[]; }; Watersheds = derive2 { name="Watersheds"; version="1.1"; sha256="1gn52nl0rr29pqq94gjasc4fi1kjxlrpjdkgm2x56j5jbd162drk"; depends=[lattice maptools rgeos sp splancs]; }; - WaveSampling = derive2 { name="WaveSampling"; version="0.1.1"; sha256="081pqxbrz8vsmjgammh0802frl8lqrw9z1svhdqjc65lqkwghh75"; depends=[Matrix Rcpp RcppArmadillo]; }; + WaveSampling = derive2 { name="WaveSampling"; version="0.1.3"; sha256="1r8fzvihpmpaak0pkcf9s1nkj6dlvj2maw30yflpifa6422y15va"; depends=[Matrix Rcpp RcppArmadillo]; }; WaveletANN = derive2 { name="WaveletANN"; version="0.1.0"; sha256="08qnx0lk2laiyx1q1wxj15j0yic65r7mbhr6lqbdllq30v4dcj88"; depends=[forecast fracdiff wavelets]; }; WaveletArima = derive2 { name="WaveletArima"; version="0.1.1"; sha256="19hz2q280m41qh3m9lx3i9p6p5fl6pw8r9b06xk6sn04hxbim8xx"; depends=[forecast fracdiff wavelets]; }; WaveletComp = derive2 { name="WaveletComp"; version="1.1"; sha256="07w2aa0jiflvxyqhgh48705hg8hjspd103jd00i2pcw2v42hwmf8"; depends=[]; }; @@ -5683,7 +5524,7 @@ in with self; { WaverR = derive2 { name="WaverR"; version="1.0"; sha256="084fhzggzm075w6wp2lqd3j0an21idhw8z5l8ynz4y96mpmn204a"; depends=[kimisc MASS]; }; Wcompo = derive2 { name="Wcompo"; version="1.0"; sha256="1rd7y86q8qi7w9878ng0zdk3zpxnjyzpmrm2mj5lm60hkd72xyrw"; depends=[survival]; }; WeMix = derive2 { name="WeMix"; version="3.2.1"; sha256="0y7xw7ardij56x4s2ls1vfa8a3pjl14jj5y987p3xx8pca409pp6"; depends=[lme4 Matrix minqa NPflow numDeriv Rmpfr statmod]; }; - WebAnalytics = derive2 { name="WebAnalytics"; version="0.9.4"; sha256="0g8xr9hjr64fq7671k0d824p2gsh57n69aqd64hjf8nhf019y8dv"; depends=[brew data_table digest fs ggplot2 reshape2 scales tinytex uaparserjs xtable]; }; + WebAnalytics = derive2 { name="WebAnalytics"; version="0.9.5"; sha256="1fas6pj9xqxdm2ln825bgghycn7226z6ha09d6a93w53m789dcby"; depends=[brew data_table digest fs ggplot2 reshape2 scales tinytex uaparserjs xtable]; }; WebGestaltR = derive2 { name="WebGestaltR"; version="0.4.4"; sha256="1rgf9s80hk35baiknrwgnqnhxssrcxdansgpvpyhqv07bqd472nn"; depends=[apcluster doParallel doRNG dplyr foreach httr igraph jsonlite Rcpp readr rlang svglite whisker]; }; WebPower = derive2 { name="WebPower"; version="0.6"; sha256="1gw6191v9sgycis3vyjznaaiyhmp0j23h9k8g8adchpyss7017ab"; depends=[lavaan lme4 MASS PearsonDS]; }; WeibullFit = derive2 { name="WeibullFit"; version="0.1.0"; sha256="1a80gcqbmvb1rz2dr2syy16wn6ixjn6l40gayys9zy8302hky9ir"; depends=[e1071 FAdist glue kSamples mixdist optimx R_methodsS3 R_oo sqldf xtable]; }; @@ -5696,15 +5537,14 @@ in with self; { WeightedROC = derive2 { name="WeightedROC"; version="2020.1.31"; sha256="1f43hwsabciraj1qxfh5wcqnnx1vvcf4pwqs376rcfd9161k15xv"; depends=[]; }; WgtEff = derive2 { name="WgtEff"; version="0.1.2"; sha256="1z8pndv43ssgmzldwaq0088lmf1g2mkmrbmzyaismcpngn9fqxsk"; depends=[]; }; WhatIf = derive2 { name="WhatIf"; version="1.5-10"; sha256="19w5qw123iahrx96379lrx8i7v3x2ck5dhklf58iw0dmj4pfy2kg"; depends=[lpSolve pbmcapply]; }; - WhiteStripe = derive2 { name="WhiteStripe"; version="2.4.0"; sha256="08lywd8jwx6cw7dqm7zxj291gifacymlk8ikjad9aw2f9jm6kap0"; depends=[mgcv neurobase oro_nifti]; }; - WienR = derive2 { name="WienR"; version="0.3-0"; sha256="1lhjcyn8qh23iq0v18m0hbq94nqrx12lsd49shj6wf3x220vf0d2"; depends=[]; }; + WienR = derive2 { name="WienR"; version="0.3-6"; sha256="1y5vdvh055pvphbjpva9bm2vidqv1gq1dnzpl3qwjrj9vvqgyqk5"; depends=[]; }; WikidataQueryServiceR = derive2 { name="WikidataQueryServiceR"; version="1.0.0"; sha256="1bl1nbhbmss8cj9ni7plsjs996n4rwqv6h8bh1zj4whs8z4fw50f"; depends=[dplyr httr jsonlite purrr ratelimitr readr rex WikipediR]; }; WikidataR = derive2 { name="WikidataR"; version="2.3.3"; sha256="120833b7zyq1rhmn9c8iv0j6br60af7gbn5lc4dil55qhh2lp9rx"; depends=[crayon dplyr Hmisc httr jsonlite pbapply progress readr stringr tibble WikidataQueryServiceR WikipediR]; }; WikipediR = derive2 { name="WikipediR"; version="1.5.0"; sha256="1w4ggq42vlq7zbrz3v9ripz9yscbd8m8as60q7cplpxn9zqfdl7q"; depends=[httr jsonlite]; }; WikipediaR = derive2 { name="WikipediaR"; version="1.1"; sha256="0fxk247jb82g0f3nmwraa4kvdpjxy5s4dcyzj9vkjw2lq8by3l0h"; depends=[httr XML]; }; WilcoxCV = derive2 { name="WilcoxCV"; version="1.0-2"; sha256="1kbb7ikgnlxybmvqrbn4cd8xnqrkwipk4xd6yja1xsi39a109xzl"; depends=[]; }; WinRatio = derive2 { name="WinRatio"; version="1.0"; sha256="0d064qq9zad9bdacldhicj3xhyrvp0fcqrxfj594yzra2qwgkx90"; depends=[dplyr magrittr Rcpp tidyselect tidyverse]; }; - WindCurves = derive2 { name="WindCurves"; version="0.1.3"; sha256="0bvbnrkdk0g0radgcw4zbhq6czpvq3f7f34x83qk09i8ngmwd28c"; depends=[drc imputeTestbench readbitmap]; }; + WindCurves = derive2 { name="WindCurves"; version="0.2"; sha256="1vvcp1g5a677g9zqssdkh3zdy646zdkzy75nqhy497bpcgw43q1b"; depends=[readbitmap]; }; WoodSimulatR = derive2 { name="WoodSimulatR"; version="0.5.0"; sha256="1dd8a0cqa1jdfh0aikm6r2w9iq3s14lwby2awazz9fzcnxs64f6y"; depends=[dplyr purrr rlang scales tibble tidyr]; }; WoodburyMatrix = derive2 { name="WoodburyMatrix"; version="0.0.1"; sha256="1yg61j8dw0yfz6lhz68vr5ndr7z0w3zgdw8hbbnxwfcpw759n8p1"; depends=[Matrix]; }; WordOfMouth = derive2 { name="WordOfMouth"; version="1.1.0"; sha256="199hnirbmwarn04ky1147x5c048j087rdml86qcp92kzp20679v3"; depends=[LambertW]; }; @@ -5736,14 +5576,13 @@ in with self; { YPPE = derive2 { name="YPPE"; version="1.0.1"; sha256="01q0l22nwfpld2wcygk5x28c2c6cv35hxy2fm1azn8bqsv7xy5il"; depends=[BH Formula MASS Rcpp RcppEigen rstan rstantools StanHeaders survival]; }; YPmodel = derive2 { name="YPmodel"; version="1.4"; sha256="177rzbd8k0356b8z2sbvl3x5cg2w9kr8ryf36laqijyayhcik093"; depends=[]; }; YRmisc = derive2 { name="YRmisc"; version="0.1.6"; sha256="1crms7dqmhj7br1a5p5j0j7p6sdfimnip31207i6g24f9jkkysv1"; depends=[ggplot2 gridExtra]; }; - YaleToolkit = derive2 { name="YaleToolkit"; version="4.2.2"; sha256="12wggdyz0wgnmxnqhp8bypyy1x1p50g49fwdzl2l43il44cdyv0g"; depends=[foreach iterators]; }; - Yamm = derive2 { name="Yamm"; version="1.3.1"; sha256="0av5q1vx2f8dvxv0br9w65qmw3zr3y4vja45g8qbqyfb3gkfclhn"; depends=[depth interp OjaNP pcaPP]; }; + YaleToolkit = derive2 { name="YaleToolkit"; version="4.2.3"; sha256="07rqi8j9gzrr4jj9h8mdnh5i251q8rwfdj4lbcmszp64pi09rkck"; depends=[foreach iterators]; }; YatesAlgo_FactorialExp_SR = derive2 { name="YatesAlgo.FactorialExp.SR"; version="4.0.4"; sha256="0jr2q2dla7dpf0ail0l8ar44cnaxrkvqc7cvsrsdgj97hr970lp9"; depends=[lubridate]; }; - YieldCurve = derive2 { name="YieldCurve"; version="4.1"; sha256="0w47j8v2lvarrclnixwzaq98nv1xh2m48q5xvnmk7j9nsv2l3p68"; depends=[xts]; }; Z10 = derive2 { name="Z10"; version="0.1.0"; sha256="02kxlzplmss68zj1z97fvpcjyhhpic9hlx8f5j3gqn3m1mqm1dja"; depends=[dplyr lubridate magrittr rjson stringr]; }; ZIBBSeqDiscovery = derive2 { name="ZIBBSeqDiscovery"; version="1.0"; sha256="12g9rga9z6318ni6x6q9hdqlgl93y2xn8vf3gc6sm97fz8pliswx"; depends=[mcc]; }; ZIBseq = derive2 { name="ZIBseq"; version="1.2"; sha256="13rjy4jl9wil6hhpra4qmdis0iyqxchzsf9l7q6r0dz1f7dpd2nq"; depends=[gamlss gamlss_dist nlme]; }; ZIM = derive2 { name="ZIM"; version="1.1.0"; sha256="0scyfjn4ilsvha3x41c3b8bcfi31hlhwm77wn2a8hj5dsvnnmzig"; depends=[MASS]; }; + ZINARp = derive2 { name="ZINARp"; version="0.1.0"; sha256="1s5nvxcc7nw2kz90i7fqw5fi2qzzbsm5ppn92695v44q38h8jw9s"; depends=[progress]; }; ZIPBayes = derive2 { name="ZIPBayes"; version="1.0.2"; sha256="0j56smgf44fki70jc6aypksbl70pyppc6s3xv82yrq5rndym077k"; depends=[MASS Rcpp]; }; ZIPFA = derive2 { name="ZIPFA"; version="0.8.1"; sha256="134pkdn4slhiv27rdkkmh2z7xch30ns0jhzxgd7r05bky0z1iri1"; depends=[doParallel foreach Matrix optimx trustOptim]; }; ZIprop = derive2 { name="ZIprop"; version="0.1.1"; sha256="1gvf6z7mx543a0hiqcknwhkplqa3mfmw3swi8n9vma10bqmgysx7"; depends=[data_table purrr rgenoud]; }; @@ -5751,17 +5590,14 @@ in with self; { ZVCV = derive2 { name="ZVCV"; version="2.1.1"; sha256="0gc76j9i8fkm2v638nyzzb1qxl4zmapbspkkaffb8gi5qyjja448"; depends=[abind BH dplyr glmnet magrittr mvtnorm Rcpp RcppArmadillo Rlinsolve]; }; ZeBook = derive2 { name="ZeBook"; version="1.1"; sha256="0v98kbz9njjdx60x9dn8hl8mc6x19i5knjyg2gkwfd667yy1rkl6"; depends=[deSolve triangle]; }; ZetaSuite = derive2 { name="ZetaSuite"; version="1.0.0"; sha256="0933ri4dz0nlxkgz0rqvp5yp38fikbdncb8bgviw7zgbfglaisgr"; depends=[dplyr e1071 ggplot2 gridExtra mixtools RColorBrewer reshape2 Rtsne scater]; }; - ZillowR = derive2 { name="ZillowR"; version="0.1.0"; sha256="1wrr58p76ps29fqzzwgfvfibxrvc72p2yzs5kc2rv1yxzzcpyxvb"; depends=[RCurl XML]; }; - ZipRadius = derive2 { name="ZipRadius"; version="1.0.1"; sha256="00q4a2bsajs5ns4vdm289iaj9mczxjn3ssyrnmg2z4wicr2ljizv"; depends=[dplyr geosphere ggplot2 magrittr rlang testthat]; }; + ZillowR = derive2 { name="ZillowR"; version="1.0.0"; sha256="1q0hdm654p6vkmajwrhx18ifm9sc4czdfd7cabhkqdky4p07c89r"; depends=[RCurl XML]; }; Zseq = derive2 { name="Zseq"; version="0.2.0"; sha256="06dndi2b1q79bmxax11bv0l5ifcz1mhpvbn90y6a6xymrgcq0ivi"; depends=[gmp]; }; - aCRM = derive2 { name="aCRM"; version="0.1.1"; sha256="0kzp568hd9c9a9qgniia5s5gv0q5f89xfvvwpzb197gqhs3x092v"; depends=[ada dummies kernelFactory randomForest]; }; - aGE = derive2 { name="aGE"; version="0.0.9"; sha256="17niwni6sd2mdvhskq6vfwplynh67hwq9ijrlgjvhkcslpb2ilp3"; depends=[MASS nlme survey]; }; aLFQ = derive2 { name="aLFQ"; version="1.3.6"; sha256="0kphpvhz36859f5l0k8mbf59g9871mynbs4ybdi0h5nm2cdjy9vx"; depends=[bio3d caret data_table lattice plyr randomForest reshape2 ROCR seqinr]; }; aMNLFA = derive2 { name="aMNLFA"; version="1.1.2"; sha256="1bks7g6zc8817gr4j1mxzmyhw23mwafb6816a26vylk8d9k9d315"; depends=[devtools dplyr ggplot2 gridExtra MplusAutomation plyr reshape2 stringi stringr]; }; aPCoA = derive2 { name="aPCoA"; version="1.3"; sha256="0ybp7jd1q0md4wbal5cmcl6hg3c1wkdz5mi1w5qddgi472vv1z83"; depends=[ape car cluster randomcoloR vegan]; }; - aRchi = derive2 { name="aRchi"; version="1.0.5"; sha256="1sn321d2qh7vvwfbr62lg3c5ggg8df0w0q6mwcg5pr3jqhiif076"; depends=[circular data_table DiceKriging dplyr FNN gtools lidR pkgcond plyr progress rgl stringr]; }; + aRchi = derive2 { name="aRchi"; version="2.1.0"; sha256="0hip0fj99aqmlhs8sjm325xslm40fdirk1i43gvbzv7yj4hvqwdx"; depends=[circular data_table DiceKriging dplyr fastcluster FNN gtools lidR pkgcond plyr pracma progress Rfast rgl stringr svMisc VoxR]; }; aRpsDCA = derive2 { name="aRpsDCA"; version="1.1.1"; sha256="0ghg43rd6bnv4jp8pkpd1ixp5l6kq5pr0mxq61q24s24g0m3s64p"; depends=[]; }; - aRtsy = derive2 { name="aRtsy"; version="0.1.6"; sha256="1fwiqr0ixq8k0mgv0swpbmdngrvlvl20963yn2h8sdxwck7n32sk"; depends=[ambient e1071 ggplot2 kknn randomForest Rcpp RcppArmadillo]; }; + aRtsy = derive2 { name="aRtsy"; version="0.1.8"; sha256="065dx32chhgrhdc3ckixwssdpfs6js539rd12mk82056cidh44bf"; depends=[ambient e1071 ggplot2 kknn randomForest Rcpp RcppArmadillo]; }; aRxiv = derive2 { name="aRxiv"; version="0.6"; sha256="1smv7aiqdk60aq9lna33a7hdykjdgfakaycpqkjj711b3pixcd34"; depends=[httr XML]; }; aSPC = derive2 { name="aSPC"; version="0.1.2"; sha256="1q301rw7dax5v58srg4jlcam1qq2igkaj7kg8wlnlml0hsck4c4a"; depends=[energy mvtnorm]; }; aSPU = derive2 { name="aSPU"; version="1.50"; sha256="0rh21dj5913nxhdndqfhxvm6mvwnacraf7l3bac09awm7cfhk511"; depends=[fields gee MASS matrixStats mvtnorm]; }; @@ -5773,7 +5609,7 @@ in with self; { abc = derive2 { name="abc"; version="2.1"; sha256="0ngzaaz2y2s03fhngvwipmy4kq38xrmyddaz6a6l858rxvadrlhb"; depends=[abc_data locfit MASS nnet quantreg]; }; abc_data = derive2 { name="abc.data"; version="1.0"; sha256="1bv1n68ah714ws58cf285n2s2v5vn7382lfjca4jxph57lyg8hmj"; depends=[]; }; abcADM = derive2 { name="abcADM"; version="1.0"; sha256="0vcabnnnwc0psv9v3rda5aap9s8cq1pjh02zva3ki64hlavf2a10"; depends=[BH Rcpp]; }; - abclass = derive2 { name="abclass"; version="0.1.0"; sha256="1942a0sws4y6hj9z95rn5vdy9qw9xcdqhdb2pjpk7r6g0vckap07"; depends=[Rcpp RcppArmadillo]; }; + abclass = derive2 { name="abclass"; version="0.2.0"; sha256="1vmn50fp5w9sxkm8hd3lm888zjgxmxbmg63rkzpyd2mpbzm69zpv"; depends=[Rcpp RcppArmadillo]; }; abcrf = derive2 { name="abcrf"; version="1.8.1"; sha256="1ghbd24yhqy3xhdxas6ccn84nkavqpgldx5ck8kijknc7qjm8k27"; depends=[doParallel foreach MASS matrixStats ranger Rcpp RcppArmadillo readr stringr]; }; abcrlda = derive2 { name="abcrlda"; version="1.0.3"; sha256="04pcdnk2szfpc2ylcw5ds7y895ivy03bycal03kxw7cwylzxasks"; depends=[]; }; abctools = derive2 { name="abctools"; version="1.1.3"; sha256="07s9dg10i8lsxl73b4n2hynca2fjgb0ykb0dz8c3zv6cgw3cyx97"; depends=[abc abind Hmisc plyr]; }; @@ -5785,7 +5621,7 @@ in with self; { abglasso = derive2 { name="abglasso"; version="0.1.1"; sha256="0h8p912l0202wyr5vjsbzw5mr70m56ab39wv833g6c4c3187479y"; depends=[MASS pracma statmod]; }; abind = derive2 { name="abind"; version="1.4-5"; sha256="0b1zd8jbnl6l292cr9rb50m09fy3ylxvzkpgi5lfb1nbzddcwfis"; depends=[]; }; abjutils = derive2 { name="abjutils"; version="0.3.2"; sha256="0lmf4va8qnzwg698i2h4fcwvd6dhsgdkqsfh41aa3wg1flimhsr7"; depends=[dplyr magrittr purrr rlang rstudioapi stringi stringr tidyr]; }; - abn = derive2 { name="abn"; version="2.7-0"; sha256="13i2f4lw1rzj89bp31sn03prq1bqj7bsxwdr8z2ql02yqks9phg0"; depends=[doParallel foreach graph lme4 nnet Rcpp RcppArmadillo Rgraphviz rjags]; }; + abn = derive2 { name="abn"; version="2.7-1"; sha256="1w3jns96m8b9scvaa4hcla3i88a0cfh9qis2l04yixvda5q91gpr"; depends=[doParallel foreach graph lme4 nnet Rcpp RcppArmadillo Rgraphviz rjags]; }; abnormality = derive2 { name="abnormality"; version="0.1.0"; sha256="1fzfskl9akl06nliy8hkv2a0pznpj8pwcypg3gj5r2nzvr3kan9v"; depends=[MASS Matrix]; }; abodOutlier = derive2 { name="abodOutlier"; version="0.1"; sha256="1pvhgxmh23br84r0fbmv7g53z2427birdja96a67vqgz18r3fdvj"; depends=[cluster]; }; abstr = derive2 { name="abstr"; version="0.4.1"; sha256="0ykds1l7bi0h06fjp0d6xshl8ar05n7ccmjbl7hz02l2v7ncfa6v"; depends=[jsonlite lwgeom magrittr od sf tibble tidyr]; }; @@ -5799,7 +5635,9 @@ in with self; { accelerometry = derive2 { name="accelerometry"; version="3.1.2"; sha256="13xzrwhr4i1nj9c8vrmfdg2rmrc8n446iihcyxmy99sm99hpzyip"; depends=[dvmisc Rcpp]; }; accelmissing = derive2 { name="accelmissing"; version="1.4"; sha256="1nql9inx6azdzi3z4sfm2vdml2mms6krl8wzlf1dn1c97ahn57fy"; depends=[mice pscl]; }; accept = derive2 { name="accept"; version="0.9.0"; sha256="13kx8fbnbpasjklgbq2rf4n73j2s8rvy5v77ywqhfzln24937qgh"; depends=[dplyr reldist]; }; + accessrmd = derive2 { name="accessrmd"; version="1.0.0"; sha256="1jdbbsi8nzvr8hnrpw5sr8zf55irnwwrnkwx4vd0zx84bxvw3bqy"; depends=[ggplot2 htmltools knitr RCurl rlist stringr]; }; accrual = derive2 { name="accrual"; version="1.3"; sha256="11clm9s5c5518nmp6hd6pjnp0s28y92b2i2x0xgj4j5g816p4j3z"; depends=[fgui SMPracticals tcltk2]; }; + accrualPlot = derive2 { name="accrualPlot"; version="1.0.1"; sha256="10swxpj10rzgr6xggp56fflszn7vx74bz02vqw5f2miqdrhwp4hq"; depends=[dplyr ggplot2 lubridate magrittr purrr rlang]; }; accucor = derive2 { name="accucor"; version="0.3.0"; sha256="1byhfh9lskgpi8sx6kb7prh88a2jglrjpq206rmh98hqd3r23n5j"; depends=[CHNOSZ dplyr nnls readr readxl rlang stringr tibble writexl]; }; ace2fastq = derive2 { name="ace2fastq"; version="0.6.0"; sha256="09kk3yyqnr2xp820g0p3aai9a21figigjr9lxkr3zjq2d8gzwfic"; depends=[stringr]; }; aceEditor = derive2 { name="aceEditor"; version="1.0.1"; sha256="1qdxs20si1smjn24dlgq46x6qwjdwsa0f5lzh1vrbgv4kk9j1rfb"; depends=[htmltools htmlwidgets reactR rstudioapi]; }; @@ -5808,7 +5646,6 @@ in with self; { acfMPeriod = derive2 { name="acfMPeriod"; version="1.0.0"; sha256="1yww8isfrbs2v9s94hx7p2imyszcgadwafdgpj438n2ik0q6p9d5"; depends=[MASS]; }; acid = derive2 { name="acid"; version="1.1"; sha256="030i0y8s283ivbsmjccpbv9v7mgbcg2jk9df7vgcbbns74swf9hd"; depends=[gamlss gamlss_dist Hmisc]; }; acled_api = derive2 { name="acled.api"; version="1.1.5"; sha256="0x0hp5cqpxal1360xjpyciwsl8hsywp2glwcgqqgrckl3y89hh7x"; depends=[httr jsonlite]; }; - acmeR = derive2 { name="acmeR"; version="1.1.0"; sha256="000b2hqlhj93958nddw0fqb15ahigs08najv2miivym046x04mf7"; depends=[foreign]; }; acnr = derive2 { name="acnr"; version="1.0.0"; sha256="087hq4i7jp67ba2finzsqjfnqbiprl33na6ryjv9zqzsdawj9cym"; depends=[]; }; acopula = derive2 { name="acopula"; version="0.9.3"; sha256="0vvbbw8pfs9jwfz5c57lw48pr0qj661r0ys007q6zf9jmlrhx1ln"; depends=[]; }; acp = derive2 { name="acp"; version="2.1"; sha256="0lcwbjcyyr32m6qjmjqh25qjwrbyqj1n092xhgbhxzd8fslppnmn"; depends=[quantmod tseries]; }; @@ -5822,7 +5659,7 @@ in with self; { activPAL = derive2 { name="activPAL"; version="0.1.3"; sha256="1h6hp5z89ji73gdzxy1dgbfwjysiy5lvcqh90xagpb7sa7ahs3na"; depends=[devtools dplyr ggplot2 lubridate magrittr tidyr]; }; activatr = derive2 { name="activatr"; version="0.1.0"; sha256="0c0sn0b5w1k7kgrx8b6vanamlxsr9nqvkwhm0d8imghq8wl90h43"; depends=[dplyr geosphere ggmap glue httr lubridate magrittr rlang tibble timetk xml2]; }; activegp = derive2 { name="activegp"; version="1.0.6"; sha256="0aml1lib9rxagkiw1gl9ps8pahllf52zkps9x5h0mga0lf7aahpz"; depends=[hetGP lhs numDeriv Rcpp RcppArmadillo]; }; - activity = derive2 { name="activity"; version="1.3.1"; sha256="1wn2a0hx7wfr2jyj1b772w5fgl6bcqkkw8cybais2s1wyjx8kjr5"; depends=[circular insol pbapply]; }; + activity = derive2 { name="activity"; version="1.3.2"; sha256="11n6wmqz7p3428rr615f92m61a5gb908xpn4l8q484h61bwg38c3"; depends=[insol pbapply]; }; activityCounts = derive2 { name="activityCounts"; version="0.1.2"; sha256="0zgxr2sk3a8kmygfxx1p5hnrfwdkxx7php6jlrhm8wv6052ck8jz"; depends=[lubridate magrittr seewave signal tibble]; }; activityGCMM = derive2 { name="activityGCMM"; version="1.1.1"; sha256="0r11z61h8fs5dcm3yfr2njbrbh4pv7xlbqx5zngmrknhv407498z"; depends=[circular mclust overlap runjags]; }; actogrammr = derive2 { name="actogrammr"; version="0.2.3"; sha256="1jzvarmd41yqlrkagzlc8m19n5mn0w0b36fy50lyvgrfsafjfbqa"; depends=[dplyr ggplot2 lubridate readr tidyr]; }; @@ -5857,7 +5694,7 @@ in with self; { additiveDEA = derive2 { name="additiveDEA"; version="1.1"; sha256="15nxpdybsda6yhjk23bpafr8v1zdx8332pcxf26k795q3ypjpiy2"; depends=[Benchmarking lpSolveAPI]; }; additivityTests = derive2 { name="additivityTests"; version="1.1-4"; sha256="048ds90wqjdjy1nyhna3m06asdklbh8sx1n556kss2j1r1pma1sw"; depends=[]; }; addreg = derive2 { name="addreg"; version="3.0"; sha256="13bwmgxylwi02g60j1rr51cr5jvvkl2nvf2lnnhnq46fhvs2ma7s"; depends=[combinat glm2 turboEM]; }; - ade4 = derive2 { name="ade4"; version="1.7-18"; sha256="09f5kh2mwygqpnvf53k0r54k0cvaafxm9x4nm819gwv05k2g9dpc"; depends=[MASS pixmap sp]; }; + ade4 = derive2 { name="ade4"; version="1.7-19"; sha256="1vv5y6badksnpjb3bcphhjdzzh6i2grmwnsalcf2cfpr3y412lf8"; depends=[MASS pixmap sp]; }; ade4TkGUI = derive2 { name="ade4TkGUI"; version="0.3-1"; sha256="1y0f62n8iv002ayd1nyl3bmszw558niwnfzjpvk0a7cbvfdyvwcg"; depends=[ade4 adegraphics lattice]; }; adea = derive2 { name="adea"; version="1.3.1"; sha256="0jvxgqwfga4gsn5jcdklfq2qci3xyvmkdfjappjwf72swb2rkv0n"; depends=[Benchmarking combinat knitr lpSolveAPI rmarkdown]; }; adegenet = derive2 { name="adegenet"; version="2.1.5"; sha256="1wjp31634n6z6wglf4z3ydrhhn5jmpwwckmp3n2b0v5f3p2fivp4"; depends=[ade4 ape boot dplyr ggplot2 igraph MASS reshape2 seqinr shiny vegan]; }; @@ -5873,7 +5710,6 @@ in with self; { adespatial = derive2 { name="adespatial"; version="0.3-16"; sha256="08d830c36738v98rn4hn95y01045v2xzyf43cy7aqckapkhdcywq"; depends=[ade4 adegraphics adephylo lattice MASS shiny sp spdep vegan]; }; adfExplorer = derive2 { name="adfExplorer"; version="0.1.6"; sha256="06sk68580i7jg9lk4jj64ns04y4q6amzsh0k7nxhfdib107yajnp"; depends=[]; }; adheRenceRX = derive2 { name="adheRenceRX"; version="1.0.0"; sha256="19kimj88dmcc8mq3s4l7pph9jz8p57gbjyn0pn5zkrcjdrwncslm"; depends=[anytime dplyr lubridate purrr Rcpp rlang tidyr]; }; - adhoc = derive2 { name="adhoc"; version="1.1"; sha256="0a59fv9glcqh4zzd0887ndrhlcaylja6vay2ifajp8an29gjk1vv"; depends=[ape pegas polynom]; }; adimpro = derive2 { name="adimpro"; version="0.9.3"; sha256="0njw38vcdm02sni193nj10mpv7hiklpamrkjlz5bnhjxx9mvf4cl"; depends=[awsMethods]; }; adiv = derive2 { name="adiv"; version="2.1.1"; sha256="08cvnj62vm2vi73qrv87hxch4fsl5ab8fp5lcm143sp0f9n8daa6"; depends=[ade4 adegraphics adephylo ape cluster FactoMineR lpSolve phylobase phytools rgl]; }; adjROC = derive2 { name="adjROC"; version="0.2.0"; sha256="0ipvp7f7asg8pbzbm3rnn8hp20gs3aqispvagddjw1yd39h0zgrk"; depends=[ggplot2 ROCit]; }; @@ -5884,7 +5720,7 @@ in with self; { adlift = derive2 { name="adlift"; version="1.4-3"; sha256="1lj99vm014fglw57qc00wzxbx4kzb4ky5iisqd756dfg3k41wa55"; depends=[EbayesThresh]; }; admiral = derive2 { name="admiral"; version="0.6.3"; sha256="0b40v2y09ia8fhl70i261dmhl18vcn9dy5crr2hb44dnz3rb533c"; depends=[admiral_test assertthat dplyr hms lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; admiral_test = derive2 { name="admiral.test"; version="0.1.2"; sha256="0p5qv43cbyyxj2i6awkayrfk9rc07h55ck9xpknyd5nf9c08gd1y"; depends=[dplyr magrittr rlang]; }; - admisc = derive2 { name="admisc"; version="0.26"; sha256="19zkwyp8gvq8f74midmwld4azx44sbqxqx9mgs726i6dhnls6821"; depends=[]; }; + admisc = derive2 { name="admisc"; version="0.27"; sha256="07hfrhv3pcldsffnyfzpa1q3x32gxr1386r8fik1nhql2w46mm13"; depends=[]; }; admix = derive2 { name="admix"; version="0.4.0"; sha256="1vfga2l6yay4l8q53siibf1ljr77fmcgbddlag414jmv2awckr0c"; depends=[fdrtool Iso latex2exp MASS orthopolynom pracma Rcpp]; }; admixr = derive2 { name="admixr"; version="0.9.1"; sha256="0wszpzs53cbnha13g2ldpq6z5ndw2v2xgrzadqkjm3hsp6akv4bl"; depends=[dplyr magrittr readr rlang stringr tibble]; }; admmDensestSubmatrix = derive2 { name="admmDensestSubmatrix"; version="0.1.0"; sha256="1a5lfm10aj6wdjibdnmffn75zvy6x69w8nqcx2i23gxg6v0xlqcl"; depends=[Rdpack]; }; @@ -5901,7 +5737,7 @@ in with self; { adwordsR = derive2 { name="adwordsR"; version="0.3.1"; sha256="1w5qg4psm8pj89f09pz7in8zkafaimik1n6hx29y55jpmbxbk2gn"; depends=[RCurl rjson]; }; afc = derive2 { name="afc"; version="1.4.0"; sha256="1iy1wa88kf6zi6x7lbd0jdir653cvzvdraliqpxbac413wwb5gwl"; depends=[]; }; afdx = derive2 { name="afdx"; version="1.1.1"; sha256="1654vxakdd11b5zhwy1vcv127xk5rifan6fs1k6w1qsk74j4drqv"; depends=[dplyr magrittr maxLik tidyr]; }; - afex = derive2 { name="afex"; version="1.1-0"; sha256="0h8zqv82dqll19l3p89a2csvgnx8ayb2bajq7b35a8svhj427zax"; depends=[car lme4 lmerTest pbkrtest reshape2]; }; + afex = derive2 { name="afex"; version="1.1-1"; sha256="09q426s2zmzxx5ilxy0x5mflpb38pl075ss1s8xvpswkn6cia0b6"; depends=[car lme4 lmerTest pbkrtest reshape2]; }; affinity = derive2 { name="affinity"; version="0.2.5"; sha256="0nfh3g8nifv5773pihgzxh62wa837i2dk1kgf15z28cb5xfj2y8h"; depends=[raster reproj]; }; affinitymatrix = derive2 { name="affinitymatrix"; version="0.1.0"; sha256="10i7wzl4xiphj5f466ga7c4ha3mkyqn63x1z0jyx50m0b84sggq1"; depends=[expm ggplot2 ggrepel Hmisc MASS]; }; affluenceIndex = derive2 { name="affluenceIndex"; version="2.1"; sha256="0vcg4gphs0yxdxsgw7kj9r3hvjpfs2z8sjvllvfw9ki3y7jy5jb8"; depends=[spatstat spatstat_geom]; }; @@ -5922,12 +5758,13 @@ in with self; { agrifeature = derive2 { name="agrifeature"; version="1.0.3"; sha256="0zbjmgwajwihgvs1c3swddx09m6954sihnpjdrqlgl5jhh7q2bgs"; depends=[]; }; agriwater = derive2 { name="agriwater"; version="1.0.1"; sha256="1mssd0nxj8ayc3b2qcc7qzx93cnwnlxrnhn3rdknxc8iixkf40l8"; depends=[raster rgdal sp]; }; agrmt = derive2 { name="agrmt"; version="1.42.8"; sha256="1czxcyqrmcpjh4h77p9c6gb63aj0mi1b8cdxp3q6r0k7dy8db7ad"; depends=[]; }; + agroclim = derive2 { name="agroclim"; version="0.2.0"; sha256="0f2v6lncgv5060ryyf3k34j9qdqdx9m3kylxwzai2lf983shdfbz"; depends=[abind cowplot easyNCDF ggforce ggplot2 ggpubr gtable multiApply ncdf4 plyr raster reshape sp zoo]; }; agrostab = derive2 { name="agrostab"; version="0.1.0"; sha256="0mcskv3144j594wqljzn5pwbhkxh6sb76b1c2wabzjvi61zrapiv"; depends=[dplyr ggplot2 rlang]; }; agsemisc = derive2 { name="agsemisc"; version="1.3-1"; sha256="1905q35jgjhghlawql43yh296kbpysp927x3hj750yshz5zayzyr"; depends=[lattice MASS]; }; agtboost = derive2 { name="agtboost"; version="0.9.3"; sha256="1z2ys4cn859vas3q1if50k46cryn7wwy1pjqbc8n9dhdn5zxn3sk"; depends=[Rcpp RcppEigen]; }; agvgd = derive2 { name="agvgd"; version="0.1.1"; sha256="015izbi0f208ff0b6n2h4vjkdvi7wjzx8qkcyh7c556ikhijaxk5"; depends=[crayon dplyr grantham magrittr purrr rlang seqinr stringr tibble tidyr vctrs]; }; ahMLE = derive2 { name="ahMLE"; version="1.20.1"; sha256="1phfzl0kynrq1if12h736jdxrfqc3i4kd32hp7sy2k2z7hkj1dkm"; depends=[invGauss Matrix Rcpp RcppArmadillo survival]; }; - ahaz = derive2 { name="ahaz"; version="1.14"; sha256="1z7w5rxd5cya7kxhgxqvn72k87y33ginxra9g7j9wrfs5jgx6kvx"; depends=[Matrix survival]; }; + ahaz = derive2 { name="ahaz"; version="1.15"; sha256="0k6i8s2miic2y1dgwjlpkhmaw6k3phn772p0600gcnjqxbqajznh"; depends=[Matrix survival]; }; ahnr = derive2 { name="ahnr"; version="0.3.1"; sha256="1g8m3q108ricfyn4fjjaihpr93xz7fm2sfzg3i0fz1n1i703jwm8"; depends=[ggplot2 magrittr matrixcalc pdist pracma purrr visNetwork]; }; ahpsurvey = derive2 { name="ahpsurvey"; version="0.4.1"; sha256="1r7x4c318nzbx0ppm9272kfpz2bln1cafkv9irnj85nsdcravr33"; depends=[dplyr knitr magrittr randomNames Rdpack tidyr]; }; ahptopsis2n = derive2 { name="ahptopsis2n"; version="0.2.0"; sha256="0pjxchrjik0d3ydr1hjqrba1p1y9sirwjwzjkmxh2fk803c0b9la"; depends=[]; }; @@ -5951,11 +5788,10 @@ in with self; { ajv = derive2 { name="ajv"; version="1.0.0"; sha256="1qd5ncb7rdnnvqfknsvq9nrpxrh0zv3jyh4b91dcvfvhp262vfrm"; depends=[RJSONIO V8 yaml]; }; akc = derive2 { name="akc"; version="0.9.7"; sha256="0wyi7g1s0j366gj33v3rhlv3hdj5rakb6lmhp77l9zn0bbgmq38m"; depends=[data_table dplyr ggforce ggplot2 ggraph ggwordcloud igraph magrittr rlang stringr textstem tibble tidyfst tidygraph tidytext]; }; akiFlagger = derive2 { name="akiFlagger"; version="0.3.0"; sha256="08z5jvigzvl3af17dd8l6zil0s694i22x0a7xvb3n4fvg6fargz4"; depends=[data_table dplyr shiny zoo]; }; - akima = derive2 { name="akima"; version="0.6-2.3"; sha256="0hvaa2n1r82fd60ksx4n4ia02fbm67fqdijfy2b2xywq8861i6rv"; depends=[sp]; }; + akima = derive2 { name="akima"; version="0.6-3.4"; sha256="0gmdh5kvq455k82pvdsqbkk69bi7g0960jq5rcl3cbhxm297arcm"; depends=[sp]; }; akmbiclust = derive2 { name="akmbiclust"; version="0.1.0"; sha256="19dj12vlry6f3agzrnshx2c4rpa2h7dlx2138r49jjy9sm48pyfw"; depends=[]; }; - akmeans = derive2 { name="akmeans"; version="1.1"; sha256="1nqbxbx583n0h2zmpy002rlmr6j86j6bg76xj5c69brrh59dpyw1"; depends=[]; }; akmedoids = derive2 { name="akmedoids"; version="1.3.0"; sha256="19d9fh1cygn04riwc7y7lzdncyxki9rzikf9f5m96vp0y687z2ka"; depends=[clusterCrit dplyr ggplot2 Hmisc kml signal]; }; - alabama = derive2 { name="alabama"; version="2015.3-1"; sha256="0mlgk929gdismikwx4k2ndqq57nnqj7mlgvd3479b214hksgq036"; depends=[numDeriv]; }; + alabama = derive2 { name="alabama"; version="2022.4-1"; sha256="0v6kl6ndm8wvp9xzya3x4gj5kh03qgx13x5vyzn410wsndcjiim8"; depends=[numDeriv]; }; alakazam = derive2 { name="alakazam"; version="1.2.0"; sha256="0lqvfamx9lqcg6ig70zzxan2zchab68g6qxa734d6dsdgyfkiwnm"; depends=[airr ape Biostrings dplyr GenomicAlignments ggplot2 igraph IRanges Matrix progress Rcpp readr rlang scales seqinr stringi tibble tidyr]; }; albatross = derive2 { name="albatross"; version="0.3-4"; sha256="0fnywnydzn7mmdnlb413px08k09y5ac2ib3p8jic77i09g1v554m"; depends=[CMLS lattice Matrix multiway pracma]; }; albopictus = derive2 { name="albopictus"; version="0.5"; sha256="0kw1agm9jqi9wl5zbx8bryngy751g3sih36rgbrx0m2170cy42d9"; depends=[]; }; @@ -5967,7 +5803,6 @@ in with self; { algo = derive2 { name="algo"; version="0.1.0"; sha256="1g18p8jyj9crkqm16y2im3r9xzqwa36javv4vi1wvsqkg31d81si"; depends=[glue htmltools jsonlite]; }; algorithmia = derive2 { name="algorithmia"; version="0.3.0"; sha256="1ccmcsyxncyv8k0fjvr5y44amygqi7qx2dy6rsy3a5pw281hllr4"; depends=[base64enc httr rjson]; }; aliases2entrez = derive2 { name="aliases2entrez"; version="0.1.2"; sha256="11myzwvmagnj35qrrxr35hklzv76c0c4h2zl64y3lzzn5rfii0n6"; depends=[AnnotationDbi doParallel foreach limma org_Hs_eg_db RCurl readr]; }; - alignfigR = derive2 { name="alignfigR"; version="0.1.1"; sha256="0jsj0h7zpzj6ynfydl8qbggm03xx8db769rli7rcx9909xdxabk6"; depends=[ggplot2]; }; allcontributors = derive2 { name="allcontributors"; version="0.0.2"; sha256="0b9qiwp6z33fgci7np4qhsb39rzmarajsj3pa98vkmdn71bw1bxf"; depends=[cli clipr ghql git2r httr jsonlite magrittr]; }; alleHap = derive2 { name="alleHap"; version="0.9.9"; sha256="1fqrw645s3f5363p7jl3dzy8xphxdr1v6wdsjmqcqwpgvjqfr2zz"; depends=[abind]; }; allelematch = derive2 { name="allelematch"; version="2.5.1"; sha256="00117cj01psax4rjvy2nja5r2ss9l8zzjicczh46kp401i1ghmwc"; depends=[dynamicTreeCut]; }; @@ -6001,14 +5836,13 @@ in with self; { amerika = derive2 { name="amerika"; version="0.1.0"; sha256="1c0bi0wrc89d0zv0wzmdvka66mcikgi1w4gn1i22mvg5bivhzaqx"; depends=[]; }; aml = derive2 { name="aml"; version="0.1-1"; sha256="09xxlxp784wlb561apns3j8f2h9pfk497cy5pk8wr4hhqqv4d3al"; depends=[lars]; }; ammiBayes = derive2 { name="ammiBayes"; version="1.0-1"; sha256="1m60pg84nhrlhj3kgja766xms2i9dkx0r5vggskfx82mynnlhj9y"; depends=[bayesplot coda distfree_cr Hmisc lattice latticeExtra movMF msm spam]; }; - ammistability = derive2 { name="ammistability"; version="0.1.2"; sha256="0ak20y5iv1cg5y06srdlfk5qp5c463ky41l350shnqpq550azy11"; depends=[agricolae ggcorrplot ggplot2 mathjaxr Rdpack reshape2]; }; amp = derive2 { name="amp"; version="1.0.0"; sha256="11132s3bdjcldvpws7yc1w4nifvq0iaavdda2zj0wwmi4rw5xx5c"; depends=[dplyr ggplot2 glmnet MASS rlang SuperLearner tidyr]; }; ampd = derive2 { name="ampd"; version="0.2"; sha256="0bi8qngd37n60ym516yjcahxc536vdwm60rq5ld32170hww69j7c"; depends=[]; }; ampir = derive2 { name="ampir"; version="1.1.0"; sha256="0nnsxrnq3m1frrjp3i8bhm67x6xnl0scyb67wxgm5x7b187svhfj"; depends=[caret kernlab Peptides Rcpp]; }; amt = derive2 { name="amt"; version="0.1.7"; sha256="04sjvb4zvalv22q90n50rdkkj002vr5shhpgxacaac7hy0pgpcyc"; depends=[checkmate circular ctmm dplyr fitdistrplus lubridate magrittr purrr raster Rcpp Rdpack rgeos rlang sf sp survival tibble tidyr]; }; anMC = derive2 { name="anMC"; version="0.2.2"; sha256="0ab215nrqn535g9ayqzvgdckhwcrij1mc1296pvlj3grn3f8rhws"; depends=[mvtnorm Rcpp RcppArmadillo]; }; anacor = derive2 { name="anacor"; version="1.1-3"; sha256="0mj8g9p4fla0ax9jvcq7kii4lrhj8g872p11nys06anva22qjp51"; depends=[car colorspace fda]; }; - analogsea = derive2 { name="analogsea"; version="1.0.3"; sha256="1mf9baniria2vq5k5djm8jfj3lyr2p9q9idcy0ifcrmzyrmgwwi3"; depends=[httr jsonlite magrittr yaml]; }; + analogsea = derive2 { name="analogsea"; version="1.0.6"; sha256="1bcykcsciv4s7071iw3a9sxpd3jslv1sg93mxzyhxy4y2pikg7q0"; depends=[httr jsonlite magrittr yaml]; }; analogue = derive2 { name="analogue"; version="0.17-6"; sha256="0c5h8nnbflydv35ja1pfhyx7ifwlriwgcnrmxj5il5lvcr70y1vi"; depends=[brglm lattice MASS mgcv princurve vegan]; }; analogueExtra = derive2 { name="analogueExtra"; version="0.1-1"; sha256="1s3qs10hf6hkna0bicid1mc8x8r449bl93xpgyw6lnsjgh2yx62c"; depends=[analogue rgl vegan3d]; }; analysisPipelines = derive2 { name="analysisPipelines"; version="1.0.2"; sha256="1rxam52wrbcjrvixb35b9ha37i8a0fczby49vmgzpnrbvkc50ldx"; depends=[dplyr futile_logger ggplot2 magrittr pipeR proto purrr RCurl rlang]; }; @@ -6072,7 +5906,7 @@ in with self; { aphylo = derive2 { name="aphylo"; version="0.2-1"; sha256="0kvxz5r1z63610k127ji7dangrq7pd0zfgf5yqsvn0v7j4c9c5v5"; depends=[ape coda fmcmc MASS Matrix Rcpp xml2]; }; apisensr = derive2 { name="apisensr"; version="0.3.0"; sha256="1mis266s4m0hp34m7b7p008dvw7780r8rypgbpk7h5hgd1w5d7m0"; depends=[config episensr ggplot2 ggraph glue golem htmltools igraph rhandsontable rmarkdown shiny shinyjs shinymaterial]; }; aplore3 = derive2 { name="aplore3"; version="0.9"; sha256="0af6klscsxvh4amp519b6r41bzysf61p040fj4l5706bbya1arhw"; depends=[]; }; - aplot = derive2 { name="aplot"; version="0.1.3"; sha256="10cqa35bh4lhpnybaalp3d69k392b25ba16dgbngqz0vikzp4czk"; depends=[ggfun ggplot2 ggplotify magrittr patchwork yulab_utils]; }; + aplot = derive2 { name="aplot"; version="0.1.4"; sha256="1b4jjj05a602dgn6yr1bsmbzlzkj6wf6af3k3w63g3mkqv0xzsfd"; depends=[ggfun ggplot2 ggplotify magrittr patchwork]; }; aplpack = derive2 { name="aplpack"; version="1.3.5"; sha256="0kv6sbw8832hlfc6164bfvg1ga4hkfw4c7i11dlz7mbhrw2vqm24"; depends=[]; }; apng = derive2 { name="apng"; version="1.1"; sha256="0g1rs8wdcbqhyjis2r1a4d96jf0486ncnap97yjv08nk574d42wp"; depends=[bitops]; }; apollo = derive2 { name="apollo"; version="0.2.7"; sha256="05c3wkvpg3n44k9lbrsd0i4l1q554mqfcx7cqph60ngqfbrkvlcg"; depends=[coda Deriv matrixStats maxLik mnormt mvtnorm numDeriv randtoolbox Rcpp RcppArmadillo RcppEigen RSGHB stringr tibble]; }; @@ -6087,7 +5921,7 @@ in with self; { apsimx = derive2 { name="apsimx"; version="2.3.1"; sha256="1d1ipzf9ahdb3540zjcyzj4dwx5v8b73av790ahhbmc128vdmspj"; depends=[DBI jsonlite knitr RSQLite xml2]; }; apt = derive2 { name="apt"; version="3.0"; sha256="14njvpf6q34nffm3r9gqcszlabzbydsxqj0ln9nk4mv59izp8sqm"; depends=[car erer urca]; }; apyramid = derive2 { name="apyramid"; version="0.1.2"; sha256="0ws6dfd6v3p9rhpmf06786yl2gaw1h2n1d76a054iap8bvgyahzw"; depends=[dplyr forcats ggplot2 glue rlang scales tidyselect]; }; - aqp = derive2 { name="aqp"; version="1.41"; sha256="1md0ah0i8ifcmqc7q38mgbdhpnxvjmiax9ic8w0bqayw6lh9vyi6"; depends=[cluster data_table lattice plyr sp stringr]; }; + aqp = derive2 { name="aqp"; version="1.42"; sha256="06mgrxq2kq5qkg5sqxvvllk1iwd28p2j82m9fr4cjv2icklll3fl"; depends=[cluster data_table lattice plyr sp stringr]; }; aquodom = derive2 { name="aquodom"; version="0.1.1"; sha256="11w3qf1fwa5gqbiwfq23hrw8k009xbn8rwdb5fgckykyc49lhqbk"; depends=[cachem dplyr glue httr lubridate magrittr memoise openxlsx readr rlang stringr tibble]; }; ar_matrix = derive2 { name="ar.matrix"; version="0.1.0"; sha256="1d531hkl50szfa1q0zbp8dp1a9jli63kwvxjgc9n0ar279y47qdz"; depends=[MASS Matrix sp sparseMVN]; }; arabic2kansuji = derive2 { name="arabic2kansuji"; version="0.1.1"; sha256="0fb8qn9a7xyk2civs1s3cx61hxmkrj6pkwnfq7pbjdm2dh6xjfky"; depends=[purrr stringr]; }; @@ -6099,7 +5933,7 @@ in with self; { archetyper = derive2 { name="archetyper"; version="0.1.0"; sha256="1d4vz7kj7n5j81fwfxvr47if8c7fdycci6n33wf8paac0v2paqli"; depends=[bannerCommenter config feather here knitr log4r ps readr rmarkdown skimr snakecase stringr testthat tidyverse]; }; archetypes = derive2 { name="archetypes"; version="2.2-0.1"; sha256="0ibxsr173ib77gjhid91m85s8gjii4mi2w3d52q5301igv20p7r0"; depends=[modeltools nnls]; }; archiDART = derive2 { name="archiDART"; version="3.4"; sha256="1wvjlg2rwy39czf3qqh9igk9rmk9i7pxa9yl5x9yqmsagwd1av3n"; depends=[geometry gtools sp XML]; }; - archive = derive2 { name="archive"; version="1.1.4"; sha256="1bhw3k1fwvvvacgsz1qgzc513lsz3y62cnvnvgabl6aqpn6fs29n"; depends=[cli cpp11 glue rlang tibble]; }; + archive = derive2 { name="archive"; version="1.1.5"; sha256="0zq61bvma82fxvczy3bhfy3x8k5s36avmblvfl1vsa2f0rp63nmk"; depends=[cli cpp11 glue rlang tibble]; }; archiveRetriever = derive2 { name="archiveRetriever"; version="0.1.1"; sha256="0vm2nncf98vhdv5yq8k66z9bffpxq9hck11r09dmcls997h2p27x"; depends=[anytime dplyr ggplot2 gridExtra httr jsonlite lubridate rvest stringr tibble tidyr xml2]; }; archivist = derive2 { name="archivist"; version="2.3.6"; sha256="0q1qysack30xzxdbvvi56rk7r85hsj4ghls9r70ki7bl3rqwr4c9"; depends=[DBI digest flock httr lubridate magrittr RCurl RSQLite]; }; archivist_github = derive2 { name="archivist.github"; version="0.2.6"; sha256="092fzi505vx9xbk41m86d0isxna42iflp7q2kjiqa6z1ccvim2yx"; depends=[archivist digest git2r httr jsonlite]; }; @@ -6116,8 +5950,7 @@ in with self; { argon2 = derive2 { name="argon2"; version="0.4-0"; sha256="09hzl0wz0lw2v7g64rdv0lij2hq36zl37a6rmxwvinmjdzijcsyw"; depends=[]; }; argonDash = derive2 { name="argonDash"; version="0.2.0"; sha256="1wykr7y5375g1nb18ynybccxmd948xrr0gdwxxqsfjf782vlgd2d"; depends=[argonR htmltools shiny]; }; argonR = derive2 { name="argonR"; version="0.2.0"; sha256="15hlvansqnky9bnq4r7xza3hb1hzylmhz8117wxz9lxa1wiky2is"; depends=[htmltools rstudioapi]; }; - argosfilter = derive2 { name="argosfilter"; version="0.63"; sha256="0rrc2f28hla0azw90a5gk3zj72vxhm1b6yy8ani7r78yyfhgm9ig"; depends=[]; }; - argparse = derive2 { name="argparse"; version="2.1.3"; sha256="0vm6nrzl6rsq2qw3km3i4s92kq9phs3cbxzv3i8hlyld9ajk3nmf"; depends=[findpython jsonlite R6]; }; + argparse = derive2 { name="argparse"; version="2.1.5"; sha256="13b5halfxc7nr57vkz3qmkkcpw1hr4xdk1mjh2cq8cvpnjz15qc3"; depends=[findpython jsonlite R6]; }; argparser = derive2 { name="argparser"; version="0.7.1"; sha256="0xcl0ivsbc4iw8s7027q4cx68j6s5lihbby0xa9pmlv4wjmcvdr6"; depends=[]; }; ari = derive2 { name="ari"; version="0.3.5"; sha256="03w99c918jp23d0kl26vx4m7xjicpgwl5rhn9d0fsm4kvv7j87li"; depends=[hms progress purrr rmarkdown rvest text2speech tuneR webshot xml2]; }; ariExtra = derive2 { name="ariExtra"; version="0.3.1"; sha256="1j8x2m9799i5kxrvsf2cjrffb5p6r4zjrr0khsy4i22xn7kyl8nf"; depends=[ari docxtractr httr jsonlite magrittr mime pdftools rmarkdown rvest text2speech tuneR xml2 yaml]; }; @@ -6136,19 +5969,20 @@ in with self; { arrApply = derive2 { name="arrApply"; version="2.1"; sha256="0qy7iwi580rrf3sycsbv6qgxsqcdy9pdbnkdrx81j68qni9iw737"; depends=[Rcpp RcppArmadillo]; }; arrangements = derive2 { name="arrangements"; version="1.1.9"; sha256="0nrlyxgn6667l2rb1q5rvps1anld9aq88qqr3ch2i6zchnqxrdg9"; depends=[gmp R6]; }; arrayhelpers = derive2 { name="arrayhelpers"; version="1.1-0"; sha256="02rl530qxi1idiqpmzg5wr9vl5c7phizhpj64k5pn8xq9zfxbpaz"; depends=[svUnit]; }; - arrow = derive2 { name="arrow"; version="7.0.0"; sha256="1s9h2aw6iig45nz2rfk13qbp0qydx6cc4r6qs58f9cm9vgwsg76l"; depends=[assertthat bit64 cpp11 purrr R6 rlang tidyselect vctrs]; }; + arrow = derive2 { name="arrow"; version="8.0.0"; sha256="1b85vc5ld7nibqgsdkl5kbzc0rm5jh5lqfdrssvrrcxpd26a16kc"; depends=[assertthat bit64 cpp11 purrr R6 rlang tidyselect vctrs]; }; ars = derive2 { name="ars"; version="0.6"; sha256="0zs1rk3i7pc9wcvxrvjcls194mfbvmkz7cb6pwd1cm3fzjwsyxsp"; depends=[]; }; arse = derive2 { name="arse"; version="1.0.0"; sha256="0ssaalc058m09gfcr1n0s729rx2plia3zkhlynj67drclyvhyb0i"; depends=[dplyr pracma]; }; arsenal = derive2 { name="arsenal"; version="3.6.3"; sha256="0qvs3ld28djnjnggdhqjwq8sbv8zz322qahlvf7dnx35yqf6xkms"; depends=[knitr]; }; artfima = derive2 { name="artfima"; version="1.5"; sha256="1nqsq9fsqk9kag9n7i2r9yvf578nkdfrkkv7qy8650prka0jca2p"; depends=[gsl ltsa]; }; + arthistory = derive2 { name="arthistory"; version="0.1.0"; sha256="01jw0r3pmwwrs5cb31pjyf5cygnfqzyim2dw45lqd0yywkmc5y3h"; depends=[]; }; arules = derive2 { name="arules"; version="1.7-3"; sha256="05g6ik4z87g83nlicmb380331f84sqchvv1vch49zb7rq6v8gw6r"; depends=[generics Matrix]; }; arulesCBA = derive2 { name="arulesCBA"; version="1.2.1"; sha256="1lsy1h37rb3jinh26d668z1v04rh5m1gkfhl3wfkg546hbpq4644"; depends=[arules discretization glmnet Matrix]; }; arulesNBMiner = derive2 { name="arulesNBMiner"; version="0.1-8"; sha256="0kqvi7dzq3mrn6cq22gwxh4p54mgfn9s1sd2cfnbw1f9zp078lsn"; depends=[arules rJava]; }; arulesSequences = derive2 { name="arulesSequences"; version="0.2-25"; sha256="0vd5fgi1b45kgfm5yi9ygaxm0sb8qarz5lsknwh5gla3h0k7l66b"; depends=[arules]; }; arulesViz = derive2 { name="arulesViz"; version="1.5-1"; sha256="06mqdqg5amcrb75lf77wilb9v8c7f50b54p0pk76q0jvirycqrzc"; depends=[arules dplyr DT ggplot2 ggraph igraph plotly scatterplot3d seriation tibble tidyr vcd visNetwork]; }; - asVPC = derive2 { name="asVPC"; version="1.0.2"; sha256="07nfwr0lsfpwgfdgzcdn1svw8dnjfni5ga9q77yjd1bj0wf76ci2"; depends=[ggplot2 plyr]; }; asaur = derive2 { name="asaur"; version="0.50"; sha256="0c1rgic76w3i2xhna7i52lyc0p01s5b1mxyn55gqw6i19v9mq0b3"; depends=[]; }; asbio = derive2 { name="asbio"; version="1.7"; sha256="0kchcpjv4hk66svr52x5d95gqrs5m64np65hjdlqclhjj7h3sjr1"; depends=[combinat deSolve gWidgets2 gWidgets2tcltk lattice multcompView mvtnorm pixmap plotrix scatterplot3d]; }; + ascentTraining = derive2 { name="ascentTraining"; version="1.0.0"; sha256="1dwmr33jc2fp9x51kzlqa4vib7xmzvz9a7qlfgvhxhld2bxlrrgi"; depends=[]; }; ascii = derive2 { name="ascii"; version="2.4"; sha256="0k675an7sl00bslx4yb6vvvgnp1kl244cfjljv632asqdm3rkmrv"; depends=[codetools digest survival]; }; asciiSetupReader = derive2 { name="asciiSetupReader"; version="2.4.0"; sha256="02s3p0qqa9h1kyx96c29blwgfkdm50p10kr14wklh19gibiznyfj"; depends=[data_table haven miniUI readr rstudioapi shiny stringr vroom zoo]; }; asciicast = derive2 { name="asciicast"; version="1.0.0"; sha256="0vga88cq2hzi0bwq43n1yz5cm8kaag9xpg8v73gj06fb93lhha9x"; depends=[curl jsonlite processx tibble uuid V8]; }; @@ -6163,7 +5997,7 @@ in with self; { askpass = derive2 { name="askpass"; version="1.1"; sha256="07q0ik8jzk44vpwh48rr3fnpd7dzsdhjjsl4l850rffv3dyq4h6v"; depends=[sys]; }; aslib = derive2 { name="aslib"; version="0.1.1"; sha256="0vzrxxj298skgv6gn9cbhr75ywmh5amsk9m02zncl20jcydf9j91"; depends=[BatchExperiments BatchJobs BBmisc checkmate corrplot ggplot2 llama mlr parallelMap ParamHelpers plyr reshape2 RWeka stringr yaml]; }; asnipe = derive2 { name="asnipe"; version="1.1.16"; sha256="0ky4v85gry8r265z8p7mi9kzq6j3s032jg4wddkzjjqgxzyzjl5y"; depends=[MASS Matrix]; }; - aspect = derive2 { name="aspect"; version="1.0-5"; sha256="0pbc0daxw20xcbgqyyd5gbs9kmbaf2dq8ajllx0mnfwdcak9jfgj"; depends=[]; }; + aspect = derive2 { name="aspect"; version="1.0-6"; sha256="13pb1pslyka706v13b7hdrzzn5bxmj2l5irpd9f1pm1n8a1ivrrl"; depends=[]; }; aspi = derive2 { name="aspi"; version="0.2.0"; sha256="0rhvxw243vvdv3hxa6pi343gcjc2cbxq1jzqirl9k1l4i3897l87"; depends=[]; }; asremlPlus = derive2 { name="asremlPlus"; version="4.3-31"; sha256="07wljbi1j1g8g3w5shz2n3945ixap75hvx114rbi8313iwmfr3xw"; depends=[dae doParallel dplyr foreach ggplot2 RColorBrewer reshape sticky stringr]; }; assemblerr = derive2 { name="assemblerr"; version="0.1.1"; sha256="12kwdp71bgbk67d4038j2bhbw9ja3vqm0m01bzdsrpk4dxh2p3d3"; depends=[cli glue magrittr purrr rlang tidyselect vctrs]; }; @@ -6180,7 +6014,7 @@ in with self; { assertive_matrices = derive2 { name="assertive.matrices"; version="0.0-2"; sha256="16sykzcndv6y2d43x6v9n7m95kv76364h39kh10w4z0xw6ksfqil"; depends=[assertive_base]; }; assertive_models = derive2 { name="assertive.models"; version="0.0-2"; sha256="0bn4j4v5qvb2d672cgri61p8d9v258pmz35y3lvm6b9mdxwdi9mr"; depends=[assertive_base]; }; assertive_numbers = derive2 { name="assertive.numbers"; version="0.0-2"; sha256="0jc3ss64j4m7bjydhagwwmka5n7c72vpw4kfcch0m5jvkq5qrqds"; depends=[assertive_base]; }; - assertive_properties = derive2 { name="assertive.properties"; version="0.0-4"; sha256="0sqs54acs9qk9kvm32rxzfbzxz1l8mjahpfnw7r30z2brgz661jw"; depends=[assertive_base]; }; + assertive_properties = derive2 { name="assertive.properties"; version="0.0-5"; sha256="1pgljbwwbvbl4kc5c8mcv0qbzq3k6fzi29k88811yml263sm92dn"; depends=[assertive_base]; }; assertive_reflection = derive2 { name="assertive.reflection"; version="0.0-5"; sha256="1g9lpwzy6r2xmyi2mlbcccnfgyzhzbmx5bsicf3vkffxrlkrpjn2"; depends=[assertive_base]; }; assertive_sets = derive2 { name="assertive.sets"; version="0.0-3"; sha256="1cqvh2syvh5b6d85h601zjmsdbbf3h8q98ids4dfl4frdshpasc7"; depends=[assertive_base]; }; assertive_strings = derive2 { name="assertive.strings"; version="0.0-3"; sha256="0n6jrk88670g4ym0r8ii40a08a90z1xadj8wcryk8h0nl04dchfm"; depends=[assertive_base assertive_types stringi]; }; @@ -6189,18 +6023,17 @@ in with self; { assertthat = derive2 { name="assertthat"; version="0.2.1"; sha256="17wy5bdfzg73sg2clisg1k3zyn1adkj59x56m5nwia2k8z67zkw5"; depends=[]; }; assignPOP = derive2 { name="assignPOP"; version="1.2.4"; sha256="1zzapgzf09l39bckwykzr8im2wxmndpmzykll2wi7njwlklpjry3"; depends=[caret doParallel e1071 foreach ggplot2 MASS randomForest reshape2 stringr tree]; }; assignR = derive2 { name="assignR"; version="2.2.0"; sha256="0bz45d9j6d4xq8bdqzv5g063ail38k1j2xmpd88nzj448ch3kcig"; depends=[geosphere maptools mvnfast raster rgdal rlang sp]; }; - assist = derive2 { name="assist"; version="3.1.7"; sha256="0avxaa3v4gvb5d7fg761f9l5nr8nyqdq6sq408zpyaki6s6q3acf"; depends=[lattice nlme]; }; assocInd = derive2 { name="assocInd"; version="1.0.1"; sha256="16yzgvlqbapjhvzm5nw8vfrhh8mp9llnhck4bpgmszyrh93z1ha5"; depends=[]; }; assortnet = derive2 { name="assortnet"; version="0.12"; sha256="1vyzrb8vsi9pcdn6jd83k77bg0q2a3dwdvlnmxnshqiif2pakb8m"; depends=[]; }; ast2ast = derive2 { name="ast2ast"; version="0.1"; sha256="146dlj5mdgjbmwkz8qy978350b3khhgdhilzlbwnkl9m0li299cd"; depends=[purrr R6 Rcpp RcppArmadillo RcppXPtrUtils]; }; asteRisk = derive2 { name="asteRisk"; version="1.4.0"; sha256="0sph8jjayrgq0gl6n8hlhxpi4xv5bk2h2g47xx1jajihgkh88wgm"; depends=[deSolve nanotime onion Rcpp RcppParallel]; }; aster = derive2 { name="aster"; version="1.1-2"; sha256="0vf1ffkn4a3bz2lgz1gn2hjgp8c2v9ch05d5r1gh2q77zijvry1m"; depends=[trust]; }; aster2 = derive2 { name="aster2"; version="0.3"; sha256="17d200sg0vn1fj6lb480dhszm70q6ipjldilb3x0jp72hiczakk9"; depends=[Matrix]; }; - astroFns = derive2 { name="astroFns"; version="4.1-0"; sha256="0g5q0y067xf1ah91b4lg8mr9imj0d6lgig7gbj3b69fn335k363g"; depends=[]; }; + astroFns = derive2 { name="astroFns"; version="4.2-1"; sha256="0c81q9xddd9m2lhbv7r2aq1w262vjamcv8qg4mgrndww8n6vf8zn"; depends=[]; }; astrochron = derive2 { name="astrochron"; version="1.1"; sha256="0gvdilsacgbdcwz8598psxan3q5im5iw6xrn9zbdbg7sswrvc5ff"; depends=[doParallel fields foreach IDPmisc iterators multitaper viridisLite]; }; astrodatR = derive2 { name="astrodatR"; version="0.1"; sha256="00689px4znwmlp6qbj6z2a51b7ylx1yrrjpv6zjkvrwpv6lyj9fw"; depends=[]; }; astrolibR = derive2 { name="astrolibR"; version="0.1"; sha256="0gkgry5aiz29grp9vdq9zgg6ss47ql08nwcmz1pfvd0g0h9h75l8"; depends=[]; }; - astsa = derive2 { name="astsa"; version="1.14"; sha256="09zx2q419p0b1c336ybh4i62v5dvn3sp39dxn5kwlrqchjj7f5z6"; depends=[]; }; + astsa = derive2 { name="astsa"; version="1.15"; sha256="0mllsq0xdqkviyvs77lq565r1vznsj1qp9cnlj5p48k9v76d7arp"; depends=[]; }; asus = derive2 { name="asus"; version="1.0.0"; sha256="16hp8xajb631a5amm1cvhzq8z4cwh1vjiavv3n11fzpxyskhmfrb"; depends=[rwt wavethresh]; }; asylum = derive2 { name="asylum"; version="1.0.1"; sha256="1s2irvwv7lnfr9f67fccw1zi5bn92c30l7n3h8bhb44azli37924"; depends=[]; }; asymLD = derive2 { name="asymLD"; version="0.1"; sha256="1q05pxwn6arpalspgf2m0cym4ivnwyv94i58k9kaihd37kvm5lgc"; depends=[]; }; @@ -6215,7 +6048,7 @@ in with self; { atlas = derive2 { name="atlas"; version="1.0.0"; sha256="02wm22j40llmdi6z3rzgbc5fpkzmjfq0xar33bypvj1dx1zxygnd"; depends=[httr testthat]; }; atmcmc = derive2 { name="atmcmc"; version="1.0"; sha256="05k69b5wlysz3kh0yiqvshgvr0nyz34zkvn6bjs30cwz7s9j21pn"; depends=[]; }; atmopt = derive2 { name="atmopt"; version="0.1.0"; sha256="1h79ngq1236gz4w29fs3nj46a3m1x8a28z3xnhc6wn3a46cf8zzi"; depends=[DoE_base gtools hierNet]; }; - atom4R = derive2 { name="atom4R"; version="0.1-2"; sha256="19wv79gy2n0fxi1djlhcswggr43na42qqhpw60q5s1zaiqcfc3k9"; depends=[httr jsonlite keyring R6 rdflib XML zip]; }; + atom4R = derive2 { name="atom4R"; version="0.2"; sha256="006sbr49bk9x3w129y5mbrp6pa5i93qns6mqccwm24n2xbhrxlbg"; depends=[httr jsonlite keyring R6 rdflib XML zip]; }; atsd = derive2 { name="atsd"; version="1.2.0"; sha256="0jan8r5f2r3l2xpdf9rrv4smkr2l645rfdgdfjb1xa54jd3pqvqs"; depends=[httr RCurl]; }; attachment = derive2 { name="attachment"; version="0.2.4"; sha256="1nvq94l544rgddx5jcvwhap7qz8h292pphvb97ip6jljgjc1dlqw"; depends=[desc glue knitr magrittr rmarkdown roxygen2 stringr]; }; attempt = derive2 { name="attempt"; version="0.3.1"; sha256="1ylgg7jcp8wqmxgf1mydnvh26k0mr8jyjla4hw06730r40yrs58m"; depends=[rlang]; }; @@ -6226,7 +6059,6 @@ in with self; { auctestr = derive2 { name="auctestr"; version="1.0.0"; sha256="15b1x0c9yhl91gir7jmivp8vxzc8q7wvb0mgam9454avc6l29x4y"; depends=[dplyr tidyr]; }; auctionr = derive2 { name="auctionr"; version="0.1.0"; sha256="0kfx81irqr9mfp4n86z7q5nclcci8vlpvq9zid7miyw3rci7dfvi"; depends=[numDeriv]; }; audio = derive2 { name="audio"; version="0.1-10"; sha256="1pf4mwqar15v7y6sq8wkfqnr6rgpq9ywwsahzr76n6klijl33iw2"; depends=[]; }; - audiolyzR = derive2 { name="audiolyzR"; version="0.4-9"; sha256="09jsrjy15vcn6da0kgk06ghayyrf3s853gqv8qdawg745ky2hbgi"; depends=[hexbin plotrix RJSONIO]; }; audiometry = derive2 { name="audiometry"; version="0.3.0"; sha256="0v6lhkm298xgdny0fhpldfwj8s4ljr21w6y6sv3vvyl87qjgwx8i"; depends=[ggplot2]; }; audit = derive2 { name="audit"; version="0.1-2"; sha256="0c8b94a5am196sbvmjxya7cg4aq6fcxr8c958fxx3jmy9r4hn6s2"; depends=[]; }; auditor = derive2 { name="auditor"; version="1.3.3"; sha256="1y6qpbc78yv2w1y9p0mczv69s661i9n2y0x09c5p3hdka7km662w"; depends=[DALEX ggplot2 ggrepel gridExtra hnp scales]; }; @@ -6236,7 +6068,6 @@ in with self; { augmentedRCBD = derive2 { name="augmentedRCBD"; version="0.1.5"; sha256="1bfb1jqakghf1nb3zwzf69cywwxwr1whzvyig8g3qa8ciq5f1h3i"; depends=[dplyr emmeans flextable ggplot2 mathjaxr moments multcomp multcompView officer Rdpack reshape2 stringi]; }; auk = derive2 { name="auk"; version="0.5.1"; sha256="0mf2rwf7sihmk6mla87gznh0s1rqxpijcjjv035iq3id6c81h03l"; depends=[assertthat countrycode dplyr httr magrittr readr rlang stringi stringr tidyr]; }; aum = derive2 { name="aum"; version="2022.2.7"; sha256="0a2nh1fnn7z4c592gj280w8yb54wi8msfdmg8gzbz52m1x3pxbi0"; depends=[data_table Rcpp]; }; - aurelius = derive2 { name="aurelius"; version="0.8.4"; sha256="00bpf9sggvnajpmg3zsdgfjinkb6wbrcf1ris7qfhh1rp5rz4m4m"; depends=[gbm glmnet jsonlite]; }; aurin = derive2 { name="aurin"; version="0.6.0"; sha256="0nh6jy0pkwfxzcxz1xcdcnqd9pkrddmdmfb2pjalfmp04z66h6dv"; depends=[checkmate cli glue httr jsonlite magrittr ows4R R6 sf stringr]; }; ausplotsR = derive2 { name="ausplotsR"; version="1.2.7"; sha256="0vlldbdbgplk6a9n2xkac8i5nxf0y2p4zbrw5q9a3qc71zfl33yj"; depends=[betapart curl ggplot2 gtools httr jose jsonlite mapdata maps maptools plyr R_utils sp vegan]; }; auth0 = derive2 { name="auth0"; version="0.2.1"; sha256="077nqh28q3b9jb25fy0157l06zpx3x0rg4z5dz2dqsh88xy4nhqj"; depends=[htmltools httr shiny shinyjs yaml]; }; @@ -6269,6 +6100,7 @@ in with self; { available = derive2 { name="available"; version="1.0.5"; sha256="1mlyzmfskam3d0mnr5hncxi2jhc5lhny1ynvxvbnx15vj8f6r7y5"; depends=[cli clisymbols crayon desc glue jsonlite memoise SnowballC stringdist tibble tidytext udapi yesno]; }; avar = derive2 { name="avar"; version="0.1.1"; sha256="1i0bk3y0ca58ihwn4di8rpkp5vs2j5b80rcvaf72n9h2hp8i2ncz"; depends=[Rcpp RcppArmadillo simts]; }; averisk = derive2 { name="averisk"; version="1.0.3"; sha256="02j27d4jxgy2bk5sgxp1xdfyqr321civs99qj0g8cp34gwqk0j3m"; depends=[MASS]; }; + avidaR = derive2 { name="avidaR"; version="1.0.1"; sha256="0kkxa5s33zqyfp84sffm39a8nyprmqpip04xn512w4k3gsl4647p"; depends=[base64enc circlize dplyr httr R6 RColorBrewer readr tibble tidyr xml2]; }; avocado = derive2 { name="avocado"; version="0.1.0"; sha256="0qy9ripwydm3f70rpxwk0asc7r25hg8jcbrr4rz8bxs93q1lsz8x"; depends=[]; }; aweSOM = derive2 { name="aweSOM"; version="1.2"; sha256="0sd4jzx9gf13nk3hkmzmjrkwwvv5qsggi4vhvd1y47iann7xl4qd"; depends=[bslib cluster data_table DT e1071 fields foreign ggplot2 haven htmltools htmlwidgets kernlab kohonen rclipboard RColorBrewer readODS readxl rmarkdown shiny viridis]; }; aweek = derive2 { name="aweek"; version="1.0.2"; sha256="00kzff09rmxz99yq3g97xbmh3xqyhfyjl84q9gayy9kkha8aiml4"; depends=[]; }; @@ -6289,7 +6121,6 @@ in with self; { aziztest = derive2 { name="aziztest"; version="0.2.1"; sha256="0rpnyrb7zi42l1fc8ni0r5d0y6a4dr56917z8i54mv1jrk4hijjd"; depends=[]; }; azuremlsdk = derive2 { name="azuremlsdk"; version="1.10.0"; sha256="0s64kjrmcdnjdwh5mdm5vxgvrl9ghvfv6bair7qfzz32jlab99m0"; depends=[DT ggplot2 htmltools plyr reticulate rstudioapi servr shiny shinycssloaders]; }; b6e6rl = derive2 { name="b6e6rl"; version="1.1"; sha256="17scdskn677vaxx1h2jypqaffvjgczryplg17nr3wigi1x0cxg7a"; depends=[]; }; - bPeaks = derive2 { name="bPeaks"; version="1.2"; sha256="1z6jghcmw0lwv17ms7gdp5zzimaawq3ahbwkxa4062g373592smd"; depends=[]; }; bRacatus = derive2 { name="bRacatus"; version="1.0.7"; sha256="1xzrwmd6wj5c1nqrg7wry4zjq2np010dzilg631vgf7f7vg9ch94"; depends=[data_table geojsonio jsonlite maptools plotfunctions raster rgbif rgdal rgeos rworldmap sp]; }; bReeze = derive2 { name="bReeze"; version="0.4-3"; sha256="17nc6qvw9l6sq8knd1mk193md2y3z1jlcjymqzl389yxj8s0i2il"; depends=[lubridate]; }; bSims = derive2 { name="bSims"; version="0.3-0"; sha256="055hqa5w4gaqz9mms9yj85wg0pgl6xa568nbjxm4qc75rsy91qg5"; depends=[deldir intrval MASS mefa4 pbapply]; }; @@ -6324,14 +6155,14 @@ in with self; { bamboo = derive2 { name="bamboo"; version="0.9.25"; sha256="1il8sn8ck36b1m9hazhf6gmr58iqi2hjn0rrpcv1laij0lybrcws"; depends=[rscala]; }; bambooHR = derive2 { name="bambooHR"; version="0.1.0"; sha256="1m9kzr698lgcilmr5w5zs6q9rgpcdvqiavrhh6c4ar6ii07n274s"; depends=[cli curl dplyr fs glue httr janitor jsonlite lubridate magrittr purrr rlang stringr testthat tibble tidyr withr]; }; bamdit = derive2 { name="bamdit"; version="3.4.0"; sha256="0x7dl2f8qg8df07g4k692501rqn3q5zf12npx9zbbbvv7zb23rlf"; depends=[ggExtra ggplot2 gridExtra MASS R2jags rjags]; }; - bamlss = derive2 { name="bamlss"; version="1.1-6"; sha256="0p3hx01209yjgw8cd8s1ns1n502f5dyvi650d58195w88xycvr7c"; depends=[coda colorspace Formula Matrix MBA mgcv mvtnorm sp survival]; }; - bamp = derive2 { name="bamp"; version="2.1.0"; sha256="0d72s0vzy32zcd9sw1zlxc0whh5dpvlk7r9680b9smpzb58ijgfi"; depends=[abind coda]; }; + bamlss = derive2 { name="bamlss"; version="1.1-7"; sha256="0nr130c3z2d47yfrsbwg1hl62vqilpmmgvgn6y64wv089llbcs1d"; depends=[coda colorspace Formula Matrix MBA mgcv mvtnorm sp survival]; }; + bamp = derive2 { name="bamp"; version="2.1.1"; sha256="1w5c2a5ncfahkb5a4yczjyrknyad26gs0xyflkv6i09r34aixyqg"; depends=[abind coda]; }; bandit = derive2 { name="bandit"; version="0.5.0"; sha256="03mv4vbn9g4mqikd9map33gmw2fl9xvb62p7gpxs1240w5r4w3fp"; depends=[boot gam]; }; bang = derive2 { name="bang"; version="1.0.1"; sha256="0m7p9gzspkyp40ir842ff4b1827w9rh7x49kpp3y4dpi83krqy5a"; depends=[bayesplot rust]; }; bannerCommenter = derive2 { name="bannerCommenter"; version="1.0.0"; sha256="1i0b3v4n0xylcbrg9i3a28z037m27vjfg61xz2hl99wavn0bsl1j"; depends=[]; }; banter = derive2 { name="banter"; version="0.9.5"; sha256="07m2k5q2v4c7rdbdrahxab5f8597xk4iadf49asp3jjzdj9haj4x"; depends=[dplyr ggplot2 gridExtra magrittr randomForest rfPermute rlang swfscMisc tibble tidyr]; }; banxicoR = derive2 { name="banxicoR"; version="0.9.0"; sha256="0vchm2hnqm45fhn8k38rcam4vkazmifcl40390s2r04bgvqr0pnl"; depends=[rvest stringr xml2]; }; - barcode = derive2 { name="barcode"; version="1.1"; sha256="14zh714cwgq80zspvhw88cs5b82gvz4b6yfbshj9b7x0y2961nxd"; depends=[lattice]; }; + barcode = derive2 { name="barcode"; version="1.3.0"; sha256="1kk5nwh810l5vix6qzwl28cfi8rk7vc35hv73whk1bkndv2y4qx0"; depends=[lattice]; }; bardr = derive2 { name="bardr"; version="0.0.9"; sha256="02499b3j10j7qq3whz9qijfp3amp0s1ji8qk76c53dsnkj8f9hvs"; depends=[]; }; barplot3d = derive2 { name="barplot3d"; version="1.0.1"; sha256="182kpiknv3id1bsgcc6b3ahbxmm8x3lxcpf1r6rckpr3s0whfx3g"; depends=[rgl]; }; bartBMA = derive2 { name="bartBMA"; version="1.0"; sha256="15syk5a3lgzfyp17wk8mk14317yxsr47br26kyah5jg3dq4cyqdg"; depends=[BH mvnfast Rcpp RcppArmadillo Rdpack]; }; @@ -6344,6 +6175,7 @@ in with self; { base64enc = derive2 { name="base64enc"; version="0.1-3"; sha256="13b89fhg1nx7zds82a0biz847ixphg9byf5zl2cw9kab6s56v1bd"; depends=[]; }; base64url = derive2 { name="base64url"; version="1.4"; sha256="0n1c2b68vza1dh7sk38v6biiwm72c4jpl79kpdg1bsb0hq9qy18x"; depends=[backports]; }; baseballDBR = derive2 { name="baseballDBR"; version="0.1.2"; sha256="0w54g1avcqamc12lmvjchlqbqck9jfjccm441k03nsql460mpydq"; depends=[dplyr magrittr rvest xml2]; }; + baseballr = derive2 { name="baseballr"; version="1.2.0"; sha256="1lx10w56rjfdnqihrrxw35fnar3692jp11g4d9xxghw716w9ypsq"; depends=[cli data_table dplyr ggplot2 glue httr janitor jsonlite lubridate magrittr pitchRx progressr purrr Rcpp RcppParallel rlang rvest stringr tibble tidyr]; }; basecamb = derive2 { name="basecamb"; version="1.1.0"; sha256="02svxz0mlk2r4s0g8lizcwmp9nhbwgp6q3c9p9pmsf1nry4j3lbf"; depends=[assertive_types assertthat dplyr Hmisc mice purrr survival]; }; basedosdados = derive2 { name="basedosdados"; version="0.2.1"; sha256="0mbnpz0w7sx4awfkhf6jdnnp1a2zj6q0wamiwqqs86wbdp9mjam2"; depends=[bigrquery cli DBI dbplyr dotenv dplyr fs glue googleAuthR httr magrittr purrr Rcpp readr rlang scales stringr tibble typed writexl xml2]; }; baseflow = derive2 { name="baseflow"; version="0.13.2"; sha256="02ygx32dfszk66f33wfszkvwi51v8zw2s45y9nlrgfws9rlpzll2"; depends=[airGR]; }; @@ -6383,16 +6215,16 @@ in with self; { bayesPO = derive2 { name="bayesPO"; version="0.3.1"; sha256="1n9m89lhdj0ng3570x23kcjyjv85bky0hqrs1sl7qxjdzxacsisl"; depends=[coda Rcpp RcppEigen RcppProgress]; }; bayesPop = derive2 { name="bayesPop"; version="9.0-1"; sha256="15lisc0wvijmdjgw7n5fadbz4g702v9rp748h5xp5r6qk32g3njx"; depends=[abind bayesLife bayesTFR data_table fields googleVis MortCast plyr reshape2 rworldmap wpp2012 wpp2019]; }; bayesQR = derive2 { name="bayesQR"; version="2.3"; sha256="1c6y7r9h9626ghp68pl5k1g0l95fwd6dp0jfznmhy53qza0ny8z4"; depends=[]; }; - bayesSurv = derive2 { name="bayesSurv"; version="3.3"; sha256="00brysldz0zbjbjs0qnd2mbpc3ipyz7224bnbwlf8d3b6ivw8iwv"; depends=[coda smoothSurv survival]; }; + bayesSurv = derive2 { name="bayesSurv"; version="3.4"; sha256="0z9f44vkdxhpi6ymqwsidp5y0lxxj4cm78jf588aqj009anz6422"; depends=[coda smoothSurv survival]; }; bayesTFR = derive2 { name="bayesTFR"; version="7.1-1"; sha256="0grkrcgn1x1qaajyamzlp7csmsmmslbjbmajk42m5g7cxxljvylr"; depends=[coda data_table lifecycle MASS mvtnorm wpp2019]; }; - bayesZIB = derive2 { name="bayesZIB"; version="0.0.3"; sha256="0787k6m66rvqj1y1plykqpphd3sd19jy30k5yd275cywnn04hgvj"; depends=[BH ggplot2 Rcpp RcppEigen rstan rstantools StanHeaders]; }; + bayesZIB = derive2 { name="bayesZIB"; version="0.0.4"; sha256="02n76vw38xd1p6j2r505mkbfvnwij7i5lx8x6w9hrsnh9q0dy6dw"; depends=[BH ggplot2 Rcpp RcppEigen rstan rstantools StanHeaders]; }; bayesammi = derive2 { name="bayesammi"; version="0.1.0"; sha256="1vfcmk47x71c5akj3ppxzb74293pikspknkkv08f8p15v0chk7fs"; depends=[dplyr ggplot2 lme4 magrittr MASS mvtnorm rlang rstiefel scales tibble tidyr tmvtnorm]; }; bayesanova = derive2 { name="bayesanova"; version="1.5"; sha256="1h2z5r1ikrdi1j0cpzy3qdw28m1i6ddz6006amdnz2r3b0wivffm"; depends=[MCMCpack]; }; bayesbio = derive2 { name="bayesbio"; version="1.0.0"; sha256="08qa4lzkrcwin7n3kzfqfdlnlqahdmjl1lxpdh29n780cgyjfvs0"; depends=[]; }; bayesboot = derive2 { name="bayesboot"; version="0.2.2"; sha256="0976ryd0gbw3kpmxg2qxyp1m2swnrpa86vdhvqrqxp7fcrs8cs2z"; depends=[HDInterval plyr]; }; bayesbr = derive2 { name="bayesbr"; version="0.0.1.0"; sha256="0zx123xqw2qglwxsnq0jy56kwk6zczslagapij9aj9n5bsifbcmx"; depends=[BH coda dplyr fdrtool Formula ggplot2 loo magrittr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringr tidyr]; }; bayescopulareg = derive2 { name="bayescopulareg"; version="0.1.3"; sha256="0jzj1iwd8g1kpypg6dl3anhay7kjvznfkyzri3sdf538s6vr88m5"; depends=[mvtnorm Rcpp RcppArmadillo RcppDist]; }; - bayescount = derive2 { name="bayescount"; version="0.9.99-5"; sha256="0c2b54768wn72mk297va3k244256xlsis9cd6zn6q5n1l7ispj6j"; depends=[coda rjags runjags]; }; + bayescount = derive2 { name="bayescount"; version="0.9.99-8"; sha256="1aqj8n0jzayyym1akm2w70fw96i9j1nw4yn47jz75ckwrndjg33k"; depends=[coda rjags runjags]; }; bayesdfa = derive2 { name="bayesdfa"; version="1.2.0"; sha256="0bj9x21bmpbag2y5lh2l8j9cbsir0133sg7a5lsp3q9vpzvx28hk"; depends=[BH dplyr ggplot2 loo mgcv Rcpp RcppEigen RcppParallel reshape2 rlang rstan rstantools StanHeaders viridisLite]; }; bayesdistreg = derive2 { name="bayesdistreg"; version="0.1.0"; sha256="04slvxzbqdi2ak3dlw4lfx55rhw28js8yjmvjpy8vvgq39vcx3dq"; depends=[MASS sandwich]; }; bayesforecast = derive2 { name="bayesforecast"; version="1.0.1"; sha256="0wnz6qblm3ib7lpj860s4lhrs4gvmyrmk779r38rybfvxw4xssii"; depends=[astsa bayesplot BH bridgesampling forecast ggplot2 gridExtra loo lubridate MASS prophet Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders zoo]; }; @@ -6405,7 +6237,7 @@ in with self; { bayesmeta = derive2 { name="bayesmeta"; version="3.0"; sha256="035kjg86sfd3j8g9421id6z208rfmpk63qp0fpssv44zb96wy4wv"; depends=[forestplot metafor mvtnorm numDeriv]; }; bayesmix = derive2 { name="bayesmix"; version="0.7-5"; sha256="0s1a221vwia92pinja2r5b5abm4dhcrs81m4frqnf0522qh0y75f"; depends=[coda rjags]; }; bayesmove = derive2 { name="bayesmove"; version="0.2.1"; sha256="1l6i8qh7l53x0133gjc5jvri4vnnfviq9y3mcr1kfa5j84gfnmsf"; depends=[dplyr dygraphs furrr future ggplot2 leaflet lubridate magrittr MCMCpack progress progressr purrr Rcpp RcppArmadillo rlang sf shiny tictoc tidyr]; }; - bayesnec = derive2 { name="bayesnec"; version="2.0.2.3"; sha256="0f3d045crlnnks7mi5fp7lyrpqgsjhyp4c7vf2ghz1346l6vdb2n"; depends=[brms dplyr evaluate extraDistr formula_tools ggplot2 loo purrr rlang tidyr tidyselect]; }; + bayesnec = derive2 { name="bayesnec"; version="2.0.2.4"; sha256="1jiyx9kmlabximslmp8m0f35qc7ngh59jxkf4im3qmqfn36b6q3m"; depends=[brms dplyr evaluate extraDistr formula_tools ggplot2 loo purrr rlang tidyr tidyselect]; }; bayesplay = derive2 { name="bayesplay"; version="0.9.2"; sha256="06i16a36b26p0r635bl37kvk7k083p970154yhkv80p7qc84n4sv"; depends=[gginnards]; }; bayesplot = derive2 { name="bayesplot"; version="1.9.0"; sha256="0hqy597ang53phxnl084hak35ffqz9lw9hygax7370gpkjws908a"; depends=[dplyr ggplot2 ggridges glue posterior reshape2 rlang tibble tidyselect]; }; bayespref = derive2 { name="bayespref"; version="1.0"; sha256="0gwlzs7qkgmf90np7xv85d27jjqggyhfj00vpya664a2znyjb3jm"; depends=[coda lattice MASS MCMCpack RColorBrewer]; }; @@ -6413,20 +6245,17 @@ in with self; { bayesrules = derive2 { name="bayesrules"; version="0.0.2"; sha256="0a1a1aq91ary985xd0qqc1sgjlyfcrjh7ngzcy4f7j09a7ch3j4b"; depends=[dplyr e1071 ggplot2 groupdata2 janitor magrittr purrr rstanarm]; }; bayess = derive2 { name="bayess"; version="1.4"; sha256="0axipk5hn2hw3g4dfh7y3xa0dxqmi8kqpbr77nl14y7ydpija6xm"; depends=[combinat gplots MASS mnormt]; }; bayest = derive2 { name="bayest"; version="1.4"; sha256="1ax1z5aw0irpr5qmfscvbssrz58ablx0nkl0d9fx51f2g1cwm65n"; depends=[MCMCpack]; }; - bayestestR = derive2 { name="bayestestR"; version="0.11.5"; sha256="0lz8mzacxgmll576p88654mrvlk4pzvhwwghvn5pm7zxisgx0kq0"; depends=[datawizard insight]; }; + bayestestR = derive2 { name="bayestestR"; version="0.12.1"; sha256="1fbkpagc5zznrafy7h68nhx43a1yg4v7242pbqjkd0h2481c101z"; depends=[datawizard insight]; }; bayesvl = derive2 { name="bayesvl"; version="0.8.5"; sha256="1gb2in8hjiqb3daqz6phn1639i6p2w641kxrm3zh4rm3d6hg6hzr"; depends=[bayesplot bnlearn coda dplyr ggplot2 reshape2 rstan StanHeaders viridis]; }; bayfoxr = derive2 { name="bayfoxr"; version="0.0.1"; sha256="1295296mbjpmd0bg1pfxvyp0az3sry6gsq9ir3l8x64w5a4qrzd5"; depends=[]; }; baymedr = derive2 { name="baymedr"; version="0.1.1"; sha256="0lsp9g9xjwwf2znh4vld41pgdn55ncvmdsyg84ifhdqzjrsgwc6f"; depends=[rlang stringr]; }; baystability = derive2 { name="baystability"; version="0.1.0"; sha256="1zv4bf5a4p21w2qpr6lcsgsxb0xv15v8p33031rsypmnbs9i80dp"; depends=[dplyr ggfortify ggplot2 lme4 magrittr MASS matrixStats reshape2 rlang rstiefel scales tibble tidyr tidyverse]; }; - baytrends = derive2 { name="baytrends"; version="2.0.7"; sha256="1nzwj2k07w4yvgs1vf0mbsqyvyppx2mj6hqkcvb9npalsc8g9dm4"; depends=[dataRetrieval digest dplyr fitdistrplus knitr lubridate memoise mgcv pander plyr readxl sessioninfo survival]; }; + baytrends = derive2 { name="baytrends"; version="2.0.8"; sha256="0la75qngy09hvcyrgnra37m3v7hpn8y7crz2nw73vrm118prj9mq"; depends=[dataRetrieval digest dplyr fitdistrplus knitr lubridate memoise mgcv pander plyr readxl sessioninfo survival]; }; bazar = derive2 { name="bazar"; version="1.0.11"; sha256="1q2w5pvlb51lzbb5k719sf1lrhffandkfqlcvi2prw4dmq7qjxv9"; depends=[kimisc]; }; bbdetection = derive2 { name="bbdetection"; version="1.0"; sha256="1j6xcbfsrg3wcr1rpddj7ia33szn5bs0wk4mzq42d761clsr5qq8"; depends=[ggplot2 Rcpp xtable zoo]; }; - bbefkr = derive2 { name="bbefkr"; version="4.2"; sha256="1wjx652w3p41sq71a2zdzmb7frjxm6xvcgrc2ark2spwb0lbjjw6"; depends=[]; }; - bbemkr = derive2 { name="bbemkr"; version="2.0"; sha256="015c57s8mpimm82nddnh382wlkisxgdmc2hvp7k38pcnqxc5gb5q"; depends=[MASS]; }; bbl = derive2 { name="bbl"; version="1.0.0"; sha256="135i619lliy93dvgb7ymrcdh20y2b1j7s0y6awzcs3w0hbyd8j5z"; depends=[pROC RColorBrewer Rcpp]; }; - bbmle = derive2 { name="bbmle"; version="1.0.24"; sha256="1bck8rmink4wsk8pcbnj4d60svxymp29pxbzwj8p9gzsg42c1v81"; depends=[bdsmatrix lattice MASS Matrix mvtnorm numDeriv]; }; - bbo = derive2 { name="bbo"; version="0.2"; sha256="19xrbla3bb3csg3gjjrpkgyr379zfwyh293bcrcd6j8rnm6g4i01"; depends=[]; }; - bbotk = derive2 { name="bbotk"; version="0.5.2"; sha256="0k1vlh14mfbcgdw2yfhab7shkrqm4d2h6af12mybr9gks26xmw82"; depends=[checkmate data_table lgr mlr3misc paradox R6]; }; + bbmle = derive2 { name="bbmle"; version="1.0.25"; sha256="0mdj21q7k0fp4cj7la14vmcjmp49zqm57g7r6zrwmxpv0acwda46"; depends=[bdsmatrix lattice MASS Matrix mvtnorm numDeriv]; }; + bbotk = derive2 { name="bbotk"; version="0.5.3"; sha256="13qj8qysqismv9k9rfw770r7w8jdaw82n71k7sp3wsrlhxjxw734"; depends=[checkmate data_table lgr mlr3misc paradox R6]; }; bbreg = derive2 { name="bbreg"; version="2.0.2"; sha256="0mi2834v4cvrhvpnzkb4lgkqq993c3c1yzsxdnmny4p6yxw1q547"; depends=[expint Formula pbapply statmod]; }; bbricks = derive2 { name="bbricks"; version="0.1.4"; sha256="1hv4hvnns9vgl6c3n7kg3g9mfcp26ksps29hdl5nwi28cgkx80w2"; depends=[]; }; bbsBayes = derive2 { name="bbsBayes"; version="2.4.1"; sha256="1fy4jfx83fjhf350vwafpf0kf2wi482a78sy3dla4k1mkg1l9wwa"; depends=[dplyr geofacet ggplot2 ggrepel jagsUI latticeExtra mgcv progress rappdirs rgdal sbtools sf stringr]; }; @@ -6452,7 +6281,7 @@ in with self; { bcv = derive2 { name="bcv"; version="1.0.1.4"; sha256="1iln1blr2sdjjv66g73jkj26h1kzfs2sfvw5k7b76mgc0703k45s"; depends=[]; }; bdDwC = derive2 { name="bdDwC"; version="0.1.15"; sha256="0yraq8a0wgz12rzi2dx0gdcz5rx99qd2pzw972wjqyq3rs41pwx0"; depends=[shiny shinyBS shinydashboard shinyFiles shinyjs]; }; bda = derive2 { name="bda"; version="15.2.5"; sha256="19m7xrsckw0lncmi0qsmy194f2c9lmi1vac37h9jfvkb3i30fx20"; depends=[boot]; }; - bdc = derive2 { name="bdc"; version="1.0.0"; sha256="1hpdkdhhfs3c0i7xv27jmhfq0yrj4mn64c725m468v9kxnqpqih9"; depends=[CoordinateCleaner dplyr DT foreach fs ggplot2 here magrittr purrr qs readr rgnparser rnaturalearth sf stringdist stringi stringr taxadb tibble tidyselect]; }; + bdc = derive2 { name="bdc"; version="1.1.0"; sha256="18hki7mwxppr9404xb9ry8m9mrgml4961g1536ak1jhzx9hc7jfn"; depends=[CoordinateCleaner dplyr DT foreach fs ggplot2 here magrittr purrr qs readr rgnparser rnaturalearth sf stringdist stringi stringr taxadb tibble tidyselect]; }; bdchecks = derive2 { name="bdchecks"; version="0.1.7"; sha256="1pzsvn1m1f9bdmhxmh57pvn9jm4z41rkvv6h60hq2lfgkapnjy7q"; depends=[bdDwC data_table DT finch knitr rgbif shiny shinyBS shinydashboard shinyjs spocc yaml]; }; bdclean = derive2 { name="bdclean"; version="0.1.15"; sha256="14cy8yaqd6bg2zyh2wvndydk9sigaydavxl4cfypqz5kqdhj82z9"; depends=[bdchecks bdDwC data_table DT finch knitr leaflet rgbif rmarkdown shiny shinydashboard shinyjs spocc]; }; bde = derive2 { name="bde"; version="1.0.1"; sha256="1f25gmjfl58x4pns89abfk85yq5aad3bgq9yqpv505g5gxk62d3v"; depends=[ggplot2 shiny]; }; @@ -6466,14 +6295,12 @@ in with self; { bdribs = derive2 { name="bdribs"; version="1.0.4"; sha256="19qakmdw3l8vfxkr4p1ydkyfs4cmq37lqzw7l5zx5rdn6zlhqwh4"; depends=[rjags]; }; bdscale = derive2 { name="bdscale"; version="2.0.0"; sha256="1hkkfd69g2bg2y4hicjs6bnw9f0zw74jy0dpadchnzw17lffpms3"; depends=[ggplot2 scales]; }; bdsmatrix = derive2 { name="bdsmatrix"; version="1.3-4"; sha256="1sh6pg43rgqvips4fx0k4vmp5i9lmniix0bqwj2yq5m06gs227i5"; depends=[]; }; - bdvis = derive2 { name="bdvis"; version="0.2.28"; sha256="1yl2rciag3i2gx3lzycm55497wwbhyy7wmsf928bigi1jz6z2s8q"; depends=[chron ggplot2 lattice leafletR maps plotrix plyr rgdal sqldf taxize treemap]; }; bdynsys = derive2 { name="bdynsys"; version="1.3"; sha256="07gfyp0qwq9y1cnh7lhcz7q0b1s51cjwlbpll50l2cza2dszmf29"; depends=[caTools deSolve Formula Hmisc MASS matrixStats plm pracma]; }; bea_R = derive2 { name="bea.R"; version="1.0.6"; sha256="15pdbwz7av8862bl144n998qk0w9rqwip9m2brdm5hj7id5xdlif"; depends=[chron colorspace data_table DT ggplot2 googleVis gtable htmltools htmlwidgets httpuv httr jsonlite magrittr munsell plyr Rcpp scales shiny shinydashboard stringi stringr xtable yaml]; }; - beadarrayFilter = derive2 { name="beadarrayFilter"; version="1.1.0"; sha256="044dq5irc00v2f2gjz0vb69w7q7b84lppc55ganabdv4f0dxdblc"; depends=[beadarray RColorBrewer]; }; beadplexr = derive2 { name="beadplexr"; version="0.4.1"; sha256="1n37qk4p2kgcrb2w4xmgnrgibjv0pdmlzd1y0c1z6njszg2livgz"; depends=[cluster dplyr drc fpc ggplot2 magrittr mclust purrr raster rlang tibble tidyr yaml]; }; beakr = derive2 { name="beakr"; version="0.4.3"; sha256="0l6475l5d58g5ahz4b3vrdlvl656p2rasni17gz4y1l2rd0pvvh4"; depends=[base64enc httpuv jsonlite magrittr mime R6 stringr webutils]; }; beam = derive2 { name="beam"; version="2.0.2"; sha256="17c7zww1160jxm0q6vb5h59zipjjfyc3pls30y5v4vyk7kr9rdvx"; depends=[assertthat BH fdrtool igraph knitr Matrix Rcpp RcppArmadillo]; }; - beanplot = derive2 { name="beanplot"; version="1.2"; sha256="0wmkr704fl8kdxkjwmaxw2a2h5dwzfgsgpncnk2p2wd4768jknj9"; depends=[]; }; + beanplot = derive2 { name="beanplot"; version="1.3.1"; sha256="1b8mvlcsv5l9g08ag92hndsvk8jmgxvznhzgazc8y4296kp8l5a9"; depends=[]; }; beans = derive2 { name="beans"; version="0.1.0"; sha256="12kxd6hnag93whncmab17yrqiif644lzbl1ramz8kz21mqvkjsfw"; depends=[]; }; beanz = derive2 { name="beanz"; version="2.4"; sha256="18i4ygz83l60fdfkl4yg9kp5n2vmqn6yd7qkpkiplq0mzg5s4nk9"; depends=[BH loo Rcpp RcppEigen rstan rstantools StanHeaders survival]; }; beast = derive2 { name="beast"; version="1.1"; sha256="0ikbnzdzp2lv1nh5mxxanra81v4dl6svg3ywqcqd6wgzri70a4ry"; depends=[RColorBrewer]; }; @@ -6488,10 +6315,9 @@ in with self; { behaviorchange = derive2 { name="behaviorchange"; version="0.5.1"; sha256="09q60hvnsjaq76x2agqgbmmk0wwzmwnmhbr34bdxm90cymbxrw5v"; depends=[BiasedUrn data_tree DiagrammeR DiagrammeRsvg ggplot2 googlesheets4 gridExtra gtable knitr rmdpartials ufs viridis yum]; }; behavr = derive2 { name="behavr"; version="0.3.2"; sha256="01ny099m2zmvlalwiq3nqkgynnxn1mdspch15lkawwd40q8s9s4p"; depends=[data_table]; }; belex = derive2 { name="belex"; version="0.1.0"; sha256="1563yngc1lvncmx3h6kgsj1r6k3hvxidh6h9rb7apxs2rq5k32ms"; depends=[XML]; }; - belg = derive2 { name="belg"; version="1.5.0"; sha256="0l2gh5nm37vrfjl1wwa8zhgz67fbral5g9w59npz6swc9xqmxlgp"; depends=[Rcpp RcppArmadillo]; }; + belg = derive2 { name="belg"; version="1.5.2"; sha256="0v7ljy6xkbck880fd8v54cnbjp8dr662wn7wm87g9888nzps327a"; depends=[Rcpp RcppArmadillo]; }; bellreg = derive2 { name="bellreg"; version="0.0.1"; sha256="17a0ac5ab9yblkl3cwv9vf1l6s027r34n4lqw9fs8bfs1inxbn9p"; depends=[BH extraDistr Formula magic MASS numbers Rcpp RcppEigen Rdpack rstan rstantools StanHeaders]; }; bench = derive2 { name="bench"; version="1.1.2"; sha256="16s3qa70bvfd692c0agvi27hp09b07qrzrz6jy2yd7xpimv0m4dg"; depends=[glue pillar profmem rlang tibble]; }; - benchden = derive2 { name="benchden"; version="1.0.5"; sha256="1cwcgcm660k8rc8cpd9sfpzz66r55b4f4hcjc0hznpml35015zla"; depends=[]; }; benchmarkme = derive2 { name="benchmarkme"; version="1.0.7"; sha256="0ymgsxzrvnpyvs0cff09d3lrkl12qyqx5bwammsc4vgl5ng9p69p"; depends=[benchmarkmeData doParallel dplyr foreach httr Matrix tibble]; }; benchmarkmeData = derive2 { name="benchmarkmeData"; version="1.0.4"; sha256="1n4vjkagqlm6kw2hilf4gjfcdjad0bcg652j9nl2ygbq3kdnh1vf"; depends=[dplyr tibble]; }; benchr = derive2 { name="benchr"; version="0.2.5"; sha256="1xh1n41ll50zz3v26i8lg5f92i90rc78ywnl0rczryh621whx80n"; depends=[Rcpp RcppProgress]; }; @@ -6500,14 +6326,14 @@ in with self; { benford_analysis = derive2 { name="benford.analysis"; version="0.1.5"; sha256="0y0c7l2r9s7lg9bw4ndcqwisa5l6a2cpydn1vmz88h3yva0l68cg"; depends=[data_table]; }; bentcableAR = derive2 { name="bentcableAR"; version="0.3.0"; sha256="1gjrlv94av9955jqhicaiqm36rrgmy0avxn9y7wbp2s1sbg7fyg7"; depends=[]; }; benthos = derive2 { name="benthos"; version="1.3-6"; sha256="1vywnc6k37gpaq7g59v3qa6619svcmnd8ri5zm5l0ila2s3ccb2c"; depends=[dplyr lazyeval readr]; }; - berryFunctions = derive2 { name="berryFunctions"; version="1.21.2"; sha256="0gspikfvl0cp6x0a15w3vbqfds2hmc1sb9bi4v3mniwhi2kh8izy"; depends=[abind]; }; + berryFunctions = derive2 { name="berryFunctions"; version="1.21.14"; sha256="1dzhkg5gl5sjwd6hv6gn5arr88r8jz5qz6d5cmbk4cxi0ld8v84i"; depends=[abind]; }; bestNormalize = derive2 { name="bestNormalize"; version="1.8.2"; sha256="0pbyn0ay43jcxssxgvivvfakcwq0y23c2qq6a01656q9lqbv9f1r"; depends=[butcher doParallel doRNG dplyr foreach LambertW nortest purrr recipes tibble]; }; bestSDP = derive2 { name="bestSDP"; version="0.1.2"; sha256="1rff6jij9wmlpalzilvid8jvj2pczrchx0yrg0vhy00j64zg6jzs"; depends=[dplyr DT ggplot2 readxl rlist shiny shinyBS shinydashboard shinyjs shinythemes shinyWidgets stringr tidyr]; }; bestglm = derive2 { name="bestglm"; version="0.37.3"; sha256="1zncy958hlwyyxrp6yvq1inq6mpyrbr6cdkf8maijfirr5j8f0ya"; depends=[glmnet grpreg lattice leaps pls]; }; bestridge = derive2 { name="bestridge"; version="1.0.7"; sha256="10nlk1vrzmgxfia9b3skmg5594ab5s3d64k2awyxybkz2pzz7gb1"; depends=[MASS Matrix pheatmap Rcpp RcppEigen survival]; }; - betaBayes = derive2 { name="betaBayes"; version="1.0"; sha256="15dp5dd0sw613xjkdfqw4iizfdagflp0qwykmng8ml6agwd21s4p"; depends=[betareg coda Rcpp RcppArmadillo]; }; + betaBayes = derive2 { name="betaBayes"; version="1.0.1"; sha256="1a7ng6ym47scgj47frrhs76r6ipq6mhgf3ivbg2npqpg7hjcz2ci"; depends=[betareg Rcpp RcppArmadillo]; }; betacal = derive2 { name="betacal"; version="0.1.0"; sha256="19wgpgf9yhckl9qx9v24f4yh055wfalphcxwm7lg68px6ap2pxl9"; depends=[]; }; - betafunctions = derive2 { name="betafunctions"; version="1.6.1"; sha256="051d4fryvcdfbsm087mxqlx247jz671wx5rffsffg828azj2mxh9"; depends=[]; }; + betafunctions = derive2 { name="betafunctions"; version="1.7.0"; sha256="0vppsx9q1l4i6idkffqvy2ywwhjz2ap2533580g6yqvpcsv6vf5c"; depends=[]; }; betalink = derive2 { name="betalink"; version="2.2.1"; sha256="1wskr8nh1jzcrnc8fn58lscphsvj5z9p1i1pnpfdjn60mdb09rkp"; depends=[igraph plyr stringr]; }; betapart = derive2 { name="betapart"; version="1.5.6"; sha256="08rphgdqxgkih70kqnn7x1hkahl309pa363zbqsdwk0lmfq2azkh"; depends=[ape doSNOW fastmatch foreach geometry itertools picante rcdd snow]; }; betaper = derive2 { name="betaper"; version="1.1-2"; sha256="0gh5xjimg0wgv626g3y34mvgrji2aylnm89iwadg7d6g4s457ynp"; depends=[vegan]; }; @@ -6538,14 +6364,14 @@ in with self; { bib2df = derive2 { name="bib2df"; version="1.1.1"; sha256="0d57883df774qqwpssmly3f1gci32yc5sgwc3x8f2rjih23s1nf6"; depends=[dplyr httr humaniformat stringr]; }; biblio = derive2 { name="biblio"; version="0.0.6"; sha256="079p0qzmi3sg2ff7ln9lg65lf7r402rldqfpxmfvckhm9s6b29b4"; depends=[stringr yamlme]; }; bibliometrix = derive2 { name="bibliometrix"; version="3.2.1"; sha256="1iar9v9isn8c445lj5g6wrznsy9xn7xmyik0km5c98hxjsibwfzx"; depends=[bibliometrixData dimensionsR dplyr DT factoextra FactoMineR forcats ggplot2 ggrepel igraph Matrix openxlsx plotly pubmedR RColorBrewer readr readxl rscopus shiny SnowballC stringdist stringr tidyr tidytext]; }; - bibliometrixData = derive2 { name="bibliometrixData"; version="0.2.0"; sha256="00x1kcdf60j2d6vyjaq6vvfi185j29r401gbl7mmpqa4qw4cf739"; depends=[]; }; + bibliometrixData = derive2 { name="bibliometrixData"; version="0.3.0"; sha256="0dkg5g9il95w9glzvhjdgp8z30prydspvpz5bb403vaizykwv9kl"; depends=[]; }; biblionetwork = derive2 { name="biblionetwork"; version="0.1.0"; sha256="0nhx9bk7r5l0bvj98clnmwf53ihghf48zai4nj6pcgr2rb69fvjj"; depends=[data_table Rdpack]; }; bibs = derive2 { name="bibs"; version="1.1.1"; sha256="0slxqhcm4fhdmr2dj1c31zs8sgl39267179nbc59jlpb0z77z2d6"; depends=[GIGrvg]; }; bibtex = derive2 { name="bibtex"; version="0.4.2.3"; sha256="0vdwx6808r73pk15263f33bkqbfmb08d8jkmr4d7h4ml414ikbbv"; depends=[stringr]; }; biclique = derive2 { name="biclique"; version="1.0.5"; sha256="1fdf2r1jc2x8yw0fcw7yyjdxz4b870w6y7mr68qixqxwpl6943zq"; depends=[]; }; biclust = derive2 { name="biclust"; version="2.0.3"; sha256="0lgyc2f04dhr65cwga78pradxsdzgjrpp8vphchqn60ab1z95dlp"; depends=[additivityTests colorspace flexclust ggplot2 lattice MASS tidyr]; }; biclustermd = derive2 { name="biclustermd"; version="0.2.3"; sha256="1knhz96k5giq3d16i3akl5gbxrzx3vxm97cb3ivaw835fr9zrmr5"; depends=[biclust doParallel dplyr foreach ggplot2 magrittr nycflights13 phyclust tidyr]; }; - bidask = derive2 { name="bidask"; version="0.1.1"; sha256="1xykrk993bq1diflwbw4340b2jsn51l962qgwm50rz6hrakjhn6q"; depends=[xts zoo]; }; + bidask = derive2 { name="bidask"; version="1.0.0"; sha256="1f5i95bbwb2svx2gcj559x9vydwbaqba2slzsx1w4l9sfm2j79wr"; depends=[xts zoo]; }; bife = derive2 { name="bife"; version="0.7.1"; sha256="0d1hfzji3769nsa5xvlmn7sbn21igwx3aa7vxlcdn1b9ykh7fx76"; depends=[data_table Formula Rcpp RcppArmadillo]; }; bifurcatingr = derive2 { name="bifurcatingr"; version="1.0.0"; sha256="0msbdr2m4xmvnd00yklk2b8c8qwr11d5gc1x22sqd16fgj9y0qvf"; depends=[igraph MASS]; }; bigDM = derive2 { name="bigDM"; version="0.4.1"; sha256="147xqnrmdsg0p359idxwhjqzi68w03mbhzbggzcfrngf5pj5dbyn"; depends=[crayon future future_apply MASS Matrix RColorBrewer Rdpack rlist sf spatialreg spdep]; }; @@ -6555,18 +6381,18 @@ in with self; { bigQueryR = derive2 { name="bigQueryR"; version="0.5.0"; sha256="051c8rkj77dm78237dzhf3lcdawv0xv72pwfiim9bi89z9mp6f9m"; depends=[assertthat googleAuthR googleCloudStorageR httr jsonlite]; }; bigReg = derive2 { name="bigReg"; version="0.1.2"; sha256="1hmvh5j40zpzz6c88hmikphps8rb741yvkg60dxmkfl8gxqsrp3w"; depends=[MASS Rcpp RcppArmadillo uuid]; }; bigSurvSGD = derive2 { name="bigSurvSGD"; version="0.0.1"; sha256="08i6hwfr4rpvmxfa0vx8bi2dsa63iasj049ndwfn6zgvai6qaz0s"; depends=[bigmemory doParallel foreach Rcpp survival]; }; - bigalgebra = derive2 { name="bigalgebra"; version="1.0.1"; sha256="1lm9i1ric2baywpvnx0zza1vfp7wcan27n96x6cg9q5018fjczpz"; depends=[BH bigmemory Rcpp]; }; + bigalgebra = derive2 { name="bigalgebra"; version="1.1.0"; sha256="0d2paa5zl672imn4y1xjr6sbf8w1pja1bx2mzcynm0k4g8l305g5"; depends=[BH bigmemory Rcpp]; }; biganalytics = derive2 { name="biganalytics"; version="1.1.21"; sha256="19drir6vclzz1ffccvnkxnmiqnwmddiqm7y64pz4j6ifxpc1igfy"; depends=[BH biglm bigmemory foreach Rcpp]; }; bigassertr = derive2 { name="bigassertr"; version="0.1.5"; sha256="00vdg8r4nv495kqdskig0hd1b7m93fygx8xjr7lvaav0lkxlaim9"; depends=[]; }; bigchess = derive2 { name="bigchess"; version="1.9.1"; sha256="1vdzx185y1agh1xjf7qcfi2s6l7qzm1kx6b2kr3cbz2in88bws3n"; depends=[processx]; }; bigdatadist = derive2 { name="bigdatadist"; version="1.1"; sha256="16gkybwcp9sxqb0iic2fhmc4gndr44ayg14wrfcjvjaj4g5r6xs2"; depends=[FNN MASS pdist rrcov]; }; bigdist = derive2 { name="bigdist"; version="0.1.4"; sha256="1qfnmhyfadmnnagbhdl4jjrb53i1srszf19idp8fy6bczbjq85yi"; depends=[assertthat bigstatsr furrr proxy]; }; biglasso = derive2 { name="biglasso"; version="1.5.1"; sha256="18f7xa1fdgp3xjf4ihwhrhg8pk2rg79zgk3fcwgh0nywv6zmsfb8"; depends=[BH bigmemory Matrix ncvreg Rcpp RcppArmadillo]; }; - bigleaf = derive2 { name="bigleaf"; version="0.7.1"; sha256="0hsssz5973vapkmmh9dgzrijyjj1s75iarq3cpfi7ljm4n748qig"; depends=[robustbase solartime]; }; + bigleaf = derive2 { name="bigleaf"; version="0.8.1"; sha256="0ac74rssrpk8asg8rcjjwhqbsc8lc7n7x03ci55vsi88x5wldj99"; depends=[robustbase solartime]; }; biglm = derive2 { name="biglm"; version="0.9-2.1"; sha256="0iy9xr2bq42wlizgwlz7w5kh9206yqkw9h2cr6mcsmizgjg3rkvd"; depends=[DBI]; }; biglmm = derive2 { name="biglmm"; version="0.9-2"; sha256="1zj1h2hszps3w913j2dk4cyj5jsqkkxsm3pcjlc4jnq810j100l6"; depends=[DBI]; }; bigmds = derive2 { name="bigmds"; version="2.0.1"; sha256="05sph85z4c4fiwd429hx9chgd7rsn48irr168yy1dj9daaqm49pl"; depends=[]; }; - bigmemory = derive2 { name="bigmemory"; version="4.5.36"; sha256="03pg8mxdc7q0249visjmc8bc3xmwxsfg3i2n6higicj4cfz7zihq"; depends=[BH bigmemory_sri Rcpp]; }; + bigmemory = derive2 { name="bigmemory"; version="4.6.1"; sha256="0hainqkm7cs8gjm42vkpdrr0284smsbwdfackp34yv7dhxy1avmm"; depends=[BH bigmemory_sri Rcpp uuid]; }; bigmemory_sri = derive2 { name="bigmemory.sri"; version="0.1.3"; sha256="0mg14ilwdkd64q2ri9jdwnk7mp55dqim7xfifrs65sdsv1934h2m"; depends=[]; }; bignum = derive2 { name="bignum"; version="0.3.0"; sha256="0r7vmix40646vdiw9mzzbz5ihrr08rldnpvy8l9ilp73cn9189mj"; depends=[BH cpp11 rlang vctrs]; }; bigparallelr = derive2 { name="bigparallelr"; version="0.3.2"; sha256="14rkcig4j93c231sfm43331ykmvxjx2fiz5nhblj2rfzkxli4css"; depends=[bigassertr doParallel flock foreach parallelly RhpcBLASctl]; }; @@ -6578,7 +6404,7 @@ in with self; { bigsplines = derive2 { name="bigsplines"; version="1.1-1"; sha256="1kf04p2lglzdi1fdryk27nmj2a2jca2ii7ki8vak93sq21isb179"; depends=[quadprog]; }; bigstatsr = derive2 { name="bigstatsr"; version="1.5.6"; sha256="1mir9fr2c9wrx0ldmwliv99z2qrpy8fij1bzjy40pzcaim9mfk7d"; depends=[bigassertr bigparallelr cowplot foreach ggplot2 ps Rcpp RcppArmadillo rmio RSpectra tibble]; }; bigstep = derive2 { name="bigstep"; version="1.0.3"; sha256="0ygp1vljqqn5vzpjxlv9d6fxxv3bi2kfyqfs1gf0jgxwb9417b82"; depends=[bigmemory magrittr matrixStats R_utils RcppEigen speedglm]; }; - bigtabulate = derive2 { name="bigtabulate"; version="1.1.5"; sha256="1jvp3m0ms2cav9z8vvhh80gsa0kvc351brv2jq99rxv1mwvpa4xj"; depends=[BH biganalytics bigmemory Rcpp]; }; + bigtabulate = derive2 { name="bigtabulate"; version="1.1.9"; sha256="0ws73fasmwsjbv5l63iln164ai7n3dy6wwpm8vqkpys7wl1i3xxy"; depends=[BH biganalytics bigmemory Rcpp]; }; bigtcr = derive2 { name="bigtcr"; version="1.1"; sha256="1l03yc28afdm7glbw4ay0zsywjgqg5l90qz1hfhslsy8gg7d5wq5"; depends=[]; }; bigtime = derive2 { name="bigtime"; version="0.2.1"; sha256="08vgi0q194sjg5arhfp3nahv11ry5phj9j1w9a5y35xm3ds8acyg"; depends=[corrplot dplyr ggplot2 magrittr Rcpp RcppArmadillo RcppEigen tidyr]; }; bigutilsr = derive2 { name="bigutilsr"; version="0.3.4"; sha256="096h0v277n39bvipfbfd730lz3qkplfnv58zmzsyy3al9f7lajxl"; depends=[bigassertr bigparallelr nabor Rcpp robustbase RSpectra]; }; @@ -6587,15 +6413,12 @@ in with self; { bild = derive2 { name="bild"; version="1.2-0"; sha256="0aygx77fn2w249q6ghpxclhm9xb2ngdzrirldr3lpidg6ivc443v"; depends=[]; }; billboard = derive2 { name="billboard"; version="0.1.0"; sha256="1z3y8dijhc1381y91n5zq305xzm1gpvs0g4mdpfr7zrblpa8ws39"; depends=[tibble]; }; billboarder = derive2 { name="billboarder"; version="0.3.1"; sha256="189ngvg84rcwhrivxskmjv3srhadvzr4p1v8pf11axyv2qn01b0x"; depends=[ggplot2 htmltools htmlwidgets jsonlite magrittr rlang scales shiny]; }; - bimetallic = derive2 { name="bimetallic"; version="1.0"; sha256="181qi4dr0zc7x6wziq7jdc1his20jmprfpq3hrfm56fr5n1sj8wl"; depends=[]; }; bimets = derive2 { name="bimets"; version="2.1.0"; sha256="0lwx2ww0qr8hfwgw1ycazd3scypk0jyv3nqvcfd652992f1n24mq"; depends=[xts zoo]; }; - bimixt = derive2 { name="bimixt"; version="1.0"; sha256="0nhszpzjqy8z3vngl5jdzqxzshnn92wgi0ci5n3n5kzi24xkfrzc"; depends=[pROC]; }; binGroup = derive2 { name="binGroup"; version="2.2-1"; sha256="0cb7j6b0s3y56mv1967awwri0kv0rf3sr3vwf9gc2zbjggxi9ffp"; depends=[partitions Rdpack]; }; binGroup2 = derive2 { name="binGroup2"; version="1.1.0"; sha256="1hgz1w0bxbd82rx96s6b63wjczsb1x2l6j526wcnwix36kibv3p3"; depends=[ggplot2 partitions rBeta2009 Rcpp RcppArmadillo Rdpack scales]; }; binMto = derive2 { name="binMto"; version="0.0-7"; sha256="0rg9rsdy14jx7zjv60krcz1vh0sxqimsai0wynhx2sx0kydw4ngy"; depends=[mvtnorm]; }; binancer = derive2 { name="binancer"; version="1.2.0"; sha256="1diy0g3mvzxs0jxybpk42m3ccs5qk1ynw116aaxsn5k9ch7crj3l"; depends=[data_table digest httr jsonlite logger snakecase]; }; binaryGP = derive2 { name="binaryGP"; version="0.2"; sha256="0i4xi0gxk0lamjdygyx0azdp3kfqmva1g20nl3p65w4yx77m88d6"; depends=[GPfit lhs logitnorm nloptr Rcpp RcppArmadillo]; }; - binaryLogic = derive2 { name="binaryLogic"; version="0.3.9"; sha256="19ig9qgjjnivfihjy41pc13qlrb95679mmk4zks5lbbri8qi4qxj"; depends=[]; }; binb = derive2 { name="binb"; version="0.0.6"; sha256="0j9iyawkn1mqvf52q1abp0k00r5239rkvvmvl3cmp4jlffxd4xd7"; depends=[knitr rmarkdown]; }; binda = derive2 { name="binda"; version="1.0.4"; sha256="0fgdpdjbw95rwv7l0acfb9cf7s57q5ld2vgdvrv1pxwkyi902nh4"; depends=[entropy]; }; bindata = derive2 { name="bindata"; version="0.9-20"; sha256="0smym431w755azsawwsdk6412dfj7bz3bdc3mqzam50xard4s94l"; depends=[e1071 mvtnorm]; }; @@ -6606,7 +6429,7 @@ in with self; { bingat = derive2 { name="bingat"; version="1.3"; sha256="1y68rgafipfad78yrzcygdszgy1d5q739kap06pzr78bn3i8hiwa"; depends=[doParallel foreach gplots matrixStats network vegan]; }; binhf = derive2 { name="binhf"; version="1.0-3"; sha256="1vdw2s8zddp7gad8l3c4jpmnjcc0f5wpqbrp6gp9lgp1c3qa505y"; depends=[adlift EbayesThresh wavethresh]; }; binman = derive2 { name="binman"; version="0.1.2"; sha256="00l7m98h41r67gf0qxqis3vx63j7wylnk9vlgcyk41szkrz8ikkc"; depends=[assertthat httr jsonlite rappdirs semver xml2 yaml]; }; - binom = derive2 { name="binom"; version="1.1-1"; sha256="0mjj92dqf5q69jxzqya4izb1mly3mkydbnmlm4wb3zqqg82a324c"; depends=[]; }; + binom = derive2 { name="binom"; version="1.1-1.1"; sha256="1yxyhsd0savwirlmgnq6973slfakqyfvjm0zz60cmc9v490my8gf"; depends=[]; }; binomSamSize = derive2 { name="binomSamSize"; version="0.1-5"; sha256="1an6dcqsjh5r0w4kc3n6yfvvha5qhrb2i4bpf7g5ykhl3i60zfcc"; depends=[binom]; }; binomialRF = derive2 { name="binomialRF"; version="0.1.0"; sha256="1liqhnp4j3fxy552fi4yz5vmfzh5blpmxx6fa3g62dgnhcm9sy18"; depends=[data_table randomForest rlist]; }; binomialcftp = derive2 { name="binomialcftp"; version="1.0"; sha256="00c7ymlxk1xnx3x1814x7bcyir7q5sy4rb82dcpzf2bdly4xa1qr"; depends=[]; }; @@ -6623,14 +6446,15 @@ in with self; { bioC_logs = derive2 { name="bioC.logs"; version="1.2"; sha256="16hbw8mbr3nn1k7hr8ihp4lcvd22jk396kbaw2jjd1gw9lvbhicd"; depends=[]; }; bioOED = derive2 { name="bioOED"; version="0.2.1"; sha256="0wx58bngpzlrbbcnx8l1lqhsg51y98wcym1238p87drf64x2mj1n"; depends=[bioinactivation corrplot dplyr FME ggplot2 MEIGOR rlang tidyr tidyselect tidyverse]; }; bioPN = derive2 { name="bioPN"; version="1.2.0"; sha256="0mvqgsfc7d4h6npgg728chyp5jcsf49xhnq8cgjxfzmdayr1fwr8"; depends=[]; }; - bioRad = derive2 { name="bioRad"; version="0.5.2"; sha256="1kx1vh6p37170f1crylwyzap0c7s5d82rx7qqi95f8d26niqcjn9"; depends=[assertthat curl data_table fields ggmap ggplot2 lubridate lutz maptools raster rgdal rhdf5 sp tidyr viridis viridisLite]; }; + bioRad = derive2 { name="bioRad"; version="0.6.0"; sha256="0nzqk7mnqx25yiiayhvc6vsqfmmmc7nancvy83i2718002ifq9f2"; depends=[assertthat aws_s3 curl data_table fields ggmap ggplot2 glue lubridate lutz maptools raster rgdal rhdf5 sp tidyr viridis viridisLite]; }; bioacoustics = derive2 { name="bioacoustics"; version="0.2.8"; sha256="08qhxx7xgswjamrgg82pkg1f7w50dx9ln67d50n1p3rvrxab4061"; depends=[htmltools moments Rcpp stringr tuneR]; }; bioassays = derive2 { name="bioassays"; version="1.0.1"; sha256="1y32wxkv14l7r0f35y4hxxxh3zpw2gd4hsjmkajhmzmnvg5jdw78"; depends=[dplyr ggplot2 magrittr nplr reshape2 rlang]; }; bioclim = derive2 { name="bioclim"; version="0.2.0"; sha256="101ykpwvjgn62hqvsdh0mhwivv7iv23y57v65c85bk054y7wv6nq"; depends=[berryFunctions ggplot2 reshape2 rmarkdown terra]; }; - biocompute = derive2 { name="biocompute"; version="1.1.0"; sha256="05pqrm1j0d21w70jnsf9zvh55h85i676xwvqzsk51llw52v16d4d"; depends=[cli crayon curl digest httr jsonlite jsonvalidate magrittr rmarkdown stringr uuid yaml]; }; + biocompute = derive2 { name="biocompute"; version="1.1.1"; sha256="102n8y83z8568lwil2fb28wrjkymwmw9rzvk0a4zgsx5a3l7wl01"; depends=[cli crayon curl digest httr jsonlite jsonvalidate magrittr rmarkdown stringr uuid yaml]; }; biodosetools = derive2 { name="biodosetools"; version="3.6.0"; sha256="06i6vg0n98x91j8mkh0mbh4m7a34ghr22x6msrhdig0xh522ia5z"; depends=[bsplus cli config dplyr ggplot2 golem htmltools magrittr MASS maxLik mixtools msm pkgload rhandsontable rlang rmarkdown shiny shinydashboard shinyWidgets tidyr]; }; biogas = derive2 { name="biogas"; version="1.23.2"; sha256="05g6nyi872skvr34kw5c71ggnnjc3fv95imc327yjqhmqmwx3m19"; depends=[]; }; biogeo = derive2 { name="biogeo"; version="1.0"; sha256="14sqgg8b06gp5dajxvyj9s3ndsk7jpkfr0mkyl2l61kgp6qx53rh"; depends=[maptools raster sp stringr vegan]; }; + biogeom = derive2 { name="biogeom"; version="1.0.5"; sha256="0fx7bz78vmsrc8fx8f6nbadcslygsm1b5dm8gcwhpwbn7l2i6795"; depends=[spatstat_geom]; }; biogram = derive2 { name="biogram"; version="1.6.3"; sha256="1y7yaa6xwv11b6a4qf4qb3d7rsz0yiiq1k5mb0dbm3avydnl9c4b"; depends=[combinat entropy partitions slam]; }; biogrowth = derive2 { name="biogrowth"; version="0.2.3"; sha256="09nq71fmm06vxs9sd4vmy5jrdb537qh385vsn6p6blwj19qbc7hj"; depends=[cowplot deSolve dplyr FME formula_tools ggplot2 lamW MASS purrr rlang tibble tidyr]; }; bioimagetools = derive2 { name="bioimagetools"; version="1.1.5"; sha256="1qscyfm7mx9v9ag3hdyyvn7vwnfvms9dc1qffbyby9fr9rj3gs3q"; depends=[EBImage httr tiff]; }; @@ -6638,19 +6462,19 @@ in with self; { biokNN = derive2 { name="biokNN"; version="0.1.0"; sha256="113lynbxmv88ycvbsq9drn2f75md7yajhicfw8qd8l6lawiq1fqc"; depends=[cluster desc dplyr ggplot2 lme4 magrittr mice mitml tidyr]; }; biolink = derive2 { name="biolink"; version="0.1.7"; sha256="1i9aisvb3lvljird89fy9fx7h3s1wi6dpilycbynqyhz8xqnnszj"; depends=[DBI glue memoise rentrez RMySQL xml2]; }; biomartr = derive2 { name="biomartr"; version="1.0.2"; sha256="0hr7wks88lbfcqzjzm4x265dk4lpmc3i2ndp7xcrx8ssj76wrmkz"; depends=[biomaRt Biostrings curl data_table downloader dplyr fs httr jsonlite philentropy purrr R_utils RCurl readr stringr tibble withr XML]; }; - biometryassist = derive2 { name="biometryassist"; version="1.0.0"; sha256="1lh2bjagab644j68dwfk6q88nmb1rvclqi87mxb1cwx6y7mjyr69"; depends=[agricolae cowplot curl ellipsis farver ggplot2 interp lattice multcompView predictmeans rlang scales stringi withr]; }; + biometryassist = derive2 { name="biometryassist"; version="1.1.0"; sha256="0v3cyjdai9j3cndi23a8wi9bb9xr61jf07l5b01613glipd8zl3z"; depends=[agricolae cowplot curl farver ggplot2 interp lattice multcompView predictmeans rlang scales stringi withr]; }; biomod2 = derive2 { name="biomod2"; version="3.5.1"; sha256="065cq36phf7ncd1na440f50aa467qbwkb7pchabsan05k3zk7v9h"; depends=[abind caret checkmate dismo doParallel dplyr earth ENMeval foreach gbm ggplot2 lattice MASS maxnet mda nnet PresenceAbsence pROC purrr randomForest raster rasterVis reshape rlang rpart sp tidyr]; }; bionetdata = derive2 { name="bionetdata"; version="1.0.1"; sha256="1l362zxgcvxln47b1vc46ad6ww8ibwhqr2myxnz1dnk2a8nj7r2q"; depends=[]; }; bios2mds = derive2 { name="bios2mds"; version="1.2.3"; sha256="1k0r3fnkzfczx3wp3m8zpndk6gxca7idsp0z13rw84zjrgqaw6jm"; depends=[amap cluster e1071 rgl scales]; }; + biosensors_usc = derive2 { name="biosensors.usc"; version="1.0"; sha256="076isyk7dfjpi5db7ghk0hmz2kkdgmrnj3g9ffdnim5gxq3zsf1h"; depends=[energy fda_usc osqp parallelDist Rcpp RcppArmadillo truncnorm]; }; bioseq = derive2 { name="bioseq"; version="0.1.3"; sha256="0dnps6b97fln0b9l44g4llnmkfdfif2i454w2wwnlpzahanvbl45"; depends=[ape crayon dplyr pillar readr rlang stringdist stringi stringr tibble vctrs]; }; - bioset = derive2 { name="bioset"; version="0.2.3"; sha256="15vchim8cim42j1if0jars696rh50vmbggr9748q321f6ngm1w1i"; depends=[dplyr magrittr rlang tibble tidyr]; }; biosignalEMG = derive2 { name="biosignalEMG"; version="2.1.0"; sha256="0bbkrfqkmks4z8c7rh0k43lvm71vn3fzrw3kpj012ym77whwkvay"; depends=[signal]; }; biospear = derive2 { name="biospear"; version="1.0.2"; sha256="10y4hbncwiqpxzqvzjrmfgp804zczdgvwpjcj0dzaa0sx1njdzja"; depends=[cobs corpcor devtools glmnet grplasso MASS Matrix mboost pkgconfig plsRcox pROC PRROC RCurl survAUC survival]; }; biostat3 = derive2 { name="biostat3"; version="0.1.6"; sha256="12i8ki1yair4sycfcwrhl10khfxzx5q2slzqjwcrqfxg69q8ak4l"; depends=[MASS muhaz survival]; }; biosurvey = derive2 { name="biosurvey"; version="0.1.1"; sha256="1hhch5qagn86pcn43qlmv0azfbjc9yv58yp9v1p5s6r5ffxkgs95"; depends=[diptest doParallel foreach ks maps picante raster rgdal rgeos sp spatstat_geom vegan]; }; biotic = derive2 { name="biotic"; version="0.1.2"; sha256="1p18jkdd263dgk90626n9awkj6m4zn1n7897596fzrzrahksa978"; depends=[]; }; biotools = derive2 { name="biotools"; version="4.2"; sha256="1dyy9mk2afjbc8g1qygy6h1aksbhndm53c4sb5mfzriydl03ibxv"; depends=[boot MASS]; }; - bipartite = derive2 { name="bipartite"; version="2.16"; sha256="10flnwgsll86w1dgn4rswbshag8l35hski0nf7xkvp5fj39sy4wp"; depends=[fields igraph MASS permute sna vegan]; }; + bipartite = derive2 { name="bipartite"; version="2.17"; sha256="0lgpcvsjj7vpcbb4lgmpbvqay3s06kg3ayrpliqw16dfh3f2xpjq"; depends=[fields igraph MASS permute sna vegan]; }; bipartiteD3 = derive2 { name="bipartiteD3"; version="0.3.0"; sha256="1b4nw1hqw645j8blf2b1hhnar7ffc4bw0zb07ycfjqd2prnif8pd"; depends=[downloader dplyr purrr r2d3 RColorBrewer stringr tibble tidyr]; }; bipd = derive2 { name="bipd"; version="0.2"; sha256="0lm6yi4xnpl1vrai75jb8958mqwzilp42vik7z282g6p4ggx4ka8"; depends=[coda dplyr mvtnorm rjags]; }; biplotbootGUI = derive2 { name="biplotbootGUI"; version="1.2"; sha256="07lrs2n6s54h97vjriszszhksdbi14s2i234kwfhg7aq47k6l0jl"; depends=[cluster dendroextras MASS matlib rgl shapes tcltk2 tkrplot]; }; @@ -6670,11 +6494,12 @@ in with self; { bitops = derive2 { name="bitops"; version="1.0-7"; sha256="1i0phmq5yynla5x0frqll1gbf5ww59p3sgz1s06a354zqf9grdg9"; depends=[]; }; bitsqueezr = derive2 { name="bitsqueezr"; version="0.1.1"; sha256="0dy180r9cclq46mh0fzc68p5zm9x2z5pa8ajgsk7qycdkyw5v829"; depends=[]; }; bittermelon = derive2 { name="bittermelon"; version="0.2.1"; sha256="0acgi9x3v508igr5nr86nhxzjpl9m8nmqzg7iq65j6pvlr68n7zx"; depends=[findpython png rappdirs Unicode]; }; + bivariatemaps = derive2 { name="bivariatemaps"; version="1.0"; sha256="0ciyqf3swr86l98yfjwcnr507k5xjapk1v6iq9vnpkgrc9w3j5m9"; depends=[classInt raster rgeos sp]; }; bivgeom = derive2 { name="bivgeom"; version="1.0"; sha256="1cn8k7q011whr4f7zig85dsrkz04614z9ns2ky6k6i16s5n3glxy"; depends=[bbmle copula]; }; bivrp = derive2 { name="bivrp"; version="1.2-2"; sha256="0b38nh38vgqjllb1z9627dm86yp0s06ky1g829g8kkz7rffdp2za"; depends=[MASS]; }; biwavelet = derive2 { name="biwavelet"; version="0.20.21"; sha256="0v7arwmng2i22svj836i57q8by9x5pghjv7d35g7r35wakrm8jyx"; depends=[fields foreach Rcpp]; }; biwt = derive2 { name="biwt"; version="1.0"; sha256="1mb3x8ky3x8j4n8d859i7byyjyfzq035i674b2dmdca6mn7paa14"; depends=[MASS rrcov]; }; - bizdays = derive2 { name="bizdays"; version="1.0.9"; sha256="1ddl7mnxf5prvcmkdfmfhvxrcv8c7clm21qvmr54gwqf759afh07"; depends=[jsonlite]; }; + bizdays = derive2 { name="bizdays"; version="1.0.10"; sha256="02ni7dj7218d3rycllbdy6jw4waay9kljgyc6r1ix29wilakl2lx"; depends=[jsonlite]; }; bizicount = derive2 { name="bizicount"; version="1.0.0"; sha256="1h11cxl56j5mzdjrsb9x7csxad33xx4rd0sgvz3dbd759nbmi9am"; depends=[DHARMa Formula MASS numDeriv pbivnorm rlang texreg]; }; bjscrapeR = derive2 { name="bjscrapeR"; version="0.1.0"; sha256="18chbgiwify272iqf0w4vsqh73wbk12d8m2awc5hbnfqblz3phwd"; depends=[dplyr glue readr tibble]; }; bkmr = derive2 { name="bkmr"; version="0.2.2"; sha256="1bzr39a53p1xkq2fi2fphv2rpsml2z25xb1ycs63p3y7qis9zlky"; depends=[dplyr fields magrittr MASS nlme tibble tidyr tmvtnorm truncnorm]; }; @@ -6686,17 +6511,16 @@ in with self; { blaster = derive2 { name="blaster"; version="1.0.4"; sha256="0y2vdksmy1xngqvf7wxy5yf58830sm0bi82vn02yba1x6345ghjr"; depends=[Rcpp]; }; blastula = derive2 { name="blastula"; version="0.3.2"; sha256="084mk6xb8ivqrp8anvisfk8rvwi7qfrp5kmy66vpihmjmqh7dkyc"; depends=[base64enc commonmark curl digest dplyr fs getPass here htmltools httr jsonlite magrittr mime rlang rmarkdown stringr uuid]; }; blatent = derive2 { name="blatent"; version="0.1.1"; sha256="1jnf3i7s3mn99ff8yzygxys0w8qf6vrfk16iqgxh7jbivbrczysk"; depends=[coda Matrix mnormt R6 Rcpp RcppArmadillo truncnorm]; }; - blavaan = derive2 { name="blavaan"; version="0.4-1"; sha256="192a3k5fnfd2khm4g8rj7ja4501m6n1wnb7g8mphpvw45zbpgc5g"; depends=[bayesplot BH coda future_apply lavaan loo Matrix MCMCpack mnormt nonnest2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tmvnsim]; }; + blavaan = derive2 { name="blavaan"; version="0.4-3"; sha256="0x0vx0gj0z1i1mczvi2j2g2zmdals7wz1ja0jcbpyzmb5arzgyd9"; depends=[bayesplot BH coda future_apply lavaan loo Matrix mnormt nonnest2 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tmvnsim]; }; blendedLink = derive2 { name="blendedLink"; version="1.0"; sha256="19d1pnjag89jjvkl5a6wx531qjqp4cv5jk95md6jby27yr52r8vp"; depends=[]; }; blender = derive2 { name="blender"; version="0.1.2"; sha256="1qqkfgf7fzwcz88a43cqr8bw86qda33f18dg3rv1k77gpjqr999c"; depends=[vegan]; }; - blin = derive2 { name="blin"; version="0.0.1"; sha256="1h94azm7gli9i4v3li5c1p36p3rkcj2p5j6rqzlzf0pcqs0bsc09"; depends=[abind glmnet MASS Matrix mvtnorm]; }; blindrecalc = derive2 { name="blindrecalc"; version="0.1.3"; sha256="1kaia4mpwjh9p0m9jc694i2gy1hfqa3k04w17cnmwsfppgwq11ls"; depends=[Rcpp]; }; blink = derive2 { name="blink"; version="1.1.0"; sha256="053nw592sglzh6fgz7hj8ra6q7lqs83hhv14kcgs67b56q8a3crb"; depends=[plyr stringdist]; }; bliss = derive2 { name="bliss"; version="1.0.4"; sha256="02kln40z10wngydn7y4x5shd2dff74gb340nhagf49k8ql9p78xw"; depends=[MASS Rcpp RcppArmadillo]; }; blm = derive2 { name="blm"; version="2013.2.4.4"; sha256="1w6c30cq38j4i1q4hjg12l70mhy5viw886l1lsnxyvniy113in4i"; depends=[]; }; blme = derive2 { name="blme"; version="1.0-5"; sha256="0413j7gwr5yj14jamkizj55q7xii1a0kgazzj0ilqn2ascclz6k7"; depends=[lme4]; }; blmeco = derive2 { name="blmeco"; version="1.4"; sha256="1370djpy87816bfr0g8730x7q4d4xx9aa41iqm622q5b5zm2jzmp"; depends=[arm lme4 MASS]; }; - blob = derive2 { name="blob"; version="1.2.2"; sha256="1yn7f13icaix0apxp4drnciwdn8bx8xmbd129jd7ck4rcly0axj9"; depends=[rlang vctrs]; }; + blob = derive2 { name="blob"; version="1.2.3"; sha256="06v3ldnmf6f99riym1cjbm5rklxmg6cpdixm6armc6rxxs1xd21d"; depends=[rlang vctrs]; }; blockCV = derive2 { name="blockCV"; version="2.1.4"; sha256="1fikskjjq571rzmzmqf72z92qkvjb9wdx598kvd28y1ic0xzrgm6"; depends=[progress raster sf]; }; blockForest = derive2 { name="blockForest"; version="0.2.4"; sha256="14xggdm34hmdlz3hvvp5layk6mb016yppqf9x9rbia9lmmjbhgfh"; depends=[Matrix Rcpp RcppEigen survival]; }; blockcluster = derive2 { name="blockcluster"; version="4.5.1"; sha256="1f152m3fv0aaw2csgqvf1y231f5rjhwrkn69yyx9yb3ff65z49d8"; depends=[Rcpp rtkore]; }; @@ -6706,14 +6530,16 @@ in with self; { blockmodels = derive2 { name="blockmodels"; version="1.1.5"; sha256="1h2g13yp8xhkw9icl5bi1nkc0qfqkqhlhdqbcsp0246g9amssci9"; depends=[digest Rcpp RcppArmadillo]; }; blockrand = derive2 { name="blockrand"; version="1.5"; sha256="0bic3b8l7mp2hpwd8k1diwy6a4lj92i7s5k20i2wy8kw0c74jwfh"; depends=[]; }; blocksdesign = derive2 { name="blocksdesign"; version="4.9"; sha256="1kr3fxs8vgc96clhx5ml11jkwll1rg9gf16xg93q14jpg4hg0j9h"; depends=[plyr PolynomF]; }; - blogdown = derive2 { name="blogdown"; version="1.9"; sha256="0p6fp56b6kzxmff9grassq7f0pyblrk63gjkwzl482217pb2php9"; depends=[bookdown htmltools httpuv jsonlite knitr later rmarkdown servr xfun yaml]; }; + blogdown = derive2 { name="blogdown"; version="1.10"; sha256="1la27qvgsiiwdi7dcpl6hnmids8hcqi1a9jc2n2vh7lxs0gvipz2"; depends=[bookdown htmltools httpuv jsonlite knitr later rmarkdown servr xfun yaml]; }; blorr = derive2 { name="blorr"; version="0.3.0"; sha256="1ynvg6ar7c7p01225q9czy4gxks0p1vw3sx207l7vzqxw20wb1bn"; depends=[car data_table ggplot2 gridExtra lest Rcpp]; }; blrm = derive2 { name="blrm"; version="1.0-1"; sha256="0p0nmbxil4l89fcryrgsg9mxzb5fyg93p50aqkjy00ms05hwd0hx"; depends=[boot mvtnorm openxlsx reshape2 rjags]; }; - blsR = derive2 { name="blsR"; version="0.2.1"; sha256="0wbcpvgj72fkhv4z1gllf9lkq45mdwwnf8dnmaqwl9i5qnihy1yy"; depends=[dplyr httr jsonlite purrr rlang]; }; + blsR = derive2 { name="blsR"; version="0.3.0"; sha256="1sci8sxgmihsgid6jpz2wqykxrkgm3s6jfv6wwsln4hnrbabymy4"; depends=[dplyr httr purrr readr rlang]; }; bltm = derive2 { name="bltm"; version="0.1.0"; sha256="1sx4ii65ddvdw45za8j320v1s9d1pz5k2gx979yymhyxi8fmq69z"; depends=[mvnfast Rfast]; }; + bluebike = derive2 { name="bluebike"; version="0.0.3"; sha256="1nlxgq145igvf22ar7fpi1a7caw64jhi44fjvqsimpcqxpjycy38"; depends=[dplyr janitor leaflet lubridate magrittr readr sf stringr tidyselect]; }; bmabasket = derive2 { name="bmabasket"; version="0.1.2"; sha256="0w8y992ylyg0cyz1lfqll96fivng13lvxp0mhyb48flfnkg8rcdd"; depends=[partitions Rcpp RcppArmadillo]; }; bmass = derive2 { name="bmass"; version="1.0.3"; sha256="0dafixd996lamn5kfbqpiawblalhyw1gi394j46n2sij2r209d76"; depends=[]; }; bmem = derive2 { name="bmem"; version="1.8"; sha256="1nhybz8aarzlqjx4443hsflflgy2jcprz5dv6mwxacnyspm93vlq"; depends=[Amelia lavaan MASS sem snowfall]; }; + bmemLavaan = derive2 { name="bmemLavaan"; version="0.4"; sha256="19cf7gwb0rfjwk57lgbfj2x2jc908j43vg6w6b6qcnvl656wqkik"; depends=[Amelia lavaan MASS rsem sem snowfall]; }; bmgarch = derive2 { name="bmgarch"; version="1.1.0"; sha256="1r7hlc5d8jmk7sy7wv9yrilhla57vi9ar21dhmvfakms2z7gyg9d"; depends=[BH forecast ggplot2 loo MASS Rcpp RcppEigen RcppParallel Rdpack rstan rstantools StanHeaders]; }; bmggum = derive2 { name="bmggum"; version="0.1.0"; sha256="1r0j5gklmknyan68nc3vfn96ck414v75547486ic70v2pdr3xnpf"; depends=[BH edstan ggplot2 GGUM loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; bmixture = derive2 { name="bmixture"; version="1.7"; sha256="09ahs2dwrbqhk4aki9291v5lr5fa9mvi087zrqjmv2057ypyv2n5"; depends=[BDgraph]; }; @@ -6724,11 +6550,12 @@ in with self; { bmp = derive2 { name="bmp"; version="0.3"; sha256="0jd67r11bn98hjwgyr6gas423787xy7ji2hq7ay80blkkcj91xxx"; depends=[]; }; bmrm = derive2 { name="bmrm"; version="4.1"; sha256="1brdd5mhr5282wkdc62lgsqcxw077p69rknjk7fjcs282ahcik2s"; depends=[LowRankQP lpSolve matrixStats Rcpp]; }; bmscstan = derive2 { name="bmscstan"; version="1.1.0"; sha256="1mr56ry9jzsd2z0zffcysy01bh62cg13hi4swdhdvwmjcsb5gq97"; depends=[bayesplot coda ggplot2 LaplacesDemon logspline rstan]; }; + bmstdr = derive2 { name="bmstdr"; version="0.1.4"; sha256="01xcvjz5rinz0b30gym9d6jg70fm3qswfwd67hr1r66c4id2q584"; depends=[BH CARBayes CARBayesST ggplot2 MCMCpack Rcpp RcppEigen Rdpack rstan spBayes spTDyn spTimer StanHeaders]; }; bnclassify = derive2 { name="bnclassify"; version="0.4.6"; sha256="00akv7mg4mn7kk98r6ja3yx9h822b8hnv1k890i8kwsra3c2qgid"; depends=[assertthat BH entropy matrixStats Rcpp rpart]; }; bndovb = derive2 { name="bndovb"; version="1.1"; sha256="16mvkvwnx61jrvraagvxf56pvmf5klm8lnkqq4s5y2z92kd0clgp"; depends=[dplyr factormodel MASS nnet np pracma]; }; bnlearn = derive2 { name="bnlearn"; version="4.7.1"; sha256="028mgj6l36mypif7821yp2bsa5m1amfpwwd63bz6677plzd30f94"; depends=[]; }; bnma = derive2 { name="bnma"; version="1.5.0"; sha256="0h7nk28ny4capnji1j5m2kzsc7l8a1z7icx0iak87pk4abzqlzmm"; depends=[coda ggplot2 igraph rjags]; }; - bnmonitor = derive2 { name="bnmonitor"; version="0.1.2"; sha256="0lnwwd9bxyflk2sz7gs79ki4ypsmd7pzhysplvj9rjszwk1vlz9p"; depends=[bnlearn dplyr ggplot2 gRain gRbase purrr qgraph RColorBrewer reshape2 rlang tidyr]; }; + bnmonitor = derive2 { name="bnmonitor"; version="0.1.3"; sha256="1y4lm2x5wcndpbvs1g64avgv03jw57gks3vf0hdwwr94kxyzfway"; depends=[bnlearn dplyr ggplot2 gRain gRbase purrr qgraph RColorBrewer reshape2 rlang tidyr]; }; bnnSurvival = derive2 { name="bnnSurvival"; version="0.1.5"; sha256="1d9jmfx0id4lmw122zga7hb52vlfdfqn4amhzpsmhyck99rv92j4"; depends=[pec prodlim Rcpp]; }; bnormnlr = derive2 { name="bnormnlr"; version="1.0"; sha256="0l2r7vqikak47nr6spdzgjzhvmkr9dc61lfnxybmajvcyy6ymqs9"; depends=[mvtnorm numDeriv]; }; bnpa = derive2 { name="bnpa"; version="0.3.0"; sha256="0qsxk47i7q4d8hbs2xj5k5sf8bqyzhq7rbj4y7w8ljprznlydgl9"; depends=[bnlearn fastDummies lavaan Rgraphviz semPlot xlsx]; }; @@ -6740,9 +6567,9 @@ in with self; { bodenmiller = derive2 { name="bodenmiller"; version="0.1.1"; sha256="0rdbk3f95iw4352fl9d81ir503q072chbb4hn1k12sp1wjc3apid"; depends=[]; }; bodycomp = derive2 { name="bodycomp"; version="1.0.0"; sha256="1hi3x2chs87ba5nh7ka6xjrl5yvwqqcdyj1dg87rpaiipyl8396n"; depends=[]; }; boilerpipeR = derive2 { name="boilerpipeR"; version="1.3.2"; sha256="1dws84ghc5r6zpnr23qd4l9bkazds8ar723wkrkikjni58vshjf1"; depends=[rJava]; }; - bolasso = derive2 { name="bolasso"; version="0.1.0"; sha256="1radw0h1y1gq0lzfrdh2phnvbrxzlklm7hhbz6x4xpw6vybwbp1j"; depends=[future_apply gamlr ggplot2 glmnet Matrix progressr Rdpack tibble]; }; + bolasso = derive2 { name="bolasso"; version="0.2.0"; sha256="1fbd39jyxq0zfbybrzzwnyql2w8hf2b9133jj0nl99d1326wr7dh"; depends=[future_apply gamlr ggplot2 glmnet Matrix progressr Rdpack tibble]; }; bold = derive2 { name="bold"; version="1.2.0"; sha256="0r54ylxgmq9qnh1f36k4hafh80n86ibk4a994f8b1rnb9bq9f5cg"; depends=[crul data_table jsonlite plyr reshape stringr tibble xml2]; }; - bookdown = derive2 { name="bookdown"; version="0.25"; sha256="0v5nlm3lbm0h5cvd9j2211yqk68rkm416aq8qp6r8klj69xm1bri"; depends=[htmltools jquerylib knitr rmarkdown tinytex xfun yaml]; }; + bookdown = derive2 { name="bookdown"; version="0.26"; sha256="11din9h2sgzvg44627xc5is4psbq2b34km5sbiaprskjrf474866"; depends=[htmltools jquerylib knitr rmarkdown tinytex xfun yaml]; }; bookdownplus = derive2 { name="bookdownplus"; version="1.5.8"; sha256="1cdxz5c69cgdk7wxr0xwhzw361rpg7j8xjv9hjf1877qqmhxbrkd"; depends=[bookdown knitr magick xaringan]; }; boomer = derive2 { name="boomer"; version="0.1.0"; sha256="0nb58msk7ycim15ssjwig9i62x51ydnakq83jg6vcbqjg1a9anry"; depends=[crayon pryr rlang rstudioapi styler withr]; }; boostmtree = derive2 { name="boostmtree"; version="1.5.1"; sha256="17na38k052lzjrssvxssllm9fwpnzhr29g9wwcfkbja6rv2pw9p1"; depends=[nlme randomForestSRC]; }; @@ -6763,7 +6590,6 @@ in with self; { bootf2 = derive2 { name="bootf2"; version="0.4.1"; sha256="17wrl678x9mb5pny2vwrr6sdl2hsqr1nbjzsizp2q6l3w5m6s152"; depends=[ggplot2 MASS minpack_lm readxl]; }; bootnet = derive2 { name="bootnet"; version="1.5"; sha256="13pfmr259yikkb3y9438xz4bjn6kx5w5d2jhx441a00rvv1kb3hi"; depends=[abind corpcor dplyr ggplot2 gtools igraph IsingFit IsingSampler Matrix mgm mvtnorm NetworkToolbox networktools pbapply qgraph rlang snow tibble tidyr]; }; bootruin = derive2 { name="bootruin"; version="1.2-4"; sha256="1gbvh99snchipf13kjhymcx60s2kni23y7lv8lhzd3d402grp68h"; depends=[]; }; - bootspecdens = derive2 { name="bootspecdens"; version="3.0"; sha256="0hnxhfsc3ac4153lrjlxan8xi4sg1glwb5947ps6pkkyhixm0kc1"; depends=[MASS]; }; bootstrap = derive2 { name="bootstrap"; version="2019.6"; sha256="1546jqhhw5h177ii8jkdikyd26rv6gwkav816np1zks4p7zgsljj"; depends=[]; }; bootstrapFP = derive2 { name="bootstrapFP"; version="0.4.4"; sha256="1j9ag18s2n7cihs5hbjhibx8gikxf8fs5hx2ljfzcn0gv492qm02"; depends=[sampling]; }; boottol = derive2 { name="boottol"; version="2.0"; sha256="01dps9rifzrlfm4lvi7w99phfi87b7khx940kpsr4m9s168a2dzv"; depends=[boot plyr]; }; @@ -6772,12 +6598,11 @@ in with self; { borrowr = derive2 { name="borrowr"; version="0.2.0"; sha256="0hq9rplb22dm8nikapxnvzq10y4xzi1y7k61ghw9x1fq4fdfyy2f"; depends=[BART mvtnorm Rcpp]; }; botor = derive2 { name="botor"; version="0.3.0"; sha256="1izhpc491f54p3hz32kcp2b2yxkg59ni1caglyllg22bckw228sg"; depends=[checkmate logger reticulate]; }; boundingbox = derive2 { name="boundingbox"; version="1.0.1"; sha256="0kgpsvnq8f0qyw55rldwqapys36y6lb4w2bw2azfl4nmrrnayxbc"; depends=[gplots imager]; }; - boussinesq = derive2 { name="boussinesq"; version="1.0.3"; sha256="1j1jarc3j5rby1wvj1raj779c1ka5w68z7v3q8xhzjcaccrjhzxk"; depends=[]; }; boutliers = derive2 { name="boutliers"; version="1.1-1"; sha256="01dp1w5lxmn6nixajg6dz0qincm0i1in03q7g284v37qnszyimqs"; depends=[metafor]; }; - box = derive2 { name="box"; version="1.1.0"; sha256="13jdghfagpwr0x0yc7zg9hdysb2bzlcpc3fws4inj76v9285hdz5"; depends=[]; }; - boxplotdbl = derive2 { name="boxplotdbl"; version="1.3.0"; sha256="1y1b45q69sxbszd83s8ch10z4i55h34ixm8q7yxr7byx3px8y65n"; depends=[]; }; + box = derive2 { name="box"; version="1.1.2"; sha256="10hgq9v0bjzkcnya0k7fjlidri02c1p6ph70q3gvi29qp3b22plq"; depends=[]; }; + boxplotdbl = derive2 { name="boxplotdbl"; version="1.4.0"; sha256="0yfkkafrq329l6yxbnpwm8yqidixxh7k124xjy5xa92pbng2clbd"; depends=[]; }; boxr = derive2 { name="boxr"; version="0.3.6"; sha256="1hdm4p7zx2r566zaiyw06qg3c790gsvylrvav7g9fl4i1x6qgkyk"; depends=[assertthat bit64 digest dplyr fs glue httpuv httr jsonlite lifecycle magrittr mime purrr rio rlang stringr tibble]; }; - bp = derive2 { name="bp"; version="2.0.1"; sha256="0r41ardnxgkwd1ib8krasrhzw5q840xs1qrahh6nq38c4yw2b9yi"; depends=[cowplot dplyr ggplot2 gridExtra gtable lubridate magrittr tibble tidyr tidyselect]; }; + bp = derive2 { name="bp"; version="2.1.0"; sha256="0qdpm5nfx2jhc0s77x839jdmk07c88xf739dwf2n8hqhk24y0cdr"; depends=[cowplot dplyr ggplot2 gridExtra gtable lubridate magrittr tibble tidyr tidyselect]; }; bpAcc = derive2 { name="bpAcc"; version="0.0-1"; sha256="1q0gn6n215720d0c39awdjpxpp5ijv4yp6wah9snw1jhiphdl68q"; depends=[]; }; bpDir = derive2 { name="bpDir"; version="0.1.2"; sha256="1wkj25srsbidpcvgm6c74584ahybjy39r86dxir1vd13kbi8l120"; depends=[circular MASS plotrix]; }; bpa = derive2 { name="bpa"; version="0.1.1"; sha256="0np7q1nasrq4j7ssaipvbjgrsi9n612p9lp96frq1dgix95mcgf0"; depends=[magrittr plyr]; }; @@ -6826,23 +6651,23 @@ in with self; { briskaR = derive2 { name="briskaR"; version="1.0.4"; sha256="016gpgbf5zc9jkagj439n2ylfbmsikg0n6v76wf4lchv4wvrsby4"; depends=[deldir deSolve fasterize fftwtools MASS mvtnorm raster Rcpp RcppArmadillo rgdal rgeos sf sp testthat]; }; brlrmr = derive2 { name="brlrmr"; version="0.1.7"; sha256="0s47qz8y416x0gz91pzdpr97pmlvddwkvll454vnlafxxk9p5lds"; depends=[boot brglm MASS profileModel Rcpp]; }; brm = derive2 { name="brm"; version="1.1.1"; sha256="0kyr8mxz5g3w41kp08d47f29cff8fqrfbm1ri7hgfg2lgr1151xy"; depends=[]; }; - brms = derive2 { name="brms"; version="2.16.3"; sha256="1q93z4cf3iy4rs6pgvph6z7hc8q05iwif76hcg8p4kr6nl82nc38"; depends=[abind backports bayesplot bridgesampling coda future ggplot2 glue loo Matrix matrixStats mgcv nleqslv nlme posterior Rcpp rstan rstantools shinystan]; }; + brms = derive2 { name="brms"; version="2.17.0"; sha256="0wff5rld4kgkk2nbllvm1h4c596igzgd0q7nx1cabgl11fja7r94"; depends=[abind backports bayesplot bridgesampling coda future ggplot2 glue loo Matrix matrixStats mgcv nleqslv nlme posterior Rcpp rstan rstantools shinystan]; }; brmsmargins = derive2 { name="brmsmargins"; version="0.1.1"; sha256="17mh539d11920mv5jn20l62md2cpkizlynw01j87pij8hj63ajn3"; depends=[bayestestR brms data_table extraoperators posterior Rcpp RcppArmadillo]; }; - brnn = derive2 { name="brnn"; version="0.9"; sha256="0gyjvrakwd6nbgv94hbxvynsl52w0zswzp8fxl88rppycpgn81j6"; depends=[Formula truncnorm]; }; + brnn = derive2 { name="brnn"; version="0.9.1"; sha256="1k4hyb7sz53wz04fsjhcgwq5jblyig7bvjjr72xy605hb2njkqpw"; depends=[Formula truncnorm]; }; brokenstick = derive2 { name="brokenstick"; version="2.1.0"; sha256="0diz6p4y6yima4ykfg7m0rdkbn5j63xy8w65y1cc40pspwbsvd6d"; depends=[coda dplyr lme4 matrixsampling rlang tidyr]; }; brolgar = derive2 { name="brolgar"; version="0.1.2"; sha256="0xhv76z75zsrvcy606cv8qvz14w5g02gcs2744kv1kflaaics7dx"; depends=[dplyr fabletools ggplot2 glue magrittr purrr rlang tibble tidyr tsibble vctrs]; }; broman = derive2 { name="broman"; version="0.76"; sha256="1yjalfrfy1hvrcs3ky452mdg2ss8ikascj9yngp5fnfrrljcg9wg"; depends=[ggplot2]; }; - broom = derive2 { name="broom"; version="0.7.12"; sha256="1nbv4a4s8548h2q226xmhyp42higayh95yvllh1rcs264lmw3yh4"; depends=[backports dplyr ellipsis generics ggplot2 glue purrr rlang stringr tibble tidyr]; }; - broom_helpers = derive2 { name="broom.helpers"; version="1.6.0"; sha256="11svlfn80xl8vyrq8vqxrqii5c77kp67drnal9v9l7q1frlnq509"; depends=[broom cli dplyr labelled lifecycle purrr rlang stringr tibble tidyr]; }; - broom_mixed = derive2 { name="broom.mixed"; version="0.2.9.3"; sha256="01l7c1p1gs70jd5875jxvcziagvldvwnhk25hak5ranmxkwi7qqn"; depends=[broom coda dplyr forcats furrr nlme purrr stringr tibble tidyr]; }; + broom = derive2 { name="broom"; version="0.8.0"; sha256="16grzja9hz5mqpfzbp1r6zif1gp7swfadkm52340si9h8ifhk8b6"; depends=[backports dplyr ellipsis generics ggplot2 glue purrr rlang stringr tibble tidyr]; }; + broom_helpers = derive2 { name="broom.helpers"; version="1.7.0"; sha256="1xc12l3dy4mh0q0pxv74rixmbqwh2nag9ywdwwqa215gfg58fw1b"; depends=[broom cli dplyr labelled lifecycle purrr rlang stringr tibble tidyr]; }; + broom_mixed = derive2 { name="broom.mixed"; version="0.2.9.4"; sha256="1ck0dk5fnacvwsvhp43m983gkmskw1a7f1bjkq5hacka64lwscbn"; depends=[broom coda dplyr forcats furrr nlme purrr stringr tibble tidyr]; }; broomExtra = derive2 { name="broomExtra"; version="4.3.2"; sha256="02ijhqgymm8nv40fy4j6psqkhak3dfwz8i5k0ay3g7aic49lzcbf"; depends=[broom broom_mixed dplyr magrittr parameters performance rlang]; }; brotli = derive2 { name="brotli"; version="1.2"; sha256="07rgdgxh9bvn0qavpclxmkglwyl6ndqasxcs6j12if698dkn976b"; depends=[]; }; brr = derive2 { name="brr"; version="1.0.0"; sha256="050ivnqcaxiyypd1sxfpy6ianhzzmvs6c77ga40g3440cvfigkgw"; depends=[gsl hypergeo pander stringr SuppDists TeachingDemos]; }; brranching = derive2 { name="brranching"; version="0.7.0"; sha256="06jy3qhbr0v4m1j4j8a7fb7ic59sx4zhlsm1yb3g6rdwc00d67wj"; depends=[ape conditionz crul curl phylocomr phytools taxize]; }; - bruceR = derive2 { name="bruceR"; version="0.8.5"; sha256="04x2mvp9w0fngsmsgcrs40km6k1ydji7j515cm5bs7xbfm6li8l4"; depends=[afex cowplot crayon data_table dplyr effectsize emmeans forcats ggplot2 ggtext glue interactions lavaan lmerTest mediation performance psych see stringr tidyr]; }; + bruceR = derive2 { name="bruceR"; version="0.8.6"; sha256="1wg2i2192j2h75pz0ps813vlhjv0vpm5vmj0jh0crk9wr815ssrn"; depends=[afex cowplot crayon data_table dplyr effectsize emmeans forcats ggplot2 ggtext glue interactions lavaan lmerTest mediation performance psych see stringr tidyr]; }; brulee = derive2 { name="brulee"; version="0.1.0"; sha256="18qglyb3s45rzdp2qxc582v9rpilgqf55cs3r7zyj423ik99sgf4"; depends=[cli coro dplyr generics ggplot2 glue hardhat rlang tibble torch]; }; brxx = derive2 { name="brxx"; version="0.1.2"; sha256="08qlfnf84k3yjcvr1wm6gd96mk26xf2gz59ychb3m981228hbbs6"; depends=[blavaan blme GPArotation MASS MCMCpack rstan TeachingDemos]; }; - bs4Dash = derive2 { name="bs4Dash"; version="2.0.3"; sha256="17vpng0s0sr3bnaqq3d545s72zd5a7isdbvzh01148lzq0va710g"; depends=[bslib fresh htmltools httpuv httr jsonlite lifecycle shiny waiter]; }; + bs4Dash = derive2 { name="bs4Dash"; version="2.1.0"; sha256="1kw59hdwhwsrx76ir0c4hqsw42va6cvhzpvgzz8n976i1rrpml0x"; depends=[bslib fresh htmltools httpuv httr jsonlite lifecycle shiny waiter]; }; bs4cards = derive2 { name="bs4cards"; version="0.1.1"; sha256="0fhjj3wjhxl263lhlbm5jw9l227a5k9cpannpankr5h8bkn1408h"; depends=[htmltools magrittr rlang]; }; bsTools = derive2 { name="bsTools"; version="0.1.0"; sha256="08h029gznsw93xirsxc1ib61qpqw1k8qzc0cjha56yr4j8b8qagy"; depends=[html5]; }; bsam = derive2 { name="bsam"; version="1.1.3"; sha256="1yiplh4wcc711w59ir5hxlp3mmgsnfz01d6203vfgclzsi7ix5m9"; depends=[coda dplyr ggplot2 gridExtra lubridate msm mvtnorm rjags rworldxtra sp tibble]; }; @@ -6851,14 +6676,14 @@ in with self; { bsem = derive2 { name="bsem"; version="1.0.0"; sha256="1h4wsib6ppqj8nbvj4pzkm04bzrdkg9l7xfmzzmld9cswai4iw52"; depends=[BH coda DiagrammeR lattice magrittr Rcpp RcppEigen rstan rstantools shiny StanHeaders viridis visNetwork]; }; bshazard = derive2 { name="bshazard"; version="1.1"; sha256="1kidypyqlilf794mksjvhja8bmnd9hdhz91ywy0mcddgc6wbar4h"; depends=[Epi survival]; }; bslib = derive2 { name="bslib"; version="0.3.1"; sha256="0jcqklry1nkibz0sydsz5xdsnb4wnrrhvmyr9ji3k45bbipbap2z"; depends=[htmltools jquerylib jsonlite rlang sass]; }; - bspec = derive2 { name="bspec"; version="1.5"; sha256="0jynvir7z4q1vrvhdn6wijdrjfrkk4544nlawabw2fnfxss91a91"; depends=[]; }; - bspline = derive2 { name="bspline"; version="1.0.2"; sha256="1xrf2gph4pqvsnjd4wcxcr1cmdqwhzadrm12a4ayrk0mgqnxf4ga"; depends=[arrApply nlsic Rcpp RcppArmadillo]; }; + bspec = derive2 { name="bspec"; version="1.6"; sha256="19l1sagx6kn6i8mcs3i0h6rh7rwsyhphncv55jywpv4g6616kqcv"; depends=[]; }; + bspline = derive2 { name="bspline"; version="2.0.1"; sha256="1hg3m035fcyb5jc18g82wsam89v87xlx5nmp45xxvl31xxxwn916"; depends=[arrApply nlsic Rcpp RcppArmadillo]; }; bsplinePsd = derive2 { name="bsplinePsd"; version="0.6.0"; sha256="0f785l02hiq3f7anxqhm09f7lrqgkkqhly7f1x78cxm22hvrqyhg"; depends=[Rcpp]; }; bsplus = derive2 { name="bsplus"; version="0.1.3"; sha256="1grn2i2xxq5fhkqb7lqsfhbfckr6i3ddy7mikgxz6lifk4rc4mxx"; depends=[glue htmltools jsonlite lubridate magrittr purrr rmarkdown stringr]; }; bspm = derive2 { name="bspm"; version="0.3.9"; sha256="1r0c0gnj0ps5cs9grwss7jxx5znywi80kng0rsb3dsmacwsfpkk1"; depends=[]; }; bspmma = derive2 { name="bspmma"; version="0.1-2"; sha256="1a3p1h7bks5yrxv791wfa680v4a6q10p59iz6wvfifhf3ndlaw49"; depends=[]; }; bsreg = derive2 { name="bsreg"; version="0.0.2"; sha256="13701llj5k7vssmgb4fvxswcf9bsc4pxjvh67znbsvrv5cmjh5x3"; depends=[Matrix R6]; }; - bssm = derive2 { name="bssm"; version="2.0.0"; sha256="10gk0b235c3szll3g48w9r2iryc0hfx6chh9bvxhm5r0qsfigmla"; depends=[checkmate coda diagis dplyr magrittr posterior ramcmc Rcpp RcppArmadillo rlang sitmo tidyr]; }; + bssm = derive2 { name="bssm"; version="2.0.1"; sha256="19ii7hs4plgq31yiyr0258y22xckd5dv7k5dp2cwkzrr3h544ylz"; depends=[checkmate coda diagis dplyr magrittr posterior ramcmc Rcpp RcppArmadillo rlang sitmo tidyr]; }; bssn = derive2 { name="bssn"; version="1.0"; sha256="1brxbvcvqy8n9xpvp5kz47x5ps8hdqgnh6s49051qaylp95qm432"; depends=[ClusterR mvtnorm sn ssmn]; }; bst = derive2 { name="bst"; version="0.3-23"; sha256="1wx039cl8s1j1dwjg50ivn39fckkf8mzgrm953bg02w0p0fpz5bh"; depends=[doParallel foreach gbm rpart]; }; bsts = derive2 { name="bsts"; version="0.9.7"; sha256="00iz1rwi7z02hipmmifzzgflf16b1va3pybxgi8xk3rdwxxvjpal"; depends=[Boom BoomSpikeSlab xts zoo]; }; @@ -6875,7 +6700,7 @@ in with self; { bulletcp = derive2 { name="bulletcp"; version="1.0.0"; sha256="1k7lw8gflih47ncz8hgsj0sxbajnkhz1k7yb7rwbdnzcki3n3jln"; depends=[assertthat dplyr mvtnorm Rdpack]; }; bulletr = derive2 { name="bulletr"; version="0.1"; sha256="181rnrp62almf08gr41qnrnq8qnbqraqdvj4zixdh8fachsq2imp"; depends=[dplyr ggplot2 plotly plyr reshape2 robustbase smoother xml2 zoo]; }; bullwhipgame = derive2 { name="bullwhipgame"; version="0.1.0"; sha256="03nwf2v4zhgkxvkghpkbkxz0cnkqcwwl51ykrk25qciakfqkgfws"; depends=[shiny]; }; - bumbl = derive2 { name="bumbl"; version="1.0.1"; sha256="0dvn518x6fyccchm9bx21z9yifzqb8iqajzj494h7p8ijc6j5ml2"; depends=[broom dplyr ggplot2 glue MASS purrr rlang tidyr]; }; + bumbl = derive2 { name="bumbl"; version="1.0.2"; sha256="19ac6dny8fbsrghwyryph3czlq6h50970lhcr6cxfx0brmirvcw6"; depends=[broom dplyr ggplot2 glue MASS purrr rlang tidyr]; }; bumblebee = derive2 { name="bumblebee"; version="0.1.0"; sha256="055plkcswq7qsy3flkjjq5kqampj9s8dbc3ahzinps6s0jkcv2ad"; depends=[dplyr gtools Hmisc magrittr rmarkdown]; }; bunching = derive2 { name="bunching"; version="0.8.4"; sha256="0hb50xxlpia3149kyp0df4dmfkxvblnj7hd24c7ylglxzx2hq59j"; depends=[BB dplyr ggplot2 tidyr]; }; bunchr = derive2 { name="bunchr"; version="1.2.0"; sha256="1b8hdg2x26k0ahx4gxdpzr36hy056939r4496q3vbgyd4bbk2fbd"; depends=[shiny]; }; @@ -6888,7 +6713,6 @@ in with self; { butcher = derive2 { name="butcher"; version="0.1.5"; sha256="1yzp4zz2r9xwv2cxywwx2xmh9asnw0lyj15fix4h1ypadbxz68pd"; depends=[fs lobstr purrr rlang tibble usethis]; }; bvarsv = derive2 { name="bvarsv"; version="1.1"; sha256="1bv4fbbi8bn7sqqpjlf8w5jpgydjr15wv5v9940wc42yk792yjrx"; depends=[Rcpp RcppArmadillo]; }; bvartools = derive2 { name="bvartools"; version="0.2.1"; sha256="18spmp2w6gzh3pyfa3x609jp7f3asmkba74kpmb5sqgjvrhxybxa"; depends=[coda Rcpp RcppArmadillo]; }; - bvenn = derive2 { name="bvenn"; version="0.1"; sha256="1xrya49w5bd2b7plfxpqla60b2828rkm0rjmc4qnqzvrahsbal0y"; depends=[]; }; bvls = derive2 { name="bvls"; version="1.4"; sha256="18aaf7kk5mks3a59wwqhm1ckpn6s704l9m5nzy0x5iw0s98ijbm2"; depends=[]; }; bvpSolve = derive2 { name="bvpSolve"; version="1.4.3"; sha256="07a41nppzan812jbyj06nxdqnpw01v7snmdp5xwlm4wjw1v8z8aw"; depends=[deSolve rootSolve]; }; bwd = derive2 { name="bwd"; version="0.1.0"; sha256="1ryd5cqbpns9dsis2a9vjg6fcg23284c3dr3j3l18krdshdksfr0"; depends=[]; }; @@ -6905,7 +6729,7 @@ in with self; { c3net = derive2 { name="c3net"; version="1.1.1"; sha256="0m4nvrs41kmlakc6m203zlncqwgj94wns8kzcb31xngjcacmcq42"; depends=[igraph]; }; cAIC4 = derive2 { name="cAIC4"; version="1.0"; sha256="1qg73g0g029wkzpmp0fgvyfz8p1k3x38yqx0404cpb3dxj4n4hcg"; depends=[lme4 Matrix mgcv mvtnorm nlme RLRsim]; }; cIRT = derive2 { name="cIRT"; version="1.3.2"; sha256="1iwgxc1jl118j9yjhjix9f7dm75sj82iz7ic58g5625fxzdgnw25"; depends=[Rcpp RcppArmadillo]; }; - cNORM = derive2 { name="cNORM"; version="3.0.0"; sha256="0270lzyhk772k77a6b8hddfc23l3whyl33iypgc7lvgp7c1kxp2g"; depends=[lattice latticeExtra leaps]; }; + cNORM = derive2 { name="cNORM"; version="3.0.1"; sha256="1fvn9rcwa3bg7bmjclnxfrybkfwc90hjh805rsznl8irhbmj4262"; depends=[lattice latticeExtra leaps]; }; cOde = derive2 { name="cOde"; version="1.1.1"; sha256="1h3bp97lqd1jvgnablhxdncmvbf5qwphqbs7xy3r31vpamslz77i"; depends=[]; }; cPCG = derive2 { name="cPCG"; version="1.0"; sha256="1pfbsv2rcjsryn6nr56a7i4yb7k0m3gdfn4q9l1kpzhmv9lic7m1"; depends=[Rcpp RcppArmadillo]; }; cPseudoMaRg = derive2 { name="cPseudoMaRg"; version="1.0.1"; sha256="1mf78pilhx4mqv8n0xrdzn9wkvhnb3bs7rill7n588f18bnjp9mh"; depends=[]; }; @@ -6941,10 +6765,10 @@ in with self; { calpassapi = derive2 { name="calpassapi"; version="0.0.3"; sha256="1vhx5h7ah75cs1mlw25x7hal90m47596kr7fx2pd8fslq7il7p1b"; depends=[digest dplyr httr jsonlite stringr]; }; camerondata = derive2 { name="camerondata"; version="1.0.0"; sha256="0nj9dxwklhqyqrqfq88vpi4mdd6gvd3mzi80h8fi7hjzv5pmgqad"; depends=[]; }; campfin = derive2 { name="campfin"; version="1.0.8"; sha256="06shr4p4g3cwxs1iszpvpk83k2mss6za68fqkv5pjiz44pc89v80"; depends=[dplyr fs ggplot2 glue httr lubridate magrittr purrr readr rlang scales stringdist stringr tibble]; }; - campsis = derive2 { name="campsis"; version="1.2.0"; sha256="1nngm2g2j8q7kfa7pl11zg28mb8m9kyyc3lfxsldydm6vijlckv7"; depends=[assertthat campsismod dplyr ggplot2 MASS plyr purrr rlang tibble tidyr]; }; + campsis = derive2 { name="campsis"; version="1.2.1"; sha256="11r59i2rr9d2vrh91jhb4w0s3cgsg9ryligs0x3xiwvlcjvf1b4a"; depends=[assertthat campsismod dplyr ggplot2 MASS plyr progress purrr rlang tibble tidyr]; }; campsismod = derive2 { name="campsismod"; version="0.8.0"; sha256="1h919ci4jnwi812grbi4wjl7r86142xvb83hbhjni3yl93k0627s"; depends=[assertthat dplyr magrittr plyr purrr readr]; }; camsRad = derive2 { name="camsRad"; version="0.3.0"; sha256="06gar6qan1ka01ngjvbpcv649yvfga697mplwn1x6qnfr4ngb7cs"; depends=[httr xml2]; }; - camtrapR = derive2 { name="camtrapR"; version="2.0.3"; sha256="13zg8kx28il7rbyr2p3c1xdxx84b7shpcmgavzjqzh6wjm5bh5mh"; depends=[data_table overlap secr sp]; }; + camtrapR = derive2 { name="camtrapR"; version="2.2.0"; sha256="12lhw8r1r3xlazm1w3x73fq3krwpvbv6w3rsmlmksaai4nxp2fn8"; depends=[data_table generics ggplot2 lubridate overlap secr sf sp]; }; canadacovid = derive2 { name="canadacovid"; version="0.3.3"; sha256="1xgabz1klq4rgbs1wdffgyyq35kcs9giwc55g76kd7psnf2giclk"; depends=[dplyr httr jsonlite lubridate magrittr purrr rlang stringr tibble tidyr tidyselect]; }; canadamaps = derive2 { name="canadamaps"; version="0.1"; sha256="1i3yjhr5p06k6id3gws5dzdhf4jy143brbfhi2z4srq67xlz5agl"; depends=[dplyr magrittr rlang rmapshaper sf]; }; canadianmaps = derive2 { name="canadianmaps"; version="1.0.0"; sha256="1r45d65w8yfgwj8xf6lhsw0fi1b8j8gyayxrcs7wy56kacjjvym8"; depends=[dplyr ggplot2 ggrepel RColorBrewer rgdal sp]; }; @@ -6953,21 +6777,21 @@ in with self; { cancerTiming = derive2 { name="cancerTiming"; version="3.1.8"; sha256="1sfi8q2f5ag7iak0sf9pmqncb89w3gnxdiwjwpivkwhr28ais4mq"; depends=[gplots LearnBayes]; }; candisc = derive2 { name="candisc"; version="0.8-6"; sha256="17bhh3jgaq5hrlwaapwpsgk7f8a3sg2cmrjd1hgfxxx0z30a6icn"; depends=[car heplots]; }; canprot = derive2 { name="canprot"; version="1.1.2"; sha256="1lwlgzy0gxp7jrak838awmqz3w0x7qd51bkyhydb1s61073w77x8"; depends=[CHNOSZ MASS rmarkdown xtable]; }; - cansim = derive2 { name="cansim"; version="0.3.10"; sha256="0cg6fjw7mbzhlbc83s0wv313hhvm2jc9phs6m97nigi5yy05faa2"; depends=[DBI digest dplyr httr jsonlite purrr readr rlang RSQLite rvest stringr tibble xml2]; }; + cansim = derive2 { name="cansim"; version="0.3.11"; sha256="0n1a97dw798gi1jfrkamm5m4p0g33viz2mvpck7hjdal9bn0djmp"; depends=[DBI digest dplyr httr jsonlite purrr readr rlang RSQLite rvest stringr tibble xml2]; }; canvasXpress = derive2 { name="canvasXpress"; version="1.37.4"; sha256="00k7599b1lifbaxv7iqgb48mwd6r25wdkwi6qrzg4jzl41acx4pg"; depends=[htmltools htmlwidgets httr jsonlite]; }; canvasXpress_data = derive2 { name="canvasXpress.data"; version="1.34.2"; sha256="10fdlb1yp5x9533jdammncfrrlxzpcz9as8i0209pwzjywvxby3s"; depends=[]; }; cap = derive2 { name="cap"; version="1.0"; sha256="1pv8hskxjbp589dn7rx80yaa1ld76x1w37bss2fyrys1p3qr78aa"; depends=[MASS multigroup]; }; cape = derive2 { name="cape"; version="3.1.0"; sha256="0r20c5z28jyc5djymwkfzczyi3rlnj20p00jhc4dsywjcp68fx6n"; depends=[abind caTools corpcor doParallel evd foreach here igraph Matrix pheatmap propagate qtl qtl2 qtl2convert R6 RColorBrewer regress shape stringr yaml]; }; caper = derive2 { name="caper"; version="1.0.1"; sha256="0md0sngj7wsv2d4d7fmyyz9qqismk3ps9l3qk1blqz1yi19pq124"; depends=[ape MASS mvtnorm]; }; capitalR = derive2 { name="capitalR"; version="1.3.0"; sha256="08lvncia9mdrnw84zydf1k7336xawiirh2swziqfwx3z1n172n52"; depends=[]; }; - capl = derive2 { name="capl"; version="1.39"; sha256="1883ypq64l8hxjn3l907js7gavl5nsswc46ngrfk6j1xra16fmcx"; depends=[dplyr ggplot2 lubridate magrittr readxl writexl]; }; + capl = derive2 { name="capl"; version="1.42"; sha256="0w0w8m4pcclmmk56cad3f2zdfxd5vh312aja8g0c59s9n1hkdw56"; depends=[dplyr ggplot2 lubridate magrittr readxl stringr writexl]; }; capm = derive2 { name="capm"; version="0.14.0"; sha256="0c3rnc1qd9c4v0jj8ihg6bdhpqvfnpafkqyqkar6fwnlvgw48z83"; depends=[circlize deSolve dplyr FME ggplot2 magrittr sf survey tidyr]; }; capn = derive2 { name="capn"; version="1.0.0"; sha256="14vfk00xyx0az3whmxjpcv1785lf0gx81w7qc54i3wcfp3i22kcr"; depends=[]; }; captioner = derive2 { name="captioner"; version="2.2.3"; sha256="0xg72pmgm84f0v45phfwxpsslhf12nhn1swmrj1yifj7g9sjvybj"; depends=[]; }; captr = derive2 { name="captr"; version="0.3.0"; sha256="13j2nq9hm37g4h5fjdpz7kix0sqajdd7zssjfgil06ixfmnsijkx"; depends=[curl jsonlite]; }; capushe = derive2 { name="capushe"; version="1.1.1"; sha256="1aa76ir1kp67hiz7dr60azyc71yzslshyc640fjh0fpw0sp5kwbc"; depends=[MASS]; }; capwire = derive2 { name="capwire"; version="1.1.4"; sha256="18a3dnbgr55yjdk6pd7agmb48lsiqjpd7fm64dr1si6rpgpl4i9c"; depends=[]; }; - car = derive2 { name="car"; version="3.0-12"; sha256="00kk8l71508f73kyn21is1mx6kjbrzdq3ls94c5ajhiqmvpsd6dq"; depends=[abind carData lme4 maptools MASS mgcv nlme nnet pbkrtest quantreg]; }; + car = derive2 { name="car"; version="3.0-13"; sha256="1ss7kvi5hf9s4b6i7y06zl4iip1w1h8ff4zzf529wk18h3dfhnnk"; depends=[abind carData lme4 maptools MASS mgcv nlme nnet pbkrtest quantreg]; }; carData = derive2 { name="carData"; version="3.0-5"; sha256="06j52rpbqi6fj7chfjwjbwbr6slrbb7i3aygv66gnfiyndcp3rq2"; depends=[]; }; carSurv = derive2 { name="carSurv"; version="1.0.0"; sha256="0wv7lp10i4sdfqyizg77ghblp3pcp7wzhs946sm0wl6w00krav9j"; depends=[corpcor fdrtool mboost Rcpp survival]; }; caracas = derive2 { name="caracas"; version="1.1.2"; sha256="0my74q2l4vncans5s541mphl5pvkd4knxb0i396yf5w6a1vnqwlw"; depends=[magrittr reticulate]; }; @@ -6978,20 +6802,19 @@ in with self; { cardidates = derive2 { name="cardidates"; version="0.4.8"; sha256="1mfd5sgzswhs9rln2bgxx8c54z69xp8l5dfmx7jfh8jl43qkzpjf"; depends=[boot lattice pastecs]; }; care = derive2 { name="care"; version="1.1.11"; sha256="0897v6acxf1myncd507by8zp7aga77pschyix1m4fzgpc6z35vlm"; depends=[corpcor]; }; careless = derive2 { name="careless"; version="1.2.1"; sha256="1zlkzrc9fw926knj6w7flv4q0w29k4aichawvprk94rk1bnrvdz5"; depends=[psych]; }; - caret = derive2 { name="caret"; version="6.0-91"; sha256="1kbx51cf71z2x19a0jflwnhx5jd9wk9q9203kzdxlqw5izdjvmdz"; depends=[e1071 foreach ggplot2 lattice ModelMetrics nlme plyr pROC recipes reshape2 withr]; }; + caret = derive2 { name="caret"; version="6.0-92"; sha256="048mp325ndfl83a8p4dkd1b6zh5bws4gg9kxka5ss8qsj8m4m08x"; depends=[e1071 foreach ggplot2 lattice ModelMetrics nlme plyr pROC recipes reshape2 withr]; }; caretEnsemble = derive2 { name="caretEnsemble"; version="2.0.1"; sha256="127gqd23xjis62irqviihzk80zydrdplwh65zcmd7ng29ih5wnby"; depends=[caret data_table digest ggplot2 gridExtra lattice pbapply plyr]; }; - caretForecast = derive2 { name="caretForecast"; version="0.0.2"; sha256="1vnmwamgj5g7i2285krwi2m7p4jzvi7zk6bzqbj2jsblhbhdmf0i"; depends=[caret forecast magrittr]; }; + caretForecast = derive2 { name="caretForecast"; version="0.0.3"; sha256="0iqnmqlf9a783gaf0vv51jhldbn9q9650vj0cgvbq0qfpqy7qh0d"; depends=[caret forecast magrittr]; }; carfima = derive2 { name="carfima"; version="2.0.2"; sha256="1n68jqn42m54xn7jq8qywrpnvggrcsgvgnlqg6nw0pgiplbkynih"; depends=[DEoptim invgamma mvtnorm pracma truncnorm]; }; - cargo = derive2 { name="cargo"; version="0.1.38"; sha256="0a6pkfgs8nzn65a5nckaak7hjf30k68ghw1n82vh4gf3fjijqkiv"; depends=[]; }; - caribou = derive2 { name="caribou"; version="1.1"; sha256="0ibl3jhvsgjfcva0113z0di9n5n30bs90yz0scckfv1c0pjhn4xd"; depends=[]; }; - caroline = derive2 { name="caroline"; version="0.7.6"; sha256="1afxxbrd7w628l4pxdmvwbs7mbgxlhnfq3nxk2s93w47gn7r9fp7"; depends=[]; }; + cargo = derive2 { name="cargo"; version="0.2.3"; sha256="1ls8gqzdr07rg5nyf9nlkv779xi4a2hc6c4j1yaksp0zn8855afv"; depends=[]; }; + caribou = derive2 { name="caribou"; version="1.1-1"; sha256="1spz5ymqv8k48yg0rrdrs9ylasdif2jwcq2z33gagd6yrim1a3q3"; depends=[]; }; + caroline = derive2 { name="caroline"; version="0.8.0"; sha256="0xhr4g020xyd2jzzpknw6zdh33ihsclwxrkkl4mclybj3xqn9x2q"; depends=[]; }; carpenter = derive2 { name="carpenter"; version="0.2.2"; sha256="13ahhdc6f5ngrhb7slqbxzfs3wswixh0argyr6l46cv4fdkaa80s"; depends=[dplyr lazyeval magrittr pander tibble tidyr]; }; carrier = derive2 { name="carrier"; version="0.1.0"; sha256="0bqnwnnjqjk9q0lxq6kkz9s75ss10lfyyywyyi24m8wppxpw1vqc"; depends=[pryr rlang]; }; cartograflow = derive2 { name="cartograflow"; version="1.0.3"; sha256="09n3pgm70frrx9li1djrwkf4lzcq9c1xjs037vmsb1as0xvd19a1"; depends=[dplyr ggplot2 igraph maptools plotly reshape2 rgeos rlang sf sp]; }; cartogram = derive2 { name="cartogram"; version="0.2.2"; sha256="0kz8hwdr5n8llkylwaixnb66f4pzaxxniz57spxhqizmi6qay7yd"; depends=[packcircles sf]; }; - cartogramR = derive2 { name="cartogramR"; version="1.0-6"; sha256="089bi4lbjh217vpm1v5nb0lr9k4l4rlk8ilnj3mmx5mss11rcahs"; depends=[data_table sf]; }; + cartogramR = derive2 { name="cartogramR"; version="1.0-7"; sha256="02g7ffvvwhln93yyikynpzz4awiba2w2j153g2kfy10iddx5g8m9"; depends=[data_table sf]; }; cartography = derive2 { name="cartography"; version="3.0.1"; sha256="1ginq160ag0sv5xfiqc5a5vizsqvl3maw61yskwhfnjb2lcgk2yg"; depends=[classInt curl png raster Rcpp rgeos sf slippymath sp]; }; - cartools = derive2 { name="cartools"; version="0.1.0"; sha256="0gc5502373f0c2m2rh6awvyfqrg1wx1f341dm2byk9znba887lgs"; depends=[animation devtools dplyr gapminder ggplot2 knitr rlist rmarkdown roxygen2 sde shiny tidyverse usethis]; }; carx = derive2 { name="carx"; version="0.7.1"; sha256="1qyqsj6pfzzqyaj6076zvgcimhl4cll6sxfb6aigm02rwfkq5gvh"; depends=[matrixStats mvtnorm nlme tmvtnorm xts zoo]; }; casabourse = derive2 { name="casabourse"; version="1.3.0"; sha256="18ghw0ir3cm1jl06m3nwrj2wvlyn221lf0ja4h2pm4jn40sn8p3x"; depends=[gsheet httr rvest]; }; cascadess = derive2 { name="cascadess"; version="0.1.0"; sha256="105m5w8rb8bkzmlc5nwb4g0wl8jgvz63jxq665x4jfq0z78qiwgd"; depends=[crayon htmltools magrittr rlang]; }; @@ -7027,10 +6850,10 @@ in with self; { cats = derive2 { name="cats"; version="1.0.2"; sha256="0snc5vrf8qm53yd42gskhnpp6lfgfkldgpjj3jbcry0wpbfc0dv0"; depends=[doParallel dplyr epitools forcats foreach ggplot2 mvtnorm openxlsx plotly purrr tidyr zoo]; }; catseyes = derive2 { name="catseyes"; version="0.2.5"; sha256="11n2kxkqv4hqymkj6lkpcvhq6325q8f5w384xf8zb71jl8vx616l"; depends=[]; }; catsim = derive2 { name="catsim"; version="0.2.3"; sha256="1gz38xrzbray5ciiimkzdass8bhmiqxh6bcngjm5i8dvafk5gf9g"; depends=[Rcpp testthat]; }; - catspec = derive2 { name="catspec"; version="0.97"; sha256="1crry0vg2ijahkq9msbkqknljx6vnx2m88bmy34p9vb170g9dbs1"; depends=[]; }; cattonum = derive2 { name="cattonum"; version="0.0.5"; sha256="11h9nh2i2bmd0b562l5avhwpj9ppnfmzd9nsv94cymhwn5h6nmg6"; depends=[dplyr purrr Rcpp rlang tibble tidyselect]; }; causact = derive2 { name="causact"; version="0.4.1"; sha256="1acg73qaldhccc0k5wc76m4hwgzwyhfsm7721bwk5wns1q5l72vs"; depends=[coda cowplot DiagrammeR dplyr forcats ggplot2 greta htmlwidgets igraph magrittr purrr rlang rstudioapi stringr tidyr]; }; causal_decomp = derive2 { name="causal.decomp"; version="0.0.1"; sha256="08ccdzb5ssqhzkr3z3b8vz762mwflh33s6rrmsb9srvkk661lly2"; depends=[CBPS MASS nnet PSweight spelling SuppDists]; }; + causalDisco = derive2 { name="causalDisco"; version="0.9.1"; sha256="1lni0y76prhvw60m0awwgmfadwlv1ciywlr85sr8ig2vaxf1smh9"; depends=[clipr gtools igraph pcalg RColorBrewer scales]; }; causalOT = derive2 { name="causalOT"; version="0.1"; sha256="0dwrpinlar3jjhia96jw2b336zlpw2z9fac9phk0k8xiwak7d7l2"; depends=[approxOT BH lbfgsb3c loo Matrix matrixStats osqp pbapply R6 Rcpp RcppEigen reticulate RSpectra sandwich]; }; causalPAF = derive2 { name="causalPAF"; version="1.2.4"; sha256="1ild77iiibzqbyxk3j20dydwmbrjf66r7qhd2ip2b3x9qbqq5wmh"; depends=[checkmate dagitty dplyr forestplot ggdag ggplot2 gridExtra magrittr MASS reshape2 rlist]; }; causaldata = derive2 { name="causaldata"; version="0.1.3"; sha256="1v5apihm9005j1kf3p1d28v6jaqx87ryc43kjhwd5mvvm10rmflc"; depends=[tibble]; }; @@ -7043,21 +6866,18 @@ in with self; { cba = derive2 { name="cba"; version="0.2-21"; sha256="0j2hbp0xlfp28gqgnkcvmb4yp1kc5m2bp5x7pr4m1pz2b1s7h7m6"; depends=[proxy]; }; cbanalysis = derive2 { name="cbanalysis"; version="0.2.0"; sha256="0h0h8krlb6rckjpcw0jbbr8pcy3jm0cszimbm56l0ca668kiix06"; depends=[]; }; cbinom = derive2 { name="cbinom"; version="1.6"; sha256="1vi2kjlss4fmra1h8r6xgk4y66gzpdp61hcyzby2rqji93sib195"; depends=[Rcpp]; }; - cbird = derive2 { name="cbird"; version="1.0"; sha256="0kzylylk46swd7f0j6kjyrcs3plbx9799q9kb8hjxmgh0qcjk2p6"; depends=[]; }; - cblasr = derive2 { name="cblasr"; version="1.0.0"; sha256="1bz8d4124qpja4bvzn6k1swi89cfyrcpwg2nwyj4r8y0m1hbpc71"; depends=[Rcpp]; }; cbq = derive2 { name="cbq"; version="0.2.0.2"; sha256="0vg1mhk147pib61v4im3ikc551c2nmmcfah9fjw9c978gf81g32n"; depends=[BH Formula Rcpp RcppEigen rstan rstantools StanHeaders]; }; cbsodataR = derive2 { name="cbsodataR"; version="0.5.1"; sha256="02dalankaa4lfv9r7bc9cphmwb0mq6an7bs44rihipj8dsjd0v9y"; depends=[jsonlite whisker]; }; - ccChooser = derive2 { name="ccChooser"; version="0.2.6"; sha256="1vgp4zhg46hcf9ma2cmwgnfrqkmq1arh0ahyzjpfk3817vh7disc"; depends=[cluster]; }; ccRemover = derive2 { name="ccRemover"; version="1.0.4"; sha256="1npd0vx2hyg7qbwd650987i49v5cxr6i1hlj5rw6fxc0b808s596"; depends=[]; }; ccTensor = derive2 { name="ccTensor"; version="1.0.2"; sha256="1r1cqx5kn12xkczpw7f8ij16csnnfy3gjf3kcgr95f070lhd1qna"; depends=[fields igraph MASS rTensor]; }; ccaPP = derive2 { name="ccaPP"; version="0.3.3"; sha256="1p08gih67950khfkzhiksa8qw2f9mrmyqiiapsjpv6zc5g0lchhk"; depends=[pcaPP Rcpp RcppArmadillo robustbase]; }; ccboost = derive2 { name="ccboost"; version="0.1-1.3"; sha256="165v44xghm9xgc9ad5hadvq81mshb3y4rzpi65zc93ggr4jsdfxr"; depends=[mpath xgboost]; }; - cccd = derive2 { name="cccd"; version="1.5"; sha256="0m364zsrgr7mh1yhl2lqxpaf71gzq3y3pp9qgnj4spiy4iadyy7i"; depends=[deldir FNN igraph proxy]; }; + cccd = derive2 { name="cccd"; version="1.6"; sha256="0cxh19jqappc6zq9nz3m40ybdmsp12mf7yvflsz96wks3ly2ld4y"; depends=[deldir FNN igraph proxy]; }; cccp = derive2 { name="cccp"; version="0.2-7"; sha256="080rr1nsj465458yfawbcfgvdng42gzbzjzblvkdm5c1hkwnn7ij"; depends=[Rcpp RcppArmadillo]; }; cccrm = derive2 { name="cccrm"; version="2.0.3"; sha256="0kp0i83xm4i4fwkkizacpdgdjsg9p9gr1q7ibdsgy8qwdm50sz9z"; depends=[Deriv dplyr nlme tidyselect]; }; ccda = derive2 { name="ccda"; version="1.1.1"; sha256="1kka4vmhpcnl4skdmijzsxrfj6dgax6hhlxvp7gkqlfaazq8pzf0"; depends=[MASS]; }; ccdf = derive2 { name="ccdf"; version="1.1.4"; sha256="1kab0qa731w5hhnpdqhf5jbyyq66xjx1xyxnkzwc0qy75cgyc03i"; depends=[CompQuadForm cowplot doParallel foreach ggplot2 matrixStats pbapply randomForest RcppNumerical rpart statmod survey viridisLite]; }; - ccdrAlgorithm = derive2 { name="ccdrAlgorithm"; version="0.0.5"; sha256="171k70p4qyasr385ma3cvcga2b4nbz2dfry78wqx5yb1aa6wwcyc"; depends=[Rcpp sparsebnUtils]; }; + ccdrAlgorithm = derive2 { name="ccdrAlgorithm"; version="0.0.6"; sha256="0pwb32sw0h03fnp15zm81znhqcxszzqk288vcbi455639jd2npp5"; depends=[Rcpp sparsebnUtils]; }; cchs = derive2 { name="cchs"; version="0.4.2"; sha256="18zk50g7rw8cb09fczpcdgzjl1b06rgf6lwy99sg7nq4scnzgzm8"; depends=[survival]; }; cchsflow = derive2 { name="cchsflow"; version="2.0.0"; sha256="1r8m072f6idmmirwgr71llcka6f254jzhcs53yx6fxzncp5l2g6n"; depends=[dplyr haven magrittr sjlabelled stringr]; }; ccid = derive2 { name="ccid"; version="1.2.0"; sha256="0cmkkllcny53dayl74wqhphjznwj7nw7hvaj1fn6mlp6338h3rp8"; depends=[gdata GeneNet hdbinseg IDetect]; }; @@ -7067,6 +6887,7 @@ in with self; { ccmm = derive2 { name="ccmm"; version="1.0"; sha256="0855nr74xxpy7in2vrw15g8pv7nm1374irc1c5hikr5hadk5pf8v"; depends=[MASS]; }; ccoptimalmatch = derive2 { name="ccoptimalmatch"; version="0.1.0"; sha256="0a5a036iahzag5rwcrjnf7xvvyfgjcx4xdsy1xzrxxndvkjifwqw"; depends=[dplyr rlang]; }; ccostr = derive2 { name="ccostr"; version="0.1.0"; sha256="0yfmj8v7ip595v87w9dmlzl5rih2j0lsapswh9b9vvc20wnk48ld"; depends=[data_table dplyr forcats ggplot2 knitr msm Rdpack rlang survival tibble]; }; + ccpsyc = derive2 { name="ccpsyc"; version="0.2.6"; sha256="131ngns5nfkfp0wwf3hl0mhil7n040ss9ppshz4607rrk1ar9isf"; depends=[dplyr lavaan magrittr MCMCpack psych RcppAlgos readr rlang tibble tidyr ufs xlsx]; }; ccrs = derive2 { name="ccrs"; version="0.1.0"; sha256="1nyw4ip9v7y6yfbfdz3bwhy4r6hpp1hiip3ycldxlkl9wrxkxgrw"; depends=[cds colorspace dplyr limSolve lsbclust msm]; }; ccrtm = derive2 { name="ccrtm"; version="0.1.6"; sha256="1r2jmqb8wwmxr13xgzi5qfig96pclm0nmxm0glvwg0i72hvvqlbv"; depends=[expint pracma Rcpp testthat]; }; ccss = derive2 { name="ccss"; version="1.0"; sha256="0m2facn6kwxrjxg9a8z0pjnhp0rkgw6nxj6sac93ig24zygx4380"; depends=[]; }; @@ -7074,14 +6895,11 @@ in with self; { cd = derive2 { name="cd"; version="0.1.0"; sha256="1zzhkrsidny5h6jvbip2a4i4klqdgw7s1w8h8hkc3mpbxjfr615r"; depends=[]; }; cdata = derive2 { name="cdata"; version="1.2.0"; sha256="0n1abljjvbmbgi9i8k7vbma92r21w50rz6jys39gq62hy3qr6vzl"; depends=[rqdatatable rquery wrapr]; }; cdb = derive2 { name="cdb"; version="0.0.1"; sha256="1rdb4lacjcw67apdyiv7cl1xvv9d1mrzck1qk605n6794k7wf2ys"; depends=[bitops]; }; - cdcatR = derive2 { name="cdcatR"; version="1.0.5"; sha256="1gh39xh4060nni9p0gb5c20xkx5la47l3qi4bw036n1nc61s6nk4"; depends=[cdmTools cowplot doSNOW foreach GDINA ggplot2 NPCD]; }; cdcfluview = derive2 { name="cdcfluview"; version="0.9.4"; sha256="1b8x66vf34hh8r1fdk16kwcmrzw34z64fvaax7ypiihc9xf1askp"; depends=[dplyr httr jsonlite MMWRweek progress purrr readr sf tibble units xml2]; }; cdcsis = derive2 { name="cdcsis"; version="2.0.3"; sha256="0hv52valyig3zzywm3058c5nxb2n7y3j2vfibxdbfg8414wwapd9"; depends=[ks mvtnorm Rcpp]; }; cder = derive2 { name="cder"; version="0.2-2"; sha256="0aw2c170sqx2y4iz16avqijahwxlsaz590mxvsx4bicfd8nrcynk"; depends=[curl dplyr glue lubridate readr rlang stringr tibble]; }; - cdfquantreg = derive2 { name="cdfquantreg"; version="1.3.0"; sha256="0dl20a447bdvwgkhkgh2h8ngsvblxidyrsmz5ggb9dhy0msg1hgr"; depends=[Formula MASS pracma]; }; cdlTools = derive2 { name="cdlTools"; version="0.15"; sha256="1p5d48v6nwlrgqqi0sg98zfhiycjcha6g12a7515xrvp6f5p28jn"; depends=[httr raster]; }; cdlei = derive2 { name="cdlei"; version="1.0"; sha256="1zsgryrwr1nqhcyizrh67lm953b87ih9l4rvc6i59s4vg2ph1ph1"; depends=[]; }; - cdmTools = derive2 { name="cdmTools"; version="1.0.1"; sha256="0889vc7glb4jfkwaf5jr3kqkyx6qrpjaplgpfdis2bd7xv46y47i"; depends=[combinat GDINA ggplot2 GPArotation NPCD psych sirt]; }; cdom = derive2 { name="cdom"; version="0.1.0"; sha256="00xqqqhskjlkz8ii7kqyabxk8995w7g9jiz1isyqjpwg8nsa3x28"; depends=[broom ggplot2 minpack_lm tidyr]; }; cdparcoord = derive2 { name="cdparcoord"; version="1.0.1"; sha256="0ym2ypw4bsvmx9q4vskrq4pdd92y47vs8pay8san40rgzwqr2agb"; depends=[data_table freqparcoord partools plotly]; }; cdrcR = derive2 { name="cdrcR"; version="0.0.1"; sha256="1z6z27rnqg07i5j09q0xwy9bvwci1vc2vijp6r733diivyhcraiv"; depends=[dplyr httr jsonlite magrittr purrr rjson rlang rlist sf tidyr tidyselect urltools]; }; @@ -7092,13 +6910,12 @@ in with self; { ceg = derive2 { name="ceg"; version="0.1.0"; sha256="01la7kv0a3inc9vy5x010ysicfiv404bqfgs8csvqixviap9rd74"; depends=[graph Rgraphviz]; }; celestial = derive2 { name="celestial"; version="1.4.6"; sha256="1gls0qvr8mxz79lsmk76v253f747g0cqys8p8wjmpijs8r0pyr4z"; depends=[NISTunits pracma RANN]; }; cellOrigins = derive2 { name="cellOrigins"; version="0.1.3"; sha256="0nxhyz9bz0f598wpr10hm1d0zx83450xf9jkrl279v46x8sx36n4"; depends=[iterpc]; }; - cellVolumeDist = derive2 { name="cellVolumeDist"; version="1.3"; sha256="00hq3nbfbnmg2lhrqd0glkh5ld50fv54ll3q6v875d1lgs44sln1"; depends=[gplots minpack_lm]; }; + cellVolumeDist = derive2 { name="cellVolumeDist"; version="1.4"; sha256="1pbssq8zf1cmihs3fg5zgb3k876magxl84jld6vcfvvp76sxhr7l"; depends=[gplots minpack_lm]; }; cellWise = derive2 { name="cellWise"; version="2.2.6"; sha256="06j2m24q5zyickxi769d1r2ndlcq8hrmp8xb5795ppxnc6hbq418"; depends=[ggplot2 gridExtra matrixStats Rcpp RcppArmadillo reshape2 robustbase rrcov scales svd]; }; cellranger = derive2 { name="cellranger"; version="1.1.0"; sha256="16fgi3annn34c3cxi0pxf62mmmmxi21hp0zzlv7bkfsjqy4g4f2x"; depends=[rematch tibble]; }; celltrackR = derive2 { name="celltrackR"; version="1.1.0"; sha256="08hbgpwcpf7v8l7qmszhjh0w4f4zjcizrdsxksihxpwdi9r4al3w"; depends=[ellipse pracma]; }; cem = derive2 { name="cem"; version="1.1.29"; sha256="1awb3y1r18mkvwl0rr41a8zcvbwg8b00k010096asz3qywzaxiql"; depends=[combinat lattice MatchIt nlme randomForest]; }; cenGAM = derive2 { name="cenGAM"; version="0.5.3"; sha256="0qic2g2bq24k9jimxdk8g7bsmi4br2r6159ipdhh5ym81ji3sf5p"; depends=[mgcv]; }; - cenROC = derive2 { name="cenROC"; version="1.2.0"; sha256="07ja3yyqmb9cs76if32aksgcwki3y6nh13lvn9j0bdgbgqx65f3r"; depends=[condSURV icenReg Rcpp RcppEigen survival]; }; censCov = derive2 { name="censCov"; version="1.0-0"; sha256="0i9vmyi12f1m5xnrl4cxk3z9qv7ymzxsyf4gbnpg1ph63yfnhv3g"; depends=[survival]; }; censNID = derive2 { name="censNID"; version="0-0-1"; sha256="1ij5ci6nkqf0rq51vyh4jw5sr3y46yndfkjmwl78ppdj66axxir5"; depends=[]; }; censReg = derive2 { name="censReg"; version="0.5-34"; sha256="025r19w40bc1vzz45sz1zywsfwp9p157mmlr4k78mvp6c096idwl"; depends=[glmmML maxLik miscTools plm sandwich]; }; @@ -7128,7 +6945,7 @@ in with self; { cfda = derive2 { name="cfda"; version="0.9.12"; sha256="0xhw3vkvgzg1gg7zvnzp1xpja82791sgmclb0pbl7lcx2fbqigcx"; depends=[diagram fda ggplot2 mgcv msm pbapply]; }; cfdecomp = derive2 { name="cfdecomp"; version="0.4.0"; sha256="0g61gpihk5kbbrqzn15fqjv3bawsq1vq3sdssbzs5j96afmf2aq8"; depends=[]; }; cffdrs = derive2 { name="cffdrs"; version="1.8.18"; sha256="15bl1sfm2yz897b5w0x0kvyf2z3rx32n436gsnsx5gd32v5v18w1"; depends=[data_table doParallel foreach geosphere raster rgdal]; }; - cffr = derive2 { name="cffr"; version="0.2.1"; sha256="0xnql538s5q8vdky343knkld7b400z22mx7znib17an7jjd4wz6v"; depends=[crayon desc jsonlite jsonvalidate yaml]; }; + cffr = derive2 { name="cffr"; version="0.2.2"; sha256="14s5xia0j4zb3904z95686rsmsf17rfnkz5hpss8hb7ixjcgbydn"; depends=[crayon desc jsonlite jsonvalidate yaml]; }; cfid = derive2 { name="cfid"; version="0.1.2"; sha256="0hy2vq3izj4938sgzmgpp4m9d49hpiqh9jd1wjf5g54x3v1yzy89"; depends=[]; }; cfma = derive2 { name="cfma"; version="1.0"; sha256="006z5g3rqpg44jqdf6ivyxr47sxm5cd9cqhayfi8qk73xx5w4lv9"; depends=[]; }; cfmortality = derive2 { name="cfmortality"; version="0.3.0"; sha256="0dgwv89fzylznc6jr41ixzfs1gfs3np4gf46bk6pcd09l1kbx3lc"; depends=[]; }; @@ -7137,7 +6954,6 @@ in with self; { cgAUC = derive2 { name="cgAUC"; version="1.2.1"; sha256="172f9rkfhv4xzwpw8izsnsdbcw9p3hvxhh0fd8hzlkil7vskr3k8"; depends=[Rcpp]; }; cgal4h = derive2 { name="cgal4h"; version="0.1.0"; sha256="0ghcwjfqlhqysnl8mgz6zp7dyqh8pvnpvphwjwk6zqi24n3nhac2"; depends=[]; }; cgam = derive2 { name="cgam"; version="1.17"; sha256="04ncxvijx8nym5m8xlswpargi34mvi28zxfsrl6widl7ymxi8dff"; depends=[coneproj lme4 Matrix svDialogs]; }; - cgdsr = derive2 { name="cgdsr"; version="1.3.0"; sha256="07yc819hkabpzzh0g0cbqza6bcfy67b2marrzz1lj97f9iba78ja"; depends=[httr R_methodsS3 R_oo]; }; cghRA = derive2 { name="cghRA"; version="1.6.0"; sha256="16dlw27s8wckc75xcwc2g74pw6bar0y0ii3h53w1hql05d4f7sb8"; depends=[DNAcopy Rgb]; }; cglasso = derive2 { name="cglasso"; version="2.0.4"; sha256="0rdxmvndq97jj18sxabb5ggfqkdjbrgzsi4byw7w3jns9w61wbvz"; depends=[igraph MASS]; }; cglm = derive2 { name="cglm"; version="1.1"; sha256="1r3wrds5lbirzzqsi12prwykxa5361jb95pq7j95nlp6y8kcb94j"; depends=[data_table nleqslv Rcpp RcppArmadillo]; }; @@ -7159,24 +6975,22 @@ in with self; { changepoints = derive2 { name="changepoints"; version="1.0.0"; sha256="0ilzanfinzkadflknr9b4l9s1y2yl6vs4h5z1zi6kp9qps2asd10"; depends=[data_tree gglasso glmnet ks MASS Rcpp RcppArmadillo]; }; changepointsHD = derive2 { name="changepointsHD"; version="0.3.3"; sha256="1wdhmkg21kb5jd95a0aqqp2qgdkndc69rbdxjf792gq8f1rigarh"; depends=[Rcpp RcppArmadillo]; }; changepointsVar = derive2 { name="changepointsVar"; version="0.1.0"; sha256="0kj9m9jik1dm5fx4c4hb559f5irpl1mvxk4wwajd5577a2fdqxb5"; depends=[lars MASS]; }; - changer = derive2 { name="changer"; version="0.0.4-1"; sha256="0d5rh5a7ja5n390ikys939j8wc8kyvrv7pddpnzj8vmq7a90zzkd"; depends=[available devtools git2r]; }; + changer = derive2 { name="changer"; version="0.0.5"; sha256="02pn96gx98h00kl08zfza9mdxq1ra6f9l5mgfnrvyrjhz3a5d2kh"; depends=[available devtools git2r]; }; chantrics = derive2 { name="chantrics"; version="1.0.0"; sha256="0123mbdr4bkkp8w9w15bg9qxkbpd6nyp602fw690zsy1dyimm78k"; depends=[AER chandwich lmtest progress purrr rlang sandwich]; }; charlatan = derive2 { name="charlatan"; version="0.4.0"; sha256="0hrc4kdympi05j6gx0x6vy4jb1mvxxi7pcrnpzcp8vxvd6r3wjmq"; depends=[R6 tibble whisker]; }; chartql = derive2 { name="chartql"; version="0.1.0"; sha256="108csn7q8qrjhiss54f5bliv3av7psq7kfryspajbdb6wm9ciz3p"; depends=[ggplot2 stringr]; }; cheatsheet = derive2 { name="cheatsheet"; version="0.1.0"; sha256="1vnkpmf2iahgj1j6f5jvjiamvsgsamy4kdnskc70s4584d5m00p7"; depends=[cli crayon fs git2r magrittr purrr rappdirs rstudioapi stringr]; }; - cheb = derive2 { name="cheb"; version="0.3"; sha256="0vqkdx7i40w493vr7xywjypr398rjzdk5g410m1yi95cy1nk4mc7"; depends=[]; }; - chebpol = derive2 { name="chebpol"; version="2.1-2"; sha256="126cgqnl9jy332q0ywg9dr11d4q1aichwwakb1xcrxrqw2j26zzi"; depends=[geometry]; }; checkLuhn = derive2 { name="checkLuhn"; version="1.1.0"; sha256="1s1ix5n98bcbzcvrz5h19sk9pchdvrhpy3ppmw96ys8vylzm58mv"; depends=[dplyr stringr]; }; checkarg = derive2 { name="checkarg"; version="0.1.0"; sha256="0rkdjs2c4yx9laqgayxz57bwxhwgdh6ndrr4i3b1kh31lcmk1xc6"; depends=[]; }; checkdown = derive2 { name="checkdown"; version="0.0.7"; sha256="1bjij565vss2x8xbgq5qxx1d1snfw9wnphj0jhbm6vxxh2hg6g46"; depends=[knitr markdown]; }; - checkmate = derive2 { name="checkmate"; version="2.0.0"; sha256="193gkifr9spp0x0rwnjq1spdhjkfkh4mv27iklskcj604075phhd"; depends=[backports]; }; + checkmate = derive2 { name="checkmate"; version="2.1.0"; sha256="1ii11lypfz8qwswaiagaxnfq6wqkg3cq4j7k9q40sdd0cd8xv15p"; depends=[backports]; }; checkpoint = derive2 { name="checkpoint"; version="1.0.2"; sha256="1987vn13b5j914vkzwbn7q1138b0xsjs55x5b2090kjk6kc900x8"; depends=[jsonlite pkgdepends withr yaml]; }; checkr = derive2 { name="checkr"; version="0.5.0"; sha256="14hkpfbw5ibdwz2jygir2f2bb2qgrj62gn3449n4dif31nswaj2f"; depends=[err]; }; cheddar = derive2 { name="cheddar"; version="0.1-636"; sha256="1lf39v0p583jgiyb02vx0rgbwzmmhgkfpwjib2fzh9ffbs8bfk66"; depends=[]; }; cheem = derive2 { name="cheem"; version="0.2.0"; sha256="0l8mbhl8jhwsikhy2nakdp21zz9k71fanhznjcqlpy7m7aqagp7i"; depends=[data_table DT ggplot2 magrittr plotly Rcpp shiny shinycssloaders shinythemes spinifex]; }; cheese = derive2 { name="cheese"; version="0.1.1"; sha256="1r4n9li33am0bsyl57kzg1m9g4w0pzbw6garcdp3qk7lwqxy2y26"; depends=[dplyr forcats kableExtra knitr magrittr purrr rlang stringr tibble tidyr tidyselect]; }; chemCal = derive2 { name="chemCal"; version="0.2.3"; sha256="0f0d0ljym745scnfdx0n0jp86g4r51gylcab3h7ykpaizgpah24r"; depends=[]; }; - chemmodlab = derive2 { name="chemmodlab"; version="1.1.0"; sha256="0b7qwysqzvhhyxdvvr6lb65aqwhrh1a2wk3p5xplnfjxpy9gh7lm"; depends=[caret class e1071 elasticnet fingerprint lars MASS MSQC nnet pls pROC randomForest rcdk rpart tree]; }; + chemmodlab = derive2 { name="chemmodlab"; version="2.0.0"; sha256="01af0j24vymxiqahwhcf4kp0x603yllvlgcxnybsi2wnzm71swk7"; depends=[caret class e1071 elasticnet KernSmooth lars MASS MSQC nnet pls pROC randomForest rpart tree]; }; chemometrics = derive2 { name="chemometrics"; version="1.4.2"; sha256="0shqns0n964pfwnd0q5sadglrlpgs4g5fbv45fsj9p37l4pq61dp"; depends=[class e1071 lars MASS mclust nnet pcaPP pls robustbase rpart som]; }; cherry = derive2 { name="cherry"; version="0.6-14"; sha256="03ipvd2ldzk7xsalkgcx0cyp9cp9b8qqjvz8nl0am412j3z9i5wg"; depends=[bitops hommel lpSolve]; }; cherryblossom = derive2 { name="cherryblossom"; version="0.1.0"; sha256="1fn0xi65y0w1gmyrjlh8lb2is34r2dc5bym0ynrgjv8h595nzhwp"; depends=[]; }; @@ -7188,7 +7002,6 @@ in with self; { chickn = derive2 { name="chickn"; version="1.2.3"; sha256="1d3xl2pigan6vb29nk2ks04dsl5vy16cv9z7miskmhcqcx2wm1qb"; depends=[bigstatsr doParallel doRNG foreach MASS mvnfast nloptr pracma Rcpp RcppArmadillo RcppParallel Rdpack rmio zipfR]; }; childdevdata = derive2 { name="childdevdata"; version="1.1.0"; sha256="016x6xhqq1mfqlj9m5qv63k639xnqnrf5h6rdcyaa8sxn7nv34zm"; depends=[]; }; childesr = derive2 { name="childesr"; version="0.2.3"; sha256="1a58s0zph4mfmh9sdfbv7yaa20lx5gi0mca0ikzarfwxjl5knp39"; depends=[DBI dbplyr dplyr jsonlite magrittr purrr RMySQL]; }; - childhoodmortality = derive2 { name="childhoodmortality"; version="0.3.0"; sha256="1ixd10jyzgr1ssnjas35kngpsqyjzl73wwpvcspv06cn12sv2b8d"; depends=[dplyr matrixStats plyr]; }; childsds = derive2 { name="childsds"; version="0.8.0"; sha256="1vv02kbw17b8zva2yc1qgi750z9yhyfv5xbig29dhyzvj8k00yvb"; depends=[boot class dplyr gamlss gamlss_dist magrittr purrr purrrlyr reshape2 tibble tidyr VGAM]; }; chilemapas = derive2 { name="chilemapas"; version="0.2"; sha256="0s2f5bhr7d64rlk4x7cv6zjrbnf5g86lgg026svgrdxvs1vqa4as"; depends=[dplyr magrittr rlang rmapshaper sf stringr]; }; chillR = derive2 { name="chillR"; version="0.72.7"; sha256="0wjxvrinl2zshgq15pm2l4ibl3y7aihg767sn8awvcdywl0dfkxx"; depends=[assertthat dplyr fields GenSA ggplot2 httr jsonlite Kendall metR patchwork pls plyr R_utils raster Rcpp RCurl readxl reshape2 rlang RMAWGEN scales sp stringr tidyr XML]; }; @@ -7198,11 +7011,12 @@ in with self; { chisq_posthoc_test = derive2 { name="chisq.posthoc.test"; version="0.1.2"; sha256="0lvj3jqhaj1ijjpzvpq3fn3a1y3fgv69pxh91j6k958pn6vmp40i"; depends=[]; }; chisquare = derive2 { name="chisquare"; version="0.3"; sha256="1cfarwvzz20f7sxbjhlxzrkg2p9vf51v4m50j96vwdlz4ng4cr5m"; depends=[gt]; }; chk = derive2 { name="chk"; version="0.8.0"; sha256="10gcv00mgi88vgxr9jrs0ar67crmdcdi4m9g86cm6pg3ly0v097y"; depends=[lifecycle rlang]; }; + chkptstanr = derive2 { name="chkptstanr"; version="0.1.1"; sha256="0p0pzpzyg3sw4gnvzdx34f96yxidpykq49v5xlhnrsnpjzajjfs3"; depends=[abind brms Rdpack rstan]; }; chlorpromazineR = derive2 { name="chlorpromazineR"; version="0.2.0"; sha256="0w7v6xk3vyf9dyf9bh5v9516v78yhcdvy7h1140pg2yw8xmfyr0r"; depends=[]; }; chngpt = derive2 { name="chngpt"; version="2022.4-6"; sha256="1jfmbrzafid6xyf658qwwvfxxdzcwj0dwplgn9qclz1rwm634ky6"; depends=[boot kyotil lme4 MASS RhpcBLASctl survival]; }; choiceDes = derive2 { name="choiceDes"; version="0.9-3"; sha256="1nsc8p4svfc6z7ckffl24c0acnaxi6cnpz7jq03vzn6spxvpjcmw"; depends=[AlgDesign]; }; cholera = derive2 { name="cholera"; version="0.7.9"; sha256="1d2z41f9vh79dk2ic2rzj4g6sdccm4vfimwq0wc8j2s7bad1gv1g"; depends=[deldir ggplot2 HistData igraph KernSmooth pracma raster RColorBrewer sp threejs TSP viridisLite]; }; - choplump = derive2 { name="choplump"; version="1.0-0.4"; sha256="0fn6m3n81jb7wjdji4v04m53gakjfsj3ksm546xxz5zm7prk237s"; depends=[]; }; + choplump = derive2 { name="choplump"; version="1.1.1"; sha256="14sssw57jfvff1s9h7pfgazg50xmblj0c2cljcmbdy19ynlkr43g"; depends=[]; }; chopthin = derive2 { name="chopthin"; version="0.2.2"; sha256="1ixmgq6igd2ji88qba7scny1j8rrizcf76dk4ymk3hah5dln97fz"; depends=[Rcpp]; }; chords = derive2 { name="chords"; version="0.95.4"; sha256="1v6zvl1mv9fyf6hx1fpbj3i7s893n4y1w4j9rw1arps006qz2jqn"; depends=[MASS Matrix]; }; choroplethr = derive2 { name="choroplethr"; version="3.7.0"; sha256="06nj88vhwrjyqr0smvkx8cbcjvl1sjfc3al8qna3l8nxwj7vyplk"; depends=[acs dplyr ggmap ggplot2 gridExtra Hmisc R6 RgoogleMaps rvest stringr tidycensus tidyr tigris WDI xml2]; }; @@ -7210,8 +7024,10 @@ in with self; { choroplethrMaps = derive2 { name="choroplethrMaps"; version="1.0.1"; sha256="0ghqb2d1h0qkbcsll6ck2qk5sfvdwsrlh3phlbsjbak30832j7fr"; depends=[]; }; chorrrds = derive2 { name="chorrrds"; version="0.1.9.5"; sha256="045m3hqfk63zlb44s07wflaawzn030fg0nqck4w852m52a0r1z5v"; depends=[dplyr forcats magrittr purrr rlang rvest stringr xml2]; }; christmas = derive2 { name="christmas"; version="1.1.1"; sha256="0lxz71vbfqngkn4mg0c74ainww3vbzn8f4s5kmnw5bsd2mmwism7"; depends=[animation]; }; + chromConverter = derive2 { name="chromConverter"; version="0.1.0"; sha256="04bn8sf3zpv85bgq2gjwz6fzs6lpmmckbf7bwwd7yr39ns6rs1g6"; depends=[reticulate]; }; chromer = derive2 { name="chromer"; version="0.1"; sha256="0fzl2ahvzyylrh4247w9yjmwib42q96iyhdlldchj97sld66c817"; depends=[data_table dplyr httr]; }; chromoMap = derive2 { name="chromoMap"; version="4.1.1"; sha256="1067h5d6jdbm811n7ayikhqfbcqmxbz5jgp05vf1sbln7qgn9l43"; depends=[htmltools htmlwidgets]; }; + chromote = derive2 { name="chromote"; version="0.1.0"; sha256="0v50czg5w75l54gf2w6zp84hhi3khik51hvl75gwpgajjcs1rp1y"; depends=[curl fastmap jsonlite later magrittr processx promises R6 rlang websocket]; }; chromseq = derive2 { name="chromseq"; version="0.1.3"; sha256="0m9dnm50iw176ffn6syd3538hxmjhkrxfzaf13210q100wk0lgz2"; depends=[]; }; chron = derive2 { name="chron"; version="2.3-56"; sha256="0p9zz96jfyf139924hdwkzhr8knkjvx6547ac53rknm3a6wwngl6"; depends=[]; }; chronicle = derive2 { name="chronicle"; version="0.3"; sha256="0yfrxr93fbxgpxjs1gb56pdx1kk4nn9xvy2csgl1rhzrgbl343m3"; depends=[data_table dplyr DT dygraphs ggplot2 glue knitr magrittr plotly prettydoc purrr readr rlang rmarkdown rmdformats scales skimr viridis zoo]; }; @@ -7228,29 +7044,25 @@ in with self; { cifti = derive2 { name="cifti"; version="0.4.5"; sha256="092334lcpkzv52bg53hzx64dnrwq67f3p9fzwchmafx1l46xrqx9"; depends=[gifti oro_nifti R_utils xml2]; }; ciftiTools = derive2 { name="ciftiTools"; version="0.8.0"; sha256="0riladbcjgx4xgjxd1hbiaaghpgr5qn7lvgrpky4xhng8qycckp7"; depends=[fields gifti oro_nifti RColorBrewer rgl RNifti viridisLite xml2]; }; cimir = derive2 { name="cimir"; version="0.4-1"; sha256="0r8fmvqcihxsj0w1g2xm02wwqcgrwadbl5n1dzksw8zpcjfw7fkn"; depends=[curl dplyr glue jsonlite purrr rlang stringr tidyr]; }; - cinaR = derive2 { name="cinaR"; version="0.2.1"; sha256="0i0fkh5j494fy9zy0p67ashqsa7vw3jhf092sw3nfyvmb7k4spnj"; depends=[ChIPseeker DESeq2 dplyr edgeR fgsea GenomicRanges ggplot2 ggrepel limma pheatmap preprocessCore RColorBrewer sva TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene writexl]; }; cinaRgenesets = derive2 { name="cinaRgenesets"; version="0.1.1"; sha256="0pz3iw559d8rsxmnwd1cqcpv8qnnh9bfvc9ydzwznx8jczbldls8"; depends=[]; }; cinterpolate = derive2 { name="cinterpolate"; version="1.0.0"; sha256="1aw6hs41xin2hhgmi4pr5510v4sn6x735lachpc5gpbxch5h3f82"; depends=[]; }; cir = derive2 { name="cir"; version="2.2.0"; sha256="0wfv7iv1z9xcp0icjr9agrl7j6z2z3d1wp85sd5dyzp9gbfjsinm"; depends=[]; }; circacompare = derive2 { name="circacompare"; version="0.1.1"; sha256="15vpnh20wni2wmp86xql9737kbxbi28s9a4pi3rihr1w5mcgqfaj"; depends=[ggplot2]; }; circle = derive2 { name="circle"; version="0.7.1"; sha256="04gb3575sdlhh5z6bkam8sj2wg9npgq0b9572qm2dlrspmjqvcd4"; depends=[cli httr jsonlite]; }; circletyper = derive2 { name="circletyper"; version="1.0.1"; sha256="11jqcz0faxd7g50nmxa58c3gyaysvzcrgh6yalpxapz06md17wq5"; depends=[shiny]; }; - circlize = derive2 { name="circlize"; version="0.4.14"; sha256="0b0yqjmbj1s1jg7y6cgyawadlfv0i6xrls8a4qy9qs7hz8zrpvb1"; depends=[colorspace GlobalOptions shape]; }; - circular = derive2 { name="circular"; version="0.4-94"; sha256="0wanbd6n7g1avvyc7pm0lnkwg868dix2byiz4wm6vmxzm0y47fmr"; depends=[boot mvtnorm]; }; - circularEV = derive2 { name="circularEV"; version="0.1.0"; sha256="03qr0sfiqpz0zvm9xihwi07snhxkj5h6bcsxhrsr89xyb70wqwg0"; depends=[circular doParallel foreach ggplot2 mgcv NPCirc]; }; + circlize = derive2 { name="circlize"; version="0.4.15"; sha256="1iswb7dy08as3pbzxvhx5qlsbnwvp79nwg8m158nfz7y2d9xa0nn"; depends=[colorspace GlobalOptions shape]; }; + circular = derive2 { name="circular"; version="0.4-95"; sha256="1qmwj1pf37lc2s5r83y7nqckscznqhbsv66bdfgfbby7x4qkwga8"; depends=[boot mvtnorm]; }; + circularEV = derive2 { name="circularEV"; version="0.1.1"; sha256="0g499mn8knkfspk3wdgn8r9v4hpr6gy8wjwf0zrgf0j05xap6g7a"; depends=[circular doParallel foreach ggplot2 mgcv NPCirc]; }; circumplex = derive2 { name="circumplex"; version="0.3.8"; sha256="1c6h06ccsql3yy3304b537wl40wd8f0sgj3gwi376irfz5zq227j"; depends=[assertthat boot dplyr ggforce ggplot2 htmlTable magrittr purrr Rcpp RcppArmadillo rlang tibble tidyr]; }; cit = derive2 { name="cit"; version="2.3.1"; sha256="1i1179d0rjnmrlwh031dxmvwp2w6k1c9fj5g3cfmzjk4xxb2bjha"; depends=[]; }; citation = derive2 { name="citation"; version="0.6.2"; sha256="15j2rxjfyfzkl3hrbfk9qb5zn39qgk6lyy0qzfx1nv083gx3xllh"; depends=[desc jsonlite withr yaml]; }; citationchaser = derive2 { name="citationchaser"; version="0.0.4"; sha256="11ilh8fpqvljzriwwkzmw5idxff82spyv4b36lsl1s0lfbgjis69"; depends=[data_table dplyr httr jsonlite maditr MESS networkD3 scales tibble]; }; - citbcmst = derive2 { name="citbcmst"; version="1.0.4"; sha256="1zkd117h9nahwbg5z6byw2grg5n3l0kyvv2ifrkww7ar30a2yikl"; depends=[]; }; - citccmst = derive2 { name="citccmst"; version="1.0.2"; sha256="1b7awn1hjckxisfdi4ck697hwd4a5sqklwi7xzh6kgqhk9pv7vjn"; depends=[]; }; citecorp = derive2 { name="citecorp"; version="0.3.0"; sha256="0lqxa6qfysrk3rpg9fnsxhrfsd0qsbfxhc3b43090fhlxq9gk3wm"; depends=[crul data_table fauxpas jsonlite]; }; citrus = derive2 { name="citrus"; version="1.0.1"; sha256="0ca91qff280k3vc837za3670plgrlfxqy6l7y8hhiknb68ja5yiy"; depends=[clustMixType dplyr GGally ggplot2 RColorBrewer rlang rpart rpart_plot rpart_utils stringr tibble treeClust]; }; ciu = derive2 { name="ciu"; version="0.5.0"; sha256="01fg5awbf35qparry0z3kl60kww8rbaqgi2b81vmbl77bls0my7l"; depends=[crayon ggplot2 Rcpp]; }; - ciuupi = derive2 { name="ciuupi"; version="1.1.0"; sha256="0czfmmf62p1vml24s87pdwv52spqycchpkqzwk8vyd4n1z27r5s2"; depends=[functional nloptr pracma statmod]; }; ciuupi2 = derive2 { name="ciuupi2"; version="1.0.1"; sha256="04x02qmqqyrc4h4z4mpl4zn5vr9y28k6j6n30fbr9q238zd543db"; depends=[functional nloptr pracma PreciseSums statmod]; }; civis = derive2 { name="civis"; version="3.0.0"; sha256="12q96bj21832zqqbisfxmnpqw7w72v350lyf7cpjgr7cq7b51brd"; depends=[future httr jsonlite memoise]; }; - cjar = derive2 { name="cjar"; version="0.1.0"; sha256="1lachh62jsv4risbn4krd59hd8ni22figkfznh03w1mzygbvrkbg"; depends=[assertthat dplyr glue httr jose jsonlite lubridate magrittr memoise openssl progress purrr R6 rlang stringr tibble vctrs]; }; + cjar = derive2 { name="cjar"; version="0.1.2"; sha256="0rq9ryhp2h3p927227chzwbjn7x22h9ckkha2kclhx0jh7swf5y7"; depends=[assertthat dplyr glue httr jose jsonlite lubridate magrittr memoise openssl progress purrr R6 rlang stringr tibble tidyr vctrs]; }; cjbart = derive2 { name="cjbart"; version="0.2.2"; sha256="11ml35q1vjc696n6pwpbhzhf6g9r62l1yahbwkqbyd1jnkhpxmw4"; depends=[BART ggplot2 randomForestSRC Rdpack rlang tidyr]; }; cjoint = derive2 { name="cjoint"; version="2.1.0"; sha256="1bs380ji9vsc1d77wqhl0ij9xblww3g9x3hiwpcpz26wihqcx7ac"; depends=[DT ggplot2 lmtest Matrix sandwich shiny shinyBS shinyjs survey]; }; ckanr = derive2 { name="ckanr"; version="0.6.0"; sha256="1fhyyyklfsi1zva9vg397x8p0zbnchajkjb1kcfm4f861xq60j16"; depends=[crul DBI dbplyr dplyr jsonlite magrittr]; }; @@ -7270,26 +7082,25 @@ in with self; { cld2 = derive2 { name="cld2"; version="1.2.1"; sha256="01p64r2ij1i0xm3835vfnpxmmbnnaigp0md9x1hrq8gfsdwnzv3x"; depends=[Rcpp]; }; cld3 = derive2 { name="cld3"; version="1.4.2"; sha256="1f276kpg5ir1dmaacii55zb05d9r11995zv70lzrs4jn3q2h3qn6"; depends=[Rcpp]; }; clda = derive2 { name="clda"; version="0.1"; sha256="03zfanvpz1h42h2z38a63fck1p5hqig4w2svknzpw7mryji5q9b1"; depends=[MASS]; }; - cleaR = derive2 { name="cleaR"; version="0.0.1"; sha256="080jgkrzhk1h16ijf4q0x7ks9f96sx92dgxvqz22956gm0q8yxjy"; depends=[]; }; + cleaR = derive2 { name="cleaR"; version="0.0.2"; sha256="069wa132jbgn6z287z7rgkd5gyqywii542vdilgskdmxch5lkn5b"; depends=[]; }; clean = derive2 { name="clean"; version="2.0.0"; sha256="0zvk3a5yz54g2mn7y1d91z6ljglbyq1hkh4iip1dfyi15chrqv7y"; depends=[cleaner]; }; cleanNLP = derive2 { name="cleanNLP"; version="3.0.3"; sha256="0bc0ya36yhknqhqc76yf9clgiacyb6zypzirzg6i0213bqw2ihdp"; depends=[Matrix reticulate stringi udpipe]; }; cleanTS = derive2 { name="cleanTS"; version="0.1.0"; sha256="0axrc6ax2d37mlx2cix9jbk9j2ksa86g074w70lymvl40f0zaz41"; depends=[anomalize data_table gganimate ggplot2 ggtext glue imputeTestbench imputeTS lubridate shiny stringr tibble tibbletime transformr]; }; cleancall = derive2 { name="cleancall"; version="0.1.2"; sha256="1p2n7zqkg93xvhp6w2l37ifazrfpxv975bnzsd3m0j62l1ywzxax"; depends=[]; }; cleandata = derive2 { name="cleandata"; version="0.3.0"; sha256="1lm7k25j16p888xvd7rzzd3sb3namzjlpjn22xmmpzlzyl0h7dhk"; depends=[]; }; cleaner = derive2 { name="cleaner"; version="1.5.3"; sha256="0glrymsfqh3lq9n0xr202i30jm6lqwgcj0r8czy0a3066qh7hjbm"; depends=[backports crayon knitr pillar rlang vctrs]; }; - cleanerR = derive2 { name="cleanerR"; version="0.1.1"; sha256="0rghn8rx7dj5clmc1dqvqwfm9kiva04k9gxsjjga3109l4jcpg63"; depends=[data_table plyr]; }; cleangeo = derive2 { name="cleangeo"; version="0.2-4"; sha256="0yynf5d2lbz6329brzcnjm91rg6is60h2xlavz73lfxx3v549dy3"; depends=[maptools rgeos sp]; }; cleanr = derive2 { name="cleanr"; version="1.3.4"; sha256="0fdf8rsr2krkshsnzwszsrxrqif7v1gpj1dpydynpyx1szdgz4li"; depends=[checkmate fritools pkgload rprojroot]; }; clere = derive2 { name="clere"; version="1.2.0"; sha256="0qc26ycycxphrbksk7jb1m6vh66a2zsnw8k4jnazs23sqdg24im9"; depends=[Rcpp RcppEigen]; }; clespr = derive2 { name="clespr"; version="1.1.2"; sha256="1993kd70w48a110im47vcpll0c6nfrm7m33r6l8rzgwnpsmcls8g"; depends=[AER clordr doParallel foreach magic MASS pbivnorm survival]; }; clevr = derive2 { name="clevr"; version="0.1.1"; sha256="077qhqfzcy1ciar70df7q98ms003b9mnqgji1nxkx5ncw9hdkzd4"; depends=[BH Matrix Rcpp]; }; clhs = derive2 { name="clhs"; version="0.9.0"; sha256="04hd0p51j15294fv1a9qx61p5yfmh8hcx784v3x1s0kx7km34saz"; depends=[cluster ggplot2 plyr raster Rcpp RcppArmadillo reshape2 sf sp]; }; - cli = derive2 { name="cli"; version="3.2.0"; sha256="0qp8k1afrn6ppwi6d9n05fjgj02196qcsppji3q37ph99msinnnd"; depends=[glue]; }; + cli = derive2 { name="cli"; version="3.3.0"; sha256="0qqd4mscv8ndjbji7knprdlv2hhyk35gazagvapbjzq1p6yfpaf3"; depends=[glue]; }; cliapp = derive2 { name="cliapp"; version="0.1.1"; sha256="0v62lbcsja0xmlpqcps370n5c7bk4j2n8pwh9xyif5s4wpf82qz1"; depends=[cli crayon fansi glue prettycode progress R6 selectr withr xml2]; }; clickR = derive2 { name="clickR"; version="0.8.0"; sha256="0j8hl5cgdm4j4h3x3h7fp6w3xr8p350icvmf123z56f6fkj6c22z"; depends=[beeswarm stringdist]; }; clickstream = derive2 { name="clickstream"; version="1.3.1"; sha256="0z1yy5lr9m5x9ybimjy3f6kn490abdi038xi0qw7ny80f1ca6ry7"; depends=[arules ClickClust data_table ggplot2 igraph linprog MASS plyr reshape2 Rsolnp]; }; cliff = derive2 { name="cliff"; version="0.1.2"; sha256="0d7aswvsqlyai3rxxbfy08cs4qbi9fjjls62y1p95bmnhq1b3bwf"; depends=[ellipsis processx rlang]; }; - clifford = derive2 { name="clifford"; version="1.0-5"; sha256="1n7wra4z73nxv2hkdl65iwfl9cr3wn7sa6wpvfg1c7yp72kskbp0"; depends=[BH disordR magrittr mathjaxr partitions Rcpp]; }; + clifford = derive2 { name="clifford"; version="1.0-7"; sha256="0izcms6wxzvgx1iwnmyq9gaxmlz8036ai9j4xyqz0zqzr5170djy"; depends=[BH disordR magrittr mathjaxr partitions Rcpp]; }; clifro = derive2 { name="clifro"; version="3.2-5"; sha256="1p2xy5r9axkj8yk6ywaq0w5i00bdfm15drjz227nx8p4vd3q6si8"; depends=[ggplot2 httr lubridate magrittr RColorBrewer reshape2 rvest scales stringr xml2]; }; clikcorr = derive2 { name="clikcorr"; version="1.0"; sha256="0zdnbcl5q293mmm6pbn4ri7p1q6z6sff74axsb3nyd153v2xamr5"; depends=[mvtnorm]; }; climaemet = derive2 { name="climaemet"; version="1.0.1"; sha256="1kvv0xbdcgkyg0pj7hs1552dqvl94z5gvik9p77lzq65kb17zsmg"; depends=[dplyr ggplot2 httr jsonlite rappdirs readr rlang tibble tidyr]; }; @@ -7303,7 +7114,7 @@ in with self; { climwin = derive2 { name="climwin"; version="1.2.3"; sha256="1r2x5941k8l9z3517389y120sfhrskdpchc0pkibznza8aa95r85"; depends=[evd ggplot2 gridExtra lme4 lubridate Matrix MuMIn nlme numDeriv RcppRoll reshape]; }; clinDR = derive2 { name="clinDR"; version="2.3.5"; sha256="0p5pq0kpm8sfxv1a1dp2wyykp1qqbxbjz0c4f20igc25aazd7kaz"; depends=[doParallel DoseFinding dplyr foreach ggplot2 glue magrittr purrr rstan shiny tibble tidyr waiter]; }; clinDataReview = derive2 { name="clinDataReview"; version="1.2.2"; sha256="0j9w2fvbar30c03zcbhmy8qgdcv5hwj0q873hslxs9l4sca108zd"; depends=[bookdown clinUtils crosstalk data_table ggplot2 haven htmltools htmlwidgets jsonlite jsonvalidate knitr plotly plyr rmarkdown stringr yaml]; }; - clinPK = derive2 { name="clinPK"; version="0.9.0"; sha256="1n1m8szd8mxdshwz8l3hfdxi7zrmsah46kxkv7jiffwnfhijfhsm"; depends=[curl testit]; }; + clinPK = derive2 { name="clinPK"; version="0.11.1"; sha256="1mzws5pgczdghxl2h0zgrp44in80kplnhy3gc7g4g8wssjwywbb3"; depends=[]; }; clinUtiDNA = derive2 { name="clinUtiDNA"; version="1.0"; sha256="0x3hb09073gkh60fc8ia0sfk948sm6z6j8sqkz275k4m8ryrabas"; depends=[]; }; clinUtils = derive2 { name="clinUtils"; version="0.1.1"; sha256="0j06plczw3k54yc07dv6x931nmg2cfvkcmza16pji1zlx7nzs3sc"; depends=[crosstalk data_table DT haven htmlwidgets knitr plyr viridisLite]; }; clinfun = derive2 { name="clinfun"; version="1.1.0"; sha256="1fca5nd36xzb50ccbwrb4xxvzhqg7s60smwr42k5z9sfywfh79y8"; depends=[mvtnorm]; }; @@ -7326,7 +7137,7 @@ in with self; { cloudstoR = derive2 { name="cloudstoR"; version="0.2.0"; sha256="0x9pl9x5sjs5vwcz5i1r5ymyv3rlv9adjc5y9kvxljdxgvnv6i08"; depends=[cli curl getPass httr keyring rio XML]; }; clr = derive2 { name="clr"; version="0.1.2"; sha256="088ks9lrhlyvg3yvlfmb0091yp6qp5bzg9h5r6ryv3bk6y56sajx"; depends=[dplyr lubridate magrittr]; }; clttools = derive2 { name="clttools"; version="1.3"; sha256="0va9k1b4xsb2sgpxzvid6sa8m6b8i3r4kgghclmb78nnrs480cwi"; depends=[]; }; - clubSandwich = derive2 { name="clubSandwich"; version="0.5.5"; sha256="1ifnc2rg5agf7lpilmm27iq0af7ghfhkvwykajhvykgf6h4clvhf"; depends=[sandwich]; }; + clubSandwich = derive2 { name="clubSandwich"; version="0.5.6"; sha256="0mll8q61vnb980dck8ihxcy89z8m7f8i16mqdvr4l2ljywkhpzvd"; depends=[sandwich]; }; clue = derive2 { name="clue"; version="0.3-60"; sha256="0apgpdnn74mqg2bnr8yjyxgyvdl411h0r2b1r2xd67k21pyxs8bd"; depends=[cluster]; }; clusTransition = derive2 { name="clusTransition"; version="1.0"; sha256="0q5cxkb5mrygyp2zg177rwn5cgpnyqln7yjvjflb48ll3jr98342"; depends=[flexclust]; }; cluscov = derive2 { name="cluscov"; version="1.1.0"; sha256="0345v5r6b53243h5bir29v0w77pmwjqjkqfrjnk5j5r1wbh98q1w"; depends=[MASS quantreg]; }; @@ -7343,7 +7154,7 @@ in with self; { clusterCons = derive2 { name="clusterCons"; version="1.2"; sha256="1k1y6cqpb5fyi2mbx2i4jbiwz0fni44lnq0xnv3pl0x3dpscwh6q"; depends=[apcluster cluster lattice RColorBrewer]; }; clusterCrit = derive2 { name="clusterCrit"; version="1.2.8"; sha256="10pz1bikdbkm2ky3xnagp0qv60whalavp6j39b4p7d75jj5xcxgk"; depends=[]; }; clusterGeneration = derive2 { name="clusterGeneration"; version="1.3.7"; sha256="0p1dwl08bf20h7pnspnsycrp3v48nm2miwcnlklyc4gdyzc2jksk"; depends=[MASS]; }; - clusterGenomics = derive2 { name="clusterGenomics"; version="1.0"; sha256="127hvpg06is4x486g1d5x7dfkrbk7dj35qkds0pggnqxkq3wsc1c"; depends=[]; }; + clusterHD = derive2 { name="clusterHD"; version="1.0.1"; sha256="1dawwmzb3l6sr8agmrpkh80p0x7ivfy1f9j6qrma8px6j52mbwbk"; depends=[Ckmeans_1d_dp cluster mclust Rcpp RcppArmadillo]; }; clusterPower = derive2 { name="clusterPower"; version="0.7.0"; sha256="1ha7iz1afmgccxhxsl3y1fd9rbf35nrzp6bsz4c4zl0931xbazfb"; depends=[car dplyr foreach lme4 lmerTest mathjaxr nlme progress R_utils shiny tidyr]; }; clusterRepro = derive2 { name="clusterRepro"; version="0.9"; sha256="0s7qqvaf5yxxwhw6qyzfmk65c49yz405gljarwav6aglkx9883cl"; depends=[]; }; clusterSEs = derive2 { name="clusterSEs"; version="2.6.5"; sha256="0d8b79mg0wxfpmx3xq22p9apa2cs2ylbml7lf37w386s6kdgz7ns"; depends=[AER dfidx Formula lmtest mlogit plm sandwich]; }; @@ -7372,7 +7183,7 @@ in with self; { cmdfun = derive2 { name="cmdfun"; version="1.0.2"; sha256="1pbcq7hi2lcmqnghmy3q2fsk0c9fy5m0637acyzmc096fxbx723j"; depends=[magrittr purrr R_utils rlang testthat usethis]; }; cmenet = derive2 { name="cmenet"; version="0.1.1"; sha256="0f7bci6nn63q243i7wvhr9mqlf64gw8w042nc1lqb986p7zfxihk"; depends=[glmnet hierNet MASS Rcpp RcppArmadillo sparsenet]; }; cmfrec = derive2 { name="cmfrec"; version="3.4.2"; sha256="0qg2ssrijfsrpr4gl0rri7kxyf1s8ifdvsizpxm5r8srl0j64hq1"; depends=[]; }; - cml = derive2 { name="cml"; version="0.0.2"; sha256="0i1c9xfrb5d5krza5p88cvnhkswp49csihy6ijwxqmqk20g78r3c"; depends=[MASS vegan]; }; + cml = derive2 { name="cml"; version="0.0.5"; sha256="0j1awj84b68j13f7s0bs294sx7cdn9dch0vjclsnarwzv2alavx1"; depends=[MASS vegan]; }; cmm = derive2 { name="cmm"; version="0.12"; sha256="0q6hs56hhi9vaanx7i7gg7ncv0h29lndla66g9chzmh3lchq3r20"; depends=[]; }; cmmr = derive2 { name="cmmr"; version="0.1.2"; sha256="0nik1pzd1rckalvn7xh6s699kkdjnra3q3bn5x16c1lmpz5bp2s4"; depends=[httr progress RJSONIO]; }; cmna = derive2 { name="cmna"; version="1.0.5"; sha256="161qc7q88ajm3l62bq03lpf35bdii1w1d111085zvs3hrf09iybw"; depends=[]; }; @@ -7390,15 +7201,15 @@ in with self; { cmtest = derive2 { name="cmtest"; version="0.1-2"; sha256="1qff6vx0c9sw4xm7fwhck165snrahlmi91na64f7axad14qmp34d"; depends=[Rdpack]; }; cmvnorm = derive2 { name="cmvnorm"; version="1.0-7"; sha256="0zi4adh3gd8nbcnsn9fqiiqi5pc2jx782vw394gi988vyngqr7cq"; depends=[elliptic emulator]; }; cna = derive2 { name="cna"; version="3.3.0"; sha256="1wnimcp3mpilam02x7d34mi6xavz2mw61n5axkllz1jl1p2pjmmz"; depends=[car Matrix matrixStats Rcpp]; }; - cnaOpt = derive2 { name="cnaOpt"; version="0.5.0"; sha256="0vfbyfd5gwyz7fykskwargckmzq5v6h5irmb3khmpk9a882w1s32"; depends=[cna dplyr ggplot2 matrixStats Rcpp]; }; + cnaOpt = derive2 { name="cnaOpt"; version="0.5.1"; sha256="02kb7hlj3aa9kxj2nyh45cgk8gxa4cx5azi6aic6nblrj30ic1g0"; depends=[cna dplyr ggplot2 matrixStats Rcpp]; }; cnbdistr = derive2 { name="cnbdistr"; version="1.0.1"; sha256="05qi41jimslbngjgbwzfda0q25hb28ax79v9yckvrbpgjc8dk990"; depends=[hypergeo]; }; - cncaGUI = derive2 { name="cncaGUI"; version="1.0"; sha256="1v55kvrc05bsm1qdyfw3r3h64wlv3s6clxbr8k512lfk99ry42kn"; depends=[MASS plotrix rgl shapes tcltk2 tkrplot]; }; + cncaGUI = derive2 { name="cncaGUI"; version="1.1"; sha256="0wmapwfag2grshmdrpmlinzikrsprcc8a1afq4dfkwr54rb3m6ky"; depends=[MASS plotrix rgl shapes tcltk2 tkrplot]; }; cns = derive2 { name="cns"; version="0.1.0"; sha256="1kn1cq32pp05ag22n7iwjxn6lxpqn443npzk6vdskjm5pbnsc33k"; depends=[]; }; cnum = derive2 { name="cnum"; version="0.1.3"; sha256="0iphbx5ii4ij0bi9nqdz793i4gk2164jlgz5xn8yzsayjmizhdk2"; depends=[BH Rcpp stringr]; }; coRanking = derive2 { name="coRanking"; version="0.2.3"; sha256="09dq4xxpi632jb9vh96rsy2g51sn6apbccx9c8073hfsm078b4w6"; depends=[]; }; coala = derive2 { name="coala"; version="0.6.1"; sha256="0c29bwlls22gfkxyc51gx1fnk8725327j6kfvrjcg5ckyw5ydqhq"; depends=[assertthat digest R6 Rcpp RcppArmadillo rehh scrm]; }; - coalescentMCMC = derive2 { name="coalescentMCMC"; version="0.4-1"; sha256="0xxv1sw5byf84wdypg5sfazrmj75h4xpv7wh4x5cr9k0vgf80b3s"; depends=[ape coda lattice Matrix phangorn]; }; - coalitions = derive2 { name="coalitions"; version="0.6.20"; sha256="0v9345xscfdyn5qdj6ncwzbbpry942dlly91l997ba42f9j6qdjk"; depends=[checkmate dplyr ggplot2 gtools jsonlite lubridate magrittr purrr RCurl rlang rvest stringr tibble tidyr xml2]; }; + coalescentMCMC = derive2 { name="coalescentMCMC"; version="0.4-4"; sha256="09abhcp6y98378kf018inhxpkkirch5636nskywn0p6shp2q278x"; depends=[ape coda lattice Matrix phangorn]; }; + coalitions = derive2 { name="coalitions"; version="0.6.23"; sha256="1bvvn9j31lx14k3w5yj5zgk4qkm8nmmk8q8ks8m2y18bm6m1d94i"; depends=[checkmate dplyr ggplot2 gtools jsonlite lubridate magrittr purrr RCurl rlang rvest stringr tibble tidyr xml2]; }; coarseDataTools = derive2 { name="coarseDataTools"; version="0.6-6"; sha256="1g9hxyp2vdhq1zr18qlf2aqwp9d9hr07k6grmvblj2xrwlzfvc1p"; depends=[MCMCpack]; }; cobalt = derive2 { name="cobalt"; version="4.3.2"; sha256="0k1ibmnh46wk6bq1xra5chi0l6a4ncgaagwgzmhnmpj1drsd1gxr"; depends=[backports crayon ggplot2 gridExtra gtable rlang]; }; cobiclust = derive2 { name="cobiclust"; version="0.1.0"; sha256="068cqrhx7lxsvcjb62rgrca7y20cybz4445bl1qc6k16ca4bh0m9"; depends=[cluster]; }; @@ -7425,13 +7236,12 @@ in with self; { codetools = derive2 { name="codetools"; version="0.2-18"; sha256="0a2c115glq8jxixwfigrpvjabhxchn9r4mc40y41dg9dg6wsd7hs"; depends=[]; }; codexcopd = derive2 { name="codexcopd"; version="0.1.0"; sha256="0pkl29fybflnj42xj8agyw6s3xif9vr5690vlkv5n3dxs8ji582h"; depends=[]; }; codified = derive2 { name="codified"; version="0.2.0"; sha256="1hmw7yrw4qx8v9rkqqvqf4013s9whq5qlgwz7v882j4slpvm6gb1"; depends=[checkmate dplyr kableExtra knitr magrittr readr rlang tibble tidyr]; }; - codingMatrices = derive2 { name="codingMatrices"; version="0.3.3"; sha256="0nbx3w016d8rw4pidf72zcw1hf95y7h0rb5ska49nfnjkh3qc0p2"; depends=[fractional Matrix]; }; + codingMatrices = derive2 { name="codingMatrices"; version="0.3.4"; sha256="05ndy51wpqyk1b3nq95zn6lxgzg5hzqbr2w7b2v8ar291sxvc4g7"; depends=[fractional Matrix]; }; codyn = derive2 { name="codyn"; version="2.0.5"; sha256="1iqlh3ydnqi7s2b3fa2zgb05j763qgxriys4piawwmgrdrvd3d9q"; depends=[assertthat permute vegan]; }; coefficientalpha = derive2 { name="coefficientalpha"; version="0.7"; sha256="0li1js501sa8m0ba76ymn4lz5y4np7kf96gnxz9kypg50kd58yis"; depends=[lavaan rsem]; }; coefplot = derive2 { name="coefplot"; version="1.2.8"; sha256="0qxa57sm5hncmd4mxab1c7hk34n2s5fsn51ck6ik2ciynhgcqxvn"; depends=[dplyr dygraphs ggplot2 magrittr plotly plyr purrr reshape2 tibble useful]; }; coenocliner = derive2 { name="coenocliner"; version="0.2-3"; sha256="07hik9y84nj1l83spcp1hq9lj960zsg3v0i8rk0xfv25grrakp85"; depends=[]; }; coenoflex = derive2 { name="coenoflex"; version="2.2-0"; sha256="06f75spl4wkbgicm0bksnid2lb1gkvi05915wn5y4km45d82fkkr"; depends=[mgcv]; }; - coexist = derive2 { name="coexist"; version="1.0"; sha256="15ydhrx996i6caa0360c2bgn2zvgwfg5wdhsqq1gvrggs15w7nml"; depends=[]; }; cofad = derive2 { name="cofad"; version="0.1.1"; sha256="0c27wfdk98mq0531avlgfxf2wmxcjyg39pgl9i37im7ri2s7kpnr"; depends=[]; }; cofeatureR = derive2 { name="cofeatureR"; version="1.1.1"; sha256="1awfrlnbpw9ivfvaahznx6dx5jp8ln0154vh2pznp520q59h1mbs"; depends=[dplyr ggplot2 lazyeval tibble]; }; coffee = derive2 { name="coffee"; version="0.1.1"; sha256="06v19i6karcn9a1sminfi2k0c1zzv9m5dm8qfyqjqcbc78yvwif0"; depends=[IntCal]; }; @@ -7451,7 +7261,6 @@ in with self; { collapse = derive2 { name="collapse"; version="1.7.6"; sha256="0hyxdmy3nm1jwls6h6q487hsx5yjiiy2l3wy1x29k4k69fc3xkxw"; depends=[Rcpp]; }; collapsibleTree = derive2 { name="collapsibleTree"; version="0.1.7"; sha256="0b65pbp1wnpsrayqi630ds4r98jvcvynnlp6wxdqrnnr9nzw5343"; depends=[data_tree htmlwidgets]; }; collateral = derive2 { name="collateral"; version="0.5.2"; sha256="1wnzgpayjsqnqry0cdmkijyjkkjhbc8hxwlkx7aj9qwaiz7wiibr"; depends=[crayon pillar purrr]; }; - collectArgs = derive2 { name="collectArgs"; version="0.4.0"; sha256="0fz5w1xsxiddzrwahrg50px4igyhd4plq655jaix6grancs7kvix"; depends=[magrittr]; }; collections = derive2 { name="collections"; version="0.3.5"; sha256="053ig88pva78wxxwya3v7cz853k563dkpgxrf2xvd0l0d9fanxmz"; depends=[]; }; collidr = derive2 { name="collidr"; version="0.1.3"; sha256="18ki8mwf5ihbgfbhdbbk9ljs44js3rqgl1g6g3ch6dynz61sr6hn"; depends=[dplyr jsonlite stringr]; }; collin = derive2 { name="collin"; version="0.0.2"; sha256="12gxndq5xqfvc9m10y6pjf99npr65dp1fhpy5lg9wnq7r4zv2610"; depends=[dlnm MASS mgcv nlme VGAM]; }; @@ -7463,8 +7272,8 @@ in with self; { colocr = derive2 { name="colocr"; version="0.1.1"; sha256="0ijykza6fdmwbr5zbyfjf382anrxh0lb9hlallyawfi6z076fv7j"; depends=[imager magick magrittr scales shiny]; }; colorBlindness = derive2 { name="colorBlindness"; version="0.1.9"; sha256="1gzjxvfsj9g07jkcmw04wwzl4rwy16prj4zvsa1mw2zavqindp8h"; depends=[colorspace cowplot ggplot2 gridGraphics gtable]; }; colorDF = derive2 { name="colorDF"; version="0.1.4"; sha256="1q1xfa0h7mbihbv1bpw94rsh6mp4l2v2d2spqwh6r3iy0hf9yk1c"; depends=[crayon purrr]; }; - colorRamps = derive2 { name="colorRamps"; version="2.3"; sha256="0shbjh83x1axv4drm5r3dwgbyv70idih8z4wlzjs4hiac2qfl41z"; depends=[]; }; - colorSpec = derive2 { name="colorSpec"; version="1.3-0"; sha256="1dkv3c6sgmvnw19r2pc2499s5xahdb95q9m7mpppa604449lczyd"; depends=[MASS spacesXYZ]; }; + colorRamps = derive2 { name="colorRamps"; version="2.3.1"; sha256="12jnkj50yh2hc5l7j56lrrrmn58akrj9dwj98vzf42iq4h42kwb1"; depends=[]; }; + colorSpec = derive2 { name="colorSpec"; version="1.4-0"; sha256="02k2264kc9104jayjf4j7kniwxialw7f1f3l3fvzz3nmwv71bhw3"; depends=[]; }; colorblindcheck = derive2 { name="colorblindcheck"; version="1.0.0"; sha256="17bcnjzpnb0a0fw27y5slrakdg0p4mzhcj8684622ljinszvdz58"; depends=[colorspace spacesXYZ]; }; colordistance = derive2 { name="colordistance"; version="1.1.2"; sha256="14j63anmf4j1lmcd7nyr9k7alhycdkrr5yiar262j8wha68f245n"; depends=[abind ape clue emdist gplots jpeg magrittr mgcv plotly png qpdf scales scatterplot3d spatstat_geom]; }; coloredICA = derive2 { name="coloredICA"; version="1.0.0"; sha256="1xj4dsrwgqzm2644nk3y8nj47m036b4ylh6v60jccj3707spb32r"; depends=[MASS]; }; @@ -7485,7 +7294,6 @@ in with self; { colourpicker = derive2 { name="colourpicker"; version="1.1.1"; sha256="1q1wi3g403fbzp4ys3gsjbwdc86x770cx323qgi47ca8n219kl50"; depends=[ggplot2 htmltools htmlwidgets jsonlite miniUI shiny shinyjs]; }; colourvalues = derive2 { name="colourvalues"; version="0.3.7"; sha256="1xpdxqx328l6rjmys7gqrq9pyla7sfmb3xzjrhyksx7i4ncmndpr"; depends=[BH Rcpp]; }; colourvision = derive2 { name="colourvision"; version="2.0.4"; sha256="1abrp6x9wdl5bdbysgziznzmiaik8v4n76b4bgnlk13mwbhfn47h"; depends=[Matrix]; }; - colr = derive2 { name="colr"; version="0.1.900"; sha256="0ilz1y0jd2vgyh81g3dwx2l64sir6z6sgmqx7lnvr1hafsqnwfc8"; depends=[]; }; colt = derive2 { name="colt"; version="0.1.1"; sha256="028jqvgr14ig8jxp8h2lrf7mainzppgqh6v1479qfv4l9is3bnwy"; depends=[crayon]; }; comFuncs = derive2 { name="comFuncs"; version="0.0.5"; sha256="1n17s28rf6jbii8cffzxylp5dr47x4my7chvf2j1zh4vrkml0n1n"; depends=[rstudioapi shiny]; }; comat = derive2 { name="comat"; version="0.9.3"; sha256="0igcqvz1sjprxw6qf3wy9awywx9g5xcdkr9sl3vb61jyxxppnagh"; depends=[Rcpp RcppArmadillo]; }; @@ -7499,7 +7307,7 @@ in with self; { comclim = derive2 { name="comclim"; version="0.9.5"; sha256="1s6zh16j0q2n7gkvhd4bym9w3hyg4b9n5lpgspqp2nlygdl6jxxb"; depends=[]; }; cometExactTest = derive2 { name="cometExactTest"; version="0.1.5"; sha256="0ar9axm9cd1wd937xcmsmd7xqilnfyab8gsrpkiqpc3fjh86qyrp"; depends=[dplyr]; }; cometr = derive2 { name="cometr"; version="0.2.0"; sha256="0fbg1lfw0q4lfk4svflfwjfmwxbrdvmrvxry90xp39i7g8zd2ahd"; depends=[callr httr jsonlite R_utils R6 yaml]; }; - comf = derive2 { name="comf"; version="0.1.10"; sha256="0iimah487k6wf9sf4y39ldlm8ww017629bj8115ri9ffp0353g33"; depends=[plyr reshape]; }; + comf = derive2 { name="comf"; version="0.1.11"; sha256="17hby9qah3bd4p3rfhd1lf3yaz5qxxd4p5aaq1ql7jdixb9p51q0"; depends=[plyr reshape]; }; commentr = derive2 { name="commentr"; version="1.0.4"; sha256="0anlcbk8rj0yr8i23qmr6v5ws0695nkc3mvgr6pnq1fg2d4c4brj"; depends=[stringr]; }; commonmark = derive2 { name="commonmark"; version="1.8.0"; sha256="0s765c650id19ygx57bsjsw93fwxywmp50zid671bkxi6wlyf1vx"; depends=[]; }; commonsMath = derive2 { name="commonsMath"; version="1.2.5"; sha256="1c4lgmggpc22mhwcpy521b2pg8wf4bbjp0a6rbcn0aki90xw9ckk"; depends=[]; }; @@ -7509,16 +7317,16 @@ in with self; { compactr = derive2 { name="compactr"; version="0.1"; sha256="0f2yds6inmx0lixj08ibqyd2i61l2cbg1ckgpb8dl2q7kcyyd6mx"; depends=[]; }; comparator = derive2 { name="comparator"; version="0.1.2"; sha256="1mygip50mc3jni1zc6jhjg2mx61sjgdq5w7snqdvv1rycp3fdpb1"; depends=[clue proxy Rcpp]; }; compare = derive2 { name="compare"; version="0.2-6"; sha256="0k9zms930b5dz9gy8414li21wy0zg9x9vp7301v5cvyfi0g7xzgw"; depends=[]; }; - compareC = derive2 { name="compareC"; version="1.3.1"; sha256="0dachfr23lps2jj1y5gc958k54vskmww84gdgk4amihsdgjsnphg"; depends=[]; }; + compareC = derive2 { name="compareC"; version="1.3.2"; sha256="0r3d03yj5fjzfc6awc16x9420366dcy3nhvibjlrn0m10il714pc"; depends=[]; }; compareDF = derive2 { name="compareDF"; version="2.3.3"; sha256="1pzrfjwfpdmcfcxh3rnddwdq3vnfq639cvwhvql1vly84p02f1gi"; depends=[data_table dplyr htmlTable openxlsx rlang stringr tibble tidyr]; }; compareGroups = derive2 { name="compareGroups"; version="4.5.1"; sha256="0ll770lj2j6nnjdpkij1wadd2nqppkdjcfglfx13kk5r5ldmfyq1"; depends=[chron flextable HardyWeinberg kableExtra knitr officer rmarkdown survival writexl]; }; - compareODM = derive2 { name="compareODM"; version="1.2"; sha256="019hq8j56asjvh4x1p65785mf38xr05j3by0749gl9k9yl8645da"; depends=[XML]; }; comparer = derive2 { name="comparer"; version="0.2.2"; sha256="1rhx9an7qi9r3cv2zpnb9qw0byg06zabg99v51mal218080r6rvm"; depends=[R6]; }; comparison = derive2 { name="comparison"; version="1.0-5"; sha256="0vg8s9j2xjzv7bidd59givxgcqzhdd29q84dj4ww2a6vkmq269r7"; depends=[isotone]; }; compas = derive2 { name="compas"; version="0.1.1"; sha256="0hhqg2xsifnh1v931mmfij6s5idy9s984hdnrkp9n3f3azgwvcz4"; depends=[bio3d Rcpp RcppEigen]; }; comperank = derive2 { name="comperank"; version="0.1.1"; sha256="0wz46rkpx1cjjng3i03pms2x27cik9wbx7al5r289ym3664zb83m"; depends=[comperes dplyr Rcpp rlang tibble]; }; comperes = derive2 { name="comperes"; version="0.2.5"; sha256="0pfpbnbnpln3srn2m248v0n72mw72fh0rvqpvswi1qmjcpkfkd7v"; depends=[dplyr magrittr rlang tibble tidyr]; }; competitiontoolbox = derive2 { name="competitiontoolbox"; version="0.7.0"; sha256="0cb298fnivw3hqn99jgxlg7qfjkwy6zs0vgkc3x7vz3alk17p5p1"; depends=[antitrust ggplot2 rhandsontable shiny trade]; }; + compicc = derive2 { name="compicc"; version="0.1.0"; sha256="1j2yy4dw3g96vpm3dq81dixhfzm3nqqawphmmg9hcsqir5f6xg9a"; depends=[irr]; }; completejourney = derive2 { name="completejourney"; version="1.1.0"; sha256="0ysbpmd7rglz3diy2cpcgvmmcnysradb4ddiwix7kbhzrhvhrdrs"; depends=[curl dplyr progress stringr tibble zeallot]; }; complexNet = derive2 { name="complexNet"; version="0.1.0"; sha256="0jswxr16j7irjbfc5p5vgdaksh3gs8gyx3cwbs0acrpyykxpi5k7"; depends=[]; }; complexity = derive2 { name="complexity"; version="1.1.2"; sha256="0y1rlz456mny4d0kr8rx26qg5frr3zxsbzm1cc76h475vad4ns28"; depends=[combinat shiny]; }; @@ -7530,7 +7338,7 @@ in with self; { comprehenr = derive2 { name="comprehenr"; version="0.6.10"; sha256="1wlc06swm45nxg9hgik3wj832sr074i3p0j5kxm0i2r74klfy22w"; depends=[]; }; compute_es = derive2 { name="compute.es"; version="0.2-5"; sha256="00133s3l3g70xrfnxgxhvbjr8izvaj9h0c73iaiyjmlgj84x69m8"; depends=[]; }; comsimitv = derive2 { name="comsimitv"; version="0.1.5"; sha256="0g1b14bx0dgy7y24gxlj0r2sgiild14cvr1zmf37df7g3bswn112"; depends=[MASS vegan]; }; - comtradr = derive2 { name="comtradr"; version="0.2.2"; sha256="177gnmgwqns65z5y9nw4xp8qmw5z70454zb54jw1879xrgfsrciz"; depends=[httr jsonlite magrittr purrr]; }; + comtradr = derive2 { name="comtradr"; version="0.3.0"; sha256="17fdcgx27352jqdvz05q3crg29h78d0alp0abxmkzymwk3yq842j"; depends=[httr jsonlite magrittr purrr]; }; con2aqi = derive2 { name="con2aqi"; version="0.1.0"; sha256="1gdd1y6xg26fz199hvryzsnp16qbsz13chqqxyxnkgrai1l72mhf"; depends=[]; }; con2lki = derive2 { name="con2lki"; version="0.1.0"; sha256="005bk3y7il94h7zlkdjlibm1zm9yplbbzlybdjxmckh67sr6d03x"; depends=[]; }; conStruct = derive2 { name="conStruct"; version="1.0.4"; sha256="1klhzsxrkbz16dnm3r2qxyq2z02zqrps9kij2jy6241ni9qmnn2f"; depends=[BH caroline doParallel foreach gtools Rcpp RcppEigen rstan rstantools StanHeaders]; }; @@ -7542,16 +7350,18 @@ in with self; { concorR = derive2 { name="concorR"; version="0.2.1"; sha256="15pi24xka83p3hm33rfs9vnfkzywmvpz3hpncgqmc9ifwag0zgra"; depends=[igraph sna]; }; concordance = derive2 { name="concordance"; version="2.0.0"; sha256="1xlm0c91bsbij8dr23fh781c6bg8l74kma6x7nnapkpm7jim279x"; depends=[dplyr purrr rlang stringr tibble tidyr]; }; concreg = derive2 { name="concreg"; version="0.7"; sha256="0g4my3ra9p797vcky5hsgcicsdbmczgd8fklxrkw2jrgwc0xrkaf"; depends=[survival]; }; + concstats = derive2 { name="concstats"; version="0.1.2"; sha256="1da7gcxhsl09x5n1q4rbz4i0ldq71vxw6m432kjl2p05mps3ybla"; depends=[dplyr readr]; }; concurve = derive2 { name="concurve"; version="2.7.7"; sha256="185jwz7a33sc9gbkfbcxwzgzd39xn5x72d0nk6p045mq3xssk3j9"; depends=[bcaboot boot colorspace dplyr flextable ggplot2 knitr metafor officer pbmcapply ProfileLikelihood scales survival survminer tibble tidyr]; }; cond = derive2 { name="cond"; version="1.2-3.1"; sha256="1j0gf28mg2j6ahs83nk662bix1lb2c9184vn8sblw433zxqaa2ny"; depends=[statmod survival]; }; condGEE = derive2 { name="condGEE"; version="0.1-4"; sha256="0mqj2pc91n8h3arpd4b9f7ndbcnai21c67is22qg22wj7vhhs87h"; depends=[numDeriv rootSolve]; }; condMVNorm = derive2 { name="condMVNorm"; version="2020.1"; sha256="115pxnff2ckdxx0avbs0hfdhh1sljiz1y6h7ggd5hidrxd3559m4"; depends=[mvtnorm]; }; - condSURV = derive2 { name="condSURV"; version="2.0.1"; sha256="0xjpypc4fzrnfjcznyc2bslkkza4fib8nx8ff2j7xh2nf84lk3f1"; depends=[doParallel doRNG foreach KernSmooth np survival]; }; + condSURV = derive2 { name="condSURV"; version="2.0.2"; sha256="1zw79rll44dx5vysfixfp684gf8c3c37xazwgrfzjbq54i3jwmir"; depends=[doParallel doRNG foreach KernSmooth np survival]; }; condTruncMVN = derive2 { name="condTruncMVN"; version="0.0.2"; sha256="1dicfa82yg8k83lnb5c17jnqwgkazpb8404kfzdf6ikmndwjn0zg"; depends=[condMVNorm matrixNormal tmvmixnorm tmvtnorm truncnorm]; }; condformat = derive2 { name="condformat"; version="0.9.0"; sha256="151rpnrnbj5ilckf99m6k3c26r1sr94496kws9w91faxilvl180b"; depends=[dplyr gridExtra gtable htmlTable htmltools knitr magrittr openxlsx rlang rmarkdown scales tibble tidyselect]; }; condir = derive2 { name="condir"; version="0.1.3"; sha256="09b0nfdi39mq0531bjzmk8wnmzkyvcd2q5fyk8lnam3n6fz3dg2y"; depends=[BayesFactor effsize knitr psych shiny xtable]; }; conditionz = derive2 { name="conditionz"; version="0.1.0"; sha256="0ijnsg6n3p3y8y9il012xg5if57hdzvrgxjcykfrrlil4m7ixn6c"; depends=[R6 uuid]; }; condmixt = derive2 { name="condmixt"; version="1.1"; sha256="1x6n3ylaa9ywvz7v63i2pvd2lxm95wq19xy741g9hy73ld7hd7zn"; depends=[evd]; }; + conductor = derive2 { name="conductor"; version="0.1.0"; sha256="1qphpnd9sijhjr5vsvbm96404qairsnx32a8vn36w60s4mn5ilx7"; depends=[htmltools R6 shiny]; }; condusco = derive2 { name="condusco"; version="0.1.0"; sha256="0zydinzlksynkz4r712rzv9qqdx8dkdz3h1ygi9cfmd6hya3580s"; depends=[assertthat bigrquery DBI jsonlite]; }; condvis = derive2 { name="condvis"; version="0.5-1"; sha256="1ngxqfa0mr86cv610da4ljypxpdvx0n5pfgj3zfksnwxlwc0dvbj"; depends=[MASS]; }; condvis2 = derive2 { name="condvis2"; version="0.1.1"; sha256="1al7dx1x4028m3aggblwxn9qsb69swh9nil9bx7d0z32cqakka04"; depends=[cluster colorspace DendSer ggplot2 gower plyr RColorBrewer scales shiny]; }; @@ -7572,16 +7382,16 @@ in with self; { conformalInference_multi = derive2 { name="conformalInference.multi"; version="1.1.1"; sha256="1xc879ygv9avamy29a6rdfb6pknaz82f3k6392c8a90sgfn3bx3d"; depends=[future future_apply ggplot2 glmnet gridExtra hrbrthemes]; }; conformalbayes = derive2 { name="conformalbayes"; version="0.1.0"; sha256="0k54agyg05jh4pjpmamy5dp67a9f1js304f2589h9jvq26yyd9qa"; depends=[cli loo matrixStats rstantools]; }; confoundr = derive2 { name="confoundr"; version="1.2"; sha256="000vf828qv04pplx8yc8q3mafxf4g0axip6z5zbsj2581yxv9jjh"; depends=[dplyr ggplot2 gridExtra magrittr purrr rlang Rmpfr scales stringr tidyr]; }; - confreq = derive2 { name="confreq"; version="1.5.6-4"; sha256="0mi6panjdvgpxwpylg6s3bhx9679jpqrxsicb14lq1w6c20rg7qj"; depends=[gmp vcd]; }; + confreq = derive2 { name="confreq"; version="1.5.6-7"; sha256="1rrnq3vg85fn1xyc24mqlp22lngv7005nihx896j90pp80finxpi"; depends=[gmp vcd]; }; conicfit = derive2 { name="conicfit"; version="1.0.4"; sha256="1d704xgiyqmbwfxnsmhqg885x10q8yqxmrk4khqpg3lh696bw97d"; depends=[geigen pracma]; }; conics = derive2 { name="conics"; version="0.3"; sha256="06p6dj5dkkcy7hg1aa7spi9py45296dk0m6n8s2n3bzh3aal5nzq"; depends=[]; }; conjoint = derive2 { name="conjoint"; version="1.41"; sha256="1iq3226a6fn1gddmh2nxlzvjcvbj7502r9520g9d4xdmk8smfx33"; depends=[AlgDesign broom cluster fpc ggfortify ggplot2]; }; - conjurer = derive2 { name="conjurer"; version="1.4.0"; sha256="0llvqjg0rrd75n1gz9b1njizs6s1mgygcv7hmalknqibvxd185ac"; depends=[]; }; + conjurer = derive2 { name="conjurer"; version="1.5.0"; sha256="11bxnbfmm19z06364k7l1kq50qxfkhclsjw5i6hal8hw1lg4zc1b"; depends=[httr jsonlite]; }; conleyreg = derive2 { name="conleyreg"; version="0.1.7"; sha256="1mvbzqd83vd54ig4kbi1v3h4v0j6pyj8a5ja1f3w2n7k8aszy748"; depends=[data_table doParallel fixest foreach lmtest lwgeom Matrix Rcpp RcppArmadillo Rdpack s2 sf]; }; conmet = derive2 { name="conmet"; version="0.1.0"; sha256="0iwr8mmh9lk0psqxkgnd7ldhg57ivbkv0b3a18gli06983mhzjdc"; depends=[dplyr DT foreign Hmisc lavaan openxlsx purrr semTools shiny shinydashboard shinyWidgets stringr summarytools waiter]; }; connectwidgets = derive2 { name="connectwidgets"; version="0.1.1"; sha256="0sj8nik6dyyzflpq9vqd8wzlhky6jl2wfiaz788i6a2wdhckyc1m"; depends=[bslib crosstalk digest dplyr glue htmltools htmlwidgets httr jsonlite magrittr purrr R6 reactable reactR rlang sass tibble]; }; conogive = derive2 { name="conogive"; version="1.0.0"; sha256="0a8v7v0fds0psfnbx9x45way8z1f1xn2ncgbrn5rb6fjq0a1zs4x"; depends=[assertthat checkmate mvtnorm psych]; }; - conos = derive2 { name="conos"; version="1.4.5"; sha256="1c2yn3nsvwwglgxghnrybmkcvdc16gxxbcfqfnp70q4h6nz7f65g"; depends=[abind ComplexHeatmap cowplot dendextend dplyr ggplot2 ggrepel gridExtra igraph irlba leidenAlg magrittr Matrix Matrix_utils N2R R6 Rcpp RcppArmadillo RcppEigen RcppProgress reshape2 rlang Rtsne sccore]; }; + conos = derive2 { name="conos"; version="1.4.6"; sha256="0sja26p79d6g73frz71y1cjzda305b2haji80rdik2hndn9fnlfd"; depends=[abind ComplexHeatmap cowplot dendextend dplyr ggplot2 ggrepel gridExtra igraph irlba leidenAlg magrittr Matrix Matrix_utils N2R R6 Rcpp RcppArmadillo RcppEigen RcppProgress reshape2 rlang Rtsne sccore]; }; conover_test = derive2 { name="conover.test"; version="1.1.5"; sha256="0f1p10klidk1xic1wd48j9rjh2fb3z6pfjx4y021lglx1w3av68k"; depends=[]; }; conquer = derive2 { name="conquer"; version="1.3.0"; sha256="1ynmaf7lgqjb8grsifx5dzy29cd5kz4x3yh0abnl2vxdr4c4wddc"; depends=[Matrix matrixStats Rcpp RcppArmadillo]; }; conquestr = derive2 { name="conquestr"; version="0.9.96"; sha256="1p0qbc3l557gwc3ch5d4fjj0p9s91j73dg6jl1syszm026zp6pc9"; depends=[dplyr ggplot2 ggrepel kableExtra magrittr Rcpp rlang stringr tidyr tidyselect]; }; @@ -7591,16 +7401,15 @@ in with self; { consortr = derive2 { name="consortr"; version="0.9.1"; sha256="1c71wvr7sckrv4k65l71l160z6d9amzyydbi6mf2b79zh9zv8g1g"; depends=[data_table DiagrammeR dplyr magrittr purrr rlang shiny shinydashboard tibble]; }; constants = derive2 { name="constants"; version="1.0.1"; sha256="11nliijwphqphik95b3xpawpjg7w4s089wdhjci5bw4va4bgd1xm"; depends=[]; }; constellation = derive2 { name="constellation"; version="0.2.0"; sha256="1d49rnyf2z3bvx158nsmgmb0x7xcgxl9f8y98pwg5wlqck7af99q"; depends=[data_table]; }; - constrainedKriging = derive2 { name="constrainedKriging"; version="0.2.4"; sha256="1a91s0b7yka37fb5pm172fmlqrhm6da370cqb9knvkg5n8vi4hys"; depends=[RandomFields rgeos sp spatialCovariance]; }; + contFracR = derive2 { name="contFracR"; version="1.0"; sha256="115gx38lqf2059fr76xyms2kzjqkg6g7inmfdh7a0c9qn4xjhk3q"; depends=[gmp go2bigq Rmpfr]; }; contTimeCausal = derive2 { name="contTimeCausal"; version="1.0"; sha256="1lyiy0hs5xms6hgr7cv5cxh7v09612qsknjwmrr8w07y0h37qg5l"; depends=[dplyr survival zoo]; }; contact = derive2 { name="contact"; version="1.2.8"; sha256="1db3vgjlz0ivw3sx37mwy7ngjx0in3rxlm3i3akh4xzbfp9gjj87"; depends=[ape data_table doParallel foreach igraph lubridate raster rgdal rgeos sp]; }; contactdata = derive2 { name="contactdata"; version="0.2.0"; sha256="1hcibqkfisv28d38ymgvmkkbs4jl3lbp2safyd5abf185043263d"; depends=[]; }; container = derive2 { name="container"; version="1.0.1"; sha256="0a8wlszclnl2hm15mgrq25mkq13x890qv2mg9rqx8ns7953829sa"; depends=[data_table R6]; }; contentid = derive2 { name="contentid"; version="0.0.15"; sha256="0r5lrq82vfv698g8md8kdhl83gi8rx5hrhk2qddykxlxk4krzagi"; depends=[curl fs httr openssl]; }; contfrac = derive2 { name="contfrac"; version="1.1-12"; sha256="0sq5c7ny235yrkv2xc4insgxby6rvzc1qsj8h301cd2if3lwbgwm"; depends=[]; }; - conting = derive2 { name="conting"; version="1.7"; sha256="08f271j3gxcp4shda08kkv0v9ayaadvxgcglfsn6hjmw4hn298zg"; depends=[BMS coda gtools mvtnorm tseries]; }; contingency = derive2 { name="contingency"; version="0.0.6"; sha256="0bwvrwsa41s24j612w4jyhlfp2r6qa37ljsb3lxx27mkd9r0286d"; depends=[rje]; }; - contingencytables = derive2 { name="contingencytables"; version="1.0.0"; sha256="0xpc5x90cvxfhg0aybrrqyg7ar29jbswpinnq07pfg9d6kycrlgm"; depends=[boot MASS]; }; + contingencytables = derive2 { name="contingencytables"; version="1.0.1"; sha256="0dnhc2jhhjsb6jbw92py62s84f6n72sz5if95s9svdrz2nyy2nkb"; depends=[boot MASS]; }; contourPlot = derive2 { name="contourPlot"; version="0.2.0"; sha256="0bjwq3p57d6hadln8vwjkh7c9sbb466h3zcq9kpx7kd31z6x8gnz"; depends=[interp RColorBrewer]; }; contoureR = derive2 { name="contoureR"; version="1.0.5"; sha256="1izq1alkf24zd2sf2ir2adyrkwhdj7n89cv6z0dfh5mfqld5bkdn"; depends=[geometry plyr Rcpp reshape]; }; contrast = derive2 { name="contrast"; version="0.24.1"; sha256="1119c7p8ly3zb5pxzgridqvmbq5v0jx557qqaa0rbmdr7rih74aq"; depends=[nlme rms sandwich]; }; @@ -7614,7 +7423,7 @@ in with self; { convertr = derive2 { name="convertr"; version="0.1"; sha256="1y9aq5in2qv1323amblmq3g22flpqvpkgkrw12kahg56mqf2b3iq"; depends=[DT miniUI rstudioapi shiny]; }; convevol = derive2 { name="convevol"; version="1.3"; sha256="1b0lygbrdm6rqascck5iwjnm248lklc4cxr71qlgand5jsblpcnn"; depends=[ape cluster geiger MASS phytools]; }; convexjlr = derive2 { name="convexjlr"; version="0.8.1"; sha256="1x2ra1xcyd7bvc7wq49wpihh0g9ygh1bq5214vvrhfrjfjifvlaw"; depends=[JuliaCall magrittr]; }; - convey = derive2 { name="convey"; version="0.2.4"; sha256="0khhnvazslvv7ma4fk70qzcazgv1aair1vcvx22bsic2mvgdb0fc"; depends=[survey]; }; + convey = derive2 { name="convey"; version="0.2.5"; sha256="0vji97sip7p2xpbd3mhx2a6aw46zjky561rypa3hb8xpag16fna5"; depends=[survey]; }; convoSPAT = derive2 { name="convoSPAT"; version="1.2.7"; sha256="1pmiirigjdkrb3pzqcw6qlh6418z384mvaxqw5mrcm1gxzrqp649"; depends=[ellipse fields MASS plotrix StatMatch]; }; cooccur = derive2 { name="cooccur"; version="1.3"; sha256="1wlaghhi4f3v8kzwhcgq3c6as7v3zlpkzhb232qz1amr7f0058kv"; depends=[ggplot2 gmp reshape2]; }; cooltools = derive2 { name="cooltools"; version="1.7"; sha256="147hpa1vavs51fp0r8siyf0g3830g5ngs1nwd5a4nrahzl6f1jn4"; depends=[bit64 celestial cubature data_table jpeg magicaxis MASS plotrix png pracma raster Rcpp sp]; }; @@ -7642,7 +7451,6 @@ in with self; { coreCT = derive2 { name="coreCT"; version="1.3.3"; sha256="18id8vf3saj71lxr0i85s9sfhfxmk5x9bihg4m6fz3i9y1akbvq6"; depends=[igraph oro_dicom plyr raster]; }; coreNLP = derive2 { name="coreNLP"; version="0.4-2"; sha256="0rvyqj7s3lijq4rzil65060b29m393m7zmg99mykp1g1kby5bjd8"; depends=[rJava XML]; }; coreSim = derive2 { name="coreSim"; version="0.2.4"; sha256="1fhlss420rhs21l9i2ag5g3j0vnrkpqdh13ca4rwfan6h35qr3sm"; depends=[dplyr MASS]; }; - coreTDT = derive2 { name="coreTDT"; version="1.0"; sha256="14rnh61gk3m6g8rq77hm9ybds0px15di2mxm3jiyfdfynx5ng58f"; depends=[]; }; corehunter = derive2 { name="corehunter"; version="3.2.1"; sha256="0cxvhmi768kz3q8hydb6y9nqvc8hvkmq8nc5yfry4k94whk12wax"; depends=[naturalsort rJava]; }; corels = derive2 { name="corels"; version="0.0.4"; sha256="1ygbvhnz304y4y708ygr4x6kbwv7bfpjd5hhcrcc6lma59h7arfn"; depends=[Rcpp]; }; corkscrew = derive2 { name="corkscrew"; version="1.1"; sha256="1nb81r4lsrajcj3xz3f7p6xznnb38yg3rnnh44rd3kabca4d8r1s"; depends=[ggplot2 gplots igraph RColorBrewer]; }; @@ -7655,9 +7463,9 @@ in with self; { coronavirus = derive2 { name="coronavirus"; version="0.3.31"; sha256="187k5phjxkzkkgszrww0ayk50n399bxa83r59h3whk81788hdmwf"; depends=[devtools]; }; corpcor = derive2 { name="corpcor"; version="1.6.10"; sha256="028fw61n61i79fhnaqx7gmdifdpbvp3yiaq9vvfrbv4k7i84r83i"; depends=[]; }; corpora = derive2 { name="corpora"; version="0.5-1"; sha256="1bkmarwxqfb4jf7aa1x82lhykmy25z1pknfmq1g1g789g074090k"; depends=[]; }; - corporaexplorer = derive2 { name="corporaexplorer"; version="0.8.4"; sha256="0ffickzig9798273gm401ma0lm32zgcd5p549935gfgbyjlxzxps"; depends=[data_table dplyr ggplot2 lubridate magrittr padr plyr RColorBrewer rlang rmarkdown scales shiny shinydashboard shinyjs shinyWidgets stringi stringr tibble tidyr]; }; + corporaexplorer = derive2 { name="corporaexplorer"; version="0.8.5"; sha256="0zd1jdb6x1rwrlr9ic7jbsw0dm1w2jcip3zhdqwqmi5s37m8qx64"; depends=[data_table dplyr ggplot2 lubridate magrittr padr plyr RColorBrewer re2 rlang rmarkdown scales shiny shinydashboard shinyjs shinyWidgets stringi stringr tibble tidyr]; }; corpus = derive2 { name="corpus"; version="0.10.2"; sha256="0fxa38xbd5fyhh0q1ycx8snj7ly8hv9jclbs77agkb6pb6p7yr64"; depends=[utf8]; }; - corpustools = derive2 { name="corpustools"; version="0.4.9"; sha256="0239nx4r8q3jkzymr3l2zc9y0b75frp7rxn2wl6rv721p33dbykr"; depends=[data_table digest igraph Matrix pbapply quanteda R6 Rcpp RcppProgress RNewsflow rsyntax SnowballC stringi tokenbrowser udpipe wordcloud]; }; + corpustools = derive2 { name="corpustools"; version="0.4.10"; sha256="1c3kr5vfa9n02741s63wmr6vmz37sn5qqcniy8gywfrmhwzlgk8a"; depends=[data_table digest igraph Matrix pbapply quanteda R6 Rcpp RcppProgress RNewsflow rsyntax stringi tokenbrowser udpipe wordcloud]; }; corr2D = derive2 { name="corr2D"; version="1.0.2"; sha256="1g8vxqbyp162a9jm4dwhyviifddddri585xn42gd6gwfx0vzmaji"; depends=[colorspace doParallel fields foreach mmand profr xtable]; }; corrDNA = derive2 { name="corrDNA"; version="1.0.1"; sha256="1mfjrzpcb63ydyj1yxa0wd3vh4z0rdwsqv09w0a0l4l7mhb5jz2k"; depends=[mvtnorm]; }; corrarray = derive2 { name="corrarray"; version="1.2.0"; sha256="1hsk425xjz9p3wwvia7h78dg24qsr5r977xm2ap5z40ah1bw7bzi"; depends=[Hmisc]; }; @@ -7671,7 +7479,7 @@ in with self; { corrgrapher = derive2 { name="corrgrapher"; version="1.0.4"; sha256="0s10n2av6dyjz6x4wvznpcbvpp63v6k3r9whkqsg7fiy9m3d4dr9"; depends=[ggplot2 htmltools ingredients knitr visNetwork]; }; corrplot = derive2 { name="corrplot"; version="0.92"; sha256="1g98jk6xsl08z4n6sy5vriif99m31zhbz7j3dh1kfj4w7yb9zh78"; depends=[]; }; corrr = derive2 { name="corrr"; version="0.4.3"; sha256="096j9y1i1g7wgvn15vpil63cnb24mm0fgklbsgygwwgnlx2j0rgg"; depends=[dplyr ggplot2 ggrepel purrr rlang seriation tibble]; }; - corrsieve = derive2 { name="corrsieve"; version="1.6-8"; sha256="0ak3j9khcwv5rxbicck2sr260wpmd3xj254y7pdavx2fk0b72yxs"; depends=[]; }; + corrsieve = derive2 { name="corrsieve"; version="1.6-9"; sha256="0v8338j2x9prf3fysp4yzd6x34zjmp4yyiaar6ck1wgcfprk2dd4"; depends=[]; }; corset = derive2 { name="corset"; version="0.1-4"; sha256="0ladyqvkys4cldvbhkii9jwn1k5p1ym2g5bgdlz1hq1sv30ixn2f"; depends=[]; }; cort = derive2 { name="cort"; version="0.3.2"; sha256="1iayvgwjmpmb96w5841jxhwivca7s4v5bpsdy0lrbk121saqq5z1"; depends=[furrr nloptr osqp purrr Rcpp Rdpack]; }; corto = derive2 { name="corto"; version="1.1.10"; sha256="1vddp42klrji8qfccdrfwppk657aa46crs65mvbpcj9wss7zj2ng"; depends=[dplyr gplots knitr pbapply plotrix rmarkdown]; }; @@ -7680,7 +7488,7 @@ in with self; { cosinor = derive2 { name="cosinor"; version="1.1"; sha256="02nnqg51vq48lzk667cyarnmhcf5mifnsdij7dlgqvz2k4fdq4pl"; depends=[ggplot2 shiny]; }; cosinor2 = derive2 { name="cosinor2"; version="0.2.1"; sha256="1pp0z86fflqkkllfrzx3vj98kzxjwnawr4a2d8z5q6zhq6v5qrvf"; depends=[cosinor cowplot ggplot2 Hmisc magrittr matrixStats purrr scales stringr]; }; cosmicsig = derive2 { name="cosmicsig"; version="1.0.7"; sha256="1xixcbnqrsh5mbs9inpddcghlz5r6i3sp94rh6z53bwzggn3dzxl"; depends=[]; }; - cosmoFns = derive2 { name="cosmoFns"; version="1.0-1"; sha256="0a6xhbgxxnymlvicg99yhgny2lscxcbmvqmy17kxmahdi797dsg6"; depends=[]; }; + cosmoFns = derive2 { name="cosmoFns"; version="1.1-1"; sha256="0py0wmdpxk8ldq1wbwg4x1hxkjblar83x3ya30n4377d4lbc3xb7"; depends=[]; }; cosso = derive2 { name="cosso"; version="2.1-1"; sha256="1wyq27qak0kz4bbzynm24r5ksvb6ddd43h2ykh6m935xck16blyb"; depends=[glmnet quadprog Rglpk]; }; costat = derive2 { name="costat"; version="2.4"; sha256="0c47bklqjgjmdglw3mi9lvygwjr5w6i1zv91ll3vpnl5dnay0692"; depends=[wavethresh]; }; costsensitive = derive2 { name="costsensitive"; version="0.1.2.10"; sha256="192q55123yzcjjh4047ppxa3h7gk9afqnvm1nlhzs4ccqz71g411"; depends=[]; }; @@ -7694,8 +7502,7 @@ in with self; { countdata = derive2 { name="countdata"; version="1.2"; sha256="1yx75x4yg5ysx9zjzd4g5bd0qn11ngdsw1k36k809rd68v690awr"; depends=[]; }; countfitteR = derive2 { name="countfitteR"; version="1.4"; sha256="1aq7v2fy24pf3r6fkmcwvs18r2xc2l1bqablp53xfc7b6kxq3vqn"; depends=[ggplot2 MASS pscl shiny]; }; countgmifs = derive2 { name="countgmifs"; version="0.0.2"; sha256="0k6fjg0v9n7vi89wd025gdjh1q3l6nnc5yn8i2bfw0i5vmv8rhi3"; depends=[MASS]; }; - countrycode = derive2 { name="countrycode"; version="1.3.1"; sha256="1hfw0084f82v4xy2lc88iwxlk0c8vaiybvrx6asadh0922y577aj"; depends=[]; }; - countyfloods = derive2 { name="countyfloods"; version="0.1.0"; sha256="0ld8p8dfk9khvwffbn8sad0j3an25s7cvbi6jxljgx4zc6ldh699"; depends=[dataRetrieval dplyr ggplot2 lubridate maps plyr R_utils tidyr]; }; + countrycode = derive2 { name="countrycode"; version="1.4.0"; sha256="1i6czp2x3q2ksmaqajbnhkggv8z7cc0hpb4g1yg1nqqy5ijygpwr"; depends=[]; }; covBM = derive2 { name="covBM"; version="0.1.0"; sha256="0ky1lhr8m4hy2ss1nr2xymf6cmj1rr8px8zsxna6bsisf5bq4j4w"; depends=[nlme]; }; covLCA = derive2 { name="covLCA"; version="1.0"; sha256="15jsjrlaws1cqyrwvh4lzbhxkb11jmgpmddg98nfrzmjpczn2iw3"; depends=[Matrix mlogit poLCA]; }; covRobust = derive2 { name="covRobust"; version="1.1-3"; sha256="0zcfala4l0j4w0sx5hlw40vxiypans3d7pgkxy25nj0d2m1jkvba"; depends=[]; }; @@ -7723,7 +7530,7 @@ in with self; { covr = derive2 { name="covr"; version="3.5.1"; sha256="0v5cv3cw2kpdr6wxmkbd3wclavr17zipypdcb10hhmpa4cvgqk55"; depends=[crayon digest httr jsonlite rex withr yaml]; }; covreg = derive2 { name="covreg"; version="1.0"; sha256="0v19yhknklmgl58zhvg4szznb374cdh65i7s8pcj2nwrarycwzaq"; depends=[]; }; covsep = derive2 { name="covsep"; version="1.1.0"; sha256="19dvwhl85yx9ddwxvnq5sdd534s6llcw61gckrav48hq49x1bqld"; depends=[mvtnorm]; }; - covsim = derive2 { name="covsim"; version="0.2.1"; sha256="1gqk5wqbcn8hkznpwxw2a3hrbwfpzn3ynidpg182kashd4683jjp"; depends=[gsl lavaan MASS Matrix nleqslv PearsonDS Rcpp rvinecopulib tmvtnorm]; }; + covsim = derive2 { name="covsim"; version="1.0.0"; sha256="0kzlqdhx67hfm0f53yb438qfi4vlcf2j3cpyj2r49zgpwwgfk21p"; depends=[gsl lavaan MASS Matrix nleqslv PearsonDS Rcpp rvinecopulib tmvtnorm]; }; cowbell = derive2 { name="cowbell"; version="0.1.0"; sha256="1zz0g30zvqfk5lh09y90iq3s7x2wwbs852i3d56mfp926gxdxc2y"; depends=[ggplot2 misc3d rgl]; }; cowplot = derive2 { name="cowplot"; version="1.1.1"; sha256="0j7d5vhzdxn1blrsfafx5z8lhq122rp8230hp9czrpsnnhjydp67"; depends=[ggplot2 gtable rlang scales]; }; cowsay = derive2 { name="cowsay"; version="0.8.0"; sha256="12hximrdpikkczpwqjmah11nbwzyf7j1x7zcxa7igqwq8nfgv2yv"; depends=[crayon fortunes rmsfact]; }; @@ -7740,11 +7547,10 @@ in with self; { cp4p = derive2 { name="cp4p"; version="0.3.6"; sha256="1zddkkj0ynvfck3kw1682wffbxw0d3dc4flmxxp03lclq70fc8bd"; depends=[limma MESS multtest qvalue]; }; cpa = derive2 { name="cpa"; version="1.0"; sha256="14kcxayw4cdbjfa6bvfzqp8flwc0sr3hmh2dnr1dfax0hnccd71m"; depends=[]; }; cpca = derive2 { name="cpca"; version="0.1.2"; sha256="1pccsjahb1qynnxa0akhfpcmhfmdg4rd1s6pfqrdl7bwbcmq4lqf"; depends=[]; }; - cpd = derive2 { name="cpd"; version="0.1.0"; sha256="1qcyb7n69ppa0py7w31msim7gf2wdh94hmsilsdk8ivxljc1gv8n"; depends=[fAsianOptions Rdpack]; }; - cpfa = derive2 { name="cpfa"; version="1.0-0"; sha256="06aiq9zq4471hajzca15vs79nwsk4q3bbi5fh6vz0qra50i64ang"; depends=[doParallel e1071 foreach glmnet multiway randomForest]; }; + cpfa = derive2 { name="cpfa"; version="1.0-1"; sha256="1ha98ggqysvr38p98lsrn8fk9lnnryybab9cch62vvj3vyb07m50"; depends=[doParallel e1071 foreach glmnet multiway nnet randomForest]; }; cpi = derive2 { name="cpi"; version="0.1.4"; sha256="1gz92jcl8wg2vp8qhnkn37l2xs8wjdbjvnga22v9n943k9zsk2kh"; depends=[foreach knockoff lgr mlr3]; }; cpk = derive2 { name="cpk"; version="1.3-1"; sha256="1njmk2w6zbp6j373v5nd1b6b8ni4slgzpf9qxn5wnqlws8801n73"; depends=[]; }; - cplm = derive2 { name="cplm"; version="0.7-9"; sha256="057m61rq2hzb55imj3922zmc9kjxh053k3kgy54a4l0jlxb90lyj"; depends=[biglm coda ggplot2 Matrix minqa nlme reshape2 statmod tweedie]; }; + cplm = derive2 { name="cplm"; version="0.7-10"; sha256="0mqjk10265hq9bc5ihmgbx1l8fzay1gpdlvx3pirqmvr3w1kwlxk"; depends=[biglm coda ggplot2 Matrix minqa nlme reshape2 statmod tweedie]; }; cplots = derive2 { name="cplots"; version="0.5-0"; sha256="12nac8hywhsfh2fcv30w36la46hvvp5mwc2rrq34smraig0dq8f3"; depends=[circular]; }; cpm = derive2 { name="cpm"; version="2.3"; sha256="07zbvc5jkwv76lkzby6r073fxjsqgnrdl2w9lcph577knnip89jx"; depends=[]; }; cpop = derive2 { name="cpop"; version="1.0.0"; sha256="08f3a1pcgcdkn7lxvvrlkajjy38i8v5q071gp7vwvvd71146sjih"; depends=[crops ggplot2 mathjaxr pacman Rcpp Rdpack]; }; @@ -7780,7 +7586,7 @@ in with self; { credsubs = derive2 { name="credsubs"; version="1.1.1"; sha256="19l3vsjxd9lvaf67l61x9l0j4y124p93dfqzw7rl1ya5sxbdzs7a"; depends=[]; }; credule = derive2 { name="credule"; version="0.1.4"; sha256="0kwjjkavch21grx845kdcansaj0g407v7z3wmhy4whra9ic12y76"; depends=[]; }; cregg = derive2 { name="cregg"; version="0.4.0"; sha256="1a34jhdk4r9ywsrc5dc8wq5am3059cli60f6n2n8j04ls13fvlkd"; depends=[ggplot2 ggstance lmtest sandwich scales survey]; }; - crestr = derive2 { name="crestr"; version="1.0.0"; sha256="1vps3rf2mnzmfzml22cyvi7khgakjx6yzwiziyjdl8dalrhrpwsc"; depends=[clipr DBI plyr raster rgdal rgeos RPostgres scales sp stringr viridis]; }; + crestr = derive2 { name="crestr"; version="1.0.2"; sha256="0q3x7zxslsl7yjrzgvw633yrr7gqz2bk3mkrfkv5dplqf027qnps"; depends=[clipr DBI plyr raster rgdal rgeos RPostgres scales sp stringr viridis]; }; crfsuite = derive2 { name="crfsuite"; version="0.4"; sha256="0arxbszaf1y8cqgzbq9a5l58n3c3rhjfp78lnhdxg95cdmdzhcfd"; depends=[data_table Rcpp]; }; cricketdata = derive2 { name="cricketdata"; version="0.1.1"; sha256="1xv85mkln539jp9r7p8gnigiyrwwppi3ska3yjcjbzrl617w0877"; depends=[dplyr lubridate magrittr progress readr rvest stringr tibble tidyr xml2]; }; cricketr = derive2 { name="cricketr"; version="0.0.26"; sha256="1y1zf9f59v95knggq5nna5rp7fqpv1swwvkajwqbpicc12g2azq4"; depends=[dplyr forecast ggplot2 httr lubridate plotrix scatterplot3d XML]; }; @@ -7790,13 +7596,12 @@ in with self; { crimeutils = derive2 { name="crimeutils"; version="0.3.0"; sha256="1g7na36k1na7bsq8xqi01ja2fpb09r2davpi56jn5k1lih93kp8k"; depends=[dplyr ggplot2 gridExtra gt magrittr readr rlang scales tidyr]; }; crisp = derive2 { name="crisp"; version="1.0.0"; sha256="1gs8jnd9y9pd55w6kwv9mvmg3wd8hjiw3lwx7k242pxccsxklfxq"; depends=[MASS Matrix]; }; crispRdesignR = derive2 { name="crispRdesignR"; version="1.1.6"; sha256="1h9153iv55qkx9hyf3gs118m99mkzj5mbj6i3jg58chfp0m6jx78"; depends=[BiocGenerics Biostrings DT gbm GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors shiny stringr vtreat]; }; - criticality = derive2 { name="criticality"; version="0.9.1"; sha256="1bi2h56bbrbjybawrxjm724i2rcpla0rmlcf5vp3g5qfmcc4cz15"; depends=[bnlearn caret dplyr evd fitdistrplus ggplot2 keras magrittr reticulate scales]; }; + criticality = derive2 { name="criticality"; version="0.9.2"; sha256="0177dx8y93gg37244615y17lidk7hmji5k1dlrm3670flfnigf28"; depends=[bnlearn caret dplyr evd fitdistrplus ggplot2 keras magrittr reticulate scales]; }; criticalpath = derive2 { name="criticalpath"; version="0.2.1"; sha256="1b8iwvdlq5czd7p7yy6il3irrcarc23cy26vprycnyjll38lcfjz"; depends=[dplyr igraph magrittr R6 stringr tibble]; }; critpath = derive2 { name="critpath"; version="0.1.4"; sha256="1jr5ra8gwzcfnap87z4snb5mmfqq2iaas2x54kqqcsb2gsk3gchs"; depends=[DiagrammeR ggplot2 reshape2]; }; - crmPack = derive2 { name="crmPack"; version="1.0.0"; sha256="11zy1ci9d0zjbmc0gws9j9qrnfcqvky1ws9p41wjn0zifcckc5gi"; depends=[GenSA ggplot2 gridExtra MASS mvtnorm rjags]; }; + crmPack = derive2 { name="crmPack"; version="1.0.2"; sha256="1nxy4q4w6hv6s67wcql68szqv2wcdikyx73aiyvc9xka3j1k8n11"; depends=[GenSA ggplot2 gridExtra MASS mvtnorm rjags]; }; crmReg = derive2 { name="crmReg"; version="1.0.2"; sha256="0y6xb0sxhsqcmcwbkwvk70snwqhxgzl513ld9dp53cm88qdwaj1r"; depends=[FNN ggplot2 gplots pcaPP plyr robustbase rrcov]; }; crmn = derive2 { name="crmn"; version="0.0.21"; sha256="0wp99fsw7y859gp1x22f77r9rv1m0xspbzhzgshzf7hi86xb57k5"; depends=[Biobase pcaMethods]; }; - crn = derive2 { name="crn"; version="1.1"; sha256="1fw0cwx478bs6hxidisykz444jj5g136zld1i8cv859lf44fvx2d"; depends=[chron RCurl]; }; crochet = derive2 { name="crochet"; version="2.3.0"; sha256="0zvjaf6cv0nrjb4l4llkr0mmgha7ig31p4ri2rlnqyjlxi5l8hyq"; depends=[]; }; cromwellDashboard = derive2 { name="cromwellDashboard"; version="0.5.1"; sha256="0d57c1wdd1ds9fr7p256la63qbv8mirljgrvl1k8fp5gcnkps5wb"; depends=[dplyr DT httr shiny shinydashboard stringr]; }; cronR = derive2 { name="cronR"; version="0.6.2"; sha256="1w1100lapy3zi238nmh2vc7yadqvb8p3wz86k223bqgr6lia28ng"; depends=[digest]; }; @@ -7812,7 +7617,8 @@ in with self; { crossdes = derive2 { name="crossdes"; version="1.1-2"; sha256="0nc9jd83mm03qpd3r3hfmrf615yvvmib9kk9dh1hgz12pxhffray"; depends=[AlgDesign gtools]; }; crossmap = derive2 { name="crossmap"; version="0.3.0"; sha256="0dw1sg1by5805l72s5sbldznyp9qph9qrm4sizvqdx74bhb59s1y"; depends=[backports broom dplyr purrr rlang]; }; crossmatch = derive2 { name="crossmatch"; version="1.3-1"; sha256="082lrv2129mfhwlh99z3g8id3a29s8854skl152bl3ig8pk2gbjz"; depends=[nbpMatching survival]; }; - crossrun = derive2 { name="crossrun"; version="0.1.0"; sha256="0br57nraqhs5f1cpidc8kd31izm82wvhiw9pxcdj9v51l9vifbmx"; depends=[Rmpfr]; }; + crossnma = derive2 { name="crossnma"; version="1.0.1"; sha256="0zcgz87knshvn5sifk30jmmx8kiaqsxrfj0d39wzbx5yxifi21l9"; depends=[coda dplyr ggplot2 magrittr netmeta plyr rjags rlang tidyr]; }; + crossrun = derive2 { name="crossrun"; version="0.1.1"; sha256="1v2khjb77g63ls6s15z9hy81z4hyf89g58jxjl94jrkznq1c4fa4"; depends=[Rmpfr]; }; crosstable = derive2 { name="crosstable"; version="0.4.1"; sha256="1c3hzmm8s72qsppzh8z3ivf88hlx571jz1pymrzppdikxm9z013h"; depends=[checkmate dplyr flextable forcats glue lifecycle officer purrr rlang stringr tibble tidyr tidyselect]; }; crosstalk = derive2 { name="crosstalk"; version="1.2.0"; sha256="180y7mhpj17axpadwhh7s0qvrpdnag7g977vk256l96d6nmvlds2"; depends=[htmltools jsonlite lazyeval R6]; }; crossval = derive2 { name="crossval"; version="1.0.4"; sha256="0vshlyc6w4kfs03n56ylapiqgdyday7068wmfsphj4lhw322s4yp"; depends=[]; }; @@ -7820,11 +7626,10 @@ in with self; { crosswalkr = derive2 { name="crosswalkr"; version="0.2.6"; sha256="1rxd6vy7vdrawmg7zkydl1f2wwklnzgh9dsnxbg966xrr3l9x1n9"; depends=[haven labelled readr readxl tibble]; }; crossword_r = derive2 { name="crossword.r"; version="0.3.6"; sha256="1s31613s4qxxspka9bhgq3rq8xraf48mwfv6phvz6v06gijh64lr"; depends=[dplyr jsonlite magrittr R6 r6extended stringr]; }; crov = derive2 { name="crov"; version="0.2.0"; sha256="1i3a5nagzinsla6p3wjyj3x12gyfqs6vapaqxgr3dh6m727jw5i5"; depends=[gtools VGAM]; }; - crplyr = derive2 { name="crplyr"; version="0.3.8"; sha256="0vfr8pdxpcmfslv7kn0jhcxjxkhhsqhy729h6v22bazp56zam08v"; depends=[crunch dplyr ggplot2 httptest lazyeval lifecycle purrr rlang scales stringr tibble tidyselect viridisLite]; }; - crqa = derive2 { name="crqa"; version="2.0.2"; sha256="0dg2aqc4dc27chwqym23r2ajqk4vjgi73qdv6i4zmra4rf4s0md5"; depends=[FSA gplots Matrix plot3D pracma rdist tseriesChaos]; }; + crplyr = derive2 { name="crplyr"; version="0.3.9"; sha256="0bykmh1jl84ay5hm01vpragy9cvl1i1y79hn962qd6a2w27fryj4"; depends=[crunch dplyr ggplot2 httptest lazyeval lifecycle purrr rlang scales stringr tibble tidyselect viridisLite]; }; + crqa = derive2 { name="crqa"; version="2.0.3"; sha256="02cz52gmq4x9xhzsv26babp4z1z6dcy7j8az7xbr6m0d8f09kq9s"; depends=[FSA gplots Matrix plot3D pracma rdist tseriesChaos]; }; crrSC = derive2 { name="crrSC"; version="1.1"; sha256="171cw56q2yv1vb4qd0va75i2q89jcw1126q8pcbv0235g7p2a86z"; depends=[survival]; }; crrcbcv = derive2 { name="crrcbcv"; version="1.0"; sha256="1rbmhnr7n99i0277d47i62ww6896z1g20v6vr558zmx3gvrs0b6k"; depends=[abind crrSC pracma survival]; }; - crrp = derive2 { name="crrp"; version="1.0"; sha256="1fq54jr6avrli91a4z1hp5img4kghyw1yvjr5xyccsanf9i35x8r"; depends=[cmprsk Matrix survival]; }; crrstep = derive2 { name="crrstep"; version="2015-2.1"; sha256="03vd97prws9gxc7iv3jfzffvlrzhjh0g6kyvclrf87gdnwifyn1z"; depends=[cmprsk]; }; crs = derive2 { name="crs"; version="0.15-34"; sha256="0k4sd1821h4j7hrn3jk66m6n34rj5hp212gj0ff3psxgfmxybxrp"; depends=[boot np quantreg]; }; crseEventStudy = derive2 { name="crseEventStudy"; version="1.2.2"; sha256="0zqqd1d1k200kah03qvpfiyshs18s5h4j8y9mwr0fbhkfj7xags7"; depends=[sandwich]; }; @@ -7835,7 +7640,7 @@ in with self; { crsuggest = derive2 { name="crsuggest"; version="0.3.1"; sha256="13h6hfj3bvdb5wzq1f2m5s9crjmg0ijhfh87y1dmyimv76kr31k6"; depends=[dplyr mapview purrr sf units]; }; crtests = derive2 { name="crtests"; version="0.2.1"; sha256="0z8idz37dgwvi1q2vryldii7fn9yxd32gds77ml76jfplxbkikpd"; depends=[caret plyr stringr]; }; crul = derive2 { name="crul"; version="1.2.0"; sha256="133g0skz4lifl8hm8pqdryd2m2drbrm6mdfzbbsrw8fg46di86my"; depends=[curl httpcode jsonlite mime R6 urltools]; }; - crunch = derive2 { name="crunch"; version="1.29.1"; sha256="04zl3zzdv5ab9aa811pb4p6rdgjiia6jhrjm5knw53shzgn2d84y"; depends=[abind crayon curl httpcache httr jsonlite]; }; + crunch = derive2 { name="crunch"; version="1.30.0"; sha256="0ysk4hpymkby80j8snyziqigsr4nda8zm3b8frxmvk42psy7m7hh"; depends=[abind crayon curl httpcache httr jsonlite]; }; crunchy = derive2 { name="crunchy"; version="0.3.3"; sha256="15w72kmizsxkj1wx3nqny6329m2041mxyzi4nxh8l3hfmaisb4qm"; depends=[crunch httpcache miniUI rstudioapi shiny]; }; cruts = derive2 { name="cruts"; version="1.1"; sha256="1ih6h9qk4yflzars00d61smjqj7s4bfvc2ikp6vlki9f6k012xcx"; depends=[lubridate ncdf4 raster sp stringr]; }; cry = derive2 { name="cry"; version="0.4.1"; sha256="14wicmlg8vzrqv4wf5xzf37l29ch3cbglbanmgbqdi8p49jpw1cf"; depends=[zoo]; }; @@ -7867,7 +7672,7 @@ in with self; { ctf = derive2 { name="ctf"; version="0.1.0"; sha256="1vwqfh1y2if79rkpy6b0ay50fyis7h5rlpvhgikahnmcr2q5l14m"; depends=[iotools jsonlite]; }; ctgdist = derive2 { name="ctgdist"; version="0.1.0"; sha256="1m3ryppfvd984n5xfphjqhi9i1sigl17v897mqaichj21dzaq62f"; depends=[mirt]; }; ctgt = derive2 { name="ctgt"; version="2.0"; sha256="0g2ibk9pxay0idj55q0yh4vbdb6l6460r997fnapimn7fgyz6f66"; depends=[BH Rcpp]; }; - cthist = derive2 { name="cthist"; version="0.1.4"; sha256="1jxzxysyby8jx87hhan3cbihb5vb7269l5dn0i7wycxndp4kxinw"; depends=[dplyr httr jsonlite magrittr readr rlang rvest selectr stringr tibble]; }; + cthist = derive2 { name="cthist"; version="1.0.0"; sha256="18ji4bjcby237biawh6k8m0dxqmpilxq29gjlwfxnbzi6h65n8kl"; depends=[dplyr httr jsonlite magrittr polite readr rlang rvest selectr stringr tibble]; }; cthreshER = derive2 { name="cthreshER"; version="1.1.0"; sha256="18b66d08dq8pvnixmm4ir4r800b37z5yillaa88l317mdilbci9s"; depends=[Matrix]; }; ctl = derive2 { name="ctl"; version="1.0.0-7"; sha256="1a01rha6sgv8zmcfjb1c438s9d9bjzdjf2pmyml1m5jmz93q70ds"; depends=[MASS qtl]; }; ctmcd = derive2 { name="ctmcd"; version="1.4.1"; sha256="01nflgdyb70kh4f8bnxpavr31fz4fh02kgz2nlx3zzblnm2idbcx"; depends=[coda expm numDeriv Rcpp RcppArmadillo]; }; @@ -7876,14 +7681,14 @@ in with self; { ctmm = derive2 { name="ctmm"; version="0.6.1"; sha256="1c0pxjm91xcjdhq7mdjgmay9vs8cmk24495sf9g67hfjplf5gzzm"; depends=[Bessel data_table digest expm fasttime Gmedian gsl manipulate MASS numDeriv pbivnorm pracma raster rgdal shape sp statmod]; }; ctpm = derive2 { name="ctpm"; version="1.0.1"; sha256="1bycdh3mbimmfvv3yb50c8rwcmkbjj0jwnfiynsp2h56y3dmzc1r"; depends=[ape ClusterR ctmm slouch]; }; ctqr = derive2 { name="ctqr"; version="2.0"; sha256="0srrlgqxpp4a46wqr83zpb3xr49pf70b0n8bv9qp8ffak20d2hpj"; depends=[pch survival]; }; - ctrdata = derive2 { name="ctrdata"; version="1.9.0"; sha256="0p56zmn9sn38y8pasvmxy4vxfryq1v3qp58j7dibrz8hl325xz3x"; depends=[clipr curl dplyr httr jsonlite lubridate nodbi rvest stringi xml2]; }; + ctrdata = derive2 { name="ctrdata"; version="1.9.1"; sha256="1yhhq0hgan3yzrx5v1b0xjwjnwwy5ycf56lc7ihwdjgrzkab2zkj"; depends=[clipr curl dplyr httr jsonlite lubridate nodbi rvest stringi xml2]; }; ctrialsgov = derive2 { name="ctrialsgov"; version="0.2.5"; sha256="0hdh1fdfaja8amf7fkvk1c6yif703132bvacq0j9pk5jr97czgpw"; depends=[DBI dplyr ggplot2 htmlwidgets lubridate Matrix plotly purrr rlang stringi tibble]; }; ctrlGene = derive2 { name="ctrlGene"; version="1.0.1"; sha256="0x7j11v7jj4k1jml6lrnjq79awhrvsm3pig1yxsd337jlfml3ra9"; depends=[psych]; }; ctsem = derive2 { name="ctsem"; version="3.6.0"; sha256="08pxrlzqkl0vs3k67m88633g9hiwfyhsxicfyz290b7dj25gmyhq"; depends=[BH cOde data_table Deriv expm ggplot2 MASS Matrix mize mvtnorm pkgbuild plyr Rcpp RcppEigen RcppParallel rstan StanHeaders tibble]; }; ctsemOMX = derive2 { name="ctsemOMX"; version="1.0.4"; sha256="1sjsm573alsg3dvj58rwknqapcydx77zbs0b8hcf59qbbhfa3djv"; depends=[ctsem Matrix OpenMx plyr]; }; ctv = derive2 { name="ctv"; version="0.9-3"; sha256="0rwsiipnxjlj3pq97zh2hnbv1jigys32yl3zdp34x9z2xj3v4kg9"; depends=[]; }; - cuRe = derive2 { name="cuRe"; version="1.0.1"; sha256="0vw2iv9inz8md7lz6f1p456wxjc07kap1mvqf58hixqxbrb23dgi"; depends=[date numDeriv relsurv rstpm2 statmod survival]; }; cubature = derive2 { name="cubature"; version="2.0.4.4"; sha256="0sfmcy5xpa40w3qn0jbg7b802wksl5k8glz9jpx77n159wn3nyq8"; depends=[Rcpp]; }; + cubble = derive2 { name="cubble"; version="0.1.0"; sha256="1skmbyq3dl718iybdszzwisppmfp1h1rcwv74rrmf6dvjlkm51ii"; depends=[cli clipr dplyr geosphere ggplot2 glue lubridate ncdf4 pillar rlang sf stringr styler tibble tidyr tidyselect tsibble vctrs whisker]; }; cubelyr = derive2 { name="cubelyr"; version="1.0.1"; sha256="1g3pvam1fkqh63snibqcfaazvj7lrkfip8w9pjvwdclj0l8382kl"; depends=[dplyr glue pillar purrr rlang tibble tidyselect]; }; cubeview = derive2 { name="cubeview"; version="0.2.0"; sha256="1352hi2j9x9rx4iy3xvsca86nsh39x1vnymd17f5qc8c3plfm8db"; depends=[base64enc htmltools htmlwidgets lattice raster stars viridisLite]; }; cubfits = derive2 { name="cubfits"; version="0.1-4"; sha256="1dg60162s77p82v8vig52yl8ar8h0pijps8kqq35v1hvp5a3ny5q"; depends=[coda foreach]; }; @@ -7898,7 +7703,7 @@ in with self; { cuperdec = derive2 { name="cuperdec"; version="1.1.0"; sha256="1vvkbkb3dp38xzxxdm20n6vr8yifppn1clzzcvb2rhqk9d17cdiw"; depends=[dplyr ggplot2 magrittr readr rlang tidyr]; }; curephEM = derive2 { name="curephEM"; version="0.2.3"; sha256="0vn51v752acsr1vl65nixzdp0rchakgmrj2vz8krq66b3nys4wyw"; depends=[Matrix survival]; }; curl = derive2 { name="curl"; version="4.3.2"; sha256="0s55022hy8shjm1pzax1dqzrg20bv4nvlwnjnddk3dp89g5zmcch"; depends=[]; }; - currentSurvival = derive2 { name="currentSurvival"; version="1.0"; sha256="0bqpfwf4v4pb024a98qwg81m6zd7ljg1ps42ifhxpqx7b9gdyi6c"; depends=[cmprsk survival]; }; + currentSurvival = derive2 { name="currentSurvival"; version="1.1"; sha256="01rlm4n3qfa71wkd6pbkdhcgll0y13zrcbjqxy0gssvrgnwwcfsx"; depends=[cmprsk survival]; }; curry = derive2 { name="curry"; version="0.1.1"; sha256="1ps9hvbnb02m0b8hlw4admwbziyjvswj08ldi2dk3ymnrpawcc29"; depends=[]; }; cursr = derive2 { name="cursr"; version="0.1.0"; sha256="08051bnxags2arn296mxwc84j55shhsfym9hd062amdvm23nxd18"; depends=[keypress]; }; curstatCI = derive2 { name="curstatCI"; version="0.1.1"; sha256="0igqdv0fzzji10gz3j3ir8qxpy7vdjfl137067rc28qzbrl2sy2c"; depends=[Rcpp]; }; @@ -7906,21 +7711,19 @@ in with self; { curvHDR = derive2 { name="curvHDR"; version="1.2-1"; sha256="1a6b29kklyphv9iirm8xaxcdfcssk7ah4wm9ll53ls0alnzb15nw"; depends=[feature geometry hdrcde KernSmooth ks misc3d ptinpoly rgl]; }; curveDepth = derive2 { name="curveDepth"; version="0.1.0.9"; sha256="10mhy2nyll4d1q71qnlsal0raccz3awd0j0vi5w58di9wlv1c241"; depends=[ddalpha Rcpp RcppArmadillo]; }; curvecomp = derive2 { name="curvecomp"; version="0.1.0"; sha256="0ykgbwnh32w61cjcg1nyqak42hx0jrsrpbra2wh3pgj9clg1qad2"; depends=[multcomp]; }; - cusp = derive2 { name="cusp"; version="2.3.3"; sha256="130m0is48bp11p5fpg17lwqwlavsa8fzfxjs0z62vl6lm006aahw"; depends=[]; }; customizedTraining = derive2 { name="customizedTraining"; version="1.2"; sha256="0kjp22bzv7a3xynhm9xmabfcms21586p8caz1nk1w88qdvidqfqd"; depends=[FNN glmnet]; }; - customsteps = derive2 { name="customsteps"; version="0.7.1.0"; sha256="1v6ks8j1mj623yai515xnrpx60hvilbrsn59r3zw30n68555cvw8"; depends=[dplyr generics magrittr purrr recipes rlang tibble tidyselect]; }; cusum = derive2 { name="cusum"; version="0.4.1"; sha256="0vjq3slkjdgls41xm637xkrg8jhv6y75xiyfcgpwrp32ixmakpcd"; depends=[checkmate data_table Rcpp]; }; cusumcharter = derive2 { name="cusumcharter"; version="0.1.0"; sha256="0ljprnn48nfl8n0zmvc547rcg4cwrfhq3zjkkimgdnf7z2d130q6"; depends=[data_table ggplot2 rlang]; }; cutoff = derive2 { name="cutoff"; version="1.3"; sha256="0anrvmlvcxah620il3fkq6ldp7hx4nwdnzcpmfc5mhlsry0lp178"; depends=[do ROCit set survival]; }; cutoffR = derive2 { name="cutoffR"; version="1.0"; sha256="1801jylmpp4msyf07rhg4153kky1zvi4v0kkjb9d51dc7zkhh531"; depends=[ggplot2 reshape2]; }; - cutpointr = derive2 { name="cutpointr"; version="1.1.1"; sha256="1lcs4dv13y9q6iwan7livlfaf5bqgg116br1knm4wk56jhxjaf4k"; depends=[dplyr foreach ggplot2 gridExtra purrr Rcpp rlang tibble tidyr tidyselect]; }; + cutpointr = derive2 { name="cutpointr"; version="1.1.2"; sha256="1qxnh20hs3bh9v04ls7gwwl7lfc6bwl8c88dn8lkcdqyp3nyr01j"; depends=[dplyr foreach ggplot2 gridExtra purrr Rcpp rlang tibble tidyr tidyselect]; }; cuttlefish_model = derive2 { name="cuttlefish.model"; version="1.0"; sha256="1rmkfyfd1323g2ymd5gi1aksp160cwy5ha5cjqh5r6fzd8hhqjxs"; depends=[]; }; cvAUC = derive2 { name="cvAUC"; version="1.1.4"; sha256="1m2y50a1yapf1c74km9a4r47ds2z2bfp4wwwkqin7swv9v1s7d28"; depends=[data_table ROCR]; }; - cvCovEst = derive2 { name="cvCovEst"; version="1.0.2"; sha256="138jhwy0dhnrvvxvnplhnqcrjdfdvqwb81605z1an4cbyxvgxyqi"; depends=[assertthat coop dplyr ggplot2 ggpubr Matrix matrixStats origami purrr RColorBrewer Rdpack rlang RSpectra stringr tibble]; }; + cvCovEst = derive2 { name="cvCovEst"; version="1.1.0"; sha256="1pdln88bzzhx8zwk553lj9nhb7vziczbjfjgpq917xdq930gdh10"; depends=[assertthat coop dplyr ggplot2 ggpubr Matrix matrixStats origami purrr RColorBrewer Rdpack rlang RMTstat RSpectra stringr tibble]; }; cvGEE = derive2 { name="cvGEE"; version="0.3-0"; sha256="085qjm520l2441nakfxy851s6bfy5832b5fy54z5fp4xr1jn6snm"; depends=[]; }; cvTools = derive2 { name="cvTools"; version="0.3.2"; sha256="0b7xb6dmhqbvz32zyfbdvm9zjyc59snic6wp1r21ina48hchn3sj"; depends=[lattice robustbase]; }; cvam = derive2 { name="cvam"; version="0.9.2"; sha256="0ylfs2ry1ppigvs7py71vbslxga1d3kaijzwr8v923f3j14zkm54"; depends=[coda Formula]; }; - cvap = derive2 { name="cvap"; version="0.0.3"; sha256="1n0cil51zgwv7c4xjxf78z67crida60r7qqp3pax74dbimddbsmj"; depends=[censable cli dplyr fs magrittr readr stringr tidyr]; }; + cvap = derive2 { name="cvap"; version="0.1.1"; sha256="1vrbbn0bfyl5spnbz7vq60vgvh787vwsk6awc510x7vrqzn4yyza"; depends=[censable cli dplyr fs magrittr purrr readr rlang stringr tidyr]; }; cvar = derive2 { name="cvar"; version="0.4-0"; sha256="1rfsmw2a639pkj8l5g2xm6z48jrxsywbysk7c0czpdvrh4h9h84f"; depends=[fGarch gbutils Rdpack]; }; cvcqv = derive2 { name="cvcqv"; version="1.0.0"; sha256="0327r4jw6m4avcz1zvdkxszqwaw2s9sh1i1jagl6aggd7aaiiyg0"; depends=[boot dplyr MBESS R6 SciViews]; }; cvcrand = derive2 { name="cvcrand"; version="0.1.0"; sha256="0zdf41sjqyi7mybxhypfx1vpc15w7qj9jg9bav64qbk0q5nk7jyc"; depends=[tableone]; }; @@ -7930,8 +7733,7 @@ in with self; { cvms = derive2 { name="cvms"; version="1.3.3"; sha256="0a0ajrdmx9zi57sl5k5pdh4adrif3da6vbhnqll573draknbhavd"; depends=[checkmate data_table dplyr ggplot2 lifecycle lme4 MuMIn parameters plyr pROC purrr rearrr recipes rlang stringr tibble tidyr]; }; cvq2 = derive2 { name="cvq2"; version="1.2.0"; sha256="19k95xg2y3wd4mx3wvbrc1invybd446g13vsp3dv05nw2kx4f6w8"; depends=[]; }; cvwrapr = derive2 { name="cvwrapr"; version="1.0"; sha256="17h017p76y7sjcwik48ravygmyivj6kvkhqy5s9ch0nwzzcrzvj3"; depends=[foreach survival]; }; - cwbtools = derive2 { name="cwbtools"; version="0.3.4"; sha256="1wj42n6phniwh6ms5xfmfazd8a0lkaf46wzv916i9xzsaf6hzqr7"; depends=[cli curl data_table fs httr jsonlite lifecycle pbapply R6 RcppCWB rstudioapi stringi xml2 zen4R]; }; - cwhmisc = derive2 { name="cwhmisc"; version="6.6"; sha256="1pf365g4f51cfrhlff9mqw2ddvkps0abax17zcn3vw1ba2djalnp"; depends=[lattice]; }; + cwbtools = derive2 { name="cwbtools"; version="0.3.5"; sha256="1kd0gz1b5bwyy88rhriyj9n8xcpj9wfr2gv4phcb2gk2dhwxl0il"; depends=[cli curl data_table fs httr jsonlite lifecycle pbapply R6 RcppCWB rstudioapi stringi xml2 zen4R]; }; cwm = derive2 { name="cwm"; version="0.0.3"; sha256="1ln2l12whjhc2gx38hkf3xx26w5vz7m377kv67irh6rrywqqsyxn"; depends=[MASS matlab permute]; }; cxhull = derive2 { name="cxhull"; version="0.5.0"; sha256="18f5x00z95iszbn5fl5qbbblp4fs0db9xs3mzy9s5y8kb52rsaxz"; depends=[Morpho rgl Rvcg]; }; cxr = derive2 { name="cxr"; version="1.0.0"; sha256="12rx7hna3h84a2xb2ir43xgb3zfmh0fhn5wcdjklk2g94dmwid28"; depends=[mvtnorm optimx]; }; @@ -7947,7 +7749,6 @@ in with self; { cyphid = derive2 { name="cyphid"; version="1.1"; sha256="0ya9w8aw27n0mvvjvni4hxsr4xc8dd08pjxx7zkfl1ynfn5b08am"; depends=[fda]; }; cyphr = derive2 { name="cyphr"; version="1.1.2"; sha256="1nbl10yackgbqjx42lgkyb74d1swa9yzbanyk3wa4b0xcqf5iv3g"; depends=[getPass openssl sodium]; }; cystiSim = derive2 { name="cystiSim"; version="0.1.0"; sha256="0pz8jxi4lgcwzrb4dh8xn63xhpaga5rzg5hwqicwv8isc16iqizd"; depends=[ggplot2 knitr magrittr]; }; - cytoDiv = derive2 { name="cytoDiv"; version="0.5-3"; sha256="00c0gqgypywgbhavb15bvj6ijrk4b5zk86w85n9kwr4069b7jvwc"; depends=[GenKern plotrix]; }; cytofan = derive2 { name="cytofan"; version="0.1.0"; sha256="0gqs98mnwiawnyfb9hs5nlin8d1fj64bszn4b40gs8ajyh36r9pp"; depends=[ggplot2 RColorBrewer]; }; cytometree = derive2 { name="cytometree"; version="2.0.2"; sha256="18g7av73lmnyga1kk24bf8jy599zn9n6qhr13mxsqgi0zdinicfa"; depends=[cowplot ggplot2 GoFKernel igraph mclust Rcpp RcppArmadillo]; }; cytominer = derive2 { name="cytominer"; version="0.2.2"; sha256="1n9yimjhdziv1vzjyni6ssi38nxcnfr5jpmzgxcn6vysffh5s9pz"; depends=[caret doParallel dplyr foreach futile_logger magrittr Matrix purrr rlang tibble tidyr]; }; @@ -7958,17 +7759,17 @@ in with self; { d3plus = derive2 { name="d3plus"; version="0.1.0"; sha256="0kadz83pals03n0v3zqhmhf6visigk52yn58xckhb57fid4xzj5w"; depends=[htmlwidgets magrittr]; }; d3po = derive2 { name="d3po"; version="0.3.2"; sha256="0qhdk2ap9bkf4xfbpyh1k6s2kb6lgr2vgn5ns228vrckghwxhkri"; depends=[assertthat dplyr htmlwidgets magrittr purrr rlang]; }; d3r = derive2 { name="d3r"; version="1.0.0"; sha256="1qijkllfaaw0lb29j8mappm8jz9kg8gkihxq5wqhb4gabsazdwva"; depends=[dplyr htmltools rlang tidyr]; }; - d4storagehub4R = derive2 { name="d4storagehub4R"; version="0.2"; sha256="1hifxlaxnhvjcz3z2f5q96mlw3m37z5smy7qcpf2hynmr0byrmfb"; depends=[httr jsonlite keyring R6 XML]; }; + d4storagehub4R = derive2 { name="d4storagehub4R"; version="0.3"; sha256="0w5wk3cf2hnn61vacx5nydj28ly7h51gcqbw7z7lz365rcis4qmi"; depends=[httr jsonlite keyring R6 XML xml2]; }; dBlockmodeling = derive2 { name="dBlockmodeling"; version="0.2.0"; sha256="0c1hvawb9gw6vckims3g8kzn2c4f0as5x1vw39sdvkwc92xy26lv"; depends=[]; }; dCUR = derive2 { name="dCUR"; version="1.0.0"; sha256="12i2qcjq9i1ycs6z6g3yr1imv7v4g19kdhf1vg9xkvh43pagb6h7"; depends=[dplyr ggplot2 magrittr MASS mclust ppcor Rdpack stackoverflow]; }; dChipIO = derive2 { name="dChipIO"; version="0.1.5"; sha256="1xrafw5h071d8rfqaic3gifc80jpiddjz5x6l2cr8kgjvph60gqh"; depends=[]; }; dCovTS = derive2 { name="dCovTS"; version="1.2"; sha256="0gzilpz2hwibvwjpndi2nw61knhi4v0bhz5z4idffszgc9mjw1wm"; depends=[dcov doParallel foreach Rfast Rfast2]; }; dGAselID = derive2 { name="dGAselID"; version="1.2"; sha256="0da7fi872i3ycb3j5v4isr4x2z39a68w4mdq859zslmqhiqd43b6"; depends=[ALL Biobase genefilter MLInterfaces]; }; dHSIC = derive2 { name="dHSIC"; version="2.1"; sha256="1c1xz1f1fp937w4rlylvqv3ii0p9dafvmn4fqq8rzxhcg5rn9j4l"; depends=[Rcpp]; }; - dLagM = derive2 { name="dLagM"; version="1.1.7"; sha256="1i5fwzdscp7wpzbsdvwvak26p0aj0xviisp0aglaa7nrwixx8y0w"; depends=[AER dynlm formula_tools lmtest MASS nardl plyr roll sandwich strucchange wavethresh]; }; + dLagM = derive2 { name="dLagM"; version="1.1.8"; sha256="05pm72rpj5d4kvr8fybsw109p59wfy7kc2x3m810c94qni9apw18"; depends=[AER dynlm formula_tools lmtest MASS nardl plyr roll sandwich strucchange wavethresh]; }; dMod = derive2 { name="dMod"; version="1.0.2"; sha256="1fnv3f5xlng8f3df5hvxncfnnadzwcsdiklrb2g67llf3m06bq74"; depends=[cOde deSolve doParallel dplyr foreach ggplot2 plyr rootSolve stringr]; }; dPCP = derive2 { name="dPCP"; version="1.0.4"; sha256="1wxni1m9iaak0isc1sl205dnx3v8pzqyj22aj7alzwim6d6a4hjq"; depends=[dbscan e1071 exactci ggplot2 ggpubr raster rlist scales shiny shinyjs stringr]; }; - dQTG_seq = derive2 { name="dQTG.seq"; version="1.0"; sha256="16c25s5i5spdpdbvfa25s4z47wbyffv8jin5jqb0rnx24rbfcwsh"; depends=[BB data_table doParallel foreach openxlsx qtl stringr writexl]; }; + dQTG_seq = derive2 { name="dQTG.seq"; version="1.0.1"; sha256="04m61jdqfyb90lb6lsxx9mzvj3dpr1qrd4835h6dyn5p6ahz2z26"; depends=[BB data_table doParallel foreach openxlsx qtl stringr vroom writexl]; }; dSVA = derive2 { name="dSVA"; version="1.0"; sha256="0vy0flyg82x0n9vw6jf9f76qy84sp0wnis91faj37ac5hdv3pvsb"; depends=[sva]; }; dTBM = derive2 { name="dTBM"; version="2.0"; sha256="14y0x97gb1345ybvpd4rk0bidlzl613lgrl9pa4y197nhdkqdrx0"; depends=[EnvStats tensorregress WeightedCluster]; }; daarem = derive2 { name="daarem"; version="0.7"; sha256="1pm8nj4ffc18njpr87hb988j551zp0s6ysr37nk784ibk4awxf7x"; depends=[]; }; @@ -7981,7 +7782,7 @@ in with self; { dae = derive2 { name="dae"; version="3.2-13"; sha256="0mq94ah21p1glvsbvdmi2p7nlgz1bvq7w3rz2z3mdqq18kz6nkjw"; depends=[ggplot2 plyr]; }; daewr = derive2 { name="daewr"; version="1.2-7"; sha256="138hmmrm3zcdb2rcilvrasndvsq38agp9bpikd3xbb7j4z1nrsl7"; depends=[FrF2 lattice stringi]; }; daff = derive2 { name="daff"; version="0.3.5"; sha256="00zcdf215m7p3xm9yv571v09znhdqacxg69hb5b5j749mp4wdsyj"; depends=[jsonlite V8]; }; - dafs = derive2 { name="dafs"; version="1.0-37"; sha256="1vdi57qaqdn39yf1ih2gzry02l289q4bffpksglsl4shs6bg2206"; depends=[s20x]; }; + dafs = derive2 { name="dafs"; version="1.0-38"; sha256="0ljhpw2f4hbkqh6c6gwqwwdsa4kp5qvyphig5zcn6qrb9ryf3wh1"; depends=[s20x]; }; dagR = derive2 { name="dagR"; version="1.2.0"; sha256="0fkh2cb0sln8sfklcxjr2qf68wjd4gbqkfay0kynvk5jan58f018"; depends=[]; }; dagirlite = derive2 { name="dagirlite"; version="0.1.0"; sha256="12j5mfxcv32qgx1yklcq8yl2kx4lkxap4biywjrj0sjx6zj60f8l"; depends=[knitr Rdpack]; }; dagitty = derive2 { name="dagitty"; version="0.3-1"; sha256="1a78g2nr8i7mzzxyb6mfsqqgjyf3s4hwngvyd9vyygzcb79bai3x"; depends=[boot jsonlite MASS V8]; }; @@ -8019,14 +7820,13 @@ in with self; { dataReporter = derive2 { name="dataReporter"; version="1.0.2"; sha256="1rjm6j1s229j1j9yb5y1sdi03x22qzrkmhc09k4xdmwmwmpi3s58"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; }; dataRetrieval = derive2 { name="dataRetrieval"; version="2.7.11"; sha256="0dhayggsnxjqr4wpplydayya3cns78iikmzsn3dclvyr3aw8352r"; depends=[curl httr jsonlite lubridate readr xml2]; }; datacleanr = derive2 { name="datacleanr"; version="1.0.3"; sha256="0mrfqm3lgb6sl2j35sfd00gb5121j9wmlff8k0vczr3sgmqz4dg8"; depends=[bslib clipr dplyr DT formatR fs glue htmltools htmlwidgets lubridate magrittr plotly purrr RColorBrewer rlang rstudioapi shiny shinyFiles shinyWidgets summarytools]; }; - datadigest = derive2 { name="datadigest"; version="1.0.2"; sha256="1v4nwflrgjhwkrdlrjnqyq1spv1jkgxn1kmapml0zrvnvwf0r1a1"; depends=[haven Hmisc htmltools htmlwidgets jsonlite miniUI shiny tibble]; }; datadogr = derive2 { name="datadogr"; version="0.1.2"; sha256="10zbxb9gkymw78ras9y4wrifz7cxh3y630yzjcf9ds2p557vcjzp"; depends=[anytime dplyr glue httr lubridate purrr stringr tibble tidyr]; }; dataframeexplorer = derive2 { name="dataframeexplorer"; version="1.0.2"; sha256="0g5ajvd81k5pamvn204rxaiw92k20qqffnia1g6z89lp73spxs0s"; depends=[data_table dplyr magrittr openxlsx plyr stringr tibble tidyr]; }; dataframes2xls = derive2 { name="dataframes2xls"; version="0.4.7"; sha256="10krlv0l5w021z0qd7rj93pzfjjmcjlda4xz4vq470bxbjmn1bss"; depends=[]; }; datafsm = derive2 { name="datafsm"; version="0.2.4"; sha256="0klhkbwpaqxk2mnxha8b03mpgfxk107ff9d2nx6cky59il3c1825"; depends=[caret GA Rcpp]; }; datagovindia = derive2 { name="datagovindia"; version="1.0.5"; sha256="1k04k2bz56d3k1nbx8p8pc1x3cxrdmnpgbrgmxl5i1qg3yashj91"; depends=[curl dplyr httr magrittr plyr rlang stringr]; }; datamart = derive2 { name="datamart"; version="0.5.2"; sha256="0c0l157fzkcp30ch4ymaalcx18zhz6sa5srr50w9izhbx3pmldxp"; depends=[base64 gsubfn markdown RCurl RJSONIO XML]; }; - datamods = derive2 { name="datamods"; version="1.2.0"; sha256="1k5nbpy40jzk6jhgigq74qxvb0ni44p3iwb342950qbnb8aniwxw"; depends=[data_table DT htmltools phosphoricons readxl rio rlang shiny shinyWidgets tibble]; }; + datamods = derive2 { name="datamods"; version="1.3.2"; sha256="0m4d7qhd0zmh2vqq5nrkq8302hv0mj53wzzlj5vsm2rxnimqfmd5"; depends=[data_table htmltools htmlwidgets phosphoricons reactable readxl rio rlang shiny shinyWidgets tibble]; }; datanugget = derive2 { name="datanugget"; version="1.0.0"; sha256="1ki4kgz6y9a313f07jml39pdxhadgs287rkpnlwvcw6kgj5qxala"; depends=[doSNOW foreach]; }; dataonderivatives = derive2 { name="dataonderivatives"; version="0.4.0"; sha256="0bp1ynarz70c2clsz60dqfd4vmgm3251jv6821db5n7fffdrr7qa"; depends=[httr2 readr tibble vetr]; }; dataone = derive2 { name="dataone"; version="2.2.1"; sha256="1gnzyjiwppx5mjwf38nm146vvmy6vlpqy9ibd2rc5f744pdvifxb"; depends=[base64enc datapack hash httr jsonlite parsedate plyr stringi stringr uuid XML]; }; @@ -8037,9 +7837,9 @@ in with self; { datardis = derive2 { name="datardis"; version="0.0.2"; sha256="1ijwrbkz5dp19b225n6dcbjw264pad4imgm0yf1nqr106h92yjdv"; depends=[dplyr magrittr]; }; dataresqc = derive2 { name="dataresqc"; version="1.1.0"; sha256="1m7c93yk3dp1l5ysgscjvmv7z0xnmgaz4bkci4ljmmmn5a9v6r3c"; depends=[]; }; datarium = derive2 { name="datarium"; version="0.1.0"; sha256="1v98yxsxhfqlalz5qy3x5axb7fy067vf3y0qg7ngixphmy9qybym"; depends=[]; }; - datarobot = derive2 { name="datarobot"; version="2.18.0"; sha256="1sjng65qjqbizyfdhc3iny04x56dpvbdb8mck2kl9lyayrjxp81g"; depends=[httr jsonlite yaml]; }; + datarobot = derive2 { name="datarobot"; version="2.18.2"; sha256="1k6nqkcxjnhv4j11lm204nl85dibljfx3w2214mz0g9d7zjqrwbi"; depends=[httr jsonlite yaml]; }; datasailr = derive2 { name="datasailr"; version="0.8.10"; sha256="03bnrgpwhmh67zrvap3cbaqd5k6nkp63b2h8m08xrdp1ngp5inik"; depends=[Rcpp]; }; - datasauRus = derive2 { name="datasauRus"; version="0.1.4"; sha256="1w1yhwwrmh95bklacz44wjwynxd8cj3z8b9zvsnzmk18m5a4k0fl"; depends=[]; }; + datasauRus = derive2 { name="datasauRus"; version="0.1.6"; sha256="0vgylf3bab0xcfg08xwvfq9yhxy6w0fxi7wp4kkxfyjb0pw15qxk"; depends=[]; }; dataseries = derive2 { name="dataseries"; version="0.2.0"; sha256="11wc2p5m8qbdmkpbd21lpwl28a1dpab88c3gqyrhsn0298lpnip4"; depends=[]; }; datasets_load = derive2 { name="datasets.load"; version="2.0.0"; sha256="11ckwijflh915gj4w1gwaj8v58ksl3q33rdafb82p2m4gx41rlr5"; depends=[DT miniUI shiny]; }; datasetsICR = derive2 { name="datasetsICR"; version="1.0"; sha256="1iw8am7y6r6j21rp6r6iw1ri4c2yrgza7aw3ams4xbx6mcz3746y"; depends=[]; }; @@ -8048,9 +7848,9 @@ in with self; { datastructures = derive2 { name="datastructures"; version="0.2.9"; sha256="0prw24iy1af02g1nzw588dv085bdnl6pzvizpxspmwzj6vrfbaav"; depends=[BH purrr Rcpp]; }; dataverse = derive2 { name="dataverse"; version="0.3.10"; sha256="0fhxzd83hl2qgif8d5caw893i5w2b951yl7a5dmbj69ihcn0xfrg"; depends=[checkmate httr jsonlite readr xml2]; }; datawizard = derive2 { name="datawizard"; version="0.4.0"; sha256="1j26xv1zm7qwp80gy6vlysq3zxdj9r8ivi54b1d6s0ckqkww6gja"; depends=[insight]; }; + datazoom_amazonia = derive2 { name="datazoom.amazonia"; version="0.3.0"; sha256="13nqvpc2gbz0pz2bnq2n6qa3qcwmfjfr15rznrsasl82s3myvfgk"; depends=[data_table dplyr Hmisc janitor labelled lubridate magrittr purrr RCurl readr readxl sf sidrar stringi stringr tibble tidyr XML]; }; date = derive2 { name="date"; version="1.2-39"; sha256="0mwp1619rxqyyyyxk224fh0x6g4rgyvr97q0kj076cxp71b97cdm"; depends=[]; }; - datefixR = derive2 { name="datefixR"; version="0.1.4"; sha256="185lv1dap6xkmyqkv4fjmlmf6w95gm6szi0pps0pfrmcj42ng1fa"; depends=[stringr]; }; - datelife = derive2 { name="datelife"; version="0.6.1"; sha256="0fv478ykka6m5j3d6k7265xp76qc78fr7ms9khx349qbylj67306"; depends=[abind ape BiocManager bold cluster compare geiger httr ips knitcitations paleotree phangorn phylobase phylocomr phytools plyr rotl stringr taxize treebase]; }; + datefixR = derive2 { name="datefixR"; version="0.1.6"; sha256="1llg231m51120v9pkgxa75hjvlsngmyklbdm1vxpld6cvrb9cwqv"; depends=[stringr]; }; daterangepicker = derive2 { name="daterangepicker"; version="0.1.0"; sha256="1605ch84ad3nmmad0yy3id0izv0nz536lxwib6rkdkjik5761gqk"; depends=[htmltools jsonify shiny]; }; datetime = derive2 { name="datetime"; version="0.1.4"; sha256="0nn1yxknsn3crmwbkws5kvfjhd65dw0fkfbg67gba0dyaqp1jg37"; depends=[]; }; datetimeutils = derive2 { name="datetimeutils"; version="0.5-0"; sha256="030md2pydhgx8x8chga7byl8x41m2dbw94b4ds7md2nqkdrq7hqz"; depends=[]; }; @@ -8065,8 +7865,6 @@ in with self; { dawai = derive2 { name="dawai"; version="1.2.5"; sha256="0g52bm66jnvga4sf5n5m18k5jx56vqpn886jk0k6lydj78nkq88q"; depends=[boot ibdreg mvtnorm]; }; daySupply = derive2 { name="daySupply"; version="0.1.0"; sha256="1317g60cmqlw1wy7n7x5ifh544lzsysif6192s2k16jmgzj6cz2s"; depends=[dplyr lme4 magrittr rlang]; }; daymetr = derive2 { name="daymetr"; version="1.6"; sha256="04dyc890kqr24n0lv1dl23p6s086hcgh5l6r496yycjzlyi8bm44"; depends=[httr raster sf tibble tidyr]; }; - dbEmpLikeGOF = derive2 { name="dbEmpLikeGOF"; version="1.2.4"; sha256="0vhpcxy702cp3lvlif2fzmvccys8iy7bv1fbg6ki2l8bvn2f7c5p"; depends=[]; }; - dbEmpLikeNorm = derive2 { name="dbEmpLikeNorm"; version="1.0.0"; sha256="0h5r2mqgallxf9hin64771qqn9ilgk1kpsjsdj2dqfl3m8zg967l"; depends=[dbEmpLikeGOF]; }; dbMC = derive2 { name="dbMC"; version="1.0.0"; sha256="0gcgn3m10sx0naim206jkw7szl0mr7vbnkn25avvv9f8iy3y9vcv"; depends=[softImpute]; }; dbWebForms = derive2 { name="dbWebForms"; version="0.1.0"; sha256="0diz5mh4fhwrwqa7jr70vzj2jks7h2n91v2hr1mvvlbc7rzd9yki"; depends=[data_table DBI html5 stringi]; }; dbarts = derive2 { name="dbarts"; version="0.9-22"; sha256="02hmqzfk9sgz4vndnpnpcav7wlpy9xna8zdnlwgcj4a84zz2pyk8"; depends=[]; }; @@ -8084,7 +7882,6 @@ in with self; { dbplot = derive2 { name="dbplot"; version="0.3.3"; sha256="1svizj9hcd417yii8ll9s3mnvdqpa5awy9xl71kbwpfcnpdzqf1r"; depends=[dplyr ggplot2 magrittr purrr rlang]; }; dbplyr = derive2 { name="dbplyr"; version="2.1.1"; sha256="025wqpmxdhzblb0pf58m3qh5h6bf5x8qvkf47vyl1cjsp13wz95b"; depends=[assertthat blob DBI dplyr ellipsis glue lifecycle magrittr purrr R6 rlang tibble tidyselect vctrs withr]; }; dbscan = derive2 { name="dbscan"; version="1.1-10"; sha256="1h8x1v9kk5zmw5qd575cyr16yz8l226lsaq71n079l4i8crcrzg1"; depends=[Rcpp]; }; - dbstats = derive2 { name="dbstats"; version="1.0.5"; sha256="0pr80mx8y87l96hhg0rp3ajxl7yx2f8qr0y1zrjkbzxavjmp9k34"; depends=[cluster pls]; }; dbx = derive2 { name="dbx"; version="0.2.8"; sha256="0pdf0l9h44666bmfsa43nrmi77ffzygb5mzjfrv7pk99qi7ryw46"; depends=[DBI]; }; dc3net = derive2 { name="dc3net"; version="1.2.0"; sha256="19ibsvbnq6y88vqvgkm31zrqwjhpml59d792bz0zkk50r1q5bnyr"; depends=[c3net igraph RedeR]; }; dcGOR = derive2 { name="dcGOR"; version="1.0.6"; sha256="0rvwa25r23yayx1i6xhkfaw2z85d2iyfx3slg3aq1m0fa7kj380p"; depends=[dnet igraph Matrix]; }; @@ -8093,7 +7890,6 @@ in with self; { dccvalidator = derive2 { name="dccvalidator"; version="0.3.0"; sha256="1l74pqvac0n7dyfzkz2m0m6j19c8icymbwcifp2g5qvrpznfhxjb"; depends=[config ggplot2 glue golem htmltools knitr markdown purrr reactable readr readxl reticulate rlang shiny shinyBS shinydashboard shinyjs skimr tibble visdat]; }; dclone = derive2 { name="dclone"; version="2.3-0"; sha256="0w1bhzsnmnhsrrw5ffm89pj2wy2fmx14y7g6b1mb2wlwbczjzzsh"; depends=[coda Matrix rjags rstan]; }; dclust = derive2 { name="dclust"; version="0.1.0"; sha256="1icfx52v3g7kkkc11pw0xlrc8dlx5q3n2zbrd3fccmw17jzxqbg7"; depends=[openssl phylogram]; }; - dcminfo = derive2 { name="dcminfo"; version="0.1.7"; sha256="03r0ynzc5cck2rz20zbg5zx8v6s66ivizqav1pjkyvp6kxkmnf8q"; depends=[CDM]; }; dcmle = derive2 { name="dcmle"; version="0.3-1"; sha256="1d6zk9413h30wcw8q1gnjzk67vshmjcpnh8zjxrsh1h69i1z6rpy"; depends=[coda dclone lattice]; }; dcmodify = derive2 { name="dcmodify"; version="0.1.9"; sha256="0p4xw74rls7i3fymsjcrazkrp22cfrfffz63l7wyb842z902smls"; depends=[settings validate yaml]; }; dcmodifydb = derive2 { name="dcmodifydb"; version="0.2.0"; sha256="1m85vvflq2hgyi2b0mhwy1yln5wqdslj0zap592r6yqcjci38fq7"; depends=[DBI dbplyr dcmodify dplyr validate]; }; @@ -8108,9 +7904,9 @@ in with self; { ddpca = derive2 { name="ddpca"; version="1.1"; sha256="1qsanid7sr2nc9pwzyz4cbjc1vg0rj255d3rnh1rb22agrgj2bc1"; depends=[MASS Matrix quantreg RSpectra]; }; ddpcr = derive2 { name="ddpcr"; version="1.15"; sha256="04q2k6kag3qx9g6iarb84ski7s895xdd20zlaw7wmidfv038kmws"; depends=[dplyr DT ggplot2 lazyeval magrittr mixtools plyr readr shiny shinyjs tibble]; }; ddst = derive2 { name="ddst"; version="1.4"; sha256="1y0immm337adkd2bjx8c5pf02w9wysv3gj26f4qf0jiba0f2wk8n"; depends=[evd orthopolynom]; }; - deBInfer = derive2 { name="deBInfer"; version="0.4.2"; sha256="108vijk71sgsj14hwfv78r4lnn68cybvnpr92zvrvl0d82b7qxfd"; depends=[coda deSolve MASS mvtnorm PBSddesolve plyr RColorBrewer truncdist]; }; - deBif = derive2 { name="deBif"; version="0.1.0"; sha256="0gws9g08vfh8sdwan4kxhnzw912rpc9bxcmsl2bjkzmpy1ncyrk5"; depends=[deSolve rootSolve rstudioapi shiny shinydashboard shinydashboardPlus shinyjs]; }; - deSolve = derive2 { name="deSolve"; version="1.31"; sha256="06gsh514msqdmri78969snhgh22d2bzmnkqfgh0s74aprfd93m8r"; depends=[]; }; + deBInfer = derive2 { name="deBInfer"; version="0.4.3"; sha256="0dqsbwkj3k2hm2ks13p8rsd2vh1jlw0si0xc09cqb2nwir9zvdrv"; depends=[coda deSolve MASS mvtnorm PBSddesolve plyr RColorBrewer truncdist]; }; + deBif = derive2 { name="deBif"; version="0.1.5"; sha256="03n20p7vpa28laxhxvm7drq89vr1hadxaxhwjqc1wb44bwhy4cvy"; depends=[deSolve rootSolve rstudioapi shiny shinydashboard shinydashboardPlus shinyjs]; }; + deSolve = derive2 { name="deSolve"; version="1.32"; sha256="1bfr4w760nr7mjhpmf32z39swr6isnn1665cld2d1pdgx8b0yrvl"; depends=[]; }; deTS = derive2 { name="deTS"; version="1.0"; sha256="08yq7vfcd8fv8qw2w0f1rnj3rzys9kslmkqspmiz6prmzqvj1zf1"; depends=[pheatmap RColorBrewer]; }; deTestSet = derive2 { name="deTestSet"; version="1.1.7.3"; sha256="0v59cczhwjrk7qgngmiyc7jvx11h808w4s3ww6l83n1ylx81fgll"; depends=[deSolve]; }; deaR = derive2 { name="deaR"; version="1.2.5"; sha256="1k38j9l6rhw2gkpvz202gsja1jz3p57d8s3iv2nm7ph9000z03p9"; depends=[dplyr ggplot2 gridExtra igraph lpSolve plotly tidyr writexl]; }; @@ -8122,12 +7918,12 @@ in with self; { debugr = derive2 { name="debugr"; version="0.0.1"; sha256="0lfq0s0hibd00558vl3dmvrkzxjc7q62xr8sqzai0pv9a9lhixcn"; depends=[rprojroot rstudioapi]; }; decido = derive2 { name="decido"; version="0.3.0"; sha256="14y3z5ys5y3kffgm0dk92rx4vd1mi9jvxn7pqvwi4jhyx7wx06pw"; depends=[Rcpp]; }; decision = derive2 { name="decision"; version="0.1.0"; sha256="13d0yyg5zp7n3r92l0l1dsffxfph6vacrlzga9rz41l5pja72z6g"; depends=[]; }; - decisionSupport = derive2 { name="decisionSupport"; version="1.110"; sha256="1yqdffrqk18vmna6vv699pa987cd266gihsccs47a2vdhlhgrk2m"; depends=[assertthat chillR dplyr fANCOVA ggplot2 ggstance magrittr msm mvtnorm nleqslv patchwork rriskDistributions stringr tidyr tidyselect]; }; + decisionSupport = derive2 { name="decisionSupport"; version="1.111"; sha256="0san25jhn025lbmjnvqpdkid9rpsr94p8511k4c1iia7ljczbgmp"; depends=[assertthat chillR dplyr fANCOVA ggplot2 ggstance magrittr msm mvtnorm nleqslv patchwork rriskDistributions stringr tidyr tidyselect]; }; deckgl = derive2 { name="deckgl"; version="0.2.7"; sha256="0ifv6j0kbwayl60bf1rwd1h7424npqsqsvb44ngg7v0ik4bgbyfx"; depends=[base64enc htmltools htmlwidgets jsonlite magrittr readr tibble yaml]; }; - declared = derive2 { name="declared"; version="0.13"; sha256="11wqm1gmzri6ig70vwbfyjix7rkmqdd351b93gw6jlfi1j8rxggi"; depends=[admisc]; }; + declared = derive2 { name="declared"; version="0.16"; sha256="10mw02jk1h5q73sab1fq7y1lszb0hss0yzk89ly2fzy9lh84wrsp"; depends=[]; }; decode = derive2 { name="decode"; version="1.2"; sha256="1qp0765gl3pgfdzjwj7icf3zminxxmrlw6gx3vj51y6c2y5ws4as"; depends=[]; }; decoder = derive2 { name="decoder"; version="1.2.2"; sha256="1jxgd32bn36ldal26wivhdxgjy247l7r4ickacr1p8rrwxvhpk18"; depends=[]; }; - decomposedPSF = derive2 { name="decomposedPSF"; version="0.1.3"; sha256="0p9n0qi21facdp9c4fzs78ap4w1wvpvkv51kgx1gkr949kw8cv4n"; depends=[forecast PSF Rlibeemd tseries]; }; + decomposedPSF = derive2 { name="decomposedPSF"; version="0.2"; sha256="12sb4zzvc29hvhlay97g84pn4saqyp16wckjrdgg4qqpc0rzrfz5"; depends=[forecast PSF Rlibeemd tseries]; }; decompr = derive2 { name="decompr"; version="6.2.0"; sha256="13a1f6qhzn37z765vqwa4l6yp24jjg8721x0rw9a0wbbzxsxjb09"; depends=[matrixStats]; }; decon = derive2 { name="decon"; version="1.3-4"; sha256="036cv56wf42q2p3d5h15hbrp5rc29xxy20qwv4k1qzhkq6hmw0qs"; depends=[]; }; deconstructSigs = derive2 { name="deconstructSigs"; version="1.8.0"; sha256="014x0nb23jb98666kaav2phkvmkr38pi38jv0dqd4jv7zp0gdf1a"; depends=[BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb reshape2]; }; @@ -8144,7 +7940,7 @@ in with self; { deepdep = derive2 { name="deepdep"; version="0.4.1"; sha256="0w8wls8ivy4c0vdaxvmp8030wzww73i60nan9vriwbgk7vsjk16q"; depends=[cranlogs httr jsonlite]; }; deepdive = derive2 { name="deepdive"; version="1.0.4"; sha256="0q4jjq11bd52bx0vqjxsh0fz1b72pfy4gpj5p19z7p4czf4a46c6"; depends=[data_table fastDummies plyr rpart stringr treeClust]; }; deepgmm = derive2 { name="deepgmm"; version="0.1.62"; sha256="1cllbq87xxzgba3a1prkjg7hdfkxjnmi8fgizqrlsvbxdhpg61yh"; depends=[corpcor mclust mvtnorm]; }; - deepgp = derive2 { name="deepgp"; version="0.3.1"; sha256="1hjq9bv9fb05m0hczis64p2x3f2qv0szi005vr3xm5kg7sbb2j5i"; depends=[BH doParallel foreach mvtnorm Rcpp RcppArmadillo]; }; + deepgp = derive2 { name="deepgp"; version="1.0.0"; sha256="1iq6b9dy60m997jgqj5zrdz3m6vv54p2lb084pkv1mh8f9wgis75"; depends=[doParallel FNN foreach GpGp Matrix mvtnorm Rcpp RcppArmadillo]; }; deeplr = derive2 { name="deeplr"; version="2.0.0"; sha256="189kfcsd3cr0397krbfqh56x7h0v6i27s5jbfwr5zrf3jazllall"; depends=[httr purrr tibble tokenizers utf8]; }; deepnet = derive2 { name="deepnet"; version="0.2"; sha256="09crwiq12wzwvdp3yxhc40vdh7hsnm4smqamnk4i6hli11ca90h4"; depends=[]; }; deepredeff = derive2 { name="deepredeff"; version="0.1.1"; sha256="027dsmc3wmm61qc0vybn02c5dbnz5nwf80m9sywci4nhirz978ik"; depends=[Biostrings dplyr ggplot2 ggthemes keras magrittr purrr reticulate rlang seqinr tensorflow]; }; @@ -8152,6 +7948,7 @@ in with self; { deeptime = derive2 { name="deeptime"; version="0.2.1"; sha256="1b0ba304950y2w7x8q5ag66fpfv7c4lpcdglf47yfps5nivkjk4n"; depends=[ggfittext ggforce ggnewscale ggplot2 gridExtra gtable lattice rlang scales]; }; default = derive2 { name="default"; version="1.0.0"; sha256="0hzxgp9la9kll5cw3m4gd02rii571xsn1v53kz407k7k6rfg5mda"; depends=[]; }; deflateBR = derive2 { name="deflateBR"; version="1.1.2"; sha256="17zsy10k12gmffbk7nagi60xj347q0bf7wr885fiylqz2xiy9fl9"; depends=[dplyr httr lubridate]; }; + deforestable = derive2 { name="deforestable"; version="3.0.0"; sha256="1f0yk3346bs4k6msw5idlpj66kg8sg6c3x229l3nif2pyp16j1c4"; depends=[jpeg plyr StableEstim terra]; }; deformula = derive2 { name="deformula"; version="0.1.1"; sha256="0h85yzl8kvjwrn1mkzyblvknf7gg8kx8y85qnvkwfbr9ik42ngn1"; depends=[]; }; degreenet = derive2 { name="degreenet"; version="1.3-3"; sha256="07mkj2sdp09624mmb1x3djjypnrzn43qn2j4m93blli51j6zchm3"; depends=[igraph network]; }; degross = derive2 { name="degross"; version="0.9.0"; sha256="17n389a0k4jswgs908bcdhi410wpd1ljxh5izv35cldfq7dhjb3k"; depends=[cubicBsplines]; }; @@ -8170,9 +7967,8 @@ in with self; { demu = derive2 { name="demu"; version="0.3.0"; sha256="1mp5iz8mg0d6cyqi3f6fdhk6x5xxvng5bi13b7jnlp60wpjrq0il"; depends=[ClusterR fields Matrix Rcpp RcppArmadillo spam]; }; dendRoAnalyst = derive2 { name="dendRoAnalyst"; version="0.1.3"; sha256="1rg8xra4z3q9czkqydn2587iqwp7whscv8camrkhjpc38788cf4q"; depends=[boot pspline zoo]; }; dendextend = derive2 { name="dendextend"; version="1.15.2"; sha256="06wjs8451hmnimzgngpzbai3yrgy33133vzzapa8jib9crdqi8sb"; depends=[ggplot2 magrittr viridis]; }; - dendroTools = derive2 { name="dendroTools"; version="1.2.7"; sha256="00a37mvka1wqj0jghgss3jp4jwvcr74lpf5shmba3jwiaapm3ab9"; depends=[boot brnn Cubist dplR dplyr ggplot2 knitr lubridate magrittr MLmetrics oce plotly psych randomForest reshape2 scales viridis]; }; + dendroTools = derive2 { name="dendroTools"; version="1.2.8"; sha256="095599qgikx7xbs82x4v4h555rss6vhh8b9mnpk5dj9p2lx7nf9x"; depends=[boot brnn Cubist dplR dplyr ggplot2 knitr lubridate magrittr MLmetrics oce plotly psych randomForest reshape2 scales viridis]; }; dendroextras = derive2 { name="dendroextras"; version="0.2.3"; sha256="0hb7crbgsnbcwvbk05iz5ik45n7zgysmwjj6xc46131yd8l0i1qx"; depends=[]; }; - dendrometeR = derive2 { name="dendrometeR"; version="1.0.0"; sha256="1par27ipgbfbrmdlwvkf82i5dgnfrcawmavakrf8lplin2hhb7gs"; depends=[forecast pspline zoo]; }; dendsort = derive2 { name="dendsort"; version="0.3.4"; sha256="0rs7y471wrhkgibxdmfh5xhp3pa004rrlm2w08b6qli5gq4im5d2"; depends=[]; }; denoiSeq = derive2 { name="denoiSeq"; version="0.1.1"; sha256="18w69gxbnazg5k8bzi76slcqxnbfmrndp548zazz8bpxz3jns699"; depends=[]; }; denoiseR = derive2 { name="denoiseR"; version="1.0.2"; sha256="1q5kxiwfkrf2k0gpidzhl4hyzyjcm33rwlw4dan9nkx1181naw9l"; depends=[FactoMineR irlba Matrix]; }; @@ -8193,7 +7989,7 @@ in with self; { depth_plot = derive2 { name="depth.plot"; version="0.1"; sha256="0zjg9iyqmcnkvwc9w2j7lmk3k9nsg6n8m6vq5x44d1bp4g2gr6jv"; depends=[mvtnorm]; }; depthTools = derive2 { name="depthTools"; version="0.7"; sha256="00pn4ccsg1hjv83xqk4g0g24cz2a87shlbg8kd2dri4dcagzifg0"; depends=[]; }; dequer = derive2 { name="dequer"; version="2.0-2"; sha256="0bc1gf5kbp36zxds70l40r4bsa4f1ih11cy7dkxc6yym6hp79789"; depends=[]; }; - derivmkts = derive2 { name="derivmkts"; version="0.2.4"; sha256="1ncqhi6f69jv75dad1l9wsrfxi5m2wizywikkbg7i9qmh42xkh8w"; depends=[mnormt]; }; + derivmkts = derive2 { name="derivmkts"; version="0.2.5"; sha256="0zjdpjd7qa7zg0dyyq1y4rskk8bi2jpsxzrdg43lnsyrxg99q1n6"; depends=[mnormt]; }; desc = derive2 { name="desc"; version="1.4.1"; sha256="0m3g5m0g08k674zh4lq0ihmqiwz8jpsfqrdwfqp5p4ngxi8vp7lg"; depends=[cli R6 rprojroot]; }; descomponer = derive2 { name="descomponer"; version="1.6"; sha256="1yznb6j850gap1bacvx5dkh4030x38041ll61z6an6h7j71yyc5p"; depends=[]; }; descr = derive2 { name="descr"; version="1.1.5"; sha256="00l3h71y4yfys60sqhifxyxvnjbkxxfxdb4zqjyy0v91pf3z2zv9"; depends=[xtable]; }; @@ -8203,7 +7999,6 @@ in with self; { descstat = derive2 { name="descstat"; version="0.1-2"; sha256="0q463p0bq80c9lhwfv4imbhgx6f1w2jqm3022p5zvycfa9w39rin"; depends=[cli dplyr forcats magrittr purrr rlang tibble tidyr tidyselect]; }; descstatsr = derive2 { name="descstatsr"; version="0.1.0"; sha256="1pz5lww1dkkqvsq6h0vkch39bj76qffmmag3zlag5in75s4wj0wl"; depends=[moments zoo]; }; desctable = derive2 { name="desctable"; version="0.3.0"; sha256="1i0124lnmzdbx468lyqmzbd6disxjifqjy8ss10fl8cin4f868lb"; depends=[dplyr DT htmltools pander rlang tidyr]; }; - deseasonalize = derive2 { name="deseasonalize"; version="1.35"; sha256="1fjsa7g34dckjs6mx9b10m99byxagggm0p9pw2f1vmpjqlasin0l"; depends=[FitAR lattice]; }; desiR = derive2 { name="desiR"; version="1.2.2"; sha256="149wgg5mbq95wizpc24mwb8qfxjdia4qkz66bnzjgiiyfh6r46wp"; depends=[]; }; designGG = derive2 { name="designGG"; version="1.1"; sha256="1x043j36llwd7kd4skbpl2smz2ybsxjqf5yd1xwqmardq60gdv2w"; depends=[]; }; designmatch = derive2 { name="designmatch"; version="0.3.1"; sha256="0px6iyqik4sfs25yybamvf3ay0vd6r75acj8hin76jl6l7fwk30f"; depends=[lattice MASS Rglpk slam]; }; @@ -8220,7 +8015,7 @@ in with self; { detector = derive2 { name="detector"; version="0.1.0"; sha256="010i063b94hzx7qac8gpl67gmk7hzgqm9i1c7pbbw4la3wcd9lz7"; depends=[stringr]; }; detectseparation = derive2 { name="detectseparation"; version="0.2"; sha256="17fpspfsn1rbns8783a0iv5zix95lxza0vfcc7g9v36yarxly609"; depends=[lpSolveAPI pkgload ROI ROI_plugin_lpsolve]; }; detpack = derive2 { name="detpack"; version="1.1.3"; sha256="1mk2k9akagz7knd4n5p8nxkmnm2mdv9izk4i5yl2v9nv5v39mc4h"; depends=[]; }; - detrendeR = derive2 { name="detrendeR"; version="1.0.4"; sha256="1z10gf6mgqybb9ml6z3drq65n7g28h2pqpilc2h84l6y76sy909c"; depends=[dplR]; }; + detrendeR = derive2 { name="detrendeR"; version="1.0.5"; sha256="1kx404z0xp22d1jhpn217l8wcn6p587by908a6465dfpkhc8vyyb"; depends=[dplR tkRplotR]; }; detrendr = derive2 { name="detrendr"; version="0.6.14"; sha256="18yb14blw3md83lnlzalq3aqih56nndwwljds1pjqpm0ssf1d3p0"; depends=[arrayhelpers autothresholdr checkmate doParallel dplyr filesstrings foreach ijtiff iterators magrittr plyr purrr Rcpp RcppParallel rlang stringr withr]; }; detzrcr = derive2 { name="detzrcr"; version="0.3.1"; sha256="0afi1ir8il5xmzkpmbc2m5mvmgzlqw8qdn04gbnwl74a03yaxxmj"; depends=[DT ggplot2 MASS shiny]; }; devEMF = derive2 { name="devEMF"; version="4.0-2"; sha256="1wpziix6g1lr7qq728dfxvd0dyynnliilk029pl861mzx2dgdr6l"; depends=[]; }; @@ -8233,13 +8028,12 @@ in with self; { dexterMST = derive2 { name="dexterMST"; version="0.9.3"; sha256="1c30v83lx6p90l8a9kia5p0361j3ymbabyb2r6dkkak8n8zwfydl"; depends=[crayon DBI dexter dplyr igraph Rcpp RcppArmadillo rlang RSQLite tidyr]; }; dextergui = derive2 { name="dextergui"; version="0.2.5"; sha256="1ms5ypi734yyjp4bxd3hvllm9lpamdk9ynlgfcypw0sji5x7g19j"; depends=[Cairo DBI dexter dplyr DT ggExtra ggplot2 ggridges htmltools htmlwidgets jsonlite networkD3 RCurl readODS readxl rlang shiny shinyBS shinyFiles shinyjs tibble tidyr writexl]; }; dfCompare = derive2 { name="dfCompare"; version="1.0.0"; sha256="1lhx69j0bkjbnp5jz23hrbxjcf04vf3big4k593ixz003xs2077f"; depends=[]; }; - dfadjust = derive2 { name="dfadjust"; version="1.0.3"; sha256="0s9wsws1nxf3fij0jgi6aqqvbx0clk1rdjjyw9in3d1a6ywzcx89"; depends=[]; }; + dfadjust = derive2 { name="dfadjust"; version="1.0.4"; sha256="1a8xvk26rrhgi44f12yfbnjs7vp0llgdvmw2crwb696469df8gb6"; depends=[]; }; dfcomb = derive2 { name="dfcomb"; version="3.0-0"; sha256="1vsqlhmajv33nbnh8igisyv3rzzh2fdwbk5y0zlnrwvr79r19k5w"; depends=[BH Rcpp RcppProgress]; }; dfcrm = derive2 { name="dfcrm"; version="0.2-2.1"; sha256="01rn3zvi9xljmx48lkclckhnixian1vwq1frr8n784dsclp86spg"; depends=[]; }; - dfexplore = derive2 { name="dfexplore"; version="0.2.1"; sha256="04nbhn59l1kas26nwj4qflkjvvr33sj1mm7zg7fhvya85gvlhrbf"; depends=[ggplot2]; }; dfidx = derive2 { name="dfidx"; version="0.0-4"; sha256="00h7hl6668aa5c4fb8r9q7h08672fb6ysi21n2fzich2n3lms984"; depends=[dplyr Formula]; }; dfmeta = derive2 { name="dfmeta"; version="1.0.0"; sha256="0ca48adfhaxac33jmxbynlyg3ak9l5mmjhlr69n4hnz6325gn9vb"; depends=[data_table ggplot2 lme4 plyr]; }; - dfmta = derive2 { name="dfmta"; version="1.7-1"; sha256="13i4ck32z2p4plmy7lz2y4zakc1w915f5h6d9s6vj71212rrg9qm"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; + dfmta = derive2 { name="dfmta"; version="1.7-3"; sha256="0n9056vd75vqxddagj4k23znvwv58db306xm4vv9sq044jc7kkg6"; depends=[BH Rcpp RcppArmadillo RcppProgress]; }; dfoliatR = derive2 { name="dfoliatR"; version="0.2.0"; sha256="0z78nbb2m6qn2xj09j4wgpmid5va1jppdkknhl2l7v3yx8fmmk9i"; depends=[dplR dplyr forcats ggplot2 ggpubr magrittr MASS plyr purrr rlang tidyr]; }; dfoptim = derive2 { name="dfoptim"; version="2020.10-1"; sha256="0gy3wnvwvi9sydcbix226jds88n43r5nchvzrhqdag0j1bwpr9gy"; depends=[]; }; dformula = derive2 { name="dformula"; version="0.1"; sha256="0028qm3wsfpjbkpza5nb87pcm8cg0075jclcy6s4wfflizgfs6n4"; depends=[formula_tools]; }; @@ -8259,19 +8053,18 @@ in with self; { dhh = derive2 { name="dhh"; version="0.0.1"; sha256="00kg2x1was85aq2vr15bak8y5p4mymbs8pbriijlbw64401djmb0"; depends=[]; }; di = derive2 { name="di"; version="1.1.4"; sha256="1w2gjhyi410z98d8wnhbd69jxm69nz4pmnr4fb09i70a90f53s25"; depends=[scales]; }; diagis = derive2 { name="diagis"; version="0.2.2"; sha256="0bnyia73dcnygk6q4n4sxprhxj2pfmzcwmivk5kaxzagqi2zli8g"; depends=[coda ggplot2 gridExtra Rcpp RcppArmadillo]; }; - diagmeta = derive2 { name="diagmeta"; version="0.4-1"; sha256="1xb49m5q7r1amv0kpr62yab3fb3xsaxmx3p0fgcmwiyvv8vzkdnw"; depends=[lme4 meta]; }; + diagmeta = derive2 { name="diagmeta"; version="0.5-0"; sha256="0gpns5yivmnckmpr5wmcwh8bq0r8vzszpzzifkfhz2rlsl724zw1"; depends=[lme4 meta]; }; diagonals = derive2 { name="diagonals"; version="6.0.0"; sha256="1gpm7i22s3v4v7kfgph4k99n255cgzsvc2k11kdflm1zdlp5vg2v"; depends=[]; }; diagram = derive2 { name="diagram"; version="1.6.5"; sha256="1r3lyl0h7mk9cfg8smr3jydfkjdawaphnxibkxfjqa7029vkxh79"; depends=[shape]; }; - dialectR = derive2 { name="dialectR"; version="1.0"; sha256="11fd2fdxczlcxkk3pwhiw0vb51bndh9qcfp7pqcfj1z7aga52xk0"; depends=[deldir dplyr dtw ggplot2 ggvoronoi Rcpp RcppProgress reticulate sf tibble]; }; dialr = derive2 { name="dialr"; version="0.4.0"; sha256="1di5b3w1iif8702j5gnkwp55psbgzwb54ccxah3xscy75sg3zmpm"; depends=[dialrjars rJava]; }; dialrjars = derive2 { name="dialrjars"; version="8.12.42"; sha256="0fn2ic9vllar3wgmgvzx4b2sw5sixzfnjmmk71fnmkii2mfp3s38"; depends=[rJava]; }; dials = derive2 { name="dials"; version="0.1.1"; sha256="1h695g9vklqn0vd53j9k03s0989xjpjr11h5qhz3a0v6465fwm8a"; depends=[DiceDesign dplyr glue hardhat lifecycle purrr rlang scales tibble vctrs withr]; }; - diaplt = derive2 { name="diaplt"; version="1.3.0"; sha256="1kkqhkv3s8rrpqd05jidjdnqmlnb3s9f8rr34rfqj7k4nh0qzzcz"; depends=[]; }; + diaplt = derive2 { name="diaplt"; version="1.4.0"; sha256="103hq13ql8xs1zb90is2r1lanj5vpvz9rk315zvbd8am00fshc9n"; depends=[]; }; diathor = derive2 { name="diathor"; version="0.1.0"; sha256="0nbqjaxb2fzcg9w67nbrszwv9swr1kjmg4dximfc8qdya1kmv8z9"; depends=[data_table ggplot2 purrr stringdist stringr tibble tidyr vegan]; }; dibble = derive2 { name="dibble"; version="0.1.1"; sha256="0b7nym468d3c0yfh7zimpj8ip92jk9izs5p395lwpgpscgsybfs1"; depends=[dplyr pillar rlang tibble tidyselect vctrs]; }; dice = derive2 { name="dice"; version="1.2"; sha256="0gic7lqnsdmwv3dbzwwmcwdfyfqlq8kpr2pciqphd1j2ligzwl3s"; depends=[gtools]; }; - diceR = derive2 { name="diceR"; version="1.1.0"; sha256="01jh69b7x4agw5w2y9dal9g0nbq8s1ff36vcz2xfsjc0vi76irfs"; depends=[abind assertthat class clue clusterCrit clValid dplyr ggplot2 infotheo klaR magrittr mclust NMF purrr RankAggreg Rcpp stringr tidyr yardstick]; }; - dichromat = derive2 { name="dichromat"; version="2.0-0"; sha256="1l8db1nk29ccqg3mkbafvfiw0775iq4gapysf88xq2zp6spiw59i"; depends=[]; }; + diceR = derive2 { name="diceR"; version="1.2.0"; sha256="1cgldmcw96k4d61f90jcbnbbb1wc32b67c81zz2m88n49bixawyz"; depends=[abind assertthat class clue clusterCrit clValid dplyr ggplot2 infotheo klaR magrittr mclust NMF purrr RankAggreg Rcpp stringr tidyr yardstick]; }; + dichromat = derive2 { name="dichromat"; version="2.0-0.1"; sha256="10b0avdar3d1y8x2ya3x5kqxqg0z0mq872hdzvc1nn4amplph1d1"; depends=[]; }; dicionariosIBGE = derive2 { name="dicionariosIBGE"; version="1.6"; sha256="1rss1ydhcn6sma2lmlpq6s0h3dglwc20w499x1jzkcjnzc1rc7gl"; depends=[]; }; dictionaRy = derive2 { name="dictionaRy"; version="0.1.1"; sha256="0j25wn2ghy59y1v02493d4knab06wxrzz8m9g6zxlkqzw1dqgc4f"; depends=[jsonlite tibble]; }; dictionar6 = derive2 { name="dictionar6"; version="0.1.3"; sha256="1rg958py4pqghkid3830hla7vibvwsjhk75x55lxry5d8dp04m9f"; depends=[ooplah R6]; }; @@ -8280,20 +8073,20 @@ in with self; { didimputation = derive2 { name="didimputation"; version="0.1.0"; sha256="0bdvhbxy57a5k7cahrhp8dzcskpbanb11497kg5mbw240ilgh6x3"; depends=[broom dplyr fixest glue magrittr Matrix Rcpp RcppArmadillo rlang stringr]; }; didrooRFM = derive2 { name="didrooRFM"; version="1.0.0"; sha256="12clfnbm56jwldw0afb0nb0argnd97mx7369jiywhxy0p4xqibqq"; depends=[dplyr]; }; dief = derive2 { name="dief"; version="1.2"; sha256="1i4icdfqvw7imaj1fh392zmzfyz8aqlv9s5naqxm1pm0lqfxl6ca"; depends=[flux fmsb ggplot2 plyr]; }; - dielectric = derive2 { name="dielectric"; version="0.2.3"; sha256="1p1c0w7a67zxp1cb99yinylk5r1v89mmpfybcy94ydydhydbhivk"; depends=[]; }; diemr = derive2 { name="diemr"; version="1.0"; sha256="1d6pb2lzr2in1ykqfmjigi771njnjhcrkb4m9rw63r5hrn58by9d"; depends=[zoo]; }; dietr = derive2 { name="dietr"; version="1.1.3"; sha256="03kb36377vx90f7zsl167pyjcyaw3chs710z0nx1kajjhcsdzgjp"; depends=[rfishbase]; }; diezeit = derive2 { name="diezeit"; version="0.1-0"; sha256="0rq1k08byvqn99wpql7drnrcxlzcqrcxixh7bczbc8dv1hhsgk9i"; depends=[brew httr jsonlite]; }; - difNLR = derive2 { name="difNLR"; version="1.3.7"; sha256="1fvil2zys3i8raqkmm8s5p6dyxziwcgchxr1m7q69flms6cpg8gv"; depends=[calculus CTT ggplot2 msm nnet plyr reshape2 VGAM]; }; + difNLR = derive2 { name="difNLR"; version="1.4.1"; sha256="14q6qc27bsqax0ay6a17wfv2p1v5gn01snc71inwci85gr6a3ck6"; depends=[calculus ggplot2 msm nnet plyr VGAM]; }; difR = derive2 { name="difR"; version="5.1"; sha256="1cd5kaal5mjrbj1l9ki2wbqasdxphgc2yhaf4xwgbh1nr2zkhr02"; depends=[deltaPlotR lme4 ltm mirt]; }; difconet = derive2 { name="difconet"; version="1.0-4"; sha256="0cjadi4mnpfmy18vyp0dw55mnhs0zddf51w59gvq6gszk145z3bq"; depends=[data_table gplots mvtnorm stringr]; }; diffEnrich = derive2 { name="diffEnrich"; version="0.1.1"; sha256="19bq2frd2h8gh6mdy3pcwd54zzv170c0m1m3wnp5c4gadb9424qf"; depends=[dplyr ggnewscale ggplot2 here reshape2 rlang stringr]; }; diffIRT = derive2 { name="diffIRT"; version="1.5"; sha256="0kip6wz9l9q80qsqwf32pwz7d9vqin6dgfwf0nxlrlzf8xjsxgim"; depends=[statmod]; }; diffMeshGP = derive2 { name="diffMeshGP"; version="0.1.0"; sha256="1dc37hxh3fi27gw11kij57j78p87bza77s82niagdv6dqhldj5a4"; depends=[]; }; - diffcor = derive2 { name="diffcor"; version="0.7.0"; sha256="1vghg12h6l0df50k18kfq6h86nf0vw7xgj46s9nycal3n7dacmmz"; depends=[]; }; + diffcor = derive2 { name="diffcor"; version="0.7.1"; sha256="0f3ybpddiaqsxv2qri7vkwqcpil824wzyxv8nih27lq3q81sv300"; depends=[]; }; diffdepprop = derive2 { name="diffdepprop"; version="0.1-9"; sha256="0mgrm1isr26v2mcm6fkzc7443ji00vpnqmw4zngx81n7442b3cl2"; depends=[gee PropCIs rootSolve]; }; diffdf = derive2 { name="diffdf"; version="1.0.4"; sha256="03cr0gvspchdj49kiggsm6i9h5d9z07aswggj4n46lnyz52ihivj"; depends=[tibble]; }; diffeR = derive2 { name="diffeR"; version="0.0-6"; sha256="0ivdcfirs3jbd6m3rryq590szkhplm2kr9chjgcgd88ar5nrqfg7"; depends=[ggplot2 raster reshape2 rgdal]; }; + diffeRenTES = derive2 { name="diffeRenTES"; version="0.3.2"; sha256="1904zg9ynf873cqkww2ii4k60cr1bi9km67dxvgsc2bd8dxkm9ks"; depends=[BoolNet DOT igraph]; }; diffee = derive2 { name="diffee"; version="1.1.0"; sha256="01lb1prz70mxgymhhsvx48kbfy69xyyaabsmfhf28af9wfb89662"; depends=[igraph pcaPP]; }; diffeqr = derive2 { name="diffeqr"; version="1.1.1"; sha256="1wkbb3nm0vjjk1pbfsbr167s038gqsb5mcpzj05wkk57b649nrhk"; depends=[JuliaCall]; }; diffmatchpatch = derive2 { name="diffmatchpatch"; version="0.1.0"; sha256="064p2xzv0x890pw24lm9fmafp0x93f3yv77ms2zabzlclfylzzb7"; depends=[cli Rcpp]; }; @@ -8340,7 +8133,6 @@ in with self; { discharge = derive2 { name="discharge"; version="1.0.0"; sha256="1hwsdrbajmpfdc9arb1pjhx2w45dy3zrba9ibcrnpyqhhr4i1c5m"; depends=[boot checkmate CircStats ggplot2 lmom]; }; disclap = derive2 { name="disclap"; version="1.5.1"; sha256="0qsycr04xz1h90jyzxwagfkc4rkc8mb9srasvhrp7grynjxlbb9f"; depends=[]; }; disclapmix = derive2 { name="disclapmix"; version="1.7.3"; sha256="0hh20ff3szh9s9r1hdymk73ysn0v5lh2gfzgqpvfvdhcc5z8xjk7"; depends=[cluster disclap MASS Rcpp RcppProgress]; }; - discnorm = derive2 { name="discnorm"; version="0.2.0"; sha256="08pgn5lr7qr2i2iyyrpivibd4mr9p5dgg0agbdqgzk5zjchhpk4a"; depends=[arules copula cubature GoFKernel lavaan MASS mnormt pbivnorm sirt]; }; disco = derive2 { name="disco"; version="0.6"; sha256="1abvhf0yb4mw02j1krjb7q68jpwdnl2narcalf3vkjcbflcp76z3"; depends=[ggplot2 RColorBrewer tmod]; }; discord = derive2 { name="discord"; version="1.1.0"; sha256="0is9gwj09zj25hklsxgi3k7ypq2qp2yx0vir6wgpnd30wa11zs5h"; depends=[]; }; discourseGT = derive2 { name="discourseGT"; version="1.1.7"; sha256="1nfc1v39y4af5l4zmp00dhp4bzp10wq107gx5ggrvpq9q2nn4hwd"; depends=[dplyr GGally ggplot2 ggrepel igraph network]; }; @@ -8358,9 +8150,8 @@ in with self; { diskImageR = derive2 { name="diskImageR"; version="1.0.0"; sha256="1r19k5fdjn6vkn11p5df77fnxfqaz3nciiaai0f3pr2bgpfppzka"; depends=[subplex zoo]; }; dismo = derive2 { name="dismo"; version="1.3-5"; sha256="1rqf6h4imbqvs7hjd1k4my6154wg0qnmnp5byan403rcshr1jbl1"; depends=[raster Rcpp sp terra]; }; disordR = derive2 { name="disordR"; version="0.0-9"; sha256="1x9lvdwgvi6gmjfgl03ccqkjpmibz3kswlqnw8flj7x2sx969i4h"; depends=[digest]; }; - dispRity = derive2 { name="dispRity"; version="1.6.8"; sha256="0jg3jmpdfr48hgia7rgdnnqx5w7vcypnamfnqbw886mxxwkq50z0"; depends=[ade4 ape castor Claddis geiger geometry geoscale mnormt phangorn phyclust scales vegan]; }; + dispRity = derive2 { name="dispRity"; version="1.6.9"; sha256="0kflaca6k69nwc900qgafa1srp7njvsxmaa0l8r0yamm0hdl2xfd"; depends=[ade4 ape castor Claddis geometry geoscale MASS mnormt phangorn phyclust scales vegan]; }; disparityfilter = derive2 { name="disparityfilter"; version="2.2.3"; sha256="0dkk3qws631mf0g02di5rsrvh5954cykysyri0g8aqgik0j9dg06"; depends=[igraph]; }; - displayHTS = derive2 { name="displayHTS"; version="1.0"; sha256="0mqfdyvn2c5c3204ykyq29ydldsq0kb3a1d7mrzqr7cvrj1ahlqa"; depends=[]; }; dispmod = derive2 { name="dispmod"; version="1.2"; sha256="16r6is0pchzc9mxpz0c44f72j76vsh3j9damalcxajrha06dkdq4"; depends=[]; }; disposables = derive2 { name="disposables"; version="1.0.3"; sha256="0q5wacjclspn2fh7z1pg2l67ll51n75wck5h2fdq2vxy3qn3vwis"; depends=[]; }; dispositionEffect = derive2 { name="dispositionEffect"; version="1.0.0"; sha256="0vx87xylpx3np6afwwylzwp0nb9g8r04ngn8mgr88ycys815fkqw"; depends=[dplyr lubridate magrittr progress purrr rlang]; }; @@ -8378,7 +8169,7 @@ in with self; { distcrete = derive2 { name="distcrete"; version="1.0.3"; sha256="0sa6z2mpmk51ig1r7bmpbyv2jd8z6z7mixki2vlq1kybg8cx3wmi"; depends=[]; }; distdichoR = derive2 { name="distdichoR"; version="0.1-1"; sha256="0v19m3n1jgipg65yrv75rm4v27b5aq58cbsmbp7lxvfxmj5ra328"; depends=[boot emmeans nlme sn]; }; distfree_cr = derive2 { name="distfree.cr"; version="1.5.1"; sha256="0h7cywxnasxmqnl9f2f9wp4viwvv72hjx2drr78prqy3nn3lvqwx"; depends=[]; }; - distill = derive2 { name="distill"; version="1.3"; sha256="1jqh4l0gcqbw14s0282nc6hnbvgqx7dnpixfs997n54abh3b2i35"; depends=[base64enc bookdown digest downlit htmltools jsonlite knitr lubridate mime openssl png rmarkdown rprojroot rstudioapi stringr whisker xfun xml2 yaml]; }; + distill = derive2 { name="distill"; version="1.4"; sha256="08c402d7ii944r1164z1wl8g8w0y0yr61qmc75zspvi1h3g14xal"; depends=[base64enc bookdown digest downlit htmltools jsonlite knitr lubridate mime openssl png rmarkdown rprojroot rstudioapi stringr whisker xfun xml2 yaml]; }; distillery = derive2 { name="distillery"; version="1.2-1"; sha256="1ymmxyamkq0zbz2m4gllln1ihks2hcib6gs0mls92as79srz122b"; depends=[]; }; disto = derive2 { name="disto"; version="0.2.0"; sha256="09pafy8y1ifgglqmal32dy34acx06ypsq2bgwsn6fjiqr9kw401j"; depends=[assertthat broom dplyr factoextra fastcluster fastmatch ggplot2 pbapply proxy tidyr]; }; distory = derive2 { name="distory"; version="1.4.4"; sha256="1ljrs91h4v1h5lb295hjki8bmra2lg3d1bn5x731pnv43pf3ck06"; depends=[ape]; }; @@ -8391,7 +8182,7 @@ in with self; { distrRmetrics = derive2 { name="distrRmetrics"; version="2.8.0"; sha256="17kbl8b4q8w7il1f02yqr11filhbd5axjwwna20gvjim501jizwi"; depends=[distr fBasics fGarch startupmsg]; }; distrSim = derive2 { name="distrSim"; version="2.8.0"; sha256="0g16mljlz7fnb5k6c9h5vplm3n51sdbybv9cifbia0y6p9zml383"; depends=[distr setRNG startupmsg]; }; distrTEst = derive2 { name="distrTEst"; version="2.8.0"; sha256="06rdcwfgbhc81zqisg414nj0kji59xvhm782b63hk54a8b2zwhh5"; depends=[distrSim setRNG startupmsg]; }; - distrTeach = derive2 { name="distrTeach"; version="2.8.0"; sha256="1qgkd4yipk29q8k334fz97n6dxlxnsback7v5a05m6ragc37wzag"; depends=[distr distrEx startupmsg]; }; + distrTeach = derive2 { name="distrTeach"; version="2.8.1"; sha256="0ssy72clpffby4b07ynvmyfm5q4m93c204v70w5428kkjq6imf5w"; depends=[distr distrEx startupmsg]; }; distreg_vis = derive2 { name="distreg.vis"; version="1.7.3"; sha256="1dnpcd0dpbgvnwcc83n15gr9risyzvnp5f45wg11l9fp5yi63s8j"; depends=[bamlss betareg formatR gamlss gamlss_dist ggplot2 magrittr rhandsontable shiny]; }; distribglm = derive2 { name="distribglm"; version="0.4.1"; sha256="09gpkp7s8y2dcpjhqgi2nl6j8pmd500y89d8c8x8sxmh5mg8n5si"; depends=[readr]; }; distributional = derive2 { name="distributional"; version="0.3.0"; sha256="1mji8xlhwrw8msih5wdpbzwv4g59kly0xkdklhn8yzb18rrnrczs"; depends=[digest ellipsis farver generics ggplot2 lifecycle numDeriv rlang scales vctrs]; }; @@ -8423,15 +8214,15 @@ in with self; { dlib = derive2 { name="dlib"; version="1.0.3.1"; sha256="1rchl4f3zj0azz8d4n139daba2gz6vnm60jq45vgc9gphk2mrnnb"; depends=[Rcpp]; }; dlm = derive2 { name="dlm"; version="1.1-5"; sha256="1aksm66sfa7ipl5xgs4j5giac7q2m744wjl40mva56xn6i674h4r"; depends=[]; }; dlnm = derive2 { name="dlnm"; version="2.4.7"; sha256="0mbww28n95vnd6wrn1b4mfsdvnyffa8mr6ws4jqmqdc23nydl9p4"; depends=[mgcv nlme tsModel]; }; - dlookr = derive2 { name="dlookr"; version="0.5.5"; sha256="0p7capcj3q6am54bhxbvb3fxv9iwgyjkx8r7zy1bpb5wpbkbq8ak"; depends=[dplyr ggplot2 gridExtra hrbrthemes htmltools kableExtra knitr mice pagedown partykit purrr reactable rlang rmarkdown shiny showtext sysfonts tibble tidyr tidyselect]; }; + dlookr = derive2 { name="dlookr"; version="0.5.6"; sha256="15bh680qa8l2r7fwbd6mb55yzk3jb6zrhyankf0mgnzmcrqwh1hw"; depends=[dplyr ggplot2 gridExtra hrbrthemes htmltools kableExtra knitr mice pagedown partykit purrr reactable rlang rmarkdown shiny showtext sysfonts tibble tidyr tidyselect]; }; dlr = derive2 { name="dlr"; version="1.0.1"; sha256="13gr8rk8igbypq9mg00pyk2pjczxr1ghkj5287gijxnxch7zdknc"; depends=[digest fs rappdirs rlang]; }; dlsem = derive2 { name="dlsem"; version="2.4.6"; sha256="1h3bwqqpfjkl41b2mbfhsj0pi9kri0h0i28wiid6arjrmm87nsf8"; depends=[graph Rgraphviz]; }; - dlstats = derive2 { name="dlstats"; version="0.1.4"; sha256="1j415v3kajn269md046b05pwklqwm4rwk2f7q3mwax9yx4m5nc0n"; depends=[ggplot2 jsonlite magrittr RColorBrewer scales]; }; - dm = derive2 { name="dm"; version="0.2.7"; sha256="1fh34vgpr8w1kr7w667mzalg014lm1h82jr3gl1w0s5x93w3qi06"; depends=[backports cli DBI dplyr ellipsis glue igraph lifecycle magrittr memoise pillar purrr rlang tibble tidyr tidyselect vctrs]; }; + dlstats = derive2 { name="dlstats"; version="0.1.5"; sha256="00lk6fnyziaqz3hc5jvdybgsywlad755dcr9l41aqwx6gx2k1wrg"; depends=[ggplot2 jsonlite magrittr RColorBrewer scales]; }; + dm = derive2 { name="dm"; version="0.2.8"; sha256="1zz1bwgf039hqkcn1ncpgiin8ysgfg3493grwdhgrlrfdlacc7p9"; depends=[backports cli DBI dplyr ellipsis glue igraph lifecycle magrittr memoise pillar purrr rlang tibble tidyr tidyselect vctrs]; }; dma = derive2 { name="dma"; version="1.4-0"; sha256="003snr09hazszwqnvjrbv8vyz6ihgcfcfhrlshg451dddn920615"; depends=[MASS]; }; dmai = derive2 { name="dmai"; version="0.4.0"; sha256="0ma89jl0l598sffpikvjj40f2djjcnjq29k6y1bav4dm2g51qgmq"; depends=[dplyr ggplot2 magrittr stringr tibble tidyr]; }; - dmbc = derive2 { name="dmbc"; version="1.0.0"; sha256="0hfcc12v73c0x11jvp0pm2ddm2qd1fdv8667k67r7d1zi0cp2i5g"; depends=[abind bayesplot coda ggplot2 ggrepel MCMCpack modeltools pcaPP Rcpp RcppArmadillo RcppProgress robustbase]; }; - dmdScheme = derive2 { name="dmdScheme"; version="1.3.1"; sha256="1h7gbgjpwrlz2lhicikkzl9xya5iz4dg019snnkb403nmy8p00kf"; depends=[digest EML knitr magrittr rappdirs readxl rlang rmarkdown stringr writexl xml2 yaml]; }; + dmbc = derive2 { name="dmbc"; version="1.0.1"; sha256="08kw193792v20qh9c8n16jx2q4rrj5lar3zbp6q8rw57mim962lb"; depends=[abind bayesplot coda ggplot2 ggrepel MCMCpack modeltools Rcpp RcppArmadillo RcppProgress robustbase robustX]; }; + dmdScheme = derive2 { name="dmdScheme"; version="1.3.3"; sha256="1laa19cj3lcc10c4ygl89g035f9xlynirgds76f6hv1db5wnxbrv"; depends=[digest EML knitr magrittr rappdirs readxl rlang rmarkdown stringr writexl xml2 yaml]; }; dml = derive2 { name="dml"; version="1.1.0"; sha256="0z1dalgxh5nhrac49vh60d5awzjylc8b8mn5fk379c324milm59l"; depends=[lfda MASS]; }; dmlalg = derive2 { name="dmlalg"; version="1.0.2"; sha256="1ixjpalg3q0wnddrli6v66kky3pxf90sjgiia8jhk4nds0h58a72"; depends=[glmnet lme4 matrixcalc randomForest]; }; dmm = derive2 { name="dmm"; version="2.1-7"; sha256="0zn7d2lr2vig8q6h5dd5zk7ra1f0mkm6pszl3v06aghcflg63ng3"; depends=[MASS Matrix nadiv pls robustbase]; }; @@ -8439,14 +8230,13 @@ in with self; { dmt = derive2 { name="dmt"; version="0.8.20"; sha256="0rwc8l9k2y46hslsb3y8a1g2yjxalcvp1l3v7jix0c5kz2q7917w"; depends=[MASS Matrix mvtnorm]; }; dmtools = derive2 { name="dmtools"; version="0.2.6"; sha256="0z77whal18sxmfqalv39w85vnc84c838yh3dp144v7w198n095fy"; depends=[dplyr httr lubridate magrittr progress purrr readxl tibble tidyr]; }; dmutate = derive2 { name="dmutate"; version="0.1.3"; sha256="1dxx4v9fg0cd2m5lwk3j6n9g6n9zqr7rs75yiz3m3q8cpw1pjqpk"; depends=[dplyr MASS]; }; - dna = derive2 { name="dna"; version="2.1-2"; sha256="0l7i9640yd25cbxd3vbmlsqgk3pi2f7v6g5q0lrgycxl7jla9v1k"; depends=[]; }; - dnapath = derive2 { name="dnapath"; version="0.6.11"; sha256="03l391rfi7d5953nfnmywbq844dg90jnz5wbxbnylm7d5r8cj4vv"; depends=[corpcor curl dplyr ggplot2 igraph Rcpp RcppArmadillo Rdpack SeqNet tibble]; }; + dnapath = derive2 { name="dnapath"; version="0.7.4"; sha256="1xpx981sws51kyryc2frsn9ppd55xbkz0rz9v5qbxc3rhpa8f01g"; depends=[corpcor curl dplyr ggplot2 gtools igraph Rcpp RcppArmadillo Rdpack SeqNet tibble wCorr]; }; dnet = derive2 { name="dnet"; version="1.1.7"; sha256="05mqgp8x2h6vjf8j9466kpng7bbga134c2y808qgdmjdnv9fcaxc"; depends=[graph igraph Matrix Rgraphviz supraHex]; }; dng = derive2 { name="dng"; version="0.2.1"; sha256="0yi1fs4yvlsy3j128l7s5kwq8mhdd5fr74y2bzj7cjrxi7wgz2hg"; depends=[Rcpp]; }; dnr = derive2 { name="dnr"; version="0.3.5"; sha256="16s06jvwmvhxgvrmfav1xfszjrn7j2cm4jw5xyx6w5lb5434kzcq"; depends=[arm ergm glmnet igraph network sna]; }; do = derive2 { name="do"; version="2.0.0.0"; sha256="16c6ksdas678k1285vk526ga3qkfb658nq4j5z9safjkyl1d5lrp"; depends=[crayon data_table desc httr openxlsx plyr reshape2 rstudioapi rvest stringr tidyr tidyselect tmcn usethis xml2]; }; - doBy = derive2 { name="doBy"; version="4.6.12"; sha256="1m60ya4cdickqsj0dc90bv4n47df6qg6n82fikxrkl4yhg7yyn1i"; depends=[broom Deriv dplyr ggplot2 magrittr MASS Matrix microbenchmark pbkrtest tibble]; }; - doFuture = derive2 { name="doFuture"; version="0.12.1"; sha256="0fhk32ih9cbwxw3mvkddqjv0dsaw9xk8qjdslfcabvmixhnh3s6m"; depends=[foreach future globals iterators]; }; + doBy = derive2 { name="doBy"; version="4.6.13"; sha256="0qnfcw4rg5kd1mll3rq6vchz3lgdqfif9469p8x6ixsgrxxpivbz"; depends=[broom Deriv dplyr ggplot2 magrittr MASS Matrix microbenchmark pbkrtest tibble]; }; + doFuture = derive2 { name="doFuture"; version="0.12.2"; sha256="0w07pmzpsfq4kvfc745s1i9b6dfn1df1wrfi4s9ys4ir3g2s8nk1"; depends=[foreach future globals iterators]; }; doMC = derive2 { name="doMC"; version="1.3.8"; sha256="18qrcvqwm4cclvk8spvyi281y8prwzivj52xmzk1l9a82j2ny65j"; depends=[foreach iterators]; }; doMIsaul = derive2 { name="doMIsaul"; version="1.0.1"; sha256="17a363gj8hsdpga6b07c4lzrswgf553dfqxacv2jfx0rswxnrsb0"; depends=[aricode arules clusterCrit dplyr ggplot2 Gmedian MASS mice NbClust ncvreg plyr scales survival withr]; }; doMPI = derive2 { name="doMPI"; version="0.2.2"; sha256="0ahwm17p3gq1yvc8v6sr6sb8z7i6zws8d1pf46qynl0gd4amg938"; depends=[foreach iterators Rmpi]; }; @@ -8467,27 +8257,24 @@ in with self; { docreview = derive2 { name="docreview"; version="0.0.1"; sha256="0cmgl1q1whb38iiljaz0f5vyxniyaaxm8xpbzd56cayqgbvl92b8"; depends=[cli parsermd purrr quanteda quanteda_textstats rlang stringr yaml]; }; docstring = derive2 { name="docstring"; version="1.0.0"; sha256="19z5frhxbdc5c4vrkckgqbh9mx4d9w1icw8szsw9yadvbg48nlhl"; depends=[roxygen2]; }; docuSignr = derive2 { name="docuSignr"; version="0.0.3"; sha256="0q90z31svbdnvylfr0yj2f0gahvpi089c1d5llvwqy8qc5p9fbqw"; depends=[httr jsonlite magrittr]; }; - documair = derive2 { name="documair"; version="0.6-0"; sha256="1pphcbx90n9xn8a7gvfrwzfapwqgpbl3gg2grm7chfxgcp7i99i2"; depends=[]; }; document = derive2 { name="document"; version="3.3.3"; sha256="1gbfmy4nvnxrfazpi17v33afhpvgkmk54p74dpf4jvl2ria0byn7"; depends=[callr checkmate desc rcmdcheck roxygen2 rstudioapi withr]; }; - documenter = derive2 { name="documenter"; version="0.1.1"; sha256="0y6zrvmb9bhc1ni4v89h9pq5ara8p2v4b35ylasia5s9x1y93mcp"; depends=[htmltools magrittr officer xml2 yaml]; }; + documenter = derive2 { name="documenter"; version="0.1.2"; sha256="1q04b95h6va3178lwp56zc45vh838vxl071w1ym60n5v6v4jsc4f"; depends=[htmltools magrittr officer xml2 yaml]; }; docxtools = derive2 { name="docxtools"; version="0.2.2"; sha256="0ds8qy21x7cq9qmnn6gggzf8kxdphq7nf2mx5gqx829zgkripsfq"; depends=[dplyr ggplot2 lubridate purrr rlang stringr tidyr]; }; docxtractr = derive2 { name="docxtractr"; version="0.6.5"; sha256="1kki49g0sfhbx2d4swrkv21akws8ayrsd4h3v148xmzdlsrvhhiw"; depends=[dplyr httr magrittr purrr xml2]; }; dodgr = derive2 { name="dodgr"; version="0.2.13"; sha256="135f76jlj18lm6fpn1k4vjc1vh8v41ww43rrbqjbm1k4gfgqqah5"; depends=[callr digest fs magrittr osmdata Rcpp RcppParallel RcppThread]; }; doebioresearch = derive2 { name="doebioresearch"; version="0.1.0"; sha256="1rmvb6pa71frvjszpsjaw3ahm70kyykrq6zfjqk8smgcg397k9pi"; depends=[agricolae]; }; doex = derive2 { name="doex"; version="1.2"; sha256="1r999z30ipa04pgck0hfalqxihb1bj8sdhlkkhf4plb7maaz3qm3"; depends=[]; }; - dominanceanalysis = derive2 { name="dominanceanalysis"; version="2.0.0"; sha256="0qxldvlgbysy9j17kb0a9p132a04a4j12h4m0r70zv2752fj24c0"; depends=[]; }; domino = derive2 { name="domino"; version="0.3.1"; sha256="0f67w0z5jy82kgm3l1rji430ayigw30vmmwp3i1nz0xibsx7jxv4"; depends=[]; }; - domir = derive2 { name="domir"; version="0.3.0"; sha256="141xs38j0cdrygqv7pdrbrbfa7b74dgk01d6apxvk3lafy1b8fqv"; depends=[]; }; + domir = derive2 { name="domir"; version="0.3.2"; sha256="1cn1zkns0yghbrwm92g7y77lyx3hnkgwgk4zn1hhdjrbfnfak8b6"; depends=[]; }; donut = derive2 { name="donut"; version="1.0.2"; sha256="0idynkhcdn9va32m1n1rxjyb7ghbkhyy1959wks2bn1a7k4yg87i"; depends=[]; }; - doolkit = derive2 { name="doolkit"; version="1.0.1"; sha256="09kgd1ca1aacvh9gjfns85m36zl5bj095j21avn1jgp8h5mk7301"; depends=[concaveman ggplot2 igraph MASS Morpho rgl Rvcg sp tis usethis]; }; + doolkit = derive2 { name="doolkit"; version="1.42.1"; sha256="0hc60a9g0bvrwx4099c0y8f6fsmmnck2097y7k21gx9kirahgd7g"; depends=[concaveman ggplot2 igraph MASS Morpho rgl Rvcg sp tis usethis]; }; doremi = derive2 { name="doremi"; version="1.0.0"; sha256="005kp6f4jh8y1ykhri3mjnvc9w66b1a51bji574rkbxd1ans6mal"; depends=[data_table deSolve futile_logger ggplot2 gridExtra lme4 lmerTest zoo]; }; dosearch = derive2 { name="dosearch"; version="1.0.8"; sha256="1jymk03snrfmr9da7h7l9823mzlcn6y4z6ay6nzi82n08d9xmp06"; depends=[Rcpp]; }; dosedesignR = derive2 { name="dosedesignR"; version="0.2.4"; sha256="0c8rilx4afih457f9gafgijm569g366lp4wms0vhc0f9kgr1z8h3"; depends=[DoseFinding DT ggplot2 lattice latticeExtra shiny shinyjs]; }; doseminer = derive2 { name="doseminer"; version="0.1.2"; sha256="0y03k14adyqf0cyzqrr4rk47dabwgzzjkxbf11a5b8xlyy19mjr1"; depends=[magrittr stringr]; }; dosresmeta = derive2 { name="dosresmeta"; version="2.0.1"; sha256="0qdalzdk7q4wx3vl5f3i64m8cb7vhi4pqzghar32j0a7l6gla04z"; depends=[mvmeta]; }; - dostats = derive2 { name="dostats"; version="1.3.2"; sha256="15j9sik9j5pic5wrp0w26xkrhi337xkbikw0k7sa4yfimw6f84w5"; depends=[]; }; + dostats = derive2 { name="dostats"; version="1.3.3"; sha256="0nq5965rlpvad8wyz3yr98wxy4w7jb4v4xfbbfa6c2vnc6w7w884"; depends=[]; }; dotCall64 = derive2 { name="dotCall64"; version="1.0-1"; sha256="1im5k8jbviwj2i42mq1kmjskh80isa7jr9w8i0fknidrzzy2h2zi"; depends=[]; }; - dotdot = derive2 { name="dotdot"; version="0.1.0"; sha256="0d8inv2m7pkk6dnv9j9zai4lhghcg656l46d00rhp604rbhzlmw9"; depends=[]; }; dotenv = derive2 { name="dotenv"; version="1.0.3"; sha256="0dclwqg2hxdly8z3cckcskcll3dfax6g14h1xzjzdfwahhrbr5wb"; depends=[]; }; dotgen = derive2 { name="dotgen"; version="0.1.0"; sha256="12dvn52ggmkj2q6whi8s2hh9fpg7jcg20bgx32jxzh4cb1zxnksz"; depends=[mvtnorm]; }; dotprofile = derive2 { name="dotprofile"; version="0.0.1"; sha256="10vm8s1sk4i2930zzswgwy1y873x8byfr7xfb8xq6cdk9ci7l741"; depends=[cli R6]; }; @@ -8501,14 +8288,13 @@ in with self; { downscale = derive2 { name="downscale"; version="4.2-0"; sha256="1ha36jiahvrg75qwzp9wpgnqqizw6ivc02q24fyz5frzssda6wd8"; depends=[cubature minpack_lm raster Rmpfr sp]; }; downscaledl = derive2 { name="downscaledl"; version="1.0"; sha256="0lqxngzpxj65b48j5w0n8dg6fp4lgg5zpgxc2wj6d9wh5f97l71b"; depends=[dplyr keras magrittr raster Rcpp RcppArmadillo rgdal rstack sp tensorflow]; }; downsize = derive2 { name="downsize"; version="0.2.2"; sha256="18b9shd79z0bsdnp0apqqwv6c73j4wnfiv41ywqz761nmxbldxbn"; depends=[magrittr R_utils]; }; - dowser = derive2 { name="dowser"; version="0.1.0"; sha256="1k85m4xm1kkkzk19kxim83i3pbl22mz2lql4cw0ml7wmx0m1pva9"; depends=[alakazam ape Biostrings dplyr ggplot2 ggtree gridExtra markdown phangorn phylotate RColorBrewer rlang shazam stringr tidyr tidyselect]; }; + dowser = derive2 { name="dowser"; version="1.0.0"; sha256="1adfrry88776x00a4xg51nlr618232lznbapq6fx5iqc6rvxslmb"; depends=[alakazam ape Biostrings dplyr ggplot2 ggtree gridExtra markdown phangorn phylotate RColorBrewer rlang shazam stringr tidyr tidyselect]; }; dparser = derive2 { name="dparser"; version="1.3.1-5"; sha256="0xb2mjgmhn91jyragxscq6p41wa59119w5m138q523zi1ca8q1jc"; depends=[digest]; }; dpcc = derive2 { name="dpcc"; version="1.0.0"; sha256="1f4c68bvkwg82k1zanjhqqika2bfjv83mbr2khl5lhvfjwvpi1m0"; depends=[Rcpp]; }; - dpcid = derive2 { name="dpcid"; version="1.0"; sha256="1gx8gyrxvm07mjiasl0b80y0x3crq6gy170v6s817d11jw44n86z"; depends=[]; }; dplR = derive2 { name="dplR"; version="1.7.2"; sha256="1g57azixwv3c6x60l1kqdnzylf0ayv3s15wi0av2qcca35z3baa1"; depends=[digest lattice Matrix matrixStats plyr png R_utils signal stringi stringr XML]; }; dplRCon = derive2 { name="dplRCon"; version="1.0"; sha256="10xnawgnhxp5y949fxs1vvadc1qz2ldy0s9w9w7kf6iqh59d35sw"; depends=[]; }; dplbnDE = derive2 { name="dplbnDE"; version="0.1.1"; sha256="0hwb4lvydqlkbcxp3jwgzkqk6sqdjkcmkya1cah60sc15n816ksd"; depends=[bnclassify]; }; - dplyr = derive2 { name="dplyr"; version="1.0.8"; sha256="0xb04ckp29pva1h2rfahqhmk9gcwp2dbbx3av8ip40v7dnha6siv"; depends=[generics glue lifecycle magrittr pillar R6 rlang tibble tidyselect vctrs]; }; + dplyr = derive2 { name="dplyr"; version="1.0.9"; sha256="0sxl9yzccsdhlrrwj26lmh9frsijxyfaf7csv8mf7d0q4qqzgqg2"; depends=[generics glue lifecycle magrittr pillar R6 rlang tibble tidyselect vctrs]; }; dplyr_teradata = derive2 { name="dplyr.teradata"; version="0.4.1"; sha256="0ygn8cq4dnmzzxfskcir7g0bksgby5sw2j135gvrk599z3v6avg1"; depends=[bit64 DBI dbplyr dplyr odbc]; }; dplyrAssist = derive2 { name="dplyrAssist"; version="0.1.0"; sha256="1lqizh70b1apyr4578917gv6s0i7p84ak96a57kvwipmh36a4ywn"; depends=[DT magrittr miniUI plyr rstudioapi shiny shinyAce shinyWidgets stringr tidyr tidyverse]; }; dpmr = derive2 { name="dpmr"; version="0.1.9"; sha256="1cnjywkvjb4fhbf4shjmsrq47f1fg2x21hcm1q5512bm0wg9i6jd"; depends=[digest httr jsonlite magrittr rio]; }; @@ -8519,14 +8305,14 @@ in with self; { dr = derive2 { name="dr"; version="3.0.10"; sha256="0dmz4h7biwrn480i66f6jm3c6p4pjvfv24pw1aixvab2vcdkqlnf"; depends=[MASS]; }; dr4pl = derive2 { name="dr4pl"; version="2.0.0"; sha256="1nmy8mxxrmwzw826wvnn4rrm64xal9jr160yqiqj41zmb241q4b6"; depends=[generics ggplot2 glue Matrix Rdpack rlang tensor]; }; dracor = derive2 { name="dracor"; version="0.2.4"; sha256="0q7kwv60q32gj1b48r3ha0d539ddhw9jz3n62wvc8jr1na1v52lh"; depends=[Rcpp]; }; - dragon = derive2 { name="dragon"; version="1.2.0"; sha256="0sgd5a6afnf6w3sqwhsz2c4dmc569m40ck6bssb27c0szkhq9jya"; depends=[broom colorspace colourpicker config cowplot curl dplyr DT future ggforce ggplot2 golem htmltools igraph lubridate magrittr openxlsx promises purrr RColorBrewer readr rlang rvest shiny shinydashboard shinyWidgets stringr tibble tidyr tidyselect visNetwork xml2]; }; + dragon = derive2 { name="dragon"; version="1.2.1"; sha256="03y92kmbc3n1qf6h63fxkv1x1mq0sm6hi8b9y34489rib65rynx5"; depends=[broom colorspace colourpicker config cowplot curl dplyr DT future ggforce ggplot2 golem htmltools igraph lubridate magrittr openxlsx promises purrr RColorBrewer readr rlang rvest shiny shinydashboard shinyWidgets stringr tibble tidyr tidyselect visNetwork xml2]; }; dragonking = derive2 { name="dragonking"; version="0.1.0"; sha256="01b01wd1s2b8sa9f0kfbf2pbzhaqra7xxskigqh3vlj389xqm1id"; depends=[]; }; - dragracer = derive2 { name="dragracer"; version="0.1.6"; sha256="16sf5a22mqk42v3f8r54aqy4jl7jwzd4ijx7xv5lpg93vvinynqk"; depends=[]; }; + dragracer = derive2 { name="dragracer"; version="0.1.7"; sha256="0ka3p72c3brrla7dawm4anyr073kgiy39ip5bdig9888gwiwjccq"; depends=[]; }; dragulaR = derive2 { name="dragulaR"; version="0.3.1"; sha256="1cw5v7m1b4pxsizsjb3zdzhydxj577p6q5fcjklsvpzmiixzlyav"; depends=[htmlwidgets shiny shinyjs]; }; drake = derive2 { name="drake"; version="7.13.3"; sha256="0b167wj1r37rgfp3kq7y475920334ix52ckxcygyivb9y3zzdnmh"; depends=[base64url digest igraph rlang storr tidyselect txtq vctrs]; }; - drat = derive2 { name="drat"; version="0.2.2"; sha256="1ck2m2993p0wmw9rnkf19pr4g0chb0vi03ykdr348bli0zj68jqg"; depends=[]; }; + drat = derive2 { name="drat"; version="0.2.3"; sha256="191yxlj9jccakmz27g7n9izfcy19kj3fgnw4w6zl9iq66787qpm6"; depends=[]; }; draw = derive2 { name="draw"; version="1.0.0"; sha256="0kbz8rcgygl4fhmljzaan5jl7wjvfljcaykm7q9lw9s6m78p06gz"; depends=[]; }; - drawer = derive2 { name="drawer"; version="0.1.0"; sha256="1h8z852a8dwbqn3in4ycmkf1h7599z5zmfklw6538xfawhxf614w"; depends=[bsplus glue htmltools magrittr shiny stringr]; }; + drawer = derive2 { name="drawer"; version="0.2.0.0"; sha256="0njxjqk037fm19qv5bnygw9acm482zdmipmz45zac8j02v81mgpk"; depends=[bsplus glue htmltools magrittr shiny stringr]; }; drawsample = derive2 { name="drawsample"; version="1.0.0"; sha256="0ygar9753vj2n4v19mf8qcqmrqnxs0czgy0bxbcszb4n5x6rmhq5"; depends=[dplyr lattice magrittr moments psych purrr readxl rlang shiny shinycssloaders shinydashboard tibble xlsx]; }; drc = derive2 { name="drc"; version="3.0-1"; sha256="0c8xn8ripzq270hy8d16fcnx02l02alddznd7fqwk3jyi6113h1y"; depends=[car gtools MASS multcomp plotrix scales]; }; drda = derive2 { name="drda"; version="1.0.0"; sha256="117awm7sir4kcalxw17a1rm2wk2xn9whpsgnnjm5771g2fpbkan2"; depends=[]; }; @@ -8546,6 +8332,7 @@ in with self; { drord = derive2 { name="drord"; version="1.0.1"; sha256="0xi85s6y78d54qv3cw7q72dz5kcs8cc8nyjyaxr5h6pfpzi2l8i9"; depends=[ggplot2 MASS ordinal VGAM]; }; drought = derive2 { name="drought"; version="1.1"; sha256="1i064bg7b29agnj2cq5gl61z12xx1a3lkzfg31sly3alzpvciwr9"; depends=[copula corrplot]; }; drpop = derive2 { name="drpop"; version="0.0.3"; sha256="1gh0w1a59070g9mmck4fp9591vfw23c5nlj3jrkxwarp4vfy1dqp"; depends=[dplyr gam ggplot2 janitor nnet nnls ranger reshape2 stringr SuperLearner tidyr]; }; + drtmle = derive2 { name="drtmle"; version="1.1.1"; sha256="12vplpz9bg5444jy29mbdr70hqby073vb3iw76v2csrwy3ws3f21"; depends=[future_apply np SuperLearner]; }; drugprepr = derive2 { name="drugprepr"; version="0.0.4"; sha256="07401dqw4krqh3rv7y13526n0xjdlaw14gcxwranksjchmqjd3ij"; depends=[DescTools doseminer dplyr purrr rlang sqldf stringr tidyr]; }; drumr = derive2 { name="drumr"; version="0.1.0"; sha256="09xi3sf424bpq10fq25j209dylfbi1lfd911r44ffadkxzvp5p1s"; depends=[audio stringr]; }; ds = derive2 { name="ds"; version="4.0"; sha256="1iic5fb27cnhsa83zg28hydrhzc01i9z0711xvk95c3gv7mbfp2p"; depends=[]; }; @@ -8564,6 +8351,7 @@ in with self; { dssd = derive2 { name="dssd"; version="0.3.1"; sha256="0q98cn1hyaavzmc2kygpsab7vlzzmqwwc8avf3g1palmn9d4n8k2"; depends=[ggplot2 plot3D rgdal sf]; }; dst = derive2 { name="dst"; version="1.5.1"; sha256="08cw09hf5jx1qfmrqmhm4713gzq21p0ss3nx7qrs92mpsvprq3yc"; depends=[]; }; dstat = derive2 { name="dstat"; version="1.0.4"; sha256="023jp0xdbg200ww1gnr3fzgjqd82acag0jps7q6j6m27q11psvgz"; depends=[]; }; + dstat2x2xk = derive2 { name="dstat2x2xk"; version="0.2.0"; sha256="16qbczzjzhmsby8d2sf1xnijiczlk29xazbgl98jbfpmpfzn4q6j"; depends=[BiasedUrn]; }; dtangle = derive2 { name="dtangle"; version="2.0.9"; sha256="0yg1fbrqixqp93vdw3grvz1la5l2kidgs730qp6yihkp3260cxf3"; depends=[DEoptimR]; }; dtgiw = derive2 { name="dtgiw"; version="1.0.0"; sha256="1902rhfrnmp3550c6sqfrzs7xrrjpym0zpqhfnlffdnn42cp910r"; depends=[]; }; dti = derive2 { name="dti"; version="1.5.1"; sha256="08da7v7sl88g2jixfplvw9rc5rvlifq3fvyrgh9naa5jsmd8h5ia"; depends=[adimpro aws awsMethods gsl oro_dicom oro_nifti quadprog rgl]; }; @@ -8577,7 +8365,7 @@ in with self; { dtts = derive2 { name="dtts"; version="0.1.0"; sha256="0jha4fpx7fi9xrw0677i07ip7ydrvyq8g2lfy8g80jkfy6d6pbdd"; depends=[bit64 data_table nanotime Rcpp RcppCCTZ RcppDate]; }; dtw = derive2 { name="dtw"; version="1.22-3"; sha256="004gm4mzgdzdj807j3bwqsv5lizmnmz5jq514bdjshhkysnzjz6z"; depends=[proxy]; }; dtwSat = derive2 { name="dtwSat"; version="0.2.7"; sha256="16crcvwj1s45gkg1gl6blll64wf4676qmzrx0kv55sylq0rjlxhf"; depends=[caret data_table dtw ggplot2 lubridate mgcv plyr proxy raster RColorBrewer Rdpack reshape2 rgdal scales sp xtable zoo]; }; - dtwclust = derive2 { name="dtwclust"; version="5.5.9"; sha256="0nd3m1y89pq7chrdzcnf86kiwzb27c8lxg5gy2v50249k6zsbapf"; depends=[clue cluster dplyr dtw flexclust foreach ggplot2 ggrepel Matrix proxy Rcpp RcppArmadillo RcppParallel RcppThread reshape2 RSpectra shiny shinyjs]; }; + dtwclust = derive2 { name="dtwclust"; version="5.5.10"; sha256="0d39z4sh0w4wji9rlsh4s1r6wm4k8qa15gaipnaf7ah5d3w7mxky"; depends=[clue cluster dplyr dtw flexclust foreach ggplot2 ggrepel Matrix proxy Rcpp RcppArmadillo RcppParallel RcppThread reshape2 RSpectra shiny shinyjs]; }; dual = derive2 { name="dual"; version="0.0.3"; sha256="1alxh9mj610m7wgr6a97mpzy5ia9vzckhz6wmxyix7xh9mzbn1gw"; depends=[]; }; dualtrees = derive2 { name="dualtrees"; version="0.1.4"; sha256="05mxwiwnv48jf6ya5qmfc7g2w8wkzhk56k9g0gr2m4cpfab7d5h2"; depends=[]; }; duawranglr = derive2 { name="duawranglr"; version="0.6.7"; sha256="0hxmvyl81xlp3vv1w7462cjfa9hdz5lki0p5pn0ik7dv5aap3wbq"; depends=[digest dplyr haven readr readxl]; }; @@ -8585,13 +8373,10 @@ in with self; { duckdb = derive2 { name="duckdb"; version="0.3.2-2"; sha256="0scsv5gyz71kdrwdjqjrfrrisn1ai3bm4dr514driw5mmjmq8dac"; depends=[DBI]; }; duckduckr = derive2 { name="duckduckr"; version="1.0.0"; sha256="1wki8xvqp5hr27iafd9jbryl9faywfkdkpn0pa0afywbic39k2cm"; depends=[crul jsonlite]; }; dumbbell = derive2 { name="dumbbell"; version="0.1"; sha256="0v0b4wbfskvcnzx10z9v4rf3mq8ccswz63pd6i1z7mggnwv38ps5"; depends=[data_table dplyr ggplot2 rlang rstatix tidyr tidyverse]; }; - dummies = derive2 { name="dummies"; version="1.5.6"; sha256="01f84crqx17xd6xy55qxlvsj3knm8lhw7jl26p2rh2w3y0nvqlbm"; depends=[]; }; dummy = derive2 { name="dummy"; version="0.1.3"; sha256="081a5h33gw6ym4isy91h6mcf247c2vsdygv9ll07a3mgjcjnk79p"; depends=[]; }; dundermifflin = derive2 { name="dundermifflin"; version="0.1.1"; sha256="0rp8p4ln92kfxkczl7vi9r2jhxb1ky203s02940cjjkczsphpcc1"; depends=[crayon stringi]; }; dunn_test = derive2 { name="dunn.test"; version="1.3.5"; sha256="0lqwvyl3pyygfc73nf81gzw3zl3w43r7ki0yw2dgrzhkpb2iji4a"; depends=[]; }; - dupiR = derive2 { name="dupiR"; version="1.2"; sha256="0p649yw7iz6hnp7rqa2gk3dqkjbqx1f6fzpf1xh9088nbf3bhhz3"; depends=[plotrix]; }; dupree = derive2 { name="dupree"; version="0.3.0"; sha256="0q8c0z1yhym20rhfjrc8n03gk458z0n8axx013rcwk1vc2zwk670"; depends=[dplyr lintr magrittr purrr rlang stringdist tibble]; }; - durmod = derive2 { name="durmod"; version="1.1-4"; sha256="0d721sbxjfh00gpxd4hj8iq04awfd0pcd6bw8cv7kny21l2f3w44"; depends=[data_table mvtnorm nloptr numDeriv Rcpp]; }; dvir = derive2 { name="dvir"; version="2.1.0"; sha256="0i02q6v7aasb7khnraqh1gljnfqwvv0jw3xyr2mc37rcn94qn62b"; depends=[forrel pedprobr pedtools]; }; dvmisc = derive2 { name="dvmisc"; version="1.1.4"; sha256="01v6sixx0f3nrn6ymfifb3pvd2msfrwm21kmdv38laxq29vc4rsi"; depends=[cubature data_table dplyr ggplot2 MASS mvtnorm pracma rbenchmark Rcpp survey tab]; }; dvqcc = derive2 { name="dvqcc"; version="0.1.0"; sha256="011mwdwh046wninfjdy00wxn312ykzn90nz9fz3l7c5cw9gzzfkg"; depends=[ggplot2 tsDyn]; }; @@ -8599,9 +8384,10 @@ in with self; { dwlm = derive2 { name="dwlm"; version="0.1.0"; sha256="0n5dil9qvyy4gish3wnv8bzq0ci1p0dr2vmbbadl29jl7rd1v0rc"; depends=[]; }; dwp = derive2 { name="dwp"; version="1.0"; sha256="1q8gbn18gsgknazzvdg5qg2lzqdaz3x14w210hw06q98dfpkvfih"; depends=[boot expint GenEst gtools invgamma magrittr MASS matrixStats mvtnorm numDeriv plotrix pracma sf statmod VGAM]; }; dyads = derive2 { name="dyads"; version="1.1.4"; sha256="1k043cd3rqi89czmk0y5q9j54dhp0ndjj8jij9nww2gfqq1ydqx0"; depends=[CholWishart MASS mvtnorm RcppZiggurat Rfast]; }; - dycdtools = derive2 { name="dycdtools"; version="0.3.1"; sha256="1ax38336mnp4a42x83jf9q0hawa5grffizall4gh1iil7zm9pnfl"; depends=[dplyr ggplot2 hydroGOF lubridate ncdf4 R_utils RColorBrewer tidyr]; }; + dycdtools = derive2 { name="dycdtools"; version="0.4.1"; sha256="1zw7sbdb9fmgwspjlqwk2m5whwb0ldw7lak9i3imz2hnrra6v5w0"; depends=[dplyr ggplot2 hydroGOF lubridate ncdf4 R_utils RColorBrewer tidyr]; }; dydea = derive2 { name="dydea"; version="0.1.0"; sha256="15alr3f6wkkpjd5wmcjazi58yc8gwcqr662mjwlfg15r94fzqrlg"; depends=[Chaos01]; }; dygraphs = derive2 { name="dygraphs"; version="1.1.1.6"; sha256="022j007mzfa9k2n31yg4aizcsf571vv3jip092h23rqj03rk3ly3"; depends=[htmltools htmlwidgets magrittr xts zoo]; }; + dymo = derive2 { name="dymo"; version="1.1.0"; sha256="0s1gpi5qiafkf91awyx52qw15qs7m18bql51jibgh1lqnqgv1757"; depends=[fANCOVA ggplot2 greybox imputeTS lubridate MASS matlib modeest moments narray purrr readr scales tictoc]; }; dyn = derive2 { name="dyn"; version="0.2-9.6"; sha256="16fqv9k7yxdgybwzafjkyqm16qpgqz13lcjpi6a1nc8xbzlzh0gb"; depends=[zoo]; }; dyn_log = derive2 { name="dyn.log"; version="0.4.0"; sha256="0vlzv6zy29qhygm77kww65wpnp77a93ja13vr4p2yyychrjspqx3"; depends=[crayon glue R6 rlang stringr yaml]; }; dynBiplotGUI = derive2 { name="dynBiplotGUI"; version="1.1.6"; sha256="04026jz4vdyj2a2kry5kk5k84cy4vqqrcn328hxwnwh7r8i7klvn"; depends=[tcltk2]; }; @@ -8614,8 +8400,8 @@ in with self; { dynamic = derive2 { name="dynamic"; version="1.1.0"; sha256="15jxly44rj2x79jvps2ln0hrm1384p56yll9jk96w1vhaf3gbsxm"; depends=[dplyr ggplot2 lavaan magrittr patchwork purrr simstandard stringr tibble tidyr]; }; dynamicTreeCut = derive2 { name="dynamicTreeCut"; version="1.63-1"; sha256="1fadbql7g5r2vvlkr89nlrjxwp4yx4xrdqmv077qvmnx9vv0f4w3"; depends=[]; }; dynamichazard = derive2 { name="dynamichazard"; version="1.0.1"; sha256="0z0hyj8qrs7x5cfj20sww1rs207v4bqgz86x0nq1z7mwdrpa7b4v"; depends=[boot Rcpp RcppArmadillo survival]; }; - dynatop = derive2 { name="dynatop"; version="0.2.1"; sha256="0by0kvb1pivh5mjsf1a7qcgzz3x160cvgvwwcsynh37askxd2wf1"; depends=[R6 Rcpp xts zoo]; }; - dynatopGIS = derive2 { name="dynatopGIS"; version="0.2.1"; sha256="15k8s3nydv0kgx77czd17fjjif37jx9ys85k93d404sw7bnifhmm"; depends=[jsonlite R6 raster rgeos]; }; + dynatop = derive2 { name="dynatop"; version="0.2.2"; sha256="0683rq222r2kw703sly3ql2x230lkyxa2gdgxyrvkxbg4k10v0qi"; depends=[R6 Rcpp xts zoo]; }; + dynatopGIS = derive2 { name="dynatopGIS"; version="0.2.2"; sha256="0pmdj5qnb7jf26ba16f96qkfrs356l0s8p4xhg6nc3rrmj2zbird"; depends=[jsonlite R6 raster rgeos]; }; dyncomp = derive2 { name="dyncomp"; version="0.0.2-1"; sha256="13wp2k8nbgrbrqng2dmgy0ixgidk51wq9y7mv5pdbvdajxdsyh11"; depends=[zoo]; }; dyndimred = derive2 { name="dyndimred"; version="1.0.4"; sha256="1rj45bgms1x0zm1xjw2ylm45w9xnd68pmgb8dckzkszqg27d0fbh"; depends=[dynutils irlba lmds tibble]; }; dynetNLAResistance = derive2 { name="dynetNLAResistance"; version="0.1.0"; sha256="018y3m648ni31rlisjfnrx1d10mm48wpxanlnnxxpnqxjcywg2x8"; depends=[doParallel foreach igraph]; }; @@ -8637,12 +8423,13 @@ in with self; { dynwrap = derive2 { name="dynwrap"; version="1.2.2"; sha256="0jsikx274nyjq4w286j4wqxrwyv6hvgx923clvdm6ygng1pn1cfr"; depends=[assertthat babelwhale crayon dplyr dynparam dynutils glue igraph magrittr Matrix processx purrr readr reshape2 stringr tibble tidyr yaml]; }; e1071 = derive2 { name="e1071"; version="1.7-9"; sha256="09i2hmyf1bxansqp24p9n9djlzzarclqs173gjjv3fg0giga3ycv"; depends=[class proxy]; }; eAnalytics = derive2 { name="eAnalytics"; version="0.1.4"; sha256="15hhd4q2yxzq3a3awvk81ixa43hk519ym8ap7v1ahghyr0njnyyf"; depends=[dplyr DT energyr googleVis leaflet plotly shiny shinydashboard shinytest shinyWidgets]; }; + eBsc = derive2 { name="eBsc"; version="4.15"; sha256="0xw2fbkd4z0k9a65izhnirssnbnhmwbmby12x25mda9711acsmw5"; depends=[Brobdingnag MASS Matrix nlme Rcpp RcppArmadillo]; }; eCAR = derive2 { name="eCAR"; version="0.1.1"; sha256="01yfvvp4615vj6sdz751xkmvf5j22jk5fgrj6bhblr6xv0j25xc0"; depends=[Matrix]; }; eChem = derive2 { name="eChem"; version="1.0.0"; sha256="0wmf204hqd4s5har5l9bkcbrbmbqbb8m11w2aivi2gs98f3hy51p"; depends=[animation plot3D]; }; eDMA = derive2 { name="eDMA"; version="1.5-3"; sha256="0wyp81si6lcispqng4c7lii22qbyblvijgnlxvcsnkcxj5hpm76j"; depends=[Rcpp RcppArmadillo xts zoo]; }; eFRED = derive2 { name="eFRED"; version="0.1.0"; sha256="1sqhcwxbi2gxgznz0z3iyvllalq9qwm18bc60dr6y2wvcilagsiy"; depends=[httr jsonlite]; }; eGST = derive2 { name="eGST"; version="1.0.0"; sha256="0qi4vg0pwy55js9ww1cw85ssim3x7s2p98cjijxvlrvid8sns5bq"; depends=[MASS matrixStats mvtnorm purrr]; }; - eHOF = derive2 { name="eHOF"; version="1.11"; sha256="0g6x987fdjj130r26d2if4bqir121wqx1g4j3csnf00l17prwmbv"; depends=[lattice mgcv]; }; + eHOF = derive2 { name="eHOF"; version="1.12"; sha256="1797bf4wh8qy2qqhfmgi22a89zr39rsfmvbnvrfdvvpaf1zlrp2n"; depends=[lattice mgcv]; }; eList = derive2 { name="eList"; version="0.2.0"; sha256="1znmdksi2wzzjz0n6lrggs4ckvqq3qirdfvicxlfbm05zgnjq277"; depends=[]; }; eMLEloglin = derive2 { name="eMLEloglin"; version="1.0.1"; sha256="087zw48lykls2jcsmpqd5jkrlpr0j423snp00liszjhdpdh59saq"; depends=[lpSolveAPI]; }; eNchange = derive2 { name="eNchange"; version="1.0"; sha256="07vdi05fr6mynb86haas21izdcjiagw14p1h8n0qr1hb3klvs8n5"; depends=[ACDm doParallel foreach hawkes iterators Rcpp]; }; @@ -8657,7 +8444,7 @@ in with self; { earlygating = derive2 { name="earlygating"; version="1.1"; sha256="0wwkn30kjdg0qni05l3acbgai9j3h2mqjli49afmpd2453fpyxig"; depends=[betareg doParallel foreach]; }; earlywarnings = derive2 { name="earlywarnings"; version="1.0.59"; sha256="06j5g5lrzl4p5pb1pp79h00iqpbwralzhpzxmaiymv7j8kz87nr0"; depends=[fields ggplot2 Kendall KernSmooth lmtest moments nortest quadprog som spam tgp tseries]; }; earth = derive2 { name="earth"; version="5.3.1"; sha256="00sbki2cpdj87i8f43qkswl1hza8z59wnn8xvv2qxsscjyx0dghb"; depends=[Formula plotmo TeachingDemos]; }; - earthtide = derive2 { name="earthtide"; version="0.0.11"; sha256="0bbj9b7hhz2xkm86zihwn7p4vg8pm8gkfb4r6j4z20kl9lv1ya0p"; depends=[BH R6 Rcpp RcppArmadillo RcppParallel]; }; + earthtide = derive2 { name="earthtide"; version="0.0.12"; sha256="1blx8f9r741yf2q35pgww015b74r68r54q4cp1jhagqijv198y9n"; depends=[BH R6 Rcpp RcppArmadillo RcppParallel]; }; earthtones = derive2 { name="earthtones"; version="0.1.1"; sha256="17biiw0ig8i8ihc2f8csp0bqryygg27ic2v1vrf81ax3qzhngy4l"; depends=[ggmap]; }; easyAHP = derive2 { name="easyAHP"; version="0.1.1"; sha256="161mn90j9ph1p9277mj61hch8ndcv7k9izs32q93y5wp474gzynd"; depends=[]; }; easyCODA = derive2 { name="easyCODA"; version="0.34.3"; sha256="1s1zjjvswl3444m84n6c5sznva4y19kcm171xkcy1zdx3wqmd2m3"; depends=[ca ellipse vegan]; }; @@ -8683,8 +8470,8 @@ in with self; { eatATA = derive2 { name="eatATA"; version="1.0.0"; sha256="1n966jrcmifi1gbzcnyavsnzmcgsp138x32mcl8pj6w3by97i781"; depends=[lpSolve mathjaxr Matrix Rglpk]; }; eatDB = derive2 { name="eatDB"; version="0.5.0"; sha256="0lym1g411ykb2vzi5yr570lmyh30br667wkm5dvnvfs7bsmk05il"; depends=[DBI RSQLite]; }; eatGADS = derive2 { name="eatGADS"; version="0.19.1"; sha256="1pvflb6pkylsawc4wrk1hzlg79y5hwvdn4gr1dm0qi27vlckw00n"; depends=[data_table eatDB eatTools haven hms plyr stringi tibble]; }; - eatRep = derive2 { name="eatRep"; version="0.14.0"; sha256="11850yxmjhqivrn1z44jn4f1bvcmcwkmsnb665gmxx4w231smc5x"; depends=[BIFIEsurvey boot car combinat eatGADS eatTools EffectLiteR estimatr fmsb Hmisc janitor lavaan lme4 mice miceadds msm plyr progress reshape2 survey tidyr]; }; - eatTools = derive2 { name="eatTools"; version="0.7.1"; sha256="1ppkpgcq6bjyl1lyqfzm5d6wdh4wirny88h94sh1029wlrr5qksb"; depends=[data_table]; }; + eatRep = derive2 { name="eatRep"; version="0.14.3"; sha256="027a65s28w9vg3lmc0dbhqn0jhd0arcjb5yzc86nky8frnw39dzm"; depends=[BIFIEsurvey boot car combinat eatGADS eatTools EffectLiteR estimatr fmsb Hmisc janitor lavaan lme4 mice miceadds msm plyr progress reshape2 survey tidyr]; }; + eatTools = derive2 { name="eatTools"; version="0.7.2"; sha256="0xlcqm69finmr64a3fmw70bi3slixk5ar25hap8iv2d3abjcixgj"; depends=[data_table]; }; ebGenotyping = derive2 { name="ebGenotyping"; version="2.0.1"; sha256="1jllzc7kvvckrws8qhgvwy626llyb68sp1davp7swx48sf7rwcxc"; depends=[]; }; ebSNP = derive2 { name="ebSNP"; version="1.0"; sha256="0x3ijwg4yycsfy6jch1zvakzfvdgpiq8i7sqdp5assb8z1823w0b"; depends=[]; }; eba = derive2 { name="eba"; version="1.10-0"; sha256="03jr54xq109x9bf8kcs8mi7am17l9ya3xdkdppd8imwd2paqrssk"; depends=[nlme psychotools]; }; @@ -8699,9 +8486,9 @@ in with self; { ec50estimator = derive2 { name="ec50estimator"; version="0.1.0"; sha256="1zg4p1734q2jzifzfi2lf9wz3687s3cdn0yzkiwbc6w49mgdw877"; depends=[dplyr drc magrittr tibble tidyr]; }; ecb = derive2 { name="ecb"; version="0.4.0"; sha256="0hn1d1hxilwxxmxzzpdcj81d4vy8fbjk1z09kw7j0b2p04wrdlkc"; depends=[curl httr rsdmx xml2]; }; ecce = derive2 { name="ecce"; version="1.0.9"; sha256="071ahimmwc1bgcwli4c40h7drdg5ldhh0w1ldzxkjc78qyw8s23d"; depends=[purrr RCurl rjson stringr]; }; - ecd = derive2 { name="ecd"; version="0.9.1"; sha256="0d8mf5q6n7k5qj6kxvrb3habl0qmn2rxv814kydkrz2bg0scvm1q"; depends=[digest ggplot2 gridExtra gsl moments optimx polynom RcppFaddeeva Rmpfr RSQLite stabledist xtable xts yaml zoo]; }; + ecd = derive2 { name="ecd"; version="0.9.2.4"; sha256="0cdfdbkjjxs78bvvy5zrax0qgcc5fzhlxl3wqapfxigf5xlxlavh"; depends=[digest ggplot2 gridExtra gsl moments optimx polynom Rmpfr RSQLite stabledist xtable xts yaml zoo]; }; ecdfHT = derive2 { name="ecdfHT"; version="0.1.1"; sha256="1n3n9n86pj8c54l3xvp7knvi0ajbnjmz9pi79p7wfq92a90fqx48"; depends=[rgl]; }; - ecespa = derive2 { name="ecespa"; version="1.1-14"; sha256="07pldcwm1pi117rjl3y05x6kxl5lxs4y5aiwq0jd02mx43zy296c"; depends=[spatstat spatstat_core spatstat_geom spatstat_random]; }; + ecespa = derive2 { name="ecespa"; version="1.1-15"; sha256="1rr9b9bz8xqadj7mnix6dbs04dfbw8p9wyfilks9slkf1232nyav"; depends=[spatstat spatstat_core spatstat_geom spatstat_random]; }; ech = derive2 { name="ech"; version="0.1.2.0"; sha256="0xkgbqs6wmfp6a7dih4n850dw6ky596hlpmfrv72lnp77w03pll9"; depends=[assertthat curl dplyr fs geouy glue haven janitor labelled laeken purrr readxl rlang srvyr statar stringr survey tidyr]; }; echarts4r = derive2 { name="echarts4r"; version="0.4.3"; sha256="1hjjqbc6dvz6bi6lsqlvlkrmzqv1g205cd0f8k0a7lq37hcqsw7s"; depends=[broom corrplot countrycode dplyr htmltools htmlwidgets jsonlite purrr rstudioapi scales shiny]; }; echarty = derive2 { name="echarty"; version="1.4.5"; sha256="1c6m6di8g5zcv49wivkrr6qxqnikjf0xh06s8r35az00bl95ynqn"; depends=[data_tree dplyr htmltools htmlwidgets jsonlite shiny]; }; @@ -8714,14 +8501,13 @@ in with self; { ecm = derive2 { name="ecm"; version="6.3.0"; sha256="1g8y8wks7asjyybdh4nf19w5v8kvl56n69dl0sd0mlir98i4jmr3"; depends=[car earth lmtest sandwich urca]; }; ecmwfr = derive2 { name="ecmwfr"; version="1.3.0"; sha256="0xwbcgd590vk4civa4s039avvvxsazzh9y05lw591mpm79lz19mj"; depends=[curl getPass httr keyring memoise]; }; ecoCopula = derive2 { name="ecoCopula"; version="1.0.2"; sha256="1j3n9h7rm66r8vmzzhy5mjh36gs1qnsh7rq33ymjpkkfy698gbpm"; depends=[betareg doParallel foreach glasso glm2 igraph MASS mgcv mvabund ordinal plyr sna tweedie]; }; - ecochange = derive2 { name="ecochange"; version="2.5"; sha256="1lvwsi4g0b1whdcjpiri6ml90155cc5nfvxp9cnhmp9q3j9bjy1a"; depends=[curl data_table dplyr forcats gdalUtilities getPass ggplot2 httr landscapemetrics lattice R_utils raster rasterDT readr rgdal rgeos rlang rvest sf tibble viridis xml2]; }; + ecochange = derive2 { name="ecochange"; version="2.8"; sha256="0i04mds2fy0nrkyw8npn91i0i93naj1518cnidc3arjhp00w66zb"; depends=[getPass ggplot2 httr landscapemetrics lattice raster rasterDT rasterVis rgdal rlang sf tibble]; }; ecocomDP = derive2 { name="ecocomDP"; version="1.2.1"; sha256="06im6d0fx749ic6kjbxa6mk4cn98lz2q7939v627qrhwjkmmgx7a"; depends=[data_table dplyr EML emld geosphere ggplot2 httr lubridate magrittr neonUtilities RColorBrewer rlang rmarkdown stringr tidyr uuid xml2]; }; - ecodist = derive2 { name="ecodist"; version="2.0.7"; sha256="1dkf2m6glry5wzwfjiyw6sac89v6g0frbagr9cyfp2hcp0y5g4n2"; depends=[]; }; - ecolMod = derive2 { name="ecolMod"; version="1.2.6"; sha256="1n30faldfhpm2jkaw793vr220kgn3bmn8hxhw32rax294krmwn4v"; depends=[deSolve diagram rootSolve shape]; }; + ecodist = derive2 { name="ecodist"; version="2.0.9"; sha256="1m78bgbr7xjlc01q4n921y3aq2nkdbdkv9qpppfarw0d77pqpsdf"; depends=[]; }; + ecolMod = derive2 { name="ecolMod"; version="1.2.6.2"; sha256="00zdi0fg98v653a7sqzqdw8fsm10vxqihiy21f1fg0q0pjl0ycfd"; depends=[deSolve diagram rootSolve shape]; }; ecolTest = derive2 { name="ecolTest"; version="0.0.1"; sha256="0gkhf8gdjvkys54x0qx0h5i0lz0ksba6xdy15wzblzhym43vh9wf"; depends=[]; }; ecolottery = derive2 { name="ecolottery"; version="1.0.0"; sha256="0w5aq1aaqzz74vlj8hgnmn60l8rdrchx022dpspqnpvpzdlh65z5"; depends=[abc ggplot2]; }; - econet = derive2 { name="econet"; version="0.1.94"; sha256="1a3c8f76mr6027015s6lczxz4m20dl0bw1a23lv6i327nkk2lvmm"; depends=[bbmle doParallel dplyr foreach formula_tools igraph intergraph MASS Matrix minpack_lm plyr progressr sna spatstat_utils]; }; - econetwork = derive2 { name="econetwork"; version="0.6.0"; sha256="0h34c9gfdixckb3lcc699bb0cs49dsi7pg3524hrycbhdnfn51yf"; depends=[bipartite blockmodels igraph Matrix_utils Rcpp RcppEigen RcppGSL rdiversity]; }; + econet = derive2 { name="econet"; version="1.0.0"; sha256="1igcyhn0gzv82rm5ki59ivmr3q9ryrimyfwybnppcpvg38wdpvwj"; depends=[bbmle doParallel dplyr foreach formula_tools igraph intergraph MASS Matrix minpack_lm plyr progressr sna spatstat_utils]; }; economiccomplexity = derive2 { name="economiccomplexity"; version="1.1"; sha256="0ms5jr3d0hgch4di26wcaxrbl7q6iq2k53m2xwk0lxv6s1p373mp"; depends=[igraph Matrix Rdpack]; }; econullnetr = derive2 { name="econullnetr"; version="0.2.1"; sha256="0kdzkk8mlnc71a6n80hgrclwns66zyhr183ad4ifz8b146xh5cl9"; depends=[bipartite gtools reshape2]; }; ecopower = derive2 { name="ecopower"; version="0.1.0"; sha256="0x9rvwiypc3as44w67fn7dfsw1rrdhfpirz069hmzbw35gw0g1qh"; depends=[ecoCopula mvabund]; }; @@ -8729,25 +8515,22 @@ in with self; { ecorest = derive2 { name="ecorest"; version="1.0.0"; sha256="13x95z99yqld1fvfgzbm6ahrnvfvcqwlb23yjr187yg83iynh79v"; depends=[viridis]; }; ecosim = derive2 { name="ecosim"; version="1.3-3"; sha256="190xf0xy1cw40qx8x6y4m9avspxh0y11ffl3s18d5d2zr7rj3ag2"; depends=[deSolve stoichcalc]; }; ecospace = derive2 { name="ecospace"; version="1.4.2"; sha256="0vfaf27bv687ypxg5apzv63rl495rxyflqw33j17i4h0s7cjkgrm"; depends=[FD]; }; - ecospat = derive2 { name="ecospat"; version="3.2.1"; sha256="14m27biw3zp4ly3jf4q562mxcilnkdgf2wf6hv4fbhw5fh2rhbcp"; depends=[ade4 adehabitatHR adehabitatMA ape biomod2 classInt dismo doParallel ecodist foreach gbm gtools Hmisc iterators ks maps maptools matrixStats nabor poibin PresenceAbsence randomForest raster rms snowfall sp vegan]; }; + ecospat = derive2 { name="ecospat"; version="3.2.2"; sha256="0vd2aic7js0pj20jjmvjczng83qkdj0gxvnn3mxj824vgdvnkmy5"; depends=[ade4 adehabitatHR adehabitatMA ape biomod2 classInt dismo doParallel ecodist foreach gbm gtools Hmisc iterators ks maps maptools matrixStats nabor poibin PresenceAbsence randomForest raster rms snowfall sp vegan]; }; ecostats = derive2 { name="ecostats"; version="0.1.4"; sha256="0xkhkcc6psgvvwhys9azhxisnqw0azd7brp0rg60d725jqvwhbyp"; depends=[GET mgcv mvtnorm]; }; ecostatscale = derive2 { name="ecostatscale"; version="1.0"; sha256="14i5wg5qxqn3qzycgqda6blb0imkckq23gl3c3whfa72a3a8y30q"; depends=[deSolve mvtnorm]; }; ecotox = derive2 { name="ecotox"; version="1.4.4"; sha256="01sc2lf2kca7wqqyd3gk48va39gb7ijzgs2smgb2k4xbzjqndg08"; depends=[tibble]; }; ecotoxicology = derive2 { name="ecotoxicology"; version="1.0.1"; sha256="084xkr59d7x9zxmsnsyym2x8jshz6ag6rvnmhd1i6fzar8ypwccb"; depends=[]; }; - ecotraj = derive2 { name="ecotraj"; version="0.0.1"; sha256="0570j338107bxx004wwx76j1x981nh1apgp9x33r4ddz4f589aag"; depends=[circular Kendall MASS Rcpp]; }; + ecotraj = derive2 { name="ecotraj"; version="0.0.3"; sha256="0mfvyh25xjhfd8k8b84d3vi9nf69g2lg82x6j3nsyhxy1kax9py8"; depends=[Kendall MASS Rcpp]; }; ecoval = derive2 { name="ecoval"; version="1.2.9"; sha256="05a6hyjsbdp4wwhrm5fwjr7fxx4g2nffhp885q0da2jkzd0754f1"; depends=[fs jpeg rivernet utility]; }; ecp = derive2 { name="ecp"; version="3.1.3"; sha256="0n602jssl6rf596nwm6hbl7s9vdlqi20w8mrhxicj373mw5v22m8"; depends=[Rcpp]; }; - ecpc = derive2 { name="ecpc"; version="3.0"; sha256="0v2ib2jknzl1qzh852kzpyy9v0synbhhfhm3p4s8d63p05bnzcqs"; depends=[CVXR gglasso glmnet JOPS Matrix mgcv multiridge mvtnorm pracma pROC quadprog survival]; }; + ecpc = derive2 { name="ecpc"; version="3.1"; sha256="0dhr71q4hwwfpzjm7vgl4ppa6441iqz1lbk9j3dvag255nv1bnpr"; depends=[checkmate CVXR gglasso glmnet JOPS Matrix mgcv multiridge mvtnorm pracma pROC quadprog survival]; }; ecr = derive2 { name="ecr"; version="2.1.0"; sha256="0vvkdxlcqaim9mkgwgdxrx1xhw3lshi1nxfw3kqllq14p3l6xss4"; depends=[BBmisc checkmate ggplot2 parallelMap ParamHelpers reshape2 smoof]; }; ectotemp = derive2 { name="ectotemp"; version="0.2.0"; sha256="172rij0mmk7dd10lpbsxm4yy7072nz1fh7jfiyqmagzs5hwa31jv"; depends=[dplyr psych]; }; ed50 = derive2 { name="ed50"; version="0.1.1"; sha256="058p1750ba5hp4rczi26grgwjia2ny1880v1vfp6wxad13r459pq"; depends=[boot]; }; ed50simulation = derive2 { name="ed50simulation"; version="0.1.1"; sha256="00fknpssrpin8bpjhf2lsjx3lbpinrmqa6jzmgy3nslkc51x0939"; depends=[boot]; }; eda4treeR = derive2 { name="eda4treeR"; version="0.3.0"; sha256="1shhajd9m9cxj9hdz34bnbs6sx20si37wh6ljw0wx5yrc9m7z9ib"; depends=[dae dplyr emmeans ggplot2 lme4 magrittr pbkrtest tidyverse]; }; edbuildmapr = derive2 { name="edbuildmapr"; version="0.3.1"; sha256="0hc5vfpilqxva88dzgp57j9cgsq64r75vhm3hhl8lhi2wwapwk1d"; depends=[dplyr magrittr sf spdep stringr tibble tidyselect tmap]; }; - edcc = derive2 { name="edcc"; version="1.0-0"; sha256="036fi6mnn9480hkb378xb5jilkfvdydjmkyw4mcc9s1lz195f62w"; depends=[spc]; }; - edci = derive2 { name="edci"; version="1.1-3"; sha256="1f1ry2adfranfrrvf1gkiy58pra3z6bray4v5fgr0z9n1ybcaff0"; depends=[]; }; edcpR = derive2 { name="edcpR"; version="1.0.1"; sha256="02d33cd9pkcjrbl9qipcjzkhrc68j7bybg1hpnsngiz4wmf3bfik"; depends=[]; }; - eddi = derive2 { name="eddi"; version="0.0.1"; sha256="19cgrqdcji509igb6rmlwb75xyyvrh34nv6zyjjfcsc31p5nvf95"; depends=[raster rgdal]; }; eddington = derive2 { name="eddington"; version="2.1.1"; sha256="0v88v2xmvirnj661jsg2qh7n8afaw71mqks9csnmmz3c16agp7b6"; depends=[Rcpp]; }; edeaR = derive2 { name="edeaR"; version="0.8.6"; sha256="13hzb7m2rb6crxsia3d5szyz59kyd3506j8avbr51a7cps1bqaj0"; depends=[bupaR data_table dplyr forcats ggplot2 ggthemes glue hms lubridate miniUI purrr rlang shiny shinyTime stringr tibble tidyr zoo]; }; edecob = derive2 { name="edecob"; version="1.0.0"; sha256="1zkrh33wzivfaxqn35x3ciwmm9g98x4wgkzmaflzb12p6c0d4f8w"; depends=[ggplot2 rlang]; }; @@ -8768,7 +8551,6 @@ in with self; { edlibR = derive2 { name="edlibR"; version="1.0.0"; sha256="008wyzmrnzga470p88hg6zxqj6jn5y27vadxk03nx9qx0ap6f97r"; depends=[Rcpp stringr]; }; edmcr = derive2 { name="edmcr"; version="0.2.0"; sha256="06ms8zyygkgq3divall8paiiw5blqxfgml8iy339zfyiwfxabw5a"; depends=[igraph lbfgs MASS Matrix nloptr sdpt3r truncnorm vegan]; }; edmdata = derive2 { name="edmdata"; version="1.2.0"; sha256="042imrnn242jzb9wb4ghjganqmx61zjwspqy9qpkxqi9nr7zxr75"; depends=[]; }; - edrGraphicalTools = derive2 { name="edrGraphicalTools"; version="2.2"; sha256="105jv2sz10xbl881lkhgmxzgmb8629mqsminhd197khrkf9nv40i"; depends=[lasso2 MASS mvtnorm rgl]; }; edstan = derive2 { name="edstan"; version="1.0.6"; sha256="1gm1rxwywigyfdlcm2yj1m9qjb4s6w7chr1ck7b32x1pdxdl3ns5"; depends=[ggplot2 rstan]; }; educationdata = derive2 { name="educationdata"; version="0.1.1"; sha256="1mliw2lc4517g7yqnd7lkys0wwx2va5f4mlwnqadpn7rg6hgm04x"; depends=[glue httr jsonlite readr]; }; educineq = derive2 { name="educineq"; version="0.1.0"; sha256="0qd6kvcy280glv3q6lcrawmnsfvp90as95chgi3hav0yj2dpakn6"; depends=[flexsurv ineq]; }; @@ -8798,12 +8580,12 @@ in with self; { ega = derive2 { name="ega"; version="2.0.0"; sha256="04kwh24aap22yclmcrix3vi553qb30hd43mgfzpdl0cw3ibrh7xg"; depends=[ggplot2 mgcv]; }; egg = derive2 { name="egg"; version="0.4.5"; sha256="1fy7srpiavfn8kyrr1m84an7acgwi6ydzrg71m3b0vk7y9ybmj0m"; depends=[ggplot2 gridExtra gtable]; }; eggCounts = derive2 { name="eggCounts"; version="2.3-2"; sha256="1hb7a78db97xz5hm311d60n2kg1wdlrf57vg4ixamqihyrcs5r4v"; depends=[BH boot coda lattice numbers Rcpp RcppEigen RcppParallel rootSolve rstan rstantools StanHeaders]; }; - egor = derive2 { name="egor"; version="1.22.1"; sha256="15nl5lz5n3qil84fsfq966q6rks7wgx1dc2bfcgiaavff4n22acz"; depends=[dplyr purrr rlang srvyr tibble tidygraph tidyr]; }; - eha = derive2 { name="eha"; version="2.9.0"; sha256="069nxf7mfx2b2r1961jf0mcgxbc132ljykr17p3k8pax39m2p78n"; depends=[survival]; }; + egor = derive2 { name="egor"; version="1.22.5"; sha256="03bsqldkvwfxwk5hy74ilhkkyhpd6sx7x39ayl0ap354gmyfmzgg"; depends=[dplyr purrr rlang srvyr tibble tidygraph tidyr]; }; + eha = derive2 { name="eha"; version="2.10.0"; sha256="03lxrdwf6kkjl6qh21xfj13956wd0b85hcj6grprnjh3hwv73m14"; depends=[survival]; }; ehaGoF = derive2 { name="ehaGoF"; version="0.1.1"; sha256="15hpzj3ridl6w3pd5z86d88cc88jw09qpqhsdwkar4dby8lgxhi0"; depends=[]; }; ehelp = derive2 { name="ehelp"; version="1.2"; sha256="0264nx4bidrbwhlxx9llarvh4zb3xnzln8km14823q1hclkpm2fq"; depends=[]; }; ei = derive2 { name="ei"; version="1.3-3"; sha256="0i8pvpal23zwsqldhmm3iis4vw9s08mlydpshaig2dsd9549gn11"; depends=[cubature eiPack ellipse foreach MASS mnormt msm mvtnorm plotrix sp tmvtnorm ucminf]; }; - ei_Datasets = derive2 { name="ei.Datasets"; version="0.0.1-1"; sha256="1c78rbqgbvsg6zqc6bw0dvjwp9llkmpp9id0q1h7i3dn81yl7xy9"; depends=[tibble]; }; + ei_Datasets = derive2 { name="ei.Datasets"; version="0.0.1-3"; sha256="1ii9dnjxbjvzp0ihg499fvwqzgdwdcp2xxnqfqz319d805hajcpr"; depends=[tibble]; }; eiCompare = derive2 { name="eiCompare"; version="3.0.0"; sha256="0cpllc4aq52mga2cc8ms1q4qf633r13i5j6267vnvqyb6zq0r47y"; depends=[bayestestR censusxy coda data_table doParallel dplyr ei eiPack foreach ggplot2 leaflet magrittr mcmcse overlapping purrr rlang sf stringr tidyr tidyselect wru]; }; eiPack = derive2 { name="eiPack"; version="0.2-1"; sha256="0xcgl9pr6d960zhp8fd944ba5p5ybp520lp2a4jgsj1lcvqf8xbn"; depends=[coda MASS msm]; }; eia = derive2 { name="eia"; version="0.3.7"; sha256="1af9m5qrchxcrhyasx0hkrzjr6z4vixxmq4q9q33bkscy263q9fg"; depends=[dplyr httr jsonlite lubridate magrittr memoise purrr readxl tibble]; }; @@ -8812,7 +8594,7 @@ in with self; { eigenmodel = derive2 { name="eigenmodel"; version="1.11"; sha256="1l3n0z736xf3x6cyxzmmq1jb2glxi2b75z7v39y4471knh6nbb4d"; depends=[]; }; eigenprcomp = derive2 { name="eigenprcomp"; version="1.0"; sha256="156qyv7sl8nng55n3ay6dnpayyfrqv27ndz40xf4w92is9zmymy0"; depends=[]; }; eikosograms = derive2 { name="eikosograms"; version="0.1.1"; sha256="13s5wqcc8iwnhn3msrh9dfrvq9bwlby93p9v5wcnrm8m9iskax1s"; depends=[plyr]; }; - eimpute = derive2 { name="eimpute"; version="0.1.1"; sha256="1ipm6v4irk4d4qxld09h8r0kknjmbikvn27y68wq7r02qhcvj4nv"; depends=[Rcpp RcppEigen]; }; + eimpute = derive2 { name="eimpute"; version="0.2.1"; sha256="0m2rvpy7v0y67cc8x71qwi1sbfaakhn0vmxlfm4l60132fibb8v2"; depends=[Rcpp RcppEigen]; }; einet = derive2 { name="einet"; version="0.1.0"; sha256="02v4k6031q2bcjkhbypzkgdj1lyvqbsi1nb0y40zb26bk2381ycq"; depends=[assertthat entropy igraph magrittr shiny]; }; einsum = derive2 { name="einsum"; version="0.1.0"; sha256="01930c38hkbqhn8d5g7jfhr0mrdi077rg0kkbp5kagxcqx6jrg7w"; depends=[glue mathjaxr Rcpp]; }; eiopaR = derive2 { name="eiopaR"; version="0.1.1"; sha256="1f8fm6ia5invskc7a7hcjvf52afdkw38y1vx7jlpqxvawswmwpv2"; depends=[curl httr jsonlite]; }; @@ -8821,13 +8603,13 @@ in with self; { eivtools = derive2 { name="eivtools"; version="0.1-8"; sha256="0ynmrql6dv10m7cwba5mzwlbvp6ab53nzqqvk3ihwyiqzmnnmpk4"; depends=[R2jags]; }; eks = derive2 { name="eks"; version="1.0.1"; sha256="0vl5q4n3jk4zx8wgq5cx6x3yrr8ivbm0ha2z0rsicf7c6ky9pmvj"; depends=[dplyr ggplot2 isoband ks mapsf sf]; }; elaborator = derive2 { name="elaborator"; version="1.1"; sha256="1kq3qqqywpzrk1ichsljvfijhsybmj7s0scmswmwi2crqi67gzp8"; depends=[bsplus dendextend dplyr forcats haven purrr RColorBrewer reshape2 rlang seriation shape shiny shinydashboard shinyWidgets tidyr]; }; - elasdics = derive2 { name="elasdics"; version="0.1.5"; sha256="1q6l32v3y5l1n9g4si6swc3ck1nndn4xsj0hw1q9b4x5dlxvfziv"; depends=[numDeriv]; }; + elasdics = derive2 { name="elasdics"; version="0.2.0"; sha256="059mcnf8ym8xjibs0lkr7drvwls3qcfivlls10yl7ss4ial324qp"; depends=[numDeriv]; }; elasso = derive2 { name="elasso"; version="1.1"; sha256="0nz3vw803dvk4s45zc9swyrkjwna94z84dn4vfj3j17h74a0cij2"; depends=[glmnet SiZer]; }; elastic = derive2 { name="elastic"; version="1.2.0"; sha256="0k98ziacyxl1pyhyynmswcncqwl0a05sawypncdpdd9xr77nvgi6"; depends=[crul curl jsonlite R6]; }; elasticIsing = derive2 { name="elasticIsing"; version="0.2"; sha256="1zjgvz7w5j06x2cd1fzjl85di95ah67m1lanw01kic2bvhfwfbn6"; depends=[cvTools glmnet magrittr qgraph reshape2]; }; elasticnet = derive2 { name="elasticnet"; version="1.3"; sha256="0nxcw06d0cp2mbqzg2fm9yys5xm6xx7bfcfvr0avcs8afkvz29j8"; depends=[lars]; }; - elbird = derive2 { name="elbird"; version="0.1.3"; sha256="1gf5kf9kq5g70y6is8xsgp8ch63rx58fsdmp3bhs10mgq6fggalp"; depends=[cpp11 dplyr matchr purrr R6 tibble vroom]; }; - elec = derive2 { name="elec"; version="0.1.2.1"; sha256="1gk75y83n6hvv36fp1n6kncln35j6f3ahasnzhc4fp71aq6q6vjf"; depends=[]; }; + elbird = derive2 { name="elbird"; version="0.2.3"; sha256="0wbqc71cpmhzdma02i2sr2j119wfp9fhbs4271mngk3ldqvsfib3"; depends=[cpp11 dplyr matchr purrr R6 tibble vroom]; }; + elec = derive2 { name="elec"; version="0.1.2.2"; sha256="1qc2hzbkmxvk4zrmdr935klhxvvdc7rmximqybb5aammd351qh2a"; depends=[]; }; elec_strat = derive2 { name="elec.strat"; version="0.1.1"; sha256="09196k5c3jsikh98d33bn70izwcbx0wb5ki9fv1ij0dw9mnv4c3p"; depends=[elec]; }; elect = derive2 { name="elect"; version="1.2"; sha256="1hjqhmdklspssa75x8xdhv2narqgw80qh259hyfwfgnvva97w2ja"; depends=[msm nnet]; }; elections = derive2 { name="elections"; version="1.0"; sha256="0ig3pd1dw978g2sg4ynzd3p15nk6hx17pxvbxfi5rm131mjdmjdm"; depends=[]; }; @@ -8842,7 +8624,7 @@ in with self; { elhmc = derive2 { name="elhmc"; version="1.1.0"; sha256="0ngva7rnfj75fq93ycsv929m9ykijp48r7cvd6sfmi0sqsjinax5"; depends=[emplik MASS plyr]; }; elisr = derive2 { name="elisr"; version="0.1.1"; sha256="1kz07fyffaqgda9rqidxzxz0bxzhyb8pyxpzqsvjsn1i9w98cb5k"; depends=[]; }; elitism = derive2 { name="elitism"; version="1.0.4"; sha256="0n5g1nd1dd5wc76qa2va1lyxahg9p062l8wdqzq43ah6943pjzgr"; depends=[MASS]; }; - elliplot = derive2 { name="elliplot"; version="1.2.0"; sha256="186i4gr8k9bifzssblln8z6wxfmnplls3kc4m2liiz86mzsnim9r"; depends=[]; }; + elliplot = derive2 { name="elliplot"; version="1.3.0"; sha256="13r16lx8hx46d3r9awki4j6lvy5p2q5d3k268h3bhd0mcsbxrml0"; depends=[]; }; ellipse = derive2 { name="ellipse"; version="0.4.2"; sha256="1wm5v7zdv2drgdba7z96jwsx74mqhlq80qgrvdb4vb5r02dcw68p"; depends=[]; }; ellipsis = derive2 { name="ellipsis"; version="0.3.2"; sha256="0n0mm9jngklv7j9wa64jdji035z0smmnsp2dfwcz9isrxgjnc0m9"; depends=[rlang]; }; elliptic = derive2 { name="elliptic"; version="1.4-0"; sha256="1dhba0yfxjd5rlqsxp5a7s2hclfkla9wigsr39dlma67l6qjjmxn"; depends=[MASS]; }; @@ -8853,9 +8635,9 @@ in with self; { elsa = derive2 { name="elsa"; version="1.1-28"; sha256="01sj2a4yhv5m6qj6ih26zw4yzd8s27lll7yp0yysjjrwz79a0fbq"; depends=[raster sp]; }; eltr = derive2 { name="eltr"; version="0.1.0"; sha256="0f4sy2hhsbghasl5xcnqlgxqhb503pl73c5vdkgpcm73smrqbpbv"; depends=[data_table]; }; emIRT = derive2 { name="emIRT"; version="0.0.13"; sha256="1z6yd9m6vggbp42qms2sg0rbxjpg15x9m8gkdz1p3q4aqrc2ncj0"; depends=[pscl Rcpp RcppArmadillo]; }; - emayili = derive2 { name="emayili"; version="0.7.9"; sha256="15a4paw77cn6fx92kxy1k33ahzb338yrppvxpi5idd6bbcwqccja"; depends=[base64enc commonmark curl digest dplyr glue htmltools httr logger magrittr mime purrr rmarkdown rvest stringi stringr tidyr urltools xfun xml2]; }; + emayili = derive2 { name="emayili"; version="0.7.10"; sha256="0ijbjh7ms86a8scnd3rix2y180q729c90s889yj7ljsiskh4az44"; depends=[base64enc commonmark curl digest dplyr glue htmltools httr logger magrittr mime purrr rmarkdown rvest stringi stringr tidyr urltools xfun xml2]; }; emba = derive2 { name="emba"; version="0.1.8"; sha256="1bzp1cplr977w87bm0pvabvgai91a3j51pfjn4lc1ncjbr2v6wl0"; depends=[Ckmeans_1d_dp dplyr igraph purrr readr rje stringr tibble tidyr tidyselect usefun visNetwork]; }; - embed = derive2 { name="embed"; version="0.1.5"; sha256="029ysbfvgb1sb14xs0p6dswcxbpgnhvshhs2hcqbrizysb7c7bj2"; depends=[dplyr generics keras lifecycle purrr recipes rlang rsample tensorflow tibble tidyr uwot withr]; }; + embed = derive2 { name="embed"; version="0.2.0"; sha256="0rjjzb5bmg2y9bmjhh91xfiyg5karq16ip4r3d1m71cagixpv6ac"; depends=[dplyr generics glue keras lifecycle purrr recipes rlang rsample tensorflow tibble tidyr uwot withr]; }; embryogrowth = derive2 { name="embryogrowth"; version="8.4"; sha256="0miaw479fv1vrypj9hhr72l45wmd5dh00rm3ay61a8w3viph76kq"; depends=[deSolve HelpersMG numDeriv optimx]; }; emdbook = derive2 { name="emdbook"; version="1.3.12"; sha256="0ls3zxxlwmdv7zn1v9i1y9zc2sn0hbgmyjvsj7zn3ajsw7wwlih6"; depends=[bbmle coda lattice MASS plyr]; }; emdi = derive2 { name="emdi"; version="2.1.1"; sha256="1imw4zlx338yfp4kb6ax4z1ni5f6q5mlcvfx7xm05j0nqigjphv9"; depends=[boot formula_tools ggplot2 gridExtra HLMdiag MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 saeRobust spdep stringr]; }; @@ -8863,7 +8645,6 @@ in with self; { emg = derive2 { name="emg"; version="1.0.9"; sha256="04sm05xnjns7wcvpk35ywkxy6g0mm84r060mkmzh64wq58c2q06l"; depends=[moments]; }; emhawkes = derive2 { name="emhawkes"; version="0.9.5"; sha256="0b6kjwx2lsz5rj8819n71nvvchjpys90ns5n6gcgfwn5afzfdvql"; depends=[maxLik]; }; emld = derive2 { name="emld"; version="0.5.1"; sha256="0cvnfvzskvpcqzs6fwrpjcqrc6yrfciliy9jj0c9h4iyag0g0b9b"; depends=[jsonld jsonlite xml2 yaml]; }; - emme2 = derive2 { name="emme2"; version="0.9"; sha256="035s4h95ychqb14wib0dqbg4sjy9q01fsryr0ri25g1hsi5f8lpm"; depends=[reshape]; }; emmeans = derive2 { name="emmeans"; version="1.7.3"; sha256="0kbbin3zfxqkm5awq4331fv7y2kfpdhkwrqh91prl7qpf8kscin6"; depends=[estimability mvtnorm numDeriv xtable]; }; emoa = derive2 { name="emoa"; version="0.5-0.1"; sha256="0rkr4d4fyqxmsrlbzar27z97qkw4cl1dkvfnhbdwpgg9fi1cixmz"; depends=[]; }; emoji = derive2 { name="emoji"; version="0.2.0"; sha256="06bsz0hsaqa2lzqpyqhsfp07p8ri5frvhiza0s8aali7w3cr2szh"; depends=[glue stringr tibble]; }; @@ -8886,9 +8667,9 @@ in with self; { endoSwitch = derive2 { name="endoSwitch"; version="1.0.0"; sha256="1cj4skk317ppnayk1ph63vll49vs74fljc25cn1iviwgjq64ly0k"; depends=[data_table maxLik msm]; }; endogeneity = derive2 { name="endogeneity"; version="2.0.1"; sha256="1a71w8pqi54g4m814r7z7ywd4fkhlnvrxbrb7s5zlfb5r829b69h"; depends=[MASS maxLik pbivnorm statmod]; }; endogenous = derive2 { name="endogenous"; version="1.0"; sha256="079fmfxl9gf080zq5m1ixmgry9dawg2y6ixbfyc5da5jxf3zk9h8"; depends=[mvtnorm]; }; - endorse = derive2 { name="endorse"; version="1.6.1"; sha256="067wrb5vhi9qn66rwp38cb4kss2yc55blh5dnl99fsvpc0qs146p"; depends=[coda]; }; + endorse = derive2 { name="endorse"; version="1.6.2"; sha256="16cbqg3z71c36j2zzw3xr09p6kpjwim7610sss1ayjh3xs0isa2l"; depends=[coda]; }; endtoend = derive2 { name="endtoend"; version="2.29"; sha256="0dqzh2blb2h8ngchvfvnzx0gmilvx9ydvzqwfy4d9f58ixybn4d9"; depends=[ggplot2 pastecs]; }; - energy = derive2 { name="energy"; version="1.7-9"; sha256="1ndssfi0hbnsm5jwrns7m63ppxm221hd6gk0b0wa1a7mk7ny1l38"; depends=[boot gsl Rcpp]; }; + energy = derive2 { name="energy"; version="1.7-10"; sha256="19xyw5bkyzfk22gly2ca2nsznqnrhaq4a77727kr1k26bj3y8gal"; depends=[boot gsl Rcpp]; }; energyr = derive2 { name="energyr"; version="0.1.2"; sha256="0gjw2cvpvhyywxlx3vfkhlh7zjwig46z1zwdc01zxwflvdx3z40n"; depends=[RgoogleMaps]; }; enerscape = derive2 { name="enerscape"; version="0.1.3"; sha256="0m4dalrm11pyxxbcfsq9mcblm35v77vxyryal4p9mnv7pc4fc352"; depends=[gdistance Matrix raster rgdal rgeos sp]; }; enetLTS = derive2 { name="enetLTS"; version="0.1.0"; sha256="0lqnhrsg9fnkn8z5crdrajpgavk1knr9z4sbdffpa6q9n8s5pmhr"; depends=[cvTools ggplot2 glmnet reshape robustHD]; }; @@ -8910,10 +8691,10 @@ in with self; { entrymodels = derive2 { name="entrymodels"; version="0.2.1"; sha256="0fz7jzax12pzw47iry4amgg9z4z3z94kig6r5dhcqa84kq02294v"; depends=[dplyr magrittr readr]; }; envDocument = derive2 { name="envDocument"; version="2.4.1"; sha256="074m7adnasvys28kjdgj9071fi90vsl4yv5zvpxik4crlx098dlw"; depends=[]; }; envalysis = derive2 { name="envalysis"; version="0.5.1"; sha256="1lvzb8jdbvrigw5va39fsfnkvwrgb9wvarrdllipszqxmnc8g5rk"; depends=[drc ggplot2 lmtest]; }; + enveomics_R = derive2 { name="enveomics.R"; version="1.9.0"; sha256="16c6w3nhv53yp72w8hss3s1lhhlbaiylcvkc93a83zzcpx37i23b"; depends=[fitdistrplus investr sn]; }; envi = derive2 { name="envi"; version="0.1.13"; sha256="0gs6dda7d53vbhjxij27r1nmgq2bc6p9xddryc7sajcajskmz5nb"; depends=[concaveman cvAUC doFuture doRNG fields foreach future iterators pls raster rgeos ROCR sp sparr spatstat_geom]; }; enviGCMS = derive2 { name="enviGCMS"; version="0.6.6"; sha256="01y3qqh99aclarglpdg8mb9iikzkm1w62mv93m22lm8ami25a372"; depends=[animation BiocParallel data_table mixtools RColorBrewer Rdisop]; }; enviPat = derive2 { name="enviPat"; version="2.4"; sha256="1gvb7jmwwh4l44b50xmrq3bysr2iv6442yh9pdk6n81g3bgpz1d0"; depends=[]; }; - enviPick = derive2 { name="enviPick"; version="1.5"; sha256="04q6zwqq2ip8b8h2n1jpgx1bzcvi7lazljs0806wiakbc79x232p"; depends=[readMzXmlData shiny]; }; envir = derive2 { name="envir"; version="0.2.1"; sha256="1w4yrs1k3makjwvaqr7611944lw0rl61y34xv5pqvgv4ymfnga93"; depends=[]; }; envirem = derive2 { name="envirem"; version="2.3"; sha256="0gffdj7jz61dlkznlk5a4w8fh72phfj3s9gnssb1z73jx82j34cw"; depends=[knitr palinsol raster RSAGA sf]; }; envlpaster = derive2 { name="envlpaster"; version="0.1-2"; sha256="11a5n40k1ln5gxxvwq1vh4dhmhifhlm89hkhf36qnhj4bjh3v3y0"; depends=[aster aster2 caTools MASS]; }; @@ -8922,7 +8703,6 @@ in with self; { envstat = derive2 { name="envstat"; version="0.0.2"; sha256="1lyv8dh3h4g4zcndv9b5m7zp0g22hznzshy4z55i058w82079c7d"; depends=[cli httr2 rstudioapi yaml]; }; eoR = derive2 { name="eoR"; version="0.4.0"; sha256="0vn4s4af94n9h6x7z14qwpz94rgsd5m3mv55wva7x3h99ryhm83s"; depends=[data_table]; }; eoffice = derive2 { name="eoffice"; version="0.2.1"; sha256="03g8r3xnsnnlyj7y07jm3qjhlv3pkf8v2lxpqzd24ncncxmbcxmi"; depends=[broom devEMF dplyr flextable ggplot2 ggplotify htmlwidgets magick magrittr officer plotly R_devices rvg]; }; - epade = derive2 { name="epade"; version="0.3.8"; sha256="1alvsifc6i71ilm1xxs1d7sqlapb48bqd6z2n4wi6pqcjvwp7bif"; depends=[plotrix]; }; epandist = derive2 { name="epandist"; version="1.1.1"; sha256="0hxgbjns5bk82rgcmykxifnnxcnqdzmkimkkmpdif64zr5g3gjdg"; depends=[]; }; epanet2toolkit = derive2 { name="epanet2toolkit"; version="0.5.1"; sha256="0ksb1cmjykmp0diic7xz5240d9n0sl6byp8rac3jpk3hb1p46r4d"; depends=[]; }; epanetReader = derive2 { name="epanetReader"; version="0.7.3"; sha256="05pwa6z03qsjwr9pxpbxycsd21p7mf5j5ajyg4yaas5g100s1k8c"; depends=[]; }; @@ -8954,7 +8734,7 @@ in with self; { eplusr = derive2 { name="eplusr"; version="0.15.1"; sha256="09s0fibf390jixdvn3kdsxdvm3xy1cfk4v0hakvidq9v56hshkhy"; depends=[callr checkmate cli crayon data_table hms lubridate processx progress R6 RSQLite stringi units]; }; eply = derive2 { name="eply"; version="0.1.2"; sha256="0al44pvqf6ls3dh129vlv3g56hk1nbql09rj0qsb04d9kaz9anrp"; depends=[magrittr]; }; epoc = derive2 { name="epoc"; version="0.2.6-1.1"; sha256="1qlj4cl7mh5k52v2ippfs3cish5iadnix5w46p25hjqiriksclna"; depends=[elasticnet irr lassoshooting Matrix survival]; }; - epocakir = derive2 { name="epocakir"; version="0.9.7"; sha256="1i3hiyk8337cpfir25j9afjq6kjy4p2s407nv66kzxp9945fjc8i"; depends=[dplyr ellipsis lubridate magrittr rlang tibble tidyr tidyselect units vctrs]; }; + epocakir = derive2 { name="epocakir"; version="0.9.8"; sha256="0zid17100gj50dfb6l305jvsnzaixlr5w482f061gl50bxaplgg2"; depends=[dplyr ellipsis lubridate magrittr rlang tibble tidyr units]; }; eponge = derive2 { name="eponge"; version="0.1.0"; sha256="19wd80l35acij793spxglcwz346i2iivk6n0q2304wjcca6qzds7"; depends=[rlang]; }; epos = derive2 { name="epos"; version="1.0"; sha256="0z3r0128ql1jd8nkadia9w97g4nr3w4azvhpj7bjcaf3smh733d8"; depends=[cowplot ggplot2 gridExtra hash mongolite stringr testthat TopKLists VennDiagram xtable]; }; epr = derive2 { name="epr"; version="3.0"; sha256="0czfz6qkcpa2qqs3pqii27hgpdvdzfrvxl0ip67v58hamq7kvjfv"; depends=[car lme4]; }; @@ -8978,9 +8758,9 @@ in with self; { erah = derive2 { name="erah"; version="1.1.2"; sha256="0dyjb2ja5199z8is11in11a95l2dbhaa2qj42pikh0ydk47qhd6v"; depends=[igraph ncdf4 nnls quantreg Rcpp signal XML]; }; erboost = derive2 { name="erboost"; version="1.3"; sha256="09hlpn6mqsmxfrrf7j3iy8ibb2lc4aw7rxy21g3pgqdmd9sbprim"; depends=[lattice]; }; ercv = derive2 { name="ercv"; version="1.0.1"; sha256="0rs4yhm9sjnqkrgqqy6b8wj9fgk910hxc8d7zi4qwql0v1gid27l"; depends=[]; }; - erer = derive2 { name="erer"; version="3.0"; sha256="143ygibzjsxlmf3p5ldcc4dpr3mcm873g4rwgb55q912bdhsn725"; depends=[lmtest systemfit tseries urca]; }; + erer = derive2 { name="erer"; version="3.1"; sha256="03pdq3p5c5f20959hgk5q2cx5x10bpgf0qg4z1nvsf31vc5ni77v"; depends=[lmtest systemfit tseries urca]; }; ergMargins = derive2 { name="ergMargins"; version="0.1.3"; sha256="0liq64qjd3b0v5pcsvfmvmv7dr0ak4ld2mbin8w2wcdnvpfajjy5"; depends=[btergm ergm Matrix network numDeriv sna statnet_common]; }; - ergm = derive2 { name="ergm"; version="4.1.2"; sha256="184vsjscza8d3h0yp3zyjl75k8p7g93wwxn360ji793n6gsnxg0s"; depends=[coda lpSolveAPI MASS Matrix memoise network purrr rlang rle robustbase statnet_common tibble trust]; }; + ergm = derive2 { name="ergm"; version="4.2.1"; sha256="1xdhrb3l7w6p45b92bxg9apzpm86h74cihgmmplsj9yid7mnjis8"; depends=[coda digest knitr lpSolveAPI magrittr MASS Matrix memoise network purrr rlang rle robustbase statnet_common stringr tibble trust]; }; ergm_count = derive2 { name="ergm.count"; version="4.0.2"; sha256="1lav2nndkmiv8a3ns1cqdl7hflz97hcd8pwakv3ywwmlwk5x6vii"; depends=[ergm network statnet_common]; }; ergm_ego = derive2 { name="ergm.ego"; version="1.0.0"; sha256="11jp90j8fs2ix5v73syal5cy44fs0d6fs1mgnirpn9a66fhyblvf"; depends=[coda dplyr egor ergm network purrr RColorBrewer statnet_common survey tibble]; }; ergm_rank = derive2 { name="ergm.rank"; version="4.0.0"; sha256="00nafn7bin7r4wixl2qgbybghx7bs7bc2jhj1ldk6rb9pmns739h"; depends=[ergm network statnet_common]; }; @@ -8995,7 +8775,6 @@ in with self; { erratum = derive2 { name="erratum"; version="2.2.0"; sha256="0id03wm8knll548ydwv3cpn282xvw05vyaih8jy6nlmlis18wybf"; depends=[R6 rlang]; }; errint = derive2 { name="errint"; version="1.0"; sha256="1ya7fsvwhmgxw87r32m4345n8pw2pbpv026xvml03s1kiam8qwbw"; depends=[rootSolve VGAM]; }; errorist = derive2 { name="errorist"; version="0.1.0"; sha256="0zq5h2wffn9d3f3blzh736478k91smlvz5hxy55hcjqffpxcp4ah"; depends=[searcher]; }; - errorizer = derive2 { name="errorizer"; version="0.2.1"; sha256="10p7ydm81x2gls0wn692llgj2rxhg4s96rv7gvihmgi5dflraypq"; depends=[]; }; errorlocate = derive2 { name="errorlocate"; version="1.0.0"; sha256="1j2mln5vnibfjxgsj1zagswyf13kw0iabm4xj5qvynyhka9jw0jz"; depends=[lpSolveAPI validate]; }; errors = derive2 { name="errors"; version="0.3.6"; sha256="1404314glbqnicrwnfzmxxf7l97pgrb2gjkgkwn100p0sj83kjdg"; depends=[]; }; errum = derive2 { name="errum"; version="0.0.3"; sha256="18frrfnhnmg4fjlpfwj8aklzfwafpwqvagm0aschkqc8mz6wnjbz"; depends=[Rcpp RcppArmadillo]; }; @@ -9012,8 +8791,8 @@ in with self; { eshrink = derive2 { name="eshrink"; version="0.1.2"; sha256="0min4j1dyd08i0fyn9a4iasjlhq08bn74bjz8vj1gq9l114v795k"; depends=[glmnet MASS]; }; esmisc = derive2 { name="esmisc"; version="0.0.3"; sha256="1d6xrdxwn85c8s60s7vzaymh7wa9f7fzd79hq5spzd12fr3zisvj"; depends=[ggplot2 raster readr]; }; esmprep = derive2 { name="esmprep"; version="0.2.0"; sha256="076sm26mkkvig2g04k32z2dlp2h9gnqgzckhirl4pqm01siknl61"; depends=[lubridate]; }; - esquisse = derive2 { name="esquisse"; version="1.1.0"; sha256="14s3qs5k2b6m36sr1f3klbdjfsr5852c4ng5d545r7idg0n33f94"; depends=[datamods ggplot2 htmltools jsonlite phosphoricons rlang rstudioapi scales shiny shinyWidgets]; }; - esreg = derive2 { name="esreg"; version="0.5.0"; sha256="1njwqm3hrcxwl6y7gwa4zq0q5139293qk503ahw23dxwzdsiy2z5"; depends=[Formula quantreg Rcpp RcppArmadillo]; }; + esquisse = derive2 { name="esquisse"; version="1.1.1"; sha256="0prjvl6551rkbklwbdd2nzs1iah6daifgz8cskqzikqg9whkg9j1"; depends=[datamods ggplot2 htmltools jsonlite phosphoricons rlang rstudioapi scales shiny shinyWidgets]; }; + esreg = derive2 { name="esreg"; version="0.6.0"; sha256="0q8na05dq1gacpijv005bzan8skyzzhj8z00fzx46d27xdz7qisw"; depends=[Formula quantreg Rcpp RcppArmadillo]; }; ess = derive2 { name="ess"; version="1.1.2"; sha256="1cmw20nn39ssyqiyn50w0ws28mq4cd26yhzr7mv97haaqjjjkv5h"; depends=[igraph Rcpp]; }; essHist = derive2 { name="essHist"; version="1.2.2"; sha256="0rvlxfcl42h4pjqf37mx7bc4k21iwvnys6l5rf2jsl7yk1b9hmbn"; depends=[Rcpp]; }; essentials = derive2 { name="essentials"; version="0.1.0"; sha256="163wv4szfanbpiw5f6lhw1dnns5prql43iz27zgcp5z2rsxlb894"; depends=[]; }; @@ -9052,13 +8831,12 @@ in with self; { evaluate = derive2 { name="evaluate"; version="0.15"; sha256="0pbwj02y2j7r0msa7747ih1p32xm9bcyr8fa7bysfslb199ywnl8"; depends=[]; }; evclass = derive2 { name="evclass"; version="1.1.1"; sha256="00lbhcgswpv0amz0mb93kx9p91sf0d7zvxfw9i8x1zpmpfd6nhcj"; depends=[FNN]; }; evclust = derive2 { name="evclust"; version="2.0.2"; sha256="107x61vmkfmy3bmcaywz96qj35bmz4nydd0zn9amm2xnbb37lg31"; depends=[FNN limSolve Matrix mclust plyr quadprog R_utils]; }; - evd = derive2 { name="evd"; version="2.3-4"; sha256="1vkg50kha3jskrsf80ir5nv9gnpcgbiw9ls9jmvcwz8wca5ml511"; depends=[]; }; - evdbayes = derive2 { name="evdbayes"; version="1.1-1"; sha256="0lfjfkvswnw3mqcjsamxnl8hpvz08rba05xcg0r47h5vkgpw5lgd"; depends=[]; }; + evd = derive2 { name="evd"; version="2.3-6"; sha256="1djchcx38832k7yip0mqdm6p56fzsnskp4px8d1nq93dy328pnwf"; depends=[]; }; event = derive2 { name="event"; version="1.1.1"; sha256="0w3v8j61y7vr0cjl8a1rkvi4pyjlfhmzzn1n4dgkivac4iafzqjj"; depends=[rmutil]; }; eventInterval = derive2 { name="eventInterval"; version="1.3"; sha256="0nybzy2mpmazcvz06mkv7l9741mjm3i2q2sindq0777vb2k4504v"; depends=[MASS]; }; eventTrack = derive2 { name="eventTrack"; version="1.0.1"; sha256="0ha108d801jqlx6qgvwikn7lnyq0gijmaxc96c7sdzawn3b4s93w"; depends=[muhaz survival]; }; - eventdataR = derive2 { name="eventdataR"; version="0.2.0"; sha256="11apbbj68x1kxpwvihf4ng7wxy54jl1aw7r9hyq6gn7h8sk6lpjn"; depends=[]; }; - eventglm = derive2 { name="eventglm"; version="1.2.1"; sha256="0w8nqdkw4i4d6y12a5b0l587f2h2pgkjhif93nbs27n4kvv42idm"; depends=[geepack sandwich survival]; }; + eventdataR = derive2 { name="eventdataR"; version="0.3.0"; sha256="10vdfbld75lpz13a11lvkgrw207svf0y6cgf59h54a8qckglhxmv"; depends=[]; }; + eventglm = derive2 { name="eventglm"; version="1.2.2"; sha256="0f9vmm47g6cfvspil44zki2isd49zy6hx4cvl3vqksj57pbw8g0p"; depends=[geepack sandwich survival]; }; eventr = derive2 { name="eventr"; version="1.0.0"; sha256="08ljjvfrnfmi49b9bgizvvswxydln8ny901grn5j288pq0djjqyk"; depends=[dplyr magrittr purrr]; }; eventstream = derive2 { name="eventstream"; version="0.1.0"; sha256="0imrs872b6fjvw74smniiiicvizyign6wmwwybljk704cshzcy2f"; depends=[abind AtmRay changepoint dbscan glmnet MASS tensorA]; }; evgam = derive2 { name="evgam"; version="0.1.4"; sha256="0xdmqhg77dbb47pwzgj2hxs83a9yscknz9pmh9a33snaba9llc6r"; depends=[mgcv Rcpp RcppArmadillo]; }; @@ -9072,16 +8850,16 @@ in with self; { evolqg = derive2 { name="evolqg"; version="0.2-9"; sha256="1y1pq2hdilqkj6hk02km9aaaynz1calcw00r5k1rxlc4wfq1wx70"; depends=[ape coda expm ggplot2 igraph Matrix MCMCpack mvtnorm plyr Rcpp RcppArmadillo reshape2 vegan]; }; evolvability = derive2 { name="evolvability"; version="2.0.0"; sha256="0l81d48zvvnbxlx1mj4qwga1kdzk05pzdvsp4ghi93pzzynfqn9s"; depends=[ape coda lme4 Matrix]; }; evoper = derive2 { name="evoper"; version="0.5.0"; sha256="064fcpd04ws8v6sl0bakiw34jmmfpg1w5pkq94y2gh1c576x4vwz"; depends=[boot data_table deSolve futile_logger ggplot2 plot3D plyr reshape RNetLogo rrepast]; }; - evt0 = derive2 { name="evt0"; version="1.1-3"; sha256="08sbyvx49kp3jsyki60gbbnci26d6yk0yj2zcl4bhfac8c3mm6ya"; depends=[evd]; }; evtclass = derive2 { name="evtclass"; version="1.0"; sha256="1ny43sry257cxlg56f0lj1szv9ci3ymskj6l5sn43l5a2pq62g4l"; depends=[evd fitdistrplus RANN]; }; evtree = derive2 { name="evtree"; version="1.0-8"; sha256="1dmzbsyrg8wwzzqcxzqmgm7yai37lh9lkjhizhr2h0k03s5xdv1k"; depends=[partykit]; }; ewoc = derive2 { name="ewoc"; version="0.3.0"; sha256="0r8b5vq0qzp3f0dasxmrngldqlymca90sj019rzs1a0qf28wlgbr"; depends=[coda doParallel doRNG foreach Formula ggplot2 rjags]; }; exCon = derive2 { name="exCon"; version="0.2.5"; sha256="0gqnv01dw4ncf3x3p74pc6f14a1ixq7icl2p18hsmvxdqqg7kgy7"; depends=[jsonlite]; }; + exact_n = derive2 { name="exact.n"; version="1.0.0"; sha256="199wj5fpipnipbzn6m7qb3rf6nqjbd57fbxz27g2y5w21g0qd07s"; depends=[]; }; exact2x2 = derive2 { name="exact2x2"; version="1.6.6"; sha256="1c7lsl2zvnighzylp7z3w74rl7p8zfg0fphw5fxv2i0m8sslzq73"; depends=[exactci ssanv]; }; exactLoglinTest = derive2 { name="exactLoglinTest"; version="1.4.2"; sha256="0j146ih9szzks9r45vq1jf47hrwjq081q1nsja5h1gpllks8217h"; depends=[]; }; - exactRankTests = derive2 { name="exactRankTests"; version="0.8-34"; sha256="1i4mwz61mjlh1ai3dww2pjkicx9ww8c4mljnr8xlawh91479lva9"; depends=[]; }; + exactRankTests = derive2 { name="exactRankTests"; version="0.8-35"; sha256="1qv9i57chhz8xiv0j8r47rbigyqs72fa7ssz99inyc0s8gzskd3y"; depends=[]; }; exactci = derive2 { name="exactci"; version="1.4-2"; sha256="08phqmpj7f6mjbwfnykqmfmg7g9h6ksj3hyryn79d7kwxyh994i7"; depends=[ssanv testthat]; }; - exactextractr = derive2 { name="exactextractr"; version="0.8.1"; sha256="11s58vc63r9kah815a18ihb0x2nmnjnpngybw3yr2d6715sz89nc"; depends=[raster Rcpp sf]; }; + exactextractr = derive2 { name="exactextractr"; version="0.8.2"; sha256="0x4axrq9iznvajqy07gcfcrvzniz5yj6wabchgksg0fqz0xancnc"; depends=[raster Rcpp sf]; }; exactmeta = derive2 { name="exactmeta"; version="1.0-2"; sha256="1v807ns799qajffky4k18iah0s3qh2ava6sz5i85hwx9dhkz19h4"; depends=[]; }; exampletestr = derive2 { name="exampletestr"; version="1.6.5"; sha256="144rfi83g79xhw3v5vn4qfqmxixy9pk2ir8dm42qk0jhd9v2awng"; depends=[checkmate fs magrittr ore purrr readr rlang roxygen2 rstudioapi strex stringr styler usethis withr]; }; exams = derive2 { name="exams"; version="2.3-6"; sha256="1cn0gmaayv857zl7l7zmnblmpx84qkjxqrigrymy578y04qjc4zx"; depends=[]; }; @@ -9095,7 +8873,7 @@ in with self; { excessmort = derive2 { name="excessmort"; version="0.6.1"; sha256="0qkj30csq96qg7r8vdl79n31dhz69vh49qz4gpb3r2fr32pn497k"; depends=[dplyr ggplot2 lubridate rlang scales tidyr]; }; excluder = derive2 { name="excluder"; version="0.3.3"; sha256="080my5aiql9vpgqbr9lwkn4g5mmb20392ddc3rm638dlyphagips"; depends=[cli curl dplyr iptools janitor lubridate magrittr maps rlang stringr tidyr tidyselect]; }; excursions = derive2 { name="excursions"; version="2.5.2"; sha256="1a0vywxhh0bxjcf8v5gdk1n6cjxrby7750a7qdwhzsgxna3l3gga"; depends=[Matrix sp withr]; }; - exdex = derive2 { name="exdex"; version="1.1.1"; sha256="0z3an0s2rm5d369jc9p3brwfc6pnakwj247c3gkz1i8izvf64s57"; depends=[chandwich Rcpp RcppArmadillo RcppRoll]; }; + exdex = derive2 { name="exdex"; version="1.2.1"; sha256="1j3ljbqv1cvxf95yva0ml7dwr8yy98ch697adbvwl8w8l3sjnv3l"; depends=[chandwich Rcpp RcppArmadillo RcppRoll]; }; exdqlm = derive2 { name="exdqlm"; version="0.1.2"; sha256="0wkiihdvgf7lyzv02l10spxcn127w1jblz6fbr7yf16mfq0m9mlk"; depends=[brms coda crch dlm FNN GeneralizedHyperbolic HyperbolicDist LaplacesDemon magic tictoc truncnorm]; }; exif = derive2 { name="exif"; version="0.1.0"; sha256="12phqn5x1x0xs2xczl3064q983dalm261vqpyafhdcndm1y3gwbc"; depends=[Rcpp]; }; exifr = derive2 { name="exifr"; version="0.3.2"; sha256="0iqm513h7951q3hg8maf2hbprqmsm93cb3mbg3g91qawpx77494c"; depends=[curl jsonlite plyr rappdirs tibble]; }; @@ -9107,7 +8885,7 @@ in with self; { expandFunctions = derive2 { name="expandFunctions"; version="0.1.0"; sha256="0661l4ab0xhjidmh8ycvymhp3wgxafm7nd1c59bfpxhyhz76n1p4"; depends=[glmnet orthopolynom plyr polynom]; }; expectreg = derive2 { name="expectreg"; version="0.52"; sha256="1cb2k3ndzxw9sd9znmmd0f2pfpa1lvvvm9vvj3z44b4vcb2lf9vl"; depends=[BayesX colorspace fields Matrix mboost quadprog Rcpp RcppEigen]; }; experDesign = derive2 { name="experDesign"; version="0.1.0"; sha256="1v2j3jyxyzwkzc3y5n6pzd31yigkfwcmf12df3104m3kn86iq81r"; depends=[]; }; - experiment = derive2 { name="experiment"; version="1.2.0"; sha256="0f8h4pj2y7cd2s1q44q4mrg9cirnpz0bkn4xm04hz1rpjxb4xlv1"; depends=[boot MASS]; }; + experiment = derive2 { name="experiment"; version="1.2.1"; sha256="0lzxwpcz7m4wngfw0wyazkhh4icn9zjd8jmgf6ym2zzk3xc4dji1"; depends=[boot MASS]; }; experimentr = derive2 { name="experimentr"; version="0.1.0"; sha256="0ji2031r108rzna00zhsh70kfcnhcscz0an0jv0vvj00hrakl0yr"; depends=[]; }; expint = derive2 { name="expint"; version="0.1-7"; sha256="01d0a7pc4qx7044a0cymnv5ld88r90vdvlqjbnzg9qlfbizdgyvw"; depends=[]; }; expirest = derive2 { name="expirest"; version="0.1.2"; sha256="1fzgs8pniypgd1ws5dkiylgjdwgxwyrblcnvirmwfzcrgyvbmwfs"; depends=[ggplot2]; }; @@ -9116,27 +8894,24 @@ in with self; { explore = derive2 { name="explore"; version="0.8.0"; sha256="1jlyal2yqfq9laj3g1810pzky987gsfcrdl3ycvwl00mbjkk5h4m"; depends=[assertthat broom dplyr DT forcats ggplot2 gridExtra magrittr MASS rlang rmarkdown rpart rpart_plot shiny stringr tibble tidyr]; }; exploreR = derive2 { name="exploreR"; version="0.1"; sha256="154j5wiiy9vqdvh1qvdkz2fdp2phcygbbjl7nj5nkn07xwxbsc77"; depends=[ggplot2]; }; expm = derive2 { name="expm"; version="0.999-6"; sha256="1p5dapwv8ycxaysgi6imnby04i4kh1c5a2czqa4wygz0s8pr2y9c"; depends=[Matrix]; }; - expose = derive2 { name="expose"; version="0.0.3"; sha256="0dlxlxm3g9d8vmgp13i1825z1jzah94ih1vyif46s43xq0nf9anj"; depends=[e1071 foreach gam ggplot2 glmnet Matrix nnet polspline RColorBrewer Rcpp repmis SuperLearner xgboost]; }; expp = derive2 { name="expp"; version="1.2.5"; sha256="0hb4392biyy85gs7af4p9m7r51ijmqr7wp7c7b0i7lzdf1bnd7fz"; depends=[deldir rgeos sp spatstat_geom spdep]; }; expperm = derive2 { name="expperm"; version="1.6"; sha256="0cybna0q3qn3slyc4lv5rby4pr0xkwq0h6n7hl1zhsaqv4c2zc5b"; depends=[Rcpp]; }; expsmooth = derive2 { name="expsmooth"; version="2.3"; sha256="0alqg777g7zzbjbg86f00p2jzzlp4zyswpbif7ndd0zr8xis6zdc"; depends=[forecast]; }; expss = derive2 { name="expss"; version="0.11.1"; sha256="11g50v3cgr7j1gi9i301lbl58dhjsfhw0x7462fgldwr90k3b94z"; depends=[data_table htmlTable maditr matrixStats]; }; + expstudy = derive2 { name="expstudy"; version="1.0.1"; sha256="12rd1kkz30rl87k7bpz2v3820f13qsrjx39xvl7i9xvxjd9mppyc"; depends=[assertthat checkmate data_table dplyr dtplyr glue lifecycle magrittr pillar purrr rlang stringr tibble tidyr tidyselect]; }; exptest = derive2 { name="exptest"; version="1.2"; sha256="0wgjg62rjhnr206hkg5h2923q8dq151wyv54pi369hzy3lp8qrvq"; depends=[]; }; exreport = derive2 { name="exreport"; version="0.4.1"; sha256="0vj60rchhrc5q6x1kv7b95fcmh2a5qynli2w54rrrw1nx54xm8c2"; depends=[ggplot2 reshape2]; }; - exsic = derive2 { name="exsic"; version="1.1.1"; sha256="1k6nqs9i4iivxnk4nkimp6zvdly274wibkmx9n0wz01gnzxqil0p"; depends=[markdown stringr]; }; extRC = derive2 { name="extRC"; version="1.2"; sha256="0mkvic9nr0asd0g04nlfiy81d7am9a3i65ibxyvbdwsxnf92p8ya"; depends=[MASS]; }; extRatum = derive2 { name="extRatum"; version="1.0.4"; sha256="1w4xfr7ps565xczmn6pr7g4551rj28df1j0y9vckvxdbb4dk1p11"; depends=[dplyr sf tidyr]; }; - extRemes = derive2 { name="extRemes"; version="2.1-1"; sha256="00ps7yggp89sx1j0w6c8dk0la3k95rwjv1iz7rdfqy7i46xjf6as"; depends=[distillery Lmoments]; }; + extRemes = derive2 { name="extRemes"; version="2.1-2"; sha256="19q560prq02h3bwk01jb68693qb5bhsv8wiqhia7v5knm34qv8x7"; depends=[distillery Lmoments]; }; extWeibQuant = derive2 { name="extWeibQuant"; version="1.1"; sha256="08dzw5xfgqx0c7ac632c5mg5jmjjw7wwpcr4c9lvz5rv72ykh2rh"; depends=[]; }; extdplyr = derive2 { name="extdplyr"; version="0.1.5"; sha256="1zbnp0h0lv1dr40dhdw6ii8rmc5lxcq4wjsm83xpd3y8x9xpglnl"; depends=[dplyr lazyeval tidyr]; }; extendedFamily = derive2 { name="extendedFamily"; version="0.2.1"; sha256="0h1wply55cjclhblxmb4pd9qmiwk8vha7vk0i00ab46n7dc1yqa0"; depends=[assertthat numDeriv]; }; exteriorMatch = derive2 { name="exteriorMatch"; version="1.0.0"; sha256="0cdfj1n502iws1g03rk7x0c18zyazqf3vci9kjm6lrv4j2qwrvip"; depends=[]; }; - extfunnel = derive2 { name="extfunnel"; version="1.3"; sha256="162w5b2wjs3yqy8jisamsapav6swa8sskf1b6x5hglnrv3i4qyyy"; depends=[rmeta]; }; - extlasso = derive2 { name="extlasso"; version="0.2"; sha256="05774y0i01lrbyws6zx5ymhcglllv1wc7gzrnyx8i5d1lxdinsyd"; depends=[]; }; - extraBinomial = derive2 { name="extraBinomial"; version="2.1"; sha256="0qmvl35f7n78kghszwyaz4wzbswqy4p98c3b6alzrc2ldsq6pq5z"; depends=[]; }; + extlasso = derive2 { name="extlasso"; version="0.3"; sha256="01vmnajxc52gk7kj20x8b80lh8qi932g8213mkvvixzsz3ipf689"; depends=[]; }; extraDistr = derive2 { name="extraDistr"; version="1.9.1"; sha256="1gypnbvdzczl0mvznvy8r7hzsvc5gvdvi2mmzj21cqdw9n63944r"; depends=[Rcpp]; }; extraTrees = derive2 { name="extraTrees"; version="1.0.5"; sha256="1rvvp2p9j8ih8fid1n17606pa23bjg3i2659w1l6w0jkb1p23zcx"; depends=[rJava]; }; - extrafont = derive2 { name="extrafont"; version="0.17"; sha256="0b9k2n9sk23bh45hjgnkxpjyvpdrz1hx7kmxvmb4nhlhm1wpsv9g"; depends=[extrafontdb Rttf2pt1]; }; + extrafont = derive2 { name="extrafont"; version="0.18"; sha256="0mx810mld67vb1w3wkl4fhpjmkq32lgpq5x1c0a9rf8li5wskrj4"; depends=[extrafontdb Rttf2pt1]; }; extrafontdb = derive2 { name="extrafontdb"; version="1.0"; sha256="115n42hfvv5h4nn4cfkfmkmn968py4lpy8zd0d6w5yylwpzbm8gs"; depends=[]; }; extraoperators = derive2 { name="extraoperators"; version="0.1.1"; sha256="1clyp97ssmdq9ggbv3w5yskx7khnlm4ji7ym3k3b4bx1pazcw4q4"; depends=[]; }; extras = derive2 { name="extras"; version="0.2.0"; sha256="08nlragdwl16ziykn0ygq78h6j8s2idzmhx2w3prrndkbbd4gqbp"; depends=[chk lifecycle]; }; @@ -9153,7 +8928,6 @@ in with self; { eyeTrackR = derive2 { name="eyeTrackR"; version="1.0.1"; sha256="14m7l8v0ry1ami1jl0xjp743m1ycklgfwi06vk5amppdp5w3w3qr"; depends=[data_table plyr stringr]; }; eyedata = derive2 { name="eyedata"; version="0.1.0"; sha256="1xnll3x1sm0rv6hq2w22wa9n5qm8r827m7sr3dj54xb1i8j75gj3"; depends=[dplyr]; }; eyelinker = derive2 { name="eyelinker"; version="0.2.1"; sha256="0wijd45p6j2qal6wnj7zywks8p9v3m9cmyp7axmk44mrjdjx2i71"; depends=[intervals readr stringi stringr tibble]; }; - eyetracking = derive2 { name="eyetracking"; version="1.1"; sha256="0ajas96s25hjp3yrg42hp78qjhl1aih04mjirkskx32qsyq5hfpv"; depends=[]; }; eyetrackingR = derive2 { name="eyetrackingR"; version="0.2.0"; sha256="1hpiy84zzsvqqlrw8c7wrcmdggncwf3jq7q6m961lp62d2hhs576"; depends=[broom broom_mixed dplyr ggplot2 lazyeval purrr rlang tidyr zoo]; }; ez = derive2 { name="ez"; version="4.4-0"; sha256="0a58s94x576dfz7wcbivrr2hmdh5x1vy16zwkqp9fmdzqx38pagq"; depends=[car ggplot2 lme4 MASS Matrix mgcv plyr reshape2 scales stringr]; }; ez_combat = derive2 { name="ez.combat"; version="1.0.0"; sha256="1vpycf6gambwg8218wwjc9h3rhsin7qrhh0mpd3r6n9fp03y634f"; depends=[]; }; @@ -9169,24 +8943,18 @@ in with self; { ezr = derive2 { name="ezr"; version="0.1.5"; sha256="0r4zq0864xpnmczg1zpaasi348j1fllrn0rqfa5fmjh245chcpd4"; depends=[data_table DT ggplot2 ggridges moments shiny shinydashboard weights]; }; ezsim = derive2 { name="ezsim"; version="0.5.5"; sha256="03x75vmf75qsmk4zb09j7xrb11w31rpfwd3dvv12nwjgndh9bnld"; depends=[digest foreach ggplot2 Jmisc plyr reshape]; }; fANCOVA = derive2 { name="fANCOVA"; version="0.6-1"; sha256="04mw0blgpwdk6wdg8llrig43psgc0vb42cbimvzbnym8v503dsn3"; depends=[]; }; - fAsianOptions = derive2 { name="fAsianOptions"; version="3042.82"; sha256="13p1r93rgnf03wj0kkfpw4w4dlzd1ypkam50xqpjfm38qm4zvkds"; depends=[fBasics fOptions timeDate timeSeries]; }; fAssets = derive2 { name="fAssets"; version="3042.84"; sha256="0aj3gjd54ajviikwh075bympw7dx2dcsgj5p8j96vx2qbbwjmgvb"; depends=[ecodist energy fBasics fMultivar MASS mvnormtest robustbase sn timeDate timeSeries]; }; fBasics = derive2 { name="fBasics"; version="3042.89.1"; sha256="1m8x1f9kvsbdcn3ys24hw0vgbxrzdrcp11ai0s3pilp7q91j095d"; depends=[gss MASS spatial stabledist timeDate timeSeries]; }; fBonds = derive2 { name="fBonds"; version="3042.78"; sha256="1yb5vyqj66m82xks5qi5cnsppylpprbk656z4lxzg30873hi8pcf"; depends=[fBasics timeDate timeSeries]; }; - fCertificates = derive2 { name="fCertificates"; version="0.5-4"; sha256="1a49gkzvb83lqqw65lxlaszpicn663hwi9wrbsb3f6z7znylkzaf"; depends=[fBasics fExoticOptions fOptions]; }; fCopulae = derive2 { name="fCopulae"; version="3042.82.1"; sha256="005ydbgyz7b1g3l2dn4r46113siyza9ag27f51r28md885dnbjpi"; depends=[fBasics fMultivar timeDate timeSeries]; }; fDMA = derive2 { name="fDMA"; version="2.2.6"; sha256="1kz1mksvr7pjkg64mbdlw73575rpr3balcwmbniwdhgmvqv82wk3"; depends=[doParallel foreach forecast gplots iterators itertools png psych Rcpp RcppArmadillo tseries xts zoo]; }; - fExoticOptions = derive2 { name="fExoticOptions"; version="3042.80"; sha256="1b3y7j5ywic6xhsj2afq6y5f5l0npgav854rb87938rjckz95d4h"; depends=[fBasics fOptions timeDate timeSeries]; }; - fExpressCertificates = derive2 { name="fExpressCertificates"; version="1.3"; sha256="0dcfwl0ib87p748hvwscm5ii9fhfarqfl3zqxa8kin2n0hrvkdb6"; depends=[fCertificates fExoticOptions fOptions Matrix mvtnorm tmvtnorm]; }; fExtremes = derive2 { name="fExtremes"; version="3042.82"; sha256="1n0afql4csgsqf7j9x2v8yxncvpknms643l9knm0fqb4pdbaw58c"; depends=[fBasics fGarch timeDate timeSeries]; }; fGarch = derive2 { name="fGarch"; version="3042.83.2"; sha256="06c6f07bg05cbn7s40ak6ywyja4cfbznazj5my9rcyahjvc6b553"; depends=[fastICA fBasics Matrix timeDate timeSeries]; }; - fHMM = derive2 { name="fHMM"; version="1.0.1"; sha256="0jn102zap2p4naid1li5vwlv713nqcsilik8sgnqfjq662h8ivdl"; depends=[foreach MASS progress Rcpp RcppArmadillo]; }; + fHMM = derive2 { name="fHMM"; version="1.0.2"; sha256="1dyr1d49wpyakfdl4alan8561ij3x9gx9kmgf0szkg24yzvj8cw5"; depends=[foreach MASS progress Rcpp RcppArmadillo]; }; fICA = derive2 { name="fICA"; version="1.1-2"; sha256="0dqw3qybnpdnvhfh5inkc4011bzhsxvhpv8zzmkm3q5m6hkc6rlg"; depends=[JADE Rcpp RcppArmadillo]; }; fImport = derive2 { name="fImport"; version="3042.85"; sha256="0rm4mwhk5ial016vl6dny8s87gd5i9p04akdyg2fndpcqwfmb5lc"; depends=[timeDate timeSeries]; }; - fMRIscrub = derive2 { name="fMRIscrub"; version="0.8.6"; sha256="0ky2a4p06p2c2dgb6wwa4spq4jsn4hvyk8c864c21j8hp6m4yaa9"; depends=[e1071 MASS pesel Rcpp RcppArmadillo robustbase]; }; fMultivar = derive2 { name="fMultivar"; version="3042.80.1"; sha256="0v61sf9x54ymka9x15vz38afj1lxmgfpcwrr73lzhccf6ci6fx9m"; depends=[cubature fBasics mvtnorm sn timeDate timeSeries]; }; fNonlinear = derive2 { name="fNonlinear"; version="3042.79"; sha256="0kwjs7xx4ykw14mw3pff2axrq497jl4g23gbayswb8vrx1qhjibd"; depends=[fBasics timeDate timeSeries]; }; - fOptions = derive2 { name="fOptions"; version="3042.86"; sha256="1cqyggb1hb7z0gfgkziynz7nm85z0fn3bvz1iwpy49yy8ll7rfzr"; depends=[fBasics timeDate timeSeries]; }; fPortfolio = derive2 { name="fPortfolio"; version="3042.83.1"; sha256="1knyrjgfzwf4ppvnb5n325p5f6sidr6q53ss0zw8binhj22gli4y"; depends=[fAssets fBasics fCopulae kernlab MASS quadprog Rglpk rneos robustbase Rsolnp slam timeDate timeSeries]; }; fRLR = derive2 { name="fRLR"; version="1.2.1"; sha256="1fac5ykl1bv0y8m73vzyhghmj6f0q9iy7zr4142wzh2i2zzr0mpz"; depends=[Rcpp]; }; fRegression = derive2 { name="fRegression"; version="3042.82"; sha256="0pi777xfk101g0r2qpcd0qxqqfnvck3sii990d946ljw6366mamc"; depends=[fBasics lmtest mgcv nnet polspline timeDate timeSeries]; }; @@ -9218,25 +8986,22 @@ in with self; { factset_analyticsapi_engines = derive2 { name="factset.analyticsapi.engines"; version="3.0.1"; sha256="0v96z837dii1q7mbpd48zwpl2qjzqnhignb80g0xkc4iygsnrrms"; depends=[caTools httr jsonlite R6 rlang]; }; factset_protobuf_stach_v2 = derive2 { name="factset.protobuf.stach.v2"; version="1.0.3"; sha256="1b8w4fcjlznpwziwb7cv9a5nhc410h8a9af09430379qhmvin9mx"; depends=[R6 RProtoBuf]; }; factset_protobuf_stachextensions = derive2 { name="factset.protobuf.stachextensions"; version="1.0.1"; sha256="1mqni01ryv8m4yw87c1m0qf4nr5zhs3654ph04xbqxhq5h0qrwng"; depends=[jsonlite R6 stringr]; }; - fad = derive2 { name="fad"; version="0.3-3"; sha256="1xii15lcfb72jmwgqfb4x0h0xs7cxj1hzx8289sq1ibakiwkkv5l"; depends=[Matrix Rcpp RcppEigen RSpectra]; }; + fad = derive2 { name="fad"; version="0.9-1"; sha256="19j8n13r50sc1srpi4vj58h15yp89im2x7ga5323rmwklx1yj6zg"; depends=[Matrix Rcpp RcppEigen RSpectra]; }; fail = derive2 { name="fail"; version="1.3"; sha256="0vfm6kmpmgsamda5p0sl771kbnsscan31l2chzssyw93kwmams7d"; depends=[BBmisc checkmate]; }; - fairadapt = derive2 { name="fairadapt"; version="0.2.1"; sha256="13qly0yjf33z1n1id2a5hrciq17fgfw87rj7gyicy23jsc21va0w"; depends=[assertthat cowplot ggplot2 igraph qrnn quantreg ranger scales]; }; - fairml = derive2 { name="fairml"; version="0.6.1"; sha256="0nnz62r50gh2wbqxq1l6s0r4vf0dxiqfr39s1yv2zhghph9hc7rj"; depends=[CVXR glmnet optiSolve]; }; + fairadapt = derive2 { name="fairadapt"; version="0.2.2"; sha256="0dm9q9r7jacapbd1jzwr6d5vsqlrpg20a5h3gy38y8i807yhhs1v"; depends=[assertthat cowplot ggplot2 igraph qrnn quantreg ranger scales]; }; + fairml = derive2 { name="fairml"; version="0.6.3"; sha256="06vc6aak3vc9mcvj0n6g4bkgnz8v02kd8nhpi34qzg1f4k75515i"; depends=[CVXR glmnet optiSolve]; }; fairmodels = derive2 { name="fairmodels"; version="1.2.0"; sha256="0mrr1a5f208wimzrfvknwqv89vzfidsai1nrd672384915fkrcwn"; depends=[DALEX ggplot2 patchwork scales]; }; fairness = derive2 { name="fairness"; version="1.2.2"; sha256="12jf2p8gmj5d6r9h9cwy208qwyqi606b54v0d99vpr171yijqvqk"; depends=[caret devtools e1071 ggplot2 pROC]; }; fairsubset = derive2 { name="fairsubset"; version="1.0"; sha256="0iw16fs2mb9p14vr34izw3sirbndyy8w07df3scy7gkkcx2nz2bz"; depends=[matrixStats]; }; faisalconjoint = derive2 { name="faisalconjoint"; version="1.15"; sha256="08sb4za8qyadvigq2z7b0r44qk2lpahpnz9nv16xfjb1zhdkz5w3"; depends=[]; }; - fakeR = derive2 { name="fakeR"; version="1.0"; sha256="0f4ngnd8s34j1327zp3aqnsiw0gfxkp1i24ng20hrmfl13s1qmxp"; depends=[mvtnorm polycor pscl VGAM]; }; fakemake = derive2 { name="fakemake"; version="1.10.4"; sha256="04k5dkfw07np0fgpp0n9zzswfnk2qrvv2dzghqb4mwasnlffqz57"; depends=[fritools igraph MakefileR]; }; falcon = derive2 { name="falcon"; version="0.2"; sha256="09hlvwwj3k3nhcsxijjvv8x74a9m200ayjjplrp4baxvczwyq341"; depends=[]; }; falconx = derive2 { name="falconx"; version="0.2"; sha256="0648mvbc7ga7vr2xqzyln3dgd11h5s4bqhv3p55mj7smr4qv7hv9"; depends=[]; }; fam_recrisk = derive2 { name="fam.recrisk"; version="0.1"; sha256="1lyrq7bq7p7ijc2vf545nazw4akncz08548ya1dv3lsc5jmkgfzj"; depends=[]; }; - fam2r = derive2 { name="fam2r"; version="1.2"; sha256="0pq5cmzwk3s8cz5x8dsfb2d6qfpapkrwbzvkqmqkhcwhwryy40mm"; depends=[Familias paramlink]; }; famSKATRC = derive2 { name="famSKATRC"; version="1.1.0"; sha256="1xbh0by4sjxrmy00v1svcj3lb98p9krpncbhpjbli1jd2p47yk60"; depends=[bdsmatrix CompQuadForm coxme kinship2]; }; fame = derive2 { name="fame"; version="2.21.1"; sha256="18lzf2vxyzlmd73m9q0si663mjjm66nrf7q1iy0fw73gpvxqr9bf"; depends=[tis]; }; - familial = derive2 { name="familial"; version="1.0.2"; sha256="1pk4l8bgfs6nl8d3w8gksv4szfbqnw6sv0lzh1piyvkpyylfm1i7"; depends=[DepthProc ggplot2 matrixStats]; }; + familial = derive2 { name="familial"; version="1.0.3"; sha256="18s3vmp357wddj7lca5ayf24h2fhdljz2flhay85g1b9zhkylyqk"; depends=[DepthProc ggplot2 matrixStats]; }; familiar = derive2 { name="familiar"; version="1.1.0"; sha256="0jcask0qw9gjy0cp7fyvvqqz77rjqrwdgsqzxzivs02i1r8l849m"; depends=[data_table rlang rstream survival]; }; - fanc = derive2 { name="fanc"; version="2.2"; sha256="1gdkxb2ay0lyldjpg4s2fbavjxl4q1bf9q438csqa4vzl5ywv2w8"; depends=[Matrix]; }; fancycut = derive2 { name="fancycut"; version="0.1.2"; sha256="1xg5qjxf77g10h07x6rvb8c3klc9gbr77bkw352qpas268pkswl2"; depends=[]; }; fanovaGraph = derive2 { name="fanovaGraph"; version="1.5"; sha256="1hffda52yk24slbgsfdgkpg3vsryfnhlw09r39cbyz483i7xd8d0"; depends=[DiceKriging igraph sensitivity]; }; fanplot = derive2 { name="fanplot"; version="4.0.0"; sha256="08zd2af26ah1rdkzxi1sv4c4l06jpxd6m38q3xy657k2jm90rkkc"; depends=[]; }; @@ -9255,7 +9020,7 @@ in with self; { fastAdaboost = derive2 { name="fastAdaboost"; version="1.0.0"; sha256="1pv1y6znvc37pgwk99v4r0hljhipq8v6r3r5cb5vhgyl0bfi8g38"; depends=[Rcpp rpart]; }; fastCorrDiff = derive2 { name="fastCorrDiff"; version="0.5"; sha256="0fis04xfarvmhpdkh7524ffga8f8svpcn3837rqwy0g039dcfa64"; depends=[irlba Matrix plyr RSpectra]; }; fastDummies = derive2 { name="fastDummies"; version="1.6.3"; sha256="1pw1bpp69sbs8yc1s5ffz11q249ljfwbgfrq6irg5pyp37z38fdx"; depends=[data_table stringr tibble]; }; - fastGHQuad = derive2 { name="fastGHQuad"; version="1.0"; sha256="1rjia8wggadr9xwxcmzmal0rc4g6pa3dr5888fbbnb6abl8b2lrj"; depends=[Rcpp]; }; + fastGHQuad = derive2 { name="fastGHQuad"; version="1.0.1"; sha256="1zj7nsbnx4g253m3dpz9vi3zk3jxwrixwjw1ks6n4shpb4dlkp2w"; depends=[Rcpp]; }; fastGraph = derive2 { name="fastGraph"; version="2.1"; sha256="0lz199607hqpwxzhff4jzhmjq6cbakd335iyclmlscllgfzgnhql"; depends=[]; }; fastHICA = derive2 { name="fastHICA"; version="1.0.2"; sha256="1h794ybbii0k7v3x0r1499zxdqa1i1dpi3i7idzqdrffnb5kmwlv"; depends=[energy fastICA]; }; fastICA = derive2 { name="fastICA"; version="1.2-3"; sha256="0l49cmxm1n4dzrv8q3q3mq4drcjgby4f1dmpwfdb8jxn9ij85vz9"; depends=[]; }; @@ -9282,7 +9047,7 @@ in with self; { fastdigest = derive2 { name="fastdigest"; version="0.6-3"; sha256="02csl261v7nassi5119ygw6jglm8q6rssg7lgyxzj73mkyilm832"; depends=[]; }; fasterElasticNet = derive2 { name="fasterElasticNet"; version="1.1.2"; sha256="1hr0wc6s6zpq1hkfgshf0dqjxb7s2849bb8lb04nmi6p42r3628g"; depends=[Rcpp RcppArmadillo]; }; fasterize = derive2 { name="fasterize"; version="1.0.3"; sha256="10bzl77c1b9jhcn1xp467qzp2n8c7s3wpxn53qjh1nwvbri5kd32"; depends=[raster Rcpp RcppArmadillo sp]; }; - fastglm = derive2 { name="fastglm"; version="0.0.1"; sha256="1vqw02j4y28mngki87r42f1mhlkvajqp2gpbvk0l2adrkz70l0bn"; depends=[Rcpp RcppEigen]; }; + fastglm = derive2 { name="fastglm"; version="0.0.2"; sha256="04740jc0pp673jbgjg1f1gx584jmdp84h936byw6633ns200zfyi"; depends=[BH bigmemory Rcpp RcppEigen]; }; fasthplus = derive2 { name="fasthplus"; version="1.0"; sha256="05j4lg1gkkz1vi99dx73igvk9xyrli8j6m4hzhpcnyhy0h9bxiqj"; depends=[]; }; fastkmedoids = derive2 { name="fastkmedoids"; version="1.2"; sha256="1z98ndxhq2ag870g0xqkw04b4k722994vh0pq46bw8bqc9v7bpkk"; depends=[Rcpp]; }; fastlogitME = derive2 { name="fastlogitME"; version="0.1.0"; sha256="1wpbcjb3ncxl904492alikslnqg53zgx6psxx7qllspd43s8ymv7"; depends=[]; }; @@ -9290,7 +9055,7 @@ in with self; { fastmaRching = derive2 { name="fastmaRching"; version="1.1.0"; sha256="085xr5i6h6vwl1flzbkwqsm8d815s0p02p0mir60jqjvy0s7haip"; depends=[raster rgdal sp]; }; fastmap = derive2 { name="fastmap"; version="1.1.0"; sha256="0aw29hnq3ppn7bsnwg9d9sp84k1cvq30lrmfzqn315n0nhkfa4wi"; depends=[]; }; fastmatch = derive2 { name="fastmatch"; version="1.1-3"; sha256="0qcq1gwl9pijgp34giyq5y9rk0ly3d7xza2b7r68xx63ifqa1vqx"; depends=[]; }; - fastmatrix = derive2 { name="fastmatrix"; version="0.4"; sha256="1mbqyrj01fqbnpncqy9lk2dshqk1l55i2r2ll7gs10ykqbbjjlsp"; depends=[]; }; + fastmatrix = derive2 { name="fastmatrix"; version="0.4-1"; sha256="1rfdc7m3gbj872ic4vgvilwca82bjrf0k3dsdsajiv6w72niljj9"; depends=[]; }; fastmit = derive2 { name="fastmit"; version="0.1.1"; sha256="13hczsfbzssd272kpbq8l2l64lqrkmi2j6f3xyp9jvvxdd506kq0"; depends=[Rcpp RcppArmadillo]; }; fastnet = derive2 { name="fastnet"; version="1.0.0"; sha256="1c07msypxj8ilpa1il9jjbgylwpdxv8j8gak362xdmbm4b1bwlm6"; depends=[doParallel foreach igraph tidygraph]; }; fastpos = derive2 { name="fastpos"; version="0.4.1"; sha256="0h6drzzc3f1dc5ydi5x9c7wday18sgzi8zn4pf5wxlzsc4qj0pzf"; depends=[future MASS plyr Rcpp RcppArmadillo RcppProgress]; }; @@ -9303,9 +9068,9 @@ in with self; { fastverse = derive2 { name="fastverse"; version="0.2.3"; sha256="1jp9lipx19zihakjp2la8rk4pxks0p8saagp75nr0xq2vdylqg27"; depends=[collapse data_table fst kit magrittr matrixStats]; }; fat2Lpoly = derive2 { name="fat2Lpoly"; version="1.2.5"; sha256="08bbd17aqmfcacvk283bpf9cp1isf5pgfdciwxn0f7ahdzd81g4s"; depends=[kinship2 multgee]; }; faux = derive2 { name="faux"; version="1.1.0"; sha256="0cmgsm8c8w5d5zk00j4872x7fby0rdi7lmw0w0ncahlnh72grpjm"; depends=[dplyr ggplot2 jsonlite lme4 rlang truncnorm]; }; - fauxnaif = derive2 { name="fauxnaif"; version="0.6.1"; sha256="1hw6lkxvxd65wajr0mpmbg8lvx0sd84py1apzqfnr7xpb4r1hi85"; depends=[glue lifecycle rlang]; }; + fauxnaif = derive2 { name="fauxnaif"; version="0.7.0"; sha256="02mpqriy1v3rplv78frgq957li7b82iwdns1lm0j306d29r3lm71"; depends=[cli rlang]; }; fauxpas = derive2 { name="fauxpas"; version="0.5.0"; sha256="129fzqb7wsskbn50s8x0marr4wm8jrns6hiycqcsk166k3dnyyy8"; depends=[httpcode R6 whisker]; }; - faviconPlease = derive2 { name="faviconPlease"; version="0.1.1"; sha256="1si4s2cllia8hdlwdxjzbb2vi3n08dr76vm2mnsvqkvd3p9m60pr"; depends=[xml2]; }; + faviconPlease = derive2 { name="faviconPlease"; version="0.1.2"; sha256="0vc2c7mj8igq4nbs9ass8s33rjc4bkly0y9c2x7vh82hajbzrvwn"; depends=[xml2]; }; favnums = derive2 { name="favnums"; version="1.0.0"; sha256="0siax7gjr25lpf1li3hawx6nviggs68c0lap2d9i38azlhvj891w"; depends=[]; }; fbRads = derive2 { name="fbRads"; version="0.2"; sha256="1a65gfvizzm6psspcvlhkxligdf9j1whrgzkg7ww520lk3z8lnnd"; depends=[bit64 data_table digest futile_logger jsonlite plyr RCurl]; }; fbRanks = derive2 { name="fbRanks"; version="2.0"; sha256="17kbmdpgqkj2n951c6mdsrgfga6kiij1gqiw1wpi0q3fq4dlfrzx"; depends=[igraph stringr]; }; @@ -9317,7 +9082,6 @@ in with self; { fca = derive2 { name="fca"; version="0.1.0"; sha256="0jcdyylb0byz70k3kypa2mdd5sc5nq81jfbpljjg2amczq7s5wzy"; depends=[]; }; fcaR = derive2 { name="fcaR"; version="1.1.1"; sha256="1jhhjsgw3vsgrz5mv961m61y39cs5zpi0m82yf38r6ngrjy52cqg"; depends=[forcats fractional magrittr Matrix purrr R6 Rcpp registry settings stringr tibble tikzDevice]; }; fcci = derive2 { name="fcci"; version="1.0.1"; sha256="02q6q0q7fqdbp20fdf33jbkh0aj9nzl6dwysr0nn146ciz3vqgin"; depends=[assertthat Rcpp rlang]; }; - fcd = derive2 { name="fcd"; version="0.1"; sha256="091wbf5iskcgyr7jv58wrf590qijb0qcpninmvm3xrwxi34r37xr"; depends=[combinat glmnet MASS]; }; fcfdr = derive2 { name="fcfdr"; version="1.0.0"; sha256="16mnpr64x00qwbgq9pw69k941yb0i7mx7ncsilahicprxqyfpfww"; depends=[bigsplines cowplot data_table dplyr fields ggplot2 hexbin Hmisc locfdr MASS polyCub spatstat_geom]; }; fcirt = derive2 { name="fcirt"; version="0.1.0"; sha256="1wiyiz51mkm5kd95xmpvlwng51awpp4y133dd5q88mnafrxyij1h"; depends=[BH numDeriv Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; fclust = derive2 { name="fclust"; version="2.1.1"; sha256="11dsf7mb075m1m1ilqsacc0s4907wq6alvdfh6nizsyr01wiqw3b"; depends=[MASS Rcpp RcppArmadillo]; }; @@ -9326,20 +9090,21 @@ in with self; { fcros = derive2 { name="fcros"; version="1.6.1"; sha256="04yr6lqs38lczsmdvdm78qn63836qj7xwspgh3h3n3gh8cssd83x"; depends=[]; }; fcuk = derive2 { name="fcuk"; version="0.1.21"; sha256="1sb7p1m5qb88028mrw95lhh8l7dxj696hjh88nfsdpnscryknfpv"; depends=[magrittr purrr stringdist tibble]; }; fdANOVA = derive2 { name="fdANOVA"; version="0.1.2"; sha256="1pycq5a4czqzi8wcfmlc9ncg827j7n0qxyj90wcv39nbcrnl3da1"; depends=[doBy doParallel fda foreach ggplot2 magic MASS]; }; - fda = derive2 { name="fda"; version="5.5.1"; sha256="0fm2vswc8fdi2p1axby0hjwh8m6lc1zrdikrpiamilr6w9m2zanw"; depends=[deSolve fds Matrix]; }; + fda = derive2 { name="fda"; version="6.0.3"; sha256="1lvp4i4hqz650k27sa5flbdlkalihc79xy9128hfhr16h6wi8n10"; depends=[deSolve fds]; }; fda_usc = derive2 { name="fda.usc"; version="2.0.2"; sha256="0z44vkzjm2h6r5af0k1iic1szvw82rbwjrm541zlwn2jycj4q96a"; depends=[doParallel fda foreach iterators MASS mgcv nlme]; }; fdaACF = derive2 { name="fdaACF"; version="1.0.0"; sha256="0qrsj25p6h2xg25v0ayk8x31d4whyy0mpf2xdpw3hcwhb71mbfhn"; depends=[CompQuadForm fda pracma vars]; }; fdaMixed = derive2 { name="fdaMixed"; version="0.6"; sha256="0hyhb67qvvhyq68k5h4ffvsl4lmw66nfy5l14kwxnn42h3b810sc"; depends=[Formula Rcpp RcppArmadillo]; }; fdaMocca = derive2 { name="fdaMocca"; version="0.1-0"; sha256="0jqk07cs62hhsp68bpf0lcggn547jp7qjc4w55dq51fhshppc280"; depends=[doParallel fda foreach Matrix mvtnorm]; }; - fdaPDE = derive2 { name="fdaPDE"; version="1.0-9"; sha256="06hm1f30rpy37xz9ybvhk759y10p8ijy7slnl9cvp4gqwzy2i8b7"; depends=[geometry Matrix plot3D plot3Drgl RcppEigen rgl]; }; + fdaPDE = derive2 { name="fdaPDE"; version="1.1-4"; sha256="0bbsfwgdhnv2yv1avs1zc87wafff1xqy9d0d0vyaw2va6c3amrfs"; depends=[geometry Matrix plot3D plot3Drgl RcppEigen rgl]; }; fdaPOIFD = derive2 { name="fdaPOIFD"; version="1.0.2"; sha256="0rs61ja58mxpadfgkvdjq14rgaikcga0alc5a1afnrjx4djswl1k"; depends=[FastGP fdapace ggplot2 magrittr MASS patchwork reshape2 tibble]; }; + fdacluster = derive2 { name="fdacluster"; version="0.1.1"; sha256="1rr1hcnpzya53h09p4yc1784kzrw7wlcylax4x2pdp1grzf1wakq"; depends=[dplyr ggplot2 magrittr nloptr purrr Rcpp RcppArmadillo tibble tidyr]; }; fdadensity = derive2 { name="fdadensity"; version="0.1.2"; sha256="1i2xzchlsixgjzyfmbv547sy6mq90xrnyc2kpd11wwfgfrpj1ix3"; depends=[fdapace Rcpp]; }; fdakma = derive2 { name="fdakma"; version="1.2.1"; sha256="0j9qgblrl7v4586dd6v0hjicli6jh8pkk5lzn8afpl75xfs24six"; depends=[]; }; fdaoutlier = derive2 { name="fdaoutlier"; version="0.2.0"; sha256="1jpd9mszd0grn7rwi3dmgl6l5dggwsnz1kyljz2gcfm2wck2zhbz"; depends=[MASS]; }; fdapace = derive2 { name="fdapace"; version="0.5.8"; sha256="15pslr1nysmraqd1swi3diljc9cl62z4x8nib2v5fqf3a3xz66sn"; depends=[Hmisc MASS Matrix numDeriv pracma Rcpp RcppEigen]; }; fdapaceShiny = derive2 { name="fdapaceShiny"; version="1.0.5"; sha256="1cy1rcmsyr78q3wqkaw3lvqzlr07n7djrqqpwm3y8xz60fybs8p6"; depends=[bs4Dash config dplyr DT fdapace ggplot2 golem htmltools magrittr plotly purrr reshape2 shiny shinyjs shinyWidgets stringr tidyr]; }; fdasrvf = derive2 { name="fdasrvf"; version="1.9.7"; sha256="06kq9rlszydr55sg17yybwa89qd4d1826jyw4kmx4aligx7ycqq6"; depends=[coda doParallel fields foreach lpSolve Matrix matrixcalc mvtnorm Rcpp RcppArmadillo testthat tolerance viridisLite]; }; - fdatest = derive2 { name="fdatest"; version="2.1"; sha256="0zdnmssir5jz2kbfz4f4xshjfv4pivqx7cbh2arlx6ypkjrjws8n"; depends=[fda]; }; + fdatest = derive2 { name="fdatest"; version="2.1.1"; sha256="13sd85ypx2z07qxsqhsbc5w0yasf01yw06qx91ymh0yr8538x3x3"; depends=[fda]; }; fdcov = derive2 { name="fdcov"; version="1.1.0"; sha256="0savsgcifcjjqrmbpn6m30gncq5iigqxpb19l710wlx8nm98svjh"; depends=[corrplot matlab]; }; fddm = derive2 { name="fddm"; version="0.5-1"; sha256="1jn2hrl322an64q5m9rq1lifmilbzx65mb3mfhqfg8nvsgrpsffw"; depends=[Rcpp]; }; fdistr = derive2 { name="fdistr"; version="0.1.0"; sha256="1i9nq4jmszbmwk4m6jfn7rifsn7aay40cj6kz23b9ihj3phqffi8"; depends=[dplyr ggplot2 magrittr usethis]; }; @@ -9374,7 +9139,7 @@ in with self; { fergm = derive2 { name="fergm"; version="1.1.4"; sha256="1d979z2m5f13i1w9d8kh9rnaafavsap169w0nycpd5j2f3dfhyn7"; depends=[ergm extrafont ggplot2 matrixStats network reshape2 rstan]; }; fermicatsR = derive2 { name="fermicatsR"; version="1.4"; sha256="1587f67fypj22rdi1319zq765lcc9z518bzl1jr4lz6c8lrzfm9i"; depends=[]; }; ferrn = derive2 { name="ferrn"; version="0.0.1"; sha256="1zp18hfnvmdb2w0qj432yj9a3939lad2hqymrmj8y1w3k0razifk"; depends=[dplyr geozoo gganimate ggforce ggplot2 ggrepel magrittr purrr rlang scales stringr tibble tidyr tourr]; }; - ff = derive2 { name="ff"; version="4.0.5"; sha256="0dsh6llfdz04w94xr3yl2b4vkk9g3rwhvfnxcd025v2424krxfls"; depends=[bit]; }; + ff = derive2 { name="ff"; version="4.0.7"; sha256="1yl3ipzz9bjkfy9bbna7xz5n7iz4lchnw5l7agww7by764yk6iqa"; depends=[bit]; }; fflr = derive2 { name="fflr"; version="2.0.3"; sha256="15nwbf7n9x065sahhp31rdrramqigki9w67x1xyll86g8ndfwn98"; depends=[httr jsonlite tibble]; }; ffmanova = derive2 { name="ffmanova"; version="1.1.1"; sha256="19kdlcslqnwcsdjxx0n86is5cjz21sn8vpylyq8s4i7q7nrlyxwp"; depends=[]; }; ffmetadata = derive2 { name="ffmetadata"; version="1.0.0"; sha256="0gjv5fl3p0kz28c91l4qf34a2685a24l5841ixdg7wivfs5v9npv"; depends=[httr jsonlite]; }; @@ -9394,7 +9159,6 @@ in with self; { fgitR = derive2 { name="fgitR"; version="0.2.0"; sha256="0ncwd3wgkll11447qjlq3ihx876d1jv067pcrfswia31jrb700wl"; depends=[devtools git2r httr]; }; fglsnet = derive2 { name="fglsnet"; version="1.0"; sha256="00qn4k4xm1zfkz77lys468c1mfx3vyfjkf19wdbcvgssrmf6w0xd"; depends=[lmtest MASS Matrix matrixcalc network sandwich sna]; }; fgm = derive2 { name="fgm"; version="1.0"; sha256="0i6lbqxxjq78dql14qwqs7slnn0kyls2g3a9biabny2narwf6n3m"; depends=[fdapace JGL]; }; - fgof = derive2 { name="fgof"; version="0.2-1"; sha256="0bclkb3as0fl2gyggqxczndfyj9pfnni5pa3inpn5msrnjg4g2j2"; depends=[mvtnorm numDeriv]; }; fgpt = derive2 { name="fgpt"; version="2.3"; sha256="1d0qzsn4b68jhk07k97iv765jpmzzh1gwqpid0r76vg4cwqfs3n7"; depends=[]; }; fgui = derive2 { name="fgui"; version="1.0-8"; sha256="024fzd1c7iwqprn26hwjb9l2qlvvyzl449d7iixy0x69djwsrysv"; depends=[]; }; fhircrackr = derive2 { name="fhircrackr"; version="1.0.1"; sha256="0dq7gwfcksjqirhmq4hxfrm64i2gaqjqklkrv7xq7ribvzb8accv"; depends=[data_table dplyr httr plyr stringr xml2]; }; @@ -9406,12 +9170,12 @@ in with self; { fields = derive2 { name="fields"; version="13.3"; sha256="1hs4k5a9hh0r5fsrnpnvs6wvf78xpjzj8a2j6643dsz73a5q6ln6"; depends=[maps spam viridis]; }; fiery = derive2 { name="fiery"; version="1.1.3"; sha256="1rwnmm4n59wdsvb57bj8mx1qhz93jbvfb73sl111nwqazphrhid1"; depends=[assertthat crayon future glue httpuv later R6 reqres stringi uuid]; }; fig = derive2 { name="fig"; version="1.0.0"; sha256="1mzvng4r4xmkmbl55pspjk9bcvkri96vkmjaqkjn8nqxv39sy1pr"; depends=[R6]; }; - figpatch = derive2 { name="figpatch"; version="0.1.0.1"; sha256="1chshlyc3ygyvgzyph4mix3a6kvv4w0vbnss58472h0mgl7mgx8v"; depends=[ggplot2 magick patchwork]; }; - file2meco = derive2 { name="file2meco"; version="0.2.2"; sha256="0j4mcap10b0rplcsh8b8p41vpag2m7y9d7kyw7zn1w01vm0k9y2g"; depends=[ape dplyr magrittr Matrix microeco rhdf5 tidyr yaml]; }; + figpatch = derive2 { name="figpatch"; version="0.2"; sha256="0sy63131al6z0hlhpb11aphlxdigb0pqk9bq9mxc9nbc59036jjq"; depends=[ggplot2 magick magrittr patchwork]; }; + file2meco = derive2 { name="file2meco"; version="0.2.3"; sha256="0k7glv1zicywr8lm3912fsrnyhzyv5vv84aflaafsc02vmhzzpgl"; depends=[ape dplyr magrittr Matrix microeco rhdf5 tidyr yaml]; }; filearray = derive2 { name="filearray"; version="0.1.3"; sha256="10kpr5c7yq9hk1b6x611vi1pcsis0x1xpi0rs1dqgv310hswa0k5"; depends=[BH digest Rcpp]; }; filebin = derive2 { name="filebin"; version="0.0.5"; sha256="1k13vwppk3f3acnyz32wrjmr80x0lbdzv0sx74xr87n1kbrrv5fn"; depends=[dplyr httr janitor logger purrr stringi tibble tidyr]; }; filehash = derive2 { name="filehash"; version="2.4-3"; sha256="1ga17smgjd4qsnf5a7qk0giwhpc5969ylqj520favs1k6b4y557k"; depends=[]; }; - filehashSQLite = derive2 { name="filehashSQLite"; version="0.2-4"; sha256="1higvkmj4wvnwpvayqinzaygiksij20d77dx118q0gffsczadamh"; depends=[DBI filehash RSQLite]; }; + filehashSQLite = derive2 { name="filehashSQLite"; version="0.2-6"; sha256="1758wpzq2h7biwpdlrqhi84k35fbpfpxnji6j79zisr825fqjkpq"; depends=[DBI filehash RSQLite]; }; filelock = derive2 { name="filelock"; version="1.0.2"; sha256="00ql5fw1hidpfnm0szaavf43ahmsnvdbi8i5lr1nrcc90yaiaadc"; depends=[]; }; filematrix = derive2 { name="filematrix"; version="1.3"; sha256="1v3aj1ng742msb0sfdnjsbqb508mqjf8jlq2v33vxldhradw5w0b"; depends=[]; }; filenamer = derive2 { name="filenamer"; version="0.2.3"; sha256="19gavhh5q7dziv0yc000w06qp58wk2cm52cxjl33p1q4cjk6gg3m"; depends=[]; }; @@ -9423,7 +9187,7 @@ in with self; { finalfit = derive2 { name="finalfit"; version="1.0.4"; sha256="1cfyl8w488v8ax15jb4xjddd4r8ilhljhamzk3kjbdy8039l0sa4"; depends=[bdsmatrix boot broom dplyr forcats GGally ggplot2 gridExtra lme4 magrittr mice pillar pROC purrr scales stringr survival tidyr]; }; finbif = derive2 { name="finbif"; version="0.6.4"; sha256="1r2nl6n1d55x49iykzga0wi80zsybd7zmldix5bkc5qkca5xvzk8"; depends=[digest httr jsonlite lubridate lutz]; }; finch = derive2 { name="finch"; version="0.4.0"; sha256="0q7riaxms460c6z2gb8i0q4pb348bnvry46bjd7pb9mh8fnl1i8b"; depends=[data_table digest EML hoardr xml2]; }; - findInFiles = derive2 { name="findInFiles"; version="0.3.0"; sha256="1cnnx9ky1pd0aj3bf67z75b0dgmdgj90w0yjxlrny42a7iqnyw4n"; depends=[crayon htmlwidgets stringi stringr tibble vctrs]; }; + findInFiles = derive2 { name="findInFiles"; version="0.4.0"; sha256="1saxi8l4006wwxrw18g7wx0pj7l427a2rnb723k0irlhvq0icgwq"; depends=[crayon htmlwidgets shiny stringi stringr tibble vctrs]; }; findInGit = derive2 { name="findInGit"; version="0.1.1"; sha256="1j5mvp34nsczmvp5jx7c9gp20q7aqaxrqm2zvj8aq31rc8mfaxk9"; depends=[crayon htmlwidgets stringr]; }; findR = derive2 { name="findR"; version="0.2.1"; sha256="1a7cf6kd7i2l4ffr2b17nb9xnpsjhf6fcwpjy06r0qgcapnfp54b"; depends=[pdftools stringr]; }; findpython = derive2 { name="findpython"; version="1.0.7"; sha256="0jf10jpqla90x03kl3k77gnd255zmw9rvr8d724vb17cqawh9yar"; depends=[]; }; @@ -9436,7 +9200,6 @@ in with self; { finnishgrid = derive2 { name="finnishgrid"; version="0.1.0"; sha256="0gndrllz3y7yqrg5vw6ba7dg7hn4w3085rpy7h9hdd8swxqfvlc6"; depends=[httr jsonlite]; }; finnts = derive2 { name="finnts"; version="0.1.1"; sha256="0r76p2lfc39cs3rziq2psk3fia3y58daz2a91xadfkahii0hmy2q"; depends=[cli Cubist dials doParallel dplyr earth foreach generics glmnet gtools hts kernlab lubridate magrittr modeltime modeltime_gluonts modeltime_resample parsnip plyr purrr recipes rsample rules stringr tibble tidyr tidyselect timetk tune workflows]; }; finreportr = derive2 { name="finreportr"; version="1.0.4"; sha256="145idg2c6qmqp29afalnhxxzky08j21dmm05mp3zf63aq9mq41d4"; depends=[curl dplyr httr rvest XBRL xml2]; }; - fipe = derive2 { name="fipe"; version="0.0.1"; sha256="055jav8h4wws76jahm2d5dj49wkvzchh3f2vk5d50pny4dc7smar"; depends=[dplyr forcats furrr future httr jsonlite lubridate magrittr purrr readr stringr tibble tidyr]; }; fipio = derive2 { name="fipio"; version="1.1.1"; sha256="0wvx64nazbv44hdsj3q6mz70m81asmwgxp28sapaaal36l180jfs"; depends=[]; }; fipp = derive2 { name="fipp"; version="1.0.0"; sha256="0wr3czwsqwa1bpdcjk0r1739vjanxc0fv0vnl3r5lgykrbhw9v3r"; depends=[matrixStats Rcpp RcppArmadillo]; }; firebase = derive2 { name="firebase"; version="1.0.1"; sha256="0sdv3l13byqn4sfp360scj4260adyvnbvzxkc88zvg3k33fx5hmn"; depends=[base64enc cli htmltools jose jsonlite openssl R6 shiny]; }; @@ -9445,6 +9208,7 @@ in with self; { fishbc = derive2 { name="fishbc"; version="0.2.1"; sha256="15mlr113qgndjhyry8img50jfk0si81kw2cdgl896b0g4djc5la3"; depends=[]; }; fishdata = derive2 { name="fishdata"; version="1.0.1"; sha256="0hskmw93pyrm5wxn1dw8vi18v11jnf03yx375hjkk38hcfnp6n5k"; depends=[]; }; fisheye = derive2 { name="fisheye"; version="0.1.0"; sha256="0yrgr0nhnn768q6hc2dsjz7y3n7p7ci0rdfqsickafgv2srdrh83"; depends=[sf]; }; + fishflux = derive2 { name="fishflux"; version="0.0.1.6"; sha256="0n2lqx995w3vy0kq45kh8n79wbg2lsa12mar03kr2vc65acys6j2"; depends=[BH curl dplyr fishualize ggplot2 httr plyr Rcpp RcppEigen RcppParallel rfishbase rstan rstantools StanHeaders tidybayes tidyr]; }; fishkirkko2015 = derive2 { name="fishkirkko2015"; version="1.0.0"; sha256="1s8vsf604rc6qk0gahn61p3q8p9dhsbq14wsmrin7icq2xgl3y81"; depends=[]; }; fishmethods = derive2 { name="fishmethods"; version="1.11-3"; sha256="17fghylmc4xs8b9p2ybgdpjxkjb4zg7qxhb75sdj0q0bvs1mhyiq"; depends=[boot bootstrap data_table lme4 MASS numDeriv]; }; fishmove = derive2 { name="fishmove"; version="0.3-3"; sha256="1knbv087cg0czjcgdbrlpg69pp1dxb57b7ak5j1mcy7ay3a41a9h"; depends=[boot ggplot2 MASS plyr]; }; @@ -9452,8 +9216,7 @@ in with self; { fishualize = derive2 { name="fishualize"; version="0.2.3"; sha256="0iygh6mlxlsk6yq26i5rry9gh6qkrn5sbgsa2wpdxmm1ip1nzml0"; depends=[curl downloader dplyr ggplot2 gridExtra httr magrittr png rlang scales stringr tidyr]; }; fit_models = derive2 { name="fit.models"; version="0.64"; sha256="1nk4x2q8cv79zcls61saf627ac0fci6jcrd6lmzk61asm2zhc27p"; depends=[lattice]; }; fitConic = derive2 { name="fitConic"; version="1.2"; sha256="0mwnbq32mpj8d4127jwb283mn3gs4hm0klwk9prsrfkdnhqai41i"; depends=[pracma]; }; - fitDRC = derive2 { name="fitDRC"; version="1.1.1"; sha256="09z9l27iwl0fd3zy6rsdhmy8qbm5d9a4wcaj5rxp7ynlnpi102aa"; depends=[]; }; - fitHeavyTail = derive2 { name="fitHeavyTail"; version="0.1.2"; sha256="17jdqxrycqkpmb9pzfqrwcax12j6dx7w122989qrpwqsx48ax133"; depends=[ICSNP mvtnorm]; }; + fitHeavyTail = derive2 { name="fitHeavyTail"; version="0.1.4"; sha256="1cb7cnir7fpvf8j8abw8imz6zxg4dznjmkyrbcx0yr09qvjal81b"; depends=[ghyp ICSNP mvtnorm numDeriv]; }; fitODBOD = derive2 { name="fitODBOD"; version="1.4.1-1"; sha256="0sx7la3bcii8fh8ril5ibbr4x97zgqwl7h889gnk6j733pcmgx0p"; depends=[bbmle hypergeo]; }; fitPoly = derive2 { name="fitPoly"; version="3.0.0"; sha256="0ws1vsh8if9i9i7820ak32b0bysjc0z09nbrk17qpms0b11cpc3g"; depends=[foreach]; }; fitTetra = derive2 { name="fitTetra"; version="1.0"; sha256="0ia6wk4gicpmn6kclsd28p7v1npwfv2blagiz0cxzwfw3njv103g"; depends=[]; }; @@ -9482,7 +9245,6 @@ in with self; { flamingos = derive2 { name="flamingos"; version="0.1.0"; sha256="0gic6y8wpxffpyi3zy0wh7apy4z6argxbz284n80k2mzh6lh029k"; depends=[Rcpp RcppArmadillo]; }; flan = derive2 { name="flan"; version="0.9"; sha256="0g4prvlwiaf6ig6kghniqpcaxyws27345mb5qmcpgsy4jzdc4k7j"; depends=[Rcpp RcppArmadillo RcppGSL]; }; flare = derive2 { name="flare"; version="1.7.0"; sha256="0f992dmgnr6s8g3386i9bjfyf08q8srgw7sjz2yx7snj8znq7251"; depends=[igraph lattice MASS Matrix]; }; - flars = derive2 { name="flars"; version="1.0"; sha256="06qma1ar1nj7n6g9alk1qydm5bkj6lsjx0pqkikxpb41d91civqk"; depends=[fda MASS Matrix Rcpp RcppEigen]; }; flashCard = derive2 { name="flashCard"; version="0.1.0"; sha256="1l1g3hy0gchsmdj04d065rl71hkvxydyqsmav5qwxyz2mdkknkhi"; depends=[htmlwidgets jsonlite]; }; flashClust = derive2 { name="flashClust"; version="1.01-2"; sha256="0l4lpz451ll7f7lfxmb7ds24ppzhfg1c3ypvydglcc35p2dq99s8"; depends=[]; }; flashlight = derive2 { name="flashlight"; version="0.8.0"; sha256="0gzpq3cmb8kspjhk74qrhlkdj8fjw75sywnwvkwbvy3cp11hffp6"; depends=[cowplot dplyr ggplot2 MetricsWeighted rpart rpart_plot tidyr tidyselect withr]; }; @@ -9492,7 +9254,7 @@ in with self; { flatxml = derive2 { name="flatxml"; version="0.1.1"; sha256="1qsiqi8aszk9djlhysf6lcm41dq4pcw5jv6mdvb1mgxni7g3sgfv"; depends=[crayon httr RCurl xml2]; }; fledge = derive2 { name="fledge"; version="0.1.0"; sha256="151iwb3p45dnph69wipidnczhzy0b073gsphbjgaii5if86w9cmx"; depends=[cli desc enc gert purrr rematch2 rlang tibble usethis whoami withr]; }; flexCWM = derive2 { name="flexCWM"; version="1.92"; sha256="1fxwq12mki10ikf5lyh1pb58svfzs4llg68v4d9iznia8aa0grhq"; depends=[ContaminatedMixt mclust numDeriv statmod]; }; - flexclust = derive2 { name="flexclust"; version="1.4-0"; sha256="0x7wxk8y46ndyz6fdacym0rd6p9wh3pcfr28chjcg5d7fm849zl2"; depends=[class lattice modeltools]; }; + flexclust = derive2 { name="flexclust"; version="1.4-1"; sha256="13akk3w6a76jpws5v9108c3hdmb8i6gm0sc06lr2hqly0pgpfyfn"; depends=[class lattice modeltools]; }; flexdashboard = derive2 { name="flexdashboard"; version="0.5.2"; sha256="1bh759llp15fxrx2rwvxd8p3w84vjmkid32ism7zg49a127fjib4"; depends=[htmltools htmlwidgets jsonlite knitr rmarkdown shiny]; }; flexiblas = derive2 { name="flexiblas"; version="3.1.0"; sha256="0kgkxzx8lgw0lmszwd4fipvhpgak753bdcm81w25ilp5pzd8x6ii"; depends=[]; }; flexmet = derive2 { name="flexmet"; version="1.1"; sha256="1xcs4gs5aanvfsf6bgj28jsjdxrx0dz475xsw8hd6y44qdgw1sqb"; depends=[]; }; @@ -9505,7 +9267,7 @@ in with self; { flextable = derive2 { name="flextable"; version="0.7.0"; sha256="15vr5lb87712mymsvv01kz9s1fb54sx5kybsa2x547k5g10dbrbm"; depends=[base64enc data_table gdtools htmltools knitr officer rlang rmarkdown uuid xml2]; }; flifo = derive2 { name="flifo"; version="0.1.5"; sha256="03x66l3ryrjvwbxxd0ncjrb5w9kc7fswmp5psb1cb7r87f395gm3"; depends=[bazar pryr]; }; flightplot = derive2 { name="flightplot"; version="0.1.0"; sha256="1276lsahr9kdsvp1ismm3b5syvhfr7ifizzd79f8w1h2rjblva8x"; depends=[dplyr geosphere ggplot2 ggrepel magrittr rlang sf tibble]; }; - flightsbr = derive2 { name="flightsbr"; version="0.1.2"; sha256="15ws4gykms0wqdaabk1lc7cbkfzgblphq16fh85k38lay4fclvh6"; depends=[data_table httr parzer pbapply rvest]; }; + flightsbr = derive2 { name="flightsbr"; version="0.2.0"; sha256="16cn3m73pd2lp6p5ixswxjdbzwj6hq60jwzymp3r30rwzcqrh4wh"; depends=[data_table httr parzer pbapply rvest]; }; flimo = derive2 { name="flimo"; version="0.1.1"; sha256="0j15zx1p2nb04hwxa8klmwpqc7gj0g2da8a03z01caf4si5cg5b1"; depends=[ggplot2 gridExtra JuliaConnectoR]; }; flintyR = derive2 { name="flintyR"; version="0.0.2"; sha256="13bzglcwd4r6q8ix8diy2dljns722k29zbd782fvkxc59ikx7dja"; depends=[assertthat doParallel foreach Rcpp RcppArmadillo testthat]; }; flip = derive2 { name="flip"; version="2.5.0"; sha256="08x5hwxaxbgc745gblja7gcy0b5wbp7jf90lkha75zl5cc9iyksl"; depends=[cherry e1071 plyr someMTP]; }; @@ -9530,6 +9292,7 @@ in with self; { flux = derive2 { name="flux"; version="0.3-0"; sha256="0pc9cab2pwrfl0fnz29wp7a398r49hvbi50jp8i2fk2rfvck21a7"; depends=[caTools]; }; fluxweb = derive2 { name="fluxweb"; version="0.2.0"; sha256="1ssq90fqm4p0j4g171mx208lmgz3hkxs8hgsffkawpmxgacs0gh1"; depends=[]; }; flying = derive2 { name="flying"; version="0.1.3"; sha256="04wfcsbq8icvk1nnczvic5cp4nb40hxj3g6lasyb1dvhsh0svg0q"; depends=[kableExtra knitr Rcpp rmarkdown]; }; + fm_index = derive2 { name="fm.index"; version="0.1.1"; sha256="06zqdzbriygcf8fml5mdyc2ipfpy5p6vsvrdk3kp8bk3fkyc8yd2"; depends=[Rcpp stringi]; }; fma = derive2 { name="fma"; version="2.4"; sha256="1x175mhljvplm7b2iwcvkzalv3a79p8gqj9d4f06l5v4shxlrab9"; depends=[forecast]; }; fmbasics = derive2 { name="fmbasics"; version="0.3.0"; sha256="1dnf09rgwpc7n7ydlp7r5cwy2fa4vh1h9mbjqzfhk0208kz6jpl0"; depends=[assertthat fmdates lubridate tibble]; }; fmcmc = derive2 { name="fmcmc"; version="0.5-1"; sha256="1w8qchyh3ry5nphv76pdbryp6hq8bccfhwzmsnghgzfd8hirrg27"; depends=[coda MASS Matrix]; }; @@ -9545,7 +9308,7 @@ in with self; { foghorn = derive2 { name="foghorn"; version="1.4.2"; sha256="11riav36ncxybx4yrrrwrykg9xmh2fpp5m92zl9prhi7g0rllg6f"; depends=[clisymbols crayon curl httr jsonlite rlang rvest tibble xml2]; }; foieGras = derive2 { name="foieGras"; version="0.7-6"; sha256="0g4c9id7q3jgjcgwmncp4bkw9njwb41cp6ycv7psiidkhmnzi03d"; depends=[assertthat CircStats dplyr furrr future ggplot2 lifecycle lubridate mvtnorm patchwork purrr RcppEigen sf stringr tibble tidyr TMB tmvtnorm trip]; }; folderfun = derive2 { name="folderfun"; version="0.1.4"; sha256="0rns8590r1897lj0gyrlj0zbaxjw2gjaxwnwdxiiw2kvyq7mjkis"; depends=[]; }; - folio = derive2 { name="folio"; version="1.0.0"; sha256="1al4ampy95fsxxlqhp63qmc0xn51gfa0gw2gghy28a4dqjg39sfg"; depends=[]; }; + folio = derive2 { name="folio"; version="1.1.0"; sha256="1l363zk1zwkzhrw8hh3plbgf0f87cb21729id79g2fig3vj3s61j"; depends=[]; }; fomantic_plus = derive2 { name="fomantic.plus"; version="0.1.0"; sha256="0zj50v036zal51b7744bp62c1bzjwdvzw1qwy0lyhgjxly6kb2hy"; depends=[htmltools jsonlite shiny shiny_semantic]; }; fontBitstreamVera = derive2 { name="fontBitstreamVera"; version="0.1.1"; sha256="0nipdlmhjv1wr3aidcl97nk6mppdkd65krgwqnhdsnv0jpfv761j"; depends=[]; }; fontHind = derive2 { name="fontHind"; version="0.1.1"; sha256="0qz3bj8vdy6jayy84p3vyxfwqll4v4qlklwq9wl981ii2k7g0vxf"; depends=[extrafont ggplot2 hrbrthemes]; }; @@ -9560,10 +9323,11 @@ in with self; { footBayes = derive2 { name="footBayes"; version="0.1.0"; sha256="1q2xcrrw4x2jdvxr5q3l9lh0sfg3wjw06s9qzil11pb93h5l2ik6"; depends=[arm bayesplot dplyr extraDistr ggplot2 magrittr matrixStats metRology numDeriv reshape2 rstan tidyverse]; }; footballpenaltiesBL = derive2 { name="footballpenaltiesBL"; version="1.0.0"; sha256="1my67157frp4pxl84sb6dnb7rzp99g59mp9iwwv1s6wc391zfbsp"; depends=[]; }; footprint = derive2 { name="footprint"; version="0.1"; sha256="00m3jaxiacf9wxa0wg0qxhp6c0prbf2l5c2cid6anz8rc5b6angv"; depends=[airportr dplyr magrittr rlang]; }; - foqat = derive2 { name="foqat"; version="2.0.7"; sha256="1hc1ymahch38r9k5i0rfkyv17ybc7pbn69lbnin2gvyq9c9da772"; depends=[dplyr ggnewscale ggplot2 ggplotify gridExtra lmodel2 lubridate magrittr patchwork plyr reshape2 rvest scales stringr xml2]; }; + foqat = derive2 { name="foqat"; version="2.0.7.1"; sha256="0ngk7qad57aklj0i4nzgxz8ndrwjyab7vzy7syf277ykhkxsiapd"; depends=[dplyr ggnewscale ggplot2 ggplotify gridExtra lmodel2 lubridate magrittr patchwork plyr reshape2 rvest scales stringr xml2]; }; forImage = derive2 { name="forImage"; version="0.1.0"; sha256="1p8zfndvm7x7pnryphz944hgxcchvc6mwnr6ap15m0i6kwsh0nb4"; depends=[dplyr magrittr reticulate tibble]; }; forams = derive2 { name="forams"; version="2.0-5"; sha256="1fh3m9896ksv1h7b027yb955bzyv70yafhqvn5crkzalzk3jpb0s"; depends=[vegan]; }; forcats = derive2 { name="forcats"; version="0.5.1"; sha256="12d2nv2w15085jscgidmjdnr1ryymciflcmal6ldmgp2fkl9dyy4"; depends=[ellipsis magrittr rlang tibble]; }; + forceR = derive2 { name="forceR"; version="1.0.14"; sha256="1xb9vd6j7z59nhbxlnqrahgjad9l2cnp7kzjaklg331xpm6hncri"; depends=[dplyr filesstrings magrittr purrr readr roll stringr]; }; foreSIGHT = derive2 { name="foreSIGHT"; version="1.0.0"; sha256="0f1wy7iy3189890qi0gfqwbif3qlp9bfnzzqlg1yvwxi5pw55ikm"; depends=[cowplot directlabels doParallel fields GA ggplot2 jsonlite moments progress RColorBrewer rcorpora Rcpp rlang scales viridisLite zoo]; }; foreach = derive2 { name="foreach"; version="1.5.2"; sha256="1r5gdf9fp3rprvrhf0gzl9qmmqhgdn5gscpm5hk8zxpraf3qscsn"; depends=[codetools iterators]; }; forecTheta = derive2 { name="forecTheta"; version="2.2"; sha256="1a7ip3czm8k82kb8dx95m8q47kjhifdj51gzavd1zj9ni3vwbhfn"; depends=[forecast tseries]; }; @@ -9584,7 +9348,7 @@ in with self; { forestmangr = derive2 { name="forestmangr"; version="0.9.4"; sha256="1zlp7lnawbfqw60552cwnh280spqj7p2qvn2xwz5y7wly2d7d4fm"; depends=[broom car dplyr FinCal ggdendro ggplot2 ggpmisc ggthemes gridExtra magrittr miniUI minpack_lm plyr purrr rlang scales shiny systemfit tibble tidyr]; }; forestmodel = derive2 { name="forestmodel"; version="0.6.2"; sha256="0pl9r8j2qd00b9kl585b4k54kic5fvzc56i8cn3hm5yp2hrrwyws"; depends=[broom dplyr ggplot2 rlang tibble]; }; forestplot = derive2 { name="forestplot"; version="2.0.1"; sha256="0bzwi6ws0qjq1pqiadssynbkxxd4zjp974jfdplmv16fcyszqhyi"; depends=[checkmate magrittr]; }; - forestploter = derive2 { name="forestploter"; version="0.1.4"; sha256="0ndfdqziqq1759g1kgx8vhpx0dyjafj2k7z48gklp43mwi6m5cj8"; depends=[gridExtra gtable]; }; + forestploter = derive2 { name="forestploter"; version="0.1.5"; sha256="075qf1h0nvnk8jczqlnvh17j2grz5i6ijw1k5yybfpfy2aw2brzy"; depends=[gridExtra gtable]; }; forestr = derive2 { name="forestr"; version="2.0.2"; sha256="1kz8f3x2dmsprj2r23gz61fpwg7n14nbjxr16x4cpixvnk427p94"; depends=[dplyr ggplot2 moments plyr tibble tidyr viridis]; }; forestry = derive2 { name="forestry"; version="0.1.0"; sha256="0q7m0mrig8z2b2z2fng58qlqa6g58xlhfzchil2dvjh6xf3qvsh8"; depends=[data_tree]; }; foretell = derive2 { name="foretell"; version="0.2.0"; sha256="18vi438n480gizfhnciw67gngvbjnmky19186b1wy75av7fgc1gp"; depends=[nloptr]; }; @@ -9595,13 +9359,14 @@ in with self; { formula_tools = derive2 { name="formula.tools"; version="1.7.1"; sha256="15d3ikfmsh9zszfgfkrxb3jkipl41inm7n6bhs73kwlnklnygq2g"; depends=[operator_tools]; }; formulaic = derive2 { name="formulaic"; version="0.0.8"; sha256="1nx6a73vw2hjbnqaw8x17ghhljd6z2avxv4arz3c3785pyayhg9k"; depends=[data_table]; }; formulops = derive2 { name="formulops"; version="0.5.0"; sha256="1mkpv5xjykrhgknq0gh4yg2a3j4xb8q2d6dh0wv8zd9h59hvrzda"; depends=[]; }; - forplo = derive2 { name="forplo"; version="0.1.0"; sha256="15zkzq8vb6ydvic3r2lsna64vqlq12225cpdr7dsrfkn6kqjjzd5"; depends=[]; }; + forplo = derive2 { name="forplo"; version="0.2.0"; sha256="1x01ybncb0lkx3l8zk3dnh1v8mymb9r4dms7aylnsyahlhzr6yv5"; depends=[]; }; forrel = derive2 { name="forrel"; version="1.4.1"; sha256="1328cbcnnpy3n8na2brxf2q5i3czkkiajri6zi5yfajwrb2vyg33"; depends=[glue pedmut pedprobr pedtools ribd]; }; - forsearch = derive2 { name="forsearch"; version="2.2.0"; sha256="10ihwm75q72cgwqsk3i48wjl8z0ay5bn55ys7r5wmsdh9ak0gjzs"; depends=[Cairo ggplot2 Hmisc nlme tibble]; }; + forsearch = derive2 { name="forsearch"; version="2.3.0"; sha256="1464skjcq8pzpln98rf3w04c78wjckzni4klzsi3hnka9clyhap6"; depends=[Cairo ggplot2 Hmisc nlme tibble]; }; fortunes = derive2 { name="fortunes"; version="1.5-4"; sha256="109ly9kpfn6hy294ava8795wy5z9l1bnl98hhhv8kn9naf4camdg"; depends=[]; }; - forward = derive2 { name="forward"; version="1.0.5"; sha256="0cc0s534s32b9ark2zazwqhgy0zsxb2p63r6503v82784rpqv2yv"; depends=[MASS]; }; + forward = derive2 { name="forward"; version="1.0.6"; sha256="12yk2l9cjmlr9089a8qw8arpdq997c9d9nx5xsy2x76ik65r6i3l"; depends=[MASS]; }; forwards = derive2 { name="forwards"; version="0.1.3"; sha256="07374a1ak5h8q3diqyvsw3q1grqi3679w9sshf1jkhlrj7wn0dmv"; depends=[]; }; fossil = derive2 { name="fossil"; version="0.4.0"; sha256="1hbls9m8yapnfzpv9s850ixakmnan8min1ynk7dqkbpb2px85h1p"; depends=[maps shapefiles sp]; }; + fossilbrush = derive2 { name="fossilbrush"; version="1.0"; sha256="0iwlrvp9w7fmslrbbdxx90pq9jy4n8jppvkyi0h2463ddgw9i6s0"; depends=[curl data_table dplyr igraph Matrix pbapply stringdist stringr]; }; foster = derive2 { name="foster"; version="0.1.1"; sha256="1gkn3mgxsq3p7nazw80z61yhc1dqxhjvd667xklpjka4rrk2am8p"; depends=[caret data_table dplyr randomForest raster reshape2 rgdal RStoolbox sp spatstat spatstat_geom trend yaImpute]; }; foto = derive2 { name="foto"; version="1.0.0"; sha256="10mfxgg5f1r85cwr0jjnsa4csp1afcrjvyjvp31060nm638clcgh"; depends=[raster]; }; fourPNO = derive2 { name="fourPNO"; version="1.1.0"; sha256="0a0z2403kdh3fjb0ypjjk3m6fg77bg6m7hwb5jhlymcy2rwkay7w"; depends=[Rcpp RcppArmadillo]; }; @@ -9627,13 +9392,12 @@ in with self; { fractaldim = derive2 { name="fractaldim"; version="0.8-5"; sha256="1hi5xzya528947wfb50brl00m6n6krv4sn5nzga285nncf6xprhh"; depends=[abind]; }; fractional = derive2 { name="fractional"; version="0.1.3"; sha256="1jz83y53s0xdphh1z3v3z7xhcmhx7rp0iiazw2vdsx2747r3rirn"; depends=[Rcpp]; }; fracture = derive2 { name="fracture"; version="0.2.0"; sha256="18dyq1g9b8gpac5xjry9hkmql5fmwyyghkmrrgkrrvy42q8ygn91"; depends=[Rcpp]; }; - fragility = derive2 { name="fragility"; version="1.1"; sha256="0gjxc4bykqjmj54mxjh27bzkbf8ydrzzzlb7xnq9jljmr139zhyk"; depends=[metafor netmeta plotrix]; }; + fragility = derive2 { name="fragility"; version="1.2"; sha256="0vm7ad0p3xcy32zywpdzbygic69xvxb5na8w7rliwzlhra6ryrlg"; depends=[metafor netmeta plotrix]; }; frailtyEM = derive2 { name="frailtyEM"; version="1.0.1"; sha256="0ajqmn8353va8k3idsl90xsrhpdqarfmvg84d4kwayxlqy6dmbb0"; depends=[expint ggplot2 magrittr Matrix msm numDeriv Rcpp survival tibble]; }; frailtyHL = derive2 { name="frailtyHL"; version="2.3"; sha256="115iv1d2c9mvviick8b24bn6kdbsvnf21nvfjm9a8dk0x07hrv5g"; depends=[cmprsk Matrix survival]; }; frailtySurv = derive2 { name="frailtySurv"; version="1.3.7"; sha256="0jyqnj4mscfcjg38a04246xfggnjgwdgwd7w4krz6wa1c3igzx0f"; depends=[ggplot2 nleqslv numDeriv Rcpp reshape2 survival]; }; frailtypack = derive2 { name="frailtypack"; version="3.5.0"; sha256="0yw08x6ss1af19zrm29i509gkjwmphg1hidxdfwkfgvrvcl4fnxz"; depends=[boot doBy MASS nlme rootSolve shiny statmod survC1 survival]; }; frair = derive2 { name="frair"; version="0.5.100"; sha256="1j557dqvc5xiz7xbl4h7vp55pc3hly8ci01qy36p02vlxhzf4hj3"; depends=[bbmle boot lamW]; }; - frambgrowth = derive2 { name="frambgrowth"; version="0.1.0"; sha256="1xmy1zxp7aa2n8frlxhn1bl41zda1jldvvxb3q41yam3pslc8m1q"; depends=[]; }; framecleaner = derive2 { name="framecleaner"; version="0.2.0"; sha256="1lclxjds59i1mhc8mzmgy5f7yhqwv72ylidpfvzjgslf45sjk5lp"; depends=[bit64 dplyr fastDummies forcats fs janitor lubridate magrittr purrr readr rio rlang rlist rstudioapi stringr tibble tidyselect vroom]; }; franc = derive2 { name="franc"; version="1.1.4"; sha256="0l41m53li2pvcac7m5y5gkvmw0qy5k3v0m2ljda9gdaasg5029xr"; depends=[jsonlite]; }; frapplot = derive2 { name="frapplot"; version="0.1.3"; sha256="12924szk2p0582nv97gi8pxrbv41zqpjryc6jqgg4llhp7ydz7xf"; depends=[]; }; @@ -9641,28 +9405,27 @@ in with self; { frechet = derive2 { name="frechet"; version="0.2.0"; sha256="1006mgy9avwkwy0666maac59xp4j27wq5yy3pwc3h1r05myxw379"; depends=[corrplot fdadensity fdapace Matrix osqp pracma]; }; fredr = derive2 { name="fredr"; version="2.1.0"; sha256="0073qh0drf1p38hc84m54n35hyza90m8zn48ihx3alxkiq1m8ijp"; depends=[httr jsonlite rlang tibble]; }; free = derive2 { name="free"; version="1.0.1"; sha256="0r9vd1d4pi19mnvdchx95axp0hiqs8lpgp0fn40dm89h5fd6zyb0"; depends=[Rcpp RcppArmadillo]; }; - freealg = derive2 { name="freealg"; version="1.0-4"; sha256="0bv31pydjhqhfin4ydd49aqzsxn0zhhismm0l4ijabrrvkw3n1hc"; depends=[disordR mathjaxr partitions Rcpp]; }; + freealg = derive2 { name="freealg"; version="1.0-6"; sha256="1zpyqabjrwpf8c0g2b9yb68xvmg7yl7src9qgilc61ng3qp87gfb"; depends=[disordR mathjaxr partitions Rcpp]; }; freedom = derive2 { name="freedom"; version="1.0.1"; sha256="1mrdl2cqdm2c68lx7lyixgiqw6xzwnx9c8j5q4annhiz107i9i22"; depends=[]; }; freegroup = derive2 { name="freegroup"; version="1.1-3"; sha256="11v0ph0mhk8g9zwapcp2wgr1sbdwdqh7nhbrci87myapypdncqjc"; depends=[magic magrittr plyr]; }; - freesurfer = derive2 { name="freesurfer"; version="1.6.8"; sha256="0ks6ms5vp38pykcg66w960nmfgq383iprrbbzw5dlx9xnrx4yhbh"; depends=[neurobase R_utils reshape2]; }; freesurferformats = derive2 { name="freesurferformats"; version="0.1.17"; sha256="125vmx9gw9czlp86c2byv1fdslzhjn8q0plgqnk065sjhbla46cn"; depends=[pkgfilecache rmarkdown xml2]; }; - frenchCurve = derive2 { name="frenchCurve"; version="0.1.0"; sha256="1b8lkmhydz4jq8h5p117fwaygbsillzcfx0p7w0ljj8b8v57r6l9"; depends=[sp]; }; + frenchCurve = derive2 { name="frenchCurve"; version="0.1.5"; sha256="0pgaa4c1mb6jfnakqfqq96c0bhrf9w9gg7a46cri7i99q7bafalm"; depends=[sp]; }; frenchdata = derive2 { name="frenchdata"; version="0.2.0"; sha256="13n0phncbxim9ak897hmjw1p7ph5wi3jn2m8hgmm3bywxbxcg1qz"; depends=[assertthat cli dplyr fs httr magrittr purrr readr rlang rvest stringr tibble tidyr]; }; freqdist = derive2 { name="freqdist"; version="0.1"; sha256="1pb45jabv9s3qa7v1isd5wm9b0g9p04q5h18spcaax8397s0d2fv"; depends=[]; }; freqdistributionNogives = derive2 { name="freqdistributionNogives"; version="0.1.1"; sha256="1y01yiyzgcsr8xcjgxq75ky8a6f4d2h3x82la3zcrczy7fplblq4"; depends=[]; }; - freqdom = derive2 { name="freqdom"; version="2.0.1"; sha256="0ig0ygnlcb5ndjjm5x8jpp37gvgwli9xv6zsvbbgfh72q418qswp"; depends=[matrixcalc mvtnorm]; }; - freqdom_fda = derive2 { name="freqdom.fda"; version="0.9.1"; sha256="15wq9s3v441dybc8kglpbv9hdvsr9rjjq4qp4d2ipxglfp0iqj9p"; depends=[fda freqdom mvtnorm]; }; + freqdom = derive2 { name="freqdom"; version="2.0.2"; sha256="0p09cnrjq2d95kk4sjpb8kq8h8cxw6wiw8hr916g3vpvl47vpz99"; depends=[matrixcalc mvtnorm]; }; + freqdom_fda = derive2 { name="freqdom.fda"; version="1.0.1"; sha256="1y9g85sp0w8rvhmsrln64bj1h03wkpgriqidc3pf123if58ap72m"; depends=[fda freqdom mvtnorm]; }; freqparcoord = derive2 { name="freqparcoord"; version="1.0.1"; sha256="011p8xh0i0x0w5rv5qz5a7fxwdhxd8l2bqi9bxv5almxd0y7ajqx"; depends=[FNN GGally ggplot2 mvtnorm]; }; freqpcr = derive2 { name="freqpcr"; version="0.4.0"; sha256="04s6yrzxk4v86nhs9mwam1y2lfac73r6i8af9xbbmrlzj61wiia9"; depends=[cubature]; }; freqtables = derive2 { name="freqtables"; version="0.1.1"; sha256="03xcv08f8xzmrd6msk15vljp2srv59dzzs5ngkw1p2dv917w7dq3"; depends=[dplyr rlang stringr]; }; frequency = derive2 { name="frequency"; version="0.4.1"; sha256="0sjsc803ysyg2gfzb7z4jb2sikwxs99is2m03k5glfy3ylgphn0d"; depends=[DT ggplot2 gtools knitr rmarkdown]; }; frequencyConnectedness = derive2 { name="frequencyConnectedness"; version="0.2.3"; sha256="1yzpgflldcdsd5kj0jpyj0vwx25f3l0x344glbrwvlwgdax9dkg8"; depends=[knitr pbapply urca vars]; }; frequentdirections = derive2 { name="frequentdirections"; version="0.1.0"; sha256="0rmifh221c8z3cqyqg0bfxnih9f64hvv98jz44i6grnlablfwwgw"; depends=[ggplot2]; }; - frequentistSSD = derive2 { name="frequentistSSD"; version="0.1.0"; sha256="0r2vy8n6d8c2vdijd0cyg9vv4m0w0a6m2piblky48c1wm2qznfd2"; depends=[survival]; }; + frequentistSSD = derive2 { name="frequentistSSD"; version="0.1.1"; sha256="1d54zr87795gm4qc6aw3nv9i83rhnhv14rcpkrivdxhxv8rnhnn9"; depends=[survival]; }; fresh = derive2 { name="fresh"; version="0.2.0"; sha256="1787mm6w2s5x9scxy7r9cb77rgpmy4ngwkn4z8g3gs48mrab4bd9"; depends=[htmltools rstudioapi sass shiny]; }; frictionless = derive2 { name="frictionless"; version="1.0.0"; sha256="17an6wxwb9qcj42rsm3311jx1f2d91fpq0d0831xswngc548bmp5"; depends=[assertthat dplyr glue httr jsonlite purrr readr yaml]; }; friends = derive2 { name="friends"; version="0.1.0"; sha256="164p9g07vq3xs2lgg250yvzca4b0mp81pqbnjfdkzcqh5hmahsan"; depends=[tibble]; }; - fritools = derive2 { name="fritools"; version="3.3.0"; sha256="1qicnsyy5r25n2y307941j85j8x6qdy66awhz72jmyvrnhghmhac"; depends=[]; }; + fritools = derive2 { name="fritools"; version="3.4.0"; sha256="0kqqffbs2yhy4m0gjq8wcl02vp4jkd9lwdgiqwnj5a4inf6m610f"; depends=[]; }; frm = derive2 { name="frm"; version="1.2.2"; sha256="1dl0vca9r2dams99sc13pfpi0b3yb02x59f4c1jz07zz005c8l23"; depends=[]; }; frmhet = derive2 { name="frmhet"; version="1.1.3"; sha256="07sgsfhzrci8g1b0gicjfca1mgd8ppfqpkpp4q9bdxnjvdvlf45s"; depends=[]; }; frmpd = derive2 { name="frmpd"; version="1.1.0"; sha256="0irgqdr0vr8k408lsxcrjkjbjvqvmy5mnjw9c1ghs86isrp5mciz"; depends=[]; }; @@ -9670,16 +9433,15 @@ in with self; { fromo = derive2 { name="fromo"; version="0.2.1"; sha256="0srq13j0xqbyrmm8n93b5qwc25nz921z45yf467d7gfhxsbgy3hm"; depends=[Rcpp]; }; frontier = derive2 { name="frontier"; version="1.1-8"; sha256="1qhasynm23yihmhb4d7w72msq2z1xf4xnzrkah3z8jv11yxhg1i2"; depends=[Formula lmtest micEcon miscTools moments plm]; }; frontiles = derive2 { name="frontiles"; version="1.2"; sha256="08qq25wbylvhvmq34wggyj0hwdlxfs9rfs8gjqsrg50xccchniqi"; depends=[classInt colorspace rgl sp]; }; - frost = derive2 { name="frost"; version="0.0.4"; sha256="03snjlq4b9j84v0yimc3xzgjvryzzi76b9n53k0s2lvv1yzrri7x"; depends=[]; }; frostr = derive2 { name="frostr"; version="0.2.0"; sha256="1bsgdskdbyryq7jvhnb4z4xb1m5vadqv00qjlkgp41xh71wp2brs"; depends=[httr jsonlite tibble tidyr]; }; frscore = derive2 { name="frscore"; version="0.1.1"; sha256="0x5hyjh3n28yanpgx4yb2afjlwknaa4dd5fsy857hbdm0wf2jz9v"; depends=[cna dplyr magrittr Rfast rlang]; }; fruclimadapt = derive2 { name="fruclimadapt"; version="0.4.4"; sha256="19siwjjcjh0kh2wpbabgzjwrfgg2al0g7d4z91wdcp3spwx308vk"; depends=[data_table lubridate tidyverse zoo]; }; fs = derive2 { name="fs"; version="1.5.2"; sha256="11qr3v0xn65vfhgcxl4l6yv48s4w0w3ldp3anpzc25vd3mwd3jim"; depends=[]; }; + fsMTS = derive2 { name="fsMTS"; version="0.1.7"; sha256="18sikbvl6cwsgr5vqxnx3lmpp2mlx22ca16zxddj87z7jfr1fhgn"; depends=[freqdom glasso lars mpmi randomForestSRC]; }; fsbrain = derive2 { name="fsbrain"; version="0.5.3"; sha256="10xfc6b9wwadafqr8ndz9rkbi94ql4kywpb085b5k5yncmfcbq5m"; depends=[data_table fields freesurferformats magick pkgfilecache reshape rgl squash viridis]; }; fscaret = derive2 { name="fscaret"; version="0.9.4.4"; sha256="18fhyfl3f8syyc3g937qx87dmwbv7dray6b97p1s6lnssiv61gsw"; depends=[caret gsubfn hmeasure]; }; - fsdaR = derive2 { name="fsdaR"; version="0.6-5"; sha256="0j6nvlp527b4g36jg6mcq8w2mc8p795q68d11yi41fvlcw7v6vym"; depends=[ggplot2 rJava rrcov]; }; + fsdaR = derive2 { name="fsdaR"; version="0.7-0"; sha256="1clwn597cjnxmjbl95i9y54blfn0i8s2x4bkzy2b92zwcfq0y8a2"; depends=[ggplot2 rJava]; }; fsia = derive2 { name="fsia"; version="1.1.1"; sha256="0id7cnswrqylgpwjil1zfn89ryrdpl20fim8x1srl8s1hm5bg35r"; depends=[]; }; - fslr = derive2 { name="fslr"; version="2.24.1"; sha256="1psjqvjv8krlkj7dcfwygz563a4cpn7h21z330hxh5q10rwhabi8"; depends=[neurobase oro_nifti R_utils]; }; fsn = derive2 { name="fsn"; version="0.2"; sha256="12n1v8nhfn5pjjsrp41wk848yw797wxa9anx9dm8rd278smrk01f"; depends=[Rfast]; }; fso = derive2 { name="fso"; version="2.1-1"; sha256="0hn2ypm0nwfbmnh9il78pi30x7gfmayfangqyh0d63ngyz40bvma"; depends=[labdsv]; }; fspe = derive2 { name="fspe"; version="0.1.0"; sha256="0cdl6749nqz2nmknn8mjxxxm8axix9iv2micviwg7fhynqhsffp1"; depends=[corpcor GPArotation psych]; }; @@ -9689,9 +9451,8 @@ in with self; { fstcore = derive2 { name="fstcore"; version="0.9.12"; sha256="1a5m68n2dqhi3r8wf5jwg4vjvl550c7wypcf5j0xmkvl836yg1lg"; depends=[Rcpp]; }; fsthet = derive2 { name="fsthet"; version="1.0.1"; sha256="0z6az1jcvdahgn97r6cpj1s6fn0lvr7j12gcw2r7wbpajrvyl5j6"; depends=[]; }; ftDK = derive2 { name="ftDK"; version="1.0"; sha256="1xs2rr2afjza97kpym5zkas3k78pilxjlh7lp1gc66banldr71g2"; depends=[dplyr httr pbapply purrr tibble]; }; - ftExtra = derive2 { name="ftExtra"; version="0.3.0"; sha256="1aal3cwdp9gnc0gnigk7789rak3s6i5jav01d9z25gm977683b76"; depends=[dplyr flextable jsonlite magrittr purrr rlang rmarkdown stringr tibble tidyr tidyselect vctrs xfun yaml]; }; + ftExtra = derive2 { name="ftExtra"; version="0.4.0"; sha256="10z9zqlzjzr7qpjphqgjikc4cnim4grphkwc941ghn3mwisc10l5"; depends=[dplyr flextable jsonlite magrittr purrr rlang rmarkdown stringr tibble tidyr tidyselect vctrs xfun yaml]; }; ftrCOOL = derive2 { name="ftrCOOL"; version="2.0.0"; sha256="0jy0dhkf7hlrriz32abp0h52fw92i5k8x25bjqlzd0khyv2vhj0i"; depends=[]; }; - fts = derive2 { name="fts"; version="0.9.9.2"; sha256="08pwhi19db173d4nsk5rl8xa8qmaddj4bn3cjxb8ql4kny59i57q"; depends=[BH zoo]; }; ftsa = derive2 { name="ftsa"; version="6.1"; sha256="0j8jr0sbvxfzqfy8va7axljp660jkpqwg9djbis9ikf4x9n9f7n9"; depends=[boot colorspace e1071 ecp evgam fda fdapace fGarch forecast glue KernSmooth LaplacesDemon MASS pcaPP pdfCluster psych rainbow ROOPSD sde strucchange vars]; }; ftsspec = derive2 { name="ftsspec"; version="1.0.0"; sha256="12f9yws1r26i240ijq0xqprl3pgbw50wv68jsm75ycplbs2jsyhs"; depends=[sna]; }; fuel = derive2 { name="fuel"; version="1.2.0"; sha256="0pzb77g6l8cz5p7y6czck23kp7hs5zp78k87b5yh0avjlr7ads74"; depends=[]; }; @@ -9705,16 +9466,16 @@ in with self; { funFEM = derive2 { name="funFEM"; version="1.2"; sha256="17pw743qnljwasj4cg8m8sg9j6piy7g69jr57aqmbizlfdqvvl05"; depends=[elasticnet fda MASS]; }; funGp = derive2 { name="funGp"; version="0.2.2"; sha256="1khdnxr7gsswv0v867anh12ah7whqmv9q9i06w1axv13jrriwbac"; depends=[doFuture foreach future knitr microbenchmark progressr qdapRegex scales]; }; funHDDC = derive2 { name="funHDDC"; version="2.3.1"; sha256="1fd3n3y5icm2lcdz5jzfybbbmmzbbgq949x1g4bx4s0h0dnc0rkk"; depends=[fda MASS]; }; - funLBM = derive2 { name="funLBM"; version="2.2"; sha256="0krv0cid34rgcik0hk1fhvsi3cbc19scgsnssczfb0c79jkxy3cw"; depends=[abind fda funFEM ggplot2]; }; + funLBM = derive2 { name="funLBM"; version="2.3"; sha256="0aa9h6nbxbvd6iq4q00rndhvb6sq79lpdgr3zwz0lcgjx6p56s5g"; depends=[abind fda funFEM ggplot2]; }; funModeling = derive2 { name="funModeling"; version="1.9.4"; sha256="1zhmazw77phcdwj9wwxpwjfhwd8wyjc538acqiwq9f6sz8fw1cbb"; depends=[cli dplyr entropy ggplot2 gridExtra Hmisc lazyeval moments pander RColorBrewer reshape2 ROCR scales stringr]; }; func2vis = derive2 { name="func2vis"; version="1.0-1"; sha256="1d2dy7icrgp47szmizhk9x5azsynsv1qp6igxia2mlzkfbk27ffz"; depends=[devtools ggplot2 ggrepel igraph]; }; funcharts = derive2 { name="funcharts"; version="1.1.0"; sha256="0pxx8i6pbqyhsi5gg3mvll9vrcz8lpn6znqa3ixab3z156lgzxfz"; depends=[dplyr fda ggplot2 patchwork rlang RSpectra tidyr]; }; - funchir = derive2 { name="funchir"; version="0.2.0"; sha256="1rj5khv1xcaaip5xh8kcsp2jgmbmnc9q5kwr46l4mxvxyndndi1k"; depends=[data_table]; }; + funchir = derive2 { name="funchir"; version="0.2.2"; sha256="1a5nwqnnv0bn2wrw4lbnwbxkb9xr273sq8m8lnv8wy7wzfyfjaxz"; depends=[data_table]; }; functClust = derive2 { name="functClust"; version="0.1.6"; sha256="0mdfxvrx3wk497a9bbkwnzbm6hm2s4wqs3h09m3hj48ybpqmhz9i"; depends=[clusterCrit multcompView]; }; functional = derive2 { name="functional"; version="0.6"; sha256="120qq9apg6bf39n9vnp68db5rdhwvnj2vi12a8j8243vq8kqxdqr"; depends=[]; }; functiondepends = derive2 { name="functiondepends"; version="0.2.3"; sha256="0p831i8l81dbrncmr69024gm5g14p0xiv7li0ljdlqnrbc0fj64n"; depends=[dplyr magrittr purrr stringr tibble tidyr tidyselect]; }; fundiversity = derive2 { name="fundiversity"; version="0.2.1"; sha256="11gz1h7mlb0880w3cv5sb4h6qpfs6az3vfhd3527s6sw43n87l29"; depends=[future_apply geometry Matrix vegan]; }; - fungible = derive2 { name="fungible"; version="2.0"; sha256="1xwmw6d3lzq4b2n8amhllciq28x85wrcmd7mpxml3zn9las19wrx"; depends=[clue GPArotation lattice MASS mvtnorm nleqslv Rcsdp RSpectra]; }; + fungible = derive2 { name="fungible"; version="2.2"; sha256="1v29s486dnpva01x1qg6has9i11bgyz98kg4l10r4g23scbayf4n"; depends=[clue CVXR DEoptim GPArotation lattice MASS mvtnorm nleqslv Rcsdp RSpectra]; }; funique = derive2 { name="funique"; version="0.0.1"; sha256="0p9k4nxjns1xid9vmslkaap0hm6yq6pbyvylgygd808if4q1z8k6"; depends=[]; }; funmediation = derive2 { name="funmediation"; version="1.0.1"; sha256="1h4jic73f7ywk2g1mkg188q0bq6x8sn9sm7jhr8gvrnmh167ajw7"; depends=[boot refund tvem]; }; funnelR = derive2 { name="funnelR"; version="0.1.0"; sha256="143lb048krgh8rkkz6sm8h464kdy62w29fvvyar795vqi10bb5fy"; depends=[ggplot2]; }; @@ -9724,9 +9485,9 @@ in with self; { funrar = derive2 { name="funrar"; version="1.4.1"; sha256="0xqccch59f8cz4a7ybjdr6k625bir5nsjrp4iyfirrb877d17m5z"; depends=[cluster]; }; funreg = derive2 { name="funreg"; version="1.2.2"; sha256="0dagzz5pl16l2jkkj11z41y68s75jxmyl46csda6vzlgjc7n4ji8"; depends=[MASS mgcv mvtnorm]; }; funtimes = derive2 { name="funtimes"; version="8.2"; sha256="15fhqjagarzfd1zicl684rlcy0rcifpl4wl1fs645nr8lq4y9ygg"; depends=[dbscan FNN igraph Jmisc Kendall Rdpack]; }; - furniture = derive2 { name="furniture"; version="1.9.10"; sha256="02dqs0b0vpn2chqhjylanq9xdrj2hw7ynd6xv94gkfk8syz3dqda"; depends=[dplyr knitr]; }; - furrr = derive2 { name="furrr"; version="0.2.3"; sha256="001p2yhznrpnrjvdcmf2h3wpgdnw01wnqgid7wbq8bhavhi3888a"; depends=[ellipsis future globals lifecycle purrr rlang vctrs]; }; - fusen = derive2 { name="fusen"; version="0.3.0"; sha256="11rsk5yzdzdak24knpxp38p83j0qhbhqc5skfvpmdwncyzf6fv5r"; depends=[attachment cli desc devtools glue here magrittr parsermd roxygen2 stringr tibble tidyr usethis]; }; + furniture = derive2 { name="furniture"; version="1.9.12"; sha256="0akydlxq7my4xfrh6mjgm2i91h215lhbwmxxbjf0fr537yqxjrmd"; depends=[dplyr knitr]; }; + furrr = derive2 { name="furrr"; version="0.3.0"; sha256="117xj66l14r08macwghgyibzm282ljv1afpa133h952gc70irs9z"; depends=[future globals lifecycle purrr rlang vctrs]; }; + fusen = derive2 { name="fusen"; version="0.4.0"; sha256="0x2kz10i9sld5bm042q3ap5vl81svvabnfhp761nx5qc0q0iw65c"; depends=[attachment cli desc devtools glue here magrittr parsermd roxygen2 stringi tibble tidyr usethis]; }; fuser = derive2 { name="fuser"; version="1.0.1"; sha256="17lsfpd9hdichj3wflac896zyjbq7a8w2gmlgj8nbgg80f646fgr"; depends=[glmnet irlba Matrix Rcpp RcppEigen RSpectra]; }; fusionchartsR = derive2 { name="fusionchartsR"; version="0.0.3"; sha256="09l5kckgkp2l0zvfnqhbzy65bi23aavas9m74nddhjh6di8xndh8"; depends=[htmlwidgets jsonlite magrittr shiny]; }; fusionclust = derive2 { name="fusionclust"; version="1.0.0"; sha256="1h03nlk4gnz4j5h2h5bxazkka2qq983h7nglm1ghzqvbqjk6sv37"; depends=[bbmle]; }; @@ -9734,28 +9495,27 @@ in with self; { futile_options = derive2 { name="futile.options"; version="1.0.1"; sha256="0w15agpi88y3qkv6fl72zy2pzyplzgvnj41a4ixhg64mw1sck73s"; depends=[]; }; futile_paradigm = derive2 { name="futile.paradigm"; version="2.0.4"; sha256="14xsp1mgwhsawwmswqq81bv6jfz2z6ilr6pmnkx8cblyrl2nwh0v"; depends=[futile_options RUnit]; }; futility = derive2 { name="futility"; version="0.4"; sha256="0zjb87brz7pkx3nq3q30y69cmcxpqqsra447p60qh7005kgr9vx4"; depends=[]; }; - future = derive2 { name="future"; version="1.24.0"; sha256="0xmj17fq9paww796490bmakv6pcvrzk15i8mzhxk1mp9l0mj32vv"; depends=[digest globals listenv parallelly]; }; - future_apply = derive2 { name="future.apply"; version="1.8.1"; sha256="1ix61bfbk43pwnjb0wk8lkfgdsy5zi8svk74gar5nrl90b5w6nqd"; depends=[future globals]; }; + future = derive2 { name="future"; version="1.25.0"; sha256="0iqqhbf2yxd263wrxqqfaiaq4i0ag6p9w8g8jbs0npxl1z72w96n"; depends=[digest globals listenv parallelly]; }; + future_apply = derive2 { name="future.apply"; version="1.9.0"; sha256="1xb7qj8izjwmy4aa92p5f4cdbhgp220hrly3b5879f9hrv2w2rk1"; depends=[future globals]; }; future_batchtools = derive2 { name="future.batchtools"; version="0.10.0"; sha256="1ly98h2g7wpfxp2r8vl1hy7wqqgwgawjagz0m2iczjmcj4ix6avk"; depends=[batchtools future]; }; future_callr = derive2 { name="future.callr"; version="0.8.0"; sha256="1nhkmxaaii647gizrxa8zj1iakivml7zrqi4bvvs5yshc7m9slg9"; depends=[callr future]; }; future_tests = derive2 { name="future.tests"; version="0.3.0"; sha256="1ssr0sd9h10151m5iaad17zqii7d18nnszq2svj0i8izk83xhrik"; depends=[cli crayon future prettyunits sessioninfo]; }; futureheatwaves = derive2 { name="futureheatwaves"; version="1.0.3"; sha256="122b2z86bzxfch67y6cpq8wj62mw0dgkzbmnpwi247kdx7w5mw1f"; depends=[data_table dplyr ggplot2 ggthemes leaflet Rcpp stringr tidyr]; }; fuzzr = derive2 { name="fuzzr"; version="0.2.2"; sha256="1cwq7a5j6lzrlz9dw3hsfap988rh1kkgf03yni7c33zl69xp5w77"; depends=[assertthat progress purrr]; }; fuzzyRankTests = derive2 { name="fuzzyRankTests"; version="0.4"; sha256="04841fh4nf7qriqk0b2ny943bji60bj42j8czg056d2dza4q4039"; depends=[]; }; - fuzzySim = derive2 { name="fuzzySim"; version="3.7"; sha256="0m37fgqiy025db5ciz8lb2a8132iprn6fssy1bpingw3nb88r3vp"; depends=[modEvA]; }; + fuzzySim = derive2 { name="fuzzySim"; version="4.0"; sha256="1fib1k4ximqi8qp0lp43qll5fg3f8l9d0xjvmp5pa0zq2li8jlc0"; depends=[modEvA]; }; fuzzyforest = derive2 { name="fuzzyforest"; version="1.0.8"; sha256="0sb7qia01a5h6p12riq6vdq9likmqb6i949axsxszy5sf1zk50v5"; depends=[doParallel foreach ggplot2 mvtnorm randomForest]; }; fuzzyjoin = derive2 { name="fuzzyjoin"; version="0.1.6"; sha256="0s5rhqz8vih4za3a8k1k7i3gq8hj0w7bqnakw40k6mg87jvyzsj7"; depends=[dplyr geosphere purrr stringdist stringr tibble tidyr]; }; fuzzyreg = derive2 { name="fuzzyreg"; version="0.6"; sha256="1v100flbnw3mjmakgswj0zfla2rm0s0vpg8w8v7j1lr9sfjz4s7c"; depends=[limSolve quadprog]; }; fuzzywuzzyR = derive2 { name="fuzzywuzzyR"; version="1.0.5"; sha256="1g73xivxyh5fvppccgnxhgar6jsl6zsr2djkg0bhh10i633l56ia"; depends=[R6 reticulate]; }; fwi_fbp = derive2 { name="fwi.fbp"; version="1.7"; sha256="1wk9cr0kk6zkbf111bv87n7b1wwx1qrsbjxydvbjvy8bgz0nfa62"; depends=[]; }; - fwildclusterboot = derive2 { name="fwildclusterboot"; version="0.7"; sha256="1rhaisq2x9skhlils9iry7x8xzsi59pp6i9whg6jrjphgz96976f"; depends=[collapse dqrng dreamerr Formula generics gtools Matrix Matrix_utils Rcpp RcppEigen]; }; + fwildclusterboot = derive2 { name="fwildclusterboot"; version="0.8"; sha256="0cvrf5pynlgbqv1dla10idggkndxyr1bj8achzbbj6w711nk80w3"; depends=[collapse dqrng dreamerr Formula generics gtools JuliaConnectoR Matrix Matrix_utils Rcpp RcppArmadillo RcppEigen]; }; fwsim = derive2 { name="fwsim"; version="0.3.4"; sha256="0fy87c1x5hihfcppv1pvk3b0pwl6ygqpka40x55gbpkgssdigb1l"; depends=[Rcpp]; }; fxTWAPLS = derive2 { name="fxTWAPLS"; version="0.1.0"; sha256="0p51b907sz8357yb5kpxjpip7fa6xznlw1k508jlmkp2dlwnpjpr"; depends=[doFuture foreach future geosphere ggplot2 JOPS MASS progressr]; }; fxregime = derive2 { name="fxregime"; version="1.0-4"; sha256="0ml1q0xp90jfng6a60pfkp6j7wajk6pz4p4wm08rfqikgsdvp0m4"; depends=[car sandwich strucchange zoo]; }; fy = derive2 { name="fy"; version="0.3.0"; sha256="13803ld4b59ly5h3zlianag9901jyw6p70bsyz5dj7k62hg7ha3s"; depends=[data_table fastmatch hutils]; }; g_data = derive2 { name="g.data"; version="2.4"; sha256="14a4m0v38p3j1k1kymkxwydlgm8b73hlx9m80sg1l4aj38fvflzl"; depends=[]; }; g2f = derive2 { name="g2f"; version="0.2"; sha256="1jsmiv6v8ilpxg1k1npcgqa467hpyw7mzh5m8dp7bxar4j5npsp4"; depends=[KEGGREST minval sybil]; }; - g3viz = derive2 { name="g3viz"; version="1.1.4"; sha256="06wapd6vw72gc9i0raymd0l61l9qld967jxq5wjawpy8qrl3z6gk"; depends=[cgdsr htmlwidgets jsonlite stringr]; }; gCat = derive2 { name="gCat"; version="0.1"; sha256="10990ilsjk52kqkcdngj4nq0kcbn4w1syxl1mqjq2n5g1l002yjy"; depends=[]; }; gDefrag = derive2 { name="gDefrag"; version="0.3"; sha256="016vpj03drygxsa06jin225rfgjvjm938x65990ms15xcwrgv8nb"; depends=[igraph maptools rgdal rgeos sp]; }; gIPFrm = derive2 { name="gIPFrm"; version="3.1"; sha256="08rfdac442picbw1r3xyxjzf2dc57svg44am0714z4r72mshvj04"; depends=[]; }; @@ -9766,10 +9526,10 @@ in with self; { gMWT = derive2 { name="gMWT"; version="1.1.1"; sha256="1vbw548fyrf012ry54p3gybdsil8c9llg2r9njhsiy7rb0gz2613"; depends=[clinfun Rcpp RcppArmadillo]; }; gPdtest = derive2 { name="gPdtest"; version="0.4"; sha256="00dlhnklfg2yp4hp7yjgr2nfswv22c007xq1mxdbkll62zgd94mq"; depends=[]; }; gProfileR = derive2 { name="gProfileR"; version="0.7.0"; sha256="1h1v0kgpsn04ald2izznh7fr2riwisj5hcgz4k7h3qc931rf0r4k"; depends=[plyr RCurl]; }; - gRain = derive2 { name="gRain"; version="1.3.9"; sha256="00xqb6jwxqfda7ir218xz944rmzcxsnccc0is00lljlsdfy290wr"; depends=[graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; - gRapfa = derive2 { name="gRapfa"; version="1.0"; sha256="07yzwzna9pdyzndxk6wwyl6v3gkfc7dvy1ixmdl3d38mcl1ahwyq"; depends=[igraph]; }; + gRain = derive2 { name="gRain"; version="1.3.10"; sha256="1bvi2w2grxnqi70sy0x51xrgb9jwd2hr1iasz8z2y5qjbwf4dbg5"; depends=[graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; gRbase = derive2 { name="gRbase"; version="1.8.7"; sha256="027qk7mcw6jyzkfjx15s5aj36drnbwl88wzh2d72phls08dpxmq1"; depends=[BiocManager graph igraph magrittr Matrix RBGL Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; gRc = derive2 { name="gRc"; version="0.4.4"; sha256="0p1m816al9djv5fhzgsgrbbbcpx5c5wjxvxwni6gs2cwxbxmdvcp"; depends=[gRbase magrittr MASS Rcpp RcppArmadillo]; }; + gRim = derive2 { name="gRim"; version="0.2.9"; sha256="1c7b0v8bcns3x5k9bh8pha5x5vzvkh1nj3zl7r7cm2lr79bq856r"; depends=[gRain graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen Rgraphviz]; }; gSEM = derive2 { name="gSEM"; version="0.4.3.4"; sha256="18kh41ibvfflz59gykiq7j2c6a72i8b0w8c2mcprd1nzhnyhvmhy"; depends=[DiagrammeR htmlwidgets knitr MASS]; }; gSeg = derive2 { name="gSeg"; version="1.0"; sha256="0lixlirisnxk29zlrragi3l8j1abb5cl7zh6vhx7l5hjdvh8ldq9"; depends=[]; }; gStream = derive2 { name="gStream"; version="0.2.0"; sha256="1f4xnbavm99yhjmaahazigps41mqlfvvl29kf4fs1yjqr531y36b"; depends=[]; }; @@ -9792,14 +9552,15 @@ in with self; { gamair = derive2 { name="gamair"; version="1.0-2"; sha256="1cjrd576l9md1jb1fc1y6iay5y49i0d8by024qsc7yik6f6mdl13"; depends=[]; }; gambin = derive2 { name="gambin"; version="2.5.0"; sha256="137z6dxrvf05ss9bqh96bsl8rm6gzpk7kdgnfqh355mn0m5h2zx6"; depends=[doParallel foreach gtools]; }; gamblers_ruin_gameplay = derive2 { name="gamblers.ruin.gameplay"; version="4.0.5"; sha256="0h5sfjs2lzs3cfx7q0agq68x4hhqmkiqga04c1gvnzwn8k7i8svc"; depends=[gganimate ggplot2 hrbrthemes viridis]; }; - gamboostMSM = derive2 { name="gamboostMSM"; version="1.1.87"; sha256="0if0x92lch57ksll8d5i3jzk0kh40593b20c17g3hvc33920c7r0"; depends=[mboost]; }; + gamboostLSS = derive2 { name="gamboostLSS"; version="2.0-6"; sha256="0hzkaaiqqzpdxvj78q92wazg6k9wyah2gihbdlzhvf6rnnvg6jss"; depends=[mboost stabs]; }; + gamboostMSM = derive2 { name="gamboostMSM"; version="1.1.88"; sha256="16khm2fpsb3ivfszrilxbrzc8a281vmd1q36dcn50xbkvn19syxg"; depends=[mboost]; }; gamclass = derive2 { name="gamclass"; version="0.62.3"; sha256="0i2nynl4b46rdl8f2zashcg0dvlhcq9paq8hx5y40xpxm8iljqab"; depends=[lattice latticeExtra randomForest rpart]; }; - gameR = derive2 { name="gameR"; version="0.0.1"; sha256="15bzap2f80mrqklxlyy97nq452vy88l93bp8h4arqrzvhj7pjyqq"; depends=[]; }; + gameR = derive2 { name="gameR"; version="0.0.2"; sha256="15n9y6pwdbsg41w3q6syrs5g5vwxp5i0yfk8ga6yzaxkc90pysp1"; depends=[]; }; gameofthrones = derive2 { name="gameofthrones"; version="1.0.2"; sha256="10ns4yl1s8adlf334gl8yararj1fpxbg3gy7h69s554m4h878awk"; depends=[ggplot2 gridExtra MASS]; }; games = derive2 { name="games"; version="1.1.2"; sha256="01hbbr2hsxi5j9axpdl0jihpd55pa9hacjxmab8p7cixk3xqqqbf"; depends=[Formula MASS maxLik stringr]; }; gamesGA = derive2 { name="gamesGA"; version="1.1.3.7"; sha256="0km0z2haqgykl01xkzsbkpwibavgqfjygx7cg08ni68gw501689l"; depends=[shiny]; }; gamlr = derive2 { name="gamlr"; version="1.13-7"; sha256="0p0q77lkb5j9p1gd2z1n74pphx7h0lynzdamxrhz2w6bif1431wz"; depends=[Matrix]; }; - gamlss = derive2 { name="gamlss"; version="5.4-1"; sha256="0fp9bmgykpqd950bk58dk423iy5r1fm3dy2gw0cwwmgivpq2lx0q"; depends=[gamlss_data gamlss_dist MASS nlme survival]; }; + gamlss = derive2 { name="gamlss"; version="5.4-3"; sha256="0xih19zqgpjl5qv5j38ana6x29y84shn2jfl2lk4kaw3q7yx86b6"; depends=[gamlss_data gamlss_dist MASS nlme survival]; }; gamlss_add = derive2 { name="gamlss.add"; version="5.1-6"; sha256="0g80bn0nszs2nmka6dypyvqnsgxp7mzhf5nd82n5x4jm3ca3dbdj"; depends=[gamlss gamlss_dist mgcv nnet rpart]; }; gamlss_cens = derive2 { name="gamlss.cens"; version="5.0-1"; sha256="1s83dgifidvc6cbrqirwlvwfzg08mlhmxxiqkbmnsy09i5j9fzd3"; depends=[gamlss gamlss_dist survival]; }; gamlss_countKinf = derive2 { name="gamlss.countKinf"; version="3.5.1"; sha256="1xalp909gxxhyhh4chlr1ssyfhydhw1w3szzbynajji98576zaqv"; depends=[gamlss gamlss_dist]; }; @@ -9816,16 +9577,14 @@ in with self; { gamlss_tr = derive2 { name="gamlss.tr"; version="5.1-7"; sha256="0drimqfy22v3lbb6wclia9dkij2r1r4syz9i74fhn07qxay7b6cg"; depends=[gamlss gamlss_dist]; }; gamlssbssn = derive2 { name="gamlssbssn"; version="0.1.0"; sha256="1l8d4qwmq9dklm9imb3cvlncwa6jygf8kg2j1599h1nfhyyhj2vv"; depends=[gamlss gamlss_dist MASS]; }; gamm4 = derive2 { name="gamm4"; version="0.2-6"; sha256="128c725y9s07c1m9cvd9hgi9hldrymcs5divd8pw7bdjh9jvdiap"; depends=[lme4 Matrix mgcv]; }; - gamm4_test = derive2 { name="gamm4.test"; version="0.1.0"; sha256="0ab6rksr88fsv6whp6cxyshpv5ixmf9lw51cl3rzk870r8q326wg"; depends=[doParallel foreach gamm4 Matrix mgcv plotly RColorBrewer]; }; gammSlice = derive2 { name="gammSlice"; version="2.0-2"; sha256="1klxg1yhmfaz1zjnw1kxl1lm5plkakqh014rpkak2lj8zgf8qnyy"; depends=[KernSmooth lattice mgcv]; }; - gamma = derive2 { name="gamma"; version="1.0.1"; sha256="1m2wxqprfxb51fih5f9l4s0lk42gyglbgvhfxc0cm9n7pn3dhprl"; depends=[ggplot2 IsoplotR rlang rxylib]; }; gamreg = derive2 { name="gamreg"; version="0.3"; sha256="1svrgbb8qdy2hzpq1g38v2lzmlbrn7qljix827biqzwgiajy69gg"; depends=[doParallel foreach glmnet Rcpp RcppArmadillo robustHD]; }; gamsel = derive2 { name="gamsel"; version="1.8-2"; sha256="1w1z2g0njsfv1ah6w3zw4lcgnaxask5mgykb204jzp6hpnc1a6cb"; depends=[foreach mda]; }; gamselBayes = derive2 { name="gamselBayes"; version="1.0-2"; sha256="1dqxc7g529lkdk2lvn3ls4gxij7djs5xycrzlw49wf79pns2s5cc"; depends=[Rcpp RcppArmadillo]; }; ganGenerativeData = derive2 { name="ganGenerativeData"; version="1.3.3"; sha256="07hdvch67c4liqb9f01j3aflivgpzgxdsg16zvvhwbyzch94xmv2"; depends=[Rcpp tensorflow]; }; ganalytics = derive2 { name="ganalytics"; version="0.10.7"; sha256="03jf7325cgg5p6lzcrzzzx0b40vf3l5vhw95lih098kpmlr1zadf"; depends=[assertthat googleAnalyticsR httpuv httr jsonlite lazyeval lubridate plyr R6 rvest scales selectr stringr tibble XML xml2]; }; - gap = derive2 { name="gap"; version="1.2.3-1"; sha256="1rw93dnv3id64al46iybyznnvprv871qa4lnwdx18x8ym66fafil"; depends=[]; }; - gap_datasets = derive2 { name="gap.datasets"; version="0.0.4"; sha256="1zlxm3nh1b1mqb94fq2b7sc7v99m9ywz7bz9lz5bhwblk5fzmjii"; depends=[]; }; + gap = derive2 { name="gap"; version="1.2.3-6"; sha256="08lcqjxqx4j1zi7jl4d9dqbh51850fljfvr5if82ggx3k2m55wqf"; depends=[dplyr gap_datasets ggplot2 plotly]; }; + gap_datasets = derive2 { name="gap.datasets"; version="0.0.5"; sha256="170w271vs24car0xf73h8yv1hrpl83j6mik6mw7cw8p3zqpbb692"; depends=[]; }; gapclosing = derive2 { name="gapclosing"; version="1.0.2"; sha256="1nq7wbl3236rg27hpfrl1f20gg0yrjmddcghmnh0yv5nzl52l798"; depends=[doParallel dplyr forcats foreach ggplot2 glmnet magrittr mgcv ranger tidyr tidyselect]; }; gapfill = derive2 { name="gapfill"; version="0.9.6-1"; sha256="15mrn44v5l4sgxwlyp1rik5mdg7m2s6xxcdigc3sjd1yhxalgw12"; depends=[fields foreach ggplot2 quantreg Rcpp]; }; gapmap = derive2 { name="gapmap"; version="0.1.0"; sha256="04dz7ns7xsa0q0v7sllaqlhk4mis8gvqzr2a1y4fiiqrk7337gmm"; depends=[ggplot2 reshape2]; }; @@ -9838,13 +9597,13 @@ in with self; { gaselect = derive2 { name="gaselect"; version="1.0.11"; sha256="18nrvad7qdrwgdi5a13kp2m26jsfdfdrwhv2azkrhfv285ziwd5q"; depends=[Rcpp RcppArmadillo]; }; gasfluxes = derive2 { name="gasfluxes"; version="0.4-4"; sha256="0gi0zk0h5rw75n6znada0cwa9qzy8higsiiqwgdm3q827j1x8iva"; depends=[AICcmodavg data_table MASS sfsmisc]; }; gasper = derive2 { name="gasper"; version="1.1.1"; sha256="10kl5d8lm2jvqrfk0qliyb3afmk9bhjm5zvs4g31zpa3icbz9r2p"; depends=[ggplot2 Matrix Rcpp RcppArmadillo RSpectra]; }; - gastempt = derive2 { name="gastempt"; version="0.5.4"; sha256="02b35y0sq0piq5p8k5fviymqyqx1c2k793pm7j79xymmpzf8f52r"; depends=[assertthat BH dplyr ggplot2 nlme Rcpp RcppEigen RcppParallel rstan shiny StanHeaders stringr tibble utf8]; }; + gastempt = derive2 { name="gastempt"; version="0.5.5"; sha256="0pz580nhr9hnpzdi59l00jv34jmy5iyh5skbwslq6gzjdw3jgsf4"; depends=[assertthat BH dplyr ggplot2 nlme Rcpp RcppEigen RcppParallel rstan shiny StanHeaders stringr tibble utf8]; }; gaston = derive2 { name="gaston"; version="1.5.7"; sha256="14z94dpln4dvgrv2w7w9ik7h6rpvbf02qhq1hqzx8c2cndzxr21i"; depends=[Rcpp RcppEigen RcppParallel]; }; gateR = derive2 { name="gateR"; version="0.1.10"; sha256="06qzjvd0na5s6pc11lmr45m8ixnsk57in00ca7vivpa182zvdp6p"; depends=[fields lifecycle raster rlang sparr SpatialPack spatstat_geom tibble]; }; gatepoints = derive2 { name="gatepoints"; version="0.1.4"; sha256="0gwyrkxn4xd79cl60xa312k6nz17mdjdiym65dq7s2384fa80wbm"; depends=[]; }; gauseR = derive2 { name="gauseR"; version="1.1"; sha256="0jlbaylglyza6hlf62g3z0n349zlzlhx6g4jwdzg8b2sh4c3c9yn"; depends=[deSolve]; }; gaussDiff = derive2 { name="gaussDiff"; version="1.1"; sha256="0fqjdxp2ibbami75ba16d02dz4rz5sk8mni45di9anydx44g9d45"; depends=[]; }; - gausscov = derive2 { name="gausscov"; version="0.1.6"; sha256="1c7v3a3610fgp4s70f5lsianmnxrg8zylm303xwrb0bdpkvn0bvm"; depends=[]; }; + gausscov = derive2 { name="gausscov"; version="0.1.7"; sha256="0cb73x4nd3hxsfk716l05h52ir827ir8mwrkab5a4cdqc1xyh8vn"; depends=[]; }; gaussfacts = derive2 { name="gaussfacts"; version="0.0.2"; sha256="095x7k7m7sy1gqkbm6wiqn26252dclz62sbnkv6cjvmbdxajl7m9"; depends=[]; }; gaussplotR = derive2 { name="gaussplotR"; version="0.2.5"; sha256="0amkgzgh6764ri30210nhbi3wcll3248fmkpclx010dxc3hllfdx"; depends=[ggplot2 metR rgl viridisLite]; }; gaussquad = derive2 { name="gaussquad"; version="1.0-2"; sha256="0bcvkssmwwngcd4cnv924n9h3c8z1w3x9c9bkwn5jbz9zyv1lfms"; depends=[orthopolynom polynom]; }; @@ -9870,18 +9629,15 @@ in with self; { gcite = derive2 { name="gcite"; version="0.10.1"; sha256="0ljgzzl4yy1in5iz42iqkrsq6da4qx838anwdlvbdy96dyafl4ad"; depends=[data_table httr pbapply rvest tm wordcloud xml2]; }; gclm = derive2 { name="gclm"; version="0.0.1"; sha256="0b1nr8k8m48x78m6fkga11ikkcxyjsjpvqcd1lp6n9n4hv7akmfp"; depends=[]; }; gclus = derive2 { name="gclus"; version="1.3.2"; sha256="1cz0g0i972955hhaji30rx8448x7f3as7z1sww9i5h86ybgirilw"; depends=[cluster]; }; - gcmr = derive2 { name="gcmr"; version="1.0.2"; sha256="0mh542na2byb4aha548lfkzllfnk4rmzcm23jm6642pndvxpnfmj"; depends=[betareg car Formula lmtest nlme sandwich sp]; }; gconsensus = derive2 { name="gconsensus"; version="0.3.1"; sha256="0zray67q5saqs4n3k2v3hm7ly7hpfibvpvlzvqfhbfj98accm7in"; depends=[coda MASS rjags]; }; gcookbook = derive2 { name="gcookbook"; version="2.0"; sha256="11g1q187l4j31b6cdzdx5z3s14z3s09l7ynl36pzzn9j19l8cmrc"; depends=[]; }; - gdalUtilities = derive2 { name="gdalUtilities"; version="1.2.0"; sha256="0nxnw9azlml13a6rqhxjrwq8v7fb2pjcb07dp5r2p5bzyzvldm7a"; depends=[sf]; }; - gdalUtils = derive2 { name="gdalUtils"; version="2.0.3.2"; sha256="0krapdy50nd5dvcdflz39dzxpig3zklng3hgxavqg2nvwazalvsc"; depends=[foreach R_utils raster rgdal sp]; }; + gdalUtilities = derive2 { name="gdalUtilities"; version="1.2.1"; sha256="172a47dcd6virqxg15vanypi2lwkjb4n4k2pkpd75ybv0w6cqpcg"; depends=[sf]; }; gdalcubes = derive2 { name="gdalcubes"; version="0.6.1"; sha256="0hw6q1gc9f23n9fd9h6ljrx3rjyk91x6b5m40c4hyng5xaxwvdhw"; depends=[jsonlite ncdf4 Rcpp]; }; - gdata = derive2 { name="gdata"; version="2.18.0"; sha256="0zwdj7lscgxr8r62ii8hbdh4mb7sa9w4f5nv32zzrxdvymcpya2b"; depends=[gtools]; }; + gdata = derive2 { name="gdata"; version="2.18.0.1"; sha256="1n9jw136kk5ld27qvny7cx2s8l34jdgmzlx40x62mmcqjddksbsy"; depends=[gtools]; }; gde = derive2 { name="gde"; version="0.2.0"; sha256="1xrncdmidzz9dv51bnbcrdh92im0lr97xi4rgb30p5sfxc4axml9"; depends=[data_table dplyr DT ggplot2 httr jsonlite leaflet progress R_utils readr RSQLite shiny shinycssloaders shinyWidgets stringr XML]; }; gdiff = derive2 { name="gdiff"; version="0.2-2"; sha256="0hg9mf3qyg19wwpiv3lz2z1000jw73s2pwb8y8hjgpv69wwsskfi"; depends=[magick pdftools]; }; gdistance = derive2 { name="gdistance"; version="1.3-6"; sha256="093a29yb544gxldwxgkyfc9bhmz3by0pknnj1c666i6gz2rbxjic"; depends=[igraph Matrix raster sp]; }; gdm = derive2 { name="gdm"; version="1.5.0-3"; sha256="1vj38p7l36znha56c9dfm75z8rfpjhpmhzrsp3sqiwpvb650mmk8"; depends=[doParallel foreach pbapply raster Rcpp reshape2 vegan]; }; - gdns = derive2 { name="gdns"; version="0.5.0"; sha256="1bicimkxsyfg9yqaikapwlv8x9xdvsb00fqnfka07i6b63109sxh"; depends=[httr jsonlite magrittr stringi tinytest]; }; gdpc = derive2 { name="gdpc"; version="1.1.2"; sha256="0g1mnxm78n928g7qjf0w7jzfm27z6mvz5p1rm25mxv7wsif5m6s6"; depends=[doParallel foreach Rcpp RcppArmadillo xts zoo]; }; gds = derive2 { name="gds"; version="0.1.1"; sha256="0gwq0k80rnbg4ibz6dz8sk6hqaklrdbv4vzv8zyk74am3aqipn20"; depends=[]; }; gdtools = derive2 { name="gdtools"; version="0.2.4"; sha256="0a1hqg5b484ji4g9dy0zi06wn9w7pk6hiy5ljzc1zgj9mbhlr21j"; depends=[Rcpp systemfonts]; }; @@ -9897,7 +9653,8 @@ in with self; { geesmv = derive2 { name="geesmv"; version="1.3"; sha256="0gm953z8q5cc1adl3d6vj5djg2inc880zfcdl5gd56fnb5gl6h1w"; depends=[gee MASS matrixcalc nlme]; }; geex = derive2 { name="geex"; version="1.0.12"; sha256="0zqfd416wl6inr423xzxrnc0as0yrxfqy7fdjyc39i60kghfqyh3"; depends=[lme4 Matrix numDeriv rootSolve]; }; geigen = derive2 { name="geigen"; version="2.3"; sha256="0blg4w9wjprbax8z6md3285v12ajcjmcrpca52l3kd5qmxlvizy7"; depends=[]; }; - geiger = derive2 { name="geiger"; version="2.0.7"; sha256="15lmgr1slak9sh35gka5wa4fszywdl9d1rqkbb2lpvfp99n7606j"; depends=[ape coda colorspace deSolve digest MASS mvtnorm ncbit phytools Rcpp subplex]; }; + geiger = derive2 { name="geiger"; version="2.0.9"; sha256="0rl05ag0n8ickdgvnjgyk7g6xca18wqdnjgxq8fvl0zbniqwij68"; depends=[ape coda colorspace deSolve digest MASS mvtnorm ncbit phytools Rcpp subplex]; }; + gellipsoid = derive2 { name="gellipsoid"; version="0.7.2"; sha256="00xgh2416k4khhkn3v2grz5l1mlc7rj92bq224hg0sjr9yyd8yij"; depends=[rgl]; }; gelnet = derive2 { name="gelnet"; version="1.2.1"; sha256="10ygdfz9f5xhahlqb2divwvaljhiz8jhsd12wvq0qalx0v1h5j0p"; depends=[]; }; gemlog = derive2 { name="gemlog"; version="0.41"; sha256="16pdhpx21avxjrawj7i47dxzz2wfhabzz5x3nln2pwaz5b147syz"; depends=[signal]; }; gemma2 = derive2 { name="gemma2"; version="0.1.3"; sha256="1l5axji33abrkm2b32ziilhfqssbq4ypv7kimd16fak6xjz50m0k"; depends=[Matrix]; }; @@ -9914,15 +9671,14 @@ in with self; { genasis = derive2 { name="genasis"; version="1.0"; sha256="1r0733cc2hss3f8dp19s1ji55yp72mds7p3x1zvvpiks2r7w712p"; depends=[fitdistrplus Kendall]; }; gencor = derive2 { name="gencor"; version="1.0.0"; sha256="1an1q4bbd5xqyy66wjzalx74iff0iia2sf2f1q9k17vh9zclgz41"; depends=[]; }; gencve = derive2 { name="gencve"; version="0.3"; sha256="00wbmaffm7mbfv3zl6mb24w1df1a8p24girwdh3a522lw3045iwf"; depends=[C50 class e1071 glmnet lars MASS nnet plus randomForest rpart]; }; - gendata = derive2 { name="gendata"; version="1.1"; sha256="1r5bhmfblhk6d31v0byhp4a0pmpri6vk697zmmx9b0hvhda7mllf"; depends=[]; }; + gendata = derive2 { name="gendata"; version="1.2.0"; sha256="1jcyv7qsmms73s4n4833djr20wxaf8n6y0hlx86yjys7nmx2xiqn"; depends=[]; }; gender = derive2 { name="gender"; version="0.6.0"; sha256="18xiaif6iiwjvnjk611sfz7qi5r7mbi73dcrgrkzkjly8zygp42k"; depends=[dplyr httr jsonlite remotes]; }; genderBR = derive2 { name="genderBR"; version="1.1.2"; sha256="19n3d6ps0wswq1bxgfqifq26svqf8q696im14wfglrl731mr0qbm"; depends=[dplyr httr jsonlite magrittr purrr tibble]; }; gendist = derive2 { name="gendist"; version="2.0"; sha256="0rs0sn1sb6j3pk2xncix04a093awlm2nw70g0rjhr7dlzmigspgb"; depends=[]; }; geneExpressionFromGEO = derive2 { name="geneExpressionFromGEO"; version="0.9"; sha256="15dvx2f4nsmw1mgjfpcdcfnx8335fd043xb4hdnqcbjzf9h228bp"; depends=[annotate Biobase BiocManager GEOquery markdown R_utils xml2]; }; geneHummus = derive2 { name="geneHummus"; version="1.0.11"; sha256="1m6yyjsvmn3w87cw4da8js5vi74k5y739gxdx1yscx1n50bc3m34"; depends=[curl dplyr httr rentrez stringr]; }; - geneListPie = derive2 { name="geneListPie"; version="1.0"; sha256="0z2gawfzhm05dafj4zlj6ifmf0dy7p1hrpa59lzxrnrc0wr6laji"; depends=[]; }; geneSignatureFinder = derive2 { name="geneSignatureFinder"; version="2014.02.17"; sha256="1s9jj87wnzzgm9hnws09yhrxdlb6jw56i3ddwznvmh8vpzrspv4h"; depends=[class cluster survival]; }; - genekitr = derive2 { name="genekitr"; version="0.5.3"; sha256="1znbxgfhq652gxl75if0gzk1n7bclacazwjh5vn97cmm78kkm20k"; depends=[clusterProfiler dplyr ggplot2 rlang stringi stringr tibble tidyr VennDiagram]; }; + genekitr = derive2 { name="genekitr"; version="0.6.1"; sha256="138y6ix998l6hgyczj88x2zccqycnixnrjiyrg5jw6y6bmvk7q00"; depends=[clusterProfiler dplyr ggplot2 rlang stringi stringr tibble tidyr VennDiagram]; }; genemodel = derive2 { name="genemodel"; version="1.1.0"; sha256="1x6n6k9ifv2swhyrghvm6fsz5vh85cdik8225175i9msvmkh928n"; depends=[stringr]; }; genepi = derive2 { name="genepi"; version="1.0.1"; sha256="1whhdlq9p8gmygv7464hvfz6dhm65gqq1dqls6hgpmw822zxgbd5"; depends=[]; }; genepop = derive2 { name="genepop"; version="1.1.7"; sha256="0b36nspq3kkad52k0viw1pdsf7h9h5ivi0ix7zg8i0z7vkhnm0cy"; depends=[Rcpp RcppProgress stringr]; }; @@ -9936,7 +9692,7 @@ in with self; { genetics = derive2 { name="genetics"; version="1.3.8.1.3"; sha256="0lljxvz7nc6y2z303icphar2niir0i407w5cyhy2pwspd9gwkwpy"; depends=[combinat gdata gtools MASS mvtnorm]; }; genie = derive2 { name="genie"; version="1.0.5"; sha256="07w6rf4a3d34j7dwz9zcxshg2sk1cd5v59xs3jxph17c9gga0nlq"; depends=[genieclust Rcpp]; }; genieclust = derive2 { name="genieclust"; version="1.0.0"; sha256="1gbbblr5yv686llych5cj9jc8vc57y53qknzld5z51za9aw6azn3"; depends=[Rcpp]; }; - genio = derive2 { name="genio"; version="1.0.25"; sha256="18vgqldk3ng3rpn7wkhhmjzi5nq7lzf2pkynzsg7bqaw120klhbw"; depends=[dplyr Rcpp readr tibble]; }; + genio = derive2 { name="genio"; version="1.1.1"; sha256="0cqn17k4is8lf8yym2h6l7nc51nzpx6br71z4bi12dm4ni0c0k6y"; depends=[dplyr Rcpp readr tibble]; }; genius = derive2 { name="genius"; version="2.2.3"; sha256="03j6yry39nn8bccrnwjx1y36rdw167gjlkzl56g5lqwbrgx26bqy"; depends=[dplyr magrittr purrr reshape2 rlang rvest stringr tibble tidyr tidytext]; }; geniusr = derive2 { name="geniusr"; version="1.2.0"; sha256="04h0a61ngs0cmjf23imx76bm82dzkp4q4j31h3xlic05dx2lvyan"; depends=[curl dplyr httr purrr rvest stringr tibble xml2]; }; genlasso = derive2 { name="genlasso"; version="1.5"; sha256="07f0gqvngiyd3x01qxbqz7xrz10ck1cbypp51ldg8lg8ln1zw76y"; depends=[igraph Matrix]; }; @@ -9948,30 +9704,28 @@ in with self; { genomeplot = derive2 { name="genomeplot"; version="1.0"; sha256="15v01ngxq7kxav1bhw1mvqradrmvwsad5xh9l5skivb5smh9795w"; depends=[ggplot2]; }; genomic_autocorr = derive2 { name="genomic.autocorr"; version="1.0-1"; sha256="1lidrjz1flxw4jvhqdi8y813m7ss4kkvm7bxsdpz60dxxw3204gm"; depends=[data_table magrittr reshape]; }; genomicper = derive2 { name="genomicper"; version="1.7"; sha256="1sran9gjjkrq9yxv4630cyhjhm9w9cggyx3amhcncmyiknz6pa76"; depends=[AnnotationDbi DBI reactome_db]; }; - genotypeR = derive2 { name="genotypeR"; version="0.0.1.8"; sha256="1kwzjn6hrnfizs44cz4a8qa4mdhdzqssc4axx0s6vngmkmsrffig"; depends=[colorspace doBy plyr reshape2 zoo]; }; - genpathmox = derive2 { name="genpathmox"; version="0.7"; sha256="15kghaslkrv47by16wzc4m46gq3zawmbrpl7nk0r3gmqs42sfcw2"; depends=[diagram quantreg]; }; + genpathmox = derive2 { name="genpathmox"; version="0.8"; sha256="00p2y59ff2p1r2jmxh2w9qzf66iy4scxghb9ifrsnj9jhpgiq3xm"; depends=[cSEM diagram]; }; genpwr = derive2 { name="genpwr"; version="1.0.4"; sha256="0cys4zmfq07g99xywqampvmn8g0a6bjjj368d62q5xki2mi9z649"; depends=[ggplot2 MASS nleqslv]; }; genridge = derive2 { name="genridge"; version="0.6.7"; sha256="07mdkkq4j8i5x8d4yfsp2rfpf7gkcgdcsw9b2ng5f7gdnblrw0dr"; depends=[car]; }; genscore = derive2 { name="genscore"; version="1.0.2"; sha256="0i1wg65cpyc7x1h8dbq0i6q8979lw15zhmn7zn1r8gj3nxl7my0b"; depends=[mvtnorm Rdpack stringr tmvtnorm]; }; genset = derive2 { name="genset"; version="0.1.0"; sha256="02zldi136sfnq1i8pwb3b97zd44pjdgnfadk4bqp36wm8x95phwi"; depends=[]; }; gensphere = derive2 { name="gensphere"; version="1.3"; sha256="0cf1xmwi32x3ga9m5k7a93vdwix84ny7wxb74mddmfvb3m1v4c7g"; depends=[geometry mvmesh rgl SimplicialCubature SphericalCubature]; }; genstab = derive2 { name="genstab"; version="1.0.0"; sha256="09kg70v8qj8rbqwk0zm3xg54pmrr26l8n1s9x26s8qrsns0dgz0x"; depends=[]; }; - gensvm = derive2 { name="gensvm"; version="0.1.5"; sha256="1r0f3l6df1sn3vx5sjssx8p35lw100q0qz6v1fckdfw04z53g4im"; depends=[]; }; + gensvm = derive2 { name="gensvm"; version="0.1.6"; sha256="1859sapssbjyxiq4y2irhpp09fbrp1jsc8zsn4l5pfnhjspxlxa4"; depends=[]; }; geoBayes = derive2 { name="geoBayes"; version="0.7.1"; sha256="02ksavydvl9v7fiyxpg0h1s308lc1si29rhpffnqz26jm40bvnvh"; depends=[coda optimx sp]; }; geoFKF = derive2 { name="geoFKF"; version="0.1.0"; sha256="0fapxfckyhgs1lzaviicnrhmjzdlkxfg2ccn46zcrybqq995g9js"; depends=[numDeriv Rcpp RcppArmadillo]; }; geoFourierFDA = derive2 { name="geoFourierFDA"; version="0.1.0"; sha256="1a5ggjyfj5ic9h7fqvy3r7s0i6bmbwk95bf7y3vrmmmj0sxdm1mf"; depends=[magrittr orthopolynom Rcpp RcppArmadillo]; }; geoGAM = derive2 { name="geoGAM"; version="0.1-2"; sha256="0q09pk2npn4hjymklwfrhz2ybmjpcb6kvqkpn9l3a6cdjgk6bkmj"; depends=[grpreg MASS mboost mgcv]; }; - geoR = derive2 { name="geoR"; version="1.8-1"; sha256="1lvgkpvv4a05lsb1dgphpv733lxbpcj7p2bj1yjjbfch8n04f1lr"; depends=[MASS RandomFields sp splancs]; }; geoSAE = derive2 { name="geoSAE"; version="0.1.0"; sha256="16fkai95cqwxkylpk1gddyzja80036ghfb4ps3rz1vbbqzhg01x8"; depends=[MASS nlme]; }; geoTS = derive2 { name="geoTS"; version="0.1.3"; sha256="12v50r2ym3nb21sskq7h4xsk6nzci06l9iync2ny91iwl7c9nrjc"; depends=[doParallel ff foreach iterators raster sp]; }; geocacheR = derive2 { name="geocacheR"; version="0.1.0"; sha256="04ckxmird6n179xvsx50cjdz046igjxxqdnz5pfxi8pdklnky20c"; depends=[dplyr magrittr stringr threewords tibble]; }; geocmeans = derive2 { name="geocmeans"; version="0.2.0"; sha256="1m1wvhrqpr0sav0v3qpj8kymdr52gfcjv18hshd4kaj309qpq8yl"; depends=[dplyr fclust fmsb future_apply ggplot2 leaflet matrixStats plotly progressr raster Rcpp RcppArmadillo Rdpack reldist reshape2 rgdal rgeos shiny sp spdep]; }; geodaData = derive2 { name="geodaData"; version="0.1.0"; sha256="003m5wff0q4fdlg64qispmhj2aw83isxg3ijxwkwhvi33bpwpq4z"; depends=[]; }; - geodata = derive2 { name="geodata"; version="0.3-5"; sha256="0nf2wkj16dn7zp9rwlv4d9hpwsz589g2c9firdmfg6sg7wf488bm"; depends=[terra]; }; + geodata = derive2 { name="geodata"; version="0.4-6"; sha256="04994fg5b0l1w3xar222yb6drfm46pvxl38mvxa8ffj85ywz2348"; depends=[terra]; }; geodetector = derive2 { name="geodetector"; version="1.0-4"; sha256="00zyx68jjl4mldah8mxfvwvv5yfkd4f1s2rlx6fsw6h8y2cwzj3l"; depends=[maptools rgdal rgeos sp]; }; geodimension = derive2 { name="geodimension"; version="1.0.0"; sha256="0mh16cdac7vi8zv98g3s06109fpadan441zd80x9yfsypx75sdz0"; depends=[dplyr generics magrittr pander readr rlang sf tibble tidyr tidyselect]; }; geodist = derive2 { name="geodist"; version="0.0.7"; sha256="07mzxf4ngh34m4830sqnndhbdcvhgarpp46c6hmxsxwky6x5kp5k"; depends=[]; }; - geodiv = derive2 { name="geodiv"; version="1.0.4"; sha256="06jn33j03bnk20489y7r0r7nvk46dprl5zsrm3pgg1py7jk1rv54"; depends=[dplyr e1071 landscapemetrics phonTools pracma raster Rcpp RcppArmadillo rgdal rgeos sf snow sp spatial tibble zoo]; }; + geodiv = derive2 { name="geodiv"; version="1.0.5"; sha256="15aq2pr7j7bbzqlkk13j4xph4r47xq2lcv0rb64b02qnivb77s1m"; depends=[dplyr e1071 landscapemetrics phonTools pracma raster Rcpp RcppArmadillo rgdal rgeos sf snow sp spatial tibble zoo]; }; geodrawr = derive2 { name="geodrawr"; version="2.0.0"; sha256="05irfyfpk5lgsh0wax8dqdyfw4prynxz1bhs9k1nrz8yn2dd0imn"; depends=[leaflet sf shiny shinydashboard]; }; geoelectrics = derive2 { name="geoelectrics"; version="0.2.0"; sha256="1dmpaf16750ni4yr36cglfz9pv9jax8jxb3kwn47kxgnx3l8qq98"; depends=[fields lattice rgl]; }; geofabrik = derive2 { name="geofabrik"; version="0.1.0"; sha256="0k92gmivccw3kbgkb9bjw7pxc4zc3zdj35x0cbzmjq0k3qxq8ad0"; depends=[]; }; @@ -9987,13 +9741,14 @@ in with self; { geojsonsf = derive2 { name="geojsonsf"; version="2.0.2"; sha256="1fj8jazpyjx1qygyasbw58mgl91ahqjdrk8cj9y861c709szs4vd"; depends=[geometries jsonify rapidjsonr Rcpp sfheaders]; }; geoknife = derive2 { name="geoknife"; version="1.6.6"; sha256="0g4aia9v9f76njpjnd0silx7mqapycp2w5akyipwdag9gyizps61"; depends=[curl httr progress sp whisker xml2]; }; geomander = derive2 { name="geomander"; version="2.0.3"; sha256="05qbq6a4cdnaazh0bwi5l523lm8y1ax5zf32pyl34rlqv70450sd"; depends=[censable cli dataverse dplyr geos ggplot2 magrittr Rcpp readr sf stringr tibble tidyr tigris]; }; - geomapdata = derive2 { name="geomapdata"; version="1.0-4"; sha256="1g89msnav87kim32xxbayqcx1v4439x4fsmc8xhlvq4jwlhd5xxw"; depends=[]; }; + geomapdata = derive2 { name="geomapdata"; version="2.0-0"; sha256="0mq7hxyyi1ikwdmh7ns9rnkvp2q5s48441i8msx8621scxdv6ga4"; depends=[]; }; + geomaroc = derive2 { name="geomaroc"; version="0.1.1"; sha256="09j48ms1j7sqakznd2bj6sks1b6ckhch7ydhbdky4jk2acvl7lqw"; depends=[jsonlite sf]; }; geomedb = derive2 { name="geomedb"; version="2.0.1"; sha256="1l35c9x1mhqd7z5ragd7w3ay8v2fdnbmbfx9grwi622j8yz1fbmq"; depends=[ape httr jsonlite]; }; geomerge = derive2 { name="geomerge"; version="0.3.2"; sha256="1i6n88k8icwihr9w7ipjb50f68zad602dipb3hd887y4kyf14wni"; depends=[geosphere ggplot2 gridExtra inlmisc lubridate raster scales sp spdep]; }; geometa = derive2 { name="geometa"; version="0.6-6"; sha256="08029c5gk0rjv1kxqrcw2s6ggh2ql465a92amr474i8cnlgaaqqx"; depends=[httr jsonlite keyring R6 XML]; }; geometr = derive2 { name="geometr"; version="0.2.10"; sha256="00yhw6k9wj3q0mmhwrjvhybsz5fcx86ms5n1q2l492jljplp46cr"; depends=[checkmate crayon deldir dplyr purrr raster Rcpp rgdal rlang sf sp tibble]; }; geometries = derive2 { name="geometries"; version="0.2.0"; sha256="05036q4dccmmd955g4n2s5ncc9zxd9v9qyamszszwn147i7hkxcc"; depends=[Rcpp]; }; - geometry = derive2 { name="geometry"; version="0.4.5"; sha256="1n10l8ax3783v3lgaacb15qsn8b3f0wpmhg3k39j31s6ciyd3vcg"; depends=[linprog lpSolve magic Rcpp RcppProgress]; }; + geometry = derive2 { name="geometry"; version="0.4.6"; sha256="1n7m0djqlhrv01l98r76grkki6cv4k4q2z6c7fksqgq4r2l6a14i"; depends=[linprog lpSolve magic Rcpp RcppProgress]; }; geomorph = derive2 { name="geomorph"; version="4.0.3"; sha256="0qz2hiqpn8sxd5kqvmvr1fx2vl8h70jj4jxcmbjg31gfybnppmwg"; depends=[ape ggplot2 jpeg Matrix rgl RRPP]; }; geomtextpath = derive2 { name="geomtextpath"; version="0.1.0"; sha256="19hxqwzz3vli7f5631njz142ca01b4zfs72g4wwpswm5vkpkizdx"; depends=[ggplot2 rlang scales systemfonts textshaping]; }; geonames = derive2 { name="geonames"; version="0.999"; sha256="0yz1b7y3vwa4izrhpry4n3iwzb7y67s5p3kgnd7d29cl5pcbpmqx"; depends=[rjson]; }; @@ -10001,20 +9756,17 @@ in with self; { geonet = derive2 { name="geonet"; version="0.6.0"; sha256="0zav0r4q8i8mxwnr3a7j2ldprfb979pmcx76ssks4p6cfqp0syj4"; depends=[dplyr ggplot2 igraph Matrix mgcv spatstat_core spatstat_geom spatstat_linnet]; }; geonetwork = derive2 { name="geonetwork"; version="0.4.1"; sha256="04vf39hxl1a2kbgqc054xg9w6hbd3fwag6sy0j8a9agrd5wgks7h"; depends=[geosphere igraph rgdal sf sp]; }; geophys = derive2 { name="geophys"; version="1.4-1"; sha256="1s64sbr0chv0z2vaw059khfkv8iga1kr6428kkglgafq5x2d6h3q"; depends=[cluster GEOmap RFOC RPMG RSEIS]; }; - georob = derive2 { name="georob"; version="0.3-14"; sha256="1an5mxq49kv038dplm9h6ngvsz71lkvjm34i7jjsdpaz3cyflp7v"; depends=[abind constrainedKriging fields lmtest nleqslv nlme quantreg RandomFields robustbase snowfall sp]; }; geos = derive2 { name="geos"; version="0.1.3"; sha256="1adm5wvnxvj6hl1wkgkfl862nxddv2x11x7nnp8xwi0dbjmz0mnf"; depends=[libgeos wk]; }; - geosapi = derive2 { name="geosapi"; version="0.5-1"; sha256="0ny1nzhfwj9l3gyzls3ksikmjzx06a3420nb3l6b2711v9zymv45"; depends=[httr keyring openssl R6 XML]; }; + geosapi = derive2 { name="geosapi"; version="0.6"; sha256="1dn2gjq6m3bfxvr373mch6f3m437m9m9ng8pjl2n19mgz3aa5jgw"; depends=[httr keyring openssl R6 readr XML]; }; geoscale = derive2 { name="geoscale"; version="2.0"; sha256="0gisds0in32xhw54fxfyxvwxgrfjs871wmqf6l915nr896rlx0bm"; depends=[]; }; geosed = derive2 { name="geosed"; version="0.1.1"; sha256="07j4q6sgrf83h2gi2j5qap5rifz8gimdacd3b7ld1p3b6ai6kv3r"; depends=[]; }; geospark = derive2 { name="geospark"; version="0.3.1"; sha256="004axa0k9xg1hra8jihwgnc379k8pib1h0zkr82j0m9sii4wrk6r"; depends=[dbplyr dplyr sparklyr]; }; geosphere = derive2 { name="geosphere"; version="1.5-14"; sha256="0bg4vfmrw140j2ax0p6bflvb77w03ir39wa87l96rj473jpa9hzj"; depends=[sp]; }; geospt = derive2 { name="geospt"; version="1.0-2"; sha256="1814nn0naxvbn0bqfndpmizjbqcs6rm87g2s378axkn6qpii4bh8"; depends=[fields genalg gsl gstat limSolve MASS minqa plyr sgeostat sp TeachingDemos]; }; - geosptdb = derive2 { name="geosptdb"; version="0.5-0"; sha256="0m0dlazhq2za71mi3q8mz2zvz7yrmda7lha02kh9n820bx89v33z"; depends=[FD fields geospt gsl limSolve minqa sp StatMatch]; }; + geosptdb = derive2 { name="geosptdb"; version="1.0-1"; sha256="1n1jvigavcxlbc5wki74lnhax3060i44m1cvkcr664wsjqhx3kl2"; depends=[FD fields geospt gsl limSolve minqa sp StatMatch]; }; geostan = derive2 { name="geostan"; version="0.2.1"; sha256="136y4d5wk0pcsbi0av6k3knjqdw665cb9hv892gdslclqlkni0r4"; depends=[BH ggplot2 gridExtra MASS Matrix Rcpp RcppEigen RcppParallel rstan rstantools sf signs spdep StanHeaders truncnorm]; }; geostats = derive2 { name="geostats"; version="1.4"; sha256="0knxv0jnrpijc6wg46qrrrsjikd37dgrkdp8l2kva18zl4cgh922"; depends=[]; }; - geotech = derive2 { name="geotech"; version="1.0"; sha256="18s7w6h1svc4n1hcgj5njfkf3nflkc53cdwsq5112p3442rlz33f"; depends=[]; }; geotools = derive2 { name="geotools"; version="0.1"; sha256="0d0vf9dvrrv68ivssp58qzaj8vra26ms33my097jmzmgagwy1spd"; depends=[]; }; - geotoolsR = derive2 { name="geotoolsR"; version="1.1"; sha256="162s37j7wh14h91b6acn453bvgpk3cakfi7mgrdvr5bjdqqn7j7v"; depends=[dplyr geoR ggplot2 tidyr]; }; geotopbricks = derive2 { name="geotopbricks"; version="1.5.4"; sha256="1mn15mchxkv9qqjrcsyx0pf56sdz0ba7i5jd1ci1ilr6rig81ckz"; depends=[raster rgdal stringr zoo]; }; geouy = derive2 { name="geouy"; version="0.2.5"; sha256="1l9gnb1rk21sr5vrc8bk2kw28b01ykzh0qagx6yxp2aqr9f2xk3x"; depends=[assertthat curl dplyr fs ggplot2 ggspatial ggthemes glue magrittr raster RCurl rgdal rlang sf sp stringr viridis]; }; geoviz = derive2 { name="geoviz"; version="0.2.2"; sha256="1wx1p72532xpg6y3rlrvaiwx57xad3d9fvy9mbadvj418xwxnmim"; depends=[abind chron curl dplyr ggplot2 glue magrittr png progress purrr raster readr rgdal rgeos rgl rlang sf slippymath sp stringr tibble tidyr]; }; @@ -10044,6 +9796,7 @@ in with self; { gets = derive2 { name="gets"; version="0.35"; sha256="0hk7x2cvqs71dynvla1r6fs2k1v8laqzf7vc8l4w18im82kvmiis"; depends=[zoo]; }; getspres = derive2 { name="getspres"; version="0.2.0"; sha256="190y4qrm1wawp0787zhw3g8h9s2smacvvxbs70pxbhysq4bkzcdd"; depends=[colorRamps colorspace dplyr metafor plotrix RColorBrewer]; }; gettz = derive2 { name="gettz"; version="0.0.4"; sha256="1j83pdny3phfflkdjwiflyfvighn73pysw5bac4hx079dda8k25g"; depends=[]; }; + getwiki = derive2 { name="getwiki"; version="0.9.0"; sha256="1dj91hc65l84yhzdl7i05s7nw0ybgijjs2g2dxgfmsvxnj10fgby"; depends=[jsonlite]; }; gexp = derive2 { name="gexp"; version="1.0-1"; sha256="1i3sarsawax1landjbm8gxrcrimwzdgrbybzipqwxdrmlgvxslqk"; depends=[jpeg mvtnorm png]; }; geysertimes = derive2 { name="geysertimes"; version="0.1.9"; sha256="08d04znd1h4s5vdp5981bzz4rb48lnx2nwwnvcqk84rl6zmc0l97"; depends=[jsonlite lubridate readr]; }; gfboost = derive2 { name="gfboost"; version="0.1.1"; sha256="1flvvqm9rk156nqnd0qwpagjl7kp2r4mkxpmp1i4zdnnyp2cydwk"; depends=[mboost mvtnorm pcaPP]; }; @@ -10053,7 +9806,7 @@ in with self; { gfiUltra = derive2 { name="gfiUltra"; version="1.0.0"; sha256="1n6sp7h0ys92mqixznrs2j8kmban3mx8swrwdpxgxc6vxycky8d8"; depends=[lazyeval mvtnorm SIS]; }; gfilmm = derive2 { name="gfilmm"; version="2.0.4"; sha256="16lcjknamq4zm9aqj36ag1ykg635syl54amfxp04xhanqas505bf"; depends=[forcats lazyeval Matrix Rcpp RcppEigen rgr spatstat spatstat_geom]; }; gfilogisreg = derive2 { name="gfilogisreg"; version="1.0.2"; sha256="1825xaz4xjnhpmfrim6c9sfr50wyvpbmbnzbvvjqrn8d2gwcmim6"; depends=[BH EigenR lazyeval rcdd Rcpp RcppArmadillo roptim spatstat spatstat_geom]; }; - gfoRmula = derive2 { name="gfoRmula"; version="0.3.2"; sha256="1pk1pzwc7zkvz9fjpd6lqymjashd9h5kvxx68v8lqi8ns3c0s477"; depends=[data_table ggplot2 ggpubr nnet progress stringr survival truncnorm truncreg]; }; + gfoRmula = derive2 { name="gfoRmula"; version="1.0.0"; sha256="1y12bgj6r07g8kiysfacxfdvprir8lzbajcsym3lx5wzfg29spcq"; depends=[data_table ggplot2 ggpubr nnet progress stringr survival truncnorm truncreg]; }; gfonts = derive2 { name="gfonts"; version="0.1.3"; sha256="0dbpw93pa3asjddl2f2ih7149mkjfz3kywmz2623mfl0sm1x5g71"; depends=[crayon crul glue htmltools jsonlite shiny]; }; gfpop = derive2 { name="gfpop"; version="1.1.0"; sha256="0kqvna57q8a1ybzj5svw1k5qvnpd9n7c0jg6gyx1y00si3vazd84"; depends=[Rcpp]; }; gg_gap = derive2 { name="gg.gap"; version="1.3"; sha256="0m66050ryn31xmsmmikjsssllasvjdmp9yjbwfdwfpwdv106zn9h"; depends=[cowplot ggplot2]; }; @@ -10069,6 +9822,7 @@ in with self; { ggQC = derive2 { name="ggQC"; version="0.0.31"; sha256="1j9cs97hcj5zmqvn5rjr3gl0b9748s3pv2nb7v66dsyjdwvj7wyy"; depends=[dplyr ggplot2 tidyr]; }; ggQQunif = derive2 { name="ggQQunif"; version="0.1.5"; sha256="0vrxmqxy946mwdq0mb2m1ch41r0chrw7hcn18dr3mp10bv7pl7wj"; depends=[dplyr ggplot2 scales]; }; ggROC = derive2 { name="ggROC"; version="1.0"; sha256="0p9gdy7ia59d5m84z9flz5b03ri7nbigb3fav2v2wrml300d24vn"; depends=[ggplot2]; }; + ggRandomForests = derive2 { name="ggRandomForests"; version="2.2.0"; sha256="1cxmba8qzihdk28pk4r5n8galxydviyvwfmdp4pv4vfw8ymgwprs"; depends=[ggplot2 randomForest randomForestSRC survival tidyr]; }; ggResidpanel = derive2 { name="ggResidpanel"; version="0.3.0"; sha256="1vsjw229pd36100ix1sgfmk5lb9b0fx3l6pxg1irsfhm2ypbg1ig"; depends=[cowplot ggplot2 MASS plotly qqplotr stringr]; }; ggThemeAssist = derive2 { name="ggThemeAssist"; version="0.1.5"; sha256="1biw91a8p13h62v4w3yim6ghr98khmyhb3qd0h04asf91vvmpxbv"; depends=[formatR ggplot2 miniUI rstudioapi shiny]; }; ggTimeSeries = derive2 { name="ggTimeSeries"; version="1.0.2"; sha256="0sd39svwi3ai81szahd49a8qvsydi1922z4q6r2r70fpbfwi4qrq"; depends=[data_table ggplot2]; }; @@ -10082,6 +9836,7 @@ in with self; { ggarchery = derive2 { name="ggarchery"; version="0.2.0"; sha256="1w9dfjvhxrf8alf155jjjhk5380pk1n3asmqayg0rggsq98bj0jh"; depends=[ggplot2 glue purrr rlang tidyverse]; }; ggasym = derive2 { name="ggasym"; version="0.1.6"; sha256="1vgsqq2m4w5clmf27mmj6jqn2s8m1izz3gj2bxqpmdcvzf5vxkgr"; depends=[dplyr ggplot2 magrittr purrr rlang scales stringr tibble tidyr]; }; ggbeeswarm = derive2 { name="ggbeeswarm"; version="0.6.0"; sha256="0crk29p5vi1r3a988kms4y7r0iqwgwzsikgvh18r9wbzyr98bb5v"; depends=[beeswarm ggplot2 vipor]; }; + ggblanket = derive2 { name="ggblanket"; version="1.0.0"; sha256="02wc8240cg3bnyg2qblz79h7qzg0d1piffa804zgpvpp7n2ypigy"; depends=[dplyr forcats ggplot2 lubridate magrittr rlang scales snakecase stringr tidyr tidyselect viridis]; }; ggborderline = derive2 { name="ggborderline"; version="0.1.0"; sha256="02m7g0fmayp0zscj3x167n96cj6kn62a8nw67d42k6p74bard2sy"; depends=[ggplot2 scales]; }; ggbreak = derive2 { name="ggbreak"; version="0.0.9"; sha256="1m93dwdhbibvmhzdk06z9kxdsv435rrs3g2m6lji5pajmf6qf72s"; depends=[aplot ggfun ggplot2 ggplotify rlang]; }; ggbuildr = derive2 { name="ggbuildr"; version="0.1.0"; sha256="0pld635v6fv46ky7s4icwxlcnr7z6bp5ikf20adpkljwhy0wwxak"; depends=[ggplot2 purrr readr]; }; @@ -10102,7 +9857,7 @@ in with self; { gge = derive2 { name="gge"; version="1.7"; sha256="1lis0w4n0fns1fsl95p1pbvbqkb3vlwzb5pk5hqlzadjrnrs6gzw"; depends=[nipals reshape2]; }; ggeasy = derive2 { name="ggeasy"; version="0.1.3"; sha256="0zp9jhm8vc1gpja5s6g92snd1jnskadafc226l51y8cps7lj8f6q"; depends=[ggplot2 rlang]; }; ggedit = derive2 { name="ggedit"; version="0.3.1"; sha256="10fbjqq6l7wfibi65mq423w7v8gymr541if749qhsnd9b2jyhaj5"; depends=[colourpicker dplyr ggplot2 magrittr miniUI plyr purrr rlang rstudioapi scales shiny shinyAce shinyBS tidyr]; }; - ggeffects = derive2 { name="ggeffects"; version="1.1.1"; sha256="0xrb105kblkj3l9zlj9yy52rjlmx5x2aai1wwb5zvjr1f6nlc84l"; depends=[insight MASS sjlabelled]; }; + ggeffects = derive2 { name="ggeffects"; version="1.1.2"; sha256="01yyfw7fkbxrp0gpwni5y8m4w9l3xckwc3crnvy1fqs1d6gwx3xx"; depends=[insight MASS sjlabelled]; }; ggenealogy = derive2 { name="ggenealogy"; version="1.0.1"; sha256="19six9ln1yaqv268abm9qvb61nl8zdz3gghwr8hmwsa94xwhzhkq"; depends=[ggplot2 igraph plotly plyr reshape2 tibble]; }; ggetho = derive2 { name="ggetho"; version="0.3.6"; sha256="1iv0vad8y85bvz8rx0flqyrb38d79j9fhmd6ay5siyccigi88clj"; depends=[behavr data_table ggplot2 labeling rlang scales stringr]; }; ggfacto = derive2 { name="ggfacto"; version="0.2.2"; sha256="0rxqkhmnzpljcdbg5wzmyq5fivd3d2h1903w8d1cblq7xw969xi0"; depends=[dplyr FactoMineR forcats ggiraph ggplot2 ggrepel gridExtra htmlwidgets kableExtra magrittr purrr rlang stringi stringr tabxplor tibble tidyr tidyselect vctrs widgetframe]; }; @@ -10126,7 +9881,7 @@ in with self; { ggheatmap = derive2 { name="ggheatmap"; version="2.1"; sha256="1dks2fmkaaws5v7mgcw6rbvb5nfr7c9mmg0pqwywwx7rxj3gm05q"; depends=[aplot factoextra ggplot2 ggpubr patchwork tibble tidyr]; }; gghighlight = derive2 { name="gghighlight"; version="0.3.2"; sha256="0bxgn4srxz1qhawqa8ck57p8hg5ikwfa9ll03zmnn8fb19akwm2v"; depends=[dplyr ggplot2 ggrepel lifecycle purrr rlang tibble]; }; gghilbertstrings = derive2 { name="gghilbertstrings"; version="0.3.3"; sha256="0b3xp1w6fkkmjh7gihhfkp4npx553a75bvsal3w4j57xa34l8rap"; depends=[dplyr ggplot2 lifecycle magrittr Rcpp rlang tibble]; }; - ggimage = derive2 { name="ggimage"; version="0.3.0"; sha256="0lx5n334f7m6x22lqizl2ry11p9s5wn73mkfz8qfp0nw4af6cja7"; depends=[ggfun ggplot2 ggplotify jsonlite magick scales tibble]; }; + ggimage = derive2 { name="ggimage"; version="0.3.1"; sha256="056pci0wfi0bzvarcnxvi4x4cq013rwjxcr610s6i8pv8p89iihz"; depends=[ggfun ggplot2 ggplotify jsonlite magick scales tibble]; }; ggimg = derive2 { name="ggimg"; version="0.1.1"; sha256="0yc3w5vpwga2qz7mfv7i8fxfhgdbrrkd7mjm0axqd3d2qz466b36"; depends=[abind ggplot2 jpeg png]; }; gginference = derive2 { name="gginference"; version="0.1.3"; sha256="1r960cglnkii8xih4r1r7wd857jqn53f08zi9dnj54bpqrs374zx"; depends=[ggplot2 rlang]; }; gginnards = derive2 { name="gginnards"; version="0.1.0-1"; sha256="1kgyrssmkyaqkahdqbc7abx955iyfls96kfamryhcarvbclkf2jx"; depends=[ggplot2 magrittr rlang stringr tibble]; }; @@ -10136,7 +9891,6 @@ in with self; { ggjoy = derive2 { name="ggjoy"; version="0.4.1"; sha256="012md2m0jqfcccb933j423m3ck31v3p0pd41gjxpyg9082y7ixyj"; depends=[ggplot2 ggridges]; }; gglasso = derive2 { name="gglasso"; version="1.5"; sha256="12l0ac1n54z41yw7c00fm6q2mjmhp9blk4f8vp7q2my2xxwh1fmj"; depends=[]; }; gglm = derive2 { name="gglm"; version="0.1.0"; sha256="12bqqh9614v0cv45czqh6w0in4hbhwmicvcw8l07zdhrn9aq7y9m"; depends=[ggplot2 patchwork rlang]; }; - ggloop = derive2 { name="ggloop"; version="0.1.0"; sha256="0jpbgb16jfsv557zvishln98y7nd6p1ryp6hxkrkmhp9p35vzvc0"; depends=[assertthat ggplot2 lazyeval magrittr plyr]; }; gglorenz = derive2 { name="gglorenz"; version="0.0.2"; sha256="1kag8p2chd0sbn8affpxzi4aawpm71ls97dwdgx7mxxfwkdb2q0y"; depends=[ggplot2 ineq]; }; ggm = derive2 { name="ggm"; version="2.5"; sha256="11wc6k2kj2ydy0dyks5mbvbhxm1r43id87anl1jg6dn0yv4m78di"; depends=[graph igraph]; }; ggmap = derive2 { name="ggmap"; version="3.0.0"; sha256="13dmzl6z62pzjiffilarkji46vy0sacxa8a7mhrhc3biq3ylzhln"; depends=[bitops digest dplyr ggplot2 glue httr jpeg magrittr plyr png purrr RgoogleMaps rjson scales stringr tibble tidyr]; }; @@ -10162,19 +9916,19 @@ in with self; { ggpattern = derive2 { name="ggpattern"; version="0.4.2"; sha256="12xzvdhq2g3h5gggmm6rk7hdjici2kl7wjs98l5yh6yqnbglig74"; depends=[ggplot2 glue gridpattern rlang scales]; }; ggperiodic = derive2 { name="ggperiodic"; version="1.0.1"; sha256="084n37jwldnhqx61ayq9b55bi4dp2iqyrj2qbp67w0ps1xn5jm6b"; depends=[data_table dplyr ggplot2 sticky tidyselect]; }; ggplot_multistats = derive2 { name="ggplot.multistats"; version="1.0.0"; sha256="1afzfa86vc484bcwpg7m1ky03jpax584rigzgai8w06pifkmz0il"; depends=[ggplot2 hexbin rlang scales]; }; - ggplot2 = derive2 { name="ggplot2"; version="3.3.5"; sha256="1si46bf9p09qzs208hqffwcb40305p361whmwhc1pwrsmx7jjxdh"; depends=[digest glue gtable isoband MASS mgcv rlang scales tibble withr]; }; + ggplot2 = derive2 { name="ggplot2"; version="3.3.6"; sha256="1aa377jdfajj8ld2fh159y8havlibsr4pjisf6mkzk8g5awlxjxz"; depends=[digest glue gtable isoband MASS mgcv rlang scales tibble withr]; }; ggplot2movies = derive2 { name="ggplot2movies"; version="0.0.1"; sha256="067ld6djxcpbliv70r2c1pp4z50rvwmn1xbvxfcqdi9s3k9a2v8q"; depends=[]; }; ggplotAssist = derive2 { name="ggplotAssist"; version="0.1.3"; sha256="1g0s1dkbrxmwqjqppagdbnx24s0nbjn09xwxix3dkfssz6drhala"; depends=[dplyr editData gcookbook ggplot2 ggthemes magrittr miniUI moonBook rstudioapi scales shiny shinyAce shinyWidgets stringr tibble tidyverse]; }; ggplotgui = derive2 { name="ggplotgui"; version="1.0.0"; sha256="1yfglg5438mwyml845isimzma5q6824x19jka509ng49bzmf1za0"; depends=[ggplot2 haven plotly RColorBrewer readr readxl shiny stringr]; }; ggplotify = derive2 { name="ggplotify"; version="0.1.0"; sha256="12mk3fa8fdjxj7xxz21jkr7h91w5wdgwjqhszcz1qffwsgb773qp"; depends=[ggplot2 gridGraphics yulab_utils]; }; ggplotlyExtra = derive2 { name="ggplotlyExtra"; version="0.0.1"; sha256="1m2rhylpzj934gb50lxjp47rxz0kwl9i1p3n7w1rz4qi96pr5p1c"; depends=[ggplot2 plotly rlang]; }; - ggpmisc = derive2 { name="ggpmisc"; version="0.4.5"; sha256="036y3zhl9ndj5wlqy2nkp95vi7pjfpvf63ndsigramzad0fz0c98"; depends=[dplyr generics ggplot2 ggpp lmodel2 lubridate MASS plyr polynom quantreg rlang scales splus2R tibble]; }; + ggpmisc = derive2 { name="ggpmisc"; version="0.4.6"; sha256="1iq39rx4nj1lf37hnj4df0c7gbk9374d0mzcnhdr7aqpxaxgs3ys"; depends=[dplyr generics ggplot2 ggpp lmodel2 lubridate MASS plyr polynom quantreg rlang scales splus2R tibble]; }; ggpointdensity = derive2 { name="ggpointdensity"; version="0.1.0"; sha256="0c9a14j3b0hvamqylhzldw2hjdxmfbllwahjkf3gg2rw337ld9iy"; depends=[ggplot2]; }; ggpointless = derive2 { name="ggpointless"; version="0.0.1"; sha256="01w4aa84lrk4lwv2a0jhbia8c60mc9jqp9jplrnvngna17wlq2f1"; depends=[ggplot2]; }; ggpol = derive2 { name="ggpol"; version="0.0.7"; sha256="11xr26kwmkjjb51wm44ydv0vcinc6k6faqwx4s2faj4iwidlys1m"; depends=[dplyr ggplot2 glue gtable plyr rlang tibble]; }; ggpolar = derive2 { name="ggpolar"; version="0.2.0"; sha256="0i795635yziz1qssrvnvpbar5fdp4vxfmzaaxdlw6cccf3qfnnvq"; depends=[ggplot2]; }; ggpolypath = derive2 { name="ggpolypath"; version="0.1.0"; sha256="0g9zfal3vqcx16fi4abxm6l5sam475lk1f6bdik487wc2v0dkq83"; depends=[ggplot2]; }; - ggpp = derive2 { name="ggpp"; version="0.4.3"; sha256="175mk5zcnhwr8hvs1567x0k0vmq7g2qnq250pnxlwnv1wpmvrqhz"; depends=[dplyr ggplot2 glue gridExtra lubridate magrittr MASS polynom rlang scales stringr tibble xts zoo]; }; + ggpp = derive2 { name="ggpp"; version="0.4.4"; sha256="0wcaczxjav5yg8h2197cf288mqk13p3iq675q0x0di9g8lnblvk1"; depends=[dplyr ggplot2 glue gridExtra lubridate magrittr MASS polynom rlang scales stringr tibble xts zoo]; }; ggprism = derive2 { name="ggprism"; version="1.0.3"; sha256="09dh0r8r5s61i5dbk6rswajc2vm7k8wvlqyvzq8wr160676lycjp"; depends=[digest ggplot2 glue gtable rlang scales tibble]; }; ggpubr = derive2 { name="ggpubr"; version="0.4.0"; sha256="0x86lmghr25k8w90yrp360dn42dhp5cjvjpdiv2s2gxfn701xcmb"; depends=[cowplot dplyr ggplot2 ggrepel ggsci ggsignif glue gridExtra magrittr polynom purrr rlang rstatix scales tibble tidyr]; }; ggpval = derive2 { name="ggpval"; version="0.2.4"; sha256="0zi3k79iy8pwnrgi9r9l4r9ghv1db9cxsagif8wsrlak4nr8akza"; depends=[data_table ggplot2]; }; @@ -10182,7 +9936,7 @@ in with self; { ggquiver = derive2 { name="ggquiver"; version="0.3.2"; sha256="1nzqfm9byr0bmj0l6fdf8afymbhc6qjq5iff3wnng7gqqaa9s6dc"; depends=[ggplot2]; }; ggraph = derive2 { name="ggraph"; version="2.0.5"; sha256="0m4n8iw2b9jk8hcy5blg5w59zsqcpsbv27wbw598dvljpafx8sp3"; depends=[digest dplyr ggforce ggplot2 ggrepel graphlayouts gtable igraph MASS Rcpp rlang scales tidygraph viridis withr]; }; ggraptR = derive2 { name="ggraptR"; version="1.3"; sha256="1i6jp0n1sz5b4sv3d4h5624zhlknih2qp6p2m2ri6s3gsh1pl9zz"; depends=[dplyr ggplot2 pacman purrr shiny]; }; - ggrasp = derive2 { name="ggrasp"; version="1.0"; sha256="0lini89mcxl30kx38vny9896hdf4afrz5dgivbbikkb2yyfh2cq1"; depends=[ape bgmm colorspace ggplot2 mixtools]; }; + ggrasp = derive2 { name="ggrasp"; version="1.2"; sha256="0jl4bmhsisqc7nam8r027lr1qp0yr6bvdiyycknp7bkl65cg2x1z"; depends=[ape bgmm colorspace ggplot2 mixtools]; }; ggrastr = derive2 { name="ggrastr"; version="1.0.1"; sha256="07sx5wlawfyb0zy5am2q1ajhkdym5r9ih47p57l8bv4dlc7ykml2"; depends=[Cairo ggbeeswarm ggplot2 png ragg]; }; ggrepel = derive2 { name="ggrepel"; version="0.9.1"; sha256="1z5xyr5f4aryy0v1gzz9m8m4s5fzzwbrf0fxll1nbflr8xnr3yr9"; depends=[ggplot2 Rcpp rlang scales]; }; ggridges = derive2 { name="ggridges"; version="0.5.3"; sha256="0bmlqy1p6rac90af97ffpdi6php7dblx66l2hcm8ljidgyqzmspm"; depends=[ggplot2 plyr scales withr]; }; @@ -10201,23 +9955,24 @@ in with self; { ggsolvencyii = derive2 { name="ggsolvencyii"; version="0.1.2"; sha256="0jzj4iglgzwp6pfs5zr7mirdiqrrmbwdvl245b1fwf42rnxbqrq6"; depends=[dplyr ggplot2 magrittr tidyr]; }; ggsom = derive2 { name="ggsom"; version="0.4.0"; sha256="0qsih00rm3ng2zh6p2s7a35rh1qlvbkn82s53v765w60fjmhwkwf"; depends=[assertthat data_table dplyr entropy ggplot2 kohonen magrittr tibble tidyr]; }; ggspatial = derive2 { name="ggspatial"; version="1.1.5"; sha256="0mkgfpdgarnfvwx4g8x88b2afclknbrnidj9ib754dn4xbd7shfa"; depends=[abind ggplot2 glue rlang rosm scales sf tibble tidyr]; }; - ggspectra = derive2 { name="ggspectra"; version="0.3.7"; sha256="0xd8g2m73qa5bd4wk1a81ayy48agqm4h9nadafs3qrcg8wszk8nm"; depends=[dplyr ggplot2 ggrepel lubridate photobiology photobiologyWavebands scales tibble tidyr]; }; + ggspectra = derive2 { name="ggspectra"; version="0.3.8"; sha256="1h77i48v81kvr1wmqyml4kiy13wb743ln8wskwcxkc8j95wpm9k1"; depends=[ggplot2 ggrepel lubridate photobiology photobiologyWavebands scales tibble tidyr tidyselect]; }; ggstance = derive2 { name="ggstance"; version="0.3.5"; sha256="0jz9vvnmcc6a38n8nzr458r65sna23bgn5r8mxdhzdlyqibihr7d"; depends=[ggplot2 plyr rlang withr]; }; ggstar = derive2 { name="ggstar"; version="1.0.3"; sha256="0d96qsx0id82isaz62plkxwc8a6zcs19s1asyx316ciq9a325pr3"; depends=[ggplot2 gridExtra scales]; }; ggstatsplot = derive2 { name="ggstatsplot"; version="0.9.1"; sha256="1x2g7zb2lm0jyv5qncr4bv84yhc00n6c3nxvyskv22fh3yljxm26"; depends=[correlation dplyr ggplot2 ggrepel ggsignif glue insight paletteer parameters patchwork performance purrr rlang statsExpressions tidyr WRS2]; }; ggstream = derive2 { name="ggstream"; version="0.1.0"; sha256="0d6g5916mfrg2srcqjhlpm4acp4g16vq9ks4x37yzkpr34vi5x7j"; depends=[dplyr forcats ggplot2 magrittr purrr tidyr]; }; ggstudent = derive2 { name="ggstudent"; version="0.1.1-1"; sha256="0qs27b4lksaaaspavkycbzf8cfjxjli7xrfjby71sl0lca3fwm1g"; depends=[dplyr ggplot2]; }; + ggsurvey = derive2 { name="ggsurvey"; version="1.0.0"; sha256="1a50ac2546pxa35k59j4ih0csiyfjdgqfqwm3fb5ny7jx1mk0hmi"; depends=[dplyr ggplot2 hexbin survey]; }; ggswissmaps = derive2 { name="ggswissmaps"; version="0.1.1"; sha256="0is48x6k2p5dgj9q4km0dv33a9pcpfhlai9vz295y3acpyrkmnn4"; depends=[ggplot2]; }; ggtea = derive2 { name="ggtea"; version="0.1.1"; sha256="04g8g17ziw13rxjzkvgy5yd0z15ypxk0b8fq2y1vk8acsqr2dv11"; depends=[ggplot2]; }; ggtern = derive2 { name="ggtern"; version="3.3.5"; sha256="15hhn8msy0l8zbq8ms0zvg1iajn1c28gd77v3hp6dvwwsla8zzbd"; depends=[compositions ggplot2 gridExtra gtable hexbin latex2exp lattice MASS plyr proto scales]; }; ggtext = derive2 { name="ggtext"; version="0.1.1"; sha256="0n19dlcys8v7myfyckr6dnq0kx79k3sbh8nwx1jsx8pgzfbi8a2b"; depends=[ggplot2 gridtext rlang scales]; }; ggthemes = derive2 { name="ggthemes"; version="4.2.4"; sha256="0rw5f6axyz1pqn6qx9jwm38hjzn8bqs1nfjkvm96z3xnyn61cdbv"; depends=[ggplot2 purrr scales stringr tibble]; }; ggtikz = derive2 { name="ggtikz"; version="0.1.0"; sha256="1bgvpdnyy2gsm0yzs5z6jbjpxnnj3mijiyq2d2q0414ky3vpcxsw"; depends=[dplyr ggplot2 tikzDevice]; }; + ggtrendline = derive2 { name="ggtrendline"; version="1.0.3"; sha256="10ml5mdijh27b1js67zwaywn81bvz6aja1bn60k3rnr964nsljsj"; depends=[ggplot2]; }; ggupset = derive2 { name="ggupset"; version="0.3.0"; sha256="079a1fghhbxhkx42ac0n5chmh07i60m2pkdk76frqbbmwrw7inx4"; depends=[ggplot2 gtable rlang scales tibble]; }; ggvenn = derive2 { name="ggvenn"; version="0.1.9"; sha256="0bm52j3idchignp6nrw7c76jlbfkjf5zng258957vq019vx9qxrq"; depends=[dplyr ggplot2]; }; ggversa = derive2 { name="ggversa"; version="0.0.1"; sha256="0xqn8iznrm8q30pxwka88wi1z7lndi6lm12rq6ngcaxf294fbz01"; depends=[]; }; ggvis = derive2 { name="ggvis"; version="0.4.7"; sha256="1qv512pd4x5vmx15y9nvqmabbbw14h75fmi1sjbcg5yl25z0cswy"; depends=[assertthat dplyr htmltools jsonlite magrittr rlang shiny]; }; - ggvoronoi = derive2 { name="ggvoronoi"; version="0.8.4"; sha256="1qq5iw1m90s060cffwq8agp5cs4vgzg9i3wbnr6c0p0r081wz4rs"; depends=[deldir ggplot2 raster rgeos sp]; }; ggwordcloud = derive2 { name="ggwordcloud"; version="0.5.0"; sha256="0mr92738s3j9wm6mkr5hd2flqsqw3vfjifv3fajsygysbwrl8dn8"; depends=[colorspace ggplot2 png Rcpp scales]; }; ggx = derive2 { name="ggx"; version="0.1.1"; sha256="13yvckny2b7b7rhgi28xm8379paskin78wm5095s1ily9a2dxgkg"; depends=[ggplot2 sets]; }; gh = derive2 { name="gh"; version="1.3.0"; sha256="077drbxz3rx7idv6w24ipj1p6jnzv86a3iyryab699cc9q2kjh54"; depends=[cli gitcreds httr ini jsonlite]; }; @@ -10226,7 +9981,7 @@ in with self; { ghee = derive2 { name="ghee"; version="0.1.0"; sha256="0b3czx2ibi5p8xl7i36zxnab032vrkh5bv204r7wgg1xpx8pdlra"; depends=[gh jsonlite]; }; ghibli = derive2 { name="ghibli"; version="0.3.2"; sha256="0762dy3x7w0q1swag2lh33cpqdr9bbqw0963ymdpnchawdh5m50z"; depends=[prismatic]; }; ghql = derive2 { name="ghql"; version="0.1.0"; sha256="19awg98r2hwwwwrwh0166y8ij1clf58vrf02i8fhhfzddx3an6bz"; depends=[crul graphql jsonlite R6]; }; - ghyp = derive2 { name="ghyp"; version="1.6.1"; sha256="02xiznl1v0fksqwyvjg8075qbiy29y1h1q8cr3lsbr95h8iyzqfh"; depends=[MASS numDeriv]; }; + ghyp = derive2 { name="ghyp"; version="1.6.2"; sha256="0ci3xz5v5r9vysfx2y3cgy706wssk9pw505mb57rb4yy0mhry19i"; depends=[MASS numDeriv]; }; ghypernet = derive2 { name="ghypernet"; version="1.1.0"; sha256="0k4w37vnhpanpa80la8rscgimnnzzid5v59109xfbbz1xxx1bb49"; depends=[dplyr extraDistr numbers pbmcapply plyr purrr reshape2 rlang rootSolve texreg]; }; gibble = derive2 { name="gibble"; version="0.4.0"; sha256="19il4si7ch5jr7plr8qwv7jrc5kfkxmh5jrcdvbn688gxcnv7bs0"; depends=[dplyr rlang tibble]; }; gibbs_met = derive2 { name="gibbs.met"; version="1.1-3"; sha256="1yb5n8rkphsnxqn8rv8i54pgycv9p7x1xhinx4l5wzrds3xhf2dc"; depends=[]; }; @@ -10248,14 +10003,14 @@ in with self; { gitcreds = derive2 { name="gitcreds"; version="0.1.1"; sha256="1snzn7nxy0rwz0bzjsg6k04c0n811dgn8gn9cmn2v78aj57ayjmi"; depends=[]; }; gitdown = derive2 { name="gitdown"; version="0.1.6"; sha256="16g4kngal0w0vjrympxmnq16rpxks4wbj35aasvr3p2srgqn86by"; depends=[attempt bookdown dplyr git2r knitr magrittr purrr rmarkdown stringi tidyr]; }; gitear = derive2 { name="gitear"; version="1.0.0"; sha256="139h19yyi7bpkps2vskdnga43ggpgb9fg8jdr7n8vgadxjamv98p"; depends=[dplyr httr jsonlite magrittr mockery Rcpp stringr tibble tidyr]; }; - gitgadget = derive2 { name="gitgadget"; version="0.6.6"; sha256="1c8404mqcl5cp5wxm2mszry7a29da96hd5ng3f2ynbfvxis709km"; depends=[callr curl dplyr jsonlite markdown miniUI rstudioapi shiny shinyFiles usethis]; }; + gitgadget = derive2 { name="gitgadget"; version="0.6.9"; sha256="0hd319pfrhc79vjallqaaz079qdk3h9a9724q8j7j65nfnclqppg"; depends=[callr curl dplyr jsonlite markdown miniUI rstudioapi shiny shinyFiles usethis]; }; githubinstall = derive2 { name="githubinstall"; version="0.2.2"; sha256="0hqh86r2007hzdbm8rr0fwqhhsna7ji8sdgmdnrxkxraa5f2pfz3"; depends=[curl data_table devtools httr jsonlite mockery]; }; gitignore = derive2 { name="gitignore"; version="0.1.5"; sha256="1jph54ah4ajb5xakbpnbmp44ddqz5np7c60441vhfn7nxa5b9cpx"; depends=[clipr clisymbols crayon curl glue here jsonlite purrr xfun]; }; gitlabr = derive2 { name="gitlabr"; version="2.0.0"; sha256="0snd1pscv09wn3vjvfbvf87dcd43i25m2x3ra8vw37c2zd8hj500"; depends=[arpr base64enc dplyr httr magrittr purrr shiny stringr tibble]; }; gitlink = derive2 { name="gitlink"; version="0.1.3"; sha256="1g34cyx35wlpq42alsayk69x708zxqgvbdndb7j6n1q0rm4vncvd"; depends=[htmltools rlang]; }; gittargets = derive2 { name="gittargets"; version="0.0.3"; sha256="00mv901r116s1jshbxinfnckh88q2083628898dag31ixj3bqlim"; depends=[cli data_table gert processx targets tibble uuid]; }; givitiR = derive2 { name="givitiR"; version="1.3"; sha256="0y2slhxhj7k413kjaydin9hq3x2xgx4cgjshdplwnmg3x2nakn31"; depends=[alabama rootSolve]; }; - gjam = derive2 { name="gjam"; version="2.5.2"; sha256="0shq8cq7dq13f3x0ycx56izf9158aap76kghlcxhl8y42mgarxl5"; depends=[MASS RANN Rcpp RcppArmadillo]; }; + gjam = derive2 { name="gjam"; version="2.6"; sha256="0dq8aksvfpapzc0zyghz4q8mzxyjhd1160w6dp44yn985g8v60v2"; depends=[MASS RANN Rcpp RcppArmadillo]; }; gk = derive2 { name="gk"; version="0.5.1"; sha256="1hgxb1lp78pbnj22i7ryf46im301j05y7hh75z2fxvv5nqgg2v75"; depends=[Ecdat lubridate progress]; }; gkgraphR = derive2 { name="gkgraphR"; version="1.0.2"; sha256="1sb52hhpwm3bq7rn2xdq5vly6z1c5yab9a26xzgj3c5s47vk02pa"; depends=[httr ISOcodes jsonlite]; }; gkmSVM = derive2 { name="gkmSVM"; version="0.81.0"; sha256="119g5rhc7ffyviz04r04aj5z1g6abnj3ddd01g7db505sdr6lapj"; depends=[kernlab Rcpp ROCR seqinr]; }; @@ -10265,7 +10020,7 @@ in with self; { glassdoor = derive2 { name="glassdoor"; version="0.8.1"; sha256="0r85k1fyk8979ahfmd4vmzkhyvrlnpkgjwg1yi7092kpx8877lj0"; depends=[httr]; }; glasso = derive2 { name="glasso"; version="1.11"; sha256="02p3612rpydk195n2qr77lp1j2w8zsw1ckkk98c8angm4r5q8dsc"; depends=[]; }; glassoFast = derive2 { name="glassoFast"; version="1.0"; sha256="1sgmh4l06q7mrmgnimphpqgix4k4jzaj2l30kpmnf92caa2v7ngw"; depends=[]; }; - glba = derive2 { name="glba"; version="0.2"; sha256="0ckcz6v6mfbv34s8sp086czhb5l58sky79k84332rrz6wj47p3md"; depends=[]; }; + glba = derive2 { name="glba"; version="0.2.1"; sha256="0dilf144xfn454xfsndbddhc28gzf36fiknc2qwcx3bp7z5caqjn"; depends=[]; }; glca = derive2 { name="glca"; version="1.3.3"; sha256="1fgbwgn2v7l7ikwl88fkzvikhzb5hgwlawly50rml5w8jcfm0nkz"; depends=[MASS Rcpp]; }; glcm = derive2 { name="glcm"; version="1.6.5"; sha256="13my6y9jqd86cg5n74p4b8mqbdgwnanxx4qf1rrhm5jxf6sa31qm"; depends=[raster Rcpp RcppArmadillo]; }; gld = derive2 { name="gld"; version="2.6.4"; sha256="08rkv7g6ci969vh9fbyg3lrpfmjhbiwzdhcjs9j6s9bf3gpdmdhd"; depends=[e1071 lmom]; }; @@ -10280,22 +10035,20 @@ in with self; { glmbb = derive2 { name="glmbb"; version="0.5-1"; sha256="1jy77z5fr781rm5mx6kszwi2zlvnpfwi24fn9vw1kza4jzcw9pjw"; depends=[digest]; }; glmc = derive2 { name="glmc"; version="0.3-1"; sha256="0x6jk2l5rpjkp5x815gpiwv8maa7mhmy6m8gaxbv1cbn3zyccynn"; depends=[emplik]; }; glmdisc = derive2 { name="glmdisc"; version="0.6"; sha256="031rz3s5d7hz9fzmsj7aqhzwrn05rnfvk9292k2r0qpr6k02mk3b"; depends=[caret dplyr gam magrittr MASS nnet Rcpp RcppEigen RcppNumerical]; }; - glmdm = derive2 { name="glmdm"; version="2.60"; sha256="09vljki24fccqkvxkmg2i6a8pxqhfwm155b41m2q51lqaq29bfw7"; depends=[]; }; glme = derive2 { name="glme"; version="0.1.0"; sha256="1ysg1yx0pdyxlbkn36023230yky8wj3rvi3skrdqdjbnnyzhn49b"; depends=[dplyr nlme reshape]; }; glmertree = derive2 { name="glmertree"; version="0.2-0"; sha256="0lfn6dap38i6cnfy4gdap13aq81h9cm3bip7ci57q9br9b00x7ib"; depends=[Formula lme4 partykit]; }; glmglrt = derive2 { name="glmglrt"; version="0.2.2"; sha256="1954ywshnqzr7h77wshf63y3zx3ra8mrfabg5dqjhkgv4rsk3h1y"; depends=[MASS parameters]; }; glmlep = derive2 { name="glmlep"; version="0.2"; sha256="0rq2vxbr732r725pn8qdvppxcrhjhyvlr550svfgy1inq985c1w4"; depends=[]; }; glmm = derive2 { name="glmm"; version="1.4.3"; sha256="08fry79s9nbcss6z5pbi7yjjdwyz6aq5xn89hzmpdiynid07x5si"; depends=[doParallel foreach itertools Matrix mvtnorm trust]; }; - glmm_hp = derive2 { name="glmm.hp"; version="0.0-2"; sha256="1fjhrfgpl0xf7v6zls8v1dqm0bqds96mkiqk27bx6iy6wmadlwgk"; depends=[ggplot2 lme4 MuMIn]; }; + glmm_hp = derive2 { name="glmm.hp"; version="0.0-4"; sha256="1ly1b56c22vgxlcahpyb7bg46nah7si44clip461cwlp3ngdmr6w"; depends=[ggplot2 lme4 MuMIn]; }; glmmEP = derive2 { name="glmmEP"; version="1.0-3.1"; sha256="0fql85m0mxn58jh3mgrcw56bb4dx7amrz39ngqrljwi5pv5i7aj4"; depends=[lme4 matrixcalc]; }; - glmmLasso = derive2 { name="glmmLasso"; version="1.5.1"; sha256="1az9vdnyqyrfn1q7zrn6x4ywx77b0vg65cni45x37b0ybkwpis39"; depends=[Matrix minqa]; }; - glmmML = derive2 { name="glmmML"; version="1.1.1"; sha256="1m2dcw522nd78x7z7la7a4cii3030s0bl4sqxbvkxn1k15jf4pr5"; depends=[]; }; - glmmPen = derive2 { name="glmmPen"; version="1.5.1.8"; sha256="04pxkhklyx26mngg7bwhlrqd3bh1ay1h5ddfacpg5jnigp2rlk84"; depends=[BH bigmemory ggplot2 lme4 MASS Matrix mvtnorm ncvreg Rcpp RcppArmadillo RcppEigen reshape2 rstan rstantools StanHeaders stringr]; }; + glmmLasso = derive2 { name="glmmLasso"; version="1.6.1"; sha256="0ns3qscfmnvvi4caz8d5ayp396s688qwhlhkm2qrhww4vqza4040"; depends=[GMMBoost Matrix minqa Rcpp RcppEigen]; }; + glmmML = derive2 { name="glmmML"; version="1.1.3"; sha256="0z2ylgp37aj5sl0yxnx7zar2vsk5vhjv175x5kahdvdx6h44zqr4"; depends=[]; }; + glmmPen = derive2 { name="glmmPen"; version="1.5.1.10"; sha256="0qgmyp708qm8pvb62bw8qqk5is1bdbkwmkf0f3cn6z4hkjfgjfns"; depends=[BH bigmemory ggplot2 lme4 MASS Matrix mvtnorm ncvreg Rcpp RcppArmadillo RcppEigen reshape2 rstan rstantools StanHeaders stringr]; }; glmmSeq = derive2 { name="glmmSeq"; version="0.1.0"; sha256="0mdcwh6vvh4pc64r4jl78dr6x8fwclbbx8s9kf2sj39mm7iqpkqz"; depends=[car gghalves ggplot2 ggpubr lme4 MASS pbapply pbmcapply plotly qvalue]; }; glmmTMB = derive2 { name="glmmTMB"; version="1.1.3"; sha256="0xdjc3gx0cj098rrjzlsy9cccxzfvn029xh4ycpya4xjhxsykldr"; depends=[lme4 Matrix nlme numDeriv RcppEigen TMB]; }; glmmfields = derive2 { name="glmmfields"; version="0.1.4"; sha256="0gnb2s34xz7cjyaa2w2wq7n6c5016a14mc03kalvwdv3f7b98zan"; depends=[assertthat BH broom broom_mixed cluster dplyr forcats ggplot2 loo mvtnorm nlme Rcpp RcppEigen reshape2 rstan rstantools StanHeaders tibble]; }; - glmmsr = derive2 { name="glmmsr"; version="0.2.3"; sha256="1fbg5zji0xjr9q1yc6phsp37nsrj7nfs8yiri0j9s84wzgwjili1"; depends=[BH lme4 Matrix numDeriv R6 Rcpp RcppEigen]; }; - glmnet = derive2 { name="glmnet"; version="4.1-3"; sha256="0nij8v44b5dvp1vc843sfkl9ds83n6g687m2p37q1rdn82m3bg34"; depends=[foreach Matrix Rcpp RcppEigen shape survival]; }; + glmnet = derive2 { name="glmnet"; version="4.1-4"; sha256="1y80a3b5s24ywhlil3r7b3a0vs9j59d7jkxrqa8zz09x1c5ggc7n"; depends=[foreach Matrix Rcpp RcppEigen shape survival]; }; glmnetSE = derive2 { name="glmnetSE"; version="0.0.1"; sha256="0qj3c8qrx3vl0dr9prravfjwzqv1yfi771xfss9d44wlvjz5f4gp"; depends=[boot glmnet]; }; glmnetUtils = derive2 { name="glmnetUtils"; version="1.1.8"; sha256="1k8ivzjgpkm2a948qxx3wmkhlppbk31qc76spv2pscmp24x0lxyn"; depends=[glmnet Matrix]; }; glmnetcr = derive2 { name="glmnetcr"; version="1.0.6"; sha256="0cs0yj2js0920iggcw2vci5y9hnsm3hd7wpd7mwnx8mszwrklawg"; depends=[glmnet]; }; @@ -10308,18 +10061,16 @@ in with self; { glmtree = derive2 { name="glmtree"; version="0.2"; sha256="07b7ma38r5cjv6c33q1n2f8xvzn3lj004i8v947pqdhg3fi9wlc6"; depends=[caret dplyr magrittr partykit]; }; glmulti = derive2 { name="glmulti"; version="1.0.8"; sha256="0zviahj99645s1xs2f9z7rnv95x4rdz7mfwzy3qjfw46yqpfj5cn"; depends=[leaps rJava]; }; glmvsd = derive2 { name="glmvsd"; version="1.4"; sha256="03axsn85axs4d6fdlr3wcdwq6qa4991svkqc7k9r52kk1ar0w5zz"; depends=[brglm glmnet MASS ncvreg]; }; - glmx = derive2 { name="glmx"; version="0.1-1"; sha256="06v2qxgr16w0qnfhjr9vdqcad5v475pwg2yhw0i236yzqbnsssh6"; depends=[Formula lmtest MASS sandwich]; }; + glmx = derive2 { name="glmx"; version="0.1-3"; sha256="0wfwzc6r5xcaaz6knj2chzwjvryfigpazrbd0kn82k0mprsm1vqz"; depends=[Formula lmtest MASS sandwich]; }; glmxdiag = derive2 { name="glmxdiag"; version="1.0.0"; sha256="0m077j7prjc38yshq8ahprfsai0rc20qma2njjbdi975mrwxi25c"; depends=[VGAM]; }; - globalGSA = derive2 { name="globalGSA"; version="1.0"; sha256="1f3xv03m6g2p725ff0xjhvn2xcfm7r7flyrba080i4ldy6fd8jg8"; depends=[]; }; globalKinhom = derive2 { name="globalKinhom"; version="0.1.4"; sha256="0ah05yl0fxiih3lfh8gxls01ikanwg3z8npbgv625zjfrqp1qwsw"; depends=[spatstat_core spatstat_geom spatstat_random]; }; globalOptTests = derive2 { name="globalOptTests"; version="1.1"; sha256="0yf4p82dpjh36ddpfrby7m3fnj2blf5s76lncflch917sq251h4f"; depends=[]; }; - globals = derive2 { name="globals"; version="0.14.0"; sha256="1wrjiiif6rpc268zz79pvpw33si6n6ffgxdnxmmcracwhb5vqg90"; depends=[codetools]; }; + globals = derive2 { name="globals"; version="0.15.0"; sha256="15llx4233ihj4w815k7inc17530w9ja0mi29n1i0s2sr42j8jdpq"; depends=[codetools]; }; globe = derive2 { name="globe"; version="1.2-0"; sha256="0xa0q5dac0g7xdlr679f3km8nqxlm7gi4msp9fbfivfvy0rmri96"; depends=[]; }; - glogis = derive2 { name="glogis"; version="1.0-1"; sha256="1sbvcg5slvd2c7fasvbj534x36rh11zq3mxv5z0jwpqd6h1xadmd"; depends=[sandwich zoo]; }; - glottospace = derive2 { name="glottospace"; version="0.0.111"; sha256="0826nx4555ign0yjhcq0s0g2c262bprl9z91v9bs3mc8d4f9x0g2"; depends=[dplyr ggplot2 magrittr purrr readxl rlang rnaturalearth rnaturalearthdata sf tibble tidyr tmap units writexl]; }; + glogis = derive2 { name="glogis"; version="1.0-2"; sha256="15zk11p10v8fmqvmg9gdhxa0h6s5axvmdkxkpwrg8sgp2ln94fr9"; depends=[sandwich zoo]; }; + glottospace = derive2 { name="glottospace"; version="0.0.112"; sha256="1bgyxki16mh38pw1476hq9f9r2899vs6ax7dsyrn1xzcad6x91y3"; depends=[dplyr ggplot2 magrittr purrr readxl rlang rnaturalearth rnaturalearthdata sf tibble tidyr tmap units writexl]; }; glow = derive2 { name="glow"; version="0.10.1"; sha256="1br29hy5j30k5q4xk1dglxlhqalhm76hnx8xg73v6whcg5j11392"; depends=[ggplot2 R6 Rcpp RcppEigen RcppParallel scales]; }; glpkAPI = derive2 { name="glpkAPI"; version="1.3.3"; sha256="07bksiqmq2n7ki3f3sxph4v44k7q2b0d88jwjgfxzdn33i65wqyq"; depends=[]; }; - glrt = derive2 { name="glrt"; version="2.0"; sha256="0p2b0digndvnn396ynv56cdg436n3ll7pxkb81rs3dhwbyqyc948"; depends=[survival]; }; glue = derive2 { name="glue"; version="1.6.2"; sha256="1gzxk5jgdh2xq9r7z09xs306ygzf27vhg3pyfl7ck1755gqii9cx"; depends=[]; }; gluedown = derive2 { name="gluedown"; version="1.0.4"; sha256="1rvaac27kc4mppmw9kdwjaqsa7lwfzwffv63c8cky1z0xrsc5zz1"; depends=[glue magrittr]; }; gluvarpro = derive2 { name="gluvarpro"; version="4.0"; sha256="09l9yincr1k5j9wnj3zvfzsffjh3r54aa8fn0ik8vhlbq13ag8kp"; depends=[ggplot2 gridExtra pracma scales tidyr zoo]; }; @@ -10327,10 +10078,10 @@ in with self; { glycanr = derive2 { name="glycanr"; version="0.4.0"; sha256="1ic2v2dim0a8kzl38vx8an80jrbzimng0plrx62a1ps1jnczihl9"; depends=[coin dplyr ggplot2 tidyr]; }; gm = derive2 { name="gm"; version="1.0.2"; sha256="1g0frcfk2ybhhz0sixdmj8h3z61acaxs10ybja60q91mxlyix2zx"; depends=[base64enc glue htmltools knitr magick magrittr MASS rlang rstudioapi stringr]; }; gmDatabase = derive2 { name="gmDatabase"; version="0.5.0"; sha256="0prap4a8pvylmvakd2ii87jz9bqf0vvfsxdi4iwa40nx444hqhx2"; depends=[DBI digest foreach RMySQL shiny]; }; - gmGeostats = derive2 { name="gmGeostats"; version="0.11.0"; sha256="137v0d0dkdvcblh4cywvj3n7v36pf616pxkm4swm68r3knn4xqsi"; depends=[boot compositions foreach gstat RColorBrewer sp]; }; + gmGeostats = derive2 { name="gmGeostats"; version="0.11.1"; sha256="0dbvvd9ab6ik5a9fhzk6md4y5lbjib4axhml0i09w1kd3p4y55jy"; depends=[boot compositions foreach gstat RColorBrewer sp]; }; gma = derive2 { name="gma"; version="1.0"; sha256="08hxbs9z4vq5zjis0lgdcvlysaj1k7i0icdk3wsyqf3wd9znsibi"; depends=[car MASS nlme]; }; gmailr = derive2 { name="gmailr"; version="1.0.1"; sha256="1cfirp7a5jg9mprzj55ppyag4l527l8czrq4a1cxc8qrm8kpzx0b"; depends=[base64enc crayon gargle httr jsonlite lifecycle magrittr mime rematch2]; }; - gmapsdistance = derive2 { name="gmapsdistance"; version="3.4"; sha256="1hazf6xb4ja6h2lrl63kbd78wzny9sljiid9rq1r3szn3l1mc7dn"; depends=[RCurl XML]; }; + gmapsdistance = derive2 { name="gmapsdistance"; version="4.0.0"; sha256="1qi9xsm0izkgj1lfg353lsg4hl0gz0jadkygrbyimpiqcfl9w6jg"; depends=[RCurl XML]; }; gmat = derive2 { name="gmat"; version="0.2.2"; sha256="0iq2b3s60fyam45ykk67xyi2yhr8ma1s2vw4059357j1948525p2"; depends=[gRbase igraph]; }; gmeta = derive2 { name="gmeta"; version="2.3-1"; sha256="02w3a8c189wdvcxsnclbgzb6bc9fq88rcw2danxa6i9g7q4kq2sp"; depends=[BiasedUrn binom]; }; gmfd = derive2 { name="gmfd"; version="1.0.1"; sha256="03sag09x7pjyzsp6w1z06108ig068krmw75064cnl3pqfvfyjfgr"; depends=[]; }; @@ -10342,10 +10093,10 @@ in with self; { gmpoly = derive2 { name="gmpoly"; version="1.1.0"; sha256="0rlmwlxyg9b8gqyrc7mbqv7x86v9pqj51pd847raq7x1smjnz1kg"; depends=[english gmp mvp purrr]; }; gms = derive2 { name="gms"; version="0.4.0"; sha256="1m7bhy4vsz6l09pal9ibjlskmbyjmc29hqwjim1x8yansd5bxpzv"; depends=[dplyr rlang stringr yaml]; }; gmt = derive2 { name="gmt"; version="2.0.2"; sha256="0z5abh0kw97y90nxkkxxg2xgv1avxijf71v88lwhy25jgv8r7b38"; depends=[]; }; - gmvarkit = derive2 { name="gmvarkit"; version="2.0.2"; sha256="0si4a4ds9804rssim7vljv3q7ny54kd1lf9sljisrfilnbj69qsy"; depends=[Brobdingnag gsl mvnfast pbapply]; }; + gmvarkit = derive2 { name="gmvarkit"; version="2.0.3"; sha256="1y8rj13a4xwy8lncdmflywa4ccwaw756k0a221by1ijp7jsvq895"; depends=[Brobdingnag gsl mvnfast pbapply]; }; gnFit = derive2 { name="gnFit"; version="0.2.0"; sha256="0cji4zjslh18dfj0l827r6br4hx2f0akiaxrg7fhhyyyhgdcjnsm"; depends=[ismev rmutil]; }; gnlm = derive2 { name="gnlm"; version="1.1.1"; sha256="1krbz791l5qc06sh6my0bkq420b5afncw87lhyx1yiml2yg46zrk"; depends=[rmutil]; }; - gnm = derive2 { name="gnm"; version="1.1-1"; sha256="1lddsdsg43wpg681s906i4xqqfbjdd1qb9ml5dfprb02i1806aa2"; depends=[MASS Matrix nnet qvcalc relimp]; }; + gnm = derive2 { name="gnm"; version="1.1-2"; sha256="1yzhfvn1fpskh8gwg65sffmgzwhjv7jhc83xazh1riddx8ikj5ra"; depends=[MASS Matrix nnet qvcalc relimp]; }; gnn = derive2 { name="gnn"; version="0.0-3"; sha256="0hk05g8kbsl03wy929y9wnhyfimmkz4yy5qkza2y1v7mcggpjjhx"; depends=[copula keras qrng R6 tensorflow]; }; gnomonicM = derive2 { name="gnomonicM"; version="1.0.1"; sha256="1yv5ry21rv69hfd4wmhnwhvarnp49hn200aws428ahs5wvx3md1v"; depends=[kableExtra minqa triangle]; }; gnorm = derive2 { name="gnorm"; version="1.0.0"; sha256="17h43qwb07wk5hiif89k6dgn6bbdsqfy2jy3k5blbdhhp3b9jcqp"; depends=[]; }; @@ -10361,14 +10112,12 @@ in with self; { gofgamma = derive2 { name="gofgamma"; version="1.0"; sha256="00wda3fandrd1kkm20fb615g5fd0wykk3s0xn0xh9da28q08yh2m"; depends=[]; }; goft = derive2 { name="goft"; version="1.3.6"; sha256="0ag1bks44hm787sgbab70ab9q0dzbfsx70ldprafjx92gg1cqv5s"; depends=[fitdistrplus sn]; }; goftest = derive2 { name="goftest"; version="1.2-3"; sha256="06bz6k7smr4jbvzmb73qc5fkf4my59w5gbl18wlmpkkymsv78prs"; depends=[]; }; - gogarch = derive2 { name="gogarch"; version="0.7-2"; sha256="03gpl73zc6kx4gni59xbg7b38dkpd7p4c7kvlqm46f58j257viik"; depends=[fastICA fGarch]; }; - goldi = derive2 { name="goldi"; version="1.0.1"; sha256="191ac02bwrxr3khq6qirhxzfhv7pqfhqyg7jb473p5vwygpvc53l"; depends=[dplyr futile_logger magrittr Rcpp RcppArmadillo SnowballC tm]; }; + gogarch = derive2 { name="gogarch"; version="0.7-5"; sha256="01ikd7ngzgyrgkr637cxnj5xqmdmsj6szcr9f8wmrxvly0b3qf1i"; depends=[fastICA fGarch]; }; goldilocks = derive2 { name="goldilocks"; version="0.3.0"; sha256="1h16kfalyklc7i3rix1ml83wjcbi9wv3z3rwxa83gp2h6nfpzpwl"; depends=[dplyr fastlogranktest pbmcapply PWEALL rlang survival]; }; golem = derive2 { name="golem"; version="0.3.2"; sha256="008zhhmbgx6v3acw1gmzgzcpq8xj1i5mxpns6ixn538slrhlj5fx"; depends=[attempt brio cli config crayon desc fs here htmltools pkgload roxygen2 rstudioapi shiny usethis yaml]; }; gomms = derive2 { name="gomms"; version="1.0"; sha256="1i9d5y28wrhal990x7xxy99v3z9y2pzlakj7wnynd3dpx5pqr0jj"; depends=[]; }; gontr = derive2 { name="gontr"; version="1.1.0"; sha256="0asvpc3nizcn7cqdxr1j9hvhprmrazd8c7a2svhmln4vg9x1zzkp"; depends=[]; }; good = derive2 { name="good"; version="1.0.1"; sha256="0lgp8kpdiaprq78fzny5c344m2s1vb24y9x9m8rkg1kd769h56pv"; depends=[copula maxLik plyr]; }; - goodpractice = derive2 { name="goodpractice"; version="1.0.2"; sha256="08rnm8z0pry5mwpc7p37r6f2rd56dry9djpcvvs9yl170w56psx0"; depends=[clisymbols covr crayon cyclocomp desc jsonlite lintr praise rcmdcheck rstudioapi whoami withr xml2 xmlparsedata]; }; googleAnalyticsR = derive2 { name="googleAnalyticsR"; version="1.0.1"; sha256="02lipd1li3jmnjyc0f19fsblji3sjjzdy9zyq1f0ay5lfa6j2x51"; depends=[assertthat cli dplyr googleAuthR httr jsonlite magrittr measurementProtocol memoise purrr rlang tibble tidyr usethis whisker]; }; googleAuthR = derive2 { name="googleAuthR"; version="2.0.0"; sha256="1svgjrh4wb3qdavhmks2lmncqrapvw17dvlbk0z1nbny7fplnl5s"; depends=[assertthat cli digest gargle httr jsonlite memoise rlang]; }; googleCloudRunner = derive2 { name="googleCloudRunner"; version="0.5.0"; sha256="14nynl56gc8aj03wxbj243fz80j1wxd93ywfaivy1cgyfi3rid6z"; depends=[assertthat cli curl googleAuthR googleCloudStorageR googlePubsubR httr jose jsonlite openssl plumber usethis withr yaml]; }; @@ -10380,8 +10129,8 @@ in with self; { googlePrintr = derive2 { name="googlePrintr"; version="0.0.1"; sha256="19rm78x8qd61ilc6h1kn3dw63m6dfsckqkd3n76krvi0akgl72w5"; depends=[googleAuthR httr jsonlite]; }; googlePublicData = derive2 { name="googlePublicData"; version="0.16.1"; sha256="15hyslpqvncg21q581h061rfyg99y8lavqw1x8hzl7xzd49bn9r5"; depends=[readxl XML]; }; googlePubsubR = derive2 { name="googlePubsubR"; version="0.0.3"; sha256="114yhhqjpg7khgq82y1qdpnm6pbqinlgwh5n1lx6fzsm1ajhl0kv"; depends=[cli googleAuthR magrittr]; }; - googleTagManageR = derive2 { name="googleTagManageR"; version="0.1.6"; sha256="1y2avhgvzrpmpyx341di8ml2pdj10y8sdhn7zwjpxgzrxkmf4xxi"; depends=[assertthat dplyr future googleAuthR httr jsonlite purrr]; }; - googleVis = derive2 { name="googleVis"; version="0.6.12"; sha256="1h06qxclyrga45k5w8yryk32bi16q4kzbgpzrn74xkrzg77jg24r"; depends=[jsonlite]; }; + googleTagManageR = derive2 { name="googleTagManageR"; version="0.2.0"; sha256="0ia3ndz5vf3bc5kckyxwn71nngml6p67v8r3n6h79s12xn9jzylg"; depends=[assertthat dplyr future googleAuthR httr jsonlite purrr]; }; + googleVis = derive2 { name="googleVis"; version="0.7.0"; sha256="1s82xcs6zrlmnhay764bspzwvabfyi35nq6fwdrrk3v79q13c5jz"; depends=[jsonlite]; }; googledrive = derive2 { name="googledrive"; version="2.0.0"; sha256="09jsiknzyfgxd0nzdr3wrrjw24allch2x74h96qg8vh8dad4cp30"; depends=[cli gargle glue httr jsonlite lifecycle magrittr pillar purrr rlang tibble uuid vctrs withr]; }; googleformr = derive2 { name="googleformr"; version="0.0.3"; sha256="0smykcjyqmk61ws5jk462l8x5hg0h9nwq55q5pqfgcq1j3yfniqh"; depends=[httr rvest xml2]; }; googlenlp = derive2 { name="googlenlp"; version="0.2.0"; sha256="0d0g18i3im2s5f14k69ym3vwf9a7zkaval3nwrip97xcl6kf4x9h"; depends=[dplyr httr jsonlite purrr readr rlang]; }; @@ -10390,6 +10139,7 @@ in with self; { googleway = derive2 { name="googleway"; version="2.7.6"; sha256="07jyawybdrfb7rzxba6mqlz98slv6j1bdqv5lqc06zf5x84r0wwd"; depends=[curl googlePolylines htmltools htmlwidgets jpeg jqr jsonlite magrittr scales shiny viridisLite]; }; goric = derive2 { name="goric"; version="1.1-2"; sha256="004nx29wz191rp0naa73r762bf6lap931lwrxifhz7izl47jzfj0"; depends=[MASS Matrix mvtnorm nlme quadprog]; }; gorica = derive2 { name="gorica"; version="0.1.2"; sha256="0id0xqdw4rwqviym8l0a5gnl5a68ci5f4gn4bhywmzb6fh1nxj33"; depends=[bain lavaan limSolve lme4 MASS mvtnorm quadprog]; }; + gorpiper = derive2 { name="gorpiper"; version="1.0.0"; sha256="1nsdf94lawal250z9y2wsblrf3qypnx3axwzcxbp1pcpv2j0f349"; depends=[cli crayon data_table fs magrittr processx purrr stringr tibble]; }; gosset = derive2 { name="gosset"; version="0.3"; sha256="0symqdgihj3m4a8j0nl1xw9kj3n13k75m1b9dzyhpp60q017nd59"; depends=[BradleyTerry2 ggparty ggplot2 partykit patchwork PlackettLuce psychotools qvcalc tidyr]; }; gotop = derive2 { name="gotop"; version="0.1.2"; sha256="1dvcgz7ha637ixjqmgcwhvl3f9kpx4fdq8im40iz8xwnxqwmrlgx"; depends=[htmltools jsonlite]; }; govStatJPN = derive2 { name="govStatJPN"; version="0.1"; sha256="03sywa7rl5rblvv370mfszz5ngp850qf32yydy1fdx10lv5amrfl"; depends=[]; }; @@ -10398,27 +10148,26 @@ in with self; { goxygen = derive2 { name="goxygen"; version="1.0.3"; sha256="0825zl16ap0k3jqhrjw4hfsw97ils77jmf4yqq347k3bb8i3dm79"; depends=[citation gms pander stringi yaml]; }; gpairs = derive2 { name="gpairs"; version="1.3.3"; sha256="08m1ydrr239vnhjbl47mng3i2w9bqmd8fijrwsraq5ysvn826n27"; depends=[barcode colorspace lattice MASS vcd]; }; gpbStat = derive2 { name="gpbStat"; version="0.3.5"; sha256="1inmh8r02fn48p2f150d3prxlkf61549027vc64a3kyyk5q167ib"; depends=[data_table dplyr magrittr]; }; - gpboost = derive2 { name="gpboost"; version="0.7.3.1"; sha256="0cnswydmsjdxxkkhcrjid77jd782xxi2nsf9qi5h5scjgvnwsicv"; depends=[data_table Matrix R6 RJSONIO]; }; + gpboost = derive2 { name="gpboost"; version="0.7.6.2"; sha256="1fqi4yqibqi4084yh3mzxxbdbsq649xjnrh5dmkf5csn86jg48w4"; depends=[data_table Matrix R6 RJSONIO]; }; gpclib = derive2 { name="gpclib"; version="1.5-6"; sha256="11jjgg74l8hy9jz4jylhriqnzv8jcf12y1bkx22v29z3fhgkwkps"; depends=[]; }; gpg = derive2 { name="gpg"; version="1.2.6"; sha256="17rvi3qff2kanqr3g20dzhn48bfh5sv57g0wsamndzcif7rhjhby"; depends=[askpass curl]; }; - gpindex = derive2 { name="gpindex"; version="0.4.2"; sha256="1id5mmdmjw34y80cnjfxgldd83bzfifh0jk4ym4wp7h3dbpqr8n5"; depends=[]; }; + gpindex = derive2 { name="gpindex"; version="0.4.3"; sha256="1msbp424100agcmrwiirb2i1p5q6n0nfjwysyzh08p8c6c85i4vv"; depends=[]; }; gpk = derive2 { name="gpk"; version="1.0"; sha256="1zfhkqyypb24mhbj2zi9qy3gw0kqxvlp8j5ni3zm7k5rz1bnrygg"; depends=[]; }; gplite = derive2 { name="gplite"; version="0.12.0"; sha256="1cm846jayqvb3xrd3h6pxq6wmww1ghhkr6dffschk0xycix6alw9"; depends=[Matrix Rcpp RcppArmadillo]; }; gplm = derive2 { name="gplm"; version="0.7-4"; sha256="0apvj14nl5qbi4dhhdx5nih5lvjwfcipvr8cyk6xsz4r5gfr2iw4"; depends=[AER]; }; - gplots = derive2 { name="gplots"; version="3.1.1"; sha256="0f8khaymz383w2ksnk80d4kpnvgmdk37pbycpsnl2vabaz11kbpr"; depends=[caTools gtools KernSmooth]; }; + gplots = derive2 { name="gplots"; version="3.1.3"; sha256="05k7a8x62qs5g6mps62vb3mwjdnfjzvjb20yws3x0r2j42g3p1cz"; depends=[caTools gtools KernSmooth]; }; gplsim = derive2 { name="gplsim"; version="0.9.1"; sha256="0zxk8d43za5dv46v2zsi2973jy02si66pnrn5mwnh2l9hxszlnqp"; depends=[mgcv minpack_lm]; }; gpmap = derive2 { name="gpmap"; version="0.1.2"; sha256="1n1r4rda9v4zw8zz4vcagmkkpgirwydhqz36pyq0assxwclnkcz0"; depends=[foreach ggplot2 isotone plyr]; }; gppm = derive2 { name="gppm"; version="0.2.0"; sha256="1n9is3xj52lsck2fiy9j320p2ca6ib36s251i7g3iz99a77b0ahh"; depends=[ggplot2 ggthemes MASS mvtnorm Rcpp rstan]; }; gprofiler2 = derive2 { name="gprofiler2"; version="0.2.1"; sha256="0r0h34b35xzgd9rh55yndn0anxy0z45zdlqa6qfmpn91b6v1bb1g"; depends=[crosstalk dplyr ggplot2 gridExtra jsonlite plotly RCurl tidyr viridisLite]; }; - gps = derive2 { name="gps"; version="1.0"; sha256="1yzmv0zpgnis3v2f7m9j02zxw31kgcw9fny3vrvk4637jzz2ij56"; depends=[Matrix]; }; gptk = derive2 { name="gptk"; version="1.08"; sha256="0fk6c8f8fni4y2n2cbfwywlfyz74xlb8lx25wajsxr2v4x74pa7l"; depends=[fields Matrix]; }; gpx = derive2 { name="gpx"; version="1.1.0"; sha256="0x9b3mnbrim690l4wnyzk47bgywvnw4h4l8qznnx7zkpqib2hn5i"; depends=[lubridate rvest xml2]; }; gqlr = derive2 { name="gqlr"; version="0.0.2"; sha256="0gzhqyrbnz3qjzkr4slryrlfhlaxm474y9fahlj0sb0hvcx68pxj"; depends=[graphql jsonlite magrittr pryr R6]; }; gquad = derive2 { name="gquad"; version="2.1-1"; sha256="19k7cqp2j5vb6m9hxdm951wfjh6nsswb64pdz9g93ypcqrg02wa4"; depends=[ape seqinr]; }; grImport = derive2 { name="grImport"; version="0.9-5"; sha256="0pbzc45wgp0cpycnw0bzn65ckdszzay0zrp7c7ssxdkifp8bai3a"; depends=[XML]; }; grImport2 = derive2 { name="grImport2"; version="0.2-0"; sha256="19q0dd8fpp1g4xf6sg5f8dxybwxjfw553ra6wgjd8b74fzca40m1"; depends=[base64enc jpeg png XML]; }; + graDiEnt = derive2 { name="graDiEnt"; version="1.0.1"; sha256="102nf21a410rsfxqs7dv88kxxr6ya76kyyj95bkjjkn4bz8dykyc"; depends=[doParallel]; }; grabsampling = derive2 { name="grabsampling"; version="1.0.0"; sha256="031a4ak84k2mbhrmjbai3q8qnf2z3d9rp0xra67x74a99av9lzs9"; depends=[extraDistr ggplot2 ggthemes plyr reshape2]; }; - gradDescent = derive2 { name="gradDescent"; version="3.0"; sha256="1jxgvnjw9qk5bkb0fw4kyks4vb9d1933jn79ry0w6956mq2xbb79"; depends=[]; }; grade = derive2 { name="grade"; version="0.2-1"; sha256="085hfvqn880yk19axdjv3z9jr33kls212vs172a8mzhnkallph1r"; depends=[]; }; gradeR = derive2 { name="gradeR"; version="1.0.10"; sha256="1ngfrminhsk3155da0vjmvrk66nbnak8p1ns20cw32qayq6wyrr2"; depends=[callr jsonlite testthat]; }; gradientPickerD3 = derive2 { name="gradientPickerD3"; version="0.1.0.0"; sha256="0b20iqfipr7migwk1fl4lvdf4ghprqivcgmchfshhr8q82hyd1q0"; depends=[htmlwidgets jsonlite shiny]; }; @@ -10447,7 +10196,7 @@ in with self; { graphsim = derive2 { name="graphsim"; version="1.0.2"; sha256="09is0yr17vxr08zb3p240n0aapm63418dzx4ilwq08y8050jqqr7"; depends=[gplots igraph Matrix matrixcalc mvtnorm]; }; graphx = derive2 { name="graphx"; version="1.0"; sha256="1k7vq0j58yskmaqknpkhccrc5n1hh8p2fsw7419r7k6a2c3syj8a"; depends=[cubature docore jpeg magicaxis MASS plotrix png pracma raster sp]; }; grates = derive2 { name="grates"; version="0.3.0"; sha256="0ycgh6fzrsjv3n0wzcaybk686lq074krayz5jfx690iqj5fjkjqi"; depends=[clock ellipsis rlang vctrs]; }; - gratia = derive2 { name="gratia"; version="0.7.2"; sha256="1qj6jnxm12x686qm88vz96y8q5lv8hvwlll6i398agyqaz02nppj"; depends=[dplyr ggplot2 lifecycle mgcv mvnfast nlme patchwork purrr rlang stringr tibble tidyr tidyselect vctrs]; }; + gratia = derive2 { name="gratia"; version="0.7.3"; sha256="1m1jc4qjcxkr6w75hirqwkn2sdrly7ydc3kcd33m4jhjzp7nysb2"; depends=[dplyr ggplot2 lifecycle mgcv mvnfast nlme patchwork purrr rlang stringr tibble tidyr tidyselect vctrs]; }; graticule = derive2 { name="graticule"; version="0.1.6"; sha256="0y8cyhlfm8amdb23cvxy508mpd4d64xgnk1xlr37ss2pqrxdhpir"; depends=[geosphere quadmesh raster sp]; }; gratis = derive2 { name="gratis"; version="1.0.0"; sha256="0dkgbha7ijwvddqxcnfn9gfz29kjzykifbr252qp3qjzkdqw50hi"; depends=[doRNG dplyr foreach forecast GA generics magrittr mvtnorm polynom purrr shiny tibble tsfeatures tsibble]; }; grattan = derive2 { name="grattan"; version="1.9.0.10"; sha256="09724322yrylq9i38j4vb41p4vvfz14h40gjb7r60kkybzpjvkwn"; depends=[assertthat checkmate data_table fastmatch forecast fy hutils hutilscpp ineq magrittr Rcpp zoo]; }; @@ -10457,7 +10206,7 @@ in with self; { grec = derive2 { name="grec"; version="1.4.1"; sha256="1vy3idjvayzx9j9pf5bv5bxycjca3w3c4x4lzzbrdi3c97508sa8"; depends=[imagine raster]; }; greed = derive2 { name="greed"; version="0.6.0"; sha256="0r580lj9v1g774kq0zaw7kfnfzg0qvi2m17ndqlraiipzjjvhiq7"; depends=[cba cli future ggplot2 gridExtra gtable listenv Matrix Rcpp RcppArmadillo RSpectra]; }; greekLetters = derive2 { name="greekLetters"; version="0.0.7"; sha256="0r6c4y6dnd3mm5i7y5cy7xz3w2j7qkfkkvxg9ig138has6115gjj"; depends=[assertthat stringr]; }; - greeks = derive2 { name="greeks"; version="0.5.0"; sha256="0nwpw9iqczm4i2asqsh679s5pd2ia7ifdjaz6mdml1gdjkp85zlk"; depends=[dqrng magrittr Rcpp]; }; + greeks = derive2 { name="greeks"; version="0.6.0"; sha256="1nix4y1wy7crc904kd3kba7ivxn59rmfwdp45q0n1iriqwnbklyr"; depends=[dqrng magrittr Rcpp]; }; greenclust = derive2 { name="greenclust"; version="1.1.0"; sha256="198ix55x8cl5wx09p6ahzy3bvig86mvqf2qywjfilp6b4hnjgk7l"; depends=[]; }; gregRy = derive2 { name="gregRy"; version="0.1.0"; sha256="1b8c8wwp8r2v51ayy7rbav24wfz75z1pylg0p4vsasaw9p06dlbz"; depends=[dplyr magrittr purrr tidyr]; }; gremlin = derive2 { name="gremlin"; version="1.0.1"; sha256="1pi1bksxmjmzclppgbqqg93swf4d72d2mr8bsxv7ndcdjr69xd5r"; depends=[Matrix nlme]; }; @@ -10465,10 +10214,9 @@ in with self; { greport = derive2 { name="greport"; version="0.7-2"; sha256="1p5x4sar88ss8n1m0c73arac10mq4ircjad38kbin6l0nk9z1mh2"; depends=[data_table Formula ggplot2 Hmisc lattice latticeExtra rms survival]; }; greta = derive2 { name="greta"; version="0.4.2"; sha256="1wfb00klhlwmw8c9j3x7m1ip5f56w5xaf1837495xckbzxl6qv54"; depends=[abind callr cli coda future glue parallelly progress R6 reticulate tensorflow yesno]; }; gretel = derive2 { name="gretel"; version="0.0.1"; sha256="1yyj4aing56f2vy0gshxwb623g9idg8k4701v3s53lqn4m2ybazk"; depends=[Rcpp ResistorArray]; }; - gretlR = derive2 { name="gretlR"; version="0.1.0"; sha256="0lpznicpjlvp5kkhmlfr4as7px545k416i3f54900jnc7xa7fm8p"; depends=[knitr]; }; + gretlR = derive2 { name="gretlR"; version="0.1.4"; sha256="094a4hy67j8bk6b0yfvzq5g0ydi69z0m9bqmvdgwv87b3llvpl1q"; depends=[kableExtra knitr magrittr rmarkdown]; }; grex = derive2 { name="grex"; version="1.9"; sha256="0s6nan76rrmh3yhgvzb7pqdrzx2w9px8ay4v9yiib4bamy9wmhpb"; depends=[]; }; greybox = derive2 { name="greybox"; version="1.0.5"; sha256="1bq94b5c8l7dhdkmr9makmc19541bdq5mgwlsfsagc4rnf5j5kfv"; depends=[generics nloptr pracma Rcpp statmod texreg zoo]; }; - greyzoneSurv = derive2 { name="greyzoneSurv"; version="1.0"; sha256="115i0d4fy4p4g4vd419hj9f23hi8cbiyfilgpgmag91ilr1xpcdp"; depends=[Hmisc survAUC survival]; }; grf = derive2 { name="grf"; version="2.1.0"; sha256="06dvcv55bhly1y8a9jkwy3srl1ya7ykqqbxy8l9qyxj7h6fgx902"; depends=[DiceKriging lmtest Matrix Rcpp RcppEigen sandwich]; }; gridBase = derive2 { name="gridBase"; version="0.4-7"; sha256="09jzw4rzwf2y5lcz7b16mb68pn0fqigv34ff7lr6w3yi9k91i1xy"; depends=[]; }; gridBezier = derive2 { name="gridBezier"; version="1.1-1"; sha256="1n5d6svxblcxpzf79px0qjxsydpwjpnfcagnwk35ljinyd0wv68z"; depends=[]; }; @@ -10476,7 +10224,7 @@ in with self; { gridExtra = derive2 { name="gridExtra"; version="2.3"; sha256="0fwfk3cdwxxim7nd55pn7m31bcaqj48y06j7an2k1v1pybk0rdl1"; depends=[gtable]; }; gridGeometry = derive2 { name="gridGeometry"; version="0.3-0"; sha256="0x2b993ffqp8hk0sml6yhmpzy89inv4cjr7f2j60m5jlk55zvx55"; depends=[polyclip]; }; gridGraphics = derive2 { name="gridGraphics"; version="0.5-1"; sha256="12yswy02j3h5wir7m5jnkhpjmb0sa4snn61vjd68i49qwsa6w219"; depends=[]; }; - gridGraphviz = derive2 { name="gridGraphviz"; version="0.3"; sha256="1jz0d6kc8ci55ffm6dns8bhak9xnaq7mg5mpv3fk53lircn7mwl5"; depends=[graph Rgraphviz]; }; + gridGraphviz = derive2 { name="gridGraphviz"; version="0.3-1"; sha256="0yzy7w4bk3rn9yjqy06gzkcs0dla3n49z3v1z0mjikg8cd97d5ni"; depends=[graph Rgraphviz]; }; gridSVG = derive2 { name="gridSVG"; version="1.7-4"; sha256="1jspjn56yrkx98hhs98npzm0k0kwpv8x1hg40kphx5ikhvincxmr"; depends=[jsonlite XML]; }; gridpattern = derive2 { name="gridpattern"; version="0.5.3"; sha256="1jd3959dccz79qadlf6adn6ynl6bssb2p955ykwz2yjzjklpc8ip"; depends=[glue memoise png rlang sf]; }; gridsampler = derive2 { name="gridsampler"; version="0.6"; sha256="0wqpqg9c372sv8zqks6v93gawiyfghw58hn7m8q45dxpqm16ss3k"; depends=[BiasedUrn ggplot2 plyr reshape2 shiny shinyBS shinythemes]; }; @@ -10528,10 +10276,10 @@ in with self; { gsisdecoder = derive2 { name="gsisdecoder"; version="0.0.1"; sha256="1h7a9j4gsdk8nasfkzfizlarx335ra0j0yz98a2000v2qzm2a5qy"; depends=[Rcpp]; }; gsl = derive2 { name="gsl"; version="2.1-7.1"; sha256="118rj9kjx9rzlynvhrly19qz3yxg8jzws35971ssgzrp5lwd367f"; depends=[]; }; gslnls = derive2 { name="gslnls"; version="1.1.1"; sha256="0mgqqw7sicwqvflyq9pdq6jf367ha9f29ik5kbic8zkg3s4xnd55"; depends=[Matrix]; }; - gsloid = derive2 { name="gsloid"; version="0.1.0"; sha256="1ma5si86ynfsis0pnw8hyv6xc4frbkhy5ks03mr0z16gasffkycg"; depends=[]; }; + gsloid = derive2 { name="gsloid"; version="0.2.0"; sha256="1z9fci21870d8z7qsc8hzj3vxlxrr7gxy1vibga3acayxz21lhvs"; depends=[]; }; gsmoothr = derive2 { name="gsmoothr"; version="0.1.7"; sha256="00z9852vn5pj04dhl3w36yk0xjawniay6iifw1i7fd8g98mgspxp"; depends=[]; }; + gson = derive2 { name="gson"; version="0.0.4"; sha256="0qwrskvhdbd3lb6g5p0wfs3gc2xps2v691m56d0bwnginw52ckdz"; depends=[glue jsonlite rlang tidyr]; }; gsrs = derive2 { name="gsrs"; version="0.1.1"; sha256="0x5fll59l000dqszy0gmhsfqgpaljc57j1grqg5c7y1p3vji38in"; depends=[doParallel foreach MASS]; }; - gsrsb = derive2 { name="gsrsb"; version="1.1.1"; sha256="0yjxzc69ihsx5ni6jb4shsvl9vskqlls3gmpckmzx5nsh1l5s5vb"; depends=[ldbounds mvtnorm xtable]; }; gss = derive2 { name="gss"; version="2.2-3"; sha256="0jr45lkpcndg5nynjsfnxn1wwkh4gkhsgv4hlvw6jn2frw0n8c14"; depends=[]; }; gstar = derive2 { name="gstar"; version="0.1.0"; sha256="1582f7jcphb32j3wdc345qa5sgm2xyimlc6r5r5jay7ca5ll8c98"; depends=[dplyr ggplot2 reshape2 xts zoo]; }; gstat = derive2 { name="gstat"; version="2.0-9"; sha256="19m4zcj1qvg6gs8yjr5ijvd6rrv4av5yp5rmhnb88f0m5qn06b0j"; depends=[FNN lattice sp spacetime zoo]; }; @@ -10539,12 +10287,11 @@ in with self; { gsubfn = derive2 { name="gsubfn"; version="0.7"; sha256="00j6b8b6xsx6v370h220x233rpk6asca78165y3d48jpwvwisdc9"; depends=[proto]; }; gsw = derive2 { name="gsw"; version="1.0-6"; sha256="1sqxxbghsii5lph4r9j6w752zd95xxi2hwfbz6d7jxsplwyyfz0l"; depends=[]; }; gsynth = derive2 { name="gsynth"; version="1.2.1"; sha256="1a4s8ghxc5zw295ys8hp22nx93gc1vyakn7r1dcq3ghikh02nzaa"; depends=[abind doParallel doRNG foreach future GGally ggplot2 lfe MASS mvtnorm Rcpp RcppArmadillo]; }; - gt = derive2 { name="gt"; version="0.4.0"; sha256="1sqb2a9amc0xwbm7vshs290aikhy9bd744qyx18j7c45rp6p8v9g"; depends=[base64enc bitops checkmate commonmark dplyr fs ggplot2 glue htmltools magrittr rlang sass scales stringr tibble tidyselect]; }; + gt = derive2 { name="gt"; version="0.5.0"; sha256="1dgsiwk3iam5jldf1lm185ykn7qbavb3k4ssc0fs7di35vznd5ym"; depends=[base64enc bitops checkmate commonmark dplyr fs ggplot2 glue htmltools magrittr rlang sass scales stringr tibble tidyselect]; }; gt4ireval = derive2 { name="gt4ireval"; version="2.0"; sha256="1d567iz57xqszm45l1wq4n2qrrmyz8ssll1vllfmncb9ibbnx4f3"; depends=[]; }; gtWAS = derive2 { name="gtWAS"; version="1.1.0"; sha256="1kbkz0iwc3gfj982m93m2wdr1xm5rhy70k6bdc7kms9ivh5fh6sh"; depends=[]; }; gtable = derive2 { name="gtable"; version="0.3.0"; sha256="1lyncxf2dqdjgw1071cn9c8zwzkz6sldnd5cgmicf70bc726qf7x"; depends=[]; }; - gtcorr = derive2 { name="gtcorr"; version="0.2-1"; sha256="1n56zmyv58jwr95p453jb86j82pdnq57gfc8m15jndjc9p31zl0m"; depends=[]; }; - gte = derive2 { name="gte"; version="1.2-2"; sha256="1x528iakyjhh4j92cgm6fr49a3rdi4cqy28qhsfr2dwvxzxchl6h"; depends=[survival]; }; + gte = derive2 { name="gte"; version="1.2-3"; sha256="0fnrpgfji5f1n8nra0d8xghqgsjil7r2j6xnbmfm7mjafcav4wwk"; depends=[survival]; }; gtfs2gps = derive2 { name="gtfs2gps"; version="2.0-2"; sha256="1ypmvn1i10rqbcl8nwph44dqnmszj9drfivpj1nf8clszfhqazaw"; depends=[data_table furrr future gtfsio lwgeom magrittr pbapply progressr Rcpp readr sf sfheaders terra units]; }; gtfsio = derive2 { name="gtfsio"; version="1.0.0"; sha256="05210ii5b754ryk296knqm3sf9yi5xwvcrq6rb9w71njqgvykwcj"; depends=[data_table zip]; }; gtfsrouter = derive2 { name="gtfsrouter"; version="0.0.5"; sha256="0yxgc4pi0g2wqswvwba0ij263i8b8p6wgsy6hbvklq0gim616shi"; depends=[cli data_table geodist Rcpp]; }; @@ -10553,11 +10300,12 @@ in with self; { gtools = derive2 { name="gtools"; version="3.9.2"; sha256="0lx97yafrms2mjym8rhcq5586z7s1iqgy8qfm4px3xl1yn5qkc83"; depends=[]; }; gtop = derive2 { name="gtop"; version="0.2.0"; sha256="1nvvbf181x0miw3q0r2g0nklz29ljdsd07cazaajfls7pmhi0xw9"; depends=[hts lassoshooting quadprog]; }; gtrendsR = derive2 { name="gtrendsR"; version="1.5.0"; sha256="15jpda67c81j9qsjcx1kffk0my198z7myafsdw91chj7hjzyw6kl"; depends=[anytime curl ggplot2 jsonlite]; }; - gtsummary = derive2 { name="gtsummary"; version="1.5.2"; sha256="1vmzlpn7h68cgxpnsh49qj6xzanhrxa2v3d1f4s96y6kwla0s395"; depends=[broom broom_helpers cli dplyr forcats glue gt knitr lifecycle purrr rlang stringr tibble tidyr]; }; + gtsummary = derive2 { name="gtsummary"; version="1.6.0"; sha256="0lw70g14sj0nfmcq9kj8lyckydaxngxbm1xgan5bgd7i88n4bzfz"; depends=[broom broom_helpers cli dplyr forcats glue gt knitr lifecycle purrr rlang stringr tibble tidyr]; }; guaguas = derive2 { name="guaguas"; version="0.3.0"; sha256="0ngdwg297ndn763vx0qnvcsy5bhsr026hv8hvwgrz5w32mpw252d"; depends=[]; }; guardianapi = derive2 { name="guardianapi"; version="0.1.1"; sha256="17xmmr6pfzhdnmf45jzvk84gbfnmlw1qfv1gqjaw85vgm8b6jn6l"; depends=[dplyr httr jsonlite rlang tibble]; }; guess = derive2 { name="guess"; version="0.1"; sha256="198pxi0yipgm9wccpj3y4a0gkibhyxcmb7v5dz7ipzrk44ha5g6j"; depends=[Rsolnp]; }; guiplot = derive2 { name="guiplot"; version="0.2.0"; sha256="03anbbd5iqmjv12aqgcmii5s0shig0vikz1rhabjrhpz9scabc53"; depends=[DT ggplot2 magrittr R6 rlang shiny svglite]; }; + guix_install = derive2 { name="guix.install"; version="1.0.0"; sha256="0s3wb5781yc43c9zwrn7i87zcbrlx7xr0ms0v9hvgs7qsv02id9j"; depends=[RUnit]; }; gumbel = derive2 { name="gumbel"; version="1.10-2"; sha256="0s9idcrssnl683abwky9zvqylciy0b51z935yfvb2bm8b0b0b4ij"; depends=[]; }; gumboot = derive2 { name="gumboot"; version="1.0.0"; sha256="0c31rxkq08wzycwiwii7q166pzwfbdg35259rymwy0g38pnjnjp6"; depends=[dplyr ggplot2 hydroGOF lubridate ncdf4 reshape2 stringr]; }; gunit = derive2 { name="gunit"; version="1.0.0"; sha256="0vmm47f21n9f334aj38gzrmv1c4sp76njk95ld9gv6fcfxgsipyh"; depends=[magrittr stringr tibble units]; }; @@ -10576,7 +10324,7 @@ in with self; { gwfa = derive2 { name="gwfa"; version="0.0.4"; sha256="0jz82d9lfyd07z0jjlfqzsg7a3vnyz0s1j0rrb5sg9pnvcfjk9qy"; depends=[Rcpp sp]; }; gwpcormapper = derive2 { name="gwpcormapper"; version="0.1.3"; sha256="0d8skx6rxas5qvhg7ykhymrzd6dawj45421vr66r4wi4hbdfjbzx"; depends=[attempt config corpcor crosstalk dplyr DT geodist glue golem htmltools leaflet pkgload plotly processx Rcpp sf shiny shinydashboard shinyjs viridis]; }; gwrpvr = derive2 { name="gwrpvr"; version="1.0"; sha256="0x15nv2pfv99c04lgs6q6hgczarld34xc4aqw9bn179m7j02v6m3"; depends=[]; }; - gwrr = derive2 { name="gwrr"; version="0.2-1"; sha256="1fjk217pimnmxsimqp9sn02nr1mwy3hw3vsr95skbfsd6vdda14d"; depends=[fields lars]; }; + gwrr = derive2 { name="gwrr"; version="0.2-2"; sha256="1pn84056fdrrjq8m13671hn4gvz40z0jsi6r5kv5b82fwzj4g57y"; depends=[fields lars]; }; gym = derive2 { name="gym"; version="0.1.0"; sha256="0vcwzgawqwjsf65hr1mbjkz3px8zsibfkn42jpsg39n13jpfjq8v"; depends=[httr jsonlite]; }; gyro = derive2 { name="gyro"; version="0.2.0"; sha256="14x95hmv1k90xr2wgd2d3lwp87m7kq0k6j7qcp322iy1044mq25m"; depends=[clipr cxhull Morpho purrr rgl rstudioapi Rvcg]; }; h2o = derive2 { name="h2o"; version="3.36.0.4"; sha256="0510yi5d9ziz0ylg33gxr0wlka7fibr7fijas28dhmksvfj7hc6k"; depends=[jsonlite RCurl]; }; @@ -10588,13 +10336,14 @@ in with self; { hNMF = derive2 { name="hNMF"; version="1.0"; sha256="08xn9i24dcykvbcsqzmk33li5fm1alkvcmq2fp0a2ysw4lvwfwqs"; depends=[MASS NMF nnls oro_nifti rasterImage]; }; hR = derive2 { name="hR"; version="0.2.50"; sha256="1zslalsb2zi6b91fb2k1m0vsbsdazls2gnnl7gv2xqvn6kdh4nf6"; depends=[data_table knitr rhandsontable shiny]; }; hSDM = derive2 { name="hSDM"; version="1.4.1"; sha256="1jwqjzr0zpckzh2jpqh17v6ypq4mzn5khlv6p37y59zz8bh9mvxp"; depends=[coda]; }; + haarfisz = derive2 { name="haarfisz"; version="4.5.3"; sha256="1qrp4hwxrj7nf7lrxvhwgi9vky0wbyfd165b8idavj0b2n29s98n"; depends=[wavethresh]; }; hablar = derive2 { name="hablar"; version="0.3.0"; sha256="12gm5n3p2kmjwhkf60n4bjn3lrj7lrs5sgmvads9sfp2ckhaiysk"; depends=[dplyr lubridate purrr]; }; hackeRnews = derive2 { name="hackeRnews"; version="0.1.0"; sha256="0vrdbk4dxbykb3hs35nxkl3s2ds92gs5qz66p85w8j5zjmwbw2x6"; depends=[future_apply httr jsonlite tibble]; }; hacksaw = derive2 { name="hacksaw"; version="0.0.2"; sha256="1ls4l53bsaxyd6lwka9z9sb6ypa2ymbxpfxhsj9k966031jv2vk3"; depends=[dplyr magrittr purrr rlang tibble tidyselect zeallot]; }; hacksig = derive2 { name="hacksig"; version="0.1.2"; sha256="0sc35vyi00r2b3hgn1xw2zffd704adschjwhx0niv5a1l33dxbkp"; depends=[dplyr future_apply rlang tibble tidyr]; }; hadron = derive2 { name="hadron"; version="3.1.2"; sha256="04qd3lb6im5shf24ss88jkskab1rwn7m2d94x0ybbmfcg3l5dhm0"; depends=[abind boot dplyr R6 Rcpp stringr]; }; hagis = derive2 { name="hagis"; version="3.1.3"; sha256="1x2vnym7da8kbj3ifi09z9dlqgprh73n03535gankqzd6pd7n1k4"; depends=[data_table ggplot2 pander]; }; - hakaiApi = derive2 { name="hakaiApi"; version="1.0.1"; sha256="1587rj6k648w653hwljrvvfi5rmi7ar6rh3p3yi6f08x76nl9017"; depends=[dplyr httr R6 readr tibble]; }; + hakaiApi = derive2 { name="hakaiApi"; version="1.0.2"; sha256="0lxqk4cp1s1sm3nbsp74q1bpklmph620c2f1kii97h6yimnq9bi0"; depends=[dplyr httr R6 readr tibble]; }; hal9001 = derive2 { name="hal9001"; version="0.4.3"; sha256="132qnrk6rm2qc5gw17iw61plx1ghnyzi7km8bp36vnqn19x9wj7j"; depends=[assertthat data_table glmnet Matrix origami Rcpp RcppEigen stringr]; }; haldensify = derive2 { name="haldensify"; version="0.2.3"; sha256="071lgx6j92n40bjlrp3khmnavvkla371rkm1ssx20ig5pkay23pw"; depends=[assertthat data_table dplyr future_apply ggplot2 hal9001 matrixStats origami Rdpack rlang rsample scales tibble]; }; halfcircle = derive2 { name="halfcircle"; version="0.1.0"; sha256="1gbqbv3cn8w09i3f2ji3qq0snb4fy9243y12agw686fx46dfmhxs"; depends=[scales]; }; @@ -10605,11 +10354,12 @@ in with self; { hans = derive2 { name="hans"; version="0.1"; sha256="0hh2nlzxs2kj93yb7yfm873m6nymjw5qmkin3qqn3acza6dr0k6q"; depends=[Rcpp]; }; hansard = derive2 { name="hansard"; version="0.8.0"; sha256="00mcy58nhlphb0v0wchbaw1qamm0435s09nxxw6rr5z872rhyf5a"; depends=[dplyr jsonlite lubridate snakecase tibble tidyr]; }; hapassoc = derive2 { name="hapassoc"; version="1.2-8"; sha256="0qs5jl0snzfchgpp6pabncwywxcmi743g91jvjiyyzw0lw85yv4s"; depends=[]; }; + haplo_ccs = derive2 { name="haplo.ccs"; version="1.3.2"; sha256="103i1fxk990drlsdhjrh9p6rp05g7gqzmlqfcdx9a1di1qrhw5qh"; depends=[haplo_stats survival]; }; haplo_stats = derive2 { name="haplo.stats"; version="1.8.7"; sha256="1q2zn72j92bwhcdswk4qqfgzch56p9pcy2xhkd3safvqp3l9rzpw"; depends=[arsenal rms]; }; haploR = derive2 { name="haploR"; version="4.0.6"; sha256="1cg92v64xdzmr5hbjhd11rz6rkdddsxcxkqdgbj5hd1ldqsrjj45"; depends=[DT httr plyr RCurl RJSONIO RUnit tibble XML]; }; haplotyper = derive2 { name="haplotyper"; version="0.1"; sha256="0pcshlh29c4zazhkcq4371kqh9inrbx494y5a1qb1k2c92fkax31"; depends=[]; }; haplotypes = derive2 { name="haplotypes"; version="1.1.2"; sha256="07grdwli0kxnnnf7mg8z7gjpny88h71vf867g50f08yybgb46y70"; depends=[ape network phangorn plotrix sna]; }; - happign = derive2 { name="happign"; version="0.1.3"; sha256="099zmz8dsr6hwb9lxlrkndcq5sfm327n0fpxzqr3cr4f52pgwvmx"; depends=[curl dplyr httr magrittr sf stars tidyr xml2]; }; + happign = derive2 { name="happign"; version="0.1.4"; sha256="0rgphyffj1jyrbxzg9dxfg8vl756hdbc2mdxs6j3zz617xyvnvi7"; depends=[checkmate curl dplyr httr httr2 magrittr sf stars tidyr xml2]; }; happytime = derive2 { name="happytime"; version="0.1.0"; sha256="03iblwb6w2dh9sibfi4nlswidck13hzsn7123838zp4sxfnrp041"; depends=[]; }; hapsim = derive2 { name="hapsim"; version="0.31"; sha256="0jw6iw89d4y8wjy58biv40szp123ql7frz1mmdjdxljmwaby963h"; depends=[MASS]; }; hardhat = derive2 { name="hardhat"; version="0.2.0"; sha256="0a4nq93cmps5xy8h0qsv6xyzrbsz9ka4iwkrvb8m8v10wq7wm5wl"; depends=[glue rlang tibble vctrs]; }; @@ -10622,14 +10372,13 @@ in with self; { hashids = derive2 { name="hashids"; version="0.9.0"; sha256="0233qly4rb1g4znxm9h9h8gskzrjyav6nd26xkdl7990m5hcbcwh"; depends=[]; }; hashr = derive2 { name="hashr"; version="0.1.4"; sha256="10rvq4rvg7fds2ylh21lri4wlvj870bncqq7kma7rf89rg5x1jz6"; depends=[]; }; hasseDiagram = derive2 { name="hasseDiagram"; version="0.2.0"; sha256="1ni4wzj8g6qmpgz1xj62vawkcpm3jr4jqqr1xaxlh5nzbj9fn57h"; depends=[graph Rgraphviz]; }; - haven = derive2 { name="haven"; version="2.4.3"; sha256="0pr9jcdk1r9pi9iz0xm1g5yy5qyjk5r7hh9467abx4kpwx3hzdwm"; depends=[cpp11 forcats hms readr rlang tibble tidyselect vctrs]; }; + haven = derive2 { name="haven"; version="2.5.0"; sha256="1x5g6kjrzcyarbjz91f4aaspx7rb50qs6a9y29mzr3mjq4dk305m"; depends=[cli cpp11 forcats hms lifecycle readr rlang tibble tidyselect vctrs]; }; hawkes = derive2 { name="hawkes"; version="0.0-4"; sha256="1ghwq3icxwmrai3xn9r8cnvlh3z3j18lznhw1bm31h9mkkp2dk0a"; depends=[Rcpp RcppArmadillo]; }; hawkesbow = derive2 { name="hawkesbow"; version="1.0.2"; sha256="0abbarpwlbasgmp0cr8144x2aqkmqf2i99pqd9g9sp9bxbg66056"; depends=[BH nloptr Rcpp RcppArmadillo]; }; hazer = derive2 { name="hazer"; version="1.1.1"; sha256="1d1qj6mamgxlvxq2hjik69zfzackjz5819iss98jf5gdbdngw41x"; depends=[]; }; hazus = derive2 { name="hazus"; version="0.1"; sha256="1c0ahjdy9di1683nk5k4rmr6rhb66523ny039nyv842rgqdy625j"; depends=[reshape2]; }; hbbr = derive2 { name="hbbr"; version="1.1.2"; sha256="09sph4vliyb63pd0abq02ix5wz373r70kgldw44fm279zq4z772h"; depends=[R2jags]; }; - hbim = derive2 { name="hbim"; version="1.0.3"; sha256="1480nydsi2xj7zbfk4zw24mhsjadf83d827kpqzbmn0yh6srp3ps"; depends=[mvtnorm]; }; - hbm = derive2 { name="hbm"; version="1.0"; sha256="0qz28azm91a6pbss1mfc47a21d3q9rs3mmw0kgwc7i2a2m43mysm"; depends=[doParallel foreach Matrix]; }; + hbim = derive2 { name="hbim"; version="1.1"; sha256="1i4fx132xnkb1jp4ikhfibcxp47klsv08vbrj63mqfqr872b29mh"; depends=[mvtnorm]; }; hbmem = derive2 { name="hbmem"; version="0.3-3"; sha256="1rajd5h9gp0rrpc0q0m0fx37mv2n70da3gnfvvnjc5a77mzfyqkp"; depends=[]; }; hbsae = derive2 { name="hbsae"; version="1.2"; sha256="0fg782gxivkkwhqvxf09j1q20f2dqm7bd1y9bp99fy7mg88zp0gn"; depends=[Matrix]; }; hcandersenr = derive2 { name="hcandersenr"; version="0.2.0"; sha256="0r8z8kb9hwvgcsxbd7arbmqclhwlbcjpnf3p9mp5vgyxm84iz515"; depends=[]; }; @@ -10638,7 +10387,7 @@ in with self; { hchinamap = derive2 { name="hchinamap"; version="0.1.0"; sha256="1pia593g50zf3286f9g51slkvrpj1iy7lws9d7a3nqgb2v3yji1y"; depends=[htmlwidgets]; }; hcp = derive2 { name="hcp"; version="0.1"; sha256="0hhcy70g13kclxv733kgiys7qn5bi28abpkli5n2vj0a58ac333m"; depends=[]; }; hctrial = derive2 { name="hctrial"; version="0.1.0"; sha256="19li8i8hx0r3b63q80cnj6pr72rdbmykxq0kcfbn4azq3sdd046y"; depends=[clinfun GenBinomApps]; }; - hdImpute = derive2 { name="hdImpute"; version="0.1.0"; sha256="1n0y3k4rbjq1b2cr13c6axnx2c253ahch6ys53sb5v15xns78954"; depends=[dplyr magrittr missForest missRanger plyr purrr tibble tidyselect tidyverse usethis]; }; + hdImpute = derive2 { name="hdImpute"; version="0.1.1"; sha256="16p5mkapgsnb8mr74388hzrvbmn2njql3v3lk9902mdp565pk9ya"; depends=[cli dplyr magrittr missRanger plyr purrr tibble tidyselect]; }; hda = derive2 { name="hda"; version="0.2-14"; sha256="0azfxyws7yslcqplfddmdp5ngk91j5h7llvrg77yh5z0kkd09j1b"; depends=[e1071]; }; hdbinseg = derive2 { name="hdbinseg"; version="1.0.1"; sha256="0fy9cqrygsnxkb3nxg56md19svrvkbijpxkqfk9p18cj5ibwrq94"; depends=[doParallel foreach iterators Rcpp RcppArmadillo]; }; hdbm = derive2 { name="hdbm"; version="0.9.0"; sha256="0lvaica195chl6bb10wvvr7fbmh8b954fpxcm9r0gyp0d0i2a2w4"; depends=[Rcpp RcppArmadillo]; }; @@ -10652,15 +10401,16 @@ in with self; { hdm = derive2 { name="hdm"; version="0.3.1"; sha256="1kibfc1fc94y1vk06nn0yfvpdzcm30a1jn89lqqfma70x5jpa25s"; depends=[checkmate Formula ggplot2 glmnet MASS]; }; hdme = derive2 { name="hdme"; version="0.3.4"; sha256="0hm41zy4pxqh71bb2ahcnad6484qk4ak43sd43ix1jrqgrqczm5a"; depends=[ggplot2 glmnet Rcpp RcppArmadillo Rdpack Rglpk]; }; hdnom = derive2 { name="hdnom"; version="6.0.0"; sha256="0wszxxfz5xkyqd3xgc9g3d5iwwsfkq9517bgp416h6l31ynxxrwn"; depends=[foreach ggplot2 glmnet gridExtra ncvreg penalized survAUC survival]; }; + hdpGLM = derive2 { name="hdpGLM"; version="1.0.2"; sha256="1kan4nm4kd40xqagkly4pvahra0xsdlr5wyxgm567c22fzwp7khg"; depends=[coda data_table dplyr formula_tools ggjoy ggplot2 ggpubr ggridges Hmisc isotone LaplacesDemon magrittr MASS MCMCpack mvtnorm purrr questionr Rcpp RcppArmadillo rprojroot stringr tibble tidyr tidyverse]; }; hdpca = derive2 { name="hdpca"; version="1.1.5"; sha256="0xcakpnp363lz98y3h87p1yhj0gs3f94gx2i8kz4mcizn1ll5xbd"; depends=[boot lpSolve]; }; hdrcde = derive2 { name="hdrcde"; version="3.4"; sha256="16qlk44cjvn2s0vzaf915df65ksdx20dbxhy7fpdqins46hccha3"; depends=[ash ggplot2 KernSmooth ks locfit RColorBrewer]; }; hds = derive2 { name="hds"; version="0.8.1"; sha256="1smg5ixrl7f2x3wn7s5i26dyadn5sigpf4jsk236z1bhnz617ax4"; depends=[survival tensor]; }; healthcareai = derive2 { name="healthcareai"; version="2.5.0"; sha256="05qsmgrnaagnavlrs9c6j01j9c3lcc9j7cmbrx3y6lb6pf4zs195"; depends=[caret cowplot data_table dplyr e1071 generics ggplot2 glmnet lubridate MLmetrics purrr ranger recipes rlang ROCR stringr tibble tidyr xgboost]; }; healthfinance = derive2 { name="healthfinance"; version="0.1.0"; sha256="163zhdd5mqp0q872dmr3xzw2ppapnwp46rr7vkkfnglz635nxvpz"; depends=[ggplot2 lubridate readr scales shiny tibble]; }; - healthyR = derive2 { name="healthyR"; version="0.1.8"; sha256="0phqlf38g38rrvp1h8cvcfqrnb4bik2ndhsli5nkhlhywh4azjfm"; depends=[cowplot dplyr ggplot2 ggrepel lubridate magrittr plotly purrr rlang scales sqldf stringr tibble tidyr timetk writexl]; }; - healthyR_ai = derive2 { name="healthyR.ai"; version="0.0.6"; sha256="0vpry1ixnwh6nfjx36xk6pql57ym84xzw5jmanzbnbsf8jnnq1zy"; depends=[broom dplyr forcats ggplot2 ggrepel h2o magrittr purrr recipes rlang tibble tidyr]; }; + healthyR = derive2 { name="healthyR"; version="0.1.9"; sha256="0nrn9n9p0336syx4kik2hliknydpfjr19gkql7vkrrkyldzr3xrs"; depends=[cowplot dplyr ggplot2 ggrepel lubridate magrittr plotly purrr rlang scales sqldf stringr tibble tidyr timetk writexl]; }; + healthyR_ai = derive2 { name="healthyR.ai"; version="0.0.7"; sha256="1r061j4axznypfqxir988w1l40zr1hflj6icaiyv60ns3bi34p95"; depends=[broom dials dplyr forcats ggplot2 ggrepel h2o magrittr modeltime parsnip purrr recipes rlang tibble tidyr tune workflows yardstick]; }; healthyR_data = derive2 { name="healthyR.data"; version="1.0.1"; sha256="18b7aqdy9a0ldf2ib2d0a07k6bfmgdp61y8hl8yl19v35nqj6dvh"; depends=[]; }; - healthyR_ts = derive2 { name="healthyR.ts"; version="0.1.8"; sha256="09p3bc4ajdhr13k8hgwa6mha9p6l5p61fq4sgki0w6f2g2gcqrkq"; depends=[cowplot dplyr earth forcats ggplot2 lubridate magrittr modeltime parsnip plotly purrr recipes rlang stringi tibble tidyquant tidyr timetk workflowsets]; }; + healthyR_ts = derive2 { name="healthyR.ts"; version="0.1.9"; sha256="0k3lv8h2929b2kv5rgwfqsj5j3hjlw5qv978rhxfgl6gsjlz2bgp"; depends=[cowplot dplyr earth forcats ggplot2 hardhat lubridate magrittr modeltime parsnip plotly purrr recipes rlang stringi tibble tidyr timetk workflowsets]; }; healthyverse = derive2 { name="healthyverse"; version="1.0.2"; sha256="1ngxadwpd62lx6y41szqckv1f2j8ja1hy4qx08vccpjbmlcg8v1b"; depends=[cli crayon dplyr healthyR healthyR_ai healthyR_data healthyR_ts magrittr purrr rlang rstudioapi tibble TidyDensity]; }; heapsofpapers = derive2 { name="heapsofpapers"; version="0.1.0"; sha256="1b88ff4j6rh0qif43iyb12wipkkjmp5qx33qfzgffr5m54df4kfy"; depends=[aws_s3 curl dplyr fs magrittr rlang scales]; }; heatex = derive2 { name="heatex"; version="1.0"; sha256="0c7bxblq24m80yi24gmrqqlcw8jh0lb749adsh51yr6nzpap6i9n"; depends=[]; }; @@ -10669,7 +10419,6 @@ in with self; { heatmapFlex = derive2 { name="heatmapFlex"; version="0.1.2"; sha256="0va8ac2wf1mzm6zamhfpid3xkm7310c6b695c5wbc705nwijnd9q"; depends=[Biobase Heatplus RColorBrewer]; }; heatmaply = derive2 { name="heatmaply"; version="1.3.0"; sha256="1w8yyzb68laxd4zxycvgmpqj5wnyidjgv1vbzbxndp9p92f2cp8a"; depends=[assertthat colorspace dendextend egg ggplot2 htmlwidgets magrittr plotly RColorBrewer reshape2 scales seriation viridis webshot]; }; heatwaveR = derive2 { name="heatwaveR"; version="0.4.6"; sha256="172qg8dgyn5lbwmyq8dxdccxr4aqaq6iixn5dqb4fy99ahgdbhyv"; depends=[data_table dplyr ggplot2 lubridate plyr Rcpp RcppArmadillo RcppRoll tibble]; }; - heavy = derive2 { name="heavy"; version="0.38.196"; sha256="05k788ynw9fhhmjydzp8dbk1vhl44j2rz2shqwn02i40jmwdvwrk"; depends=[]; }; heddlr = derive2 { name="heddlr"; version="0.6.0"; sha256="0ixmcgvfbq4hi3wv1fyzpwacmxmixsw5yq6mq5xygk6ji03m1v23"; depends=[rlang utf8 yaml]; }; hedgehog = derive2 { name="hedgehog"; version="0.1"; sha256="1mvjnm2zlc4pvw9vnhxr0dj1g1sfqvlrnnhcipzfbvr147yan9l5"; depends=[rlang testthat]; }; heemod = derive2 { name="heemod"; version="0.14.4"; sha256="0pd56frksjz8b7fm2mdk87ln7949sasg1slyh9p22w58zb9819jx"; depends=[dplyr ggplot2 lazyeval memoise mvnfast plyr pryr purrr rlang tibble]; }; @@ -10701,10 +10450,10 @@ in with self; { hexSticker = derive2 { name="hexSticker"; version="0.4.9"; sha256="0d9sz2cshn4lq18kd9fkgvjm3v29h0k22b6228rq2q3zhxi97ra0"; depends=[ggimage ggplot2 hexbin showtext sysfonts]; }; hexView = derive2 { name="hexView"; version="0.3-4"; sha256="01hiqyibsd4as7jcklzg09pl12la341mg561vn16z4jzdarfvkfc"; depends=[]; }; hexbin = derive2 { name="hexbin"; version="1.28.2"; sha256="0bbhs5pwxh474w62sq6gqvih7habancxng9wd4f2rgn6lv9zhhb2"; depends=[lattice]; }; - hextri = derive2 { name="hextri"; version="0.6"; sha256="05rvigi225npncbr1brc6apc7gsg9a5jzcbmhvflwp3hbcg3hn02"; depends=[FNN hexbin]; }; + hextri = derive2 { name="hextri"; version="0.9.17"; sha256="04kk1a029i1rz617s9i3jvpnxillc3k3b7g3nrbsbi37ik6qk5r4"; depends=[FNN hexbin]; }; hflights = derive2 { name="hflights"; version="0.1"; sha256="1rb6finck13i6949i6hsgfk90q4ybxh1m3is2mlw2m6087bpzfbd"; depends=[]; }; hfr = derive2 { name="hfr"; version="0.5.0"; sha256="0wq48x22xmshw4d3i3n0q47h2y9h646fw578kahvfhh9ksxbpf94"; depends=[dendextend quadprog RColorBrewer RcppArmadillo]; }; - hglasso = derive2 { name="hglasso"; version="1.2"; sha256="1qq41ma33wz7qjs5zx72yvngpsiq62z9sd6d5hvvl83brq0fcr4b"; depends=[fields glasso igraph mvtnorm]; }; + hglasso = derive2 { name="hglasso"; version="1.3"; sha256="15sq5fk7iicglpyxdkh44mg112zij05ic4x3snhqyc2lx1hvp7cy"; depends=[fields glasso igraph mvtnorm]; }; hglm = derive2 { name="hglm"; version="2.2-1"; sha256="1lyxkvqzfll1qrz5c2km9ikhq0dm63x39by4vc1nmkd24yza93nc"; depends=[hglm_data MASS Matrix]; }; hglm_data = derive2 { name="hglm.data"; version="1.0-1"; sha256="0mw1s0kahsh9jmwkxysfy5f7vbld7mpzmdnnww6im5h21jhnczx2"; depends=[MASS Matrix sp]; }; hgm = derive2 { name="hgm"; version="1.20"; sha256="0sfyq81r4yrdw8508jsplkxb8kj1jy8dx9v3h1fvmwx3frrh3vm6"; depends=[deSolve]; }; @@ -10715,7 +10464,6 @@ in with self; { hhi = derive2 { name="hhi"; version="1.2.0"; sha256="1yl52c3nqdi8v60sr01l0vv8359803dm2i4c9ifazgj3h3a4h0yp"; depends=[ggplot2]; }; hhsmm = derive2 { name="hhsmm"; version="0.3.1"; sha256="1jxic441bg7g15fv4jvl6xfrl61781s7p7x05wcfqayia82c76vr"; depends=[CMAPSS cpr magic MASS mice mvtnorm progress psych Rcpp Rdpack splines2]; }; hht = derive2 { name="hht"; version="2.1.4"; sha256="0i4rjr507k555pvf7q6y6b3df56rjc6igrv8dk0mhyfws49jw9m9"; depends=[EMD fields spatstat spatstat_core spatstat_geom spatstat_linnet]; }; - hiPOD = derive2 { name="hiPOD"; version="1.0"; sha256="1i15ickz2s0kffh99qq30pl5hsl0lbj0kp55jnbv4x72hndzhmla"; depends=[rgl]; }; hibayes = derive2 { name="hibayes"; version="1.0.1"; sha256="0ah81gwbsz2j466jwk39w6h4fi02ivwxi9ppir9svyf1nxig409j"; depends=[BH bigmemory Matrix Rcpp RcppArmadillo RcppProgress]; }; hiddenf = derive2 { name="hiddenf"; version="2.0"; sha256="0shc1kfiq527mkc5i97zcm51hsvknnhjg7dyfvbfqyk145v6sz00"; depends=[]; }; hier_part = derive2 { name="hier.part"; version="1.0-6"; sha256="15wlpb2rsn6am8galsbjiy4psp78nlv1x2hz3cnqbwj508w6gsj0"; depends=[betareg gtools MASS]; }; @@ -10724,17 +10472,14 @@ in with self; { hierSDR = derive2 { name="hierSDR"; version="0.1"; sha256="164l7gw5bkg09mfs0rnqwfsbgr4mppc0skbmqk2d98mcvvmmcwd7"; depends=[lbfgs locfit MASS Matrix numDeriv optimx]; }; hierarchicalDS = derive2 { name="hierarchicalDS"; version="3.0"; sha256="16d6l3y21nhynfjk4swp3pnjr6vhcxq369djgxz907zsjby35gkz"; depends=[coda ggplot2 Matrix mc2d MCMCpack mvtnorm rgeos truncnorm xtable]; }; hierarchicalSets = derive2 { name="hierarchicalSets"; version="1.0.2"; sha256="0m5mnx1zmiscj0k1gnljr7fla4y1qhysi32a8q9jlah2q7grk7x9"; depends=[ggdendro ggplot2 gtable MASS Matrix RColorBrewer Rcpp scales]; }; - hierband = derive2 { name="hierband"; version="1.0"; sha256="0d95hrgkd8b5sww3wsgs6v9zg9pm71ick8x8kj8d6vyib350h6yn"; depends=[]; }; hierbase = derive2 { name="hierbase"; version="0.1.2"; sha256="1rsyjlwa8x5n83ymwv7qm373k3y7jfp64g717xd1jmn9vrmm052b"; depends=[glmnet hdi SIHR]; }; - hierfstat = derive2 { name="hierfstat"; version="0.5-10"; sha256="1p4vlna185sa3b5xjbysiqxcj9aa5s7dmxy41hg79vlqdivf874r"; depends=[ade4 adegenet gaston gtools]; }; - hiertest = derive2 { name="hiertest"; version="1.1"; sha256="17maf1w4vkqknxff3f00fzv136j3dbbigyzl4vq4sln9j27w10r3"; depends=[]; }; - highD2pop = derive2 { name="highD2pop"; version="1.0"; sha256="1s4v6m2d3vzvxsgmjzczv1zj3kv3ygvv6gbkkbjwsdhkvc1rdmf0"; depends=[fastclime]; }; + hierfstat = derive2 { name="hierfstat"; version="0.5-11"; sha256="0nyb5091lr8ma9vydbssyx9503601rynlrbldv98mmrmh74h6v41"; depends=[ade4 adegenet gaston gtools]; }; highDmean = derive2 { name="highDmean"; version="0.1.0"; sha256="0z81iw1nb8y4pvmhk8ay9pq4kvqxwxwv8q6p47hy8s2b465sfy1f"; depends=[]; }; highMLR = derive2 { name="highMLR"; version="0.1.0"; sha256="1pb3fgycbrvzbd27p9hmq7wq9b8dbdb3r4q81nr9nnk2d5v00nai"; depends=[coxme dplyr gtools missForest mlr3 mlr3learners mlr3proba survival tibble]; }; highSCREEN = derive2 { name="highSCREEN"; version="0.4"; sha256="1nd4jayfhz89kpk4i7s3n3wlza1ik4w3gspplnjmfz951f8i3wlg"; depends=[gplots]; }; highTtest = derive2 { name="highTtest"; version="1.2"; sha256="14y2dsdkalrxcj52rsj2aw6b8sdhw2hcvlwz0bmvihj19j6xhaw4"; depends=[]; }; highcharter = derive2 { name="highcharter"; version="0.9.4"; sha256="02yyzfhzgkrp8hgdp2gyqrrvxzh9wqn3c90lyd9nlavn4qn4789z"; depends=[assertthat broom dplyr htmltools htmlwidgets igraph jsonlite lubridate magrittr purrr quantmod rjson rlang rlist stringr tibble tidyr xts yaml zoo]; }; - highfrequency = derive2 { name="highfrequency"; version="0.9.2"; sha256="02d4ixw74yvzhrkxivi6cm9kahyhgsgzbrngqg7x0ixzli272h63"; depends=[data_table numDeriv quantmod Rcpp RcppArmadillo RcppRoll robustbase Rsolnp sandwich xts zoo]; }; + highfrequency = derive2 { name="highfrequency"; version="0.9.4"; sha256="09izxdyimy8anrd6rvl7qm1spa1ss15q7v6h721byshyjvns12iz"; depends=[data_table numDeriv quantmod Rcpp RcppArmadillo RcppRoll robustbase Rsolnp sandwich xts zoo]; }; highlight = derive2 { name="highlight"; version="0.5.0"; sha256="1shar4y07wyixg0ichdrn2xhgwkl3mv2pxkalqzisc69w605b3hf"; depends=[]; }; highlightHTML = derive2 { name="highlightHTML"; version="0.2.5"; sha256="0j3zrvil7k5wfsbgfj2b4nbx77qsj3b4makv5angcf8s59p7q80r"; depends=[]; }; highmean = derive2 { name="highmean"; version="3.0"; sha256="1lq7z0l1737j4wvsy7951405afylyywp7vf2i7girzh459fdfzpc"; depends=[MASS mnormt mvtnorm]; }; @@ -10742,11 +10487,11 @@ in with self; { highriskzone = derive2 { name="highriskzone"; version="1.4.7"; sha256="1ylbmk6a2d6prwips2da6syzxpbfhda93abdw98pjj658p7l3m0r"; depends=[deldir fields ks maps Matrix mvtnorm rgeos spatstat spatstat_core spatstat_geom spatstat_random]; }; higlasso = derive2 { name="higlasso"; version="0.9.0"; sha256="09d500jsxlrv658i90xnb2wj1ad89v1iwb6y7vascyvg3cff104h"; depends=[gcdnet gglasso purrr Rcpp RcppArmadillo]; }; higrad = derive2 { name="higrad"; version="0.1.0"; sha256="0q9av8qyvmvgy6a3l7svcmbkjjgnp4iny1cld4g3qsbaz3yp3jaj"; depends=[Matrix]; }; + hilbert = derive2 { name="hilbert"; version="0.2.1"; sha256="1vw1rn5adnqi99v5w47jmqx35rqv0slas3ldw7g34il1krz9xhms"; depends=[cpp11]; }; hilbertSimilarity = derive2 { name="hilbertSimilarity"; version="0.4.3"; sha256="1251df3q7c7c69f8q9y9bxj210bk2dh80c8ca4s58isf0hr2x7zp"; depends=[entropy Rcpp]; }; hildareadR = derive2 { name="hildareadR"; version="0.2.0"; sha256="0hay1r6lxnyzjp97456d9wra7myrmifyx8cywzc85wclm355yc9b"; depends=[dplyr haven]; }; hillR = derive2 { name="hillR"; version="0.5.1"; sha256="0yz2f3zz28k36f6afya5cg7k6kvyz6nzafr53pw6liy086nfrb9n"; depends=[ade4 ape FD geiger plyr tibble]; }; hilldiv = derive2 { name="hilldiv"; version="1.5.1"; sha256="1jp4xvrpqd575y2x0i73s0bq708bzi6gdhqgz85bia6d5kf05lq9"; depends=[ape data_table FSA geiger ggplot2 ggpubr qgraph RColorBrewer scales vegan]; }; - hillmakeR = derive2 { name="hillmakeR"; version="0.2"; sha256="1baynibgn4xqmpsxna8irggxvdc484mq5nza00rwg58vh1bc7wzq"; depends=[]; }; hillshader = derive2 { name="hillshader"; version="0.1.0"; sha256="12phdpkjc4gyk9ri33x86dzxb03llhpqf43vin9ssfr23sbblnqh"; depends=[raster rayshader scales]; }; himach = derive2 { name="himach"; version="0.2.3"; sha256="0gc9ii6wqr2calrqgma7dc9vrp0fqxq019cr1ims06h55c5qzand"; depends=[cppRouting data_table dplyr geosphere ggplot2 lwgeom purrr s2 sf tidyr]; }; hindex = derive2 { name="hindex"; version="0.2.0"; sha256="01mcd2br33qqkfcyxl584f3l6kyb2cgzpd207p0mynzdaallgxgc"; depends=[foreach ggplot2 purrr]; }; @@ -10766,15 +10511,13 @@ in with self; { hkdatasets = derive2 { name="hkdatasets"; version="1.0.0"; sha256="1a594fgwc5bvimwp5m2zpb6pjy4iavcylxdmsq3hrnh9ll5g5582"; depends=[fst]; }; hkevp = derive2 { name="hkevp"; version="1.1.4"; sha256="01m5yywi4vjnwhdayaqaqcp5lz70mllj5ifnwdb4c60wm9aby9pm"; depends=[Rcpp RcppArmadillo]; }; hkex_api = derive2 { name="hkex.api"; version="0.1"; sha256="0hqwihlrppchpaz2yaq92gf779yi5k8n7sxy1kbpjxs2qc18xvj2"; depends=[httr RCurl XML]; }; - hlaR = derive2 { name="hlaR"; version="0.1.2"; sha256="1n2spkdd41c37rpa6978dlyml3r2rmmjly2ga451ri678s53l7hm"; depends=[devtools dplyr here purrr readr readxlsb reshape2 schoolmath stringr tibble tidyr tidyverse usethis]; }; + hlaR = derive2 { name="hlaR"; version="0.1.3"; sha256="102gz0dj3h1lbjmjay17qpxirk2z5a6w7f9sb6zj2i2mrbdvwx8y"; depends=[devtools dplyr here janitor purrr readr readxlsb reshape2 schoolmath stringr tibble tidyr tidyverse usethis]; }; hlidacr = derive2 { name="hlidacr"; version="0.2.0"; sha256="02l86bvb4w8wdq9mk9zh5wkf5i5y5jlgld0ciz851p5ra70c395p"; depends=[curl glue httr jsonlite purrr stringr urltools usethis]; }; hmclearn = derive2 { name="hmclearn"; version="0.0.5"; sha256="0zalvgnibd1kygryqcah5d008y6a0nxpy61yyiqsriw89r01jyjk"; depends=[bayesplot MASS mvtnorm]; }; hmeasure = derive2 { name="hmeasure"; version="1.0-2"; sha256="0l4nlny532kddiaa1nmgd37971whhwzb54mb1pvbwax7fsg6hmhw"; depends=[]; }; - hmgm = derive2 { name="hmgm"; version="1.0.3"; sha256="12gaz2pi9ny7y772yzrfvl02p3n89cq1l5dzmcksd172gv9ayyz1"; depends=[binaryLogic glmnet MASS Matrix nat Rcpp rgl]; }; - hmi = derive2 { name="hmi"; version="1.0.0"; sha256="0fjcw13mkxza6nkq3fhp188ga1sjspq1sc6wjm4hy13xh7vdjpqq"; depends=[boot broom_mixed coda linLIR lme4 MASS Matrix MCMCglmm mice msm mvtnorm nlme nnet ordinal pbivnorm rlang tmvtnorm]; }; + hmer = derive2 { name="hmer"; version="1.0.0"; sha256="067lpfm2f07slmwz4j2jqznr52qkddd76hn96am675z313l6k6lq"; depends=[GGally ggplot2 isoband lhs MASS mclust mvtnorm purrr R6 rlang stringr tidyr viridis]; }; hmlasso = derive2 { name="hmlasso"; version="0.0.1"; sha256="0ydcyz9pw30ji8ghrvkgcbmp27d661vajl97b8cwis52605a3gfx"; depends=[BH MASS Matrix Rcpp RSpectra]; }; hmm_discnp = derive2 { name="hmm.discnp"; version="3.0-7"; sha256="09nr7hmb7iwn8pk6lkcjagkyql53hh68245chx3xxlbvjxy8l471"; depends=[nnet]; }; - hmma = derive2 { name="hmma"; version="1.1.0"; sha256="1qsvczqq44h46z0nfblv4rarbg64imz8m0jhxdhva27kbzdvqf97"; depends=[bnlearn graph MCMCpack mhsmm Rgraphviz]; }; hmmm = derive2 { name="hmmm"; version="1.0-4"; sha256="1sbr85lcmcw3lv0ygqwfbarr91dp3br1xnlygy49145cvl93nfci"; depends=[MASS mvtnorm nleqslv quadprog]; }; hmmr = derive2 { name="hmmr"; version="1.0-0"; sha256="1m0jmw0i66hm5z5rycvpdmasq8zhgsz91km491n0n923mm480hmh"; depends=[depmixS4]; }; hms = derive2 { name="hms"; version="1.1.1"; sha256="0qlh4s1g9rbm6c3s906dhw3xsz28m8fg6cyynlkhvis533dk0pvb"; depends=[ellipsis lifecycle pkgconfig rlang vctrs]; }; @@ -10792,12 +10535,11 @@ in with self; { hommel = derive2 { name="hommel"; version="1.6"; sha256="1lvlazvvgmaqbawalgry1a59qmqxv2qy9g0ijhpcawwv2cfxmdja"; depends=[Rcpp]; }; homologene = derive2 { name="homologene"; version="1.4.68.19.3.27"; sha256="0d7wxisk0vqk1n165v1i19bc02zv78h5r5d3jqai5y6nkmwn01sh"; depends=[dplyr magrittr purrr R_utils readr]; }; homomorpheR = derive2 { name="homomorpheR"; version="0.2-2"; sha256="1iahq16nswlc3b87598206xdp24bg9v8acyjp1jivybl3fr4k3pq"; depends=[gmp R6 sodium]; }; - homtest = derive2 { name="homtest"; version="1.0-5"; sha256="1lnqlg3dwq174ic6dbjllysw5fjy5kvvgbl6gvabjmcs66z27fp0"; depends=[]; }; hoopR = derive2 { name="hoopR"; version="1.5.0"; sha256="1ndw76a733q225r67w6qxhkbbz5f4bll7bxfl3psy58z60qg02dh"; depends=[cli data_table dplyr furrr future glue janitor jsonlite magrittr progressr Rcpp RcppParallel rlang rvest stringr tidyr usethis]; }; hopbyhop = derive2 { name="hopbyhop"; version="3.41"; sha256="1dh502mjrk9dlqikn0ak4gh2dw9nrnp3zrz8j1xwa9cjn37al2wh"; depends=[ggplot2 pastecs]; }; hopit = derive2 { name="hopit"; version="0.10.3"; sha256="1dhfsbf4j2acncw0ypg44lkphhznafd80880jxfl6jdhd9fg2nn8"; depends=[MASS Matrix Rcpp RcppEigen Rdpack survey]; }; hopkins = derive2 { name="hopkins"; version="1.0"; sha256="06fdks0jxv47d9xsyxzx2fdrbjw40dqj26qfkv5wdlcyv3lcfc4y"; depends=[donut pdist RANN]; }; - hornpa = derive2 { name="hornpa"; version="1.0"; sha256="0pfvk2jkrwgvshgq9g55qijgpjh0677rpbya0r8759n92v3axbp4"; depends=[]; }; + hornpa = derive2 { name="hornpa"; version="1.1.0"; sha256="0b4dxzibngdiqj00ma2nzimbknfkscpq1ncalm9dc6pjwrmq43q1"; depends=[]; }; horseshoe = derive2 { name="horseshoe"; version="0.2.0"; sha256="1qhkw6agkhpmgf27429c3kqqhbvpg61l0dvfxg7n564y2ha76r3c"; depends=[]; }; horseshoenlm = derive2 { name="horseshoenlm"; version="0.0.6"; sha256="1m3n12wgmb1wnxc40bzpna261das8hy47l7hmvhfbzhmp7v803v5"; depends=[msm survival]; }; hospitals = derive2 { name="hospitals"; version="0.1.0"; sha256="03bg0fl1wpc7rxlzxgjdk48x8zsd7lv64dcs0fbg573wkhp02vim"; depends=[magrittr stringr tibble]; }; @@ -10810,10 +10552,10 @@ in with self; { howmany = derive2 { name="howmany"; version="0.3-1"; sha256="045ck8qahfg2swbgyf7dpl32ryq1m4sbalhr7m5qdgpm62vz8h7f"; depends=[]; }; hpa = derive2 { name="hpa"; version="1.2.1"; sha256="0z60j7ydbifwsp2flksgswnw3zrr0gamkng4nrbbsz7zxmagsxml"; depends=[Rcpp RcppArmadillo RcppParallel]; }; hpackedbubble = derive2 { name="hpackedbubble"; version="0.1.0"; sha256="1br7q4958f1zgvisglsaf41nz2ahnqi3bzazvlfnmk3nq03cb1ri"; depends=[htmlwidgets]; }; - hpcwld = derive2 { name="hpcwld"; version="0.5"; sha256="17k4mw41gygwgvh7h78m0jgzh1bivrvrsr8lgxxw3sbkw88lwb40"; depends=[multicool partitions]; }; + hpcwld = derive2 { name="hpcwld"; version="0.6-4"; sha256="15nd95ypg9s9lrfgm9sr5ablcn6741ygf3sngcbjjkbmgm27m5b8"; depends=[]; }; hpiR = derive2 { name="hpiR"; version="0.3.2"; sha256="0gz9ngnjgys7hzijsma2iyywwiv7vjar5gls28ds11wq8pmsv96n"; depends=[dplyr forecast ggplot2 gridExtra imputeTS lubridate magrittr MASS pdp plyr purrr ranger rlang robustbase zoo]; }; hpoPlot = derive2 { name="hpoPlot"; version="2.4"; sha256="176bf93gjwbi2z7nz81w4aycwax6f7jxvs3236zrmf0f0f4m7bkc"; depends=[functional magrittr Rgraphviz]; }; - hqmisc = derive2 { name="hqmisc"; version="0.1-1"; sha256="0jcy2hb3dmzf9j4n92aq7247mx9w7n30wpsx0dkchqnjwlqwwncw"; depends=[]; }; + hqmisc = derive2 { name="hqmisc"; version="0.2-1"; sha256="10n5p5n9nw713ihz1mfm5d375msf29x68c3gk5l5slpzfk8cfh2n"; depends=[]; }; hqreg = derive2 { name="hqreg"; version="1.4"; sha256="1j6zp3rmpjx409vm7kq159mlawg87wsq0ypdkan34yxxv9py2jmi"; depends=[]; }; hrIPW = derive2 { name="hrIPW"; version="0.1.3"; sha256="1ns0mxkcfs2jva4wsbqkybgasgyxvxlcfxayky6lrfhic8jxvmg4"; depends=[survival]; }; hrbrthemes = derive2 { name="hrbrthemes"; version="0.8.0"; sha256="057h60b5p53dcyjyfwlgjc1ry968s9s64dw78p443w8717zk7zpc"; depends=[extrafont gdtools ggplot2 htmltools knitr magrittr rmarkdown scales]; }; @@ -10824,9 +10566,6 @@ in with self; { hsdar = derive2 { name="hsdar"; version="1.0.4"; sha256="1z38qmy8jqzy52qwpbsr4xgdby2c73144bxrn0ywyqdgjz1b6g8j"; depends=[Boruta caret raster rgdal signal]; }; hse = derive2 { name="hse"; version="0.0-28"; sha256="14w09wm1kk7b4q8cl5cwjfqvzm2fb4ls8qjw6i0l54184fmw4dah"; depends=[]; }; hsem = derive2 { name="hsem"; version="1.0"; sha256="0dgp65isbfmw0q4sn36l5226sf6vrl7mvn7gn50xvgybh0l6y7vk"; depends=[boot Matrix mvtnorm numDeriv]; }; - hsicCCA = derive2 { name="hsicCCA"; version="1.0"; sha256="1d4lkjrihwhl3jrsj7250ccd90nfwpllyavc3mp15fhcy2jnjci8"; depends=[]; }; - hsm = derive2 { name="hsm"; version="0.2.0"; sha256="066shjikqrrkxpnra4zknax1a0sk5nx9ms1br58vwqqvqq479rym"; depends=[]; }; - hsmm = derive2 { name="hsmm"; version="0.4"; sha256="1fh8c5kfv4brygdq6bfkrhrhkm99mxl4ljb1mhp9nf2bjlla11mc"; depends=[mvtnorm]; }; hsphase = derive2 { name="hsphase"; version="2.0.2"; sha256="1b62k9sc6604djy37anslvqjpbrj9wsc9mvnfbrnmhqf4g0nnpdq"; depends=[Rcpp RcppArmadillo snowfall]; }; hsrecombi = derive2 { name="hsrecombi"; version="0.4.2"; sha256="1d2dah63gl8gfzjz9rq9d3d62fqc3q6p0yc81rbx543220q3ll7v"; depends=[curl data_table dplyr hsphase quadprog Rcpp rlist]; }; hsstan = derive2 { name="hsstan"; version="0.8.1"; sha256="0k7sqwx73zid68ji9l2hfihqdlk3rdpid81pp8g3fmi8dpvrzkms"; depends=[BH ggplot2 loo pROC Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; @@ -10843,9 +10582,9 @@ in with self; { htmlwidgets = derive2 { name="htmlwidgets"; version="1.5.4"; sha256="1hgz8sx8xrvfcdwa4q15k942w4qsqg8lyxbbf7qyfzbi807wcgqs"; depends=[htmltools jsonlite yaml]; }; htree = derive2 { name="htree"; version="2.0.0"; sha256="15bi5c2p4aghihp3k12s78447j2x9hbsaq56b5lc8jmd1vf0jdwb"; depends=[]; }; hts = derive2 { name="hts"; version="6.0.2"; sha256="06mmxdm7a2fb1r4mb2x12b00rnkaxlrmlkv5yizr3yixmn4is9wb"; depends=[forecast Matrix Rcpp RcppEigen SparseM]; }; - htsr = derive2 { name="htsr"; version="1.1.3"; sha256="01id95530g80hn4l94ngi7562iy52pc63s4i7a9glc4h6w3hwl15"; depends=[DBI directlabels dplyr editData ggplot2 lubridate openair purrr raster RColorBrewer readr readxl RODBC RSQLite shiny stringr tibble WriteXLS zoo]; }; + htsr = derive2 { name="htsr"; version="1.1.4"; sha256="1iz1zbcz6w06x83bj5dw4w6vlqx1gcpy0qhmdjbavn90a3rr2gq7"; depends=[DBI directlabels dplyr editData ggplot2 lubridate openair purrr raster RColorBrewer readr readxl RODBC RSQLite shiny stringr tibble WriteXLS zoo]; }; httk = derive2 { name="httk"; version="2.1.0"; sha256="0ygx5fvb4pcqmqw89sf0z6ag2k2nkci2glv46dbsyhn85xsxw8ia"; depends=[data_table deSolve magrittr msm mvtnorm purrr Rdpack survey truncnorm]; }; - httpRequest = derive2 { name="httpRequest"; version="0.0.10"; sha256="0f6mksy38p9nklsr44ki7a79df1f28jwn2jfyb6f9kbjzh98746j"; depends=[]; }; + httpRequest = derive2 { name="httpRequest"; version="0.0.11"; sha256="0qsi01fcrkps0h6r7l3l5ph3zlq9gscmq19b9ah2q2qlcv3hk4cf"; depends=[]; }; httpcache = derive2 { name="httpcache"; version="1.2.0"; sha256="026sl19301al3sid9hlwq8jz5b0zvh9a4n3cl4niqvc2b57h133r"; depends=[digest httr]; }; httpcode = derive2 { name="httpcode"; version="0.3.0"; sha256="0xig0rvc81hg7mw0iq9s0an1nw24fg0kfs2p2n6dzhwl9w506fjr"; depends=[]; }; httpgd = derive2 { name="httpgd"; version="1.3.0"; sha256="0pzkydsgfnszzcvc9qfaksw4rp97ir63kq9164l0k0ha2nncvmpk"; depends=[BH cpp11 later systemfonts]; }; @@ -10854,8 +10593,8 @@ in with self; { httptest = derive2 { name="httptest"; version="4.1.0"; sha256="1k5z55f5l7khi142787ignf57rfhxzf442rzbhpr04182g906xfx"; depends=[curl digest httr jsonlite testthat]; }; httptest2 = derive2 { name="httptest2"; version="0.1.0"; sha256="18i4lzqkmhd500rjfkh24drcqvw8ric3disddcl7bm3rddwn4bvh"; depends=[digest httr2 jsonlite rlang testthat]; }; httpuv = derive2 { name="httpuv"; version="1.6.5"; sha256="0mlilxh2mlrsbbrncla2rg02crr8nnajv649d8whx7ayr8lkdxpm"; depends=[later promises R6 Rcpp]; }; - httr = derive2 { name="httr"; version="1.4.2"; sha256="1y8y1g1dkgv9jafrk1kj6pzxpw95c0rr9lplblfq2byrs1pfsas6"; depends=[curl jsonlite mime openssl R6]; }; - httr2 = derive2 { name="httr2"; version="0.1.1"; sha256="1lkl73wignikdldxbmb8iic55x2l9h3jh2936db4g8jp8xkn3jhd"; depends=[cli curl glue magrittr openssl R6 rappdirs rlang withr]; }; + httr = derive2 { name="httr"; version="1.4.3"; sha256="0skwi501rzndywn81704d68n1l6lrvqilf91q08cjfhpjvx171ls"; depends=[curl jsonlite mime openssl R6]; }; + httr2 = derive2 { name="httr2"; version="0.2.1"; sha256="0ykr1dc4vk5w97amh4lrmljr1vk57vxa7ri50lsajklgpd8wkqp5"; depends=[cli curl glue magrittr openssl R6 rappdirs rlang withr]; }; hudr = derive2 { name="hudr"; version="1.0.0"; sha256="1ckqydfadldp5l685cfnjwfzyrh7ps6v59ra2q3i22jkvqnl06hb"; depends=[data_table httr janitor magrittr]; }; hues = derive2 { name="hues"; version="0.2.0"; sha256="062i7yc16nmnp15c1jh4xffw2lpklp36wkn1yvagh186ahnlgffx"; depends=[colorspace]; }; huge = derive2 { name="huge"; version="1.3.5"; sha256="1sl457a1lndrx98y2j9a2smanawx2iqlhl82iand0g3p5xp8ch4j"; depends=[igraph MASS Matrix Rcpp RcppEigen]; }; @@ -10868,18 +10607,18 @@ in with self; { hunspell = derive2 { name="hunspell"; version="3.0.1"; sha256="0ql6y05d4xxpm468rslb0wxdp1x9l3flxzmb5w6pjg617f8vpv8z"; depends=[digest Rcpp]; }; hurdlr = derive2 { name="hurdlr"; version="0.1"; sha256="1ryrqsxa07isxv2zx156bcn36d4yjvwpirb8jqcmqm97q7rmihmq"; depends=[]; }; hurricaneexposure = derive2 { name="hurricaneexposure"; version="0.1.1"; sha256="0a8xy71dkq2bzdnc90irxmbcxhi0anh87ic22x7b22c3m5605w6s"; depends=[data_table dplyr ggmap ggplot2 lazyeval lubridate mapproj maps purrr RColorBrewer rlang stringr tidyr]; }; - hutils = derive2 { name="hutils"; version="1.7.1"; sha256="118yf5p5j57i2chq6rzvipjryg1dslwp6ksn7rmhyqkmgald9hz9"; depends=[data_table fastmatch magrittr]; }; - hutilscpp = derive2 { name="hutilscpp"; version="0.8.1"; sha256="0pil26anvv2pv1s7kdbnzvr1r7fw65810nqwkknhhn6arm8fg0z4"; depends=[data_table glue hutils magrittr]; }; + hutils = derive2 { name="hutils"; version="1.8.1"; sha256="0pdya5gdyab5pwpgiw9yfa95m5ynqk154sydsfg56dxq1ihzfr74"; depends=[data_table fastmatch magrittr]; }; + hutilscpp = derive2 { name="hutilscpp"; version="0.9.1"; sha256="08kbs642416480awympdab66kdpax3vrv98dqsvlwnvm5ahmy4c6"; depends=[data_table hutils magrittr]; }; huxtable = derive2 { name="huxtable"; version="5.4.0"; sha256="1bhz3pz0bbnwdqy4jriz3m1wzyrlkqyhfv5h5l90cap3m0mlx6b6"; depends=[assertthat commonmark generics glue memoise R6 rlang stringi stringr tidyselect xml2]; }; hwde = derive2 { name="hwde"; version="0.67"; sha256="0wb2f9i5qi7w77ygh8bvydfpr7j5x8dyvnnhdkajaz0wdcpkyaqy"; depends=[]; }; - hwep = derive2 { name="hwep"; version="0.0.1"; sha256="0zfziixdhvj7rhg4wi83c56grsmpa448ljcjfhjclm0iimzc4050"; depends=[doFuture doRNG foreach future iterators pracma tensr]; }; + hwep = derive2 { name="hwep"; version="0.0.2"; sha256="1q188ifm4pnprspcaicpyg81qg146g4axa7fa70ljk7kaljg5vgd"; depends=[doFuture doRNG foreach future iterators pracma tensr]; }; hwig = derive2 { name="hwig"; version="0.0.2"; sha256="06a42a38qsjwijbbr2c8dsd7hjm751g1s4sgcmzvvfi6xy7svl3k"; depends=[asnipe data_table spatsoc]; }; hwordcloud = derive2 { name="hwordcloud"; version="0.1.0"; sha256="0civbwv276lcwvfs4qzz14r8rk14kg1ml4zzhi3msnkkh29v70y2"; depends=[colourpicker htmlwidgets shiny wordcloud2]; }; - hwriter = derive2 { name="hwriter"; version="1.3.2"; sha256="0arjsz854rfkfqhgvpqbm9lfni97dcjs66isdsfvwfd2wz932dbb"; depends=[]; }; + hwriter = derive2 { name="hwriter"; version="1.3.2.1"; sha256="1wxnv8h9cs65m3z01dpnnkgn2cpwfsck70g1jz9nbkr7mdaa4bzd"; depends=[]; }; hwsdr = derive2 { name="hwsdr"; version="1.0"; sha256="0r9chbjkdvr6614kpps5250pdg5w2gxyf2a0rvxf3hgs5krgcm32"; depends=[httr raster sf]; }; hwwntest = derive2 { name="hwwntest"; version="1.3.1"; sha256="1mz5svx5vbisdl5wxdnwip13pq4slyigc7j52l526rr9n0l0pr5v"; depends=[polynom wavethresh]; }; hySpc_testthat = derive2 { name="hySpc.testthat"; version="0.2.1"; sha256="12za828sw2al3aa236ksmnwxpy2sqw8gl8b3p3vvrjk1l31l1qcm"; depends=[testthat]; }; - hybridEnsemble = derive2 { name="hybridEnsemble"; version="1.0.0"; sha256="08y11cmlhnl456wxsvh3ll1f9ywkmgqjwlwr3v3qhm54nlanwvkr"; depends=[ada AUC e1071 FNN genalg GenSA glmnet kernelFactory NMOF nnet nnls pso quadprog randomForest reportr Rmalschains ROCR rotationForest rpart soma tabuSearch]; }; + hybridEnsemble = derive2 { name="hybridEnsemble"; version="1.7.8"; sha256="0n8w0g6d8hs3lay29ix9qfzkl6nzbwwnqxqd7kkzdkp8a0wq3qiv"; depends=[ada AUC doParallel e1071 FNN foreach genalg GenSA glmnet kernelFactory NMOF nnet nnls pso quadprog randomForest reportr Rmalschains ROCR rotationForest rpart soma tabuSearch]; }; hybridModels = derive2 { name="hybridModels"; version="0.3.7"; sha256="0fj3dvv7s1hlicvlb077pkhbj894brzgdxhp67jck9zpy2qymzxq"; depends=[doParallel doRNG foreach ggplot2 GillespieSSA reshape2 stringr]; }; hybridogram = derive2 { name="hybridogram"; version="0.3.2"; sha256="14p2gwmgcaf84aycdc2a51frw2pccrffsjk8n83gvj2ans8phrr9"; depends=[pheatmap]; }; hydra = derive2 { name="hydra"; version="0.1.0"; sha256="0r3r8cds4h15narawxhzkrvgnf00vlgrgqdgnmbzjyyb1dmry8wn"; depends=[]; }; @@ -10909,7 +10648,6 @@ in with self; { hypersampleplan = derive2 { name="hypersampleplan"; version="0.1.1"; sha256="1sk3s1jm46ac4i7p433s3kyngj86kq2821zzhp30a3y8vi1j2psq"; depends=[]; }; hypervolume = derive2 { name="hypervolume"; version="3.0.2"; sha256="03cmimncj3jj0q5f04mmy0a7xh4928278fvqy3lfg3snc3k7n7m7"; depends=[caret data_table doParallel dplyr e1071 fastcluster foreach geometry ggplot2 hitandrun ks maps MASS mvtnorm palmerpenguins pbapply pdist progress purrr raster Rcpp RcppArmadillo rgeos sp]; }; hypoRF = derive2 { name="hypoRF"; version="1.0.0"; sha256="1yyq1pjxm9p395wq4zfimvcagspl8vlk0kzpa92pr084q5f7jcyr"; depends=[ranger]; }; - hypothesestest = derive2 { name="hypothesestest"; version="1.0"; sha256="0g8sm386m1zm9i3900r62x83wb600cy8hqk7dlvbx6wcgrxg82sm"; depends=[]; }; hypothesisr = derive2 { name="hypothesisr"; version="0.1.1"; sha256="0z06risagphhvqiw4lrxy52q6q2yr10w2yxsm8iz1wh9ik097pcv"; depends=[dplyr httr jsonlite]; }; hypr = derive2 { name="hypr"; version="0.2.2"; sha256="1bmg8pz57qxyyicfsyv3s2mk9y914jsids4glsm640kvpy9a59q6"; depends=[cli magrittr MASS pracma]; }; hypsoLoop = derive2 { name="hypsoLoop"; version="0.2.0"; sha256="0kwxzw2r406li2pmby92a3jik4k3z1vdgs54m4q45a8r8vz3y1nn"; depends=[dplyr ggplot2 PolynomF sf sjPlot stars terra]; }; @@ -10919,14 +10657,13 @@ in with self; { i18n = derive2 { name="i18n"; version="0.1.0"; sha256="1cg7cdm3ja3rz4wrn46gvdifi1yx30lrc6j1c9r5iahmc78hlmgl"; depends=[magrittr]; }; i2dash = derive2 { name="i2dash"; version="0.2.3"; sha256="0pj4s47nbs67jnnk0dsna59lrn983zzkybbf6hf4s77sikshmwf0"; depends=[assertive_sets assertive_types flexdashboard glue htmltools knitr magrittr rmarkdown stringi stringr xfun ymlthis]; }; i2extras = derive2 { name="i2extras"; version="0.1.2"; sha256="0h9hy9qbw2lk0pxhrn2gygmcx731r38pj08iyfci5axp8fs0cizs"; depends=[data_table dplyr ellipsis ggplot2 incidence2 rlang tibble tidyr tidyselect trending vctrs]; }; - iAR = derive2 { name="iAR"; version="1.0"; sha256="1cxqrd2bywifq0k2837p7kn7s9grh6gk940ng0654fzqvy4r5nxs"; depends=[ggplot2 Rcpp RcppArmadillo Rdpack]; }; + iAR = derive2 { name="iAR"; version="1.0.1"; sha256="1q9jd0fk0xdm1ipdqnzrpr5knq7ng2a43y51zh7yrsadc7nrkrqj"; depends=[ggplot2 Rcpp RcppArmadillo Rdpack]; }; iAdapt = derive2 { name="iAdapt"; version="2.0.1"; sha256="050kzacvf19m8s89layqqf0l85db1k4cd3akb16jrv9wjfi9k61v"; depends=[Matrix shiny shinydashboard]; }; iBATCGH = derive2 { name="iBATCGH"; version="1.3.1"; sha256="0xq4q4kc2f0whrxz1vmi2gca9pxqix2qm4sfkwbch85if2k8l8fj"; depends=[msm Rcpp RcppArmadillo]; }; - iBST = derive2 { name="iBST"; version="1.0"; sha256="02p7lcr1wrf21v4568jc8hmjcijy3fnbv77s8nlhv2s4p0pgzh5x"; depends=[Rcpp rpart survival]; }; + iBST = derive2 { name="iBST"; version="1.1"; sha256="0nyyzhscysc7dail5mwnw5w044q88m8sk2lg4xdkw52pdkw1a9z0"; depends=[Rcpp rpart survival]; }; iBreakDown = derive2 { name="iBreakDown"; version="2.0.1"; sha256="00jzrndb3ahsv6ihp2pvs732n9cc944m83vdinrl9v1pxd82prkh"; depends=[ggplot2]; }; iC10 = derive2 { name="iC10"; version="1.5"; sha256="1xq6xv582wxdb0nc2nia3q38155gx8z26idiqyx7h1rjb20hhwdl"; depends=[iC10TrainingData impute pamr]; }; iC10TrainingData = derive2 { name="iC10TrainingData"; version="1.3.1"; sha256="175ymib3h359296hk36psryksisipx63ybvacz8hys21irzx58j1"; depends=[]; }; - iCAMP = derive2 { name="iCAMP"; version="1.3.4"; sha256="0hzl18irvndnka8vkza0f9sspfj4708dmzsdvbnv7mz4s41vqn11"; depends=[ape bigmemory Hmisc minpack_lm nortest permute vegan]; }; iCARH = derive2 { name="iCARH"; version="2.0.2.1"; sha256="1x703ydssmgb7j0hgqn3d5sh9457jgj7s2m8i12x2b9wvkh0fz8j"; depends=[abind ggplot2 glue igraph KEGGgraph MASS Matrix mc2d RCurl reshape2 rstan]; }; iCellR = derive2 { name="iCellR"; version="1.6.5"; sha256="0jdm61mbjl0m4d9p6yc4b1pvbdzlk5qgably1y5ck8r9sk426vdn"; depends=[ape data_table ggdendro ggplot2 ggpubr ggrepel gridExtra hdf5r Hmisc htmlwidgets igraph jsonlite knitr Matrix NbClust pheatmap plotly plyr png progress RANN RColorBrewer Rcpp reshape Rtsne scatterplot3d shiny uwot]; }; iCiteR = derive2 { name="iCiteR"; version="0.2.1"; sha256="0hbps2q5i7yj6zvqawlayhqqr5iv39yqc0xnk7fvra7rimzc1qid"; depends=[httr]; }; @@ -10937,7 +10674,7 @@ in with self; { iDOVE = derive2 { name="iDOVE"; version="1.3"; sha256="10xxg2mldbcjd6n1l2kblm7agw93ckx6waqwq9dm00l88kf06l3f"; depends=[knitr Rcpp RcppArmadillo]; }; iDynoR = derive2 { name="iDynoR"; version="1.0"; sha256="01702vl10191mbq2wby1m0y6h8i6y6ic4pa83d27cg3yccsrhziz"; depends=[vegan XML]; }; iFad = derive2 { name="iFad"; version="3.0"; sha256="0jrl9bayihp3wb4k5w9kc71qlsdxk7vl83ydfibx2bg79c4hf3cs"; depends=[coda MASS Rlab ROCR]; }; - iForecast = derive2 { name="iForecast"; version="1.0.4"; sha256="0yng5qrz1k4f1rn2wfhh8iik2zxzrzj8a0dka2gvlw2hwm2n4cgj"; depends=[caret magrittr zoo]; }; + iForecast = derive2 { name="iForecast"; version="1.0.5"; sha256="0yrw98cj93a8zzb70lhk143rvbw3rqw2v086jy6yhvm3i8q8571g"; depends=[caret magrittr zoo]; }; iGSEA = derive2 { name="iGSEA"; version="1.2"; sha256="1xlz8mbxqnrwyqj7jwma7vmvjlaccajbfxf3hi4wp5qs2pch8806"; depends=[]; }; iGasso = derive2 { name="iGasso"; version="1.4"; sha256="17xxqncl5xcphdqclghcazygcgibf8ijdf4kkl3ga11xf70sahj2"; depends=[CompQuadForm lattice]; }; iGraphMatch = derive2 { name="iGraphMatch"; version="2.0.0"; sha256="0xqf04wc5rm7x281pmnpz6a5ax26i9drgy90ixl4bchcx5ma0mr5"; depends=[clue igraph irlba Matrix Rcpp]; }; @@ -10967,7 +10704,7 @@ in with self; { ialiquor = derive2 { name="ialiquor"; version="0.1.0"; sha256="0nrp75lzb49lhkxspvaq6wx5c48ny6fq9m3r1bz0v5f2fd5ilrdx"; depends=[]; }; iarm = derive2 { name="iarm"; version="0.4.2"; sha256="0scf1ad87sn4s7ki6hpgk4isy1k3qkdvs18bkwdflsarcx437ms2"; depends=[eRm ggplot2 gridExtra Hmisc PP psychotools vcdExtra]; }; ib = derive2 { name="ib"; version="0.2.0"; sha256="10h3b9ncz59rp8j628axnrl7gksjiyg576672dhcyd3ygd4by7p5"; depends=[betareg Formula lme4 MASS Matrix Rdpack VGAM]; }; - ibawds = derive2 { name="ibawds"; version="0.3.2"; sha256="15ra53yswbc189sq5mkip5hcf4c3inzmsg2i7kz0wakvrhc56hd8"; depends=[dplyr dslabs Ecdat ggplot2 kableExtra magrittr rlang scales stringr]; }; + ibawds = derive2 { name="ibawds"; version="0.4.0"; sha256="1a42nx2s13a134f8hd0f88xxih5hqp1dg06i7n59lp7iq8i4m2gs"; depends=[dplyr dslabs ggplot2 magrittr remotes rlang scales stringr]; }; ibb = derive2 { name="ibb"; version="0.0.2"; sha256="11rfrf0ap97rsq0yy23sjahp1bin3j31zdd61p8b5mbp0s0k7ci4"; depends=[dplyr httr jsonlite magrittr rlang tibble tidyselect]; }; ibd = derive2 { name="ibd"; version="1.5"; sha256="0rxvy4hn4fpbv6y214ggkmgfvzwns5mkanp4h8201rjk3v84mk2r"; depends=[car emmeans lpSolve multcomp]; }; ibdreg = derive2 { name="ibdreg"; version="0.3.6"; sha256="1x8z0vr2cmdks12hxfm0wwxskb0cr669w5j5rpa2ln8q704yy41g"; depends=[]; }; @@ -10978,7 +10715,6 @@ in with self; { ibmAcousticR = derive2 { name="ibmAcousticR"; version="0.2.1"; sha256="1hrd2273n9fgi3hgjissjn4syw914mxm4wr98ij819yahsi9aj42"; depends=[httr jsonlite XML]; }; ibmcraftr = derive2 { name="ibmcraftr"; version="1.0.0"; sha256="0zm5j0a1wjj5agibp38h73qxpq0njvrhfq3077xhhfizcb3v24sb"; depends=[Rcpp]; }; ibmdbR = derive2 { name="ibmdbR"; version="1.50.0"; sha256="151gg05gcy5wpyvyflr4mc0jq1npxzq9pc4spjc81x2igd14c370"; depends=[arules ggplot2 MASS Matrix RODBC rpart rpart_plot]; }; - ibmsunburst = derive2 { name="ibmsunburst"; version="0.1.1"; sha256="0dxsdsimqgs7lbbfx7h8l2r6xpwgy2r7cf2y1v8hkgapf6n5kjnk"; depends=[htmlwidgets jsonlite]; }; ibr = derive2 { name="ibr"; version="2.0-3"; sha256="1plyz4sl0i8qhk9dh3h7zvh9h8wqr589jvasmvp7r3slp4ndhp1r"; depends=[mgcv]; }; ibs = derive2 { name="ibs"; version="1.4"; sha256="06zyg6c083437nhilqfhcf6yzlvazkpxhi3dh5d3dqv2zhxixlz4"; depends=[Rcpp]; }; ic_infer = derive2 { name="ic.infer"; version="1.1-6"; sha256="14vcwx5592br4zky9mq82akwk8pfiz7p1rx2jvyb48prrs2mm9gy"; depends=[boot kappalab mvtnorm quadprog]; }; @@ -10990,13 +10726,13 @@ in with self; { icarus = derive2 { name="icarus"; version="0.3.1"; sha256="0ipbhzvwdn1cnzgdw33cwv901768srxfi588bimjx2ssl80mqn3a"; depends=[]; }; iccCounts = derive2 { name="iccCounts"; version="1.0.3"; sha256="0wcfdizj4ng7qr3yrjs356qq7xxbiqsf4s6fq4h54bnyvlj611jz"; depends=[Deriv dplyr ggplot2 glmmTMB gridExtra VGAM]; }; iccbeta = derive2 { name="iccbeta"; version="1.2.0"; sha256="03ms1c8qpbgxabj3hh4n0gwcazw6cd0cvixck5rz8fkvj04xzjak"; depends=[lme4 Rcpp RcppArmadillo]; }; - iccde = derive2 { name="iccde"; version="0.3.2"; sha256="0r7g2ydj3yigm2n3qprj65ydrk0lacba7qnig6l6s14zi4bg9xna"; depends=[]; }; + iccde = derive2 { name="iccde"; version="0.3.3"; sha256="1ha4raj3w6rx2r7mifcjnqq4mf7fkkkyw150brpfcwlznwq4gcsf"; depends=[]; }; icd_data = derive2 { name="icd.data"; version="1.0"; sha256="0cynr9327wfg88661w4hali48mb6ghyvlqgybsa38k9bbf57v8aa"; depends=[]; }; icdGLM = derive2 { name="icdGLM"; version="1.0.0"; sha256="1mh9kwn21n19v4lrmj33ghpna7dl66fx19gi6lcjanmrpzrkwdnz"; depends=[Matrix]; }; icdpicr = derive2 { name="icdpicr"; version="1.0.1"; sha256="099ipcpz1cff7cr572lww34az4wwym8phpbk2ph0545k2fk0c56d"; depends=[stringr]; }; icecream = derive2 { name="icecream"; version="0.2.0"; sha256="0gqad5sf78ggvdjhiis6x0y69ksrk1wgs4b8nxq51xna5wy5yqgl"; depends=[cli glue pillar purrr rlang]; }; icenReg = derive2 { name="icenReg"; version="2.0.15"; sha256="1cjlvj4i5bir5769a22w8bb9477h04d8rpxk9ks72jp6zjjkq5qa"; depends=[coda foreach MLEcens Rcpp RcppEigen survival]; }; - icensBKL = derive2 { name="icensBKL"; version="1.2"; sha256="1zzv80jnn8ilnc1gv4nj24l2fl8805rjhqjgkb0xx4y9zhpg1jkp"; depends=[gtools Icens MASS mvtnorm smoothSurv survival TeachingDemos]; }; + icensBKL = derive2 { name="icensBKL"; version="1.3"; sha256="0cl89vqiaxsfrs11f181sqap202jriij1qc7wb1zhyc80pk0ss56"; depends=[gtools Icens MASS mvtnorm smoothSurv survival TeachingDemos]; }; icensmis = derive2 { name="icensmis"; version="1.5.0"; sha256="1afpn07a25j2jh89r78bvarg2kr0sk3ap8gdmvk75lc6g3dhvri9"; depends=[Rcpp]; }; icertool = derive2 { name="icertool"; version="0.0.3"; sha256="0wwkqcvjmv2z8a8j597c2fjjcka1jz932i94rmqxcy31brvbi2nl"; depends=[digest DT ggplot2 ggrepel purrr readxl shiny shinyhelper shinythemes tidyverse]; }; icesAdvice = derive2 { name="icesAdvice"; version="2.1.1"; sha256="1i47kz45m45nn23j0ydq8vahw97py2im80yxadlqbvldjcm98vdw"; depends=[]; }; @@ -11046,12 +10782,14 @@ in with self; { igcop = derive2 { name="igcop"; version="1.0.1"; sha256="0jl107mdwbldi319qflqjzy8vk02sr4nihky8jl5kcgr6x55qh6z"; depends=[Rcpp rlang vctrs]; }; iglu = derive2 { name="iglu"; version="3.3.0"; sha256="1p3mwc0ny6d0i09bacdy9xzpn6rj2idx444wypn3rz98nddr665c"; depends=[caTools dplyr ggplot2 ggpubr gridExtra gtable hms lubridate magrittr patchwork plotly scales shiny tibble tidyr zoo]; }; igoR = derive2 { name="igoR"; version="0.1.3"; sha256="0i1s53pyibxpqdv4269q9riqwr3yvy207hwljx2gbnaf4jqpf5hk"; depends=[]; }; - igraph = derive2 { name="igraph"; version="1.3.0"; sha256="09dzc8lslljvhj2q46075vxcmlgkvq2qs500zdqyy9g8scq6iqbi"; depends=[magrittr Matrix pkgconfig]; }; + igraph = derive2 { name="igraph"; version="1.3.1"; sha256="0khl87ncc9hkvx4f1kyzv7w7bg9zbyd1rk20ja3azkhpqjkjnnjh"; depends=[magrittr Matrix pkgconfig]; }; igraphdata = derive2 { name="igraphdata"; version="1.0.1"; sha256="19w5npa4b8c054v94xlr7nmhhg2fhq4m8jbds86skp8zvipl4rkl"; depends=[]; }; igraphinshiny = derive2 { name="igraphinshiny"; version="0.1"; sha256="1ww5s4jfihzcx4k35lbhzsf54z720xh7b2p5alzk843m6rx77986"; depends=[igraph shiny]; }; igraphtosonia = derive2 { name="igraphtosonia"; version="1.0"; sha256="0vy9jnpjp68l8s0hi1l57j9p41c543h3iqv16pwl550f38zqp8j6"; depends=[igraph]; }; igrf = derive2 { name="igrf"; version="1.0"; sha256="1287mx1fpbq9y8jbyb43hlignkqg313rn3kc52pm6b2n77ipkrc6"; depends=[]; }; + ihclust = derive2 { name="ihclust"; version="0.1.0"; sha256="049jlx8bspl1md06zyh3m7fr666cymmcwarsjrkr8pdd7vlg918j"; depends=[doParallel factoextra foreach ggplot2]; }; iheatmapr = derive2 { name="iheatmapr"; version="0.5.1"; sha256="1pwkwh7ljlpr6zyz6j8knpz3iw60xzkw8amc98x4pc2mw148jvzx"; depends=[fastcluster ggdendro htmlwidgets jsonlite knitr magrittr RColorBrewer scales]; }; + iheiddown = derive2 { name="iheiddown"; version="0.9.3"; sha256="0s6dy3kcy6z83ix54djc4czdcx0lc3bl4g89fxrb0razwbswny58"; depends=[bib2df bookdown crayon dplyr fs gender ggplot2 pagedown pdftools readr rlang rmarkdown rstudioapi servr stringr tibble tidytext usethis xaringan]; }; ihpdr = derive2 { name="ihpdr"; version="1.2.1"; sha256="1qa9ndb5aqbmlqbl0ivh10ddah2rbhsc6928dml20fjgz7lggdww"; depends=[curl dplyr httr lubridate magrittr purrr readxl rlang rvest tidyr xml2]; }; iilasso = derive2 { name="iilasso"; version="0.0.2"; sha256="043m1n5840459zsknkb54801apb0a2cqfprncmj2wp235rbqj832"; depends=[BH Matrix Rcpp]; }; ijtiff = derive2 { name="ijtiff"; version="2.2.7"; sha256="187ykflj7b51j2jziqb45bcv9319w67g179505m74kjka897rir4"; depends=[checkmate cli dplyr fs magrittr purrr readr rlang strex stringr withr zeallot]; }; @@ -11084,12 +10822,11 @@ in with self; { imgpalr = derive2 { name="imgpalr"; version="0.3.1"; sha256="0v9npy63mv9r9wnd8pcdw4rkr0bybhhmkj36sza7dah92i06il17"; depends=[downloader dplyr farver jpeg magrittr tibble]; }; imgrec = derive2 { name="imgrec"; version="0.1.3"; sha256="0va04b264v2ywvqdgmvigygsd5f6vdy5cj2ip2nsyi1fzh68hadx"; depends=[base64enc dplyr httr jsonlite knitr rlang]; }; imguR = derive2 { name="imguR"; version="1.0.3"; sha256="14f7ghgc8rbrpqb21rinfbrj1wh80i6ii0awwi814152v5qzj4b3"; depends=[httr jpeg png]; }; - iml = derive2 { name="iml"; version="0.10.1"; sha256="1wz6xqhvqkzj723nw7qrlwb1171wvvpxhv3pa8cq7vcbkiflq37r"; depends=[checkmate data_table Formula future future_apply ggplot2 keras Metrics prediction R6]; }; - immcp = derive2 { name="immcp"; version="0.9.2"; sha256="07q5dhz12pvy631jxans6q62kzqx9pil3ra72pgqlcxpndvv6f4w"; depends=[Boruta clusterProfiler corrr ggplot2 GSEABase GSVA igraph limma magrittr Matrix pbapply proxyC reshape2 RobustRankAggreg visNetwork]; }; - immer = derive2 { name="immer"; version="1.1-35"; sha256="1nmf9wxxyq3p8b5kikpsr8b0v4s84zjpahg1rxvcrhc8blg26hjq"; depends=[CDM coda MASS psychotools Rcpp RcppArmadillo sirt TAM]; }; - immunarch = derive2 { name="immunarch"; version="0.6.7"; sha256="1dv983cnjyzwsfn7p174ab6rffpd1h24zy5w78mqapkyr0m95d98"; depends=[airr circlize data_table dbplyr dplyr dtplyr factoextra fpc ggalluvial ggplot2 ggpubr ggrepel ggseqlogo jsonlite magrittr MASS patchwork pheatmap plyr purrr Rcpp readr readxl reshape2 rlang Rtsne scales shiny shinythemes stringr tibble tidyselect UpSetR]; }; + iml = derive2 { name="iml"; version="0.11.0"; sha256="1za7bjnp07i20vyb6vxz2ya5cr8g4p076w61n8m38wnz04lz5yz5"; depends=[checkmate data_table Formula future future_apply ggplot2 Metrics prediction R6]; }; + immcp = derive2 { name="immcp"; version="1.0.3"; sha256="0xjk0a1dr45rnf6fzir74805winn1wppci2wk7wr2pwpmba86vzq"; depends=[arules clusterProfiler DOSE dplyr factoextra ggheatmap ggplot2 igraph magrittr Matrix openxlsx org_Hs_eg_db pbapply proxyC purrr rlang visNetwork]; }; + immunarch = derive2 { name="immunarch"; version="0.6.8"; sha256="1ysbpyhkkab0c0d78fpg8gki6gl6kyvh86v13azr7gbqas5a708b"; depends=[airr ape circlize data_table doParallel dplyr dtplyr factoextra fpc ggalluvial ggplot2 ggpubr ggrepel ggseqlogo glue igraph jsonlite magrittr MASS patchwork phangorn pheatmap plyr purrr Rcpp readr readxl reshape2 rlang rlist Rtsne scales shiny shinythemes stringdist stringi stringr tibble tidyr tidyselect UpSetR uuid]; }; immuneSIM = derive2 { name="immuneSIM"; version="0.8.7"; sha256="0brj12xnkzmn3n91vb39fq3q68wmzmwx9l38dl38yypp0l8pknjl"; depends=[Biostrings data_table ggplot2 ggthemes igraph Metrics plyr poweRlaw RColorBrewer repmis reshape2 stringdist stringr]; }; - imola = derive2 { name="imola"; version="0.3.2"; sha256="0v41xprzqhhj0463g9176jc3zr7g6mjrcgs8vrcn3g5lmg6c9z7z"; depends=[glue htmltools magrittr shiny stringi yaml]; }; + imola = derive2 { name="imola"; version="0.5.0"; sha256="087zdzn1vkyvqrdlwnackr6jyacrhg69q4b77s8z477kplickw8x"; depends=[glue htmltools magrittr shiny stringi yaml]; }; imp4p = derive2 { name="imp4p"; version="1.2"; sha256="1ld8bjjrlij9m7xns7izibag9mndrfh21xgq1w7g3bh5ag9p9fs0"; depends=[Iso missForest missMDA norm Rcpp truncnorm]; }; impactflu = derive2 { name="impactflu"; version="0.1.0"; sha256="0wpaq2q61g6hl9fffs5cjbzdz1qc8dxsbknfs0iarwkn08460bn5"; depends=[dplyr glue lubridate magrittr Rcpp rlang tibble]; }; impactr = derive2 { name="impactr"; version="0.4.0"; sha256="0nywix00j2j4gql83w81c7kyhlvfzydvjgzd1495xsiyy0a8c4jn"; depends=[glue lubridate lvmisc pillar pracma purrr Rcpp rlang signal stringr tibble toOrdinal vroom]; }; @@ -11105,7 +10842,6 @@ in with self; { imputeFin = derive2 { name="imputeFin"; version="0.1.2"; sha256="11qd43zs8gd3fg3f47lrb6b4r0w7kxczain61bxc67ppzflrafmd"; depends=[magrittr MASS mvtnorm zoo]; }; imputeGeneric = derive2 { name="imputeGeneric"; version="0.1.0"; sha256="16680bkx1p5w0l5jh6g8f0qbcv0alw9xr2gkbhfs0rpbv5canl7f"; depends=[gower parsnip]; }; imputeLCMD = derive2 { name="imputeLCMD"; version="2.0"; sha256="10v3iv1iw6mnss6ry836crq9zdgid2y1h3pvigzjsrmnp5n89mfz"; depends=[impute norm pcaMethods tmvtnorm]; }; - imputeMDR = derive2 { name="imputeMDR"; version="1.1.2"; sha256="0ds5a4wav9vb9z5nji8hv5l76310rd970xf702fd0ckx1sh6rgd7"; depends=[]; }; imputeMissings = derive2 { name="imputeMissings"; version="0.0.3"; sha256="1dfhi235j1qz2mv89j92b903j5mdwlzisiyvvi9mmiacdj5ln89z"; depends=[randomForest]; }; imputeMulti = derive2 { name="imputeMulti"; version="0.8.3"; sha256="0vk5fz6cr14czr2ycvvc1xh2cdf0k7sw0jbbjaf7dp8i4hr1j1vn"; depends=[data_table gtools Rcpp]; }; imputeR = derive2 { name="imputeR"; version="2.2"; sha256="0jfyl6k285x4lc58q13fhi004l4yaqas0d4g08rx78ml7p6l1r48"; depends=[reshape2]; }; @@ -11124,9 +10860,12 @@ in with self; { incidence = derive2 { name="incidence"; version="1.7.3"; sha256="1wdxh2p7scm419fqki0i7vsz45rd7557h5n3zf9fshb8x1fdf2z7"; depends=[aweek ggplot2]; }; incidence2 = derive2 { name="incidence2"; version="1.2.3"; sha256="1cs4yh2jaf9d0pivz25v2bv2ci0ks4vw6x3r2zxrq4981hiqgzl1"; depends=[clock data_table dplyr ellipsis grates pillar rlang tibble tidyselect vctrs]; }; incidental = derive2 { name="incidental"; version="0.1"; sha256="012pdwrkzlbnrrkvy67l6nvs1lrjgrzhfh3v4rqzk2ypdvfm3wmx"; depends=[dlnm ggplot2 MASS matrixStats numDeriv]; }; + incidentally = derive2 { name="incidentally"; version="0.9.0"; sha256="1d0174y169ygsxsnnlyiylnrwa1xryq9fyvixlh87nf6wi4yf9kg"; depends=[igraph]; }; inctools = derive2 { name="inctools"; version="1.0.15"; sha256="0ikldiwgizs2p9vcalk5729dr6krysnyr4ni0ybg9gljw7iafdlf"; depends=[binom cubature doParallel dplyr foreach ggplot2 glm2 magrittr plyr pracma rlang tibble tmvtnorm]; }; + incubate = derive2 { name="incubate"; version="1.1.8"; sha256="07v1ipmqlhrwcnnriqfvflrgqz17rlwwy6fm4hm4i2wx51n7w5d2"; depends=[future future_apply ggplot2 glue MASS purrr rlang scales survival tibble]; }; indelmiss = derive2 { name="indelmiss"; version="1.0.9"; sha256="0i4qnvc0xb3ngnk8xdscmx7qnicfs7s6czawf6schb1nh2pjpzyq"; depends=[ape numDeriv phangorn Rcpp]; }; independence = derive2 { name="independence"; version="1.0.1"; sha256="0yln5wd8m5fgh4h7k80vq22byf06k4d6574zxyqcig63hls7v568"; depends=[Rcpp]; }; + independenceWeights = derive2 { name="independenceWeights"; version="0.0.1"; sha256="07650hc93dxfx0sl2mdjzg2r84117q7ylbb9yfm3lh7dlb014lxp"; depends=[locfit osqp]; }; index0 = derive2 { name="index0"; version="0.0.1"; sha256="1kdjc86312a9x800h0i7z0z7bwbxyrqds8wnrm15aljkvk83xwxl"; depends=[]; }; indicspecies = derive2 { name="indicspecies"; version="1.7.12"; sha256="0ihlbbqygjpp6ynpk047f6n041fghhcyy9xkkgvrciqqvnif17vq"; depends=[permute]; }; indiedown = derive2 { name="indiedown"; version="0.1.1"; sha256="0r46r6s0asd182gs5map4wilhfb7jhgrcinnl36ib3q1xxn06457"; depends=[cli fs gfonts rlang withr]; }; @@ -11144,19 +10883,17 @@ in with self; { infix = derive2 { name="infix"; version="0.1.0"; sha256="1zgy8f8b9pmpvpgqh3niczkr94xkc53xcjim73djmd10azw3kgrk"; depends=[magrittr]; }; inflection = derive2 { name="inflection"; version="1.3.5"; sha256="1xyx2jnvyjn7n1xsg3m2qpl03qrnmlp9b8fa2h77f922fwj1zxgv"; depends=[]; }; influence_ME = derive2 { name="influence.ME"; version="0.9-9"; sha256="0f6d2hvs9qllyfpsp2cgh7w8yjxafclbk47n8av7j9zpp7s5yg9v"; depends=[lattice lme4 Matrix]; }; - influence_SEM = derive2 { name="influence.SEM"; version="2.2"; sha256="1cabl6486mlrmk0418s18wii3n6nl1ckv6w9281wdk4fy27y9qk2"; depends=[lavaan]; }; + influence_SEM = derive2 { name="influence.SEM"; version="2.3"; sha256="0z83rvlri9g30291p0wv4s0jhiy6445lcrqrd4n1crach9672yzy"; depends=[lavaan]; }; influenceAUC = derive2 { name="influenceAUC"; version="0.1.2"; sha256="0pscwfxs2y780lzd5sxldnnkzzs2lsjdwz71z44kn7884wqmikpm"; depends=[dplyr geigen ggplot2 ggrepel ROCR]; }; influenceR = derive2 { name="influenceR"; version="0.1.0.1"; sha256="0rj7rm236vn3v8302nwl12s0kvpv6xpdbm3q3gxk7vgwfl8nzi33"; depends=[igraph Matrix]; }; - influential = derive2 { name="influential"; version="2.2.4"; sha256="0xvq661cs2wcwp42rwk8f1izwd7zfg6wjs8r88mdjksra7j0wkaf"; depends=[coop ggplot2 igraph janitor ranger]; }; + influential = derive2 { name="influential"; version="2.2.5"; sha256="04qbs7maazhp4msfr45q4rfvgcqxlijr2v0349ymzdfdwp34a3zn"; depends=[coop ggplot2 igraph janitor ranger]; }; influxdbclient = derive2 { name="influxdbclient"; version="0.1.0"; sha256="0fdh1c9hfzamflzq2bsrkadqlysa95bqzl2xm60kr0ka1iamn7cj"; depends=[bit64 httr jsonlite nanotime plyr R6]; }; influxdbr = derive2 { name="influxdbr"; version="0.14.2"; sha256="03dzw86mvbc8w38q9skjki1z17vc04k9q8dx7sd3xg6xbr10f9d9"; depends=[dplyr httr jsonlite magrittr purrr rlang tibble tidyr xts zoo]; }; infoDecompuTE = derive2 { name="infoDecompuTE"; version="0.6.2"; sha256="0r1capiv4zr31dsy0sqly9zb00i86zq2ihbgsmb5g4cy0f04xlqz"; depends=[MASS]; }; informR = derive2 { name="informR"; version="1.0-5"; sha256="16pz47wlr1gr8z5hdnrjpczm967khqiqgdfiw15a0bby6qdvni2y"; depends=[abind relevent]; }; informedSen = derive2 { name="informedSen"; version="1.0.7"; sha256="1zb93289jszyj57ji00r35hx8ralxw2n6i384h6myxddgl377qfv"; depends=[sensitivitymult]; }; - infotheo = derive2 { name="infotheo"; version="1.2.0"; sha256="18xacczfq3z3xpy434js4nf3l19lczngzd0lq26wh22pvg1yniwv"; depends=[]; }; - infra = derive2 { name="infra"; version="0.1.2"; sha256="0jycnnmrrjq37lv67xbvh6p63d6l4vbgf3i1z9y7r75d6asspzn1"; depends=[]; }; + infotheo = derive2 { name="infotheo"; version="1.2.0.1"; sha256="1m1979vf8rvq3534mp1hihfadikhxrg3p6ac3hirz96kgb4qxyy0"; depends=[]; }; infraFDTD_assist = derive2 { name="infraFDTD.assist"; version="0.6"; sha256="04j5nl5vxk79iciz6s9bpiyn319c2dbh7fdahgwira2r30w2fxv9"; depends=[fields]; }; - infutil = derive2 { name="infutil"; version="1.0"; sha256="02d0hfbkdqjj0lm1fzwwxy60831kbcjn2m4rfblpib0krkbpz72n"; depends=[ltm]; }; ingredients = derive2 { name="ingredients"; version="2.2.0"; sha256="11bv4l4fn9kr7y2nfzrwnaya8fi9w3nwcm9vzlqb7dva83rkqbsc"; depends=[ggplot2 gridExtra scales]; }; ini = derive2 { name="ini"; version="0.3.1"; sha256="04yqij344dwm0xqgara8xia42mlmij3i8711qbb5534w05a1l6bv"; depends=[]; }; injectoR = derive2 { name="injectoR"; version="0.2.4"; sha256="0sa32cspp6y3m04yfmd02kxx55mk7l9jxf4r9pk1a6k3sqnj6fl8"; depends=[]; }; @@ -11174,7 +10911,7 @@ in with self; { insect = derive2 { name="insect"; version="1.4.2"; sha256="0pbac9il1jrhii0hxvvqjc3phyr2iamxwzanxx5mrkyjh2wsl3jh"; depends=[ape aphid kmer openssl phylogram RANN seqinr xml2]; }; insee = derive2 { name="insee"; version="1.1.4"; sha256="0f0vchk6cwy8i1x921sb4nhzkwf81zgjiys041nhmrj3y4dxnxlz"; depends=[crayon dplyr httr openssl purrr rappdirs readsdmx rlang stringr tibble tidyselect xml2]; }; insiderTrades = derive2 { name="insiderTrades"; version="0.0.1"; sha256="1hz2jmghfihbn1dbrr38zlwa0s44gm84pjhhk0yfrnljg9mqf4qy"; depends=[magrittr RCurl stringr]; }; - insight = derive2 { name="insight"; version="0.17.0"; sha256="1rxcy8nyg3y50czm3y1x2pibivywcb1bjmvpyqlzg4yy2j84v69p"; depends=[]; }; + insight = derive2 { name="insight"; version="0.17.1"; sha256="0dffrsimgijdqsgvr9cad4g4w97d5ssjl3l0fm5ssly9l115ag35"; depends=[]; }; insol = derive2 { name="insol"; version="1.2.2"; sha256="166kgxgzbh55y2qqya6c2si22x0v7asi70im054g6xxwc5187kh3"; depends=[raster]; }; inspectdf = derive2 { name="inspectdf"; version="0.0.11"; sha256="19ainhxgda58cb70gwxki618wln1v1k4iwvnlvy6s7aldry4wgc4"; depends=[dplyr ggfittext ggplot2 magrittr progress Rcpp tibble tidyr]; }; inspector = derive2 { name="inspector"; version="1.0.3"; sha256="16gc98af6wmwf32fz8zml5v17g5lkiybzyzsqgphx0k19hrbc6kr"; depends=[Rdpack]; }; @@ -11185,13 +10922,12 @@ in with self; { insurancerating = derive2 { name="insurancerating"; version="0.6.9"; sha256="02nwc1429v8yvnpd5s7b9fywyzbccbqpfyq25pn5d166ly3vaqa5"; depends=[ciTools classInt colorspace data_table DHARMa dplyr evtree fitdistrplus ggplot2 insight lubridate magrittr mgcv patchwork scales stringr]; }; intRegGOF = derive2 { name="intRegGOF"; version="0.85-5"; sha256="0xjq8vdlgqlzrvp752gd4qfrpnpapx7k6xzfsvfril8ngvm9a162"; depends=[]; }; intRinsic = derive2 { name="intRinsic"; version="0.2.0"; sha256="01bgh88f94imqhx63miv0gyjw51sbqidp6p3g0f6p8rl95aqnq6h"; depends=[dplyr FNN ggplot2 knitr MCMCpack pheatmap Rcpp RcppArmadillo reshape2 rlang salso]; }; - intRvals = derive2 { name="intRvals"; version="1.0.0"; sha256="0391raj5wq6issvzqm8bfnv1ap2hh5nfsqi9r1x5ss37fvcq5fjm"; depends=[lme4 plyr]; }; + intRvals = derive2 { name="intRvals"; version="1.0.1"; sha256="013n0qp12dqnnk931rvs6lql2r13z5j4jf27s4aqfyd80mnl5w7k"; depends=[lme4 plyr]; }; intamap = derive2 { name="intamap"; version="1.4-16"; sha256="1spgxz3cvfcfk7n1agmns2q3bd9gl19q7szq8kzjp7zi9bzd6xb6"; depends=[automap doParallel evd foreach gstat MASS MBA mvtnorm rgdal sp]; }; - intccr = derive2 { name="intccr"; version="3.0.3"; sha256="1sg4pda60xx2zqhwckc0nq4b82xxw0jinaw13p671pw9gb4mz38g"; depends=[alabama doParallel foreach MASS]; }; + intccr = derive2 { name="intccr"; version="3.0.4"; sha256="1bpzsik6yypkxskp7ar8a1j0wmndsx41xn4kaffz0fni988l23hc"; depends=[alabama doParallel foreach MASS splines2]; }; intcensROC = derive2 { name="intcensROC"; version="0.1.3"; sha256="1raqjc3g9fgyd01iax7hrmkk3nzzfi34a1ywhjrkwv1n9gsc58ns"; depends=[pracma Rcpp RcppEigen]; }; - intdag = derive2 { name="intdag"; version="1.0.1"; sha256="0mb0a1ccc67clfa75b4hl901zdmx7fxw713c4ybx3i5wc2ldl8ph"; depends=[]; }; intePareto = derive2 { name="intePareto"; version="0.1.2"; sha256="0shq97r6x4j7p9vcf855jcvmfhghngbhk5dfqlqqhhcf8ibm2si5"; depends=[biomaRt DESeq2 GenomeInfoDb GenomicAlignments GenomicRanges IRanges rPref Rsamtools]; }; - integIRTy = derive2 { name="integIRTy"; version="1.0.6"; sha256="0nyp9nixwyz1n2nydkh64lmd5z4qjcabwa1pyzv69rgw5gx60020"; depends=[abind doParallel foreach ltm MASS mclust]; }; + integIRTy = derive2 { name="integIRTy"; version="1.0.7"; sha256="15f04p97fvqdq971adyafm3ljirfxz90lv096fdqn2vk0sq5dwyj"; depends=[abind doParallel foreach ltm MASS mclust]; }; integr = derive2 { name="integr"; version="1.0.0"; sha256="172vj29bdk42ibgwj7dl06wslpg2dccp1i8iscbz1yd0j5kw36sq"; depends=[DiagrammeR DiagrammeRsvg dplyr gtools rsvg]; }; intensegRid = derive2 { name="intensegRid"; version="0.1.1"; sha256="15vjf39fx6bkay15nbmqnv5vp8w6xy6fzf1lglqr6506pyaqh8w8"; depends=[dplyr httr jsonlite lubridate magrittr purrr rlang tibble tidyr]; }; intensity_analysis = derive2 { name="intensity.analysis"; version="0.1.6"; sha256="1ydmn7njqk6i2667zaha8mvfndss4im39czadg1f3z6sndp2lsji"; depends=[diffeR ggplot2 raster reshape2 rgdal]; }; @@ -11201,7 +10937,6 @@ in with self; { interactionTest = derive2 { name="interactionTest"; version="1.2"; sha256="0ycr839l07xahakr4r2jvlmd0fcxfm4qi3g8agnyh24c2kwl3ck2"; depends=[]; }; interactions = derive2 { name="interactions"; version="1.1.5"; sha256="16lrlj0rc9bkxgmackpvcx8wx9pbsnr55vak6zx022ss820h3ljj"; depends=[cli crayon generics ggplot2 jtools rlang tibble]; }; interep = derive2 { name="interep"; version="0.3.2"; sha256="1a4ws8wsrlkiq8dxrx85cq758dim3ym0sirag1k7hhv6pl825cxs"; depends=[MASS Rcpp RcppArmadillo]; }; - interferenceCI = derive2 { name="interferenceCI"; version="1.1"; sha256="19ky10nn6ygma6yy5h1krxx61aikh3yx5y39p68a944mz8f72vsn"; depends=[gtools]; }; interflex = derive2 { name="interflex"; version="1.2.6"; sha256="0crijwb076b3hprjnji52l8qnd5pp3w7pxy214sfqrg2g3y4gcfl"; depends=[AER doParallel foreach future ggplot2 ggplotify gridExtra gtable lfe Lmoments lmtest MASS mgcv ModelMetrics mvtnorm pcse pROC RColorBrewer Rcpp RcppArmadillo sandwich]; }; interfr = derive2 { name="interfr"; version="0.1.0"; sha256="1wn7i8dsll1qq3v39hgpbqnkjc8f4wlffy73453rw9lpq61y2fgj"; depends=[CircStats colorSpec plotrix]; }; intergraph = derive2 { name="intergraph"; version="2.0-2"; sha256="1ipxdrfxhcxhcbqvrzqh3impwk4xryqlqlgjl7f2mwrf365zs6ph"; depends=[igraph network]; }; @@ -11209,11 +10944,12 @@ in with self; { interimApp = derive2 { name="interimApp"; version="0.0.1"; sha256="1g2f1plsgzqf277jy2afhchjlcamr9znm02rj4rvky7nnp63gph0"; depends=[interim shiny shinyBS]; }; interleave = derive2 { name="interleave"; version="0.1.1"; sha256="0316nzcms9hawjvslvbkpb5rg3jbmzsy1dzvmy1hi80zlyrm891v"; depends=[geometries Rcpp]; }; interlineaR = derive2 { name="interlineaR"; version="1.0"; sha256="0y1ym6iwly8sv94pdzwv2qy1g7z4hpqlrbcrpb1ds5a62a6axqj5"; depends=[reshape2 xml2]; }; - interp = derive2 { name="interp"; version="1.0-33"; sha256="115yz7vvlga24m5dz3kirr2vzh59ki3gypvxwvaab8zy2mqr47v6"; depends=[deldir Rcpp RcppEigen]; }; + interp = derive2 { name="interp"; version="1.1-2"; sha256="1mxj7svkavx8wzysb4369z75g579sjjb433ssdy45bcp92wcy00r"; depends=[deldir Rcpp RcppEigen]; }; interplot = derive2 { name="interplot"; version="0.2.3"; sha256="1qs0ni16rbjilkahn15yn9sil3ba4n935bxpdbpwlsjina504jqj"; depends=[abind arm dplyr ggplot2 interactionTest purrr]; }; interpret = derive2 { name="interpret"; version="0.1.26"; sha256="0f7bhz5gj0f5dxjcc9xlrx4y474akn6q0d7z71yypyw6bawvqkbn"; depends=[]; }; interpretCI = derive2 { name="interpretCI"; version="0.1.1"; sha256="1jg2dpfrhb1kij2z0gq4sw1lrb4v2sky13dpfmdnaz2k5xqnih2s"; depends=[aplot dplyr english flextable ggbeeswarm ggplot2 moonBook officer patchwork purrr RColorBrewer rlang rmarkdown rstudioapi scales tidyr]; }; interpretR = derive2 { name="interpretR"; version="0.2.4"; sha256="0nfh3pyr7nn0r41xk0mfb4fs5rjkbh43lbw14x7pdmbgzpgsc22c"; depends=[AUC randomForest]; }; + inters = derive2 { name="inters"; version="0.1"; sha256="0z0sx02ami2mk5ppdawy9j9lb7nmn25b9g6lanchqhxmiffzg3r1"; depends=[fixest glmnet]; }; interval = derive2 { name="interval"; version="1.1-0.8"; sha256="0g0k9nri19p3y3s70ic1w3i3sxq8fbsxaikd7c4d6afqzr8hk2nl"; depends=[Icens MLEcens perm survival]; }; intervalaverage = derive2 { name="intervalaverage"; version="0.8.0"; sha256="07p9r358q3jxm8n7nypxmvpfnh61njivcwaplgzzxrlcbway6fq9"; depends=[data_table Rcpp]; }; intervals = derive2 { name="intervals"; version="0.15.2"; sha256="0mvwfwc03ifb30a3dzbmkv9adwqb8ajxhcw24d8xip8px063plhb"; depends=[]; }; @@ -11226,9 +10962,7 @@ in with self; { introgress = derive2 { name="introgress"; version="1.2.3"; sha256="1j527gf7pmfy5365p2j2jbxq0fb0xh2992hj4d7dxapn4psgmvsk"; depends=[genetics nnet RColorBrewer]; }; intrval = derive2 { name="intrval"; version="0.1-2"; sha256="1fbgl2r359aml6cfz8x7h0381kxfx1dy0hr0c7012vr66f6c2lhi"; depends=[]; }; intsurv = derive2 { name="intsurv"; version="0.2.2"; sha256="02ds4gikrgg19knylg68ziani702dyhqc37fhf9j7awa1qxy2r9l"; depends=[Rcpp RcppArmadillo]; }; - intsurvbin = derive2 { name="intsurvbin"; version="0.0.4"; sha256="119zjn1agl2j4fj4yg1pq1sqskzw93xfzppmc5n1x8llmfbxkqsj"; depends=[mgcv MHadaptive msm mvtnorm tmvtnorm]; }; intsvy = derive2 { name="intsvy"; version="2.5"; sha256="0m95srw9r80rz182iw28xc1qarv0dvijbjiq89bg7n55apwhh5wy"; depends=[dplyr foreign ggplot2 Hmisc memisc plyr reshape]; }; - intubate = derive2 { name="intubate"; version="1.0.0"; sha256="03ikqwai7wdahdfyzdy42xs8qpdhl9gmbak2qd82yxjl62956i8c"; depends=[]; }; inum = derive2 { name="inum"; version="1.0-4"; sha256="1khkzja8lwn9075864vbyajqina9m588ahf1fsrrajrsqilyzssz"; depends=[libcoin]; }; invGauss = derive2 { name="invGauss"; version="1.1"; sha256="0l93pk2sh74dd6a6f3970nval5p29sz47ynzqnphx0wl3yfmmg9c"; depends=[optimx survival]; }; invLT = derive2 { name="invLT"; version="0.2.1"; sha256="0dcr2cclgzkvsw1lysmjrkwgahas96rjc328yc7a1a56pf62kw2v"; depends=[]; }; @@ -11258,12 +10992,12 @@ in with self; { ipdw = derive2 { name="ipdw"; version="0.2-9"; sha256="1vjq5wxfmx1vfclrj68mf3w0lmsxrppin1kph38s2qzcg0y74ghg"; depends=[gdistance raster rgeos sp]; }; ipeadatar = derive2 { name="ipeadatar"; version="0.1.6"; sha256="1j600mhvy023ry9hx8ib6wqdv4mip1cjbwzs9190v8qpc9r2a460"; depends=[curl dplyr jsonlite lubridate magrittr purrr rlang sjlabelled stringr]; }; ipflasso = derive2 { name="ipflasso"; version="1.1"; sha256="0gf1yj35vr92qi59hffcf4hzrh2b439kfd6m745wgpxq6wic1hs3"; depends=[glmnet survival]; }; - ipfp = derive2 { name="ipfp"; version="1.0.1"; sha256="12aklhf9p70r9b2wi0qgbl835b4lil805c31n1ka4kdix4b4cpr4"; depends=[]; }; + ipfp = derive2 { name="ipfp"; version="1.0.2"; sha256="00588swwr7gz7gjx0clz55fgi4rm2h715fdmhsgm171bdmakh20r"; depends=[]; }; ipfr = derive2 { name="ipfr"; version="1.0.2"; sha256="0q44zw5g76qfqrqv6w2a8p905n4ljxab9jmyqk6fv9vs8j2kyivg"; depends=[dplyr ggplot2 magrittr mlr tidyr]; }; ipft = derive2 { name="ipft"; version="0.7.2"; sha256="0jifmkwac5yfl110200ljm3pas3321j068af9xqzqs0av20m8hps"; depends=[apcluster cluster dplyr ggplot2 Rcpp]; }; ipkg = derive2 { name="ipkg"; version="1.0.4"; sha256="12ddzqfdvz98568kwzrhlxv5j51g2qmxi2jyyvfm39rxncvsgrx1"; depends=[remotes]; }; - iplots = derive2 { name="iplots"; version="1.1-7.1"; sha256="1bz8n9cnx6zy3wsr49h55r0l5ikfl0xjg4r76fi4giid2a3ba4lf"; depends=[png rJava]; }; - ipmr = derive2 { name="ipmr"; version="0.0.4"; sha256="1j1dkfgglsx80872ck2hfd2bl4f2hzhfmlnlvyw6vdj2cnh728jv"; depends=[magrittr purrr Rcpp rlang]; }; + iplots = derive2 { name="iplots"; version="1.1-8"; sha256="01s8a43s2spxgmp6px5dpd96p8f4sfp98nxmxk763hg2868rksx3"; depends=[png rJava]; }; + ipmr = derive2 { name="ipmr"; version="0.0.5"; sha256="14hls6cvdfgkc253514vjrfw049ms846llv4677zsi0nqjzgbqkz"; depends=[magrittr purrr Rcpp rlang]; }; ipr = derive2 { name="ipr"; version="0.1.0"; sha256="1db06r784c6jga0anp6p5b3k47yfhr84nzxyjn52pc9zkg3yifjm"; depends=[]; }; ipred = derive2 { name="ipred"; version="0.9-12"; sha256="0hsq00382pfd9hzpcgphjxazbxm4zx0k2r6pk6kib56k0ibm7qfn"; depends=[class MASS nnet prodlim rpart survival]; }; iprior = derive2 { name="iprior"; version="0.7.3"; sha256="15qzqwikxy85fcd7psz363b5wb0kpi85icfyb47hbgdhln8fi2qb"; depends=[doSNOW foreach ggplot2 mvtnorm Rcpp RcppEigen reshape2 scales]; }; @@ -11273,8 +11007,9 @@ in with self; { ipw = derive2 { name="ipw"; version="1.0-11"; sha256="11a34j6lp329ran2r9kxn8184kfmibkdig74lsy6lj4w4w0d71cm"; depends=[geepack MASS nnet survival]; }; ipwCoxCSV = derive2 { name="ipwCoxCSV"; version="1.0"; sha256="0avnvf4pnpxnik3iwwglpwkc8h0vsx9v6fxldkbvq7l9bphdbba1"; depends=[survival]; }; ipwErrorY = derive2 { name="ipwErrorY"; version="2.1"; sha256="14p22mwc120kdlf6r1hfx4kp7nqrz2nl2vpvy45j8rbrc571b6ka"; depends=[nleqslv]; }; - iq = derive2 { name="iq"; version="1.9.3"; sha256="00pcvrz0wsdc98xh2lb94md76r0x0w4lzf157wncxjba38cz9kg8"; depends=[Rcpp RcppEigen]; }; + iq = derive2 { name="iq"; version="1.9.6"; sha256="18myhc0ilh2ngj67xq0inx88dzmn6c2q10qyzfpxy3al4zzg98fz"; depends=[Rcpp RcppEigen]; }; iqLearn = derive2 { name="iqLearn"; version="1.5"; sha256="1zn43zvx0mjzh96bm73scacmladamy8jmhxim7hcfq39cfhiw3c8"; depends=[]; }; + ir = derive2 { name="ir"; version="0.2.1"; sha256="1ck5247w5lxffd2x3jrslfx13jigik48xmcnkr7my2kzjmnqiyr1"; depends=[baseline ChemoSpec dplyr ggplot2 hyperSpec lifecycle magrittr purrr Rdpack rlang signal stringr tibble tidyr units]; }; irace = derive2 { name="irace"; version="3.4.1"; sha256="1dhlspv1gqg7cm7j95zhl0k2zr0s159krjmxm07k5fp68ax95sky"; depends=[R6]; }; irboost = derive2 { name="irboost"; version="0.1-1.1"; sha256="03rgcmaahq1mhv15lid41n39wiqn4lrnc4q0rq25q7xg328vc9d5"; depends=[mpath xgboost]; }; ircor = derive2 { name="ircor"; version="1.0"; sha256="07apa4l4ib11xw25d44b403s3la29sqlid13q41hjrlfxafm91ld"; depends=[]; }; @@ -11288,15 +11023,14 @@ in with self; { irt = derive2 { name="irt"; version="0.2.5"; sha256="13cfmzr7bw5jbcwykvjli5lsnbcr7n8w6nljwsmnsa42fa7f2159"; depends=[Rcpp]; }; irtDemo = derive2 { name="irtDemo"; version="0.1.4"; sha256="0rpwryybnj7b4bxn0mn1m496y85s2fpqdd78lmdl6jg1ck4j4pb3"; depends=[fGarch shiny]; }; irtGUI = derive2 { name="irtGUI"; version="0.2"; sha256="1hyabm9wvld1b1gvcn02yyd8j1wrpfmpxkcj505az64lqj4p7yj0"; depends=[irtoys magrittr mirt psych readxl shiny shinycssloaders shinydashboard WrightMap writexl]; }; - irtProb = derive2 { name="irtProb"; version="1.2"; sha256="12wnvbzkh0mx9i3iyh1v2n2f2wjsjj7ad3dgv9xj949x4nbz16j0"; depends=[lattice moments]; }; - irtoys = derive2 { name="irtoys"; version="0.2.1"; sha256="0h6iiaxikhbxhbyksbjnb09qdxinlkwr2v9yzs5wslbni14paq5q"; depends=[ltm sm]; }; + irtoys = derive2 { name="irtoys"; version="0.2.2"; sha256="1qshz6czykgf53mq6xiswzv5xsjwrkrinpfkf1yavql4v08hs82b"; depends=[ltm sm]; }; irtplay = derive2 { name="irtplay"; version="1.6.4"; sha256="128xw3ylcirfls4fif8ilnphfhpz9pn7pmg4sl1qrwqdh0xksgk2"; depends=[dplyr ggplot2 gridExtra janitor Matrix purrr reshape2 rlang statmod tidyr]; }; irtrees = derive2 { name="irtrees"; version="1.0.0"; sha256="003gmnv2d0xsqd54chadkbd8c8kf8fwr4lza86k6qkfs7d3ifkjm"; depends=[DiagrammeR tidyr]; }; irtreliability = derive2 { name="irtreliability"; version="0.1-1"; sha256="15qs8bvgrwajj5kfd57rd34l1p2805ilyd7w60ngrqc14d6az9d2"; depends=[fastGHQuad ltm mirt]; }; isa2 = derive2 { name="isa2"; version="0.3.5"; sha256="17vm0906szhrh2k5x694vwcfijbzmd1v3axpszfybc0lgds437cv"; depends=[lattice]; }; isaeditor = derive2 { name="isaeditor"; version="0.1.1"; sha256="10gm3mrpi52sj5mkmdgggx8a5yh6a506hawg7yg2518ym8552hsp"; depends=[colorDF crayon dplyr glue magrittr readr rlang tibble tidyr]; }; isatabr = derive2 { name="isatabr"; version="1.0.0"; sha256="1n6ar4fd81mwq72ddyxrky99xn796ddydpb20g5kj6r3df7i3wgk"; depends=[]; }; - isdals = derive2 { name="isdals"; version="2.0-4"; sha256="15p432fskdz2r8523cw122mfhvrq8vdsdsrd0kz9yfin4b5z3zfh"; depends=[]; }; + isdals = derive2 { name="isdals"; version="3.0.0"; sha256="04s2w482qpz3ww7hws4plhz9h60py75asm1f40bpqmbffwka57ms"; depends=[]; }; isdparser = derive2 { name="isdparser"; version="0.4.0"; sha256="05xkffmiiyhas5hzdjdylbrvh6fjc2fjh7s00iwjxkp4ba7rwq3g"; depends=[data_table lubridate tibble]; }; isingLenzMC = derive2 { name="isingLenzMC"; version="0.2.5"; sha256="1pd1s3a1rv7vlxd5db1pgwdjps8w5im4zz2h3qzal9cwbis0hb51"; depends=[]; }; islasso = derive2 { name="islasso"; version="1.4.3"; sha256="0ym8yxpqhs8msi5svqa3mzp3x4jd7j4d8aampwchpkzyp2306rmv"; depends=[glmnet Matrix]; }; @@ -11304,7 +11038,7 @@ in with self; { isni = derive2 { name="isni"; version="1.3"; sha256="02a4vbhk26w796kxsyzqfp3bqxn64byfd5x5qma09lmdaxzmm71m"; depends=[Formula lme4 matrixcalc mvtnorm nlme nnet]; }; isnullptr = derive2 { name="isnullptr"; version="1.0.1"; sha256="0kwjxq59n3qncdw63vsdvz7v5mzbl5lmckdfgiiw35pzmahnxzh9"; depends=[]; }; isoSurv = derive2 { name="isoSurv"; version="0.2.0"; sha256="1y6wdmxzzdl1dkvab72s2smm3brqfl0y3b9al8fnj3h2b8lw502j"; depends=[Iso survival]; }; - isoWater = derive2 { name="isoWater"; version="1.0.1"; sha256="1p7ymx01nlhi6488wfvw031cb8mw5483g9s4s70r5sxdmc8k9ybr"; depends=[abind doParallel foreach httr jsonlite R2jags R2WinBUGS]; }; + isoWater = derive2 { name="isoWater"; version="1.1.0"; sha256="0nl1n3q8yrpzmxwdv6s8pgal28dvlgmzr9ffg2bndsanvh28fsk9"; depends=[abind doParallel foreach httr jsonlite R2jags R2WinBUGS]; }; isoband = derive2 { name="isoband"; version="0.2.5"; sha256="19bbi0n0kz33xdgmdprcmc6raphd1hcm1w1brc16z5phcsh3zxa6"; depends=[]; }; isoboost = derive2 { name="isoboost"; version="1.0.1"; sha256="1c239l9rfjr8scpfq5c9rl55jabk64jchcdndjsb9s5qyx2x0qdr"; depends=[Iso isotone rpart]; }; isobxr = derive2 { name="isobxr"; version="1.0.1"; sha256="18kjymp7lkdnmzsl9cdgqk6x1njqwgp9rsf7z3gi683yfjli7p3g"; depends=[data_table deSolve dplyr DT fs ggplot2 ggrepel metR qgraph R_utils readxl rlang shiny shinyFiles shinyjs shinythemes stringr writexl]; }; @@ -11327,7 +11061,7 @@ in with self; { italy = derive2 { name="italy"; version="0.1.0"; sha256="0is90xp6980ja12jzi3816jq1y90ifcw6cvfmybb7invj6rr1cks"; depends=[]; }; itan = derive2 { name="itan"; version="3.1.1"; sha256="14aabrwvmqiyn8mypiaz80m24a0bczz2fl00f4dk9ham6hww4v1q"; depends=[ggplot2 reshape]; }; itcSegment = derive2 { name="itcSegment"; version="0.8"; sha256="032wj34313m3wigdfalq356srdzg0cvnvxnaxwxws6bc44r78izf"; depends=[maptools raster rgeos sp]; }; - itdr = derive2 { name="itdr"; version="1.0"; sha256="1113lr17m370ipg3sxghqvk4fj36bgqs5bfvnli8rss2ffyzfin0"; depends=[MASS]; }; + itdr = derive2 { name="itdr"; version="1.2.0"; sha256="1yq9ij608319h4r3y29y7vym055w5v7iyh9i1amrppba581z81di"; depends=[MASS]; }; iteRates = derive2 { name="iteRates"; version="3.1"; sha256="1dycmlm3vldc60wz2jjdfbla14383911zfahgal5mx8whxwq95c5"; depends=[ape apTreeshape geiger gtools MASS partitions VGAM]; }; iterLap = derive2 { name="iterLap"; version="1.1-3"; sha256="079d4hxf1ha8pgibzb4r1yk7xqpzndd7hjbp8294qb26jvvcnd8q"; depends=[quadprog randtoolbox]; }; iterators = derive2 { name="iterators"; version="1.0.14"; sha256="0yv7rh6ghlfx727xy2aq64a7skyxp9msakaffs641q9h15d0gwyf"; depends=[]; }; @@ -11337,7 +11071,7 @@ in with self; { itraxR = derive2 { name="itraxR"; version="1.4"; sha256="0gybgzc37q1i2zdik1xjn1l6p98jx8r8k722fsgfb17pxj4l4bkf"; depends=[broom compositions dplyr ggcorrplot ggfortify ggplot2 janitor readr rlang stringr tibble tidyr tiff]; }; its_analysis = derive2 { name="its.analysis"; version="1.6.0"; sha256="1ig7yq59y5xl1z182bbvgx8vsqs9sb1xscf6zxqn1qmy9f0ggf7v"; depends=[boot car forecast ggplot2 plyr]; }; itsadug = derive2 { name="itsadug"; version="2.4"; sha256="0759l7hhvj05dp92pz59xwrxjm9s1iwkwrdhs68l0fq57550j70l"; depends=[mgcv plotfunctions]; }; - itscalledsoccer = derive2 { name="itscalledsoccer"; version="0.1.0"; sha256="03ssjjzwjizmydy8534y27n020y2mvzdwinjckj96cfgrdw1px7m"; depends=[clisymbols crayon data_table dplyr glue httpcache httr jsonlite magrittr R6 rlang stringi tidyr]; }; + itscalledsoccer = derive2 { name="itscalledsoccer"; version="0.2.0"; sha256="1ckb7qwy90pr676imr25j89cfy9mvgdy8c7xhrznkvyp154y7wdi"; depends=[clisymbols crayon data_table dplyr glue httpcache httr jsonlite magrittr R6 rlang stringi tidyr]; }; itsdm = derive2 { name="itsdm"; version="0.1.1"; sha256="17r9m726grqwfjyy6gmnagc0yav358sxgcglyyww7k39cbhmyk57"; depends=[checkmate dplyr ecospat fastshap ggplot2 isotree ncdf4 outliertree patchwork raster rlang ROCit sf stars stringr tidyselect]; }; itsmr = derive2 { name="itsmr"; version="1.9"; sha256="0dmijaq6q31irwrjqv5gq1yfbgggwb3m6rwbg4lx1r9l3cqays7i"; depends=[]; }; iva = derive2 { name="iva"; version="0.1.0"; sha256="0dchb263ygilxapwsw2gpl18z12wcjsz8zz5fg7h068hmcysa88g"; depends=[Formula ucminf]; }; @@ -11359,7 +11093,6 @@ in with self; { ivx = derive2 { name="ivx"; version="1.1.0"; sha256="1dg09aajk9rqmrlwq4xw7qd5ra1z8wjxipy5l85sl1nzii250drq"; depends=[Rcpp RcppArmadillo]; }; jSDM = derive2 { name="jSDM"; version="0.2.1"; sha256="0i54gsvs63705cmn7bzna1f5nrnyr40ffbkjk202dl689lp05fb3"; depends=[coda corrplot doParallel foreach MASS Rcpp RcppArmadillo RcppGSL stringi]; }; jScore = derive2 { name="jScore"; version="0.1.0"; sha256="0hb63l10cwvpvix155d16v35lp1v88lp69f6q1s09njc6qdsg212"; depends=[]; }; - jSonarR = derive2 { name="jSonarR"; version="1.1.1"; sha256="054q3ly471xa64yyz2as6vkr440ip1y8n5wl6s3zbhqy3bqkdqif"; depends=[jsonlite RCurl]; }; jaatha = derive2 { name="jaatha"; version="3.2.2"; sha256="1if21hlbf0gz6p6f9h21cxdxcqxv3b54wx5zl4hmiaq9i6zrf8rr"; depends=[assertthat R6]; }; jab_adverse_reactions = derive2 { name="jab.adverse.reactions"; version="1.0.1"; sha256="0z7i6ni1bhih5yxwng1xxf8cgg3bb1il3p32rp5vfz2hfdm68vag"; depends=[]; }; jaccard = derive2 { name="jaccard"; version="0.1.0"; sha256="1dmla6qc1k8iw2d7zfjqhf13gqd2lpsrj09yh47ljf994fpab936"; depends=[dplyr magrittr qvalue Rcpp]; }; @@ -11371,7 +11104,7 @@ in with self; { jacpop = derive2 { name="jacpop"; version="0.6"; sha256="0kq6rn33civ2g6i5nwfqvcgmnn5k2dwmw60lkmz4ywm0y4xxlkai"; depends=[]; }; jaggR = derive2 { name="jaggR"; version="0.1.1"; sha256="0qd4kwcc8zcvg2p1njcv7z4y5ssg77zsylph5bcaqdjxq996q7rv"; depends=[formatR glue]; }; jagsUI = derive2 { name="jagsUI"; version="1.5.2"; sha256="1ig2v5k1xjggh694azr96cv80qapq8al7dhsjhvkx0dihp8kgad2"; depends=[coda rjags]; }; - jagstargets = derive2 { name="jagstargets"; version="1.0.1"; sha256="1ps0gmfgsgig793hfbwpwcnfjl8jni87nmx6i3az5k9y08p1i8ra"; depends=[coda digest fst posterior purrr qs R2jags rjags rlang tarchetypes targets tibble withr]; }; + jagstargets = derive2 { name="jagstargets"; version="1.0.2"; sha256="0w023mygc3hz76hqyggn8g8xvhjw2mabvxh99gayhf93vpaqpsjn"; depends=[coda digest fst posterior purrr qs R2jags rjags rlang tarchetypes targets tibble withr]; }; jalcal = derive2 { name="jalcal"; version="0.1.0"; sha256="19smqrhvab8f2xb8pa8x6gmvr0r2lwvqisfahixs7aa8lxi708jw"; depends=[]; }; janeaustenr = derive2 { name="janeaustenr"; version="0.1.5"; sha256="1wyn4qc28a3sval8shmyi2d7s4nl3jh96s8pzq871brxcmrncbwr"; depends=[]; }; janitor = derive2 { name="janitor"; version="2.1.0"; sha256="09nqm957m2f54y2l30619b58x4i7gxwvr2lwg5kly5xy1ya1a1nn"; depends=[dplyr lifecycle lubridate magrittr purrr rlang snakecase stringi stringr tidyr tidyselect]; }; @@ -11384,14 +11117,15 @@ in with self; { jcp = derive2 { name="jcp"; version="1.2"; sha256="120hhysgnb5992ss2ays7ksyy0xb251lsxgnxihc11h2rqg6wqv8"; depends=[]; }; jds_rmd = derive2 { name="jds.rmd"; version="0.3.0"; sha256="0xrs0xabh0m9ax9praiwj1l7z6mb53q53pqvcgwqw7xld6kkgzh7"; depends=[bookdown rmarkdown]; }; jeek = derive2 { name="jeek"; version="1.1.1"; sha256="15n0k0i1wwp72g8zqrjmglnckab3p65q3rnpg6d6h8hjcpv82i7g"; depends=[igraph lpSolve pcaPP]; }; - jenga = derive2 { name="jenga"; version="1.0.0"; sha256="1lnqvq979yw3im2cll2bynqafgcs81ndqkzi37smys4fnlb7kyi6"; depends=[abind ggplot2 imputeTS lubridate modeest moments narray philentropy purrr readr scales stringr tictoc]; }; + jenga = derive2 { name="jenga"; version="1.1.0"; sha256="04mp6zy6nf1a10sw8zbr3v813l70h5dj496dfbx7136wbp37al89"; depends=[abind entropy ggplot2 greybox imputeTS lubridate modeest moments narray philentropy purrr readr scales stringr tictoc]; }; jetpack = derive2 { name="jetpack"; version="0.5.2"; sha256="15hmkppq775crmwichg0fsg3ki7xqfavm9bz4li79armyiry44w2"; depends=[desc docopt remotes renv]; }; jetset = derive2 { name="jetset"; version="3.4.0"; sha256="0c99h5npsv2gf5d59s4qhkaqmjhbwa3prcykk24wzhnpfq6y6xhp"; depends=[AnnotationDbi org_Hs_eg_db]; }; jfa = derive2 { name="jfa"; version="0.6.3"; sha256="1p4lw8yfkrw7187q4pcjai3ly5xlxvivwghi61jh89zrq8n54vbb"; depends=[extraDistr]; }; jgcricolors = derive2 { name="jgcricolors"; version="1.0.0"; sha256="1lg6yzqly5y2cf396b6rvfqplnfyz9v9ay2g4q9m110mng5ln96l"; depends=[ggplot2 knitr markdown RColorBrewer stringr]; }; + jgsbook = derive2 { name="jgsbook"; version="1.0"; sha256="0n03qfi101ln5bp1fzck2dik5zwscl7lq4yxngqnx6rwpfyx8mlk"; depends=[statip]; }; jiebaR = derive2 { name="jiebaR"; version="0.11"; sha256="08v64xwr9jp4vh88x7y935khh4cmj8rwsjaxfd2c67n0445qppmd"; depends=[jiebaRD Rcpp]; }; jiebaRD = derive2 { name="jiebaRD"; version="0.1"; sha256="1wadpcdca4pm56r8q22y4axmqdbb2dazsh2vlhjy73rpymqfcph4"; depends=[]; }; - jinjar = derive2 { name="jinjar"; version="0.1.0"; sha256="1far987dcwm0akj61lww1n2p72v5n3gm9qmxgcd1n760rcziq35g"; depends=[checkmate cpp11 fs jsonlite rlang]; }; + jinjar = derive2 { name="jinjar"; version="0.1.1"; sha256="0vlgas4186ajgl83q7y2g8z6brlydc1f98hc1lxzl8zkikgm5mi9"; depends=[checkmate cpp11 fs jsonlite rlang]; }; jipApprox = derive2 { name="jipApprox"; version="0.1.3"; sha256="1dgawgvkpswv1mxjlqz4ip7vy2856fqvs24hkfl338jgap60grhp"; depends=[sampling]; }; jjb = derive2 { name="jjb"; version="0.1.1"; sha256="0y9yvnzg6xngz1fvzl5jm4yb1pg6wrp3id0gysv214wcznf3gna9"; depends=[]; }; jlctree = derive2 { name="jlctree"; version="0.0.2"; sha256="0l8piz0m9iv9lbw35yx1ww0db0pv0qhbvkz4l36fwjsgnjlh8f6a"; depends=[lme4 rpart survival]; }; @@ -11415,17 +11149,17 @@ in with self; { jointDiag = derive2 { name="jointDiag"; version="0.4"; sha256="18x6rxaxhz9hcp6rfmjlanbfsc5q61p6xcxixnc8ayyxbdq7q6rf"; depends=[]; }; jointMeanCov = derive2 { name="jointMeanCov"; version="0.1.0"; sha256="1cai5g63n11dirn9fldzkqxcnkxc20ndr9ygrr9rk0s1qz8x63pb"; depends=[glasso]; }; jointNmix = derive2 { name="jointNmix"; version="1.0"; sha256="0ibh7hqkpzlfk3bk4d2dd64jhr8cvw563k082vwnljiam7k5nj4b"; depends=[]; }; - jointPm = derive2 { name="jointPm"; version="2.3.1"; sha256="1c2cn9sqwfyv9ksd63w8rrz0kh18jm2wv2sfdkgncjb7vfs4hbv9"; depends=[]; }; jointseg = derive2 { name="jointseg"; version="1.0.2"; sha256="0zilkxk30w3l9mwikmsgvpy5misjggs98c3bjrjy1pfc4b0is943"; depends=[acnr DNAcopy matrixStats]; }; jomo = derive2 { name="jomo"; version="2.7-3"; sha256="0qq03zspmh8x2c8w882ynsw7wshr9b0fyrpwnqx5yc1xlzrqffcx"; depends=[lme4 MASS ordinal survival tibble]; }; jordan = derive2 { name="jordan"; version="1.0-1"; sha256="1d0my0lf8bmlmygz9f23skywzsrhy4xaykyrblbmhb00l0vxpa5s"; depends=[emulator mathjaxr onion]; }; josaplay = derive2 { name="josaplay"; version="0.1.3"; sha256="0q6kjk3mjxwbqvq3zz0ylpi1viznp9pxzngqpjzv5sibv0ndh0lf"; depends=[magrittr utf8]; }; jose = derive2 { name="jose"; version="1.2.0"; sha256="09k6wnnqlsbmlag4156rcsnavph52grqagkax9kd1sxgpknril3v"; depends=[jsonlite openssl]; }; - journalabbr = derive2 { name="journalabbr"; version="0.3.0"; sha256="1q1dmvx4b55bbd2qn920kmi962ignj2h36y7f22bqi5kcgzfgx9d"; depends=[dplyr httr knitr purrr rlang rmarkdown shiny stringi stringr tibble]; }; + journalabbr = derive2 { name="journalabbr"; version="0.3.1"; sha256="0dk1vlcbd84cvbjz73z6jhf8z9vf8rw1vh7y3p7cbsd404vj3mv5"; depends=[data_table dplyr httr purrr rlang shiny stringi stringr tibble]; }; joyn = derive2 { name="joyn"; version="0.1.4"; sha256="17x9rwcrqv7qx9w0cfyshjsij9cdl0fk13cfqbv0ibnc2nfycw87"; depends=[cli data_table glue rlang]; }; jpeg = derive2 { name="jpeg"; version="0.1-9"; sha256="0wihj538wdnr71wdldym83qadb4kh68a6rkallwbh2f25r27b881"; depends=[]; }; + jpgrid = derive2 { name="jpgrid"; version="0.2.0"; sha256="15a5gv3jw3r320rnvi5dpwp3psfq08v7im95jnwvk1b53pmabc87"; depends=[dplyr geosphere magrittr purrr rlang sf stars stringr tibble tidyr units vctrs]; }; jpmesh = derive2 { name="jpmesh"; version="2.1.0"; sha256="0q8adf582h92qwdwgh4dk53s8rixrrh96r8vzy6bwxvizqf0i3y8"; depends=[leaflet magrittr memoise miniUI purrr rlang sf shiny tibble units vctrs]; }; - jpstat = derive2 { name="jpstat"; version="0.2.0"; sha256="051mlyxd3xbik8fw1343xi72smmbaz6lvyn340m745y4jjx48006"; depends=[dplyr httr lubridate navigatr pillar progress purrr rlang stringi stringr tibble tidyr vctrs]; }; + jpstat = derive2 { name="jpstat"; version="0.2.1"; sha256="1z7j5q081gs0qh7x0dcb4mrqmvnzymhmrbw3m0xs85sx5v88akca"; depends=[dplyr httr lubridate navigatr pillar progress purrr rlang stringi stringr tibble tidyr vctrs]; }; jqr = derive2 { name="jqr"; version="1.2.3"; sha256="1a91zcjxdilhqdyr2lipnwc35f90h0wyqlbg0vw9ay7sq6llxgs9"; depends=[lazyeval magrittr]; }; jquerylib = derive2 { name="jquerylib"; version="0.1.4"; sha256="04a40v4znpj98j7y6009d74a6g9dchj5rr3p08cgz9p3rlfw3g7h"; depends=[htmltools]; }; jrc = derive2 { name="jrc"; version="0.5.1"; sha256="0lg647nfijj6grlmwkasd6di5h6286dxmw1373k6n5gwym1g1l36"; depends=[httpuv jsonlite mime R_utils R6 stringi stringr]; }; @@ -11447,8 +11181,8 @@ in with self; { jsonvalidate = derive2 { name="jsonvalidate"; version="1.3.2"; sha256="0myvm93azl6mj60l8fp91qa3ln3nnwj4p48xli8k215sm6zhhv1b"; depends=[V8]; }; jstable = derive2 { name="jstable"; version="1.0.7"; sha256="1hs202z49aazsadr0jb67wk43i18y3h1aw0xflfmvirxjxr63xm8"; depends=[coxme data_table dplyr geepack labelled lme4 magrittr purrr survey survival tableone tibble]; }; jstor = derive2 { name="jstor"; version="0.3.10"; sha256="0k2y3h01yra8yns97j4yyxa1jmclrd6z5xxiv4m8da5q5cgkc970"; depends=[cli crayon dplyr furrr magrittr pryr purrr readr rlang stringr tibble tidyr xml2]; }; - jti = derive2 { name="jti"; version="0.8.3"; sha256="1bys01nd4smihm98g6ldfvglj3ba10006qkkxamnf0i3kvm2v6cf"; depends=[igraph Rcpp RcppArmadillo sparta]; }; - jtools = derive2 { name="jtools"; version="2.1.4"; sha256="1zbzhr7bz735b8pvqjxhqnmh3sl12xvpz5fpkmjngvwi4yz5873r"; depends=[crayon generics ggplot2 magrittr pander pkgconfig rlang tibble]; }; + jti = derive2 { name="jti"; version="0.8.4"; sha256="0jxqv3xa9yyzizx1rhxjv65c8b253shridy57skrd5kya701n460"; depends=[igraph Rcpp RcppArmadillo sparta]; }; + jtools = derive2 { name="jtools"; version="2.2.0"; sha256="1aafnjmldg01c25psi47xnqrf5p7kjfcffjknghgw6dczjpn500f"; depends=[crayon generics ggplot2 magrittr pander pkgconfig rlang tibble]; }; jtrans = derive2 { name="jtrans"; version="0.2.1"; sha256="18zggqdjzjhjwmsmdhl6kf35w9rdajpc2nffag4rs6134gn81i3m"; depends=[]; }; jubilee = derive2 { name="jubilee"; version="0.3.3"; sha256="1j2y44pfx9z2k169lh42b4dnfrrnk8jqsjn3wz4l9iscr6r91lx7"; depends=[data_table dplyr readxl xts yaml zoo]; }; juicr = derive2 { name="juicr"; version="0.1"; sha256="0vkbgbagcgaxj6k62b033ik85jnkzvshg8dm9cz7vq4yjqj3icip"; depends=[RCurl XML]; }; @@ -11474,7 +11208,7 @@ in with self; { karaoke = derive2 { name="karaoke"; version="1.0"; sha256="1kx11lijdffhhh8prjgsamshgg2v29b2i129fjqi079waa335352"; depends=[seewave tuneR]; }; karel = derive2 { name="karel"; version="0.1.1"; sha256="0nvzvd8aq0sipcvn8agjjd2k1wykpgc99nrrk2cxrlvsjbpd2w52"; depends=[dplyr gganimate ggplot2 gifski magrittr purrr tidyr]; }; katex = derive2 { name="katex"; version="1.4.0"; sha256="0kgz2qck90h9kaxvy40nii03ib02z757bmw8sgacik82hmj0fxx8"; depends=[V8]; }; - kayadata = derive2 { name="kayadata"; version="1.0.0"; sha256="1zmdwds1p430770426lhwhffissb44x27wqh1vbz7z52ma0h7l91"; depends=[dplyr forcats ggplot2 magrittr scales stringr tidyr]; }; + kayadata = derive2 { name="kayadata"; version="1.1.0"; sha256="014g10sa7nqgar5ljx8y9fkpyl3lzlpi7c11kb2dr57hsq4fknq3"; depends=[dplyr forcats ggplot2 magrittr purrr scales stringr tidyr]; }; kazaam = derive2 { name="kazaam"; version="0.1-0"; sha256="0j7vysnmiv9sggcxdn3nrgfvyl52pza4kkjnsa0xlb3fzq9qpwlz"; depends=[pbdMPI]; }; kcirt = derive2 { name="kcirt"; version="0.6.0"; sha256="1gm3c89i5dq7lj8khc12v30j1c0l1gwb4kv24cyy1yw6wg40sjig"; depends=[corpcor mvtnorm snowfall]; }; kcopula = derive2 { name="kcopula"; version="0.1.0"; sha256="07ddrq4lxp8i6n7c7ac7x9mdg9gfmlh7bv3n34qalwv0a6fa061w"; depends=[pracma]; }; @@ -11482,7 +11216,6 @@ in with self; { kde1d = derive2 { name="kde1d"; version="1.0.4"; sha256="0mj5pd353k7bqabiryy6ss2ifq1nfxlsl2vyld6d53z04zjb4khj"; depends=[BH randtoolbox Rcpp RcppEigen]; }; kdecopula = derive2 { name="kdecopula"; version="0.9.2"; sha256="0g5c12wm3byd4chd8i9mxv599gsf4ip4qghx83j3mmhsmn05zf4y"; depends=[lattice locfit qrng quadprog Rcpp RcppArmadillo]; }; kdensity = derive2 { name="kdensity"; version="1.1.0"; sha256="07d1p3ysdm66a9sf0gih5xjb3wfab44c3sr8aaraz22s2a9q9b55"; depends=[assertthat EQL univariateML]; }; - kdetrees = derive2 { name="kdetrees"; version="0.1.5"; sha256="1plf2yp2vl3r5znp5j92l6hx1kgj0pzs7ffqgvz2nap5nf1c6rdg"; depends=[ape distory ggplot2]; }; kdevine = derive2 { name="kdevine"; version="0.4.3"; sha256="1m8bx1bcbq1wz2ww4pjk3cy9in8a5vj4n6asvw9qgyddy7f5iib1"; depends=[cctools doParallel foreach kdecopula KernSmooth MASS qrng Rcpp VineCopula]; }; kdist = derive2 { name="kdist"; version="0.2"; sha256="18q7njvsb9sbm412c6ms4b4nxg768z9qahws5rnin06gvb25nfcx"; depends=[]; }; kdpee = derive2 { name="kdpee"; version="1.0.0"; sha256="1vrpr1rkk0ypl5yi3cjgw0fglyx9r2fbcq21n172ax0w3kdyflgk"; depends=[checkmate]; }; @@ -11492,7 +11225,7 @@ in with self; { kehra = derive2 { name="kehra"; version="0.1"; sha256="1cc0bmbg0dncay50ap7cs2516qngzz3ddaab0jk5r6lwfq87h8qx"; depends=[Hmisc raster reshape2 sp stringr xts zoo]; }; kelvin = derive2 { name="kelvin"; version="2.0-2"; sha256="0hjycqga3yjrzpgc911nk64nsjrpim4v7219f7iwi1snx0ydhqzf"; depends=[Bessel]; }; kendallRandomWalks = derive2 { name="kendallRandomWalks"; version="0.9.4"; sha256="1mfqblvsn9p6gdcnbypfpzk0xzn6bz1ajbrkz2dap5w35dia3kxa"; depends=[actuar dplyr ggplot2 tibble]; }; - kequate = derive2 { name="kequate"; version="1.6.3"; sha256="1ii3wlypm2qqkfxr3z1sdnmgc43h2zzlw6v4h2xxjdlznzxkp3mr"; depends=[equateIRT ltm mirt]; }; + kequate = derive2 { name="kequate"; version="1.6.4"; sha256="0zlc1n69908011zz5aydcl41apg6l0l3dvmsm3fgpnr1vm76g9y1"; depends=[equateIRT ltm mirt]; }; kerTests = derive2 { name="kerTests"; version="0.1.3"; sha256="0981q4n4wrv62x4b8jccj5hx58n975rls3sn3s0mz7ajhh1xxbi9"; depends=[]; }; keras = derive2 { name="keras"; version="2.8.0"; sha256="10zvy4lmhb2sbn0gsm12pf95pxj9bmi8241ap1n6170xsld9phcf"; depends=[ellipsis generics glue magrittr R6 reticulate rlang tensorflow tfruns zeallot]; }; kerasR = derive2 { name="kerasR"; version="0.6.1"; sha256="1yi7710vgcwz0jhishbga41sc6qyk83a0avmq01dvqjsz3cdfsfc"; depends=[reticulate]; }; @@ -11558,15 +11291,14 @@ in with self; { kml = derive2 { name="kml"; version="2.4.1"; sha256="1my9gcripiqc6iphycjr3srj8qxy05yvd0648vblygrx2qym5hy2"; depends=[clv longitudinalData]; }; kml3d = derive2 { name="kml3d"; version="2.4.2"; sha256="1a3hqyhrsh12l1j1xlz4zy88impw3biz6w2qc80r11m549h0m6s9"; depends=[clv kml longitudinalData misc3d rgl]; }; kmlShape = derive2 { name="kmlShape"; version="0.9.5"; sha256="1p35ihjq84jnzq78yksdblc0c1qcn13f8n4khddsxcqvk3a44xb1"; depends=[class kml lattice longitudinalData]; }; - kmodR = derive2 { name="kmodR"; version="0.1.0"; sha256="1y1pqrrralklflyb1dw8bslfcyqrw8ryijfbhkwba7ykpxcf9fda"; depends=[]; }; + kmodR = derive2 { name="kmodR"; version="0.2.0"; sha256="1khp383k5rr7nnn1fih7wfw6k202igxcj3ddwawyp895qa9w12cj"; depends=[]; }; knitLatex = derive2 { name="knitLatex"; version="0.9.0"; sha256="1igacc2sx8897wmnhh8kngd0fq6zqbi30chy5c8jw60zc38mi3wi"; depends=[knitr]; }; knitcitations = derive2 { name="knitcitations"; version="1.0.12"; sha256="1c7pl8jh61pv0brqanmyfy6s0ipxn312b2hjypcsjaph6b8mhj2q"; depends=[digest httr RefManageR]; }; - knitr = derive2 { name="knitr"; version="1.38"; sha256="1bg7nmd2bvfd2gscp4nly4a2c05bpgzq536bmmf93vaf860yhf6i"; depends=[evaluate highr stringr xfun yaml]; }; + knitr = derive2 { name="knitr"; version="1.39"; sha256="0wmcj6xv0bcqzmp5vm8s574rfx366rkgm03lgyppk9ywxgnna6n9"; depends=[evaluate highr stringr xfun yaml]; }; knitrBootstrap = derive2 { name="knitrBootstrap"; version="1.0.2"; sha256="1aj60j7f0gcs120fdrnfbnb7vk7lfn1phil0mghg6a5zldz4cqs3"; depends=[knitr markdown rmarkdown]; }; knitrProgressBar = derive2 { name="knitrProgressBar"; version="1.1.0"; sha256="18v5jrscfrin3mcs63bpj0q1drxk3zkhlbw93sqh0qrq04d4x02v"; depends=[R_oo R6]; }; knitrdata = derive2 { name="knitrdata"; version="0.6.1"; sha256="1am79r4rkrw7vjmyzc0cq4p52l2ypdw99rfhrvdsaq11yllx08mx"; depends=[knitr xfun]; }; knn_covertree = derive2 { name="knn.covertree"; version="1.0"; sha256="0msfcmwydws7q7m5jdb0dxab0nkbl7mq5llg6v3r4qrnlvrdggvz"; depends=[Matrix Rcpp RcppEigen]; }; - knnIndep = derive2 { name="knnIndep"; version="2.0"; sha256="1fwkldgs2994svf3sj90pwsfx6r22cwwa22b30hdmd24l8v9kzn7"; depends=[]; }; knnp = derive2 { name="knnp"; version="2.0.0"; sha256="0qgq8la3zndlb1wwqv9b2kw52y9ns36pi4ds68pkm81bhzq5nqis"; depends=[doParallel foreach forecast parallelDist plyr]; }; knnwtsim = derive2 { name="knnwtsim"; version="1.0.0"; sha256="1sxz1hzbx41z3w1qf2zf8fmf3pd64jrnc37ndxx28yc70vhwjd1n"; depends=[]; }; knockoff = derive2 { name="knockoff"; version="0.3.5"; sha256="00nh1wwj66krdng4afxkv0c0xyi5lk6f2g8iwzcd7c5l5ladab7y"; depends=[corpcor glmnet gtools Matrix Rdsdp RSpectra]; }; @@ -11574,7 +11306,7 @@ in with self; { kntnr = derive2 { name="kntnr"; version="0.4.4"; sha256="1af5qhj82dixf1qcbz3sfj52pzgy8gnafzifwxnhrp7vpn4rnv6m"; depends=[base64enc dplyr httr jsonlite lubridate purrr rlang rstudioapi stringr tibble tidyr]; }; koRpus = derive2 { name="koRpus"; version="0.13-8"; sha256="0r9a2fzi3w53kixcjzbij8qmmkjl2p53dazys34s0czb5qrlm6hf"; depends=[data_table Matrix sylly]; }; koRpus_lang_en = derive2 { name="koRpus.lang.en"; version="0.1-4"; sha256="1faj065wjj7a68i57y7zmrrj4ckp01gvq8qknf6a56idi8kzr732"; depends=[koRpus sylly_en]; }; - kofdata = derive2 { name="kofdata"; version="0.1.5"; sha256="0l0fiamhx4qqqpfafjf8ksnj37q2ynj45b025vvy4q6y286i0w7j"; depends=[httr jsonlite xts zoo]; }; + kofdata = derive2 { name="kofdata"; version="0.2"; sha256="1gxw85pliyw2sc4d5108z5097x95gcxdsphc028lj4bh5y24fmzz"; depends=[httr jsonlite xts zoo]; }; kofnGA = derive2 { name="kofnGA"; version="1.3"; sha256="0w0881ydnqdah04sifi25ypzxdwnsiqxfq1xam4yhr670bdak1vm"; depends=[bigmemory]; }; kohonen = derive2 { name="kohonen"; version="3.0.11"; sha256="1bk3j0n8w4fhffv89rgyn4n21c0wcx6lr8jv4wbagpxprl585381"; depends=[Rcpp]; }; kokudosuuchi = derive2 { name="kokudosuuchi"; version="1.0.0"; sha256="0h4r7bd9989pahx34lc2i5h1f8nipir941l7sahhgz28lskfkc3h"; depends=[glue rlang sf stringr tibble]; }; @@ -11586,11 +11318,11 @@ in with self; { kpmt = derive2 { name="kpmt"; version="0.1.0"; sha256="15d26khc0v3kc1c7l1avqp48pfqmc6xj32029mv7myivr41ashk3"; depends=[matrixStats]; }; kpodclustr = derive2 { name="kpodclustr"; version="1.1"; sha256="1gwy59sh4gp06hr3il3hz0iiwdrzrlya5b026qxvz5q62msf6q5a"; depends=[]; }; kriens = derive2 { name="kriens"; version="0.1"; sha256="1qi65k9fsbbkbw0w40rv60p5ygrvr10rmlyxdaqa5bdpcmrbly5z"; depends=[]; }; - krige = derive2 { name="krige"; version="0.6.1"; sha256="0xcx7glarqjb25bchs3wflw5lyy9xrbksirrdm35vdsxgif62ydz"; depends=[coda Rcpp]; }; + krige = derive2 { name="krige"; version="0.6.2"; sha256="03xqj8aqlxxxpxadrl64rxxz79k062bx953z958wg3adjip776q4"; depends=[coda Rcpp]; }; kriging = derive2 { name="kriging"; version="1.1"; sha256="04bxr34grf2nlrwvgrlh84pz7yi0r8y7dc2wk0v5h5z6yf5a085w"; depends=[]; }; - krippendorffsalpha = derive2 { name="krippendorffsalpha"; version="1.1-1"; sha256="1vaqwimlmbxh2jy08f3bkpb9r4fz6gkx6cpzjkgiyspjaqhc8a1a"; depends=[]; }; + krippendorffsalpha = derive2 { name="krippendorffsalpha"; version="1.1-2"; sha256="0swhwml6r5cwbrsbqifjdhq85mfgj24v08zx70hr8y2xc47bdl3z"; depends=[]; }; krm = derive2 { name="krm"; version="2020.5-20"; sha256="1b6477cjv5k30djvrlbmwn91ghgwk24cfd58cb0q80xqhgiqvrzb"; depends=[kyotil]; }; - ks = derive2 { name="ks"; version="1.13.4"; sha256="15sm1ys7sk0gn7hr1vik4xrn4jdf837knwk7j8h32lr29w9mh917"; depends=[FNN kernlab KernSmooth Matrix mclust mgcv multicool mvtnorm plot3D pracma]; }; + ks = derive2 { name="ks"; version="1.13.5"; sha256="05bqrjkbx2kn5aax0hy3xd6pf7nxka9bm1sp8ll1cc2gf1nx1i6i"; depends=[FNN kernlab KernSmooth Matrix mclust mgcv multicool mvtnorm plot3D pracma]; }; ksNN = derive2 { name="ksNN"; version="0.1.2"; sha256="06x471hck95xqy7rbh53ibhzh6kfjra7y9ipqdj2rqdkmfdj72q8"; depends=[Rcpp]; }; kselection = derive2 { name="kselection"; version="0.2.0"; sha256="1arg96r2pldvb89rfqnfpjxwksyac2mhmbimbkwzm7wrnbnrcn5d"; depends=[]; }; ksharp = derive2 { name="ksharp"; version="0.1.0.1"; sha256="1dnkj838y8c1b53mlljhjqs3nd864i9xcqsv9n4fw28b4br9m570"; depends=[]; }; @@ -11601,7 +11333,6 @@ in with self; { ktaucenters = derive2 { name="ktaucenters"; version="0.1.0"; sha256="15ddjr4c90b5hc4977gk35zb2kswrcvai3xighy7qj6g9lgiszgf"; depends=[dbscan dplyr GSE MASS]; }; ktsolve = derive2 { name="ktsolve"; version="1.3"; sha256="0brxqb60m1lyqhsmds1c3c6cmbcxlzk2nwvi0fhkc8ziwzlfmd09"; depends=[BB nleqslv]; }; kuiper_2samp = derive2 { name="kuiper.2samp"; version="1.0"; sha256="0gcgayh7qdic9zprdvs6r8qvpqs467zrm0qzp2acb7alcp01jhpi"; depends=[]; }; - kulife = derive2 { name="kulife"; version="0.1-14"; sha256="070ayy6fr9nsncjjljikn2i5sp2cx3xjjqyc64y2992yx74jgvvd"; depends=[]; }; kutils = derive2 { name="kutils"; version="1.70"; sha256="06jk66wbq3jmdf2jdhqns6r3yk36l2x7c907x977zv80sqxa1l37"; depends=[foreign openxlsx plyr RUnit xtable]; }; kvh = derive2 { name="kvh"; version="1.4.2"; sha256="0lx7p2rgvcjgg99chcan0qb9hafx226sqvdb1g1xpkdwvzbyxci8"; depends=[Rcpp]; }; kwb_hantush = derive2 { name="kwb.hantush"; version="0.3.0"; sha256="1rlm7i95yw66asgkag93phig2y9lic4xl2fv3cbnr3v751f6a59m"; depends=[hydroGOF lattice]; }; @@ -11618,15 +11349,13 @@ in with self; { label_switching = derive2 { name="label.switching"; version="1.8"; sha256="0xwwhn249aibip12yxjwlrpyqj6zvc95zc7n9jf2vjjpashyc3yk"; depends=[combinat lpSolve]; }; labelVector = derive2 { name="labelVector"; version="0.1.2"; sha256="06pqkgn852min2mqhjkia6qqdwkp8cz32lbxzp3a2b8bcggbijn4"; depends=[]; }; labeling = derive2 { name="labeling"; version="0.4.2"; sha256="0rfikd9gy70b8qz87q9axcwv8nmn9mbxfdwypxi0sghpfs9df8p0"; depends=[]; }; - labelled = derive2 { name="labelled"; version="2.9.0"; sha256="0ffnhlr239nqcwb35m4hll21abnnhpmyy5wlxnyahrg0kqb0xb1n"; depends=[dplyr haven lifecycle rlang stringr tidyr vctrs]; }; + labelled = derive2 { name="labelled"; version="2.9.1"; sha256="0h7scbyzh7kr51gds222rkhld2b3k36s86hj8rrzpwv4bwj0pccy"; depends=[dplyr haven lifecycle rlang stringr tidyr vctrs]; }; labelmachine = derive2 { name="labelmachine"; version="1.0.0"; sha256="18l7argmf7d60cv34w7acjg4bk08nhi2cc5p61sx2zmq28v8nndr"; depends=[yaml]; }; - labelrank = derive2 { name="labelrank"; version="0.1"; sha256="03pmpkjdhgw80473kdzdz4s4828pa8f5bja2zqicxrhvyvicvz6f"; depends=[pdist]; }; labourR = derive2 { name="labourR"; version="1.0.0"; sha256="0skr8qr1m849l3gpcsn5bjxyjczlzzmsm2j6xcmxv33lf95qg6gi"; depends=[cld2 data_table magrittr stopwords stringdist]; }; labsimplex = derive2 { name="labsimplex"; version="0.1.2"; sha256="07is5vi1y7qw9fjhhjf65z6fm77v26qgy908zhhp2581qqyn0b5s"; depends=[ggplot2 scatterplot3d]; }; labstatR = derive2 { name="labstatR"; version="1.0.11"; sha256="0blyx2k4za0af72javswmpag2nks1cvgpyp1zabx8vzk38k0si1n"; depends=[]; }; labstats = derive2 { name="labstats"; version="1.0.1"; sha256="1780slp9l1rqwr5ika6hv606jzbaa3g1ywzkjkd3ff2gb0cby3ni"; depends=[]; }; lacm = derive2 { name="lacm"; version="0.1.1"; sha256="01zd4zsas60kzxx4wsnxs6qqc72i4djwj8m7ryjyx5nrxgpjaixc"; depends=[numDeriv statmod]; }; - lacrmr = derive2 { name="lacrmr"; version="1.0.3"; sha256="0zpfc4a7krwkwbf31idpmdzks4qassqnhxk1f9fcq1qjzqzhjkvi"; depends=[dplyr httr janitor jsonlite magrittr sjmisc stringr]; }; lactater = derive2 { name="lactater"; version="0.1.0"; sha256="0g3hl8q3rdxpn8m4yngmlswyqlnlgj528amn26msybcjzp7r2dbz"; depends=[broom dplyr forcats ggplot2 ggtext lubridate magrittr minpack_lm patchwork pracma rlang segmented stringr tidyr]; }; lactcurves = derive2 { name="lactcurves"; version="1.1.0"; sha256="1ksllpgz519gzrs8gwfgg7743vj3j7ikmbwgisdjs77sdxxl7xyz"; depends=[orthopolynom polynom]; }; lacunaritycovariance = derive2 { name="lacunaritycovariance"; version="1.1-3"; sha256="0rf74mxylg9j5apcxk40wyfbwgsjwh322kc6wxbqxm4rgscs6shw"; depends=[RcppRoll spatstat spatstat_core spatstat_geom spatstat_random]; }; @@ -11638,10 +11367,9 @@ in with self; { lamW = derive2 { name="lamW"; version="2.1.1"; sha256="05b37kx4jpszx2hkm47d7cjkf8544f7r8x26q68yp9c6zqm9gbc3"; depends=[Rcpp RcppParallel]; }; lambda_r = derive2 { name="lambda.r"; version="1.2.4"; sha256="1mh1g0gsd58gng0hb29vww2yqb2jfs07kba5kxnnqck5j3izwlnj"; depends=[formatR]; }; lambdaTS = derive2 { name="lambdaTS"; version="1.1"; sha256="0fb44q5997588y6cv10kq3jv3qvwhg99q15i4cka4hsww08i9ib2"; depends=[abind bizdays car fANCOVA ggplot2 imputeTS lubridate modeest narray purrr readr scales stringr tictoc torch]; }; - lambdr = derive2 { name="lambdr"; version="1.1.0"; sha256="02piqnw1n444sa396bbmplf3br7bh70qkn4dwvkzxj558ddv9l83"; depends=[httr jsonlite logger]; }; + lambdr = derive2 { name="lambdr"; version="1.2.0"; sha256="1a8cvw51g4d2bdklvmgmn488bj42r1vrs0qwj0qd36sl9ncqrqc5"; depends=[httr jsonlite logger]; }; lamme = derive2 { name="lamme"; version="0.0.1"; sha256="1x9jl79iqikpjixajly1k8w2nkzskns2m0v242giknl0ikw298h1"; depends=[]; }; landest = derive2 { name="landest"; version="1.1"; sha256="1gcjxn9g3zq37glb92xgv2r9w5yq6hwsmgfmv2ijr66lla0qxsf4"; depends=[survival]; }; - landmap = derive2 { name="landmap"; version="0.0.13"; sha256="04pycbi0pf2n92xzs650h2dc8yzqfvaxn8m6yxqprf3y7qjgys9c"; depends=[forestError gdalUtils geoR glmnet kernlab maptools matrixStats mlr nnet parallelMap ParamHelpers plyr ranger raster rgdal rpart sp spdep xgboost]; }; landpred = derive2 { name="landpred"; version="1.1"; sha256="074zzlwj1pml7v7y47z67j5sp3xvsngsf0asan613q1bpvc4yq49"; depends=[survival]; }; landsat = derive2 { name="landsat"; version="1.1.0"; sha256="15ymmwhkgw0lqyy2sryss3nsmkrjf4cc0bzlsr41vh5c2636srfd"; depends=[lmodel2 mgcv rgdal sp]; }; landsat8 = derive2 { name="landsat8"; version="0.1-10"; sha256="169b5ka98ka9chbmksz6syaygc9wgl8i2gz1h2xkxj3lk9jcg01r"; depends=[rgdal sp]; }; @@ -11649,7 +11377,7 @@ in with self; { landscapemetrics = derive2 { name="landscapemetrics"; version="1.5.4"; sha256="1qsm0h6lcg4a7s6g1am305rcxbrrf2hb6ypd29g5k7kj80fwg1rl"; depends=[cli ggplot2 raster Rcpp RcppArmadillo sp tibble]; }; landscapetools = derive2 { name="landscapetools"; version="0.5.0"; sha256="11zp6r414nkj8vhsbryzhkxmpal2bva8msaxf1v69xax70ilxyf1"; depends=[ggplot2 raster Rcpp tibble]; }; landsepi = derive2 { name="landsepi"; version="1.1.2"; sha256="18mgscfc21rl4fdsrhw06ydrd29w2wwfn69lm3cvw4illb2vn64r"; depends=[DBI doParallel fields foreach Matrix mvtnorm Rcpp RSQLite sf sp splancs testthat]; }; - langevitour = derive2 { name="langevitour"; version="0.2"; sha256="0bzaskhx68x1vbxinsn8fi7y0332wikaig4ia44scbyywm4vhc5y"; depends=[htmlwidgets]; }; + langevitour = derive2 { name="langevitour"; version="0.4"; sha256="09c209galrv69fl8rdj405y4aidz59x93wqhplgmh50vfwhxlpzc"; depends=[htmlwidgets RANN]; }; languageR = derive2 { name="languageR"; version="1.5.0"; sha256="1iipnr2b4hd2w718prbh075j56m5xnchlcb2vg26m16qpydp6afn"; depends=[]; }; languagelayeR = derive2 { name="languagelayeR"; version="1.2.4"; sha256="1q82shdcdd84nr6bnfwgyyb81z8dycvj1i3vhwvdg710s15rgiyk"; depends=[attempt curl httr jsonlite]; }; languageserver = derive2 { name="languageserver"; version="0.3.12"; sha256="0dmsjnn84r3wlzrf91xwxcwi4y9vcrwiymz14ixw0jc0kys185a3"; depends=[callr collections fs jsonlite lintr R6 roxygen2 stringi styler xml2 xmlparsedata]; }; @@ -11658,15 +11386,14 @@ in with self; { lar = derive2 { name="lar"; version="0.1-2"; sha256="0qda0y4ag10kg83wxs3z754kc8c1dg2rwciy64klk7an4ln43i5b"; depends=[data_table treemap xlsx]; }; lares = derive2 { name="lares"; version="5.1.2"; sha256="1s24wkh88lln4h93acpldjahf1d57n6zl1szvq7ihynylb03h6xd"; depends=[dplyr ggplot2 h2o httr jsonlite lubridate openxlsx patchwork pROC rlang rpart rpart_plot rvest stringr tidyr yaml]; }; largeList = derive2 { name="largeList"; version="0.3.1"; sha256="0csijzlxajj0rh24w5n7fs6ss301zr6zfv5khyq4a9g437bwhc2i"; depends=[]; }; - lars = derive2 { name="lars"; version="1.2"; sha256="0blj44wqrx6lmym1m9v6wkz8zxzbjax2zl6swgdczci0ixb5nx34"; depends=[]; }; + lars = derive2 { name="lars"; version="1.3"; sha256="17al1g0pvfz9frs2kxicqr8dyp7ciz3x87yx2l4lqd53ls6nm7n6"; depends=[]; }; lasso2 = derive2 { name="lasso2"; version="1.2-22"; sha256="1l87djh539m444p5nl9975dd3v5nc7j8af9rj4xr54h5d0mbcbjv"; depends=[]; }; lassopv = derive2 { name="lassopv"; version="0.2.0"; sha256="0yawnjw063jypk3riy9xab9cmliv6c9dnabi18670khd3gzb2r9z"; depends=[lars]; }; lassoscore = derive2 { name="lassoscore"; version="0.6"; sha256="1i3i07da8sw9w47rcflhylz8zxvzkyycbc1a4gf6hbcpp21rqd7d"; depends=[glasso glmnet Matrix]; }; lassoshooting = derive2 { name="lassoshooting"; version="0.1.5-1.1"; sha256="1hc05irjwcw54hdrdbwsxfr5b0qq7dysvybzm04jyixqs5b2m8wx"; depends=[]; }; latdiag = derive2 { name="latdiag"; version="0.3"; sha256="13wk8vhiwr9drcx5f4wlgbin6hc83zv54yr4h3qhjagm3hxcxbw0"; depends=[Rdpack]; }; - latentcor = derive2 { name="latentcor"; version="1.2.0"; sha256="1kqsiaz84cln6l6ajzn2grrc6bch7pfsrr39l2jvkmcnp8n5cimi"; depends=[chebpol fMultivar ggplot2 heatmaply MASS Matrix mnormt pcaPP plotly]; }; latentgraph = derive2 { name="latentgraph"; version="1.1"; sha256="11h7nrd81licvdikiwwfkz4x9i7drz09w5ns672b7fw0pj4qqgsr"; depends=[glmnet MASS pracma Rcpp RcppArmadillo]; }; - latentnet = derive2 { name="latentnet"; version="2.10.5"; sha256="05yjf7a16imv1p2lg5dmfk183xll49crnkg0mbz4c4b39nksy85v"; depends=[abind coda ergm MASS mvtnorm network sna statnet_common]; }; + latentnet = derive2 { name="latentnet"; version="2.10.6"; sha256="0zkh75cvsiprxfbrzyqi72wvsljxzsifcd71kyrr2m761v3sqm16"; depends=[abind coda ergm MASS mvtnorm network sna statnet_common]; }; later = derive2 { name="later"; version="1.3.0"; sha256="0acqg29hcm2iq1418b54np7zb5pnr3xzrwc3ijv2pz9wra10ix88"; depends=[Rcpp rlang]; }; latex2exp = derive2 { name="latex2exp"; version="0.9.4"; sha256="0zbbrbgg524lpm733j8qsqk5ssg75c51s6dgzb18c6fk8byrx945"; depends=[magrittr stringr]; }; latexdiffr = derive2 { name="latexdiffr"; version="0.1.0"; sha256="021lhswy8nik2h1951h1affg8x5lchsa2amyx7fwrajp4bgq72yk"; depends=[fs rprojroot]; }; @@ -11697,6 +11424,7 @@ in with self; { lazysf = derive2 { name="lazysf"; version="0.1.0"; sha256="19g0qzm0dxsa8m4dj4zmz8r674dw43pqs5gg6n3xfgm5dl9772jb"; depends=[DBI dbplyr dplyr magrittr sf tibble]; }; lazysql = derive2 { name="lazysql"; version="0.1.3"; sha256="18vff80rl8ckjwfqi9dhzs1q35a1wrxvynidji6dy2kvvk38xnpa"; depends=[checkmate magrittr plyr]; }; lazytrade = derive2 { name="lazytrade"; version="0.5.3"; sha256="055wyaf36f5g27wly24i0sbf2k0rriga8xcgn241gszlzagrnh55"; depends=[cluster dplyr ggplot2 h2o lifecycle lubridate openssl readr ReinforcementLearning stringr tibble]; }; + lba = derive2 { name="lba"; version="2.4.5"; sha256="1k6zygbsn5cs584hcfqh6h7sk0sdwr970hp6xdcih7nxdp45vjj9"; depends=[alabama MASS plotrix rgl scatterplot3d]; }; lbfgs = derive2 { name="lbfgs"; version="1.2.1"; sha256="0p99g4f3f63vhsw0s1m0y241is9lfqma86p26pvja1szlapz3jf5"; depends=[Rcpp]; }; lbfgsb3c = derive2 { name="lbfgsb3c"; version="2020-3.2"; sha256="07mhiaxhjjma5c65z3pz7wchgsqn4b19labzyq25ncnmj319fxrg"; depends=[numDeriv Rcpp RcppArmadillo]; }; lbiassurv = derive2 { name="lbiassurv"; version="1.1"; sha256="1i6l3y4rasqpqka7j39qjx22wjbilgc9pkp05an52aysfvfxy193"; depends=[actuar]; }; @@ -11704,13 +11432,12 @@ in with self; { lboxcox = derive2 { name="lboxcox"; version="1.0"; sha256="1fvi8gmnajj6nl9dlg5056mx4yblra54c18l62f5yy5wd7byr18x"; depends=[doParallel foreach maxLik survey]; }; lbreg = derive2 { name="lbreg"; version="1.3"; sha256="1z9vixf6sl0k9lizngc3859lk32srkk1d8y133sl6s37ppmqb4s2"; depends=[MASS]; }; lcars = derive2 { name="lcars"; version="0.3.7"; sha256="1hjlcl57aazcm5hgjiwmi116rk13z2gr65mpgcvyc0p9xih8bvdf"; depends=[ggplot2 shiny trekcolors]; }; - lcc = derive2 { name="lcc"; version="1.1.3"; sha256="0hbv0nv421ldk10b4qr8dq7ww4w1342sl3s8gw0slfigxbbxv4bh"; depends=[doRNG doSNOW foreach ggplot2 hnp nlme]; }; lcda = derive2 { name="lcda"; version="0.3.1"; sha256="0zd0692qspya0ynh5722pbn9mpyf48474pm10dzg4qhl3k4rmmsh"; depends=[poLCA]; }; lchemix = derive2 { name="lchemix"; version="0.1.0"; sha256="1g2w57fi6kvsyir14hnxh0v6xwjdnbisafvjxvn1g6a4h55dg9i0"; depends=[MCMCpack mvtnorm]; }; lclGWAS = derive2 { name="lclGWAS"; version="1.0.3"; sha256="03b6ijqvyirv96hc3dsqf4f0zzqlmq5451mcb14d2mw3s6xy1vmq"; depends=[BH Rcpp]; }; lcmm = derive2 { name="lcmm"; version="1.9.5"; sha256="0c88hy8bqkf2h8a6q06l5sk294g68hkwniv3dv6c4nf9dazvzi7n"; depends=[mvtnorm nlme randtoolbox survival]; }; lconnect = derive2 { name="lconnect"; version="0.1.1"; sha256="1lx0z72aiy2hbh0wxn3ni3dyr3s2v8xirkvszlxvgfzkfmjx05j5"; depends=[igraph sf]; }; - lcopula = derive2 { name="lcopula"; version="1.0.4"; sha256="11rjymm4zj3brifzrrfwqv9v8rzkzqk072xlzyjxm2p08dd11xxb"; depends=[copula pcaPP Rcpp]; }; + lcopula = derive2 { name="lcopula"; version="1.0.5"; sha256="1q45l5k2892ivzwp3h30z02j6w7nf4k4k7xfh22vy8q2zrv718jp"; depends=[copula Rcpp]; }; lcpm = derive2 { name="lcpm"; version="0.1.1"; sha256="0pqmizli5rhyaxvxrjycf8d5kqrm23i3vdz00r8zmijjpiz2p9s2"; depends=[Matrix numDeriv plyr]; }; lcra = derive2 { name="lcra"; version="1.1.2"; sha256="1kyjzb5ss64pg1sdnc8h7npcf4hsfgf4hhqh2yxl50d2zf4a4iyl"; depends=[coda rjags rlang]; }; lcsm = derive2 { name="lcsm"; version="0.1.2"; sha256="1933n9wsyids0pfdmv2anglsxi2ibp5k14ifcvp4kmr1rq8wym7s"; depends=[broom data_table dplyr ggplot2 lavaan magrittr purrr rlang semPlot stringr tibble tidyr utf8]; }; @@ -11731,20 +11458,19 @@ in with self; { leaderCluster = derive2 { name="leaderCluster"; version="1.2"; sha256="1lqhckarqffm2l3ynji53a4hrfn0x7zab7znddia76r2h6nr02zb"; depends=[]; }; leafR = derive2 { name="leafR"; version="0.3.5"; sha256="02kimgffynf7nx164g1vw30wcv2plr7a5gf27q4x87c9c8b0cb1b"; depends=[data_table lidR raster sp]; }; leafSTAR = derive2 { name="leafSTAR"; version="1.0"; sha256="16zfaj0v6dx6mhy6m126lxa6w0dzfw4acm83jlbrizaz52amhv6a"; depends=[]; }; - leafdown = derive2 { name="leafdown"; version="1.0.0"; sha256="1zvgbglrb4javazvyph7b48x3qab7kiziiya1a1wccdm9l6qh58w"; depends=[checkmate leaflet magrittr R6 shiny shinyjs]; }; - leafem = derive2 { name="leafem"; version="0.1.6"; sha256="0ml110rva6ca8ycy0mrivq3wsj0dvyi5f62i92948r7mk6kf0l6a"; depends=[base64enc geojsonsf htmltools htmlwidgets leaflet png raster sf]; }; + leafdown = derive2 { name="leafdown"; version="1.1.1"; sha256="0askyssljw1nlvvygdfn3sw3vqzax9w5k6441809z2j54199dfis"; depends=[checkmate leaflet magrittr R6 shiny shinyjs]; }; + leafem = derive2 { name="leafem"; version="0.2.0"; sha256="13dsgnq90n80y3fz5xgy8sm3jbgzv3zkxxy4y902j0gnxarpiswp"; depends=[base64enc geojsonsf htmltools htmlwidgets leaflet png raster sf]; }; leafgl = derive2 { name="leafgl"; version="0.1.1"; sha256="042jps6zh4xr0xj19a7fbgrcb6q6gsw2q5f191lyskr8iajdrz1h"; depends=[geojsonsf htmltools jsonify leaflet sf]; }; leaflegend = derive2 { name="leaflegend"; version="0.6.1"; sha256="1wby363xbl8kc47pn5057gl812kazyi892067928ikyxq81lxqgl"; depends=[base64enc htmltools htmlwidgets leaflet]; }; leaflet = derive2 { name="leaflet"; version="2.1.1"; sha256="0xsng9n08i1w7qj4hbi706m6d8jm9ixrnwq5xac2s3csfm1s1xij"; depends=[base64enc crosstalk htmltools htmlwidgets leaflet_providers magrittr markdown png raster RColorBrewer scales sp viridis]; }; leaflet_esri = derive2 { name="leaflet.esri"; version="1.0.0"; sha256="01bwzxh2rdhpvvazaxsji8axl765q1ix1fdxla6i61nvqkpw3dz1"; depends=[htmltools leaflet leaflet_extras]; }; leaflet_extras = derive2 { name="leaflet.extras"; version="1.0.0"; sha256="0li7651cwlz7sg04xdrmvhkrf0n6amaydck7gqz0wkb6wq8hcyzw"; depends=[htmltools htmlwidgets leaflet magrittr stringr]; }; - leaflet_extras2 = derive2 { name="leaflet.extras2"; version="1.1.0"; sha256="138d2ajma3fkz7nsh50z4gw5zaflas39gsy7k5l120hxr7nmzgfk"; depends=[htmltools leaflet magrittr]; }; + leaflet_extras2 = derive2 { name="leaflet.extras2"; version="1.2.0"; sha256="0l8bfia5cb3420icvij7yljdg04b9x783x2gnvy5360gmd0c9sqf"; depends=[htmltools leaflet magrittr]; }; leaflet_minicharts = derive2 { name="leaflet.minicharts"; version="0.6.2"; sha256="0pmgr9c3z5zdm13kb17ldjdl3i792mv20gbxzn1asfyf7csp7jxi"; depends=[htmltools leaflet]; }; leaflet_multiopacity = derive2 { name="leaflet.multiopacity"; version="0.1.1"; sha256="0ynbqjs4gdnjsygzwlczrirhazpq2gl9grzyxvnyl4jcpb3yg7y2"; depends=[htmltools htmlwidgets]; }; leaflet_opacity = derive2 { name="leaflet.opacity"; version="0.1.0"; sha256="19dkl105sf7c9wrpl8kzwsjwwc7r9qb4c1g85w2lavpj0pbyazxw"; depends=[htmltools htmlwidgets]; }; leaflet_providers = derive2 { name="leaflet.providers"; version="1.9.0"; sha256="0yynrwv4xd5cdh49cwvfxm4ranarah9iiry2cd3b4fiihdfcg3wy"; depends=[]; }; leafletCN = derive2 { name="leafletCN"; version="0.2.1"; sha256="1rg39n4bjacwss9nbdnz8y2zh8hxlc7a5ygndhjbmzajnbxfh09b"; depends=[htmltools jsonlite leaflet magrittr rgeos sp]; }; - leafletR = derive2 { name="leafletR"; version="0.4-0"; sha256="0j1i971dl3smq8rcsa5s4rfmmk936k2q6xa4hppfzwhrxs3xkkkx"; depends=[brew jsonlite]; }; leafpm = derive2 { name="leafpm"; version="0.1.0"; sha256="06d2k5x6bnv7bf4aw2bayi8sh5bw8z6akwnp7da5s7454hyqn0vv"; depends=[dplyr htmltools htmlwidgets jsonlite leaflet sf]; }; leafpop = derive2 { name="leafpop"; version="0.1.0"; sha256="1ccxglglfxbm9rlz1lx0jrp6h38w6gld3rld0cxdjjnvw636hm3f"; depends=[base64enc brew htmltools htmlwidgets sf svglite uuid]; }; leafsync = derive2 { name="leafsync"; version="0.1.0"; sha256="0p6pb7w5yz2wj33kdh7ixii9f6b8zv018psp6b7ifr7npgdxi3vx"; depends=[htmltools htmlwidgets leaflet]; }; @@ -11759,7 +11485,6 @@ in with self; { learnr = derive2 { name="learnr"; version="0.10.1"; sha256="08xwmms6x58y3dsfbl9c6d03145hb4ij97nqr1cc9dxxilmr6x31"; depends=[checkmate ellipsis evaluate htmltools htmlwidgets jsonlite knitr markdown rappdirs renv rmarkdown rprojroot shiny withr]; }; learnrbook = derive2 { name="learnrbook"; version="1.0.2"; sha256="13jd5j597pv3ainy6xx7ra402ymrh25hgfjzq0csq6d86n5fz3aj"; depends=[]; }; learnstats = derive2 { name="learnstats"; version="0.1.1"; sha256="1sa064cr7ykl4s1ssdfmb3v1sjrnkbwdh04hmwwd9b3x0llsi9vv"; depends=[ggplot2 Rcmdr shiny]; }; - leastcostpath = derive2 { name="leastcostpath"; version="1.8.0"; sha256="1106wh2yy048jimiyb3gwm9d00jfq4wk0dnj4a5sfk90rkg28acw"; depends=[gdistance Matrix pbapply raster rgdal rgeos sp]; }; ledger = derive2 { name="ledger"; version="2.0.9"; sha256="0ynr1g7vfkabl78zjnshyxixk45g28bi9h1p4zjfl83009yhqjwx"; depends=[dplyr rlang stringr tibble tidyr tidyselect]; }; leem = derive2 { name="leem"; version="0.1.0"; sha256="1sm9v3m95fbg3apvv3jjf47qxn8v6ipdsm1103dqk4zngmsz4xia"; depends=[tkrplot]; }; leerSIECyL = derive2 { name="leerSIECyL"; version="1.0.2"; sha256="1zx28gpnys9mmhq7wwljfnq92wj1h1vxgqiirnfmn36z942nvmxl"; depends=[RCurl]; }; @@ -11769,18 +11494,18 @@ in with self; { legislatoR = derive2 { name="legislatoR"; version="1.0"; sha256="1553hpb2cmv3hw6v4c7qwgg8n18jwx101yaqnmaaiv8gfyh6j43m"; depends=[curl dplyr]; }; legocolors = derive2 { name="legocolors"; version="0.3.1"; sha256="0ds9c2x0x590yk7mrjm4hh7k72p51slssg7jlprd71mw6hry91ma"; depends=[]; }; lehdr = derive2 { name="lehdr"; version="1.0.1"; sha256="0hg5a4w37wi6bqks2298ajsj8q6y3lvbx80wwg5364vnv7na3308"; depends=[dplyr glue httr rappdirs readr rlang stringr]; }; - leiden = derive2 { name="leiden"; version="0.3.9"; sha256="03gaxpcab3a1av5lk8r5ll1s858gvyx5ndknci1sia96w1v44xc1"; depends=[igraph Matrix reticulate]; }; - leidenAlg = derive2 { name="leidenAlg"; version="1.0.2"; sha256="04n2sfz2s6jvls9i6x5ka5nday2ah6j2npwksh1dqwjib8dsqnsf"; depends=[igraph Matrix Matrix_utils Rcpp RcppArmadillo RcppEigen sccore]; }; + leiden = derive2 { name="leiden"; version="0.4.2"; sha256="1gg24afwbz818041bhmswmdqgxv35zp5h1i1102p58aaiis8dkna"; depends=[igraph Matrix reticulate]; }; + leidenAlg = derive2 { name="leidenAlg"; version="1.0.3"; sha256="1lq2m87zm1j68b5a2qa77s8n54y0hyd1akzw816chl6k5vrhsviw"; depends=[igraph Matrix Matrix_utils Rcpp RcppArmadillo RcppEigen sccore]; }; leidenbase = derive2 { name="leidenbase"; version="0.1.11"; sha256="1ahjbpr6snxp5x4ik3lpspzgw7l7y9abpswsl0mkvx4jq5dw69rn"; depends=[igraph]; }; leiv = derive2 { name="leiv"; version="2.0-7"; sha256="15ay50886xx9k298npyksfpva8pck7fhqa40h9n3d7fzvqm5h1jp"; depends=[]; }; - lemna = derive2 { name="lemna"; version="0.9.2"; sha256="0pmhapdps9hxkixs3qiq6gipsm7r7f3xvz8iazzkia3lr02f653f"; depends=[deSolve ggplot2 gridExtra]; }; + lemna = derive2 { name="lemna"; version="1.0.0"; sha256="1dm6kcbjkh12c7aa0kmygwj5vv61gmpmh06j0jsg0h7ys8hrdhjq"; depends=[deSolve ggplot2 gridExtra]; }; lemon = derive2 { name="lemon"; version="0.4.5"; sha256="1y3ljidhqdakxlya2npj2w0az820g8kw6gl1cfm4f0cxvzgd1ly4"; depends=[ggplot2 gridExtra gtable knitr lattice plyr rlang scales]; }; lenses = derive2 { name="lenses"; version="0.0.3"; sha256="08akwzlc5gk2rxbh9xp67n5ahdcld60932ascczjv0accrkxizhk"; depends=[magrittr rlang tidyselect]; }; leontief = derive2 { name="leontief"; version="0.2"; sha256="1gy23047c6gci9m83yrb662d5685x1kky6m94w68swms59gdc6yp"; depends=[Rcpp RcppArmadillo]; }; leprechaun = derive2 { name="leprechaun"; version="1.0.0"; sha256="1y30s519502bqabzsf1njf3zzqlbmr4sbmsm57ci1r6dv4miijkh"; depends=[cli fs jsonlite roxygen2 usethis]; }; leri = derive2 { name="leri"; version="0.0.1"; sha256="1309v58xdw3p6y2wpnl64vgsds5kvfiary2a3fa041kz23jzbp3c"; depends=[ncdf4 raster]; }; lero_lero = derive2 { name="lero.lero"; version="0.2"; sha256="03ll7jzcay0swwpmxyf0y9k2h8mxx4p5v3ggm9dgdz4j99934l70"; depends=[]; }; - lessR = derive2 { name="lessR"; version="4.1.7"; sha256="14sfjfcxrr3x5fi5h2pacxs108zja5ywgb377fxgbrh2blygd6bs"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase shiny viridisLite]; }; + lessR = derive2 { name="lessR"; version="4.1.9"; sha256="0dvyzgiyhd6mvbqvw5bkm4vdmwk82rg3bkczpcjwb8a2n903jw08"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase shiny viridisLite]; }; lest = derive2 { name="lest"; version="1.1.0"; sha256="1d69kvdl31crv4ik8bwylq3s3f4skzrjc4x49c79w443g64n2jp9"; depends=[]; }; lestat = derive2 { name="lestat"; version="1.9"; sha256="1skxymdf3ncmdbskh7711xxgwsmwxfxnl52gcgw06jscx6s6wrsd"; depends=[MASS]; }; letsR = derive2 { name="letsR"; version="4.0"; sha256="07l1wgwnkqnvh47ssg62vj88vgml52n0934w00pjxdk90kk3c5zs"; depends=[fields geosphere maps maptools raster rgdal rgeos sp XML]; }; @@ -11789,18 +11514,17 @@ in with self; { lexicon = derive2 { name="lexicon"; version="1.2.1"; sha256="0x7rscsh6par2lj11sby7bmz41cxn63iiw51lgh29z09cg8j606c"; depends=[data_table syuzhet]; }; lexiconPT = derive2 { name="lexiconPT"; version="0.1.0"; sha256="0w53gnr29nzc1ib54rnxdycs0c5f7vpv586qmvxxzy4ar16kisaq"; depends=[]; }; lfactors = derive2 { name="lfactors"; version="1.0.4"; sha256="1r8qlwj3zsm233jfx9ag0q5g1knvjmbwl3785pwcd12zi6f68dcc"; depends=[]; }; + lfc = derive2 { name="lfc"; version="0.2.2"; sha256="01qf9jizfrr5nvn1b1arhmmbkrvba7krm0r04b7vrqc30m79iikx"; depends=[]; }; lfda = derive2 { name="lfda"; version="1.1.3"; sha256="0sk409jx4chs2wzhpfw7rlg9pwpdqg32ncfl3w243ypq73jq0qv3"; depends=[plyr rARPACK]; }; - lfe = derive2 { name="lfe"; version="2.8-7.1"; sha256="0l4clxsh1s8zram1ad8ixzzganz82s7r6na93qlzm11zqkcfz8fn"; depends=[Formula Matrix sandwich xtable]; }; + lfe = derive2 { name="lfe"; version="2.8-8"; sha256="0wdbhnyzzvpkjyjsxidkcwpssij3k476lhlfdkk2xwhnz8l2khhg"; depends=[Formula Matrix sandwich xtable]; }; lfl = derive2 { name="lfl"; version="2.1.2"; sha256="0qi84mmsxah6yjacf6q2grgd40nqkf75srcfwksacv90qz6bvm0x"; depends=[e1071 foreach forecast plyr Rcpp tseries zoo]; }; lfmm = derive2 { name="lfmm"; version="1.1"; sha256="1v2sb2qghwcln3b5rpzhakg562izlzyxzvz49nz74y0rh2gx7g9i"; depends=[foreach ggplot2 knitr MASS purrr Rcpp RcppEigen readr rmarkdown RSpectra]; }; - lfstat = derive2 { name="lfstat"; version="0.9.4"; sha256="0lm9fyw45kdkkjldkmagykn9p3l3jlw2ky3h00f7j6rqkizjm6r0"; depends=[dygraphs lattice latticeExtra lmom lmomRFA plyr xts zoo]; }; lg = derive2 { name="lg"; version="0.4.1"; sha256="1srlklq6hkb4yd3lbbazswj866i3wzk2524hhj1v45yr7d5qhxv0"; depends=[ggplot2 ks localgauss logspline mvtnorm np tseries]; }; lgarch = derive2 { name="lgarch"; version="0.6-2"; sha256="05xksc4d6dbf5ls4lf2gpk9xyi99fikr7dva88b84rfgads1yhrh"; depends=[zoo]; }; - lgcp = derive2 { name="lgcp"; version="1.7"; sha256="0i45n31wxznl6485zsa5nnfhy4f3lya9sijyavdcwx0v8j2gkpvr"; depends=[fields iterators maptools Matrix ncdf4 RandomFields raster rgeos rpanel sp spatstat spatstat_core spatstat_geom spatstat_utils]; }; lglasso = derive2 { name="lglasso"; version="0.1.0"; sha256="0qkmlr7gfbw9m403676p4ip4hn2v2ll1jcwj5vhshcyb5whsr866"; depends=[glasso]; }; lgpr = derive2 { name="lgpr"; version="1.1.5"; sha256="03wf6n3agls48r1a82aw6sywj3hzs0pza29l3p68nlqlkf9amnnw"; depends=[bayesplot BH ggplot2 gridExtra MASS Rcpp RcppEigen RcppParallel RCurl rstan rstantools StanHeaders]; }; lgr = derive2 { name="lgr"; version="0.4.3"; sha256="18s92qyakhvp336kk2777ydypwfrfwfz6a1gqkq812zy3kcb4mcc"; depends=[R6]; }; - lgrExtra = derive2 { name="lgrExtra"; version="0.0.5"; sha256="0h34rb8diavs7an45nng8xfs96x3h2kkl9xy7yzjg851m3f7pbiq"; depends=[data_table lgr]; }; + lgrExtra = derive2 { name="lgrExtra"; version="0.0.6"; sha256="16kycczwarql77gfsi0yaa5v906acmpgp7934wpfcjv8h6brg6b8"; depends=[data_table lgr]; }; lgrdata = derive2 { name="lgrdata"; version="0.1.1"; sha256="0h1crdhqfp6hzx30lp0w015scf2566hhrl2i7mkxy868rkl3aig9"; depends=[]; }; lgtdl = derive2 { name="lgtdl"; version="1.1.5"; sha256="1sixq56d2px36q0xq3kl0zwj2yzm3q8fhgqjvmajcdd5jl8l7130"; depends=[]; }; lhmixr = derive2 { name="lhmixr"; version="0.1.0"; sha256="1c4ydgq1z2y0xk8xqdsim6xvgxdbl3gglfk5kcr9k4m01arvv0rf"; depends=[]; }; @@ -11815,7 +11539,7 @@ in with self; { librarysnapshot = derive2 { name="librarysnapshot"; version="0.1.2"; sha256="0v4x564zpm58kxs5n84bi6mcjhbzjg6a2lc30vsc8kbm3qy0nq38"; depends=[]; }; libsoc = derive2 { name="libsoc"; version="0.7.3"; sha256="0baglknb67gmzr4cimlvz44f11np8glcdjdgs3jy8qlz0c8pm95p"; depends=[]; }; libstableR = derive2 { name="libstableR"; version="1.0.2"; sha256="1gkcgbc8a7ks9x8mqmlz98hk55q3qy62izam7csz1s0r5dzsyqcr"; depends=[Rcpp RcppGSL]; }; - lidR = derive2 { name="lidR"; version="4.0.0"; sha256="1vmkmcgp509g6fcn8dphs8qv9hf9n6f5cx23n8h8d38mzf71x9vi"; depends=[BH classInt data_table glue lazyeval raster Rcpp RcppArmadillo rgl rlas sf sp stars terra]; }; + lidR = derive2 { name="lidR"; version="4.0.1"; sha256="0bfnnshnc3wcz8zghr71srfdhd32wmmwadg5qw85ydvz7bpsgv8i"; depends=[BH classInt data_table glue lazyeval raster Rcpp RcppArmadillo rgl rlas sf sp stars terra]; }; lidaRtRee = derive2 { name="lidaRtRee"; version="3.1.2"; sha256="09gbiy18jd08h7fvshv36zil51hjmiib2sqcpv1vnrnmfly2fyrs"; depends=[car gvlma imager leaps lidR raster reldist sp]; }; lifecontingencies = derive2 { name="lifecontingencies"; version="1.3.8"; sha256="0q9lvckd98w87xl0045b0n76yy1q0yxacwrmh3xgp1xnzxv95wph"; depends=[markovchain Rcpp]; }; lifecourse = derive2 { name="lifecourse"; version="2.0"; sha256="1m8ihqvzhzpq2m2pdvh37bpq9pdbj23r3y0jkl3q8farh3qj473d"; depends=[TraMineR]; }; @@ -11827,9 +11551,9 @@ in with self; { lifx = derive2 { name="lifx"; version="0.2.0"; sha256="0p9ljd3s3lc1rkhzpp801izy9y52f0yc1dsrsxwx5gi89cnib596"; depends=[assertthat crayon curl httr jsonlite]; }; liger = derive2 { name="liger"; version="2.0.1"; sha256="121ipwznm40x2xhhlxd20385va4nmvgni5dg24lbhyfn5sb3dsy1"; depends=[matrixStats Rcpp RcppArmadillo]; }; lightgbm = derive2 { name="lightgbm"; version="3.3.2"; sha256="12hbvm1va6sb5yny564jvhhzrkcq4j33rcdhqhwxaac2m08cpi8s"; depends=[data_table jsonlite Matrix R6]; }; - lightr = derive2 { name="lightr"; version="1.6.2"; sha256="1dq4gj4yxqxaqip2vy3jynxrsllqlcjlg9v83m0ilrf6nhnigm2i"; depends=[future_apply progressr xml2]; }; + lightr = derive2 { name="lightr"; version="1.7.0"; sha256="0jqkd5nwnlbifl65i08fflla522y5vp8s39sqx9kl2pidn6z9rp6"; depends=[future_apply progressr xml2]; }; lightsout = derive2 { name="lightsout"; version="0.3"; sha256="0ypniqf9wk35dd9j57wd7gxchr5hy25fwhmkndz2z8b9ajhm3c9b"; depends=[magrittr shiny shinyjs]; }; - likelihood = derive2 { name="likelihood"; version="1.7"; sha256="0q8lvwzlniijyzsznb3ys4mv1cqy7ibj9nc3wgyb4rf8676k4f8v"; depends=[nlme]; }; + likelihood = derive2 { name="likelihood"; version="1.8"; sha256="18vz0bhz01avzmxgf10pr26aaim1jr68a6y080l9yfizk8bmm6ml"; depends=[nlme]; }; likelihoodAsy = derive2 { name="likelihoodAsy"; version="0.51"; sha256="0qxwdf6npyj926zd2pbfscgz1z01hwgm6099h882d2l1sim2j9g7"; depends=[alabama cond digest nleqslv pracma Rsolnp]; }; likelihoodExplore = derive2 { name="likelihoodExplore"; version="0.1.0"; sha256="13cnql7pbx8qq1j3cfb3lkzzf2k55shpfa0jd00z30ys6imxzcfn"; depends=[lazyeval plyr]; }; likelihoodR = derive2 { name="likelihoodR"; version="1.0.7"; sha256="1bcrfx3v9xjyb2q44x26wf4d7p0f8nbcp1xhimk7y9rg05s7cxc9"; depends=[]; }; @@ -11844,18 +11568,18 @@ in with self; { limorhyde2 = derive2 { name="limorhyde2"; version="0.0.7"; sha256="06w3yf391gzaz0rssbl8jp3n9jmywwkmaxbf8mqxds5zy94f4bry"; depends=[abind ashr checkmate data_table DESeq2 foreach HDInterval iterators limma mashr pbs zeallot]; }; lin_eval = derive2 { name="lin.eval"; version="0.1.2"; sha256="05saxzzwh3gs6a4ii63n5kjm06p399xkyrjnqvn9f164322p7pwb"; depends=[broom]; }; linERR = derive2 { name="linERR"; version="1.0"; sha256="1mhiyqfpwagg161ncp5ndd22hlh12qzr360nms13rgyd8a077cq7"; depends=[survival]; }; - linLIR = derive2 { name="linLIR"; version="1.1"; sha256="1v5bwki5j567x2kndfd5nli5i093a33in31025h9hsvkbal1dxgp"; depends=[]; }; linbin = derive2 { name="linbin"; version="0.1.3"; sha256="04x97ah45qljpa4kg1iqz85w0q7936n4sq7vbzk2mx5m87p83czh"; depends=[]; }; linconGaussR = derive2 { name="linconGaussR"; version="0.1"; sha256="10l7qajqa8f8yq3zbjmjxf0va2krq1rab42ihfhz2jyv3mn24xsi"; depends=[MASS Rcpp RcppArmadillo]; }; lindia = derive2 { name="lindia"; version="0.9"; sha256="1qma8wr0fkwx03x971crkh8cfc8z4374py1r1wvszj9wzi4vfp5r"; depends=[ggplot2 gridExtra MASS]; }; - linear_tools = derive2 { name="linear.tools"; version="1.3.0"; sha256="14lp3gifzbid82lkr7rdqajz2abp8m7y8irpwx6s8w66djjfckda"; depends=[ggplot2 magrittr plyr pryr scales stringr]; }; + linea = derive2 { name="linea"; version="0.0.1"; sha256="010npci7iv7i8634h68ysqw0s2zzna9hq23z03614mr2nsw05hgd"; depends=[anytime dplyr gtrendsR lubridate magrittr openxlsx plotly purrr RColorBrewer readr readxl reshape2 rlist sjmisc stringr tibble tidyr tidyverse tis zoo]; }; linearModel = derive2 { name="linearModel"; version="1.0.2"; sha256="032liplyjw7n0ylvpqv038pf8sbfbcz58zka5rr76cvh2xzf87vg"; depends=[]; }; linearQ = derive2 { name="linearQ"; version="2.0"; sha256="0sx7bx0x1k193day5w1dbmc09kn5741pcilxijjn2y5aijhd5wk9"; depends=[Rcpp stepR]; }; lineartestr = derive2 { name="lineartestr"; version="1.0.0"; sha256="0bzsywk97j2mmsi7pj9267za1q2601crynh9kszwj6xjbg08nvsm"; depends=[dplyr forecast ggplot2 Matrix readr sandwich tidyr viridis]; }; + linelist = derive2 { name="linelist"; version="0.0.1"; sha256="182dsc5sm4ac0wpbcs29sfdvjqz0mpfk34j2qapbi5cn194x7rj9"; depends=[checkmate]; }; linemap = derive2 { name="linemap"; version="0.2.0"; sha256="04nb0hmmikksp7ak4vdam9r2dpv7w3r5wkxxbjr7yk9pfq5gjncp"; depends=[sf]; }; lineup = derive2 { name="lineup"; version="0.40"; sha256="01m50q9qdryav94rmspm4dk17m7kfcxb0p502cbxmnajklz3ajgg"; depends=[class qtl]; }; lineup2 = derive2 { name="lineup2"; version="0.6"; sha256="0qkxwn30g0bjm9aq9a59pb3xq844qr43ribnk607zlf8lwbibsk2"; depends=[Rcpp]; }; - lingglosses = derive2 { name="lingglosses"; version="0.0.2"; sha256="006i9a44gqhcf0lqnxjvnjsj4k751lxc4cqi90jkc5bcphanpczp"; depends=[kableExtra knitr rmarkdown]; }; + lingglosses = derive2 { name="lingglosses"; version="0.0.3"; sha256="0g8l4jyahx6awg3gs6xyd1947bwqxbr6rn04im9ij8f8sxqzj21r"; depends=[kableExtra knitr rmarkdown]; }; lingmatch = derive2 { name="lingmatch"; version="1.0.3"; sha256="0802dkvy5mbnc8gbpws3znvy91zv3glwpfpyn6yypaj8zdijbjji"; depends=[Matrix Rcpp RcppParallel]; }; lingtypology = derive2 { name="lingtypology"; version="1.1.8"; sha256="184mb7f7lgzvc7ynx6zdfgccx7q0il5d3s4pcq1l58rbnv7bi17w"; depends=[jsonlite leaflet leaflet_minicharts stringdist]; }; linguisticsdown = derive2 { name="linguisticsdown"; version="1.2.0"; sha256="1y2g8h0p4q4mjrawzyprsdw8ynqcbpnjypyhdaf03pcwqglcirkl"; depends=[DT knitr magrittr miniUI rstudioapi shiny stringr]; }; @@ -11874,34 +11598,35 @@ in with self; { liqueueR = derive2 { name="liqueueR"; version="0.0.1"; sha256="0rpjib0dz39la63gy9bw9gmdfq2fcx40y4y4wcb6ky41qcjdp1nd"; depends=[itertools]; }; lira = derive2 { name="lira"; version="2.0.1"; sha256="10bjmapnlw5z5cnbdpkwisvjkmk7zi9xqrvgmb5psj317zcxfc2p"; depends=[coda rjags]; }; lisa = derive2 { name="lisa"; version="0.1.2"; sha256="05hijs66jfyr68yvmm1dn262p1k6y4q7f2zvqkfagcb483rhwi53"; depends=[tibble]; }; - lisrelToR = derive2 { name="lisrelToR"; version="0.1.4"; sha256="0zicq0z3hhixan1p1apybnf3v5s6v6ysll4pcz8ivygwr2swv3p5"; depends=[]; }; - list = derive2 { name="list"; version="9.2"; sha256="1gn0g4qq9rr6vwnwq6525hx7iy3q3vmy3g2v3ba69v4jcdc0a0mx"; depends=[arm coda corpcor gamlss_dist magic MASS mvtnorm quadprog sandwich VGAM]; }; + lisrelToR = derive2 { name="lisrelToR"; version="0.1.5"; sha256="0i51v0x87277ly0kggdd594w6q4zq62b4n7xs9r25j08bzs82nfk"; depends=[]; }; + list = derive2 { name="list"; version="9.2.1"; sha256="1x3bmsylrqbkxp9h7b3g6cpwsxvz6ybq3dc7vhx0rsw3l6m6k0wz"; depends=[arm coda corpcor gamlss_dist magic MASS mvtnorm quadprog sandwich VGAM]; }; listArray = derive2 { name="listArray"; version="0.1.1"; sha256="0j8hdsda7p6m1q06mi32yh3wqsdjr77kb8js42nm63dgpfy7mvv5"; depends=[]; }; listWithDefaults = derive2 { name="listWithDefaults"; version="1.2.0"; sha256="1rv9jq9zlr5dm08mimba6ni2p5vkfybrgrqk1alm7y6mqpx56byp"; depends=[assertthat]; }; listarrays = derive2 { name="listarrays"; version="0.3.1"; sha256="0nfpqywq9pl9yj566y0jw0h89g0ppsc614538ns1jc3l5r2myils"; depends=[]; }; listcomp = derive2 { name="listcomp"; version="0.4.1"; sha256="0h3wmlm3y3vr21x4ik785ring57z5cjhlwvsljh06m5m3fkv8nxr"; depends=[rlang]; }; listcompr = derive2 { name="listcompr"; version="0.4.0"; sha256="1pmk56wz6yl1qixfk9ci1p96z7qwz65xyb6k5k46l5nbwal6ik4a"; depends=[]; }; listdown = derive2 { name="listdown"; version="0.4.1"; sha256="1i7vx71nc3vig73kxwaccdgjr91pa3sbl886qppqz4i3ns3z5vgr"; depends=[crayon yaml]; }; - listdtr = derive2 { name="listdtr"; version="1.1"; sha256="13p27cx2w3qb1rcizrva2ib7x7sm310gasi7n5pvvd8rkpwaypzq"; depends=[ggplot2]; }; listenv = derive2 { name="listenv"; version="0.8.0"; sha256="0ps8bk7zlhbviawrw7vw25skjq81hkk3ijyi6g74dmfqy8zsyapx"; depends=[]; }; + listr = derive2 { name="listr"; version="0.0.2"; sha256="0w7pmb9k550yrvcbml1zzng1agz19j9a6la1lvwqix3zcv5g5c32"; depends=[rlang tidyselect]; }; listviewer = derive2 { name="listviewer"; version="3.0.0"; sha256="0zirxdj58h43062f68h6nqcgmpnvdglxx3kjbs4i4k0z9wvqhx8r"; depends=[htmltools htmlwidgets shiny]; }; litRiddle = derive2 { name="litRiddle"; version="0.4.1"; sha256="1km6088pzf3s7ccbs87m4x7g9ypmvyp3l126wpg1yvxsj3gdaalg"; depends=[dplyr ggplot2]; }; + lite = derive2 { name="lite"; version="1.0.0"; sha256="15zvqz2n2h6fw4ckypm9q9qcricxhrgmd00l70dqv0jvw1bwgyf2"; depends=[chandwich exdex revdbayes sandwich]; }; liteq = derive2 { name="liteq"; version="1.1.0"; sha256="0w3w9f6374qwvlrqknavqh9b38n5q1r6aw5zmz5lahvadalwdbwi"; depends=[assertthat DBI rappdirs RSQLite]; }; litteR = derive2 { name="litteR"; version="0.9.1"; sha256="14giq4lp3g1srkj8y94y8sih11ix32fnh6nwaz3xvrx7jm2ic580"; depends=[dplyr fs ggplot2 purrr readr rlang rmarkdown stringr tidyr tidyselect yaml]; }; littler = derive2 { name="littler"; version="0.3.15"; sha256="149g3v5yvxfg7rv4iw8vk4lfialddvcf6y3mngyk9d2d75chzs49"; depends=[]; }; liureg = derive2 { name="liureg"; version="1.1.2"; sha256="1zhc5fs47whjvvwwiivykxfchzbjbldyvdmqh9rp7ccwba2q3956"; depends=[]; }; live = derive2 { name="live"; version="1.5.13"; sha256="1s6yrbwlc4wqszl2yvy1x6d93my18ba8sm8pwfy547cd1x055vig"; depends=[breakDown data_table dplyr e1071 forestmodel ggplot2 gower MASS mlr shiny]; }; livechatR = derive2 { name="livechatR"; version="0.1.0"; sha256="1k0z6q3s9iw962m1lwlx45p95flzl5jg1xh6ng426v9jh1yyrbb2"; depends=[data_table dplyr jsonlite magrittr purrr]; }; - liver = derive2 { name="liver"; version="1.11"; sha256="1lrs33qvgg6flapazjx9x2han0x0n45zchdi63xvsbafi6cg3a93"; depends=[class ggplot2]; }; + liver = derive2 { name="liver"; version="1.12"; sha256="0j5h5axgf3qkmfnm10gdzc4n6r8wj3d1f5zx3x183rzsiixvczmk"; depends=[class ggplot2]; }; ljr = derive2 { name="ljr"; version="1.4-0"; sha256="0jby94ml8w6pwnxbmv6qfjww2myvvnn9vrmlqpdh71dhgp3z35py"; depends=[]; }; llama = derive2 { name="llama"; version="0.10.1"; sha256="1rw4lbz172hwb24r424qq86bw7m3xxl66k474wx1scpcrsix2nzw"; depends=[BBmisc checkmate data_table ggplot2 mlr parallelMap plyr rJava]; }; llbayesireg = derive2 { name="llbayesireg"; version="1.0.0"; sha256="0jhkmrjkqfm1flwsbpv6060j6g7cj4ngm0drvrlvsiqpni0k96mh"; depends=[coda ggplot2 llogistic MASS MCMCpack Rcpp rstan StanHeaders]; }; lle = derive2 { name="lle"; version="1.1"; sha256="09wq7mzw48czp5k0b4ij399cflc1jz876fqv0mfvlrydc9igmjhk"; depends=[MASS scatterplot3d snowfall]; }; lllcrc = derive2 { name="lllcrc"; version="1.2"; sha256="06n1fcd3g3z5rl2cyx8jhyscq9fb52mmh0cxg81cnbmai3sliccb"; depends=[combinat data_table plyr VGAM]; }; llogistic = derive2 { name="llogistic"; version="1.0.3"; sha256="0wfszgcdi0i3lsm7gsih6a411v353c2gpbg3f06n6c2n35939lsl"; depends=[]; }; - lm_beta = derive2 { name="lm.beta"; version="1.5-1"; sha256="0p224y9pm72brbcq8y1agkcwc82j7clsnszqzl1qsc0gw0bx9id3"; depends=[]; }; + lm_beta = derive2 { name="lm.beta"; version="1.6-2"; sha256="01ys268xx1bhirr6axbc3l6jqnks7d9y1wyqy66bf0fgyz6z4ppb"; depends=[]; }; lm_br = derive2 { name="lm.br"; version="2.9.4"; sha256="1ia96snhmafajdzxmpq2dbl7lmnmnxi1jx808z4mhrzx2mi41fh7"; depends=[Rcpp]; }; - lmDiallel = derive2 { name="lmDiallel"; version="0.9.4"; sha256="11v3s9s0xdvmhm0insfpc5i7q1mvgb1zz0r7a97p3sbr8ylw251c"; depends=[multcomp plyr sommer]; }; + lmDiallel = derive2 { name="lmDiallel"; version="0.9.5"; sha256="1hgd4j5f23b4am8d8ljnvks9jzcy0z592np0j2kfjpiwca1zl31w"; depends=[multcomp plyr sommer]; }; lmForc = derive2 { name="lmForc"; version="0.1.0"; sha256="0v1r7yv0i3sc6cii78d9f9d3a6rvpvwrs6k3byi825r497xjgw3j"; depends=[]; }; lmPerm = derive2 { name="lmPerm"; version="2.1.0"; sha256="1ss2hcfxqvfq4n6hypv7jp0n0apby9payxzaswaysr5368lkidn3"; depends=[]; }; lmQCM = derive2 { name="lmQCM"; version="0.2.3"; sha256="0zld7gyng9kk3np62j8xfg951gvgsq2r8x3zmjfr2ykalw36kx5d"; depends=[Biobase genefilter progress]; }; @@ -11912,11 +11637,12 @@ in with self; { lmeInfo = derive2 { name="lmeInfo"; version="0.1.3"; sha256="1y75dv90jj8jzz4z4iixbv7ipbdx9f7wrjbjj46a8wjiidj1l5zw"; depends=[nlme]; }; lmeNB = derive2 { name="lmeNB"; version="1.3"; sha256="03khn9wgjbz34sx0p5b9wd3mhbknw8qyvyd5pvllmjipnir63d3q"; depends=[lmeNBBayes numDeriv statmod]; }; lmeNBBayes = derive2 { name="lmeNBBayes"; version="1.3.1"; sha256="13shfsh9x6151xy8gicb25sind90imrwclnmfj96b76p5dvhzabm"; depends=[]; }; - lmeSplines = derive2 { name="lmeSplines"; version="1.1-10"; sha256="0fy6hspk7rqqkzv0czvvs8r4ishvs7zsf4ykvia65nj26w7yhyia"; depends=[nlme]; }; + lmeSplines = derive2 { name="lmeSplines"; version="1.1-12"; sha256="140l95c6yys2rdpyh7clqx4x4qfd4w36hpz6jkb2ygbh90ikzi2r"; depends=[nlme]; }; lmec = derive2 { name="lmec"; version="1.0"; sha256="09shj01h2dl5lh7ch0wayr7qyhlmk0prv3p1vfgy91sn0wpbqlxr"; depends=[mvtnorm]; }; lmerTest = derive2 { name="lmerTest"; version="3.1-3"; sha256="1zd8gqjkazhxgpnnr484xwsq30p62fq8592nzyc171zjyplpbaim"; depends=[ggplot2 lme4 MASS numDeriv]; }; - lmeresampler = derive2 { name="lmeresampler"; version="0.2.1"; sha256="052b249zz9p79197qaaig9ynn5jph8kr945l4kk2vkj8h1j60sy8"; depends=[dplyr forcats ggdist ggplot2 HLMdiag magrittr Matrix nlmeU purrr statmod tidyr]; }; + lmeresampler = derive2 { name="lmeresampler"; version="0.2.2"; sha256="06vwcg8qw937v0r6bgkv6pwx35ppjavlzpl6wj7ccpwi0ay9c218"; depends=[dplyr forcats ggdist ggplot2 HLMdiag magrittr Matrix nlmeU purrr statmod tibble tidyr]; }; lmf = derive2 { name="lmf"; version="1.2"; sha256="1xqlqmjl7wf5b2s2a1k1ara21v74b3wvwl4mhbj9dkdb0jcrgfva"; depends=[]; }; + lmfor = derive2 { name="lmfor"; version="1.6"; sha256="0zhahfzphyywdnwkj8c94pxm86v296bvvszzcxp37xi4gayaknm6"; depends=[magic MASS Matrix nlme spatstat spatstat_geom]; }; lmls = derive2 { name="lmls"; version="0.1.0"; sha256="0gv7mawdpcqvvf3f61aa1l0yi32z9bs41i36ggn1nwga837g33k3"; depends=[generics]; }; lmm = derive2 { name="lmm"; version="1.3"; sha256="13b5rvdbzljir1fn4zxv2lshbga64vwzn6884izif9v5dkd5b29j"; depends=[]; }; lmmot = derive2 { name="lmmot"; version="0.1.4"; sha256="1a8msh9yvvd7cv1zxlxdv8arlfvxqghxzcxls23v6ifl5jf4d1p3"; depends=[MASS maxLik]; }; @@ -11938,7 +11664,7 @@ in with self; { loadings = derive2 { name="loadings"; version="0.1.1"; sha256="0nickkdjkfsjy8k52243181fdd1jvj3rgpzkcfjsmacbjcdl169g"; depends=[]; }; loadr = derive2 { name="loadr"; version="0.1.3"; sha256="01nsjsv7c8grsizfisczqwjrz5saff0pgn7716ig4i8nzargvz7a"; depends=[]; }; lobstr = derive2 { name="lobstr"; version="1.1.1"; sha256="0vkif17825x33cz8r89j0qph4wj5l8fzfgl8nh2g7m2v140cxjdq"; depends=[crayon Rcpp rlang]; }; - locStra = derive2 { name="locStra"; version="1.8"; sha256="1013xilzp6ly88nr26jzmcyvxadccv72m4s6pc9z5qv2baykbisw"; depends=[Matrix Rcpp RcppEigen Rdpack RSpectra]; }; + locStra = derive2 { name="locStra"; version="1.9"; sha256="0vblsxdlngpa0mzyay9w23nx85riq0dwjc04z20vyha0vdsnkfk6"; depends=[bigsnpr Matrix Rcpp RcppEigen Rdpack RSpectra]; }; localFDA = derive2 { name="localFDA"; version="1.0.0"; sha256="099hqnd0q4ylg03qi7icc6a9w1x7p76vlv5wxk8f53l7y9pp27b3"; depends=[]; }; localICE = derive2 { name="localICE"; version="0.1.1"; sha256="1pyq6kdahsy9qa0jzmring48r0i9h4rkp8lxpf9afksgm1qn0c5z"; depends=[checkmate ggplot2]; }; localIV = derive2 { name="localIV"; version="0.3.1"; sha256="1z3q5hk6qfc1pzqdrxwm8y3am27648lfz66lm84bf8abifw4kk60"; depends=[KernSmooth mgcv rlang sampleSelection]; }; @@ -11950,7 +11676,7 @@ in with self; { locationgamer = derive2 { name="locationgamer"; version="0.1.0"; sha256="0y99m003s177x57m4ynxd8jd2xzl5zb4bj7jnbc04h22ffdl6m6f"; depends=[]; }; locfdr = derive2 { name="locfdr"; version="1.1-8"; sha256="1falkbp2xz07am8jlhwlvyqvxnli4nwl188kd0g58vdfjcjy3mj2"; depends=[]; }; locfit = derive2 { name="locfit"; version="1.5-9.5"; sha256="08yywswywmvyys8380576n43h3xyiviq1p2392zcivlbknnjp7zx"; depends=[lattice]; }; - locits = derive2 { name="locits"; version="1.7.3"; sha256="0sjnwqiqwzdkglvbdxbkg17gjp0vyqvywsy0qq7adxj5hh0yah05"; depends=[igraph wavethresh]; }; + locits = derive2 { name="locits"; version="1.7.5"; sha256="0il7wf3373kcziy6bia3w57mm7i5wcqbzarzr1v9d8r5zw7h96p1"; depends=[igraph wavethresh]; }; locpol = derive2 { name="locpol"; version="0.7-0"; sha256="1p915n0l09kbwkly627074jslxl01yssp1rf0c7sygvsw6sgy5lm"; depends=[]; }; locpolExpectile = derive2 { name="locpolExpectile"; version="0.1.1"; sha256="1phwcnbk1vmdk3qmfx2nd6crplly2lb8gb57yl67ky3c4sryh358"; depends=[expectreg lestat locpol matrixcalc quantreg]; }; lodGWAS = derive2 { name="lodGWAS"; version="1.0-7"; sha256="0g5b44d3wb5hnx5l2n76myb1pc9ml3a052n1a4gvgqapa5as35s2"; depends=[rms survival]; }; @@ -11974,7 +11700,7 @@ in with self; { loggit = derive2 { name="loggit"; version="2.1.1"; sha256="1fkr2fnfazxhm3pq0gysxhz6aqsdx38d017y0xbmlsg9hfgfx6q1"; depends=[]; }; logiBin = derive2 { name="logiBin"; version="0.3"; sha256="06y5bqm3j6xdr1cd607v2sqkghnd2bv6bvxc6cz8dvp8jabqa0zm"; depends=[data_table doParallel foreach iterators partykit]; }; logib = derive2 { name="logib"; version="0.1.2"; sha256="09c528wrgyk0cg1flx2fsl53q4v9442rr44g9kh5jznqs788608b"; depends=[lubridate readxl]; }; - logicDT = derive2 { name="logicDT"; version="1.0.1"; sha256="0gdzrbjq2pyfhsm8840q8dvrcfj3kvzkc8grgvpv05j11fpzwyq3"; depends=[]; }; + logicDT = derive2 { name="logicDT"; version="1.0.2"; sha256="082cqqdlr43z8a9v2g3gb03xz13p2dy99vqrkpnvwa1shy093b96"; depends=[]; }; logihist = derive2 { name="logihist"; version="1.0"; sha256="1q3322rh3g31c5i80aw54pln0m1jgxmbx30cn31nlh3ijkvnpq9a"; depends=[ggplot2]; }; logistf = derive2 { name="logistf"; version="1.24.1"; sha256="0qd64sz8cj7s200fq00phjw6bfy8y7ys1bv3lcdj5wzp9h2xkq77"; depends=[formula_tools mgcv mice]; }; logistic4p = derive2 { name="logistic4p"; version="1.5"; sha256="0h0dxyklqc95ykyril1a3d2bdnszj5l9dqbxzh2wbfmk06prvh8b"; depends=[MASS]; }; @@ -11986,8 +11712,8 @@ in with self; { loglognorm = derive2 { name="loglognorm"; version="1.0.1"; sha256="0rhx769a5nmidpbpngs2vglsbkpgw9badz3kj3jfmpj873jfnbln"; depends=[]; }; logmult = derive2 { name="logmult"; version="0.7.4"; sha256="1k9izgna3bfi8gvnpks85gj3zv3lp35991ml58q7pcqqr78giii2"; depends=[gnm qvcalc]; }; lognorm = derive2 { name="lognorm"; version="0.1.10"; sha256="021g3g7hyxcrj2lzqfjxj2ypcn8c6qminr0l6sdydynvjdjjv0pc"; depends=[Matrix]; }; - logr = derive2 { name="logr"; version="1.2.9"; sha256="0kji2dp2bnfff4x4lq1gz57k4zsjc4i56slb8kxiiipchmv6drrj"; depends=[this_path withr]; }; - logspline = derive2 { name="logspline"; version="2.1.16"; sha256="12hkdi77vkic05p2vhap025xdcg1n53ywm239v18713pihdlj63l"; depends=[]; }; + logr = derive2 { name="logr"; version="1.3.0"; sha256="18dhnrl6plkv46lc4y4zc30yv4gyssl0nlg24raqsdwrbk2bh2b8"; depends=[this_path withr]; }; + logspline = derive2 { name="logspline"; version="2.1.17"; sha256="05c8l22zcvb086909h9vw7icphww703vkcxp2h881y4n1232pdq3"; depends=[]; }; lokern = derive2 { name="lokern"; version="1.1-9"; sha256="1fms79bb4y6ryzmxhpc544zh52xgd879gpcigc24bjhd7whl9nry"; depends=[sfsmisc]; }; lolR = derive2 { name="lolR"; version="2.1"; sha256="0lrmn9lzyyfr1y0i7qp6xfpdxyisbkajwg0jkrqkiw687psnh2rc"; depends=[abind ggplot2 irlba MASS pls robust robustbase]; }; lolog = derive2 { name="lolog"; version="1.3"; sha256="0lfb3d7rxssvzd70gixpmr8r8hcmxplg5yy181hdrvjsdc8w8jn4"; depends=[BH ggplot2 intergraph Matrix network Rcpp reshape2]; }; @@ -11995,7 +11721,6 @@ in with self; { longCatEDA = derive2 { name="longCatEDA"; version="0.31"; sha256="0dji41lsknfwmgb2fczzm37dm97wvi45rh878w7pwlzwdh9vq8va"; depends=[]; }; longROC = derive2 { name="longROC"; version="1.0"; sha256="1fs11vqi4hy99d7shzzdvd6ic5gay6rh2027w6j0qpd04n8q88m8"; depends=[survival]; }; longRPart2 = derive2 { name="longRPart2"; version="0.2.3"; sha256="1vqcsxi6c4hqrpk3ns7yhghfryin1psxl38qkz2xz8cvyn58f685"; depends=[formula_tools ggplot2 MASS nlme rpart]; }; - longclust = derive2 { name="longclust"; version="1.2.3"; sha256="1g45d5pak2vhbjrcmxxrk9jyrdxkqwy45phzpsw6b2bjyrgr4i7g"; depends=[]; }; longit = derive2 { name="longit"; version="0.1.0"; sha256="08d7pfwd2anx6cdgpyzrn5na3s75z6plbxb11774zcxyzg81rz69"; depends=[AICcmodavg missForest R2jags rjags]; }; longitudinal = derive2 { name="longitudinal"; version="1.1.13"; sha256="046w3xbr535c5jyd68adv42a7limxp1mv57b5w6w673w707lmw2p"; depends=[corpcor]; }; longitudinalData = derive2 { name="longitudinalData"; version="2.4.1"; sha256="0lnvcfgj721bawl1ciz0jw83mfsnzkhg6jn824vr3qdm4rbib2vd"; depends=[class clv misc3d rgl]; }; @@ -12013,25 +11738,25 @@ in with self; { loon_ggplot = derive2 { name="loon.ggplot"; version="1.3.1"; sha256="19g90mfin902d5ywi5ivkhga0jwm7l7lswfs08slq3fmn1ibzpsv"; depends=[ggmulti ggplot2 gridExtra loon patchwork rlang scales]; }; loon_shiny = derive2 { name="loon.shiny"; version="1.0.2"; sha256="00h10jlwxbanwp9mwfjy66nx49d5258qb3m2s9asvkky6g2sghax"; depends=[base64enc colourpicker gridExtra loon loon_ggplot shiny]; }; loon_tourr = derive2 { name="loon.tourr"; version="0.1.3"; sha256="1vdxqdsr89gzvsw9gx001rw416586lqyq0rp3g55n1lh6h9cy19d"; depends=[loon loon_ggplot MASS tibble tourr]; }; - loop = derive2 { name="loop"; version="1.1"; sha256="1gr257fm92rfh1sdhsb4hy0fzwjkwvwm3v85302gzn02f86qr5dm"; depends=[MASS]; }; lordif = derive2 { name="lordif"; version="0.3-3"; sha256="1yby9fvzdi1dzvzp6d6h144k1p9nfacd8l5bd66dmhnc8sp2nlx5"; depends=[mirt rms]; }; lorec = derive2 { name="lorec"; version="0.6.1"; sha256="0mgypd8awixh1lzbh5559br4k7vi3pfmwniqhgh68wc06sc6bn65"; depends=[]; }; lorentz = derive2 { name="lorentz"; version="1.0-5"; sha256="1py2s4x6vnlyyf5fnwbhws00dmf5qyzmx8wza337w3nzxkr6ns6b"; depends=[emulator magic magrittr tensor]; }; lorenz = derive2 { name="lorenz"; version="0.1.0"; sha256="1zclxjr1ya4rc48hm8a1s6ayr4yvjydgwwsi4fwg3qqf4mspa2dl"; depends=[dineq magrittr]; }; lori = derive2 { name="lori"; version="2.2.2"; sha256="1153ilp1i849rwbbms4vfc6c1mxgpav04zfqm2sdj7s63nvknx6r"; depends=[data_table rARPACK svd]; }; - lotri = derive2 { name="lotri"; version="0.3.1"; sha256="042jbvpaawmfklak56gnmwyp43q9scm539crlv38j8aafik1g2s5"; depends=[]; }; + lotri = derive2 { name="lotri"; version="0.4.1"; sha256="01jqkhshybhvp33n3p0ikgr5am8zabg0l5kinqr7y51qh9ab6vd4"; depends=[crayon]; }; lowmemtkmeans = derive2 { name="lowmemtkmeans"; version="0.1.2"; sha256="08zhdw48rzw47yzhg4s37bkliyngxs46cyb57dvng1s3m0w0dhvi"; depends=[Rcpp RcppArmadillo]; }; - lowpassFilter = derive2 { name="lowpassFilter"; version="1.0-1"; sha256="02an3845dsxym2r8xb4xlg699vha28gw2jgy1hhmxs0mgklj6w2a"; depends=[Rcpp]; }; + lowpassFilter = derive2 { name="lowpassFilter"; version="1.0-2"; sha256="1ic4xissqm7cq951yw7cf74a520mnm34yr6mlw1byhn5w4nzbk2x"; depends=[Rcpp]; }; lpSolve = derive2 { name="lpSolve"; version="5.6.15"; sha256="1fpkyjyqykwa1dxnhiky01pm09syxg169lm7hpy39bdbg10vw9s6"; depends=[]; }; lpSolveAPI = derive2 { name="lpSolveAPI"; version="5.5.2.0-17.7"; sha256="1fsmipb97gglihrf424mz063fn67bf55jjahnbh53svkmm2qxg4y"; depends=[]; }; lpbrim = derive2 { name="lpbrim"; version="1.0.0"; sha256="1cbkzl23vgs9hf83ggkcnkmxvvj8867k5b9vhfdrznpqyqv1f2gp"; depends=[Matrix plyr RColorBrewer]; }; lpc = derive2 { name="lpc"; version="1.0.2.1"; sha256="1g1dzm7pcrbrdk1dmhbdhj58j69dzar41al3i8q4gysf3adqzsvv"; depends=[]; }; - lpdensity = derive2 { name="lpdensity"; version="2.3"; sha256="06wa6ngfzlicx8g336b2034r54zflfjlrfllr0wkf87sq84x936i"; depends=[ggplot2 MASS]; }; + lpcde = derive2 { name="lpcde"; version="0.0.1"; sha256="068qiappnwqsbrxf09rskzyq5lydf4bgya21m6yxfvwk7zhrlf73"; depends=[ggplot2 MASS mvtnorm purrr Rcpp RcppArmadillo]; }; + lpdensity = derive2 { name="lpdensity"; version="2.3.1"; sha256="13yqllfffhkzsy8h8kisllw467vaajg4dk51sc6lmc63hs6v7y4r"; depends=[ggplot2 MASS]; }; lphom = derive2 { name="lphom"; version="0.3.1-1"; sha256="18scyg2rd30haawmnlxrkxvg6d8w9qqs7vj9cxvkg9flalsd8isg"; depends=[lpSolve]; }; - lpint = derive2 { name="lpint"; version="2.0"; sha256="0p1np8wlfbax0c7ysc5fs9dai8s00h1v0gan89dbd6bx06307w2r"; depends=[]; }; + lpint = derive2 { name="lpint"; version="2.1"; sha256="0xakxmzgxlg3pmc978sgfnk0wgpbzmm5lbn1wqkz792j0g97jr31"; depends=[]; }; lpirfs = derive2 { name="lpirfs"; version="0.2.0"; sha256="1jn2faqj7szsfc0bicgym493y4cyncbg93rmcc3yv59b0rbxhc8m"; depends=[doParallel dplyr foreach ggplot2 ggpubr gridExtra lmtest plm Rcpp RcppArmadillo sandwich]; }; lpl = derive2 { name="lpl"; version="0.11"; sha256="11w2cr5n72p4wds5dm039rdinhvxjfqvrmisksfpf47jddjxhm42"; depends=[MASS survival]; }; - lpme = derive2 { name="lpme"; version="1.1.2"; sha256="1b0w5ji8hjayni1sh5id193cmanf6n11p16fijkxln4sv4lks4aw"; depends=[decon flexmix locpol Rcpp RcppArmadillo]; }; + lpme = derive2 { name="lpme"; version="1.1.3"; sha256="1ch11cwjci98m7952p9wdsh9fj5y1mjya6ayq0q4wmbm824qfpzb"; depends=[decon flexmix locpol Rcpp RcppArmadillo]; }; lpmodeler = derive2 { name="lpmodeler"; version="0.2-1"; sha256="17k67l03dkjx61p4hwswghjm6awk0zx173x9xafxrfd8jrgsf6kf"; depends=[slam]; }; lpridge = derive2 { name="lpridge"; version="1.0-8"; sha256="0jk4l95z9rcdqkc8lpp4sf1mg2dqj67rhqw1iafrxy5lx4jfaqqx"; depends=[]; }; lqmm = derive2 { name="lqmm"; version="1.5.8"; sha256="1ywiyq6k8fb1ffild1r0rglwc6a5sv1kqfqam28337bbxppdxv8i"; depends=[nlme SparseGrid]; }; @@ -12041,7 +11766,7 @@ in with self; { lrgs = derive2 { name="lrgs"; version="0.5.4"; sha256="0mf6wqlv21z68w81hvpmhgngvdsklf3x2678d9c9lxfmqmpv4a7y"; depends=[mvtnorm]; }; lrmest = derive2 { name="lrmest"; version="3.0"; sha256="1yddkgza672z9y0ipgl92pg9prhmr387zsqf0qbi9k2yzfz2vvs6"; depends=[MASS psych]; }; lrstat = derive2 { name="lrstat"; version="0.1.3"; sha256="1fcqpaw3rkns0lsaixfv2fh4k852gz063y21kk65v4hdv7aizlwr"; depends=[Rcpp]; }; - lsa = derive2 { name="lsa"; version="0.73.2"; sha256="1a33irqa6qvbc02z12rgbgv8kxq2gmahy7j5bg8b23lvvaxif06b"; depends=[SnowballC]; }; + lsa = derive2 { name="lsa"; version="0.73.3"; sha256="16k1g0kh3yaw7azg76aqf3hn3b6jgqg92xx0syai8l0my9ci2zzh"; depends=[SnowballC]; }; lsasim = derive2 { name="lsasim"; version="2.1.2"; sha256="1x6vgdslw6v91l1p1igrvnj3s4ap2igqcx3m95y1ada7kpl3b2jk"; depends=[cli mvtnorm polycor]; }; lsbclust = derive2 { name="lsbclust"; version="1.1"; sha256="1pbai58pfvhfcrd0nj13d54vrn9wrx2xapqhgqa1pkrjwbk5amj7"; depends=[clue doParallel foreach ggplot2 gridExtra mvtnorm plyr Rcpp reshape2]; }; lsbs = derive2 { name="lsbs"; version="0.1"; sha256="14aq80zg89lq7hffv1v1m4n7hbzqzxkazcga4y2fq40ij3v7kv6n"; depends=[ks Matrix numDeriv]; }; @@ -12049,7 +11774,7 @@ in with self; { lsdv = derive2 { name="lsdv"; version="1.1"; sha256="0rl1xszr9r8v71j98gjpav30n2ncsci19hjlc9flzs1s20sb1xpr"; depends=[]; }; lsei = derive2 { name="lsei"; version="1.3-0"; sha256="1dka0rigfw4vj809qma2dkiwjb3nw5635ynnba5cm299cn7hb2b2"; depends=[]; }; lshorth = derive2 { name="lshorth"; version="0.1-6"; sha256="0nbjakx0zx4fg09fv26pr9dlrbvb7ybi6swg84m2kwjky8399vvx"; depends=[]; }; - lsirm12pl = derive2 { name="lsirm12pl"; version="1.0.0"; sha256="0lsmp2nrzi2nqch0qhbgfm17a8ibkwpxving5pka4kzyrbc02qzh"; depends=[ggplot2 GPArotation MCMCpack Rcpp RcppArmadillo]; }; + lsirm12pl = derive2 { name="lsirm12pl"; version="1.0.1"; sha256="1ryaingp5y71jriyps601nwfmzqdr4l0i8f2gjihdmhjibqfkhdg"; depends=[dplyr ggplot2 GPArotation MCMCpack Rcpp RcppArmadillo]; }; lsl = derive2 { name="lsl"; version="0.5.6"; sha256="1hwzklx1qp5ljc059j2hridg3caw4cgn7rbqs8xh2arzcvqdw3rb"; depends=[ggplot2 lavaan reshape2]; }; lslx = derive2 { name="lslx"; version="0.6.10"; sha256="189gpp1ikcp5ld4avipwckdz997v1cx2zas5a8b54nv246kb5hmd"; depends=[ggplot2 lavaan R6 Rcpp RcppEigen]; }; lsm = derive2 { name="lsm"; version="0.2.1.2"; sha256="1sp6c3r3g0q9lynzpcjvfwrp7xml11q66cqcisjvidm79vxjgi5v"; depends=[dplyr ggplot2]; }; @@ -12061,7 +11786,6 @@ in with self; { lsr = derive2 { name="lsr"; version="0.5.2"; sha256="00mbnla74k7xcs8640chkcjydi945dahs2d6h1lv89nsrm8hpzx9"; depends=[]; }; lss2 = derive2 { name="lss2"; version="1.1"; sha256="1rkv26zq36zyh891xkkllxphwplljmzpy15g619x1w4qvsajyyg8"; depends=[quantreg]; }; ltable = derive2 { name="ltable"; version="2.0.1"; sha256="15il58g7m09z0alln12xp1g6y3i8vaxggf229nbgb5gmcf4z97dx"; depends=[clipr Rcpp RcppGSL]; }; - ltbayes = derive2 { name="ltbayes"; version="0.4"; sha256="0kv5k56hmc1m7bv5pmmmk46822szsgwqgpwydn0x56az7xn6hjk6"; depends=[mcmc MHadaptive numDeriv]; }; ltm = derive2 { name="ltm"; version="1.2-0"; sha256="0vhgbk6j0z3limsrbjkjkpfn2whiaij5j4jf1gg66mjs9dlylap1"; depends=[MASS msm polycor]; }; ltmix = derive2 { name="ltmix"; version="0.2.1"; sha256="03i0gr79xiqnny57g0y9w5dfpw51gqhrkff2rh8rggsni20pzm1h"; depends=[gtools pracma]; }; ltmle = derive2 { name="ltmle"; version="1.2-0"; sha256="1mqrf77319cjs3q48iigrkjc3rjibz7qyij49a7l0nim3c1hd0b0"; depends=[Matrix matrixStats speedglm]; }; @@ -12094,7 +11818,7 @@ in with self; { lymphclon = derive2 { name="lymphclon"; version="1.3.0"; sha256="1jns41sk2rx1j3mg06dzy434k30gpfhbkn6s47fmyv1y8701vfl0"; depends=[corpcor expm MASS]; }; m2b = derive2 { name="m2b"; version="1.0"; sha256="0agzw67mmwrw1f61yn24z5w1pgjssdapg3li0a53i3ylnij45mzr"; depends=[caret caTools e1071 geosphere ggplot2 randomForest]; }; m2r = derive2 { name="m2r"; version="1.0.2"; sha256="0vwvpalap4z5x2004c92n0ka7i4l64ry5n8pmxs4vjpd8fyx91gc"; depends=[gmp memoise mpoly Rcpp stringr usethis]; }; - m61r = derive2 { name="m61r"; version="0.0.2"; sha256="0l2c2b6bvf79lrw586vfj3nrw9l9w8zk1hfhg3iqb50ql02c95an"; depends=[]; }; + m61r = derive2 { name="m61r"; version="0.0.3"; sha256="0mhi70rvqgzrgmp261shlq5jdxxhjawdxfsfr0cyfyyils7xs7ln"; depends=[]; }; mAr = derive2 { name="mAr"; version="1.1-2"; sha256="0i9zp8n8i3fxldgvwj045scss533zsv8p476lsla294gp174njr7"; depends=[MASS]; }; mBvs = derive2 { name="mBvs"; version="1.5"; sha256="1fmi4ap55jl06swivspk24acwf5n4wd9agiw330z15x427j579s3"; depends=[]; }; mDAG = derive2 { name="mDAG"; version="1.2.2"; sha256="0k85sl0jmpcpiz92cz6x3kd8jc6yyfv9z4wm1kyaikcf5q4qlad4"; depends=[bnlearn logistf mgm nnet pcalg Rcpp RcppArmadillo]; }; @@ -12112,6 +11836,7 @@ in with self; { mSTEM = derive2 { name="mSTEM"; version="1.0-1"; sha256="0mh09mqqpq9k8jrxs9d39009idld3b4y98ik75czdy580jmdg7mm"; depends=[doParallel foreach latex2exp]; }; mSimCC = derive2 { name="mSimCC"; version="0.0.1"; sha256="1f15r214srcdb4yacmy4hq890a674iqd2s7bry5dk20k46qdl026"; depends=[doParallel foreach]; }; mStats = derive2 { name="mStats"; version="3.4.0"; sha256="196fjnld26dmirga4mghlvsrj4fgnw08wdg77masxm15kpvm1x1d"; depends=[]; }; + maGUI = derive2 { name="maGUI"; version="4.0"; sha256="0r54r9p1j8mnqsm0r0c3glz9p9vz7mcdyqlc6lpi7rdy9n61b7r5"; depends=[Biobase]; }; maSAE = derive2 { name="maSAE"; version="2.0.3"; sha256="0453rvfhi4zvjhbkjammy81gxi6ax75gs8iqpnphbrv60agz0bjc"; depends=[]; }; maat = derive2 { name="maat"; version="1.0.2"; sha256="1fw1kk59qz86vahwrk8xyifd8lyag7xch2mvhr7jk5wsbk7clrcl"; depends=[diagram MASS Rdpack readxl TestDesign]; }; mable = derive2 { name="mable"; version="3.0.1"; sha256="14vv0dhfrsbxqs8nmisx1ka9r4h9nhgj4mjqnakwchgr58jhpwxb"; depends=[doParallel foreach icenReg iterators survival]; }; @@ -12122,7 +11847,7 @@ in with self; { mactivate = derive2 { name="mactivate"; version="0.6.6"; sha256="0qqhniq0wdhazhfiiw7g2b0v8jkc8jl2m117k1c6gnajg8gs1ymn"; depends=[]; }; maczic = derive2 { name="maczic"; version="0.2.0"; sha256="0r60q34ff38cdxf20b1f07wc4rbac1ch0chri36x221k2cnpxnhh"; depends=[BB emplik MASS mathjaxr mediation pscl sandwich survival]; }; mada = derive2 { name="mada"; version="0.5.10"; sha256="1hllv371dm307nkpld0aszjyxfgnajr7gb9zwh40pyzw4q4a2rqb"; depends=[ellipse mvmeta mvtnorm]; }; - maddison = derive2 { name="maddison"; version="0.1"; sha256="1ji51wnj0ybjd30b4bwn5npyswrmcfrbxcmdlngwzvca1knh8g1c"; depends=[]; }; + maddison = derive2 { name="maddison"; version="0.2"; sha256="0v6s28kzghpxrj6sw94c3ys7k4z1h89kdx8ns1991m8q2v51bx1f"; depends=[]; }; madgrad = derive2 { name="madgrad"; version="0.1.0"; sha256="0cxf1b57cl7qwax60wv4jvcac762ara2i18nb1fcjp954mwgwnlb"; depends=[rlang torch]; }; maditr = derive2 { name="maditr"; version="0.8.3"; sha256="108y240b92z5nrjp9rq5baaxncfv1g114garfv87vnwnz7bsd8c7"; depends=[data_table magrittr]; }; madness = derive2 { name="madness"; version="0.2.7"; sha256="0vcpydqnpmg9rvvzyjyqvd3qgs42n8cr9cafai51989v2w2bcf85"; depends=[expm Matrix matrixcalc]; }; @@ -12141,24 +11866,24 @@ in with self; { magmaR = derive2 { name="magmaR"; version="1.0.2"; sha256="19jnzggjqnlv3gnc3zjfmphkwjy1y5xp6bgc2nnr6mwfs4rfxscn"; depends=[crul jsonlite]; }; magree = derive2 { name="magree"; version="1.1"; sha256="0q0v1mx4k1hry0l21611z9jx967l89xpjddvw2v1v9c3kl11kfi6"; depends=[]; }; magrittr = derive2 { name="magrittr"; version="2.0.3"; sha256="1ljmrrm36y31db5z4cl863ap8k3jcaxk0qzy3f0cn6iag4zzigx2"; depends=[]; }; - maic = derive2 { name="maic"; version="0.1.3"; sha256="1s6rq3v0dk0fm1csq0w8bb52kldaimmsgprmcjj1il6pr2936d3a"; depends=[Hmisc matrixStats weights]; }; + maic = derive2 { name="maic"; version="0.1.4"; sha256="0ba0kg5kgnn2g33mmhj9x8ichckyybbpn5xxc56qxvk2w2xv2wpj"; depends=[Hmisc matrixStats weights]; }; maicChecks = derive2 { name="maicChecks"; version="0.1.2"; sha256="1c2n8avrhx0lvw9hi5slymm49lzf37hbkqzkqy230aikgmpv0cpa"; depends=[data_table ggplot2 lpSolve quadprog tidyr]; }; mail = derive2 { name="mail"; version="1.0"; sha256="1m89cvw5ba4d87kp2dj3f8bvd6sgj9k56prqmw761q919xwprgw6"; depends=[]; }; mailR = derive2 { name="mailR"; version="0.8"; sha256="0p6vxzpyms1pxdb0j07izzxinw8xfmmbsj35nkypxyjv92qi802k"; depends=[assertthat R_utils rJava stringr]; }; mailmerge = derive2 { name="mailmerge"; version="0.2.4"; sha256="0rffvkh7v9r3pdbdclj5mx78dk5qszqpm8z7jp4x9h3jiyrh40gp"; depends=[commonmark fs glue gmailr googledrive lifecycle magrittr miniUI purrr rmarkdown rstudioapi shiny]; }; mailtoR = derive2 { name="mailtoR"; version="0.1.0"; sha256="0mnzblhy2vbxkf0k49bw1g08jw84s59zxbjrva2j2q347wzf4rgk"; depends=[glue htmltools]; }; - majesticR = derive2 { name="majesticR"; version="0.1.1"; sha256="0x23p4js9cfnj8c33cp0fql5pvs4fn4frbbzpq85mxjhiifkxxpf"; depends=[jsonlite urltools]; }; makeFlow = derive2 { name="makeFlow"; version="1.0.2"; sha256="0r7a0klgx144rnks0fhjflnf8vfyyx2544n86nnxkp6cdvw0b4pw"; depends=[dplyr RColorBrewer]; }; makeProject = derive2 { name="makeProject"; version="1.0"; sha256="09q8xa5j4s5spgzzr3y06l3xis93lqxlx0q66s2nczrhd8nrz3ca"; depends=[]; }; makedummies = derive2 { name="makedummies"; version="1.2.1"; sha256="062rvijhy2dybpgxzp44cg46bfyb8lp9yasv3mhskhf3yg717sqp"; depends=[tibble]; }; makemyprior = derive2 { name="makemyprior"; version="1.1.0"; sha256="1h5v1n6b318j36w1c225wq8rdvr3dwsy421x43z0ff9ixidhylbv"; depends=[ggplot2 MASS Matrix rlang shiny shinyBS shinyjs visNetwork]; }; - makepipe = derive2 { name="makepipe"; version="0.1.0"; sha256="087lp7s70nx1zfs3mw4jk43miw4sc0gfd5faxqpnkgbpx01iaa51"; depends=[cli R6 visNetwork]; }; + makepipe = derive2 { name="makepipe"; version="0.2.0"; sha256="1vkhjas5d55n6rs73rccjh53r5cr1i6cn8gnspwir6gmw5fp445a"; depends=[cli nomnoml R6]; }; maketools = derive2 { name="maketools"; version="1.2.2"; sha256="1p98vg5404np5fbiqajznmiqah8lyfv2xf741wjfm2jqkki9nk40"; depends=[sys]; }; malan = derive2 { name="malan"; version="1.0.2"; sha256="0qwf0r2gwpb93gzvyp8vaw7j6rhghr6nbrfp8xw876n5j5b9jhj3"; depends=[dplyr igraph magrittr Rcpp RcppArmadillo RcppProgress tibble tidygraph]; }; malani = derive2 { name="malani"; version="1.0"; sha256="1jps28gfkiysr356ackxf1my5xz6rpx3a2bv68pziy2614hrqbs9"; depends=[e1071]; }; malariaAtlas = derive2 { name="malariaAtlas"; version="1.0.1"; sha256="0k0406pn65ars4d6zlirfdd7z3rl2z82vsx5p97gmxnjjp6gjdpa"; depends=[curl dplyr ggplot2 gridExtra httr raster rgdal rlang sp stringi tidyr xml2]; }; malaytextr = derive2 { name="malaytextr"; version="0.1.2"; sha256="0lal9x2syyc2qbzxy35dbmd4jyxxkqpbygg9x7nyh8vw8k7pf0jh"; depends=[dplyr magrittr rlang stringr]; }; mallet = derive2 { name="mallet"; version="1.0"; sha256="06rksf5nvxp4sizgya7h4sb6fgw3yz212a01dqmc9p5a5wqi76x0"; depends=[rJava]; }; + malvinas = derive2 { name="malvinas"; version="0.1.0"; sha256="1afgyrn7cslrd4qxd9k5l3kyhdi99vx06360yhb9n005xfmd65kf"; depends=[]; }; managelocalrepo = derive2 { name="managelocalrepo"; version="0.1.5"; sha256="180b7ikas1kb7phm4l2z1d8wi45wi0qyz2c8rl8ml3f71b4mlzgc"; depends=[assertthat stringr]; }; mand = derive2 { name="mand"; version="1.0"; sha256="0mjjzrij1yizdyv5z5jsf24xhdck478iwpjx5x4mz0mhxp3nazs3"; depends=[caret imager msma oro_dicom oro_nifti]; }; mandelbrot = derive2 { name="mandelbrot"; version="0.2.0"; sha256="04a288jj8h1a04r584a02wg9dm3c6zifhqwj964ybsvgb4m6g99s"; depends=[reshape2]; }; @@ -12177,7 +11902,7 @@ in with self; { mapStats = derive2 { name="mapStats"; version="2.4"; sha256="18pp1sb9p4p300ffvmzjrg5bv1i7f78mhpggq83myc26c3a593na"; depends=[classInt colorspace Hmisc lattice maptools RColorBrewer reshape2 sp survey]; }; mapaccuracy = derive2 { name="mapaccuracy"; version="0.1.0"; sha256="1rrnbmar8s48kww2x9qjlm68xs55mbc8cnms2crdsaah7787s6aa"; depends=[assertthat gtools reshape]; }; mapbayr = derive2 { name="mapbayr"; version="0.6.0"; sha256="06kczyij4y10xs0ydj85qhgxbgcw2dwa8gjc19di7cwjhbzp9si7"; depends=[dplyr ggplot2 magrittr mrgsolve optimx purrr rlang stringr tibble tidyr]; }; - mapboxapi = derive2 { name="mapboxapi"; version="0.3.1"; sha256="1rqkzc3ggccvn9s1ib23yv3531j433z4xwl0alr8qk23pj3290ff"; depends=[aws_s3 curl dplyr geojsonsf httr jpeg jsonlite leaflet magick png protolite purrr raster rlang sf slippymath stringi tidyr units]; }; + mapboxapi = derive2 { name="mapboxapi"; version="0.3.3"; sha256="0ad5596n86csq403cp62v4aiwmxg4l7qia2hlliypygjf6z1f4pl"; depends=[aws_s3 curl dplyr geojsonsf httr jpeg jsonlite leaflet magick png protolite purrr raster rlang sf slippymath stringi tidyr units]; }; mapboxer = derive2 { name="mapboxer"; version="0.4.0"; sha256="0f873js87dgk8nqnhpxh88svvsbnk81vkm7gycb62mkr4xqsgqs7"; depends=[geojsonsf htmltools htmlwidgets magrittr purrr yaml]; }; mapcan = derive2 { name="mapcan"; version="0.0.1"; sha256="1a4135wc1h4nzcv6xq0bg75i744wyq8p7q0ix7y2x2gb6s35w46k"; depends=[dplyr ggplot2 magrittr]; }; mapchina = derive2 { name="mapchina"; version="0.1.0"; sha256="0f6ayq4izqxcj0hi2vfg0pc239hxgg7abb5476v5mfjjyi156mni"; depends=[sf]; }; @@ -12187,6 +11912,7 @@ in with self; { mapfit = derive2 { name="mapfit"; version="0.9.7"; sha256="16a318bz3my27qj0xzf40g0q4bh9alg2bm6c8jbwgswf1paq1xmx"; depends=[Matrix]; }; mapi = derive2 { name="mapi"; version="1.0.5"; sha256="1yljvapzkb43i2sbqsmn5aqp95hm8gjkz8m41x1chwyfddrzjsbw"; depends=[data_table pbapply Rcpp sf]; }; maple = derive2 { name="maple"; version="0.99.5"; sha256="1cg7grvnrfzdqghlfv5bsii6ips3mykgaw85vx0z9jafhdfpd32f"; depends=[dbarts dplyr ggalluvial ggplot2 plotly rlang Seurat shiny spruce]; }; + mapme_biodiversity = derive2 { name="mapme.biodiversity"; version="0.1.1"; sha256="012jf0p459rvsqhr9hmnfwsalbaigjlv4cfg0hs2gxydirdv16np"; depends=[curl data_table dplyr httr magrittr pbapply rvest sf stringr terra tibble tidyr tidyselect]; }; mapmisc = derive2 { name="mapmisc"; version="1.8.0"; sha256="0xp2ns6j8craz74jw4gjjhzkfbbihcy8d9dg1i08hiws743kzd8s"; depends=[raster sp]; }; mapping = derive2 { name="mapping"; version="1.3"; sha256="1in4fjdiass73fdh3y937c600bdbv8gwjzxb5wj07wkc76jxb5ba"; depends=[cartography curl dplyr geojsonio ggplot2 htmltools httr jsonlite leaflet leafpop leafsync mapview rgdal s2 sf stringi stringr tmap tmaptools viridisLite]; }; mappings = derive2 { name="mappings"; version="0.1"; sha256="1f7m6nbdzdcxsk4m8rh8fzrck8pzxl2lgfz5c6wramwmp8rxczzb"; depends=[]; }; @@ -12203,16 +11929,16 @@ in with self; { mapscanner = derive2 { name="mapscanner"; version="0.0.6"; sha256="017m33v2523rjmspfbzq1xnb3clzmbn4p1qqzp480j71wy5c1dry"; depends=[cli curl fs glue magick magrittr memoise pdftools png purrr raster Rcpp reproj RNiftyReg sf slippymath tibble]; }; mapsf = derive2 { name="mapsf"; version="0.4.0"; sha256="1h6szi33rbk279sh1ws4vhx6h7dl6zk5dpd7rjhay7811dq6q7wh"; depends=[classInt Rcpp sf]; }; maptiles = derive2 { name="maptiles"; version="0.3.0"; sha256="025n9fpl55n9wnslpjqr4z5y0q4mn68dplb3fm7wyn968kw7sbig"; depends=[curl png sf slippymath terra]; }; - maptools = derive2 { name="maptools"; version="1.1-3"; sha256="0ixvh4qbdjjl19ghgbb2r26yksya977q1yzs4yn5wshwm0763xph"; depends=[foreign lattice sp]; }; + maptools = derive2 { name="maptools"; version="1.1-4"; sha256="1jgx8iiirj8qhrmh19mkisa35jcql7352dmc7lvwi5vxg3wjbvpk"; depends=[foreign lattice sp]; }; maptpx = derive2 { name="maptpx"; version="1.9-7"; sha256="0f85i3vwr5rvz261z6j7x15gsahxrq4qqddfb0qyhypgihvwh857"; depends=[slam]; }; maptree = derive2 { name="maptree"; version="1.4-8"; sha256="1x35nk4fi2b62krcvcv187n5sbqrgvw4pbm7r19ps3jlanpi5ksm"; depends=[cluster rpart]; }; - mapview = derive2 { name="mapview"; version="2.10.0"; sha256="1amscd7h5c26r8w6bp68a855vy7y8h84z7dvcc8vz6jbcln915xm"; depends=[base64enc htmltools htmlwidgets lattice leafem leaflet leafpop png raster satellite scales servr sf sp webshot]; }; + mapview = derive2 { name="mapview"; version="2.11.0"; sha256="02nkyh3m2l3jblii25c7p2yjjx7lka5l6hx7h882060959bczy47"; depends=[base64enc htmltools htmlwidgets lattice leafem leaflet leafpop png raster satellite scales servr sf sp webshot]; }; mar1s = derive2 { name="mar1s"; version="2.1.1"; sha256="1ljkvgxrramfx1rnp2rg6516mjxaa6s96amrnmqymnyjz7wlf37l"; depends=[cmrutils fda zoo]; }; march = derive2 { name="march"; version="3.3.2"; sha256="1qdjajb5mkq2r7p224kbxhf01s75hry5c5hx1cnsb48dfzd2s5xg"; depends=[]; }; marcher = derive2 { name="marcher"; version="0.0-2"; sha256="0hcxbfrwniih4kvx5sxhlffz1pc87kf52v8hvaf193rhhdykis5q"; depends=[magrittr Matrix minpack_lm mvtnorm numDeriv plyr RColorBrewer scales zoo]; }; marelac = derive2 { name="marelac"; version="2.1.10"; sha256="08phsghzvi0z78pkb5lkamni83fsw0bqfri99j6bjf6y14aygif9"; depends=[seacarb shape]; }; marg = derive2 { name="marg"; version="1.2-2.1"; sha256="1r6rl7dhvm8dghm7pm4hfw3924qja65hczl6d47v9ixnv4rxyzr9"; depends=[statmod survival]; }; - margaret = derive2 { name="margaret"; version="0.1.2"; sha256="0sjwz6310s1mph5n414h32ckhh2301glyr5pf7fhvz1rgzfc743c"; depends=[devtools dplyr igraph lubridate purrr readr rlang rvest scholar SnowballC stringi stringr tibble tidyr tidytext tidyverse treemapify usethis widyr writexl]; }; + margaret = derive2 { name="margaret"; version="0.1.3"; sha256="0vxj2ig4q56q35ms2djxz87nfp1rj7bfkr9g9ngz0pz7n3a22j90"; depends=[devtools dplyr igraph lubridate purrr readr rlang rvest scholar SnowballC stringi stringr tibble tidyr tidytext tidyverse treemapify usethis widyr writexl]; }; marginaleffects = derive2 { name="marginaleffects"; version="0.4.1"; sha256="1q35bzsr5h4j850dlhn624f3pwa1x88m1ch7c5p9j7cp4a5vzyf9"; depends=[checkmate generics insight]; }; marginalizedRisk = derive2 { name="marginalizedRisk"; version="2021.2-4"; sha256="0kagl9xghq9nsh9qvx165j1a5plh08zxhb6nm8j402mnl8pq7a4z"; depends=[]; }; margins = derive2 { name="margins"; version="0.3.26"; sha256="0sx5xjbzz1rjz8bklfna3171s53xsh123x4bh0kmwp006v8rv309"; depends=[data_table MASS prediction]; }; @@ -12227,17 +11953,15 @@ in with self; { markophylo = derive2 { name="markophylo"; version="1.0.8"; sha256="05hfykjzx4wf2p1d6dvyx5lizfxmq3zprvnfg74r7l1izp7wpl38"; depends=[ape numDeriv phangorn Rcpp RcppArmadillo]; }; markovMSM = derive2 { name="markovMSM"; version="0.1.0"; sha256="022j7cg51ga5vwvkdn74xliqdhk5c26fh1z62iicbyvigjrp8r7g"; depends=[mstate survidm survival]; }; markovchain = derive2 { name="markovchain"; version="0.8.6"; sha256="1al3b76qi6var3gpfqxy6kp0varyp7sbblrhm6hvzf8nwqvl3hq2"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; }; - marl = derive2 { name="marl"; version="1.0"; sha256="0rndnf3rbcibv3gsrw1kfp5zhg37cw9wwlz0b7dbwprd0m71l3pm"; depends=[]; }; marmap = derive2 { name="marmap"; version="1.0.6"; sha256="16r7in3m63l7fdwxwfdphcd4fr073fb675zabjxphpxmclikyxdz"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; marqLevAlg = derive2 { name="marqLevAlg"; version="2.0.6"; sha256="12jvrya818rdg6bn45v16hz78kxzzf53w914vdfqcd644438xad8"; depends=[doParallel foreach]; }; mase = derive2 { name="mase"; version="0.1.3"; sha256="10wyrvh3p344inx5qbzkwh4rr3lmpnh1ikhrghmlqr5607kiy3fm"; depends=[boot dplyr glmnet magrittr Rdpack rpms survey]; }; mashr = derive2 { name="mashr"; version="0.2.57"; sha256="1jjmqd3z3f7bxj6zw7yw6k9j6aiwnihd8cm14271kkpyy0id8slm"; depends=[abind ashr assertthat mvtnorm plyr Rcpp RcppArmadillo RcppGSL rmeta softImpute]; }; - maskRangeR = derive2 { name="maskRangeR"; version="1.0"; sha256="12g9cx7l2bwl3wzka11p73r6w47h4nma3rdlhm9kq1a69ig5cm68"; depends=[dismo dplyr e1071 gdalUtils lubridate magrittr maptools raster rgdal sp tidyverse virtualspecies]; }; + maskRangeR = derive2 { name="maskRangeR"; version="1.1"; sha256="1pdj0jdxrqss6hp20163fh1ywdd6wmwjl4s8gnpd3m9d1j955gr3"; depends=[dplyr e1071 lubridate magrittr raster sp]; }; mason = derive2 { name="mason"; version="0.3.0"; sha256="1x5wiagb1sy5gkp0xkbr1jzhrjg1c2bqdh4hy6igwcnws2cbhxyr"; depends=[broom dplyr magrittr purrr rlang tibble tidyr tidyselect]; }; masscor = derive2 { name="masscor"; version="0.0.7.1"; sha256="1153gx648csmzc2znf7l84f134qzp238hqj2s60r9najk1pczgf6"; depends=[metRology]; }; massiveGST = derive2 { name="massiveGST"; version="1.0"; sha256="1mq3w2sx3ifydcs3yx96jm769n1i58qkw7hbw3kam01g1f2f4ys3"; depends=[formattable igraph msigdbr visNetwork WriteXLS]; }; mastif = derive2 { name="mastif"; version="1.0.1"; sha256="1jw7dz4qxyj848qm7lwg0klcw028260nizdi5gdwf7wd5a2nis9c"; depends=[corrplot RANN Rcpp RcppArmadillo repmis xtable]; }; - matR = derive2 { name="matR"; version="0.9.1"; sha256="1qw2vqmpq7gc3dmr9r000ccjj7xa0h82waxnvryz3l17ggryyjjm"; depends=[BIOM_utils MGRASTer]; }; matahari = derive2 { name="matahari"; version="0.1.3"; sha256="03mhn4qh1vcz2hr0mxp6gijwgrzvbpfb8dq7lqhchbk5gq5g3fnh"; depends=[clipr jsonlite purrr readr rlang rstudioapi tibble]; }; match2C = derive2 { name="match2C"; version="1.2.3"; sha256="1ccmva0qgks2r6ya39vvrk1dx8ixmqiy3p0iz8hxcg5qin2pfzgi"; depends=[ggplot2 mvnfast rcbalance Rcpp]; }; matchMulti = derive2 { name="matchMulti"; version="1.1.10"; sha256="1cbxgqx36f19lccd9qjrq3zq3ghqbfjb5pim40k2aykpqp6wmqba"; depends=[coin dplyr Hmisc MASS mvtnorm plyr rcbsubset rlang sandwich tidyr weights]; }; @@ -12252,7 +11976,7 @@ in with self; { mathpix = derive2 { name="mathpix"; version="0.5.0"; sha256="0imd2rxzh3zndl3laa1fx3m90zr97l02y42s7dhi6b0g2m2lirz4"; depends=[base64enc httr magick purrr rstudioapi texPreview]; }; matie = derive2 { name="matie"; version="1.2"; sha256="1ymx49cyvz63imqw5n48grilphiqvvdirwsrv82p7jgxdyav2xv0"; depends=[cba dfoptim gplots igraph mvtnorm seriation]; }; matlab = derive2 { name="matlab"; version="1.0.2"; sha256="0m21k2vzbc5d3c93p2hk4208xyd2av2slg55q5j1ibjidiryqgd2"; depends=[]; }; - matlab2r = derive2 { name="matlab2r"; version="1.0.0"; sha256="0sg0llilxf3xfv4d9wskp6zh4b00sv7cf1xdc56icwj78sz2d7pk"; depends=[]; }; + matlab2r = derive2 { name="matlab2r"; version="1.1.1"; sha256="0kfnaqqp4rbq17ki0p14bdh5465bk2fgmpk9sgndlz128dpa05bv"; depends=[styler]; }; matlabr = derive2 { name="matlabr"; version="1.5.2"; sha256="1ba6cajnzldb1gmn7rf0b198h6mdh58r3frm0z0cmvbinspwz3x7"; depends=[stringr]; }; matlib = derive2 { name="matlib"; version="0.9.5"; sha256="0m03zygd43r0z7cldiwsc91p1xyni6pdvwm8pz4jcg5bmqasfg0w"; depends=[car MASS rgl xtable]; }; matman = derive2 { name="matman"; version="1.1.3"; sha256="0mwxxqqlg6yydc06hrjqk5ly686s21w5i5z40axxwkmpzyz84sqv"; depends=[data_table dplyr DT forecast lubridate parsedate plotly shiny shinydashboard shinyWidgets tidyr tidyselect]; }; @@ -12261,12 +11985,11 @@ in with self; { matrixLaplacian = derive2 { name="matrixLaplacian"; version="1.0"; sha256="1ixqdv3sz3sc79wn3vqhlq79j7x7cvl878m5hgvbcg6klfvlmmci"; depends=[scatterplot3d]; }; matrixNormal = derive2 { name="matrixNormal"; version="0.1.0"; sha256="1n85ibx4r7xzm4yz954cg7qm9isma920bxfy6fmj58g4bms30skw"; depends=[mvtnorm]; }; matrixProfile = derive2 { name="matrixProfile"; version="0.5.0"; sha256="0nd54k878xf7hzwxawh03c3na4jfvb68afarkwrmmffjlp3i8a9g"; depends=[fftw signal TTR zoo]; }; - matrixStats = derive2 { name="matrixStats"; version="0.61.0"; sha256="16pxsba5i51ifbbgvxln2w6nigbwd3290b2ckgzn5bmib7nc1lyv"; depends=[]; }; + matrixStats = derive2 { name="matrixStats"; version="0.62.0"; sha256="1jjfsi5vzx6js7phlnd3v64fd05fg0jyz8iq5pivy36jdmmh3ql5"; depends=[]; }; matrixStrucTest = derive2 { name="matrixStrucTest"; version="1.0.0"; sha256="06la9xmpi1viyjml4m1akbna3lwkz5lnq95v1nnf73i9zpfwz03k"; depends=[]; }; matrixTests = derive2 { name="matrixTests"; version="0.1.9.1"; sha256="1fixzjbrwm0shyvkishff6l5yanqnvhcgbidkw8fsalf3jwwc0ix"; depends=[matrixStats]; }; matrixcalc = derive2 { name="matrixcalc"; version="1.0-5"; sha256="1jkgl1v1q7cqpl1rf49qahdr9y0f33f0ldsbgby8xhfv0vpy21jr"; depends=[]; }; matrixdist = derive2 { name="matrixdist"; version="1.1.3"; sha256="0yvw6rn7js06qhz2qpj9m5h9hjwa7nswkmkyzi1vpa24inbfpzah"; depends=[Rcpp RcppArmadillo]; }; - matrixpls = derive2 { name="matrixpls"; version="1.0.13"; sha256="0m9gqq5waicj3znlsyz50cj6w1x6rkvfwknavhxid8r4p9h891ak"; depends=[assertive lavaan MASS matrixcalc psych]; }; matrixprofiler = derive2 { name="matrixprofiler"; version="0.1.7"; sha256="0jicclzjil9yqlapzji23wm916aprv1fyad1qrn6ip7kap3m2kln"; depends=[checkmate Rcpp RcppParallel RcppProgress RcppThread]; }; matrixsampling = derive2 { name="matrixsampling"; version="2.0.0"; sha256="05dbn7rj07jx1hj7i6k3akf11hysxg6v32kav9fvsqmiy2zkippa"; depends=[keep]; }; matsbyname = derive2 { name="matsbyname"; version="0.5.0"; sha256="1k1hzwhbj2ajk3qxddx328hhzm69dxw7b67rhp4ifdnwymbics4b"; depends=[assertthat dplyr lifecycle magrittr purrr RCLabels rlang tibble]; }; @@ -12287,7 +12010,7 @@ in with self; { maybe = derive2 { name="maybe"; version="0.2.1"; sha256="07h8q656yjp58zl9xzks6jh77yhzszc3kggmlnj737ldla4d06n0"; depends=[magrittr]; }; mazeGen = derive2 { name="mazeGen"; version="0.1.3"; sha256="192xygg3l4rpqp49sgd5hpp4h3f8wjhyldn0l8abxhsks7jd2kfb"; depends=[igraph]; }; mazealls = derive2 { name="mazealls"; version="0.2.0"; sha256="14j6syw1zkgs4cnmxzqpm6klmgvck2gg97wkzmy9al6n0biy8gmb"; depends=[TurtleGraphics]; }; - mazeinda = derive2 { name="mazeinda"; version="0.0.1"; sha256="0ns4ib73y4fghf7p1wg0a05js4mqr66dpp49p1h039pqrb0f1vwd"; depends=[foreach]; }; + mazeinda = derive2 { name="mazeinda"; version="0.0.2"; sha256="0c32vh75d4wjpyxrqwyf16fw6jbmig037py3c1417hx3621782kh"; depends=[foreach]; }; mazing = derive2 { name="mazing"; version="1.0.5"; sha256="1nabv5hxb58d56r4z8v4glhwiz5lf8j9gdlwncxazm6j2fcjh26s"; depends=[]; }; mbRes = derive2 { name="mbRes"; version="0.1.3"; sha256="1gm195lwhjhkajsksa53b7fpn1574m6ayciplj74biyiz9pwyjms"; depends=[cowplot data_table dplyr forcats ggforce ggplot2 magrittr purrr rlang tibble tidyr]; }; mbbefd = derive2 { name="mbbefd"; version="0.8.10"; sha256="0963lwwb629dwgv1jk4y3438rfj0lm9g6q930xbgxdsc34hn3ppb"; depends=[actuar alabama fitdistrplus gsl MASS Rcpp]; }; @@ -12297,7 +12020,7 @@ in with self; { mbir = derive2 { name="mbir"; version="1.3.5"; sha256="10sd5gk2k94cmi49nbpywqvh9bxj9q3psa3d00zmw1a7d6c0jjpd"; depends=[effsize psych]; }; mblm = derive2 { name="mblm"; version="0.12.1"; sha256="1fipb3bryaimr30lcxsxrn0ymv24z39swca7s4z7p9xcfg3ban1b"; depends=[]; }; mbmixture = derive2 { name="mbmixture"; version="0.2-5"; sha256="0w6a77lavdsrg9sf6jmi3xyxgx4d0v2nf85fh9bnrjdp51g6d0zi"; depends=[numDeriv]; }; - mboost = derive2 { name="mboost"; version="2.9-5"; sha256="0yg07fdd1sbjfhhxn1dqgph2vzqyq7l52cdk5iq2a2zy1vh176yg"; depends=[lattice Matrix nnls partykit quadprog stabs survival]; }; + mboost = derive2 { name="mboost"; version="2.9-7"; sha256="01ln0vxbbx1fq77q17sx61si82lhfibbchsnf2yw9032cn8wnhh2"; depends=[lattice Matrix nnls partykit quadprog stabs survival]; }; mboxr = derive2 { name="mboxr"; version="0.2.0"; sha256="1d11fpz17k65dzw9sjc7zfs1jpajzrh2pvr2s435p83g3mpf40vz"; depends=[dplyr lubridate magrittr purrr reticulate stringr tibble tidyr]; }; mbr = derive2 { name="mbr"; version="0.0.1"; sha256="08534d0ssj5zli7880a2wzl46ydf87gn5xlv6xp0iph71wlpc52y"; depends=[data_table dplR MASS Matrix Rfast]; }; mbrdr = derive2 { name="mbrdr"; version="1.1.1"; sha256="1ck0l2zp10xlg2d99glb76fxhc1r21aknk8x8452v25gpaqvir4c"; depends=[]; }; @@ -12306,17 +12029,15 @@ in with self; { mc_heterogeneity = derive2 { name="mc.heterogeneity"; version="0.1.2"; sha256="1nsqbc4cqyg6g3s6ish3fbhqygy1kay68smbv0rhivp0x0dv7can"; depends=[boot_heterogeneity metafor]; }; mc2d = derive2 { name="mc2d"; version="0.1-21"; sha256="1vp7xai7pk260053g2g23wzwn6l1pai0n4vjwjg1j8qd6d95j8mi"; depends=[mvtnorm]; }; mcBFtest = derive2 { name="mcBFtest"; version="0.1.0"; sha256="1fmn9pzbvk508ljspksppqxdvggx5bvipgs54nz9605y6p8zzmi5"; depends=[MASS]; }; - mcGlobaloptim = derive2 { name="mcGlobaloptim"; version="0.1"; sha256="1p8841y9a4yq51prv6iirgw9ln8jznx8nk547sc5xlznksjy1g9n"; depends=[randtoolbox snow]; }; mcMST = derive2 { name="mcMST"; version="1.0.1"; sha256="18ka76g9pgpycaw0hl8vxpabd8584q1l5d3xmrzy1zwincsg7vgs"; depends=[BBmisc checkmate ecr ggplot2 gtools lhs parallelMap reshape2 vegan]; }; mcStats = derive2 { name="mcStats"; version="0.1.2"; sha256="1r8dxdfcvznl2968xr6fbany1rh7wq5z1p7fhdf5g4b5l28j8pf9"; depends=[dplyr ggplot2 ggthemes gridExtra magrittr rlang tidyr]; }; mcb = derive2 { name="mcb"; version="0.1.15"; sha256="0k986m2vyvfqxw3jmlyvf6r5bq68y92fymy03lffq5lmiqhypixj"; depends=[ggplot2 glmnet lars leaps MASS ncvreg reshape2 smoothmest]; }; mcbiopi = derive2 { name="mcbiopi"; version="1.1.6"; sha256="1caw2sy15hw2zw0bdynwnsa7hn4rly34hlxp06nwm5lssz8l2597"; depends=[]; }; - mcboost = derive2 { name="mcboost"; version="0.4.0"; sha256="1p9bh1w4d215y971dj9n5bh9i5svi1vr48v3spw1qs0idcj122q4"; depends=[backports checkmate data_table glmnet mlr3 mlr3misc mlr3pipelines mlr3proba R6 rpart]; }; + mcboost = derive2 { name="mcboost"; version="0.4.1"; sha256="1dr8k8rws6qvma83s851wqb5wpbqb2qcxfb08z814x7790rv3g6i"; depends=[backports checkmate data_table glmnet mlr3 mlr3misc mlr3pipelines mlr3proba R6 rpart]; }; mcc = derive2 { name="mcc"; version="1.0"; sha256="0p661a870bvh3xhcahqqq85azn9rjl3vacjy96jsdn86irj4s0vi"; depends=[]; }; mcca = derive2 { name="mcca"; version="0.7.0"; sha256="01nm0plgkik241qhd06v1vs84lf7agc0vkxa27cpr5qlfl4cm4zb"; depends=[caret e1071 MASS nnet pROC rgl rpart]; }; - mccca = derive2 { name="mccca"; version="0.1.0"; sha256="111phszicjn8ihcdlg9x41j3jllbz3hl12m58w1l25jd6mrrss9v"; depends=[dummies ggplot2 magic RColorBrewer stringr wordcloud]; }; mccf1 = derive2 { name="mccf1"; version="1.1"; sha256="023pvjfc1iv7hac3gz5rakg6ljs92j0qfm4givad5iiwv5n4k3zr"; depends=[ggplot2 ROCR]; }; - mcclust = derive2 { name="mcclust"; version="1.0"; sha256="00qprmsjwbn2d0jl7p9mz8pv7k8ld3mzk862pr1grigk0lqwhx06"; depends=[lpSolve]; }; + mcclust = derive2 { name="mcclust"; version="1.0.1"; sha256="1mifgrm2canfcrln9rspqwws1f61vrana5m4lap54lys0kiyrrqq"; depends=[lpSolve]; }; mccmeiv = derive2 { name="mccmeiv"; version="2.1"; sha256="1lkghvvwxvg474p37h1mpbackr5qmy05qkx8yiq4x066wrfq1w1i"; depends=[MASS numDeriv survival]; }; mccr = derive2 { name="mccr"; version="0.4.4"; sha256="1scqds1yx317qmjappy2h1m564dcmsqqfpdm8pm3plalag16xrhj"; depends=[]; }; mcemGLM = derive2 { name="mcemGLM"; version="1.1.1"; sha256="0p6z32c69ik8wjjn50vzjmr4plsfbxr2p0hr50wknkwwb7i20hp6"; depends=[Rcpp RcppArmadillo trust]; }; @@ -12326,8 +12047,7 @@ in with self; { mcglm = derive2 { name="mcglm"; version="0.7.0"; sha256="0xk641g4ymbvh8dhg83d66ybcib52fyxdfigvmc8xghd8x9w2prh"; depends=[assertthat Matrix Rcpp RcppArmadillo]; }; mcheatmaps = derive2 { name="mcheatmaps"; version="1.0.0"; sha256="1gglm32xpmim38m7fziczgqfbpcq2899lxardsrzg6j1vhmf765y"; depends=[gridBase]; }; mclcar = derive2 { name="mclcar"; version="0.2-0"; sha256="0zgf7ha22586nh1yzdnhz1rzrqkn6yzr12qva9ag297ry4z4bn5y"; depends=[fields maxLik nleqslv rsm spam spatialreg spdep]; }; - mcll = derive2 { name="mcll"; version="1.2"; sha256="0i9zqbh0l9a9mv4558gbdq9mh52chanykyfwmiymmxygxhp809sz"; depends=[locfit statmod]; }; - mclogit = derive2 { name="mclogit"; version="0.8.7.3"; sha256="1as3mqqzxjdr7saw4vpgg88yqbax86z1qhl9s1jm49cw7nyqigxz"; depends=[Matrix memisc]; }; + mclogit = derive2 { name="mclogit"; version="0.9.4.2"; sha256="0nqp8jlq5vv3inmvbwlz89pi136pakqnxjmqmvz16jvq49g1bx6y"; depends=[Matrix memisc]; }; mclust = derive2 { name="mclust"; version="5.4.9"; sha256="0s4mva0n04f3pl41msmzhlh7pnk0zbmf06n826smxkw6mz327wb5"; depends=[]; }; mclustAddons = derive2 { name="mclustAddons"; version="0.6"; sha256="1sk1inwln76k7ygja9sdzil1i1q8yqnvyd0l0vm81ih66ilivbzb"; depends=[foreach iterators mclust Rcpp RcppArmadillo]; }; mclustcomp = derive2 { name="mclustcomp"; version="0.3.3"; sha256="1kxrms77m7n9lv32771zvwg82xqh5kx8al6f0bknsj8idq8aqbh3"; depends=[Rcpp RcppArmadillo Rdpack]; }; @@ -12348,13 +12068,13 @@ in with self; { mcr = derive2 { name="mcr"; version="1.2.2"; sha256="0n1wd8z7j9s20ym8m6vbpixibmfb3qkykb3z92jv3pbamjf2sxsc"; depends=[]; }; mcreplicate = derive2 { name="mcreplicate"; version="0.1.2"; sha256="12pmfp75sc00cdrkx4xniq74qqx3y67qxwdrrbp2mf562pdn2gmn"; depends=[]; }; mctest = derive2 { name="mctest"; version="1.3.1"; sha256="1d248r9ifwl1xhvka6z69l943rvbq7s7ag6vqp9lljkcybvg75f2"; depends=[]; }; - mctq = derive2 { name="mctq"; version="0.1.0"; sha256="1j4f5jfwq827x0dd19xfwjrxf1rclr5813l2rcirxifsncs5hbnc"; depends=[checkmate cli dplyr hms lifecycle lubridate]; }; + mctq = derive2 { name="mctq"; version="0.2.0"; sha256="15h8xgrkg5r6frnd7z4xxj95pwpnpsafrzmsmn3nvrxhbs9h609i"; depends=[checkmate cli dplyr hms lifecycle lubridate]; }; mcunit = derive2 { name="mcunit"; version="0.3.2"; sha256="16nnm50g87iaf058b1w5w5hphx99xplczndcbv1356f2gs2gfy6l"; depends=[Rdpack rlang simctest testthat]; }; mcvis = derive2 { name="mcvis"; version="1.0.8"; sha256="0dc7jwdfzyn6x785lbwikpql96b3gh9fhb65fv4sk9ib28b2kpmy"; depends=[assertthat dplyr ggplot2 igraph magrittr psych purrr reshape2 rlang shiny]; }; mcwr = derive2 { name="mcwr"; version="1.0.0"; sha256="1aqmrxjmllq1waw3pzmwhqd07q02n1h1g6c0qi1fvay4xz0rwgik"; depends=[]; }; md = derive2 { name="md"; version="1.0.4"; sha256="13z8f3p84kivk6j58fb1qpzrmml41mq9pgv9nv2gvxrhyhanzi46"; depends=[]; }; md_log = derive2 { name="md.log"; version="0.1.1"; sha256="0ix5nz38xzlhrga40hfhlfss938mrfbni2wysvz2qbpm59qxrhg0"; depends=[futile_logger]; }; - mda = derive2 { name="mda"; version="0.5-2"; sha256="1hq0zhhz9klmp4zcr1w8hyn7s1h9kfg57d2l2mfm7psx459j0krl"; depends=[class]; }; + mda = derive2 { name="mda"; version="0.5-3"; sha256="0qw4scc2w7jmnxssj5w2mdxb9rrl4dscqn54gplzm1gk2yf419mx"; depends=[class]; }; mdapack = derive2 { name="mdapack"; version="0.0.2"; sha256="1dfcjh8yax06m890ql0kc2rn539z4xbhw7bq9a8cbrm7jnkq03iq"; depends=[covr curl devtools FactoMineR ggplot2 gh git2r httr knitr mice openssl pkgbuild reshape2 rlang rmarkdown roxygen2 spelling testthat VIM]; }; mdatools = derive2 { name="mdatools"; version="0.12.0"; sha256="11dav3ljfff945lr1ldbn9g7grjnny5dmk0w723lrk63cx6jd5f0"; depends=[Matrix]; }; mdbr = derive2 { name="mdbr"; version="0.1.2"; sha256="1c33v2dqz1jjh730p486bi07h9m9clpcfrbvhbvwb8fslqxg76qd"; depends=[readr]; }; @@ -12365,10 +12085,8 @@ in with self; { mdgc = derive2 { name="mdgc"; version="0.1.5"; sha256="03rvyivh68dc8j5rpa2dpr2gnlbswr9kgckiavq1lpiic6kzzm90"; depends=[BH psqn Rcpp RcppArmadillo testthat]; }; mdhglm = derive2 { name="mdhglm"; version="1.8"; sha256="1myky8d2ilwdliqrzd2i5qvja82iz7w6qbigl7h4znpk8pdgrjb3"; depends=[boot Matrix mvtnorm]; }; mdir_logrank = derive2 { name="mdir.logrank"; version="0.0.4"; sha256="0bhsr005dq9v85sjm2g9xlpksxwzsmsk14g0q5v3hkjvm5wk6xmv"; depends=[MASS]; }; - mdmb = derive2 { name="mdmb"; version="1.5-8"; sha256="0m0fgvz2cmwxqpsrb8ir8vrmb9y99ddc24s9g08w68cakig6pd19"; depends=[CDM coda miceadds Rcpp RcppArmadillo sirt]; }; mdpeer = derive2 { name="mdpeer"; version="1.0.1"; sha256="1vsqhah8h47s8k687fwa352549mdz16mwk1g7rcmhx75c2k85w2q"; depends=[boot ggplot2 glmnet magic nlme nloptr psych reshape2 rootSolve]; }; mds = derive2 { name="mds"; version="0.3.2"; sha256="1r4cz49h1sp1kl1sjqapadhd49lpdnr48w9xbwgpfh2ghwxfcval"; depends=[lubridate parsedate]; }; - mdsOpt = derive2 { name="mdsOpt"; version="0.5-1"; sha256="01gcrlmcgi1phz4952bkbf2xzd2j06lq1d6cn3nf3jz9sy5xy7f8"; depends=[animation clusterSim plotrix smacof smds spdep symbolicDA]; }; mdscore = derive2 { name="mdscore"; version="0.1-3"; sha256="10cl5r6kd9chdik5v0q91x40xpw2cjvvyi220z4bvngpb0989x8j"; depends=[MASS]; }; mdsdt = derive2 { name="mdsdt"; version="1.2"; sha256="0nbzc54jac4wmfyrs821ycxh749cb1zfxcws0nbpk35rydqkc627"; depends=[ellipse mnormt polycor]; }; mdsr = derive2 { name="mdsr"; version="0.2.5"; sha256="0mw6kpd2p0yqkjjl1jy6bhc8dy2skxiq0k204y8kzr0l9rqk76zs"; depends=[babynames DBI dbplyr downloader dplyr fs ggplot2 htmlwidgets kableExtra RMySQL skimr stringr tibble webshot]; }; @@ -12385,7 +12103,7 @@ in with self; { mecor = derive2 { name="mecor"; version="1.0.0"; sha256="0jcqf6d7x16hs0mrnkawlkl9idd2g5zb6l6mqdavkdx43fhk38j4"; depends=[lme4 lmerTest numDeriv]; }; medExtractR = derive2 { name="medExtractR"; version="0.4"; sha256="0wm3phmyn3ja8snpmnmagk11c44k8jxhc6by9zcmn0cqzf78h2mk"; depends=[stringi stringr]; }; mederrRank = derive2 { name="mederrRank"; version="0.0.8"; sha256="1fvvik3bhjm6c0mhi2ma915986k2nj3lr2839k5hfrr7dg3lw3f4"; depends=[BB numDeriv]; }; - medfate = derive2 { name="medfate"; version="2.3.7"; sha256="1mxfvaamswm9zw1jbs9p94h0krrdw4xma4j8wa2w453pyikcpcxk"; depends=[ggplot2 meteoland Rcpp shiny]; }; + medfate = derive2 { name="medfate"; version="2.7.3"; sha256="1kc3xc3n8lsniajjzq7l90l04xnd9p1f0srmhw7fvyrby36jlk38"; depends=[ggplot2 meteoland Rcpp shiny]; }; medflex = derive2 { name="medflex"; version="0.6-7"; sha256="171vp0wmmmbz42xcwjy065vhvig49s4ac2hzawfww2mvpfj0g0fj"; depends=[boot car Matrix multcomp sandwich]; }; mediacloudr = derive2 { name="mediacloudr"; version="0.1.0"; sha256="1r11mpz44msla71lqw45r9s8z7rwvbnqi026l0ljx6crby183h0w"; depends=[httr jsonlite rvest xml2]; }; mediateP = derive2 { name="mediateP"; version="0.2.0"; sha256="0qmams2hdvhq7abfidblgdz44nh5ja3byn233q3k61hvz7asxmc7"; depends=[boot]; }; @@ -12403,17 +12121,17 @@ in with self; { mefa4 = derive2 { name="mefa4"; version="0.3-8"; sha256="09y8mhmcd82gz582lskvy0yx6vh6jjyxmh7i35041knqcjyp6lpc"; depends=[Matrix]; }; meifly = derive2 { name="meifly"; version="0.3"; sha256="1x3lhy7fmasss0rq60z5qp74ni32sahw62s8cnp2j431sp95pczc"; depends=[leaps MASS plyr]; }; mekko = derive2 { name="mekko"; version="0.1.0"; sha256="09y50k4r4mnx351a5zhkqg9s2xyl3d149dhmfy2z6hzm5yg2ajyi"; depends=[ggplot2]; }; - melt = derive2 { name="melt"; version="1.4.0"; sha256="0ffcdbrwk3008720iv589l01wgkzp49djv7vmj5bmpi96bdi3vy8"; depends=[Rcpp RcppEigen RcppProgress]; }; + melt = derive2 { name="melt"; version="1.5.1"; sha256="1r0drsraxyhkgnmn921sszw8m53yr7py678p9gpaln9wwcadmcrp"; depends=[Rcpp RcppEigen RcppProgress]; }; meltr = derive2 { name="meltr"; version="1.0.0"; sha256="0pcpgwk7if9f441z0vwh9g0ydhzkv3h4db433snkk5g4rfikx3ad"; depends=[cli cpp11 R6 rlang tibble]; }; meltt = derive2 { name="meltt"; version="0.4.2"; sha256="0pj4z5nlb3ngx50r25d80z275rcf571imapq83yg0djp5lwzml0c"; depends=[dplyr ggplot2 leaflet plyr Rcpp RcppArmadillo reticulate shiny shinyjs tibble tidyr]; }; - mem = derive2 { name="mem"; version="2.16"; sha256="16xm9hai1aqhrbpxln6az4qbwz3kk2izmq39nzpzjc3ardpq1ljr"; depends=[boot dplyr EnvStats ggplot2 mclust purrr RColorBrewer RcppRoll sm tidyr]; }; - memapp = derive2 { name="memapp"; version="2.14"; sha256="0w2lbypz0bc50s6yrvidz96wpz53cxpk5a9yhbq7rp8chr9r8cm3"; depends=[dplyr DT foreign formattable ggplot2 haven mem openxlsx plotly RColorBrewer readxl RODBC shiny shinyBS shinydashboard shinyjs shinythemes shinyWidgets stringi stringr tidyr]; }; + mem = derive2 { name="mem"; version="2.17"; sha256="0nlw0mf5dhp9x5ymc33a600i199c5g3qi80g5jqacp0m0q6s2b8n"; depends=[boot dplyr EnvStats ggplot2 mclust purrr RColorBrewer RcppRoll sm tidyr]; }; + memapp = derive2 { name="memapp"; version="2.15"; sha256="0nr53jyc85dry65hz3x3s8ai1iqzlz4aw97sh8f1vri48cc16xl7"; depends=[dplyr DT formattable ggplot2 mem plotly RColorBrewer shiny shinyBS shinydashboard shinyjs shinyWidgets stringi stringr tidyr]; }; meme = derive2 { name="meme"; version="0.2.3"; sha256="009gkl9zmj2s6wmd7rl0khf04m05zcbbjjds2w7krnbr8h0dqpqm"; depends=[ggplot2 gridGraphics magick showtext sysfonts]; }; memery = derive2 { name="memery"; version="0.5.6"; sha256="0rlq0pjl13wsc025z3ycd5m48lnlagw61fbn51x9npysrmii4rvh"; depends=[Cairo colourpicker cowplot ggplot2 jpeg magrittr png purrr shiny shinyBS shinycssloaders showtext sysfonts]; }; memgene = derive2 { name="memgene"; version="1.0.2"; sha256="1f1v651vab4b3bfxn8wp5p848h6vy7ylr52zirwhnhxj37fzhkq6"; depends=[ade4 gdistance raster sp vegan]; }; memify = derive2 { name="memify"; version="0.1.1"; sha256="1dnbaz57v50mg2kxn5y7cdfrsv1h046cwqh48mpabgh6vf018w4y"; depends=[]; }; memisc = derive2 { name="memisc"; version="0.99.30.7"; sha256="0j1y4dv38irz3117inz2d298rbi3lj2r68acaynfj6lj21nx292k"; depends=[data_table lattice MASS repr]; }; - memo = derive2 { name="memo"; version="1.0.1"; sha256="14nvqi1qsin45ksd0wp9cigjk1gghr4jijdqkaqh177dwa244r9j"; depends=[digest]; }; + memo = derive2 { name="memo"; version="1.0.2"; sha256="01mqhv8vyg241nfb3qcq32vgxakmg5slx4xj8k4ymafxbwffijnk"; depends=[digest]; }; memochange = derive2 { name="memochange"; version="1.1.1"; sha256="144134kpchb7ps8b2g7pyga5add0iqphzcwygf11aybmbzmp90x7"; depends=[forecast fracdiff longmemo LongMemoryTS sandwich strucchange urca]; }; memofunc = derive2 { name="memofunc"; version="1.0.2"; sha256="02y32mnwafqnsvs3vy4g8v0jmdvnx935dqavy3q1f2n8c76p0bk9"; depends=[digest magrittr uuid]; }; memoiR = derive2 { name="memoiR"; version="1.1-4"; sha256="03za09ka1w882wczdn9xnn5j0ahkz1i515wfh5wj1q9hqfqm40cv"; depends=[bookdown rmarkdown usethis]; }; @@ -12442,7 +12160,7 @@ in with self; { metaDigitise = derive2 { name="metaDigitise"; version="1.0.1"; sha256="1cwvb6b4a1pfixbknbjjylsmpkccgi163h0kbf7zfjaqjg2y9mzh"; depends=[magick purrr]; }; metaEnsembleR = derive2 { name="metaEnsembleR"; version="0.1.0"; sha256="1vxrzdm4j3h91h0fvps36a8xhs1b8cylw2cw2mhvg20lpcjjdsdv"; depends=[caret e1071 gbm ggplot2 gridExtra randomForest]; }; metaLik = derive2 { name="metaLik"; version="0.43.0"; sha256="1li40pgd9z00nrph9njwn6wysb1i9dkpqzcp6fzds6asvcxlqqfl"; depends=[]; }; - metaMA = derive2 { name="metaMA"; version="3.1.2"; sha256="1mjyz06q1kc8lhfixpym4ndpnisi1r849fj3da6riwfd6ab1v181"; depends=[limma SMVar]; }; + metaMA = derive2 { name="metaMA"; version="3.1.3"; sha256="13imp5d1ggw4qc7win4d2nvwvl92s9visb6bjm09h69lp18h631s"; depends=[limma SMVar]; }; metaMix = derive2 { name="metaMix"; version="0.3"; sha256="17qkwg9iz5v63ybyvqppbf044l0pi0ym5pw283174dlx8lfac60q"; depends=[data_table ggplot2 gtools Matrix Rmpi]; }; metaRMST = derive2 { name="metaRMST"; version="1.0.0"; sha256="1mq9j7iczjh7d3cps9g1bh0f8k388bdn8d5lkjs2s8y9fq1kxzmx"; depends=[meta mvmeta rstpm2 survival survRM2]; }; metaRNASeq = derive2 { name="metaRNASeq"; version="1.0.7"; sha256="1c9qxac7439wxnmr1jah37pmski5wyap1vd4nb8gvq4indbdiaz2"; depends=[]; }; @@ -12452,6 +12170,7 @@ in with self; { metaboData = derive2 { name="metaboData"; version="0.6.3"; sha256="0a8jz7q0a5dri5p2qyw0ah0j4w0xjyfj6gkh2gcsazac1d5fl02i"; depends=[dplyr fs magrittr piggyback purrr readr rlang stringr tibble yaml]; }; metabolic = derive2 { name="metabolic"; version="0.1.0"; sha256="1bk8d0sxlgc17d7x02zmx23fdqz39c9zpin16bzhcj602kjcq0y8"; depends=[cli dplyr forcats ggfittext ggimage ggplot2 glue magrittr meta patchwork purrr rmarkdown scales stringr tibble tidyr usethis]; }; metabolighteR = derive2 { name="metabolighteR"; version="0.1.3"; sha256="0ip7cy40jndcwp8yc42pjzklv35dkxjd3pdlpwk0r0jngp7nbjim"; depends=[crayon dplyr httr magrittr purrr]; }; + metabolomicsR = derive2 { name="metabolomicsR"; version="1.0.0"; sha256="0b12nddczh8i6hnv679pa521yps26n98j2cnai8s67xiw5ir0y5v"; depends=[data_table ggplot2 plotROC]; }; metacart = derive2 { name="metacart"; version="2.0-3"; sha256="1wim72fvhx6cyc16c9gl8cwzbhlpzilk7q8gi4jnzzazqmc1kb5n"; depends=[ggplot2 gridExtra Rcpp rpart]; }; metacoder = derive2 { name="metacoder"; version="0.3.5"; sha256="0d0ihglsal9cx03jjq472x2xlqdflgxhzkr0vwvjpq0rqvq5syva"; depends=[ape cowplot crayon dplyr GA ggfittext ggplot2 igraph lazyeval magrittr R6 Rcpp RCurl readr rlang seqinr stringr taxize tibble vegan]; }; metacom = derive2 { name="metacom"; version="1.5.3"; sha256="0c0gzn28cl2sl52wx2n36jm9c18d9s3yqjyx88kgbmd9069z1nvk"; depends=[vegan]; }; @@ -12459,15 +12178,15 @@ in with self; { metacor = derive2 { name="metacor"; version="1.0-2.1"; sha256="0y3z7jbhw5c2dbn9fx9wlw1311irjc2xvnm5hnaixbbj53qz24n0"; depends=[gsl rmeta]; }; metacore = derive2 { name="metacore"; version="0.0.4"; sha256="0yrhvzpaspskmmkl5hbifj2rqf1ilwx7paill4yggi1j84kmgvai"; depends=[dplyr magrittr purrr R6 readxl rlang stringr tibble tidyr tidyselect XML]; }; metadat = derive2 { name="metadat"; version="1.2-0"; sha256="1f7mb3pw5d0akr09jjva06ay223izhpzbr21bapnw99x1kiybk7h"; depends=[mathjaxr]; }; - metadynminer = derive2 { name="metadynminer"; version="0.1.6"; sha256="0zg08lwnimnmfwac0d5kg8yhsl88gmn029dra18phy1jzkfnsx34"; depends=[Rcpp]; }; - metadynminer3d = derive2 { name="metadynminer3d"; version="0.0.1"; sha256="0riqr2hhk4h0rm7m4njb2dd2f24jff7lzf9chh83sq4q3wldgpz5"; depends=[metadynminer misc3d Rcpp rgl]; }; - metafolio = derive2 { name="metafolio"; version="0.1.0"; sha256="18s78lljwnn3j0l3mqc0svszcb3c8yzyzlpnimndbiq9yxagxnnf"; depends=[colorspace MASS plyr Rcpp RcppArmadillo]; }; - metafor = derive2 { name="metafor"; version="3.0-2"; sha256="12hk6k2awbf022bbkh0zqcmm8fi534yzgv83c5rxl9djjx8l7pq2"; depends=[mathjaxr Matrix nlme pbapply]; }; + metadynminer = derive2 { name="metadynminer"; version="0.1.7"; sha256="0ch86qqs3872d28c8wrs24ryg2xahqsmndmzjc3z6qznkrq1adzh"; depends=[Rcpp]; }; + metadynminer3d = derive2 { name="metadynminer3d"; version="0.0.2"; sha256="1y1csfp57qrv394hj96yr5v3brxw7v0a07k2pg7ypw08gshvgqjm"; depends=[metadynminer misc3d Rcpp rgl]; }; + metafolio = derive2 { name="metafolio"; version="0.1.1"; sha256="1bnlmh1pwwg5hjmsqnswn4d4phjdpsiyg7pwl8nbxyx0g2hw3p5v"; depends=[colorspace MASS plyr Rcpp RcppArmadillo]; }; + metafor = derive2 { name="metafor"; version="3.4-0"; sha256="0vn244xfgq7yxwl6ykvadb305z360ssc9vzva7kbcdfiqhhvrqcj"; depends=[mathjaxr Matrix metadat nlme pbapply]; }; metaforest = derive2 { name="metaforest"; version="0.1.3"; sha256="1q6m60cd7gl7y0gdjd10ky25hwv5jc4x5g5sr5w61xc3j2hnw8in"; depends=[data_table ggplot2 gtable metafor ranger]; }; metafuse = derive2 { name="metafuse"; version="2.0-1"; sha256="1zdw22f5kzvy2xr3c2csy873hcags60as567brc2sw17d0apfy8j"; depends=[evd glmnet MASS Matrix]; }; metagam = derive2 { name="metagam"; version="0.3.1"; sha256="05rijhhqwlfd563fx4r4kbqnr9hgbxn1qh05h9ljny0js15q06b9"; depends=[ggplot2 metafor mgcv rlang]; }; metagear = derive2 { name="metagear"; version="0.7"; sha256="1gwfk6v591xxsccbi287b90vnf5c1jfz72jxcxy9iswp0jpjflaq"; depends=[MASS Matrix metafor stringr]; }; - metaggR = derive2 { name="metaggR"; version="0.2.0"; sha256="00w40ip630p42h9v87zq08xrggpwkvbqmn4m0963s7x7yjscwp9d"; depends=[MASS]; }; + metaggR = derive2 { name="metaggR"; version="0.3.0"; sha256="11kqic87xrm9d046kgc0l0wfip2gimnvsbm559dbyjbrv2f27bpb"; depends=[MASS]; }; metaheuristicOpt = derive2 { name="metaheuristicOpt"; version="2.0.0"; sha256="0ra4hl9l1jlzymj218m2i6xrxfacyx4aaln5pk7q4di2ks0nq11m"; depends=[]; }; metajam = derive2 { name="metajam"; version="0.2.3"; sha256="0ryzsnwfhapsyz40ckjj6gn2chf37m62z3l7xv703878bghpdqwc"; depends=[dataone dplyr EML emld lubridate purrr readr rlang stringr tibble tidyr]; }; metamedian = derive2 { name="metamedian"; version="0.1.5"; sha256="1v2nha2qc9vs2s9nfvbia033ppprkwxj5fadlrpy20fj2lr8z7z6"; depends=[estmeansd Hmisc metafor]; }; @@ -12479,8 +12198,7 @@ in with self; { metap = derive2 { name="metap"; version="1.8"; sha256="0asmypxfxly4xmcjf3yzid5zqlzg88z0brij2splfk4avsl035gf"; depends=[lattice mathjaxr mutoss qqconf Rdpack TFisher]; }; metapack = derive2 { name="metapack"; version="0.1.5"; sha256="112mhfg01hci09qj9l2l3xww3za20kd1z6jshj4893mlqpmvl177"; depends=[BH Formula ggplot2 gridExtra Rcpp RcppArmadillo RcppProgress]; }; metaplot = derive2 { name="metaplot"; version="0.8.3"; sha256="1zw8bq2fy9m15dfc92ag0dz2k9dqrf5jbvfaycizcgsgaqd79s1c"; depends=[dplyr encode ggplot2 gridExtra gtable lattice magrittr rlang scales tidyr]; }; - metaplotr = derive2 { name="metaplotr"; version="0.0.3"; sha256="01iala6cxsxv30fnlh80md5mpy3ksd2piw90zcls8f68g1c6v1jy"; depends=[ggplot2 gridExtra]; }; - metaplus = derive2 { name="metaplus"; version="1.0-2"; sha256="1fgfw9d93agcb9bbwaxzgrgpnlq146khc62vk8fmlzk3idxjpcp8"; depends=[bbmle boot doParallel doRNG fastGHQuad foreach lme4 MASS metafor numDeriv Rfast]; }; + metaplus = derive2 { name="metaplus"; version="1.0-4"; sha256="1lrlw5h3fgcrp0cdawxala36m8mpljbmp20fhf4sc0qj51h2ccs4"; depends=[bbmle boot doParallel doRNG fastGHQuad foreach lme4 MASS metafor numDeriv Rfast]; }; metapost = derive2 { name="metapost"; version="1.0-6"; sha256="098f7sifg814mc4sb1nb4d6dlr1xms5hwyp08ksxg0i4ayf9jf3c"; depends=[gridBezier]; }; metapower = derive2 { name="metapower"; version="0.2.2"; sha256="1r6mmdxxi83isjjyfzblwpzfgqdmfhbqmq49zm2b4jd0zvc0lfcx"; depends=[cowplot dplyr ggplot2 knitr magrittr rlang testthat tidyr]; }; metaprotr = derive2 { name="metaprotr"; version="1.2.2"; sha256="1iz5aqd8ha0h19sa58s7xd4h26lbqp68dxy93pxnx9bj3bv615b3"; depends=[ade4 dendextend dplyr ggforce ggrepel reshape2 stringr tidyverse]; }; @@ -12488,29 +12206,30 @@ in with self; { metasens = derive2 { name="metasens"; version="1.0-1"; sha256="10ii6q1f9064j3jm9rm1ffm2mzpjlqnqhhvpp27s27i6r9jbma3w"; depends=[meta]; }; metatest = derive2 { name="metatest"; version="1.0-5"; sha256="1h3dcs1m7606b3a41yw2lak3lrqmsbpnx67qv24wvq003apz1sfd"; depends=[]; }; metathis = derive2 { name="metathis"; version="1.1.1"; sha256="0vac4sjlbz1cpdx0yc6q52mj174xay5j81cl5f4z2q9in0jy8f8b"; depends=[htmltools knitr magrittr purrr]; }; - metaumbrella = derive2 { name="metaumbrella"; version="1.0.2"; sha256="16v8q97f5a6dcwwii3hfkw7skbifihkv2sr2rbbyxb23fz2ypzpd"; depends=[meta powerSurvEpi readxl withr writexl xtable]; }; + metatools = derive2 { name="metatools"; version="0.1.1"; sha256="0z56w1j7d96vd4jv4gx1hkpcn6h9hph40gb811w0v2kggh52j7xc"; depends=[dplyr metacore purrr rlang stringr tidyr]; }; + metaumbrella = derive2 { name="metaumbrella"; version="1.0.3"; sha256="1idnvixly5sqqxj1rvxxpmg1wh8mrfli6kbi9s4gjiynhd0v2zc9"; depends=[meta powerSurvEpi readxl withr writexl xtable]; }; metavcov = derive2 { name="metavcov"; version="2.1.2"; sha256="1jf4xig6lshf5kda4cj7w72121jp8bq52f4752bl8sxgnfqgfkr5"; depends=[ggplot2]; }; metaviz = derive2 { name="metaviz"; version="0.3.1"; sha256="0jvv49rw66v7saj2y1q88rp6fyzq7473af5d3k77ymvjbpqyrbyz"; depends=[dplyr ggplot2 ggpubr gridExtra metafor nullabor RColorBrewer]; }; metawho = derive2 { name="metawho"; version="0.2.0"; sha256="1mflkrlnb1wk9vbbj621cy64s78q677d8fcnsi1ybh49k7sqmw20"; depends=[dplyr forestmodel magrittr metafor purrr rlang]; }; meteR = derive2 { name="meteR"; version="1.2"; sha256="02637d3dnfq0jv9d74y99x7ms89y3jcmkpazc44g44sa7jx4i510"; depends=[distr nleqslv]; }; meteo = derive2 { name="meteo"; version="0.1-5"; sha256="0n37plka9vsxwd03lca3h6m8dcz3f1bi46jn3bz7vyilnkq9hcdk"; depends=[gstat plyr raster rgdal snowfall sp spacetime]; }; meteoForecast = derive2 { name="meteoForecast"; version="0.54"; sha256="046c0z66hsyfrnksdq40xv3kf2di0ywv5wfb9s7b7999s694ak18"; depends=[ncdf4 raster sp XML zoo]; }; - meteogRam = derive2 { name="meteogRam"; version="1.0"; sha256="167gyxjnl4dyfqs3znv8sdpkvpqdxzdqi1g730s30gycrm9snap9"; depends=[ggplot2 RadioSonde]; }; meteoland = derive2 { name="meteoland"; version="1.0.2"; sha256="1z8ndbvd5ah4w9c2db0wq9chy2dwa81wgcagfnv6xj72yh3f0k86"; depends=[meteospain ncdf4 Rcpp rgdal sf sp spdep units]; }; meteor = derive2 { name="meteor"; version="0.3-4"; sha256="01009d9wpxybig4n82m48hqqg1k4x4shcjxfy8y0kk7cgfdb4naw"; depends=[Rcpp]; }; meteorits = derive2 { name="meteorits"; version="0.1.1"; sha256="1vk8pbhfc5mbkbpw7ml81gx9i8187xp3vx36pbyyhjbrpy6gqabx"; depends=[MASS pracma Rcpp RcppArmadillo]; }; meteospain = derive2 { name="meteospain"; version="0.0.3"; sha256="0qqlfli9k4472ajx57xkf9laym0znl43qy8xzdq8xnq5alv0yrsw"; depends=[assertthat cachem crayon dplyr glue httr jsonlite lubridate magrittr memoise purrr rlang sf stringr tidyr units vctrs xml2]; }; methcon5 = derive2 { name="methcon5"; version="0.1.0"; sha256="08xsi6j65izxqcrlh37f2d7m3pwna1v6zvdv96mqylsjqgqmbk5x"; depends=[dplyr magrittr purrr rlang]; }; metools = derive2 { name="metools"; version="1.0.0"; sha256="05l49ifx2nnlbdxh2qhdb0islf95fc67720rm5in7mrlida4khnq"; depends=[ggplot2 lubridate scales stringr tibble tidyr]; }; + metrica = derive2 { name="metrica"; version="1.2.3"; sha256="1l2wi7bnp5q8jbbw1szjyd3v8493zzpsfvfq7ijk5g2s1s0kqpgx"; depends=[DBI dplyr ggplot2 ggpp rlang RSQLite tidyr viridis]; }; metricsgraphics = derive2 { name="metricsgraphics"; version="0.9.0"; sha256="1zbx82b34y0rr4w7rzvyc1nzk95w6cdkg0j1kkshbmkvplq6v9i4"; depends=[htmltools htmlwidgets magrittr]; }; metrix = derive2 { name="metrix"; version="1.0.0"; sha256="121g2vflwrrix1jjx26g4jxd6chdw6wghyp2adyvky45zckc9zi7"; depends=[Matrix stringr vegan]; }; metro = derive2 { name="metro"; version="0.9.1"; sha256="0agmwvbwhpn5nzzkyz20pspbv6i80i636fhf9sqydgl1fskknrf2"; depends=[geodist hms httr jsonlite tibble]; }; metropolis = derive2 { name="metropolis"; version="0.1.8"; sha256="031fcy0v13bvy7gg26988fvpqdsfndx2rynkhb1jvirnrf0fngy4"; depends=[coda]; }; mets = derive2 { name="mets"; version="1.2.9"; sha256="1daah4wkn428gdlah5f96jyjs3z9c3sz8h7g9lil8p3i9q3crb2z"; depends=[lava mvtnorm numDeriv Rcpp RcppArmadillo survival timereg]; }; metsyn = derive2 { name="metsyn"; version="0.1.2"; sha256="0iwp0nz07yd33qd93fjblmvik1l1xkv6rkccn3054zs2bkrzjq4f"; depends=[foreach readr stringr tibble]; }; - mev = derive2 { name="mev"; version="1.13.1"; sha256="1zbr5f8w56c9z0lp4ak47fxnnfrdm74liqcjvij0n4ajqs6glaak"; depends=[alabama boot evd nleqslv nloptr Rcpp RcppArmadillo TruncatedNormal]; }; - mewAvg = derive2 { name="mewAvg"; version="0.3.0"; sha256="16gc78ccjffp9qgc7rs622jql54ij83ygvph3hz19wpk22m96glm"; depends=[]; }; - mexhaz = derive2 { name="mexhaz"; version="2.2"; sha256="0fyb2sh635lc8wp80jpqiigzq7jbj12j7ynmn2nlls0jpsyrmpxn"; depends=[lamW MASS numDeriv statmod survival]; }; + mev = derive2 { name="mev"; version="1.14"; sha256="0pxjvvmrhjrdcznknncyhjghscajkw0q0y4r3ai22nkx70gln6bv"; depends=[alabama evd nleqslv nloptr Rcpp RcppArmadillo]; }; + mewAvg = derive2 { name="mewAvg"; version="0.3.1"; sha256="1pnjzfq4rdjjlqp1mxxlpkhkfgq1nym8pgaqrvpm76zw4xnx7p7m"; depends=[]; }; + mexhaz = derive2 { name="mexhaz"; version="2.3"; sha256="14zfk9wnb062zvqj1szkas02s5pvw0i7gc618x5dwddffvl6kpfi"; depends=[lamW MASS numDeriv statmod survival]; }; mexicolors = derive2 { name="mexicolors"; version="0.2.0"; sha256="0vbhwaq19hqd63qjybssgqxkawjr6vnar6k0nrb583hh1q9hjyg2"; depends=[]; }; mfGARCH = derive2 { name="mfGARCH"; version="0.2.1"; sha256="1pcabijwhdxhdlrdjvi2zl8la939igsdy3j1yv0ic8wvkpw1sh4x"; depends=[maxLik numDeriv Rcpp zoo]; }; mfaces = derive2 { name="mfaces"; version="0.1-3"; sha256="0pqmsflph2iplr0jlwpgbfgg523v0nw41gvjb88q1d993pyfhfdl"; depends=[face Matrix matrixcalc mgcv]; }; @@ -12527,10 +12246,9 @@ in with self; { mglasso = derive2 { name="mglasso"; version="0.1.1"; sha256="0h5npy9innq8dxyp1aq0agffrp29zrzfrcs8bzy43a60bhsil55l"; depends=[corpcor gridExtra Matrix R_utils reticulate]; }; mglmn = derive2 { name="mglmn"; version="0.1.0"; sha256="1g642hhs28q6x34xgrfrmmsb2jsn9zy4jxad0x5ai3px48zzdb4r"; depends=[mvabund snowfall]; }; mgm = derive2 { name="mgm"; version="1.2-12"; sha256="0p5l1mcgz47rri800i78q7f89s2ll5w5kqmj1lkd4i93fj4bh585"; depends=[glmnet gtools Hmisc qgraph stringr]; }; - mgpd = derive2 { name="mgpd"; version="1.99"; sha256="0cxpgza9i0hjm5w1i5crzlgh740v143120zwjn95cav8pk8n2wyb"; depends=[corpcor evd fields numDeriv]; }; mgss = derive2 { name="mgss"; version="1.2"; sha256="0czzr5hc9sr8yc362q9xag3vphwk1gfahczpya2mh1l6fsa74fbn"; depends=[combinat Matrix Rcpp statmod]; }; mgsub = derive2 { name="mgsub"; version="1.7.3"; sha256="1mci6x65h94qiz9cwikx2inbrwkykv43zbs8abfbx416zrh2bbn9"; depends=[]; }; - mgwrsar = derive2 { name="mgwrsar"; version="0.1-1"; sha256="03l5k1cb6r657034j84nw28lziij3lwccwc8lzlchfqbq766z4il"; depends=[doParallel foreach htmltools leaflet Matrix nabor Rcpp RcppEigen sp spgwr]; }; + mgwrsar = derive2 { name="mgwrsar"; version="1.0"; sha256="1bmwp5fp5gcgalyyh0cjv4gvngl2lsv38vniicgqgw78gqi1xlhv"; depends=[doParallel foreach ggplot2 htmltools knitr leaflet mapview Matrix microbenchmark nabor qlcMatrix Rcpp RcppEigen rlang sf sp spgwr]; }; mhazard = derive2 { name="mhazard"; version="0.1.2"; sha256="0axapk7rw8vhgmkkr4q9avmlmwi1cdyy0q70447hdp6hx9xg1fd6"; depends=[boot plot3D Rcpp RcppArmadillo rootSolve survival]; }; mhcnuggetsr = derive2 { name="mhcnuggetsr"; version="1.1"; sha256="0fq0niigf4lb6jqcy0w4mkfy65pxrw4brf3pg2nvmgnv3c91lgsb"; depends=[rappdirs reticulate stringr tibble]; }; mhsmm = derive2 { name="mhsmm"; version="0.4.16"; sha256="009dj0zkj1zry7jr9hf4cknb686z50a2l967if64xm0dvjmp7dgs"; depends=[mvtnorm]; }; @@ -12541,7 +12259,6 @@ in with self; { miCoPTCM = derive2 { name="miCoPTCM"; version="1.1"; sha256="0bmb06rb53fq8ylcvz693akmz7nkjj50c6ypxsjbfp4crllpi5v9"; depends=[distr MASS nleqslv survival]; }; miLineage = derive2 { name="miLineage"; version="2.1"; sha256="0660vk44ywmj0q2cw7pa2z1r039ncw693dnz7zlgc0ipwak3b0ry"; depends=[data_table geepack MASS]; }; miRNAss = derive2 { name="miRNAss"; version="1.5"; sha256="0j4yvd0j7r98m2msllszlzkzrx67a2z4xpx00zpq90hbr5jykxc4"; depends=[CORElearn Matrix Rcpp RSpectra]; }; - miRada = derive2 { name="miRada"; version="1.13.8-8"; sha256="1m6rm65pv4r16r0s5ih69nr3v2rnpsvpdpk07pi7k4f7v9wck71v"; depends=[]; }; miRecSurv = derive2 { name="miRecSurv"; version="1.0.2"; sha256="185bkqikkq0maagzwy4y3lxzq8vy1bjz7cz4dhk3v9818dr3fx3g"; depends=[COMPoissonReg matrixStats stringi survival]; }; miRetrieve = derive2 { name="miRetrieve"; version="1.3.4"; sha256="0y9ycvqyxax4qdn4inwl8jnv77fvhs2i0b4v8nmrcvk1kvb1v8jw"; depends=[dplyr forcats ggplot2 magrittr openxlsx plotly purrr readr readxl rlang scales stringr textclean tidyr tidytext topicmodels wordcloud xml2 zoo]; }; miRtest = derive2 { name="miRtest"; version="1.8"; sha256="0i66s1sz7vf8p8ihfrxmag7wbkw8mlkldcp1w2figlzyhs74c85p"; depends=[corpcor GlobalAncova globaltest limma MASS RepeatedHighDim]; }; @@ -12569,10 +12286,10 @@ in with self; { microclass = derive2 { name="microclass"; version="1.2"; sha256="0q6mn1hbi6nk29x2x5a1wcdqp06mjggbrpglk5i8pp4gkqlzhl8q"; depends=[dplyr microcontax microseq Rcpp RcppEigen RcppParallel rlang stringr tibble]; }; microcontax = derive2 { name="microcontax"; version="1.2"; sha256="004g979hyg0asbah7hxr445fidil4ibw1b8pqpjdbgmpm1qgvw7y"; depends=[microseq]; }; microdemic = derive2 { name="microdemic"; version="0.6.0"; sha256="1w4zh0vagnar95l5b8cgmcvp8q7vk2iba5g8d8g2ywynqiqcx5fc"; depends=[crul data_table httpcode jsonlite tibble]; }; - microeco = derive2 { name="microeco"; version="0.7.1"; sha256="1z3j6q855ms5sq7f732m7b3xgxrag00n5msp88i3dvy0wpv9cbga"; depends=[ape data_table dplyr ggplot2 magrittr R6 RColorBrewer reshape2 rlang scales tibble vegan]; }; + microeco = derive2 { name="microeco"; version="0.8.0"; sha256="1giv1ws4pd2jjg1mzbxqzf2ffbph3zg0mhykpbwvlq4wk2cmdsf7"; depends=[ape data_table dplyr ggplot2 magrittr R6 RColorBrewer reshape2 rlang scales tibble vegan]; }; microhaplot = derive2 { name="microhaplot"; version="1.0.1"; sha256="0g15g7d19yz11nn2g0h8h2m8k1cvmpryz72pnalgv5yi58md5l5i"; depends=[dplyr DT ggiraph ggplot2 gtools magrittr scales shiny shinyBS shinyWidgets tidyr]; }; micromap = derive2 { name="micromap"; version="1.9.5"; sha256="18y8m63k9l4dir8w1qbbi1g86506yajvi6qs0j1588575lak1l62"; depends=[ggplot2 maptools RColorBrewer rgdal sf sp]; }; - micromapST = derive2 { name="micromapST"; version="1.1.1"; sha256="15ch132x3wnpf7rmy25nah7iyfxfk90p7lvavqjhrnavhjsfxbxx"; depends=[labeling RColorBrewer stringr]; }; + micromapST = derive2 { name="micromapST"; version="1.1.3"; sha256="1hnbr1226lf982sksjs24q5pvn6zbkq8g8ahkybsirg946sswy95"; depends=[labeling RColorBrewer stringr]; }; micropan = derive2 { name="micropan"; version="2.1"; sha256="16zs6sqi2c5lwzhd5gbyddp8q4gx5r5sg0pbpk7924i8x4hh081h"; depends=[dplyr igraph microseq rlang stringr tibble]; }; microplot = derive2 { name="microplot"; version="1.0-45"; sha256="0qprvn5zv9ai30lhd8qykffc5f8va886kc5qka34940lin63v389"; depends=[cowplot flextable ggplot2 HH Hmisc htmltools lattice officer]; }; microsamplingDesign = derive2 { name="microsamplingDesign"; version="1.0.8"; sha256="0swaqvzqbmlk9j2gr8z7x7xrkr38xndprg9k66whzcigxfh8nhiz"; depends=[abind deSolve devtools ggplot2 gridExtra gtools knitr MASS matrixcalc matrixStats plyr Rcpp RcppArmadillo readr reshape2 shiny stringr]; }; @@ -12582,13 +12299,13 @@ in with self; { microsynth = derive2 { name="microsynth"; version="2.0.31"; sha256="0wmrp9igylzp4qbvdr13r2rxfkcq9xwg8gw29j1g6kcqyq4aflds"; depends=[boot kernlab LowRankQP nleqslv pracma survey]; }; midas = derive2 { name="midas"; version="1.0.1"; sha256="1alqxk23651jnkg0xn4rpvk71z5rhvx3y0wjrgkw2qw95s7jjn72"; depends=[shiny xml2]; }; midas2 = derive2 { name="midas2"; version="0.1.0"; sha256="0k670ppbw12s4wgliiqgc5fr0sajr5axlkwa5i54hrappkh1vlb4"; depends=[coda MCMCpack R2jags]; }; - midasml = derive2 { name="midasml"; version="0.1.9-1"; sha256="15r6sdq788x3gj8n8b2ykhrp8habx8rjhsiy3phlp98vm7m58b2z"; depends=[doParallel doRNG foreach lubridate Matrix mcGlobaloptim]; }; + midasml = derive2 { name="midasml"; version="0.1.10"; sha256="0jhrifvqcis2lj59vybgkzgmdmxwfqmsbxijwcz8hsprshr69xl9"; depends=[doParallel doRNG foreach lubridate Matrix randtoolbox snow]; }; midasr = derive2 { name="midasr"; version="0.8"; sha256="0mzyxf8q2wmbsiczkhhgigy7jmi8zr4w4a83f97va35vfhxi217k"; depends=[forecast Formula MASS Matrix numDeriv optimx quantreg sandwich texreg zoo]; }; midastouch = derive2 { name="midastouch"; version="1.3"; sha256="1pjzcf0hjfhr5p0la8pz1njw7bhfrcrzpqfsdqk2z5c6dbh4awzq"; depends=[]; }; midrangeMCP = derive2 { name="midrangeMCP"; version="3.1.1"; sha256="1yfwyglyxxk4i914m8n148cjydlcg7r16zl8acb1w8h963svirk9"; depends=[SMR writexl xtable]; }; mifa = derive2 { name="mifa"; version="0.2.0"; sha256="1rj3ba746f8759gird0vpvyb4fl0z2ihccpiv3qkr3sc64wgplln"; depends=[checkmate dplyr mice]; }; migest = derive2 { name="migest"; version="2.0.2"; sha256="14gfslx3fpqw8170qkwf1155q3936m8kmwdqc8vqyli5nafbjf9w"; depends=[circlize dplyr forcats magrittr matrixStats migration_indices purrr stringr tibble tidyr]; }; - migraph = derive2 { name="migraph"; version="0.9.2"; sha256="1829lya4hl3fnfs69vzqxnshlqazhl8ri2s9w5aq9hd9ly7rbq28"; depends=[concaveman dplyr furrr future generics ggdendro ggforce ggplot2 ggraph igraph network oaqc patchwork purrr rlang sna stringr tibble tidygraph tidyr]; }; + migraph = derive2 { name="migraph"; version="0.9.3"; sha256="02zryyqxpndyk6h358lysbka2vjvsf6df6z4jpg7a2qlllw0djrr"; depends=[concaveman dplyr furrr future generics ggdendro ggforce ggplot2 ggraph igraph network oaqc patchwork purrr rlang sna stringr tibble tidygraph tidyr]; }; migrate = derive2 { name="migrate"; version="0.4.0"; sha256="0yf0c7gcn2q8sx0havhqaxk6z69bagfd58drpbqkkpsp62bnq875"; depends=[dplyr magrittr rlang tibble tidyr]; }; migration_indices = derive2 { name="migration.indices"; version="0.3.0"; sha256="0h0yjcj70wzpgrv3wl1f2h2wangh1klsllq0i0935plgzw736mwd"; depends=[calibrate]; }; migui = derive2 { name="migui"; version="1.1"; sha256="1qchjsc7ff2b6s9w6ncj9knjv6pyp90jd4jxljn2rr1ix1gc45za"; depends=[arm gWidgets2 mi]; }; @@ -12601,7 +12318,7 @@ in with self; { mimsy = derive2 { name="mimsy"; version="0.6.2"; sha256="01dy1fryrgq07jdfnxcnks97h0gq632dvqk7hnfs0f5fnx0k0vvf"; depends=[dplyr lubridate magrittr openxlsx]; }; minMSE = derive2 { name="minMSE"; version="0.5.1"; sha256="1fj6njqdc6zn73n2q60x01znwn6xlprjldwy5c13d8rd1n5shccm"; depends=[MASS Rcpp]; }; minSNPs = derive2 { name="minSNPs"; version="0.0.2"; sha256="1wnhyqvhv17bghzy6ci0imxvnnga392h92kiqkhklbrg2aw1wipq"; depends=[BiocParallel]; }; - mind = derive2 { name="mind"; version="0.1.6"; sha256="1rcifsjsh2snas3phkr19gvydknkgx0panh8wdb82q8p3v0pmyv5"; depends=[data_table dplyr JWileymisc MASS Matrix qdap tm]; }; + mind = derive2 { name="mind"; version="0.1.6-1"; sha256="1rm4slapzhvsj7nqqzfnchn1i21xz0afk956kskl5qipcq37il1j"; depends=[data_table dplyr JWileymisc MASS Matrix tm]; }; mindr = derive2 { name="mindr"; version="1.3.2"; sha256="0nv3wripimpbi8zf1h8fkj80ibrzava36kcai9f1gl8frincafr9"; depends=[htmlwidgets knitr]; }; mineCitrus = derive2 { name="mineCitrus"; version="1.0.0"; sha256="031nfhrsc5rlqls3vyrk18lx0pd4ssdk96cmfr4ifaciz0rgv8h2"; depends=[ggplot2]; }; minerva = derive2 { name="minerva"; version="1.5.10"; sha256="03srkii3rmx40lyr050bnrxil6w0hfv5pr64k339m66ciwyka9ig"; depends=[Rcpp RcppArmadillo]; }; @@ -12615,14 +12332,13 @@ in with self; { minimax = derive2 { name="minimax"; version="1.1"; sha256="0108gwdaaag219f2azzmd365d866bvlxvg247xin58f7sfdy038w"; depends=[]; }; minimaxdesign = derive2 { name="minimaxdesign"; version="0.1.5"; sha256="0mraklk79w2r4rx450pkajgh5s9pk7wa3gcbd98xkd03ns11s9v8"; depends=[conf_design DiceDesign DoE_base doParallel doSNOW foreach FrF2 geometry gmp gtools jpeg MaxPro nloptr pdist randtoolbox Rcpp RcppArmadillo]; }; minimist = derive2 { name="minimist"; version="0.1"; sha256="007y829d766b1v6wkrhk7pkg99r38bvmhc8bwvs8rs13dr7444ln"; depends=[V8]; }; - minpack_lm = derive2 { name="minpack.lm"; version="1.2-1"; sha256="18ym2pdql5vzngc7q5gn66d153hrfrnd8ilv8yh6vd7j7sx7vjql"; depends=[]; }; + minpack_lm = derive2 { name="minpack.lm"; version="1.2-2"; sha256="11yz6hk2r33571d16kq01cb1x6sgdzi6jmksqlrm8mr84l95c2f7"; depends=[]; }; minqa = derive2 { name="minqa"; version="1.2.4"; sha256="036drja6xz7awja9iwb76x91415p26fb0jmg7y7v0p65m6j978fg"; depends=[Rcpp]; }; minque = derive2 { name="minque"; version="2.0.0"; sha256="0pczdg22i3if048i64chzcpnv3ay8p0anmhwjmzm29577z0jgms8"; depends=[]; }; - minval = derive2 { name="minval"; version="0.8-1"; sha256="11sr69hmqnh5g2zbfajy3wqc57759basky1w72dnrd38rq50llxs"; depends=[]; }; - minxent = derive2 { name="minxent"; version="0.01"; sha256="1a0kak4ff1mnpvc9arr3sihp4adialnxxyaacdgmwpw61wgcir7h"; depends=[]; }; + minval = derive2 { name="minval"; version="0.8-2"; sha256="06anbb90c8wg0374ykmb6chcwrcdyi903jkbrmrv3kgx511l699z"; depends=[]; }; mipfp = derive2 { name="mipfp"; version="3.2.1"; sha256="1gxazpg81vj5dywpb6jb29188jw28qil6pfygawa7znnjn3k5ca6"; depends=[cmm numDeriv Rsolnp]; }; mipplot = derive2 { name="mipplot"; version="0.3.1"; sha256="126arvxq6gmaiwk3n3p0slnb1mhs3qf993m4lx95nlmnv612ag66"; depends=[data_table dplyr ggplot2 readr readxl reshape reshape2 rlang shiny shiny_i18n shinyalert shinyWidgets showtext showtextdb stringr tidyr]; }; - mirai = derive2 { name="mirai"; version="0.2.0"; sha256="0an1i3gymgiyhhfkzfhxnmdib2pna8wgjsgxvsp3a1lv0lhs7k58"; depends=[nanonext]; }; + mirai = derive2 { name="mirai"; version="0.4.1"; sha256="19f808jyvpcrjsl9i35vpg0xig940l0c3sgkb1nfvfrhx436mw12"; depends=[nanonext]; }; mirt = derive2 { name="mirt"; version="1.36.1"; sha256="1fw5w6yv70nfb38w3059fcclgmsddmvx99w4baca6jarxgsa05aj"; depends=[dcurver Deriv GPArotation gridExtra lattice Matrix mgcv pbapply Rcpp RcppArmadillo vegan]; }; mirtCAT = derive2 { name="mirtCAT"; version="1.12"; sha256="0pi6xwvia0njkmdpvr8bbp7ha05rcazw3qbva9gf518ffwvda9gy"; depends=[lattice lpSolve markdown mirt pbapply Rcpp RcppArmadillo shiny]; }; mirtjml = derive2 { name="mirtjml"; version="1.4.0"; sha256="1zvm8acywpzi87lz0hpxmr8c9kyqkbx0490q3vlwxd90ffcdp9ml"; depends=[GPArotation Rcpp RcppArmadillo]; }; @@ -12644,23 +12360,23 @@ in with self; { missCompare = derive2 { name="missCompare"; version="1.0.3"; sha256="03j69xw54d076znx19dplw4xznvgky90hxh3wgypg0g5pjg63y53"; depends=[Amelia data_table dplyr ggdendro ggplot2 Hmisc ltm magrittr MASS Matrix mi mice missForest missMDA pcaMethods plyr rlang tidyr VIM]; }; missDeaths = derive2 { name="missDeaths"; version="2.7"; sha256="1c8vbc7r1g4dkngmal6iqg7piw656h1vc6cmpkv16vjn4j0w2n2c"; depends=[cmprsk MASS mitools Rcpp relsurv rms survival]; }; missDiag = derive2 { name="missDiag"; version="1.0.1"; sha256="04zd3nds44sy7nz73kdq9wjis3r9zyp0kda54mfqps1sh9jnizlq"; depends=[cobalt Formula]; }; - missForest = derive2 { name="missForest"; version="1.4"; sha256="0y02dhrbcx10hfkakg5ysr3kpyrsh2d9i5b0qzhj9x5x0d5q11gp"; depends=[foreach itertools randomForest]; }; + missForest = derive2 { name="missForest"; version="1.5"; sha256="13c38hpl60ca1kwyv61cxsla6ccmsj4qzp0vrxcq7b827fh5aw21"; depends=[doRNG foreach iterators itertools randomForest]; }; missMDA = derive2 { name="missMDA"; version="1.18"; sha256="1s7ph89y0mrksdi73nnjnxl2354401ny8ziijzf036rcsiyvl8m5"; depends=[doParallel FactoMineR foreach ggplot2 mice mvtnorm]; }; missMethods = derive2 { name="missMethods"; version="0.3.0"; sha256="12hr9j0433cjm1qk8fma7sqlim4klay83mvpai9csqil214sb73a"; depends=[]; }; missRanger = derive2 { name="missRanger"; version="2.1.3"; sha256="1kk64q9ip6hhjcyrvnm5yd8ikilrvvw1vjz8166c6jb8xrqwbb2v"; depends=[FNN ranger]; }; missSBM = derive2 { name="missSBM"; version="1.0.2"; sha256="09i7cm4nsssn0scr5lmxs4yczcm7z3b4crj8jl7nhqf1azsvcd0n"; depends=[future_apply ggplot2 igraph magrittr Matrix nloptr R6 Rcpp RcppArmadillo rlang RSpectra sbm]; }; - missSOM = derive2 { name="missSOM"; version="1.0.0"; sha256="02hi37jha49dppcv5cyzpcayb4b7mpmcp56nspbrlnxp9dgy7pim"; depends=[kpodclustr Rcpp]; }; + missSOM = derive2 { name="missSOM"; version="1.0.1"; sha256="15cqqz6f2npsz78yhj3ialzmlx7a8jsf27gfmmj4h68r01czyhs1"; depends=[kpodclustr Rcpp]; }; missingHE = derive2 { name="missingHE"; version="1.4.1"; sha256="1bxpp88rwnv4fc9lm606cczj1dx63p507sqsr71dblgsfw3aw7xy"; depends=[bayesplot BCEA coda ggmcmc ggplot2 ggpubr ggthemes gridExtra loo mcmcplots mcmcr R2jags]; }; mistat = derive2 { name="mistat"; version="2.0.3"; sha256="068ycnnkqcmf3sracsa279lggyc1qxdkpcba7ghax0xl4y505yxj"; depends=[]; }; mistr = derive2 { name="mistr"; version="0.0.5"; sha256="02jm6z4a6zkqh7bfdmc1pqvdvz03crihwi9s60gv15c8xwr1dq7p"; depends=[bbmle]; }; mistral = derive2 { name="mistral"; version="2.2.1"; sha256="19iq9a3k7xyxafvm73ib8mj1k7ys69aznplqhidl5z8vdl92dmb7"; depends=[DiceKriging doParallel e1071 emoa foreach ggplot2 iterators Matrix mvtnorm quadprog Rcpp]; }; - misty = derive2 { name="misty"; version="0.4.4"; sha256="1cixlngn782gcjpyzci0xbw5lk852azrc5540kdci6bpx5h677mj"; depends=[ggplot2 haven lavaan lme4 nlme norm r2mlm readxl writexl]; }; + misty = derive2 { name="misty"; version="0.4.5"; sha256="1brspql6z5zxva8cm8ds3wn47a0c95xdwh3z3hgxrbiw6qj65kzb"; depends=[ggplot2 haven lavaan lme4 nlme norm r2mlm readxl writexl]; }; mitml = derive2 { name="mitml"; version="0.4-3"; sha256="00i18nnvrdrg91crgcp2a431xs71cawaip3xkqk2myv0iav3xga9"; depends=[haven jomo pan]; }; mitools = derive2 { name="mitools"; version="2.4"; sha256="0c2x2n1p53lcw0vx4vmy5j7m2f95i7g2iwbryl89imr99rvz617j"; depends=[DBI]; }; mitre = derive2 { name="mitre"; version="1.0.0"; sha256="0r5phzxiibwwhx3qh623grfy070c3vzm4q07rzhsp5q5ycb5jhn5"; depends=[dplyr igraph jsonlite plyr RJSONIO rlang stringr tidyr]; }; mix = derive2 { name="mix"; version="1.0-10"; sha256="0z16ddbh79kqxi64bl1h2sd8anpgc48n9d1nyr2zlln39nhv8w8g"; depends=[]; }; - mixAK = derive2 { name="mixAK"; version="5.3"; sha256="12vhg3qaz39hcc581gn0wfmcxj1yhggcsqic4ngy4gpmrg27yls0"; depends=[coda colorspace fastGHQuad lme4 mnormt]; }; - mixAR = derive2 { name="mixAR"; version="0.22.6"; sha256="1q1ibqv4mi2zxs0qq0r4c7vrsvkrdg8c0rs56kyv0ykgqirda4gz"; depends=[BB combinat e1071 fGarch gbutils MCMCpack mvtnorm permute Rdpack timeDate]; }; + mixAK = derive2 { name="mixAK"; version="5.4"; sha256="0997lvbmmxk0py7p5v9w8i5z7ii6k97aslc0mqm25cijrvy5f41w"; depends=[coda colorspace fastGHQuad lme4 mnormt]; }; + mixAR = derive2 { name="mixAR"; version="0.22.7"; sha256="1r8fbmwk75h41336vfc94qf5k1wy9hkyd2vjzasv8vxqdb66cwng"; depends=[BB combinat e1071 fGarch gbutils MCMCpack mvtnorm permute Rdpack timeDate]; }; mixComp = derive2 { name="mixComp"; version="0.1-2"; sha256="01zgf31mmnjnwwji9yadfhwa49xy4i3wf0f5glifmpnvmr6d7y1d"; depends=[boot cluster expm kdensity matrixcalc Rsolnp]; }; mixEMM = derive2 { name="mixEMM"; version="1.0"; sha256="0344ay1avi37kvh5w9bknayx67yh7rflj6zhw68d2888v7cbghjy"; depends=[]; }; mixIndependR = derive2 { name="mixIndependR"; version="1.0.0"; sha256="0wjzs56axdjas2a9ynw3gd78h0fgcfjpx3bk7nm895lmadyzih6y"; depends=[data_table]; }; @@ -12675,7 +12391,6 @@ in with self; { mixcure = derive2 { name="mixcure"; version="2.0"; sha256="0jjbamn53iqrrx658wk3cz43grsbn1275p81256h4lia35s7cww3"; depends=[boot flexsurv gam survey survival timereg]; }; mixdir = derive2 { name="mixdir"; version="0.3.0"; sha256="1vgxxzsrl660agk4cjw4q4gx28fv5mkzpjy4qanq5c9mqpcxbxkc"; depends=[extraDistr Rcpp]; }; mixdist = derive2 { name="mixdist"; version="0.5-5"; sha256="1wchhysd33xz395hq4wgd3zv1qc92pbiqxqd7g2v6m1pb0j8ma9g"; depends=[]; }; - mixedCCA = derive2 { name="mixedCCA"; version="1.4.6"; sha256="177kd1cj1ziw1knxklgpz04wjrqazg4xia6q8jspnik6kra8crqa"; depends=[chebpol fMultivar irlba MASS Matrix mnormt pcaPP Rcpp RcppArmadillo]; }; mixedClust = derive2 { name="mixedClust"; version="1.0.2"; sha256="10hysjsld58cv0xif01xw08r0alr8xsnbp931x59lb36yi9g6f0m"; depends=[fda Rcpp RcppArmadillo RcppProgress]; }; mixedMem = derive2 { name="mixedMem"; version="1.1.2"; sha256="1p0gplfcn663xp40dk0yg70qffn1fwa9gxv7bppflgm9wkn8g3l5"; depends=[BH gtools Rcpp RcppArmadillo]; }; mixedsde = derive2 { name="mixedsde"; version="5.0"; sha256="0ss1ng4nx91gxj85wxxfyh9ljxsj3ag6lsj1a5d2815p9jzl7dsv"; depends=[MASS moments plot3D sde]; }; @@ -12695,33 +12410,32 @@ in with self; { mixture = derive2 { name="mixture"; version="2.0.4"; sha256="1kmvz7n5gif64awmrzwj3bbfbvl099047gygsvbwfjwnwazq3fah"; depends=[BH lattice Rcpp RcppArmadillo RcppGSL]; }; mize = derive2 { name="mize"; version="0.2.4"; sha256="1dfhldxsm1il9avfxvaiir9r878dp7swyc9c8ilm6llx208sd5d5"; depends=[]; }; mizer = derive2 { name="mizer"; version="2.3.0.1"; sha256="1v82ydz6y5vh72q82mxwprymvil7cv6l8lj5y44llkixvhl1ib15"; depends=[assertthat deSolve dplyr ggplot2 ggrepel lifecycle lubridate plotly plyr progress Rcpp reshape2 rlang]; }; - mkde = derive2 { name="mkde"; version="0.1"; sha256="04v84arpnmjrkk88ffphnhkz32x7y0dypk75jfmbbgcgv59xlglv"; depends=[raster Rcpp sp]; }; mkin = derive2 { name="mkin"; version="1.1.0"; sha256="0ifi0gg64ckzxn09yg1yyd380acr1kpk2vr0jc1zkg6b32ls13q9"; depends=[deSolve inline lmtest nlme numDeriv pkgbuild purrr R6 saemix]; }; mknapsack = derive2 { name="mknapsack"; version="0.1.0"; sha256="1kzmx7d512681a4hjirfgcd7a8rvndb4da66p16gms5nnxzsby9c"; depends=[assertthat data_table lpSolve]; }; mkssd = derive2 { name="mkssd"; version="1.2"; sha256="1vgg5azr4qydqb6xbdbff9256bwz7gl3k3hpn7998rm9jhdmynnd"; depends=[]; }; mlVAR = derive2 { name="mlVAR"; version="0.5"; sha256="11mn7gaqlmw01gvg7psqkkr5bgv4iclv0590av4xzbvq8496f5g2"; depends=[abind arm clusterGeneration corpcor dplyr graphicalVAR lme4 MplusAutomation mvtnorm plyr qgraph rlang]; }; - mlapi = derive2 { name="mlapi"; version="0.1.0"; sha256="023vk5bp8cjcq88sapkl87kdxr92bay1dyxl6xirnyj699pyj51k"; depends=[Matrix R6]; }; + mlapi = derive2 { name="mlapi"; version="0.1.1"; sha256="1qyiii6x9b89i4pd4yi2zd23aabpmnpj18gqi5va0zy0l8r7kknr"; depends=[Matrix R6]; }; mlbench = derive2 { name="mlbench"; version="2.1-3"; sha256="157iqsld0wj8g8cbs7nh6p2x6kasmkhs3078hsmqac946gk2pydi"; depends=[]; }; mlbstats = derive2 { name="mlbstats"; version="0.1.0"; sha256="1pfsc1pc5986gykx8l6afahszhaj4940l8g33fdxyy7194kbcz70"; depends=[]; }; mldr = derive2 { name="mldr"; version="0.4.3"; sha256="07lbxpydz78fya11bl3l1ckhbps3nx43ddh3z09ygg70jjbdhxwq"; depends=[circlize shiny XML]; }; mldr_datasets = derive2 { name="mldr.datasets"; version="0.4.2"; sha256="0zyfv8xy5yik0k3j0kf9r43xrvj528qzdb1v74sfi24vim6k6503"; depends=[]; }; mle_tools = derive2 { name="mle.tools"; version="1.0.0"; sha256="02yndj1if31zr9y805mq5km5n8jz4w9jz1bmaz9nnqsqimrnigrb"; depends=[]; }; - mlearning = derive2 { name="mlearning"; version="1.0-0"; sha256="0r8xfaxw83s2r27b8x5qd0k4r5ayxpkafzn9b1a0jvsr87i6520r"; depends=[class e1071 ipred MASS nnet randomForest]; }; + mlearning = derive2 { name="mlearning"; version="1.1.1"; sha256="1zjnh4gcw068li1bks60gazn3205xhmqz67hbkb1san33lmlxya3"; depends=[class e1071 ipred MASS nnet randomForest]; }; mlegp = derive2 { name="mlegp"; version="3.1.9"; sha256="1cs0l04axp6f6f6m4h4kw8z4pasxgp5la3xib04wxzb2l4bnsab3"; depends=[]; }; mlergm = derive2 { name="mlergm"; version="0.8"; sha256="0bpdljmbn4lfm263jcsp0hrknixn49m7hqsx0jjk3pfwhgjlajh8"; depends=[cowplot ergm GGally ggplot2 lpSolve Matrix network plyr reshape2 sna stringr]; }; mleur = derive2 { name="mleur"; version="1.0-6"; sha256="0mddphq3b6y2jaafaa9y41842kcaqdl3dh7j4pva55q2vcjcclj7"; depends=[fGarch lattice stabledist urca]; }; mlf = derive2 { name="mlf"; version="1.2.1"; sha256="09ihnibpknpp26hdlbxyr99yz7z0n8qpsjs5aq3zngng0yh3wdn9"; depends=[]; }; mlfit = derive2 { name="mlfit"; version="0.5.3"; sha256="0nyk5vmy2gkpz022djacy80gibskv96z0rsmjz2rw14zhc5kizsh"; depends=[BB dplyr forcats hms kimisc lifecycle Matrix plyr rlang tibble wrswoR]; }; - mlflow = derive2 { name="mlflow"; version="1.24.0"; sha256="0yqz0zlm2plz0i2p1zb3jaz4v8slr1p4jbk96cj9b5f6jsrvdkr2"; depends=[base64enc forge fs git2r glue httpuv httr ini jsonlite openssl processx purrr reticulate rlang swagger tibble withr yaml zeallot]; }; - mlica2 = derive2 { name="mlica2"; version="2.1"; sha256="0c3m1zd9x99n6lw12hfzmd59355z51xa8rhg1h7qwfn9p86r826f"; depends=[]; }; + mlflow = derive2 { name="mlflow"; version="1.25.1"; sha256="1b52wi464pg0plpj81jd77mphc2s4r4n6xcglzm7y69zq9hhqjfp"; depends=[base64enc forge fs git2r glue httpuv httr ini jsonlite openssl processx purrr reticulate rlang swagger tibble withr yaml zeallot]; }; mlmRev = derive2 { name="mlmRev"; version="1.0-8"; sha256="0ln4nazhc1prnlmvhfzhx268vx3klb0xnz1nsiwh0pwyskskyzym"; depends=[lme4]; }; mlma = derive2 { name="mlma"; version="6.1-1"; sha256="1z3v00g7ji0xkpz9ri4li3r7s8g2rcp2pc1p060cwsaidizs38dr"; depends=[abind car coxme gplots lme4 survival]; }; mlmc = derive2 { name="mlmc"; version="1.0.0"; sha256="01h7w0ajyg3bccynlpbi3yjpy089wczbfbajpg6yw5v4dppw7k7a"; depends=[ggplot2 Rcpp]; }; mlmi = derive2 { name="mlmi"; version="1.1.1"; sha256="0ksx5qih54ww983ycs08hhr50ms2c2k6pk07mrcwdgli7irzc2cc"; depends=[cat gsl MASS Matrix mix nlme norm]; }; mlmm_gwas = derive2 { name="mlmm.gwas"; version="1.0.6"; sha256="14xp8k7sww1skyw5l2006gpaw2c6yrri5nmfx4yav4vqdlhcj2k1"; depends=[coxme Matrix multcomp multcompView sommer]; }; mlmmm = derive2 { name="mlmmm"; version="0.3-1.2"; sha256="1m5ziiqs3ll1xjm1yf7x4sdc910jypn3kjnbadf95xxkvqmfrsqq"; depends=[]; }; + mlmts = derive2 { name="mlmts"; version="1.0.1"; sha256="1j6yq4aj2kpqli6xk09ki1vrx91r2n5jasqhx361qp5rn8cn66h7"; depends=[AID caret ClusterR complexplus DescTools dtw e1071 evolqg fda_usc forecast freqdom geigen ggplot2 MASS Matrix MTS multiwave pracma pspline psych quantspec ranger Rdpack Rfast TSA TSclust TSdist tseries tseriesChaos tsfeatures waveslim]; }; mlogit = derive2 { name="mlogit"; version="1.1-1"; sha256="0hyi6gi03n895iydrfr1ba2ifbsd6lyjyhkq62d95ghhniysjgkg"; depends=[dfidx Formula lmtest MASS Rdpack statmod zoo]; }; - mlogitBMA = derive2 { name="mlogitBMA"; version="0.1-6"; sha256="1wl8ljh6rr1wx7dxmd1rq5wjbpz3426z8dpg7pkf1x9wr94a2q25"; depends=[abind BMA maxLik]; }; + mlogitBMA = derive2 { name="mlogitBMA"; version="0.1-7"; sha256="0q8c5897z8f519nf6p55ksc610a9dbpnah2rr4srij4gs9a4clx1"; depends=[abind BMA maxLik]; }; mlpack = derive2 { name="mlpack"; version="3.4.2.1"; sha256="0fqpajcmqn9rijzjg7qj0zd2lik4xmhp5dmhbm3mdc9ssdg0axbr"; depends=[BH Rcpp RcppArmadillo RcppEnsmallen]; }; mlquantify = derive2 { name="mlquantify"; version="0.2.0"; sha256="1fpwvix0f4bmqb1y1b6wryndqp6j24dwsspbfx1zrnhzwj1v4i9i"; depends=[caret FNN randomForest]; }; mlr = derive2 { name="mlr"; version="2.19.0"; sha256="04v1br59ykzhzaiybjyyknbrc7ai5nl5l106b7482r49afscjj8i"; depends=[backports BBmisc checkmate data_table ggplot2 parallelMap ParamHelpers stringi survival XML]; }; @@ -12730,20 +12444,21 @@ in with self; { mlr3cluster = derive2 { name="mlr3cluster"; version="0.1.3"; sha256="034kbgkiysl66087ayy2mhk4xpigxz0i850msifb2ybd1wirvhcn"; depends=[backports checkmate clue clusterCrit data_table mlr3 mlr3misc paradox R6]; }; mlr3data = derive2 { name="mlr3data"; version="0.6.0"; sha256="093rxpsdljk44cbg6x6ypmgvcb5v80kl92mzw1fdzsycgpp6k5xc"; depends=[]; }; mlr3db = derive2 { name="mlr3db"; version="0.4.2"; sha256="17gahnzhraixxxmyinsh1pnrsfqy5kznw5ynfcwyrzpbinx4drih"; depends=[backports checkmate data_table mlr3 mlr3misc R6]; }; + mlr3fairness = derive2 { name="mlr3fairness"; version="0.3.0"; sha256="00bwqz3vg8jnz3fbds7bj66bcpx48i8fnf8dqb4knmpbz2jz4d9l"; depends=[checkmate data_table ggplot2 mlr3 mlr3measures mlr3misc mlr3pipelines paradox R6]; }; mlr3filters = derive2 { name="mlr3filters"; version="0.5.0"; sha256="14qq42rj8r6304yb54bs4fjld202zqf2lwd0vrz8ak6sn6jn7dbs"; depends=[backports checkmate data_table mlr3 mlr3misc paradox R6]; }; - mlr3fselect = derive2 { name="mlr3fselect"; version="0.6.1"; sha256="064rc35ij833pwcwg0xx600j8vbv762irr4cld7x356ijprd51ys"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3pipelines paradox R6]; }; - mlr3hyperband = derive2 { name="mlr3hyperband"; version="0.4.0"; sha256="0r7wm6s1k5jsx18f625970vxj7mccla5hxwnxhn6m8w5fic2kaa3"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3tuning paradox R6]; }; + mlr3fselect = derive2 { name="mlr3fselect"; version="0.7.1"; sha256="17jja4g6iknpw8kf2vslz86sj9wjzr0kkr7fhlckh54q4gpngbmm"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3pipelines paradox R6]; }; + mlr3hyperband = derive2 { name="mlr3hyperband"; version="0.4.1"; sha256="01in4braypk7nf8418x4qi7maa1jwrlxfs688rxb3887mns6426h"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3tuning paradox R6]; }; mlr3learners = derive2 { name="mlr3learners"; version="0.5.2"; sha256="1d9hcrnj622ynrzg0ii0fkhz2n66ip46yln21jq1pwpwkqwqzv35"; depends=[checkmate data_table mlr3 mlr3misc paradox R6]; }; mlr3measures = derive2 { name="mlr3measures"; version="0.4.1"; sha256="1kbw3xd7c9x65v9zzs8i5skmrvl0mf2wsbyssmiif0lvrbzfhcmb"; depends=[checkmate PRROC]; }; mlr3misc = derive2 { name="mlr3misc"; version="0.10.0"; sha256="1wnzyij1x67smkb3gjb9gpp7iy5andfl0s1c78xx4wylhycc6m11"; depends=[backports checkmate data_table digest R6]; }; mlr3oml = derive2 { name="mlr3oml"; version="0.5.0"; sha256="1w4hjzzmy968mzgyg6ybcpq09n9zkhiwi2ccm41rvwaysl27rgfd"; depends=[backports checkmate curl data_table jsonlite lgr mlr3 mlr3misc R6 stringi]; }; mlr3pipelines = derive2 { name="mlr3pipelines"; version="0.4.0"; sha256="0913f67c1r9bi68gxh1prsp0vch21bl6plahnvjrlbq8rrs1sr6p"; depends=[backports checkmate data_table digest lgr mlr3 mlr3misc paradox R6 withr]; }; - mlr3proba = derive2 { name="mlr3proba"; version="0.4.4"; sha256="03ypd6mvqapgisb75y619v5pqdbpx3s68q5vdffp4nzpj2wzvnmi"; depends=[checkmate data_table distr6 mlr3 mlr3misc paradox R6 Rcpp survival]; }; + mlr3proba = derive2 { name="mlr3proba"; version="0.4.9"; sha256="1qhxwx881b482wp85chw0s9390kwyhq32bjr4rlpscb53ppqx6v5"; depends=[checkmate data_table distr6 mlr3 mlr3misc paradox R6 Rcpp survival survivalmodels]; }; mlr3shiny = derive2 { name="mlr3shiny"; version="0.2.0"; sha256="0s581aqi3a3kg35db0gnsmmg62zwl5bij4vbszjhc63i3xg0ayiz"; depends=[data_table DT e1071 mlr3 mlr3learners mlr3measures plyr purrr ranger readxl shiny shinyalert shinydashboard shinyjs shinythemes shinyWidgets stringr]; }; mlr3spatial = derive2 { name="mlr3spatial"; version="0.1.2"; sha256="1iwbrr9bmwk3bdf7qycn8kpfyqb6n8cracrjj2cafb3xj2r5vimn"; depends=[checkmate data_table lgr mlr3 mlr3misc R6 terra]; }; mlr3spatiotempcv = derive2 { name="mlr3spatiotempcv"; version="1.0.1"; sha256="1fws2jqjbjkbcww1nkl6pvj1gzwb3b52q8fykwf7mivgqf93ipzf"; depends=[checkmate data_table ggplot2 mlr3 mlr3misc paradox R6]; }; - mlr3tuning = derive2 { name="mlr3tuning"; version="0.13.0"; sha256="0czlpi8bshn8cjq7pa1cyy7lpv35g4hv2nbyhc59zrcykzfv8afm"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc paradox R6]; }; - mlr3tuningspaces = derive2 { name="mlr3tuningspaces"; version="0.1.1"; sha256="14hsm00n3nk7x6521kccakkj0hpmw3c3yjl7dh6hjhggg9p6xkz9"; depends=[checkmate data_table mlr3 mlr3misc mlr3tuning paradox R6]; }; + mlr3tuning = derive2 { name="mlr3tuning"; version="0.13.1"; sha256="0jfslx6pwk408ydn69grrvsp22jd7gsjmwvss0a1j0zav3q1pvks"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc paradox R6]; }; + mlr3tuningspaces = derive2 { name="mlr3tuningspaces"; version="0.2.0"; sha256="05p50krsbi60rblmcvypj9rj2zyfxg6h1ffdahkh3mjwcizw3xww"; depends=[checkmate data_table mlr3 mlr3misc mlr3tuning paradox R6]; }; mlr3verse = derive2 { name="mlr3verse"; version="0.2.4"; sha256="02bmdvkh76qzimkrkaqkmjxpzx1sds3wkawp8d62a3dqd5225f9s"; depends=[bbotk data_table mlr3 mlr3cluster mlr3data mlr3filters mlr3fselect mlr3hyperband mlr3learners mlr3misc mlr3pipelines mlr3proba mlr3tuning mlr3tuningspaces mlr3viz paradox]; }; mlr3viz = derive2 { name="mlr3viz"; version="0.5.8"; sha256="1hcxy1941ijv487lnrm8q9ixl545m2agqlv0x0sk213g8cpk57gb"; depends=[checkmate data_table ggplot2 mlr3misc scales viridis]; }; mlrCPO = derive2 { name="mlrCPO"; version="0.3.7-3"; sha256="0vq163ca446l2sb3jbn8wmvj26zsrpz52b1w7d8xgb0jjf2jhp91"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; }; @@ -12757,7 +12472,7 @@ in with self; { mltools = derive2 { name="mltools"; version="0.3.5"; sha256="045v28w7vz1zjxim8vfc6ncvg2mavr1q332x0hzlqpfzrk7gz4vh"; depends=[data_table Matrix]; }; mlxR = derive2 { name="mlxR"; version="4.2.0"; sha256="0pr564376q7pn0wbbw5q9mjfzdc0bpq1g4xj0bcdmb64binqllvb"; depends=[ggplot2]; }; mma = derive2 { name="mma"; version="10.5-1"; sha256="0frkx85f2wxp2a7hlmgjw4zs2ryl7lk2ihlb5bby6qchza8i6hgy"; depends=[car gbm gplots lattice survival]; }; - mmabig = derive2 { name="mmabig"; version="3.0-0"; sha256="032xphcrcwp9n3i8rcn4ipvvjmgh9qwmkdml40rx9fhg43qr31n1"; depends=[car glmnet gplots mma survival]; }; + mmabig = derive2 { name="mmabig"; version="3.1-0"; sha256="12drgrbq8pn8c6psf4cn7shr6rd9r9pjrdr4h7i1abvs20m4xxhf"; depends=[car glmnet gplots mma survival]; }; mmand = derive2 { name="mmand"; version="1.6.1"; sha256="19s6v083iry95akhc2ccj617sjcddalb6dp87j3lqjlgybxws62q"; depends=[Rcpp]; }; mmap = derive2 { name="mmap"; version="0.6-19"; sha256="0s3vlwdcwifl2a2byr0f2cc4vmbdparc55x889a3h115ga7k91w2"; depends=[]; }; mmapcharr = derive2 { name="mmapcharr"; version="0.3.0"; sha256="175qb6ay6zlcdcxzc86lmlddfzjc8j8i1b8cvi2q0j6nbl2kl50r"; depends=[Rcpp rmio]; }; @@ -12768,7 +12483,6 @@ in with self; { mme = derive2 { name="mme"; version="0.1-6"; sha256="1k60y1yrf7fv939v32kf3il7r3cws0kih4bpm0ap28fvbx3vr3yb"; depends=[MASS Matrix]; }; mmeln = derive2 { name="mmeln"; version="1.4"; sha256="0q5w3ajc1v798dyvryny2a0c52hzhxrjm4md08mqvww65pdzhqc4"; depends=[]; }; mmeta = derive2 { name="mmeta"; version="2.3"; sha256="0hyxpph2hfjwiy95r0n3h64aab5ziqp2a8gmmpp6nyc77h638czb"; depends=[aod]; }; - mmm2 = derive2 { name="mmm2"; version="1.2"; sha256="1h9pn5s3jjs4bydrr1qysjb4hv7vs4h3m7mvi22ggs2dzyz3b298"; depends=[gee]; }; mmmgee = derive2 { name="mmmgee"; version="1.20"; sha256="0y3pwnc9h7y2l9cvgfl62nl1vnnkla2y8082jhdvxsb3mk88rgad"; depends=[Matrix mvtnorm]; }; mmod = derive2 { name="mmod"; version="1.3.3"; sha256="1dz6887mlqbagjj98wcabmxj9hvsz8pgsizy1fqkwjhhs44c62y4"; depends=[adegenet pegas]; }; mmpf = derive2 { name="mmpf"; version="0.0.5"; sha256="1w1ll1l7yzwb1wmlrcfpgqyzni7yb20kxy422y867hx2ndxlfwpz"; depends=[checkmate data_table]; }; @@ -12779,8 +12493,8 @@ in with self; { mnis = derive2 { name="mnis"; version="0.3.1"; sha256="03ss2sp4gjjxlfip95p2vcc0nz8q7khm3iiyh1362n2xb6yp78k0"; depends=[dplyr httr janitor jsonlite purrr Rcpp stringi tibble]; }; mniw = derive2 { name="mniw"; version="1.0"; sha256="1iamq6cq027ncakm4rfx2p1k2mcj7nk5vk57m8ndnbmmi2y9wwv9"; depends=[Rcpp RcppEigen]; }; mnj = derive2 { name="mnj"; version="1.0"; sha256="05rz6krcq56zqvvaz3myf1aki2z635g2zrqyl25n2da1cvyjwdzq"; depends=[rpart]; }; - mnlfa = derive2 { name="mnlfa"; version="0.1-53"; sha256="1hw4m6zpb2322041aizam1l71zxz3i7siawid8npig8v9dhkaqrf"; depends=[CDM Rcpp RcppArmadillo]; }; mnonr = derive2 { name="mnonr"; version="1.0.0"; sha256="143qkn3bx37a6r7kgmspqh55l2r8k9f93jgxr6qpg51w411k5ilb"; depends=[]; }; + mnorm = derive2 { name="mnorm"; version="1.0.0"; sha256="0f0n1v09qx967rwibz79s4cfdysiqcpdrhp3rlq4sx5i6acndw8l"; depends=[Rcpp RcppArmadillo]; }; mnormt = derive2 { name="mnormt"; version="2.0.2"; sha256="0d7ka4l4fl1wi77r2r81dc91n6cbj2xrb3lsizz5y0ziscva0sjw"; depends=[tmvnsim]; }; mnreadR = derive2 { name="mnreadR"; version="2.1.6"; sha256="0h0l05l8cgrdrk8sk60p2284kp2xz35cygzyhlk0h2x29zhw7bb7"; depends=[dplyr ggplot2 nlme tibble tidyr]; }; mnt = derive2 { name="mnt"; version="1.3"; sha256="1wf2mq4zdhznv589j7snw0gpnfrlvq6lhfihi2n20qlwm3lb9naa"; depends=[MASS pracma]; }; @@ -12794,12 +12508,13 @@ in with self; { mockthat = derive2 { name="mockthat"; version="0.2.6"; sha256="12srlafk3ykzhrw65s1qzw3l566j285hi28rzrcpbgyr12720raa"; depends=[]; }; mod = derive2 { name="mod"; version="0.1.3"; sha256="0z5a6ps2m0cbw0n9kn44767m5jnbf1dl077i2p40fipv8xali9fb"; depends=[]; }; mod09nrt = derive2 { name="mod09nrt"; version="0.14"; sha256="1wn1y33bj9r712l0f063j5gcl423anjzmvgfy0ddihcrbpz4l7a0"; depends=[]; }; + mod2rm = derive2 { name="mod2rm"; version="0.0.2"; sha256="1bnnwhcvjk17876ygcll9ck96r9jvjkpij1ynrx0i9mh9kbi5r6a"; depends=[]; }; modEvA = derive2 { name="modEvA"; version="3.0"; sha256="0hpvg3zzi3n19y34rhffz1c8cfaza2yffyn3m7wzwf5l40pf00f8"; depends=[]; }; modMax = derive2 { name="modMax"; version="1.1"; sha256="1mx4623az7vzaqf530pklx7j92qwwq93pa2416lnr24jjcxgva2h"; depends=[gtools igraph]; }; - modQR = derive2 { name="modQR"; version="0.1.2"; sha256="0x4405gaxpmmy6a0r8s7sxdi2lnc76f2i174h7xqlrwqy13xyfvv"; depends=[geometry lpSolve]; }; + modQR = derive2 { name="modQR"; version="0.1.3"; sha256="15ks5i7s19r4s9faxn36qlcf4y150b6xji970kxgilcgxvfqkgd8"; depends=[geometry lpSolve]; }; modTurPoint = derive2 { name="modTurPoint"; version="0.1.0"; sha256="1m24vsi80ln1r7sr40pipaaanyc60yfxmjzf8l7nfy3yvyr8zqpn"; depends=[]; }; modchart = derive2 { name="modchart"; version="0.5"; sha256="1mn8zywqhxhvy0k6mn0jsn90g9yb6sxyv34syzzxrxs2kdzx5szg"; depends=[collapsibleTree dplyr DT dygraphs highcharter htmlwidgets jsonlite lazyeval leaflet magrittr networkD3 plotly RColorBrewer rgdal shiny shinyBS shinydashboard shinydashboardPlus sp sparkline sunburstR treemap]; }; - modeLLtest = derive2 { name="modeLLtest"; version="1.0.3"; sha256="0hf7y78yp3jb0af9df3df6n1z66y2iyhhmgyfz12c4iadly0v6x1"; depends=[coxrobust MASS quantreg Rcpp RcppArmadillo survival]; }; + modeLLtest = derive2 { name="modeLLtest"; version="1.0.4"; sha256="0m9djx3d2k0y38h0wyscwvzj0pvlfjqz2ar7j1rb29mhm7y8np70"; depends=[coxrobust MASS quantreg Rcpp RcppArmadillo survival]; }; modeest = derive2 { name="modeest"; version="2.4.0"; sha256="087dw0013y4m7fcl06mxylh9lnp6acysl80d80r9srv4pw4r950s"; depends=[fBasics stable stabledist statip]; }; modehunt = derive2 { name="modehunt"; version="1.0.7"; sha256="0qz9kmf1qfs2dr7kzm9l7ac0h5rvi3b9j9896p991sk4bcalsl0b"; depends=[]; }; model4you = derive2 { name="model4you"; version="0.9-7"; sha256="0pni9v3nradvy8sp2m07903vc7z610xrh426lf19dxss12kgrfi8"; depends=[Formula ggplot2 gridExtra partykit sandwich survival]; }; @@ -12811,12 +12526,11 @@ in with self; { modelc = derive2 { name="modelc"; version="1.0.0.0"; sha256="0xz1zgv5yyvq0yfnhm1kvb4wvlyn4ccd0lkwji55vq8hndvjvk98"; depends=[]; }; modeldata = derive2 { name="modeldata"; version="0.1.1"; sha256="0jgrwf9k8p9j3ywg3yv2wzwsx3snlwm3dd9vfqwhlr7j63jg3cm4"; depends=[]; }; modeldb = derive2 { name="modeldb"; version="0.2.2"; sha256="14s8xh05qxv414xcnww1b3s0jqwnjb3l1dqf7q1qbw33ilwcmsfb"; depends=[dplyr ggplot2 progress purrr rlang tibble tidypredict]; }; - modelfree = derive2 { name="modelfree"; version="1.1-1"; sha256="0ammka2wxx90z31zfzypw9dk5n118l0vxhykxbx6srfig2vdyn82"; depends=[PolynomF SparseM]; }; modelgrid = derive2 { name="modelgrid"; version="1.1.1.0"; sha256="1z6g0akczry7vldkk6anfq572zbsfzbd6qnyllgjpbxhy3rrrq0r"; depends=[caret dplyr ggplot2 lattice magrittr purrr]; }; modelimpact = derive2 { name="modelimpact"; version="1.0.0"; sha256="16sy7r6bw5nzx77rd27ihgvp7bs39xchgid94ssklj6syc3kn2vq"; depends=[dplyr magrittr]; }; modelplotr = derive2 { name="modelplotr"; version="1.1.0"; sha256="0i1ssfcyl97zaxc9khdngrmsq9ydrmgv2nd7c6kc6i9z93jbkk4k"; depends=[dplyr ggfittext ggplot2 gridExtra magrittr RColorBrewer rlang scales]; }; modelr = derive2 { name="modelr"; version="0.1.8"; sha256="1i31nff7bqibk6r4hhd4j1vzwbyaf8493v0bjaagn36njmysfnw2"; depends=[broom magrittr purrr rlang tibble tidyr tidyselect vctrs]; }; - modelsummary = derive2 { name="modelsummary"; version="0.9.6"; sha256="1nzahrqqfkc7zbksmlpyvnp7izpcyvck7nhg3nmr6q5paxm1g0f6"; depends=[broom checkmate generics glue insight kableExtra parameters performance rlang tables]; }; + modelsummary = derive2 { name="modelsummary"; version="0.10.0"; sha256="0pyv7kv2x1np3jjnr2ap3cvc1xjgsrkw5fp3p8g14bia6ihl65xq"; depends=[broom checkmate generics glue insight kableExtra parameters performance tables]; }; modeltests = derive2 { name="modeltests"; version="0.1.4"; sha256="0ii5sh8yz5yvf0gq41ia55dvbg8x9042x82j52ck6haxa0w8zpfy"; depends=[dplyr generics purrr testthat tibble]; }; modeltime = derive2 { name="modeltime"; version="1.2.0"; sha256="0xy5srnxmpn7xkzyal90pa49bvpmlyvps9g7rfh914nnciwn6ikn"; depends=[cli dials doParallel dplyr forcats foreach forecast ggplot2 glue gt hardhat janitor magrittr parsnip plotly prophet purrr reactable rlang scales StanHeaders stringr tibble tidyr timetk workflows xgboost yardstick]; }; modeltime_ensemble = derive2 { name="modeltime.ensemble"; version="1.0.0"; sha256="01mi6pkjn97c77kyddz6xsyz11kchkdqy6672p8r96h0wy7530a1"; depends=[cli doParallel dplyr foreach generics glue magrittr modeltime modeltime_resample parsnip purrr recipes rlang rsample stringr tibble tictoc tidyr timetk tune workflows yardstick]; }; @@ -12826,43 +12540,41 @@ in with self; { modeltools = derive2 { name="modeltools"; version="0.2-23"; sha256="1vqh69256h344sbj5affm0kmc77dakrxp6442xfdnfd0y5d8sgkb"; depends=[]; }; modelwordcloud = derive2 { name="modelwordcloud"; version="0.1"; sha256="0ardib0h923i7jk8bgcq6pn2zazx9acf9sdggifsk46hdz8hvqnm"; depends=[]; }; modernVA = derive2 { name="modernVA"; version="0.1.1"; sha256="1kjfgr7fcf0w27gx1wwapxcw5wisfv75mq9qc5hjnaivmsnkwsv3"; depends=[]; }; - moderndive = derive2 { name="moderndive"; version="0.5.3"; sha256="0j2wd5ydsdcr2v2qqs6h8m5jgmyv8j77pls0wr94pgp44zcprlw6"; depends=[broom dplyr formula_tools ggplot2 glue infer janitor knitr magrittr rlang stringr tibble]; }; + moderndive = derive2 { name="moderndive"; version="0.5.4"; sha256="0w4xj84f8dcq3ikxy3vhsyb85brsgcvnhzwawigh34mz64m7nhlc"; depends=[broom dplyr formula_tools ggplot2 glue infer janitor knitr magrittr rlang stringr tibble]; }; modest = derive2 { name="modest"; version="0.3-1"; sha256="07rs014hdcabp2n0gg14pz2gmqgbw38vjv7a80vkzzh3601hxqws"; depends=[knitr rhandsontable shiny shinyBS]; }; modesto = derive2 { name="modesto"; version="0.1.3"; sha256="1121zlbsp71rca7bqrhl2yshrz99iw48aldg506vcfcmym8hx7dy"; depends=[markovchain Rcpp]; }; modgetxl = derive2 { name="modgetxl"; version="0.4"; sha256="0j9fmhy3wra9qr8753a495ligfz5fwgydv3ixlfzx3sgbq882hic"; depends=[DT readxl shiny shinydashboard]; }; modi = derive2 { name="modi"; version="0.1.0"; sha256="0v78vzb22v2h2qlfhsyi0d2j3c2gj3wgv67p6gv74269kiaglf92"; depends=[MASS norm]; }; modifiedmk = derive2 { name="modifiedmk"; version="1.6"; sha256="1m1c36vyzyl0v0gfy9fqlprvs3pvanj20dn56kxpniykdylscn3w"; depends=[boot]; }; - modiscloud = derive2 { name="modiscloud"; version="0.14"; sha256="0vwhfp50yb21xkanvzk983vk0laflv60kj1ybx3fydfljwqx0rwj"; depends=[date raster rgdal sfsmisc sp]; }; modmarg = derive2 { name="modmarg"; version="0.9.6"; sha256="1l57sqhv1xm5g3z9rdlhkkq6gpbn7a3z8bk4dhvzm44xcfv8hi3i"; depends=[]; }; modnets = derive2 { name="modnets"; version="0.9.0"; sha256="01mh7sbgq3796h6ciih5xww8hm0xn8975jv0784yw15hxhzfchci"; depends=[abind corpcor ggplot2 glinternet glmnet gridExtra gtools igraph interactionTest leaps lme4 lmerTest Matrix mvtnorm pbapply plyr psych qgraph reshape2 systemfit]; }; modopt_matlab = derive2 { name="modopt.matlab"; version="1.0-2"; sha256="0g5mswalv4y7p1k3n8a6qf7wb072m4bjq2ml2j83dz2j2bmvygsd"; depends=[ROI ROI_plugin_glpk ROI_plugin_quadprog]; }; - moduleColor = derive2 { name="moduleColor"; version="1.08-3"; sha256="183l968l49b7jbmvsjjnmk1xd36cpjkp777c00gw1f73h6nb2na8"; depends=[dynamicTreeCut impute]; }; + moduleColor = derive2 { name="moduleColor"; version="1.8-4"; sha256="0p45cc21vxjgjn91n0s09l20mf4a8vrkh1d9i27ndn5msrpwn15k"; depends=[dynamicTreeCut impute]; }; modules = derive2 { name="modules"; version="0.10.0"; sha256="067qxwyp71x42rj8c9y75jhqy61jg8f8l4cbjvzmla454c2d4z8p"; depends=[]; }; modygliani = derive2 { name="modygliani"; version="1.0"; sha256="01g96cdm4hgbsh6xsdfjg7vp7zb138sxwgv0msrlm27a6p4fcnlx"; depends=[]; }; moexer = derive2 { name="moexer"; version="0.1.0"; sha256="0dk87g9141x03d0c0780458dh1icxd93ibqqrjz12wwdsa96hnxz"; depends=[assertthat cli dplyr glue httr jsonlite lubridate magrittr purrr readr rlang stringr tibble]; }; - moezipfR = derive2 { name="moezipfR"; version="1.0.2"; sha256="0sfl1c7cvm1milcglcvz9lyvgricsdm7shx0jxyn50y7xz0padww"; depends=[tolerance VGAM]; }; mogavs = derive2 { name="mogavs"; version="1.1.0"; sha256="0lhmwdv991bv7j8k066jr7ii94w60ydjpf5pzmv8jlblf3w2pr02"; depends=[cvTools]; }; mojson = derive2 { name="mojson"; version="0.1"; sha256="077c92jhizpvg5gdwq1zb0d74m743l5qylj6df8hhgyvahswnhnq"; depends=[compareDF iterators magrittr RJSONIO stringr tidyr]; }; mokken = derive2 { name="mokken"; version="3.0.6"; sha256="127wjfvwc1dbb4bpaxa3arqsc87nrhzwsr0ldrc57s4hf3ibmcbg"; depends=[poLCA Rcpp]; }; moko = derive2 { name="moko"; version="1.0.3"; sha256="1igrz0k9gfs4lmwh20bvmx8176d22g8gha7iv36mrpqgcynfdzh0"; depends=[DiceKriging emoa GenSA GPareto mco]; }; - molaR = derive2 { name="molaR"; version="4.5"; sha256="1mfb05cfg0jh60yxnmwhja6m38185r58kbz2ak0ikgaqd9lls07s"; depends=[alphahull rgl Rvcg]; }; + molaR = derive2 { name="molaR"; version="5.0"; sha256="1q354g050mgbh2wwh2yhf7d1qa19b5ard9aq785nn7bji4gqr683"; depends=[alphahull pracma rgl Rvcg]; }; molic = derive2 { name="molic"; version="2.0.3"; sha256="1qgb63wl5726mypv0f07wcf3aznl93vh045ghx66hiqj3kzfir2b"; depends=[doParallel ess foreach ggplot2 ggridges Rcpp]; }; molnet = derive2 { name="molnet"; version="0.1.0"; sha256="1ha1jyh3mmbv2zgr2zrrjmslwd1gyy04hvqjk4d3ap2kna35wlgk"; depends=[dplyr igraph magrittr readr Rfast rlang stringr tibble tidyr WGCNA]; }; mombf = derive2 { name="mombf"; version="3.1.3"; sha256="0za335manvaiv904246bwvw4m52pf6sfahxrha8kpsjcvzq8140m"; depends=[glmnet mclust mgcv mvtnorm ncvreg pracma Rcpp RcppArmadillo sgd survival]; }; momentchi2 = derive2 { name="momentchi2"; version="0.1.5"; sha256="1fv0jmwws4mkl9dsaybfpj29ncvqx2idsijgwz2qjblcg309a6k9"; depends=[]; }; momentfit = derive2 { name="momentfit"; version="0.2"; sha256="1xh3w3bwr2k4a79vma5cmz0l995nwbih0j7sgv3bjqdv4fn463d1"; depends=[sandwich]; }; - moments = derive2 { name="moments"; version="0.14"; sha256="0f9y58w1hxcz4bqivirx25ywlmc80gbi6dfx5cnhkpdg1pk82fra"; depends=[]; }; + moments = derive2 { name="moments"; version="0.14.1"; sha256="0r6qf3i1rzh2822bx1p0h8mh91gsbgg6asl2rzh2l4ys094bilif"; depends=[]; }; momentuHMM = derive2 { name="momentuHMM"; version="1.5.4"; sha256="1hcgrc7nhccn5bw7mgxahhbc6i3dc607g1109b5ahv94yq2ghj09"; depends=[Brobdingnag CircStats crawl doParallel doRNG foreach MASS mvtnorm numDeriv Rcpp RcppArmadillo rlang sp]; }; momr = derive2 { name="momr"; version="1.1"; sha256="091vzaw8dm29q89lg2iys25rbg2aslgdn9sk06x038nngxdrn95r"; depends=[gplots Hmisc nortest]; }; monaco = derive2 { name="monaco"; version="0.2.1"; sha256="1wwfwxv8064icdi6fhyrp3mrpv37x0cnnwdb5k1b88jfzb7j1hb6"; depends=[htmltools htmlwidgets rstudioapi shiny]; }; monashtipr = derive2 { name="monashtipr"; version="0.1.0"; sha256="050xa9ghhf5xy76vndry7rhqn3hn0lhz6wjwz9vxk6mcfy5j2wq5"; depends=[glue httr lifecycle magrittr purrr rlang rvest xml2]; }; mondate = derive2 { name="mondate"; version="0.10.02"; sha256="18nsqldj1vvv882nh2dyilqvz1jbhqkz3q69cpjq1xfcj0z88qxz"; depends=[]; }; - mongolite = derive2 { name="mongolite"; version="2.5.0"; sha256="1xy7ln2jgkb7mskcqa1l06pm66m3cm4n34ylmpq6jqsjla4b7drl"; depends=[jsonlite mime openssl]; }; + mongolite = derive2 { name="mongolite"; version="2.6.1"; sha256="1hxbdxxk5xwap3c8cdinmrr43alqfrgxxgl7x3gj7h3vp40c0cla"; depends=[jsonlite mime openssl]; }; mongopipe = derive2 { name="mongopipe"; version="0.1.1"; sha256="081l6d1kwh30wq5kwz9dd2a9221x9139x1xbvfiqixwv0g9sjjy0"; depends=[jsonlite magrittr rlang]; }; monitoR = derive2 { name="monitoR"; version="1.0.7"; sha256="1h1g0m1j13mz37xxwck4s7a0bfqvi0nrzfw60j7bkzaah8zxcc9n"; depends=[tuneR]; }; monmlp = derive2 { name="monmlp"; version="1.1.5"; sha256="19cx60csm8mnf6ksg64vlhi8wi1c7bmv9l55y9zmaljblr0kmzxf"; depends=[optimx]; }; monoClust = derive2 { name="monoClust"; version="1.2.1"; sha256="18zb4wfb09rpzzr9bc0nr71994nhgsk74s512dxlss50isvfqjqd"; depends=[cluster doParallel dplyr foreach ggplot2 permute purrr rlang stringr tibble tidyr]; }; - monobin = derive2 { name="monobin"; version="0.2.2"; sha256="1l3nc1sw206wdxswrz1l93zh0p9bi8xzipnszrab4jbcydn1f6qd"; depends=[dplyr Hmisc]; }; + monobin = derive2 { name="monobin"; version="0.2.3"; sha256="0w3gjzxj9mc49byl1i8ck939qp7dwn6jyf28fnlad67q9cb5z8ix"; depends=[dplyr Hmisc]; }; monobinShiny = derive2 { name="monobinShiny"; version="0.1.0"; sha256="1ix376j39fby5571irf8i5bmz8i7nnvfzbvs5cv0k42dcgq93m0g"; depends=[dplyr DT monobin shiny shinydashboard shinyjs]; }; monochromeR = derive2 { name="monochromeR"; version="0.1.0"; sha256="1zm5d4ipjlkvlhcqnq2cl5amv85n3iflb34915n12rjs68hbcjmd"; depends=[scales]; }; monographaR = derive2 { name="monographaR"; version="1.2.1"; sha256="09fkcw13h7dx7j5vyp48fk6yzv9n64568zf2zvmm2c008jw3gkbm"; depends=[circular maptools png raster rmarkdown sp]; }; @@ -12875,16 +12587,16 @@ in with self; { moonBook = derive2 { name="moonBook"; version="0.3.1"; sha256="1ml4vvm0mvrprpyi0l50aw38brx18bk2qny4gybmkvlbakalz9bx"; depends=[crayon magrittr nortest sjmisc stringr survival]; }; mopac = derive2 { name="mopac"; version="0.1.0"; sha256="07ljy6rwicyrv20l7zyxq2lb7qqfpl5mpv834m2n5c4air7sy23m"; depends=[]; }; mopsocd = derive2 { name="mopsocd"; version="0.5.1"; sha256="10hssnm1afqmxa9kw6ifqnz3p3yyjrmxgi98zlj31a5g4nis8wb1"; depends=[]; }; - moranajp = derive2 { name="moranajp"; version="0.9.3"; sha256="0kq9rns7pkm26w4530is52l60mcj3ry2hnwd2n4kjfx4s2bm80yn"; depends=[dplyr magrittr purrr rlang stringr tibble tidyr]; }; + moranajp = derive2 { name="moranajp"; version="0.9.4"; sha256="0xv3h7y6x48swl5qh83g1ncdm2d84d2xgxakl3289qv2g4rjpv45"; depends=[dplyr magrittr purrr rlang stringr tibble tidyr]; }; moreparty = derive2 { name="moreparty"; version="0.2.1"; sha256="0p30skq5x3rz3xbp2izq44v5c0byw7cw2han6bardah7xniz3w2d"; depends=[foreach ggplot2 iml MASS measures party partykit pdp plyr rlang varImp vip]; }; morgenstemning = derive2 { name="morgenstemning"; version="1.0"; sha256="17y90cf8ajmkfwla0hm4jgkbkd1mxnym63ph2468sfxkhn0r3v88"; depends=[]; }; morph = derive2 { name="morph"; version="1.0.0"; sha256="1xaca0da8fcymbjiqxxdp7z13283xd93crxv74401dqpbqv0vai3"; depends=[igraph reshape2 rgl stringr]; }; - morphemepiece = derive2 { name="morphemepiece"; version="1.1.2"; sha256="1lkk69sh84wqwx88qvy45dh65986gl7iziajsyl917qjxfnqkvn5"; depends=[dlr magrittr morphemepiece_data piecemaker purrr readr rlang stringr]; }; - morphemepiece_data = derive2 { name="morphemepiece.data"; version="1.1.0"; sha256="1mc2isjv4zfsks6y46mnfqhm37p13rnhddzx1kwkp2jllhq0d3f9"; depends=[]; }; + morphemepiece = derive2 { name="morphemepiece"; version="1.2.3"; sha256="1xilq8sz0q35xs4wzig5x29h5lqfin2x6pvkygn5pacl6wcdp80n"; depends=[dlr fastmatch magrittr memoise morphemepiece_data piecemaker purrr readr rlang stringr]; }; + morphemepiece_data = derive2 { name="morphemepiece.data"; version="1.2.0"; sha256="1fs1g5vv5qwrab0cj5wff4r9skiaa5mwfawa2j32skga6niaqydz"; depends=[]; }; morpheus = derive2 { name="morpheus"; version="1.0-1"; sha256="1zfx24ndlky0b6vg6an9vcjw955ms749dwb51x9gsj2m8vgrbpnn"; depends=[jointDiag MASS pracma]; }; morphomap = derive2 { name="morphomap"; version="1.3"; sha256="12jqrabx8vgkrfwcv4845jbf79ibg5iqzzzr4x4vybb4b2p2wd2i"; depends=[Arothron colorRamps DescTools geometry lattice mgcv Morpho oce raster rgdal rgl Rvcg sp]; }; morse = derive2 { name="morse"; version="3.3.1"; sha256="0p7a5p31i0lw0y84nk3ar2211rvlj5y96qq2lmmrrab17pcikg24"; depends=[coda deSolve dplyr epitools ggplot2 gridExtra magrittr reshape2 rjags tibble tidyr zoo]; }; - mortAAR = derive2 { name="mortAAR"; version="1.1.1"; sha256="0as88rl4v2shrfjqpvjajnb2wj00n3fj8mzj4g0ssywmccxji5ag"; depends=[magrittr Rdpack reshape2 tibble]; }; + mortAAR = derive2 { name="mortAAR"; version="1.1.2"; sha256="1ll5f0xb1cfhrg7f4pw04kgrcm0mwka8rhbgxd9l6y656ahz24db"; depends=[magrittr Rdpack reshape2 tibble]; }; mortyr = derive2 { name="mortyr"; version="0.0.2"; sha256="0flihmkzw8dypp2ijq22cd3rka6h8cd1qdyr4zrs9cv5335nddmk"; depends=[httr jsonlite tibble]; }; mosaic = derive2 { name="mosaic"; version="1.8.3"; sha256="1y0isqbva0vi5zlx1xvixbq87n4xp66ljh43qnd0cpzaz0mn21cg"; depends=[broom dplyr ggdendro ggformula ggplot2 ggrepel ggridges ggstance glue gridExtra lattice latticeExtra leaflet MASS Matrix mosaicCore mosaicData readr rlang tidyr]; }; mosaicCalc = derive2 { name="mosaicCalc"; version="0.5.1"; sha256="0w5j7q314hzfzaw24ych2dhn255lnn3w0x4xr47qc1zclbmbny91"; depends=[ggformula magrittr MASS mosaic mosaicCore rlang]; }; @@ -12895,24 +12607,22 @@ in with self; { mosqcontrol = derive2 { name="mosqcontrol"; version="0.1.0"; sha256="199rkfisagr4kfx358f8yrbls00fng0kq8siyrbfwwf8qrba9fla"; depends=[assertthat magrittr NlcOptim nloptr pracma sfsmisc]; }; mosum = derive2 { name="mosum"; version="1.2.6"; sha256="1xbh06sxvqgwqmid2x1lba43b20ma0gpw8mqgjnii51g7masb9kb"; depends=[plot3D RColorBrewer Rcpp]; }; motif = derive2 { name="motif"; version="0.5.0"; sha256="1lvybnahxg5xr1rqih1nczqgywcywnjwzdix8asgyl0ayh9fsv21"; depends=[comat philentropy Rcpp RcppArmadillo sf stars tibble]; }; - motifcluster = derive2 { name="motifcluster"; version="0.1.2"; sha256="11qv4289qvh7gsbcz42hdlfbrgjvb390pjyf2imdih2xd7bk48fa"; depends=[igraph LICORS Matrix RSpectra]; }; + motifcluster = derive2 { name="motifcluster"; version="0.2.0"; sha256="04r8xzj5mj522nvmak1l94df7v1zidl5jqdfjhmvs05mpsprrhl8"; depends=[ClusterR igraph Matrix RSpectra]; }; motifr = derive2 { name="motifr"; version="1.0.0"; sha256="01synariq39mzhx12jbcpwn982piakakl97sgs33xa8xrbwzcxgm"; depends=[dplyr ggplot2 ggraph igraph intergraph network purrr RColorBrewer reshape2 reticulate rlang scales tibble tidygraph]; }; motmot = derive2 { name="motmot"; version="2.1.3"; sha256="09qsyc4ifdl316kjqqkarmflpjcd0ivkhx5fzi3502anj6dxpjnq"; depends=[ape caper coda ks mvtnorm Rcpp]; }; motoRneuron = derive2 { name="motoRneuron"; version="1.0.0"; sha256="1hdsf4c1v5hfaqpi5y1v60zqq5fdmlqdvzpsq77diclp9vzdshja"; depends=[dygraphs ggplot2]; }; moult = derive2 { name="moult"; version="2.2.1"; sha256="1aarny5p0rpmzibfsz27allr6xc6267ylc3wvpk7pzch6yj759zm"; depends=[Formula Matrix]; }; - mountainplot = derive2 { name="mountainplot"; version="1.3"; sha256="1mgvcv58pb3ximrf7gq1ii53gmjrn1qajayjlx8qqzsvjkn3myin"; depends=[lattice]; }; + mountainplot = derive2 { name="mountainplot"; version="1.4"; sha256="11fz2p6hpamk38n41z97af4az55j69rlais6ff61j9imdkq6f1pr"; depends=[lattice]; }; mousetrack = derive2 { name="mousetrack"; version="1.0.0"; sha256="0lf0xh0c3xl27nh5w8wwyrm2jfzfajm2f73xjdgf746dp365qc8n"; depends=[pracma]; }; mousetrap = derive2 { name="mousetrap"; version="3.2.1"; sha256="12vlb5fhq9m2f3c073xzdqk98gdq7jk2rwj6kcckxx6x7wg20fyd"; depends=[cstab diptest dplyr fastcluster fields ggplot2 lifecycle magrittr pracma psych RColorBrewer Rcpp rlang scales tidyr]; }; - movMF = derive2 { name="movMF"; version="0.2-6"; sha256="1nkwvfjqh5zzkjc94ryr5blcw7x7ycqyyqb6pvs78ia3kzmls17q"; depends=[clue skmeans slam]; }; + movMF = derive2 { name="movMF"; version="0.2-7"; sha256="1n2s03h9ksn0sv7k8w93ddy5q1m35nw4jywa98yk0yiq3s4dvsnx"; depends=[clue skmeans slam]; }; move = derive2 { name="move"; version="4.1.6"; sha256="0zi9mgi5kb26brj5qqchvssc26krdndsszs6zv7cggnry1pc8999"; depends=[geosphere httr memoise raster Rcpp rgdal sp xml2]; }; - moveHMM = derive2 { name="moveHMM"; version="1.7"; sha256="031msh427hgjyr37imalr7smd79yqscw9xq5rjrixxc2w5qly9jj"; depends=[boot CircStats geosphere ggmap ggplot2 MASS numDeriv Rcpp RcppArmadillo sp]; }; + moveHMM = derive2 { name="moveHMM"; version="1.8"; sha256="1rd7ajpysly8drddb02hi3ss2qd9sy90hrlppc0l5bwz2lvncf3c"; depends=[boot CircStats geosphere ggmap ggplot2 MASS numDeriv Rcpp RcppArmadillo sp]; }; moveVis = derive2 { name="moveVis"; version="0.10.5"; sha256="1lj22yr6v3vg795r72gkbhyabycppxbjsaldqiqgckhkdfh3lziw"; depends=[av cowplot curl ggplot2 gifski lubridate lwgeom magick magrittr move pbapply raster sf slippymath]; }; moveWindSpeed = derive2 { name="moveWindSpeed"; version="0.2.3"; sha256="14a2iymn4j831xlh42z5qxmhnh7xpp5bxasgpkhnb3v0b5ldyilh"; depends=[move Rcpp]; }; movecost = derive2 { name="movecost"; version="1.6"; sha256="05hq7k6axhz5vvy3hpw85w27bmm0s720nqzy43q529pc8mxp5vww"; depends=[chron elevatr gdistance maptools raster rgdal rgeos sp spatstat_geom]; }; - mozzie = derive2 { name="mozzie"; version="0.1.0"; sha256="09dwrv4r0hi19gzi1vpif3q4wlbny9h22430g1hhv0wkqs86mhmw"; depends=[]; }; mp = derive2 { name="mp"; version="0.4.1"; sha256="0awvwqwb25q47j14b450k1k5mh2yzwhn7gizjv5j7lyiamk30iwq"; depends=[Rcpp RcppArmadillo]; }; mpath = derive2 { name="mpath"; version="0.4-2.22"; sha256="0i4vyli3sr1lzrj0ayzsq55cpsv0xrwn216lgzmfyjr5n8r9aw7r"; depends=[bst doParallel foreach glmnet MASS numDeriv pamr pscl WeightSVM]; }; - mpbart = derive2 { name="mpbart"; version="0.2"; sha256="1145n0lxmm0kjm2lc358d79hqws48crj17pjvmchl1pbfd7zi4r8"; depends=[bayesm cvTools mlbench mlogit]; }; mpcmp = derive2 { name="mpcmp"; version="0.3.6"; sha256="1jzrmaxm133zy4wi5pzjlj6gnh89nx4j69dnwm4s4y3i7ixch908"; depends=[dplyr generics ggplot2 ggpubr purrr Rcpp rlang stringr tibble]; }; mpcv = derive2 { name="mpcv"; version="1.1"; sha256="0vwycspiw9saj811f6alkbijivy7szpahf35bxn2rpn2bdhbn21i"; depends=[lpSolve]; }; mpe = derive2 { name="mpe"; version="1.0"; sha256="17bgdbg1zrf78djd3mwycidwibxvsis7pwkrcynvghcc8l2zfci9"; depends=[mvtnorm]; }; @@ -12933,11 +12643,11 @@ in with self; { mra = derive2 { name="mra"; version="2.16.11"; sha256="0268msdy4cs2ifpagmwiabi6aav54ckn214ai18aqv2h97hmixw0"; depends=[]; }; mratios = derive2 { name="mratios"; version="1.4.2"; sha256="18pi0dks0qmw0gv76yqm4gvxdqrcvr25j1vb8k4mkp5p35kzkzff"; depends=[multcomp mvtnorm survival survPresmooth]; }; mrbayes = derive2 { name="mrbayes"; version="0.5.1"; sha256="11n3d18di01vmwqs5a0i1h8839aammzbcavi1jk58bmrwb3l771j"; depends=[BH plyr Rcpp RcppEigen rstan rstantools StanHeaders]; }; - mrbin = derive2 { name="mrbin"; version="1.6.3"; sha256="0w9m1mmvp6m3zhkxdr7fj96z143kq0qnc6kpg2ixn1sl4nzdfx0c"; depends=[]; }; + mrbin = derive2 { name="mrbin"; version="1.6.4"; sha256="1wvr87mkb2vfkg5xqhrvy1l646fg0ai62pr76k33dgq51lqd94by"; depends=[]; }; mrbsizeR = derive2 { name="mrbsizeR"; version="1.2.1.1"; sha256="0v06sd5sh7ghlr8lgrv6l4glmv7chj3951pw4ssxrly4hz2rh6i0"; depends=[fields maps Rcpp]; }; mrds = derive2 { name="mrds"; version="2.2.6"; sha256="1xk8dr48gh3dqb1zx4ijd7z8dgkfs7lvp50y9irqdxax35cjd6f2"; depends=[mgcv numDeriv optimx Rsolnp]; }; - mreg = derive2 { name="mreg"; version="1.1"; sha256="06la0yy2yys161jhlzlcm5lcv0664wm6sa8gjdnpd1s1nx52jkqf"; depends=[]; }; - mregions = derive2 { name="mregions"; version="0.1.6"; sha256="0ix77hqcllhcpldchlnvciiflm6ysylynnnqvczpf8vx7gwa3lrk"; depends=[data_table httr jsonlite rappdirs sp tibble wellknown xml2]; }; + mreg = derive2 { name="mreg"; version="1.2.0"; sha256="1gz19d4l0q3xd1w72ip6mhv20w8fgaaczkkdv40bflwabpxdy420"; depends=[]; }; + mregions = derive2 { name="mregions"; version="0.1.8"; sha256="16z610j01nf9k1hamsxydk2j6qdqpbyj29b5hm9r3fi8fm3smhd6"; depends=[data_table geojson geojsonio geojsonsf httr jsonlite rappdirs sf sp tibble xml2]; }; mrf = derive2 { name="mrf"; version="0.1.6"; sha256="0jqpx0ng0l8f7y941awpi82yqbv8ir0sixiw6zdkqpj82d9a7j9m"; depends=[DEoptim forecast limSolve monmlp nnfor]; }; mrf2d = derive2 { name="mrf2d"; version="1.0"; sha256="0fmxn178bkw77iz51bnjxala9xmhs44km57m8msvlw0k69sddyif"; depends=[dplyr ggplot2 Rcpp RcppArmadillo Rdpack tidyr]; }; mrfDepth = derive2 { name="mrfDepth"; version="1.0.13"; sha256="177331j30n707mcl1ghxjc53xjs9qsal15kccc71b0rabkjdq2wv"; depends=[abind geometry ggplot2 matrixStats Rcpp RcppArmadillo RcppEigen reshape2]; }; @@ -12952,10 +12662,9 @@ in with self; { ms_sev = derive2 { name="ms.sev"; version="1.0.4"; sha256="1sr2rgiskgwjhwif70qj6ga8i8kg4bh342hff66b2a54rxrchmw5"; depends=[]; }; msBP = derive2 { name="msBP"; version="1.4"; sha256="17hsnfipb6mgwhbc9rxzx5azc57ravz7zfnbc8r73sn1b270ydpb"; depends=[]; }; msSPChelpR = derive2 { name="msSPChelpR"; version="0.8.7"; sha256="1rmzjyk7qa91rwlwa2jcr54hi5dihlgjk080iqb36xsl6rgkrb1f"; depends=[data_table dplyr lubridate magrittr progress purrr rlang sjlabelled stringr tidyr tidyselect tidytable]; }; - msSurv = derive2 { name="msSurv"; version="1.2-2"; sha256="02qm3mq17d2yj5mbz6gapd3zfi1wmiad5hpyimcb39impk43n2hf"; depends=[class graph lattice]; }; msaFACE = derive2 { name="msaFACE"; version="0.1.0"; sha256="1lh8crz507nlddm946lmn73xbnsh4cs0kg238ysnsvxs726c83fs"; depends=[]; }; msaR = derive2 { name="msaR"; version="0.6.0"; sha256="12d6vql85d1mzcy889z7pbmldcwwmzijimcr9frm12ahmka81byx"; depends=[ape htmlwidgets]; }; - msae = derive2 { name="msae"; version="0.1.4"; sha256="06i5qysar9g7q18wy9h39qn5xw89794kbd58y8bah4bs3j5c5m47"; depends=[magic]; }; + msae = derive2 { name="msae"; version="0.1.5"; sha256="0ra4qj0yvyi4nl492hqj7l6cpyxwm1hq7mm15sip4rk2fm7h0kjf"; depends=[magic]; }; msaeDB = derive2 { name="msaeDB"; version="0.2.1"; sha256="0ccvg41d28qjbknhsamw95nq8fdibmz03pwblddkqywfl5yarii3"; depends=[magic MASS]; }; msaeHB = derive2 { name="msaeHB"; version="0.1.0"; sha256="1grmkr146csyim1lpgingjnp4km3sqlpzihln9cpkqaqhvl8rycj"; depends=[coda rjags]; }; msaeOB = derive2 { name="msaeOB"; version="0.1.0"; sha256="05m6r5jk21l9d2j546h7vf8caic83nm0y55zfamr94z4q221486x"; depends=[abind magic MASS Matrix]; }; @@ -12969,16 +12678,16 @@ in with self; { mscstts = derive2 { name="mscstts"; version="0.6.2"; sha256="0mf3hs150gz39s0lh2fqbpg632n7rmmb8ns5swgx2wi3svhrk5lm"; depends=[httr jsonlite tuneR]; }; mscsweblm4r = derive2 { name="mscsweblm4r"; version="0.1.2"; sha256="031s00wpr9zfjpii56m67q1phn05vqlhb8cfzhyf6fbrxvpb8k7n"; depends=[httr jsonlite pander]; }; msd = derive2 { name="msd"; version="0.3.1"; sha256="0n3zg2mwbmazbkk41jv94v28glj38d7f08d3w3xrlnlr9gsqh4sd"; depends=[]; }; - msda = derive2 { name="msda"; version="1.0.2"; sha256="05khpa5qasnngn6yvk87gv5262plqpw4knb6hzgy52w401k0y80r"; depends=[MASS Matrix]; }; msde = derive2 { name="msde"; version="1.0.5"; sha256="0q2jy5f8r5gfj2w8r0kmbgal3wjk37h62ahhjzbphrd8ghdf7za8"; depends=[Rcpp RcppProgress whisker]; }; msgl = derive2 { name="msgl"; version="2.3.9"; sha256="0793d12cd1mcnr97byhfwpnvm329w78f56n7dcs4116hlizp8l9h"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress sglOptim]; }; msgpackR = derive2 { name="msgpackR"; version="1.1"; sha256="0a6vm4q1zfy8wlvhl9wfy09ig1iag9fvjasz5w9bll7idky4ldx5"; depends=[]; }; - msgps = derive2 { name="msgps"; version="1.3.1"; sha256="0r8i0sw412jr148bid8sfpjcfbkf5589dqcqyvf5cm84cj7axnpz"; depends=[]; }; + msgps = derive2 { name="msgps"; version="1.3.4"; sha256="0068w10kq0jd9a160n45mg83hxmwhsj1mbrl3bcqg1wckrmmlxvl"; depends=[]; }; msgr = derive2 { name="msgr"; version="1.1.2"; sha256="15s3d77xqczjydgcfx4jlsq408hgsm8yzqk5248v58vm6zy36mh0"; depends=[purrr rlang]; }; mshap = derive2 { name="mshap"; version="0.1.0"; sha256="1q01q1w5wsiynabsvd5vl5jffiyxrmyj4ad6b07zhja0ff6b2n9j"; depends=[dplyr forcats ggbeeswarm ggplot2 magrittr purrr rlang stringr tidyr tidyselect]; }; msig = derive2 { name="msig"; version="1.0"; sha256="0gqd0kqlzhvp9widgjxbi5rz75bx0rkbnwbagjmzfv49f8g7yh46"; depends=[crayon do dplyr httr jsonlite kableExtra plyr rvest set sqldf stringr tmcn xml2]; }; msigdbr = derive2 { name="msigdbr"; version="7.5.1"; sha256="1jna9bkq0a7r6f8nhxziyiw75kfhsyh1rv7sx5d4551mvxxlhc6w"; depends=[babelgene dplyr magrittr rlang tibble tidyselect]; }; msir = derive2 { name="msir"; version="1.3.3"; sha256="1wm83m3cqd6llxb9p2jwim0wb81v84pgdmgcznygzaaq6kbn3n84"; depends=[mclust]; }; + mskcc_oncotree = derive2 { name="mskcc.oncotree"; version="0.1.0"; sha256="0d8w765wadhfidj1d256a0bh45xi1sf2vlbhxv1z5npvdhdhr6zp"; depends=[dplyr glue httr2 magrittr memoise purrr readr rlang tibble tidyjson tidyr]; }; msltrend = derive2 { name="msltrend"; version="1.0"; sha256="1rwy77ijf3hzq2zp47cijwvqcq34rdlfxwhrd9l56bvmlmzr1dqx"; depends=[changepoint forecast plyr Rssa tseries zoo]; }; msm = derive2 { name="msm"; version="1.6.9"; sha256="08vhazswyxr3y1zb9y60mbg3bappzlizxml8s08p65mh82xxkz5f"; depends=[expm mvtnorm survival]; }; msma = derive2 { name="msma"; version="2.2"; sha256="1p6lm07wlwyymhj2bpwn9kvxf6q2c6rf9554swnm8gkm1z82324f"; depends=[]; }; @@ -12992,7 +12701,7 @@ in with self; { mstclustering = derive2 { name="mstclustering"; version="1.0.0.0"; sha256="1m2hmjia3r5ph5zl2314kq8dmjggzvw3ad8cixjjd70hi8570fpw"; depends=[data_table reshape2]; }; mstherm = derive2 { name="mstherm"; version="0.4.7"; sha256="04jrp0w17svwmrvx356jmh04npbwhk9nvfy3r39vqr82yrvn6jip"; depends=[doParallel foreach nls2 plotrix RColorBrewer]; }; mstknnclust = derive2 { name="mstknnclust"; version="0.3.1"; sha256="0bg38gnaf2jjva8l2wk862ch2cpqvw7szvvvpb2bnz02fp795p3g"; depends=[igraph]; }; - mstrio = derive2 { name="mstrio"; version="11.3.0.1"; sha256="1qjqxrgy2amm0ikfixkqjix3d6jzh1y3abnbzq41ibl5qiz8pjxy"; depends=[crul data_table httr jsonlite openssl R6 rstudioapi shiny shinyjs]; }; + mstrio = derive2 { name="mstrio"; version="11.3.5.101"; sha256="103xpkcahp3rzw01yb1qmymavl40xzydmn0z6ya2mcxihzfdf2k3"; depends=[crul data_table httr jsonlite markdown openssl R6 rstudioapi shiny shinyjs vctrs]; }; msu = derive2 { name="msu"; version="0.0.1"; sha256="1vhh9725dbywmzihnmsq1jircpn91r8227j2f76fvma9rwss90p7"; depends=[entropy]; }; mt = derive2 { name="mt"; version="2.0-1.19"; sha256="184lksilj5q1bhlwsh850gm2qzjcpyaa4gj20r5m1smmhdcdwd1d"; depends=[class e1071 ellipse lattice latticeExtra MASS pls randomForest]; }; mtb = derive2 { name="mtb"; version="0.1.6"; sha256="1zqn9ng0axyhbdwp683hkqq19w0x18bf1lk2kxakmwgvpcs4h67d"; depends=[ggplot2 htmltools labeling scales]; }; @@ -13000,7 +12709,7 @@ in with self; { mthapower = derive2 { name="mthapower"; version="0.1.1"; sha256="0g6dn0qn7z6qc1gbzspy1n7b803427bc9fv5yqk7j8i1is1p8h94"; depends=[]; }; mtk = derive2 { name="mtk"; version="1.0"; sha256="0vq2xlxf86l92fl91qm8m4yfjyz1h8szmwxiics7sc9f0as0dkmy"; depends=[lhs rgl sensitivity stringr XML]; }; mtsdi = derive2 { name="mtsdi"; version="0.3.5"; sha256="0j4hl690n8x7zfpygw5qv0m0jyl8dnz1d3r4314w06h7c578n2kp"; depends=[gam]; }; - muHVT = derive2 { name="muHVT"; version="1.0.2"; sha256="02cdxf5f12l94c99drpnk9098zswzpv3n7q2klzaq97j1farpsfk"; depends=[conf_design deldir dplyr ggplot2 gtools Hmisc magrittr MASS plyr polyclip purrr rgeos sp splancs]; }; + muHVT = derive2 { name="muHVT"; version="2.0.0"; sha256="0zcmm2vjw1wak4xzfw3ikd94gd6knzm795183pl4vma0q0ll5bd2"; depends=[cluster conf_design deldir dplyr ggplot2 gtools Hmisc magrittr MASS patchwork plyr polyclip purrr reshape2 rgeos scales sp splancs tidyr tidyverse]; }; muRL = derive2 { name="muRL"; version="0.1-12"; sha256="1nzi0nyspva5ach0q0rvlljlfgmac8vxxggkwdzz1pr1cxhkprwd"; depends=[maps stringr]; }; muRty = derive2 { name="muRty"; version="0.3.1"; sha256="0v7wfb6347h4inf9jcbp6n4xfsqjzgj0i5sdfgqmbw0d5pcpnvhz"; depends=[clue lpSolve]; }; muStat = derive2 { name="muStat"; version="1.7.0"; sha256="18727xj9i9hcnpdfnl1b9wd6cp7wl1g74byqpda2gsrcardl57wz"; depends=[]; }; @@ -13015,7 +12724,7 @@ in with self; { mulset = derive2 { name="mulset"; version="1.0.0"; sha256="0pigiy6hfiqh6x4zx6zqn3ykk36s3abzzyb67jdlf4jzc5zhrl9g"; depends=[digest gtools]; }; multIntTestFunc = derive2 { name="multIntTestFunc"; version="0.1.1"; sha256="1psbjgg0dqd4nbmyja1mx4v1w0jqqhc67p7wqf1ipm93llv8sv6f"; depends=[gsl pracma]; }; multbxxc = derive2 { name="multbxxc"; version="1.0.1"; sha256="1ip5awjc2ljpy6nsr4y42x0yg4n7lyaxp9kzfjvwp41k9lriz4gm"; depends=[Rcpp RcppArmadillo rmumps]; }; - multcomp = derive2 { name="multcomp"; version="1.4-18"; sha256="01i8gjppyxl3xph1dw0kags8qbb7r06j91kk3lkqn5gzrxjmwyhh"; depends=[codetools mvtnorm sandwich survival TH_data]; }; + multcomp = derive2 { name="multcomp"; version="1.4-19"; sha256="0mz5wdqrqpp2gqijfpp9rgfbq8yvxki4is8fbbc4qwdwryqp6d7h"; depends=[codetools mvtnorm sandwich survival TH_data]; }; multcompView = derive2 { name="multcompView"; version="0.1-8"; sha256="1rfq9wvvrghq0542ff40wy8vdmsyd8spzz6ihcywcvxdfa8m6g8j"; depends=[]; }; multfisher = derive2 { name="multfisher"; version="1.1"; sha256="0vzvq7v2xz35fx8pg25c9xqkic09k6fcg9zh81j7pgqmzi2wwrp8"; depends=[]; }; multgee = derive2 { name="multgee"; version="1.8.0"; sha256="1cp3762901af93m0i3m61ngnxbwjirjg46mkdcj0ycmk7phh7bcc"; depends=[gnm Rcpp RcppArmadillo VGAM]; }; @@ -13030,7 +12739,7 @@ in with self; { multiROC = derive2 { name="multiROC"; version="1.1.1"; sha256="15ydbxpkdyvsc55di13jvwh9p6dzxc1yj93w1cwsd8jp2y10wsd3"; depends=[boot magrittr zoo]; }; multiUS = derive2 { name="multiUS"; version="1.1.0"; sha256="077qyqfbp2r5ah08biiswn4jg03h2jcvi0gij6h5wip16vr0d0yx"; depends=[gplots MASS]; }; multiband = derive2 { name="multiband"; version="0.1.0"; sha256="1f4gmy0yf9zid7kl05zncvvig6hs4nl1h9wkrkc24rxx9risw9k9"; depends=[]; }; - multibiplotGUI = derive2 { name="multibiplotGUI"; version="1.0"; sha256="0ig7r4p8mq594cjwclbqwjk8saqkvjqjbbnnxj1hc1sdj7qdlcpf"; depends=[cluster dendroextras Matrix rgl shapes tcltk2 tkrplot]; }; + multibiplotGUI = derive2 { name="multibiplotGUI"; version="1.1"; sha256="08vmdhrn6qqq57q818cqnmsw7qaa4gnw3m5myzp4dc85njgzzi02"; depends=[cluster dendroextras MASS Matrix plotrix rgl shapes tcltk2 tkrplot]; }; multiblock = derive2 { name="multiblock"; version="0.8.1"; sha256="1c7k5qkzh638xi07yknzjycsadkcnlrb6sdgq44nakna8ax4kdr2"; depends=[ade4 car FactoMineR geigen knitr lme4 MASS mixlm plotrix pls plsVarSel pracma progress r_jive Rcpp RcppEigen RegularizedSCA RGCCA RSpectra SSBtools]; }; multibridge = derive2 { name="multibridge"; version="1.1.0"; sha256="17xcngn6q2wgaxcspfigcvzp6zh2bq8vhmfb3gn9ryq1rf2fchfv"; depends=[Brobdingnag coda magrittr mvtnorm progress purrr Rcpp Rdpack stringr]; }; multicastR = derive2 { name="multicastR"; version="2.0.0"; sha256="0zxv3kxk8gh2fgllzzg7k625n3p4q5pr465ja0mhvs48m4n262l9"; depends=[]; }; @@ -13041,7 +12750,7 @@ in with self; { multicon = derive2 { name="multicon"; version="1.6"; sha256="16glkgnm4vlpxkhf1xw1gl1q10yavx9479i21v29lldag35z8pqx"; depends=[abind foreach mvtnorm psych sciplot]; }; multicool = derive2 { name="multicool"; version="0.1-12"; sha256="0djacq0irfqz4nlnx238kja73yvr1n5qybbfyl6bw1n6qgcjhza8"; depends=[Rcpp]; }; multicross = derive2 { name="multicross"; version="2.1.0"; sha256="17hk03wsms9ij6hp6dw77cvvngdb5i66is6pcl1q21pyp327zqi6"; depends=[crossmatch MASS Matrix nbpMatching]; }; - multid = derive2 { name="multid"; version="0.4.0"; sha256="14vp8k1iwn0s97p877bwzc4ng12kdhcr1zs3w35aaypa5d2khsyx"; depends=[dplyr emmeans glmnet lavaan lme4 pROC]; }; + multid = derive2 { name="multid"; version="0.5.0"; sha256="0q5nz4hlyp9j9ih2saaishfndqjnbc4vjk1dd7knan59w6ba4ywk"; depends=[dplyr emmeans glmnet lavaan lme4 pROC]; }; multidplyr = derive2 { name="multidplyr"; version="0.1.1"; sha256="1cc8p9l6nn6n3dvivqyn8pwj0wn2vz40jcbb38zkg109a4c06jbb"; depends=[callr crayon dplyr magrittr qs R6 rlang tibble tidyselect vctrs]; }; multifamm = derive2 { name="multifamm"; version="0.1.1"; sha256="09s6hnyi5x48yp97499zai7b959ylkk17zbbc6d8a71ynvfas8ir"; depends=[data_table funData MFPCA mgcv sparseFLMM zoo]; }; multifear = derive2 { name="multifear"; version="0.1.2"; sha256="15nxyb17qzwld3ngw5k60nsr5nnam09jc1ky87rvsvslj6f3v696"; depends=[BayesFactor bayestestR bootstrap broom dplyr effectsize effsize esc ez forestplot ggplot2 nlme purrr reshape2 stringr tibble]; }; @@ -13049,11 +12758,12 @@ in with self; { multigraph = derive2 { name="multigraph"; version="0.96"; sha256="1vk57cgmm7nigv6zmd9amwm3gddfpadkjr9blhckfla25n54h7r8"; depends=[multiplex]; }; multigraphr = derive2 { name="multigraphr"; version="0.1.0"; sha256="018kwpphwkpm07by7pvrwp5wvrasnpaxbs67pdrbfxzc139d15q9"; depends=[]; }; multigroup = derive2 { name="multigroup"; version="0.4.5"; sha256="1d3m2c3md9iiv1gfqfyik1xj3fsas85bmf2vbkaks8ljxa42f55k"; depends=[MASS]; }; + multilateral = derive2 { name="multilateral"; version="1.0.0"; sha256="13zp2357vqaj09m6af8gzjgf74983icikbnn11z18r8c3wb5kngy"; depends=[assertive data_table fastmatch MatrixModels yaml]; }; multilaterals = derive2 { name="multilaterals"; version="1.0"; sha256="11zfdhn6qzqz0n31g23bn40wnfzkjndb753iiqvihirphzb74v5v"; depends=[ape igraph]; }; multilevel = derive2 { name="multilevel"; version="2.7"; sha256="0ds7q3q2ncldb4iik24xisyxyyv1yv8l1yz7zd7cy036bna1yp5i"; depends=[MASS nlme]; }; multilevelPSA = derive2 { name="multilevelPSA"; version="1.2.5"; sha256="0926jaicdxk846vyfphb2hyg3zan3wal44x1bwamws0zf4flc4hj"; depends=[ggplot2 MASS party plyr PSAgraphics psych reshape xtable]; }; multilevelTools = derive2 { name="multilevelTools"; version="0.1.1"; sha256="01fzx7j0mkb4fr7axv34184w6w5nfsdcr51nscci1mi5b2805x1s"; depends=[cowplot data_table extraoperators ggplot2 JWileymisc lavaan lme4 lmerTest nlme zoo]; }; - multilevelmod = derive2 { name="multilevelmod"; version="0.1.0"; sha256="1nqm072rsgdpwrad50k4ry1vjq5749x6a2nmfvmh4nds1zhrja6m"; depends=[dplyr lme4 parsnip purrr rlang tibble withr]; }; + multilevelmod = derive2 { name="multilevelmod"; version="0.2.0"; sha256="0zw4a3c52mmrbcshrp88w9a96p95csabmhh3zpl5sm83wyfrwvmq"; depends=[dplyr lme4 parsnip purrr rlang tibble withr]; }; multilinguer = derive2 { name="multilinguer"; version="0.2.2"; sha256="1i8c3sz6h42nca13ycjkmsmjbg8lj1xhkvyga97lp2wgkrrywpwb"; depends=[askpass rappdirs sys usethis]; }; multimark = derive2 { name="multimark"; version="2.1.4"; sha256="1x194h1jzxm3va933vqqk0qdg7pgrc5hqwdd1bwh0sjavygwanqz"; depends=[Brobdingnag coda Matrix mvtnorm prodlim raster RMark sp statmod]; }; multimode = derive2 { name="multimode"; version="1.5"; sha256="0qxb67qss2pmid0wiwblqng5qmihqchdhbkyjklgj20pvbjz1wjm"; depends=[diptest ks rootSolve]; }; @@ -13061,7 +12771,6 @@ in with self; { multinet = derive2 { name="multinet"; version="4.0.1"; sha256="0j4hdw47vf5rkd4vqr6bs5740h17kvw7208a434q0ms2vlmm40cg"; depends=[igraph RColorBrewer Rcpp]; }; multinets = derive2 { name="multinets"; version="0.2.2"; sha256="1i5jsq1xy0g0l5d1z3hz4gj6inj4rhd6lf2s5xzd5k8ccp5aba8c"; depends=[igraph Rcpp]; }; multinma = derive2 { name="multinma"; version="0.4.2"; sha256="128p2a20kcdkqv9zq4i9hiy9fyqasmrfz162yz00fmyxkp50g63a"; depends=[bayesplot BH copula dplyr forcats ggdist ggplot2 ggraph glue igraph Matrix purrr randtoolbox Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools StanHeaders stringr tibble tidyr truncdist]; }; - multinomRob = derive2 { name="multinomRob"; version="1.8-6.1"; sha256="1fdjfk77a79fy7jczhpd2jlbyj6dyscl1w95g64jwxiq4hsix9s6"; depends=[MASS mvtnorm rgenoud]; }; multinomineq = derive2 { name="multinomineq"; version="0.2.3"; sha256="0hf3sv8gmdga7grina97wsya3d1cvb63h2j0sv6s10k9ccpv0ysn"; depends=[coda quadprog Rcpp RcppArmadillo RcppProgress RcppXPtrUtils Rglpk]; }; multipanelfigure = derive2 { name="multipanelfigure"; version="2.1.2"; sha256="0cm5bd7k0fx6d3gybcll6vvh14byanyk6dj4civqij7psa48iagc"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types ggplot2 gridGraphics gtable magick magrittr stringi]; }; multipleNCC = derive2 { name="multipleNCC"; version="1.2-2"; sha256="0bnc14l5b3x68qnwf3ma8wrclmp6n7fxsc0sbd7cfaayhp8dzcb1"; depends=[mgcv survival]; }; @@ -13072,32 +12781,29 @@ in with self; { multiridge = derive2 { name="multiridge"; version="1.9"; sha256="1z77gabrm8dpyp4fssh1rqw58y1fspp5ypv2xybwr7k3fbvyd1vg"; depends=[mgcv pROC risksetROC snowfall survival]; }; multiselect = derive2 { name="multiselect"; version="0.1.0"; sha256="1cda38zq7c1r56wdfpr5dg0jfw4kzi9p7jq59qm04j461j9ag3q6"; depends=[Hmisc]; }; multisensi = derive2 { name="multisensi"; version="2.1-1"; sha256="0f8i1jvrnmdsws5w7fz9k5pb5yfl5b9hnfd8aq4zj1r6m90kb6sz"; depends=[knitr sensitivity]; }; - multisite_accuracy = derive2 { name="multisite.accuracy"; version="1.0"; sha256="1mhj8xsysqvyx823hjacsy1k9kmi7z13cwkjk42gz9a95dvlilm6"; depends=[AROC coxme lme4 lmerTest logistf metafor pROC survival]; }; + multisite_accuracy = derive2 { name="multisite.accuracy"; version="1.1"; sha256="0fx28nhmbs7nna328sf3l4sx6nrv243b60sr406ga0137c9d5nag"; depends=[AROC coxme lme4 lmerTest logistf metafor pROC survival]; }; multisom = derive2 { name="multisom"; version="1.3"; sha256="0msxmrj4iawxg4vf4r7kj26zalxz4di2w4nxgxiakiig4g4ggy9z"; depends=[class kohonen]; }; - multispatialCCM = derive2 { name="multispatialCCM"; version="1.0"; sha256="1fzd91w10iln8qb81z240lq3fi4gq22l4rh9npkav6fiq6g6rlp8"; depends=[]; }; + multispatialCCM = derive2 { name="multispatialCCM"; version="1.2"; sha256="168shygdy2x7ww365hdb0f5pkq0b5w3gwcwpgnlzncj4jxd6pf4c"; depends=[]; }; multitaper = derive2 { name="multitaper"; version="1.0-15"; sha256="1gm3wr8xqpqiby7q1dr3zxim77v0bvvrqi0hlazf5g3gnkrp2zc3"; depends=[]; }; multivar = derive2 { name="multivar"; version="1.0.0"; sha256="0lw7jisq7933za4y8hvalgzhvfm1ai50mhls5fvrjyk87f45y7cn"; depends=[ggplot2 MASS Matrix Rcpp RcppArmadillo reshape2 vars]; }; multivariance = derive2 { name="multivariance"; version="2.4.1"; sha256="1jbv1rhdy6jgvyhwz25hry3xmnxfsl8pwf0j4rj9r8rg6ik8rv1w"; depends=[igraph microbenchmark Rcpp]; }; multivator = derive2 { name="multivator"; version="1.1-10"; sha256="1a469mhskkk2gx0j14f38fn0wdbfygl3psb0mnp7ckznhmh4w2lg"; depends=[emulator mathjaxr mvtnorm]; }; multiverse = derive2 { name="multiverse"; version="0.5.0"; sha256="1mffmcbc5l4753dj7h9h82gf76xbigrbb5lbwjr5ycpcyzcpsldk"; depends=[berryFunctions collections dplyr evaluate formatR knitr magrittr purrr R6 rlang rstudioapi tibble tidyr tidyselect]; }; multiversion = derive2 { name="multiversion"; version="0.3.6"; sha256="1gcr4p2kwyyi1skkq1b5ian0flfviyrhh14i66jajyc2qdxfqfic"; depends=[]; }; - multiviewtest = derive2 { name="multiviewtest"; version="2.0.1"; sha256="1jnb9l9nqnciczgxy9k7fq66rycbq0gr4sjdc2ck274jisj5bbaq"; depends=[doParallel foreach irlba Matrix matrixStats mclust randnet]; }; multiwave = derive2 { name="multiwave"; version="1.4"; sha256="19581kjcyw86cnzhvhhpn997fixm811ggmvb8jkb3dsxg8vp60jc"; depends=[]; }; multiway = derive2 { name="multiway"; version="1.0-6"; sha256="1y9cykarr2aysdrnyab5aklsrc5id5b58881q03lcb5kc385v3gv"; depends=[CMLS]; }; multiwayvcov = derive2 { name="multiwayvcov"; version="1.2.3"; sha256="1znsmca16jac8s5z0j64cck27pvf88anm1mfblabqchqqcz1ykfc"; depends=[boot sandwich]; }; multxpert = derive2 { name="multxpert"; version="0.1.1"; sha256="1lq5lgdjaaacipkjqxz6jxsm6b8zfbjsf7rs135a7n6w7qh35pvw"; depends=[mvtnorm]; }; - muma = derive2 { name="muma"; version="1.4"; sha256="0midx3wzyvcz8rk9kvsfll3xg41pkz40si4jw2ps54ykkf9rkm99"; depends=[bitops car caTools gplots gtools mvtnorm pcaPP pdist pls robustbase rrcov]; }; mumm = derive2 { name="mumm"; version="0.2.1"; sha256="1wjg2pqn2wb9hk9mqgpi3k26qwjnkmp4apx09lxcwrz35bbwhfzv"; depends=[lme4 Matrix Rcpp RcppEigen stringr TMB]; }; munfold = derive2 { name="munfold"; version="0.3.5"; sha256="17zizx9r0f8dxb7dkgn1nn0fp7ydy6r155p1zfz0v93jc26lc1hb"; depends=[MASS memisc]; }; munsell = derive2 { name="munsell"; version="0.5.0"; sha256="16g1fzisbpqb15yh3pqf3iia4csppva5dnv1z88x9dg263xskwyh"; depends=[colorspace]; }; - munsellinterpol = derive2 { name="munsellinterpol"; version="2.8-2"; sha256="0ypvlfzvy0kv9ih0w0h5f5jnljlhgp7nj08rlp6hafajbhqp6k1y"; depends=[rootSolve spacesRGB spacesXYZ]; }; + munsellinterpol = derive2 { name="munsellinterpol"; version="3.0-0"; sha256="15314dr42sikw8i1qdi5rw8r52whgxsda6m2jbldxdc67vlwmcwd"; depends=[rootSolve spacesRGB spacesXYZ]; }; murphydiagram = derive2 { name="murphydiagram"; version="0.12.2"; sha256="0f699cdfsl4f9w9f18cxkdlq1vyhsv83ynl6ck0r3wwh8f1zsmnd"; depends=[]; }; musclesyneRgies = derive2 { name="musclesyneRgies"; version="1.1.3"; sha256="12cmxavj6k08pbk0ywmip1wph5jgq9y1ghj0dwq177sf8icmy9l6"; depends=[FNN ggplot2 gridExtra gtools plyr proxy reshape2 signal umap]; }; music = derive2 { name="music"; version="0.1.1"; sha256="04ygmlga7i8bpxcrlmj8wc956asf73krghga6fnh2flm675dp42f"; depends=[audio crayon]; }; musicNMR = derive2 { name="musicNMR"; version="0.0.2"; sha256="09xxc78ajk428yc3617jfxqp5fy89nfc24f1rig6cw28fflwqj0k"; depends=[seewave]; }; musica = derive2 { name="musica"; version="0.1.3"; sha256="0cfzfar706l0xdb0n11m18mayj5rrplvf4qry36vgxsiaxcba90r"; depends=[data_table lubridate magrittr qmap]; }; mustashe = derive2 { name="mustashe"; version="0.1.4"; sha256="1rj5vh8bi88c0q4gq2lvbqcg3k63z8pgwylqli8zyq9xb3argab1"; depends=[digest formatR here qs tibble]; }; - mut = derive2 { name="mut"; version="1.1"; sha256="0v0vviarsmaiap3fa82ia01cblana65fd3cbj7jkd3aral6pm6yz"; depends=[expm Familias IBDsim paramlink]; }; mutSignatures = derive2 { name="mutSignatures"; version="2.1.1"; sha256="0skw92633mwckkkgkncfv09wvnr910nf4wdbqz0a61cl7mxlsr25"; depends=[cluster doParallel foreach ggplot2 pracma proxy]; }; mutoss = derive2 { name="mutoss"; version="0.1-12"; sha256="1yk7p7pb2xm38d3j19ysgwmix48lvimbhkhjjwk5jmr1a0ysx298"; depends=[multcomp multtest mvtnorm plotrix]; }; mutossGUI = derive2 { name="mutossGUI"; version="0.1-11"; sha256="08pcca9gzns83az6jbjzv4xhm1wgmchhzz4f54x1aq0nmvsz3qq1"; depends=[CommonJavaJars JavaGD JGR multcomp mutoss plotrix rJava]; }; @@ -13105,18 +12811,17 @@ in with self; { mvGPS = derive2 { name="mvGPS"; version="1.2.2"; sha256="1aanrv84c012ijyqql0pw2qlckrpv3wmfv16yhr465xb3rkzz4vj"; depends=[CBPS cobalt gbm geometry MASS matrixNormal Rdpack sp WeightIt]; }; mvLSW = derive2 { name="mvLSW"; version="1.2.4"; sha256="04x0b8b7r4lmpmxvjckbvixd34nxjmj13in1gwdhf6gzn2k7p830"; depends=[fields wavethresh xts zoo]; }; mvMISE = derive2 { name="mvMISE"; version="1.0"; sha256="0lnc5g3ksl5cvwylh8p8baxyvq3z32a2i337q7lhg00j031ccy5c"; depends=[lme4 MASS]; }; - mvMORPH = derive2 { name="mvMORPH"; version="1.1.4"; sha256="0dxqi9ml49hzpdgb03fqk1af8rirdcgi5pwil87c89g638c37nrq"; depends=[ape corpcor glassoFast pbmcapply phytools spam subplex]; }; - mvMonitoring = derive2 { name="mvMonitoring"; version="0.1.0"; sha256="03nvq8nmrmrpzyxlsqzww5ghk640115l1jgmgwfahhjxkdpkzfxx"; depends=[BMS dplyr lazyeval plyr rlang robustbase xts zoo]; }; + mvMORPH = derive2 { name="mvMORPH"; version="1.1.6"; sha256="07hnpbc108x693wwx976ixi08q1n0siyz4ccv7024syrzf70ggxc"; depends=[ape corpcor glassoFast pbmcapply phytools spam subplex]; }; + mvMonitoring = derive2 { name="mvMonitoring"; version="0.2.0"; sha256="0nfkcbi29fprz3mb7rrnn2rvixi4wmfmdsfsw219hj21vafk1bqz"; depends=[dplyr lazyeval plyr rlang robustbase xts zoo]; }; mvPot = derive2 { name="mvPot"; version="0.1.5"; sha256="18kzlz42ridmwjrai6f598vvhmvk7gwyp869qjqclbf9jpc1xlcx"; depends=[evd gmp MASS numbers]; }; mvProbit = derive2 { name="mvProbit"; version="0.1-10"; sha256="1iy249mc5fi72l0lcvjrn40fn6q1m8hj8njcl0li2z6lzydifkd4"; depends=[abind bayesm maxLik miscTools mvtnorm]; }; mvQuad = derive2 { name="mvQuad"; version="1.0-6"; sha256="016477dhjdkqiadc631vzpbp967mn4yli6by3s1k348mlfirwsi3"; depends=[data_table statmod]; }; - mvSLOUCH = derive2 { name="mvSLOUCH"; version="2.7.3"; sha256="1f048j48mv654n8yswvlj9q4rr2kpyi4b4mibg28cspayidq9yyc"; depends=[abind ape Matrix matrixcalc mvtnorm ouch PCMBase TreeSim]; }; + mvSLOUCH = derive2 { name="mvSLOUCH"; version="2.7.4"; sha256="0jjrfsg04hmc1yr3x8q431g5rpakhbnvsh2lr35lp6603xcpc57l"; depends=[abind ape Matrix matrixcalc mvtnorm ouch PCMBase]; }; mvShapiroTest = derive2 { name="mvShapiroTest"; version="1.0"; sha256="0zcv5l28gwipkmymk12l4wcj9v047pr8k8q5avljdrs2a37f74v1"; depends=[]; }; mvabund = derive2 { name="mvabund"; version="4.2.1"; sha256="01kss9dx4an1ir5zs46jypvhj8sdc8wcs00i1223ai09av4lcsgd"; depends=[MASS Rcpp RcppGSL statmod tweedie]; }; mvbutils = derive2 { name="mvbutils"; version="2.8.232"; sha256="0awd0jy492ha321c20kmmgl20kqphdmrmswakc0rq6h8z9d55kdg"; depends=[]; }; mvc = derive2 { name="mvc"; version="1.3"; sha256="0kmh6vp7c2y9jf71f4a29b0fxcl0h7m4p8wig4dk3fi7alhjf7ym"; depends=[rattle]; }; mvctm = derive2 { name="mvctm"; version="1.2"; sha256="0810bmk748cvbls4djspqvkk65j605djqicqg4rkwy2a799l3rgc"; depends=[Formula MNM nlme quantreg Rfit SpatialNP]; }; - mvdalab = derive2 { name="mvdalab"; version="1.6"; sha256="0i4hhm9bkp13j8cy6fspdn619d00jh615njwr49rwzgjyj418k6l"; depends=[car dummies ggplot2 MASS moments penalized plyr reshape2 sn]; }; mvgb = derive2 { name="mvgb"; version="0.0.2"; sha256="06sk2izii94zcq0gjgrw71bam9scyvs745riaaxg2a88yzc3sl2h"; depends=[]; }; mvglmmRank = derive2 { name="mvglmmRank"; version="1.2-2"; sha256="00zxqby8syb959fqgw9i7b0yamgjwddq32jlin6qmnzys5bg1556"; depends=[MASS Matrix numDeriv]; }; mvinfluence = derive2 { name="mvinfluence"; version="0.8-3"; sha256="0nygsldkm61ny5ljcc1r667rywj239j4x59ssi81cb2005kkjgm5"; depends=[car heplots]; }; @@ -13128,28 +12833,26 @@ in with self; { mvngGrAd = derive2 { name="mvngGrAd"; version="0.1.5"; sha256="0ir4pakfb2jq84rbfqix6rph8q6cgadjdn49rrdl4439b8hlsg8k"; depends=[]; }; mvnormalTest = derive2 { name="mvnormalTest"; version="1.0.0"; sha256="1hbapcmj1rzrdzlbkay94f3r2388sk60zizh48vbbkc83qlm7xbr"; depends=[copula moments nortest]; }; mvnormtest = derive2 { name="mvnormtest"; version="0.1-9"; sha256="1iaxjwp7bgxhaa4xqvgqb61316mq2fb0452d0pabhmbxkvmvdnj6"; depends=[]; }; - mvnpermute = derive2 { name="mvnpermute"; version="1.0.0"; sha256="0mbyj5i5vysrnl3pgypl0cjf3sylsvzfl1pcxkn0q16560vqh2ba"; depends=[]; }; + mvnpermute = derive2 { name="mvnpermute"; version="1.0.1"; sha256="0jszhq2mfqm7k7zvmn1m286gnafpng6ybmvmwzmzzwla9f7sacjx"; depends=[]; }; mvord = derive2 { name="mvord"; version="1.1.1"; sha256="0flqdsjigv8c6ygiih17kp22yrbs2wqydadqi5ij145a6r8bpkml"; depends=[BB dfoptim MASS Matrix minqa mnormt numDeriv optimx pbivnorm ucminf]; }; mvoutlier = derive2 { name="mvoutlier"; version="2.1.1"; sha256="1ll6zsy8svcsb3h60p0z2zpbgn919j9w0mamsdvvzi87dyy4hars"; depends=[robustbase sgeostat]; }; mvp = derive2 { name="mvp"; version="1.0-12"; sha256="135v24hjg9zgnl6k27jvcgxflqhjrmdkp3p2nda3izfvlvxijr0h"; depends=[digest disordR magic magrittr mpoly partitions Rcpp]; }; mvpd = derive2 { name="mvpd"; version="0.0.2"; sha256="0xrrsq3b96cgcapam62nz80xm6hfmi2z9gbjbwww0mki0rvfscha"; depends=[cubature libstableR Matrix matrixStats mvtnorm stabledist]; }; - mvprpb = derive2 { name="mvprpb"; version="1.0.4"; sha256="1kcjynz9s7vrvcgjb9sbqv7g50yiymbpkpg6ci34wznd33f7nrxm"; depends=[]; }; mvrsquared = derive2 { name="mvrsquared"; version="0.1.2"; sha256="1x9ck55b5fiakvbn2nr3h75ksawjaijm2bg1xqavncl3cvlfqahl"; depends=[Matrix Rcpp RcppArmadillo RcppThread]; }; mvrtn = derive2 { name="mvrtn"; version="1.0"; sha256="0k0k76wk5zq0cjydncsrb60rdhmb58mlf7zhclhaqmli1cy697k8"; depends=[]; }; mvtmeta = derive2 { name="mvtmeta"; version="1.1"; sha256="0s0s5922c5rs8cqk100nci3akqnhbvibm2n2gn8049v3qcyfajyb"; depends=[gtools]; }; mvtnorm = derive2 { name="mvtnorm"; version="1.1-3"; sha256="0j14q2bkc14v35s5k03sw44zsssrd2qjljlwzj014qxs74hk0kpz"; depends=[]; }; - mvtsplot = derive2 { name="mvtsplot"; version="1.0-1"; sha256="0g5grrha77rsnkfasw5pxnpmkl7vgb728ms8apyg8xnbmgilg9vv"; depends=[RColorBrewer]; }; + mvtsplot = derive2 { name="mvtsplot"; version="1.0-4"; sha256="1391m4r58hbaqbq46isi15jx6vhx7frdspbs1ippbpw7rsanch9w"; depends=[RColorBrewer]; }; mwTensor = derive2 { name="mwTensor"; version="0.99.5"; sha256="11zn2g1gxl1x6ci3wqkr7a37jwc4rdcbgdagy5gf3jgkmmr5an3w"; depends=[ccTensor ica igraph MASS nnTensor rTensor]; }; + mwa = derive2 { name="mwa"; version="0.4.4"; sha256="0f994xpylqhhwwr3rv0y5y68989ssy7q4pb3hawq0ww0l3wj9lmd"; depends=[cem MASS rJava]; }; mwcsr = derive2 { name="mwcsr"; version="0.1.2"; sha256="1s7l3id3yashmscdd1kdcw1i4agpd6z12c7wxj18h3g2c82s7ad6"; depends=[igraph Rcpp]; }; mwshiny = derive2 { name="mwshiny"; version="2.1.0"; sha256="0c1a0d9qnaszffhzanmk31mdxqi7j3rn6bk7a3dwg4bq1da3rlgl"; depends=[htmltools shiny]; }; mxkssd = derive2 { name="mxkssd"; version="1.2"; sha256="19zz5y5gz84a7qicaj3v2j6l558vr6w8lcy67b3kmkq64mnnirda"; depends=[]; }; mxmmod = derive2 { name="mxmmod"; version="1.1.0"; sha256="0x4m6y4ngb3vm9xpvwvn1zcbch2fhz8pb267hg2sb3kk5m504xxq"; depends=[OpenMx]; }; mxnorm = derive2 { name="mxnorm"; version="1.0.1"; sha256="0crqzbxvb459pzi6znhm06irfs09f1nsy0r1lnglzi7v1r5sh9n0"; depends=[caret data_table dplyr e1071 fda fossil ggplot2 glue KernSmooth kSamples lme4 magrittr psych reticulate rlang stringr tidyr uwot]; }; myTAI = derive2 { name="myTAI"; version="0.9.3"; sha256="0fd6srvwzqir8zif56cnyi02c952fgc67xzc17wn7xvmvljfvh4x"; depends=[cpp11 doParallel dplyr edgeR fitdistrplus foreach ggplot2 gridExtra nortest RColorBrewer Rcpp RcppArmadillo readr reshape2 scales taxize tibble]; }; - mycobacrvR = derive2 { name="mycobacrvR"; version="1.0"; sha256="1xd9ackzdd8db6bayza0bg4n256mi9rdqih0cdc0nl212c3iz75g"; depends=[]; }; + mycobacrvR = derive2 { name="mycobacrvR"; version="1.1"; sha256="1hrn2v6wvw8xllqd1bhxb50hj9icinfrar6k9jgl0wjcsn024fc1"; depends=[]; }; mycor = derive2 { name="mycor"; version="0.1.1"; sha256="00hqmvga22bv43833s974s7ky7lbry3r2bb5kza7kvkn1p6773rg"; depends=[lattice]; }; - myepisodes = derive2 { name="myepisodes"; version="1.1.1"; sha256="0xk9bwgpl630nhc8qa2pc0rwqbqk3haxnp78gfxq6sn6z7i44k1p"; depends=[XML]; }; - mztwinreg = derive2 { name="mztwinreg"; version="1.0-1"; sha256="1rg6ikaqdrc7q44s3r3km8h45prnvcpzpxd7nxbmh209iz9j19ai"; depends=[mclogit rms]; }; n1qn1 = derive2 { name="n1qn1"; version="6.0.1-10"; sha256="1diwhw636cnwjlw291vfp1z53xaxhmhafbqfzk2m0yqs0ih0pm09"; depends=[Rcpp RcppArmadillo]; }; nCDunnett = derive2 { name="nCDunnett"; version="1.1.0"; sha256="0q2db1pixqr0wbx4bd05c98i1p0vgaqsfa1iwjxr08c62a5xhkks"; depends=[]; }; nCopula = derive2 { name="nCopula"; version="0.1.1"; sha256="03qbfvx0lg9prg52fk1jxar2bng2x6scac4g2c64kvp6vmf6x4mv"; depends=[copula Deriv stringi stringr]; }; @@ -13169,12 +12872,12 @@ in with self; { naivereg = derive2 { name="naivereg"; version="1.0.5"; sha256="1cxfl419pp7xh1xrad29gvpn6hm0rhk40vylj97ypndh6gmnynzz"; depends=[glmnet gmm grpreg ncvreg]; }; nakagami = derive2 { name="nakagami"; version="1.1.0"; sha256="0bxsg5k51x7qrw34l16da79ck212drkgvzgn9d5zanx5dwv5asl2"; depends=[assertthat]; }; namedCapture = derive2 { name="namedCapture"; version="2020.4.1"; sha256="0zdw3h3n4qjv9cpidb3g523ld6rrh49l2c1yhfqhk5wb7vddrs46"; depends=[]; }; - namedropR = derive2 { name="namedropR"; version="2.2.3"; sha256="08280hsb23pvjr0zrgfjmgmr4jiasrv0lbkjp92lwhkaljlhrpfy"; depends=[bib2df dplyr here htmltools lubridate qrcode readr webshot]; }; + namedropR = derive2 { name="namedropR"; version="2.3.2"; sha256="1xkjvs258ffrk0r4n272yq91rwb91qy6d0fqqcavjv1nlg93k09k"; depends=[bib2df dplyr here htmltools lubridate qrcode readr stringr webshot]; }; namespace = derive2 { name="namespace"; version="0.9.1"; sha256="1bsx5q19l7m3q2qys87izvq06zgb22b7hqblx0spkvzgiiwlq236"; depends=[]; }; nametagger = derive2 { name="nametagger"; version="0.1.1"; sha256="17g8y7x83p1pkgj5hgildndchxsp70va25h93p7r1yjllm56zqv8"; depends=[Rcpp]; }; nandb = derive2 { name="nandb"; version="2.1.0"; sha256="1rbn4nibjzvwpccpmqn84w9a167f1avyl18kjlapy5dhafvixgbz"; depends=[assertthat autothresholdr BBmisc checkmate detrendr dplyr filesstrings ggplot2 glue ijtiff magrittr purrr Rcpp reshape2 rlang stringr viridis withr]; }; naniar = derive2 { name="naniar"; version="0.6.1"; sha256="0l3l2x85v3srilww483kpgp4zlwixyml257b0cqly8kcpwawlinm"; depends=[dplyr forcats ggplot2 glue magrittr norm purrr rlang tibble tidyr UpSetR viridis visdat]; }; - nanonext = derive2 { name="nanonext"; version="0.3.0"; sha256="1hs0rw9lz4yry39pcq4fp9h5kqk0apqhgwahc2ww3gkhshwkck60"; depends=[]; }; + nanonext = derive2 { name="nanonext"; version="0.5.0"; sha256="1mfl94pyl4mr54irhbgr0k89qzckh8cnpdkimnwfqp2fpvzsvfcw"; depends=[]; }; nanop = derive2 { name="nanop"; version="2.0-6"; sha256="007gdc93pk0vpfmsw7zgfma2k1045n2cxwwsyy276smy0ys9fdhp"; depends=[distrEx rgl]; }; nanostringr = derive2 { name="nanostringr"; version="0.2.0"; sha256="13rcc33zfqlx8m5bmr5hh87gp0g5wlg2cwlj1683kw9adj2y3fdf"; depends=[assertthat ccaPP dplyr epiR magrittr purrr rlang]; }; nanotime = derive2 { name="nanotime"; version="0.3.6"; sha256="1pv8hlw76n7qqrmw9lirjgg0zlp7ffy367ndca3sra8wn5f1lxfz"; depends=[bit64 Rcpp RcppCCTZ RcppDate zoo]; }; @@ -13182,7 +12885,7 @@ in with self; { nardl = derive2 { name="nardl"; version="0.1.6"; sha256="1vf8im4zs4j0v3k617aaskq9n2fg8sn3j5bllcbz2ircrpijr21m"; depends=[car Formula gtools MASS strucchange tseries]; }; narray = derive2 { name="narray"; version="0.4.1.1"; sha256="1xyyn6v3khk5x759fr9h96z036hbb87fzfqgdpw907bc95gjnkz9"; depends=[progress stringr]; }; nasadata = derive2 { name="nasadata"; version="0.9.0"; sha256="0y88qdy8c1y0prsajxic5vdqfixv9knjsbhw3vbfac8wv3a69bjl"; depends=[dplyr jsonlite plyr png]; }; - nasapower = derive2 { name="nasapower"; version="4.0.6"; sha256="0pz0v4waipd52saq92fws1xlh3fcal1q4dpcdspnp78n6z3nsxjc"; depends=[crul jsonlite lubridate readr tibble]; }; + nasapower = derive2 { name="nasapower"; version="4.0.7"; sha256="00wgx5syq6l3gj7wjiz25gl6cwbqjlvpm3n6c3w7flk7q0yb5mc3"; depends=[crul jsonlite lubridate readr tibble]; }; nasaweather = derive2 { name="nasaweather"; version="0.1"; sha256="05pqrsf2vmkzc7l4jvvqbi8wf9f46854y73q2gilag62s85vm9xb"; depends=[]; }; naspaclust = derive2 { name="naspaclust"; version="0.2.1"; sha256="1p4ilv2z5140h4kdix2w1v32vz1n8v33wq0fhc8n8mi7baknhd1i"; depends=[beepr rdist Rdpack stabledist]; }; nat = derive2 { name="nat"; version="1.8.19"; sha256="10w7y7n8kx34z6p0nhar60n9cjp9y69kh77zi9izkmafx0m9qn64"; depends=[digest filehash igraph nabor nat_utils plyr rgl yaml]; }; @@ -13193,13 +12896,14 @@ in with self; { natmanager = derive2 { name="natmanager"; version="0.4.8"; sha256="19vrdxyk8p3ps0pamyihfzxivfhm2k40g1a0k03vb6jfy544ps3i"; depends=[curl gh remotes usethis withr]; }; natserv = derive2 { name="natserv"; version="1.0.0"; sha256="1j6m0fddrhq36qfjmj99zs77vxk5waqkshxi37pr2ccnis9hzy9h"; depends=[crul jsonlite tibble]; }; natstrat = derive2 { name="natstrat"; version="2.0.0"; sha256="1i3qjd787clbafpkjd0mkp6i540061q9xl9kxlgh9f517ksg8zpz"; depends=[caret ggplot2 plyr pps ramify Rglpk rlang sampling slam]; }; - naturaList = derive2 { name="naturaList"; version="0.4.2"; sha256="03a5gbp5hv93p6y9ribagzs5q94c5v54j20zmg306irnp8n58iqy"; depends=[dplyr fasterize htmltools leaflet leaflet_extras magrittr raster rlang sf shiny shinydashboard shinyWidgets sp stringr tidytext vegan]; }; + naturaList = derive2 { name="naturaList"; version="0.5.0"; sha256="15kpv73a5bcjhnqp2q6fbw3wdwr3f1zijvaj60hybxv652p8b71f"; depends=[dplyr fasterize htmltools leaflet leaflet_extras magrittr raster rlang sf shiny shinydashboard shinyWidgets sp stringr tidytext vegan]; }; natural = derive2 { name="natural"; version="0.9.0"; sha256="0zxwbf3gg2h0bhl2w0md3rd162vlsgg0dv3187hc0ax7333cc4cx"; depends=[glmnet Matrix]; }; naturalsort = derive2 { name="naturalsort"; version="0.1.3"; sha256="0mz801y9mzld9ypp3xmsjw2d8l9q97sdnv09wrci9xi3yg2sjf6d"; depends=[]; }; - navigatr = derive2 { name="navigatr"; version="0.1.1"; sha256="0yy3vj3r7lgi9k930nb8cnlrwcc0vg73szkdcmmsy8bj98d0gb3s"; depends=[cli dplyr pillar purrr rlang tidyselect vctrs]; }; + navigatr = derive2 { name="navigatr"; version="0.1.2"; sha256="05gmi2i15gfz2sjkxrfdypih7wzqnw439l8glkc1zci0clk0qwkw"; depends=[cli dplyr pillar purrr rlang tidyselect vctrs]; }; nawtilus = derive2 { name="nawtilus"; version="0.1.4"; sha256="1agqx9wiiypkpjrwahwlw5qkvqgkh01swyzc75csf9698x0779pm"; depends=[MASS]; }; nbTransmission = derive2 { name="nbTransmission"; version="1.1.2"; sha256="0vaj2zfyvm2vm1ly1419ysxxrqkv73802n96ifajknh1pair31zk"; depends=[caret dplyr lubridate poisbinom rlang tidyr]; }; nbapalettes = derive2 { name="nbapalettes"; version="0.1.0"; sha256="1wrh2qcm90fcybhcc8wvs2s4a4z8y3mrhc28dvrkwynqwzsbalzs"; depends=[dplyr]; }; + nbc4va = derive2 { name="nbc4va"; version="1.2"; sha256="1xf9nmaycxs1d8xz30lciflhqjfyyx72gaa05kssqnlv90f5cy08"; depends=[shiny]; }; nbconvertR = derive2 { name="nbconvertR"; version="1.3.2"; sha256="0yhmz177r1miain65vspclahhz8cg7638ldbpsw8ylgf7a60l0sg"; depends=[]; }; nberwp = derive2 { name="nberwp"; version="1.2.0"; sha256="0v1y51rmm0h3w0v5y97wprhdhyc14r4iprdpkmdh8q9ajj1ds1c0"; depends=[]; }; nbfar = derive2 { name="nbfar"; version="0.1"; sha256="1gr9q83ff950x2lcyv9apsnjah4kpi8805mci9m0s3gvr7llpjq4"; depends=[glmnet magrittr MASS mpath Rcpp RcppArmadillo RcppParallel rrpack]; }; @@ -13213,8 +12917,7 @@ in with self; { ncdf4_helpers = derive2 { name="ncdf4.helpers"; version="0.3-6"; sha256="0qnm41rbxb6v7aqh1mdkjhcc2rhs4wg6wmrllldzd99mzz8slv1r"; depends=[abind ncdf4 PCICt]; }; ncdfgeom = derive2 { name="ncdfgeom"; version="1.1.1"; sha256="173hfbvp6pzyxmy0xwir02nmhifmfzl6jipn5pp41c947gyg8vwx"; depends=[dplyr ncmeta RNetCDF sf]; }; ncdump = derive2 { name="ncdump"; version="0.0.3"; sha256="09g98mzpky32z41jf23ahzhyv34l34y1gqq99j2hl4pqlvvhxs9i"; depends=[dplyr ncdf4]; }; - ncf = derive2 { name="ncf"; version="1.2-9"; sha256="0wxn004jn4wba2zqnfrd513pw4mjxkmk4n1xj829nxadn1zbkcax"; depends=[]; }; - ncg = derive2 { name="ncg"; version="0.1.1"; sha256="1jzkzp61cc5jxmdnl867lcrjjm7y2iw9imzprbd098p1j3w8fvj7"; depends=[]; }; + ncf = derive2 { name="ncf"; version="1.3-2"; sha256="1lqswih19g76aswnf6xygficzf7ri3yayqicifj8cqx8iwvrk91y"; depends=[]; }; ncmeta = derive2 { name="ncmeta"; version="0.3.0"; sha256="0rip0lb1sccwy94jcr84pimnz5a55gnqf0xwvxyyibmzlwkzsd2b"; depends=[dplyr rlang RNetCDF tibble tidyr]; }; ncodeR = derive2 { name="ncodeR"; version="0.2.0.1"; sha256="1pxiqxhq2rxs8rxxhw1hbds7z2qkf7ws26a8wsbw815yn6jm10n8"; depends=[cli R6 rhoR]; }; ncpen = derive2 { name="ncpen"; version="1.0.0"; sha256="0vl4cbrsifr5s1691gacmp0lk3aqyq0yfafafzv6g3zygi4igrsa"; depends=[Rcpp RcppArmadillo]; }; @@ -13226,7 +12929,7 @@ in with self; { neariso = derive2 { name="neariso"; version="1.0.1"; sha256="1b2gnws75kkqsi8mg9n0zzdaawx57a6zz47cswabj5m6nb09ikh8"; depends=[]; }; neat = derive2 { name="neat"; version="1.2.3"; sha256="0mdv47l50wzxnjfk1sway7gzpkyf57svqip16fqn0hrc1fsrifbn"; depends=[igraph]; }; neatRanges = derive2 { name="neatRanges"; version="0.1.3"; sha256="1zfp6f1q7m0bks0shvzr120nd5jxba28xhi7vrd55qfy7g72167g"; depends=[data_table Rcpp]; }; - neatStats = derive2 { name="neatStats"; version="1.10.1"; sha256="0miamjzk5sa0f76pgni2fx3sczd065axxc92dzphx66xczql98fw"; depends=[BayesFactor bayestestR car data_table Exact ez fBasics ggplot2 ggpubr logspline MBESS pROC viridis]; }; + neatStats = derive2 { name="neatStats"; version="1.11.0"; sha256="1vrpnd7xgp96rikjx50rh1mc3n2j6k86g0ax322s5ljlymwdh6sp"; depends=[BayesFactor bayestestR car data_table Exact ez fBasics ggplot2 ggpubr logspline MBESS pROC viridis]; }; neatmaps = derive2 { name="neatmaps"; version="2.1.0"; sha256="1kz1na3fzpd8vkxmpp5rz8ksyf8q2wk456csiii82winv9a2zxc9"; depends=[ConsensusClusterPlus dplyr ggplot2 heatmaply igraph]; }; nebula = derive2 { name="nebula"; version="1.2.0"; sha256="1a4jsqxprp4pn7f5nxgha3jvjkcp7rdjlpcjwfc3f89530jhmnyv"; depends=[MASS Matrix nloptr Rcpp RcppEigen Rfast trust]; }; needmining = derive2 { name="needmining"; version="0.1.1"; sha256="0qsj0ihjchrnl4s44rpsizbcz033z00dmzvic2y1msv0bnfawl6p"; depends=[randomForest rtweet SnowballC SparseM stringr tau tm]; }; @@ -13236,16 +12939,16 @@ in with self; { negligible = derive2 { name="negligible"; version="0.1.0"; sha256="183rcrv7b33qglhqm2bl2whzwiwh6rikw9vsj03lgqjvjaa22s5h"; depends=[DescTools dplyr ggplot2 lavaan nptest WRS2]; }; neighbr = derive2 { name="neighbr"; version="1.0.3"; sha256="1rmglfjmx6bfd4w1cpx4rvp7hy2vqvcamy854h5dq0l3kwk4pjcm"; depends=[]; }; neldermead = derive2 { name="neldermead"; version="1.0-12"; sha256="0ws2knrq3b3icv6fzimypzwvzvqf0sayi2ndhacn6lk4snms5pm3"; depends=[optimbase optimsimplex]; }; - neo2R = derive2 { name="neo2R"; version="2.1.0"; sha256="1fhi74d4730pxrmv1p2gz8ylvnilxn4l837nha6ndyhy00xfgkk6"; depends=[base64enc jsonlite RCurl]; }; - neo4jshell = derive2 { name="neo4jshell"; version="0.1.1"; sha256="03qnv5xf7dvlzq259brfwk7vfr05q7labakv9mj27x70yhxq1z7m"; depends=[fs magrittr R_utils ssh sys]; }; + neo2R = derive2 { name="neo2R"; version="2.1.1"; sha256="1i6g4xbbg2fsy584mqsrfnjbgls87b09f4yxdq8ff8r1a5wsq388"; depends=[base64enc jsonlite RCurl]; }; + neo4jshell = derive2 { name="neo4jshell"; version="0.1.2"; sha256="0dkdg8ljyv7pi6zkpsq5akkl35vrhkr78xvc2ky99gwjsr0z77hf"; depends=[fs magrittr R_utils ssh sys]; }; neo4r = derive2 { name="neo4r"; version="0.1.1"; sha256="0s4rjhn2mc8ca4p8p474a83dc277vrf7l968xwxkiac0d4fgbra7"; depends=[attempt data_table glue httr igraph jsonlite magrittr purrr R6 rlang rstudioapi shiny tibble tidyr tidyselect]; }; - neonUtilities = derive2 { name="neonUtilities"; version="2.1.3"; sha256="06p9b360qn7xbq3b9fmsvm11jkvfpz2lml33701iav7k59dibwki"; depends=[curl data_table downloader httr jsonlite pbapply R_utils stringr tidyr]; }; + neonUtilities = derive2 { name="neonUtilities"; version="2.1.4"; sha256="1nx0d6r8ai3035rkk2s52q9kz1kg2w3cpcrqjk06f84wqd8cxyiv"; depends=[curl data_table downloader httr jsonlite pbapply R_utils stringr tidyr]; }; neonstore = derive2 { name="neonstore"; version="0.4.4"; sha256="0fhjm6513kd4y3lry8dwcwk13ns92yk5h3san7ww2ahhdhy4hx9c"; depends=[DBI duckdb httr progress R_utils thor vroom zip]; }; neotoma = derive2 { name="neotoma"; version="1.7.4"; sha256="1fknzp7qg5l5lkfvqfld0x67zj3xmi8vivsg70m47mbpcs92hmcf"; depends=[analogue dplyr httr jsonlite leaflet plyr reshape2 xml2]; }; - nephro = derive2 { name="nephro"; version="1.2"; sha256="1izmzx8lah322xzb42asfnrvr2c9yqd0zf7fmrhwd3p4rr1rqa7d"; depends=[]; }; - neptune = derive2 { name="neptune"; version="0.2.2"; sha256="01ac0ph4jh6lcv5502xbzhka537bwiszvkyb06q18ls0b5pcgrar"; depends=[ggplot2 htmlwidgets plotly reticulate rstudioapi this_path]; }; + nephro = derive2 { name="nephro"; version="1.3"; sha256="08gryzr53cd5gc8ks7v9jicgk4lxcwcr7zd8vzsqvy04sh3scw9i"; depends=[]; }; + neptune = derive2 { name="neptune"; version="0.2.3"; sha256="04d5rdcvnik9rj58npvs5z1r6ngs9hzc24wzix64czcynkkvkad0"; depends=[ggplot2 htmlwidgets plotly reticulate rstudioapi this_path]; }; nesRdata = derive2 { name="nesRdata"; version="0.3.1"; sha256="1lxvg11g8nizfn8sghirq2749fs9i4w1wiaz3v1djqbkzqcqfrcj"; depends=[dataone dplyr purrr rappdirs readr]; }; - nestfs = derive2 { name="nestfs"; version="1.0.1"; sha256="1y10plfiyv5ws4xpmwgvm77kp07525zv02rza08xm8qhyq4f64zc"; depends=[dgof pROC]; }; + nestfs = derive2 { name="nestfs"; version="1.0.2"; sha256="18w8bp02w7p1k0dm85523rhmsxww581ma4srvxbxq39kp8mfyabk"; depends=[dgof pROC]; }; nestr = derive2 { name="nestr"; version="0.1.2"; sha256="0qgd1sl6x5y70r3l4vf0qqynlrkdyq7mmpb8mwjn7f1hjnym1gaj"; depends=[magrittr rlang tidyselect vctrs]; }; net4pg = derive2 { name="net4pg"; version="0.1.0"; sha256="0aqagzrycgm6qnappbgi6pin10gnf9h3gj39wnncdsb2nf417ynr"; depends=[data_table graph magrittr Matrix]; }; netClust = derive2 { name="netClust"; version="1.0.1"; sha256="1h58ispdx8ddsnqrrmcxn2rbqb0hb89gpjg4p14mr7vhxw5c9zva"; depends=[Rcpp RcppArmadillo]; }; @@ -13254,7 +12957,6 @@ in with self; { netassoc = derive2 { name="netassoc"; version="0.6.3"; sha256="1hyshnbpq60a3y13b4sh1c2rk78x09q01b7q6xrgv10w7bn9r2sg"; depends=[corpcor huge igraph infotheo vegan]; }; netchain = derive2 { name="netchain"; version="0.2.0"; sha256="1skpf1n6a17mjkcxqpl6vrskk04yvqa0v4n2zw9x5r1h46q9m6qk"; depends=[gtools igraph Matrix Rcpp stringr]; }; netcmc = derive2 { name="netcmc"; version="1.0"; sha256="1ny12qr1vbqqqiksgna7d135036ixrrgp2dc270bkqzf6ags2is1"; depends=[coda ggplot2 MASS MCMCpack mvtnorm Rcpp RcppArmadillo RcppProgress]; }; - netcom = derive2 { name="netcom"; version="2.1.5"; sha256="1lg2b3lhnhiqqb06b31vbsbfbk9hifbl5dvp45flf83vn3g21ci0"; depends=[clue doParallel dplyr expm foreach GenSA ggfortify ggplot2 ggraph igraph magrittr Matrix optimx pdist pracma reshape2 rlang tibble vegan]; }; netcontrol = derive2 { name="netcontrol"; version="0.1"; sha256="1gskb728ycnhz9a9g9ghm0dz3ajf3dzgyv23bsk9i01wj9hrxhc0"; depends=[expm MASS Matrix pracma Rcpp RcppArmadillo Rdpack]; }; netdiffuseR = derive2 { name="netdiffuseR"; version="1.22.3"; sha256="1vb3ql37fh5104ks65i03mz7ka1xk1rb8xnm2wxd654khkwjcp0m"; depends=[boot igraph MASS MatchIt Matrix network networkDynamic Rcpp RcppArmadillo sna SparseM viridisLite]; }; netgen = derive2 { name="netgen"; version="1.3.2"; sha256="1yqi4rb6w9ipxgbl1j1s2s81cg7nzrn65irn5gs82hsq94d6vv2j"; depends=[BBmisc checkmate ggplot2 igraph lhs mvtnorm stringr]; }; @@ -13276,34 +12978,30 @@ in with self; { network = derive2 { name="network"; version="1.17.1"; sha256="19q563v5xfkbmr0ws9nhqx4wrxkf9jsck51rqc8mm2gq2h03lg7w"; depends=[magrittr statnet_common tibble]; }; networkABC = derive2 { name="networkABC"; version="0.8-0"; sha256="1vbabnkc8yvrxzrnaxj2v92620q1922hbcqbf1z3lmar5dbkql7f"; depends=[network RColorBrewer sna]; }; networkD3 = derive2 { name="networkD3"; version="0.4"; sha256="02wxki67drppgfka1is1ykg1f2rxf0x0657c0crj7ipfy62jbf1k"; depends=[htmlwidgets igraph magrittr]; }; - networkDynamic = derive2 { name="networkDynamic"; version="0.11.1"; sha256="0zvkqafv28shv8zv7vsirq2wyrlq0fz45r715358iwgd7zxc9fvv"; depends=[network statnet_common]; }; + networkDynamic = derive2 { name="networkDynamic"; version="0.11.2"; sha256="1srbq0mxl6crwsdvjnc0vg9c9kgim0a5hpxpb21m42c6xd8azvxy"; depends=[network statnet_common]; }; networkDynamicData = derive2 { name="networkDynamicData"; version="0.2.1"; sha256="176al8jp0gha6yzhyn5flmyackmmdnh1h8sasqrdcmba7ha7cya6"; depends=[network networkDynamic]; }; networkGen = derive2 { name="networkGen"; version="0.1.1"; sha256="1vnh5dajiaf47kx1sxyp744mlk3yvl4sxj380i3b3ic1wlgyd2h1"; depends=[igraph mgcv]; }; networkR = derive2 { name="networkR"; version="0.1.2"; sha256="07dq3syk0hr1kc2mqd70g0ih09hamd7rxxms60dyvnpm8978c1wz"; depends=[data_table fastmatch Matrix Rcpp RcppArmadillo]; }; - networkTomography = derive2 { name="networkTomography"; version="0.3"; sha256="1hd7av231zz0d2f9ql5p6c95k7dj62hp0shdfshmyfjh8900amw7"; depends=[coda igraph KFAS limSolve plyr Rglpk]; }; networkreporting = derive2 { name="networkreporting"; version="0.1.1"; sha256="1ssbz8lw4mlwcblwfbyffvayvb2gmihq4qlz5q9222fn4aa3raxd"; depends=[dplyr functional ggplot2 lazyeval plyr reshape2 stringr surveybootstrap]; }; networkscaleup = derive2 { name="networkscaleup"; version="0.1-1"; sha256="02ywmmj95xlgdavs81m0gbzyfwf9ac2wrbfwq2kcxgc0la4aimvc"; depends=[BH LaplacesDemon Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; - networksis = derive2 { name="networksis"; version="2.1-3"; sha256="1kvil3qs7xd94ak9jgvj1nss55gjg0y7d35zmass9h1hjkcrq7bg"; depends=[network]; }; networktools = derive2 { name="networktools"; version="1.4.0"; sha256="0lc8cfz7sydqi43qvv35vync38ml4gsc79dq5yyqzs5my3lbj5df"; depends=[cocor eigenmodel ggplot2 gridExtra igraph IsingFit NetworkComparisonTest nnet psych qgraph R_utils RColorBrewer reshape2 smacof wordcloud]; }; networktree = derive2 { name="networktree"; version="1.0.1"; sha256="0hkrqpx7b6sxalw1qyrncck70mx6p5gr57mf558l5mlqi52v7hg0"; depends=[Formula gridBase Matrix mvtnorm partykit qgraph reshape2]; }; neuRosim = derive2 { name="neuRosim"; version="0.2-12"; sha256="1hsnw9xipdr74fydq9013252ycbi9igh28s0j4dbdx52pv3iixzl"; depends=[deSolve]; }; neural = derive2 { name="neural"; version="1.4.2.2"; sha256="05hrqgppgwp38rdzw86naglxj0bz3wqv04akq7f0jxbbjc6kwy4j"; depends=[]; }; neuralnet = derive2 { name="neuralnet"; version="1.44.2"; sha256="09l808vgjh059a3f94vgsprfyp5c1hrbjn6i1cn34cxnbljwsrjz"; depends=[Deriv MASS]; }; - neurobase = derive2 { name="neurobase"; version="1.32.1"; sha256="0lsgqbdpi2nrgrfnw1hzgkjks625cz0s71b7810sh3f7w78mk43k"; depends=[abind matrixStats oro_nifti R_utils RNifti]; }; neuroblastoma = derive2 { name="neuroblastoma"; version="1.0"; sha256="0hs87fvwaq53xxbh2dw3hjsmf1zkyqli9qyacxf72fnkyhhl8b45"; depends=[]; }; neurocInstall = derive2 { name="neurocInstall"; version="0.12.0"; sha256="1fkb6ji9gigqdjl50hbgdgfidqpjgqlh1aidf6vn4qnfr92bsvqf"; depends=[devtools]; }; neurohcp = derive2 { name="neurohcp"; version="0.9.0"; sha256="02z0lhmw2mr2fk8d8wp7nfcrfl8izds68zskm5j0xfabfb4dwkbx"; depends=[aws_s3 base64enc digest httr xml2]; }; neuroim = derive2 { name="neuroim"; version="0.0.6"; sha256="00cjr6pkip6zi2d0q3qbn3lb3k0z82v6c19qslvgpa9n0g63dr5p"; depends=[abind assertthat hash iterators Matrix Rcpp readr rgl stringr yaImpute]; }; neuromplex = derive2 { name="neuromplex"; version="1.0-1"; sha256="1zj7x528qv4bp24fx546jj9kf0q0n26jyi65v6h2bl3c61rrb6bz"; depends=[BayesLogit dplyr ggplot2 gridExtra magrittr tidyr]; }; - neuronorm = derive2 { name="neuronorm"; version="1.0.1"; sha256="09sd73a5xr1id37b3rkmv8v4f67wjwac9k3j1q5ssgkpq92kg50k"; depends=[fslr knitr neurobase oro_nifti]; }; neutralitytestr = derive2 { name="neutralitytestr"; version="0.0.3"; sha256="1660v7nng6dj9gwn04ynirms0g10wpsz33i26va229zdviqm5cyy"; depends=[cowplot dplyr ggplot2 ggpmisc pracma scales]; }; nevada = derive2 { name="nevada"; version="0.1.0"; sha256="0z1wi3769204cgi6hk13nnm6z6nx3dlx334mbs13r7p5rhmf794g"; depends=[cli dplyr flipr forcats ggplot2 igraph magrittr purrr Rcpp RcppArmadillo rlang tibble tidyr withr]; }; neverhpfilter = derive2 { name="neverhpfilter"; version="0.4-0"; sha256="097nfz30pf4bd95l943ccsvndni0n8c6gpcdk5dv02802mcg0h81"; depends=[xts zoo]; }; newFocus = derive2 { name="newFocus"; version="1.1"; sha256="0j7wl4yf4dnz4vbbnhsk39w9zqbnad2lhxwqbns1plhdd02hzsfr"; depends=[ctgt]; }; newTestSurvRec = derive2 { name="newTestSurvRec"; version="1.0.2"; sha256="06p782md33wqh5wa1735yg5i01d42p74kl7h5qhqs9cd732ls6pz"; depends=[]; }; newsanchor = derive2 { name="newsanchor"; version="0.1.1"; sha256="1s8qhq9jk5gnsimnvy7kdayya0ks0ly309l7zxm5rafj5x7k5vwn"; depends=[askpass devtools httr jsonlite lubridate tidyr xml2]; }; - newscatcheR = derive2 { name="newscatcheR"; version="0.1.0"; sha256="0rm91dfzfjhi51gk65gvq2z7aywg6y8ay3hrjnp6frlmyvh661sp"; depends=[tidyRSS]; }; - newsmap = derive2 { name="newsmap"; version="0.7.4"; sha256="1k7jbfz3hrpy8z3zfn0gcm9fzmfiaf3qkx1m89c5q072zpdpiajn"; depends=[Matrix quanteda quanteda_textstats stringi]; }; + newscatcheR = derive2 { name="newscatcheR"; version="0.1.1"; sha256="026ggv81a7g426ir4p4yzzwlp8d5szhw0xsdbnmiqzyfvs2js0d0"; depends=[tidyRSS]; }; + newsmap = derive2 { name="newsmap"; version="0.8.1"; sha256="0r7ldw78wi66li6xgski5g0fa0sfwya6jw79ag06i9zgnzmswd85"; depends=[Matrix quanteda quanteda_textstats stringi]; }; newsmd = derive2 { name="newsmd"; version="0.4.0"; sha256="1pzsblkvs374nc6795llm9lbqj5z410g1mgr3q4fgpm0398zmsrv"; depends=[R6]; }; nfer = derive2 { name="nfer"; version="1.1.0"; sha256="0kl7yks8m7ylm3vlmffjy1fgjchf4pym49jgpnq9jbkysvvbxpb0"; depends=[]; }; nfl4th = derive2 { name="nfl4th"; version="1.0.1"; sha256="11hk9446ckhg46dzkbvd12n6k02m6qx265spwqdm23xpncamjlkk"; depends=[dplyr glue httr janitor jsonlite magrittr mgcv nflfastR nflreadr purrr stringr tibble tidyr tidyselect xgboost]; }; @@ -13313,14 +13011,14 @@ in with self; { nflseedR = derive2 { name="nflseedR"; version="1.0.2"; sha256="061jd3mr06mxs5riwlph3a1hsk5jypws71jy9jzhhqnijdy96bki"; depends=[cli crayon curl dplyr furrr future glue gsubfn magrittr progressr purrr readr rlang tibble tidyr]; }; nflverse = derive2 { name="nflverse"; version="1.0.1"; sha256="1miacjvfl3968m54d6b5qgs7y3w6qw49nw96qxdwb2175gwhbl51"; depends=[cli crayon magrittr nfl4th nflfastR nflplotR nflreadr nflseedR rlang rstudioapi]; }; nftbart = derive2 { name="nftbart"; version="1.3"; sha256="0mg1ysl1mpb3l6j5sbvy3ln2abjrsqig5bqb716sham6p12szlip"; depends=[nnet Rcpp survival]; }; - ngboostForecast = derive2 { name="ngboostForecast"; version="0.0.2"; sha256="1jh3acr2asc8ih7kv05z4n7ialvvbkg61w01n9avvvgjw9ifsf4x"; depends=[dplyr forecast magrittr R6 reticulate]; }; + ngboostForecast = derive2 { name="ngboostForecast"; version="0.1.0"; sha256="0j8cczr7x3rdzm7gwsi73b7dhz38pdby42s20d1y9a01chgr69lg"; depends=[dplyr forecast magrittr R6 reticulate]; }; ngram = derive2 { name="ngram"; version="3.2.1"; sha256="1zjp5gn82b733a0glqrpvm1rqmqk0apni9fbm0jszbnc3y9h478z"; depends=[]; }; ngramr = derive2 { name="ngramr"; version="1.7.5"; sha256="1zs6ninvhz6lavxnp59105wy0n0j839ps6yaaz21s42xk11lfp1k"; depends=[cli dplyr ggplot2 httr lifecycle RCurl rjson rlang scales stringr textutils tibble tidyr xml2]; }; ngramrr = derive2 { name="ngramrr"; version="0.2.0"; sha256="1p8s4p3h27g647rxx9qjfad5dzbngjbmvhw4gz0jbsmfqrsf72by"; depends=[tau tm]; }; ngspatial = derive2 { name="ngspatial"; version="1.2-2"; sha256="09hdvmbna4m62zv18k5kj9718wzw7p43wnal2j6aa0m5sd2rx9rz"; depends=[batchmeans Rcpp RcppArmadillo]; }; - nhanesA = derive2 { name="nhanesA"; version="0.6.5.3"; sha256="00sfbzh7r2lvc19prjm3zfgs62j6frh5rw6jvb25z8wzrhw52z3f"; depends=[Hmisc magrittr plyr rvest stringr xml2]; }; + nhanesA = derive2 { name="nhanesA"; version="0.6.7"; sha256="1vybiqwn0nzm0b2ld6gd2sqm264krwig48qridh513di5jg2j2d3"; depends=[foreign magrittr plyr rvest stringr xml2]; }; nhdR = derive2 { name="nhdR"; version="0.5.7"; sha256="1nvnfkp60y317cgqpyxz6hbkqhm3xaicdicjljmb9hhqm04hbjp5"; depends=[curl dplyr foreign ggplot2 httr maps memoise purrr rappdirs rgdal rlang rvest sf stringr units xml2]; }; - nhdplusTools = derive2 { name="nhdplusTools"; version="0.5.1"; sha256="0f0vph1931cdkh9kx4d4nm7nmj9rav99wlcd1l8684mb8l9p9z7c"; depends=[dataRetrieval dplyr fst httr jsonlite magrittr pbapply prettymapr R_utils RANN rosm sf tidyr units xml2 zip]; }; + nhdplusTools = derive2 { name="nhdplusTools"; version="0.5.2"; sha256="0x1asjrpyxxdz9v2nj7b2g9nqkd22jg52j901jh19l5y5fd1b14a"; depends=[dataRetrieval dplyr fst httr jsonlite magrittr pbapply prettymapr R_utils RANN rosm sf tidyr units xml2 zip]; }; nhlapi = derive2 { name="nhlapi"; version="0.1.4"; sha256="1c5s7fd9agzk20xi8v38dk8ih6lmn8c90mxncyr996bhipgr7vl3"; depends=[jsonlite]; }; nhlscrape = derive2 { name="nhlscrape"; version="0.1.3"; sha256="0x6y747j6lha3jw4v2wavgd12xw5nx4m8biv9rmq9z0qy53vncjc"; depends=[DBI httr jsonlite RSQLite rvest xml2]; }; nhm = derive2 { name="nhm"; version="0.1.0"; sha256="1yf9hnbmfb7xj8mbhnq40wvd0pd88x9qspy1jr3x0n8nb75i3jlp"; depends=[deSolve maxLik mvtnorm]; }; @@ -13338,52 +13036,50 @@ in with self; { nima = derive2 { name="nima"; version="0.6.2"; sha256="0n8r8h1m0v0ssbpv6p32jby49f45qbicwr0awm7x054p48qk49cy"; depends=[assertthat dplyr ggplot2 ggthemes gridExtra gtools scales]; }; nimble = derive2 { name="nimble"; version="0.12.2"; sha256="06qs22q0l1iv82q5q48f5hpn0jxy8pds378k9cxhnzws2nms7xra"; depends=[coda igraph R6]; }; nimbleAPT = derive2 { name="nimbleAPT"; version="1.0.4"; sha256="0615fm6sa6nf607ay98r81m0pp8yvydpwzn3972imf87irps2k3l"; depends=[nimble]; }; - nimbleCarbon = derive2 { name="nimbleCarbon"; version="0.1.2"; sha256="1cj1yik4knxniag12qr8hqxkqhcm5lhq8xw7g8iibv3rxq0jvkki"; depends=[coda doSNOW foreach nimble rcarbon snow]; }; + nimbleCarbon = derive2 { name="nimbleCarbon"; version="0.2.1"; sha256="1dzkc0ay617a1l6m919sqxfcnx0z9kwfykn11f9hz6ddf4wgkysm"; depends=[coda doSNOW foreach nimble rcarbon snow]; }; nimbleEcology = derive2 { name="nimbleEcology"; version="0.4.1"; sha256="1z4byxsana1fa2y7qhmiqbb8ana6zbas0cmbgcc703mqh1642jb2"; depends=[nimble]; }; nimbleSCR = derive2 { name="nimbleSCR"; version="0.1.3"; sha256="1859qai1cyh82cxa8kccrn36flw045j4dggzixi2m3k029gvjh15"; depends=[nimble]; }; nimbleSMC = derive2 { name="nimbleSMC"; version="0.10.1"; sha256="1bxm729v40zd9gflllp8plj7gk325mc4gdlmsvkrgp31rslkxx76"; depends=[nimble]; }; nipals = derive2 { name="nipals"; version="0.8"; sha256="0nv7h68hysxnpiinmgw6v3bz4ya53c0p96k9bfvcmalfb7hs8j5z"; depends=[]; }; nipnTK = derive2 { name="nipnTK"; version="0.1.0"; sha256="0imy2x1h9d842ssw7hmmh21c4mj7s6y05mmjin1270skbnrk2zmr"; depends=[bbw withr]; }; - nitrcbot = derive2 { name="nitrcbot"; version="1.2"; sha256="0lainbw9j5aj9s824afpxdjl3q2f728jfpdfji7kpi9hdg8jixhx"; depends=[dplyr httr jsonlite RCurl]; }; nivm = derive2 { name="nivm"; version="0.3"; sha256="111jkgirgsl1j36xgwi81wzwxial3vdw8mqzi1faldxxd9a2cixm"; depends=[bpcp ssanv]; }; nixmass = derive2 { name="nixmass"; version="1.0.2"; sha256="0g8hm0mnbwahbnk44rfciiggxn5bscfni5gqc6y3za496cf9wlk1"; depends=[lubridate zoo]; }; njgeo = derive2 { name="njgeo"; version="0.1.0"; sha256="1cc6gm0l5z31hqif2d8wd503pb48xsmyr28pbildkxgy9z022af5"; depends=[curl dplyr httr jsonlite sf]; }; - njtr1 = derive2 { name="njtr1"; version="0.3.1"; sha256="125c5qp2d4q2h4darhx2acqk898kh5775rxjyfjidl0nxhvcvn4q"; depends=[curl dplyr httr lubridate readr stringr tidyselect]; }; + njtr1 = derive2 { name="njtr1"; version="0.3.2"; sha256="1fyp9myzlx670xjpzxq4ivbl1qs7f3rz6n424ydp1ml994mz709a"; depends=[curl dplyr httr lubridate readr stringi stringr tidyselect]; }; nlMS = derive2 { name="nlMS"; version="1.1"; sha256="01ijg1bp3r0dg8ph7qpsx3hqzrrvfhbykml20hqchxk7c5n2w9wz"; depends=[nlme]; }; nlWaldTest = derive2 { name="nlWaldTest"; version="1.1.3"; sha256="1cppdz8qvigjdz4sgr1gm2j09zi407xxmryc28zc7ps7rvgy344h"; depends=[]; }; nlaR = derive2 { name="nlaR"; version="0.4.0"; sha256="05ipw2j4w5r3bpmhqh742yqz5qihx36jnsq08bli8jwsqha9vm8h"; depends=[rappdirs]; }; nlcv = derive2 { name="nlcv"; version="0.3.5"; sha256="1ywnm8a13ifqa1bxnf659h1j6mg9iy02vaszyh9p966ps9c1pjab"; depends=[a4Core Biobase e1071 ipred kernlab limma MASS MLInterfaces multtest pamr randomForest RColorBrewer ROCR xtable]; }; nleqslv = derive2 { name="nleqslv"; version="3.3.2"; sha256="1v9znvncyigw9r25wx2ma0b7ib179b488dl0qsrhp5zrcz7mcjgm"; depends=[]; }; - nlirms = derive2 { name="nlirms"; version="3.4.4"; sha256="1njyfip377a0f6hf9y32s077b4jv4h8ydbjgnl68yfypxbfn2xyx"; depends=[gridExtra gtable]; }; nlist = derive2 { name="nlist"; version="0.3.3"; sha256="1wq7bp834c7cl37wbrgd9ars3mm0s5c3l3fxlrry728a27c27f9h"; depends=[abind chk coda extras generics lifecycle purrr term tibble universals]; }; nlme = derive2 { name="nlme"; version="3.1-157"; sha256="0v6rw6d7mk1szi5bgs5m91k76hgwcb7r704xaypvlv6bkmra5wnx"; depends=[lattice]; }; - nlmeODE = derive2 { name="nlmeODE"; version="1.1"; sha256="1zp1p98mzbfxidl87yrj2i9m21zlfp622dfnmyg8f2pyijhhn0y2"; depends=[deSolve lattice nlme]; }; - nlmeU = derive2 { name="nlmeU"; version="0.70-3"; sha256="05kxymgybziiijpb17bhcd9aq4awmp5km67l2py9ypakivi0hc6l"; depends=[nlme]; }; + nlmeU = derive2 { name="nlmeU"; version="0.70-9"; sha256="10vk098mv8h9hv6cn8sih2fmg9cjsqmvndqzqm8bbaahla1v6n7q"; depends=[nlme]; }; nlmeVPC = derive2 { name="nlmeVPC"; version="2.2"; sha256="0dkj0l0rkml6nydg3k04dzcp17sn59p3hnaqmnqa0arbzv0rsq8i"; depends=[dplyr ggplot2 Hmisc magrittr optimx plyr quantreg Rcpp RcppArmadillo tidyr timeDate]; }; nlmixr = derive2 { name="nlmixr"; version="2.0.7"; sha256="1fqshr8y9rrkbnvcrpk0m12gimd1m0lrc2cl8x1x78hnhfs4dvlb"; depends=[backports BH brew dparser fastGHQuad ggplot2 lbfgsb3c magrittr Matrix minqa n1qn1 nlme Rcpp RcppArmadillo RcppEigen rex RxODE StanHeaders symengine]; }; + nlmixr2data = derive2 { name="nlmixr2data"; version="2.0.7"; sha256="06wchhd5rg76vws8lvh5yf8cia7d09ds61h9zizqk7j9azkx004j"; depends=[]; }; + nlmixr2est = derive2 { name="nlmixr2est"; version="2.0.6"; sha256="0pfvc5imx6mlm1d8zc32c43sn5zq5kn9pnasiykj2xlpfbywmad4"; depends=[backports BH dparser lbfgsb3c magrittr Matrix minqa n1qn1 nlme nlmixr2data Rcpp RcppArmadillo RcppEigen rex rxode2 StanHeaders symengine]; }; nlmm = derive2 { name="nlmm"; version="1.0.1"; sha256="0q5vz4xqdb510i26zbcq4djcribn7h477akh8f56nzjgq231vhcq"; depends=[BH HI lqmm MASS Matrix mvtnorm nlme numDeriv Qtools Rcpp RcppArmadillo statmod]; }; nlmrt = derive2 { name="nlmrt"; version="2016.3.2"; sha256="1g0qq0a933ay65gkp04qgn2wqk6vw79pj2a228c2ski4rcmkjxyn"; depends=[]; }; nlnet = derive2 { name="nlnet"; version="1.4"; sha256="13lv4b6chsjrhimny3wc1y9ljgbxmm1byj4j04n4vj8icn87gyfd"; depends=[coin e1071 earth fdrtool igraph randomForest ROCR TSP]; }; - nloptr = derive2 { name="nloptr"; version="2.0.0"; sha256="16k124ll14p3ygny6i1zd7yza83bv2sk87x922n1bfn9rx4k3jk5"; depends=[testthat]; }; + nloptr = derive2 { name="nloptr"; version="2.0.1"; sha256="069ac41z7pq8pi4nhn95i30gfajdaz90jja0b2zazrbxyxsz111r"; depends=[testthat]; }; nlpred = derive2 { name="nlpred"; version="1.0.1"; sha256="05jna8hzd5v36a0dwag6zr8ms1pkryas3qarwb946bkxlslffp27"; depends=[assertthat bde cvAUC data_table np Rdpack ROCR SuperLearner]; }; nlraa = derive2 { name="nlraa"; version="1.2"; sha256="1h4hhjxys3sgk3cvhjcmfpxaqmkcmvsr5an6rgqqbg0zwgqizl1s"; depends=[boot knitr MASS Matrix mgcv nlme]; }; nlreg = derive2 { name="nlreg"; version="1.2-2.2"; sha256="0gkcxg5m287axhvkl00xy26vidawhhb1ii1s13rh49v0yccwvvqh"; depends=[statmod survival]; }; nlrr = derive2 { name="nlrr"; version="0.1"; sha256="09wm8s5sadkhkq9pb3fjk66cb2xn8py46w1d7yp7fjhczh31bjsq"; depends=[Hmisc rms]; }; nlrx = derive2 { name="nlrx"; version="0.4.3"; sha256="1w788fs9zkcbg99csiynd6cw9p8na2g5sg85065d17l6wxmxk7va"; depends=[crayon dplyr EasyABC furrr genalg GenSA igraph lhs magrittr progressr purrr raster readr rstudioapi sensitivity sf stringr tibble tidyr XML]; }; nls_multstart = derive2 { name="nls.multstart"; version="1.2.0"; sha256="1aichzwg54jhw1y3csv2bx40cszbgzfa60hr17jb5133nxb99gwh"; depends=[dplyr minpack_lm purrr tibble tidyr]; }; - nls2 = derive2 { name="nls2"; version="0.2"; sha256="0k46i865p6jk0jchy03jiq131pc20h9crn3hygzy305rdnqvaccq"; depends=[proto]; }; + nls2 = derive2 { name="nls2"; version="0.3-3"; sha256="05miqxfpg29jpf1p3bi347w5565bd3cih8dpvnc3p0i0hcbzmlkl"; depends=[proto]; }; nlsMicrobio = derive2 { name="nlsMicrobio"; version="0.0-3"; sha256="0vn0yv1h8idv91g7qhx8qfyvsvw4rbx7i8r8kfv13d40j1w4cfab"; depends=[nlstools]; }; nlsem = derive2 { name="nlsem"; version="0.8"; sha256="0q3wk7x67mh2447ah807djyklia2x2d45krsskffynazm83msnj9"; depends=[gaussquad lavaan mvtnorm nlme orthopolynom]; }; nlshelper = derive2 { name="nlshelper"; version="0.2"; sha256="02xnx0j8p1im1hdwnia3n51dicscjf8s33y475i3dczvhmivvbmf"; depends=[broom dplyr magicaxis mgcv nlme]; }; nlshrink = derive2 { name="nlshrink"; version="1.0.1"; sha256="0adnr7g3n3brwlvyix8wa7h59gj036l5anv8abqy80ysmfcmsp0y"; depends=[MASS nloptr]; }; - nlsic = derive2 { name="nlsic"; version="1.0.1"; sha256="1gy9z6zmf3c39s7wbdd5a1hrlnq0njj96wc2pxmnp5ihjawinq78"; depends=[nnls]; }; + nlsic = derive2 { name="nlsic"; version="1.0.2"; sha256="1dsnc5348l9vcxh9byglayadvpsmmzlpsgllny830s9fq1c1wzh3"; depends=[nnls]; }; nlsmsn = derive2 { name="nlsmsn"; version="0.0-6"; sha256="1wrqfmsb3l4bsdncyjl7hh3vwj9s6l43p7klww6f4k21asvh4p5s"; depends=[]; }; nlsr = derive2 { name="nlsr"; version="2021.8.19"; sha256="021brwb73gg2c3ingrdk81dm4mx0g2s2k8nk2qcz3zqmd0gzadn6"; depends=[digest]; }; - nlsrk = derive2 { name="nlsrk"; version="1.1"; sha256="0yqcsz5pdhqsrd86g0yx8bdac13fbmvg89phj3v4qvla2jfznjba"; depends=[]; }; nlstac = derive2 { name="nlstac"; version="0.1.0"; sha256="0ag9zzzcadgwa43j16ff30r7g8jfihkwi76shv43igp52a11jr72"; depends=[Deriv doParallel foreach stringr]; }; nlstools = derive2 { name="nlstools"; version="2.0-0"; sha256="07givljg4ynp56613bnyh5a6cf41h6ihsrwp073zwnxr0l9c5gqf"; depends=[]; }; nlt = derive2 { name="nlt"; version="2.2-1"; sha256="10wf00qzf28dxjfvv12wsqxlfn6xz15wk8njrzgsgm9px1g6s21f"; depends=[adlift EbayesThresh]; }; - nltm = derive2 { name="nltm"; version="1.4.3"; sha256="0k4bydc9d5k9dd1yzrk9glj54drlqqd8p2ggx75jhyw5shyl6471"; depends=[survival]; }; + nltm = derive2 { name="nltm"; version="1.4.4"; sha256="0ps6rl0yafg8ajwfk3iqbgjngq354bfbys619p5c94i498bigwcf"; depends=[survival]; }; nlts = derive2 { name="nlts"; version="1.0-2"; sha256="0s49qjwavl9ns2746nn4zy4h4dh0njfcvznm3qd61qhs7np9w1db"; depends=[acepack locfit]; }; nmaINLA = derive2 { name="nmaINLA"; version="1.1.0"; sha256="1qjb5n1qr89rv2a5ay2p74cs3i6swkn8wllklgn57fnahb9pcrgi"; depends=[]; }; nmadb = derive2 { name="nmadb"; version="1.2.0"; sha256="17r5vc57ilhy6cfcqpfyp9nzzjaa5gc8qkgfn3y8sppqh1g1mi40"; depends=[devtools jsonlite RCurl readxl]; }; @@ -13395,10 +13091,9 @@ in with self; { nmslibR = derive2 { name="nmslibR"; version="1.0.6"; sha256="1biaaifcnzjpj6prq04avgfz29n1v65kgpir8jrg4ndb6krjwh94"; depends=[KernelKnn Matrix R6 Rcpp RcppArmadillo reticulate]; }; nmw = derive2 { name="nmw"; version="0.1.4"; sha256="1vj7b2p40x0h3xp45qzar86i9439mj8y3r5hnlbwa025jqdf2g0q"; depends=[numDeriv]; }; nnGarrote = derive2 { name="nnGarrote"; version="1.0.4"; sha256="0km7vx9qkfijj2af5ma4q88mhgkrw361hpv3n8dyzpr8654hrw4v"; depends=[glmnet]; }; - nnTensor = derive2 { name="nnTensor"; version="1.1.5"; sha256="0sxmx34xb0fk5fcynry1vrfk7jr2w6kyjyghlqg8j94rn4hamjsb"; depends=[fields ggplot2 plot3D rTensor tagcloud]; }; + nnTensor = derive2 { name="nnTensor"; version="1.1.6"; sha256="1gc014472krvaklpz9kbf9gllhjkzif9k4wg7shznlmbm470mnb3"; depends=[fields ggplot2 plot3D rTensor tagcloud]; }; nna = derive2 { name="nna"; version="0.0.2.1"; sha256="17cz1jf7iv61wspqldfdwbdjhlr0wq09idkzlivfb8aik5w9f0z5"; depends=[]; }; nnet = derive2 { name="nnet"; version="7.3-17"; sha256="0rws3rkd7dz1maz2mkld29jfrixjgacay8rqz7nmi82a2sw0nxgf"; depends=[]; }; - nnetpredint = derive2 { name="nnetpredint"; version="1.2"; sha256="1c6s9wm6vhylwv4xhp2hkllw18zj8hdr17ls9vlxm9qs3wx1v48w"; depends=[RSNNS]; }; nnfor = derive2 { name="nnfor"; version="0.9.6"; sha256="0bciy6k79g7abvj3pmmdc4wzg5mp11zgmdbx17x4by993p2clhw9"; depends=[forecast glmnet MASS neuralnet plotrix tsutils uroot]; }; nngeo = derive2 { name="nngeo"; version="0.4.5"; sha256="1davvn7ggbs41d172hq9mq0scndcp16ygan6g8qm15ywp4rs8c17"; depends=[data_table lwgeom nabor s2 sf units]; }; nnlasso = derive2 { name="nnlasso"; version="0.3"; sha256="1n7karlmgq61z9ywfx9xb5wvmxx40ydpnzzazj1xr70qlv5m0qk4"; depends=[]; }; @@ -13411,7 +13106,7 @@ in with self; { noaastormevents = derive2 { name="noaastormevents"; version="0.2.0"; sha256="1d93h8av0bbv7a56g6m000qpsnzqpfdla0fmcj5y8fbbqkipxnfr"; depends=[choroplethr choroplethrMaps data_table dplyr forcats ggplot2 hurricaneexposure lubridate magrittr maps plyr RColorBrewer RCurl rlang stringr tibble tidyr viridis XML]; }; noah = derive2 { name="noah"; version="0.1.0"; sha256="1ln23lp4c70fin9sjjhm4ngy47f8sk2mcljp5q449b7hq8gqi12c"; depends=[assertthat crayon digest dplyr hash magrittr purrr R6 rlang stringr]; }; noctua = derive2 { name="noctua"; version="2.5.1"; sha256="1bl80z2pffzf8dsy2xwjhyb9nb5v1zglcvap2xm6amnm2i0c3cdj"; depends=[data_table DBI paws uuid]; }; - nodbi = derive2 { name="nodbi"; version="0.7.0"; sha256="0g5b3cbdf15f76dql2p7mh00xs3nrnfq5hg3pyk071fa55wf2532"; depends=[DBI elastic jqr jsonify jsonlite mongolite RPostgres RSQLite sofa stringi uuid]; }; + nodbi = derive2 { name="nodbi"; version="0.7.1"; sha256="17axlfy39rkk93ajgpv73kywcfkcp1n9pbbr9bsgkwz95rhshjq0"; depends=[DBI elastic jqr jsonify jsonlite mongolite RPostgres RSQLite sofa stringi uuid]; }; node2vec = derive2 { name="node2vec"; version="0.1.0"; sha256="03gfpn4xgmdwlrpwi9pdpnh6k75mwp85j6vywkj0jsxhz3rbg95g"; depends=[data_table dplyr igraph rlist vctrs vegan word2vec]; }; nodeHarvest = derive2 { name="nodeHarvest"; version="0.7-3"; sha256="0nh3g50rk9qzrarpf29kijwkz9v60682i0ag77j2ipyvhhbpwpkc"; depends=[quadprog randomForest]; }; nodeSub = derive2 { name="nodeSub"; version="1.2.3"; sha256="0whg8yz3padlfygwwb3cs57p33vkxa0py4lbnj23iqypni7lna75"; depends=[ape apTreeshape assertthat babette beastier beautier DDD geiger mauricer nLTT pbapply phangorn phylobase rappdirs Rcpp Rmpfr RPANDA stringr testit tibble tracerer]; }; @@ -13435,7 +13130,7 @@ in with self; { nonet = derive2 { name="nonet"; version="0.4.0"; sha256="1043vplj8libbzll172h82dfwnz2lsdba5na2g9liryg8p08h4v8"; depends=[caret dplyr e1071 ggplot2 glmnet pROC purrr randomForest rlang rlist tidyverse]; }; nonlinearICP = derive2 { name="nonlinearICP"; version="0.1.2.1"; sha256="1m9a1f0yrbjl0nx2l7r76pyi78b2bxj8v4jx92yga91f975mw6np"; depends=[caTools CondIndTests data_tree randomForest]; }; nonlinearTseries = derive2 { name="nonlinearTseries"; version="0.2.12"; sha256="0fdyr7a5pac40wrrn6frj0q8pn03dic5a2rls3zr85yj48mimyfs"; depends=[lifecycle Matrix Rcpp RcppArmadillo tseries zoo]; }; - nonmem2R = derive2 { name="nonmem2R"; version="0.2.3"; sha256="1x8mq0wwzn3px41pjbzwmpd8wjfq581lwq4nkiva7pf1xzjpk923"; depends=[ggplot2 gridExtra lattice latticeExtra MASS mvtnorm reshape2 splines2]; }; + nonmem2R = derive2 { name="nonmem2R"; version="0.2.4"; sha256="1lnm2mniccpsk30njmi0b18aizblg5wadm3k2kdviyxi8j2735rw"; depends=[ggplot2 gridExtra lattice latticeExtra MASS mvtnorm reshape2 splines2]; }; nonmemica = derive2 { name="nonmemica"; version="0.9.7"; sha256="12760lvbifzakzq7wjzqavqicrp2pzyq333glmafm9v73lx97pa7"; depends=[csv dplyr encode lazyeval magrittr metaplot rlang spec tidyr xml2]; }; nonneg_cg = derive2 { name="nonneg.cg"; version="0.1.6-1"; sha256="1ppwv5yad8v7qhjr4z5p5vl51ry3sxqbmg0ynkx11j67byggn6xf"; depends=[Rcpp]; }; nonnest2 = derive2 { name="nonnest2"; version="0.5-5"; sha256="1ddaqwx8i3ygwvxf11mc8xhgk4nkvnail99nr5szq8i168752zq2"; depends=[CompQuadForm lavaan mvtnorm sandwich]; }; @@ -13453,15 +13148,12 @@ in with self; { normalp = derive2 { name="normalp"; version="0.7.2"; sha256="0fqpz6v9v3xjmyh7mh2yvkjdn3v4d0nk93x7s0gj28kazl7137kz"; depends=[]; }; normalr = derive2 { name="normalr"; version="1.0.0"; sha256="1ahrg188vbhnrnwag0zi6lcb3g0y1mbz06sl3j1wyllq5l918cc7"; depends=[magrittr MASS purrr rlang shiny]; }; normtest = derive2 { name="normtest"; version="1.1"; sha256="073r2mwfs6c4vqh8921nlyygl0f20nhv997s0iwf00d3jckkc4pp"; depends=[]; }; - normwhn_test = derive2 { name="normwhn.test"; version="1.0"; sha256="1kr45bfydk40hgdg24i2f28cdaw65hg9gmsgv4lsvvr2m3r74vi6"; depends=[]; }; nortest = derive2 { name="nortest"; version="1.0-4"; sha256="17r0wpz72z9312c70nwi1i1kp1v9fm1h6jg7q5cx1mc1h420m1d3"; depends=[]; }; nortestARMA = derive2 { name="nortestARMA"; version="1.0.2"; sha256="11ala9z0snsbn1xmj9yzs4kyh9js1w19x0dnnmh5cbr9bi7aag50"; depends=[astsa]; }; nortsTest = derive2 { name="nortsTest"; version="1.0.3"; sha256="0wn4xljczy4z9j95mxisi7gyn2j262zzhp2skz4wj8c5kxj1pc6g"; depends=[forecast ggplot2 gridExtra MASS nortest tseries uroot zoo]; }; - nos = derive2 { name="nos"; version="1.1.0"; sha256="0hbncama8cx8q0rc56bil38fbj33z49v4d6zdkvxs6wgmmglnrfs"; depends=[dplyr gmp]; }; nose = derive2 { name="nose"; version="1.0"; sha256="17l78vmfqc22inq6zaqpnk2m91wp0nfjbbwfcpfqykf8lk9ipqna"; depends=[]; }; nosoi = derive2 { name="nosoi"; version="1.1.0"; sha256="1b7csrgax5ig9ibiwbhh2cl357hvdc6my4408vld498c8jjf0lyw"; depends=[data_table raster]; }; not = derive2 { name="not"; version="1.3"; sha256="0ks1xpr5r0b7v77pyr9fnk7gkznrk95fsdicww8wv4mv3jplvh1h"; depends=[]; }; - notifyR = derive2 { name="notifyR"; version="1.02"; sha256="0jx76ic5r1crcgg0n0yqnka0gwniflfxakh838a98j9wb11wi6h5"; depends=[RCurl rjson]; }; notifyme = derive2 { name="notifyme"; version="0.3.0"; sha256="0b6xrv6c4id7rs0dafg96pl4brn4yma5xh9wjz78ql44bg3w5s91"; depends=[dplyr httr magrittr]; }; novelforestSG = derive2 { name="novelforestSG"; version="1.2.1"; sha256="17gn4qc5f3n0gdmm0r1zlg6jlzd3n5d8a3fx6fynxnj8ncq604i7"; depends=[]; }; nowcastDFM = derive2 { name="nowcastDFM"; version="1.0.0"; sha256="1g2mngg4r6jl37cv9s8a2a5hlid7n4igdxp3rxk593jnqxl9a0ha"; depends=[dplyr matlab pracma signal]; }; @@ -13517,7 +13209,7 @@ in with self; { nsdr = derive2 { name="nsdr"; version="0.1.1"; sha256="1p73aj465lk52n3dikkqi54zm2f9v00ikpmry10p42qhfkgrw61l"; depends=[]; }; nse = derive2 { name="nse"; version="1.20"; sha256="037z164m78hdbwgnaa10jq50ngg3n9iigmyd1r5gz6hgvsr5sbnf"; depends=[coda mcmc mcmcse np Rcpp sandwich]; }; nse2r = derive2 { name="nse2r"; version="0.1.5"; sha256="1gwq8x3sn2f4p3yivmg2dljpdjcwsy2s6467pnwlcjdmr3sqgv2b"; depends=[httr jsonlite magrittr rvest xml2]; }; - nser = derive2 { name="nser"; version="1.4.0"; sha256="1zbnf240f1r0nxhaijvzwa9830jisp6z2cmlp80zbwxgq2yc13d6"; depends=[dplyr googleVis jsonlite lubridate magrittr purrr readr RSelenium rvest stringr tidyverse]; }; + nser = derive2 { name="nser"; version="1.4.1"; sha256="0d0wm8lvphp1azbk8iln8qjx9qaihsg5kxvlaa4s25wfjbvv831w"; depends=[curl dplyr googleVis jsonlite lubridate magrittr purrr readr RSelenium rvest stringr tidyverse]; }; nseval = derive2 { name="nseval"; version="0.4"; sha256="18avir5zllvm2sbi9616k7dlb8yxhvnbji7xshr4kcfvy1fvn2ia"; depends=[]; }; nsga2R = derive2 { name="nsga2R"; version="1.0"; sha256="04jj0a3isfc348vg46il5x9l33cr7xawz5w0mm4pwr6djhd8nfhx"; depends=[mco]; }; nsga3 = derive2 { name="nsga3"; version="0.0.3"; sha256="1jv3kw22jw24n7lnwhq3857mygr2yfv8c5xp3lbqqgz5840cdfa1"; depends=[mlr parallelMap rPref xgboost]; }; @@ -13534,17 +13226,18 @@ in with self; { numGen = derive2 { name="numGen"; version="0.1.1"; sha256="1y41wq31r8126dz1sj23smq2k6v9yqczq4ddgzqb73dsrx9dmmc0"; depends=[]; }; numKM = derive2 { name="numKM"; version="0.2.0"; sha256="0g5jw12fmfc6nl6a3ghpslkjd2d7pbihl70sks35r7dalmr6ihzk"; depends=[survival]; }; numOSL = derive2 { name="numOSL"; version="2.6"; sha256="03h1p56650x4my5vq5jlmjsz5xj0w2j75qfr08rh7nr38dwgp1k8"; depends=[]; }; + numberofalleles = derive2 { name="numberofalleles"; version="1.0.1"; sha256="0rjl21844yqp2503gy71c6vg8xywc4lcx7qr9vwvkjw5wiwxls11"; depends=[partitions pedtools Rcpp ribd]; }; numbers = derive2 { name="numbers"; version="0.8-2"; sha256="0gapcnk6zw9n77yddwsj0v6lzxm7ly2myjjj8kw5wjyng0l27b61"; depends=[]; }; numbersBR = derive2 { name="numbersBR"; version="0.0.2"; sha256="0ihxlny745gpz1ngq862rydn1zwn8zni1xw9mmgw8hkylsrnjfq8"; depends=[stringr]; }; numform = derive2 { name="numform"; version="0.7.0"; sha256="0n96jm141h4awazr8sads9d99faw8kdy3vbhmjr58d8iqf7793f8"; depends=[glue]; }; nutriNetwork = derive2 { name="nutriNetwork"; version="0.1.1"; sha256="0ya95h88jkiwc7cg7ic8bmyd7b0lgnhxrywwqvi2j6m6nbvvaxzy"; depends=[glasso huge igraph Matrix tmvtnorm]; }; nutrientr = derive2 { name="nutrientr"; version="0.1"; sha256="09623rimvy0jd6i26bm8d80jhvgwril9r2vbnlcwznmqr4fr6fhm"; depends=[dplyr ggplot2 httr jsonlite qpdf stringr testthat tibble tidyr tidyselect]; }; nvctr = derive2 { name="nvctr"; version="0.1.4"; sha256="1r7q9snr9ya1586fwbyvnk8rlb9yikl4yp3bn9kni0sw820npk1d"; depends=[magrittr pracma]; }; - nvmix = derive2 { name="nvmix"; version="0.0-8"; sha256="0vm10zjk69qmwii7qsgwwi6vp7mak2vxbm051ww6vzk0zfbhmvrf"; depends=[ADGofTest copula Matrix mnormt pcaPP pracma qrng]; }; + nvmix = derive2 { name="nvmix"; version="0.1-0"; sha256="12lhch9sib2nx8j7500dchfi27fvpabbcdkcw9qh194fx22ycknx"; depends=[ADGofTest copula Matrix mnormt pcaPP pracma qrng]; }; nycflights13 = derive2 { name="nycflights13"; version="1.0.2"; sha256="07aa76c77pm1wpzkwjmzv8n6ir5i6fxawx8wx586gwc5wajcb1qf"; depends=[tibble]; }; nzelect = derive2 { name="nzelect"; version="0.4.0"; sha256="19kcbq454yg9g76ix7v3nibgw2203d7vv6f2d6d2zkcc0h08bjm7"; depends=[]; }; nzffdr = derive2 { name="nzffdr"; version="2.0.0"; sha256="1g32bra2z6a20jjqm6d7irccmr0x36h576bws6kh5x3h25i3plfv"; depends=[curl httr stringi xml2]; }; - nzilbb_labbcat = derive2 { name="nzilbb.labbcat"; version="1.0-1"; sha256="0lypdwyvihza88jnccvh4wapfivsjy9sgxj4hvai52bkrw92578d"; depends=[httr jsonlite rstudioapi stringr]; }; + nzilbb_labbcat = derive2 { name="nzilbb.labbcat"; version="1.1-0"; sha256="0hmnnvyyrk2yxmm016337p3cwlf6szzk5sh9yzi2dzmbbyw0a16g"; depends=[httr jsonlite rstudioapi stringr]; }; nzpullover = derive2 { name="nzpullover"; version="0.3.0"; sha256="0b3mz5i58m48fa1x7gv4l3gqj0gvrar201ph2l1gkbcnfmazwjp8"; depends=[]; }; o2geosocial = derive2 { name="o2geosocial"; version="1.1.0"; sha256="158nbc45h4k677lgx9n976d9kz7hy8fb7z5s2v6pmkmh521jdn2a"; depends=[data_table geosphere ggplot2 outbreaker2 Rcpp visNetwork]; }; o2plsda = derive2 { name="o2plsda"; version="0.0.15"; sha256="0ngnj0r14w5zjiv3y4a3ijgr3jb1kvvlifnzk25m5zidz36lyjap"; depends=[dplyr ggplot2 ggrepel magrittr Rcpp RcppArmadillo]; }; @@ -13553,22 +13246,21 @@ in with self; { oaPlots = derive2 { name="oaPlots"; version="0.0.25"; sha256="0c5ig1ar02vg38pjjmp3gd53ij1j7pzajs0zrlfajz141qkv2ysr"; depends=[ggplot2 oaColors]; }; oai = derive2 { name="oai"; version="0.3.2"; sha256="1zcbcxhw692s0y6izvwazyzhgx0iwsxsbcan2nk0mb7n11p7bypb"; depends=[httr plyr stringr tibble xml2]; }; oaqc = derive2 { name="oaqc"; version="1.0"; sha256="1rc0l79xygmr2rp5sjadzigbj65a13z5xlvrxzy26cl0wsxwhmjf"; depends=[]; }; - oaxaca = derive2 { name="oaxaca"; version="0.1.4"; sha256="12w5l2a8i2964rxy9km2srlycx35y7ia8p07ra7gsxr4h8156z3c"; depends=[Formula ggplot2 reshape2]; }; + oaxaca = derive2 { name="oaxaca"; version="0.1.5"; sha256="1z3sbkgzaqq6n1bz0f17gqrbfjbm8bp20384ryx3jq2v50b6gbry"; depends=[Formula ggplot2 reshape2]; }; obAnalytics = derive2 { name="obAnalytics"; version="0.1.1"; sha256="1l4ld120qk0adycmvqrkzada10kb7z03lj2njzqagmacl1z8598f"; depends=[ggplot2 reshape2 zoo]; }; obfuscatoR = derive2 { name="obfuscatoR"; version="0.2.1"; sha256="1pnlbfsp5fjvhwn2yl495v38g1wjg5l4ry79i1a2jznq2l91hn4p"; depends=[crayon matrixStats readr Rfast stringr tibble]; }; - objectProperties = derive2 { name="objectProperties"; version="0.6.7"; sha256="1gsxbps528kmg5md9q26yfjz7p50h0k81dpfwklvsh6x0mwmranb"; depends=[objectSignals]; }; + objectProperties = derive2 { name="objectProperties"; version="0.6.8"; sha256="02rbxp2w0q6sr3zvgj99a4hi8dldn57isvimfhqjm1j8yc8p3afz"; depends=[objectSignals]; }; objectSignals = derive2 { name="objectSignals"; version="0.10.3"; sha256="087hknxhw3zqxrzdazbqw9zxi01dvrzcgm6k1i7r231vvvm6nxid"; depends=[]; }; objectremover = derive2 { name="objectremover"; version="0.8.1"; sha256="0qywigwb6r5lzvw8ylgriwignk4ayfkvfnmc6cb1yxsg0hrc4hiv"; depends=[miniUI shiny]; }; - obliqueRF = derive2 { name="obliqueRF"; version="0.3"; sha256="1bwlgv820mmpc6vg26bsdlfy2p78586i3y42hkzbw3z1fmwq3pz5"; depends=[e1071 mda pls ROCR]; }; obliqueRSF = derive2 { name="obliqueRSF"; version="0.1.1"; sha256="1picy19mrgycfxpng5qqk7q5im3m2apx8w4jxmkslpmgg1c5q2ly"; depends=[data_table dplyr ggplot2 ggthemes glmnet missForest pec prodlim purrr Rcpp RcppArmadillo rlang scales survival tidyr]; }; obs_agree = derive2 { name="obs.agree"; version="1.0"; sha256="191xshnrncjqzwd2rdq334vsx0338q3y3k1nbm04hdaysbnla9jv"; depends=[]; }; - obsSens = derive2 { name="obsSens"; version="1.3"; sha256="1vfm1mzsycwkqa39vf3fcdv1s6adps9hw1rxlvl8v9kq746hcabw"; depends=[]; }; + obsSens = derive2 { name="obsSens"; version="1.4"; sha256="07dvz3v580yliwqvfisgvzvg8ly9nw3r4y5bmwkmgphbfmh88635"; depends=[]; }; observer = derive2 { name="observer"; version="0.1.2"; sha256="1027827k57qb4xppx0xxxffd1s3n7pz754irdx3v1v3piix8xi8m"; depends=[bazar bit dplyr lazyeval magrittr tibble]; }; occ = derive2 { name="occ"; version="1.1"; sha256="1aka29qqwbd494kvi15yyyqkb9hks4ky2gcvykxhx2drm2fnsn4g"; depends=[]; }; occCite = derive2 { name="occCite"; version="0.5.4"; sha256="1widn654zjdypsr7lc1gi9p9ad16yrj32m00nqnzcrq176g4f4pa"; depends=[bib2df BIEN curl DBI dplyr ggplot2 htmltools httr leaflet lubridate RColorBrewer rgbif rlang RPostgreSQL stringr taxize tidyr viridis waffle]; }; occupancy = derive2 { name="occupancy"; version="1.2"; sha256="0j50vg1405n1hp72xqsq1hp3gdbfx5yq9w1zdv6dzjc6vjhbx00d"; depends=[matrixStats]; }; ocd = derive2 { name="ocd"; version="1.1"; sha256="06pyc352pvn85k76z9797gwk0ksbb3snvh6krysp68k3lcygq872"; depends=[]; }; - oce = derive2 { name="oce"; version="1.7-2"; sha256="0gdjq5iplccnqp90jhcn0dsji5cvxcgba7yq55x9f6pinvbcn9nv"; depends=[gsw Rcpp]; }; + oce = derive2 { name="oce"; version="1.7-3"; sha256="0mqnb1177ryjfflyhy0lqvzqqhg1xnim07wcfj4w4yy832xyhl32"; depends=[gsw Rcpp]; }; oceanic = derive2 { name="oceanic"; version="0.1.3"; sha256="1bvi7v09b62x81bphpls99s8qjczzn8xxvv3frjjl56vzbrqi4j1"; depends=[broom ggplot2 maps rgdal rgeos sf sp spData]; }; oceanis = derive2 { name="oceanis"; version="1.8.4"; sha256="0m0mhab74wnd9hm0im47c14m5mzsrvs61d07vikd8f1sly36h943"; depends=[classInt dplyr DT ggplot2 leaflet leaflet_extras lwgeom mapview sf shiny shinyBS shinyjs shinythemes stringr zip]; }; oceanmap = derive2 { name="oceanmap"; version="0.1.1"; sha256="06h4yxqcn3rjr3m2n82w128z110a4k5rg6msrbd0gcqksxc4vd2v"; depends=[abind extrafont fields lubridate mapdata maps maptools ncdf4 plotrix raster sp]; }; @@ -13579,7 +13271,7 @@ in with self; { ocomposition = derive2 { name="ocomposition"; version="1.1"; sha256="0fk8ia95yjlvyvmjw7qg72piqa40kcqq9wlb3flc6a81pys1ycb5"; depends=[bayesm coda]; }; ocp = derive2 { name="ocp"; version="0.1.1"; sha256="0q52s8j3z3xwnma3sxx6019qxid66bf0a43w4g8xjagplwps57dx"; depends=[]; }; ocs4R = derive2 { name="ocs4R"; version="0.2-3"; sha256="09zl9jl1kzvyq0wccp41j32pr3as93qh250iaawhwkpcswjpyl89"; depends=[curl httr jsonlite keyring openssl R6 XML]; }; - od = derive2 { name="od"; version="0.3.1"; sha256="1fbx0w10wmd9f99kdigx4k21d8bsa8dfjzm9ibbf14z2908899ag"; depends=[sfheaders]; }; + od = derive2 { name="od"; version="0.4.0"; sha256="1mnf2dl3zj7zamibnv8ai0z2wbbwplzvjbzq3mswj6jc7386ja43"; depends=[sfheaders]; }; odbc = derive2 { name="odbc"; version="1.3.3"; sha256="1a5npspq91ksqp99nxicmdrm1703jk0gd9x6gl12i2rqf4qvwgwa"; depends=[bit64 blob DBI hms Rcpp rlang]; }; odds_converter = derive2 { name="odds.converter"; version="1.4.8"; sha256="09s8pg55gpsxmrbimzg5rsr1n07la93781sar6vab5p9zn9zxgx4"; depends=[]; }; odds_n_ends = derive2 { name="odds.n.ends"; version="0.1.4"; sha256="1md0m1z8a6jnmkjj2njngpqpasnvgngdxj57r3jc7jq356qzg707"; depends=[MASS]; }; @@ -13587,10 +13279,10 @@ in with self; { oddstream = derive2 { name="oddstream"; version="0.5.0"; sha256="1nwjw7fq6b4jdq4m2w0a7xgmzjg5a6pbma1d3r9msiz8rnhb0c54"; depends=[dplyr ggplot2 kernlab ks magrittr MASS mgcv moments mvtsplot pcaPP RColorBrewer RcppRoll reshape tibble tidyr]; }; odeGUTS = derive2 { name="odeGUTS"; version="1.0.1"; sha256="1c3w934dwh5jsh5z169isv9kqh8xbfgp4rk7k1sp8mj0kvy8nqc4"; depends=[deSolve dplyr magrittr tidyr zoo]; }; odeintr = derive2 { name="odeintr"; version="1.7.1"; sha256="0wfb5lgv10p0qyfbn9hdg14bda37v43lpgbwv6nbw63zzbsbazqi"; depends=[BH Rcpp]; }; - odin = derive2 { name="odin"; version="1.2.1"; sha256="0xx31wyjdmad66ijwks64irf0j78hdjcifs5i8pla587xyv26ykk"; depends=[cinterpolate deSolve digest glue jsonlite R6 ring withr]; }; + odin = derive2 { name="odin"; version="1.2.4"; sha256="0m8afhbpjdcdscgw7ngsdr7n8qpxicn3pqjrsjbwi4hrk5aii7ry"; depends=[cinterpolate deSolve digest glue jsonlite R6 ring withr]; }; odk = derive2 { name="odk"; version="1.5"; sha256="0fcnr4c1clwx1sk6fgg4cx506gdi90n2h05g0i47p4s5bra0qwwl"; depends=[gsheet openxlsx]; }; odpc = derive2 { name="odpc"; version="2.0.5"; sha256="0cbkq8parb8br1j386xk5mgwz8gkmwvp79f9sjvzhs7z6wlbp0pv"; depends=[doParallel foreach forecast MASS Rcpp RcppArmadillo]; }; - odr = derive2 { name="odr"; version="1.2.1"; sha256="1k5qr5s28x14k831l92gx3zwfadq0q7nbnxj172hadhmggxfhkqc"; depends=[]; }; + odr = derive2 { name="odr"; version="1.3.1"; sha256="185i81ixrm1mby5ryaymi4ixwxnx84g8f1zv6qbb1aj0wf1rxsng"; depends=[]; }; oem = derive2 { name="oem"; version="2.0.10"; sha256="1nf9ja4l7b9gnnvv216dz9siy02432qgyg930vcrqq3l8g05r6zc"; depends=[BH bigmemory foreach Matrix Rcpp RcppArmadillo RcppEigen]; }; oenb = derive2 { name="oenb"; version="0.0.2"; sha256="1jgxw7ycx2lcdzglg9nix8k08fs4r6i5jdsjzrd6w1dg6smsinl5"; depends=[dplyr XML]; }; ofGEM = derive2 { name="ofGEM"; version="1.0"; sha256="0xdkl8k12an9pdy6i5nay4m2iakrwsp0lr3zl8gphii75j0ywz7k"; depends=[CompQuadForm forestplot MASS]; }; @@ -13623,7 +13315,6 @@ in with self; { onbrand = derive2 { name="onbrand"; version="1.0.2"; sha256="1dxwxf0jy0cvizwdk0429x4bgzrk99mr1frfrf8hdw18ysjqwcfz"; depends=[dplyr flextable ggplot2 magrittr officer rlang stringr yaml]; }; onc_api = derive2 { name="onc.api"; version="2.0.1.0"; sha256="10scbhg6aniqzrbkblhfhz9ni710xzppbzfrr4wrhsy1z5y2nfwc"; depends=[anytime crayon httr humanize lubridate stringi testthat tictoc]; }; oncoPredict = derive2 { name="oncoPredict"; version="0.2"; sha256="1slq5vp78n5hcq24vlg35r6xansdgriyjw8y9iyb0lj3cdaq38c3"; depends=[BiocGenerics car gdata genefilter GenomicFeatures GenomicRanges glmnet IRanges maftools org_Hs_eg_db pls preprocessCore readxl ridge S4Vectors sva tidyverse TxDb_Hsapiens_UCSC_hg19_knownGene]; }; - oncomodel = derive2 { name="oncomodel"; version="1.0"; sha256="1jyyq9znffiv7rg26mjldbwc5yi2f4f8npsd2ykhxyacb3g96fp1"; depends=[ade4]; }; oncrawlR = derive2 { name="oncrawlR"; version="0.2.0"; sha256="0cm26diaf3jlzfrpgh13q0hakakmj6vy41wk9z0w81az4jcg9sn9"; depends=[caret DALEX dplyr e1071 formattable fs ggplot2 htmltools jsonlite pdp pROC RCurl readr rjson rlang rlist scales sparkline tidyr webshot xgboost]; }; ondisc = derive2 { name="ondisc"; version="1.0.0"; sha256="071jrldclkaz5lfp3k5fh1ilpgvvcnakh2vvnr69n3pri9dl3fls"; depends=[crayon data_table dplyr magrittr Matrix Rcpp readr rhdf5 Rhdf5lib]; }; oneclust = derive2 { name="oneclust"; version="0.2.1"; sha256="04nafy0bv3g5vjd5k7858lvs9rc141kzpblsdcb7sl4kfw76s11z"; depends=[magrittr Rcpp]; }; @@ -13634,12 +13325,11 @@ in with self; { onepass = derive2 { name="onepass"; version="0.1.2"; sha256="1r8wk00aqc0sc7l6mmy1k4hkijfikynysrx5vvahbd6mlcdb3bmp"; depends=[jsonlite]; }; onewaytests = derive2 { name="onewaytests"; version="2.6"; sha256="05q2ir65x9pvsiim4l029hjhm12niiqjgk5rsx47i6vx23ffg8ir"; depends=[car ggplot2 moments nortest]; }; onion = derive2 { name="onion"; version="1.5-0"; sha256="07q5wwphb6jsk7ya7hgsf5782yalvhyc7h43hsd9rg4rhpmy8in9"; depends=[emulator]; }; - onlineBcp = derive2 { name="onlineBcp"; version="0.1.5"; sha256="0sgc77wy6q7fgrvpn5izphg0wyfylp03mb5b1j8wwf6kpspf409q"; depends=[VIM]; }; + onlineBcp = derive2 { name="onlineBcp"; version="0.1.6"; sha256="0ylxyv8a7hhy1bqmr3wah1nhz6kzp6z6ai03qz88ypy96ly6mvyr"; depends=[VIM]; }; onlineCOV = derive2 { name="onlineCOV"; version="1.3"; sha256="04ikvsd76f6xhja7djyv433m88lfj2vf0y9qi6x1s4i9kh8xkbz9"; depends=[]; }; onlinePCA = derive2 { name="onlinePCA"; version="1.3.1"; sha256="08qivsfnwz5vp089lv9czsaz3nfi42kn9yhgzf27dji18y2xscic"; depends=[Rcpp RcppArmadillo RSpectra]; }; - onlineVAR = derive2 { name="onlineVAR"; version="0.1-1"; sha256="01z2d91mbdjvwwiqjq1dbqp50jbc9v6d7nw4gs7d1abhsqyiqa13"; depends=[lattice]; }; + onlineforecast = derive2 { name="onlineforecast"; version="1.0.1"; sha256="0cpwb6bx1qcf05rbi5ycdpgmfb0c5lvhki1c77kzhds5bn3gw5k4"; depends=[digest pbs R6 Rcpp RcppArmadillo]; }; onlineretail = derive2 { name="onlineretail"; version="0.1.2"; sha256="0lid3g4v51c664304cxgjm209qxv88hqglv89frmj4afc0y6k7sc"; depends=[]; }; - onls = derive2 { name="onls"; version="0.1-1"; sha256="0m7pnlzkqwzi6jncjzxzfvznipd4wg03zd9fc0ymwm9jvhm4p14g"; depends=[minpack_lm]; }; onnx = derive2 { name="onnx"; version="0.0.3"; sha256="1s0swrcff9v9ffbjkraahmb398gh2jrca2wf5k6gs8037frnl8wd"; depends=[reticulate]; }; onpoint = derive2 { name="onpoint"; version="1.0.2"; sha256="0l1dblj6cr2qagxmgx5ma455qazg1br5y0zpl2dv7jcdb24f7pnq"; depends=[ggplot2 spatstat_core spatstat_geom spatstat_random]; }; onsr = derive2 { name="onsr"; version="1.0.1"; sha256="0qazwqdbbinsrimn7rf7xcjz5l5zp372i5j54rp87xy098q7c0l3"; depends=[httr jsonlite readr tibble]; }; @@ -13649,12 +13339,13 @@ in with self; { ontologySimilarity = derive2 { name="ontologySimilarity"; version="2.5"; sha256="035z572lbsfcnr9c0hl8gir1kgk0dw8dxzr3v8dqd93k6jr6kaxb"; depends=[ontologyIndex Rcpp]; }; oolong = derive2 { name="oolong"; version="0.4.1"; sha256="16f5r2z9p87k3pi643s63nxxnh7gn4x70m5jpk48hwb2s1rdar9h"; depends=[cli cowplot digest ggplot2 irr keyATM purrr quanteda R6 shiny tibble]; }; oompaBase = derive2 { name="oompaBase"; version="3.2.9"; sha256="1cmw2s5dznmv675484jgvkzgvi6vhg0zbxsq6zhpqsisf672pjhl"; depends=[cluster]; }; - oompaData = derive2 { name="oompaData"; version="3.1.1"; sha256="0by9qfxlx6fdmp12qnphlli5hdn5balvx4ckg64fw6vwa291g7b0"; depends=[]; }; + oompaData = derive2 { name="oompaData"; version="3.1.2"; sha256="11c5h55xjvbavyqy9z2ch03ngy739zs61r8r4lc2gijscc7wn1s4"; depends=[]; }; ooplah = derive2 { name="ooplah"; version="0.2.0"; sha256="1p74jh9g62yicrw0lhpbn0diqi2myl24z28kpd2b3mglyffadr0b"; depends=[R6]; }; oops = derive2 { name="oops"; version="0.2.0"; sha256="0xg69riqphvsqqa953v4mlcakvl0invf29678nrljibg31n4wak5"; depends=[]; }; + oottest = derive2 { name="oottest"; version="0.9.1"; sha256="1y0k0jcncjkcgfxybs2yyfcc7ywa49jnalrw8mn7m04h58gqg77x"; depends=[]; }; opGMMassessment = derive2 { name="opGMMassessment"; version="0.3"; sha256="1y6g65y6r3l0p7dbw70w8lbp4c888llwd7ak9wliwin0a54y13lz"; depends=[AdaptGauss caTools cluster ClusterR DataVisualizations DistributionOptimization doParallel dplyr foreach ggplot2 mclust mixAK mixtools multimode NbClust rlang]; }; opa = derive2 { name="opa"; version="0.3.6"; sha256="1xybfpb2dzh00a38jq5b81ajqyjp3nnjnlmxnlqgmp4vcy7q3ysn"; depends=[cpp11 ggplot2 Rcpp]; }; - opalr = derive2 { name="opalr"; version="3.0.2"; sha256="0nwa77l4d4zz3jxmfgm8h8k823lvcvjzbk3i6ahscrhzw2ky2phc"; depends=[httr jsonlite labelled mime progress]; }; + opalr = derive2 { name="opalr"; version="3.1.0"; sha256="0p5nrqhdm20j05mzqlb83pplrr3hfy4x79w6wlc55h3s71cjnvx5"; depends=[httr jsonlite labelled mime progress]; }; opdisDownsampling = derive2 { name="opdisDownsampling"; version="0.8.1"; sha256="18y2p13q9ib5siml00ycjq395saqpnn0wa0jf2936v48ji4kjjzp"; depends=[benchmarkme caTools doParallel foreach memuse pracma twosamples]; }; openCR = derive2 { name="openCR"; version="2.2.2"; sha256="1w3lrlc4w60fv026sbvmdki2jvg45m8mlbidwyd749vm93i3w6cs"; depends=[abind BH MASS nlme plyr Rcpp RcppParallel secr stringr]; }; openEBGM = derive2 { name="openEBGM"; version="0.8.3"; sha256="120lp7fy6abj6f8g6naq4018d0dfzz6bq3dlh0xdhd4iclb7pplv"; depends=[data_table ggplot2]; }; @@ -13666,17 +13357,18 @@ in with self; { openVA = derive2 { name="openVA"; version="1.0.14"; sha256="05pz9kyfc3z7g0zkjp9mckrimba9bf8krzfj3phy5skwrb5fm2sf"; depends=[cli crayon ggplot2 InSilicoVA InterVA4 InterVA5 Tariff]; }; openadds = derive2 { name="openadds"; version="0.2.0"; sha256="1jb8zd3rpxfkjkg895iab6m4cfi53p5vy3nnpjkgq7ym6499qjcv"; depends=[crul dplyr jsonlite maptools rappdirs readr tibble xml2]; }; openair = derive2 { name="openair"; version="2.9-1"; sha256="0323f3lhwnv8ibbdjyn5y0c8p18d0dwrwrsxrvixsxdzkb641j2f"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr Rcpp readr tidyr]; }; + openalexR = derive2 { name="openalexR"; version="0.0.1"; sha256="1zclqqkhh14jzddl1mpx4jihd55naw2s3hjdr0b4jpcmfrnmkls4"; depends=[dplyr httr jsonlite magrittr progress tibble]; }; openbankeR = derive2 { name="openbankeR"; version="0.1.1"; sha256="04jh3nnp53dzbk96dcz0xi67jqmp66mzbj81cy8mhhd2rl5ry9cj"; depends=[dplyr glue httpcode httr jsonlite magrittr tidyr]; }; openblender = derive2 { name="openblender"; version="0.5.81"; sha256="01akixxj04kgrxhv04icrivfpnipnpg9j62i3y19q3jkl9846lh1"; depends=[httr jsonlite]; }; opencage = derive2 { name="opencage"; version="0.2.2"; sha256="1sjkpp6cj6ivd68p6ql6vwgdvy0fwfkjv84wgwgb4i7f4mnxgnff"; depends=[crul dplyr jsonlite lifecycle memoise progress purrr ratelimitr rlang tibble tidyr withr]; }; opencpu = derive2 { name="opencpu"; version="2.2.7"; sha256="06jpmk95hm39ib5c75xw0mdrdv9x9zz1qil3m8ysb6pp1xx47jz0"; depends=[brew curl evaluate httpuv jsonlite knitr mime openssl protolite rappdirs remotes sys webutils zip]; }; - opencv = derive2 { name="opencv"; version="0.2.1"; sha256="1zb6qdvlgylzm9afq8ybcrn2w5wcym6zi4b36sycp4clbc7gncq5"; depends=[magrittr Rcpp]; }; - opendatatoronto = derive2 { name="opendatatoronto"; version="0.1.4"; sha256="0ggf25ry31xz69fl95cglg45ld8w7rc83wci609fmb63bhj8dzlg"; depends=[ckanr curl magrittr readxl sf tibble xml2]; }; + opencv = derive2 { name="opencv"; version="0.2.2"; sha256="0m17bykhmz29z1zzcl6cxrqg19acxajhmb7qcja9zfdvd6rs3rn5"; depends=[magrittr Rcpp]; }; + opendatatoronto = derive2 { name="opendatatoronto"; version="0.1.5"; sha256="1fiviazs0ydxvmsqaayhwnxf4wl4sx1psn8i5mpis7218d9ihagy"; depends=[ckanr curl magrittr readxl sf tibble xml2]; }; opendotaR = derive2 { name="opendotaR"; version="0.1.4"; sha256="17cygsw3nkg6zincfrcdh1509rlz3n5zrv9wvv7mjngm61sn79nf"; depends=[dplyr jsonlite lubridate]; }; - openeo = derive2 { name="openeo"; version="1.1.0"; sha256="1vdga91jiw2dxfvjwr12kip60m8pdcvsan3g9cn9hhhpxsgidw6q"; depends=[base64enc httr jsonlite lubridate R6]; }; + openeo = derive2 { name="openeo"; version="1.2.0"; sha256="1vm59p5cmm7h9mrrmw7kdlw69bv05m30ns7hajfqvri3rfp3f962"; depends=[base64enc htmltools httr2 IRdisplay jsonlite lubridate R6 rlang sf]; }; openintro = derive2 { name="openintro"; version="2.3.0"; sha256="0iknd0sk28qwm09zcs1dqqwlq28ph00swp75rbp6sfl0ypcnm7m5"; depends=[airports cherryblossom ggplot2 readr rmarkdown tibble usdata]; }; openmetrics = derive2 { name="openmetrics"; version="0.3.0"; sha256="0bcljsirlkxn0h87j2g2jb6spcik84h7nms06mcj40ckx188yr82"; depends=[R6]; }; - openssl = derive2 { name="openssl"; version="2.0.0"; sha256="0jsnzxa72bfxsdai25xyklmmrraaf9yv2nmqmf0bgzrkbzkgsa7b"; depends=[askpass]; }; + openssl = derive2 { name="openssl"; version="2.0.1"; sha256="0v7kx3i2mrklwkdvz2c61z1vcav751y4fbji7ny6bzbv3nzp2rqw"; depends=[askpass]; }; opentimsr = derive2 { name="opentimsr"; version="1.0.13"; sha256="0m4xp70cq4h76r4qk7krn5p9w3xv44z5lrkpys7kbvxr38g5y0il"; depends=[DBI Rcpp RSQLite]; }; opentraj = derive2 { name="opentraj"; version="1.0"; sha256="13nqal96199l8vkgmkvl542ksnappkscb6rbdmdapxyi977qrgxk"; depends=[doParallel foreach maptools openair plyr raster reshape rgdal sp]; }; opentripplanner = derive2 { name="opentripplanner"; version="0.4.0"; sha256="1q0szrbgcjzc7ny08gilv2q0v1x81i626mzsahkii79qqb7capr1"; depends=[checkmate curl data_table geodist googlePolylines lubridate pbapply rjson sf sfheaders]; }; @@ -13686,15 +13378,13 @@ in with self; { operators = derive2 { name="operators"; version="0.1-8"; sha256="0zgcv2q46qyqv4dhbd33s4044zjw38w8dqfpzs0c1lxjpkil3dnx"; depends=[]; }; opitools = derive2 { name="opitools"; version="1.8.0"; sha256="1w5s78dxz03asxc46mn5vy9y21dr6km12ms563cgcaf9g9rw9dqc"; depends=[cowplot dplyr forcats ggplot2 likert magrittr purrr stringr tibble tidyr tidytext tm wordcloud2]; }; oppr = derive2 { name="oppr"; version="1.0.3"; sha256="1j1zwy73k2hjap22df16cr80vifq8jdl7sqd8mjk1gqa25nwfp27"; depends=[ape assertthat cli ggplot2 lpSolveAPI magrittr Matrix proto Rcpp RcppArmadillo RcppProgress tibble tidytree uuid viridisLite withr]; }; - optAUC = derive2 { name="optAUC"; version="1.0"; sha256="0j1llzqa3n7kqw3i5bb7284z0hi6s5jbjfl9zap0l7xf6hg4x1dn"; depends=[MASS]; }; optBiomarker = derive2 { name="optBiomarker"; version="1.0-28"; sha256="10i9ir0056qxyiayg10v6v25m1b94m1wd7c8ssigiqjhjncpddw5"; depends=[e1071 ipred MASS Matrix msm randomForest rgl rpanel]; }; - optCluster = derive2 { name="optCluster"; version="1.3.0"; sha256="0vzdd9awxli0zzyh2xb7j7wxza3fz5awyz6bjwf13qbjrrq43q2q"; depends=[cluster gplots kohonen MBCluster_Seq mclust RankAggreg]; }; + optCluster = derive2 { name="optCluster"; version="1.3.2"; sha256="11k6mbkwmvhmcvnc4hgl8aa3j7n7im5g3040dgppahzdndysgnw3"; depends=[cluster gplots kohonen MBCluster_Seq mclust RankAggreg]; }; optR = derive2 { name="optR"; version="1.2.5"; sha256="0q7jf4m0gzm11izl5lff17pvr855smqmc6zzi1bc7m6h3z865l32"; depends=[]; }; optbdmaeAT = derive2 { name="optbdmaeAT"; version="1.0.1"; sha256="1y1mvcyjihpj1wgjmifhmd10717wr1srp7h87azs4gfypgsiqchn"; depends=[igraph MASS Matrix]; }; optbin = derive2 { name="optbin"; version="1.1"; sha256="1v79qq1az8sg1slh9k3rqznw3dmppg0d0x7i2j5sz78b8gfq2m17"; depends=[]; }; optedr = derive2 { name="optedr"; version="1.0.1"; sha256="0ywq5s3y30r0il2vsd99qgd8m7c1xsk59fgzz8zs5ips3xsjmnwg"; depends=[cli crayon dplyr DT ggplot2 hrbrthemes magrittr nleqslv orthopolynom plotly purrr rlang shiny shinyalert shinydashboard shinyjs]; }; optextras = derive2 { name="optextras"; version="2019-12.4"; sha256="1sqkid6h13h8i8wzri26s828ycwlxlwpwxd85r8bw9h8hs1n602r"; depends=[numDeriv]; }; - optiRum = derive2 { name="optiRum"; version="0.40.1"; sha256="1kl9mzh53pwhrxbn89dsjjpfji7k8vmysscd1qd9sw7vqdan8g6x"; depends=[AUC data_table ggplot2 knitr plyr scales stringr XML]; }; optiSel = derive2 { name="optiSel"; version="2.0.5"; sha256="13rxv6wqz5gpmsfb96173p1y8140zqj4llihxsvjczcqwhrayjha"; depends=[data_table doParallel ECOSolveR foreach kinship2 magic MASS Matrix nadiv optiSolve pedigree plyr pspline purrr quadprog Rcpp RcppArmadillo reshape2 stringr]; }; optiSolve = derive2 { name="optiSolve"; version="1.0"; sha256="0mhl5gdz3y3cs3p6v7z4n50na3sqj0w739gixcf4qgb1ppx0h1xa"; depends=[alabama cccp MASS Matrix nloptr plyr Rcpp shapes stringr]; }; opticskxi = derive2 { name="opticskxi"; version="0.1"; sha256="1vdz5sgjgyh2nj034w87d2yxcbbg97f1b0vijlwzwjkrfz5knfhl"; depends=[ggplot2 magrittr]; }; @@ -13703,7 +13393,7 @@ in with self; { optigrab = derive2 { name="optigrab"; version="0.9.2.1"; sha256="1c3q4kx8rkgpjsy0hy2w2dd9kv51avnw1ab82hzmjgngfnvaig0n"; depends=[magrittr stringi]; }; optim_functions = derive2 { name="optim.functions"; version="0.1"; sha256="1la3v8yd9cdichp3mka4x86hr9lynh6qfg7h9ab6cwijw6kzkn6g"; depends=[lhs randtoolbox stringr]; }; optimCheck = derive2 { name="optimCheck"; version="1.0"; sha256="1qjkv1mfyn7sw0dkxxcdaqj85vl71cgffpf3k3mvzy0s8yhxjb4n"; depends=[]; }; - optimLanduse = derive2 { name="optimLanduse"; version="0.0.4"; sha256="0mwb1znl0f4ki64lrk9yfq7v6iffp9qdym36w6ab5lndcc9bqn0y"; depends=[dplyr lpSolveAPI tidyr]; }; + optimLanduse = derive2 { name="optimLanduse"; version="1.0.0"; sha256="18vsy8ymymk5vx3jga6pp6d0k4irjfk7jkp5qchmmj4pd3v4wllr"; depends=[dplyr lpSolveAPI tidyr]; }; optimParallel = derive2 { name="optimParallel"; version="1.0-2"; sha256="178ayfaivkbxkghxbg97lx4gl27kxkmgaaw9y8q5206r4cncd6qg"; depends=[]; }; optimStrat = derive2 { name="optimStrat"; version="2.3"; sha256="1jkwhgpw7nknd7h8c01z25x566bw2qb388i6g5nwcygxsshdgpri"; depends=[cubature mvtnorm shiny]; }; optimalThreshold = derive2 { name="optimalThreshold"; version="1.0"; sha256="1m39q36p7i7z31b90awriq5jf9rfybyw5lj3m1w33v2ssipkzp1n"; depends=[ars coda HDInterval mgcv rjags]; }; @@ -13715,13 +13405,13 @@ in with self; { optimr = derive2 { name="optimr"; version="2019-12.16"; sha256="003wz9r3xdi47ad22l4dkhp0dalknb2s9fp82yamjx7x1xbfvcbk"; depends=[numDeriv optextras Rcgmin Rvmmin setRNG]; }; optimsimplex = derive2 { name="optimsimplex"; version="1.0-8"; sha256="1q5hfbiq265q5im6wg78spaqsfj421hpzh8bz51zmi188h6xwnwr"; depends=[optimbase]; }; optimus = derive2 { name="optimus"; version="0.2.0"; sha256="01njyjfrm6kjwx2qq41c0hsgxzydnrmr3538cpbfdn5i0z5blgyx"; depends=[mvabund ordinal]; }; - optimx = derive2 { name="optimx"; version="2021-10.12"; sha256="0hvrpfya767vp3anmb8ih516v4zz1sv4h193rn93kyjydf2lqf1r"; depends=[numDeriv]; }; + optimx = derive2 { name="optimx"; version="2022-4.30"; sha256="045ls1vl1392ihwln6mngz0zg2w93ym1m607vfrg8v1949x8isgb"; depends=[numDeriv]; }; optinterv = derive2 { name="optinterv"; version="0.1.0"; sha256="1yvjb9fyqj3pfglfdwdq4kpw9i5g5i3klgpqb05xdnacbnpdxvmp"; depends=[boot distances Hmisc lattice pbapply rootSolve weights]; }; - optional = derive2 { name="optional"; version="2.0"; sha256="0hj0gwvk9svllv44kfdgv3a2mriwqnaxvn3rj7w1djha7mryl6jl"; depends=[magrittr]; }; + optional = derive2 { name="optional"; version="2.0.1"; sha256="1q7k9rsa7m3ag7mwx88101ksy0c01gk0xl0425jfkwm0d4g5pyy0"; depends=[magrittr]; }; optionstrat = derive2 { name="optionstrat"; version="1.4.1"; sha256="0vidaf888zdls5yxy7637fqg6r39l3rxw9bhn16s4xmag7kawljv"; depends=[]; }; optiscale = derive2 { name="optiscale"; version="1.2.2"; sha256="1ay2lfk4isv0gir5diwxlx4ml5bv5qyqbwm34py85fp6bh92987r"; depends=[lattice]; }; optistock = derive2 { name="optistock"; version="0.0.1"; sha256="1nyz64bfi4s10i4mq7crdkn3b3zqr674vfxkdd3kphjqk0wmiv1j"; depends=[]; }; - optmatch = derive2 { name="optmatch"; version="0.10.0"; sha256="1wx9xxp91dpnhxslmdphfjrcchp8ykwxksnd4vbyzcpg5y8bcraz"; depends=[Rcpp rlemon survey survival]; }; + optmatch = derive2 { name="optmatch"; version="0.10.2"; sha256="07i53nj1rrbqmmraxaiv9sp589clypik5xwn7a86n1ghxfnrf41q"; depends=[Rcpp rlemon]; }; optparse = derive2 { name="optparse"; version="1.7.1"; sha256="1rqz0y4r94y3mwbb9kyz97cjqpnprka96qbncvbnbmgg2d630kij"; depends=[getopt]; }; optpart = derive2 { name="optpart"; version="3.0-3"; sha256="18h659gbgzflq81lcchc058xjgljkmhpsjkh51ylygwrv1qjrz2i"; depends=[cluster labdsv MASS plotrix]; }; optrcdmaeAT = derive2 { name="optrcdmaeAT"; version="1.0.0"; sha256="16g4612mwyfsckn6l71fbrjnnjv4yvnac1cccbrn3k8jh07qgb1h"; depends=[igraph MASS Matrix]; }; @@ -13736,7 +13426,6 @@ in with self; { ordPens = derive2 { name="ordPens"; version="1.0.0"; sha256="1q6v3xkaahpzkycjnn75a62narwj4g86ha9m786nfp941ql44vlr"; depends=[glmpath grplasso mgcv quadprog RLRsim]; }; ordbetareg = derive2 { name="ordbetareg"; version="0.2.1"; sha256="0qxb5vx56250l4l5gk1drrzjwhm74267g98145cn8lwykcwh7vdp"; depends=[brms dplyr faux tidyr]; }; ordcrm = derive2 { name="ordcrm"; version="1.0.0"; sha256="1hy24s23l099b21w5j3p2f0748s8xmhxhslfp65fg7ycwda5qsyw"; depends=[rms]; }; - orderbook = derive2 { name="orderbook"; version="1.03"; sha256="0dlvjrzdhhh8js4g1lvxs46q7fdxfxavxnb4nj6xlwca75i51675"; depends=[hash lattice]; }; ordering = derive2 { name="ordering"; version="0.7.0"; sha256="0sgwgcjg6sazmi11c9qvxfrzg671kcp18i2q20xbmbj4v3yqhwbh"; depends=[]; }; orderly = derive2 { name="orderly"; version="1.4.3"; sha256="0k7xk64schhw9jdbg50hlnf6gfhlgnv1n20rz3fga02z38441xkn"; depends=[crayon DBI digest docopt fs gert ids R6 RSQLite withr yaml zip]; }; orders = derive2 { name="orders"; version="0.1.6"; sha256="0b1ysq22qhdzs5fb63m786iil0rkb9qsj9p730izn7dg3zx36gl1"; depends=[actuar gamlss_dist Newdistns]; }; @@ -13756,7 +13445,6 @@ in with self; { oreo = derive2 { name="oreo"; version="1.0"; sha256="1qzv6fjana5fx45msqasqfniiancsch6j8r1llh1xyg2wjhqdj23"; depends=[fftwtools ggplot2 gridExtra openxlsx pracma scales spectral]; }; ores = derive2 { name="ores"; version="0.3.2"; sha256="0xzc0d38z7h5ghab3kqsv0r2cl3888j7vn94p51xlwcbhnq10kip"; depends=[httr]; }; orf = derive2 { name="orf"; version="0.1.3"; sha256="19drrxvnh9y33p0g8pv9bhl6i8jpsdc7nkcpbpxbrsc5hs96dycp"; depends=[ggplot2 ranger Rcpp xtable]; }; - org = derive2 { name="org"; version="2019.4.2"; sha256="0jrnr22slgzwsdb4a1jb1l878smhvfb680cgmgb3a88jqj4jfscl"; depends=[]; }; orgR = derive2 { name="orgR"; version="0.9.0"; sha256="1q4qbwnbhmja8rqiph7g7m4wxhzhk9mh91x1jgbnky8bs4ljdgrx"; depends=[data_table ggplot2 ggthemes lubridate stringr]; }; orgutils = derive2 { name="orgutils"; version="0.4-1"; sha256="1yc3avhq3786his7nd60zfbzd9inkfrfz938r8378z59zbb1mzqq"; depends=[textutils]; }; orientlib = derive2 { name="orientlib"; version="0.10.4"; sha256="0lds3y05byag466asi8hmv1yfllsdx7z5i8hq21r6dx3w4n4f46x"; depends=[]; }; @@ -13767,13 +13455,13 @@ in with self; { ormBigData = derive2 { name="ormBigData"; version="0.0.1"; sha256="1rq202k4assmij21bjjk1ba7121p5p3rp21k548cc6lk81xj1rcc"; depends=[benchmarkme doParallel foreach Hmisc iterators rms SparseM]; }; ormPlot = derive2 { name="ormPlot"; version="0.3.4"; sha256="1s38alb602javkizxp3gqkmsq6zvl983gv4bcgd8752fvvddbf4s"; depends=[ggplot2 gtable rms]; }; oro_dicom = derive2 { name="oro.dicom"; version="0.5.3"; sha256="1ar70xk2bqk7jgckfivgp4np3dxaynmgdg41n8x0sg9cpxl2lc38"; depends=[oro_nifti]; }; - oro_nifti = derive2 { name="oro.nifti"; version="0.11.0"; sha256="1kmlc82gp02v4p62kaxvv55rizbs6znphr0dpka8fl4addgld4si"; depends=[abind bitops RNifti]; }; + oro_nifti = derive2 { name="oro.nifti"; version="0.11.1"; sha256="0xwvfc4s62651y4jhy5965fq3053mfx8dzvvqkdq64rrfazskbz7"; depends=[abind bitops RNifti]; }; oro_pet = derive2 { name="oro.pet"; version="0.2.6"; sha256="1dczii7knh9241ksswxk9zg1d69mhk2ilrk4kjv7cj9nfm8fgmja"; depends=[minpack_lm msm oro_dicom oro_nifti]; }; orsifronts = derive2 { name="orsifronts"; version="0.2.0"; sha256="0nxhijiqhhrxwrm5fy619lsdqyji43xyfqg4309pfb7da4377i3q"; depends=[sp]; }; orsk = derive2 { name="orsk"; version="1.0-6"; sha256="18qhjnpp4cmgr2ynnkxd2lych2jfkxqc9m71xmh9dp6934qc8n0b"; depends=[BB BHH2]; }; orthoDr = derive2 { name="orthoDr"; version="0.6.4"; sha256="1h2djq1s67yx1mkc5hl81471q4qwv8z71hmyl5rvbwy8kfyxfc6b"; depends=[dr MASS plot3D pracma Rcpp RcppArmadillo rgl survival]; }; orthogonalsplinebasis = derive2 { name="orthogonalsplinebasis"; version="0.1.6"; sha256="07rbd0fhs2gsk7wj41y2h7wf6pfg324vzv2al753d8kqyx5ns2dj"; depends=[]; }; - orthopolynom = derive2 { name="orthopolynom"; version="1.0-5"; sha256="1gvhqx6jlh06hjmkmbsl83gri0gncrm3rkliyzyzmj75m8vz993d"; depends=[polynom]; }; + orthopolynom = derive2 { name="orthopolynom"; version="1.0-6"; sha256="0nyczb55cxp4zg9s73knlyj4j6qnxprclncljni7v4jc6xbn2mqp"; depends=[polynom]; }; osDesign = derive2 { name="osDesign"; version="1.8"; sha256="0l5dq8rj4rg4v324610kj2j5nv7py6z1jcplhb6br1gvldj7ng1d"; depends=[]; }; osc = derive2 { name="osc"; version="1.0.5"; sha256="00a0ys5ni0hg5zxi0sr5ak3n4c252vhvd6gynnx1b0lqna7bz9qi"; depends=[raster]; }; osd = derive2 { name="osd"; version="0.1"; sha256="1py9p15nrcydr8w9ilxkxabiz9zlqnls8xn9avjkxd8x6602jx6p"; depends=[JADE nnls]; }; @@ -13783,10 +13471,8 @@ in with self; { osmar = derive2 { name="osmar"; version="1.1-7"; sha256="0q6d8nw7d580bnx66mjc282dx45zw9srczz90b520hjcli4w3i3r"; depends=[geosphere RCurl XML]; }; osmdata = derive2 { name="osmdata"; version="0.1.9"; sha256="01w6ikqv4cl5x6zs4pzx4fgrdcgia53c9gqwd52f5pmg088pj1x9"; depends=[curl httr jsonlite lubridate magrittr Rcpp reproj rvest sp tibble xml2]; }; osmextract = derive2 { name="osmextract"; version="0.4.0"; sha256="027mwp909xa2i32ibgig6kqazwy8kqyyqyjiyaqhpajm17kfb011"; depends=[httr jsonlite sf]; }; - osmgeosample = derive2 { name="osmgeosample"; version="0.1"; sha256="1vcdisf147mcdqkc35czcphjh6rhaix9vy6l5inknaarmmajri3x"; depends=[dplyr geoR mapview nngeo osmdata pdist processx qpdf Rcpp rgdal sf sp splancs tibble]; }; osmose = derive2 { name="osmose"; version="3.3.4"; sha256="144mklbish59amzz7j95qmn98yqlz3bqzd2rp03wg9f5s69bxjj6"; depends=[fields knitr mgcv ncdf4 rlist rmarkdown stringr]; }; osmplotr = derive2 { name="osmplotr"; version="0.3.3"; sha256="0p94phv7jn0q9k25300zz59ldfphm9xgy6i7n3r8xj4zay0c7mf2"; depends=[e1071 ggm ggplot2 mapproj osmdata rgeos sp spatstat spatstat_core spatstat_geom]; }; - ospsuite_utils = derive2 { name="ospsuite.utils"; version="1.2.0"; sha256="16gcqnkqz0nz7mhgbnji3p1k2vv43jypx2xbcz4i4d8v1368akly"; depends=[R6]; }; osqp = derive2 { name="osqp"; version="0.6.0.5"; sha256="1djsd2fval9g18vx1dym8bnsnlv8p166zfyzdsj105ydn346kz08"; depends=[Matrix R6 Rcpp]; }; osrm = derive2 { name="osrm"; version="3.5.1"; sha256="1fii7xgcnrqmfp9rak6hfn6fh5pgwvww2nj9zfmrz6ams22ac6sw"; depends=[curl googlePolylines isoband jsonlite sf]; }; osrmr = derive2 { name="osrmr"; version="0.1.36"; sha256="1vnf6g1d9fjckz9ay910nb9gr1km2adwk3b0k460mxvpr36izkh7"; depends=[assertthat bitops R_utils rjson stringr]; }; @@ -13799,7 +13485,6 @@ in with self; { ottr = derive2 { name="ottr"; version="1.1.4"; sha256="09irwppgcz97933dgxyc6z9k60j3a9n3idh009rq8bfk6rk7krss"; depends=[jsonlite pryr R6 testthat yaml zip]; }; ottrpal = derive2 { name="ottrpal"; version="1.0.1"; sha256="02y917r48mqkga27f8019cdbx4mh45dr8l9s2ai1anxgvccnb4yi"; depends=[bookdown curl dplyr fs glue httr knitr magrittr purrr R_utils readr rmarkdown rprojroot rvest stringr xml2 yaml]; }; otuSummary = derive2 { name="otuSummary"; version="0.1.1"; sha256="04l667qmp7wqkbdsk87j92gf89s13090kzs8cjlmxsp6i69r34z2"; depends=[reshape2 vegan]; }; - otvPlots = derive2 { name="otvPlots"; version="0.2.1"; sha256="0fjx0kl9y77mazwy7lg4mxc9sg8ysvvbl4h3k6bvfpnjm5x62hff"; depends=[data_table ggplot2 gridExtra Hmisc moments quantreg scales stringi]; }; ouch = derive2 { name="ouch"; version="2.17"; sha256="1a7r24j59xz3lxa5wc694j6b80j8m5l86zd1sw9pvs66l8gd98kf"; depends=[subplex]; }; outForest = derive2 { name="outForest"; version="0.1.2"; sha256="0329yrqknr894l5dp7zdbr0mifrafx9km074yqjfbnxbi245fd65"; depends=[FNN missRanger ranger]; }; outbreaker2 = derive2 { name="outbreaker2"; version="1.1.2"; sha256="0za20xl76i17pi2w2l69yiqrhfiichk4mngn062vv1hvqz4qgx4r"; depends=[ape ggplot2 magrittr Rcpp visNetwork]; }; @@ -13816,7 +13501,7 @@ in with self; { overlapping = derive2 { name="overlapping"; version="1.7"; sha256="1r54h4vn9nxhljhqrmzrrzaghbqzagcbnq64s86cy78kyq576xs2"; depends=[ggplot2 testthat]; }; overlapptest = derive2 { name="overlapptest"; version="1.2-4"; sha256="148vswcvy0anw6xrpfsskjn0i7jkn0jbfqlaf4bb13pkini2bahf"; depends=[spatstat_geom]; }; overture = derive2 { name="overture"; version="0.4-0"; sha256="1s16x5kn0apb0w1f7hqzcsqvw3x621y5n6yr1qn7yb7431pdw3cz"; depends=[bigmemory]; }; - overviewR = derive2 { name="overviewR"; version="0.0.7"; sha256="1y8iqgyhppl2w9z59azi3h1kgzrw5a1zqw09zyjp0ghlvpjbn9cn"; depends=[dplyr ggplot2 tibble]; }; + overviewR = derive2 { name="overviewR"; version="0.0.10"; sha256="1y3drjkcxhmadnjzib4d6p2gj294rpf4i1vl4lj2fw5y2rzcq798"; depends=[data_table dplyr ggplot2 ggrepel ggvenn rlang tibble tidyr]; }; owd = derive2 { name="owd"; version="1.0.6"; sha256="08f1zzlnkfdzm5rlw14qm6yvn68j2yas21zjsy31pc59rh3lzkyh"; depends=[]; }; owdbr = derive2 { name="owdbr"; version="1.0.1.1"; sha256="0q4654zr5aw04sssy7127vafry72b7p3d8i44fqvqg3055awin0i"; depends=[data_table dplyr httr jsonlite magrittr tibble]; }; owidR = derive2 { name="owidR"; version="1.2.1"; sha256="0y77n42gr7i0w9d8flchr3dv55g7yb9xmbxffmfkqx2f7fszf8dz"; depends=[curl dplyr forcats ggplot2 ggrepel htmltools httr jsonlite leaflet magrittr purrr readr rlang rvest scales sf stringr xml2]; }; @@ -13827,7 +13512,6 @@ in with self; { oysteR = derive2 { name="oysteR"; version="0.1.1"; sha256="11zg959h9104hh8wid4003s8c4z9xhmicj39cc5vq1j8g1g7ilr7"; depends=[cli dplyr glue httr jsonlite purrr rjson rlang stringr tibble tidyr yaml]; }; oz = derive2 { name="oz"; version="1.0-21"; sha256="0p4r8qbpv7q6vad940540pd3lk79pyfj41h2cn22hsy1j0va1qbv"; depends=[]; }; ozmaps = derive2 { name="ozmaps"; version="0.4.5"; sha256="0sqxaiw1mdcg81228g7k7r6fla6d7hfk9ax2z6pws8457xbvrzka"; depends=[oz sf tibble]; }; - p2distance = derive2 { name="p2distance"; version="1.0.1"; sha256="1ims8i5z5k97kjpdysgx8g7lgvnvf7amahcrssw7bk38bvbxawni"; depends=[]; }; p3state_msm = derive2 { name="p3state.msm"; version="1.3"; sha256="0gbrka62ylxx64r3abpk60y92k2lk5smlf8na68qazph8llsl2rv"; depends=[survival]; }; pARI = derive2 { name="pARI"; version="1.1.1"; sha256="17dxrs4ckxh70d33n93bxr0gzsidychnyclwvnb42cqfplbndca5"; depends=[ARIbrain matrixStats plyr Rcpp RcppArmadillo RNifti]; }; pAnalysis = derive2 { name="pAnalysis"; version="2.0"; sha256="0pykdlbynzgcbnjs8xs8frgncf53l8qgf6na34adq7da76n570hi"; depends=[coin ggplot2]; }; @@ -13840,15 +13524,13 @@ in with self; { pRF = derive2 { name="pRF"; version="1.2"; sha256="17srabk7mam16rdzc5g9ggdrhjjk8wibny40gxvgzkv7qgq7m80x"; depends=[dplyr ggplot2 multtest permute randomForest reshape2]; }; pROC = derive2 { name="pROC"; version="1.18.0"; sha256="1abvbzdss12n64pp9vlgnn0q3abh0nj4n0a8cinwwvhphjrm9vym"; depends=[plyr Rcpp]; }; pRSR = derive2 { name="pRSR"; version="3.1.1"; sha256="1irx95b7cwvx3gpn9brjjn4k947m8frz542r18nilc9f1159mb3s"; depends=[]; }; - pRecipe = derive2 { name="pRecipe"; version="0.1.1"; sha256="05lhviyzsrfh1f7jfp77i9xk5nnj4k3kgynw8brxmkyjnr68rayf"; depends=[curl data_table dplyr gdalUtils getPass ggplot2 hdf5r lubridate maps ncdf4 R_utils raster rgdal sp stringr viridis zoo]; }; + pRecipe = derive2 { name="pRecipe"; version="0.2.0"; sha256="1w16fbqqid06lk7xm137pnrnw97sm1p7ainy5g71vrrr3qy67x8f"; depends=[curl data_table dplyr getPass ggplot2 hdf5r lubridate ncdf4 R_utils raster rgdal sf sp stringr viridis zoo]; }; pTITAN2 = derive2 { name="pTITAN2"; version="1.0.2"; sha256="1mwx7k8ql4l572xvwb5gns9n4kqk779wwm4sg7nbgzz8xvcdh665"; depends=[data_table]; }; - pa = derive2 { name="pa"; version="1.2-1"; sha256="1pfgzxirkb0p8f6smjlrbp1qpsh0vsvqf306cvldaj9zx8cw0q9f"; depends=[ggplot2]; }; - pacbpred = derive2 { name="pacbpred"; version="0.92.2"; sha256="13p405vh9rf1r5idxl5payc85vwlzcd87wm15163vc9gmil1ncsf"; depends=[]; }; + pa = derive2 { name="pa"; version="1.2-2"; sha256="0w76m169qghm8r3z319jv901ri136c9maa5j0r9kbgpdnq25v53w"; depends=[ggplot2]; }; pack = derive2 { name="pack"; version="0.1-1"; sha256="0x4p8clwp49s2y67y7in530xwhjngnqwagf9xnyb1jp0z3myd3r7"; depends=[]; }; packDAMipd = derive2 { name="packDAMipd"; version="0.2.2"; sha256="0n32vqpl6ym9wjwk8apsgkh7i4jin253l1v0gphvy2v1azcpyrc9"; depends=[broom car data_table dplyr effects flexsurv ggplot2 gvlma hash haven IPDFileCheck lme4 lmtest MASS nlme readxl relaimpo reshape2 rlang stringr survival survminer SurvRegCensCov systemfit tibble tidyr tidyverse tm valueEQ5D]; }; packHV = derive2 { name="packHV"; version="2.2"; sha256="0bj7zhlz2283y1hfdqdn7xil4wscwri1f5hszarwjwczx4n5sv81"; depends=[survival WriteXLS]; }; packMBPLSDA = derive2 { name="packMBPLSDA"; version="0.8.0"; sha256="0jn47zhcfssa2rwjh8jc2zc93g766pslxx8vjm0bsnzyzjl2yqb9"; depends=[ade4 DiscriMiner doParallel FactoMineR foreach MASS pROC]; }; - packS4 = derive2 { name="packS4"; version="0.9.3"; sha256="0kkh4lfdbr2ydyfpymwrdkms1d4mj8430p6vxvj5wrgl4vh85gwd"; depends=[codetools]; }; packageDiff = derive2 { name="packageDiff"; version="0.1"; sha256="0qxgx2ac0x7p9j9clj7hgjahf7xwzcjkcw0d2n6w0r9c4g0mw9w2"; depends=[diffr htmlwidgets]; }; packageRank = derive2 { name="packageRank"; version="0.6.0"; sha256="09yaz2zqsyhnd2iinliayh4djwg2517sh0w6cbdnblkm7wlxg5nw"; depends=[cranlogs data_table ggplot2 memoise pkgsearch R_utils RCurl rversions sugrrants]; }; packagefinder = derive2 { name="packagefinder"; version="0.3.2"; sha256="1jskq7w26bjpam1hvyjcmmw08wz2qfzbyhxi5cdkfiiwqy15xkc1"; depends=[clipr crayon formattable htmlTable httr jsonlite lubridate pander reactable rstudioapi shiny shinybusy shinyjs stringr textutils tidyr]; }; @@ -13860,38 +13542,37 @@ in with self; { pacman = derive2 { name="pacman"; version="0.5.1"; sha256="0z7gngd6h83cpjhq1vg75wvzhdjbgjh7gj5d4zvvi9gd2lmagjcy"; depends=[remotes]; }; paco = derive2 { name="paco"; version="0.4.2"; sha256="0p02fdc5f7d7sbdvxill8jln76p1ndiw95k6s9j41slfriq647vd"; depends=[ape plyr vegan]; }; pacotest = derive2 { name="pacotest"; version="0.4.1"; sha256="1ry0lwzphgivmlc8swhk6l26q4ca6x36rm8r7vvjb64y0fvayqk5"; depends=[ggplot2 gridExtra numDeriv Rcpp RcppArmadillo VineCopula]; }; - pacs = derive2 { name="pacs"; version="0.4.4"; sha256="0kw8pdlxrq9z356pdgamyzkh61dg6hva4gjg2c26xan2y56bwbm4"; depends=[curl jsonlite memoise stringi xml2]; }; + pacs = derive2 { name="pacs"; version="0.4.5"; sha256="0pwd5hk84y3zd2a5f62dr18kxq3lmdk8ffkmwk41qaz213qy5gsh"; depends=[curl jsonlite memoise stringi xml2]; }; pacviz = derive2 { name="pacviz"; version="1.0.1"; sha256="0afh10zf32lk6gh42y6mjfgdw2blhjavhbq2n3s8h62w9blfad5g"; depends=[circlize e1071 plotrix]; }; padr = derive2 { name="padr"; version="0.6.0"; sha256="1l8i40vqpy033j8nc8fqp9ymn378bhyy4hkj8xhk94npv7jibqkk"; depends=[dplyr lubridate Rcpp rlang]; }; paf = derive2 { name="paf"; version="1.0"; sha256="0wrqn67jfrjjxwcrkka6dljgi3mdk00vfjkzzcv2v7c97gx1zvwn"; depends=[survival]; }; pafdR = derive2 { name="pafdR"; version="1.0"; sha256="1yimsd4h23hcf752p5flda3dqk8hgn6qm9k0pmbapxj4jbsw14w5"; depends=[curl exams stringr]; }; pafr = derive2 { name="pafr"; version="0.0.2"; sha256="0ali4m1pv73y88x1dk5rvmg1ysy48janjnc1hnqfcndszfz2b0wm"; depends=[dplyr ggplot2 rlang stringr tibble]; }; - pagedown = derive2 { name="pagedown"; version="0.17"; sha256="100av273xnky7zb0mxxwswv2n711qbc692sz7708pl52xvx29cqs"; depends=[bookdown htmltools httpuv jsonlite later processx rmarkdown servr websocket xfun]; }; + pagedown = derive2 { name="pagedown"; version="0.18"; sha256="1lsyqldccc9d8jfiwqwr9ncncw4ljhyq21nsp9fn6daf5bgddkrz"; depends=[bookdown htmltools httpuv jsonlite later processx rmarkdown servr websocket xfun]; }; pagemap = derive2 { name="pagemap"; version="0.1.3"; sha256="1rwspbk7xmp27iadrd1471a7z71qyzlb0vnkw4ssjk7wi8q48fnj"; depends=[htmlwidgets]; }; pagenum = derive2 { name="pagenum"; version="1.2"; sha256="0nid26wmrm76ifxqpqqry232q4alf80i7df1rg237qil8asx06k1"; depends=[]; }; pageviews = derive2 { name="pageviews"; version="0.5.0"; sha256="1fhlm2y288wx625y0glxybjb0xv9sqvvln35jqlwqq38h3grcpqd"; depends=[curl httr jsonlite]; }; - pagoda2 = derive2 { name="pagoda2"; version="1.0.9"; sha256="0dzq40wc9yyfmycb8cghvfmvd6y5qg7q5p3m3g8r1bcjc8qfbl2f"; depends=[dendsort drat fastcluster igraph irlba magrittr MASS Matrix mgcv N2R plyr R_utils R6 Rcpp RcppArmadillo RcppEigen RcppProgress rjson rlang RMTstat Rook Rtsne sccore urltools]; }; + pagoda2 = derive2 { name="pagoda2"; version="1.0.10"; sha256="18ip8j5l5c3hqw1xsf5wnyas55i2mhk09phy68kjkjdgcymmpg7c"; depends=[dendsort drat fastcluster igraph irlba magrittr MASS Matrix mgcv N2R plyr R_utils R6 Rcpp RcppArmadillo RcppEigen RcppProgress rjson rlang RMTstat Rook Rtsne sccore urltools]; }; pagoo = derive2 { name="pagoo"; version="0.3.12"; sha256="16d935lwsx2b9g57k8sh48pc6ldgga0q6z2pgm6p4ia07l0p4rd4"; depends=[BiocGenerics Biostrings dendextend DT GenomicRanges ggfortify ggplot2 heatmaply magrittr plotly R6 reshape2 S4Vectors shiny shinydashboard shinyWidgets vegan]; }; painbow = derive2 { name="painbow"; version="1.0.1"; sha256="10c8spknh7sqa4vl0q4bjdwd03nl4qk28hj2qa9sbyb1ryc7p4j9"; depends=[ggplot2]; }; painter = derive2 { name="painter"; version="0.1.0"; sha256="0qr6p13h50rlavcsamxmijfr4dfrbv1k088m28qf8a4gam3ap85b"; depends=[]; }; paintmap = derive2 { name="paintmap"; version="1.0"; sha256="1qw5725yjymxmfhffqjx4lbmzj437c7qwr8xrzmf52f0m28nl3vk"; depends=[]; }; - pairedCI = derive2 { name="pairedCI"; version="0.5-4"; sha256="03wf526n3bbr2ai44zwrdhbfx99pxq1nbng9wsbndrdg2ji4dar2"; depends=[]; }; pairsD3 = derive2 { name="pairsD3"; version="0.1.0"; sha256="0ql6pqijf24pfyid52hmf5fmh4w1ca3sm47z9vknqpnjbn47v8q2"; depends=[htmlwidgets shiny]; }; pairwise = derive2 { name="pairwise"; version="0.5.0-2"; sha256="1h1rqh3c40am73zsg4k8zwb14jipjl2pn2znippsnz3sn6plvm8g"; depends=[]; }; pairwiseCI = derive2 { name="pairwiseCI"; version="0.1-27"; sha256="0yp9nibdrsddjqq6vdlfbpvmfgm209h99b6qqqd6wgfzng327822"; depends=[boot coin MASS MCPAN mcprofile]; }; - pak = derive2 { name="pak"; version="0.2.1"; sha256="0v6lyxaqrvzcy2ia9jp9j6g5gw1314s6bfn99jr1pa4mz9qqzizc"; depends=[]; }; + pak = derive2 { name="pak"; version="0.3.0"; sha256="0kzfj35ki1qmib7l5p7hgqh6wkf8zfk7i460s3gzwzvgv81l94cm"; depends=[]; }; palaeoSig = derive2 { name="palaeoSig"; version="2.0-3"; sha256="1sn2nbiq037l81qvrqbg7gf1312g8vy574hsfng07qk1jpx7vwkk"; depends=[assertr dplyr forcats ggplot2 ggrepel magrittr MASS mgcv purrr rioja rlang TeachingDemos tibble tidyr vegan]; }; palasso = derive2 { name="palasso"; version="0.0.8"; sha256="0cgxfzhp394c8xprc2k0qx9c274bbp0cpazk7xilfrgcgk08156i"; depends=[glmnet Matrix survival]; }; - paleoMAS = derive2 { name="paleoMAS"; version="2.0-1"; sha256="1hhb5wbj4m3ch8wnvd1zkl5bk6wa9nl6jl1dhm4z6yqkh29yn9z6"; depends=[lattice MASS vegan]; }; + pald = derive2 { name="pald"; version="0.0.1"; sha256="1f87bsin0s05wggwyqfz2gaqh3rm8d8b3kh0dvl99v4y2zjy1wd4"; depends=[glue igraph]; }; paleoTS = derive2 { name="paleoTS"; version="0.5.2"; sha256="1hd143xw16n8xhicfr6nfyfm6kyr56gyiq5vqnfzhmndjrvkpkx7"; depends=[doParallel foreach iterators mnormt]; }; paleobioDB = derive2 { name="paleobioDB"; version="0.7.0"; sha256="0hgf0ns4mp2war254ysb9rcm4kij1d3xrwkr4s4n2h5in8dz23iq"; depends=[gtools maps plyr raster RCurl rjson scales]; }; paleobuddy = derive2 { name="paleobuddy"; version="1.0.0"; sha256="0kaq6vvzw5h0fpvggmvf6v2zg6a06kxcyajv1krzx0p9482nwyzi"; depends=[]; }; paleofire = derive2 { name="paleofire"; version="1.2.4"; sha256="1vgai4my6kl0fldghp6a1qr8xhxiyw137kd80d0zir6q47nlnc2x"; depends=[GCD ggplot2 lattice locfit plyr raster rgdal]; }; paleomorph = derive2 { name="paleomorph"; version="0.1.4"; sha256="05l55miahkmj8ikq8qz20y6kgxvxmdf04kji898i7fp8qyj4vfpa"; depends=[]; }; paleopop = derive2 { name="paleopop"; version="2.1.2"; sha256="1gbn1dqk4ygyqrhjfdlfbxlcrafvag4spd3crf7lws3l3gn3s934"; depends=[poems R6 sf]; }; - paleotree = derive2 { name="paleotree"; version="3.3.25"; sha256="04l7mh198sm1j8b75ydm7sq55l3nnwns29wj8cli4n3m009bjr5a"; depends=[ape jsonlite phangorn phytools png RCurl]; }; + paleotree = derive2 { name="paleotree"; version="3.4.4"; sha256="1r3qqvdsbr02rw8d6s45ija7cg2wvma3pk67p2fnc139bqww62c8"; depends=[ape jsonlite phangorn phytools png RCurl]; }; paletteer = derive2 { name="paletteer"; version="1.4.0"; sha256="1m0h1p0cbmmi0rk157qyrgcz57pw0syadskrnfa4vs7hm1rndp3m"; depends=[prismatic rematch2 rlang rstudioapi]; }; - paletteknife = derive2 { name="paletteknife"; version="0.4.1"; sha256="0w102pwn38w3z81n3468d2vj5k15fw2xq4a9nkw3piy7s8l2fs7p"; depends=[]; }; + paletteknife = derive2 { name="paletteknife"; version="0.4.2"; sha256="1m86xzx4qa3hlcp9pqmzd7n9js4nq2xap3lpsjxjqm0w3xsvb65s"; depends=[]; }; palettesForR = derive2 { name="palettesForR"; version="0.1.2"; sha256="0nkb0dszj3a9ba7w6kfyn8lxacqsjw60i87p3g2gyl098kjwv7qv"; depends=[]; }; palettetown = derive2 { name="palettetown"; version="0.1.1"; sha256="1kjj1sqib1ns7895plp8c7h317pxwbyxi2shjkcgadkcsv2yjsxn"; depends=[]; }; palinsol = derive2 { name="palinsol"; version="0.93"; sha256="0k29sl2j7yf4yc0dhb047rxwg9np9l6pdwv6wyb4j80yc07vc9am"; depends=[gsl]; }; @@ -13908,7 +13589,7 @@ in with self; { pamr = derive2 { name="pamr"; version="1.56.1"; sha256="0ycpgkk23y3zzkb42n2skcyl35ps1n7jmyzfj7pbxr3f6gr2grfh"; depends=[cluster survival]; }; pan = derive2 { name="pan"; version="1.6"; sha256="1dk3jjj826p7xrz10qz04vyc068xnypg7bp0pj4c32z3da0xzh5d"; depends=[]; }; pander = derive2 { name="pander"; version="0.6.5"; sha256="144zkq5w7v6fpzk3x40i0baybbp0y6x2ckh4b9qljryas9mhgp9a"; depends=[digest Rcpp]; }; - pandocfilters = derive2 { name="pandocfilters"; version="0.1-4"; sha256="1nlnvnvq3zwzpf6hnf8akl0w25kr7hrbr98rw5vgncxw35314xdp"; depends=[jsonlite]; }; + pandocfilters = derive2 { name="pandocfilters"; version="0.1-5"; sha256="1s8mll2d5nci0qdi41qk0sc8gb8xishzjzjcib763scq8z5kv766"; depends=[jsonlite]; }; panelView = derive2 { name="panelView"; version="1.1.9"; sha256="1qrlw4n5sw1mdchgn6p2f2zijmmm87nq5ffdgg4m1gyzkd40qfw8"; depends=[ggplot2 gridExtra]; }; panelWranglR = derive2 { name="panelWranglR"; version="1.2.13"; sha256="0zj0m08518zi6xsa7qik61ys1qqa2lqiar4l7acclkw58w5zrmbc"; depends=[caret data_table Hmisc]; }; panelaggregation = derive2 { name="panelaggregation"; version="0.1.1"; sha256="0x8ldqb9216pclfvs4ymdpian43v2ydkyflpf0k6lcn35r04xfr6"; depends=[data_table]; }; @@ -13916,31 +13597,28 @@ in with self; { panelvar = derive2 { name="panelvar"; version="0.5.3"; sha256="1ckllb14k2xrnbwi5z84f6003f61vdbw0wcsa4vsma0yp4iybh0q"; depends=[ggplot2 knitr MASS Matrix matrixcalc progress reshape2 texreg]; }; pangaear = derive2 { name="pangaear"; version="1.1.0"; sha256="1x1dbf7jahzc5s4gs0hn6xpw35xxbgp61aym50k384pavsdm9xgw"; depends=[crul hoardr jsonlite oai png tibble xml2]; }; panstarrs = derive2 { name="panstarrs"; version="0.1.0"; sha256="0a5b9mzqnvcf0xrd814gnf2nd8incclx214x1k0c3x2zpqbf9p02"; depends=[attempt dplyr glue httr jsonlite magrittr purrr RCurl readr rlang stringr]; }; - papayar = derive2 { name="papayar"; version="1.0"; sha256="11vkjhazfwfixsr6dba5jrcsr3r3mqgvj5s070b4gp70d6k1z8s5"; depends=[htmltools neurobase oro_nifti servr]; }; papci = derive2 { name="papci"; version="0.1.0"; sha256="0ma1pfwgmj6qcg23yzhbnqip4qnxhsmfnvrgrr3ln65q5plmvh58"; depends=[binom dplyr DT Hmisc PropCIs ratesci readxl shiny shinythemes tidyverse]; }; papeR = derive2 { name="papeR"; version="1.0-5"; sha256="095qfgv6h3sl5p69gm1v0qh9axap8gq2a9a3v95688fia2ppym4x"; depends=[car gmodels xtable]; }; paperplanes = derive2 { name="paperplanes"; version="0.0.1.9"; sha256="1d9grc95xqxn91lvk8v7w3z90bhl8savkhihwshyjp8ij2xpzfkl"; depends=[]; }; parSim = derive2 { name="parSim"; version="0.1.4"; sha256="0iswcw52skx1hxb9bv9ihhwwyybprsk2615pmijsxp0bkzgsjc88"; depends=[dplyr pbapply snow]; }; parade = derive2 { name="parade"; version="0.1"; sha256="07x02j9jlldz4p0cyhw292041l3pziv56bhbzp4f0qpxhcbn5zn4"; depends=[]; }; - paradox = derive2 { name="paradox"; version="0.8.0"; sha256="1jfzbpqi1rp3r8hnk37dqwggp48ha5bnilmdz7dwzfdaskssycxa"; depends=[backports checkmate data_table mlr3misc R6]; }; + paradox = derive2 { name="paradox"; version="0.9.0"; sha256="0fzq59903fklgj3kblnpzasy13a82s72c1qjsy7d1m0fyj28ahdw"; depends=[backports checkmate data_table mlr3misc R6]; }; parallelDist = derive2 { name="parallelDist"; version="0.2.6"; sha256="01ly4hxwa64a0ya5gla8rvv72s9mcknsfznivjkh937pbjwb7iih"; depends=[Rcpp RcppArmadillo RcppParallel]; }; parallelMCMCcombine = derive2 { name="parallelMCMCcombine"; version="2.0"; sha256="18xw0s9lga2w981cx4daywp6b6gxvgl9mh68r13c5mmhis3b8v14"; depends=[mvtnorm]; }; parallelML = derive2 { name="parallelML"; version="1.2"; sha256="05j0rb81i8342m8drwgmgi1w30q96yf501d83cdq4zhjbchphbl1"; depends=[doParallel foreach]; }; parallelMap = derive2 { name="parallelMap"; version="1.5.1"; sha256="1qg7zpz5sd9jp8wzjqahkhipwj1jn192llwg06q4gv9mlcsac261"; depends=[BBmisc checkmate]; }; - parallelPlot = derive2 { name="parallelPlot"; version="0.1.0"; sha256="1zppgd0dwxfryv6wfl6k7jrny1yqb5q4f8phnnmzz9ydlv7xyv32"; depends=[htmlwidgets]; }; - parallelly = derive2 { name="parallelly"; version="1.31.0"; sha256="0kjwxgxnlpjbxpr1dyzk3nyx9fwa6vwqr22bvsxz56xwxnirzdxx"; depends=[]; }; + parallelPlot = derive2 { name="parallelPlot"; version="0.2.0"; sha256="04yr9fbvf3w0pw899zvk9ljjhsz775aiyhspm0bvaqaxzv8fkgx3"; depends=[htmlwidgets]; }; + parallelly = derive2 { name="parallelly"; version="1.31.1"; sha256="1nhp66psk3m79is5qm4ppxkj7bdy46jr2h2pir22ia9ghhyzris0"; depends=[]; }; param6 = derive2 { name="param6"; version="0.2.4"; sha256="0h4r2l670zvsbq0cakbm7f5yc0ghaf40kby80q3ql8lwgfnay1jd"; depends=[checkmate data_table dictionar6 R6 set6]; }; paramGUI = derive2 { name="paramGUI"; version="2.1.4"; sha256="0k2wkl99ji3w7xmd9k7zzvrr3dbf3237q7lxm527dnrq331pmxmi"; depends=[colorspace fields shiny shinydashboard TIMP]; }; parameters = derive2 { name="parameters"; version="0.17.0"; sha256="0wrhs3rhr62441cghg4nsrlp6r41nf7x5nclzz71v5c0rfn8jh79"; depends=[bayestestR datawizard insight]; }; - paramhetero = derive2 { name="paramhetero"; version="0.2.0"; sha256="16gvs8328bnqvhx47f0xwnmbmlakxmp4ivnjxk2b13z6qjs70ij4"; depends=[ggplot2 ggpubr lme4 survey]; }; - paramlink = derive2 { name="paramlink"; version="1.1-4"; sha256="1dwm7kv1a9d07hpk3l6mih6qbq9ga7idqlyqs0impxnd83lwp093"; depends=[assertthat kinship2 maxLik]; }; + paramhetero = derive2 { name="paramhetero"; version="1.0.0"; sha256="1zkwzmh3igkwfq87v3rmp3axfspl20qn4qmpyqql6ain564yyabw"; depends=[ggplot2 MASS]; }; + paramlink = derive2 { name="paramlink"; version="1.1-5"; sha256="0a21cy8q3zv96zdq5q2hfkb2ga1fham00in7wfyyd9wpck9gp009"; depends=[assertthat kinship2 maxLik]; }; paramlink2 = derive2 { name="paramlink2"; version="1.0.3"; sha256="0ypn0fdrphblw64sdnfmyf9q4zbakqvl4xzr451phvhx52n1gb73"; depends=[pedprobr pedtools]; }; params = derive2 { name="params"; version="0.7.3"; sha256="0zii9nxgl2z46vyqn2l0kdjmib90534ybpizck74mp2wp1vh9ndj"; depends=[glue purrr RcppTOML readr whisker]; }; paramtest = derive2 { name="paramtest"; version="0.1.0"; sha256="0yn1s1qkgby8x0qn7cy1zhxzc0wyi7bm30pkvijhn5h5afjpylsy"; depends=[boot]; }; paran = derive2 { name="paran"; version="1.5.2"; sha256="0d9la83mxfpfgdfrqa40ck5fcp3j2b70d8c8nl9wmdsgvgqrl23s"; depends=[MASS]; }; - parboost = derive2 { name="parboost"; version="0.1.4"; sha256="087b4as0w8bckwqpisq9mllvm523vlxmld3irrms13la23z6rjvf"; depends=[caret doParallel glmnet iterators mboost party plyr]; }; parcats = derive2 { name="parcats"; version="0.0.3"; sha256="07nsdh57s8gryxg061p0479lx2yy4q9zd5l063hwidhnf462brdc"; depends=[dplyr easyalluvial forcats htmlwidgets magrittr purrr stringr tibble tidyr]; }; - parcoords = derive2 { name="parcoords"; version="1.0.0"; sha256="15w0g789a2igagfrgv1978ib4ipxpfkid5jpj4q344mpdvgp6ip2"; depends=[crosstalk htmlwidgets]; }; parfm = derive2 { name="parfm"; version="2.7.6"; sha256="1n548gaf62m56n8rlcz1mhpqxikd33vydjwl4wps441drp1dbvs0"; depends=[msm optimx sn survival]; }; parglm = derive2 { name="parglm"; version="0.1.7"; sha256="11knspjg0s7x8c5dqrkdkr33af39rhyggs0s0dxv726zfmg1ldy3"; depends=[Matrix Rcpp RcppArmadillo]; }; parlitools = derive2 { name="parlitools"; version="0.4.1"; sha256="05xii25acmbdbhrkwgw812352vhxqpp5m8qbl346bp6v74ixi8aj"; depends=[dplyr hansard mnis readr sf snakecase stringi]; }; @@ -13958,6 +13636,7 @@ in with self; { partDSA = derive2 { name="partDSA"; version="0.9.14"; sha256="1kp0cdsdjiay349jz22iqfzvspny8s343cfan8xahgf931k9h8p6"; depends=[survival]; }; partR2 = derive2 { name="partR2"; version="0.9.1"; sha256="06ky0hhrq0mcsn9rwrzvwn0rrjj0l8rxs0hqp10668gdq5hjk8bn"; depends=[dplyr ggplot2 lme4 magrittr pbapply purrr rlang tibble tidyr]; }; partialOR = derive2 { name="partialOR"; version="0.9"; sha256="02vbvln8lswysaafpxq5rxb6crp7yhlc13i42kybv8fr10jaagjj"; depends=[nnet]; }; + partialised = derive2 { name="partialised"; version="0.1.0"; sha256="19rm2fcv5am5512y1p77nss715dcdfrg3hvrgy2b49jr0f9i8d25"; depends=[pillar purrr rlang vctrs]; }; particle_swarm_optimisation = derive2 { name="particle.swarm.optimisation"; version="1.0"; sha256="0y3pq129irxifiph40mf027gbc02c4pwkchs305pcbj3vr9pwsyw"; depends=[R6 rgl]; }; particles = derive2 { name="particles"; version="0.2.2"; sha256="0pncfpk89hsfjch8h5b86rx7hsgdyg9bsxc54f5bf0y8gh9v98qj"; depends=[digest dplyr igraph magrittr mgcv Rcpp rlang tidygraph]; }; partition = derive2 { name="partition"; version="0.1.4"; sha256="19f1j6hm35c57r2x51nh2kns3jyd85xxg06lgd94kb13brr1hk2v"; depends=[crayon dplyr forcats ggplot2 infotheo magrittr MASS pillar purrr Rcpp RcppArmadillo rlang stringr tibble tidyr]; }; @@ -13968,7 +13647,7 @@ in with self; { partitions = derive2 { name="partitions"; version="1.10-4"; sha256="1ik7cj2yfybx4v847nvnjrbkd0k66pfqqv6lkygfnlrldi0r205i"; depends=[gmp mathjaxr polynom sets]; }; partools = derive2 { name="partools"; version="1.1.6"; sha256="0w7p88y4ab4v14k16k95cyb5f3yl2g6ban11775rmi2h9xqkfxk8"; depends=[data_table pdist regtools]; }; partsm = derive2 { name="partsm"; version="1.1-3"; sha256="17md3j41knscllckiqnvkqvf2v0fgsig101vgg6z5ic1yzvzfxgs"; depends=[]; }; - party = derive2 { name="party"; version="1.3-9"; sha256="12ch2q5my2r5l84zdndr3w0y50wa4r8snj2xpxg2hsb3p3yzx899"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; + party = derive2 { name="party"; version="1.3-10"; sha256="0smmyxh62gimga44ljz7skswngiccwfnsr4favg2lrnfyrajk2g5"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; }; partykit = derive2 { name="partykit"; version="1.2-15"; sha256="1b73s5l19yicwginqsg5xr7fzb005x372n0wb34kk6jb5x5lbsdj"; depends=[Formula inum libcoin mvtnorm rpart survival]; }; parviol = derive2 { name="parviol"; version="1.1"; sha256="1sfgic86ssd5wjf9ydss9kjd3m4jmm2d1v896sjsv8bydwymbpx3"; depends=[vioplot]; }; parzer = derive2 { name="parzer"; version="0.4.1"; sha256="0v97cfjkggkdhv8gc0ffgbijgwxzpz7n44z7gsmkvggjj3wsxvpr"; depends=[Rcpp withr]; }; @@ -13989,13 +13668,11 @@ in with self; { pathdiagram = derive2 { name="pathdiagram"; version="0.1.9.1"; sha256="018frv1n3x0bf1682jibnm5k2dlkg85xa9mps28l22a0z8bplbv5"; depends=[shape]; }; pathfindR = derive2 { name="pathfindR"; version="1.6.3"; sha256="104qr67xnrqnm112xyjsakgy01xkxjxhq89vqw5ic9v3ljyn0vvr"; depends=[AnnotationDbi DBI doParallel foreach fpc ggplot2 ggraph ggupset igraph KEGGgraph KEGGREST knitr magick msigdbr org_Hs_eg_db pathfindR_data R_utils rmarkdown]; }; pathfindR_data = derive2 { name="pathfindR.data"; version="1.1.2"; sha256="0p0infg5hxw40bacgni5w1a8xb29wc0xrd8mjsnlfarr8wygd9fl"; depends=[]; }; - pathlibr = derive2 { name="pathlibr"; version="0.1.0"; sha256="0z8iz765fi1s2770p7dwwv2anihfw86kb5dwg081wb6474wiq6v8"; depends=[glue logging magrittr purrr R6 rlang]; }; pathlit = derive2 { name="pathlit"; version="0.1.0"; sha256="0harvldkhq2c1wb9i4n72w1s3frhjzyn4cjpwk1n350zg12kh9gz"; depends=[httr jsonlite testthat timeSeries usethis]; }; pathmapping = derive2 { name="pathmapping"; version="1.0.2"; sha256="0kx4wxf6lhi58sif8fzr5w4wa0i5253fq4v0ynp721fv1hkvmhvz"; depends=[]; }; pathmodelfit = derive2 { name="pathmodelfit"; version="1.0.5"; sha256="1nxcnmz9r99znqmwibvvix7h3acp22cs6wp1jmp21p862ncabll8"; depends=[lavaan]; }; paths = derive2 { name="paths"; version="0.1.1"; sha256="19fl54r2myb9ky8ffnx71xw23a8dlg15sj9v36xcpv79z61ryws9"; depends=[BART boot gbm ggplot2 metR pryr tidyr twang]; }; pathviewr = derive2 { name="pathviewr"; version="1.0.1"; sha256="0xg7ysdfkvsyc8rglw876bb1xlxi30hq1agnmxgg7xw61jsd3x0l"; depends=[cowplot data_table dplyr fANCOVA ggplot2 magrittr purrr R_matlab stringr tibble tidyr tidyselect]; }; - pathwayTMB = derive2 { name="pathwayTMB"; version="0.1.1"; sha256="1y5c779895mvbllykz8j4sgn2n0k37g0wlby404ma9n1hfnbh37v"; depends=[BiocGenerics caret clusterProfiler data_table GenomicFeatures glmnet maftools pROC purrr randomForest RColorBrewer survival survminer]; }; patientProfilesVis = derive2 { name="patientProfilesVis"; version="2.0.2"; sha256="0w85y74n46665w8d4lv9pb88hmarn6ax9qsv0sl1xw1q7iby2pzx"; depends=[clinUtils cowplot ggplot2 gridExtra knitr plyr reshape2 scales stringr]; }; patrick = derive2 { name="patrick"; version="0.1.0"; sha256="0ck9lzg11dpy8x5sn1q92lw52yy0fqr5x7dnnc364cq1v74yk26q"; depends=[dplyr purrr rlang testthat tibble]; }; patternator = derive2 { name="patternator"; version="0.1.0"; sha256="0s4vrhdfblllnhpz2awhhrkwm8d4170xg7fpsp7kvvqy8z8biwvi"; depends=[data_table]; }; @@ -14019,6 +13696,7 @@ in with self; { paws_networking = derive2 { name="paws.networking"; version="0.1.12"; sha256="02hxaa5nlj70mdggh379ij3fn09xm8h5ldzsyf45c342prpl6zwj"; depends=[paws_common]; }; paws_security_identity = derive2 { name="paws.security.identity"; version="0.1.12"; sha256="092lz2ipn5iqr593x7ra8c0bj64yf6315mdc3llgwrjyb4vfxif9"; depends=[paws_common]; }; paws_storage = derive2 { name="paws.storage"; version="0.1.12"; sha256="06m887vpqp5d6k3zxdlga599dsv8v3rladk7xqaxqnld1f17am04"; depends=[paws_common]; }; + pbANOVA = derive2 { name="pbANOVA"; version="0.1.0"; sha256="0m7946jv4zbs0k74klxkl8nbwirc48g6paqrfl5fadkd17xxqq2j"; depends=[DescTools dplyr lmtest MASS plyr Rmisc]; }; pbapply = derive2 { name="pbapply"; version="1.5-0"; sha256="0m8a0ygwl98cs0vcha5gs9f7z8whcplwxhravhs9bfp5hvigxzgg"; depends=[]; }; pbatR = derive2 { name="pbatR"; version="2.2-13"; sha256="01ra1ggdpxdl1xqjdh86qynr5gkgzw01ww6j9bwgx4mj20i6j1ha"; depends=[rootSolve survival]; }; pbbd = derive2 { name="pbbd"; version="1.0.0"; sha256="07g029qw5949500c879iv86zwg2fldqrz8wzfz335jmcinqimgj6"; depends=[ibd]; }; @@ -14029,7 +13707,7 @@ in with self; { pbixr = derive2 { name="pbixr"; version="0.1.4"; sha256="098fwmar56l8w5r58grirqypdmc2c4hil7bi11z18llja62fncnw"; depends=[dplyr formatR jsonlite stringr textclean xml2 zip]; }; pbkrtest = derive2 { name="pbkrtest"; version="0.5.1"; sha256="1if7msv9i7jhg1as1f7m81a95dnwhwj3yfs24bqr0f6r0ch4b8xj"; depends=[broom dplyr knitr lme4 magrittr MASS Matrix numDeriv]; }; pbm = derive2 { name="pbm"; version="1.2.1"; sha256="0nkqhrvlzf2imkq5pbni3c1k4vc75y26rra3czbchs111v7jrcqv"; depends=[]; }; - pbmcapply = derive2 { name="pbmcapply"; version="1.5.0"; sha256="0i58gcqpnbyvc448qfgm45b7rpbmrnagsvk1h1hsqchbbicfslnz"; depends=[]; }; + pbmcapply = derive2 { name="pbmcapply"; version="1.5.1"; sha256="1p8jf7c4k45482w72sr0jw4jkz787krrxai3sl6jz5l4lda2iz3z"; depends=[]; }; pbo = derive2 { name="pbo"; version="1.3.4"; sha256="0v522z36q48k4mx5gym564kgvhmf08fsadp8qs6amzbgkdx40yc4"; depends=[lattice]; }; pbs = derive2 { name="pbs"; version="1.1"; sha256="0cpgs6k5h8y2cia01zs1p4ri8r7ljg2z4x8xcbx73s680dvnxa2w"; depends=[]; }; pbv = derive2 { name="pbv"; version="0.4-22"; sha256="0658k8ql78y756l15wx0i6gpicgkbczwc6g7dg15i81xy1hg49qb"; depends=[Rcpp RcppArmadillo]; }; @@ -14040,7 +13718,7 @@ in with self; { pca3d = derive2 { name="pca3d"; version="0.10.2"; sha256="0xpln78zdh6q7xff6pj2jaq2kafrijmlikmpnsfar2fzgkaw7jx6"; depends=[ellipse rgl]; }; pcaBootPlot = derive2 { name="pcaBootPlot"; version="0.2.0"; sha256="1320d969znk9xvm1ylhc3a31nynhzyjpbg1fsryq72nhf8jxijaa"; depends=[FactoMineR RColorBrewer]; }; pcaL1 = derive2 { name="pcaL1"; version="1.5.6"; sha256="1wpd9xiyrw59l7f5g7br4f8rrlzwsiwvla70dmdvcify9dwlg1rz"; depends=[]; }; - pcaPP = derive2 { name="pcaPP"; version="1.9-74"; sha256="1dlrz5plb8b89vr3j6sn9jwryyhcwflqkiilxkybbr379m1pp0sh"; depends=[mvtnorm]; }; + pcaPP = derive2 { name="pcaPP"; version="2.0-1"; sha256="06hjhr0dzdp5yhd421q9scbv6w6bchicbn2bl7am490ncgrf544n"; depends=[mvtnorm]; }; pcadapt = derive2 { name="pcadapt"; version="4.3.3"; sha256="01wvcflfsnlsq23vq03n870fxsab3ab29k26nqlqxw82lbvx99s3"; depends=[bigutilsr data_table ggplot2 magrittr mmapcharr Rcpp rmio RSpectra]; }; pcal = derive2 { name="pcal"; version="1.0.0"; sha256="07119k5f4h9jc48bicl4q5i7bdrkha3rz22r6g44c8ilnkvjhw6j"; depends=[Rdpack]; }; pcalg = derive2 { name="pcalg"; version="2.7-6"; sha256="0c84dl15dy2v19m7603walsd9zmnalwz56729jd23kfw6yh0mglk"; depends=[abind bdsmatrix BH clue corpcor fastICA ggm graph igraph RBGL Rcpp RcppArmadillo robustbase sfsmisc vcd]; }; @@ -14055,10 +13733,10 @@ in with self; { pcgen = derive2 { name="pcgen"; version="0.2.0"; sha256="1v2fmxbj9gz5sg0hizw03ad8cfm9v25708h7fvnf6gb42b2mmyb3"; depends=[ggm graph Hmisc lme4 MASS Matrix pcalg sommer]; }; pch = derive2 { name="pch"; version="2.0"; sha256="1nnawsc6mscwd4z62hhilpn04a9iapx551vvjm3alwk2makhj0wf"; depends=[Hmisc survival]; }; pchc = derive2 { name="pchc"; version="0.7"; sha256="0m5s5mdrgnppy54zalc6c7hjvwfd47jr3yls1jvm7455chz18nr9"; depends=[bigstatsr bnlearn Rfast Rfast2 robustbase]; }; - pcmabc = derive2 { name="pcmabc"; version="1.1.1"; sha256="1bacxxgcrgsa7h1baybwwinw3n95cx5wkkfm5cb4iscgk910mfmb"; depends=[ape distory geiger mvSLOUCH phangorn TreeSim yuima]; }; + pcmabc = derive2 { name="pcmabc"; version="1.1.3"; sha256="1wrdbinc3y71q4ix8cb1vn4nhaa0bp9yxw1n8d5bzdyhg29df2hj"; depends=[ape mvSLOUCH phangorn yuima]; }; pcnetmeta = derive2 { name="pcnetmeta"; version="2.7"; sha256="0jibi4wylxkisgj740xbibjqs60d5xg9my4sx7vshgfl941y9wcv"; depends=[coda rjags]; }; pco = derive2 { name="pco"; version="1.0.1"; sha256="0k1m450wfmlym976g7p9g8arqrvnsxgdpcazk5kh3m3jsrvrcchf"; depends=[]; }; - pcoxtime = derive2 { name="pcoxtime"; version="1.0.3"; sha256="04xng5ixmp5jm2m2v3661qvfjnp44xx999hvgv05140qx3i2nmqj"; depends=[doParallel foreach ggplot2 pec PermAlgo prodlim Rcpp RcppArmadillo riskRegression survival]; }; + pcoxtime = derive2 { name="pcoxtime"; version="1.0.4"; sha256="1ill4vkkxv9iymknfkk72sff932l3jb0m70aga1skxkriyr02nwf"; depends=[doParallel foreach ggplot2 pec PermAlgo prodlim Rcpp RcppArmadillo riskRegression survival]; }; pcr = derive2 { name="pcr"; version="1.2.2"; sha256="1lmgm8k3s7780ivrdj0zk1ninx7b5jffir6q5p2p47h62qqjmp5d"; depends=[ggplot2]; }; pcse = derive2 { name="pcse"; version="1.9.1.1"; sha256="1rb9146vjkf36vc5v3frykmsff7kp6qp1hhmj8pak583in4rz8f8"; depends=[]; }; pcsstools = derive2 { name="pcsstools"; version="0.1.1"; sha256="1vp4lflxzzgjfh1nkkfvnb74pjmbcdgrc1hlakjd8i5rw7swvr20"; depends=[gtools Rdpack]; }; @@ -14074,23 +13752,21 @@ in with self; { pdfminer = derive2 { name="pdfminer"; version="1.0"; sha256="0hm9nalazqcg4n1sqcjan8wm1rvv4lnflmlkrqkj5yhhmza7xkfh"; depends=[checkmate jsonlite]; }; pdfsearch = derive2 { name="pdfsearch"; version="0.3.0"; sha256="0mk1s8b7cdz025xn9kg5xnw388sndhjm80ckf71daxviknrzcscf"; depends=[pdftools stringi tibble tokenizers]; }; pdftables = derive2 { name="pdftables"; version="0.1"; sha256="1gnwjijr89cczchc7yi4w5xiw0dalbymvj23rymm8cfra34iwn5p"; depends=[httr]; }; - pdftools = derive2 { name="pdftools"; version="3.1.1"; sha256="1lflqf2ypdm4w033vyjykmsy8cl34sp42fzkfgfdhvl2d0xjhl96"; depends=[qpdf Rcpp]; }; + pdftools = derive2 { name="pdftools"; version="3.2.0"; sha256="0b4q2kkrgn55pzk005s48g5x7v74ijyyqzispmfxkz8cfcyh1bm2"; depends=[qpdf Rcpp]; }; pdi = derive2 { name="pdi"; version="0.4.2"; sha256="04lz16al9c3ycdswfpf1fanghglpzbl8pfggr9bjmcn7k2v91ysv"; depends=[dplyr magrittr purrr randomForest readxl stringr tibble tidyr tidyselect]; }; - pdist = derive2 { name="pdist"; version="1.2"; sha256="18nd3mgad11f2zmwcp0w3sxlch4a9y6wp8dfdyzvjn7y4b4bq0dd"; depends=[]; }; + pdist = derive2 { name="pdist"; version="1.2.1"; sha256="0bvg8si81hs79v39d7svv4zbv2p0sk2r6m9vamibvkh9qvl4x406"; depends=[]; }; pdmod = derive2 { name="pdmod"; version="1.0.1"; sha256="04bk9gjg2c55hk6k1hy0m29927s8a5ig6mr4xb89npam68g0pcms"; depends=[mco]; }; - pdp = derive2 { name="pdp"; version="0.7.0"; sha256="0wcszaq4c14f9a2r1gd32mzhs035jlg2w8mkfklzigcj7fv9xmi8"; depends=[ggplot2 gridExtra lattice magrittr mgcv plyr viridis]; }; + pdp = derive2 { name="pdp"; version="0.8.0"; sha256="1ilj6ds3ihhdq1ss6xz38srramq3bp42y855zdy13895pxwz6jac"; depends=[foreach ggplot2 lattice rlang]; }; pdqr = derive2 { name="pdqr"; version="0.3.0"; sha256="0agkxl23h57smq292l5b0wdi2ixxg6l0fi74sans5hljmyg2zqns"; depends=[]; }; - pds3 = derive2 { name="pds3"; version="0.5.0"; sha256="1hipi4ygk30khrrslxq3m9qdichazhrl34k444shs7gi6wjx9ilr"; depends=[rly]; }; pdxTrees = derive2 { name="pdxTrees"; version="0.4.0"; sha256="0cw1zrkawc2wnbd2pif8732kl92qvklxvx6hnikx3siz22psvbl8"; depends=[dplyr magrittr rlang]; }; pdynmc = derive2 { name="pdynmc"; version="0.9.7"; sha256="17gra5w2s2qb73bb509n4xlhwcvk7jwv9hw38ww41qv1g0v436lz"; depends=[data_table MASS Matrix optimx qlcMatrix Rdpack]; }; peRiodiCS = derive2 { name="peRiodiCS"; version="0.5.0"; sha256="1366gmn6qfciwcjsfnbl3hfa16ffn11g00fm0kv74ilvm3nnawk3"; depends=[Hmisc rms]; }; peRspective = derive2 { name="peRspective"; version="0.1.1"; sha256="1dca7592h9yp8lfj866hjzg0d48c84v2kd9l5bsvkw935wwxwg2w"; depends=[crayon dplyr glue httr jsonlite magrittr purrr rlang rlist stringr tibble]; }; peacesciencer = derive2 { name="peacesciencer"; version="1.0.0"; sha256="00b1a1qg17klg5pcf86yb8j5g2chcrhbs0lvkqnjv7h0ycx9kwbl"; depends=[dplyr geosphere lifecycle magrittr rlang stevemisc stringr tidyr]; }; peacots = derive2 { name="peacots"; version="1.3"; sha256="128qpz06b0giz80lp9yq9l6pxcjglfr97yickg7z64vzzl2jilmq"; depends=[]; }; - peakPick = derive2 { name="peakPick"; version="0.11"; sha256="1zf7ff9arm4hkdxrfhb0p8p7npd51icy773g2raaqsfys825xwhm"; depends=[matrixStats]; }; peakRAM = derive2 { name="peakRAM"; version="1.0.2"; sha256="0mj7f8jqkfky61xag2km0svbgvfmif3c1d8ccav6pv1963cg3cvv"; depends=[]; }; pearson7 = derive2 { name="pearson7"; version="1.0-3"; sha256="0vdhhds1lngaff7dkx4b1az3syqw8b22w2jskcrw0m49wp1dbbha"; depends=[]; }; - pec = derive2 { name="pec"; version="2022.03.06"; sha256="1v43k2l46dz1myas9afyd5cp9a9rw7l71i7k4z8pwlw6aydispnm"; depends=[foreach lava prodlim riskRegression rms survival timereg]; }; + pec = derive2 { name="pec"; version="2022.05.04"; sha256="0s0lfr8747gfnn9hrwacbh160mn593p28qvima5dz9aabndhg8a7"; depends=[foreach lava prodlim riskRegression rms survival timereg]; }; pecora = derive2 { name="pecora"; version="0.1.1"; sha256="0l66brd5d24hn279ck785jy4qnxiv9lc3d1czh4f3l25d0hj99xi"; depends=[matrixStats Rcpp RcppArmadillo]; }; pedSimulate = derive2 { name="pedSimulate"; version="1.3.2"; sha256="0v1swbilc2pmcf86z1g42yjr4lmb9zwda2kv4pap27prk4n224b9"; depends=[]; }; pedalfast_data = derive2 { name="pedalfast.data"; version="1.0.0"; sha256="02s6igrybcfs8nyxr50iiwclhrwnq3x2x5w886imrlp2wbkf13m4"; depends=[]; }; @@ -14099,25 +13775,25 @@ in with self; { pedigree = derive2 { name="pedigree"; version="1.4"; sha256="1dqfvzcl6f15n4d4anjkd0h8vwsbxjg1lmlj33px8rpp3y8xzdgw"; depends=[HaploSim Matrix reshape]; }; pedigreeTools = derive2 { name="pedigreeTools"; version="0.1"; sha256="0kgbjyw9dlp4s91cyg5w0p2vn2h9pg9ixrhc5pwvkp3v1acd0xfm"; depends=[Matrix]; }; pedigreemm = derive2 { name="pedigreemm"; version="0.3-3"; sha256="1bpkba9nxbaxnivrjarf1p2p9dcz6smf9k2djawis1wq9dhylvsb"; depends=[lme4 Matrix]; }; - pedmod = derive2 { name="pedmod"; version="0.1.0"; sha256="1gkln7z1dbyhl44r2mp5s4sk8az0yyzpwqq8sa9z6pa3zhw55gf7"; depends=[BH Rcpp RcppArmadillo testthat]; }; + pedmod = derive2 { name="pedmod"; version="0.2.0"; sha256="15ylxbwa9s6pbmiy1pc98vg514pjmpb72dpj6z1bpflzxjgv3phg"; depends=[BH psqn Rcpp RcppArmadillo testthat]; }; pedmut = derive2 { name="pedmut"; version="0.3.0"; sha256="0w42jhgrkf5f1baz2jb94fyccm0wx94vg0g1px4p39jvpknz9d6a"; depends=[]; }; pedprobr = derive2 { name="pedprobr"; version="0.6.1"; sha256="0rz5i03d75nlli8m186b4a1yy3yx54cvm8hvp603ziglp2b5mf2y"; depends=[pedmut pedtools]; }; - pedquant = derive2 { name="pedquant"; version="0.1.8"; sha256="0rzpnsf6d509f4wkkdcrsw7rfdlvg12mr25ha3dy6a47nqscxlhp"; depends=[curl data_table ggplot2 gridExtra httr jsonlite PerformanceAnalytics plotly readr readxl rvest scales stringi TTR webdriver xml2 zoo]; }; + pedquant = derive2 { name="pedquant"; version="0.1.9"; sha256="1dc2jyqfhw925cda3bqr6gpdd273bxnmzcgpvxw864bg022vxsb9"; depends=[curl data_table echarts4r httr jsonlite lubridate PerformanceAnalytics readr readxl rvest stringi TTR webdriver xml2 zoo]; }; pedsuite = derive2 { name="pedsuite"; version="1.1.0"; sha256="19vbfn8dy7a4hrrv8zsja721lchng55gvc26xlkzx5dl96d2xp9w"; depends=[dvir forrel ibdsim2 paramlink2 pedbuildr pedmut pedprobr pedtools ribd segregatr verbalisr]; }; pedtools = derive2 { name="pedtools"; version="1.2.0"; sha256="0yyia6s3dzyrwm9gpmcnfgz6js9hr9x7fvxzqcxgzh6i0kp8p2ng"; depends=[kinship2]; }; peermodels = derive2 { name="peermodels"; version="0.10.3"; sha256="116xn5w7rwm9q0m7bj4z29l4hspj2nqdcxzir9dqpdqmf7z58v67"; depends=[curl httr httr2 jsonlite stringr]; }; pegas = derive2 { name="pegas"; version="1.1"; sha256="0ngd0laqbs139ji9hm9kwsm9rm56agw2yyfcplxgqva936l93fl7"; depends=[ape]; }; - pema = derive2 { name="pema"; version="0.1.0"; sha256="0z56r7jjigyw3lxf2bvzhfb3a7bs79pj4w7r9qg231z30sf4m1fz"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools sn StanHeaders]; }; + pema = derive2 { name="pema"; version="0.1.1"; sha256="0njig2mn98fav2ma606r71xpzqbahrhxa6vxlkk14f8cf8gh6idk"; depends=[BH ggplot2 Rcpp RcppEigen RcppParallel rstan rstantools shiny sn StanHeaders]; }; pems_utils = derive2 { name="pems.utils"; version="0.2.29.1"; sha256="0nmawl1l2wf77r02qpazqwm5708fk98k7l07wyybviwb1j3x1pqj"; depends=[baseline dplyr ggplot2 lattice latticeExtra loa RColorBrewer Rcpp rlang]; }; penAFT = derive2 { name="penAFT"; version="0.2.0"; sha256="1sqxw3kny7ys9b0zldnfdblg50zccp6kscqy0sx0h7g577zdyk09"; depends=[ggplot2 irlba Matrix Rcpp RcppArmadillo]; }; penDvine = derive2 { name="penDvine"; version="0.2.4"; sha256="0znpvsr7zy2wgy7znha1qiajcrz1z6mypi3f5hpims33z7npa7dl"; depends=[doParallel fda foreach lattice latticeExtra Matrix quadprog TSP]; }; penMSM = derive2 { name="penMSM"; version="0.99"; sha256="1xdcxnagvjdpgnfa5914gb41v5y4lsvh63lbz1d2l8bl9mpff3lm"; depends=[Rcpp]; }; penPHcure = derive2 { name="penPHcure"; version="1.0.2"; sha256="1c90d6f78npvzsvcy9vh8s6izfgbcxzly37lpwhqgdl5daww03l1"; depends=[MASS Rcpp RcppArmadillo Rdpack survival]; }; - penalized = derive2 { name="penalized"; version="0.9-51"; sha256="1zcrwa93mc27qj3g4ayc2k895r6g8q0g6qb2azmvj7wqk750va7a"; depends=[Rcpp RcppArmadillo survival]; }; + penalized = derive2 { name="penalized"; version="0.9-52"; sha256="08badmgygppbqzay20qijyww028yw6s8dyd8ijcp8g4r9rn8xqyq"; depends=[Rcpp RcppArmadillo survival]; }; penalizedLDA = derive2 { name="penalizedLDA"; version="1.1"; sha256="1bw5wiixmmg1vr3v0d59vh67f0gy2rvr30bi58skvrkb25qcjq6l"; depends=[flsa]; }; - penalizedSVM = derive2 { name="penalizedSVM"; version="1.1.2"; sha256="03zw95bc6svbnzak9x72s3b8l9gh581mxn2di1fl89gxlh864amd"; depends=[corpcor e1071 lhs MASS mlegp statmod tgp]; }; + penalizedSVM = derive2 { name="penalizedSVM"; version="1.1.3"; sha256="1mvp9qzk9gw8z13rsjkxgb98s6jqd8anzggfw71pziif0fd6zv10"; depends=[corpcor e1071 MASS mlegp statmod tgp]; }; penaltyLearning = derive2 { name="penaltyLearning"; version="2020.5.13"; sha256="0297rp5zn6d0axl44i3baq2vqvhrx6s8irrysvqdcx1rkishf4j0"; depends=[data_table ggplot2]; }; - pencal = derive2 { name="pencal"; version="1.1.0"; sha256="0v9b341cmvjrj424a94sy4ghvpdkjj7pbyv7ipj10wr425chhw4w"; depends=[doParallel dplyr foreach glmnet lcmm magic MASS Matrix nlme survcomp survival survivalROC]; }; + pencal = derive2 { name="pencal"; version="1.1.1"; sha256="1r8mhb4b23hbycs5ra7wcfx6bwk06285kmd56pmbawx3j7yy2zya"; depends=[doParallel dplyr foreach glmnet lcmm magic MASS Matrix nlme survcomp survival survivalROC]; }; pencopulaCond = derive2 { name="pencopulaCond"; version="0.2"; sha256="18hjjxnd0l2ms20ddqkghfbd4as5kq2rgwqzpz4y38k6nw76x511"; depends=[doParallel fda foreach igraph lattice latticeExtra pacotest quadprog TSP]; }; pendensity = derive2 { name="pendensity"; version="0.2.13"; sha256="1wcsib7m2161nqqrmgdvrj7lr8zq6njc9xr935hwfh3qbbgkmfjb"; depends=[fda lattice]; }; penfa = derive2 { name="penfa"; version="0.1.1"; sha256="1r8lq4kvlwlk7q0mdzkrdm9sx7lqq4l27jfxa1zcfh50sk1qlam2"; depends=[GJRM MASS mgcv trust]; }; @@ -14125,6 +13801,7 @@ in with self; { pense = derive2 { name="pense"; version="2.1.0"; sha256="1gz9p3khmv6v4m9aw314zdxdr33qmddb4s2pads0lm5iylngjd4j"; depends=[lifecycle Matrix Rcpp RcppArmadillo rlang]; }; pensim = derive2 { name="pensim"; version="1.3.3"; sha256="1raap4zlqgcqh8x83kp1ss5qcn0p7bwribp4dhfhrh9rl92hh92a"; depends=[MASS penalized]; }; peopleanalyticsdata = derive2 { name="peopleanalyticsdata"; version="0.2.1"; sha256="0ig65y4sl6wagzcvj8wwjw2dblb61hgbsqvp76wvxbhga1q0wnpf"; depends=[]; }; + pepe = derive2 { name="pepe"; version="1.2.0"; sha256="1ihms63crxq0k7hd2yjyxmfw0yfy668srw012vi8mf8p31jdcr3j"; depends=[dplyr ggplot2 psych tidyr]; }; peperr = derive2 { name="peperr"; version="1.4"; sha256="0fcznmpm4f1jvl4yl7aqb637l387g74xk86vj3lwp65jzq6g8i0a"; depends=[snowfall survival]; }; peppm = derive2 { name="peppm"; version="0.0.1"; sha256="1lvk1rjsx39mb93s9pclriw4fmf1sx05s59qqx5m3aqb4q8ffxkg"; depends=[Rcpp]; }; pepr = derive2 { name="pepr"; version="0.4.0"; sha256="0mnigx4lpl397k526sxp7ckrnp59hfrnm9gqcq0nx6j5d7379sp9"; depends=[data_table pryr stringr yaml]; }; @@ -14154,7 +13831,6 @@ in with self; { personalized = derive2 { name="personalized"; version="0.2.6"; sha256="1pakg7c8h3cijm3n8x433isbmwa78gmg42xpkdvpabv2fx7jlday"; depends=[foreach gbm ggplot2 glmnet kernlab mgcv plotly survival]; }; personalized2part = derive2 { name="personalized2part"; version="0.0.1"; sha256="104flqjyf0x0619msyc0vlkg61znvhf0v86fsdpksdxkgwb7wv7j"; depends=[foreach HDtweedie personalized Rcpp RcppEigen]; }; personalr = derive2 { name="personalr"; version="1.0.1"; sha256="119askhfcb7jb5zvckk4vq51jsnzrqxrang7i2lgvszqwd9s35f1"; depends=[desc devtools fs glue magrittr purrr rprojroot rstudioapi usethis withr xfun]; }; - personograph = derive2 { name="personograph"; version="0.1.3"; sha256="07lrlbw4222l1d5rwn0hfqliyk8sqjf6ipz4n2zwcbk113bb8sy7"; depends=[grImport]; }; personr = derive2 { name="personr"; version="1.0.0"; sha256="12iyzdc2kksy74npzdgy19lnhm9l9c7f4lkwshmsp6by09kb2dm3"; depends=[ggplot2 rlang rmarkdown shiny whisker]; }; perspectev = derive2 { name="perspectev"; version="1.1"; sha256="175s1nq5z4gfs5qb39lq230g6n0v8fxzs5hr9j2rgx0knpbjfq03"; depends=[ape boot doParallel foreach ggplot2 mapproj sp]; }; perturbR = derive2 { name="perturbR"; version="0.1.3"; sha256="1sdk5ls8x66lds4cy40xbl383px4xmrh21cw4bgy83rzbjjzwp2h"; depends=[ggplot2 igraph]; }; @@ -14195,17 +13871,17 @@ in with self; { pheatmap = derive2 { name="pheatmap"; version="1.0.12"; sha256="1hdh74az3vyzz6dqa311rhxdm74n46lyr03p862kn80p0kp9d7ap"; depends=[gtable RColorBrewer scales]; }; phecodemap = derive2 { name="phecodemap"; version="0.1.0"; sha256="12dhyzazdsf938zp7i4ckbh2h5fvxg209mb4mq319akp34746h50"; depends=[collapsibleTree config dplyr DT golem plotly purrr readr rintrojs shiny shinyBS shinycssloaders shinydashboard shinydashboardPlus]; }; phenModel = derive2 { name="phenModel"; version="1.0"; sha256="07jsc8jiwgxvhv4m6nr7llm22zzh5hd3pakw5c93jzim2835zvkp"; depends=[dplyr ggplot2 reshape]; }; - phenability = derive2 { name="phenability"; version="2.0"; sha256="0can8qgdpfr4h6jfg23cnwh7hhmwv6538wg2jla9w138la7rhpd1"; depends=[calibrate]; }; phenesse = derive2 { name="phenesse"; version="0.1.2"; sha256="1f5m8pq1n6x9ic4b0cb7j3dwfn1xfkbbpn0zr32frkiai3jmzv3j"; depends=[boot fitdistrplus]; }; phenex = derive2 { name="phenex"; version="1.4-5"; sha256="00lsymflbmlxzxz8rxcpc94pc9zmhybial9f2xkz98h6h45zgrjl"; depends=[DEoptim foreach]; }; - phenmod = derive2 { name="phenmod"; version="1.2-3"; sha256="0dxwx8c7zka29fq7svrvn8bghj8jh8grbrgsw4pvavx2439cldak"; depends=[gstat lattice pheno RColorBrewer]; }; - pheno = derive2 { name="pheno"; version="1.6"; sha256="0xdya1g1ap7h12c6zn3apbkxr725rjhcp4gbdchkvcnwz4y9vw8c"; depends=[nlme quantreg SparseM]; }; + phenmod = derive2 { name="phenmod"; version="1.2-7"; sha256="1gxag58gbm3xmy9w0qx7j70bgdy8bwwjh2xz1iffbghvshximi1s"; depends=[gstat lattice pheno RColorBrewer]; }; + pheno = derive2 { name="pheno"; version="1.7-0"; sha256="1hg2gqz3ibawn5ah1hffgfp15cis75nwd04jha09mjpkn1w8h9lg"; depends=[nlme quantreg SparseM]; }; phenoCDM = derive2 { name="phenoCDM"; version="0.1.3"; sha256="1cyqwc36zwa2a4ljy0xnqz0hhw0r98qk2an5y002lrchkqydplwp"; depends=[rjags]; }; phenocamr = derive2 { name="phenocamr"; version="1.1.4"; sha256="1abcwbds406m1dncn188n8y3fqwxx2h7g7xrca8j6bw2ld69jswd"; depends=[changepoint daymetr httr jsonlite memoise MODISTools zoo]; }; phenofit = derive2 { name="phenofit"; version="0.3.2"; sha256="1mmsaca52m4k73fbq8m29f118q02qps91glfxpw1jjbm5hqgazsv"; depends=[data_table dplyr ggplot2 gridExtra JuliaCall lubridate magrittr numDeriv optimx purrr Rcpp RcppArmadillo ucminf zeallot zoo]; }; phenology = derive2 { name="phenology"; version="7.6"; sha256="0i2w2xkfp0c8r3wjrh5rr8a92dmpw7nvq4fvcacp9glap9qj4pcr"; depends=[HelpersMG lmf numDeriv optimx]; }; phenomap = derive2 { name="phenomap"; version="1.2.1"; sha256="0kpngxqrbahild5nblfvgx2kna43hqqldx5q3b127dnqwzbhfvbb"; depends=[doParallel dplyr phenex plyr raster rgdal stringr]; }; phenopix = derive2 { name="phenopix"; version="2.4.2"; sha256="0rrp4ch32hzlm727xpwsvfsw7d4qypv7iiq8hrg9az6nb39pbvp7"; depends=[bcp doParallel foreach gtools iterators jpeg plyr raster sp stringr strucchange zoo]; }; + phers = derive2 { name="phers"; version="0.0.2"; sha256="0q6y703w9r7ms95w3bczhk5hzfmqap8l0bcgkqj8cp7ans7lkv4h"; depends=[BEDMatrix checkmate data_table foreach iterators MASS]; }; phiDelta = derive2 { name="phiDelta"; version="1.0.1"; sha256="0g1g5516p8i1gfpvsy75rdirib8sx1ki2mbf1cvgsnzh70h72gbv"; depends=[]; }; phia = derive2 { name="phia"; version="0.2-1"; sha256="0rv2akl5a488vax4sd9wnx765mch4vvcmg3iyxyljzl5kpqh5r00"; depends=[car Matrix]; }; philentropy = derive2 { name="philentropy"; version="0.6.0"; sha256="1dpf4hfflp4mcql4na46wzcq1flabkipiwyycz9wj5xbxlmcz2hk"; depends=[KernSmooth poorman Rcpp]; }; @@ -14215,11 +13891,11 @@ in with self; { phonenumber = derive2 { name="phonenumber"; version="0.2.3"; sha256="1gwh7cg1zyy197sj16wcxqyz2rx5z83cd4rwmf22ycpgvz2dwzw9"; depends=[]; }; phonfieldwork = derive2 { name="phonfieldwork"; version="0.0.11"; sha256="0a5qnl1r8g0h1nsp22awp6hy0lkdi6adc729grpz8mbniz4vdlkc"; depends=[phonTools rmarkdown tuneR uchardet xml2]; }; phonics = derive2 { name="phonics"; version="1.3.10"; sha256="1g4gmfz190xaj800gawl79fzhmgimssa31kqzw8a70scp5psz3fw"; depends=[BH data_table Rcpp]; }; - phosphoricons = derive2 { name="phosphoricons"; version="0.1.1"; sha256="0krb1gl5h6k6m289f0hjizrx6ysmv21z9a4h7k6fip0r26fjili6"; depends=[htmltools]; }; + phosphoricons = derive2 { name="phosphoricons"; version="0.1.2"; sha256="1pqp4awyvkq6yrhg97nvfpwz2fi8zajc819swgdfcd7497n4hnnq"; depends=[htmltools]; }; photobiology = derive2 { name="photobiology"; version="0.10.10"; sha256="14bagnhh955a5nhm5ywrwzpbf7afabm7pycmkxay2jidj1hj8xm8"; depends=[dplyr lubridate plyr polynom rlang splus2R stringr tibble tidyr zoo]; }; photobiologyFilters = derive2 { name="photobiologyFilters"; version="0.5.2"; sha256="0n987klwyj06xikmvg9cvsjzrxll1d7p358jw4ls0j46byki98s5"; depends=[photobiology]; }; - photobiologyInOut = derive2 { name="photobiologyInOut"; version="0.4.23"; sha256="1g73pjh7yqbdn8sd8r3w19l67yvmxyxd2zwsvywvdh1jj2cn6s7h"; depends=[anytime colorSpec dplyr lazyeval lubridate photobiology readr readxl stringr tibble tidyr]; }; - photobiologyLEDs = derive2 { name="photobiologyLEDs"; version="0.4.3-1"; sha256="0inhl6ba1fzkak4752m60hkm6fzapzyz5kchvz18yv33dmm13v1c"; depends=[photobiology]; }; + photobiologyInOut = derive2 { name="photobiologyInOut"; version="0.4.24"; sha256="08lcgm4i7r71v46ni88n5jpw41rwx6xkjnglnz4gqbj3wwlqr3zv"; depends=[anytime colorSpec dplyr lubridate photobiology readr readxl stringr tibble tidyr tidyselect]; }; + photobiologyLEDs = derive2 { name="photobiologyLEDs"; version="0.5.0"; sha256="0735lrdxygs61xfq6n5v0m6k5j6v4758v8v0d1alyg6i1w8x1j59"; depends=[photobiology]; }; photobiologyLamps = derive2 { name="photobiologyLamps"; version="0.5.0"; sha256="1gz8giflh5mjam5bivv161vi8fk9ckailbz8fszv5azyn937jc7q"; depends=[photobiology]; }; photobiologyPlants = derive2 { name="photobiologyPlants"; version="0.4.2"; sha256="0ab5ks72mb5x03xc0ww9fcl0h13ja8402b1s670lqmmhyvp6fj3s"; depends=[photobiology photobiologyWavebands]; }; photobiologySensors = derive2 { name="photobiologySensors"; version="0.5.0"; sha256="122cfy6nsxngd8hnbq5frkgnzrb9fxw83l7mfwk0wy6gx7zsfx5s"; depends=[photobiology]; }; @@ -14236,7 +13912,6 @@ in with self; { phyloclim = derive2 { name="phyloclim"; version="0.9.5"; sha256="107kilh0gwr84ig54g92zyk7zv553pky2bzpjqgf9fjwbm6fvmrs"; depends=[ape raster sp]; }; phylocomr = derive2 { name="phylocomr"; version="0.3.2"; sha256="1qdhf6a7cqp12i4macy5wcbk6mf01fqbm4rc11yl63qr72zwrbhy"; depends=[sys tibble]; }; phylogram = derive2 { name="phylogram"; version="2.1.0"; sha256="1p4h5pirc0m5pzc18q0jk3mcmb5n48gdf9abz03vml3a209xxl2v"; depends=[ape]; }; - phyloland = derive2 { name="phyloland"; version="1.3"; sha256="10g40m6n2s4qvnzlqcwpy3k0j7bxdp79f586jj910b8p00ymrksp"; depends=[ape]; }; phylolm = derive2 { name="phylolm"; version="2.6.2"; sha256="04pz7i44s8w6py4nk2zilzjlkrf1c5dbb6jij7zfkk49hvslbynn"; depends=[ape future_apply]; }; phylometrics = derive2 { name="phylometrics"; version="0.0.1"; sha256="1pmr6l3wmaf91wdlsc5m63l07fibngnly2qzkma0rdi463ii03il"; depends=[mvtnorm]; }; phylopath = derive2 { name="phylopath"; version="1.1.3"; sha256="1j0gqd5027zd7xw6c8gkdqxwzqf0gw73m709gxqzk91xscnshg6q"; depends=[ape ggm ggplot2 ggraph igraph MuMIn pbapply phylolm purrr tibble]; }; @@ -14252,7 +13927,7 @@ in with self; { phytools = derive2 { name="phytools"; version="1.0-3"; sha256="0zdkh8v6wyn576gdxiknls0ysks9pr1fwkj9q5j548z8mb3axqmz"; depends=[ape clusterGeneration coda combinat expm maps MASS mnormt nlme numDeriv phangorn plotrix scatterplot3d]; }; phytotools = derive2 { name="phytotools"; version="1.0"; sha256="049znviv2vvzv23biy1l28axm7bc7biwmq4bnn0cnjqgkk48ysz3"; depends=[FME insol]; }; piRF = derive2 { name="piRF"; version="0.1.0"; sha256="04k09ylc6hqw57dlv7sfnisn1167dr550y1j9xl7prvlf3jksg06"; depends=[Rdpack]; }; - piar = derive2 { name="piar"; version="0.3.2"; sha256="1z78cf0zqxfdx4lqip17v3c7jdkq1g8db8231az8bv527n2gqh8p"; depends=[gpindex]; }; + piar = derive2 { name="piar"; version="0.4.0"; sha256="0ksgbx53zv0s636z511b0slnxpwx0majj4j1rf9vp7ljwhmzcmas"; depends=[gpindex]; }; picante = derive2 { name="picante"; version="1.8.2"; sha256="19savjzj44b7ifdxcp02ynj22z4n4ikq2aipc74ljzy3yykmqmjn"; depends=[ape nlme vegan]; }; picasso = derive2 { name="picasso"; version="1.3.1"; sha256="1z7zm88wjp7fia7054l7i55f152iddrjj9wbcpcskhc8s6kfg53c"; depends=[MASS Matrix]; }; picker = derive2 { name="picker"; version="0.2.6"; sha256="1n7h1lvrivy7czzhisd9p3g187ivcyhzyjj7ahkimyb296gy8z1b"; depends=[htmlwidgets]; }; @@ -14260,11 +13935,10 @@ in with self; { piecemaker = derive2 { name="piecemaker"; version="1.0.1"; sha256="1i9k88i0rqsbf2564ims69x1pind1xgvljaf9smnnjpi77442jiw"; depends=[rlang stringi stringr]; }; piecepackr = derive2 { name="piecepackr"; version="1.10.3"; sha256="1idlmg05988y834a9af0rz2wsris541ipvx2lxh8f6vsw0gx0pix"; depends=[gridGeometry grImport2 jpeg png purrr R6 rlang stringr tibble]; }; piecewiseSEM = derive2 { name="piecewiseSEM"; version="2.1.2"; sha256="1qxwc1drx26p4cgymrfjmg5i7ypl7gddv40virkpmc0qaag9pq36"; depends=[car DiagrammeR emmeans igraph lme4 MASS multcomp nlme]; }; - piggyback = derive2 { name="piggyback"; version="0.1.1"; sha256="1d448hkk772d21ix1l1cgq2a0spyjnppyrn1myjcv3dcrfxndn83"; depends=[clisymbols crayon fs gh httr jsonlite lubridate memoise]; }; + piggyback = derive2 { name="piggyback"; version="0.1.2"; sha256="0qpgwq7caxmgkrnl873n1f7c7wysynlkmv2pq64qms9nl4vi8q9r"; depends=[cli fs gh glue httr jsonlite lubridate memoise]; }; pillar = derive2 { name="pillar"; version="1.7.0"; sha256="1fqk18vc9ashf12gdqkdi6n1nj5lh324vwhgiib3b2fcb2bghhbq"; depends=[cli crayon ellipsis fansi glue lifecycle rlang utf8 vctrs]; }; pim = derive2 { name="pim"; version="2.0.2"; sha256="0kwlm6n23ccs0jz4plsqprg6inj3qv74zhvg9gpxyj3ksvdxp58i"; depends=[BB nleqslv]; }; pimeta = derive2 { name="pimeta"; version="1.1.3"; sha256="1mx0m438db4n041bns6sm8sr8vrj6w8b2kvpmrkkp0bly2vpv40q"; depends=[ggplot2 Rcpp RcppEigen scales]; }; - pinbasic = derive2 { name="pinbasic"; version="1.2.2"; sha256="0mcw68wrixz2jf62nfifdgg8bnp4h1p3byivz28wi61blj8iaa75"; depends=[fastcluster ggplot2 lubridate Rcpp reshape2 scales]; }; pinfsc50 = derive2 { name="pinfsc50"; version="1.2.0"; sha256="1547xyxmfb7zi8h9bsm6k67dcw4hpp129xzvmgwfw7r6p4af47zd"; depends=[]; }; pingers = derive2 { name="pingers"; version="0.1.1"; sha256="09np6aph6rhvdh6mwky8a57i38bi2amwi7x91p9kfb2mzkql8k8w"; depends=[data_table dplyr lubridate plotly reshape2 stringr tibble tictoc tidyselect]; }; pingr = derive2 { name="pingr"; version="2.0.1"; sha256="08bjbzr5vvzf48b0k8vr3ads13f1zxvmfc0djpzxd7p90pkm75nl"; depends=[processx]; }; @@ -14277,6 +13951,7 @@ in with self; { pipe_design = derive2 { name="pipe.design"; version="0.5.1"; sha256="0r0szkdzifxmnnbr6675w8ij4zwqgxj3gwahc7a74mxr51f7qh8j"; depends=[ggplot2 gtools xtable]; }; pipeGS = derive2 { name="pipeGS"; version="0.4"; sha256="0ki4i70r5f195b4jfv3hxlxz3zj57mhy2yf4984bwr11impilz5w"; depends=[]; }; pipeR = derive2 { name="pipeR"; version="0.6.1.3"; sha256="16lj227x24pviqb4dcrj7a55l31p5mm0cbwsb6m3y3n6k5wcd2nh"; depends=[]; }; + pipebind = derive2 { name="pipebind"; version="0.1.0"; sha256="0p1czai6xfvxxqlbznr3wl90i3a31cnjnfxhc838s1ml1pqvy5d5"; depends=[]; }; pipefittr = derive2 { name="pipefittr"; version="0.1.2"; sha256="0pzd7f0rhn0rydncki666zlajdwyiay3apa17cb0xy5454d99mvh"; depends=[magrittr miniUI rstudioapi shiny stringr]; }; pipeliner = derive2 { name="pipeliner"; version="0.1.1"; sha256="1cyyd1bin89dh0zrhic3i541bj8nnaphg6jq2jqkhnxn2nvax11g"; depends=[]; }; pipenostics = derive2 { name="pipenostics"; version="0.1.7"; sha256="0c0qnh8kjgnmsg8arj7jhpdyjcdm58j9lzwi0yvl7ygk4k2klgv3"; depends=[checkmate]; }; @@ -14290,7 +13965,7 @@ in with self; { pivottabler = derive2 { name="pivottabler"; version="1.5.3"; sha256="0j19y4pq0y6li21fwf1sdbzy16gddjlllj9laaslsxp76zc1sjnl"; depends=[data_table dplyr htmltools htmlwidgets R6]; }; piwikproR = derive2 { name="piwikproR"; version="0.3.1"; sha256="110lyvl7dspqki5yv95j6jvxswyfd962iidsh1hraqvhs4k44s9q"; depends=[digest dplyr fs httr lubridate magrittr purrr readr rjson rlang stringr tibble]; }; pixarfilms = derive2 { name="pixarfilms"; version="0.2.1"; sha256="1qycg7ar9l3myj14xvidxrm9svdf5xmw7ss0m33q266nzwssiqpk"; depends=[tibble]; }; - pixelclasser = derive2 { name="pixelclasser"; version="1.0.0"; sha256="155igzq6wsy5nvx5vxkykh9z8q1winb6sl9z473d5jqj78yq3icx"; depends=[jpeg tiff]; }; + pixelclasser = derive2 { name="pixelclasser"; version="1.1.0"; sha256="18jm122b8rd5idij8l6q4qgs64p54yvha8n1qb3ihr9h3q2g72a4"; depends=[jpeg tiff]; }; pixelpuzzle = derive2 { name="pixelpuzzle"; version="1.0.0"; sha256="1bgy9anhgmjfy97816g2ns5pg5vsm7dwdn5l01m2zma6qnq01knm"; depends=[beepr cli stringr]; }; pixels = derive2 { name="pixels"; version="0.1.1"; sha256="1vvahrajm8ys5vgfc0iyzj2a6vzvgaakkj6i0m2sy40l2w44dn0q"; depends=[htmlwidgets miniUI shiny]; }; pixiedust = derive2 { name="pixiedust"; version="0.9.1"; sha256="1jy3xr4wpfs8j3giyia1kwrb5nlmqjbjwvj9qpax6izmcdk4srz2"; depends=[broom checkmate htmltools knitr labelVector magrittr reshape2 scales]; }; @@ -14302,8 +13977,8 @@ in with self; { pkgcond = derive2 { name="pkgcond"; version="0.1.1"; sha256="03a4blq3niw1mljzylamvmr3l43czqlww4i6n7zb0dlym9x8gs1w"; depends=[assertthat]; }; pkgconfig = derive2 { name="pkgconfig"; version="2.0.3"; sha256="0l1qph8zyi2sic3k2qcd7vlfl7rzfh1q7z7zvjkl5f7y1x2fy3rk"; depends=[]; }; pkgdepR = derive2 { name="pkgdepR"; version="1.0.0"; sha256="098fcj1s5rcjxmn57449f4zk9z2w4mqwxkvxxjazd1nj7wa45z8p"; depends=[dplyr magrittr scales viridisLite visNetwork]; }; - pkgdepends = derive2 { name="pkgdepends"; version="0.3.0"; sha256="1pzfm9k8s7w2jacachppgznf8562dshzm23yg7vwd37b7wvr6qxn"; depends=[callr cli crayon curl desc filelock glue jsonlite lpSolve pkgbuild pkgcache prettyunits processx ps R6 rprojroot withr zip]; }; - pkgdown = derive2 { name="pkgdown"; version="2.0.2"; sha256="11grx7a2rz6b4kwspm7c8crjav677c22hysnp4bkwh5g8kr5nm2h"; depends=[bslib callr crayon desc digest downlit fs httr jsonlite magrittr memoise purrr ragg rlang rmarkdown tibble whisker withr xml2 yaml]; }; + pkgdepends = derive2 { name="pkgdepends"; version="0.3.1"; sha256="1gl05b6m6d9g8cdyjnrvvc971dskxg5aimmh56bfww98g6hn6hlf"; depends=[callr cli crayon curl desc filelock glue jsonlite lpSolve pkgbuild pkgcache prettyunits processx ps R6 rprojroot withr zip]; }; + pkgdown = derive2 { name="pkgdown"; version="2.0.3"; sha256="0wqga9bcl7wmvkwpkkmf5hx1cl7rjq5ddvqmxhl4p1dczys3adnr"; depends=[bslib callr crayon desc digest downlit fs httr jsonlite magrittr memoise purrr ragg rlang rmarkdown tibble whisker withr xml2 yaml]; }; pkgfilecache = derive2 { name="pkgfilecache"; version="0.1.4"; sha256="1fr650yb4wjz6flq4f8p2p5bck5q4kkrhlhlwjn832payq9p4zsp"; depends=[downloader rappdirs]; }; pkggraph = derive2 { name="pkggraph"; version="0.2.3"; sha256="1isiywgm20rypc5qr03p0k7lis76zzd96x5ncbvia644d2n13brm"; depends=[curl data_table dplyr ggnetwork ggplot2 htmltools igraph intergraph Matrix network networkD3 plyr RColorBrewer tibble]; }; pkglite = derive2 { name="pkglite"; version="0.2.0"; sha256="1qjym8kkbmzdz46xn6a4ir8b07ws30s3m7zdrgh98nf0vrv9bkj8"; depends=[cli magrittr remotes]; }; @@ -14316,15 +13991,14 @@ in with self; { pkgverse = derive2 { name="pkgverse"; version="0.0.1"; sha256="0lsv7s9vsjvfpy19nxbdlbm363j01wwqqnrp0nlrik590hfq4w83"; depends=[devtools usethis]; }; pkmon = derive2 { name="pkmon"; version="1.0"; sha256="0j2v4zlf7vgy5gld29xiii15m9i85cpiwc25rmzjm02cz2p32c72"; depends=[]; }; pkr = derive2 { name="pkr"; version="0.1.2"; sha256="0m045dlcq3rls1w0smy4jvk3c57ckpqdv8xnz261k1gnnyjmz1k2"; depends=[binr foreign forestplot rtf]; }; - pks = derive2 { name="pks"; version="0.4-1"; sha256="1lwm65s2b9y6vr1yr683n535yz8hbzc6j289a6yp45v2yai72m07"; depends=[sets]; }; + pks = derive2 { name="pks"; version="0.5-0"; sha256="1ik6cg17wv5wn2zync4xqr2f7djsk91b8wq13sgqaspjm80gmm3s"; depends=[sets]; }; pksensi = derive2 { name="pksensi"; version="1.2.2"; sha256="1papwi3ivlrk53aiqr9bpmfd96f7d8bpf22q6s8s25gb7sichlm0"; depends=[data_table deSolve doParallel dplyr foreach getPass ggplot2 magrittr reshape2]; }; plRasch = derive2 { name="plRasch"; version="1.0"; sha256="1rnpvxw6pzl5f6zp4xl2wfndgvqz5l3kiv9sh4cpvhga0gl8zjaw"; depends=[survival]; }; plac = derive2 { name="plac"; version="0.1.1"; sha256="08kqnjzbfygnbqvqg5wyw148kfhjqxy46y4vaiq9zzwzj58w8vzn"; depends=[Rcpp RcppEigen survival]; }; placer = derive2 { name="placer"; version="0.1.3"; sha256="0d7b6mkyyrcjn1pqxlj9mjis6vzks986i7vhc8ffkp8hz8sc7271"; depends=[]; }; places = derive2 { name="places"; version="0.1.1"; sha256="08w6z5gbsskcbi5j1rml9mi9qdab6w2q58vz80h6xc6bh6mr0fab"; depends=[data_table dplyr geosphere googleway hms rgdal rlang sp stringr tidyr]; }; - plainview = derive2 { name="plainview"; version="0.1.1"; sha256="095y0cjp7g0h1kdbiwh1k2mj0ap8vm54nx8mf84ckamzc1jnmlfk"; depends=[gdalUtils htmltools htmlwidgets lattice png raster viridisLite]; }; + plainview = derive2 { name="plainview"; version="0.2.0"; sha256="06aghs1i0nbyyx5ll8fwzlz6dqhvckr63xvx8xv52i8m7x6rml4y"; depends=[htmltools htmlwidgets lattice png raster viridisLite]; }; plan = derive2 { name="plan"; version="0.4-4"; sha256="0xpl1hrq0cs1bi8wn1bb1d4lmb6g1dfzp8wlwa9g2bc12yw5q8hg"; depends=[]; }; - planar = derive2 { name="planar"; version="1.6"; sha256="0x5xdb2afpc1w8s217hy765mz938kg5b5j7vzqzhlsh2dzdjccpj"; depends=[cubature dielectric ggplot2 plyr Rcpp RcppArmadillo reshape2 statmod]; }; planets = derive2 { name="planets"; version="0.1.0"; sha256="01zh7lgaykr9p186yy0vksn2pmc69b3xxh78w7z6wclvqjb7zh1p"; depends=[]; }; plantecophys = derive2 { name="plantecophys"; version="1.4-6"; sha256="1qf9a38n8nvvz8dvqra9mdsmkbkhxymjrin0wfis8g1ndf1f406c"; depends=[]; }; plantecowrap = derive2 { name="plantecowrap"; version="1.0.4"; sha256="0syxf63xy5whzw03ys5cxyw7689mr7ihgmqddv53jb8rlbwm84p8"; depends=[ggplot2 minpack_lm plantecophys tidyr]; }; @@ -14338,7 +14012,7 @@ in with self; { pleiotest = derive2 { name="pleiotest"; version="1.0.0"; sha256="05mgz42wn1y7q8ffgvak22r3k40q9rv1qvpal8yycp83p7hdzg7v"; depends=[RColorBrewer Rcpp RcppArmadillo]; }; plfMA = derive2 { name="plfMA"; version="2.0"; sha256="14v3q4sv3inax3b1sp0i4scrz70ca9yphzikhx0z9dh2w5mggq0k"; depends=[gWidgets2 gWidgets2tcltk limma RColorBrewer tkrplot]; }; plfm = derive2 { name="plfm"; version="2.2.5"; sha256="0vcr1abzslsds0w4y2gyrrlbmqmxi5007km5fbj1xq2mrwjmngpp"; depends=[abind sfsmisc]; }; - plgp = derive2 { name="plgp"; version="1.1-9"; sha256="1wndhk4i2zngpvq85dgpwn80p5av7ksfap21wq95vf3zgmzy5x2a"; depends=[mvtnorm tgp]; }; + plgp = derive2 { name="plgp"; version="1.1-10"; sha256="1dhqlps60w21a9l1f2yw5p9yj7v9pfpgzdwi8dg2r604cfw6sjmd"; depends=[mvtnorm tgp]; }; pliman = derive2 { name="pliman"; version="1.1.0"; sha256="0w7r5xf3n4w455wbbpwjfwzf6ia0p02v9gb23c4h1dg2v4ma4s02"; depends=[lattice]; }; plink = derive2 { name="plink"; version="1.5-1"; sha256="0rn2i9i8af9aq0xgxhpcdchs2952lq2d2sg8x3js0zi3vcml76k0"; depends=[lattice MASS statmod]; }; plinkFile = derive2 { name="plinkFile"; version="0.1.0"; sha256="0803hp822v9rqh4h437q2nmab19yamc4dbyi6iimm67ykp0d5xss"; depends=[]; }; @@ -14349,11 +14023,10 @@ in with self; { plot_matrix = derive2 { name="plot.matrix"; version="1.6.2"; sha256="1fsgzjcllrdlf55ww7dhyx1iaa59y2a6f1b1591j8m8in1fh7n6n"; depends=[]; }; plot3D = derive2 { name="plot3D"; version="1.4"; sha256="1h59zlsyzbjylaziwavppl9bjmnba4iiq34772y3dys6fqclajnh"; depends=[misc3d]; }; plot3Drgl = derive2 { name="plot3Drgl"; version="1.0.2"; sha256="15m48rzs96mgsnlf77823z2c58gry6hab00xg40myfba8j8li1xa"; depends=[plot3D rgl]; }; - plot3logit = derive2 { name="plot3logit"; version="3.1.0"; sha256="0iwhaly6lzpfaanyy1qayl6faihw5rkcnh21czdr1g0f9rjimyrb"; depends=[dplyr ellipse forcats generics ggplot2 ggtern lifecycle magrittr purrr Rdpack stringr Ternary tibble tidyr tidyselect]; }; + plot3logit = derive2 { name="plot3logit"; version="3.1.2"; sha256="173w3rbsy78km4h33dbpdc0a9m1i4xj3f32b8v9sbliaihn8zh9b"; depends=[dplyr ellipse forcats generics ggplot2 ggtern lifecycle magrittr purrr Rdpack stringr Ternary tibble tidyr tidyselect]; }; plotDK = derive2 { name="plotDK"; version="0.1.0"; sha256="0lyhhc8yjxj3jhw72pn7i565z64mifi5iyc375yavs7axlcsl2nr"; depends=[dplyr ggplot2 mapproj plotly purrr rlang]; }; plotGMM = derive2 { name="plotGMM"; version="0.2.2"; sha256="1cgjajw3dprdlq9ri0gllbxcy33x311mbp9xdds8fgq6cs42ggyb"; depends=[amerika ggplot2 wesanderson]; }; plotHMM = derive2 { name="plotHMM"; version="2022.1.25"; sha256="0qkr6w558aj9nbchvwi48k6m4g36zd3q2phbhl95rawsxv3dwdja"; depends=[Rcpp RcppArmadillo]; }; - plotKML = derive2 { name="plotKML"; version="0.8-2"; sha256="1hdyvff76k40lrzw4vq8azdpxzxxabgkgxixkqvnw5cda362nyfh"; depends=[aqp classInt colorRamps colorspace dismo gstat landmap pixmap plyr raster RColorBrewer rgdal scales sf sp spacetime stars stringr XML zoo]; }; plotMCMC = derive2 { name="plotMCMC"; version="2.0.1"; sha256="0vxw6kbs1xvzi3sklxac9q1j4cbr8alr9c8fwifwyvpzpdk48ihf"; depends=[coda gplots lattice]; }; plotMElm = derive2 { name="plotMElm"; version="0.1.5"; sha256="0wwqzrpkmq9gzazdzlk62qig6vz43niada6fxh1wcsjqjwkcccgp"; depends=[ggplot2 interactionTest]; }; plotROC = derive2 { name="plotROC"; version="2.2.1"; sha256="0bk8j2lp80zcz4kkig1y5a1ig8vbjh7b4inzc46bn07ns1rdjgzg"; depends=[ggplot2 gridSVG plyr rlang shiny]; }; @@ -14372,33 +14045,31 @@ in with self; { plotrix = derive2 { name="plotrix"; version="3.8-2"; sha256="07xwq3505qb2yak7pfda22yqwifj6m78f8b5rm0ym74808qrawmv"; depends=[]; }; plotrr = derive2 { name="plotrr"; version="1.0.0"; sha256="07ilqpa3ypqb2gpnq23r9v4kkfxz06mcak9si9adr9sf6c7gqwxz"; depends=[dplyr ggplot2]; }; plotscale = derive2 { name="plotscale"; version="0.1.6"; sha256="0h2g0rv1lh70nqmqydgg5swwnwmy08wbjajxyb1c2a716rad765j"; depends=[]; }; - plotwidgets = derive2 { name="plotwidgets"; version="0.4"; sha256="1w7c9grw4pyyra230196yq32snr4wdg6xi8vh4dx5df2v500wz22"; depends=[]; }; - plpoisson = derive2 { name="plpoisson"; version="0.2.0"; sha256="0x0vcmr7y2rp5lz4r97vjp8cn1l297hcimwf691a2l60m8s856hz"; depends=[]; }; + plotwidgets = derive2 { name="plotwidgets"; version="0.5.1"; sha256="1n2hls9qzr3z1xamggj4l48ksz5m51qn5x63flyk34bh0cyhadi1"; depends=[]; }; + plpoisson = derive2 { name="plpoisson"; version="0.3.0"; sha256="15g5z07m0rf4hm6nynrb3bmsiakg7j790lsy30ksxswxrzwb9a1k"; depends=[]; }; pls = derive2 { name="pls"; version="2.8-0"; sha256="1gqq8rcq6p0hs2gfzwfj690rz3pwywmnv8qzcv0wsd6aaqkskwzg"; depends=[]; }; - plsRbeta = derive2 { name="plsRbeta"; version="0.2.6"; sha256="12i1krzvza8wjbafc8rx68hqmrj215mip39xg7sn6nifxi93pi1y"; depends=[betareg boot Formula MASS mvtnorm plsRglm]; }; + plsRbeta = derive2 { name="plsRbeta"; version="0.2.9"; sha256="1r2vnssavd9921ll7a023asbzvnjr8ax7ilb861f9rkx2fxl8z0j"; depends=[betareg boot Formula MASS mvtnorm plsRglm]; }; plsRcox = derive2 { name="plsRcox"; version="1.7.6"; sha256="0dg4vpy15z4x61qyqc9nvqa1788g6phlrzjrk1xhns5x2h8cicma"; depends=[kernlab lars mixOmics pls plsRglm risksetROC rms survAUC survcomp survival]; }; - plsRglm = derive2 { name="plsRglm"; version="1.3.0"; sha256="1szx8kjqg47hw1b03n6rs8rydn1698s64j45q8bly7kpfxqmxvsr"; depends=[bipartite boot car MASS mvtnorm]; }; + plsRglm = derive2 { name="plsRglm"; version="1.5.0"; sha256="10zbl8y61jdsbhz8dqfd4r7dhzkkr0a02v94d3pnk2v89n5nf7ls"; depends=[bipartite boot car MASS mvtnorm]; }; plsVarSel = derive2 { name="plsVarSel"; version="0.9.7"; sha256="0ifk08fj6kf2la3mwiw7xlk62nw2y595rxriqaxp217fx0al9pz6"; depends=[bdsmatrix genalg MASS MSQC mvtnorm pls praznik progress]; }; plsdepot = derive2 { name="plsdepot"; version="0.1.17"; sha256="1i00wxr451xpfy6dnvcm11aqf9106jsh5hj7gpds22ysgm4iq5w4"; depends=[]; }; plsdof = derive2 { name="plsdof"; version="0.3-0"; sha256="1axi8bailiq9mjs0dvasy895b7c62114hdsaygxwz4zymfa6a3ny"; depends=[MASS]; }; plsgenomics = derive2 { name="plsgenomics"; version="1.5-2"; sha256="1pvb50nv6jc99bm2hsxpzazg26y49yi24wwwim5xcjj6j1szbip4"; depends=[boot fields MASS plyr reshape2 RhpcBLASctl]; }; plsmod = derive2 { name="plsmod"; version="0.2.0"; sha256="1xw3m4z78g1ms4kl6k5jh41q8ip4v3ndm91jv0j9lczb2zqhnvxs"; depends=[dplyr generics magrittr mixOmics parsnip purrr rlang tibble tidyr]; }; plsmselect = derive2 { name="plsmselect"; version="0.2.0"; sha256="044mwdqv5vw0apmx3yhn6xkdmw6baalvb8c6hhmawcs279kwi1m9"; depends=[dplyr glmnet mgcv survival]; }; - plsr = derive2 { name="plsr"; version="0.0.1"; sha256="0l413m49zjpb35v0zw8dlxn53nh7fghinbmwfmldl3jgdvay2s7x"; depends=[boot ggplot2 reshape2 shiny]; }; pltesim = derive2 { name="pltesim"; version="1.0"; sha256="0mvqp8di2gwhd9wc9kvnnpxd3hkr9b9lj6g5qlkqcbrgkq6fjahs"; depends=[coreSim ggplot2]; }; plu = derive2 { name="plu"; version="0.2.1"; sha256="12m2mb5h5xniy870akmbzgjp6019pnjjzrdkifmlri8vhbyilvh9"; depends=[backports lifecycle]; }; plugdensity = derive2 { name="plugdensity"; version="0.8-4"; sha256="0kj7vixfyg4nxq05xgmrhsjd56myz2s1jplhbkmq25kf2r9pb89y"; depends=[]; }; plumber = derive2 { name="plumber"; version="1.1.0"; sha256="0rwr3vx0y2n70bz4aqd9iag9s0ksz4vlvsw16qz84wfcky1b79pi"; depends=[crayon ellipsis httpuv jsonlite lifecycle magrittr mime promises R6 rlang sodium stringi swagger webutils]; }; plumberDeploy = derive2 { name="plumberDeploy"; version="0.2.1"; sha256="0icl35wck94scjyqw6di2sl6fq7zlvd8hm13fw79iqr0wyrich0r"; depends=[analogsea jsonlite lifecycle ssh]; }; plumbertableau = derive2 { name="plumbertableau"; version="0.1.0"; sha256="1wkd15l5s7fs1nzyl83s41wbrx87yhklpw1fb6f3llrgbjn8rd77"; depends=[curl debugme glue htmltools httpuv httr jsonlite knitr later magrittr markdown plumber promises rlang stringi urltools]; }; - plumbr = derive2 { name="plumbr"; version="0.6.9"; sha256="1avbclblqfy57pd72ximvj3zq92q1w8vszvyf6fw75j5rfwdaibk"; depends=[objectSignals]; }; + plumbr = derive2 { name="plumbr"; version="0.6.10"; sha256="1ncrqg8j4baqrjkd95fkdanaylwl1ygdr7xzc891gig3rknx0n1i"; depends=[objectSignals]; }; pluralize = derive2 { name="pluralize"; version="0.2.0"; sha256="1s3jp41j8c03qb5zisj6m12ky7cz3n71d6p5apz0r0yn35inrhah"; depends=[V8]; }; plus = derive2 { name="plus"; version="1.0"; sha256="1l7lvnq7vahj8m7knmr4q3wj00ar7iq89j45a2dqn2bh0qyj68ls"; depends=[]; }; pluscode = derive2 { name="pluscode"; version="0.1.0"; sha256="1j9yr5j6mb346a5dn7v9bsppgnxdj1ryimlla4a08rv7bjyq5i6q"; depends=[httr jsonlite]; }; plusser = derive2 { name="plusser"; version="0.4-0"; sha256="1g100dh8cvn9q09j0jbkw4xmwjdp1lm4651369975fm99nrlp1j9"; depends=[lubridate plyr RCurl RJSONIO]; }; plyr = derive2 { name="plyr"; version="1.8.7"; sha256="0zz88q055c38b9xqzfg1mwm7ikxzlyx3pnk16sfa8dbh2pqxm7vx"; depends=[Rcpp]; }; pmc = derive2 { name="pmc"; version="1.0.4"; sha256="0y2h6r8dx721n0wwbc3i5j50j694kxanc4vxwr07939145bvpfac"; depends=[dplyr geiger ggplot2 ouch tidyr]; }; - pmcgd = derive2 { name="pmcgd"; version="1.1"; sha256="1pybzvyjmzpcnxrjsas06diy3x83i1r5491s6ccyr63l56hs55d5"; depends=[mixture mnormt]; }; pmclust = derive2 { name="pmclust"; version="0.2-1"; sha256="0wldf0bj406qxmlc7hsbamiak7qcwf8ixng9dfkswh511m3p05jd"; depends=[MASS pbdMPI]; }; pmd = derive2 { name="pmd"; version="0.2.1"; sha256="14xra1d6qx6gxnpiwfsxz200qhmm7s4zy2j8h5kwbvbpnykdyr5c"; depends=[data_table enviGCMS igraph RColorBrewer]; }; pmetar = derive2 { name="pmetar"; version="0.3.3"; sha256="0vfsmdkw62ahhic2gqgsbyphnx2phjkswpn3ymb9gdpnzy45aq6h"; depends=[curl dplyr httr lubridate magrittr RCurl stringr tidyr]; }; @@ -14407,7 +14078,7 @@ in with self; { pmledecon = derive2 { name="pmledecon"; version="0.1.0"; sha256="0bpfx3lkg7wl7b189gl1m2xz72zna98wiw98yx3hvk6ndv55jy03"; depends=[rmutil splitstackshape]; }; pmml = derive2 { name="pmml"; version="2.5.2"; sha256="1faad5yqyh6dx40056w74vlyw4wxjgh41jv8b2vf2gh26laf22kk"; depends=[stringr XML]; }; pmmlTransformations = derive2 { name="pmmlTransformations"; version="1.3.3"; sha256="0315kb5x04pidpzr04yaxyynp0mz4ilzp7vkspq4agjkds5hyc88"; depends=[]; }; - pmparser = derive2 { name="pmparser"; version="1.0.4"; sha256="0qf71w6m6cgmx2isizadihjxildqrxygm8vm906fb13ydxslj1xq"; depends=[data_table DBI foreach glue iterators jsonlite R_utils RCurl withr xml2]; }; + pmparser = derive2 { name="pmparser"; version="1.0.10"; sha256="0p8fd4xrfvn27739m1rsal8sgddycbjzla5i2v0jkrkjr76sakl3"; depends=[curl data_table DBI foreach glue iterators jsonlite R_utils RCurl withr xml2]; }; pmr = derive2 { name="pmr"; version="1.2.5"; sha256="0dq97dfjmgxlhr3a2n20vyyzfmamcicw878hdxpw31lw02xs6yls"; depends=[]; }; pmsampsize = derive2 { name="pmsampsize"; version="1.1.2"; sha256="0msbkjpzssgkc4ndx9s1rb8mgg07bx7fdlq48j5s8ak8n1gwdkyk"; depends=[]; }; pmultinom = derive2 { name="pmultinom"; version="1.0.0"; sha256="0p2amb3y4jl24r21fii1qpmdbn5pfgywrx8k7x1jxpg49rk7k0rp"; depends=[fftw]; }; @@ -14415,8 +14086,7 @@ in with self; { pmxTools = derive2 { name="pmxTools"; version="1.2.3"; sha256="09hnkzxwbj025an5kn91sw1sanxlcnmsi9wz8545fkcna78384zk"; depends=[chron data_tree DiagrammeR dplyr ggdist gghalves ggplot2 ggrepel gridExtra magrittr MASS stringr tibble xml2]; }; pmxpartab = derive2 { name="pmxpartab"; version="0.5.0"; sha256="13r4xy0jvxdwjz3gic67fzgq87v18vs7df1ggd3hq89h6f28fxar"; depends=[data_table htmltools knitr table1]; }; png = derive2 { name="png"; version="0.1-7"; sha256="0g2mcp55lvvpx4kd3mn225mpbxqcq73wy5qx8b4lyf04iybgysg2"; depends=[]; }; - pnmtrem = derive2 { name="pnmtrem"; version="1.3"; sha256="0053gg368sdpcw2qzydpq0c5v2cxdlwgf5k68cbw0yx41csjgvz0"; depends=[MASS]; }; - poLCA = derive2 { name="poLCA"; version="1.6.0"; sha256="1yg1iapmkpxdajnf1a8qn9b6namfka7a0jjh943h3zx9pdmc9b7h"; depends=[MASS scatterplot3d]; }; + poLCA = derive2 { name="poLCA"; version="1.6.0.1"; sha256="05kbkyrds430v729hi56q48yfwfi5m1f371gpb4h417z5fj6137d"; depends=[MASS scatterplot3d]; }; pocketapi = derive2 { name="pocketapi"; version="0.1"; sha256="0n4fyx4ldm14zy3pz7gygwhahi3p25misvxlmy8l9kqqr51fg26a"; depends=[dplyr glue httr jsonlite magrittr purrr tibble usethis]; }; pocrm = derive2 { name="pocrm"; version="0.13"; sha256="0d4iggxjbl95fz872q9v1wr30nga39sdd5dvwa2zrrm73ak81cz3"; depends=[dfcrm nnet]; }; podcleaner = derive2 { name="podcleaner"; version="0.1.2"; sha256="1r8mvf8bw329n3ifi2dyy4220nbij2rgkvq1xlqzynxf8qadxbrl"; depends=[dplyr fuzzyjoin magrittr progress purrr readr rlang stringi stringr tibble tidyr]; }; @@ -14424,17 +14094,17 @@ in with self; { pogit = derive2 { name="pogit"; version="1.2.0"; sha256="1kap1cpfp0k2vm7w4kjfja37n9z3j7ppiwvsdxl6bgpkf7kcnkp2"; depends=[ggplot2 logistf plyr]; }; poibin = derive2 { name="poibin"; version="1.5"; sha256="1sxryvwwz6ldsnkzdy56p8c895s5yvpcai9ndyjv1x5q3l05wf9v"; depends=[]; }; poilog = derive2 { name="poilog"; version="0.4.1"; sha256="17rq2p251bvzrimac3c5lshlzmwz9in5rl2qq27paz6qa1p429mi"; depends=[]; }; - pointRes = derive2 { name="pointRes"; version="2.0.0"; sha256="17rrdcpvd8v95g5vmbyq5gjpcc3rfbq3m6ajzc56fcizcqd4xx52"; depends=[DescTools dplR ggplot2 plyr TripleR]; }; + pointRes = derive2 { name="pointRes"; version="2.0.1"; sha256="0j5flvjdg0iypybbimxphi8y4f5d7xxk6q4cqiqr7f52y9p9bz79"; depends=[DescTools dplR ggplot2 plyr TripleR]; }; pointblank = derive2 { name="pointblank"; version="0.10.0"; sha256="0890ss04kvj3p8sj0nlrw9lnb2iy3hdg5lcni5sq2in8kxk59228"; depends=[base64enc blastula cli DBI dbplyr digest dplyr fs glue gt htmltools knitr magrittr rlang scales testthat tibble tidyr tidyselect yaml]; }; pointdensityP = derive2 { name="pointdensityP"; version="0.3.5"; sha256="0n7p3b77m47avbr7n85knf31m9rlp43mdl3748ysj6wvxvhnivx4"; depends=[data_table]; }; pointr = derive2 { name="pointr"; version="0.2.0"; sha256="1qfxcyzi2sa49x00hidz054njj9mm7gkhv99faafb9x4gp3pcq0v"; depends=[stringr]; }; poio = derive2 { name="poio"; version="0.0-4"; sha256="12d47hn9rsx2n0fl107dpswfklnh8nkm0kspcxf7yfljayvxr474"; depends=[assertive_base assertive_files assertive_properties assertive_sets assertive_strings assertive_types devtools digest dplyr magrittr purrr R6 stringi tibble whoami]; }; - poisDoubleSamp = derive2 { name="poisDoubleSamp"; version="1.1"; sha256="13wyj9jf161218y4zjv2haavlmanihp9l59cvh7x8pfr9dh2dwr8"; depends=[Rcpp]; }; + poisDoubleSamp = derive2 { name="poisDoubleSamp"; version="1.1.1"; sha256="0s0x3x3f620752ggai0jlkgrg1mh53giyh92q2lpwyvawyg8nyav"; depends=[Rcpp]; }; poisFErobust = derive2 { name="poisFErobust"; version="2.0.0"; sha256="1i6y3745i385y3r45i0xk7ciw1k6brmn709k5qhx8xphq0k4an5n"; depends=[data_table glmmML]; }; poisbinom = derive2 { name="poisbinom"; version="1.0.1"; sha256="0mjxg0s3nck7qrmq4bbrhwxfwr6fqml54s9k8q1mkfzlifa7qyf7"; depends=[Rcpp]; }; poismf = derive2 { name="poismf"; version="0.4.0"; sha256="0hrmirwri30p68m5l6icjkiygkb8950cl6m95xq9caybkl6yjpck"; depends=[Matrix]; }; poisson = derive2 { name="poisson"; version="1.0"; sha256="1diyf1b84sr6iai3ghd3kcp6fc6w7fan49wzs1lzvxxsmp15ag2d"; depends=[]; }; - poisson_glm_mix = derive2 { name="poisson.glm.mix"; version="1.2"; sha256="0328m279jfa1fasi9ha304k4wcybzr7hldww7wn0cl7anfxykbv8"; depends=[]; }; + poisson_glm_mix = derive2 { name="poisson.glm.mix"; version="1.3"; sha256="1r6f9ks5bd9jg0mmxa8dj633pvz7byihyaakmkxg4xqrr1sa9g3f"; depends=[]; }; poissonMT = derive2 { name="poissonMT"; version="0.3-5"; sha256="14qkc8qz3423b13gp6gsp8cbb1nv9wwjjfa4i9zc15qy5i99ha26"; depends=[checkmate MASS robcbi robustbase]; }; poissonreg = derive2 { name="poissonreg"; version="0.2.0"; sha256="0j6435gqc3cmcx7bfvj926s8hyhkiksjavr69iwbdlw0gw3s20j3"; depends=[dplyr generics glue parsnip purrr rlang tibble tidyr]; }; poistweedie = derive2 { name="poistweedie"; version="1.0.1"; sha256="0236cz8fn3la7df8mk1la8hmr0zzjc1majnq8p0c8grma833j6kp"; depends=[]; }; @@ -14449,21 +14119,21 @@ in with self; { pollen = derive2 { name="pollen"; version="0.82.0"; sha256="0vmggbvacpbdz4zvn3cinip1b0ac44vgbydmsk6698hwgx9iwmfp"; depends=[dplyr lubridate purrr]; }; pollimetry = derive2 { name="pollimetry"; version="1.0.1"; sha256="09zmcwlgzl4fnkdg2m424ibv3izzrm595c7pi4mc3bd1g8sa2ypn"; depends=[brms repmis]; }; pollster = derive2 { name="pollster"; version="0.1.3"; sha256="1b5m5g9v8xbs3zz6as4xvzwaqr39477adi4vzxmjvxjsaij6ih5h"; depends=[dplyr forcats labelled rlang stringr tidyr]; }; - polmineR = derive2 { name="polmineR"; version="0.8.5"; sha256="1jb6j0rmcwzszympzfia8vml55fw2rybj2qcv3f54v3cr9hw13ga"; depends=[data_table DT jsonlite knitr magrittr Matrix pbapply RcppCWB slam stringi tm xml2]; }; - polspline = derive2 { name="polspline"; version="1.1.19"; sha256="0rhzf735hmbqfn2xbgcln4sqx7m9far72g5gq9mghgkw016kqglm"; depends=[]; }; + polmineR = derive2 { name="polmineR"; version="0.8.6"; sha256="03w9rkm5a76cl1brljwvv2myaxi0if9rjbgqlzmxvpynnzw1b8wv"; depends=[data_table DT fs jsonlite knitr lifecycle magrittr Matrix pbapply RcppCWB slam stringi tm xml2]; }; + polspline = derive2 { name="polspline"; version="1.1.20"; sha256="1dd1jwiaglkkhajzvqfkd1x5r3wzjlk5ww0yxzmns0s1kr74i4k9"; depends=[]; }; polyCub = derive2 { name="polyCub"; version="0.8.0"; sha256="1f63ikiz988hdihvgd5f2p897qfgv54ysgp2h8avmlc4cj6hgkgl"; depends=[sp]; }; polyMatrix = derive2 { name="polyMatrix"; version="0.9.16"; sha256="13amrjl0nsyz6d9c9xxgnlkhdiicy8rx27ds5k47r8x48386vz14"; depends=[Matrix polynom]; }; polyRAD = derive2 { name="polyRAD"; version="1.6"; sha256="1xvhjzryf35vrnf6iz82g14vbmbbm4g88il02ss5pmvsgxq70x5n"; depends=[fastmatch pcaMethods Rcpp stringi]; }; polySegratio = derive2 { name="polySegratio"; version="0.2-5"; sha256="0djw49mbhd7x6jr0f5qkb9akw3fw3ax4w9xv8iwa5f65q5gbxpdf"; depends=[gdata]; }; polySegratioMM = derive2 { name="polySegratioMM"; version="0.6-4"; sha256="162xj52566kaxgfk7c14170xx07isyjmqb9skvhrdg7sz20lc3l1"; depends=[coda gtools lattice polySegratio]; }; - polyaAeppli = derive2 { name="polyaAeppli"; version="2.0"; sha256="0kyz3ap92xz7aqyviyrpggfmicy1gybrx7y19djsmixcwz53zqch"; depends=[]; }; + polyaAeppli = derive2 { name="polyaAeppli"; version="2.0.2"; sha256="1rn1bryxxzsgi85kw4glmk10z61pqyxj79ngdl81b67vrw23fpxw"; depends=[]; }; polyapost = derive2 { name="polyapost"; version="1.7"; sha256="1inq3b8qq17w5zx2lrkrxjzb7drfajsp4qgy0194971m6x2j4cfx"; depends=[boot rcdd]; }; polyclip = derive2 { name="polyclip"; version="1.10-0"; sha256="0jyk4maqiblvj095jd59dr76kbniyli3v3xvy0a72ljszq6vrnkl"; depends=[]; }; polycor = derive2 { name="polycor"; version="0.8-1"; sha256="0285rvx8238qp8dix0jq0cqq7ks8h6cjwsscbc7dx4n9nph56pzh"; depends=[admisc Matrix mvtnorm]; }; polyfreqs = derive2 { name="polyfreqs"; version="1.0.2"; sha256="13859vbpys5yj1qiapyzv9wlvi6x6k0rm335bsi1v07ch3x2bh3b"; depends=[Rcpp]; }; polylabelr = derive2 { name="polylabelr"; version="0.2.0"; sha256="01b2v0l5g8nxwbd6nwqv8ahypgh6gfhd4qabg75brlj7z1iyfzf2"; depends=[Rcpp]; }; polymapR = derive2 { name="polymapR"; version="1.1.2"; sha256="0pgwyw6d7myx0ds5dmfwzrnmvzsm1gkpz9qc241isr9d4cj1dinn"; depends=[doParallel foreach igraph knitr MDSMap]; }; - polynom = derive2 { name="polynom"; version="1.4-0"; sha256="1pflscwc0qzdf0y60j7s0dkglgmz18xajywfbn6s263idyr8idy5"; depends=[]; }; + polynom = derive2 { name="polynom"; version="1.4-1"; sha256="0y4j07syjwpnq5w6a1d90z6h1hjzijmm42pq0f8jk2vcn5xxn7mw"; depends=[]; }; polypharmacy = derive2 { name="polypharmacy"; version="1.0.0"; sha256="1rimhy7z5xglkxfp3yh4vqm5g075n8g09nl4a8nxxf6cyl504gcv"; depends=[data_table doParallel foreach itertools lubridate stringr]; }; polypoly = derive2 { name="polypoly"; version="0.0.2"; sha256="00c1hrnf575awvh0rlsnf6nkgi9p3fnqhd1knamkgb4icwi5s46d"; depends=[ggplot2 reshape2 rlang tibble]; }; polyqtlR = derive2 { name="polyqtlR"; version="0.0.9"; sha256="0j879bvks6ldx53yfmac94p5n4p79pyq29ljdzbvajmxq5b57vf8"; depends=[abind doParallel foreach Hmisc knitr nlme RColorBrewer Rcpp RcppArmadillo reshape2]; }; @@ -14475,23 +14145,21 @@ in with self; { pomdp = derive2 { name="pomdp"; version="1.0.1"; sha256="1nrww68lfczfjbcvbj6rc3llqmwl3mfg6cip09vy726yyqw2d6jb"; depends=[igraph pomdpSolve]; }; pomdpSolve = derive2 { name="pomdpSolve"; version="1.0.0"; sha256="0iqpp1y8gz3ihifgln7b5xmwjrvripmkkwg6mr4938yqv7103mz1"; depends=[]; }; pomodoro = derive2 { name="pomodoro"; version="3.8.0"; sha256="1y7a6097jlrrgqkxhb43n5nahf4m814inhmkm1495w0k5q1zmraf"; depends=[caret gbm ipred pROC randomForest tibble]; }; - pomp = derive2 { name="pomp"; version="4.1"; sha256="1yv29iqzzqdfr34z98x0l8j3s3c45jhaqvb83njv996g11wxbkw4"; depends=[coda deSolve digest magrittr mvtnorm plyr reshape2]; }; + pomp = derive2 { name="pomp"; version="4.2"; sha256="10f6iw5mjwr11g3k90b7jfiykaqw59zpf22cbww7id9frzl3sj8z"; depends=[coda deSolve digest magrittr mvtnorm plyr reshape2]; }; pompom = derive2 { name="pompom"; version="0.2.1"; sha256="09jy4lrb2p71yk604ndfhqfz6znlc3bq72k42f0d1i1a8g3by8h6"; depends=[ggplot2 lavaan qgraph reshape2]; }; pooh = derive2 { name="pooh"; version="0.3-2"; sha256="0qwa5j91aypasvsf4xcfbl6lz7llawdr38jiflzmfak2ad72rv7j"; depends=[]; }; pool = derive2 { name="pool"; version="0.1.6"; sha256="1qfraam1rc2r4mn7yhhfv8lhhc4dzgq0v1y97n4h2z3mgxn5zgnd"; depends=[DBI later R6]; }; poolVIM = derive2 { name="poolVIM"; version="1.0.0"; sha256="19yw6pp5l3jmla4wjbvpjq132f645yks49pzsdv123f3qfr8f0m6"; depends=[EmpiricalBrownsMethod Hmisc ranger]; }; - poolfstat = derive2 { name="poolfstat"; version="2.0.0"; sha256="0bwihx9ql0sdmhm160r6vkmph88ms7zamzg7fi93mlx0h7i49phs"; depends=[ape DiagrammeR doParallel foreach Matrix nnls progress Rcpp RcppProgress Ryacas zoo]; }; + poolfstat = derive2 { name="poolfstat"; version="2.1.1"; sha256="0m5bb5ak18rfqz6z2qz5ylhmfmc7ahkmy20qgiaw7nh0yzjbs0i3"; depends=[ape DiagrammeR doParallel foreach Matrix nnls progress Rcpp RcppProgress Ryacas zoo]; }; pooling = derive2 { name="pooling"; version="1.1.2"; sha256="19mrzax3k35fhgjpnlrigf0nscsdl3xb7k82s5q472k4bcz7ya5b"; depends=[cubature data_table dplyr dvmisc ggplot2 ggrepel mvtnorm numDeriv]; }; poolr = derive2 { name="poolr"; version="1.1-1"; sha256="1y8bish2s96b42xsld0x1nrjz9dzqhdr2w95vdpfymq7mg05d1ry"; depends=[mathjaxr]; }; poorman = derive2 { name="poorman"; version="0.2.5"; sha256="05h7rjgri0b5a1jd0388p7lqvvg0y8z6g42f9bxc80jg1z730axr"; depends=[]; }; pop = derive2 { name="pop"; version="0.1"; sha256="0hbxdrkasb69x7ipddvyrzl5vvc7dd6rzj1vy7v3chg3rzgq89cj"; depends=[igraph MASS]; }; - pop_lion = derive2 { name="pop.lion"; version="1.0"; sha256="00si6jvm9whl7p0j21bfkqm79wxxflk9dg3171hjlvz5dxq6ypga"; depends=[abind]; }; + pop_lion = derive2 { name="pop.lion"; version="1.0.1"; sha256="1rj95wwcxvsfd1smd21717y9c0672a8vnpnbdsa63pxbzdxc4kaj"; depends=[abind testthat]; }; pop_wolf = derive2 { name="pop.wolf"; version="1.0"; sha256="113l9skpggjxjpwxibfp611z2gnjikfqh6kmj6in52sn9q4yqv83"; depends=[abind]; }; popEpi = derive2 { name="popEpi"; version="0.4.9"; sha256="1a79n3rry85qa52cn7zbhwbsyjgw7b72l97pw3p9sf2lgvacvxr1"; depends=[data_table Epi survival]; }; - popKorn = derive2 { name="popKorn"; version="0.3-0"; sha256="1zcl6ms7ghbcjyjgfg35h37ma8nspg15rk2ik82yalqlzxjf7kxw"; depends=[boot]; }; popPCR = derive2 { name="popPCR"; version="0.1.1.1"; sha256="03ppgjmdp3rivlgqs7aq082j4rzndf9fw5aq8mzci7fvjkj7whc4"; depends=[mvtnorm]; }; popPyramid = derive2 { name="popPyramid"; version="0.1.1"; sha256="1fvq63d0pjhpzyf6pb2v5w9wy0pskiv2n07jipg98bgyiih1w584"; depends=[dplyr ggplot2 tibble]; }; - popRF = derive2 { name="popRF"; version="1.0.0"; sha256="0w3w1ffyy5b8glviib7ryjqzhmfp5aw6am3z8qpvis6l745p7vgh"; depends=[doParallel foreach gdalUtils plyr quantregForest randomForest raster]; }; popReconstruct = derive2 { name="popReconstruct"; version="1.0-6"; sha256="0nmf93dy2qf7z9mafpy99ry53aapbxlismn7drn732r8gvravapx"; depends=[coda]; }; popbayes = derive2 { name="popbayes"; version="1.1"; sha256="04vzz214lrdkzgj8yksb8r81h1mgnbq6pz3r7c115cy4dn0f2m1f"; depends=[R2jags usethis]; }; popbio = derive2 { name="popbio"; version="2.7"; sha256="02dbb2sinn1n8a9dg8lvf35sc8hb14c90mjymz2gk64xdysf0m2j"; depends=[]; }; @@ -14509,7 +14177,7 @@ in with self; { portes = derive2 { name="portes"; version="5.0"; sha256="1iarvgz23979lipqyyvh8h0nd978p1nzbbjf020q11yqpl863502"; depends=[forecast]; }; portfolio = derive2 { name="portfolio"; version="0.5-2"; sha256="13w8gyaphg0qspjl6d0jh0jf3wvz4agy8vzkriba0k59qhdbi52f"; depends=[lattice nlme]; }; portfolio_optimization = derive2 { name="portfolio.optimization"; version="1.0-0"; sha256="1rdhwffsjc1pa1qq7rqy6dwk8yrcblkmijz94p2w7sf2v4jmwxxr"; depends=[magrittr MASS modopt_matlab xts]; }; - portfolioBacktest = derive2 { name="portfolioBacktest"; version="0.3.1"; sha256="0ycc1jqr27zmv4mwkf168i0v8wh5ga6cw6gp5rrz78zbr4gjaaiz"; depends=[digest evaluate ggplot2 pbapply PerformanceAnalytics quadprog quantmod R_utils rlang xts zoo]; }; + portfolioBacktest = derive2 { name="portfolioBacktest"; version="0.4.1"; sha256="1qf7bbf3frivp0q55h3fj9ki2igaa6djpg3zv1x6hh53nl25dvbb"; depends=[digest evaluate ggplot2 pbapply PerformanceAnalytics quadprog quantmod R_utils rlang xts zoo]; }; portsort = derive2 { name="portsort"; version="0.1.0"; sha256="0swl39dn7lzwvps18bva4l64a441gkf6lbwcwrhlf93f1ardvxji"; depends=[xts zoo]; }; postGGIR = derive2 { name="postGGIR"; version="2.4.0.2"; sha256="1jxmvgzq4hv7sy2zcs8jicp0223mhv3mywhxbay2nv3bl0h4xfgs"; depends=[abind accelerometry ActCR ActFrag cosinor cosinor2 denseFLMM dplyr GGIR ineq kableExtra minpack_lm refund survival tidyr xlsx zoo]; }; postGIStools = derive2 { name="postGIStools"; version="0.2.4"; sha256="04d6iqnk7j2lgv1h5c94j6y89jk75pmv26sxa51s5iwkjq7rchym"; depends=[DBI jsonlite rgdal rgeos RPostgreSQL sp stringr]; }; @@ -14529,7 +14197,6 @@ in with self; { powdR = derive2 { name="powdR"; version="1.3.0"; sha256="1bkx43xd46gzgiphknqyz2nyvviia0xkn4h8z4k2dwcfq92iwsbw"; depends=[baseline DT factoextra FactoMineR ggplot2 ggpubr nnls plotly plyr reshape rxylib shiny shinyWidgets tidyr]; }; powdist = derive2 { name="powdist"; version="0.1.4"; sha256="1my88ag5q9hwkn2wy79jl9008gpvg0bsrnyc81gkdfi7pjh2mp1z"; depends=[gamlss_dist normalp rmutil]; }; poweRlaw = derive2 { name="poweRlaw"; version="0.70.6"; sha256="14d1myxllvm1grnfiszzzxaiqpb2jpmsi19wq70r8r2wki293h7g"; depends=[pracma]; }; - powerAnalysis = derive2 { name="powerAnalysis"; version="0.2.1"; sha256="0cma4v402n6wcb2gy9g1ymydzh8vimy9nfrrn8xhnjsf7x6jh215"; depends=[]; }; powerCompRisk = derive2 { name="powerCompRisk"; version="1.0.1"; sha256="11xprjn9hzi8gxrsi7wivwgchg9h2apgxa63fp466ngjfy5ybxf4"; depends=[mvtnorm]; }; powerEQTL = derive2 { name="powerEQTL"; version="0.3.4"; sha256="124mwkjf5m19znn7zdnncdc3klgqyid08kvihk0gws2y9bw0m1zs"; depends=[GLMMadaptive nlme]; }; powerGWASinteraction = derive2 { name="powerGWASinteraction"; version="1.1.3"; sha256="1i8gfsk9qzx54yn661i4x9k7n7b6r1jd808wv1hcq7870mzyb27k"; depends=[mvtnorm pwr]; }; @@ -14539,7 +14206,7 @@ in with self; { powerSurvEpi = derive2 { name="powerSurvEpi"; version="0.1.3"; sha256="1p1fw4jq4rxc273hmycxf4bkqm6zmfw0jdy2s65jy10q37r53ial"; depends=[pracma survival]; }; powerbydesign = derive2 { name="powerbydesign"; version="1.0.5"; sha256="006m127rc49bshgljd5d3ii6sfx24ndn2690ixj0vnqm2dp3zjnw"; depends=[gdata ggplot2 lme4 MASS plyr reshape2 stringr]; }; powerjoin = derive2 { name="powerjoin"; version="0.0.1"; sha256="0hnk573jrpmr5k0yhfq74wksrz6ri5g21zf5853fslcxyjys1v8q"; depends=[cli dplyr generics glue lifecycle magrittr purrr rlang tibble tidyr tidyselect vctrs]; }; - powerly = derive2 { name="powerly"; version="1.7.2"; sha256="104wp8cbwzlb6il614aacq608rir3yv18rwjqxljxi597nyy004v"; depends=[bootnet ggplot2 osqp patchwork progress qgraph quadprog R6 rlang splines2]; }; + powerly = derive2 { name="powerly"; version="1.7.4"; sha256="0f6ax1rzkaffpyp43v01ymnnabnzhl9y9zqzllfq384rx0m22bns"; depends=[bootnet ggplot2 mvtnorm osqp patchwork progress qgraph quadprog R6 rlang splines2]; }; powerpkg = derive2 { name="powerpkg"; version="1.5"; sha256="0mbk2fda2fvyp1h5lk5b1fg398xybbjv0z6kdx7w7xj345misf7l"; depends=[]; }; powerplus = derive2 { name="powerplus"; version="3.1"; sha256="0ayp6x34hkzgris4j3zbbs0r23n81bhww3wgfyy630ri4sk6brrn"; depends=[complexplus expm MASS Matrix phonTools]; }; ppcSpatial = derive2 { name="ppcSpatial"; version="0.2.0"; sha256="1gi57zngc42wcrihg29nn7qa3gaq105ckp76qmczkldshlpd7x4r"; depends=[dplyr ggplot2 htmltools htmlwidgets leaflet magrittr PakPC2017 rgdal scales shiny tidyr tmap]; }; @@ -14583,14 +14250,14 @@ in with self; { prediction = derive2 { name="prediction"; version="0.3.14"; sha256="0awlq5lxfia6m2b91w73rksp93rbwv5gwqb36wbji4rgq41rzbrx"; depends=[data_table]; }; predictionInterval = derive2 { name="predictionInterval"; version="1.0.0"; sha256="029hc57cblfcbqckrghf95l2rkn7acgb4yr36da01bx8bmpww0bn"; depends=[ggplot2 MASS MBESS pbapply]; }; predictmeans = derive2 { name="predictmeans"; version="1.0.6"; sha256="1mg37vd5nlfvv3mx6hrdmxj0aavm9wy1j70117hp4sasvlvsccdi"; depends=[ggplot2 lme4 lmeInfo Matrix nlme pbkrtest plyr]; }; - predictoR = derive2 { name="predictoR"; version="2.0.5"; sha256="0h0dn8xwl0i1z95frk37zmivjrvadl5g0skirfavpk9fd8s0fvg6"; depends=[colourpicker config DT echarts4r glmnet golem htmltools rlang rpart rpart_plot shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs traineR xgboost xtable]; }; + predictoR = derive2 { name="predictoR"; version="2.0.7"; sha256="01ixa8ahfdx2dnxsjzkrv09wzpis641d846b4pbhlykgdwz8mhqc"; depends=[colourpicker config DT echarts4r glmnet golem htmltools rlang rpart rpart_plot shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs traineR xgboost xtable]; }; predictrace = derive2 { name="predictrace"; version="2.0.0"; sha256="1bk1l9gai4hyck72h81znsm1dzqwm5wddbz0bm9g5igs6zkar2ka"; depends=[dplyr]; }; - predieval = derive2 { name="predieval"; version="0.1.0"; sha256="1883dv3sdrf0dy55k5mlaaycr73xr86ly23x58rci2xhm3g4lpy7"; depends=[ggplot2 Hmisc MASS Matching]; }; - predint = derive2 { name="predint"; version="1.0.0"; sha256="043nsjvn88dhwvp5snbhmh64m8iy22ws4l474mbkm3rb488i9is9"; depends=[dplyr lme4]; }; + predieval = derive2 { name="predieval"; version="0.1.1"; sha256="096zfb94iixza0lfzr4p21gkcs9hl7h0d5jhbzdi3hhyz80zymrj"; depends=[ggplot2 Hmisc MASS Matching]; }; + predint = derive2 { name="predint"; version="1.1.0"; sha256="1w0kjjnbkrb71ldxw8gaj38ggfywvkc40nbfkv85p7anshzwp6za"; depends=[lme4]; }; predkmeans = derive2 { name="predkmeans"; version="0.1.1"; sha256="0352c50zlyzn8fczrkinayllj9jp978njjl7dazzkzypx0p20va5"; depends=[e1071 maxLik mgcv Rcpp RcppArmadillo]; }; predtools = derive2 { name="predtools"; version="0.0.2"; sha256="1bp0pvpd6s190q9kylvkcfh61jblbsla4d7rmnqv2rhza71mdfkj"; depends=[dplyr ggplot2 magrittr pROC RConics Rcpp]; }; predtoolsTS = derive2 { name="predtoolsTS"; version="0.1.1"; sha256="0f9fapw9yjdzj6pwcskbyfwjsvg09ahn20vrv4bgi0dx8am291rl"; depends=[caret forecast Metrics tseries TSPred]; }; - prefeR = derive2 { name="prefeR"; version="0.1.1"; sha256="1wgbwbmghsnc2cargwndda0xhcdswvzd0nkjq5g895kl8zcwgpyf"; depends=[entropy mcmc]; }; + prefeR = derive2 { name="prefeR"; version="0.1.3"; sha256="0n9ns715f274bcr3mbh7yjyvx3ajz949f7yyyq38f54cs2anwwrd"; depends=[entropy mcmc]; }; preferably = derive2 { name="preferably"; version="0.4"; sha256="1ccf9jza2721gc3rkw66ip0nddwa25l5nmz89qcg6qxf37d4k217"; depends=[knitr pkgdown rmarkdown]; }; preference = derive2 { name="preference"; version="1.1.6"; sha256="12gpiwd69ik4r2l67fvad0jmp78w919nhly4drxhfiizl3mw4jdn"; depends=[ggplot2 tidyr]; }; prefmod = derive2 { name="prefmod"; version="0.8-34"; sha256="1fkqp75w3im6b0l4sfs1yr2id8ffp2xbpb6lkgnv833cri787d5x"; depends=[colorspace gnm]; }; @@ -14614,9 +14281,9 @@ in with self; { prettycode = derive2 { name="prettycode"; version="1.1.0"; sha256="1ifh9h73szc23p1ii77z0r68n1gghndqqdm07wd7gxsg5pppp1sg"; depends=[crayon]; }; prettydoc = derive2 { name="prettydoc"; version="0.4.1"; sha256="0aa89jnqhz0l69inrgm1f1riq5bm3ksb8wjl8d4x2f320adsd50h"; depends=[rmarkdown]; }; prettyglm = derive2 { name="prettyglm"; version="0.1.0"; sha256="1qxfiynry2fhmdrqkn7hf2llx18gdi8an3crkx0s116yp3dlv5xl"; depends=[broom car dplyr forcats kableExtra knitr plotly stringr tibble tidycat tidyr tidyselect vip]; }; - prettymapr = derive2 { name="prettymapr"; version="0.2.2"; sha256="151jp0l728krmxcyzwjh01mvd1zhqijq0nsgjaqsh0q8n3jmndi0"; depends=[digest httr plyr rjson]; }; + prettymapr = derive2 { name="prettymapr"; version="0.2.3"; sha256="0kld9hkz9kj74rx5vx0i7gn082rrpmm1p19c7fga9rvjbbraw03f"; depends=[digest httr plyr rjson]; }; prettyunits = derive2 { name="prettyunits"; version="1.1.1"; sha256="1ibmzgknw5896q2i6r59jz2izblxwgb29ivvjzx50pkd1jl9l6cs"; depends=[]; }; - prevR = derive2 { name="prevR"; version="3.4.1"; sha256="02qfyc5j7rgvwl7a5pr1l41jmgjxxsrc674xfm08hcydwda5clq1"; depends=[directlabels fields foreign GenKern ggplot2 gstat maptools rgdal sp]; }; + prevR = derive2 { name="prevR"; version="4.0.0"; sha256="11biwj4qhynsqxgibgcgiprk5bs9ym9sja14lj6m8s43lyi6jyjb"; depends=[directlabels fields foreign ggplot2 gstat KernSmooth maptools rgdal sp]; }; prevalence = derive2 { name="prevalence"; version="0.4.0"; sha256="0vnmglxj1p66sgkw4ffc4wgn0w4s281fk2yifx5cn4svwijv30q0"; depends=[coda rjags]; }; prevederer = derive2 { name="prevederer"; version="0.0.1"; sha256="0vkx9nrlgp36xbl95lrb5sb5yivxlcw4yvbs8hgbm31kh0vbz32f"; depends=[httr]; }; previsionio = derive2 { name="previsionio"; version="11.7.0"; sha256="08hrklr3ngphdhp50lkz6ls9nn1bzdvs6xj583spsw4vm7j44yfr"; depends=[data_table futile_logger httr jsonlite magrittr Metrics plotly XML]; }; @@ -14626,6 +14293,7 @@ in with self; { pricesensitivitymeter = derive2 { name="pricesensitivitymeter"; version="1.2.2"; sha256="0clbc1p809rjgqilv548ck7pfbyajkp2i47vxx8yrrdgkx824gpn"; depends=[ggplot2 rlang survey]; }; prider = derive2 { name="prider"; version="1.0.4"; sha256="0sinaav8vwdd9aqgpnclah6kyw0r7afr39kz1ms9w8r6sya62q5g"; depends=[blaster dplyr gplots magrittr purrr Rcpp stringr tibble tidyr]; }; prim = derive2 { name="prim"; version="1.0.20"; sha256="0z07ddpz6r3sbi5141n9a0snzcc26rdlxiivfnacs8zavs1sk73x"; depends=[plot3D scales]; }; + primate = derive2 { name="primate"; version="0.2.0"; sha256="0agrz57xvk8azvb8af299l0g0iwamxy0l0m5y41rlsi03szszlii"; depends=[caroline]; }; primePCA = derive2 { name="primePCA"; version="1.2"; sha256="0w3w50x17q7gwji19m6dx5vq46h8p62alf3axd10mycl609jlbcb"; depends=[MASS Matrix softImpute]; }; primefactr = derive2 { name="primefactr"; version="0.1.1"; sha256="11hi75jwjxrl9p5m8yjwjb20pc9y9vkhi8sjrnisdq2hm53m483w"; depends=[]; }; primer = derive2 { name="primer"; version="1.2.0"; sha256="0qs4bzh80a6058v3s25z0w64wqpscgcciqbyqdifixl51z2qadf4"; depends=[deSolve ggplot2 tidyr]; }; @@ -14648,10 +14316,7 @@ in with self; { prnsamplr = derive2 { name="prnsamplr"; version="0.2.0"; sha256="18apbfcxmdmcf5qx8ws0hwgkiwkn20k1p4j5l362qwgxl1r3spvb"; depends=[]; }; pro = derive2 { name="pro"; version="0.1.1"; sha256="0f0iliq7bhf313hi0jbwavljic4laxfc0n3gac5y6hzm39gvvgag"; depends=[]; }; proPubBills = derive2 { name="proPubBills"; version="0.1"; sha256="1fpn9x31jjahdyk0f30mbb3ijj4dsghrq9q94r04pjsgr2jw23zx"; depends=[dplyr httr stringr]; }; - prob = derive2 { name="prob"; version="1.0-1"; sha256="05qcrsl790hn7p3ap4zj5i1b1sf674wvvrh42lyb7a0nsc09iq9n"; depends=[combinat fAsianOptions]; }; - probFDA = derive2 { name="probFDA"; version="1.0.1"; sha256="093k50kyady54rkrz0n9x9z98z5ws36phlj42j25yip7pzhfd6sv"; depends=[MASS]; }; probably = derive2 { name="probably"; version="0.0.6"; sha256="0g7d6mw4nj6lynbpaa4qbnyzpwgw1bwl44b7zxm6x1wal6p679ga"; depends=[dplyr generics rlang tidyselect vctrs yardstick]; }; - probemod = derive2 { name="probemod"; version="0.2.1"; sha256="1cgjr03amssc9rng8ky4w3abhhijj0d2byzm118dfdjzrgmnrf9g"; depends=[]; }; probout = derive2 { name="probout"; version="1.1.2"; sha256="1x7q878xzw1b1c6jfx856akxzcxrwanv67jji2ifkcdx2hgmgvpx"; depends=[FNN MASS mclust]; }; proccalibrad = derive2 { name="proccalibrad"; version="0.14"; sha256="0vr55rpcqh9wvy3bklssrimp42x85w3sanjgshfij657v68vmx46"; depends=[]; }; proceduralnames = derive2 { name="proceduralnames"; version="0.2.1"; sha256="0c8yx4yz62aa80v7ildsacxp2vav3skgffb90kn65nz4wryddq37"; depends=[]; }; @@ -14674,20 +14339,19 @@ in with self; { profileModel = derive2 { name="profileModel"; version="0.6.1"; sha256="01m5nb8cmq0aq555pxk2a99182si65hhmn68yn9nal2j3zl2bp4i"; depends=[]; }; profileR = derive2 { name="profileR"; version="0.3-5"; sha256="0fgc7585a7194c67irafjnx8g2j6mn3qhcfn76c6dh28clp20qp9"; depends=[ggplot2 lavaan RColorBrewer reshape]; }; profmem = derive2 { name="profmem"; version="0.6.0"; sha256="0gg6ja0ifwn9jj42rw1gnyil55sl9r2y5rjb6yjcvqwd5arajp3l"; depends=[]; }; - profoc = derive2 { name="profoc"; version="0.9.2"; sha256="1fygf5hn8wqbv4xpg4cqxfa1a887bhjx2y5iv84rfvzsb6h9ac7r"; depends=[abind Matrix Rcpp RcppArmadillo RcppProgress splines2]; }; + profoc = derive2 { name="profoc"; version="0.9.3"; sha256="0p83gvm7xhnwfmrn2fr31rz84sllws92rpmhjvxfcc6ylsp0hj0n"; depends=[abind Matrix Rcpp RcppArmadillo RcppProgress splines2]; }; profr = derive2 { name="profr"; version="0.3.3"; sha256="00bv1q0qn46nz4zjfs0l2yfh3hk71rajlp2rrlwg442z11k79ap9"; depends=[plyr stringr]; }; proftools = derive2 { name="proftools"; version="0.99-3"; sha256="095pxyyv6k818qwcjygbz1h24k0xkqi1agns8cqh2m5g64aynd70"; depends=[]; }; profvis = derive2 { name="profvis"; version="0.3.7"; sha256="1f86m426pcf90l29hf4hkirzf8f38dihk52bxbdq2gvrrdili5s3"; depends=[htmlwidgets stringr]; }; progenyClust = derive2 { name="progenyClust"; version="1.2"; sha256="0azp5pvk316s8xbawcqwqfd80fxb4xn8hc6aq87xwksc6fhwp94l"; depends=[Hmisc]; }; - prognosticROC = derive2 { name="prognosticROC"; version="0.7"; sha256="0lscsyll41hpfzihdavygdzqw9xxjp48dmy4i17qsx5h01jl1h4i"; depends=[survival]; }; progress = derive2 { name="progress"; version="1.2.2"; sha256="0dgzb362641aqm8xd88iqa8jmpdm43xs0aba0d5kk6fvapnxi95l"; depends=[crayon hms prettyunits R6]; }; progressr = derive2 { name="progressr"; version="0.10.0"; sha256="1p5s35rzh28n2id2lipgyqmh3wzib66m7x0pz9028y8cql8xr5ac"; depends=[digest]; }; proj4 = derive2 { name="proj4"; version="1.0-11"; sha256="07fil52jswbg2h807cd82m2wlm5j2fb891ifri9ms037099qdwf5"; depends=[]; }; projections = derive2 { name="projections"; version="0.5.4"; sha256="1c7fm2f3fx0905afw3nrbv6vv0a0awpml1rl2kaxnijjgqcxa6dg"; depends=[ggplot2 incidence]; }; projects = derive2 { name="projects"; version="2.1.3"; sha256="0ljrhswr5sfq051x0aicl9yvwakw9d9drgrmcz9d8qhgw1if0mky"; depends=[dplyr fs lubridate magrittr purrr readr rlang rstudioapi sessioninfo stringr tibble vctrs zip]; }; projmgr = derive2 { name="projmgr"; version="0.1.0"; sha256="1iysxcl6awvp7zbm04zyq4d9659fcz3sy711jnycsxhsk8hsvmc2"; depends=[gh magrittr]; }; - projpred = derive2 { name="projpred"; version="2.1.1"; sha256="170pskvcsyk22xl4q8mklx8nw29miqzb42wajcab7bki8ap1ix46"; depends=[dplyr gamm4 ggplot2 lme4 loo magrittr mgcv mvtnorm Rcpp RcppArmadillo rlang rstantools]; }; - prome = derive2 { name="prome"; version="0.0.0.8"; sha256="1c9jzpapjyfhpxvjw59p7ch99la00c7nhmvdmsxc4fwi0wcj9pb1"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; + projpred = derive2 { name="projpred"; version="2.1.2"; sha256="1c6gnmknd3vb0fb5h6gd372dk27nzif90b4c1snql49wacg6b2m8"; depends=[dplyr gamm4 ggplot2 lme4 loo magrittr mgcv mvtnorm Rcpp RcppArmadillo rlang rstantools]; }; + prome = derive2 { name="prome"; version="1.5.6.70"; sha256="0hhrrw06jd3qsq9ch8k5cv4p510kp2xkyd8dh6l7zw056cnjmac0"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; promethee123 = derive2 { name="promethee123"; version="0.1.0"; sha256="0s1wkcrvm32dpqg9ahn10kni1xv3ll7akqz4y6yn1d36km81bf21"; depends=[cowplot ggplot2]; }; promises = derive2 { name="promises"; version="1.2.0.1"; sha256="1dy4cbqw17awh4q8m7cy3anaj0n9iynabfzflb1g94cyj0bq4fld"; depends=[later magrittr R6 Rcpp rlang]; }; promote = derive2 { name="promote"; version="1.1.1"; sha256="1cdz4xqinyzpbbgkxxd4f86n1h8zj88vp5z6w01cxd5ykyjf5411"; depends=[httr jsonlite stringr]; }; @@ -14699,23 +14363,20 @@ in with self; { propagate = derive2 { name="propagate"; version="1.0-6"; sha256="17jinz1jramlsf87i7vyn2qp82rc1dacljfaxxplrk3crhw3bhs7"; depends=[ff MASS minpack_lm Rcpp tmvtnorm]; }; properties = derive2 { name="properties"; version="0.0-9"; sha256="1zd66cg31yd53rqsc0cwxhlpfn7kvc67qdh3vyj9qib8kwxaw1zl"; depends=[]; }; prophet = derive2 { name="prophet"; version="1.0"; sha256="06mryavky9xj54ig4scqjgpx7i56nwhs53g0zqsbs9f6qxja7gll"; depends=[BH dplyr dygraphs extraDistr ggplot2 lubridate Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tidyr xts]; }; - proportion = derive2 { name="proportion"; version="2.0.0"; sha256="0a71f6hz6blb7550m9x0di84vp51yjhnn952301rwlrh3axf6dbr"; depends=[ggplot2 TeachingDemos]; }; propr = derive2 { name="propr"; version="4.2.6"; sha256="16ghgzpwz6q9zlaa0pc8wqv0wpz81c75n7zwjyr1lv9y19qwlkfg"; depends=[fastcluster ggplot2 igraph Rcpp]; }; prospectr = derive2 { name="prospectr"; version="0.2.4"; sha256="0hxsm0k5f9gydc9i5952dy3viknai5bi1irkzdvxvcp10wl4piic"; depends=[foreach iterators lifecycle mathjaxr Rcpp RcppArmadillo]; }; protViz = derive2 { name="protViz"; version="0.7.3"; sha256="0f6jwzcqi0w37hvg3i5dlk0c3anpkqh54ibf94vaf17r8sykr4nw"; depends=[Rcpp]; }; protag = derive2 { name="protag"; version="1.0.0"; sha256="1iaw2w1d7hdvlg5vplpqc49wq08dgmm0ifvp2v0ggqb8invvdnw8"; depends=[dplyr ggplot2 RColorBrewer]; }; protein8k = derive2 { name="protein8k"; version="0.0.1"; sha256="11qj4sadhcsp1kk5kjmvzj2jnd3srsm5mp0q9h9khp1ps6dk35yw"; depends=[dplyr ggplot2 gridExtra lattice magick pryr rjson rlang shiny]; }; - proteomicdesign = derive2 { name="proteomicdesign"; version="2.0"; sha256="01s47pgwxy4xx10f3qmbfv59gbaj0qw017kpkpsn33s8w7ad63r0"; depends=[MASS]; }; proteomics = derive2 { name="proteomics"; version="0.2"; sha256="01cd4sb79gcx8gbzl624scvjbwhgcsca1wdvvfkhsv7jfwdd2ry2"; depends=[foreach ggplot2 plyr reshape2]; }; proteus = derive2 { name="proteus"; version="1.0.0"; sha256="0kasp1mmhzh8rkvxxcq44wcn9fg6q85wr3albxwi0cav0kkxhkzh"; depends=[abind actuar bizdays dplyr fANCOVA ggplot2 imputeTS lubridate modeest moments narray purrr readr scales stringr tictoc torch VGAM]; }; proto = derive2 { name="proto"; version="1.0.0"; sha256="1l843p8vckjckdhgv37ngv47fga5jzy0n00pmipvp05nnaixk54j"; depends=[]; }; - protoclass = derive2 { name="protoclass"; version="1.0"; sha256="17d2m6r1shgb47v8mwdg1a7f5h29m5l7f5m0nsmv0xc90s9cpvk8"; depends=[class]; }; protoclust = derive2 { name="protoclust"; version="1.6.4"; sha256="0cbl9jxdc2j4z5viczl70zcd9z83qlipvkqi5f2bpypyvi2s0xs1"; depends=[]; }; protolite = derive2 { name="protolite"; version="2.1.1"; sha256="0g1r3lzmvx1w44qzqzdvxfn21zmz11srlp6cr76kd7pd5wzjv82p"; depends=[jsonlite Rcpp]; }; proton = derive2 { name="proton"; version="1.0"; sha256="1mgaw54is8l6ac1rf8s70rj7kv9xgsfdrlvjz01ggfwg7c6pyr3s"; depends=[digest]; }; prototest = derive2 { name="prototest"; version="1.2"; sha256="07g58hq2qdpczqhjsv6dq1bya9rs958r103n91icw5yc19bvyhi2"; depends=[glmnet intervals MASS Rcpp RcppArmadillo]; }; protr = derive2 { name="protr"; version="1.6-2"; sha256="13vgiqkqqq1w2yj5f6i6scag0mr189zmisyvi6fgaw8g9dgxpxan"; depends=[]; }; - protti = derive2 { name="protti"; version="0.2.2"; sha256="11g04c7yscvxqixjslyiq7nx1l1rq8ari3mzaiw3afb4y87hp4x5"; depends=[curl data_table dplyr forcats ggplot2 ggrepel httr janitor lifecycle magrittr plotly progress purrr readr rlang stringr tibble tidyr]; }; + protti = derive2 { name="protti"; version="0.3.0"; sha256="032p0ih95kr1b8di9p0w3i60v78rpv9qjyhm7hb108ykzmmbjvrc"; depends=[curl data_table dplyr forcats ggplot2 ggrepel httr janitor lifecycle magrittr plotly progress purrr readr rlang stringr tibble tidyr]; }; proustr = derive2 { name="proustr"; version="0.4.0"; sha256="1qp4v4vb1qh137qn7zi1d2g999z17kq6kpyxy9355mj8c49iy8pn"; depends=[attempt rlang SnowballC stringr tidyr tokenizers]; }; provDebugR = derive2 { name="provDebugR"; version="1.0.1"; sha256="0ynz5m1gkaj1wks5l71r3iz7npf3mz0r04jsa8zwg670zsv2x7rf"; depends=[httr jsonlite provGraphR provParseR textutils]; }; provExplainR = derive2 { name="provExplainR"; version="1.1"; sha256="1jgxmpzgigpbdqh3r8gy6h0akv11ssl494h2jscdyb8zpjmc92fg"; depends=[diffobj digest dplyr provParseR stringr]; }; @@ -14732,17 +14393,16 @@ in with self; { prrd = derive2 { name="prrd"; version="0.0.5"; sha256="0ig3k1l2md6hzb5asv277ylg0k9a1rkcrbs8d8h4f07pxykhmivf"; depends=[config crayon data_table DBI liteq RSQLite]; }; prt = derive2 { name="prt"; version="0.1.4"; sha256="0adbznxacdfqd9hvp5x45vckh6vxlz2fvhqdqikmfy99k9gzcd4c"; depends=[assertthat backports cli crayon data_table fansi fst pillar rlang tibble vctrs]; }; pryr = derive2 { name="pryr"; version="0.1.5"; sha256="02vp1y7zhv22id43j5c0gdcgn9171dyypqp8rqrlc3w5a7n565kv"; depends=[codetools lobstr Rcpp stringr]; }; - ps = derive2 { name="ps"; version="1.6.0"; sha256="0cdzjqgap108whhsilxllg12m2d05pgksryhrz5bq608bvf7vbc9"; depends=[]; }; + ps = derive2 { name="ps"; version="1.7.0"; sha256="1qaj9gyz7q09aadlnj5al53k2pa4axmzjsbndf5r0b51qqrcy842"; depends=[]; }; psData = derive2 { name="psData"; version="0.2.2"; sha256="013hb6lk9rm2w08m5jbw90ndrcd4wyy2h125jx07c9bs60wh4mp4"; depends=[countrycode DataCombine reshape2 rio xlsx]; }; psSubpathway = derive2 { name="psSubpathway"; version="0.1.1"; sha256="1jzymhh1dy5w735fppqza7ilspsvyidkrdpq2yd3j5xfjckzfh5w"; depends=[GSVA igraph mpmi pheatmap]; }; psbcGroup = derive2 { name="psbcGroup"; version="1.5"; sha256="01q02lsjjj14b8si9pj12a5cvyq74lb9444vpwpxkbnsznx10bsy"; depends=[LearnBayes mvtnorm SuppDists survival]; }; psborrow = derive2 { name="psborrow"; version="0.1.0"; sha256="1swkwi65zdsl8q12191lj2vhwbhkhb302zh6rmhcf0bg9cj0xpj5"; depends=[data_table doParallel dplyr foreach futile_logger ggplot2 MatchIt matrixcalc mvtnorm rjags survival tidyr]; }; pscl = derive2 { name="pscl"; version="1.5.5"; sha256="0vzf5wazs92bhqhqd66v3vwmbfmnh67gb2466g1xxawim649nk05"; depends=[MASS]; }; - pscore = derive2 { name="pscore"; version="0.1-2"; sha256="1sfkxs2kv8lq87j3q9ci7j38c7gzfkp2l36lwcdhiidr2nls2x0c"; depends=[ggplot2 lavaan reshape2]; }; + pscore = derive2 { name="pscore"; version="0.4.0"; sha256="0flzqr9x0z2mjnbm5cjm8hqndkbv2yp11agkx89mbaafsg0hmjn1"; depends=[ggplot2 JWileymisc lavaan reshape2]; }; psd = derive2 { name="psd"; version="2.1.1"; sha256="1c9kq5g2p4iy1jdc9fhfs1v0hcnc8cbrpvafdpy3l4n9m66hahky"; depends=[RColorBrewer Rcpp RcppArmadillo]; }; psda = derive2 { name="psda"; version="1.4.0"; sha256="0if42szf0gkgdl7d02x43i0fdb6hp47j918vx06aw7qcw6a8j3k2"; depends=[ggplot2 plyr raster rgeos sp]; }; psdr = derive2 { name="psdr"; version="1.0.1"; sha256="02ypgi1gxnp0mn9p1w2j34ypnpbkrwp9i0ma0i7657zddcfnf391"; depends=[devtools ggplot2 qpdf]; }; - pse = derive2 { name="pse"; version="0.4.7"; sha256="0kigfzsvx3gw7jwym4f19dydwwarwxgmha7hpy54gg0zzi4k9icl"; depends=[boot Hmisc]; }; pseudo = derive2 { name="pseudo"; version="1.4.3"; sha256="0ccf3gz2g7g5y4acpj2qnb39hrghhdganizlddg6rx7al869fffs"; depends=[geepack KMsurv]; }; pseudorank = derive2 { name="pseudorank"; version="1.0.1"; sha256="1hjcvl38di1digkqg7nysd7bkljz1v7y54z2rz10fyk9lyp9mpmy"; depends=[doBy Rcpp]; }; pseval = derive2 { name="pseval"; version="1.3.1"; sha256="1jgnv1l9adhwrmkmp6wkzz7jf7w1hyqy47ajr29l21p4g037py45"; depends=[survival]; }; @@ -14750,30 +14410,30 @@ in with self; { psgp = derive2 { name="psgp"; version="0.3-19"; sha256="0yaf69zk4zkpgx5zyksdxb2g4az0ci8v6r23phzcis9fd21y70ds"; depends=[automap doParallel foreach gstat intamap Rcpp RcppArmadillo rgdal sp]; }; psica = derive2 { name="psica"; version="1.0.2"; sha256="1cnrd1p8ikv0hl97jwypw8np1ypa0d8k2mizwd1clkv7inbb264g"; depends=[BayesTree gridBase party partykit randomForest Rdpack rpart]; }; psidR = derive2 { name="psidR"; version="2.1"; sha256="06rsi6ai58yggf73hjaidjhlgc09jjk76a4drvvgfs3v0qm296mm"; depends=[data_table foreign futile_logger openxlsx RCurl SAScii]; }; - pso = derive2 { name="pso"; version="1.0.3"; sha256="0alar695c6kc1rsvwipsrvlxc93f3sy9l0yhp0mggyqgxkkvy406"; depends=[]; }; + pso = derive2 { name="pso"; version="1.0.4"; sha256="0dq02pv86iwxpvd8wfbryxfsxqrrw4991iim60nyh8mn02gflkmi"; depends=[]; }; psoptim = derive2 { name="psoptim"; version="1.0"; sha256="1yziabkd3h05cfl5jy5l8ji2y3w21acvxsq3inxyh0iwyr8qdkkl"; depends=[]; }; psp = derive2 { name="psp"; version="0.1"; sha256="0ls8nqfddl9yqsz6binjf5smg3vbs5r65dqv92zn6hmb51akf7q5"; depends=[]; }; - pspearman = derive2 { name="pspearman"; version="0.3-0"; sha256="1l5mqga7b5nvm6v9gbl1xsspdqsjqyhhdn4gc4qlz6ld7fqfq6cx"; depends=[]; }; + pspatreg = derive2 { name="pspatreg"; version="1.0.2"; sha256="12474khz49fjy5hmd8xvl7pfvw4sb423xwpzn90gj201d1cga1kz"; depends=[AmesHousing dplyr fields ggplot2 MASS Matrix MBA minqa numDeriv plm Rdpack sf spatialreg spdep stringr]; }; + pspearman = derive2 { name="pspearman"; version="0.3-1"; sha256="09l3knwaj4xs9dfz1xcj4mbynd4w1vxcgmzfqxz97czzbf7ingwh"; depends=[]; }; pspline = derive2 { name="pspline"; version="1.0-19"; sha256="0h7y9l64knx291ms5mlc65dl3ljzgmrfzdqk1rd7iy8x7wcvymds"; depends=[]; }; pspline_inference = derive2 { name="pspline.inference"; version="1.0.4"; sha256="1ijz642igm27xg3928w9ffvykai26aar5awbcilrjbkm6fk7yd4w"; depends=[assertthat dplyr magrittr mgcv plotrix plyr reshape2 rlang]; }; psqn = derive2 { name="psqn"; version="0.3.1"; sha256="05nzyapilhzwjgc3lizg424i28mshmwirpggg79hssjqmqraflpj"; depends=[Matrix Rcpp RcppEigen testthat]; }; psr = derive2 { name="psr"; version="0.1.0"; sha256="0lnszaspilk88hmdjbgid7nh0zrpc57mymchva4kqc3cpckw247a"; depends=[dplyr psych tidyr]; }; - psre = derive2 { name="psre"; version="0.1.0"; sha256="01g0p5sfhahjs2q13dcaqk816ch3niv1gxw6fpivih3n92r5yygj"; depends=[boot car cowplot DAMisc dplyr fANCOVA ggplot2 ggrepel lawstat magrittr MASS metap mgcv multcomp normwhn_test nortest rlang sm tibble tidyr]; }; + psre = derive2 { name="psre"; version="0.1.1"; sha256="1vm2by62nsmg5pabvgjmj3m2km97sb5lmghzbs3bhd6a2hy3jaix"; depends=[boot car cowplot DAMisc dplyr fANCOVA ggplot2 ggrepel lawstat magrittr MASS metap mgcv multcomp nortest rlang sm tibble tidyr]; }; psrwe = derive2 { name="psrwe"; version="3.1"; sha256="0gmsh0294jzazxw4ss6jys92dckgfh4fqirfcdi3pzr6a7nnam8s"; depends=[BH cowplot dplyr ggplot2 randomForest Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders survival]; }; - pssm = derive2 { name="pssm"; version="1.1"; sha256="0r3d1mzc7bcz238lqq4y518400m2dqm5a1fb9gkfiari1ax099lv"; depends=[abind MASS MHadaptive numDeriv]; }; pssmooth = derive2 { name="pssmooth"; version="1.0.3"; sha256="08syh52gjaf72kq01v6b5dljmwi29nvmjmkkgmjb97zsi15z1wd3"; depends=[chngpt MASS np osDesign]; }; pstest = derive2 { name="pstest"; version="0.1.3.900"; sha256="1rhd4vgqpr9yq0pc3xql3nfgl30v20ldywapp9n967ky2dja4k0z"; depends=[glmx MASS]; }; - psy = derive2 { name="psy"; version="1.1"; sha256="027whr670w65pf8f7x0vfk9wmadl6nn2idyi6z971069lf01wdlk"; depends=[]; }; + psy = derive2 { name="psy"; version="1.2"; sha256="1cps0lc31l2zchlmrmbwhyz9zjxkl4rcjja838cnqci7plcav28l"; depends=[]; }; psycModel = derive2 { name="psycModel"; version="0.3.2"; sha256="0yb826sc8xajbai7x6p0ryvas3jizn3n8j0y7blykb4vhvcabq3x"; depends=[dplyr ggplot2 glue insight lavaan lifecycle lme4 lmerTest parameters patchwork performance psych rlang stringr tibble tidyr]; }; - psych = derive2 { name="psych"; version="2.2.3"; sha256="0fi7gcaxcb1mdyfpgjm03sxz3qgp1s0hnrgx8pyswni5skb903pn"; depends=[lattice mnormt nlme]; }; + psych = derive2 { name="psych"; version="2.2.5"; sha256="08f3byqwabgkqcxwpjbsxdcjkdg012iraqinw0fzskfl1srzkhyw"; depends=[lattice mnormt nlme]; }; psychReport = derive2 { name="psychReport"; version="3.0.1"; sha256="0mii4n24dfc8rh6jz81sil2wn9ml6vdaqn5m8caf3glv9k0v812c"; depends=[broom cli dplyr ez xtable]; }; - psychTools = derive2 { name="psychTools"; version="2.2.3"; sha256="055wj4vx3aybraf7b9picpylawim2681bcgb6ad85gs07s1xin87"; depends=[foreign psych]; }; - psychmeta = derive2 { name="psychmeta"; version="2.6.2"; sha256="0yacf2d2svb95a95cxa37szxpags156kwmn5knpfyn4hgbwp390g"; depends=[boot curl dplyr ggplot2 mathjaxr metafor progress purrr rlang tibble tidyr]; }; + psychTools = derive2 { name="psychTools"; version="2.2.5"; sha256="0pcskz16g8k9n05xj85dx3zskn2l51m5g40qgwk3pd89hqj5552r"; depends=[foreign psych]; }; + psychmeta = derive2 { name="psychmeta"; version="2.6.3"; sha256="1jd17gz099n4bv9xb69zl4n2bjs21n7ls9y6h2ysj1bawazrgc3q"; depends=[boot curl dplyr ggplot2 mathjaxr metafor progress purrr rlang tibble tidyr]; }; psycho = derive2 { name="psycho"; version="0.6.1"; sha256="1a3qccr9jwrbwkfbrvckkhhk9qygrc5n4mq80kpzx0zy5bylxi0a"; depends=[bayestestR dplyr effectsize ggplot2 insight parameters scales stringr]; }; psychomix = derive2 { name="psychomix"; version="1.1-8"; sha256="0lfhfcmrk65gkr1yp317b515vmadbcf0vjcnc76d07yp6yfkz5qw"; depends=[flexmix Formula lattice modeltools psychotools]; }; psychonetrics = derive2 { name="psychonetrics"; version="0.10"; sha256="09jv7ladas5yfj51nv323z2hgyamd6q40vi07wfypimpi3h4szyh"; depends=[abind combinat corpcor dplyr GA glasso IsingSampler lavaan magrittr Matrix mgcv numDeriv optimx pbapply pbv psych qgraph Rcpp RcppArmadillo rlang roptim tidyr VCA]; }; - psychotools = derive2 { name="psychotools"; version="0.7-0"; sha256="11gybrf9d90nbqfm76qr2z9y4bn498j1csg5zir38k5inpw5bk3x"; depends=[]; }; - psychotree = derive2 { name="psychotree"; version="0.15-4"; sha256="0ni8ajl0hzl4spm71c0myhv16an00j0brb4gyzg2fgkqs6rm34l2"; depends=[Formula partykit psychotools]; }; + psychotools = derive2 { name="psychotools"; version="0.7-1"; sha256="03bbyb7svrm6xxcqvam4mhdgc2icp46g2ih66qk8w0n7yjj1dwrg"; depends=[]; }; + psychotree = derive2 { name="psychotree"; version="0.16-0"; sha256="1mk747m37yhhgvwikc88s0m86rgwbzkkv797jwxfpk8fsd79xqc8"; depends=[Formula partykit psychotools]; }; psychrolib = derive2 { name="psychrolib"; version="2.5.2"; sha256="0d43zhpl5ik90hqpdy62x7rwmxag3z1mdrn3cl1whr04rmymhk20"; depends=[Rcpp]; }; psychtm = derive2 { name="psychtm"; version="2021.1.0"; sha256="1qx3ks23wyi7c53p05jq2w18qz0kym0j43japz9sgj6zyh0c5649"; depends=[coda label_switching Rcpp RcppArmadillo RcppProgress rlang tibble]; }; psymetadata = derive2 { name="psymetadata"; version="1.0.1"; sha256="1m1b1fhiv31hjc7iy20c065w25mgzmsbp0vlh2vlzrlqmfw0qpwv"; depends=[Rdpack]; }; @@ -14821,7 +14481,7 @@ in with self; { pvclust = derive2 { name="pvclust"; version="2.2-0"; sha256="0082icm54k2yq60k06qpr92a626k39j2jr0046lva4ylmhxqb4kq"; depends=[]; }; pvcurveanalysis = derive2 { name="pvcurveanalysis"; version="1.0.0"; sha256="0rj1afldz07krp8qiszbcpmf5vz5ngvxvflww9f7zyj6kj8lll8d"; depends=[ggplot2]; }; pvldcurve = derive2 { name="pvldcurve"; version="1.2.6"; sha256="0vyrrgbj955jkir25svq59h8darvaf33m985mcy1dx6836zqwgap"; depends=[ggplot2]; }; - pvsR = derive2 { name="pvsR"; version="0.3"; sha256="1ijmqlcsc8z0aphdd3j37ci8yqsy50wnr2fwn7h8fxbyd12ax2nj"; depends=[httr nnet XML]; }; + pwlmm = derive2 { name="pwlmm"; version="1.1.0"; sha256="04cpzhylqs342y9qkvas2av43khrgdi9nf4n0p07lfiwn2s5a728"; depends=[lme4 Matrix Rcpp RcppEigen]; }; pwr = derive2 { name="pwr"; version="1.3-0"; sha256="1kfzy73v3z6ipc3kdfkcjrp4b4p5k54nwk796gqi36srm93hgc2v"; depends=[]; }; pwr2 = derive2 { name="pwr2"; version="1.0"; sha256="0zfv7z5yymw310r1sqm8ivsc2pv6dgk2k4b1axmm92gsaj53cn7p"; depends=[]; }; pwr2ppl = derive2 { name="pwr2ppl"; version="0.4.0"; sha256="03gk36g8rbkf0cj47pkx8m30n2vncmq8x1qk2389vz4crplmc6pr"; depends=[afex broom car dplyr ez lavaan lmPerm lmtest MASS MBESS nlme phia pls quantreg semTools tidyr]; }; @@ -14836,14 +14496,13 @@ in with self; { pxweb = derive2 { name="pxweb"; version="0.13.1"; sha256="076747aj3rr8r3hn9lki66xl2flqylxqhqp9iyx120rjp9bfzmbr"; depends=[checkmate httr jsonlite]; }; pyMTurkR = derive2 { name="pyMTurkR"; version="1.1.5"; sha256="1b1cbvjbnvw2h8l3lbm0ma80zgpm212wzfhyyr6dr115k237xy89"; depends=[curl reticulate XML]; }; pycno = derive2 { name="pycno"; version="1.2"; sha256="0ha5css95xb98dq6qk98gnp1al32gy6w5fkz74255vs4hmkwfzw2"; depends=[maptools rgeos sp]; }; - pyinit = derive2 { name="pyinit"; version="1.1.2"; sha256="0i5l9rm8gkkabsqxkl0gvrpsbz7im0lk0axz1c0m0lq2vlrw9jsq"; depends=[robustbase]; }; + pyinit = derive2 { name="pyinit"; version="1.1.3"; sha256="0cbwip549d17ysbk4lrvn6a25vfjjnimjsd5myvnbvg8c9nq5ryn"; depends=[robustbase]; }; pylintR = derive2 { name="pylintR"; version="0.1.0"; sha256="00k9p3igdxhyx353gq8j9mnhrs9fh0j4q2iqa2ljfjdsdw1r2asr"; depends=[fansi htmlwidgets rstudioapi]; }; pyramid = derive2 { name="pyramid"; version="1.5"; sha256="0lakn9knmhqvhrp98sc3hhwd4bilpplxbr5j9bv8w6li0qd3d04a"; depends=[]; }; pysd2r = derive2 { name="pysd2r"; version="0.1.0"; sha256="1dqvgdxj6m683wkjyjhv685xnhl9328bm921zphm1i9p70fahs0n"; depends=[knitr reticulate tibble]; }; pzfx = derive2 { name="pzfx"; version="0.3.0"; sha256="0f8bvwnk44wq8j58rw80b9bclknrh4a3iqdl3p4y26q100cpisgr"; depends=[xml2]; }; qCBA = derive2 { name="qCBA"; version="0.5.1"; sha256="1r9khpmdxjcnlbx4ccg26vsyp3wdc06bvlx9yl9zm4kwfi68aj9y"; depends=[arc arules rJava]; }; qGaussian = derive2 { name="qGaussian"; version="0.1.8"; sha256="02xy35xg4swr1ldnsbywnz2h0ga1pbsivnj0aqmpll7kvwl9qz4c"; depends=[Rcpp robustbase zipfR]; }; - qLearn = derive2 { name="qLearn"; version="1.0"; sha256="1ilxmgazm8gjz8c1hhbp4fccibnvnalxrag8b0rn081zsqmhf094"; depends=[]; }; qMRI = derive2 { name="qMRI"; version="1.2"; sha256="10x59g8awxjib5j5mc1yd5wsibk3z6ki6zifxsg8azl0zblxbscf"; depends=[adimpro aws awsMethods oro_nifti stringr]; }; qacBase = derive2 { name="qacBase"; version="1.0.3"; sha256="0rmxmaaa162w1qrbkcm2fd2rnrp2kqjjh6mpszpv1lpfdaq7p4yq"; depends=[crayon dplyr ggcorrplot ggExtra ggplot2 haven multcompView patchwork PMCMRplus purrr rlang tidyr]; }; qad = derive2 { name="qad"; version="1.0.1"; sha256="0b6zpffyxqqp76xajv5sf1ylz8glnsd2ajj91ijdads21hxqfrnw"; depends=[copula cowplot data_table dplyr ggExtra ggplot2 Rcpp viridis]; }; @@ -14862,7 +14521,7 @@ in with self; { qcv = derive2 { name="qcv"; version="1.0"; sha256="0hf02l9c1cpzs02mfn9swfc8l635qsvh6xrhj21g19h5rxaf8jwg"; depends=[]; }; qdap = derive2 { name="qdap"; version="2.4.3"; sha256="1fadzq7afavxfhcd8q6xy3g8d7jwy24zz1da2ig9bd8vrk5zjmnx"; depends=[chron dplyr gender ggplot2 gridExtra igraph NLP openNLP openxlsx plotrix qdapDictionaries qdapRegex qdapTools RColorBrewer RCurl reshape2 scales stringdist tidyr tm venneuler wordcloud XML]; }; qdapDictionaries = derive2 { name="qdapDictionaries"; version="1.0.7"; sha256="0jdx7bxmvc4p41jb4fhaagg5jsbsi7gva870cmyia72li52grhyn"; depends=[]; }; - qdapRegex = derive2 { name="qdapRegex"; version="0.7.2"; sha256="1xa8q1way3gjadrjh3mv3xr4c6b4h16nd2c6lgl969difplpfz9p"; depends=[stringi]; }; + qdapRegex = derive2 { name="qdapRegex"; version="0.7.5"; sha256="1hdilycwrvi0q6cx7k8vg87bamm2xsafjkya5x4smxysm5k1r4qb"; depends=[stringi]; }; qdapTools = derive2 { name="qdapTools"; version="1.3.5"; sha256="09byvv39qmdcavlykpcvk248l2f7sw0pq64ynq2xffmnga3ji24c"; depends=[chron data_table RCurl XML]; }; qdm = derive2 { name="qdm"; version="0.1-0"; sha256="0cfxyy8s5zfb7867f9xv9scq9blq2qnw68x66m7y7nqlrrff5xdr"; depends=[]; }; qfasar = derive2 { name="qfasar"; version="1.2.1"; sha256="14370bmq4qx5j02va13wz52m2lgl4vb992p9587z9v2sxl1v4jjg"; depends=[Rsolnp]; }; @@ -14884,8 +14543,8 @@ in with self; { qmap = derive2 { name="qmap"; version="1.0-4"; sha256="02xvq1mw83gln7phacbi3vhkvb100crggbldv13mhwq3wjnmg5k2"; depends=[fitdistrplus]; }; qmd = derive2 { name="qmd"; version="1.0.0"; sha256="107z0frnr26qhsk6s930r4x4lqlfvf3m6wj6ppw11zxjsrsp0g5w"; depends=[qad]; }; qmethod = derive2 { name="qmethod"; version="1.8"; sha256="0wv6i48w15pmsd8y0c46r3152w4y7is2xmsy6d9sqys8rbmqk019"; depends=[digest GPArotation knitr psych rjson shiny xtable]; }; - qmix = derive2 { name="qmix"; version="0.1.2.0"; sha256="172lhvj7adphxq9gws2i9lysc9bj1wpk60f4hf2h5sisnli15v0x"; depends=[BH Formula Rcpp RcppEigen rstan StanHeaders]; }; - qmrparser = derive2 { name="qmrparser"; version="0.1.5"; sha256="0sl9n42j0dx9jqz5vv029ra6dyrg9v7mvdlya8ps3vyd6fjhwh0z"; depends=[]; }; + qmrparser = derive2 { name="qmrparser"; version="0.1.6"; sha256="0d17b64gzf5xlhc5z8qxjj759c1paiv8kxikk2r6ph6zfwvvxw0y"; depends=[]; }; + qoi = derive2 { name="qoi"; version="0.0.3"; sha256="16kan1r36850r57irfanl6q0m3krz8vwh1hyazr0jp98ia7hh0dx"; depends=[]; }; qpNCA = derive2 { name="qpNCA"; version="1.1.6"; sha256="1mlv9yc929w8ypfzhfplhjbxxj1qdx4v9gh6dr68lylvm9ahx032"; depends=[dplyr ggplot2 knitr magrittr tidyr]; }; qpcR = derive2 { name="qpcR"; version="1.4-1"; sha256="1r01q7jv3w59yx1gc0qw91rq7rvdhqsi8y57sqqkmwyqfw2x2vsv"; depends=[MASS Matrix minpack_lm rgl robustbase]; }; qpdf = derive2 { name="qpdf"; version="1.1"; sha256="03lnfncw8qd1fwfyqh1mjvnsjr3b63wxbah0wp5g7z7gba90dwbi"; depends=[askpass curl Rcpp]; }; @@ -14949,8 +14608,8 @@ in with self; { qualvar = derive2 { name="qualvar"; version="0.2.0"; sha256="1c7b7lcyq2l46sslk185r6xfh5fb35z9qihrhnh294sw1k52bffa"; depends=[]; }; qualypsoss = derive2 { name="qualypsoss"; version="1.0.0"; sha256="1pvf9b9yw8317wnh1x1jkmwl4cl0r9q7npfw0xzgbs8mfpl9j2ah"; depends=[doParallel foreach MASS mvtnorm]; }; quantCurves = derive2 { name="quantCurves"; version="1.0.0"; sha256="0z00agd4q157cjkc4gwyfw3kka043wcf5j7yzn8cqm281fqh1jny"; depends=[KernSmooth locpol np quantreg quantregGrowth]; }; - quantable = derive2 { name="quantable"; version="0.3.6"; sha256="15q4phc2j7aihl8f4qzpdwxcvshq2cfzkfcxc8k4qypsxk9a00sb"; depends=[caret dplyr e1071 ggplot2 ggrepel gplots Matrix plyr pROC RColorBrewer readr reshape2 rlang scales stringr tibble tidyr]; }; quantdates = derive2 { name="quantdates"; version="1.0"; sha256="1hyds8rwr1yg740aq4w5fqjrwdf3dl4phf8mj8qsgbb7i0wbbf3q"; depends=[lubridate]; }; + quantdr = derive2 { name="quantdr"; version="1.2.2"; sha256="0w6jdd6i4wxbk4fp44rmy32mwq9ng63zwamq8zpa1hlfbm5qh4s2"; depends=[dr KernSmooth mvtnorm quantreg]; }; quanteda = derive2 { name="quanteda"; version="3.2.1"; sha256="102wlx6481fskgdr5wv467n29f666q0qg9kjm0ivqfg9xsbvza12"; depends=[fastmatch magrittr Matrix Rcpp RcppArmadillo RcppParallel SnowballC stopwords stringi xml2 yaml]; }; quanteda_textmodels = derive2 { name="quanteda.textmodels"; version="0.9.4"; sha256="0r2nls93nriw97z0rmmpn2bb8c3jr571hv5slqj68p7ibr06rh1h"; depends=[glmnet LiblineaR Matrix quanteda Rcpp RcppArmadillo RcppParallel RSpectra SparseM stringi]; }; quanteda_textplots = derive2 { name="quanteda.textplots"; version="0.94.1"; sha256="0h17dp3p26fm4i60yi4ncijwc2lazklnls8q1v2vkk76726l67w4"; depends=[extrafont ggplot2 ggrepel igraph Matrix network quanteda RColorBrewer Rcpp sna stringi]; }; @@ -14960,9 +14619,9 @@ in with self; { quantilogram = derive2 { name="quantilogram"; version="2.2.1"; sha256="0gvr93d6jjixcrislym0mna2l3plqhl8adaqiagdvxg4y0adfmf0"; depends=[np quantreg SparseM]; }; quantities = derive2 { name="quantities"; version="0.1.6"; sha256="0kz95q8npiir8nadvfnpnnm9z5jg9mqk7b1fp6l0bj8asmjyw1l3"; depends=[errors Rcpp units]; }; quantkriging = derive2 { name="quantkriging"; version="0.1.0"; sha256="0v6kckgzhgsn3158sc06xszdhmk8sfny10j1qyppxsl2hk89n8jf"; depends=[ggplot2 hetGP Matrix reshape2]; }; - quantmod = derive2 { name="quantmod"; version="0.4.18"; sha256="0dbcrncv06iqcbkky95dd7l32xq0hhbnkb0kj8wwzym1jf748h5a"; depends=[curl TTR xts zoo]; }; + quantmod = derive2 { name="quantmod"; version="0.4.20"; sha256="154fqhw46kc7r08zsj5fsg97hg93phsli3z14xwmz22xb50xymzp"; depends=[curl TTR xts zoo]; }; quantoptr = derive2 { name="quantoptr"; version="0.1.3"; sha256="0f9vy9yhya4wpya8n345s6n7a5sb29chdkl5fz6dwa31lp1mvvj3"; depends=[quantreg Rdpack rgenoud stringr]; }; - quantreg = derive2 { name="quantreg"; version="5.88"; sha256="0grsha18zkiil0qnxc1d7kc3w26i6aaa4av9n9ahdm8yf59yah0r"; depends=[Matrix MatrixModels SparseM]; }; + quantreg = derive2 { name="quantreg"; version="5.93"; sha256="0fg5x6sa8mz2hh9nak0wajh4l6h03x216462vs94rgq0ln24kafl"; depends=[MASS Matrix MatrixModels SparseM survival]; }; quantreg_nonpar = derive2 { name="quantreg.nonpar"; version="1.0"; sha256="1f9120awnkwsgdiqg98lg7xs5l4y80930869x6k9q76595r5m92k"; depends=[fda mnormt quantreg Rearrangement]; }; quantregForest = derive2 { name="quantregForest"; version="1.3-7"; sha256="0lk7r02i6zpx9sdl2rp0r7fc3a84s8qhg49nh2x7k3vxwa095pjz"; depends=[randomForest RColorBrewer]; }; quantregGrowth = derive2 { name="quantregGrowth"; version="1.4-0"; sha256="0fw8kdgnlvb9c0xnankmzlpk9qnk52rqrrby32a02mz2f93ddh7k"; depends=[quantreg]; }; @@ -15002,20 +14661,20 @@ in with self; { r_jive = derive2 { name="r.jive"; version="2.4"; sha256="12zjzjjy1dwhr1gxb5029p5l3wjhwaysja4zf6insdnx1fd0ybxd"; depends=[abind gplots]; }; r_proxy = derive2 { name="r.proxy"; version="0.1.0"; sha256="0k7bcgp1d53ps6aalqz764v33mkamz5czdp72fc69zwrfb9rz63w"; depends=[curl jsonlite]; }; r02pro = derive2 { name="r02pro"; version="0.1"; sha256="1zciq86wpykvbd6zmh8b83dl4vpz53isi6hbbrz0h48sqb1g2006"; depends=[learnr]; }; - r2d2 = derive2 { name="r2d2"; version="1.0-0"; sha256="1zl0b36kx49ymfks8rm33hh0z460y3cz6189zqaf0kblg3a32nsi"; depends=[KernSmooth MASS sp]; }; + r2d2 = derive2 { name="r2d2"; version="1.0.1"; sha256="1956p9xr9as8v4673d6fsdyas3racfzh6a5pafqz56r8ai1ssbyq"; depends=[KernSmooth MASS sp]; }; r2d3 = derive2 { name="r2d3"; version="0.2.6"; sha256="15mphywsr0603ipbgzac65n1nj7m77fmw3ypc33p9ng4fllg035r"; depends=[htmltools htmlwidgets jsonlite rstudioapi]; }; r2dRue = derive2 { name="r2dRue"; version="1.0.4"; sha256="1apdq7zj5fhs349wm9g6y06nn33x24pg3gdp4z1frd18qlacf8z5"; depends=[matrixStats rgdal sp]; }; r2dictionary = derive2 { name="r2dictionary"; version="0.1"; sha256="0assylz2ih96l4jily76hp524h5xbnc27ln8yjvk9c4q88yr8xfy"; depends=[rstudioapi stringr]; }; - r2dii_analysis = derive2 { name="r2dii.analysis"; version="0.1.12"; sha256="1fnwq5x6mryiafblfn1pks1pf0kca64a9mx3ic9q5f466qjr3flp"; depends=[dplyr glue magrittr r2dii_data rlang tidyr tidyselect zoo]; }; - r2dii_data = derive2 { name="r2dii.data"; version="0.2.2"; sha256="01ycncjjk8s2mi085dzxvsp4g98y0jsz14v9l7cf0wrvsz506n5v"; depends=[]; }; - r2dii_match = derive2 { name="r2dii.match"; version="0.0.11"; sha256="01iwb2jhbx8xllzplw0vvqhq7xp9xn560gdv1xbshmr6aklgsgzg"; depends=[data_table dplyr glue magrittr purrr r2dii_data rlang stringdist stringi tibble tidyr tidyselect]; }; - r2dii_plot = derive2 { name="r2dii.plot"; version="0.2.0"; sha256="0df2grafjwpy9cd2lfgiy20rlhsrmr87miw9vxw8k12722iq9jms"; depends=[dplyr forcats ggplot2 ggrepel glue magrittr r2dii_data rlang scales]; }; + r2dii_analysis = derive2 { name="r2dii.analysis"; version="0.2.0"; sha256="1bd1byr7n488d0ig393vdg7mdg902hmhwaim6hcx31brqzz19kam"; depends=[dplyr glue lifecycle magrittr r2dii_data rlang tidyr tidyselect zoo]; }; + r2dii_data = derive2 { name="r2dii.data"; version="0.3.0"; sha256="15695r4i19bih8v75arfbzy99jhkyrfn3m1kbb5jgksa3avgcvl3"; depends=[lifecycle]; }; + r2dii_match = derive2 { name="r2dii.match"; version="0.1.0"; sha256="0gv4v2759kfxp9vvnrsx93yapjbqy5ff38p57d6wi49cgd0jlprh"; depends=[data_table dplyr glue lifecycle magrittr purrr r2dii_data rlang stringdist stringi tibble tidyr tidyselect]; }; + r2dii_plot = derive2 { name="r2dii.plot"; version="0.3.0"; sha256="0xfirb7xq199mxngjva535nqfdfl8ff26bmfdk141hg9fysfs00v"; depends=[dplyr forcats ggplot2 ggrepel glue lifecycle magrittr r2dii_data rlang scales stringr]; }; r2glmm = derive2 { name="r2glmm"; version="0.1.2"; sha256="0iim92blpa59vgz97c2pi05yhbjjmaffdbkbmk5kplfb2vmazgiy"; depends=[afex data_table dplyr ggplot2 gridExtra lmerTest MASS Matrix mgcv pbkrtest]; }; r2mlm = derive2 { name="r2mlm"; version="0.3.1"; sha256="0iiqn97mg4m3wrm7v1barbly2kr89ch8sg7lap26kwwir6f1jc1i"; depends=[broomExtra dplyr lme4 magrittr nlme rlang rockchalk stringr tidyselect]; }; r2pmml = derive2 { name="r2pmml"; version="0.26.0"; sha256="15npzyjd5n1zysffhcfp4c0wykk2nhwgs8j2x8fqyn9cv2l8abjk"; depends=[]; }; r2pptx = derive2 { name="r2pptx"; version="0.1.0"; sha256="12p3018b514kk1yxm1xyc0835j34zvpr1fz8k5rpiz30fbxjip58"; depends=[glue officer]; }; r2r = derive2 { name="r2r"; version="0.1.1"; sha256="0vp0ak88m3ssca8b8kxf9w6qkxsdy0qs6cngrr9gqvbrnx0gh9j6"; depends=[digest rlang]; }; - r2rtf = derive2 { name="r2rtf"; version="0.3.3"; sha256="1a6hbx9cjak2fv5khhq0k4j583qn24sbs5bykz86z530rbwbrc8y"; depends=[]; }; + r2rtf = derive2 { name="r2rtf"; version="0.3.4"; sha256="1mc2mcddrqayfyl3s9304cz5ncgyfh69ff8qwg3l1m03lkgx7jqc"; depends=[]; }; r2shortcode = derive2 { name="r2shortcode"; version="0.1"; sha256="03djy8m146k31xgvwcbrd1nzwj4wdlvvwzgviv80kskgr6ld9jrj"; depends=[magrittr stringr]; }; r2spss = derive2 { name="r2spss"; version="0.3.1"; sha256="0vc0sk80fsabj4ialfpygzbwdl4a263gqyrqlrf817hm95mvb9vh"; depends=[car ggplot2 scales]; }; r2sundials = derive2 { name="r2sundials"; version="5.0.0-10"; sha256="1hv5wq6lxrv57pszxky4xiwhjhjlzxa4fh0flrrmrrk89dygkx9v"; depends=[Rcpp RcppArmadillo rmumps]; }; @@ -15025,7 +14684,6 @@ in with self; { r4googleads = derive2 { name="r4googleads"; version="0.1.1"; sha256="1v7nfr6fk9q5dchf3ig4169kv0vx1jrbbsgkdgfhhc2mz3cqck16"; depends=[curl jsonlite]; }; r4lineups = derive2 { name="r4lineups"; version="0.1.1"; sha256="1p0dnrp21zx1l9lqx01jnq54d5ppb8siibv47i4gsp7c7db9ymxc"; depends=[boot dplyr ggplot2 ggrepel here magick magrittr pROC psych purrr]; }; r4ss = derive2 { name="r4ss"; version="1.36.1"; sha256="03xin7avdbg5ayrcdbw5rx9sh6ingjq2kv3405h01vqf1jhkfsxk"; depends=[coda corpcor gdata gplots gtools kableExtra pso truncnorm]; }; - r511 = derive2 { name="r511"; version="0.1.1"; sha256="1njsnjf0746cv6x7fznq4cg556fczqcfawwb869r3w9zv0zj1iy9"; depends=[assertthat dplyr httr tibble xml2]; }; r5r = derive2 { name="r5r"; version="0.7.0"; sha256="095db1bi06np8m4n3zprwnhazpa1r0jns86r24ddzdpm0ppdbga4"; depends=[checkmate curl data_table httr raster rJava sf sfheaders]; }; r6extended = derive2 { name="r6extended"; version="0.1.2"; sha256="1kq1j5rx57053mslj8jx1s0wjvhis7x3y264zw44q4k2x48q9wxs"; depends=[digest hellno magrittr R6]; }; r6methods = derive2 { name="r6methods"; version="0.1.0"; sha256="18q1qd7hkxbk0yilqdk17cp7qbl4c71jv10z732539wcmy8svb1v"; depends=[dplyr glue magrittr miniUI purrr rstudioapi shiny stringr]; }; @@ -15054,10 +14712,9 @@ in with self; { rDataPipeline = derive2 { name="rDataPipeline"; version="0.54.1"; sha256="0i0vb7gsjshh1wn0lksdma51xdyn6qw54j02cb0xmzcg896gl2p9"; depends=[assertthat cli configr dplyr git2r httr jsonlite openssl R6 rhdf5 semver usethis yaml]; }; rDecode = derive2 { name="rDecode"; version="0.1.0"; sha256="1d0rrhycw9anhvx6czz7axkzhzqprdgi9sqfglmc962zf1x3hmn2"; depends=[]; }; rDppDiversity = derive2 { name="rDppDiversity"; version="0.0.2"; sha256="0833v5wkamqipfxpsdxz040q6vlgg9qqpwiaivvh8ar5sci10v88"; depends=[Rcpp]; }; - rEDM = derive2 { name="rEDM"; version="1.10.3"; sha256="0ygjw7ci44bki98annci69mrzpp6ssgqg3sg6qpcipf90md72b2g"; depends=[Rcpp RcppThread]; }; + rEDM = derive2 { name="rEDM"; version="1.12.0"; sha256="0byawk2hzfi30ljzx7z6k7ypcs3ak8lpw4lxb65kl01ivvhbhdg0"; depends=[Rcpp RcppThread]; }; rEMM = derive2 { name="rEMM"; version="1.1.0"; sha256="18bpskhrafj0b5rnzisrsk5x5gifqn7dpawcsgdrg7rbnz7y1wzr"; depends=[cluster clusterGeneration igraph MASS proxy]; }; rENA = derive2 { name="rENA"; version="0.2.4"; sha256="0yfmdfw45azyzcy7rf5xsannrlranbxpgfsb52rl6vvd681p4r4x"; depends=[concatenate data_table doParallel foreach magrittr plotly R6 Rcpp RcppArmadillo scales]; }; - rFDSN = derive2 { name="rFDSN"; version="0.0.0"; sha256="1ffiqpdzy4ipy2aci22zkih4373ifkjkpvsrza8awhyf9fwqwdsl"; depends=[XML]; }; rFIA = derive2 { name="rFIA"; version="1.0.0"; sha256="13c50hn8fna9f5zwxp3nzpzvgv8aw5a5pxkpw6600yhmg1nmrwgp"; depends=[bit64 data_table dplyr dtplyr ggplot2 rlang sf stringr tidyr tidyselect]; }; rFSA = derive2 { name="rFSA"; version="0.9.6"; sha256="1fxd194iq8jnlsnj76mjq2f6db7ln641qwfsf5v63kx3qqhn8x5s"; depends=[hash rPref tibble tidyr]; }; rFerns = derive2 { name="rFerns"; version="5.0.0"; sha256="1yw3np5iamnr7f3nrd507dkyz76nxmzdpinwxncv87yw30g6gnkq"; depends=[]; }; @@ -15073,7 +14730,6 @@ in with self; { rIsing = derive2 { name="rIsing"; version="0.1.0"; sha256="1208lwfk9j8gghj8xf6i8v6s18h89ydqsd4jq3r88n403yzbzzck"; depends=[data_table Rcpp RcppEigen]; }; rJPSGCS = derive2 { name="rJPSGCS"; version="0.2-10"; sha256="0a00s10yp22fkvk67dkq43sbphcqla65x9j4qpv076bmdchn7arw"; depends=[chopsticks rJava]; }; rJava = derive2 { name="rJava"; version="1.0-6"; sha256="1ijqhvnb8ab38cp9pwdf7zq7xqqlm6x94gkrab2dd98p6d4x1472"; depends=[]; }; - rKIN = derive2 { name="rKIN"; version="0.1"; sha256="1j6fdi5h869q4d1hq6ha6qyhisa0zk2qmhjrc4ahl9991d680dyn"; depends=[ggplot2 maptools MASS rgeos sp]; }; rKOMICS = derive2 { name="rKOMICS"; version="1.1"; sha256="0zs7a75hgrj4ajbbxn0kmc2871rakyizhwdn7ryha8bgig4ld3cs"; depends=[ape circlize ComplexHeatmap dplyr factoextra FactoMineR ggplot2 ggpubr magrittr reshape2 stringr]; }; rKolada = derive2 { name="rKolada"; version="0.2.1"; sha256="1c1ci6dn3yqgp7qm1fih8dlq67dpbc1wlxhzcrzs0zzign47vgvd"; depends=[dplyr glue httr jsonlite magrittr purrr rlang stringr tibble tidyr urltools]; }; rLDCP = derive2 { name="rLDCP"; version="1.0.2"; sha256="0k7zc1xyqmcl7070hhpqw1d2k1ij6bd4wjym8cw263pds2n7nx21"; depends=[XML]; }; @@ -15110,7 +14766,7 @@ in with self; { rSPDE = derive2 { name="rSPDE"; version="1.1.1"; sha256="0zji1d292nr8bj149vdk0v48jcg6w56cbxr5xhfm7s5b999qrqxf"; depends=[Matrix]; }; rSQM = derive2 { name="rSQM"; version="1.3.14"; sha256="0m69n2pnfv2085dln6p149a5gw0gif9xk00xmad5s9j68hwjdmym"; depends=[dplyr EcoHydRology ggplot2 gsubfn mise ncdf4 qmap reshape2 stringr yaml zoo]; }; rStrava = derive2 { name="rStrava"; version="1.1.4"; sha256="00y400znkwyr6y33wiz0jikpa31a60hdcmsi9x3724zwjh28vynj"; depends=[bitops dplyr geosphere ggplot2 ggrepel googleway httpuv httr magrittr plyr purrr RCurl rvest tibble tidyr V8 XML xml2]; }; - rTG = derive2 { name="rTG"; version="1.0.0"; sha256="1v2wj2cv26hk5s7vm2l75lqgki28ivhkd0b8kspxw2c56cm82r70"; depends=[brnn dplyr ggplot2 knitr magrittr mgcv]; }; + rTG = derive2 { name="rTG"; version="1.0.1"; sha256="1wsas7wvyzbiw31iv0qazjmnxj7al84y5kpvglf1f0dd444y4hc0"; depends=[brnn dplyr ggplot2 knitr magrittr mgcv]; }; rTLS = derive2 { name="rTLS"; version="0.2.5.2"; sha256="10fkd8ylj9xwvgwnirjw4n6c4vl8y5x8q4mq2zmwlpjryknx82kv"; depends=[alphashape3d boot data_table doSNOW foreach Rcpp RcppArmadillo RcppHNSW RcppProgress rgeos rgl sp]; }; rTRNG = derive2 { name="rTRNG"; version="4.23.1-2"; sha256="0rba3dxy97r75mxfn8rxrk2081my79la2m5m9h5ms2z5px07llqd"; depends=[Rcpp RcppParallel]; }; rTableICC = derive2 { name="rTableICC"; version="1.0.7"; sha256="1z896675kmm9p5dnmcnsz2205ynf05laqcxvlc9y0g5i0x8rf8v6"; depends=[aster partitions]; }; @@ -15145,7 +14801,7 @@ in with self; { radsafer = derive2 { name="radsafer"; version="2.2.6"; sha256="0dmxdrmi8rvng69hsgqj60gw22daasxmy69z1xygd0w7vcsvn9aw"; depends=[dplyr ggplot2 ggthemes magrittr qpdf RadData readr rlang scatterplot3d stringr utf8]; }; rafalib = derive2 { name="rafalib"; version="1.0.0"; sha256="1dmxjl66bfdgrybhwyaa8d4i460liqcdw8b29a6w7shgksh29m0k"; depends=[RColorBrewer]; }; ragg = derive2 { name="ragg"; version="1.2.2"; sha256="1q43pwmljsqgrikkh2g1n7bpz9c8py5dnj44cfg3y2br7b4m2q9v"; depends=[systemfonts textshaping]; }; - rags2ridges = derive2 { name="rags2ridges"; version="2.2.5"; sha256="0aqfm8f58xrq81bd80parkwj28i6m0bxdpq6qp1iy3qyxsq5as64"; depends=[expm fdrtool ggplot2 graph gRbase Hmisc igraph RBGL Rcpp RcppArmadillo reshape RSpectra sfsmisc snowfall]; }; + rags2ridges = derive2 { name="rags2ridges"; version="2.2.6"; sha256="1bidnjykiqiz83x98gk2y3sxsskk9fiap6grr7fb7a7h9mjhq0lw"; depends=[expm fdrtool ggplot2 graph gRbase Hmisc igraph RBGL Rcpp RcppArmadillo reshape RSpectra sfsmisc snowfall]; }; ragt2ridges = derive2 { name="ragt2ridges"; version="0.3.4"; sha256="17i3z0p3a4dqa0bch5l1r830w5nlxhdg71y82jipp6cfiwli588z"; depends=[abind Biobase CGHbase expm fdrtool igraph MASS Matrix mvtnorm rags2ridges Rcpp RcppArmadillo]; }; ragtop = derive2 { name="ragtop"; version="1.1.1"; sha256="0vgc2q71g8ysccq19kbk9a4swxgd5qj91xm4bshfgdg5chxqnb50"; depends=[futile_logger limSolve]; }; rai = derive2 { name="rai"; version="1.0.0"; sha256="0qimfzchbrarkwmv3mxxbdgvqzk16sc8m1h140zm0cnfgr2pvi5p"; depends=[dplyr ggplot2 readr rlang]; }; @@ -15166,14 +14822,14 @@ in with self; { randNames = derive2 { name="randNames"; version="0.2.3"; sha256="0vhzg14yg4c9inzxin8prfzh6nhf8fvbi4hbn122fyqyp5d6f8zi"; depends=[httr jsonlite tibble]; }; randcorr = derive2 { name="randcorr"; version="1.0"; sha256="1hnr0wvbsmgql39wlj4z2qbqn0fdfwyihfl6xgrlzvs9vrmig5xx"; depends=[]; }; randgeo = derive2 { name="randgeo"; version="0.3.0"; sha256="14hlh9k66lcbf0xhnxx12rrnyl8awqcsm3csvxdz23s5wnm2ya5p"; depends=[]; }; - randnet = derive2 { name="randnet"; version="0.5"; sha256="131bkfzxjd3x02dj6wc2ilwpgymmm18apd4v1dd70ib4sibvir16"; depends=[AUC entropy irlba Matrix nnls poweRlaw pracma RSpectra]; }; rando = derive2 { name="rando"; version="0.2.0"; sha256="085g48yzwapxxfmm5bvkz0v7pmjwmakb7nl128550ppgc16wxkgb"; depends=[dplyr glue rlang tibble]; }; random = derive2 { name="random"; version="0.2.6"; sha256="0sdhagwjlhldb8hn6h4nd1sflzhwkapzybdlb8hzisy3w2ygjn9b"; depends=[curl]; }; random_polychor_pa = derive2 { name="random.polychor.pa"; version="1.1.4-4"; sha256="19yzpjidw5pbrqfa5ln5hgghv0mq3cwl92z2isq25yydfl6qsl6h"; depends=[boot MASS mvtnorm nFactors psych sfsmisc]; }; randomForest = derive2 { name="randomForest"; version="4.7-1"; sha256="04q6gb917md4yw837cf9vlx1q8ljl06jw7yhykzb6nl47w55jnkq"; depends=[]; }; randomForestExplainer = derive2 { name="randomForestExplainer"; version="0.10.1"; sha256="1ny8c3vn2zvdx12avwvlm4lp648jigkrkcvnhf5qmj8rh0w069v0"; depends=[data_table dplyr DT GGally ggplot2 ggrepel randomForest ranger reshape2 rmarkdown]; }; - randomForestSRC = derive2 { name="randomForestSRC"; version="3.0.2"; sha256="0zfmz1m2kad3ph67zkhvmalaavvyyif5mk9qlc1q2b17246975na"; depends=[data_tree DiagrammeR]; }; - randomLCA = derive2 { name="randomLCA"; version="1.1-1"; sha256="08flank5pmyh5ih63bfw5qaby3g8vfh8p36sjbmxfylicdydfjl7"; depends=[boot doParallel doRNG fastGHQuad foreach lattice Matrix Rfast]; }; + randomForestSRC = derive2 { name="randomForestSRC"; version="3.1.0"; sha256="1h25lisghsyl0v4fkca01db7642bx0nrf1klgrfcd1zabr3bv3x3"; depends=[data_tree DiagrammeR]; }; + randomGLM = derive2 { name="randomGLM"; version="1.10-1"; sha256="0557dpca39nj1451l28x4xxfr92cf48gy7crlfhnv4k91kglwcnz"; depends=[doParallel foreach geometry Hmisc MASS matrixStats survival]; }; + randomLCA = derive2 { name="randomLCA"; version="1.1-2"; sha256="1s0sk3a7ldiq6x46j3jyc4alhz9jr0925adkrazz93jfcavpdrps"; depends=[boot doParallel doRNG fastGHQuad foreach lattice Matrix Rfast]; }; randomNames = derive2 { name="randomNames"; version="1.5-0.0"; sha256="1lv1vqb4wgs0j1gqy84dpa30qsvbp6928zpshczpw87yf32k71vh"; depends=[crayon data_table toOrdinal]; }; randomUniformForest = derive2 { name="randomUniformForest"; version="1.1.5"; sha256="1amr3m7h5xcb8gahrr58233chsnx1naf9x5vpjy9p5ivh71xcxf7"; depends=[cluster doParallel foreach ggplot2 gtools iterators MASS pROC Rcpp]; }; randomcoloR = derive2 { name="randomcoloR"; version="1.1.0.1"; sha256="0rqh1zrdza12qq7475f77yvryhh4hj0pg25lb8ywrcljgaj53bnb"; depends=[cluster colorspace Rtsne scales stringr V8]; }; @@ -15206,9 +14862,7 @@ in with self; { rapportools = derive2 { name="rapportools"; version="1.1"; sha256="0qr86idng12g6hdd764j0wmli700v7rjhw7jdjxj0ka8xm5v7ymm"; depends=[MASS pander plyr reshape2]; }; rappsflyer = derive2 { name="rappsflyer"; version="0.2.0"; sha256="1n0h4iqnzb5xr531b6nvqsjx4mpsg1gp85av2b9gqg0wrbzzizm7"; depends=[dplyr httr lgr retry stringr tidyr]; }; rapsimng = derive2 { name="rapsimng"; version="0.3.0"; sha256="1zykznmb6qipkj8yxkf33vrvyqhsp0ajk34hnz7js1zvy5n8rd5l"; depends=[dplyr jsonlite magrittr rlang tibble tidyr]; }; - raptr = derive2 { name="raptr"; version="0.1.7"; sha256="1gm99nnvn3b9xz6216masv7ji8j8vrkprzprkba5y1h22gzwxd3n"; depends=[adehabitatHR assertthat BH boot doParallel ggplot2 hypervolume ks Matrix mvtnorm PBSmapping plyr RandomFields raster RColorBrewer Rcpp RcppEigen rgdal rgeos RgoogleMaps scales shape sp]; }; rare = derive2 { name="rare"; version="0.1.1"; sha256="0j78ilswiaxdp9107psiw8ibxncd7i81z2njhfqf0n7532pbvjss"; depends=[glmnet Matrix Rcpp RcppArmadillo]; }; - rareGE = derive2 { name="rareGE"; version="0.1"; sha256="0v3a2wns77q923ilddicqzg0108f8kmfdnsff1n65icin7cfzsny"; depends=[MASS nlme survey]; }; rareNMtests = derive2 { name="rareNMtests"; version="1.1"; sha256="13r2hipqsf8z9k48ha5bh53n3plw1whb7crpy8zqqkcac8444b2z"; depends=[vegan]; }; rarms = derive2 { name="rarms"; version="1.0.0"; sha256="11wjxd3pxvjv1j2nz26l8f0kykk9w6lf08izhivfngp63dk2akns"; depends=[jsonlite]; }; rasciidoc = derive2 { name="rasciidoc"; version="4.0.2"; sha256="1k3bh1bbjrzhmz2dz98qw8ad46jk7dx7srigp22valk5jz4ni7s5"; depends=[checkmate document fritools gert highr knitr reticulate]; }; @@ -15230,8 +14884,8 @@ in with self; { ratelimitr = derive2 { name="ratelimitr"; version="0.4.1"; sha256="06x759jxr5zcnvg9q120n5bpipkb16piw15kxrpk7i918mby889b"; depends=[assertthat]; }; ratematrix = derive2 { name="ratematrix"; version="1.2.3"; sha256="0bnwwkmjsxlv4qkkwq93d7nrqb7pyyd70ffpm98xsxfy1ygdxjqq"; depends=[ape coda corpcor ellipse geiger MASS mvMORPH phylolm Rcpp RcppArmadillo readr]; }; rater = derive2 { name="rater"; version="1.2.0"; sha256="1y4hhcnxdlw17w0ihv108p3rkwwdis7i7vc0rp7l6pfz7an8pw8r"; depends=[BH ggplot2 loo Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders]; }; - rateratio_test = derive2 { name="rateratio.test"; version="1.0-2"; sha256="1a2v12z2dr893ha80fhada1820z5ih53w4pnsss9r9xw3hi0m6k5"; depends=[]; }; - raters = derive2 { name="raters"; version="2.0.1"; sha256="16jnx6vv39k4niqkdlj4yhqx8qbrdi99bwzxjahsxr12ab5npbp1"; depends=[]; }; + rateratio_test = derive2 { name="rateratio.test"; version="1.1"; sha256="1vajhgawlwf99rb1w1im1njngbb5n37y7lah1l5vv9j5i3pha1y7"; depends=[]; }; + raters = derive2 { name="raters"; version="2.0.2"; sha256="0an1n6yvziv8y4imprydzs57nar7nkjxsh2xy17g2sa98nng9s40"; depends=[]; }; ratesci = derive2 { name="ratesci"; version="0.4-0"; sha256="1imraj95vcwz3i6r767zwckjqs1vp7bfww9d792l5nvwi5zyddp4"; depends=[]; }; rationalfun = derive2 { name="rationalfun"; version="0.1-1"; sha256="0xabnqgzl8qdc4x9547mmkr1rm78p3fysdvk6jhjdi8cp2p6kcjh"; depends=[polynom]; }; ratios = derive2 { name="ratios"; version="1.2.0"; sha256="16q9v2lhgklvdp3hi9x3afdldznfpwg775p80m2g5074q2dzjpgg"; depends=[data_table stringr]; }; @@ -15249,6 +14903,7 @@ in with self; { rayshader = derive2 { name="rayshader"; version="0.24.10"; sha256="1wdqbbk8f0vxha0awgfv4c8n7yndy2k1q6f3rkr3f5j84wwqfjbx"; depends=[doParallel foreach magrittr png progress raster rayimage Rcpp RcppArmadillo rgl scales terrainmeshr]; }; raytracing = derive2 { name="raytracing"; version="0.1.0"; sha256="052j053l4104pk7cbkkqrj3kkiip9lv2lf0xl2xsray62n6p07m4"; depends=[ncdf4 sf units]; }; rayvertex = derive2 { name="rayvertex"; version="0.3.3"; sha256="1xigdspf3jybk48i60141kjk34vig9drl7sdn1pi5zsh3pi4w5rx"; depends=[digest magrittr png rayimage Rcpp RcppThread spacefillr]; }; + rb3 = derive2 { name="rb3"; version="0.0.2"; sha256="1cch0m9ngg3a80p9cdcyz8xzas9izsqh1xq9616431avmf2zrky5"; depends=[ascii base64enc bizdays cli digest dplyr httr jsonlite proto purrr readr rlang rvest stringr yaml]; }; rbace = derive2 { name="rbace"; version="0.2.2"; sha256="04jcbrcp0l1v2q8hhwr5w72spdja8r0fw71v68kx39yigy7m1sgp"; depends=[crul data_table tibble xml2]; }; rbacon = derive2 { name="rbacon"; version="2.5.8"; sha256="10i3kbk8wssh2v7ry37bswf1wxsvg5nxdw4ap58fxcn7wsblzjrk"; depends=[coda IntCal Rcpp]; }; rbart = derive2 { name="rbart"; version="1.0"; sha256="1byfm1ycw9nfhdblqklyn8pxn6b9q5fa3inbgfpynqpsid97ig35"; depends=[Rcpp]; }; @@ -15262,7 +14917,7 @@ in with self; { rbhl = derive2 { name="rbhl"; version="0.9.2"; sha256="0rs1mmah4yyy5dgz1lvzslm4dk53x0wpiy3742z3hwr8p4agnkqi"; depends=[crul jsonlite plyr tibble xml2]; }; rbi = derive2 { name="rbi"; version="0.10.4"; sha256="0p0cvdzhb81drk5b9fb9jcnw5c02i7qfy7vwyyhk2b1vm9rkw681"; depends=[data_table ncdf4 processx reshape2]; }; rbi_helpers = derive2 { name="rbi.helpers"; version="0.3.2"; sha256="1inbf3kpl4y46m7v36akrr24112y4sd3d8yqia16i32wxf53wql5"; depends=[data_table lubridate Matrix rbi reshape2]; }; - rbibutils = derive2 { name="rbibutils"; version="2.2.7"; sha256="1iamdbww3hvxy0bbywc307kyhiczx0bvfhw7nngsm33balcng7kw"; depends=[]; }; + rbibutils = derive2 { name="rbibutils"; version="2.2.8"; sha256="0lnia2fk8zlvkkgnl7r7dyi1ip5vqlw448qrvqs2s14rpbpcvbpi"; depends=[]; }; rbin = derive2 { name="rbin"; version="0.2.0"; sha256="18g6s4m0yc1bzrymk8km553kcwi4vj16b6mxw2lmv48z7243iq87"; depends=[data_table ggplot2]; }; rbioacc = derive2 { name="rbioacc"; version="1.1-0"; sha256="0lmkfr0s90hi06llsa0v4jbcx0jd1dx3qq9h6kb67ws0q6h9y028"; depends=[BH GGally ggmcmc ggplot2 loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders stringr zoo]; }; rbioapi = derive2 { name="rbioapi"; version="0.7.6"; sha256="13wa5642pkndffydklaw81p3avqscw3m82qy65pmfyhlx6d7cj26"; depends=[httr jsonlite]; }; @@ -15276,6 +14931,7 @@ in with self; { rbmn = derive2 { name="rbmn"; version="0.9-5"; sha256="087i0snzfk5ng944pvy3cqnbib270p0sdmmxk9lp4ab6hi0f7618"; depends=[MASS]; }; rbokeh = derive2 { name="rbokeh"; version="0.5.2"; sha256="1h2fpzqf17pw9d09r1g1iyxsj5qma4fsk8vnar7f1z4fjyypvi6q"; depends=[digest gistr hexbin htmlwidgets jsonlite lazyeval magrittr maps pryr scales]; }; rbooster = derive2 { name="rbooster"; version="1.1.0"; sha256="0v524hjp3im94hbf6kbmi4xhqnak135mmpmq1sni1c97dqal2hqy"; depends=[earth Hmisc rpart]; }; + rbounds = derive2 { name="rbounds"; version="2.2"; sha256="0rp24s80fvf62il7prpyb90j8i8x1xy6k8jzn5prb88nnvspr2fi"; depends=[]; }; rbridge = derive2 { name="rbridge"; version="1.0.2"; sha256="0m4c61rdrhq1jw3rwq2ld29g5dchbk4sfpnq0wmwbvzhdjq76plc"; depends=[dplyr Matrix Rcpp RcppArmadillo]; }; rbscCI = derive2 { name="rbscCI"; version="0.1.0"; sha256="12r1f4yy5hx0sx1q77yzq3wxhbx8zgj9d1jfpa1hagvwcyd8bdxb"; depends=[BH Rcpp]; }; rbtc = derive2 { name="rbtc"; version="0.1-6"; sha256="1z5p1jn5b0hzwcbdpiwj224h45x01bbsgkskllir5j13l416561p"; depends=[gmp httr openssl rjson]; }; @@ -15285,7 +14941,6 @@ in with self; { rcDEA = derive2 { name="rcDEA"; version="1.0"; sha256="012l9l61p3mw38fk3y3rcfjjjj9ds5kb1v2cwfvad2il5w6s9smv"; depends=[Benchmarking np]; }; rcage = derive2 { name="rcage"; version="1.1"; sha256="0k6x543c0v31yx6b7xiyq7pb3a68sxc7ap8l61h3lp840la6gidp"; depends=[ClustGeo ff fields ggplot2 gridExtra LaplacesDemon MASS Matrix pracma raster rgeos rlang sf sp]; }; rcaiman = derive2 { name="rcaiman"; version="0.1.1"; sha256="0p6qn23mj90fj81j5gc7s8v1kihfqnv3r03xh9d8rax4jd2dni92"; depends=[colorspace magrittr pracma raster Rdpack rgdal sp spatial testthat]; }; - rcane = derive2 { name="rcane"; version="1.0"; sha256="0p2mgkq6fh0n289n2h19c52lnqxl05wvpmd6nwvgnjqwa4wwpa7r"; depends=[]; }; rcanvec = derive2 { name="rcanvec"; version="0.2.1"; sha256="0gsk2cfiysxjw2lrnpl2l524lvhh9nhnyyh79n8p7vykyqj711yn"; depends=[rgdal sp]; }; rcarbon = derive2 { name="rcarbon"; version="1.4.3"; sha256="18yxliq6bxrrkd6xhlrxbbh017lclsfkvmgq662zy58a6wfjmqxh"; depends=[doSNOW foreach iterators knitr snow sp spatstat spatstat_core spatstat_geom spatstat_linnet]; }; rcartocolor = derive2 { name="rcartocolor"; version="2.0.0"; sha256="08ljaag2mnhz2671zvwji1sp003z94lz30vjidmybm9fp8piqw5g"; depends=[ggplot2 scales]; }; @@ -15293,14 +14948,12 @@ in with self; { rcbayes = derive2 { name="rcbayes"; version="0.2.0"; sha256="1qwbpx9snqgaz7gshvyhq9ylsf59grjhx56f7cnq25h2f76km9cc"; depends=[BH dplyr magrittr Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools shiny shinythemes StanHeaders tibble tidybayes]; }; rcbsubset = derive2 { name="rcbsubset"; version="1.1.7"; sha256="0k4jgjwq0mxpxs43010j5ija8hqzwcdqljzxdymji5ndcd2gvwig"; depends=[MASS plyr rcbalance rlemon]; }; rcc = derive2 { name="rcc"; version="1.0.0"; sha256="0a77d54c9qahhsjzpa0436ddsj4j44013r7rbxm0fjz04c0d2921"; depends=[]; }; - rccdates = derive2 { name="rccdates"; version="1.0.0"; sha256="1f87qlw62am2qy1zzrz91vmsn8axhld44gak61xa7046675hm98s"; depends=[rccmisc]; }; - rccmisc = derive2 { name="rccmisc"; version="0.3.7"; sha256="171s2ll759xjdnx0z24ih5ix2vcp4qnmf1nf107gij6wv8k450ab"; depends=[dplyr]; }; rccola = derive2 { name="rccola"; version="1.0.2"; sha256="0i846y9l3il2y38g32cifwysca06iakqd6vs15fcwqnzm8g0sg5j"; depends=[getPass keyring redcapAPI yaml]; }; rcdd = derive2 { name="rcdd"; version="1.5"; sha256="0zxx0qvv26ba30jkm8mvca4h59rqklay4jwazpcw7h9dzp4189jr"; depends=[]; }; rcdk = derive2 { name="rcdk"; version="3.6.0"; sha256="0v3i1402hrlp3sap3ryjd63gac8wbcwj7lfa3smk1agqy659glcx"; depends=[fingerprint iterators itertools png rcdklibs rJava]; }; rcdklibs = derive2 { name="rcdklibs"; version="2.3"; sha256="16ijvzsc1irpz1z2xd82i2saafsvpn0x5lr54c5gx9bfb35gacyp"; depends=[rJava]; }; rchallenge = derive2 { name="rchallenge"; version="1.3.4"; sha256="0i402p6ccjn10ix5nln30pab5nd78hg5q4ivvgc4i99nx7aq0xpx"; depends=[knitr rmarkdown]; }; - rcheology = derive2 { name="rcheology"; version="4.1.3.0"; sha256="10ybq2m62grn6m1nag7i5da2xb725z1jqd9ky7hcxmlv0n286m5q"; depends=[]; }; + rcheology = derive2 { name="rcheology"; version="4.2.0.0"; sha256="12zrlw6yba4vmkl688bzyz2b41fi8c8jsddj0m2s0klwbziawzil"; depends=[]; }; rchess = derive2 { name="rchess"; version="0.1"; sha256="0qnvvvwcl02rmqra9m7qnhy40cbavswbq6i0jm47x6njmr1gpfhy"; depends=[assertthat dplyr ggplot2 htmlwidgets plyr R6 V8]; }; rchie = derive2 { name="rchie"; version="1.0.2"; sha256="1m89mwq5f81yr2vc3wvnxkpm04bad11sx5fllcd3yy8ilghmbfp6"; depends=[jsonlite V8]; }; rcites = derive2 { name="rcites"; version="1.2.0"; sha256="1lyahgpjskzqlmjnz14kkkrl30by1nzzi02wsf0rfskbdhmwc5in"; depends=[cli curl httr jsonlite]; }; @@ -15311,10 +14964,9 @@ in with self; { rcolors = derive2 { name="rcolors"; version="0.1.0"; sha256="19lkwd1wdwq9if957qjgrz9mq6s8x49dig8snivhw9ksffcfy4xp"; depends=[magrittr]; }; rcompanion = derive2 { name="rcompanion"; version="2.4.15"; sha256="1pb2ypc2i1dcvs4i099lzh9jz1ly2i33vw98vw7g1kxmgg5kjy9l"; depends=[boot coin DescTools lmtest multcompView nortest plyr]; }; rcompendium = derive2 { name="rcompendium"; version="1.0"; sha256="1j6hxf6hdvi90qhlzra0jkgyn7a3q4skj594b7lxg5mfkzs7zr2j"; depends=[clisymbols crayon devtools gert gh gtools renv rmarkdown rstudioapi stringr usethis xfun]; }; - rconfig = derive2 { name="rconfig"; version="0.1.1"; sha256="0jcwfhbqh4sb8y5wd8l05xz0y7nn28dhfkb2r40jbp6ycrvw8mpp"; depends=[jsonlite yaml]; }; + rconfig = derive2 { name="rconfig"; version="0.1.2"; sha256="0qxdh3jsaaxrvn2lvfhsj5faf5vajyl9yjanaqv1f7gd47b4kxis"; depends=[jsonlite yaml]; }; rcoreoa = derive2 { name="rcoreoa"; version="0.4.0"; sha256="0q5dprz0ag04w265bk7isd2lr61nahf223qza47m0izd9nyi9h8a"; depends=[crul hoardr jsonlite pdftools]; }; rcorpora = derive2 { name="rcorpora"; version="2.0.0"; sha256="1b8xa81mn3afadz77576vda9b0d99f1k096drxrpqd989g993aqy"; depends=[jsonlite]; }; - rcosmo = derive2 { name="rcosmo"; version="1.1.3"; sha256="08zw2xnchima9gzjn3nchj8q1phf3cchq9340fffsac77l4am3mb"; depends=[cli entropy FITSio geoR mmap nnls Rcpp rgl tibble]; }; rcrimeanalysis = derive2 { name="rcrimeanalysis"; version="0.4.2"; sha256="1b41f636bkr0mr72klyad4fyx5zf129c9h1523rkfkyxrlf527yx"; depends=[dplyr forecast ggmap htmltools igraph KernSmooth leaflet leafsync lubridate pals raster Rcpp rgdal sp]; }; rcrossref = derive2 { name="rcrossref"; version="1.1.0"; sha256="1n33skb3mwcn9xfd49p8m72z3kqz8n6dj48d286xdpd0zlcahqbh"; depends=[crul dplyr DT jsonlite miniUI plyr R6 shiny stringr tibble xml2]; }; rcrypt = derive2 { name="rcrypt"; version="0.1.1"; sha256="002r5wr0bmqbj014iz8wacj883j6gqcxc786m6p9a7zdrjpx2pqi"; depends=[]; }; @@ -15328,7 +14980,7 @@ in with self; { rddensity = derive2 { name="rddensity"; version="2.2"; sha256="00xmdy3885j3j5sh3civlgggscr946gh7ibd6namqhbzhsnpwrd3"; depends=[ggplot2 lpdensity]; }; rddtools = derive2 { name="rddtools"; version="1.6.0"; sha256="12lxdpazfhwn5kkzs91qhs0xcky30dj01yp0v5708ahr1ywqdxmd"; depends=[AER Formula ggplot2 KernSmooth lmtest locpol np rdd rdrobust rmarkdown sandwich]; }; rde = derive2 { name="rde"; version="0.1.0"; sha256="1zw9gdh90hl0wc5c0xwl5x7566r611wk73sbqdmpzpswjyyl9aqm"; depends=[clipr]; }; - rdecision = derive2 { name="rdecision"; version="1.1.0"; sha256="1rj9sw6r6rimzxbyjjczi5znmdkvqb7kkrdsnzz35n8g43s7h2wr"; depends=[R6 rlang]; }; + rdecision = derive2 { name="rdecision"; version="1.1.1"; sha256="0bn4453568nqvrbaj3gmlbmj2ws131ndsrdsqli62hiivs2f713c"; depends=[R6 rlang]; }; rdetools = derive2 { name="rdetools"; version="1.0"; sha256="0pkl990viv7ifr7ihgdcsww93sk2wlzp2cg931wywagfp8dijd02"; depends=[]; }; rdflib = derive2 { name="rdflib"; version="0.2.5"; sha256="0qbqn72c26pi3mc53z0sip5zpmkdpwggysj5vrn4zgccs7932r79"; depends=[dplyr jsonld readr redland stringi tidyr]; }; rdfp = derive2 { name="rdfp"; version="0.1.4"; sha256="1490227hhfjjscfmd8p897v1ijs61pk5sc0a2vr9yjnfmsnxpqrl"; depends=[curl data_table dplyr httr lubridate plyr purrr readr XML xml2]; }; @@ -15336,10 +14988,10 @@ in with self; { rdi = derive2 { name="rdi"; version="1.0.0"; sha256="1c49mkxfyxhqz8fc155kgy1k5by0y2c1ahy8k6pn9k8l1j4m4m2q"; depends=[beanplot gplots pdist stringr]; }; rdian = derive2 { name="rdian"; version="0.1.1"; sha256="0i4ljcqhmrwrqbhi321iffypxj4kndx47ssljnixr3fx2lmqh0q1"; depends=[curl httr]; }; rdist = derive2 { name="rdist"; version="0.0.5"; sha256="1jb6dgp1f3307h96v20pjxpkxfz08ij98w0yj5cdx1g2kwfl0h0w"; depends=[Rcpp RcppArmadillo]; }; - rdiversity = derive2 { name="rdiversity"; version="2.0"; sha256="1x9500iq9dkqpq79m1fzl2f1c7bbhrq2v0kqz8wx6dd6dlkgkpqn"; depends=[binaryLogic reshape2]; }; + rdiversity = derive2 { name="rdiversity"; version="2.2.0"; sha256="0h40piqckcm3z5aj65x20giyqwjp32qi0yvjbfgaizm1dxfn6zqh"; depends=[reshape2 stringdist]; }; rdlocrand = derive2 { name="rdlocrand"; version="0.9"; sha256="124vyky0sydp15idyzai7j7h77030j062q39v20gzzrzag81pd90"; depends=[AER sandwich]; }; rdmulti = derive2 { name="rdmulti"; version="0.8"; sha256="0hkcvcndfma9sbw6brmj29ka52kn3axhwk1cix3vw5ganwnmpaqh"; depends=[ggplot2 rdrobust]; }; - rdnb = derive2 { name="rdnb"; version="0.1-4"; sha256="069xlfdjjyl4a9clxj8m5gfplmll6qiqzms59mnsql3b74jamxi3"; depends=[brew httr stringr xml2]; }; + rdnb = derive2 { name="rdnb"; version="0.1-5"; sha256="00fpycbsczla7vcik649kdw9q0ckqml5f1f1bhphk2mazk12pqva"; depends=[brew httr stringr xml2]; }; rdoc = derive2 { name="rdoc"; version="0.1.0"; sha256="0ac6413jyrr7m25z30n3bpiafsvjx38ik6rrjzsiqxrfp41j6l9x"; depends=[cli crayon prettycode R6]; }; rdomains = derive2 { name="rdomains"; version="0.2.1"; sha256="1gpgryfdv4dhv98nfnr15lqq9ndwi8q17rwm5z7j2klgi5d644ld"; depends=[aws_alexa curl devtools glmnet httr jsonlite Matrix R_utils urltools virustotal XML xml2]; }; rdoxygen = derive2 { name="rdoxygen"; version="1.0.0"; sha256="16907969w66xvy62k45rw10qfv4x8z6jkkc6i97vppkgnlvf4d4b"; depends=[devtools]; }; @@ -15350,7 +15002,7 @@ in with self; { rdwd = derive2 { name="rdwd"; version="1.5.0"; sha256="1x63zarcyc1rapg46h0vlym3v2kbd6ql2vza9jqly371p5g8l1ci"; depends=[berryFunctions pbapply]; }; rdwplus = derive2 { name="rdwplus"; version="0.1.0"; sha256="1y4dnm2bb0w6pim4h79mv2km88s78vhsn5fhs7z45m0564hgk0x2"; depends=[raster rgrass7]; }; re2 = derive2 { name="re2"; version="0.1.2"; sha256="13cxq6zw66b0wqwv19kkgn8z9kx1p9x1z1fv9cgn1iq7v1br8gm4"; depends=[Rcpp]; }; - reReg = derive2 { name="reReg"; version="1.4.2"; sha256="1w0h1dsy3hl66fghjcbgc4nh9k1dkga4d53qb5iyd35a5pwpv41v"; depends=[BB dfoptim directlabels ggplot2 MASS nleqslv optimx Rcpp RcppArmadillo reda rootSolve scam SQUAREM survival]; }; + reReg = derive2 { name="reReg"; version="1.4.3"; sha256="09lidqy0jysmnxpj1l7xwnh2h6mn87b28yp7wf7ivbvcgxdyd7m3"; depends=[BB dfoptim directlabels ggplot2 MASS nleqslv optimx Rcpp RcppArmadillo reda rootSolve scam SQUAREM survival]; }; reactR = derive2 { name="reactR"; version="0.4.4"; sha256="15c0ij3xglsdavkpzgnkbyl5yb39jrn6zhlrdjiwp1m9cnrqzf2w"; depends=[htmltools]; }; reactable = derive2 { name="reactable"; version="0.2.3"; sha256="17wl75cblm0rgq3chl96vj7wmbcmszss1zjppfccz1hcimfmlrpx"; depends=[digest htmltools htmlwidgets jsonlite reactR]; }; reactablefmtr = derive2 { name="reactablefmtr"; version="2.0.0"; sha256="1r864j8ma1sas2fglw5hdkhf3lxrkri7mf2k5j8cpq7398kgzp94"; depends=[dplyr htmltools htmlwidgets magrittr purrr reactable sass shiny stringr tippy webshot]; }; @@ -15366,7 +15018,7 @@ in with self; { readMzXmlData = derive2 { name="readMzXmlData"; version="2.8.1"; sha256="03lnhajj75i3imy95n2npr5qpm4birbli922kphj0w3458nq8g8w"; depends=[base64enc digest XML]; }; readODS = derive2 { name="readODS"; version="1.7.0"; sha256="1hi217ab7hp15jsbzi5ak57cqf8jn2rv78bnn74q72gn9mrfra7n"; depends=[cellranger readr stringi xml2]; }; readOffice = derive2 { name="readOffice"; version="0.2.2"; sha256="0dg7fwxdl41nrjqnxvh9rpz0la99iid0wy51gncjwrh3s85fj2ks"; depends=[magrittr purrr rvest xml2]; }; - readabs = derive2 { name="readabs"; version="0.4.11"; sha256="1hkljjb4haw1y6j1jdf1bqnh50knlfyran7wqb9qydrh8riayh16"; depends=[dplyr fst glue httr hutils purrr readxl rlang rvest stringi tidyr xml2]; }; + readabs = derive2 { name="readabs"; version="0.4.12"; sha256="0w32in53jcj99v5dq64zsg0isyjkwbzpjvahxqcs8s9x5ikq55mk"; depends=[dplyr fst glue httr hutils purrr readxl rlang rvest stringi tidyr xml2]; }; readbitmap = derive2 { name="readbitmap"; version="0.1.5"; sha256="14825906l326w59g6apy00j55jg3h5kx2r6s031f4gdkbrc7szbk"; depends=[bmp jpeg png tiff]; }; readbulk = derive2 { name="readbulk"; version="1.1.3"; sha256="0rqz0r5ygwgfqkzv2130sciz3j2p888c2005wsk1m5403syi78an"; depends=[jsonlite plyr]; }; reader = derive2 { name="reader"; version="1.0.6"; sha256="1x489q3ljap4zpny68mx83mgxaqiwlkglcy57whwhnh33dd7qp4h"; depends=[NCmisc]; }; @@ -15426,32 +15078,31 @@ in with self; { redcapAPI = derive2 { name="redcapAPI"; version="2.3"; sha256="1myycwdrlw1405fxc82zd8ps8bhdvf2ffsb91pia5ijf6952v8pf"; depends=[checkmate chron DBI httr labelVector lubridate readr stringr tidyr]; }; reddPrec = derive2 { name="reddPrec"; version="0.4.0"; sha256="0zmkaiivvjq8mcaz310zgjjc7y0wgsqv29bf8nhli5qawaczvb9a"; depends=[fields snowfall]; }; redist = derive2 { name="redist"; version="3.1.5"; sha256="18g78x6riqqczhi5rixr7fikfzhrf46b62y4ii18r99q9z65k4z4"; depends=[coda doParallel dplyr foreach ggplot2 patchwork Rcpp RcppArmadillo readr rlang servr sf stringr sys tidyselect vctrs]; }; - redistmetrics = derive2 { name="redistmetrics"; version="1.0.1"; sha256="01s3aim2rmsbs74mc3banqv4m1mdb82qa38wg96pydw7qr7by63w"; depends=[cli doParallel dplyr foreach geos magrittr Rcpp RcppArmadillo rlang sf wk]; }; + redistmetrics = derive2 { name="redistmetrics"; version="1.0.2"; sha256="1jq4qz43j7qjzx2pac3i1p2h331pgj8z9zfg4s1dhn56rwscn8f5"; depends=[cli doParallel dplyr foreach geos magrittr Rcpp RcppArmadillo rlang sf wk]; }; redland = derive2 { name="redland"; version="1.0.17-16"; sha256="1nzxyczsz274751z48glh8qzv1v9rdv3raq6whyp63nsi2xdri90"; depends=[roxygen2]; }; redlistr = derive2 { name="redlistr"; version="1.0.3"; sha256="003jxfmj1gryw77vnrvaxmpvjbshlq53wgcrj02mcywfcqzg4jcr"; depends=[plyr raster rgeos sp]; }; redoc = derive2 { name="redoc"; version="2.0.0.49"; sha256="06nfqw6xs0ij21mjbqk9sdvhhh0pqf6fwankvagsbyrv742g7qkx"; depends=[jsonlite]; }; redux = derive2 { name="redux"; version="1.1.3"; sha256="1bbn2aznhfh78gbqq0g2n5lbg1q9aa7v8py3xv9gk97rg27jz49x"; depends=[R6 storr]; }; ref_ICAR = derive2 { name="ref.ICAR"; version="1.0"; sha256="0k6czsbjclgmi7vp5hl50jghkzm573s50993iz3dcv55mv662251"; depends=[coda MCMCglmm mvtnorm Rdpack rgdal spdep]; }; refer = derive2 { name="refer"; version="0.1.0"; sha256="1y0n4xzhn96d25mwjr0735w990rz2kbxhcpsc5k5vwbwq64q6wsd"; depends=[eList matchr]; }; - referenceIntervals = derive2 { name="referenceIntervals"; version="1.2.0"; sha256="0wf8c71z7gq2f91q60dyy7mrxsnhq7x3wdllmzn2lpabgv2wrm85"; depends=[boot car extremevalues outliers]; }; + referenceIntervals = derive2 { name="referenceIntervals"; version="1.3.0"; sha256="0q6rpz8llfsk86y8i1sdlqi97gcfx9k7q510pnz9nr7ag0w6w5mc"; depends=[boot extremevalues MASS outliers]; }; refineR = derive2 { name="refineR"; version="1.0.0"; sha256="13bxi1fp0517lvwdwdjc8vm7sr38kwjk6d17qra0is1mlac4wyj3"; depends=[ash future future_apply]; }; - refinr = derive2 { name="refinr"; version="0.3.1"; sha256="0q76sr050pg3ahwzcxj08mjig0k2jq8yh7nv6d914pwg3dhq05sn"; depends=[Rcpp stringdist stringi]; }; + refinr = derive2 { name="refinr"; version="0.3.2"; sha256="05jz3hgwghkbdi7r4977scifzcy5vrqmasjayq2mavada6dzj45l"; depends=[Rcpp stringdist stringi]; }; refitME = derive2 { name="refitME"; version="1.2.2"; sha256="125hxp24vlwg3g0v1rlhi3zbvnnzyj95a6d9f52f98hf6bp05yhb"; depends=[caret dplyr expm MASS mgcv mvtnorm sandwich scales SemiPar VGAM VGAMdata]; }; refnr = derive2 { name="refnr"; version="0.1.0"; sha256="1gjjzxpyxm1kf1pqk99bd7f2j85rzmww3r1268bccivf19rs881i"; depends=[]; }; - refreg = derive2 { name="refreg"; version="0.1.0"; sha256="0fgf99a9xki9x0kjrhi7lyr1f4gpfl52xis058fd70y4pj1zz37l"; depends=[doParallel foreach ggplot2 gridExtra KernSmooth ks matrixcalc mbend mgcv misc3d pracma RColorBrewer rgl sp stringr]; }; + refreg = derive2 { name="refreg"; version="0.1.1"; sha256="0dqlqh3ndpqjab2cz3aikb9srhmyj3j133lwcnajgycwr5334mri"; depends=[doParallel foreach ggplot2 gridExtra KernSmooth ks matrixcalc mbend mgcv misc3d pracma RColorBrewer rgl sp stringr]; }; refreshr = derive2 { name="refreshr"; version="0.1.0"; sha256="0p240a7f2yajrd5qqjv0la49vm2cs6i32zyxxjcs6rd2a1z9xwfs"; depends=[crayon dplyr lubridate stringr]; }; refset = derive2 { name="refset"; version="0.1.1"; sha256="1xbwvm9066g3f7pd34z5jh04vph4ddy2lkcgmf4kiwa1k5czpwg1"; depends=[]; }; refuge = derive2 { name="refuge"; version="0.3.3"; sha256="0cq62rgawlam4j4h4sz4zvkgi0x21k4syy4vh7i40bxrq0z9ysyz"; depends=[dplyr httr jsonlite tibble]; }; - refund = derive2 { name="refund"; version="0.1-24"; sha256="089dl0vjn474gka9j18fk125aqvwd2gx61g1rv8cp6m0caq99pzg"; depends=[boot fda gamm4 ggplot2 grpreg lattice lme4 magic MASS Matrix mgcv nlme pbs RLRsim]; }; + refund = derive2 { name="refund"; version="0.1-26"; sha256="1svwqayi2iszy1zizprfmaw0m7p1kd2l85dj8g79lv4zwc09lrp2"; depends=[boot fda gamm4 ggplot2 grpreg lattice lme4 magic MASS Matrix mgcv nlme pbs RLRsim]; }; refund_shiny = derive2 { name="refund.shiny"; version="0.4.1"; sha256="0pjcb20p9mjj08lk27ig78gj8sq4lwljmq52bszm9qdhyhhpap5m"; depends=[dplyr ggplot2 gridExtra lme4 plotly refund registr reshape2 shiny tidyr]; }; regDIF = derive2 { name="regDIF"; version="1.0.0"; sha256="1gw4ymg6qk1v4nkayqw706f2la0yfkwvdjlam4wc00mnjjbxgnyd"; depends=[statmod]; }; regRSM = derive2 { name="regRSM"; version="0.5"; sha256="0nbp3yjk9r7qvwm7wla39155rmqnvpdb720iq3b0hcy1bbsxbk9s"; depends=[doParallel foreach Rmpi]; }; regclass = derive2 { name="regclass"; version="1.6"; sha256="0m974k3yhf0dgv5f1qjs8c53mam0cll3cjn35ywfrmlfla0wlhf5"; depends=[bestglm leaps randomForest rpart rpart_plot VGAM]; }; regexPipes = derive2 { name="regexPipes"; version="0.0.1"; sha256="1hk0rhvmgzcyf5cyl8hjznl3ll25kpasqikfr6nxd6ian2slvmmb"; depends=[]; }; regexSelect = derive2 { name="regexSelect"; version="1.0.0"; sha256="0xnb9qa8l63ang4r40ky4qhlrs5mbzvmj98dgij26j3mq1ys1pa7"; depends=[shiny shinyjs]; }; - regexTestR = derive2 { name="regexTestR"; version="0.1.3"; sha256="0nnp2xlrrywpi1lmj8ymsjgiqvq8777hhdgcwjq549m7whfw6lsg"; depends=[config data_table DT golem htmltools pkgload processx purrr RColorBrewer rvest shiny shinyBS shinythemes stringr tidyr xml2]; }; regfilter = derive2 { name="regfilter"; version="1.0.2"; sha256="0b0msgx2ffcbd8aijxknwb54ha38dqbvgzwsggf4v7mlpqga1qm0"; depends=[e1071 FNN gbm modelr nnet randomForest rpart]; }; - reghelper = derive2 { name="reghelper"; version="1.1.0"; sha256="16mj3v9rn9krx4a8xnb2l01wnk17hgn0pkmkvqh4baby9a479hv7"; depends=[ggplot2 lme4 MASS nlme]; }; + reghelper = derive2 { name="reghelper"; version="1.1.1"; sha256="0v1987rs6kcpizfhrp3hxsyx9arn5vsbapjfgj9478j73mm844ji"; depends=[ggplot2 lme4 MASS nlme]; }; regional = derive2 { name="regional"; version="0.3.3"; sha256="0gwm3lqmils8dpv0g0919caqifa90lv3vrjqcky33i7jd18c20g2"; depends=[philentropy terra]; }; regioncode = derive2 { name="regioncode"; version="0.1.1"; sha256="1h5qbpcfgl86g0cy5nz9vvwzqsp335lqhl4djil3k3mab38k778d"; depends=[dplyr knitr pinyin textshaping]; }; regions = derive2 { name="regions"; version="0.1.8"; sha256="16i0w1my9zfwh0p9qvc3vcid0r6rb6gbvvrx03vbg81l6cxrglr4"; depends=[assertthat countrycode dplyr glue here magrittr purrr readxl rlang stringr tibble tidyr tidyselect]; }; @@ -15461,15 +15112,15 @@ in with self; { regmed = derive2 { name="regmed"; version="2.0.4"; sha256="19cc0nx4463jny9cw5smb95crb3makspysfx06h82amhyqjyzw60"; depends=[glasso igraph knitr lavaan Rcpp RcppArmadillo]; }; regmedint = derive2 { name="regmedint"; version="1.0.0"; sha256="1rysxdci13r08y79fyd5h5idl2ip4i7b8v4x6n2rlc0vwi5wc61a"; depends=[assertthat Deriv MASS Matrix sandwich survival]; }; regnet = derive2 { name="regnet"; version="0.4.0"; sha256="0qb7sp464fyxn0bslkapjni3pzk7l6fdgabfbzja08flsr63r4mh"; depends=[glmnet Rcpp RcppArmadillo]; }; - rego = derive2 { name="rego"; version="1.3.5"; sha256="02zlllxral9ar4nwyfjijzkymkch8vlnv0pfjp8lns8dzd3h1rvn"; depends=[Rcpp]; }; + rego = derive2 { name="rego"; version="1.4.1"; sha256="14gdikf2lv4cfxdyq5j89d1kiaz3aqmqwqcisq4gv7k2jw62m6fi"; depends=[Rcpp]; }; regplot = derive2 { name="regplot"; version="1.1"; sha256="048w0hnd2y8k27msjhw2g4ygck6i09698qk24sz7563z82gvj52w"; depends=[beanplot lme4 sm survival vioplot]; }; - regport = derive2 { name="regport"; version="0.2.0"; sha256="1qj4wf02ycvdb9gqgvfn19k2cqxy1mjdl9yy80vfm4m561ldpfr5"; depends=[broom_helpers data_table dplyr forestploter glue parameters R6 rlang survival]; }; + regport = derive2 { name="regport"; version="0.3.0"; sha256="0mbx1ja1mbhd0z7jcxjrs6b8ldp87ym21fyqigx3w295kh9zm0xx"; depends=[broom_helpers data_table dplyr forestploter glue parameters R6 rlang survival]; }; regrap = derive2 { name="regrap"; version="1.0.1"; sha256="0yrxhlam7jmxwk1v53kllv6ja1m938symfvqp84xb278r3wb1wv7"; depends=[mvtnorm]; }; regress = derive2 { name="regress"; version="1.3-21"; sha256="0mkf1dyg0r09ifdvmc3g6b0q0h819j0kfh1cb33r1vsr8yfjvgbz"; depends=[]; }; regressoR = derive2 { name="regressoR"; version="2.0.1"; sha256="0h5f085vpmvjzrr3wiq7gvj0cma41szikmp8iaczhc04cdj6k18b"; depends=[DT e1071 echarts4r gbm glmnet golem htmltools kknn neuralnet pls randomForest rlang rpart rpart_plot shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs]; }; regrrr = derive2 { name="regrrr"; version="0.1.3"; sha256="1ih27mgqfzjlas97rvj18s8j3p0bpwb03vr71yrq776vzv1v6fcs"; depends=[dplyr ggplot2 lspline magrittr MuMIn purrr robustbase scales stringr tidyr usdm]; }; regsem = derive2 { name="regsem"; version="1.8.0"; sha256="1v33wkrsawcvaa06cijp8ybwi82a0x34y59hdknwdbywplnirzr8"; depends=[lavaan Rcpp RcppArmadillo Rsolnp]; }; - regspec = derive2 { name="regspec"; version="2.4"; sha256="18i6k2wqaddrc0dz7v8x3s9205dcfwanqhpnxa9hkpyqzbb17pd3"; depends=[]; }; + regspec = derive2 { name="regspec"; version="2.5"; sha256="1wbzi926cppxzvxfbx7qg1cxxvjd3072542ng20y9076dim3ry83"; depends=[]; }; regsubseq = derive2 { name="regsubseq"; version="0.12"; sha256="0879r4r8kpr8jd6a3fa9cifm7cv0sqzz8z1alkm1b2fr1625md3g"; depends=[]; }; regtomean = derive2 { name="regtomean"; version="1.0"; sha256="1w5i75iwwc2w2nzw9yap86njhq9jz0pc9cn39ivxdam4a9693jjz"; depends=[effsize formattable mefa plotrix plyr sjlabelled sjmisc sjPlot]; }; regtools = derive2 { name="regtools"; version="1.7.0"; sha256="00g50dcfy93rgy9a2l24rsjgwk1575gxhpg9dy5r9928nwwd6lx9"; depends=[car data_table FNN glmnet gtools MASS mvtnorm polyreg R_utils rje sandwich text2vec]; }; @@ -15479,13 +15130,12 @@ in with self; { rehydratoR = derive2 { name="rehydratoR"; version="0.5.2"; sha256="1d94m9hv1l72l9lph2vzbq4qqbfcgyhv2qk82p9vb8l2ckavjzvv"; depends=[dplyr jsonlite rtweet tibble]; }; reinstallr = derive2 { name="reinstallr"; version="0.1.5"; sha256="0yr1fzfahxqffjh5vm6y6b0iay8p0cirlzq2z4hlz7nci57fx5yr"; depends=[]; }; reinsureR = derive2 { name="reinsureR"; version="0.1.0"; sha256="19ayikzcq6z4i7xrlby76yy2nwvrsv6xdfrmvzyr7rz934flh8kd"; depends=[data_table dplyr ggplot2 viridis viridisLite]; }; - relMix = derive2 { name="relMix"; version="1.3.3"; sha256="03zzmsx2i7ib1mhdfk5igvr1winl9g2dfjqz2kzvcx3rl7l6hjym"; depends=[Familias gWidgets2 gWidgets2tcltk]; }; relSim = derive2 { name="relSim"; version="0.3-1"; sha256="1d6yihapfyjlfw87l370wyfyby7ivvykx04qljffdv3hi801gn7f"; depends=[multicool Rcpp rvest stringr xml2 xtable]; }; relaimpo = derive2 { name="relaimpo"; version="2.2-6"; sha256="1v2zvakzrnc89dshhpkrikfwa7l786sk5vnz4khil5f53biahm4r"; depends=[boot corpcor MASS mitools survey]; }; relatable = derive2 { name="relatable"; version="1.0.0"; sha256="0147gin6dn76gg7gassar64f0w2gny1sh0k60v7914qhb4sj4s7i"; depends=[compare]; }; relations = derive2 { name="relations"; version="0.6-12"; sha256="18qqlw04crg3f17hzcwyl2sy4y1ffd4r4vf758nzv0bhhivb99aq"; depends=[cluster sets slam]; }; relaxo = derive2 { name="relaxo"; version="0.1-2"; sha256="1rzmq7q3j271s6qwwrmwidv0vxcjpgjhyiqgr6fkczkai2lbnd8x"; depends=[lars]; }; - reldist = derive2 { name="reldist"; version="1.7-0"; sha256="0i04d6w3r6fzm4bykz6lnnh6dngmd61v5wlpli70r3fzdzhi7fji"; depends=[densEstBayes Hmisc mgcv]; }; + reldist = derive2 { name="reldist"; version="1.7-1"; sha256="17kbqqapqmckghv7jizibmicv3bzbycfr3mz4xg3yjp3c2bap4r6"; depends=[densEstBayes mgcv]; }; relen = derive2 { name="relen"; version="1.0.1"; sha256="0br7c3j30a1yc61pyinmk5lvk8zw9rivd0z2096g6crgmbzix8ml"; depends=[]; }; relevance = derive2 { name="relevance"; version="1.3"; sha256="185fb5vjq1l6q1yz4qyvm2qli1xpp3wc4d1s17y28daljmdijlw8"; depends=[]; }; relevent = derive2 { name="relevent"; version="1.1"; sha256="10wy6qbg91bq8cs5fas50nnfw80rpsgr8bqpfbsxcmsh43ilpgg9"; depends=[coda sna trust]; }; @@ -15517,13 +15167,12 @@ in with self; { repello = derive2 { name="repello"; version="1.0.1"; sha256="118m0vybgf5ys856zivn7gvjxqq163gkrhrpyl1avylib4bp3mcq"; depends=[dplyr httr stringr]; }; repfdr = derive2 { name="repfdr"; version="1.2.3"; sha256="0jpk44arg1jib0h2w90h851bs5cd1ss32fab9bfvf9iir2jk8985"; depends=[Rcpp]; }; replacer = derive2 { name="replacer"; version="1.0.1"; sha256="1y5f61r0rc4snpv8sjh4g5gc0f7rik5wdnh92sakafwiisjssmc1"; depends=[data_table]; }; - replicateBE = derive2 { name="replicateBE"; version="1.1.1"; sha256="11xhn75n8hfw8ab5gkg9bi6vg66220hsdywjbskycdly4c5444jk"; depends=[lmerTest nlme pbkrtest PowerTOST readxl]; }; + replicateBE = derive2 { name="replicateBE"; version="1.1.3"; sha256="079fkrp9jhp3qr5a1wvz66ldqxbj2pqarmxq5f1adqnyym2aw684"; depends=[lmerTest nlme pbkrtest PowerTOST readxl]; }; replicatedpp2w = derive2 { name="replicatedpp2w"; version="0.1-3"; sha256="1h680xn403fm98ywyxqwhq7llsaghgd4ffjq7r5bdb1r9ahvxrv0"; depends=[spatstat spatstat_core spatstat_geom spatstat_utils]; }; replicationInterval = derive2 { name="replicationInterval"; version="2.0.1"; sha256="1jyvyqr8r2fs1cmbz7zjcc8p116bnkslvx27pqi92y5pxgqvsqvr"; depends=[ggplot2 MASS MBESS pbapply]; }; repmis = derive2 { name="repmis"; version="0.5"; sha256="0z5mjbsl24yjbl0aawr35grcal44rf2xbwv1hy7bdkms94ix79b5"; depends=[data_table digest httr plyr R_cache]; }; repmod = derive2 { name="repmod"; version="0.1.7"; sha256="1rpmvxfw2m3bisi5g90sdfm8wmwg2gv9rzblq9kl70kvrs8pj1qs"; depends=[boot flextable lme4 lmerTest officer xtable]; }; repo = derive2 { name="repo"; version="2.1.5"; sha256="13gdka37kbs4mp16pf65bh28f0dkyalrcrdik6lc67jw8r9h94f9"; depends=[digest]; }; - repoRter_nih = derive2 { name="repoRter.nih"; version="0.1.1"; sha256="1qxcrn0npn5a257bxc06b06icckm2fcrwapv3xazkpc7dw6c1fqn"; depends=[assertthat crayon dplyr httr janitor jsonlite lubridate magrittr purrr tibble]; }; repolr = derive2 { name="repolr"; version="3.4"; sha256="13kmy09c7lk8p1mkdss0krcsfb6d7zcnqpwnl38zkanvh8q3fqhm"; depends=[Matrix Rcpp RcppArmadillo]; }; report = derive2 { name="report"; version="0.5.1"; sha256="1x293zjg4zfkcrgl6dsa6jn0igpxr12ic7jlb4ps79221ygga873"; depends=[bayestestR datawizard effectsize insight parameters performance]; }; reportROC = derive2 { name="reportROC"; version="3.5"; sha256="1f3vdxz45bhks1pm3b41pmh8g8vr2czfr1pn4ddy4kgw5h1x3n8n"; depends=[pROC]; }; @@ -15533,7 +15182,6 @@ in with self; { reportr = derive2 { name="reportr"; version="1.3.0"; sha256="0zynplxqvbmf23cm2rsz3wz2jx6mv55z94mn1k44ny3lx625cnpw"; depends=[ore]; }; reporttools = derive2 { name="reporttools"; version="1.1.3"; sha256="0sx89qb66lczmzcsybxac4razcncf2xcxr0vfkvb3f8jqc7xwcik"; depends=[xtable]; }; repr = derive2 { name="repr"; version="1.1.4"; sha256="0h3h14ybamcbwmm31ib66fx13v75vkzn4bn2v26n2h097sl9qybg"; depends=[base64enc htmltools jsonlite pillar]; }; - represent = derive2 { name="represent"; version="1.0"; sha256="0jvb40i6r1bh9ysfqwsj7s1g933d7z5fq9d618yjrqr6hbbqsvac"; depends=[]; }; representr = derive2 { name="representr"; version="0.1.3"; sha256="0z4bv7n1r8sbk2832sqpkjjpdr4dc6lj6p6c18kbxx9zh660avd4"; depends=[doParallel dplyr foreach Rcpp]; }; represtools = derive2 { name="represtools"; version="0.1.3"; sha256="00hnvzkkcl9d3k115i5l9gs0wah5d11amn7q62m1j158lkqlcfza"; depends=[whisker]; }; reprex = derive2 { name="reprex"; version="2.0.1"; sha256="09k4rasp7mz6n796dsklcbc5l7prljiznrm7fra16qybr9kqcv8f"; depends=[callr cli clipr fs glue knitr rlang rmarkdown rstudioapi withr]; }; @@ -15554,7 +15202,7 @@ in with self; { resemble = derive2 { name="resemble"; version="2.1.2"; sha256="0m8vggahf0yrblxsj2qj3s8y5l2w6vvpl5p7p32cmdj63jic80jr"; depends=[data_table foreach iterators lifecycle magrittr mathjaxr Rcpp RcppArmadillo]; }; reservoir = derive2 { name="reservoir"; version="1.1.5"; sha256="1qvjq8j2gxp6b8m3k3822f9na8a1kbwzzsmq70m763dcq293rgiz"; depends=[gtools]; }; resevol = derive2 { name="resevol"; version="0.2.0.9"; sha256="01w95ylmgyj75shljkmkmh0pb1gl7ys413fay4qbzll1z01rng1w"; depends=[]; }; - reshape = derive2 { name="reshape"; version="0.8.8"; sha256="0s6i0sqxg1vldxs6miv8mi0zydxbqzgpmzfiwkj8y7jix3yrfmad"; depends=[plyr]; }; + reshape = derive2 { name="reshape"; version="0.8.9"; sha256="0j203qmc076x5lp6q2xi4dq4xdb73jmsa42rpxp1c37knnrph4br"; depends=[plyr]; }; reshape2 = derive2 { name="reshape2"; version="1.4.4"; sha256="1n0jrajpvc8hjkh9z4g8bwq63qy5vy5cgl2pzjardyih4ngcz3fq"; depends=[plyr Rcpp stringr]; }; resourcer = derive2 { name="resourcer"; version="1.2.0"; sha256="1ybmhs9f8qh6vmlvc4lnyklqjd23qhgflxaak1j17k0jf1a317n9"; depends=[httr R6]; }; respR = derive2 { name="respR"; version="2.0.2"; sha256="0670hy7gg8bbjkjqcvchm83jr57725r8szix66mqggwx0xwjcxj0"; depends=[data_table dplyr glue lubridate magrittr marelac purrr readxl roll segmented stringr xml2]; }; @@ -15570,7 +15218,7 @@ in with self; { resumer = derive2 { name="resumer"; version="0.0.5"; sha256="0k3s2i102hvsag7jiahgfpjc09646xjpxcpv5x3d91ch3xipdc0b"; depends=[dplyr rmarkdown useful]; }; rethinker = derive2 { name="rethinker"; version="1.1.0"; sha256="02zfx08s5xisv1v4y16iqbddi9kb3fcr249b3414fzvs4nm5as94"; depends=[rjson]; }; rethnicity = derive2 { name="rethnicity"; version="0.2.2"; sha256="0ccx6314gh08bnqca8a5x2bq4fk290lba0k72f0anszyamkvgfnj"; depends=[cli Rcpp RcppEigen RcppThread]; }; - reticulate = derive2 { name="reticulate"; version="1.24"; sha256="1k0nv43fa9lx44pamxpprnvvmsp15adn5z6hg9siyq0n94hca65r"; depends=[here jsonlite Matrix png rappdirs Rcpp RcppTOML withr]; }; + reticulate = derive2 { name="reticulate"; version="1.25"; sha256="0b1szzsqyc8wcfpkn5517bb1ds064vs2hky71my3p74kfngay991"; depends=[here jsonlite Matrix png rappdirs Rcpp RcppTOML withr]; }; retistruct = derive2 { name="retistruct"; version="0.6.3"; sha256="1zij37n2ja3yx6n1agdkb3lj42p01parcg6djv60bng9c2qq0wsl"; depends=[foreign geometry png R_matlab R6 rgl RImageJROI RTriangle sp ttutils]; }; retractcheck = derive2 { name="retractcheck"; version="1.0.0"; sha256="1c4p8afh9g359s560sswcys3manc0lqvk0aqgvd09p4rpzls2dm7"; depends=[httr plyr textreadr]; }; retriever = derive2 { name="retriever"; version="0.2.1"; sha256="0vachj8rzh8g55y18hz85bsrzr86614frdmr7wz6hszgiq8qgcxy"; depends=[pbapply preprocessCore]; }; @@ -15580,7 +15228,7 @@ in with self; { retry = derive2 { name="retry"; version="0.1.0"; sha256="1yfcfvszfjnvvnjcywgchyiyj3jk9nmvk3h40g6bc24xapfkfl2p"; depends=[later rlang]; }; reutils = derive2 { name="reutils"; version="0.2.3"; sha256="09dhf4s7wz3anrkzqi16abx64gk8ck2142kfd8pv71mjy3x548l7"; depends=[assertthat jsonlite RCurl tibble XML]; }; reval = derive2 { name="reval"; version="3.0-0"; sha256="0b9bmj88rxc3kk14l84v3v4c5252nnfs7h43a9sbggm6sdl1k2am"; depends=[dplyr furrr future purrr rlang]; }; - revdbayes = derive2 { name="revdbayes"; version="1.3.9"; sha256="0j29hp21dab2fnsb6d41ykvyhfkfz1hf0qjpsz4lypc2rnbc3mpm"; depends=[bayesplot Rcpp RcppArmadillo rust]; }; + revdbayes = derive2 { name="revdbayes"; version="1.4.9"; sha256="1m9xsqhgkx47wa4ya6f4yagyzjvrz3br9800h5zpaxj7smd86lbd"; depends=[bayesplot exdex Rcpp RcppArmadillo rust]; }; revealedPrefs = derive2 { name="revealedPrefs"; version="0.4.1"; sha256="1m8y1mj39bnf9q0n9mi0ashvb79lksx5dfkxb04qj2h5kkyxg49g"; depends=[pso Rcpp RcppArmadillo]; }; revealjs = derive2 { name="revealjs"; version="0.9"; sha256="0h4csxrcl1rzmj3g01nf0mr990zc8swrf4jvmxwqsyzx9v2cqbnc"; depends=[rmarkdown]; }; reveneraR = derive2 { name="reveneraR"; version="0.1.1"; sha256="12mm5sq54y7hbgn7p4qc5bdb7hvrdap0z4p731kgj83c7lgw9315"; depends=[dplyr httr jsonlite magrittr purrr tibble tidyr tidyselect]; }; @@ -15591,19 +15239,16 @@ in with self; { revss = derive2 { name="revss"; version="1.0.4"; sha256="0z08kpvc6qi6qklj2dzidm8c9r8v9k28g583smkxiq8ldh405bzm"; depends=[]; }; revtools = derive2 { name="revtools"; version="0.4.1"; sha256="0nms7rwpdzf3xq2incraxppha4c830gcygpbnhwjs92c836hh2f0"; depends=[ade4 modeltools ngram plotly shiny shinydashboard slam SnowballC stringdist tm topicmodels viridisLite]; }; revulyticsR = derive2 { name="revulyticsR"; version="0.0.3"; sha256="0dz9c26qwasgpp6a5fqh1rgq0hp9dhsrcm1h2hbp0cisri8iwsjf"; depends=[dplyr httr jsonlite magrittr purrr tibble tidyr tidyselect]; }; - reweight = derive2 { name="reweight"; version="1.2.1"; sha256="0fv7q1zb3f4vplg3b5ykb1ydwbzmiajgd1ihrxl732ll8rkkfa4v"; depends=[]; }; rewie = derive2 { name="rewie"; version="0.1.0"; sha256="1ysrpd2cqmz27sjj3dh0wpg86685d708kjwiqybwjlw9ap55jb06"; depends=[lme4 MASS plm rockchalk]; }; rex = derive2 { name="rex"; version="1.2.1"; sha256="1mmzlc3j7xa0rbjxa369f4sr0iw3gq58g8fmjjxbsjvfq14ychmg"; depends=[lazyeval]; }; rexpokit = derive2 { name="rexpokit"; version="0.26.6.7"; sha256="13zrr5qj96vh50mknlc2pl7gq1kx5ahwk3n9ij4xr67734x3mx1r"; depends=[Rcpp]; }; rextendr = derive2 { name="rextendr"; version="0.2.0"; sha256="0d5nkdphdlyyd9qi3dam16ag89b0h6n38q91pkp71n9xhb4ffrx8"; depends=[brio callr cli desc dplyr glue pkgbuild pkgload purrr rlang rprojroot stringi tibble withr]; }; rfPermute = derive2 { name="rfPermute"; version="2.5.1"; sha256="156vaxkjs5959bh4fh65zqfy8p7ag66abizx6n3wj6q078048jvj"; depends=[abind dplyr ggplot2 gridExtra magrittr randomForest rlang scales swfscMisc tibble tidyr]; }; rfUtilities = derive2 { name="rfUtilities"; version="2.1-5"; sha256="1anwvmxn3xrc1aqxl75rzlk4wby8l54rmkp0bgi8dgbz2l223xr0"; depends=[cluster randomForest]; }; - rfVarImpOOB = derive2 { name="rfVarImpOOB"; version="1.0.1"; sha256="16ivcnnzrgqzfzcbdyi10rwn8r8r0yyxyfpx25lxafb6pj3kxpvf"; depends=[binaryLogic dplyr ggplot2 ggpubr magrittr prob randomForest titanic]; }; rfacebookstat = derive2 { name="rfacebookstat"; version="2.5.0"; sha256="02l6iwb8nb4pc24ghczkjxh6icbr1s951hrpj021k5z624rmz9d8"; depends=[dplyr httr jsonlite pbapply purrr stringr tidyr tidyselect]; }; rfacts = derive2 { name="rfacts"; version="0.2.0"; sha256="15sh6q77gs11zipjbpf4lzgwdkskhvqvq595vcgrlyksyp71jizx"; depends=[digest fs tibble xml2]; }; rfieldclimate = derive2 { name="rfieldclimate"; version="0.1.0"; sha256="1s7awczna9dxdq97sr5fsbs4qv7rx4wi2z3inwdp33md1bvyq4i7"; depends=[digest dplyr httr jsonlite lubridate magrittr purrr tidyr]; }; - rfigshare = derive2 { name="rfigshare"; version="0.3.7"; sha256="1qgzn0mpjy4czy0pnbi395fxxx84arkg8r7rk8aidmd34584gjiq"; depends=[ggplot2 httpuv httr plyr RJSONIO XML yaml]; }; - rfinance = derive2 { name="rfinance"; version="0.1.0"; sha256="0xy4jw50vqbvicpwc3drzgg8ywgpdyxda7bqym52c76vsghcmq2d"; depends=[cli curl data_table dplyr glue httr janitor lubridate magrittr PerformanceAnalytics readr rvest stringr tibble TTR xml2 xts]; }; + rfigshare = derive2 { name="rfigshare"; version="0.3.8"; sha256="10shwl1y9220m7ld5w9fjsjzy5yg8myrz9cz97ps9z2bw7bvka5j"; depends=[ggplot2 httpuv httr RJSONIO XML yaml]; }; rfinterval = derive2 { name="rfinterval"; version="1.0.0"; sha256="1z7v0sbql6g2h3fr1268nj79rbx1d33hjfaraxhbikrjgb8mbp0w"; depends=[MASS ranger]; }; rfishbase = derive2 { name="rfishbase"; version="4.0.0"; sha256="0nq5ywsac1r65xjinvhb0v873q5wr3905s8j8fbrgkbn113i6f52"; depends=[contentid DBI dbplyr dplyr duckdb jsonlite magrittr memoise progress purrr readr rlang rstudioapi stringr tibble]; }; rfishdraw = derive2 { name="rfishdraw"; version="0.1.0"; sha256="0204s8jy6shr694hacrq4j0lia9l59rk8kc75sdw87c09q7kjld2"; depends=[ggplot2 jsonlite]; }; @@ -15617,15 +15262,15 @@ in with self; { rforensicbatwing = derive2 { name="rforensicbatwing"; version="1.3.1"; sha256="1i521h2nmlkhcxfxqir8jfjv0llwr6cz0ck5w6hzplk48044bn16"; depends=[Rcpp]; }; rfvimptest = derive2 { name="rfvimptest"; version="0.1.1"; sha256="15r98l3js5y6sjwr47hgp3sl0844a552l8r99kz6dvzk81ppya2d"; depends=[party permimp ranger]; }; rfviz = derive2 { name="rfviz"; version="1.0.1"; sha256="1pxr9bsqg27vgbngj89hhjq0gyzgdlg69rz6kzvvd8gclg42wisv"; depends=[loon randomForest]; }; - rgabriel = derive2 { name="rgabriel"; version="0.7"; sha256="1c6awfppm1gqg7rm3551k6wyhqvjpyidqikjisg2p2kkhmyfkyzx"; depends=[]; }; - rgbif = derive2 { name="rgbif"; version="3.7.1"; sha256="1yd0vwcg2jci9iqkddq16xshm1a4ay9rcf3bkkrasly7ny3larz7"; depends=[conditionz crul data_table ggplot2 jsonlite lazyeval magrittr oai R6 tibble wellknown whisker xml2]; }; - rgdal = derive2 { name="rgdal"; version="1.5-29"; sha256="0b8lvllqc12i4ilicsy5c6fzbjakl331h9f2mp2n3n9hw8f0m729"; depends=[sp]; }; + rgabriel = derive2 { name="rgabriel"; version="0.9"; sha256="1za8njmasl7kmmiqgxhr8k2p1kygkadkqgim9wgyjkcnzljg46kb"; depends=[]; }; + rgbif = derive2 { name="rgbif"; version="3.7.2"; sha256="0pwxm2v101vdggs9s9qri4pa56gddyn5g2qap25n341xpf09w3s6"; depends=[conditionz crul data_table ggplot2 jsonlite lazyeval magrittr oai R6 tibble whisker wk xml2]; }; + rgdal = derive2 { name="rgdal"; version="1.5-32"; sha256="1vbkyhw8nd7dw1r53qisphav31x6zvpbzilvnlvbjbj9hzhs90s5"; depends=[sp]; }; rgdax = derive2 { name="rgdax"; version="1.2.1"; sha256="01hpyyhb6jcw9w0q9h4ghgh4cbba27mfl9zdv4vv4ppakvl80czl"; depends=[digest httr jsonlite plyr RCurl]; }; rgee = derive2 { name="rgee"; version="1.1.3"; sha256="17y4n4vk4lzibxwcp94fhcnp21hllas1ab8bjdidk4hq5qxql96v"; depends=[cli crayon jsonlite leafem leaflet magrittr processx R6 reticulate rstudioapi]; }; rgen = derive2 { name="rgen"; version="0.0.1"; sha256="0gl82v09q1ha58wd1014s46wzkx1yf348bc7jkl6s4qdc6c4vsb8"; depends=[]; }; rgenius = derive2 { name="rgenius"; version="0.1.0"; sha256="1gpglnhicyv16ym224wzaw52w9xr63slm75wvidl3z14izzyy7ga"; depends=[doParallel dplyr foreach httr purrr rvest stringr tibble]; }; - rgenoud = derive2 { name="rgenoud"; version="5.8-3.0"; sha256="0p93wf6ghgz2nifxbscb6bhahh5jd2ba7nh1c2mb6fmbxnsi3swv"; depends=[]; }; - rgeoda = derive2 { name="rgeoda"; version="0.0.8-6"; sha256="1yfqsd89mxjq1wr407x17kih7mddwxa6sz8rqfqm3xawab7qm75f"; depends=[BH digest Rcpp sf]; }; + rgenoud = derive2 { name="rgenoud"; version="5.9-0.3"; sha256="0pxmisc0vsdchqaaxqcblnhhviizgcwhvsbklr3rq7vrmn6hlmii"; depends=[]; }; + rgeoda = derive2 { name="rgeoda"; version="0.0.9"; sha256="1yl2liin9fvcry2wi3223kq6xdxm6mkkkdjayp9gizllnhpf71z8"; depends=[BH digest Rcpp sf]; }; rgeolocate = derive2 { name="rgeolocate"; version="1.4.2"; sha256="08dps73sdlhsyzkykw3y9ckxazznymfsx63p9rcssghb2silw9xw"; depends=[httr Rcpp]; }; rgeopat2 = derive2 { name="rgeopat2"; version="0.3.9"; sha256="0l0sqkvjkzp4lmyk55l7zc02y04sa43cps47005gq8c38kyks45k"; depends=[readr sf stringr]; }; rgeoprofile = derive2 { name="rgeoprofile"; version="0.2.2"; sha256="1nk3qzwcvvq3n1da480zk047wl738fjyvarakm00wwrbnb3ax70j"; depends=[geosphere leaflet pals RANN raster sp spatstat_geom splancs]; }; @@ -15636,13 +15281,13 @@ in with self; { rglplus = derive2 { name="rglplus"; version="1.0"; sha256="1yr93laa48aj3rhnz8kih500kngynwnq2px1xnbgya9xsxyc2l5v"; depends=[rgl]; }; rglwidget = derive2 { name="rglwidget"; version="0.2.1"; sha256="0siqxn3gyl98i84p0yha821b4rdrp2i0942mkx819wnf7qwrpqcv"; depends=[rgl]; }; rgnparser = derive2 { name="rgnparser"; version="0.2.0"; sha256="01dmnyyprnayzn21vgdj9058l17kx8z4fisw4bp4lc6yif39q1r9"; depends=[jsonlite readr sys tibble]; }; - rgoogleads = derive2 { name="rgoogleads"; version="0.5.1"; sha256="1j51pkk747vdryiymhd7j3by5z2dz9qi7mnlyp7vc53j835syzlr"; depends=[cachem cli dplyr gargle httr jsonlite magrittr memoise pbapply purrr rappdirs rlang rlist rvest snakecase stringr tidyr withr]; }; + rgoogleads = derive2 { name="rgoogleads"; version="0.6.0"; sha256="16msq1mznfp21q1ys303f6rb78cqqd1bb7zwm51sqibh10kpr4bj"; depends=[cachem cli dplyr gargle httr jsonlite magrittr memoise pbapply purrr rappdirs rlang rlist rvest snakecase stringr tidyr withr]; }; rgoogleslides = derive2 { name="rgoogleslides"; version="0.3.2"; sha256="0h9gws1vcf0zdd21d8b65c2yz9kxppp3218h5lhd5iz879ajwa2i"; depends=[assertthat httr jsonlite R6]; }; rgovcan = derive2 { name="rgovcan"; version="1.0.3"; sha256="0b1fk7w3x60y0j74pglv14i0d76f13pzslghrday04qzkxy9smvd"; depends=[ckanr cli crayon crul tibble]; }; rgplates = derive2 { name="rgplates"; version="0.1.0"; sha256="1pxvccyq8m1dbq4rl0fi4vwp6k5w83gjwpga9r182z87cij97j43"; depends=[rgdal sp]; }; rgr = derive2 { name="rgr"; version="1.1.15"; sha256="1mrnmbh2crhkwdi37q59hx76afvkhgzgaacg3688q7jp23d58z6x"; depends=[fastICA MASS]; }; rgraph6 = derive2 { name="rgraph6"; version="2.0-1"; sha256="1gjw7pjjpz0n94rij6qnr3rdikk7hw3l9zf4hzsrry7fb3db5fv6"; depends=[Rcpp]; }; - rgrass7 = derive2 { name="rgrass7"; version="0.2-8"; sha256="1crgrc68j7ps1hwph9qyrpamvysqvvi8q1rf8mghrq87vd7g18z8"; depends=[XML]; }; + rgrass7 = derive2 { name="rgrass7"; version="0.2-10"; sha256="0si7ybh3avpv47n566d8gl002a59fbq53jhxx4vgk3dvfnfkl9la"; depends=[XML]; }; rgrassdoc = derive2 { name="rgrassdoc"; version="1.0.0"; sha256="18fcacf4v9n8cd27rc2lidwqm04151ya30pcs0bfhkssz80x0zds"; depends=[cli rlang rstudioapi xml2]; }; rgsp = derive2 { name="rgsp"; version="0.2.0"; sha256="1fk0k479srfr0f4a5abyzcrzwy9hr1v5xf0jgs36fbim9bh7njlc"; depends=[dplyr magrittr tibble]; }; rgtmx = derive2 { name="rgtmx"; version="0.1.4"; sha256="0zqab6zhfkc302nsa13nbi5bc45xwrhsrn42g2jnjw2xpnfk3ynz"; depends=[httr jsonlite]; }; @@ -15652,7 +15297,7 @@ in with self; { rhcoclust = derive2 { name="rhcoclust"; version="1.1.0"; sha256="1d9a29h4h6z04vjjdfi0sx7wpl8iw5zg2ymjpjlppzbbzzq2l8n2"; depends=[fields igraph]; }; rheroicons = derive2 { name="rheroicons"; version="0.3.2"; sha256="16rvsqlwp9j2v3zaqp37pwdjdj9ail21i4vicxq07c11x7r567gx"; depends=[htmltools shiny stringr]; }; rhierbaps = derive2 { name="rhierbaps"; version="1.1.3"; sha256="0i4sr2wwzzl8vki5zihnd8v4ia2kji09cmf4ld07b6k099g5xprr"; depends=[ape ggplot2 matrixStats patchwork purrr]; }; - rhino = derive2 { name="rhino"; version="0.6.4"; sha256="1ar50lrkmf93krxl7a9rcyn42bbi5y8k595d8b88p0m84ccb9dc0"; depends=[box cli fs glue lintr logger purrr renv sass shiny styler testthat withr yaml]; }; + rhino = derive2 { name="rhino"; version="1.0.0"; sha256="0dg2v2kzjzh0rlwvhpcih69830fn472acrbdxy5np6in9rpswk5k"; depends=[box cli config fs glue lintr logger purrr renv rstudioapi sass shiny styler testthat withr yaml]; }; rhli = derive2 { name="rhli"; version="0.0.2"; sha256="1mb6bizqkg7zd8nc5a81fw7d0y0vcv6zh6y28k9vikqmc5l1n21q"; depends=[]; }; rhmc = derive2 { name="rhmc"; version="1.0.0"; sha256="1m79f1hx404y0k8lk3n6jnzhr6wwrk83xiym68sq1zvj0wjqiqmw"; depends=[]; }; rhnerm = derive2 { name="rhnerm"; version="1.1"; sha256="1fkh2pr4kzvqvagdyjlyab7p591s913104gyq05q170gmvlpmiww"; depends=[]; }; @@ -15662,23 +15307,22 @@ in with self; { rhub = derive2 { name="rhub"; version="1.1.1"; sha256="05b4phrny85fshismspjbaz1h0klg1fpy4b309si94pnqffxaqx6"; depends=[assertthat callr cli crayon desc digest httr jsonlite parsedate pillar prettyunits processx R6 rappdirs rcmdcheck rematch tibble uuid whoami withr]; }; rhymer = derive2 { name="rhymer"; version="1.1.0"; sha256="00piml975chmmm3ipskzhfbbp5sq47yg5a78hsisssbzwwxsmbs0"; depends=[httr jsonlite]; }; rhype = derive2 { name="rhype"; version="0.2.0"; sha256="0grfa62d54x129l08v22ybfvjvvlzv5la5yxp9wi1a203r792xkr"; depends=[Matrix R6 RSpectra]; }; - ri = derive2 { name="ri"; version="0.9"; sha256="00y01n9cx95bjhdpnh7vi0xd5p6al3sxbjszbyxafn7m9mygmnhv"; depends=[]; }; ri2 = derive2 { name="ri2"; version="0.2.0"; sha256="0zadczx7awymn420hf15sci5z1hq5rpid866gpa1wmrhcyh177nh"; depends=[estimatr generics ggplot2 pbapply randomizr]; }; - riAFTBART = derive2 { name="riAFTBART"; version="0.2.0"; sha256="1i2npxr1riip4ac9vlm8bqf72pp3zvl9mhni6w3r1qh53hx8d3q7"; depends=[BART cowplot dbarts doParallel dplyr foreach ggplot2 magrittr MASS MCMCpack msm nnet stringr survival tidyr twang]; }; - ribd = derive2 { name="ribd"; version="1.3.1"; sha256="1an3cifgvw7rrsq1plfycpk1yhlsncn83s2f9xl52161iyljwj6g"; depends=[glue kinship2 pedtools slam]; }; + riAFTBART = derive2 { name="riAFTBART"; version="0.3.0"; sha256="1sqr0j64adrid8i7i0dwf5fw61jxxj0rdp99qsvm3j0bzci5n787"; depends=[BART cowplot dbarts doParallel dplyr foreach ggplot2 magrittr MASS MCMCpack msm nnet randomForest RISCA RRF stringr survival tidyr twang]; }; + ribd = derive2 { name="ribd"; version="1.4.0"; sha256="1n8hgyrxmcfdz2h5kc4hl8lwqw11h5k42z9kh57p387yvzi4xpnz"; depends=[glue kinship2 pedtools slam]; }; ricegeneann = derive2 { name="ricegeneann"; version="1.0.2"; sha256="0wxqp4pfdhvq4mwzjrqi3m9jiayk5bp1ha222mpm4qz1pl41cy9w"; depends=[riceidconverter]; }; riceidconverter = derive2 { name="riceidconverter"; version="1.1.1"; sha256="143f76v3k2q9ddcxf2nzvd04pjgy7p120ln0zkmxpal20c81dwq6"; depends=[dplyr]; }; riceware = derive2 { name="riceware"; version="0.4"; sha256="0pky0bwf10qcdgg9fgysafr35xbmnr9q0jbh56fawj99nbyj3m70"; depends=[random]; }; rich = derive2 { name="rich"; version="1.0.1"; sha256="0kasr9gb85qhngfayqy3fvrsr0a066krwxsx21nsxcnss0mrqygr"; depends=[boot vegan]; }; - ricu = derive2 { name="ricu"; version="0.5.1"; sha256="0p5lv9gwy3qkwagj946y60v6qwhpav3iqid4kgfbcxwczjybdapg"; depends=[assertthat backports cli curl data_table fansi fst glue jsonlite openssl prt readr rlang tibble vctrs]; }; - ridge = derive2 { name="ridge"; version="3.2"; sha256="08bl83rbv2rqd96383ymanqk2xy0yr6blklrj6rzi95zvw2xq6jp"; depends=[]; }; + ricu = derive2 { name="ricu"; version="0.5.2"; sha256="0facmjyky4a1q7hsk4pq2g20wx1d4qyz6ifbr2l006z0x39rj1wn"; depends=[assertthat backports cli curl data_table fansi fst jsonlite openssl prt readr rlang tibble vctrs]; }; + ridge = derive2 { name="ridge"; version="3.3"; sha256="1xb03ir706k2c3y2kpa4dvnz5i0qhm2ghm7syng0kalpdz7swbaw"; depends=[]; }; ridigbio = derive2 { name="ridigbio"; version="0.3.5"; sha256="0526nscxynl3857zybpms1wr3230qby29kxglm919pcdvpjb5kz5"; depends=[httr jsonlite plyr]; }; ridittools = derive2 { name="ridittools"; version="0.1"; sha256="1m9xbwxb277l4cd85qxmpw66gyavpwamgwr8kyf8vqarzfbwiilr"; depends=[]; }; riem = derive2 { name="riem"; version="0.3.0"; sha256="0a0nl1857x7qw8y8n5fq9hfhh1s25cihd2532zxfyvy14icwf72i"; depends=[httr2 jsonlite lubridate magrittr purrr rlang tibble]; }; rifle = derive2 { name="rifle"; version="1.0"; sha256="1r0cfj3vzndgiarl9sb38zmpnpm4p8v9l5cm9c1m6g2q9kvpgpbs"; depends=[MASS]; }; rigr = derive2 { name="rigr"; version="1.0.1"; sha256="0cjk03llklml3h6dmdahdbnxanynii64q664fax62dbkncxg5gqa"; depends=[Exact plyr sandwich survival tibble]; }; riingo = derive2 { name="riingo"; version="0.3.1"; sha256="1ww9ps0v1yga9dwb68crbhf56xw2svl7az95ifrdrswyyikj02vj"; depends=[crayon glue httr jsonlite purrr rlang tibble vctrs]; }; - rim = derive2 { name="rim"; version="0.5.0"; sha256="1q83w7wfivhhfhrph9zhnd02gmihj9h6vhm5rysbm435hxx9h834"; depends=[GlobalOptions knitr R6 Rcpp rmarkdown stringr]; }; + rim = derive2 { name="rim"; version="0.5.1"; sha256="0m0fvm3mmi9ydq759287yxr65v7hsmfxqryi67493g7mxyckqqi7"; depends=[GlobalOptions knitr R6 Rcpp]; }; rinat = derive2 { name="rinat"; version="0.1.8"; sha256="1jp19scgizfi3qp419k2nkkpjm8zcvcgj85zlsa27sd6fjv6vv6m"; depends=[curl ggplot2 httr jsonlite maps plyr sp]; }; ring = derive2 { name="ring"; version="1.0.3"; sha256="1ljmqq7mngxs59nri36w0cx6a6d85qsbk9v9698hfx9asicv398d"; depends=[R6]; }; ringostat = derive2 { name="ringostat"; version="0.1.3"; sha256="087l2r64hs9f864mnalh0pnbpb54z6gpkqhcb2zv7r8f5cpfggqj"; depends=[cli httr2 lifecycle readr stringr]; }; @@ -15686,14 +15330,14 @@ in with self; { rintrojs = derive2 { name="rintrojs"; version="0.3.0"; sha256="00l5mk80gj3xkbf3m1kip566ic98bhd88lh0bg69ybkpk4gifpyw"; depends=[jsonlite shiny]; }; rio = derive2 { name="rio"; version="0.5.29"; sha256="04jlrhyl0791yxwcpp1s8p1hhkljnijlc5iaxpk56h41w63k39lz"; depends=[curl data_table foreign haven openxlsx readxl tibble]; }; rioja = derive2 { name="rioja"; version="0.9-26"; sha256="02af6is38nakzr1hf9688n32m5glk1jyp2d9p4irn0mzk7r6r976"; depends=[mgcv vegan]; }; + riot = derive2 { name="riot"; version="1.0.0"; sha256="1iv83z21k2a8kclfma1cq4jns4zdpgjrzajcsfl105srvv55n0s2"; depends=[cli fs Rcpp readr rlang tibble]; }; ripserr = derive2 { name="ripserr"; version="0.1.1"; sha256="1rwsd1yi5vrzdscjgr27fw0d1a6nkc8g2w5hqgqijiwm25h4wl17"; depends=[Rcpp]; }; rise = derive2 { name="rise"; version="1.0.4"; sha256="12r7mbaxp9pjypbpjxlsbqg7spw80gjgm2w0lsvgvclffc50a6ni"; depends=[dplyr ggplot2]; }; - riskCommunicator = derive2 { name="riskCommunicator"; version="1.0.0"; sha256="0j4pdz4b0mq116yy9zyz4bf5avvp74q3a026b5hn7dr2xhvp4hb3"; depends=[boot dplyr ggplot2 gridExtra magrittr MASS purrr rlang tidyr tidyselect]; }; riskParityPortfolio = derive2 { name="riskParityPortfolio"; version="0.2.2"; sha256="1n2z1vhslrip209j79wm03wmwqdcnbm939sir2wfs5h2cfv126xk"; depends=[alabama Matrix nloptr quadprog Rcpp RcppEigen]; }; riskPredictClustData = derive2 { name="riskPredictClustData"; version="0.2.6"; sha256="0mvy9299pg374gvvqs9lmj2j0f3bzyy279kjpz7jq35hkgz5wif3"; depends=[gee Hmisc MASS mvtnorm]; }; riskR = derive2 { name="riskR"; version="1.1"; sha256="1qadfyb07idfw0bs006kb3917rzda83di6jmsr22941gv78z1wyv"; depends=[]; }; riskRegression = derive2 { name="riskRegression"; version="2022.03.22"; sha256="0ix0h91a9zsw3cl4pg14mmkzq71f2g9r4wakpixy0fp7bfj6c6jf"; depends=[cmprsk data_table doParallel foreach ggplot2 lattice lava mets mvtnorm plotrix prodlim Publish ranger Rcpp RcppArmadillo rms survival timereg]; }; - riskSimul = derive2 { name="riskSimul"; version="0.1"; sha256="0s2a1mn6g11m96gqscb916caj2aykcs3rkacpqcdnlyzryk1gsnb"; depends=[Runuran]; }; + riskSimul = derive2 { name="riskSimul"; version="0.1.1"; sha256="1yb2ipcqipsl92ighcpahjryir86pi59b1d3qiph7yraxbcx2909"; depends=[Runuran]; }; riskclustr = derive2 { name="riskclustr"; version="0.4.0"; sha256="1b5pjnfz6n716fn1va4kl4y3jzf48sm0i2xaxw0225vmmvq06d9g"; depends=[Matrix mlogit stringr]; }; riskmetric = derive2 { name="riskmetric"; version="0.1.2"; sha256="004a888y0srvaazq90l3v1q11qfl927h87420fs03zklkq27bvr1"; depends=[backports BiocManager covr cranlogs curl devtools httr memoise pillar pkgload tibble urltools vctrs xml2]; }; risksetROC = derive2 { name="risksetROC"; version="1.0.4"; sha256="1fh0jf8v536qzf1v3awx3f73wykzicli4r54yg1z926ccqb4h80l"; depends=[MASS survival]; }; @@ -15706,7 +15350,7 @@ in with self; { rivervis = derive2 { name="rivervis"; version="0.46.0"; sha256="19jsl5g46jcbc0kg47bsif1wrw9z9brgvwdcxqjc89shnx3hzzfv"; depends=[]; }; rivr = derive2 { name="rivr"; version="1.2-3"; sha256="10k4cqrlzcy5g0yqbkrzxfz0dwsnf8kgmfq011lj13kxpb38bpvy"; depends=[Rcpp]; }; rjade = derive2 { name="rjade"; version="0.1.1"; sha256="0wv1vpy8ql1r9ya5mfqxdj7jv5wk029g8hjjp0xqp8dm507vj11x"; depends=[V8]; }; - rjags = derive2 { name="rjags"; version="4-12"; sha256="041y4zfr50y96g0kl857jcba0a3gpdpk8qfn9fj8zxzbz71k87xr"; depends=[coda]; }; + rjags = derive2 { name="rjags"; version="4-13"; sha256="0cibz6xhmh86fh7ynmdgpmlchizi57pi6dpslgc2if17a56c6p7q"; depends=[coda]; }; rjazz = derive2 { name="rjazz"; version="0.1.7"; sha256="0wmqlpgcr98dvapfmdcph5mdv202rzzsvb06iy5sqvpizpg7pbsz"; depends=[RCurl]; }; rjdmarkdown = derive2 { name="rjdmarkdown"; version="0.2.0"; sha256="14ndhhxxx7jb9ljhfjxmdrl3kgb1zsrv00kznl2k50fwxx4z66f2"; depends=[kableExtra knitr magrittr RJDemetra]; }; rjdqa = derive2 { name="rjdqa"; version="0.1.1"; sha256="0d7jv3a2a7p7h6jnr5znln06x6m4mksb6cy44xdxir1pwcd1z6br"; depends=[plotrix RJDemetra XLConnect]; }; @@ -15720,18 +15364,16 @@ in with self; { rkafka = derive2 { name="rkafka"; version="1.3"; sha256="1h6f7wgz8qgh76p9w9vzcvcaa1piwnrx331gm1wxa1m31xs466jd"; depends=[rJava rkafkajars RUnit]; }; rkafkajars = derive2 { name="rkafkajars"; version="1.2"; sha256="1z1rn02ymzaq3v3pz206wlm78y591xa9780fwf77i4vfq2k9pxrz"; depends=[rJava RUnit]; }; rkeops = derive2 { name="rkeops"; version="1.4.2.2"; sha256="1b2sdbhx1ar1325mf1xgc561as9x8q8vjqslly9xms2h572c8yn3"; depends=[openssl Rcpp RcppEigen RhpcBLASctl stringr]; }; - rknn = derive2 { name="rknn"; version="1.2-1"; sha256="1x9r01314q0wgqwqzd7d13ycjzb4jzghzd3whgjvm2rsmnabai95"; depends=[gmp]; }; rkt = derive2 { name="rkt"; version="1.6"; sha256="1sqij8ivjrrb1lii3jwvgsx9zqv47ib1lhrh6zvvh5a67didwrih"; depends=[]; }; rkvo = derive2 { name="rkvo"; version="0.1"; sha256="0ci8jqf9nc8hb063nckxdnp0nlyr4ghby356lxm00anw44jlmw8v"; depends=[Rcpp]; }; rlang = derive2 { name="rlang"; version="1.0.2"; sha256="1k6pzl2x80pycpllvd8n1k62h5cfdwc0hsdwvbicrcxhdwz7rs4d"; depends=[]; }; rlas = derive2 { name="rlas"; version="1.5.3"; sha256="02wnlncfgk9chm63q07csw38lzxir7hlwvlprnhkmdgmyas8yh1g"; depends=[BH data_table Rcpp]; }; rlc = derive2 { name="rlc"; version="0.4.1"; sha256="1znx2749m9af3jq3avxf50amkhzvimr5ybwmk4g9vhwka86c3vqk"; depends=[hwriter jrc jsonlite plyr R6 stringr]; }; rlcv = derive2 { name="rlcv"; version="1.0.0"; sha256="00fz949jabbzci22yjlhc7bh4j2h44llplcrgsrbi3h97lrg7hc0"; depends=[statmod]; }; - rld = derive2 { name="rld"; version="1.0"; sha256="1glv4q25z14hcwifwg623h77p4awpsn3nk843pnph4sb3p5qbmn3"; depends=[emdbook MASS survival]; }; rle = derive2 { name="rle"; version="0.9.2"; sha256="0sagl0jggg40lihzy7pfq4593rfvc3b3f7g6ggi85s7n18qvwg40"; depends=[]; }; rleafmap = derive2 { name="rleafmap"; version="0.2"; sha256="1i2qczipg7lr6fl35lcl896r54jia7libxx83darrfzc1hd9sdcq"; depends=[knitr raster sp]; }; rlecuyer = derive2 { name="rlecuyer"; version="0.3-5"; sha256="09mniai7v8gapr6hd3zm8sm3vi1zcyhgym389904ykb2yx7l68s7"; depends=[]; }; - rlemon = derive2 { name="rlemon"; version="0.1.0"; sha256="15m3bijs80jn5w6jdaxivj8ix7d5zfwshxlxip9walkzqp963jzm"; depends=[Rcpp]; }; + rlemon = derive2 { name="rlemon"; version="0.2.0"; sha256="186kx2mrbq8fpbzpibbbvzh92f0wsmmz2yvvcg6wd805by3r4rz0"; depends=[Rcpp]; }; rless = derive2 { name="rless"; version="0.1.1"; sha256="0ham8kf2hbswrcnc5i5b3svywdwq3kwp9n66n4k9sllahl4x9jdn"; depends=[V8]; }; rlfsm = derive2 { name="rlfsm"; version="1.1.1"; sha256="0pv6136b1b5q46q75msjc6bzzx1wcq23313kv1b3bvpwpiyw52gn"; depends=[doParallel foreach ggplot2 plyr Rcpp Rdpack reshape2 stabledist]; }; rliger = derive2 { name="rliger"; version="1.0.0"; sha256="1gqdwmy073sg48id015q02bx20xsqyc6jpbw4nym3c09cqz681dr"; depends=[cowplot doParallel dplyr FNN foreach ggplot2 ggrepel hdf5r ica irlba Matrix mclust patchwork plyr psych RANN Rcpp RcppArmadillo RcppEigen RcppProgress riverplot rlang Rtsne uwot]; }; @@ -15739,20 +15381,19 @@ in with self; { rlmDataDriven = derive2 { name="rlmDataDriven"; version="0.4.0"; sha256="1fhh2siafpqmvpxi2piccxvvn5n38s5d6as6iyn43rgpsslswc8g"; depends=[MASS tseries]; }; rlme = derive2 { name="rlme"; version="0.5"; sha256="0p26mw4g12l279lh80vqcjs3pvjr759ap2m622490k1i2ralxzif"; depends=[magic MASS mgcv nlme quantreg Rcpp robustbase stringr]; }; rlog = derive2 { name="rlog"; version="0.1.0"; sha256="0g9gjf37gly68drm8a8zcnwxcigm2djsm3angglzwd04mmlkgwpy"; depends=[]; }; - rly = derive2 { name="rly"; version="1.6.2"; sha256="1bb55g3rip524dccaxvahjxsi2cimxqvzc897pxplv3bb10pm0r2"; depends=[futile_logger R6]; }; + rly = derive2 { name="rly"; version="1.7.4"; sha256="044rpc1gs1jhm2hlmdmwinf24qvh2d0d6kg55zicmwdcdf8gnn8z"; depends=[futile_logger R6]; }; rmBayes = derive2 { name="rmBayes"; version="0.1.13"; sha256="1w600pzlz5kvdiqmz2g6gfsvifwkbm9b7j90cyg4vxy7fjpyxslk"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; rma_exact = derive2 { name="rma.exact"; version="0.1.0"; sha256="1igs92la79akyqj84ah23lpcay7i33k7zgzcwm7sii782fhirivx"; depends=[abind metafor]; }; - rmaf = derive2 { name="rmaf"; version="3.0.1"; sha256="0w247mamwgibr5576p5c2lzaiz2lv2c25n7gw9q99s7rc4bps7j7"; depends=[]; }; rmake = derive2 { name="rmake"; version="1.1.0"; sha256="00qlki2vps505nxzmfykf1iyq4b0y20nb75hbfcj63ap46z7zk3c"; depends=[assertthat pryr rmarkdown visNetwork]; }; rmangal = derive2 { name="rmangal"; version="2.1.0"; sha256="105jnf7583zmmn7w8cziiypga7h5imyp73wnn2jzdblg71lzwqn7"; depends=[httr igraph jsonlite memoise purrr]; }; - rmapshaper = derive2 { name="rmapshaper"; version="0.4.5"; sha256="0mfmip9ncg60nciv6mf12z15wfyffd2shhclx78l0801295siybc"; depends=[geojsonio geojsonlint jsonlite readr sf sp V8]; }; + rmapshaper = derive2 { name="rmapshaper"; version="0.4.6"; sha256="03gfnxwky292ma0s2wcvmpym11qlrkn82nqxpfk5cbrc27fn8m0j"; depends=[geojsonio geojsonlint jsonlite readr sf sp V8]; }; rmapzen = derive2 { name="rmapzen"; version="0.4.3"; sha256="1n44l4sj6s78nr3hqidabkyg9pradk9c1mqfvzhanj2nrfdrwnqj"; depends=[assertthat digest dplyr geojsonio httr jsonlite maps maptools purrr rgdal sf sp tibble tidyr]; }; rmarchingcubes = derive2 { name="rmarchingcubes"; version="0.1.3"; sha256="0cdmy728irmbd40xsc2k4r2g8am7s72ks7cw465fa92ml2xa6iq8"; depends=[Rcpp RcppArmadillo]; }; rmargint = derive2 { name="rmargint"; version="2.0.2"; sha256="0irq5114dd8pngl6k13r2rrsivijiqfldm6mby0q5a9wrj2vmwc9"; depends=[]; }; - rmarkdown = derive2 { name="rmarkdown"; version="2.13"; sha256="0i07p3dxxv2s2a4xmyhc3qxmwg86vakniq5jjjclmcq2sahvw5vj"; depends=[bslib evaluate htmltools jquerylib jsonlite knitr stringr tinytex xfun yaml]; }; + rmarkdown = derive2 { name="rmarkdown"; version="2.14"; sha256="081j1hpxcwadn606ch5lq279s66c1b0f0mjvap7yimnrljpigv79"; depends=[bslib evaluate htmltools jquerylib jsonlite knitr stringr tinytex xfun yaml]; }; rmatio = derive2 { name="rmatio"; version="0.16.0"; sha256="1ar8736x5ww4cky4qp8fxlwa7p00yycs31ryrqsmbwhwvg2ddlkk"; depends=[Matrix]; }; rmcfs = derive2 { name="rmcfs"; version="1.3.5"; sha256="0rbq2b9fw1x44v7ifxp8qgp4yciinw2sw9mqp4ms5jsxznpi2pi6"; depends=[data_table dplyr ggplot2 gridExtra igraph reshape2 rJava stringi yaml]; }; - rmcorr = derive2 { name="rmcorr"; version="0.4.5"; sha256="018d3rfh2688yqkarcmxqqfbmmzcmj6q3hwinns4kj6xnnlmv1xr"; depends=[psych RColorBrewer]; }; + rmcorr = derive2 { name="rmcorr"; version="0.4.6"; sha256="1ypz2b8lzqdvn82pd5k1yqi26d96fm9pw9p219c5fdgx8gvnwhml"; depends=[psych RColorBrewer]; }; rmdHelpers = derive2 { name="rmdHelpers"; version="1.2"; sha256="1ahzbs8z7wvh1dwbq1kq8wrjrknxi2gck63k70gj0swjvgk0ih5r"; depends=[dplyr knitr]; }; rmda = derive2 { name="rmda"; version="1.6"; sha256="1m7j79jwii9la47w34ka3yl1n7nql8pfn32if0aycn4yw5sy8dmc"; depends=[caret MASS pander reshape]; }; rmdcev = derive2 { name="rmdcev"; version="1.2.4"; sha256="0pdw390fknivnfkrzlk1rcv34prgnang50rfgmfpm2g9l6kjckxp"; depends=[BH dplyr Formula purrr Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tibble tidyr]; }; @@ -15768,13 +15409,14 @@ in with self; { rmi = derive2 { name="rmi"; version="0.1.1"; sha256="1y0395l9lhskdrk3x9ps2dmv0sznsba0n6a9fmma33dc9dhywgf9"; depends=[BH Rcpp RcppArmadillo]; }; rminer = derive2 { name="rminer"; version="1.4.6"; sha256="1xydc43is756cy4vsm4k4micj88hhqgyrhb8cmvgv1y8zfrzg2qz"; depends=[adabag Cubist e1071 glmnet kernlab kknn lattice MASS mda nnet party plotrix pls randomForest rpart xgboost]; }; rminizinc = derive2 { name="rminizinc"; version="0.0.8"; sha256="0yyg8ikdlksxlsc8ms4gb8dvpdjk26np6cpm5a7rjp748x8is6qx"; depends=[checkmate R6 Rcpp rjson rlang rlist]; }; + rminqa = derive2 { name="rminqa"; version="0.1.1"; sha256="04msdk96qqpk6sshqiinfds42ry30k96mpncbkxg25v0yqa21h72"; depends=[Rcpp RcppArmadillo]; }; rmio = derive2 { name="rmio"; version="0.4.0"; sha256="1gkd8nkqyfpkp6nvqb7c698difak5ymih3vy6njzqd3gwdp09mhy"; depends=[bigassertr ff]; }; rmonad = derive2 { name="rmonad"; version="0.7.0"; sha256="1vjx8kk57xk7c2a05c6kn75n17842ya7j41hqj3wmgq8yvaxrngx"; depends=[digest glue igraph magrittr pryr]; }; rmoo = derive2 { name="rmoo"; version="0.1.7"; sha256="0dg6y9zvky5dy0b9948xdpg9cfbsczk0hm98lnl6wnikbvphijv4"; depends=[cdata dplyr ecr ggplot2 plotly reshape2]; }; rmpw = derive2 { name="rmpw"; version="0.0.4"; sha256="1a49rvdwvmccv4gfir48fw0b9jyrpc2q9zfyk5j9b7nxsx6x7abl"; depends=[gtools MASS]; }; - rms = derive2 { name="rms"; version="6.2-0"; sha256="1di4xvsx0rwkr77nfqiysbg4qf699199xqil70i39d4zwfzqrm8h"; depends=[cluster digest ggplot2 Hmisc htmlTable htmltools lattice MASS multcomp nlme polspline quantreg rpart SparseM survival]; }; + rms = derive2 { name="rms"; version="6.3-0"; sha256="1yfk800q4mgmrjkh0hqjkiv907sr1bi1jaigrj8l6pmg1mkynhbc"; depends=[cluster digest ggplot2 Hmisc htmlTable htmltools lattice MASS multcomp nlme polspline quantreg rpart SparseM survival]; }; rms_gof = derive2 { name="rms.gof"; version="1.0"; sha256="1n0h3nrp11f2x70mfjxpk2f3g4vwjaf4476pjjwy49smxxlxwz82"; depends=[]; }; - rmsb = derive2 { name="rmsb"; version="0.0.2"; sha256="1q9f539kgrj84117zlqlvlgv8hhk29lr504jznw7im49jczqvwcq"; depends=[BH cluster digest ggplot2 Hmisc knitr loo MASS Rcpp RcppEigen RcppParallel rms rstan rstantools StanHeaders survival]; }; + rmsb = derive2 { name="rmsb"; version="0.1.0"; sha256="1ng6c2abkw3r78l3m4k2648lmra0f6a7jy5nn8av1v1hbvisrg9n"; depends=[BH cluster digest ggplot2 Hmisc knitr loo MASS Rcpp RcppEigen RcppParallel rms rstan rstantools StanHeaders survival]; }; rmsfact = derive2 { name="rmsfact"; version="0.0.3"; sha256="05s23rfs9prr2ia3h4h9y614xhv91lbgppgf3mrrssxkwz220kd5"; depends=[]; }; rmsfuns = derive2 { name="rmsfuns"; version="1.0.0.1"; sha256="18bpj7xh3kc7pl6ivi3cripam26bsaf9r9099cjf22qndvy18hb6"; depends=[dplyr magrittr PerformanceAnalytics purrr readr tbl2xts xts zoo]; }; rmt = derive2 { name="rmt"; version="1.0"; sha256="165cqnwqr0dx7b8dgq7xlfk4j55p9l6dr5b2rzyvfy5l23k4kckn"; depends=[]; }; @@ -15788,14 +15430,14 @@ in with self; { rnbp = derive2 { name="rnbp"; version="0.2.1"; sha256="0vphfxb262jryvvs48l21q3vxqicj51az0li38axg1mslshw0y4g"; depends=[curl httr jsonlite]; }; rncl = derive2 { name="rncl"; version="0.8.6"; sha256="1ywgwqn82z8h6zpcxxq4hgngdpfa6dj0lr7bfq4cwfml9z075jgw"; depends=[progress Rcpp]; }; rneos = derive2 { name="rneos"; version="0.4-0"; sha256="07b3vb0h36ilwb8iylgppl8wpi84f583frmscpj236s1aihqwrmx"; depends=[RCurl XML]; }; + rnetcarto = derive2 { name="rnetcarto"; version="0.2.5"; sha256="169r1b2wvz13n7fcrvl80bidw6cwhng3d9vdji64g5wx1nv27arc"; depends=[]; }; rngSetSeed = derive2 { name="rngSetSeed"; version="0.3-2"; sha256="00mqjjkhbnvxqkf1kz16gipsf98q62vmhx9v8140qs7c4ljbhc3a"; depends=[]; }; rngWELL = derive2 { name="rngWELL"; version="0.10-7"; sha256="0f1dxxaimfb0fww8ym9ciqf6q760ai46wxldl37m5mfpd57ca00c"; depends=[]; }; rngtools = derive2 { name="rngtools"; version="1.5.2"; sha256="0kd7x214cqw7hzpmk1iqy1bn7j6x0ady0yz2hsdbclbq9k57d33z"; depends=[digest]; }; - rngwell19937 = derive2 { name="rngwell19937"; version="0.6-0"; sha256="0m6icqf7nckdxxvmqvwfkrpjs10hc7l8xisc65q8iqpnpwl5p2f6"; depends=[]; }; rnmamod = derive2 { name="rnmamod"; version="0.2.0"; sha256="0dncj3dldb4d1j5m1dypk9lyg5jb2m2fi1k7p9sl52a6bfadcbb4"; depends=[coda dplyr fdrtool gemtc ggfittext ggplot2 ggpubr ggrepel knitr MASS mcmcplots netmeta pcnetmeta R2jags reshape2 scales writexl]; }; rnn = derive2 { name="rnn"; version="1.5.0"; sha256="109h3zfpyl3jir27vq1v6z5b3ffjszxvdygq6l787apl5n3j8par"; depends=[shiny sigmoid]; }; rnoaa = derive2 { name="rnoaa"; version="1.3.8"; sha256="12mrvvq93535pk9g52h0sl5wdlw0wpqdchghi24fjdr62r44p5sp"; depends=[crul data_table dplyr geonames ggplot2 gridExtra hoardr isdparser jsonlite lubridate scales tibble tidyr tidyselect XML xml2]; }; - rnpn = derive2 { name="rnpn"; version="1.2.4"; sha256="0lq9c5in0pf3km6zvfnn71wbh34lk3hgav0b9waspmzsgki8fvl1"; depends=[curl data_table httr jsonlite magrittr plyr raster rgdal sp tibble XML]; }; + rnpn = derive2 { name="rnpn"; version="1.2.5"; sha256="02ka6ibdm9sbx3cffdh1lvr8555iqq3w74cs60djivp56gsvy009"; depends=[curl data_table httr jsonlite magrittr plyr raster rgdal sp tibble XML]; }; rnr = derive2 { name="rnr"; version="0.2.1"; sha256="1z9bab3qmq8d79bcvjzldbxlah2w8mqp2ifd0cn1348dafwa0dhi"; depends=[assertthat purrr]; }; rnrfa = derive2 { name="rnrfa"; version="2.0.4"; sha256="0sy64bgb94ksgcy37kmj61iphf66i0jpx0qlrcsr24zr92syc1n2"; depends=[curl ggmap ggplot2 httr jsonlite lubridate rgdal sp tibble zoo]; }; roadoi = derive2 { name="roadoi"; version="0.7.2"; sha256="1q2mkd7r5aqvahx7rrzv58nd6d13gvlw7kjidqhm7z89na94pn8w"; depends=[dplyr httr jsonlite miniUI plyr purrr rlang shiny tibble tidyr]; }; @@ -15805,14 +15447,15 @@ in with self; { robber = derive2 { name="robber"; version="0.2.2"; sha256="053yiwjlsg7z9p5l60wddm1wf5wni54a28yp6x4hbfkgaazvby02"; depends=[blockmodels ggplot2 GREMLINS igraph magrittr pammtools partitions purrr]; }; robcbi = derive2 { name="robcbi"; version="1.1-3"; sha256="0rj732qdd0wd9d9pxldnsw5rif5d7wz327iydvxcf5x8lgvk42jd"; depends=[robeth]; }; robcor = derive2 { name="robcor"; version="0.1-6"; sha256="1hw8simv93jq8a5y79hblhqz157wr8q9dzgm0xhvvv5nkzyqkpzf"; depends=[]; }; - robcp = derive2 { name="robcp"; version="0.3.5"; sha256="06jr9abvy238ajymwwja5z8x6sjrjxd660w07sallq3wxly4k9mi"; depends=[Rcpp]; }; + robcp = derive2 { name="robcp"; version="0.3.6"; sha256="13isf951z4jgy2gnbn9wp76r9bfnig88z2yb63lpv1lxaakb873q"; depends=[Rcpp]; }; roben = derive2 { name="roben"; version="0.1.0"; sha256="18k0h1y2xhvdssg28b9s4whn3kcbdgkz55dp1y3rrczw8xrm54mm"; depends=[glmnet Rcpp RcppArmadillo]; }; robeth = derive2 { name="robeth"; version="2.7-6"; sha256="1x0hzgq7jwl83wwmy581ia8009v0j95aksnr5ywpflnqm76rj6v2"; depends=[]; }; robets = derive2 { name="robets"; version="1.4"; sha256="0lvzfpv6569pjysblhadd05sglx0qvyr9wipb9cpiya4a1992n61"; depends=[forecast Rcpp]; }; robfilter = derive2 { name="robfilter"; version="4.1.2"; sha256="0mvpaf6g694b7175bl3yr6lxbwla4pwp7g4y34qb4klgl5n3nw03"; depends=[lattice MASS robustbase]; }; + robflreg = derive2 { name="robflreg"; version="1.0"; sha256="0b0iwpn2rdwydwzabf2b5030fma78gjy9640ky0xhhpyfvm28z3z"; depends=[expm fda fda_usc goffda MASS mvtnorm pcaPP plot3D robustbase]; }; robis = derive2 { name="robis"; version="2.8.2"; sha256="0nlvp9w9j2kyv0rrsjkzr3sj77ciz8ink3yr615sjc69iqic34aw"; depends=[curl data_table dplyr ggplot2 httpcache httr jsonlite leaflet mapedit purrr rlang sf stringr tibble tidyr tidyselect xml2]; }; robmed = derive2 { name="robmed"; version="0.10.1"; sha256="0cs7wy19iqn0d5rfjrv3wpjh46gvvpad4ckmz4hz8g0knhq96zdj"; depends=[boot ggplot2 quantreg robustbase sn]; }; - robmixglm = derive2 { name="robmixglm"; version="1.2-2"; sha256="117dhnnj55hihpzim45dw3cjm4ma6w21d8j77fybyri2bmpvlypa"; depends=[actuar bbmle boot doParallel doRNG fastGHQuad foreach MASS numDeriv Rcpp VGAM]; }; + robmixglm = derive2 { name="robmixglm"; version="1.2-3"; sha256="18xcbxj3jl9w5i74vy5i2ha7zsln4sgh8anv9n7haa7zilflvrx3"; depends=[actuar bbmle boot doParallel doRNG fastGHQuad foreach MASS numDeriv Rcpp VGAM]; }; robnptests = derive2 { name="robnptests"; version="1.0.0"; sha256="0bk3ngwav3r00lf2lb8hq2h578mkfc48gcm845lyxyn7i87vglgg"; depends=[checkmate gtools Rdpack robustbase statmod]; }; robomit = derive2 { name="robomit"; version="1.0.6"; sha256="1yma6m4bxy3hikc9kx7mslqgq1fpi4my7qij9pz77ag836r9hcxm"; depends=[broom dplyr ggplot2 plm tibble tidyr]; }; robotstxt = derive2 { name="robotstxt"; version="0.7.13"; sha256="1x5sachf7g5c2aj1mg3z2lf60723k1ad80bdr89szkgi92jkfal7"; depends=[future future_apply httr magrittr spiderbar stringr]; }; @@ -15820,7 +15463,7 @@ in with self; { robregcc = derive2 { name="robregcc"; version="1.1"; sha256="06fapmc3jfrfdqvz02jr12dk1d5iw6s3mcb13jz1nm2bybw6r04a"; depends=[magrittr MASS Rcpp RcppArmadillo]; }; robsel = derive2 { name="robsel"; version="0.1.0"; sha256="0vf9hry11hf6bi4pz18c6gh9janx0v6shm2m14kckscvh80z3k5b"; depends=[glasso Rcpp RcppEigen]; }; robservable = derive2 { name="robservable"; version="0.2.1"; sha256="0v4d6yavs58nvwy9bz8wgmm1qb2cqsxkj7rbwngwfzr07ryznd2s"; depends=[htmlwidgets jsonlite]; }; - robslopes = derive2 { name="robslopes"; version="1.1.0"; sha256="0nlz67nmrb9p1a71xnfdfx8c92h0aag68x4xxlvk464nf6s661qv"; depends=[Rcpp RcppArmadillo]; }; + robslopes = derive2 { name="robslopes"; version="1.1.1"; sha256="17yal203qghf044mcwvgl2bcq2268wb9y3qjigh1qs2cdzgbdv29"; depends=[Rcpp RcppArmadillo]; }; robsurvey = derive2 { name="robsurvey"; version="0.2"; sha256="0ipkl3bvnymkrh1apnpidxwxpb1xmw5s66wwxs0kbwvsp6l6qh26"; depends=[KernSmooth survey]; }; robumeta = derive2 { name="robumeta"; version="2.0"; sha256="1ynlfxlzh442jd1cf02j0f948m16d536a30gb4bf7208baqri1vg"; depends=[]; }; robust = derive2 { name="robust"; version="0.7-0"; sha256="1fc4h19b7gn9ya2j2ia8vfgsycwlyc23frj54k11dr45w4qaq6jy"; depends=[fit_models lattice MASS robustbase rrcov]; }; @@ -15847,7 +15490,7 @@ in with self; { rocTree = derive2 { name="rocTree"; version="1.1.1"; sha256="1hd5v47gymffg5829swpd38xscm4vq75d46fibwkrr7jp9iy37ra"; depends=[data_tree DiagrammeR flexsurv ggplot2 MASS Rcpp RcppArmadillo survival]; }; rocc = derive2 { name="rocc"; version="1.3"; sha256="1j15l28c7kv7x850ycjprqi5gpbsl6wfv97h9lbrx11q5l4r9ivb"; depends=[ROCR]; }; roccv = derive2 { name="roccv"; version="1.2"; sha256="18kq2gzcbz97dw168xppql8k3slpkfl8yv1d8ac48damlhvipif1"; depends=[glmnet pROC]; }; - rock = derive2 { name="rock"; version="0.5.1"; sha256="1abyr9i2p1xjll6cry8hmbgskwr10ki4r0zw29qg8iz2rpxl0zpp"; depends=[data_tree DiagrammeR DiagrammeRsvg dplyr ggplot2 glue htmltools markdown purrr yaml yum]; }; + rock = derive2 { name="rock"; version="0.5.4"; sha256="1c2kb5w2k9yjhnclqqj2005q960qff7p7d9fhcxirfq4w2sxcxih"; depends=[data_tree DiagrammeR DiagrammeRsvg dplyr ggplot2 glue htmltools markdown purrr yaml yum]; }; rockchalk = derive2 { name="rockchalk"; version="1.8.151"; sha256="17mfaxn3gj0vac5wdmsjj2z2668cszbpvan7hnxp7ic9bvsm1w2y"; depends=[carData kutils lme4 MASS]; }; rocker = derive2 { name="rocker"; version="0.3.0"; sha256="07vlfhp3m8k4ykfmd513ryqk0005mpj2qi64wrpkcg760rbs6wjv"; depends=[DBI R6 sodium]; }; rockr = derive2 { name="rockr"; version="1.0.0"; sha256="190xaxcbb7miqw5mxyfqqlb2vzacifc8a7a3cqfdlpxra4d4jc25"; depends=[httr jsonlite mime progress]; }; @@ -15861,13 +15504,14 @@ in with self; { roger = derive2 { name="roger"; version="0.99-2"; sha256="0h6ym9s3rjyj6a2rbsmr1g9bxxn0bfds0cqfqs8m4bpy9sd8jysi"; depends=[]; }; roistats = derive2 { name="roistats"; version="0.1.1"; sha256="1278cap5il85s1qls3sc0f4gqq2hi80442qidnsc6d8r3l4ba3fr"; depends=[dplyr magrittr purrr rlang tidyr]; }; roll = derive2 { name="roll"; version="1.1.6"; sha256="1crzr0kqdls08n6i3769zrxbxvh2m4hv5k3xi6ky6ps8hhicwqc9"; depends=[Rcpp RcppArmadillo RcppParallel]; }; - rollRegres = derive2 { name="rollRegres"; version="0.1.3"; sha256="1rf6hdbndindq6kr5yzyqq4jy1c11shfdvjb8mwm957dd0kbs3rx"; depends=[checkmate Rcpp RcppArmadillo]; }; + rollRegres = derive2 { name="rollRegres"; version="0.1.4"; sha256="1q1xs43c860fqv5anfdv0zdb5s8n794yvhn1c7px1kdh2g0jbjp7"; depends=[checkmate Rcpp RcppArmadillo]; }; rollbar = derive2 { name="rollbar"; version="0.1.0"; sha256="1q2ym0vkgbdnibxmwx0bp9c20g3bm8fzwwgs3j4bxg1ydg3gnkj4"; depends=[httr]; }; rolldown = derive2 { name="rolldown"; version="0.1"; sha256="1awr8lcxz7y9mjhia4p85jvixc72gj525gk2jjl13njgq6shp0b5"; depends=[bookdown htmltools jsonlite]; }; rollinglda = derive2 { name="rollinglda"; version="0.1.1"; sha256="1sk6szcqsr3nbkwnsdjpsk1fcyk7s4h2zsm02rmbi1h0r0yxb0zr"; depends=[checkmate data_table ldaPrototype lubridate tosca]; }; rollmatch = derive2 { name="rollmatch"; version="2.0.2"; sha256="1bm1yc2z9byj4m9gz0il47y8drd3qzsb5lwb22a22axy306lqfqj"; depends=[dplyr magrittr]; }; roloc = derive2 { name="roloc"; version="0.1-1"; sha256="0xynj12gp010c23f6ll9p343vwgxwa22s771p1w2pi65cj2ixhas"; depends=[colorspace]; }; rolocISCCNBS = derive2 { name="rolocISCCNBS"; version="0.1"; sha256="100jh5m2c1zp5wg3wd4y2i47dzx1j0g6lfwyqmwk4bz99yzzz5am"; depends=[colorspace roloc]; }; + rolog = derive2 { name="rolog"; version="0.9.4"; sha256="05a8wf2nkw3nssys9xbf40ihgbw4x6vjmzp2dcfsqxhr0wjmd7km"; depends=[Rcpp]; }; rolr = derive2 { name="rolr"; version="1.0.0"; sha256="04nm4q0mlr4w6jb0frykzlyknfn3gn02ysqr5ll5jch6wawichy2"; depends=[survival]; }; romic = derive2 { name="romic"; version="1.0.0"; sha256="08iqk71bn4yjxnbwj99jbrz3028jjs8f07ns9r9iaj6byyxv4vd1"; depends=[checkmate dplyr ggplot2 glue purrr readr reshape2 rlang shiny stringr tibble tidyr]; }; rootSolve = derive2 { name="rootSolve"; version="1.8.2.3"; sha256="182bb727sgqi5f3pzmw8jnn328wdjrgj9lfvg49gv8s22rjd3cxm"; depends=[]; }; @@ -15898,7 +15542,7 @@ in with self; { roundhouse = derive2 { name="roundhouse"; version="0.0.2"; sha256="0xx2wai9pdq0g7x8xmwlf48wxv4v18c7ymzvzxpvw1gggppmbk69"; depends=[]; }; routr = derive2 { name="routr"; version="0.4.0"; sha256="1vswq7vm80nwb50grr4cs290kbq5lx9b19dq0c2wlp9d2dxk50si"; depends=[assertthat digest httpuv R6 reqres stringi uuid]; }; roxut = derive2 { name="roxut"; version="0.4.0"; sha256="1ciflhmavl24wk4kjbilmm70q6z8i02m36x4pyh4m3czhnpyyv03"; depends=[roxygen2]; }; - roxygen2 = derive2 { name="roxygen2"; version="7.1.2"; sha256="1zf55wywlpy7mk7zfyi3s9fhhg1m9kvafzj46iqw5cbvnlg3ssdk"; depends=[brew commonmark cpp11 desc digest knitr pkgload purrr R6 rlang stringi stringr xml2]; }; + roxygen2 = derive2 { name="roxygen2"; version="7.2.0"; sha256="12s436jn7aagjpc2lnlrhzwqgsdl8lbbwhkddih6rnxrczawzgrf"; depends=[brew cli commonmark cpp11 desc digest knitr pkgload purrr R6 rlang stringi stringr withr xml2]; }; roxygen2md = derive2 { name="roxygen2md"; version="1.0.0"; sha256="1gvrfy0sk5qi8d93zxj5f7xgnnw0w38zyxdik4ckf0pkk0zdm27a"; depends=[desc devtools enc rex rlang tibble usethis withr]; }; roxytest = derive2 { name="roxytest"; version="0.0.1"; sha256="166m0pklgryh3vildg0bvzh9gs3p71sf61ivgkvkvyy9vhvnp3jf"; depends=[roxygen2]; }; royston = derive2 { name="royston"; version="1.2"; sha256="1rywc89qzx0hldbq10201bjdhz60pq2gmgd9b9j52mza3w4canjz"; depends=[moments nortest]; }; @@ -15911,7 +15555,6 @@ in with self; { rpartScore = derive2 { name="rpartScore"; version="1.0-1"; sha256="15zamlzbf6avir8zfw88531zg5c0a6sc5r9v5cy9h08ypf34xf4y"; depends=[rpart]; }; rpatrec = derive2 { name="rpatrec"; version="1.0.1"; sha256="0zj461frf6n5s97zq7r52q0blsn2xq2759impgz6v4pr87gmq0si"; depends=[np]; }; rpca = derive2 { name="rpca"; version="0.2.3"; sha256="135q3g8jmn9rwamrc9ss45cnbfyw8kxcbrf0kinw8asz70fihj9z"; depends=[]; }; - rpcdsearch = derive2 { name="rpcdsearch"; version="1.0"; sha256="17g3x15qgv2hamlj451sb88i83n8svw5vnmjpijp5cnn5d1jx0d6"; depends=[assertthat combinat dplyr stringr xlsx]; }; rpdo = derive2 { name="rpdo"; version="0.3.1"; sha256="0yhg858i5a6s68000a74l4gldycbfmcwcvkk5zhjqzpxzdm7pqb2"; depends=[chk lifecycle]; }; rpf = derive2 { name="rpf"; version="1.0.11"; sha256="1yr1i7kswq57mcxv05lh7bvbicz1djqxcl6f13dlgsf3ww56gzg1"; depends=[lifecycle mvtnorm Rcpp RcppEigen]; }; rphylopic = derive2 { name="rphylopic"; version="0.3.0"; sha256="088aafylypsaxfl903qhi8kigkchmdzndibxic4sgiycry6xvxrz"; depends=[crul ggplot2 gridBase jsonlite png]; }; @@ -15942,13 +15585,12 @@ in with self; { rqPen = derive2 { name="rqPen"; version="2.3"; sha256="0qp4c420jcph4hxy8hq890hl524g82gkbgchjxh118jfjqkz7yli"; depends=[quantreg]; }; rqdatatable = derive2 { name="rqdatatable"; version="1.3.1"; sha256="1ml83gw9m9945qws2pi0x3bzm1jn4rh8n7zwivbir685hfprbhvn"; depends=[data_table rquery wrapr]; }; rquery = derive2 { name="rquery"; version="1.4.9"; sha256="12m80vr2sxm2ivvd1a27jy6vh9xvk5z4irlkaxm1f0sxi462brra"; depends=[wrapr]; }; - rr = derive2 { name="rr"; version="1.4"; sha256="1c2h6ibjfwrjfqh1if3c90pdh0g2rf3p71j4p9w23xbbrx2l80pl"; depends=[arm coda magic MASS]; }; rr2 = derive2 { name="rr2"; version="1.0.2"; sha256="099vjg91ni2bnxlra18pvgsvzrl28zrj639cdjrh3wkpqv99d04q"; depends=[ape lme4 Matrix nlme phylolm]; }; rrBLUP = derive2 { name="rrBLUP"; version="4.6.1"; sha256="1ny48ra25rzx3k69pmzpd31ka2zhqyqiq1v7ann862j3ris0w8z9"; depends=[]; }; - rrMixture = derive2 { name="rrMixture"; version="0.1-1"; sha256="0k7rc1d1nx4w1hcv8rx6kpjh846mblx6787z94ki1vv1dwflb6zr"; depends=[gtools MASS Matrix matrixcalc Rcpp RcppArmadillo]; }; + rrMixture = derive2 { name="rrMixture"; version="0.1-2"; sha256="0bh63v9zis8w3ylvbc99iy2hx0wn6302d49bhcw3wr7wmbzvdi8s"; depends=[gtools MASS Matrix matrixcalc Rcpp RcppArmadillo]; }; rrapply = derive2 { name="rrapply"; version="1.2.4"; sha256="06kdkclvcxyw5hsy18azz7345140079r134dksyb6wv94aiplzkm"; depends=[]; }; rrat = derive2 { name="rrat"; version="1.0.0"; sha256="1j1jd32pgggn5cqv66l63sw5p4hblgpznf33wd0zdbfapwy8rx4r"; depends=[quantreg]; }; - rrcov = derive2 { name="rrcov"; version="1.6-2"; sha256="18x8y2b9n2plpn4086nkjk9c27p7gb78kbrv5pj9r8fb0idl5rn5"; depends=[lattice mvtnorm pcaPP robustbase]; }; + rrcov = derive2 { name="rrcov"; version="1.7-0"; sha256="1z98j9973hl19b70dcwfcf55ifxr2a9v53daaq2sagynh95aik6b"; depends=[lattice mvtnorm pcaPP robustbase]; }; rrcov3way = derive2 { name="rrcov3way"; version="0.2-3"; sha256="0axgdxp216h1zdi4bb4hiynkr0kjxypdzxga51qq430pv9sdl6n0"; depends=[nnls pracma robustbase rrcov ThreeWay]; }; rrcovHD = derive2 { name="rrcovHD"; version="0.2-7"; sha256="1srxgw5qcgpmxqfplvbrlryxvkx0mic5y7v5lxgfvqvlmcb3rm3f"; depends=[pcaPP pls Rcpp robustbase robustHD rrcov spls]; }; rrcovNA = derive2 { name="rrcovNA"; version="0.4-15"; sha256="0r60chxm7bpc6sis60rp8k8xchwfrfa3lrfaidvv22ipx2q0psp7"; depends=[cluster lattice norm robustbase rrcov]; }; @@ -15980,7 +15622,7 @@ in with self; { rscopus = derive2 { name="rscopus"; version="0.6.6"; sha256="0kl6rv0j2396b8izvy0lp1f588il6w3yhq6d4swv8x8z14rsgcpw"; depends=[dplyr glue httr jsonlite plyr tidyr]; }; rscorecard = derive2 { name="rscorecard"; version="0.22.0"; sha256="1srhpbp9mm6ig60rdkv696vm49j0fcqvhfg8d3x6zs3a0ipnz6wb"; depends=[dplyr httr jsonlite lazyeval magrittr purrr tidyr tidyselect]; }; rsdNE = derive2 { name="rsdNE"; version="1.0.0"; sha256="1faa6m2y4i6dqzgzj8glfcf5j438m3qqxcz1rgk7w20x3g24ddyx"; depends=[]; }; - rsdepth = derive2 { name="rsdepth"; version="0.1-5"; sha256="064jbb6gnx0sm41w3sbi6mvsbzsfkjqfici6frk8sfm9ybvm591j"; depends=[]; }; + rsdepth = derive2 { name="rsdepth"; version="0.1-22"; sha256="067mx424qvl9xskcd5r5i3dp92mwjcc8xpd9kd1y0yjbax0dkcg9"; depends=[]; }; rsdmx = derive2 { name="rsdmx"; version="0.6"; sha256="1sw8pp2j22rs1nlsyphyqbhywgplan9qmrs5wm9wvrn5g26k4bg9"; depends=[httr plyr R6 XML]; }; rseedcalc = derive2 { name="rseedcalc"; version="1.3"; sha256="18zmpjv6g8f7pmvqlp6khxyys9kdnq5x4zxwb6gwybsh4jxrymkp"; depends=[]; }; rsem = derive2 { name="rsem"; version="0.5.0"; sha256="1xlk83ivmk8wm6mdmmwvv2z39r6scswgmsmy6dd4qbc3kiqn8cqm"; depends=[lavaan MASS]; }; @@ -16003,29 +15645,28 @@ in with self; { rspiro = derive2 { name="rspiro"; version="0.2"; sha256="1gjil39ib9p86a7r3i03h01x2dsc9y283rnp65xvavrzmmgz87b4"; depends=[]; }; rsppfp = derive2 { name="rsppfp"; version="1.0.4"; sha256="123yv54i58xj4wx9n08qp50mm4l271fm1zhzimrxx22wn2bg8zy5"; depends=[doParallel dplyr foreach igraph stringr tidyr]; }; rsprite2 = derive2 { name="rsprite2"; version="0.1.0"; sha256="0pflmdm83gskfbxha7r28w1w7xs2k8shp6w3py5mjjpklm2rn8ny"; depends=[checkmate Rdpack]; }; - rsq = derive2 { name="rsq"; version="2.2"; sha256="1hjzk5mvva4b0r2r8bisg915iz32aiynp8w57d2xikdfb90nw5h0"; depends=[Deriv lme4 MASS Matrix nlme]; }; + rsq = derive2 { name="rsq"; version="2.5"; sha256="1r628srxhhf7b51lnj4qrzgbqajkm0ls47a9rzjkvmfq4ax5i73f"; depends=[Deriv lme4 MASS Matrix nlme]; }; rsqliteadmin = derive2 { name="rsqliteadmin"; version="1.0.1"; sha256="1d9szm3nsr1q3hqrmapxdlymmgb3655n8v6x2vpcpahg54ajqrp5"; depends=[config data_table disk_frame DT fs golem magrittr RSQLite shiny shinyAce shinydashboard shinyFiles shinyjqui]; }; rstac = derive2 { name="rstac"; version="0.9.1-5"; sha256="08lnz49wba6w1rjrrpm3jpbd4vimhzn4215d049xc4zxqd0h6vbc"; depends=[crayon httr jsonlite lifecycle magrittr]; }; rstack = derive2 { name="rstack"; version="1.0.0"; sha256="19vbfmkd6ymadah1y1w5rn52f4hviddccyc6qj2cv5viqwbwws2z"; depends=[R6]; }; rstackdeque = derive2 { name="rstackdeque"; version="1.1.1"; sha256="0i1qqbfj0yrqbkad8bqc1qlxmyxpn7zycbnq83cdmfbilcmi87ql"; depends=[]; }; - rstan = derive2 { name="rstan"; version="2.21.3"; sha256="1ccjdwh0xspna2c0m5p8as8y2b0lnhdyk9hfd3jh58j6n8fbzg3n"; depends=[BH ggplot2 gridExtra inline loo pkgbuild Rcpp RcppEigen RcppParallel StanHeaders]; }; - rstanarm = derive2 { name="rstanarm"; version="2.21.1"; sha256="04ggzak3f7jaxza3dxyrmxp5b48qcgyspy22ykbhr03g4hzp7jk8"; depends=[bayesplot BH ggplot2 lme4 loo Matrix nlme Rcpp RcppEigen RcppParallel rstan rstantools shinystan StanHeaders survival]; }; + rstan = derive2 { name="rstan"; version="2.21.5"; sha256="1smr5cjrqvpdnkmjpjp73p96sy581x15mwrn4fqd1p4d5mbgxr46"; depends=[BH ggplot2 gridExtra inline loo pkgbuild Rcpp RcppEigen RcppParallel StanHeaders]; }; + rstanarm = derive2 { name="rstanarm"; version="2.21.3"; sha256="19rj396q84maxnd9d2xcd5rblg3310xn7sqbd6k18kwf3dvd7wp9"; depends=[bayesplot BH ggplot2 lme4 loo Matrix nlme Rcpp RcppEigen RcppParallel rstan rstantools shinystan StanHeaders survival]; }; rstanemax = derive2 { name="rstanemax"; version="0.1.3"; sha256="0myxcqwpk4zq5y1ri14rbsbb19kr8g7fd3mfdsn8vh2yi5xlcqk1"; depends=[BH dplyr ggplot2 magrittr purrr Rcpp RcppEigen rstan rstantools StanHeaders tidyr]; }; - rstantools = derive2 { name="rstantools"; version="2.1.1"; sha256="0b9x8rzj3dr4m7yjx476nn42z22xd1xnw85m9frfwxy5ivg1any9"; depends=[desc Rcpp RcppParallel]; }; + rstantools = derive2 { name="rstantools"; version="2.2.0"; sha256="1dsfgi02hps878n3vimfdbzpm4gr5n3ccrmnc61ncrqcp6p0p0fb"; depends=[desc Rcpp RcppParallel]; }; rstatix = derive2 { name="rstatix"; version="0.7.0"; sha256="0330y8iziffqg8j9j5h9zv4qcdyf8ybhmzxrr9fzq9nc6bf1gbm5"; depends=[broom car corrplot dplyr generics magrittr purrr rlang tibble tidyr tidyselect]; }; rstatscn = derive2 { name="rstatscn"; version="1.1.3"; sha256="07w7ixq1faq7mif2ksxcgl8n6ali9h0wx0nb2yz4kbdgvz68r7b9"; depends=[httr jsonlite]; }; rstiefel = derive2 { name="rstiefel"; version="1.0.1"; sha256="063nj6k2qzc5wd1dk6m6ld16sk2vlfa8ic86gc4qkqsla8l82fgg"; depends=[]; }; rstoat = derive2 { name="rstoat"; version="1.0.2"; sha256="0npwv33a7axwhnfyz39nh0x5kk4q3chscings3msx532lzvif0cl"; depends=[curl httr jsonlite keyring]; }; - rstpm2 = derive2 { name="rstpm2"; version="1.5.2"; sha256="0c6l3z250b2kn6mh2xyb0bd2y5nsbj11n9xfi51dac9s8xq3v7m4"; depends=[bbmle BH deSolve fastGHQuad mgcv Rcpp RcppArmadillo survival]; }; + rstpm2 = derive2 { name="rstpm2"; version="1.5.6"; sha256="17mhzfxh761vl64ar6pynpj3k2jkhjgbacxsjhkrfkbmy3aiv0d1"; depends=[bbmle BH deSolve fastGHQuad mgcv Rcpp RcppArmadillo survival]; }; rstream = derive2 { name="rstream"; version="1.3.6"; sha256="1mr869hff5wdpw6a7x71366y8dxf9vljbb11fssfkhcf7hm2ipnj"; depends=[]; }; rstudio_prefs = derive2 { name="rstudio.prefs"; version="0.1.8"; sha256="1mb87qf53h46n6fvyskr17v36lfqq59vi21lcf7j6mg2sz5nnyq5"; depends=[cli dplyr fs jsonlite purrr rappdirs rlang rstudioapi rvest tibble]; }; rstudioapi = derive2 { name="rstudioapi"; version="0.13"; sha256="12vdfzzjc6mv4h105l8cp108j3hjk0mqmg23m6mqr3jarfymphxa"; depends=[]; }; rsubgroup = derive2 { name="rsubgroup"; version="1.1"; sha256="16glxyv6aja7j0vfjccfi8w84wzm2ajfl62l0g5vpl73j7cs6gnk"; depends=[foreign rJava]; }; rsurface = derive2 { name="rsurface"; version="1.1.0"; sha256="1pymbgvr72nqd66wap5wrcizzx2k9bfr6vkxv6dkvjmi8q7jl2gv"; depends=[plotly rsm]; }; - rsurfer = derive2 { name="rsurfer"; version="0.2"; sha256="14zd8fhak12yha6miwb84085722v5ipk8lagijhc6af291kp70i9"; depends=[gdata stringr]; }; rsvd = derive2 { name="rsvd"; version="1.0.5"; sha256="07p2hjmpcwcsang8z9sjkpy94rydcin7m3hyvcgzgm5cd6w8c1p4"; depends=[Matrix]; }; rsvddpd = derive2 { name="rsvddpd"; version="1.0.0"; sha256="0p2cpv3ipkvl27zhncpcyxp6lqw54ncdnxyk659qc24l0fqbw7dc"; depends=[MASS matrixStats Rcpp RcppArmadillo]; }; - rsvg = derive2 { name="rsvg"; version="2.2.0"; sha256="05mvi1ijnxayyj1f4p8nb56pncmm7x0sbq0d87asv7c7kw765n1a"; depends=[]; }; + rsvg = derive2 { name="rsvg"; version="2.3.1"; sha256="096w4d1gvfc65d4jg7ykp23k9f7cf7f8zvzfhvhd7qkfsbjpxqkj"; depends=[]; }; rsyncrosim = derive2 { name="rsyncrosim"; version="1.3.2"; sha256="1f66mx4s765jsmvgvff3sizp3xmqhc4ipj0j70igyj381xxa937x"; depends=[DBI gtools lifecycle raster RSQLite]; }; rsyntax = derive2 { name="rsyntax"; version="0.1.3"; sha256="13zi05gprmdvb066l3qfxya40rhw4v1wfi0b9v684f6w2v6rsjr6"; depends=[base64enc data_table digest igraph magrittr png rlang stringi tidyselect tokenbrowser]; }; rsyslog = derive2 { name="rsyslog"; version="1.0.2"; sha256="0sc9jiscabr72fsx1wwjvq44casvhdsinj77wrcp017a4f9i0k5b"; depends=[]; }; @@ -16040,7 +15681,7 @@ in with self; { rtern = derive2 { name="rtern"; version="0.1.2"; sha256="0i9493f3rykhjxwbvydz6aikzkwfphq3dyc8jw0fzw057zd24cgb"; depends=[rlang]; }; rtext = derive2 { name="rtext"; version="0.1.22"; sha256="0wsy0iqzbfin92pw0bqj4bxm2p4f2y4frr137l6c3yvd0jrax3q4"; depends=[digest hellno magrittr R6 Rcpp RSQLite stringb]; }; rtf = derive2 { name="rtf"; version="0.4-14.1"; sha256="032ff0yavqmd2d9svgwkmvxwh0cxjbac6pj48v4cshi898f02rhh"; depends=[R_methodsS3 R_oo]; }; - rtgstat = derive2 { name="rtgstat"; version="0.3.0"; sha256="1zg2xhypv0pycabzn423df9fivyys2vgdwsy60a43s8j9al7iz63"; depends=[cli dplyr httr2 purrr snakecase stringr tidyr]; }; + rtgstat = derive2 { name="rtgstat"; version="0.3.1"; sha256="1qmgrckinh1bf64p4lpg4adw1874f540ax3qkyh3n2gran5cplms"; depends=[cli dplyr httr2 purrr snakecase stringr tidyr]; }; rticles = derive2 { name="rticles"; version="0.23"; sha256="1ipblw3rmkma22jl2hf1pyfm6l8k31zcmm3swmwii6k0x7khiav1"; depends=[knitr rmarkdown tinytex xfun yaml]; }; rticulate = derive2 { name="rticulate"; version="1.7.2"; sha256="0xgl36m63z9kzqj0srjp3lb65hfizszlgw0kwjwc9li607q4fy6m"; depends=[dplyr ggplot2 glue magrittr mgcv purrr readr rlang stringr tibble tidymv tidyr tidyselect tidyverse]; }; rtide = derive2 { name="rtide"; version="0.0.9"; sha256="0gr0j52jy7y1w1s0s88rjv9l85yvavypagmi0qw2ix9ca2xadlzl"; depends=[abind chk dttr2 tibble]; }; @@ -16049,7 +15690,7 @@ in with self; { rtist = derive2 { name="rtist"; version="1.0.0"; sha256="0p4jlz0z0nbvmixdrym6nqagz2i28zbsijcj785rd6wiy72d2hg5"; depends=[]; }; rtk = derive2 { name="rtk"; version="0.2.6.1"; sha256="1xafmp5y5p8fnsh16wj8n08x69v2hawnsvsy7g4dcz1i5xkhyc0m"; depends=[Rcpp]; }; rtkore = derive2 { name="rtkore"; version="1.5.5"; sha256="0srk0ih4gbmhb1pl6zf8sjwrkdmgws9cl1397fcqv6l3bc376622"; depends=[inline Rcpp]; }; - rtmpt = derive2 { name="rtmpt"; version="0.2-3"; sha256="0529605nvdiaqw1iqp6bg0di8akamjawg61l51s3f9mfzsqvvk03"; depends=[coda data_table loo Ryacas stringr truncnorm]; }; + rtmpt = derive2 { name="rtmpt"; version="1.0-0"; sha256="0a8q02vhjhm8l8y58kyyjadwm34ddlm5ayhgqmngkhl9f628s1gm"; depends=[coda data_table loo Ryacas stringr truncnorm]; }; rtodoist = derive2 { name="rtodoist"; version="0.1.0"; sha256="12lh14ps4snlyykhc65nvn8ipic8is8ssmgcx73snmifhrzxgdyb"; depends=[digest dplyr getPass glue httr keyring magrittr purrr]; }; rtop = derive2 { name="rtop"; version="0.5-14"; sha256="1wwllckginnzisapbklpsizy47db24r83xahq4qsd8zhqvv9yj33"; depends=[gstat sp]; }; rtrek = derive2 { name="rtrek"; version="0.3.3"; sha256="1lnjwslx1l0vgysw3m1s83h246grplmv4mdk4m6ym83mrdmkzvhi"; depends=[downloader dplyr ggplot2 jpeg jsonlite magrittr memoise purrr rvest tibble tidyr xml2]; }; @@ -16069,7 +15710,7 @@ in with self; { rubias = derive2 { name="rubias"; version="0.3.3"; sha256="0xphah4axkchscxcxx7231cb67pqfi4smvy3lazlzbyysgwmr1kk"; depends=[dplyr gtools magrittr Rcpp RcppParallel readr rlang stringr tibble tidyr]; }; rucm = derive2 { name="rucm"; version="0.6"; sha256="1n6axmxss08f2jf5impvyamyhpbha13lvrk7pplxl0mrrrl5g0n8"; depends=[KFAS]; }; rucrdtw = derive2 { name="rucrdtw"; version="0.1.4"; sha256="0865x8i2n63xjbq0pzalm4gd6rpg72yrcsm4rw40a3kzy2svvnlm"; depends=[Rcpp]; }; - rugarch = derive2 { name="rugarch"; version="1.4-7"; sha256="0i9483gk0x8jhxx9zsh0p3lbs8vslnchb3j78slpzgsc6am43zjh"; depends=[chron ks numDeriv Rcpp RcppArmadillo Rsolnp SkewHyperbolic spd xts zoo]; }; + rugarch = derive2 { name="rugarch"; version="1.4-8"; sha256="1ics70slwv2bwzbyznnmsirkwhgrnxd4lc5dpkbnnsax6gfhzzif"; depends=[chron ks numDeriv Rcpp RcppArmadillo Rsolnp SkewHyperbolic spd xts zoo]; }; ruimtehol = derive2 { name="ruimtehol"; version="0.3"; sha256="1qscaj28xrrqccav0y82mn5nzkc8zfgmx2axg7bxrrhqaibfpy5j"; depends=[BH Rcpp]; }; ruin = derive2 { name="ruin"; version="0.1.1"; sha256="124xs1c2mjfy6z0bp83rwkqw2y73g77xwn3q4yd2xw0v2frnpvpz"; depends=[ggplot2]; }; ruler = derive2 { name="ruler"; version="0.2.4"; sha256="159k7453jb37zgjg9rcgz566mz2827dpfq5gm40r6zgkia4z3apx"; depends=[dplyr keyholder magrittr rlang tibble tidyr]; }; @@ -16078,7 +15719,7 @@ in with self; { runcharter = derive2 { name="runcharter"; version="0.2.0"; sha256="0n4jkgvlbpafjks22fjackazp246c7skphirjsrzkrg169qwdin0"; depends=[data_table ggplot2 magrittr zoo]; }; runes = derive2 { name="runes"; version="0.1.0"; sha256="1s2vhwya434q70j4aq4qbds8wivscc5cyldr5pch7p41nqj0j7aw"; depends=[]; }; runexp = derive2 { name="runexp"; version="0.2.1"; sha256="0pcxwz0kpfrcsfalwlcwp81k3dyc9rqm9rba25xkp51bwz5scv64"; depends=[doParallel foreach]; }; - runjags = derive2 { name="runjags"; version="2.2.1-5"; sha256="0jj5xacp6f3g7mkz6yd2qay149qmq2jmiza0a5gg42yc8jqb7h52"; depends=[coda lattice]; }; + runjags = derive2 { name="runjags"; version="2.2.1-7"; sha256="05jhya9wkk8yzldda8xih2x62cz9rpq7rbnn4nhyvp4wwlaxn7z8"; depends=[coda lattice]; }; runner = derive2 { name="runner"; version="0.4.1"; sha256="1iic84ab6gbikc2qfqhdg5i48i8hldz59l0k4466n8v6ha2k7hxi"; depends=[Rcpp]; }; runonce = derive2 { name="runonce"; version="0.2.3"; sha256="04lmzw9ldc3b6zdc7sr3mrfiam24372j11l5p1y9i2zjb9rxk1nn"; depends=[bigassertr urltools]; }; runstats = derive2 { name="runstats"; version="1.1.0"; sha256="0n9348af60j8a2mwgbafabspb4nm45ry92zlzmynja06zyx8lb2d"; depends=[fftwtools]; }; @@ -16089,8 +15730,7 @@ in with self; { rutifier = derive2 { name="rutifier"; version="1.0.4"; sha256="045pr8apd105azs1glpwqrbamglqddxfpml9yrfrlaivz3fjd9l8"; depends=[R_utils]; }; ruv = derive2 { name="ruv"; version="0.9.7.1"; sha256="1n4q9mrp9f644spbns6bbnzmlabrg90hwkdfg3hnm3rxp9b4xid0"; depends=[ggplot2 gridExtra scales]; }; rv = derive2 { name="rv"; version="2.3.5"; sha256="1rjbhlvd7cxn7yw001p859zl5ibxl4di03j1aadm4zycq1zyr6q7"; depends=[]; }; - rvHPDT = derive2 { name="rvHPDT"; version="3.0"; sha256="05nrfnyvb8ar7k2bmn227rn20w1yzkp1smwi4sysc00hyjrlyg8s"; depends=[gtools]; }; - rvTDT = derive2 { name="rvTDT"; version="1.0"; sha256="09c2fbqnlwkhaxfmgpsdprl0bb447ajk9xl7qdlda201fvxkdc8v"; depends=[CompQuadForm]; }; + rvHPDT = derive2 { name="rvHPDT"; version="4.0"; sha256="0a6mzb714cvgwgam7429wzv0r28yl2aqhfsx7wjpw265ys8qyw1h"; depends=[gtools]; }; rvalues = derive2 { name="rvalues"; version="0.7.1"; sha256="0vgizlm5g6mnzvwsprgg0wj0k2y3nc8zn1bqdaw58py92mqpvj1d"; depends=[]; }; rvcheck = derive2 { name="rvcheck"; version="0.2.1"; sha256="09khjklvzbafd7r55496by01a9g3y291d87hpy43w44dmz9fzn9a"; depends=[BiocManager yulab_utils]; }; rversions = derive2 { name="rversions"; version="2.1.1"; sha256="1cbwwbz8lqx2n33xr4q904whvld22s63rpyy1nn93395l7ssrakr"; depends=[curl xml2]; }; @@ -16116,6 +15756,7 @@ in with self; { rwty = derive2 { name="rwty"; version="1.0.2"; sha256="0p0bpq5dk8vjqx8ry364xhaq3rgxa49planapggicg7by2mhaacc"; depends=[ape coda GGally ggdendro ggplot2 phangorn plyr reshape2 viridis]; }; rwunderground = derive2 { name="rwunderground"; version="0.1.8"; sha256="02p26gkicd5v511kb04p1h3wxj57r7j5vr97n3ibywc6ivz7nqxa"; depends=[countrycode dplyr httr lubridate tibble]; }; rxSeq = derive2 { name="rxSeq"; version="0.99.3"; sha256="0g0n2pzbssz61psghjp1vrlspgph4s39x1k1zhcz7ivdn5pjb2nx"; depends=[MASS numDeriv VGAM]; }; + rxode2 = derive2 { name="rxode2"; version="2.0.6"; sha256="0x5ha7v0w61r8brwpyhb9myp7jcfxf1iw4nyzffy3ng5pj5fd87p"; depends=[assertthat backports BH checkmate cli dparser ggplot2 inline lotri magrittr memoise PreciseSums qs Rcpp RcppArmadillo RcppEigen rex sitmo StanHeaders sys]; }; rxylib = derive2 { name="rxylib"; version="0.2.7"; sha256="1vc1g1vm61xhf2dvaxvz2y9z7mqk7508068slq83fjcdnkc1pbfr"; depends=[BH Rcpp]; }; ryandexdirect = derive2 { name="ryandexdirect"; version="3.6.0"; sha256="0f1z8gp1pxfqx694alj435ihzxvd9ban04b1clzipgdq9la1hza8"; depends=[bitops data_table dplyr httr jsonlite magrittr purrr readr stringr tidyr xml2]; }; rym = derive2 { name="rym"; version="1.0.5"; sha256="0brh8hm3x21swypnzj3bbbf7njgarsj4804fp5lcqlr4nadzx26y"; depends=[httr purrr stringr]; }; @@ -16126,11 +15767,11 @@ in with self; { s2 = derive2 { name="s2"; version="1.0.7"; sha256="0gwydn6wdl675ydkcckrci6ylcx30qn8nfhmrp4qx4r9mv3c2410"; depends=[Rcpp wk]; }; s20x = derive2 { name="s20x"; version="3.1-31"; sha256="0gnp703blgawfymd6nxz98w8g7sabagrnk3qc3d3cxj887w83gih"; depends=[]; }; s2dv = derive2 { name="s2dv"; version="1.1.0"; sha256="1sx7zmd0m0ny3jm7m5r1x327pw0qn8j0ny02yv6ki7kpbh6mk0pw"; depends=[abind bigmemory ClimProjDiags easyNCDF mapproj maps multiApply NbClust ncdf4 plyr SpecsVerification]; }; - s2dverification = derive2 { name="s2dverification"; version="2.10.2"; sha256="02i2xfrxyia570v7v4kyqcwznw732pijxwf0r6rhgag7ndmnivj7"; depends=[abind bigmemory GEOmap geomapdata mapproj maps NbClust ncdf4 plyr SpecsVerification]; }; + s2dverification = derive2 { name="s2dverification"; version="2.10.3"; sha256="10zqw7w8hm7cqbaxy6asflw0i8s5rmki2xhv3d51sm67vb7qn6f4"; depends=[abind bigmemory GEOmap geomapdata mapproj maps NbClust ncdf4 plyr SpecsVerification]; }; s2net = derive2 { name="s2net"; version="1.0.1"; sha256="1f6lc8azx8lax7jc5ggzirwnp5d9ka2plimfkg70vx783xf56zaw"; depends=[MASS Rcpp RcppArmadillo]; }; + s3_resourcer = derive2 { name="s3.resourcer"; version="1.0.1"; sha256="0y0vh9902qrzmhns8sb1bh7pd0jg27ll0if539ylr59vbfx8b54z"; depends=[aws_s3 httr R6 resourcer sparklyr]; }; s4vd = derive2 { name="s4vd"; version="1.1-1"; sha256="1rp3z42nxmrvb942h3c5cl544lngzx7nrnnr4zjw7dq495bym7yp"; depends=[biclust foreach irlba]; }; sAIC = derive2 { name="sAIC"; version="1.0"; sha256="1ih63cfs98kb61gwbmrx2yq7iacb5qa1qrh1a264041qd27r5pj5"; depends=[]; }; - sBF = derive2 { name="sBF"; version="1.1.1"; sha256="0dankakl4rwl9apl46hk57ps4mvn2l1crw4gdqds26fc8w6f6rab"; depends=[]; }; sBIC = derive2 { name="sBIC"; version="0.2.0"; sha256="1fx17c9w7v6wi02i293vjdahwxx4b5a118r655cl12gsd5qwqj11"; depends=[combinat flexmix hash igraph mclust poLCA R_methodsS3 R_oo Rcpp]; }; sClust = derive2 { name="sClust"; version="1.0"; sha256="0bvvbb360454d39bkynpbaf6ll9xsc3gxgxivy0igbr2pipfwbap"; depends=[class cluster]; }; sEparaTe = derive2 { name="sEparaTe"; version="0.3.0"; sha256="0wfwipvv1mirsmnwwa521rd1xrrj7pidw2gjan7xwa52sgfsbdg9"; depends=[]; }; @@ -16147,22 +15788,21 @@ in with self; { sabarsi = derive2 { name="sabarsi"; version="0.1.0"; sha256="14c94zby3jjm6jr28nrg3qp6r6iw68wsb5l5bpd6jjz9pkljrk9i"; depends=[]; }; sabre = derive2 { name="sabre"; version="0.4.0"; sha256="02gbyc458i0x15n2ra7853h373yrf1c570sp2w0zidwlxg94ars0"; depends=[dplyr entropy raster rlang sf tibble tidyr]; }; sac = derive2 { name="sac"; version="1.0.2"; sha256="1yg133zm0db2lv0m62ij7c27bs4k3kbjic15dwrak534lk885sj2"; depends=[]; }; - saccades = derive2 { name="saccades"; version="0.1-1"; sha256="138a6g3hjmcyvflpxx1lhgxnb8svrynplrjnvzij7c4bzkp8zip6"; depends=[zoom]; }; sad = derive2 { name="sad"; version="0.1.3"; sha256="0wr4xdx68hrxaw5izy36gm10smk6s1gzrzwayhfp4lhvkn75qsww"; depends=[dualtrees emdist]; }; sadists = derive2 { name="sadists"; version="0.2.4"; sha256="00iqgwqfia4mybg4v66kb368gydr103zmr8ka9y4j8rmwkg5j9kq"; depends=[hypergeo orthopolynom PDQutils]; }; sads = derive2 { name="sads"; version="0.4.2"; sha256="1j6vdjvpnbqp4kwbvhcl8p51ln29mmk9n150718wsqlifb8d1lw9"; depends=[bbmle GUILDS MASS poilog VGAM]; }; sae = derive2 { name="sae"; version="1.3"; sha256="1ncrlzgnga9pfa2j8x1y6axl2665rp08aff98zrim6gq6n6yap8z"; depends=[lme4 MASS]; }; saeBest = derive2 { name="saeBest"; version="0.1.0"; sha256="0s68w9cikhpac1kdlm1pphvnks1izacs5s87d7r380c3lkgkzd76"; depends=[sae]; }; - saeHB = derive2 { name="saeHB"; version="0.2.0"; sha256="0ahll2jqn7bxd0l629n8zj80y37acspy2m6vhjbg96206i49mnr5"; depends=[CARBayesdata coda MASS nimble rjags stringr]; }; + saeHB = derive2 { name="saeHB"; version="0.2.1"; sha256="0jlfflpy67y8val89nn29larhw0v9qgsqp3x1sf3h1az9lc7bx5p"; depends=[CARBayesdata coda MASS nimble rjags stringr]; }; saeHB_ME = derive2 { name="saeHB.ME"; version="1.0"; sha256="0wvh31lhl79fapp96kz6vaa0a8lg3j472vw1gjcjmbvijp9ywywr"; depends=[coda rjags stringr]; }; saeHB_ZIB = derive2 { name="saeHB.ZIB"; version="0.1.0"; sha256="0jb3pk99315mybvhm1y2jk62jgdnjln0c86z3g362r1nr718hdn7"; depends=[coda rjags stringr]; }; saeHB_gpois = derive2 { name="saeHB.gpois"; version="0.1.0"; sha256="131flxcc8mjqix2gnby66gdjnzncgbciqriqzwz18brq85amignc"; depends=[coda rjags stringr]; }; saeHB_hnb = derive2 { name="saeHB.hnb"; version="0.1.0"; sha256="00sms01xb290h555v5ngp5vnaancq165mcvli8dmni0mfdx5i7p3"; depends=[coda rjags stringr]; }; - saeHB_panel = derive2 { name="saeHB.panel"; version="0.1.0"; sha256="1nj237lpypz9vpamic4qm17x0p36yqdy8mmgy778c1dhmpvmwrfs"; depends=[coda rjags stringr]; }; + saeHB_panel = derive2 { name="saeHB.panel"; version="0.1.1"; sha256="0280hczz47nlrr06wihfl6j0qfnv8w8vvjjr11nzf6p61hkz6sdx"; depends=[coda rjags stringr]; }; saeHB_spatial = derive2 { name="saeHB.spatial"; version="0.1.0"; sha256="0fqc3c5y4rwfpgfbwfsrdhqlwjbal28wi9djm1vlncr8phkzfpln"; depends=[coda rjags stringr]; }; - saeHB_twofold = derive2 { name="saeHB.twofold"; version="0.1.0"; sha256="0jmabk649lfsrjx4an0a8x5kpb4agfw9gqjilsf1pmqvq725a9bv"; depends=[coda data_table rjags stringr]; }; + saeHB_twofold = derive2 { name="saeHB.twofold"; version="0.1.1"; sha256="1fdrh4h9y6blvib7d0hn1dhccz7rrmyf84a3g49chshiympkp6nv"; depends=[coda data_table rjags stringr]; }; saeHB_zinb = derive2 { name="saeHB.zinb"; version="0.1.0"; sha256="1gqb6xwfyz171md058m0kva2pj6hir09p784jwch2i1m9mvzinma"; depends=[coda rjags stringr]; }; - saeME = derive2 { name="saeME"; version="1.2.4"; sha256="02yf5rf2kavwl3icfnsjg0kxmifrcc7v4j5jsfrfa8ssfbwcivhn"; depends=[ClusterR dplyr expm MASS]; }; + saeME = derive2 { name="saeME"; version="1.3"; sha256="0a733af5ykiql4zk89qnvvbxx2kh5avjxdl08iy5qxh7pmv6vl5d"; depends=[MASS]; }; saeMSPE = derive2 { name="saeMSPE"; version="1.0"; sha256="1xx9z1daghyx366h0mz9wikbkwiq8zbd2k1sm86jc45xjz5zwlrc"; depends=[Matrix Rcpp RcppArmadillo smallarea]; }; saeRobust = derive2 { name="saeRobust"; version="0.2.0"; sha256="1bdfrsm59xwkga0kxl3r5n83mhhkyzj7gplrgx26gyflashyd1zc"; depends=[aoos assertthat ggplot2 magrittr MASS Matrix memoise modules pbapply Rcpp RcppArmadillo spdep]; }; saeSim = derive2 { name="saeSim"; version="0.11.0"; sha256="0s0zcls4j3cx7wbvi0l3q4c3b0f9x9i2wcqnz4gzwyqik6pcfaic"; depends=[dplyr functional ggplot2 MASS parallelMap spdep tibble]; }; @@ -16171,13 +15811,13 @@ in with self; { saemix = derive2 { name="saemix"; version="3.0"; sha256="17ax2cvlk69y8f00xgbdibycxng45kx175b518sdlkrm49pdxm7h"; depends=[ggplot2 gridExtra npde rlang]; }; saery = derive2 { name="saery"; version="1.0"; sha256="09x1v627llqbpiwkh1wr0z7gsndfdrjzag2hprhq1adbzh05k47z"; depends=[]; }; safeBinaryRegression = derive2 { name="safeBinaryRegression"; version="0.1-3"; sha256="1g68r6pp5l41rbgyfqgcha1gpsisnl0ybdmdqr4ylr43f61dpgvd"; depends=[lpSolveAPI]; }; - safedata = derive2 { name="safedata"; version="1.1.0"; sha256="0ifdf9i2r4w9y6c08fmg91znckpfmwm3xmxlc576mcgwballkx4f"; depends=[chron curl httr igraph jsonlite readxl sf]; }; + safedata = derive2 { name="safedata"; version="1.1.1"; sha256="192ycy5qribzzrjhwmzv3p22936dq4bd40xkkscbsdic7vpqdlz4"; depends=[chron curl httr igraph jsonlite readxl sf]; }; safejoin = derive2 { name="safejoin"; version="0.1.0"; sha256="0qvra505g7cay3nhq6yqrddb7sw3kx50y8jhgvxi47rxdc3alzba"; depends=[dplyr glue]; }; safer = derive2 { name="safer"; version="0.2.1"; sha256="1lmhaj9y0hi4ybxfkllxl99vsagcg73sy4kkcmlvn3bs69jky1r9"; depends=[assertthat base64enc sodium]; }; safestats = derive2 { name="safestats"; version="0.8.6"; sha256="1rn3hawh6jn8dszdjr80l15g83n52agch2j3znzb0jmg7qkxd383"; depends=[BiasedUrn boot dplyr hypergeo purrr rlang survival]; }; safetyCharts = derive2 { name="safetyCharts"; version="0.3.0"; sha256="1riyd2rb799rr0j95s3wd45rwq8syfm0xllpihycpak0f56vg1s8"; depends=[dplyr DT forcats ggplot2 htmlwidgets huxtable jsonlite pharmaRTF plotly purrr RColorBrewer rlang shiny stringr Tendril Tplyr]; }; safetyData = derive2 { name="safetyData"; version="1.0.0"; sha256="1spa1wh1z8cqsz8vrkj3abny0xs3qp8d80dla8d031d70hvfkdjc"; depends=[]; }; - safetyGraphics = derive2 { name="safetyGraphics"; version="2.0.0"; sha256="1y1qj8vhq3z3g4ij2qkc5cpwc5zknmjnp3kpkbcr9cywjrdpa5pq"; depends=[datamods dplyr DT htmlwidgets jsonlite magrittr purrr rclipboard rlang safetyCharts safetyData shiny shinyjs sortable stringr yaml]; }; + safetyGraphics = derive2 { name="safetyGraphics"; version="2.1.0"; sha256="0vsyx9d157syz9qp8cnqgf2jgf4jkwyyi3mkf88zg51xl93dx19l"; depends=[datamods dplyr DT htmlwidgets jsonlite magrittr purrr rclipboard rlang safetyCharts safetyData shiny shinyjs sortable stringr tidyr yaml]; }; sageR = derive2 { name="sageR"; version="0.3.0"; sha256="093qxwbkf8cqc3zjad232987qq2155faj8w2qplwxzvg881f0yi0"; depends=[ggplot2]; }; sahpm = derive2 { name="sahpm"; version="1.0.1"; sha256="1grhfxpqx9dyvqd2v91im3jgki2k3abcaal2ix9pcdzz93fc9xlw"; depends=[mvtnorm]; }; sail = derive2 { name="sail"; version="0.1.0"; sha256="1wrh2dam5lblascqd8gl76jks72ys1amz84c6p08y8ykdmn2saq1"; depends=[gglasso glmnet]; }; @@ -16202,7 +15842,7 @@ in with self; { samplingbook = derive2 { name="samplingbook"; version="1.2.4"; sha256="08fhzanzb725hlagm0225121gdgipkbfkixizwykggaimkz5j1ad"; depends=[pps sampling survey]; }; sampsizeval = derive2 { name="sampsizeval"; version="1.0.0.0"; sha256="06mghabwqcc92hdvirm1gcna24hwll2gvm105ljkf5hgn0fa5xii"; depends=[dplyr plyr pracma sn]; }; samr = derive2 { name="samr"; version="3.0"; sha256="01km0f7qgm73x19vbvsxl083hs1dq4dj8qm5h64cxbf20b08my15"; depends=[GSA impute matrixStats openxlsx shiny shinyFiles]; }; - sams = derive2 { name="sams"; version="0.4.2"; sha256="0k67vdjwnp7ljll87vjqb80axbcfgm05rgw5vadzn67dgghkqd0j"; depends=[]; }; + sams = derive2 { name="sams"; version="0.4.3"; sha256="01rknjgxyvj3i12mqgnlr7m0wdvxp2ja0rx8hnb700vlxa1xdmhi"; depends=[]; }; samurais = derive2 { name="samurais"; version="0.1.0"; sha256="0s00hd3ax4r662n8iqmd9i56sgyjxbgc59la7qvh3jwcnzcvmgz9"; depends=[MASS Rcpp RcppArmadillo]; }; sand = derive2 { name="sand"; version="2.0.0"; sha256="0a8skj1wi1n9zlm7jb5cix1i4ssdzfpj4ym2854ala9jy6qj7g7n"; depends=[igraph igraphdata]; }; sandbox = derive2 { name="sandbox"; version="0.2.1"; sha256="0k86dgfjg7ib79cl6nwxv1g9i15pk501kd8ynlaj3mijpnhgvbal"; depends=[RLumModel]; }; @@ -16214,7 +15854,7 @@ in with self; { sankey = derive2 { name="sankey"; version="1.0.2"; sha256="0jvcr2bn69aklfbgj4hbsrc047mymrx0jmsg26m0g6w7n1igqvcw"; depends=[simplegraph]; }; sankeywheel = derive2 { name="sankeywheel"; version="0.1.0"; sha256="1sigj4jz13qj4s8vxk0dl2xsddqgyfxabj8yggkasawm7pryvbyy"; depends=[htmlwidgets]; }; sanon = derive2 { name="sanon"; version="1.6"; sha256="0h3l1dzgkddvb3vzg7pcgwrgidphy73jys2h49v84nbfvqr6l85z"; depends=[]; }; - santaR = derive2 { name="santaR"; version="1.0"; sha256="10g4z951mpxw9d21s5f6zwfch5xs9vx812fb0wyrbw9s8drmlbkh"; depends=[doParallel foreach ggplot2 gridExtra iterators pcaMethods plyr reshape2 shiny shinythemes]; }; + santaR = derive2 { name="santaR"; version="1.2.0"; sha256="1a3grbs7bknjgc49icnd589s4i2ds79dylisia6l40nkxrhppp70"; depends=[doParallel DT foreach ggplot2 gridExtra iterators pcaMethods plyr reshape2 shiny shinythemes]; }; santoku = derive2 { name="santoku"; version="0.7.0"; sha256="0li58ilaya2gkrxghl0zvbvp4hadlxvl6azn9ggxn9340chyn8b8"; depends=[assertthat glue lifecycle Rcpp rlang vctrs]; }; sanzo = derive2 { name="sanzo"; version="0.1.0"; sha256="1fqsx2mgjsy6vjvsp2avi2i5cw7cjs2p53l1z6hb3bzid3067s87"; depends=[]; }; saotd = derive2 { name="saotd"; version="0.3.0"; sha256="11ql731w3rc4spmd2ii52r49sxymxkf7wj2ngdvb8pcs4idar059"; depends=[dplyr ggplot2 ggraph igraph ldatuning lubridate magrittr reshape2 rtweet scales stringr tidyr tidytext topicmodels widyr]; }; @@ -16227,8 +15867,8 @@ in with self; { sarp_snowprofile_alignment = derive2 { name="sarp.snowprofile.alignment"; version="1.1.4"; sha256="0p3acphlc90d8kh0yyvc754vb5xvgzncw6819phzx11c63xmyqk9"; depends=[data_table dtw sarp_snowprofile shiny]; }; sars = derive2 { name="sars"; version="1.3.5"; sha256="07jaagf3q8x4iwjh1avy5vzv9y62ipnjd43acbw0hizh983qlq3r"; depends=[AICcmodavg cli crayon doParallel foreach nortest numDeriv]; }; sarsop = derive2 { name="sarsop"; version="0.6.9"; sha256="1rjpgicgy9vfi9q2vldrbbakybmazal5gh79p2kysnzhcr76v3z5"; depends=[BH digest Matrix processx xml2]; }; - sas7bdat = derive2 { name="sas7bdat"; version="0.5"; sha256="0qxlapb6wdhzpwlmzlhscy3av7va3h6gkzsppn4sx5q960310an3"; depends=[]; }; - sasLM = derive2 { name="sasLM"; version="0.8.0"; sha256="0g06jqlsc54h50bqjvxi3vbg00ksdaxxfrir5mnnf35qlgcbsszr"; depends=[mvtnorm]; }; + sas7bdat = derive2 { name="sas7bdat"; version="0.6"; sha256="13ybq0r5bza6pcih9876pmccggn5bm7mzmn071qs46sbbpq40kyk"; depends=[]; }; + sasLM = derive2 { name="sasLM"; version="0.8.1"; sha256="10gdrjphz79cl82zlyxcv1qi6ychl13hc82ys4jjc27mdn4390sd"; depends=[mvtnorm]; }; sasMap = derive2 { name="sasMap"; version="1.0.0"; sha256="11vhhxhakqm1gsb3p4s4966sapmrqfyw79zfppbx5lnqi3xr0ngn"; depends=[readr stringi stringr]; }; sasfunclust = derive2 { name="sasfunclust"; version="1.0.0"; sha256="1ba7g3rxyq5h806na6bsdvh6mw6hydgcf3740qkfd4d5fx7m0mq4"; depends=[fda MASS Matrix matrixcalc mclust Rcpp RcppArmadillo]; }; sass = derive2 { name="sass"; version="0.4.1"; sha256="1fq8wqnxmx10lg0dh4qzmxdkhd22fjh8vhassapxb1chsimwn3w5"; depends=[fs htmltools R6 rappdirs rlang]; }; @@ -16255,7 +15895,7 @@ in with self; { sbw = derive2 { name="sbw"; version="1.1.5"; sha256="10ks912f4xiy0i484vf24w5zz9n7kxlcy77ikz95p8vr5zlqkvgc"; depends=[MASS Matrix quadprog slam spatstat_geom]; }; scBio = derive2 { name="scBio"; version="0.1.6"; sha256="1bpizxm9fbxd4sfapi1ayfg5csacb4dvqbvappd79jkq4mrsk12q"; depends=[doSNOW fields foreach LiblineaR limma raster sp]; }; scCAN = derive2 { name="scCAN"; version="1.0.4"; sha256="1w509y629xpqd748k7rghv8plav0jyyigfcf3n2c1m2a6qhh338x"; depends=[FNN purrr scDHA]; }; - scCATCH = derive2 { name="scCATCH"; version="3.0"; sha256="0hq65zz8mm71i7hnpfafwmwr5vcf58m62lqqliifjbpl8rgc73yj"; depends=[crayon Matrix progress reshape2]; }; + scCATCH = derive2 { name="scCATCH"; version="3.1"; sha256="0jy69i3ph46f6w9za8gc8f6j6wgznd10dd5p27kyx4xy656fbz5f"; depends=[crayon Matrix progress reshape2]; }; scDHA = derive2 { name="scDHA"; version="1.1.2"; sha256="02iwkbh83h1xdckj30xg1azspq2v6sjrzpjgm6d1n14afgafv8x9"; depends=[cluster clusterCrit doParallel foreach igraph Matrix matrixStats Rcpp RcppAnnoy RcppArmadillo RcppParallel RhpcBLASctl torch uwot]; }; scDIFtest = derive2 { name="scDIFtest"; version="0.1.1"; sha256="1hq68g7zf7372cach2qfc7l1l8gh5aqkp66k0cxjnrhmvvb1qcax"; depends=[mirt sandwich strucchange zoo]; }; scDiffCom = derive2 { name="scDiffCom"; version="0.1.0"; sha256="1xgrsfrh06n8hzyqv3j99kjk6l85khg099vjdsf7kx9f5p92iixd"; depends=[data_table DelayedArray future future_apply magrittr Seurat]; }; @@ -16277,17 +15917,16 @@ in with self; { scagnostics = derive2 { name="scagnostics"; version="0.2-6"; sha256="0b5fkzhvr1js3l7s9wl12jspyklxm6ri6cn6brf949gfl4bjnnq9"; depends=[rJava]; }; scaleAlign = derive2 { name="scaleAlign"; version="1.0.0.0"; sha256="0340biwz0md6sxq5iq5wiz6q8kcrll80429f1ab9zz88k3fya2s6"; depends=[]; }; scaleboot = derive2 { name="scaleboot"; version="1.0-1"; sha256="1q0bs5f1vgja5gj3id1ny6raja8ljgd8dk50fs1wn90f6080afy7"; depends=[mvtnorm pvclust]; }; - scales = derive2 { name="scales"; version="1.1.1"; sha256="019ps0njjc0rzrjygqiyn8b9vp0c3c0jd56h1yi19wzi49jvdcj0"; depends=[farver labeling lifecycle munsell R6 RColorBrewer viridisLite]; }; + scales = derive2 { name="scales"; version="1.2.0"; sha256="1pq2rrix6a5gsi8xw38viiydp1bsxxmcmyy7dv9q8gkb1qj50p8q"; depends=[farver labeling lifecycle munsell R6 RColorBrewer rlang viridisLite]; }; scalpel = derive2 { name="scalpel"; version="1.0.3"; sha256="0c8k99i5v2ki2bmcjjr6rfk7y1ds7jlykdwgn5x2zvzpdw7p4vlw"; depends=[gam igraph Matrix protoclust R_matlab]; }; scalreg = derive2 { name="scalreg"; version="1.0.1"; sha256="0kfcgl9cpp6g1qx23s1yrjzn0hi74vmrw567vy9wpsmhk04a5bkx"; depends=[lars]; }; scam = derive2 { name="scam"; version="1.2-12"; sha256="0jlgx2v3jm8yk3gc7sk4mnlahd1cnarbakj2353qhw0k492gir8c"; depends=[Matrix mgcv]; }; scan = derive2 { name="scan"; version="0.54.1"; sha256="1v9d2ji7glgmjmb9df6hrdg3bzx6zdd69d5ly5k3sjfldhp3762m"; depends=[car kableExtra knitr magrittr mblm meta nlme readxl yaml]; }; scape = derive2 { name="scape"; version="2.3.3"; sha256="1jb5c335qsbrpsgngs8c1qlibyb7zvvx6mwydfhm1plx4pkcq0n1"; depends=[coda Hmisc lattice]; }; scapesClassification = derive2 { name="scapesClassification"; version="1.0.0"; sha256="0kwl9mbzcmn5qzqbzabf2igbhwbf5m1b1wa8rhm8mfv2qz7psyf2"; depends=[terra]; }; - scar = derive2 { name="scar"; version="0.2-1"; sha256="04x42414qxrz8c7xrnmpr00r46png2jy5giwicdx6gx8jwrkzhzs"; depends=[]; }; scatr = derive2 { name="scatr"; version="1.0.1"; sha256="1c2z722i7d7qflh4mzb8kkix5i22wph98kwz2p98x2mhaml8802d"; depends=[cowplot ggplot2 ggridges ggstance jmvcore R6]; }; scatterD3 = derive2 { name="scatterD3"; version="1.0.1"; sha256="187jq1y5va5npsmpkfyi6mhgynq956590q4z8v1ibadsrcldw34m"; depends=[digest ellipse htmlwidgets]; }; - scatterPlotMatrix = derive2 { name="scatterPlotMatrix"; version="0.1.0"; sha256="1xs1rzi6j3yrj4j4yjhlj24nkxdnc4xgpwrdv9p0bzwc4gcarw1j"; depends=[htmlwidgets]; }; + scatterPlotMatrix = derive2 { name="scatterPlotMatrix"; version="0.2.0"; sha256="0jnahr5hxcbs742h4wr0r6yz8qgfli8xqmxwl29cbr32ipkwjmfg"; depends=[htmlwidgets]; }; scattermore = derive2 { name="scattermore"; version="0.8"; sha256="1rgqm7r1k7j3h2y4i6d1a2y8fzivfcbmr7dj9d367c0w4vc77pfv"; depends=[ggplot2 scales]; }; scatterpie = derive2 { name="scatterpie"; version="0.1.7"; sha256="1pmspv8a7k20zyd5xvmav2k9mnjrkfhdij3rr9k504zyki8hfy1z"; depends=[ggforce ggfun ggplot2 rlang tidyr]; }; scatterplot3d = derive2 { name="scatterplot3d"; version="0.3-41"; sha256="152xqz9c70qab86mpgng049gxsg5f4fpf1m8dh93fb9v1avjd0sc"; depends=[]; }; @@ -16297,17 +15936,17 @@ in with self; { sccr = derive2 { name="sccr"; version="2.1"; sha256="0cjlzv92b5qrs43d3ry33zcggiqvsqaf8wq4k19ws9lvgh59b62v"; depends=[dplyr]; }; scdensity = derive2 { name="scdensity"; version="1.0.2"; sha256="173xm3bf8vxl30zk4n451al7m003byg9q4d1l1pfyfa4xnv8qdg9"; depends=[lpSolve quadprog]; }; scdhlm = derive2 { name="scdhlm"; version="0.5.2"; sha256="147kqr65gxy44nj9rj4jbw590pbqspli4dpkgdq4hj9x1daww2ql"; depends=[lmeInfo nlme readxl]; }; - scenario = derive2 { name="scenario"; version="1.0"; sha256="0v1b00kiny21yx4qkk2x51cy1zqibdnd68z76qia7h5py28yhxsi"; depends=[]; }; scgwr = derive2 { name="scgwr"; version="0.1.2-21"; sha256="15pwasxkwirr2wwf8w02cy8zx0bqavzyfixjz3m37c1llrhddpka"; depends=[dplyr FNN optimParallel sp spData]; }; schemr = derive2 { name="schemr"; version="0.1.0"; sha256="0w29la0mh5bvij52r8jgfl47cgm0xc53702ms5r4jv0pdd49qlg8"; depends=[apcluster dplyr ggplot2 magrittr OpenImageR purrr stringr]; }; schoRsch = derive2 { name="schoRsch"; version="1.9.1"; sha256="0f823z48s50jhcphqqivchrmkiwqg25nc01c17kjpzzryd2fi5zs"; depends=[]; }; schoenberg = derive2 { name="schoenberg"; version="2.0.2"; sha256="17pbw9266r9lv9blygmvq9285kcrcy07jaqrj3zfa2pg0zyvhjvm"; depends=[crayon]; }; scholar = derive2 { name="scholar"; version="0.2.2"; sha256="1irigcws62sz1ai3ci80cdgwgisnra8kylqb2hxx3h62ddlpzhg7"; depends=[dplyr ggplot2 ggraph httr R_cache rvest stringr tidygraph xml2]; }; - schoolmath = derive2 { name="schoolmath"; version="0.4"; sha256="06gcmm294d0bs5whvknrq48sk7li961lzy4bcncjg052zbbpn67x"; depends=[]; }; + schoolmath = derive2 { name="schoolmath"; version="0.4.1"; sha256="16vd1in016sqxllxmkvs0bav9drk6lynrcqf9d24y77yhm103q76"; depends=[]; }; schrute = derive2 { name="schrute"; version="0.2.2"; sha256="1j1bb7inhxq355kvqmp45zgxz41d3rpbh2rxk9wkahsbiy0cdybn"; depends=[dplyr ggplot2 magrittr stringi stringr tibble tidyr tidytext]; }; - schtools = derive2 { name="schtools"; version="0.1.1"; sha256="16s64jw4i18y0mzcp4q39diqbynxddcmnmxingsrh5v3qbk2am5q"; depends=[dplyr formatR rlang tidyr]; }; + schtools = derive2 { name="schtools"; version="0.2.1"; sha256="1c9b2z5w6blhhmpxsvqrwbm8mp6xx4xd533nx2f8c59h3i1ihaff"; depends=[dplyr formatR glue rlang stringr tidyr]; }; schumaker = derive2 { name="schumaker"; version="1.2.1"; sha256="15i39lzkd1qggd35sp39vy922y3y1n9drjkidz7asniv1miali6j"; depends=[]; }; scico = derive2 { name="scico"; version="1.3.0"; sha256="08grfbjd5s0vdw76ni37yjl2242rr8i2jy72sgpwgra282hpnji3"; depends=[scales]; }; + scidesignR = derive2 { name="scidesignR"; version="1.0.0"; sha256="0krr7kn3l4c0dyn9ln3dz0h9ivr21dnrlmncpxiv560wqxnwi7z0"; depends=[]; }; scientoText = derive2 { name="scientoText"; version="0.1"; sha256="0f18hg9s50lbbgl0fqjv45yhynpnsxj8wwm07g126snzr68gbd21"; depends=[stringr tm]; }; scifigure = derive2 { name="scifigure"; version="0.2"; sha256="1zc88r1lnb0cws130hq4rjc34rrp6zkmi8yhkwsm3vkznbhi4iba"; depends=[]; }; sciplot = derive2 { name="sciplot"; version="1.2-0"; sha256="097zcgjsv54f6wd8fjwh2xb406j6yrw94v9pcxa0zln1q7fs93vk"; depends=[]; }; @@ -16316,16 +15955,15 @@ in with self; { scoper = derive2 { name="scoper"; version="1.2.0"; sha256="08zpia618dkvgksbpvhix5dgvgzbc1iakf97bh4akpxqa7i3bcv5"; depends=[alakazam data_table doParallel dplyr foreach ggplot2 Rcpp rlang scales shazam stringi tidyr]; }; scopr = derive2 { name="scopr"; version="0.3.3"; sha256="1j45l5zcrpc4dnb6ik1v0jlqizpkijl0p656s869jhhvv55r6v2i"; depends=[behavr data_table memoise readr RSQLite stringr]; }; score = derive2 { name="score"; version="1.0.2"; sha256="1p289k1vmc7qg70rv15x05dyb92r7s6315whr1ibi40sqln62a5s"; depends=[msm]; }; - scorecard = derive2 { name="scorecard"; version="0.3.6"; sha256="1ajsgqfpw3wbbdn2rfwxi585rn0kih0c0hsknlrkhid0jcxvxln3"; depends=[data_table doParallel foreach ggplot2 gridExtra openxlsx stringi]; }; + scorecard = derive2 { name="scorecard"; version="0.3.7"; sha256="1zjckpx2x8lqnlw11aafd8a38cb9z6vqh709mk95ssyz2zmjkql1"; depends=[data_table doParallel foreach ggplot2 gridExtra openxlsx stringi]; }; scorecardModelUtils = derive2 { name="scorecardModelUtils"; version="0.0.1.0"; sha256="09znaxrv14m58hsk5pac458xbpcsidc6ygcsw4q9j0p4yd80qbvl"; depends=[car e1071 gbm ggplot2 partykit randomForest reshape2 sqldf stringr]; }; scorepeak = derive2 { name="scorepeak"; version="0.1.2"; sha256="1g9n7kjqb9qk5b7hw8ysrc069w9dzc4z29ay6z1kbm0v4kkzp7bi"; depends=[checkmate Rcpp]; }; scoring = derive2 { name="scoring"; version="0.6"; sha256="114jlpbnm15fdan5lr40adxdzwajy3yhdw6dm4kvkvky6qhcx7q5"; depends=[]; }; scoringRules = derive2 { name="scoringRules"; version="1.0.1"; sha256="0rc8nz68h56mzsr7hyga77n0i05rq3hjkzaqx78bihzcwqd9vji7"; depends=[knitr MASS Rcpp RcppArmadillo]; }; scoringTools = derive2 { name="scoringTools"; version="0.1.2"; sha256="11bxmpqiqqkjyvmyxlnzz7j64jmy1pjw06128vvydmqhjxxyawjh"; depends=[discretization dplyr magrittr sqldf]; }; - scoringutils = derive2 { name="scoringutils"; version="0.1.7.2"; sha256="1njdvy6fzw20xb13mpdqczvap88jfxxnid31nmrkq9yzjdigjv2c"; depends=[data_table forcats ggplot2 goftest scoringRules]; }; + scoringutils = derive2 { name="scoringutils"; version="1.0.0"; sha256="13pv6v8gwfrkrxs60a27sp99fmkbasikqgdp5pb4dnzicb9hi3dh"; depends=[data_table ggdist ggplot2 rlang scoringRules]; }; scout = derive2 { name="scout"; version="1.0.4"; sha256="0vr497g7g1xhf75cwjbjsns2fvdzy86iibbf5w0g2xylw82s4lh2"; depends=[glasso]; }; scpi = derive2 { name="scpi"; version="0.2.1"; sha256="043ifc7s7zaw1v1c52613jl9rasb32ia3l2njhf1gixdvah334di"; depends=[abind CVXR doRNG doSNOW dplyr ECOSolveR fastDummies foreach ggplot2 magrittr Matrix nloptr purrr Qtools rlang stringr tibble tidyr]; }; - scpm = derive2 { name="scpm"; version="2.0.0"; sha256="1ib46m3i50annp90n2ih4qdxabxik4ngg9j0a5hgspsvk1i4hrvp"; depends=[interp lattice MASS Matrix mvtnorm RandomFields rgl]; }; scqe = derive2 { name="scqe"; version="1.0.0"; sha256="1113zbc2jyq03fh8l1h6yidf25hh5dcqrk6wkk9flqwnbrvfkwrr"; depends=[AER ggplot2]; }; scquantum = derive2 { name="scquantum"; version="1.0.0"; sha256="0v263qxf3qp7hra3l8fyw8a625z9ym2h2zg5b9lsysdiznbi9bww"; depends=[]; }; scraEP = derive2 { name="scraEP"; version="1.2"; sha256="1qkfd4bp3sd3xrh9bdaqwmmvx7f9rvjcch6hi2p387ky04ywwqn4"; depends=[data_table rvest XML xml2]; }; @@ -16337,7 +15975,7 @@ in with self; { scrm = derive2 { name="scrm"; version="1.7.4-0"; sha256="1kn6f0ypkl50jvnxz9sc6nyb0cdcnaccgka984jfsniky16f6sn9"; depends=[Rcpp]; }; scrobbler = derive2 { name="scrobbler"; version="1.0.2"; sha256="14nnqcjrcc5xcdn2swwj0j2jsw5maayd9ba06s6d5i88png2xhv5"; depends=[httr jsonlite]; }; scrollrevealR = derive2 { name="scrollrevealR"; version="0.2.0"; sha256="0k8ffapwxpb25wphm76arma095hrh3wf0gpkx1z6g4rplahf4jxa"; depends=[glue htmltools]; }; - scrypt = derive2 { name="scrypt"; version="0.1.3"; sha256="14iblgbp9v2by8fjbrpsd59iknp5babcz7j3yv1yxxzcwyb6wrrm"; depends=[Rcpp]; }; + scrypt = derive2 { name="scrypt"; version="0.1.4"; sha256="12q9d4m7flbvlgssvjh1ga4jswkmqjfshf6pna6qk6v087gmzdsj"; depends=[Rcpp]; }; scryr = derive2 { name="scryr"; version="1.0.0"; sha256="040x2qvgrr8j5k3y2g24kngjys271radqhh3jsqi07dhg9bybr5q"; depends=[dplyr httr purrr tibble]; }; scs = derive2 { name="scs"; version="3.0-0"; sha256="18f1h3j1vzvkr5llqv98026ilrqvrdzckaacscwadzcw99rb2mqz"; depends=[]; }; sctransform = derive2 { name="sctransform"; version="0.3.3"; sha256="0aqbcarsvvzkh5h4i65f08y4b8dfcs3zi62hmvfy24gj81f15bw3"; depends=[dplyr future future_apply ggplot2 gridExtra magrittr MASS Matrix matrixStats Rcpp RcppArmadillo reshape2 rlang]; }; @@ -16348,8 +15986,7 @@ in with self; { sda = derive2 { name="sda"; version="1.3.8"; sha256="14cpl7zj9aamdwyc8c9s7hnf660srvjv66lpnsm837d4r7k19icv"; depends=[corpcor entropy fdrtool]; }; sdafilter = derive2 { name="sdafilter"; version="1.0.0"; sha256="0y692j25pln46dp6xvaq17fkym0461yqfa6rv5avfw2b240k8jiq"; depends=[glasso glmnet huge POET]; }; sdamr = derive2 { name="sdamr"; version="0.1.0"; sha256="19mgdipp2fwv0c8g5fc02j4vdnc6v4x0204570swv8mkb2r2acqy"; depends=[car dplyr ggplot2]; }; - sdat = derive2 { name="sdat"; version="1.1"; sha256="1mxijw2yfblqjvqqb2xrzhfn9c872i1q9ggw24xicvr2fk4lvjw6"; depends=[]; }; - sdcHierarchies = derive2 { name="sdcHierarchies"; version="0.19.2"; sha256="198bk08qz5xr07pkc9yj3n9rzgv5ssijhg9fwhhrg35rf7jni1s8"; depends=[cli data_table jsonlite Rcpp rlang shiny shinyjs shinythemes shinyTree]; }; + sdcHierarchies = derive2 { name="sdcHierarchies"; version="0.19.3"; sha256="1nnvn8mfmymfx7f7vi9hdqp03vdhvngmik1jd4magnc6ghrpcdai"; depends=[cli data_table jsonlite Rcpp rlang shiny shinyjs shinythemes shinyTree]; }; sdcLog = derive2 { name="sdcLog"; version="0.5.0"; sha256="0ssjgpfg3z8j9s47nmiw6a5jcsi4pppdxidvzm3sryjz4klallwg"; depends=[broom checkmate cli data_table mathjaxr]; }; sdcMicro = derive2 { name="sdcMicro"; version="5.6.1"; sha256="12maw34ibsa2fpdxy4ww8nbsllfvcjvf5idg4m4z0fjsbmd7li51"; depends=[car carData cluster data_table DT e1071 ggplot2 haven knitr MASS prettydoc Rcpp rhandsontable rmarkdown robustbase shiny shinyBS VIM xtable]; }; sdcSpatial = derive2 { name="sdcSpatial"; version="0.5.2"; sha256="0bnq63akzngvf6r9csg11cb98mhwd8ybrqrk4v2i0iiln70sf7b6"; depends=[raster]; }; @@ -16365,22 +16002,21 @@ in with self; { sdpdth = derive2 { name="sdpdth"; version="0.2"; sha256="1yn8fsjxpbagargf3mv0p23vsgnl64dxfkggrzvfp0ylxsx8nnvc"; depends=[Matrix matrixcalc rCMA Rcpp RcppArmadillo rJava]; }; sdprisk = derive2 { name="sdprisk"; version="1.1-6"; sha256="061x78irryc5phd8bv9cs2mfgiajgwmr85ryp1r47anadydb2haa"; depends=[numDeriv PolynomF rootSolve]; }; sdpt3r = derive2 { name="sdpt3r"; version="0.3"; sha256="02qv889mkzcilxzszzqcqgn9z5zmki0093mdriradbl1y8a27bp5"; depends=[Matrix]; }; - sdtoolkit = derive2 { name="sdtoolkit"; version="2.33-1"; sha256="0pirgzcn8b87hjb35bmg082qp14idc5pfvm6dikpgkswag23hwh8"; depends=[]; }; sdwd = derive2 { name="sdwd"; version="1.0.5"; sha256="14x5hjdbkr5lsh8x3wninxg88acqh6q50famf6qjlfm7727rdysc"; depends=[Matrix]; }; seacarb = derive2 { name="seacarb"; version="3.3.0"; sha256="1pw8651a3j29kx9kyq9g7p48wvw09858wpr0ijn2p4sgnx9ai5in"; depends=[gsw oce SolveSAPHE]; }; seagull = derive2 { name="seagull"; version="1.1.0"; sha256="1kmidbxzs8zrjji6wsn8nrdv5mpfmmf6q30h1w4rc0swx1ycsgx4"; depends=[matrixStats Rcpp RcppArmadillo]; }; - sealasso = derive2 { name="sealasso"; version="0.1-2"; sha256="0cjy3fj170p5wa41c2hwscmhqxwkjq22vhg9kbajnq7df2s20jcp"; depends=[lars]; }; + sealasso = derive2 { name="sealasso"; version="0.1-3"; sha256="0j43my9mj73ada3bzzxazgwcahm2bhzbmqc128xara46gxvwrbzz"; depends=[lars]; }; searchConsoleR = derive2 { name="searchConsoleR"; version="0.4.0"; sha256="1ffg5359pbwylw265wbahwl3hy1b0qqv4al71v5r8lgfircibn0j"; depends=[googleAuthR stringr]; }; searcher = derive2 { name="searcher"; version="0.0.6"; sha256="03q9nq5zkj344swq3ppliz6dhwaddls8xv633s6brccmrcgdaivm"; depends=[]; }; - seas = derive2 { name="seas"; version="0.5-2"; sha256="0hn4d5dc01zyycd7l3vj1sx6bq668n7fzffw9ypaa5l20fizs0ay"; depends=[MASS]; }; + seas = derive2 { name="seas"; version="0.6-0"; sha256="0cr4lsbd599gzjzc6px7hkm3np34zh6sjzgzamlp4mdrphpvlvn7"; depends=[MASS]; }; season = derive2 { name="season"; version="0.3.15"; sha256="0f63ichlnj49g0ni9560avr4415iyj5061pixkjmqj83y7bbsz22"; depends=[ggplot2 MASS survival]; }; - seasonal = derive2 { name="seasonal"; version="1.8.4"; sha256="1mqlck752d9hmzmkmjw9qq7g9kkrwbzglsm7sx0xc03qbm5zxd3k"; depends=[x13binary]; }; + seasonal = derive2 { name="seasonal"; version="1.9.0"; sha256="0kpmqix7lxlsnhacrhk5aa9gvzng3fg024ngpk5apmhai7m2bp20"; depends=[x13binary]; }; seasonalclumped = derive2 { name="seasonalclumped"; version="0.3.2"; sha256="0a9ryds9l00dw6pr9s6r6fzrby53zz63idjywh127a4ga48jwnq3"; depends=[ggplot2 gridExtra magrittr TTR]; }; seasonalityPlot = derive2 { name="seasonalityPlot"; version="0.99.3"; sha256="12z15qlvyj9rrljzqbhgh384x53qqylwmzias4bhx0k3hq2qvsrj"; depends=[dygraphs htmltools magrittr plotrix quantmod zoo]; }; seasonalview = derive2 { name="seasonalview"; version="0.3"; sha256="1l705yc7ssldsfckbgnvd95sh3zzhpkmf1rr6ar2s60s3wsyly4n"; depends=[dygraphs htmlwidgets openxlsx seasonal shiny shinydashboard xtable xts zoo]; }; seastests = derive2 { name="seastests"; version="0.15.4"; sha256="1xy2hacd57v75y5snhn4al7bi71wr994jy6m2sdr6qzzsd5pbgpc"; depends=[forecast xts zoo]; }; seawaveQ = derive2 { name="seawaveQ"; version="2.0.2"; sha256="1x4vvassal1lwb9xnwisrhlx2maaqxl84h7klfy8yg9x80fdrhsw"; depends=[lubridate plyr reshape2 rms survival]; }; - secr = derive2 { name="secr"; version="4.5.3"; sha256="1rp36brvpalzria61az514f3drinjxql0c12jgjb71m01vcjqfad"; depends=[abind BH MASS mgcv nlme raster Rcpp RcppEigen RcppNumerical RcppParallel sf stringr terra]; }; + secr = derive2 { name="secr"; version="4.5.4"; sha256="1mcxwql23xsci5g9g1q0h3vgrrwc5g2sbfjm3vrxgjx42qgfk21r"; depends=[abind BH MASS mgcv nlme raster Rcpp RcppEigen RcppNumerical RcppParallel sf stringr terra]; }; secrdesign = derive2 { name="secrdesign"; version="2.6.0"; sha256="0iaby8qpik6g5060m3cykrqslj8cl1ddg0hsqy6vjgy6gg9r6ach"; depends=[abind secr]; }; secret = derive2 { name="secret"; version="1.1.0"; sha256="063gpyc2s2l6zw1j8b8ppzsv9kjsf0s77s5wcn7ipmwkj8qr2g4b"; depends=[assertthat curl jsonlite openssl rprojroot]; }; secrettext = derive2 { name="secrettext"; version="0.1.0"; sha256="129v524yyb464mcij7hvzv05cxliaz5nm7v30g9g9ppskcdqhsx2"; depends=[dplyr magrittr rlang stringr testthat tidyr]; }; @@ -16405,7 +16041,7 @@ in with self; { segclust2d = derive2 { name="segclust2d"; version="0.3.0"; sha256="0gzxm4dgkfh80vyxl5xxhjr26s5hnzn85dmcvavfihbhqin6nj1s"; depends=[cli dplyr ggplot2 magrittr plyr RColorBrewer Rcpp RcppArmadillo reshape2 rlang scales zoo]; }; segmag = derive2 { name="segmag"; version="1.2.4"; sha256="1i717xg1z7s35pkwzywgjf9wx7zj9xksv0k87h7p1q62y073qbqm"; depends=[plyr Rcpp]; }; segmenTier = derive2 { name="segmenTier"; version="0.1.2"; sha256="01xbcddinjbkbqkwq2lnsxd3gw8fxys58p498dc2lw8psz3g2wgc"; depends=[Rcpp]; }; - segmented = derive2 { name="segmented"; version="1.4-1"; sha256="1aagn2v48ncwxx79h601nlalbgc40fc81nqaw6nbncqkqm0zaxi3"; depends=[MASS]; }; + segmented = derive2 { name="segmented"; version="1.5-0"; sha256="1d8np6psnmqyq3bxxd17ivp6pq6p8rx5hal4bgz8ckc4d1i9lp6n"; depends=[MASS]; }; segmentr = derive2 { name="segmentr"; version="0.2.0"; sha256="0q5kxxiw0akpk7w2a2l9zp7v4pvqblzdvrld5fjyl5f6h8hsb40z"; depends=[foreach glue Rcpp]; }; segmetric = derive2 { name="segmetric"; version="0.2.0"; sha256="1nirb5gnbs3vw74fmpapng0bqqwrz5a6c59apkg8s8x0vqxwhfvx"; depends=[magrittr sf units]; }; segregation = derive2 { name="segregation"; version="0.6.0"; sha256="0yajbbrbrkk6blb6r5y5fwvfz0j8kbc8fr91kb4f53j1afcbbhbx"; depends=[data_table]; }; @@ -16425,28 +16061,27 @@ in with self; { seleniumPipes = derive2 { name="seleniumPipes"; version="0.3.7"; sha256="1krpzh2gy3yl07c2n1d8q21xjc2qcv5ac1kv7212710bxkdyfad6"; depends=[httr jsonlite magrittr whisker xml2]; }; selfea = derive2 { name="selfea"; version="1.0.1"; sha256="0zyxbd5vg8nhigill3ndcvavzbb9sbh5bz6yrdsvzy8i5gzpspvx"; depends=[ggplot2 MASS plyr pwr]; }; selfingTree = derive2 { name="selfingTree"; version="0.2"; sha256="18ylxmg2ms4ccgm4ahzfl65x614wiq5id7zazjjz5y75h8gs7gzj"; depends=[foreach]; }; - sem = derive2 { name="sem"; version="3.1-14"; sha256="18m54hjl3w57n4ygnkcy80w0dc9dz1zvavjqh9sl6nqs52f9m246"; depends=[boot MASS mi]; }; + sem = derive2 { name="sem"; version="3.1-15"; sha256="05hk72zxvyv6kkjhk5y6qw253c64108az7030z8j1sz8wq03n0md"; depends=[boot MASS mi]; }; semEff = derive2 { name="semEff"; version="0.6.0"; sha256="0w919y49kl2vq9psnjn03cwwp99myip5cbvm6jmkkjiikx8iikh0"; depends=[boot gsl lme4]; }; semPlot = derive2 { name="semPlot"; version="1.1.5"; sha256="0d7v9yqc9nhx3hdrp444w1ah66zai3lg5y778m85r7ngh1prxlvc"; depends=[colorspace corpcor igraph lavaan lisrelToR OpenMx plyr qgraph rockchalk sem XML]; }; semPower = derive2 { name="semPower"; version="1.2.0"; sha256="1y3j6b3ab19fqxzqrrssjcj7f0za0vkwq97s7qs6hwj9yfsg1nas"; depends=[]; }; semTable = derive2 { name="semTable"; version="1.8"; sha256="0qr420rnz59q8arf6x05iy1zyh7pv31ldi2rsw1j2a00fbpp4ndf"; depends=[kutils lavaan plyr stationery xtable]; }; - semTools = derive2 { name="semTools"; version="0.5-5"; sha256="1dpsn43ifvfy5v8w2fqdy54yclmy0d3qlzix67lflr2r7isq7y6x"; depends=[lavaan pbivnorm]; }; + semTools = derive2 { name="semTools"; version="0.5-6"; sha256="1wnakz76c4mgkwvx3iycmvgrzqys860jg9zpkba0ln5c08ycw8pm"; depends=[lavaan pbivnorm]; }; semantic_dashboard = derive2 { name="semantic.dashboard"; version="0.2.1"; sha256="0518pdxgjjv8ql1aaysk64pv1pa01bbg3s7qdibw1v0c6pcf3adb"; depends=[checkmate glue htmltools shiny shiny_semantic]; }; - semdiag = derive2 { name="semdiag"; version="0.1.2"; sha256="0kjcflw7dn907zx6790w7hnf5db6bf549whfsc0c2r173kf13irp"; depends=[sem]; }; semdrw = derive2 { name="semdrw"; version="0.1.0"; sha256="16hm1ifgspnxnlf3rfg5ylmql2fq91ig8nc5953ggyhfrjwbqx15"; depends=[dplyr lavaan psych semPlot semTools shiny shinyAce]; }; semds = derive2 { name="semds"; version="0.9-6"; sha256="10kvcmcy6qa2r5sram6azqgzl528rghfxgw2f2bq2fvhhq127dzq"; depends=[minpack_lm pracma]; }; semiArtificial = derive2 { name="semiArtificial"; version="2.4.1"; sha256="0zsn3r5n7n3dsa02i194lr6ail7mizq9xp8x3kc5k17z4ckcfysd"; depends=[cluster CORElearn flexclust fpc ks logspline MASS mcclust nnet robustbase RSNNS StatMatch timeDate]; }; - semicmprskcoxmsm = derive2 { name="semicmprskcoxmsm"; version="0.1.0"; sha256="0bc79j78lp2znck706v15gr8q4zlq92zy4z452jmkh8hkb746qf7"; depends=[fastGHQuad ggplot2 Rcpp survival twang]; }; + semicmprskcoxmsm = derive2 { name="semicmprskcoxmsm"; version="0.2.0"; sha256="00nxmyp4g1pxzqrw3zd5il92vinzpy12wnjnpm33nbh4wx2i5356"; depends=[fastGHQuad ggplot2 Rcpp survival twang]; }; seminr = derive2 { name="seminr"; version="2.3.0"; sha256="0p7k2dvld5yfx5x5m97531b6kzkbhxbv308vkb7cakc1kwacj8sa"; depends=[DiagrammeR DiagrammeRsvg glue knitr lavaan rmarkdown testthat webp]; }; semmcmc = derive2 { name="semmcmc"; version="0.0.6"; sha256="13asqiw3zazh9k3p39582a0bzm00gmagls2w76kvpygilj4r5391"; depends=[MASS msm]; }; semnar = derive2 { name="semnar"; version="0.7.1"; sha256="0g6l4377i9wdwbcrdhdmsph68bd6qwc5mjlw824mpxn0ggg6vx72"; depends=[jsonlite leaflet lubridate magrittr urlshorteneR]; }; semnova = derive2 { name="semnova"; version="0.1-6"; sha256="1vghf8gy0vahwn3nq752wm0rbj33jdy69yqjzin94sk8xa42d0wi"; depends=[lavaan MASS Matrix]; }; semptools = derive2 { name="semptools"; version="0.2.9.3"; sha256="0apa8xls37nf9b8qagpsjdlmn607d6d3wjm143b7xc0jg97k98fs"; depends=[dplyr lavaan rlang]; }; semsfa = derive2 { name="semsfa"; version="1.1"; sha256="1k6i1m4r9y7j85rlrsgfjm8w15ax4xgf70xyvqwsszmf9950ldxx"; depends=[doParallel foreach gamlss iterators mgcv moments np]; }; - semtree = derive2 { name="semtree"; version="0.9.17"; sha256="1xkzvd5z6jsijx77d8fs63x7cdnnb2mzzn39hjl129kiq1xppibs"; depends=[bitops clisymbols cluster crayon digest future_apply ggplot2 lavaan OpenMx plotrix rpart rpart_plot sandwich sets stringr strucchange tidyr zoo]; }; + semtree = derive2 { name="semtree"; version="0.9.18"; sha256="0d3qrv9461kgcgy3m2rsld792him157xzmmv71qrlhkjcs4h5lb6"; depends=[bitops clisymbols cluster crayon data_table digest future_apply ggplot2 lavaan OpenMx plotrix rpart rpart_plot sandwich sets stringr strucchange tidyr zoo]; }; semver = derive2 { name="semver"; version="0.2.0"; sha256="10wpkyms2cix3bsin2q0qhkbl445pwwpa5gm2s4jjw1989namkxy"; depends=[assertthat Rcpp]; }; semverutils = derive2 { name="semverutils"; version="0.1.0"; sha256="0y3zh8n8bgs3ag8yy9cnp0i0xrn0iqflcbrya70glyb40148w9sw"; depends=[foreach R6]; }; - sen2r = derive2 { name="sen2r"; version="1.5.0"; sha256="1k47hb1rnarnz3sgcn1qb5hm0lfhpaw8q3gg8ll6avw5ilgqv2sj"; depends=[data_table doParallel foreach geojsonio httr jsonlite raster RcppTOML rgdal sf stars XML]; }; + sen2r = derive2 { name="sen2r"; version="1.5.1"; sha256="13qvfnz1g8b33rhpnfklil9lx8wsc215wccfqxi7xcsfn49jn2am"; depends=[data_table doParallel foreach geojsonio httr jsonlite raster RcppTOML rgdal sf stars XML]; }; sendgridr = derive2 { name="sendgridr"; version="0.4.3"; sha256="0gi4b8v6896dp1r984j8pvdxpqik3p7bhnza90vj5b1f4xvb2rcc"; depends=[base64enc cli emayili httr jsonlite magrittr usethis]; }; sendmailR = derive2 { name="sendmailR"; version="1.2-1"; sha256="0z7ipywnzgkhfvl4zb2fjwl1xq7b5wib296vn9c9qgbndj6b1zh4"; depends=[base64enc]; }; sense = derive2 { name="sense"; version="1.0.0"; sha256="09idl88n6jlgbn5apgk0vr1bwmqi624ikv1qfx7hvyi79ixg49f4"; depends=[bbotk data_table forcats lubridate Metrics mlr3 mlr3filters mlr3learners mlr3pipelines mlr3tuning mlr3viz paradox purrr readr tictoc visNetwork]; }; @@ -16456,20 +16091,19 @@ in with self; { sensitivity = derive2 { name="sensitivity"; version="1.27.0"; sha256="0yykx0d2am0jpdfxxz3xmizf27xpllhqp4zr81xkv0bp0z6ziigl"; depends=[boot foreach ggplot2 numbers Rcpp RcppArmadillo]; }; sensitivity2x2xk = derive2 { name="sensitivity2x2xk"; version="1.01"; sha256="1r829k939zzmi0j4chdaniajchcflmmjrl3a9hwnkg0wkfnjbvdl"; depends=[BiasedUrn mvtnorm]; }; sensitivityCalibration = derive2 { name="sensitivityCalibration"; version="0.0.1"; sha256="1fn07dra7dhpsg6f1yn1ayfpmvwaxma8cps94070nrpfwmdvi04g"; depends=[ggplot2 ggrepel plotly relaimpo splitstackshape stringi]; }; - sensitivityPStrat = derive2 { name="sensitivityPStrat"; version="1.0-6"; sha256="0rfzvkpz7dll3173gll6np65dyb40zms63fkvaiwn0lk4aryinlh"; depends=[survival]; }; sensitivityfull = derive2 { name="sensitivityfull"; version="1.5.6"; sha256="0g2gc4rms6gd34d23kxj50pjh0yq1h6yiybj4dxwyf6i2652irhq"; depends=[]; }; sensitivitymult = derive2 { name="sensitivitymult"; version="1.0.2"; sha256="19pyq6c7pvr3zkz3dz5p2hhfcvwm0im0bwaw4yhhgin4kqfnfjd5"; depends=[]; }; sensitivitymv = derive2 { name="sensitivitymv"; version="1.4.3"; sha256="1ga8mf92niiv1z3g3kv5ha5xdd1089aaqp19dz68kv8a396vhy1j"; depends=[]; }; sensitivitymw = derive2 { name="sensitivitymw"; version="2.1"; sha256="1sjq8lxw9iy5s5a19xaxm05wnz9yg4llpbnljydini511pyshzzx"; depends=[]; }; sensmediation = derive2 { name="sensmediation"; version="0.3.0"; sha256="0pmhlc5aqz1vwl4fpn38nkqy63pbq6q62fk9xjja4khrq35zh9yb"; depends=[maxLik mvtnorm]; }; - sensobol = derive2 { name="sensobol"; version="1.1.0"; sha256="11ahkgfydnswwp5bny4j2jys3wlkzxiwykivvm1znbp2nzghz5s9"; depends=[boot data_table deSolve ggplot2 lhs magrittr matrixStats randtoolbox Rcpp RcppArmadillo Rdpack Rfast rlang scales stringr]; }; + sensobol = derive2 { name="sensobol"; version="1.1.1"; sha256="19jdjppp4hp917l6syd0964l7gvkh4p3rswznk0v17061l65kiz5"; depends=[boot data_table deSolve ggplot2 lhs magrittr matrixStats randtoolbox Rcpp RcppArmadillo Rdpack Rfast rlang scales stringr]; }; sensory = derive2 { name="sensory"; version="1.1"; sha256="1zd0ajrymxi6gygcq9fqgwgy0g6c3cqz53x0k5m0ihbmh11rc7s7"; depends=[gtools MASS Matrix]; }; senstrat = derive2 { name="senstrat"; version="1.0.3"; sha256="0j6mb55v5ivqvk8nn8fjlzrbdgj6csa58yc6gy1g07m7gk2qz2np"; depends=[BiasedUrn MASS]; }; sentencepiece = derive2 { name="sentencepiece"; version="0.2.1"; sha256="0mwmgnkmahlik8nl14pkzi351jv9c00iylj7f5h6wkjbrizkdd34"; depends=[Rcpp]; }; sentiment_ai = derive2 { name="sentiment.ai"; version="0.1.1"; sha256="1wz34m5imzfwzf1ywidgb1xscsvf9nhri3w3wa2d8r7bk0nvlfjs"; depends=[data_table jsonlite reticulate roperators tensorflow tfhub xgboost]; }; sentimentr = derive2 { name="sentimentr"; version="2.9.0"; sha256="0i0lg2fl079wjv30lpqcxhx62miqakb9kzwwhrr4c18kl0bxbaav"; depends=[data_table ggplot2 lexicon stringi syuzhet textclean textshape]; }; sentometrics = derive2 { name="sentometrics"; version="1.0.0"; sha256="06qvwfgshr70n1qgf2zqjvycwwrak8d5hfyn3v5k2qzkfaxkihmm"; depends=[caret data_table foreach ggplot2 glmnet ISOweek quanteda Rcpp RcppArmadillo RcppParallel RcppRoll stringi]; }; - sentopics = derive2 { name="sentopics"; version="0.6.2"; sha256="1ix6rcjrp151dkqyqvbf3fg93h7g9714dlgr2q2r00sqpa5xjsdn"; depends=[data_table doFuture doRNG foreach future quanteda Rcpp RcppArmadillo RcppHungarian RcppProgress]; }; + sentopics = derive2 { name="sentopics"; version="0.7.0"; sha256="1lqkxkgflchcxhbrpv2znih225n625yr2gm1pswqhdw8anskqn4l"; depends=[data_table quanteda Rcpp RcppArmadillo RcppHungarian RcppProgress]; }; sentryR = derive2 { name="sentryR"; version="1.1.0"; sha256="0kz81dbxg4zyns829cjhjm2g88pxzaaxdk7c8qabvl0zgqys2chy"; depends=[httr jsonlite stringr tibble uuid]; }; separationplot = derive2 { name="separationplot"; version="1.3"; sha256="0ggyr4asp86hvdp4bwdkljz9b2gzdxm2y9nbz2srlgh3m4hlz2cs"; depends=[foreign Hmisc MASS RColorBrewer]; }; seplyr = derive2 { name="seplyr"; version="1.0.4"; sha256="09lv2jic2dhwl2pra56kf7087inbjg9b5461dyy2a31h5ji68j08"; depends=[dplyr rlang tidyr wrapr]; }; @@ -16477,7 +16111,6 @@ in with self; { seqDesign = derive2 { name="seqDesign"; version="1.2"; sha256="10p8ldj83mvhpcz1yas4xns5qh8zbs533na8nv87phngi8dsb76m"; depends=[survival]; }; seqHMM = derive2 { name="seqHMM"; version="1.2.0"; sha256="0zf0jyjam20z7w03pk1b8sn1x82bjr7qvinfrbi1xz2l5p5hl938"; depends=[gridBase igraph Matrix nloptr numDeriv Rcpp RcppArmadillo TraMineR]; }; seqICP = derive2 { name="seqICP"; version="1.1"; sha256="1dfhl7g47icjw38p9c0hyvnn3pwzw7pndywk22vgcyfhiz23xjcp"; depends=[dHSIC mgcv]; }; - seqR = derive2 { name="seqR"; version="1.0.1"; sha256="0a80w7pyf2hbyzlm010xj3xv1dzkdc2w9s48hhfbsig88f497ki7"; depends=[Matrix Rcpp RcppParallel rlang slam]; }; seqRFLP = derive2 { name="seqRFLP"; version="1.0.1"; sha256="1i98hm8wgwr8b6hd237y2i9i0xgn35w4n2rxy4lqc5zq71gkwkvk"; depends=[]; }; seqest = derive2 { name="seqest"; version="1.0.1"; sha256="06zk87n26305m0hy6lg7v3bpxmsqvinwkvw3dvmzkqp5jdkhwikb"; depends=[foreach geepack MASS mvtnorm nnet Rcpp RcppArmadillo VGAM]; }; seqgendiff = derive2 { name="seqgendiff"; version="1.2.3"; sha256="0vyrs4i3q3lyqx0b1as7h2rm3s5kbapq6jxzag8dwhf0ch7yz8gv"; depends=[assertthat cate clue irlba matchingR pdist sva]; }; @@ -16487,7 +16120,6 @@ in with self; { seqminer = derive2 { name="seqminer"; version="8.4"; sha256="1mbx1hw9dhgry7hhan43g6aiz2lyd5api7wxq3fwajyzjrc6p1g8"; depends=[]; }; seqmon = derive2 { name="seqmon"; version="2.4"; sha256="1aqrg9aqvsabg5mm9jfj5vaxxaapfs1qw3yyzbx7vsspcgjdhyca"; depends=[]; }; seqtest = derive2 { name="seqtest"; version="0.1-0"; sha256="1bdfww9szh7h278id5xpfc39mxkcix3yvsdwc68wx3q3x0wxhqhq"; depends=[]; }; - sequence = derive2 { name="sequence"; version="2.0"; sha256="0r5h96gcp18lwgrl2pjlr71xqspkf6qmm1m0xjq5vadalfa7y294"; depends=[]; }; sequences = derive2 { name="sequences"; version="0.5.9"; sha256="17571m525b6a3k4f0m936wfq401181gx1fpb7x4v0fhaldzdmk3a"; depends=[Rcpp]; }; sequenza = derive2 { name="sequenza"; version="3.0.0"; sha256="13l16lacdcf7fn96yj3xqxap0l19ma9ppkxxx5qk9f5abbvdk303"; depends=[copynumber iotools pbapply readr seqminer squash]; }; sergeant = derive2 { name="sergeant"; version="0.9.1"; sha256="0mgrrlny1qfddznyc34awh8vkbjnyskbyqrxszdhsm2c5wgp2nwh"; depends=[bit64 DBI dbplyr dplyr htmltools httr jsonlite magrittr purrr readr scales stringi tibble]; }; @@ -16513,12 +16145,13 @@ in with self; { severity = derive2 { name="severity"; version="2.0"; sha256="1mp19y2pn7nl9m8xfljc515kk5dirv0r2kypazpmd956lcivziqq"; depends=[]; }; sf = derive2 { name="sf"; version="1.0-7"; sha256="0lsl4rh4lbv386hxlsnnwsjb5x1n9d3z0ckjmxakmmrqjjmiywyh"; depends=[classInt DBI magrittr Rcpp s2 units]; }; sfa = derive2 { name="sfa"; version="1.0-1"; sha256="1acqxgydf8j5csdkx0yf169x3yaa31r0ccdrqarh6vj1hacm89ad"; depends=[]; }; - sfaR = derive2 { name="sfaR"; version="0.1.0"; sha256="1lgazgj6xfg0syspw6wzmd4xyczydhdgghpaf9kgrqvqfkaqcf8p"; depends=[dplyr emdbook fBasics Formula gsl marqLevAlg MASS maxLik moments nleqslv numDeriv primes qrng randtoolbox trustOptim ucminf]; }; + sfaR = derive2 { name="sfaR"; version="0.1.1"; sha256="1j8ans7lhssq64crp2fwfbl6n09h7zl7y6s8zwkdmxgvydvh9n22"; depends=[dplyr emdbook fBasics Formula gsl marqLevAlg MASS maxLik moments nleqslv numDeriv primes qrng randtoolbox trustOptim ucminf]; }; sfadv = derive2 { name="sfadv"; version="1.0.1"; sha256="1rfpm6km5pckwhqgpvidm6qsj5sjdaqqj5b0sgvpslivfa4c80cr"; depends=[gmm minpack_lm]; }; sfarrow = derive2 { name="sfarrow"; version="0.4.1"; sha256="1hslyha1w5x1ncawbwbx792cqa3031v26g9lssmb0n1hihzvfp8g"; depends=[arrow dplyr jsonlite sf]; }; sfc = derive2 { name="sfc"; version="0.1.0"; sha256="0cm4mfcfd9bhf2j5fppsihzrfipnldb6q3xradd88z9pwgrkfx2a"; depends=[dplyr sna tidyr triangle zoo]; }; sfcr = derive2 { name="sfcr"; version="0.2.1"; sha256="05ip1z6rh0k7az0y7nwp9c6rv1s53i0i698yfhx46lfnhzz87anf"; depends=[dplyr expm forcats igraph kableExtra magrittr purrr Rcpp RcppArmadillo Rdpack rlang rootSolve stringr tibble tidyr tidyselect vctrs]; }; sfdct = derive2 { name="sfdct"; version="0.1.0"; sha256="0p3ipp6x8vnsi94078n098yk9wglnawvzh19imcgk2c1l5lazwgf"; depends=[dplyr RTriangle sf sp tibble]; }; + sfdep = derive2 { name="sfdep"; version="0.1.0"; sha256="0b81kpbns6br93yxwa7paqrxwq0qafq5rab4p41ay9fi7w3brgix"; depends=[cli magrittr rlang sf spdep]; }; sfheaders = derive2 { name="sfheaders"; version="0.4.0"; sha256="0ig02nszrs6fkjkrkqibp23n4a8qr4i09yz7l741yjd0308ddg46"; depends=[geometries Rcpp]; }; sfhotspot = derive2 { name="sfhotspot"; version="0.2.0"; sha256="1fy0y3nshfi6951qfplmsnrhlw24hwapifqwrffigbk5cq7ls9d3"; depends=[rlang sf SpatialKDE spdep tibble]; }; sfinx = derive2 { name="sfinx"; version="1.7.99"; sha256="14v47y00qwvc2s0vzjw19hwn85nzj8lna539c75qq6zkn6kir6va"; depends=[]; }; @@ -16536,18 +16169,19 @@ in with self; { sglOptim = derive2 { name="sglOptim"; version="1.3.8"; sha256="15bkkvgp9v9vsp65wps48g3c2fa0fj1025hbrziywq14j7wayyjr"; depends=[BH doParallel foreach Matrix Rcpp RcppArmadillo RcppProgress]; }; sglasso = derive2 { name="sglasso"; version="1.2.4"; sha256="0sdarn39857405ndmqyka5ksvwczb5ifl5aap96wpm625iz2a1pi"; depends=[igraph Matrix]; }; sglg = derive2 { name="sglg"; version="0.2.1"; sha256="1smvzlbcn7gjfb2jnzqdhda607f88kh14wapidc3vhz4l0wnn9xs"; depends=[AdequacyModel Formula ggplot2 gridExtra magrittr moments plot3D plotly pracma progress Rcpp survival TeachingSampling]; }; - sglr = derive2 { name="sglr"; version="0.7"; sha256="11gjbvq51xq7xbmpziyzwqfzf4avyxj2wpiz0kp4vfdj3v7p4fp9"; depends=[ggplot2 shiny]; }; + sglr = derive2 { name="sglr"; version="0.8"; sha256="0f4ndx0a50km7iwwqxbxv10rb5c96210vgimaskjlmsbpaqna601"; depends=[ggplot2 rlang shiny]; }; sgmcmc = derive2 { name="sgmcmc"; version="0.2.5"; sha256="0lq79c7i6bklh8c63wx3k6h9mk8s1abbr0hc41drcm96bbbg0aal"; depends=[reticulate tensorflow]; }; sgmodel = derive2 { name="sgmodel"; version="0.1.1"; sha256="1i13vp91i8s61ylsyg0iij1sfclwif7v91slr2srl8ddz6lm23nx"; depends=[ggplot2 ramify Rtauchen]; }; sgo = derive2 { name="sgo"; version="0.9.1"; sha256="1fxvrfbpj10g944dzhb05xam9hmvmjj4lq5lxzdpryxw97ym6nxx"; depends=[]; }; sgof = derive2 { name="sgof"; version="2.3.2"; sha256="020kc6h9iw4qhb9pdi7wk8vcy54dp10x0z3nlq3gwwbj1l9izc44"; depends=[poibin]; }; sgpv = derive2 { name="sgpv"; version="1.1.0"; sha256="0w0slnnw239a34c0h7xr76c4m0rfwl0hq61g9n12vzxd6lfh3gqz"; depends=[]; }; - sgr = derive2 { name="sgr"; version="1.3"; sha256="0zxmrbv3fyb686hcgfy2w1w2jffxf41ab8yc90dsgf931s9c55wn"; depends=[MASS]; }; + sgr = derive2 { name="sgr"; version="1.3.1"; sha256="0m7rl3yii6zz4p21aiaifj1ram6gi6x5kywpyx9yjan79180q8h7"; depends=[MASS]; }; sgstar = derive2 { name="sgstar"; version="0.1.2"; sha256="0b3bw10lf5h4kgg3c0s3lxsafaffhn8gc9kxmg7bg35lbxv0r1vn"; depends=[dplyr ggplot2 tidyr]; }; sgt = derive2 { name="sgt"; version="2.0"; sha256="0qb3maj5idwafs40fpdfrwzkadnh5yg8fvfzfs51p9yy69kbmlkx"; depends=[numDeriv optimx]; }; shades = derive2 { name="shades"; version="1.4.0"; sha256="1zg95sjhrfvbdlfc387g9p0vnb8nb6agdk1mb3wq3kwkm2da0bqj"; depends=[]; }; shadow = derive2 { name="shadow"; version="0.7.1"; sha256="055064jwxf9fkvw95w8if5aqcxrgg3b224qs1c81v8m8adr46v0r"; depends=[raster rgeos sp]; }; - shadowtext = derive2 { name="shadowtext"; version="0.1.1"; sha256="01h0w3b02r8snjkx5sxkf2x8xm4gd0r8jm27xqz9cv6hgqfmh1pb"; depends=[ggplot2 scales]; }; + shadowr = derive2 { name="shadowr"; version="0.0.1"; sha256="103688x44lkwmhxk32viblpal0k8l51s3rchhgjfi0mxiz3i1akc"; depends=[RSelenium]; }; + shadowtext = derive2 { name="shadowtext"; version="0.1.2"; sha256="0zdfidrcnmxmfhngv86ppxrjmpmz9kl78l4yfah2lc5vgmrlwg15"; depends=[ggplot2 scales]; }; shallot = derive2 { name="shallot"; version="0.4.10"; sha256="05ciafpahcrsh9kwg1yqwbmanvkbv1i1cjjpvq3w4cdqkhn4fam7"; depends=[commonsMath rscala]; }; shape = derive2 { name="shape"; version="1.4.6"; sha256="0yqbrrx2ywmfl99s6d1n6jblc63k1mxbiqyv8y0kq8jws1g3w45r"; depends=[]; }; shapeNA = derive2 { name="shapeNA"; version="0.0.2"; sha256="1ivp8kvnacr2fx3rs7ckzdpinb6bifzzw7riskzj95lygjlkvabw"; depends=[]; }; @@ -16559,7 +16193,6 @@ in with self; { shar = derive2 { name="shar"; version="1.3.2"; sha256="1fks9gpm01q5phicgv1znl2d7j63w3m0w63xd1a38qypvqd9gqxp"; depends=[classInt raster spatstat_core spatstat_geom spatstat_random]; }; sharpData = derive2 { name="sharpData"; version="1.4"; sha256="1pnza52wqczjds4vp2fy9ky41y7lyj9ywam11nsr0mpv63jglnc5"; depends=[KernSmooth quadprog]; }; sharpPen = derive2 { name="sharpPen"; version="1.7"; sha256="1nhmxfyrzmm6qgwrlfc046lm9n8n5r62ym44956zg2z1m2vhnysf"; depends=[glmnet KernSmooth MASS Matrix np]; }; - sharpeRratio = derive2 { name="sharpeRratio"; version="1.4.2"; sha256="1l0ix779kzci647v4irxs0j83zwfchd51k8576ivis7cr5f1a9v6"; depends=[ghyp Rcpp]; }; sharpr2 = derive2 { name="sharpr2"; version="1.1.1.0"; sha256="1r7anfr296l5sbhgry6rb15hlca6mpcm24qssdzz9bckavyfvqgi"; depends=[Matrix mvtnorm]; }; sharpshootR = derive2 { name="sharpshootR"; version="1.9"; sha256="1916zvmj6k2pjnzzlxzx5r4v2gkqz46fvrgkiqbhhg7zwv94b8wf"; depends=[ape aqp circular cluster curl digest e1071 Hmisc igraph lattice plyr RColorBrewer reshape2 scales soilDB sp stringi vegan]; }; sharx = derive2 { name="sharx"; version="1.0-5"; sha256="10sfjg6946jfk4051da0w1v89503av40wckqaabr12syf8kn0aw8"; depends=[dclone dcmle Formula]; }; @@ -16578,8 +16211,8 @@ in with self; { shiny_router = derive2 { name="shiny.router"; version="0.2.2"; sha256="1jxk1hxi42kyi5dahszhl9nzppa99svk1vhwf2d15apfrg2d6ivc"; depends=[htmltools magrittr shiny]; }; shiny_semantic = derive2 { name="shiny.semantic"; version="0.4.3"; sha256="124bxgbbzx4xkzxqzr16brqdm12ra0pvx1qhqkvp8alvjm0s54vg"; depends=[glue htmltools htmlwidgets jsonlite magrittr purrr R6 shiny]; }; shiny_worker = derive2 { name="shiny.worker"; version="0.0.1"; sha256="1l30dx46s3q1x9nd42r6dracd3lqkjk80r9jyjqy8lmdsq48300i"; depends=[future R6 shiny]; }; - shinyAce = derive2 { name="shinyAce"; version="0.4.1"; sha256="1m33dfm2kjirvgix7ybv1kbzgjkicdpv411g9c0q3fw6rnyhfxxn"; depends=[jsonlite shiny]; }; - shinyBS = derive2 { name="shinyBS"; version="0.61"; sha256="0rhim4mbp4x9vvm7xkmpl7mhb9qd1gr96cr4dv330v863ra2kgji"; depends=[htmltools shiny]; }; + shinyAce = derive2 { name="shinyAce"; version="0.4.2"; sha256="12mqvdh6rxsr61pc3pzla95r5f4l7xagjs2rcdr7c2lbqyxpx6aa"; depends=[jsonlite shiny]; }; + shinyBS = derive2 { name="shinyBS"; version="0.61.1"; sha256="0h51685a9qll4agayldjyryi60ih969219ibg071slv0613p5v8a"; depends=[htmltools shiny]; }; shinyChakraSlider = derive2 { name="shinyChakraSlider"; version="0.1.0"; sha256="1vsbw9dm8ai2w6mfdaksxh13ryh2awajqgkcwcxb99l47h17rvpy"; depends=[htmltools reactR shiny]; }; shinyChakraUI = derive2 { name="shinyChakraUI"; version="1.1.1"; sha256="08qy6qrrprqlarwd3kab9s92dlx51jkhk7mikkf0mdhl6n2q26py"; depends=[fontawesome formatR htmltools jsonlite reactR rlang shiny stringr]; }; shinyCyJS = derive2 { name="shinyCyJS"; version="0.0.11"; sha256="1wvrv5hdr74d2a68iwy76ffawmy4mpw0swrngw41zqpjd6hjiyxd"; depends=[htmlwidgets]; }; @@ -16587,6 +16220,7 @@ in with self; { shinyEffects = derive2 { name="shinyEffects"; version="0.2.0"; sha256="1ajar09hmrk7vcw89wkgvkz2yl0cfnkz915b57w1lmbvpxzgsq3i"; depends=[htmltools shiny]; }; shinyFeedback = derive2 { name="shinyFeedback"; version="0.4.0"; sha256="1xfznq2d4wkk0b0y4k25rwg4d3bhn3gxlkf3chfqk44f4rgril11"; depends=[fontawesome htmltools jsonlite shiny]; }; shinyFiles = derive2 { name="shinyFiles"; version="0.9.1"; sha256="0f8dfdiar376lx0979ccyghgx5rhr08v5z3z60asrrjsxlq4cs85"; depends=[fs htmltools jsonlite shiny tibble]; }; + shinyGizmo = derive2 { name="shinyGizmo"; version="0.1"; sha256="1n6mpf0iw2zk6bp1p5xq53lrmgpf7zr23kmla5b75yw9fvrrh0ks"; depends=[glue htmltools magrittr purrr shiny shinyWidgets]; }; shinyGovstyle = derive2 { name="shinyGovstyle"; version="0.0.8"; sha256="1czyz51k0xm62b9bzcsygslm2nd3fnmll4wjxwimlngy00rnjnng"; depends=[htmltools jsonlite shiny shinyjs]; }; shinyHeatmaply = derive2 { name="shinyHeatmaply"; version="0.2.0"; sha256="1n7c7dvvb9kqay2phcf0bkwi990x1cjl7js6pq05xx7rli5bc5h4"; depends=[dplyr heatmaply htmltools plotly readxl rmarkdown shiny xtable]; }; shinyIRT = derive2 { name="shinyIRT"; version="0.1"; sha256="01x7nhjs1dx2ldwznhbavc5vzqhgkn73xg395vlf2hgzbxa2ydvj"; depends=[irtoys magrittr mirt psych readxl shiny shinycssloaders shinydashboard]; }; @@ -16607,17 +16241,17 @@ in with self; { shinySearchbar = derive2 { name="shinySearchbar"; version="1.0.0"; sha256="1v80380vym31aw0i1ghwlbdi2xkf3n59w2as62ywqi79025x3w6y"; depends=[jsonlite shiny]; }; shinySelect = derive2 { name="shinySelect"; version="1.0.0"; sha256="1s96ipcicpn7aj19rvsa48cm6izk2m84sd2w8qicqp7b5brg4jla"; depends=[fontawesome htmltools reactR shiny]; }; shinyShortcut = derive2 { name="shinyShortcut"; version="0.1.0"; sha256="101wz9s4rk7fbaqgm0r2v3v8za20vdxwq4vhkz8xr7y5pr65sxiq"; depends=[]; }; + shinyTempSignal = derive2 { name="shinyTempSignal"; version="0.0.2"; sha256="1dgfbnm3jj0y1cx0mj73813fq314qw5i43rl5ilsw4af89jllgnj"; depends=[ape aTSA Cairo config forecast ggplot2 ggpubr ggtree golem shiny shinydashboard shinyjs stringr treeio TSA]; }; shinyTime = derive2 { name="shinyTime"; version="1.0.1"; sha256="1d830wf7d5ki7frbr1vgy9d0vllyfcylq7pfkspjkz64b2xfhah3"; depends=[htmltools shiny]; }; shinyToastify = derive2 { name="shinyToastify"; version="2.0.0"; sha256="0ipqwgl89pjiycwg78p0db45lbzry989kn6aqjsf79lpvghnk5qs"; depends=[fontawesome htmltools reactR shiny]; }; shinyTree = derive2 { name="shinyTree"; version="0.2.7"; sha256="0jfx2capckv7hf2yx3fn8i4rcmhi222ah91jnmhg497x8wgz31s3"; depends=[htmlwidgets jsonlite promises shiny stringr]; }; - shinyWidgets = derive2 { name="shinyWidgets"; version="0.6.4"; sha256="1j7pii40zc60ny1d5027pjagi1rrcnb9kxn4q9jmd9xv84y5b8sj"; depends=[bslib htmltools jsonlite sass shiny]; }; + shinyWidgets = derive2 { name="shinyWidgets"; version="0.7.0"; sha256="04b7sdyclqbi8s20w7ymzj88y5z8jfrfx7cg28cshqb8m6vqmjyl"; depends=[bslib htmltools jsonlite rlang sass shiny]; }; shinyaframe = derive2 { name="shinyaframe"; version="1.0.1"; sha256="1flhgsm4q7p5acb41v73pf8ni92y9dwdppxjb9czlz1sxwf03p1s"; depends=[htmltools htmlwidgets shiny]; }; shinyalert = derive2 { name="shinyalert"; version="3.0.0"; sha256="1gws8vshnqngm55rnw22qjlqsn9d240p734dnjvsv96d22b8bsnl"; depends=[htmltools knitr shiny uuid]; }; shinyanimate = derive2 { name="shinyanimate"; version="0.3.0"; sha256="0vshid5mfq006cprjj61d0g7ajyc3plc66x55c5jjmijwbp6pw7a"; depends=[shiny]; }; shinyauthr = derive2 { name="shinyauthr"; version="1.0.0"; sha256="0apaqjkxpr96kx9indl0pifk5y75gdx5npfcvxfg5k2crpx9vmxk"; depends=[dplyr glue rlang shiny shinyjs sodium]; }; - shinybootstrap2 = derive2 { name="shinybootstrap2"; version="0.2.1"; sha256="17634l3swlvgj1sv56nvrpgd6rqv7y7qjq0gygljbrgpwmfj198c"; depends=[htmltools jsonlite shiny]; }; - shinybrms = derive2 { name="shinybrms"; version="1.6.0"; sha256="0dbj0sl65sgg293knrarj7rc5fc8xvhdh601b2srs0zqp6vjzhbn"; depends=[brms rlang rstan shiny]; }; - shinybusy = derive2 { name="shinybusy"; version="0.3.0"; sha256="07cx7g55sq36i2fpnf2fz6d4a4dqys00j8fbkfj9kg61gfban5s3"; depends=[htmltools htmlwidgets jsonlite shiny]; }; + shinybrms = derive2 { name="shinybrms"; version="1.7.0"; sha256="0188sqrgjc1kmqppdajrhm2gsnyz87gmq0l20lv245iz4vk5rx0v"; depends=[brms rlang rstan shiny]; }; + shinybusy = derive2 { name="shinybusy"; version="0.3.1"; sha256="1c87456ipg4qq8sb7xjn3q72dsfr2hl2l73nncj4i87fgvm85mkl"; depends=[htmltools htmlwidgets jsonlite shiny]; }; shinycssloaders = derive2 { name="shinycssloaders"; version="1.0.0"; sha256="0r3xm273lhdhzbs2mkgw1m2kwb7z1dh1pzya8yxy5vacda1l2ikl"; depends=[digest glue shiny]; }; shinycustomloader = derive2 { name="shinycustomloader"; version="0.9.0"; sha256="1klx71vr26g0gjf6hbiia1qidqii5d467i1sdjvlrg1hxdcggqff"; depends=[glue shiny]; }; shinydashboard = derive2 { name="shinydashboard"; version="0.7.2"; sha256="0hrqkwlpb8rnmp5j74p134g4c4cl16icmwc2ip6k1634fa2y8vm5"; depends=[htmltools promises shiny]; }; @@ -16633,7 +16267,7 @@ in with self; { shinyjqui = derive2 { name="shinyjqui"; version="0.4.1"; sha256="135gwz7syyb6pbn0lkvmq0v1c6r1zivavnqhi1rnzbbzlysi27v1"; depends=[htmltools htmlwidgets jsonlite rlang shiny]; }; shinyjs = derive2 { name="shinyjs"; version="2.1.0"; sha256="1id9gsrkr28xl80a8794in17rxmmz06zqvd5hlns7mqz3fzhrhky"; depends=[digest jsonlite shiny]; }; shinyloadtest = derive2 { name="shinyloadtest"; version="1.1.0"; sha256="0684p9anbc3qdn4rqkxp33nm0d04zb264b3blwa23pa5akis2klq"; depends=[curl dplyr ggplot2 httpuv jsonlite magrittr R6 rlang scales stringr svglite vroom websocket xml2]; }; - shinylogs = derive2 { name="shinylogs"; version="0.2.0"; sha256="00rswic0kbrzr6ix88avsxdfnv2bx94kxjkln8li14zaqsdksivm"; depends=[anytime bit64 data_table digest htmltools jsonlite nanotime shiny]; }; + shinylogs = derive2 { name="shinylogs"; version="0.2.1"; sha256="1w19z0zw2k3ni7ckg04q7j0jx4k3cm490z0qccj1smq01wn3czjj"; depends=[anytime bit64 data_table digest htmltools jsonlite nanotime shiny]; }; shinymanager = derive2 { name="shinymanager"; version="1.0.400"; sha256="1np2yp5pn8g9i4jhysfgprmdn13cpw4vaaagrd72rnk2r4hpmyx4"; depends=[billboarder DBI DT htmltools openssl R_utils R6 RSQLite scrypt shiny]; }; shinymaterial = derive2 { name="shinymaterial"; version="1.2.0"; sha256="0nqakim0cx722sydbv12kgva1nis7h2i0lrvi9c0h54733x7lbza"; depends=[jsonlite sass shiny]; }; shinymeta = derive2 { name="shinymeta"; version="0.2.0.3"; sha256="1lizg5sjg0f2axr9vk8z4w43lbyim83gd4dzx91dygknv3kgyp89"; depends=[callr fastmap fs htmltools rlang shiny sourcetools styler]; }; @@ -16643,7 +16277,6 @@ in with self; { shinypanels = derive2 { name="shinypanels"; version="0.5.0"; sha256="1rslz9wl3gx11dm6il77j4k5swxvcfy5mf0zffbs4zk8xjgpzzj6"; depends=[glue htmltools shiny shinyjs]; }; shinypivottabler = derive2 { name="shinypivottabler"; version="1.0"; sha256="04mdzd0j9y1w0iifpgd870haj5b9q8sdmkj4lws0svhkli3ym097"; depends=[colourpicker htmltools openxlsx pivottabler shiny]; }; shinyr = derive2 { name="shinyr"; version="0.3.0"; sha256="1r4xpb5x0711jbh4v8wkfhgg3s7l1sxqr6i90wsh0k0q3501fs2i"; depends=[caret corrplot dplyr e1071 knitr nnet plotly randomForest RColorBrewer shiny shinydashboard tm wordcloud]; }; - shinyrecap = derive2 { name="shinyrecap"; version="0.1.0"; sha256="1mic7azxz2in67g3a2ir550w8psh6kc75p6hja6m62a0yy7j2n92"; depends=[CARE1 coda conting dga future ggplot2 ipc LCMCR promises Rcapture reshape shiny shinycssloaders testthat]; }; shinyrecipes = derive2 { name="shinyrecipes"; version="0.1.0"; sha256="1b4l27qsl1lpssh3jv1pqmw2mq8hanfj0m269yp5618nd5nxd2ck"; depends=[dplyr DT esquisse miniUI purrr recipes rstudioapi shiny shinyglide shinyWidgets sortable stringr tidyr]; }; shinyreforms = derive2 { name="shinyreforms"; version="0.0.1"; sha256="1g1blc57c6zkca0m52bqkw8jwgpplabns07x1cwkk46dmv6sgqci"; depends=[htmltools R6 shiny]; }; shinyscreenshot = derive2 { name="shinyscreenshot"; version="0.2.0"; sha256="01vm2wc0r3j20hj65q9f0wgffj7r5q2cg5p5mywh1p2rkslgikk3"; depends=[base64enc jsonlite shiny uuid]; }; @@ -16651,10 +16284,11 @@ in with self; { shinystan = derive2 { name="shinystan"; version="2.6.0"; sha256="0afm703zriyqprz1zvypir80lq2ylfff3qvj5i7p9n365mm8b150"; depends=[bayesplot colourpicker DT dygraphs ggplot2 gridExtra gtools markdown reshape2 rstan shiny shinyjs shinythemes threejs xtable xts]; }; shinysurveys = derive2 { name="shinysurveys"; version="0.2.0"; sha256="01bj0g8r71jng03psw9dcjann78divy2xr5yn6y1pa82d96s46b5"; depends=[htmltools jsonlite sass shiny]; }; shinytest = derive2 { name="shinytest"; version="1.5.1"; sha256="0pjcdkyv1f94fxzpbc9m02kdv8v6jh6dmxsc1kmr22qcj1cbql8s"; depends=[assertthat callr crayon debugme digest htmlwidgets httpuv httr jsonlite parsedate pingr R6 rematch rlang rstudioapi shiny testthat webdriver withr]; }; + shinytest2 = derive2 { name="shinytest2"; version="0.1.0"; sha256="1qjx4lpnaqiqlm2lilpqcwjw6w5fli9jd2r8miix9fykpnp2h47b"; depends=[callr checkmate chromote crayon ellipsis fs httr jsonlite pingr R6 rlang rmarkdown shiny testthat withr]; }; shinythemes = derive2 { name="shinythemes"; version="1.2.0"; sha256="0qr9bfxw8afxns44i2j4msignf6g5qb2nzpay2lpv343rrlqbmip"; depends=[shiny]; }; shinytitle = derive2 { name="shinytitle"; version="0.1.0"; sha256="1k05s2fmqvz3drnqkxcpxvvmn0sisdqivg7i4x5c6649b97rsbsx"; depends=[shiny]; }; shinytoastr = derive2 { name="shinytoastr"; version="2.1.1"; sha256="01j2z4gf1wxblrjayykwxdr2s8394i7k930x8g4hmrj7c9pv264n"; depends=[shiny]; }; - shinyvalidate = derive2 { name="shinyvalidate"; version="0.1.1"; sha256="04sl1z8i3d2pndxzylc80m435jwjik2yl5g82gaylhz7kj3fqxn4"; depends=[glue htmltools rlang shiny]; }; + shinyvalidate = derive2 { name="shinyvalidate"; version="0.1.2"; sha256="0mps6a1rkadbxf11lcxx4njfwbgpzyx63wndhlwb0dzyz5d02la7"; depends=[glue htmltools rlang shiny]; }; shipunov = derive2 { name="shipunov"; version="1.17"; sha256="15gakqapgi9yl9i31nqw1h6p89qphmlyn9dfhmf2ps3ki4ijq44k"; depends=[PBSmapping]; }; shock = derive2 { name="shock"; version="1.0"; sha256="11m52al591xjznl62q1waxsg5m1a1afmd0yqcc5zsjlrplykg4lp"; depends=[capushe GGMselect glasso igraph mvtnorm]; }; shopifyr = derive2 { name="shopifyr"; version="1.0.0"; sha256="05hih1v5vvr7vmwarizsdx8517g74s96fdsz3klcz3g12idx1nqn"; depends=[curl jsonlite R6]; }; @@ -16672,23 +16306,20 @@ in with self; { shuffleCI = derive2 { name="shuffleCI"; version="0.1.0"; sha256="1n9k28m1fcnw1my9a7v0gy9waygd48lab45vj9k2wwijbc325zai"; depends=[plotrix]; }; shutterplot = derive2 { name="shutterplot"; version="0.1.0"; sha256="129jv20m0dinb07lwiz9fxv4z7sxshcmjab2g0p5vrv8jlp9a0yv"; depends=[]; }; shutterstock = derive2 { name="shutterstock"; version="0.1.0"; sha256="1vqbrjbwl2gdcf607f51cdzkjbkmk11n08mzx01j7bwcd278ny8r"; depends=[httr jsonlite]; }; - siar = derive2 { name="siar"; version="4.2"; sha256="1c4z72jr81dzkp9xqyrrkwjsalvvksl67pnbaadkc52v84fhzx3r"; depends=[bayesm coda hdrcde MASS mnormt spatstat]; }; sicegar = derive2 { name="sicegar"; version="0.2.4"; sha256="14xv3rir65fmrx89gjxskk32ldp5zz8m8jv5ybgh5jrwm3x1k0fb"; depends=[dplyr fBasics ggplot2 minpack_lm]; }; siconfir = derive2 { name="siconfir"; version="1.0.5"; sha256="0xmn8rjlfqjr73qgdm5zih6hf52f5qy4n9zgqdmfmkv73a2pnam1"; depends=[dplyr httr magrittr purrr tibble tidyr]; }; siconvr = derive2 { name="siconvr"; version="0.0.1"; sha256="178bqjdx96lk8npa26w29aanal7g6x22b6p1p8gsbyi6h8acgkh0"; depends=[cli data_table dplyr httr magrittr tibble]; }; - sideChannelAttack = derive2 { name="sideChannelAttack"; version="1.0-6"; sha256="1xcsy1h8gc8a4f9nzs7zv8x6v55g1pg8vy1kg64iqxm0gnz2f20l"; depends=[ade4 corpcor infotheo MASS mmap]; }; sidier = derive2 { name="sidier"; version="4.1.0"; sha256="0zayhvhaq0q00rpgy0z01rhf3lcc3791klc8b30pdj627cl9xj01"; depends=[ape ggmap ggplot2 gridBase igraph network]; }; sidrar = derive2 { name="sidrar"; version="0.2.7"; sha256="120xb1yigi99irb3bn7w9var2h6adpc7ajfw754x3jvrakmfi6jk"; depends=[magrittr RCurl rjson rvest stringr xml2]; }; siebanxicor = derive2 { name="siebanxicor"; version="1.0.0"; sha256="0bnpqqhqvqq9kxvzljzp4d5aw9drh78cwyxyqzdvshijl7mmqjwc"; depends=[httr jsonlite]; }; sievePH = derive2 { name="sievePH"; version="1.0.1"; sha256="1hdccfq39sw3jsakv8lrnjp8mmc431l6ka1g9r53ihrz18s6c39v"; depends=[survival]; }; sievetest = derive2 { name="sievetest"; version="1.2.3"; sha256="17qrm7axvlr2yzp8brbibp26f8qdpqm85hc2kjzxm5zqwfvd6dfs"; depends=[]; }; sift = derive2 { name="sift"; version="0.1.0"; sha256="030vv2rha5d20045bwsp6ihdcgiw9glnchyahpzwym3m6fnkg0y5"; depends=[cpp11 dplyr glue pastecs purrr rlang tibble tidyr tidyselect]; }; - sig = derive2 { name="sig"; version="0.0-5"; sha256="084wwpj5mnmq4k98ijbv23z80sj4axadc7c6hn3917dazsaa6ngn"; depends=[]; }; + sig = derive2 { name="sig"; version="0.0-6"; sha256="02narc84by24rldna6qi8vyygxfarhbaddv1kdmb1ywhbsq86597"; depends=[]; }; sigInt = derive2 { name="sigInt"; version="0.2.0"; sha256="1y3qbfsynssam05q4947zqd0dkrpcnq5pla409i3xy511wv9702d"; depends=[Formula MASS maxLik pbivnorm randomForest stringr xtable]; }; sigclust = derive2 { name="sigclust"; version="1.1.0"; sha256="0151v7lr4n4yyn93j0s06gzc9jh9xhdgvfw6kvpfy24jl6wdii7g"; depends=[]; }; - sigmaNet = derive2 { name="sigmaNet"; version="1.1.0"; sha256="1i0xikwad9kiyrqxi1klkc4h4hyqfkxr388sw4mrx9pswfpbv3xr"; depends=[htmlwidgets igraph jsonlite RColorBrewer]; }; sigmajs = derive2 { name="sigmajs"; version="0.1.5"; sha256="1d26llpgnj687b8rwgbyhw88zakp334n4a9gabf72qwrg4awm1v5"; depends=[crosstalk dplyr htmltools htmlwidgets igraph jsonlite magrittr purrr scales shiny]; }; - sigminer = derive2 { name="sigminer"; version="2.1.3"; sha256="0zgdrja8iv8i0rknz925z7zb6qxfmfijw28j523rai6kw4hqzvnf"; depends=[cli cowplot data_table dplyr furrr future ggplot2 ggpubr maftools magrittr NMF purrr Rcpp rlang tidyr]; }; + sigminer = derive2 { name="sigminer"; version="2.1.4"; sha256="1vay08smbqps0za6m2q2rgm3scrpcqgypzc0ylgxllq43wh3s9b2"; depends=[cli cowplot data_table dplyr furrr future ggplot2 ggpubr maftools magrittr NMF purrr Rcpp rlang tidyr]; }; sigmoid = derive2 { name="sigmoid"; version="0.3.0"; sha256="1sa6nmip3fizdk3r47pvx0h3qldn267arpmid0wa1pb7k5j2g682"; depends=[]; }; signal = derive2 { name="signal"; version="0.7-7"; sha256="0qaf39vfmhn3d0bdjqd805ayfkaj48dkmf5dqd47bpk7dp21b837"; depends=[MASS]; }; signalHsmm = derive2 { name="signalHsmm"; version="1.5"; sha256="1d4v6cbvcbi8pb5zmn58s01h3jb0kv7yr7qvcnx4p2v82knvhik7"; depends=[Rcpp seqinr shiny]; }; @@ -16703,13 +16334,14 @@ in with self; { silicate = derive2 { name="silicate"; version="0.7.0"; sha256="1x8l6wvymx3scwzym9h6b5wgprjinzp6m2cs6r7xn9aqcr39499a"; depends=[crsmeta decido dplyr gibble gridBase magrittr purrr rlang tibble unjoin]; }; sim1000G = derive2 { name="sim1000G"; version="1.40"; sha256="1avq6xfc34izavvp9vb5ccc2b9nc4m7cwr06ygnsmpgwi5nswbb8"; depends=[hapsim MASS readr stringr]; }; sim2Dpredictr = derive2 { name="sim2Dpredictr"; version="0.1.0"; sha256="0q1l75h1dcxnd60lcmf4sny1ywidfmm0yv9ylkb3yc13v469167i"; depends=[car dplyr ggplot2 magrittr MASS matrixcalc Rdpack spam tibble tidyverse]; }; + simDNAmixtures = derive2 { name="simDNAmixtures"; version="1.0.1"; sha256="17865ihl8bv3nqhsqy3dpi82x4q1q5dzff6r3qygdnmh0ymhr7d2"; depends=[dplyr pedtools readr]; }; simEd = derive2 { name="simEd"; version="2.0.0"; sha256="0rsagk77qgxfjjkqrg2kv88cg9z3gnjff7k1558psvbvc50d3cmg"; depends=[rstream shape]; }; simExam = derive2 { name="simExam"; version="1.0.0"; sha256="10p3y67cli5is2gj23cjy8y7zpbnn2jbxmfiq01ls0hc1jind82w"; depends=[Matrix msm]; }; simFrame = derive2 { name="simFrame"; version="0.5.4"; sha256="1a2p4hx80rrrzs4gjscdsy1jbzpahkw0h2nlna4q8p75blgnzwpn"; depends=[lattice Rcpp]; }; simIReff = derive2 { name="simIReff"; version="1.0"; sha256="0yi43splda8chnh4bq5x6chbrl5c0y9sv1k2m31763da0czayall"; depends=[bde extraDistr ks MASS np rvinecopulib truncnorm]; }; simITS = derive2 { name="simITS"; version="0.1.1"; sha256="0b62lvknfqli6ki4w360b1ih9nsm6pinaqskgra6vl2nzsim3sal"; depends=[dplyr rlang]; }; simMP = derive2 { name="simMP"; version="0.17.3"; sha256="1pzg79dd08ds3pfzxnk9h95gaibicv00mnm0jb4i8v5is4gzrdhr"; depends=[Biostrings BSgenome doParallel foreach GenomeInfoDb GenomicRanges IRanges XVector]; }; - simMSM = derive2 { name="simMSM"; version="1.1.41"; sha256="04icijrdc269b4hwbdl3qz2lyxcxx6z63y2wbak1884spn6bzbs8"; depends=[mvna survival]; }; + simMSM = derive2 { name="simMSM"; version="1.1.42"; sha256="0nxs3n64mh1sbnbmqbj7hm8d43z0cja8da9yhsygl60r1jyl98xd"; depends=[mvna survival]; }; simMetric = derive2 { name="simMetric"; version="0.1.0"; sha256="070va0k6inhpvzvg6zakf1w92r0547c4xhlm9vx8k2rqz1snlsd4"; depends=[assertthat dplyr purrr]; }; simPATHy = derive2 { name="simPATHy"; version="0.6"; sha256="0xiqcrdnn7pcbhykkjabfym6hqq9hrnjigav8nshs143s9wflw1q"; depends=[ggm graph gRbase htmlwidgets igraph mvtnorm qpgraph R_utils shiny shinydashboard]; }; simPH = derive2 { name="simPH"; version="1.3.13"; sha256="086060f78f1dmpa6cyhx160blchckplw04gs6997f1hwzswci2l2"; depends=[data_table dplyr ggplot2 gridExtra lazyeval MASS mgcv quadprog stringr survival]; }; @@ -16722,6 +16354,7 @@ in with self; { simctest = derive2 { name="simctest"; version="2.6"; sha256="0igwn82zfx6ajv42gpyx6969aldygldkpdc9ik6601511sscvf2a"; depends=[]; }; simdistr = derive2 { name="simdistr"; version="1.0.1"; sha256="16fsj42zr627i57q1q72l1nhin7g6rxq9hfy487hf1ywd6rvns18"; depends=[]; }; simecol = derive2 { name="simecol"; version="0.8-14"; sha256="0b0zx5wqvrfs4rpn6ngdf0c9d99wf9d0niaps41lslvlnpddvjw8"; depends=[deSolve minqa]; }; + simer = derive2 { name="simer"; version="0.9.0.0"; sha256="1mvdf36xp1iiip6qxvmlgabvp7mm3qnhrispxjzyn79qp28c3wc2"; depends=[BH bigmemory igraph MASS Matrix Rcpp RcppArmadillo RcppProgress rjson rMVP]; }; simest = derive2 { name="simest"; version="0.4"; sha256="1wp08dkbshn5parq69d7iizp4g16qzpdim37kcg09pgsc3aghwaj"; depends=[cobs nnls]; }; simex = derive2 { name="simex"; version="1.8"; sha256="1849wayygyqv0fh1i2qva7ggh2yah2nn0sgbcy9pldxrjq8q9iw0"; depends=[]; }; simexaft = derive2 { name="simexaft"; version="1.0.7.1"; sha256="0n3n2g07pnpcqhbrjf78lbvqvc136g7jxlx6q27vnk96kwizh3f1"; depends=[mvtnorm survival]; }; @@ -16730,7 +16363,7 @@ in with self; { simfit = derive2 { name="simfit"; version="0.1.0"; sha256="0wlkkpxvpxd17y2kgfwjyjlrwj48z27mhss8r7yp4410l0a2llgy"; depends=[ggplot2 magrittr]; }; simglm = derive2 { name="simglm"; version="0.8.9"; sha256="0spvr8bmdqg97y1qklr8c6svgwsdwa5haar4sbsnvpnrq5fb2baw"; depends=[broom dplyr future_apply purrr rlang]; }; simgof = derive2 { name="simgof"; version="1.0.2"; sha256="05d7im59i193f266kqy4lr37dw3v20j9niizhj9w8z1qlfqfqsrk"; depends=[ddst]; }; - simhelpers = derive2 { name="simhelpers"; version="0.1.1"; sha256="0hnqvymmyimh6244r8a8qmmsb799pgj6j6yvgdnhvjmss8ymif9d"; depends=[dplyr furrr future magrittr purrr Rdpack rlang rstudioapi tibble tidyr]; }; + simhelpers = derive2 { name="simhelpers"; version="0.1.2"; sha256="0ykv03nz7133af0yc7a3j67bpqjch4jkp8szlhy68pbwgin5zm1z"; depends=[dplyr furrr magrittr Rdpack rlang rstudioapi tibble tidyr]; }; simlandr = derive2 { name="simlandr"; version="0.2.0"; sha256="009kvq86q78l265xvpqn3nbbf20rnbqflng15zxcb4bg1490x3xb"; depends=[bigmemory digest dplyr forcats gganimate ggplot2 htmlwidgets ks lifecycle magrittr MASS plotly progress purrr rlang scales tibble]; }; simmer = derive2 { name="simmer"; version="4.4.4"; sha256="1rk6c4i6w3z3zhv2yr2lzhcr10araxxcycn556pncqp4f0ycb2l8"; depends=[BH codetools magrittr Rcpp]; }; simmer_bricks = derive2 { name="simmer.bricks"; version="0.2.1"; sha256="1s73mfmpjz91n932kjk50aai5j3p1sjibq73yxrjdhlyhiy4d8lp"; depends=[simmer]; }; @@ -16784,7 +16417,6 @@ in with self; { siqr = derive2 { name="siqr"; version="0.8.1"; sha256="0yyb4abd7lghsb1qrw61zvbll3hs4dsldkvs3syrabwhxady8w43"; depends=[KernSmooth quantreg]; }; sirad = derive2 { name="sirad"; version="2.3-3"; sha256="0vhmk2fmq4797gj6c8803zw1ipmdxfvdfgi2bygzxbn5bqd4da2n"; depends=[raster zoo]; }; siren = derive2 { name="siren"; version="1.0.1"; sha256="03hwrf40wp6jn6y6s3q0hgv4hnndrck2qb94c4jqj6lcwn673h9f"; depends=[EFA_MRFA lavaan psych]; }; - sirt = derive2 { name="sirt"; version="3.11-21"; sha256="06lazl1navs7cpm4ql19y00h4m8yijf2mrjpvr4rsh16b157rssb"; depends=[CDM pbv Rcpp RcppArmadillo TAM]; }; sirus = derive2 { name="sirus"; version="0.3.2"; sha256="1j821vxy81x12yv229k334s8cwjl5fla2wvlhdz01rf688sv0hbs"; depends=[ggplot2 glmnet Matrix Rcpp RcppEigen ROCR]; }; sisVIVE = derive2 { name="sisVIVE"; version="1.4"; sha256="1vh53irxgk8ahw52cdqbbm89dvmzyf54izg4lm8a3v92k5p6nzwz"; depends=[lars]; }; sisal = derive2 { name="sisal"; version="0.48"; sha256="1fh35ndra58dryw222ng7ys3gx1izyk5789k30lyd4n8wqy6sjjd"; depends=[boot digest lattice mgcv R_matlab R_methodsS3]; }; @@ -16795,18 +16427,17 @@ in with self; { siteymlgen = derive2 { name="siteymlgen"; version="1.0.0"; sha256="1176fnf39ars5cdjvy5w2k6b92qv51hy86s71sl8ghr0lwdq9f59"; depends=[data_table dplyr lubridate magrittr purrr rlist rmarkdown stringr yaml ymlthis]; }; sitmo = derive2 { name="sitmo"; version="2.0.2"; sha256="1hm89zi38ldgbskyx1cn7gm87yqy7zrxli8q05a36y1ndvazi3j4"; depends=[Rcpp]; }; sitools = derive2 { name="sitools"; version="1.4"; sha256="0c0qnvsv06g6v7hxad96fkp9j641v8472mbphvaxa60k3xc7ackb"; depends=[]; }; - sitree = derive2 { name="sitree"; version="0.1-12"; sha256="0xhfq9w6rl11bb2l5n09byr2rbrqr9mli2qnnqcpz5dsy5bb17zv"; depends=[data_table ggplot2]; }; + sitree = derive2 { name="sitree"; version="0.1-13"; sha256="0v0qbzdgh1lcg7m6b5vzfwy74hvj1b61c49lq8c4az740sf34sx6"; depends=[data_table ggplot2]; }; sitreeE = derive2 { name="sitreeE"; version="0.0-8"; sha256="0jwxca8y0nn1aqx4c6gikgf31nb4dll543m0akd4jmqx6fc450kd"; depends=[data_table sitree]; }; sivs = derive2 { name="sivs"; version="0.2.5"; sha256="16w1yixb2wfgprnfm408l11nz9j28by7sz82x17rzmjb6p3n1jw5"; depends=[doParallel foreach glmnet pROC varhandle]; }; sizeMat = derive2 { name="sizeMat"; version="1.1.2"; sha256="1vbndadsn80ddrg471vp1qxf0gan38w6dkjk1p2npvfb47wdjj2h"; depends=[MASS matrixStats MCMCpack]; }; sjPlot = derive2 { name="sjPlot"; version="2.8.10"; sha256="1rnwhh271xj8xgvvlpqw9ain56mfz37fvl7f6jq9nzx9jxx95bjd"; depends=[bayestestR datawizard dplyr effectsize ggeffects ggplot2 insight knitr MASS parameters performance purrr rlang scales sjlabelled sjmisc sjstats tidyr]; }; sjSDM = derive2 { name="sjSDM"; version="1.0.1"; sha256="0ifr1pz8mcs91k621hiqvs9ianvblh1c8ml30gvb74yhjw6a9p50"; depends=[abind checkmate cli crayon ggplot2 ggtern mathjaxr Metrics mgcv mvtnorm reticulate rstudioapi Ternary]; }; sjdbc = derive2 { name="sjdbc"; version="1.6.1"; sha256="0cz5qc5lsipd3nlkzj8j03xmpzxp52c3q5av8pr7fm3vsdclawfk"; depends=[rJava]; }; - sjlabelled = derive2 { name="sjlabelled"; version="1.1.8"; sha256="17gskxr43rgbg7syla3b78g2qgksq2kj07iad4139xycqxblxya0"; depends=[insight]; }; + sjlabelled = derive2 { name="sjlabelled"; version="1.2.0"; sha256="1va86q5wddyvqgdpy8d0an2c7v1qbb4hpn0ai6y1v5v1ff87w73k"; depends=[datawizard insight]; }; sjmisc = derive2 { name="sjmisc"; version="2.8.9"; sha256="1gzkq95ckxr0vhrzggflzli9hs7zr8c0yym9zn1wf74yrr0mgc3q"; depends=[dplyr insight magrittr purrr rlang sjlabelled tidyselect]; }; sjstats = derive2 { name="sjstats"; version="0.18.1"; sha256="1cv80yjnyh6qihxf57zivihhia20gibr5f03x8aspy6382wnwlka"; depends=[bayestestR broom dplyr effectsize emmeans insight lme4 magrittr MASS modelr parameters performance purrr rlang sjlabelled sjmisc tidyr]; }; skater = derive2 { name="skater"; version="0.1.1"; sha256="0cylcwxqc75a7fkyn7llwp0c7k35sfsbylxrjn0cpdnxbyf5xcx5"; depends=[corrr dplyr kinship2 magrittr purrr readr rlang tibble tidyr]; }; - skda = derive2 { name="skda"; version="0.1"; sha256="0a6mksr1d0j3pd0kz4jb6yh466gvl4fkrvgvnlmvivpv6b2gqs3q"; depends=[]; }; skedastic = derive2 { name="skedastic"; version="1.0.4"; sha256="07i9sgqc96h9ih8r1n9fvryyw8znpap1bpmvbm62sm3qcj7m856p"; depends=[arrangements bazar boot broom CompQuadForm cubature data_table expm gmp MASS mvtnorm pracma quantreg Rdpack Rmpfr]; }; skeletor = derive2 { name="skeletor"; version="1.0.4"; sha256="1jfbfbkjx8mdwamsrkhvcnyn470in702vgcyw3g2dbgs84gl29q8"; depends=[]; }; skellam = derive2 { name="skellam"; version="0.2.0"; sha256="0r5wbs5h7xc3k2vjxd4axwnxr9cmwm008fcyj1vyixkg8fa680gx"; depends=[]; }; @@ -16818,13 +16449,12 @@ in with self; { skewsamp = derive2 { name="skewsamp"; version="1.0.0"; sha256="1b41zjjnn7vphcrbvrvqx66jfd9fb8v22xmgql6wh26a2y81bman"; depends=[]; }; skewt = derive2 { name="skewt"; version="1.0"; sha256="1jaldnqgjzky2vr290vzpzdwsa5s92l977v6k2yhpzmmw4k4x3l7"; depends=[]; }; skilljaR = derive2 { name="skilljaR"; version="0.0.1"; sha256="1qfb4irslbmidjq358bkhadr71armk4jps78xz5bm0kxbj2nljhq"; depends=[dplyr httr jsonlite magrittr purrr]; }; - skimr = derive2 { name="skimr"; version="2.1.3"; sha256="02q5l1l1a9m602dg55gbb1zd3ymh0gxy6r815dj8cp769i8hqla1"; depends=[cli crayon dplyr knitr magrittr purrr repr rlang stringr tibble tidyr tidyselect vctrs withr]; }; + skimr = derive2 { name="skimr"; version="2.1.4"; sha256="1xfma7h488sjhqz3mj1zz5xlm075arzp85rny24rckvn7nj6avkg"; depends=[cli dplyr knitr magrittr pillar purrr repr rlang stringr tibble tidyr tidyselect vctrs]; }; sklarsomega = derive2 { name="sklarsomega"; version="3.0-1"; sha256="110j27wjj1z30b7y60lm6jdimb0x5yrj18qyb0m6m2fpsczg93w4"; depends=[dfoptim extraDistr hash LaplacesDemon Matrix mcmcse numDeriv spam]; }; skm = derive2 { name="skm"; version="0.1.5.4"; sha256="06g3bdncq2r56d8k3dr87gqnibypbsps0gj4jxkw9q1sq1yaff3v"; depends=[data_table magrittr plyr Rcpp RcppArmadillo RcppParallel]; }; skmeans = derive2 { name="skmeans"; version="0.2-14"; sha256="1kkp9zdwk1k3q50xp8g0jqgg3x1qzgigfkg37bpac7542276vsqq"; depends=[clue cluster slam]; }; sknifedatar = derive2 { name="sknifedatar"; version="0.1.2"; sha256="0zi9anrxg9zkgxlzlfyry5i5zlj3fs8580mp6xckkl096dry9ih0"; depends=[cli dplyr knitr magrittr modeltime parsnip purrr rlang rsample tibble tidyr tune]; }; - skpr = derive2 { name="skpr"; version="1.0.0"; sha256="1p8wwan29jgc4p9pk0x19wwqnvy012bhci6s49za1wzvzxh6w7ia"; depends=[car doParallel doRNG foreach future gt iterators lazyeval lme4 lmerTest magrittr progress promises Rcpp RcppEigen rintrojs scales shiny shinyjs shinythemes survival viridis]; }; - skynet = derive2 { name="skynet"; version="1.4.0"; sha256="1ir8sw99fvdy8zp7ncgdnggr8hv1ph21kvdi9my42vlsh2fqi5ja"; depends=[data_table dplyr geosphere ggplot2 ggrepel httr igraph leaflet maps stringr]; }; + skpr = derive2 { name="skpr"; version="1.1.4"; sha256="10jppgnzvn1bgp65r73qwls8q6c4md9xd5nv484vv5r7l0slvdpy"; depends=[car doParallel doRNG foreach future gt iterators lazyeval lme4 lmerTest magrittr progress promises Rcpp RcppEigen rintrojs scales shiny shinyjs shinythemes survival viridis]; }; skyscapeR = derive2 { name="skyscapeR"; version="1.0.0"; sha256="1x3s003wdmnf0h1k3gl6cvd35g516y7v2yzahr3wxk2np832kjli"; depends=[doParallel foreach httr MESS numDeriv oce plotrix png RColorBrewer rootSolve swephR zoo]; }; slackr = derive2 { name="slackr"; version="3.2.0"; sha256="10klljhkycnyqkzq73gj71c2phdqx9l3lb2jzancc59x21wjqn3b"; depends=[cachem dplyr ggplot2 httr jsonlite magrittr memoise rlang tibble withr]; }; slam = derive2 { name="slam"; version="0.1-50"; sha256="1ggqcf8l1z2hpi7qy4mg0d2ps48bjjb8z1y1xz6fq162cqrbz6bq"; depends=[]; }; @@ -16839,7 +16469,7 @@ in with self; { slgf = derive2 { name="slgf"; version="0.1.0"; sha256="0wjj9mbf33x5isi5h3mdas283aw9x2hi5hyqgqbi941vhwf6v31l"; depends=[numDeriv Rdpack]; }; slickR = derive2 { name="slickR"; version="0.5.0"; sha256="1zxj6ivdhi9wvqcrl0p8clwk8nxqmg1bijqamp0lhq82dpyrdngp"; depends=[base64enc htmltools htmlwidgets lifecycle xml2]; }; slider = derive2 { name="slider"; version="0.2.2"; sha256="1vxk2bc33svwcki2j8zr5jcxswh27i0fqgzjw2a5a1pp9dh3fmd3"; depends=[ellipsis glue rlang vctrs warp]; }; - slideview = derive2 { name="slideview"; version="0.1.0"; sha256="0zq5s6qdxn6ri88pp0wf2kg2k4byrrsfvwh0ai892p4szqbc3w4v"; depends=[htmltools htmlwidgets lattice raster viridisLite]; }; + slideview = derive2 { name="slideview"; version="0.2.0"; sha256="031ahdqswl14sw0nxmhaam37g14cifb83dyp2zjz1mh6qpkzl2gs"; depends=[htmltools htmlwidgets lattice raster viridisLite]; }; slim = derive2 { name="slim"; version="0.1.1"; sha256="0x9bk6w6lmw15s85gw9g8d1wlb57kkvnmx1wsyasn93x9llkjva1"; depends=[data_table MASS]; }; slimrec = derive2 { name="slimrec"; version="0.1.0"; sha256="1qzcvk7z8y11hwmybvppk1gf8di596zxy7qs22fclp6h6y18s377"; depends=[assertthat bigmemory glmnet Matrix pbapply]; }; slippymath = derive2 { name="slippymath"; version="0.3.1"; sha256="0dqnv089mcfxvpsc1px7mblim6m77n59xpcysz75jrvpc5q4lsrg"; depends=[png purrr raster]; }; @@ -16852,8 +16482,8 @@ in with self; { slurmR = derive2 { name="slurmR"; version="0.5-1"; sha256="07c192q3scf5w0jb5zkkadgpggfs9dbxy816lv9llxva7pgqjdmx"; depends=[]; }; sm = derive2 { name="sm"; version="2.2-5.7"; sha256="03z8igsjqr32x407asxvkrbayvm6yhv9xyfs0n8fkmv8zk5a41r6"; depends=[]; }; smaa = derive2 { name="smaa"; version="0.3-0"; sha256="0y7j4q147fdk7fffyinc803mfzzsmcdfx8bp695w3wkq1wwy9kyl"; depends=[]; }; - smacof = derive2 { name="smacof"; version="2.1-3"; sha256="1221k0bkx47j0cpc2f2flhq3f4x7r4mvm4fdv0ba1iaiw10di7h1"; depends=[candisc colorspace doParallel e1071 ellipse foreach Hmisc MASS nnls plotrix polynom weights wordcloud]; }; - smacpod = derive2 { name="smacpod"; version="2.4"; sha256="0kb26gl3qrldpxiar9cadbpvd6858ax4m2cffw3c4h5nn2zj14hk"; depends=[abind pbapply plotrix smerc sp spatstat_core spatstat_geom spatstat_random]; }; + smacof = derive2 { name="smacof"; version="2.1-5"; sha256="1i9a3637m943sw6s0hx2b99kny0sv8niywqi9l12pjxx9flnj0zv"; depends=[candisc colorspace doParallel e1071 ellipse foreach Hmisc MASS nnls plotrix polynom weights wordcloud]; }; + smacpod = derive2 { name="smacpod"; version="2.4.1"; sha256="08khvvmskgdcdkyil6bvk47z347690407wfb4fpczwxhzkjx14f2"; depends=[abind pbapply plotrix smerc sp spatstat_core spatstat_geom spatstat_random]; }; smallarea = derive2 { name="smallarea"; version="0.1"; sha256="0jcv0xbh8v4g6zxxs4yyd0divwzk9d2w7g01r4s65khxvy3av7yx"; depends=[MASS]; }; smam = derive2 { name="smam"; version="0.6.0"; sha256="1vgsx1n9gkkjnv5lrrznpfqvh019qcjki6gy625k3ykqg5zg229v"; depends=[doParallel doSNOW EnvStats foreach Matrix nloptr numDeriv Rcpp RcppGSL RcppParallel]; }; smapr = derive2 { name="smapr"; version="0.2.1"; sha256="1gcq66gs6968c5h303dqd2jyw2rcdwxv642ki1cmpdj6ix665dpr"; depends=[httr rappdirs raster rhdf5 rvest xml2]; }; @@ -16865,14 +16495,14 @@ in with self; { smbinning = derive2 { name="smbinning"; version="0.9"; sha256="1sr0nsqqzxdf402g9qx1ycigbh330idl9n2cyli4x4zxj1nqm3yv"; depends=[Formula gsubfn partykit sqldf]; }; smcfcs = derive2 { name="smcfcs"; version="1.6.1"; sha256="0n94sd2cdf6zsmnph0q5qi50rzaa12lrkj5g74bsbrpxhixw9bba"; depends=[abind checkmate MASS rlang survival VGAM]; }; smco = derive2 { name="smco"; version="0.1"; sha256="1sj3y1x6pc32cwzyhn9gaxs964xh5xl4vw08hsa8kfcxhh2r0s99"; depends=[]; }; - smcure = derive2 { name="smcure"; version="2.0"; sha256="1j7fxnb0sx57a0l929c3haz4f1y829ymlq0cvdh0cia4qp6ydv60"; depends=[survival]; }; + smcure = derive2 { name="smcure"; version="2.1"; sha256="0377dj6wvny2y44phsf7177ivn70a55v316skwf02n03ghqx73k9"; depends=[survival]; }; smd = derive2 { name="smd"; version="0.6.6"; sha256="1nvlka2prqh1hcj4ngpj2c2gmfryziijqwjyfy9fmq78skiq0jij"; depends=[MASS]; }; smdata = derive2 { name="smdata"; version="1.2"; sha256="1p26b46kg4hmhs2fl9h9vchar00llqv58ylx438bjgzz4f229qvr"; depends=[]; }; - smds = derive2 { name="smds"; version="1.0"; sha256="0aqf3wfn6mlsl8a32gaf9qdpyxwsx19g6mma8qzgaysdmk6vhbpd"; depends=[MASS]; }; smerc = derive2 { name="smerc"; version="1.6"; sha256="1jh8fb9zid6wncfcnbmb1kxhagrrwx8nfdxhhwmmpkzr4x052j6w"; depends=[MESS pbapply randtoolbox Rcpp RcppProgress sp]; }; smfishHmrf = derive2 { name="smfishHmrf"; version="0.1"; sha256="1k6mpyp11zv5rc3k98baymr903p2pf424nf9xng20q1li8s8y2ab"; depends=[fs pracma Rdpack]; }; smfsb = derive2 { name="smfsb"; version="1.3"; sha256="1328w7zpwd3nam6ha4bh14g919jjl87v323ijmbp1j71gc64nn2i"; depends=[abind]; }; smicd = derive2 { name="smicd"; version="1.1.2"; sha256="1v80sshsp3qlc1y7yz1pl4s2jk6khdsli3z2v0cjxfsv1izfd02x"; depends=[formula_tools Hmisc ineq laeken lme4 MuMIn mvtnorm truncnorm weights]; }; + smile = derive2 { name="smile"; version="1.0.4.1"; sha256="0781rzkqwpqnl22phxdcf533p55pshfp4v01k8d1bhd5yvr13y7k"; depends=[Matrix mvtnorm numDeriv Rcpp RcppArmadillo sf]; }; smirnov = derive2 { name="smirnov"; version="1.0-1"; sha256="09mpb45wj8rfi6n6822h4c335xp2pl0xsyxgin1bkfw97yjcvrgk"; depends=[]; }; smmR = derive2 { name="smmR"; version="1.0.3"; sha256="0b6w2k5j65jdngc871ch9ragr7qgwbkl4nhk3gqnbpvkr9m4x88f"; depends=[DiscreteWeibull Rcpp RcppArmadillo seqinr]; }; smnet = derive2 { name="smnet"; version="2.1.2"; sha256="17zv02f1g86s55g81anhqrxfgy2biamsw606byxwh9kdc5l4vfv6"; depends=[RSQLite spam SSN]; }; @@ -16883,12 +16513,12 @@ in with self; { smoothAPC = derive2 { name="smoothAPC"; version="0.3"; sha256="11f34qqdm8m0hmy9jf29q439slchvmqgdfrmak7vcdhfnjcylr5r"; depends=[colorspace lmtest quantreg rgl SparseM]; }; smoothHR = derive2 { name="smoothHR"; version="1.0.3"; sha256="0kqj27vsxdiy0fjn0h94lhzw7hjm6qqnzcvhz15iyssl2d2hzxvg"; depends=[survival]; }; smoothROCtime = derive2 { name="smoothROCtime"; version="0.1.0"; sha256="03iihjxb5xdaf74cm9cajqqjli754mdmv5v1y4hla9vv23017ca1"; depends=[ks]; }; - smoothSurv = derive2 { name="smoothSurv"; version="2.3"; sha256="0rxgps184hl49g8gpa7hjvdl2i01qkghmvlv8blwwr9rfk19aq1s"; depends=[survival]; }; + smoothSurv = derive2 { name="smoothSurv"; version="2.4"; sha256="00y4v5c7j9h4ii74jl1gmiqgrgk0r9gj2gwidqxh1jb0vv5bsbvm"; depends=[survival]; }; smoothedLasso = derive2 { name="smoothedLasso"; version="1.6"; sha256="0007i40a12jgavgd95fbpiil1s331qd05ww6v19l49lbnlk3ldxg"; depends=[Matrix Rdpack]; }; smoother = derive2 { name="smoother"; version="1.1"; sha256="0nqr1bvlr5bnasqg74zmknjjl4x28kla9h5cxpga3kq5z215pdci"; depends=[TTR]; }; smoothic = derive2 { name="smoothic"; version="0.1.0"; sha256="11bi3xyw1ia1p8hqfz4rcp1qxz0lkpwl1yc8m12819mgsliswgn8"; depends=[]; }; smoothie = derive2 { name="smoothie"; version="1.0-3"; sha256="1ari4av4vsydaxg56vsfifc50kxsqy8xlxl7by32capc6pcjwvq8"; depends=[]; }; - smoothmest = derive2 { name="smoothmest"; version="0.1-2"; sha256="14cri1b6ha8w4h8m26b3d7qip211wfv1sywgdxw3a6vqgc65hmk5"; depends=[MASS]; }; + smoothmest = derive2 { name="smoothmest"; version="0.1-3"; sha256="1m8kiwv9nl3c7xggwspa9pridmpgsq3s1ivwrgsv2aaxddwg1wis"; depends=[MASS]; }; smoothr = derive2 { name="smoothr"; version="0.2.2"; sha256="1z1ha67b4fw6mkmvs2g80mc1id215rkzvz7bpzk1jdp6fibqpr2b"; depends=[raster rgeos sf units]; }; smoothtail = derive2 { name="smoothtail"; version="2.0.5"; sha256="1sqkwniz9m03k23nba9ndmdm0g03mdshzm8risr6wz98jcqjilrk"; depends=[logcondens]; }; smoots = derive2 { name="smoots"; version="1.1.3"; sha256="09a3f8prplzl7bsmfxbgni2bx4z3xsmx9sdr7jzmx3janlhlf6c5"; depends=[future future_apply progress progressr Rcpp RcppArmadillo]; }; @@ -16897,7 +16527,7 @@ in with self; { smpic = derive2 { name="smpic"; version="0.1.0"; sha256="0ff2146gjcrc6nvrbf4779jh076abhb843zzlk2zvqir13qfap61"; depends=[ggplot2 imager stringr]; }; sms = derive2 { name="sms"; version="2.3.1"; sha256="0vr5jy8bxbczaqr9kg0fnanxhv9nj51yzgacrb63k33cs85p981m"; depends=[doParallel foreach iterators]; }; smss = derive2 { name="smss"; version="1.0-2"; sha256="04lgfdcvnzpnpplyl62fy7slyiy8wkqpjjrzmclgqis3c9zkkncp"; depends=[]; }; - smurf = derive2 { name="smurf"; version="1.1.2"; sha256="00q54pg42anilhcshhjvv277mkszbpzpkf1g7srs7cjd5skjvsaf"; depends=[catdata glmnet MASS Matrix mgcv RColorBrewer Rcpp RcppArmadillo speedglm]; }; + smurf = derive2 { name="smurf"; version="1.1.3"; sha256="0n99dzsb17r0a6d8nkijfg6rdvvc2g4pard2dnmyjq0p69j3f3gb"; depends=[catdata glmnet MASS Matrix mgcv RColorBrewer Rcpp RcppArmadillo speedglm]; }; smvgraph = derive2 { name="smvgraph"; version="0.1.2"; sha256="06pvnrhd3q913nxhk1icj11xkd1is3qi31b0kv6zbc0qkixn1ym7"; depends=[DescTools fmsb MASS shiny shinydashboard sortable]; }; sn = derive2 { name="sn"; version="2.0.2"; sha256="140p1pl5sq0laxhcm16kbqm986hlhqj90gj3jccga491gh14jywm"; depends=[mnormt numDeriv quantreg]; }; sna = derive2 { name="sna"; version="2.6"; sha256="0ai0v4538d30m4wks5s3lch1yfmx1ml0nnrz7ihs097lv586a09s"; depends=[network statnet_common]; }; @@ -16916,11 +16546,8 @@ in with self; { snowboot = derive2 { name="snowboot"; version="1.0.2"; sha256="0jj3p0g4rwml8vmlwj10rfisxfjlipcrpvq5z134z4j35jp6ggv3"; depends=[igraph Rcpp Rdpack]; }; snowfall = derive2 { name="snowfall"; version="1.84-6.1"; sha256="13941rlw1jsdjsndp1plzj1cq5aqravizkrqn6l25r9im7rnsi2w"; depends=[snow]; }; snowflakes = derive2 { name="snowflakes"; version="1.0.0"; sha256="0adna9jfs0wv4dhyjczxhq7c0ldjfai07p1q9119avxyilv9x0vi"; depends=[]; }; - snp_plotter = derive2 { name="snp.plotter"; version="0.5.1"; sha256="16apsqvkah5l0d5qcwp3lq2jspkb6n62wzr0wskmj84jblx483vv"; depends=[genetics]; }; snpEnrichment = derive2 { name="snpEnrichment"; version="1.7.0"; sha256="1lja1n26nr8lgbca2kraryv933jwa2w3h41appzylflf0w3liz9y"; depends=[ggplot2 snpStats]; }; snpReady = derive2 { name="snpReady"; version="0.9.6"; sha256="1r96j8zh84dn7qh3zgl0p0v3a80hx2wd3c4jgjlr43hzl7yglpqr"; depends=[impute Matrix matrixcalc rgl stringr]; }; - snpStatsWriter = derive2 { name="snpStatsWriter"; version="1.5-6"; sha256="04qhng888yih8gc7yd6rrxvvqf98x3c2xxz22gkwqx59waqd4jlq"; depends=[colorspace snpStats]; }; - snpar = derive2 { name="snpar"; version="1.0"; sha256="0c9myg748jm7khqs8yhg2glxgar1wcf6gyg0xwbmw0qc41myzfnq"; depends=[]; }; snplist = derive2 { name="snplist"; version="0.18.2"; sha256="1sa2s3br4agx920jpr250iih61p99v500nh0c1w99w0846g9908c"; depends=[biomaRt DBI R_utils Rcpp RSQLite]; }; snpsettest = derive2 { name="snpsettest"; version="0.1.1"; sha256="0vfm09bff7l7z36lzwp0ndnlb230f0kg6dlbjlpk028xd1iy4if1"; depends=[data_table gaston Rcpp RcppArmadillo]; }; sns = derive2 { name="sns"; version="1.1.2"; sha256="132zd57xb2y0nshw4lakf49r2mvvkv7j32f7l7hqrh91mw7wyqpr"; depends=[coda mvtnorm numDeriv]; }; @@ -16930,7 +16557,7 @@ in with self; { social = derive2 { name="social"; version="1.0"; sha256="0ny81bhj80rlwwa6cgbkdz2rxz6bp0f3nvjr1sqxr4s8l8rnf4ic"; depends=[Rcpp]; }; socialh = derive2 { name="socialh"; version="0.1.0"; sha256="03ms1plsrs7lhxh4fb2kwrhayly4f53q61czzycjmbfp83fg1xmj"; depends=[data_table dplyr magrittr]; }; socialmixr = derive2 { name="socialmixr"; version="0.1.8"; sha256="0zhinhjv1ablhdyz41a1ii1s3mzqg8f2ns7xcjnlwa9fx364x5a2"; depends=[countrycode curl data_table httr jsonlite lubridate oai stringr wpp2015 XML]; }; - socialranking = derive2 { name="socialranking"; version="0.1.0"; sha256="15s7b41z2gd54wp2y5gcfmrrvzjwdddnwhfd72qxhxnjgwnq62v3"; depends=[mathjaxr Rdpack relations rlang sets]; }; + socialranking = derive2 { name="socialranking"; version="0.1.1"; sha256="1adhly6h4jkzq1b79p3p80vs825rsmwsiwi44kicc3xmsc2ap7jb"; depends=[mathjaxr Rdpack relations rlang sets]; }; socialrisk = derive2 { name="socialrisk"; version="0.5.0"; sha256="049ambqpq50c20x1z0rjzi77i9n3mq5rbhsvfkwflq61i9j8mai9"; depends=[devtools dplyr magrittr rlang stringr tidyr tidyselect tidyverse]; }; sociome = derive2 { name="sociome"; version="2.1.0"; sha256="0dh20mx3jbyy2bkrdz1w0sihdfhpfvc5p0i0x9q0azcpln51rv5k"; depends=[censusapi dplyr magrittr mice psych purrr rlang stringr tidycensus tidyr]; }; socviz = derive2 { name="socviz"; version="1.2"; sha256="1294xwy26vshmaiw3pkx3f90j8g6fv64gygv88b7lnz6fhai1nq5"; depends=[dplyr fs magrittr rlang tibble]; }; @@ -16939,10 +16566,11 @@ in with self; { sofa = derive2 { name="sofa"; version="0.4.0"; sha256="1w78f8pnx4vh6znpwwcy9k4j795zji4bv88mi6ihdv09ar7if7yv"; depends=[crul jsonlite mime R6]; }; softImpute = derive2 { name="softImpute"; version="1.4-1"; sha256="1v2a4d688ij5zcvkzpra9yx40xckdfnllnfnyq2450zf3n1kjk7a"; depends=[Matrix]; }; softclassval = derive2 { name="softclassval"; version="1.0-20160527"; sha256="1f5qj5sajy3dg0mgss6f9w6v5a2prcypld9jcv457bd4n4a409kr"; depends=[arrayhelpers svUnit]; }; - soilDB = derive2 { name="soilDB"; version="2.6.14"; sha256="1pgz6vwap5p1wasyqx8k93pwrmgg8n66h4rz6asdfk172fxs0j62"; depends=[aqp curl data_table DBI raster sp xml2]; }; + soilDB = derive2 { name="soilDB"; version="2.6.15"; sha256="14ssk47ryr8vs01a2y1nn71nh6qs256jg00jb32ygcmk5ibm86x2"; depends=[aqp curl data_table DBI raster sp xml2]; }; soilassessment = derive2 { name="soilassessment"; version="0.2.3"; sha256="0fcjw6zl6cvk94hyhqqra6xpnrh8s7wr9va4yknlv5rf0km2vgd2"; depends=[arm caret Cubist deSolve e1071 FuzzyAHP googledrive Hmisc kernlab nnet png qrnn quantregForest randomForest ranger raster rgdal rpart soiltexture sp]; }; soilhypfit = derive2 { name="soilhypfit"; version="0.1-5"; sha256="07hk7p2gr8an1r295dyj1hpp23103x9qjpscrhlz917p5nr9ix4d"; depends=[mgcv nloptr quadprog Rmpfr snowfall SoilHyP]; }; soilphysics = derive2 { name="soilphysics"; version="4.1"; sha256="1kq92vq45knfag49yvphpcjwp29g2hp0xayhdq8lr20sis7h1y72"; depends=[boot fields MASS shiny shinydashboard]; }; + soiltestcorr = derive2 { name="soiltestcorr"; version="2.1.1"; sha256="1yp3l6fbhlzm84mmavz107v8d28207pr81qbjdz6xv32amlc7xps"; depends=[AICcmodavg data_table dplyr ggplot2 ggpp minpack_lm modelr nlstools purrr rlang tidyr]; }; soiltexture = derive2 { name="soiltexture"; version="1.5.1"; sha256="1l9npvk910488qzd45ibc7ss557hnkb78lx1p6fs3nhl8sacgyxh"; depends=[MASS sp]; }; soilwater = derive2 { name="soilwater"; version="1.0.5"; sha256="11gal7hj73j82qx65krmzpmf0gpm41ph8hw70df46dbf4w23vvjn"; depends=[]; }; sokoban = derive2 { name="sokoban"; version="0.1.0"; sha256="07r2zv9rynvw06fpncrz3rsmkdy6z2pcvmm559bhs428kmnq2xib"; depends=[]; }; @@ -16952,14 +16580,13 @@ in with self; { solitude = derive2 { name="solitude"; version="1.1.3"; sha256="1cqbcm72fq13lp0lazfngdylcasck1ffrj16ggxlryzps1181rhy"; depends=[data_table future_apply igraph lgr R6 ranger]; }; solrad = derive2 { name="solrad"; version="1.0.0"; sha256="13ybllvmig1yqsy4md4kazs83hxb9lrlwy64yw1wwr1w6sxpbnp6"; depends=[]; }; solrium = derive2 { name="solrium"; version="1.2.0"; sha256="16x4gjk0x6m9yjq9sk3kwbw8qm7w16vmbnfy5xa9zikw96cl3iky"; depends=[crul dplyr jsonlite plyr R6 tibble xml2]; }; - solvebio = derive2 { name="solvebio"; version="2.12.1"; sha256="0dl0sq5jx60qdhwbrzmcdvaznmxc3n2gkvg0hbcp21kl9wk6qplk"; depends=[dplyr httr jsonlite mime]; }; + solvebio = derive2 { name="solvebio"; version="2.13.0"; sha256="15vfv6gh8fbzraijn6iy9dd2ck5sfcq1sc3icb322pbbkkvfnwch"; depends=[httr jsonlite mime]; }; som = derive2 { name="som"; version="0.3-5.1"; sha256="1fbza1jxvwrkf5x3inkj36vshhkn7mz0ajqlxalbfmk6ngjw1x56"; depends=[]; }; som_nn = derive2 { name="som.nn"; version="1.1.0"; sha256="0mw2c2lqvdq9bhndpjyawjy43l4x7clcsx2350j45g7fnchhy602"; depends=[class hexbin kohonen som]; }; - soma = derive2 { name="soma"; version="1.1.1"; sha256="1mc1yr9sq9h2z60v40aqmil0xswj5hgxfdh4racq297qw3a97my4"; depends=[reportr]; }; - someKfwer = derive2 { name="someKfwer"; version="1.2"; sha256="0widny5l04ja91fy16x4giwrabwqhx0fs3yl48pv9xh4zj6sx563"; depends=[]; }; + soma = derive2 { name="soma"; version="1.2.0"; sha256="05hm6yqh1d10kbgvy5j0cj2lvcnib4p9lmjcl32zxy1hazpagplq"; depends=[reportr]; }; someMTP = derive2 { name="someMTP"; version="1.4.1.1"; sha256="197ajnnp92qh807a55z0i9z8nw0vmf5vvr216nxjwa2l9kw8c84k"; depends=[]; }; somebm = derive2 { name="somebm"; version="0.1"; sha256="1iwwc94k6znh4d3bbjnvwp4chc4wg0iy4v2f99cs4jasrsimb4p8"; depends=[]; }; - sommer = derive2 { name="sommer"; version="4.1.5"; sha256="12fqsxlrdmp4nkhq56bljgsr2jarvvg13ff8k6780zfraiw250gw"; depends=[crayon lattice MASS Matrix Rcpp RcppArmadillo RcppProgress]; }; + sommer = derive2 { name="sommer"; version="4.1.6"; sha256="095h5pmbvclg6q7abjrpsbwvnjqg8r06y24chqijp19m45pdkzp8"; depends=[crayon lattice MASS Matrix Rcpp RcppArmadillo RcppProgress]; }; somplot = derive2 { name="somplot"; version="1.6.4"; sha256="06c8p2lqz3yxmxdl7ji8a3czvxnsbl7bwyiig76pkwc3a5qqfbb9"; depends=[hexbin]; }; sonar = derive2 { name="sonar"; version="1.0.2"; sha256="1f0f5iqi3y9vnxyym14nm8dqxw0vcpnxmvvkx4sm612i4fclg1f9"; depends=[]; }; sonicLength = derive2 { name="sonicLength"; version="1.4.7"; sha256="1wvdcjk641kcmflda0mibqr519qbqgb26mgwibjhm6pzgvwpy2dg"; depends=[]; }; @@ -16980,15 +16607,14 @@ in with self; { soundcorrs = derive2 { name="soundcorrs"; version="0.4.0"; sha256="1azvsv3bghlab8q24wbb6xwd5a4cydx1cagvhk8h0h5ib9957zab"; depends=[]; }; soundecology = derive2 { name="soundecology"; version="1.3.3"; sha256="16h6gbdlyav7wbfisdv1f2zsqhr45liidgj7qqk8giwjxgan8q97"; depends=[ineq oce pracma seewave tuneR vegan]; }; soundgen = derive2 { name="soundgen"; version="2.5.1"; sha256="1wzqlc1gnknpyixy0dv6nzgghqc1i2xd2bd688pfmfnqgmr2cm3r"; depends=[doParallel dtw foreach mvtnorm phonTools reshape2 seewave shiny shinyBS shinyjs signal tuneR zoo]; }; - sourceR = derive2 { name="sourceR"; version="1.1.0"; sha256="09mikl6rkigx2bdnwqsgxwksz40lspq27hsrhlnfyz5yhs31ssda"; depends=[assertthat cluster dplyr gplots gtools R6 Rcpp reshape2 SPIn tensorA]; }; sourcetools = derive2 { name="sourcetools"; version="0.1.7"; sha256="1jnjir0q2dj724f1mjm6p5h77yzyx6xcqy9r2g7gmcxkxw349627"; depends=[]; }; sovereign = derive2 { name="sovereign"; version="1.2.1"; sha256="1v5cchwia8v9h4fpb506v6nikp5k042axmryjmqrgimaly8dk9nv"; depends=[broom dplyr furrr future ggplot2 gridExtra lmtest lubridate magrittr mclust purrr randomForest sandwich stringr strucchange tidyr xts zoo]; }; - sp = derive2 { name="sp"; version="1.4-6"; sha256="09m2ddbrbs2aqnq5si42ipa0g1vbd0pxg4zbcx59is2047pv7sws"; depends=[lattice]; }; - sp23design = derive2 { name="sp23design"; version="0.9"; sha256="1ihvcld19cxflq2h93m9k9yaidhwixvbn46fqqc1p3wxzplmh8bs"; depends=[mvtnorm survival]; }; + sp = derive2 { name="sp"; version="1.4-7"; sha256="1bdi06n5zkjnnyh0rallf04s0vlcx9rg9p5q7s6vfqvkf19nk501"; depends=[lattice]; }; + sp23design = derive2 { name="sp23design"; version="0.9-1"; sha256="1ivsds210rpxj52labc9mf2ncm3vji983w0kj757jl1b308ql30s"; depends=[mvtnorm survival]; }; spAddins = derive2 { name="spAddins"; version="0.2.0"; sha256="19wbcghcf0f9qvqy92jhsdcpmd9b4lkhxndvr71cyhzga539lh1n"; depends=[magrittr purrr rstudioapi stringr]; }; spBFA = derive2 { name="spBFA"; version="1.1"; sha256="1jx1w9ipf8q08vx1w80s4h7nvgl2xqwcj7afci3j78psc6bigazi"; depends=[msm mvtnorm pgdraw Rcpp RcppArmadillo]; }; spBayes = derive2 { name="spBayes"; version="0.4-5"; sha256="1qjh7y241v9z5al9nwdsbdqr15cj1prsrppwvbv4m5h285npvnji"; depends=[coda Formula magic Matrix sp]; }; - spBayesSurv = derive2 { name="spBayesSurv"; version="1.1.5"; sha256="175n7va1rlnwhjscfj5zvs93b0cx4gmn299pa9cbax71xxjx6l2s"; depends=[coda fields MASS Rcpp RcppArmadillo survival]; }; + spBayesSurv = derive2 { name="spBayesSurv"; version="1.1.6"; sha256="1i5b0k1h2fq44n1hpb4cs5j2rz0s1x94d36yglvd24i55mjjzfk4"; depends=[coda fields MASS Rcpp RcppArmadillo survival]; }; spCP = derive2 { name="spCP"; version="1.2"; sha256="0y00k96p96jgp84wbdhqfwsq2fg8c68gc5310rnzpiv3clws27fb"; depends=[msm mvtnorm Rcpp RcppArmadillo]; }; spData = derive2 { name="spData"; version="2.0.1"; sha256="1z4hp5ivwzyvl8mkp98j2ng1cl1xksqbjxv85vdlqfqjwpia6df6"; depends=[raster sp]; }; spDates = derive2 { name="spDates"; version="1.0"; sha256="0bf9bwi26h26ms0lczk1dld3cwgnx49y6g56sqwrkagn7w6blsrn"; depends=[data_table dplyr gdistance ggplot2 gstat magrittr raster rcarbon rlang smatr sp viridisLite]; }; @@ -16997,15 +16623,14 @@ in with self; { spGARCH = derive2 { name="spGARCH"; version="0.2.2"; sha256="1wrmk2ybgysvibfy8vvp7pyqda5apqp0jxjfp3hlb416fza52966"; depends=[Matrix nleqslv Rcpp RcppEigen Rsolnp spdep truncnorm]; }; spMC = derive2 { name="spMC"; version="0.3.11"; sha256="06lfc4hk5kn1f1fak0ckpnad0c5b0yxb20cnm0j0hyxpv0qbxhj1"; depends=[]; }; spMaps = derive2 { name="spMaps"; version="0.4.0"; sha256="0n9693aam7gsclfhijq7cy61l0w4mm5vf3rjaz5w0jrz77lrkprh"; depends=[raster rgeos sp]; }; - spNNGP = derive2 { name="spNNGP"; version="0.1.7"; sha256="05pvjfckwindvaq96b4kmyavfkk93988xcizlqmkp9f3vqvxrr69"; depends=[coda Formula RANN]; }; - spOccupancy = derive2 { name="spOccupancy"; version="0.3.0"; sha256="1lk1ipawlxxb4hm4r6zjnzjsdx6v1zhlqk4j77abxsb561517g9b"; depends=[abind coda doParallel foreach lme4 RANN spBayes]; }; + spNetwork = derive2 { name="spNetwork"; version="0.4.3.2"; sha256="1srf7s22izqhh09ri0vsnb39mc8isjxcbik71iwxilykds6bh34x"; depends=[abind BH cubature data_table dbscan dplyr future_apply ggplot2 igraph progressr Rcpp RcppArmadillo RcppProgress Rdpack sf spdep]; }; + spOccupancy = derive2 { name="spOccupancy"; version="0.3.1"; sha256="0ws2qrqczn1h0bbrddxl6kknfmr8aszsfg9yl3fipynl7wlqg43y"; depends=[abind coda doParallel foreach lme4 RANN spBayes]; }; spRingsteen = derive2 { name="spRingsteen"; version="0.0.1"; sha256="0dhrwnns06jqzqbc5mc7bjgs98xkcq591nm6scayxm34mqs3k47m"; depends=[]; }; spTDyn = derive2 { name="spTDyn"; version="2.0.1"; sha256="1wprn2adw4l5pkwkfzdpcr07jxgycx9kaf8w8mfv27nka5hacgqx"; depends=[coda sp spacetime spTimer]; }; spThin = derive2 { name="spThin"; version="0.2.0"; sha256="0j10j1cbbwp3baqm3b59rxlnd643mkx1mirlxpnr1ad2g7xpm69f"; depends=[fields knitr spam]; }; spTimer = derive2 { name="spTimer"; version="3.3.1"; sha256="0lf39n32ifsmbcf35h0g60xniw72mlrzvzax3k6kz5c5k1wszlba"; depends=[coda extraDistr sp spacetime]; }; - spaMM = derive2 { name="spaMM"; version="3.11.3"; sha256="1f3w2rixv6fflbinnjhla48kcggqxq93ljrn14kwzs27bfq08d25"; depends=[boot crayon geometry gmp MASS Matrix minqa nlme nloptr pbapply proxy Rcpp RcppEigen ROI]; }; + spaMM = derive2 { name="spaMM"; version="3.11.14"; sha256="10p97ry3igpg1ndfx9rflvyq2n8179r7jqldr34w7g5q0q7qzamr"; depends=[boot crayon geometry gmp MASS Matrix minqa nlme nloptr pbapply proxy Rcpp RcppEigen ROI]; }; spaa = derive2 { name="spaa"; version="0.2.2"; sha256="163iipz1knxx1lzby9a3n1f014yqkf25z1wpwwy4gbx7sia499d5"; depends=[]; }; - space = derive2 { name="space"; version="0.1-1.1"; sha256="09dpksbda4lg5hax47a9h9shjmggza6583slvdj0fldblykpyxck"; depends=[]; }; spaceNet = derive2 { name="spaceNet"; version="1.2"; sha256="1s2672icxs0qvdhl52xhllgvh1i9mjfrn5j3icyw6h61ljbnhy11"; depends=[MASS mclust permute RcppTN Rfast sna vegan]; }; spacefillr = derive2 { name="spacefillr"; version="0.3.0"; sha256="0c4yasc1zizjmhd2ciyz86lg76fsrxvl19yjkb2fmkda9rmnc0bf"; depends=[Rcpp]; }; spacejamr = derive2 { name="spacejamr"; version="0.2.1"; sha256="05rprsgnihhz3xhh7p9mkn4scpi318kvrkkrrw9j645d6bwfms5l"; depends=[crsuggest dplyr ggplot2 ggraph ggthemes igraph magrittr sf spatstat_geom spatstat_random]; }; @@ -17015,13 +16640,12 @@ in with self; { spacey = derive2 { name="spacey"; version="0.1.1"; sha256="1p8kx3d08q9kz1wb286m3d8ckwkhfm5n42m65m4w5gz5kpfx0xfz"; depends=[httr jsonlite magrittr png raster rayshader rgdal]; }; spacyr = derive2 { name="spacyr"; version="1.2.1"; sha256="1b2ccgwsiqkvp7w37x8k7699c676q16vfrybkrfvyczyhki4s6nw"; depends=[data_table reticulate]; }; spaero = derive2 { name="spaero"; version="0.6.0"; sha256="0xigwi6w21y2fwicml0s2gylwnwp2qvrqskr0v8rd3bn01hg9ja3"; depends=[]; }; - spagmix = derive2 { name="spagmix"; version="0.3-5"; sha256="0rjdsg1pl8vpbcyyiqaqgc10h3i0q8xqivpawfaw43ybz15csnzl"; depends=[abind mvtnorm RandomFields sparr spatstat spatstat_core spatstat_geom spatstat_linnet spatstat_random]; }; spam = derive2 { name="spam"; version="2.8-0"; sha256="1ann2a2ifr3z983fcg1c0pkgmbxz6a0ym5q1dmq1r382bd1pg0fr"; depends=[dotCall64]; }; spam64 = derive2 { name="spam64"; version="2.8-0"; sha256="105h8j1ps2g79csbhwfchfdfxhqbbs793pxk3hqln57p6nap74i6"; depends=[]; }; spamtree = derive2 { name="spamtree"; version="0.2.2"; sha256="1z1dyv6cvcdilqyfpzgl3zr0jmzjn2sznrvypvxx7c8i6qfq8nd0"; depends=[dplyr FNN magrittr Rcpp RcppArmadillo rlang tibble]; }; spanel = derive2 { name="spanel"; version="0.1"; sha256="1riyvvfij277mclgik41gyi01qv0k466wyk2wbqqhlvrlj79yzsc"; depends=[]; }; spanish = derive2 { name="spanish"; version="0.4.2"; sha256="15drc11lh0qxpww50p0smi8qxfbln82bx0yd74jqf71irhk5jxyp"; depends=[magrittr xml2]; }; - spant = derive2 { name="spant"; version="1.20.0"; sha256="0bsq3fnhsl9cpvh0z9jv2f3fg2336av12ngc2wisn74bw5r32kwy"; depends=[abind expm fields irlba jsonlite magrittr minpack_lm mmand nloptr numDeriv plyr pracma ptw RNifti RNiftyReg signal smoother stringr]; }; + spant = derive2 { name="spant"; version="1.21.0"; sha256="1vzcvg2rz7n9ypyb3ri29a8a2h43dvi3bbi278214qbsacr0akng"; depends=[abind expm fields irlba jsonlite magrittr minpack_lm mmand nloptr numDeriv plyr pracma ptw RNifti RNiftyReg signal smoother stringr]; }; sparcl = derive2 { name="sparcl"; version="1.0.4"; sha256="138krflvfdlx4hlh90mswds51i8aw2vv00gm5lgkfsvxj4w324jg"; depends=[]; }; spark_sas7bdat = derive2 { name="spark.sas7bdat"; version="1.4"; sha256="1s1hd6hvjxnfb3w10v93pggijmm2h4rcsf7ckl34j2sw9bvv7zka"; depends=[sparklyr]; }; sparkavro = derive2 { name="sparkavro"; version="0.3.0"; sha256="0g6ac9msfbx8f8j8rj0hvlxjsn317zyam207q7i8kf0hshs1r58f"; depends=[DBI dplyr sparklyr]; }; @@ -17048,7 +16672,6 @@ in with self; { sparseLTSEigen = derive2 { name="sparseLTSEigen"; version="0.2.0.1"; sha256="08xhpm9hp9x9rmiys4fvh9y4z2xsdkzckzw3lq0vlzvjcaynvidq"; depends=[Rcpp RcppEigen robustHD]; }; sparseMVN = derive2 { name="sparseMVN"; version="0.2.2"; sha256="1vd97w4mrc6s9d95a43cpz90adhn2015as93j55hm5phpgj24v75"; depends=[Matrix]; }; sparseMatEst = derive2 { name="sparseMatEst"; version="1.0.0"; sha256="06y061zl6id7cfw3cqzvwykzlijmala8hj61i04mgc491ngybimv"; depends=[glasso]; }; - sparseSEM = derive2 { name="sparseSEM"; version="2.5"; sha256="0ig8apsi94kvbcq3i8nzmywbdizlss7c6r9bppcyl9lxgikc3cds"; depends=[]; }; sparseSVM = derive2 { name="sparseSVM"; version="1.1-6"; sha256="0b0qiikjyyh9qfd4jl69zqnlp7adxq63mwsxvgwvyc0pv5ccg8i0"; depends=[]; }; sparsebnUtils = derive2 { name="sparsebnUtils"; version="0.0.8"; sha256="1x1phd33r3ci72sbm0pkmigwbi4x59pdz8n5919119mkxdf740vs"; depends=[Matrix nnet]; }; sparsediscrim = derive2 { name="sparsediscrim"; version="0.3.0"; sha256="1fzvki3az1y5bz6d7lygv3hjbzn17gq8g2s7xqmldlpq1v4dhjar"; depends=[bdsmatrix corpcor dplyr ggplot2 mvtnorm rlang]; }; @@ -17063,7 +16686,7 @@ in with self; { sparsevar = derive2 { name="sparsevar"; version="0.1.0"; sha256="1kcy6bm04mccky529nryy5l001bv71hx304ysiabl4myakw0rwy7"; depends=[corpcor doParallel ggplot2 glmnet Matrix mvtnorm ncvreg picasso reshape2]; }; sparsevb = derive2 { name="sparsevb"; version="0.1.0"; sha256="1cigq8hwymrrkiy3iyrxsjjbj228ahrd7mq9lqar4jlb925jzqx4"; depends=[glmnet Rcpp RcppArmadillo RcppEnsmallen selectiveInference]; }; sparsio = derive2 { name="sparsio"; version="1.0.1"; sha256="181kzs9x3h497c7shfalbzrjz05bkj7mmjh9nyphxyi2jjrr6y1q"; depends=[Matrix Rcpp]; }; - sparta = derive2 { name="sparta"; version="0.8.3.1"; sha256="1rgg9x2p5qwah1ndfsrxd736igjlj2p2k8fc413zpiix0s66nr16"; depends=[Rcpp RcppArmadillo]; }; + sparta = derive2 { name="sparta"; version="0.8.4"; sha256="109i8yhv8snhpccrhxy1k8xcy9jj8m3li2d7vaylvxbrlnc26d89"; depends=[Rcpp RcppArmadillo]; }; spass = derive2 { name="spass"; version="1.3"; sha256="1c148z0i3d185hnf54xmgppjrblv3b2s3sm0lmj78gvav04mj5s4"; depends=[geepack MASS multcomp mvtnorm Rcpp]; }; spatPomp = derive2 { name="spatPomp"; version="0.29.0.0"; sha256="1d3k5m2rlpn1hgpjxb9qx4hz3bl96ch8hmc06lj9jd6awdspdvf5"; depends=[abind dplyr foreach magrittr pomp rlang stringr tidyr]; }; spatgraphs = derive2 { name="spatgraphs"; version="3.2-2"; sha256="09bbcqgmbg6a65mnxivr4pghsanj22x1j0l4hq8bzpwgbas7byhy"; depends=[Matrix Rcpp]; }; @@ -17074,9 +16697,8 @@ in with self; { spatialRF = derive2 { name="spatialRF"; version="1.1.3"; sha256="1ganbsp7krazl90mdlq23g227ixmxpk4yzxl47rayd431vg6fys1"; depends=[doParallel dplyr foreach ggplot2 huxtable magrittr patchwork ranger rlang tibble tidyr tidyselect viridis]; }; spatialTIME = derive2 { name="spatialTIME"; version="1.2.0"; sha256="0pmpk2kfh53gfzw33ncr1pjzyh7zprkdwgxqgajvd8y2wb90a462"; depends=[crayon dplyr furrr future ggplot2 ggpubr magrittr pheatmap plyr purrr RColorBrewer rlang rlist scales spatstat_core spatstat_geom tidyr tidyselect viridis]; }; spatialfusion = derive2 { name="spatialfusion"; version="0.6-5"; sha256="0hbnnd40z9f2cmgc339v5gq5bqildzn79p24l8rbfbh676a5jfmq"; depends=[fields Rcpp rstan sp]; }; - spatialnbda = derive2 { name="spatialnbda"; version="1.0"; sha256="14mx5jybymasyia752f3vnr5vmswcavbz8bpqr69vlxphw27qkwk"; depends=[mvtnorm SocialNetworks]; }; spatialprobit = derive2 { name="spatialprobit"; version="1.0"; sha256="1g65c081xmhfp45lidn57xwryk4pmzzixs3b2qzixzg4knks74dy"; depends=[Matrix mvtnorm spatialreg spdep tmvtnorm]; }; - spatialreg = derive2 { name="spatialreg"; version="1.2-1"; sha256="10d0gd21s84r7d5i1h62zavb40ws9c6vikrk8qjii25a66rvch2c"; depends=[boot coda expm gmodels LearnBayes MASS Matrix nlme sf spData spdep]; }; + spatialreg = derive2 { name="spatialreg"; version="1.2-3"; sha256="08nfiwk7s0m78mz9ppnwcblr01yg56gyz6dysk0xax9r0igydq09"; depends=[boot coda expm gmodels LearnBayes MASS Matrix nlme sf spData spdep]; }; spatialrisk = derive2 { name="spatialrisk"; version="0.7.0"; sha256="0mqi8jrz1msk2aaza67vfp9s21f372mhvbivwxy56fxrl7vp975v"; depends=[classInt colourvalues data_table dplyr fs GenSA geohashTools ggplot2 leafem leafgl leaflet lubridate Rcpp RcppProgress sf tmap units viridis]; }; spatialsample = derive2 { name="spatialsample"; version="0.1.0"; sha256="0w57pl09pamx8mmrwyj2hixxqp9cf0xg06gvsrrg4abjbkj0i1pr"; depends=[dplyr purrr rlang rsample tibble tidyselect vctrs]; }; spatialwarnings = derive2 { name="spatialwarnings"; version="3.0.3"; sha256="03a0gb8v6028v6q5w3iap8fn9nkb2rpnabqgzmr2dyxnpfgr9dn3"; depends=[future future_apply ggplot2 gsl plyr Rcpp RcppArmadillo segmented]; }; @@ -17085,24 +16707,22 @@ in with self; { spatstat = derive2 { name="spatstat"; version="2.3-4"; sha256="1nlrp7660y68axlm4pczc5rxbdhbbac1ylh69azr4swj1gbzi82f"; depends=[spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_random spatstat_utils]; }; spatstat_Knet = derive2 { name="spatstat.Knet"; version="2.0-1"; sha256="1mxynbk5sclf94fbrf6vicc48hwmdpxhyxylcmpmlqji4nhs97vx"; depends=[Matrix spatstat spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_random spatstat_sparse spatstat_utils]; }; spatstat_core = derive2 { name="spatstat.core"; version="2.4-2"; sha256="0bhdxyw212yf9y9nsvbz4yy08ka3wr3hkjqpag0ys2s1p22c51b9"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; }; - spatstat_data = derive2 { name="spatstat.data"; version="2.1-4"; sha256="0bq9randa3lgkh2q932iss5cxazq743q6p8asiqqf0yi32b003jq"; depends=[Matrix spatstat_utils]; }; + spatstat_data = derive2 { name="spatstat.data"; version="2.2-0"; sha256="1rf36zy29h9qabpv19hx84gjdiay7i9y9777d2zn17ahyss3p56k"; depends=[Matrix spatstat_utils]; }; spatstat_geom = derive2 { name="spatstat.geom"; version="2.4-0"; sha256="0rwysq9a0ylbsr53q5kfh7wjk5mcdji211sc3s8gwzz8ki09mf1j"; depends=[deldir polyclip spatstat_data spatstat_utils]; }; spatstat_gui = derive2 { name="spatstat.gui"; version="2.0-1"; sha256="1snvy4q0w4yn24n2yxyqvdi70i70zpqa7q13cm38d9135hm35cgk"; depends=[rpanel spatstat spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_random spatstat_utils]; }; spatstat_linnet = derive2 { name="spatstat.linnet"; version="2.3-2"; sha256="0y1py6x0xbw4ad3pjwcspi4ysgfh61f5fd79787zzgyyh2va8y4w"; depends=[Matrix spatstat_core spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils]; }; spatstat_local = derive2 { name="spatstat.local"; version="4.1-5"; sha256="0iq2xppfxp9aa3878z3l4q13qqzn3hg5v7cfv8z8m1mzmnw1r1y8"; depends=[spatstat spatstat_core spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; }; spatstat_random = derive2 { name="spatstat.random"; version="2.2-0"; sha256="0kb01s8k67ydcfqcnz3i55vpiksihh4xsg0w2p2bclxxkpdvpw25"; depends=[spatstat_data spatstat_geom spatstat_utils]; }; - spatstat_sparse = derive2 { name="spatstat.sparse"; version="2.1-0"; sha256="148fxbxss569w73xaqpzwpz9rfjdgznh2ngf06gvm33631222680"; depends=[abind Matrix spatstat_utils tensor]; }; - spatstat_utils = derive2 { name="spatstat.utils"; version="2.3-0"; sha256="06nvn2ffyrskhzaavsy6lmdp0m8askkrp1fnwrhjsj01lbjnq2az"; depends=[]; }; - spatsurv = derive2 { name="spatsurv"; version="1.7"; sha256="01666mp43p0cv0hsn3wbv5vbb4gyjk506spff9ps119bcpqnwqjr"; depends=[fields iterators lubridate Matrix RandomFields raster RColorBrewer rgeos sp spatstat spatstat_core spatstat_geom spatstat_random stringr survival]; }; + spatstat_sparse = derive2 { name="spatstat.sparse"; version="2.1-1"; sha256="00vkvv5pnm82gn7vqnzrrp68y46gbkhdq0hbwqx7nxjvf5lssdcs"; depends=[abind Matrix spatstat_utils tensor]; }; + spatstat_utils = derive2 { name="spatstat.utils"; version="2.3-1"; sha256="08pybliv4r3v4rcazmlfr4a07sjfhrkmksdmhhq9k185vw4474av"; depends=[]; }; + spatsurv = derive2 { name="spatsurv"; version="1.8"; sha256="1ybm4gs4q9zg0frva4hs5raqmbr6p8i9nr2zxi5vrxn8nq7iczmf"; depends=[fields iterators lubridate Matrix raster RColorBrewer rgeos sp spatstat spatstat_core spatstat_geom spatstat_random stringr survival]; }; spbabel = derive2 { name="spbabel"; version="0.5.5"; sha256="0yfkz28nfvl3rm0bxljb3y19zhnx7pabxy81d835pbfmjq5vvp51"; depends=[dplyr rlang sp tibble]; }; spc = derive2 { name="spc"; version="0.6.6"; sha256="0crgbpxf3sqbw48fs8fji4z7dd1sc9nkwxm4frf7rgx3aix71cxk"; depends=[]; }; - spc4sts = derive2 { name="spc4sts"; version="0.5.5"; sha256="14398a65fpdjlr39lwivin551m31mcr5hx47fx2dx7sklq8kr2bg"; depends=[gridExtra LS2Wstat rpart]; }; spcadjust = derive2 { name="spcadjust"; version="1.1"; sha256="016i3zaaq800x4niz4fixa57nfj1m10sz5xskff4vq4v9fjn2sl0"; depends=[]; }; spcosa = derive2 { name="spcosa"; version="0.4-0"; sha256="0aszpwhf4ww6kb7r75i17kf6mqy9cx021b0w5dzd6185p57g6sxv"; depends=[ggplot2 rJava sp]; }; spcov = derive2 { name="spcov"; version="1.01"; sha256="1brmy64wbk56bwz9va7mc86a0ajbfy09qpjafyq2jv7gm7a35ph5"; depends=[]; }; - spcr = derive2 { name="spcr"; version="2.1"; sha256="08lpcj49sj0bc2vz54wigdb9dqn182c11q31n3sdkc41spgk0s7a"; depends=[]; }; spd = derive2 { name="spd"; version="2.0-1"; sha256="00zxh4ri47b61jkcjf5idl9hhlfld6rhczsnhmjsax59884f2i8m"; depends=[KernSmooth]; }; - spdep = derive2 { name="spdep"; version="1.2-3"; sha256="0qd7qjblx49gp07pcf4qb2f93ab3p126pa77g6mq4z3jaa510hak"; depends=[boot deldir e1071 s2 sf sp spData units]; }; + spdep = derive2 { name="spdep"; version="1.2-4"; sha256="0xx6k3rsvsz1hwj0ny8aqfi9ca54x38f8pz8sfya5cggaspxbx59"; depends=[boot deldir e1071 s2 sf sp spData units]; }; spdownscale = derive2 { name="spdownscale"; version="0.1.0"; sha256="0pl560km9629iwy13h7359ab7ixzs09hg986kvk0xbnc348srb86"; depends=[]; }; spdplyr = derive2 { name="spdplyr"; version="0.4.0"; sha256="0lijp78wgrky103137vfk3k4s051qppd6jq6s065k9i7y1azbpc1"; depends=[dplyr rlang sp spbabel tibble]; }; spduration = derive2 { name="spduration"; version="0.17.1"; sha256="1hsz4hcw85f1rj2pd8ppzsd1r8fh4yf6axc11yf2hd287ghzzxzy"; depends=[corpcor forecast MASS plyr Rcpp RcppArmadillo separationplot xtable]; }; @@ -17124,7 +16744,6 @@ in with self; { spectralGraphTopology = derive2 { name="spectralGraphTopology"; version="0.2.3"; sha256="09nsszm2f6q8kz84kn7ihhb627q186jwpvr6fm633l8app4ilf2x"; depends=[MASS Matrix progress Rcpp RcppArmadillo RcppEigen rlist]; }; spectre = derive2 { name="spectre"; version="1.0.2"; sha256="1n5z7970pzhavdf7qhxsb7gzz8dsrwa1pwyxf8n6sxvmdbk8v2z1"; depends=[ggplot2 Rcpp RcppProgress testthat]; }; spectrolab = derive2 { name="spectrolab"; version="0.0.16"; sha256="0qfzkf8dm5r5sbadipcqvfs1965l365g9000rgl9713v9lmshmy6"; depends=[RColorBrewer shiny shinyjs]; }; - sped = derive2 { name="sped"; version="0.2-1"; sha256="05igpk8szdcs6kjhpmd9dmjvqdg199pz3hi0rwkhdjglxivvjzjn"; depends=[pooh]; }; speech = derive2 { name="speech"; version="0.1.4"; sha256="17j4hwfqsazakkdxdrx87dfpmdsh51mms31sm3hpnzh4j7ijcg86"; depends=[dplyr lubridate magrittr pdftools purrr rvest stringr tibble tidyr tm]; }; speechbr = derive2 { name="speechbr"; version="2.0.0"; sha256="0jf0zj64hm1zxbpcry1iff3nddf2wl315whzcbzj8936qfam92p5"; depends=[abjutils dplyr glue httptest httr janitor lubridate magrittr purrr rlang rvest stringr tibble tidyr xml2]; }; speedglm = derive2 { name="speedglm"; version="0.3-4"; sha256="1kj662nfkfhvx37jrbvxd4dyjclz5cm3xh50z7s5rbzapiyxn4hs"; depends=[MASS Matrix]; }; @@ -17140,8 +16759,6 @@ in with self; { spfda = derive2 { name="spfda"; version="0.9.1"; sha256="094j68gyy5yw7d2mn3n864h6vf8nd76x9ypfzc1liggnw7qs0fdl"; depends=[mathjaxr]; }; spfilteR = derive2 { name="spfilteR"; version="1.1.4"; sha256="0cxc7zrzwr07wk7yv26li6fwmbv3q57vdamzalfrj1npszzkg1s7"; depends=[]; }; spflow = derive2 { name="spflow"; version="0.1.0"; sha256="0a5nirccwcc2z4dn3gxdlhdjz7sxv1r23clawy0kwn4ggdkmphp1"; depends=[coda Matrix Rdpack RSpectra]; }; - spftir = derive2 { name="spftir"; version="0.1.0"; sha256="07vw8igy698jx671cj6hmf6ll9xvaq81fb6la7j95pqbd6jl284z"; depends=[pracma]; }; - spgrass6 = derive2 { name="spgrass6"; version="0.8-9"; sha256="05xvdhisad0d7c69mvahzg6pvgvmb6dph50r34981palykic7qhn"; depends=[sp XML]; }; spgs = derive2 { name="spgs"; version="1.0-3"; sha256="0a7zqih8q4imi49in8d2j9wa82savp7d2g4xy4wlwblwf6f2ggsh"; depends=[]; }; spgwr = derive2 { name="spgwr"; version="0.6-35"; sha256="0kcamk33qm3irrp3i7lggxgzk8ldl415a905lxvapv2zaa0cfb2w"; depends=[sp spData]; }; spherepc = derive2 { name="spherepc"; version="0.1.7"; sha256="0y05ylyxzawgjlivaxs513mfjjfmw6fm98b83sq76n8yw56pr9ny"; depends=[geosphere rgl sphereplot]; }; @@ -17152,19 +16769,18 @@ in with self; { spidR = derive2 { name="spidR"; version="1.0.2"; sha256="09n0fz9iqc3n4c72h9hyc0ybzaqzy4l1rypvaig5kl98kx5nng1i"; depends=[httr jsonlite rgbif rworldmap rworldxtra]; }; spider = derive2 { name="spider"; version="1.5.0"; sha256="1y034v42jxjl3vj87iz5kaizq7fwppmn56z7yyvrrmk5ps4nqr1j"; depends=[ape pegas]; }; spiderbar = derive2 { name="spiderbar"; version="0.2.4"; sha256="0lk080s3xksrskc48nckpml74gvs6n7jjr4jgm15jhwp0izjs5y7"; depends=[Rcpp]; }; - spikeSlabGAM = derive2 { name="spikeSlabGAM"; version="1.1-15"; sha256="1kg1vqx9zvn8jqh8ygjifpyd00npqz3ljbs7r3zgh28bclhfywai"; depends=[akima cluster coda ggplot2 gridExtra MASS MCMCpack mvtnorm R2WinBUGS reshape scales]; }; spikes = derive2 { name="spikes"; version="1.1"; sha256="080sna0sgii61kai5sirs6cijnvk1012djwfw705di9y2lvk1hqk"; depends=[emdbook]; }; - spikeslab = derive2 { name="spikeslab"; version="1.1.5"; sha256="0dzkipbrpwki6fyk4hqlql3yhadwmclgbrx00bxahrmlaz1vjzh2"; depends=[lars randomForest]; }; + spikeslab = derive2 { name="spikeslab"; version="1.1.6"; sha256="1slpfps7xdvi3f3q334lilp9m9gi3n8dl00x1j8yyia6mnz0cimk"; depends=[lars randomForest]; }; spinBayes = derive2 { name="spinBayes"; version="0.1.0"; sha256="1qgqxxk4n17wj3q07irm2qj6lwc5188iwwbdkf588hvfy86lwpj8"; depends=[glmnet MASS Rcpp RcppArmadillo]; }; spind = derive2 { name="spind"; version="2.2.1"; sha256="1yasqy086h4dv348krisc024mic0dvdsncqys95l85924djlfipp"; depends=[gee geepack ggplot2 lattice MASS RColorBrewer rje rlang splancs stringr waveslim]; }; spinifex = derive2 { name="spinifex"; version="0.3.6"; sha256="09agdcvdq6cmg7nvr1p9njvixnqmn134wn6kc9v7hiqpiy8s7ldx"; depends=[gganimate ggplot2 magrittr plotly Rdimtools shiny tourr transformr]; }; spinyReg = derive2 { name="spinyReg"; version="0.1-0"; sha256="0kbg7rncrrl5xdsaw9vj909x97mfp77mjnvghczplmnwmmanyn72"; depends=[]; }; spiralize = derive2 { name="spiralize"; version="1.0.5"; sha256="0m0809b34l8mp0czpcq144hw5p10g35lsb8z7l8ls2kclb8xjcs8"; depends=[circlize GetoptLong GlobalOptions lubridate]; }; spiritR = derive2 { name="spiritR"; version="0.1.1"; sha256="1fjr63rl9hwqxzgm4lkb9v74cxxpi4lrlcgjixdm7zgccm8ihdvh"; depends=[httr magrittr xml2]; }; - splancs = derive2 { name="splancs"; version="2.01-42"; sha256="1aph5rns5kzad1vc6y7khs3y8ysf51fgssmskmi0pqi18mvg82lc"; depends=[sp]; }; + splancs = derive2 { name="splancs"; version="2.01-43"; sha256="0j641xipb3nzncxwgf1adrcc95jqinhx68fr55mcixk93xg5cldk"; depends=[sp]; }; splash = derive2 { name="splash"; version="1.0.1"; sha256="0f5ap8gi1nqxq8qbi3dz52hlizln1wxfrx5k06bagvxh8za8a08v"; depends=[]; }; splashr = derive2 { name="splashr"; version="0.6.0"; sha256="0l57w5gwr0p2049z1201nlqsy23h37gsybd1lj3vycxz43ir7213"; depends=[curl dplyr formatR HARtools httr jsonlite lubridate magick openssl purrr scales stevedore stringi xml2]; }; - spldv = derive2 { name="spldv"; version="0.1.0"; sha256="061qs6kqd41kfby2x2kj019plhlk82pf5lah4zyjpn74kaalg7ax"; depends=[car Formula MASS Matrix maxLik memisc numDeriv sphet]; }; + spldv = derive2 { name="spldv"; version="0.1.1"; sha256="0v721z8v0dhnkcbljw592hhlgg32a6sh9hz4lx9p2jpkx8mpz9bb"; depends=[car Formula MASS Matrix maxLik memisc numDeriv spatialreg sphet]; }; splines2 = derive2 { name="splines2"; version="0.4.5"; sha256="0vgwgrkrkl2j6pcr98gylm3q60aiqdj9n9ndpj6szzn3ygjr0j9q"; depends=[Rcpp RcppArmadillo]; }; splinetree = derive2 { name="splinetree"; version="0.2.0"; sha256="0gqb3kwca42crrx6fj42ryl5pkxvankhp1chdlvi5lgg8mzmqsnl"; depends=[ggplot2 mclust mosaic nlme rpart treeClust]; }; splitFeas = derive2 { name="splitFeas"; version="0.1.0"; sha256="1cfiis32h5kkp8r1mndmj4xss9gw96vdzk7q68q3jhbwqiaxp9rp"; depends=[corpcor matrixStats]; }; @@ -17179,12 +16795,11 @@ in with self; { splot = derive2 { name="splot"; version="0.5.2"; sha256="14i2z4br4sc08nwmcj49wnc5fgzf1v7w2a4kz5q453yn9h8ypp1n"; depends=[]; }; spls = derive2 { name="spls"; version="2.2-3"; sha256="0bmb0ai5z80njhypd342i711x0bdkwcvlyn374lyyzj8h3d97mmv"; depends=[MASS nnet pls]; }; splus2R = derive2 { name="splus2R"; version="1.3-3"; sha256="035zd22zcpkh74rik9ws6g8al6vjz7jgrqs5si361bzb5n290p3x"; depends=[]; }; - splusTimeDate = derive2 { name="splusTimeDate"; version="2.5.2"; sha256="06r2px2nsqyvjb1r1gz6wwjyr6rmfzslyxng8ng2n7hwr9ga1kc8"; depends=[]; }; - splusTimeSeries = derive2 { name="splusTimeSeries"; version="1.5.2"; sha256="0z064svaggqajqv8bni4763llkhm2s3s45krvs4w8k8all0h7rxa"; depends=[splusTimeDate]; }; - spm = derive2 { name="spm"; version="1.2.1"; sha256="0gr6dc5xcz4y84iibkfi3gi84yij5vvazi1yrwd54jblf3fx32jr"; depends=[biomod2 gbm gstat psy randomForest ranger sp]; }; - spm12r = derive2 { name="spm12r"; version="2.8.3"; sha256="04bv4x7p2vv9n8zi5axpkcj13h6q08lc6qyd1czvxrpdmzsp40yb"; depends=[git2r matlabr neurobase oro_nifti R_utils]; }; + splusTimeDate = derive2 { name="splusTimeDate"; version="2.5.3"; sha256="10imm0mpnx6ic52khi17dw8lg6z1r3gskbpmqqdhw876fsnf6gmn"; depends=[]; }; + splusTimeSeries = derive2 { name="splusTimeSeries"; version="1.5.4"; sha256="19byxb8nfcnvj257mdx3ly7yzhyyizvd02p76ydgkgpg90kjrqkv"; depends=[splusTimeDate]; }; + spm = derive2 { name="spm"; version="1.2.2"; sha256="0slpy3cmv5l2gbgvy3yfdhzm73427bl39shadpmf3jkkbflcczsn"; depends=[biomod2 gbm gstat psy randomForest ranger sp]; }; spm2 = derive2 { name="spm2"; version="1.1.2"; sha256="1cf5j5gi4h8v5sjlbj279h5la8nscn3n3p3prmci9258593xgkjq"; depends=[e1071 fields gbm glmnet gstat MASS nlme psy randomForest ranger sp spm]; }; - spmoran = derive2 { name="spmoran"; version="0.2.2.2"; sha256="1qfv6h3d7wgg3dwdq0vfhi7134y4qywkac4njxgmaic7cx0hifqi"; depends=[doParallel fields FNN foreach ggplot2 Matrix rARPACK RColorBrewer sp spdep vegan]; }; + spmoran = derive2 { name="spmoran"; version="0.2.2.3"; sha256="1g7fc9yigvr9dx6ci9xhqsvq6f5c7gbycdiswg6lvwr1njxy20n4"; depends=[doParallel fields FNN foreach ggplot2 Matrix rARPACK RColorBrewer sp spdep vegan]; }; spnaf = derive2 { name="spnaf"; version="0.1.0"; sha256="1iqbyvcgxq6m189mzajd0l1p489cplf7k9v7apv4cj929jqxvvkg"; depends=[dplyr magrittr rmarkdown sf spdep tidyr tmap]; }; spnet = derive2 { name="spnet"; version="0.9.1-0"; sha256="1fy0fpgz2k985brfqyza1l49y0w2j9z308n542pgmkzqsnsdscpw"; depends=[shape sp]; }; spnn = derive2 { name="spnn"; version="1.2.1"; sha256="1yj89j7nynfyw1ikm6q5kdwdgiiwxx0aa6kgnri5wfnb4l0356l7"; depends=[MASS Rcpp RcppArmadillo]; }; @@ -17192,14 +16807,15 @@ in with self; { spoiler = derive2 { name="spoiler"; version="1.0.0"; sha256="105shgv62x3qjw4477qfi79h9bdih4n8hg6wn842dyfq940wkr5b"; depends=[htmltools shiny]; }; spongebob = derive2 { name="spongebob"; version="0.4.0"; sha256="1ar5173fwx1am5rgjlnczfla6b49g0azl0h9vn89ipw7f71rr5j7"; depends=[]; }; spongecake = derive2 { name="spongecake"; version="0.1.2"; sha256="13fxizbfjvqkhkmxk5bwv2fj2xyjkbxrxicpdgwpg0wsk4dhj3s8"; depends=[ggplot2 jpeg magrittr plyr]; }; + spooky = derive2 { name="spooky"; version="1.1.0"; sha256="09byqcly6i1mwlkbvww040m6x4nb15v7wggzriyf78wp303chml4"; depends=[fANCOVA ggplot2 greybox imputeTS lubridate modeest moments purrr readr scales tictoc]; }; spork = derive2 { name="spork"; version="0.2.2"; sha256="09n159nkrgpwf6ck24axgsxh6dm1xays9pgx940pzmaq7vzb5ng4"; depends=[ggplot2 latexpdf png]; }; - sporm = derive2 { name="sporm"; version="1.1.1"; sha256="1bj795kmzjjcwvnrwg7dfz4jbfj488iydm0s79wrsgdq4chrrgyb"; depends=[]; }; sport = derive2 { name="sport"; version="0.2.0"; sha256="1wb28iaa35naf5aczijb5g0l41yf098f7c20mjmkcd5w04l1mmks"; depends=[data_table ggplot2 Rcpp]; }; sportyR = derive2 { name="sportyR"; version="1.0.1"; sha256="03l5zyqdrzji58acq5mmczz7nx9yk29hf5dzagpgb8fraq1vvddi"; depends=[dplyr ggplot2 glue]; }; spotGUI = derive2 { name="spotGUI"; version="0.2.3"; sha256="0hybpw0lgqrzrryfp08qvl42hrgdmx2hq7bavxjihm8mp0375dmz"; depends=[batchtools gridExtra httpuv plotly rclipboard rhandsontable shiny shinyBS shinydashboard shinyFiles shinyjs smoof SPOT XML]; }; spotidy = derive2 { name="spotidy"; version="0.1.0"; sha256="0hg8d3piiwp4q3257qsv5l41zc3c5a8mbq595ci63id8fc2q2pkd"; depends=[dplyr httr magrittr purrr]; }; spotifyr = derive2 { name="spotifyr"; version="2.2.3"; sha256="1gpi7d40rdx4dvx5699xj5zisz48arwni18sszvp8phvhgqbj0lh"; depends=[assertthat dplyr genius ggridges httr janitor jsonlite lubridate magrittr purrr readr rlang rvest stringr tibble tidyr xml2]; }; spotoroo = derive2 { name="spotoroo"; version="0.1.2"; sha256="04zmb0smljr0yszhd789mqm5ds3l71k5cfd9v173d04r5vv8z77a"; depends=[cli dplyr geodist ggbeeswarm ggExtra ggplot2 ggrepel patchwork progress]; }; + spots = derive2 { name="spots"; version="0.1.0"; sha256="0q5jfb99hrlz5c1jnn4a96pg07bccbw0khfq8mvaq4r3vdykzmqy"; depends=[Matrix RSpectra]; }; spp = derive2 { name="spp"; version="1.16.0"; sha256="08zxxgyp0h6733b08jmml7k4rhfd3mi5dda3jrzid0s184y0z29w"; depends=[BH caTools Rcpp Rsamtools]; }; spqdep = derive2 { name="spqdep"; version="0.1.2"; sha256="0q2sp76kgrmw2w033m9i69vx0shziazr31akjmighcy1pdz3b695"; depends=[broom dplyr ggplot2 gridExtra gt gtools igraph lwgeom magrittr Matrix purrr rgeoda rsample sf sp spatialreg spdep tidyr]; }; spray = derive2 { name="spray"; version="1.0-19"; sha256="1x9zn1hw7ndl28c49bka1bqay9wrjvc66d3bs7v7bj53zqmgkac3"; depends=[disordR magic mathjaxr partitions Rcpp]; }; @@ -17209,8 +16825,6 @@ in with self; { springer = derive2 { name="springer"; version="0.1.5"; sha256="197zmn90zrqv9g0kzwnzs14g1sh3cx2hnp5x92dfp96xcb650dz1"; depends=[MASS Rcpp RcppArmadillo]; }; springpheno = derive2 { name="springpheno"; version="0.5.0"; sha256="16pa56k1pbazv3vx5lhzc8n3pazrfh1q4bi7116bbvsdgpp9vs8g"; depends=[]; }; sprintr = derive2 { name="sprintr"; version="0.9.0"; sha256="0nnzjn7zrcgcmk3rs0hn56jcjrzrn5z0kc77bv4zzvbz5vr8gbwj"; depends=[glmnet Rcpp RcppArmadillo]; }; - sprm = derive2 { name="sprm"; version="1.2.2"; sha256="0iyijkjnyz4yx2cmazlnhkk0f5ls0c2q2aikwlzl13w6zbj040a8"; depends=[cvTools ggplot2 pcaPP reshape2 robustbase]; }; - sprsmdl = derive2 { name="sprsmdl"; version="0.1-0"; sha256="09klwsjp5w6p7dkn5ddmqp7m9a3zcmpr9vhcf00ynwyp1w7d26gi"; depends=[]; }; sprtt = derive2 { name="sprtt"; version="0.1.0"; sha256="1lj4qrn8ajl9lmx9qrcxrrd187khs3afvmf2hpwmakxfn6sajm0z"; depends=[]; }; spruce = derive2 { name="spruce"; version="0.99.1"; sha256="1kklv4d2ycjcxv183cpqa6qn46zn8nww1z8xn4sy7ipz394i10cf"; depends=[BayesLogit dplyr ggplot2 igraph MCMCpack mvtnorm patchwork Rcpp RcppArmadillo rlang Seurat tidyr tidyselect truncnorm]; }; sps = derive2 { name="sps"; version="0.1.3"; sha256="0lgrzkwbkyzwbk4fyl012qqvnfmq1ina8cdg3qr25bwjhwhscipx"; depends=[]; }; @@ -17219,7 +16833,7 @@ in with self; { spselect = derive2 { name="spselect"; version="0.0.1"; sha256="02aiml4dh40n6yl52ypramn4847ykdi4y5lhsmchnnp4nnnqycsn"; depends=[magic pracma tester]; }; spsh = derive2 { name="spsh"; version="1.1.0"; sha256="1rmsgp0mrb4153v5f5xby7r3izvgz1a0vi63g5p9q5jd6z0gd2i1"; depends=[DEoptim FME hypergeo lhs pracma Rdpack]; }; spsi = derive2 { name="spsi"; version="0.1"; sha256="0q995hdp7knic6nca0kf5yzkvv8rsskisbzpkh9pijxjmp1wnjrx"; depends=[plot3D]; }; - spsur = derive2 { name="spsur"; version="1.0.2.0"; sha256="0dkbl5x2h1l34ybhb4zdygnf7fdga78aaq4nb9kqyw6xjfrcsazn"; depends=[car Formula ggplot2 gmodels gridExtra knitr lmtest MASS Matrix minqa numDeriv Rdpack rlang rmarkdown sparseMVN spatialreg spdep]; }; + spsur = derive2 { name="spsur"; version="1.0.2.1"; sha256="0nqfwqydcnvrk50swcs9ji47f68nvps9j955ib6j5yri29s4s0a4"; depends=[car Formula ggplot2 gmodels gridExtra knitr lmtest MASS Matrix minqa numDeriv Rdpack rlang rmarkdown sparseMVN spatialreg spdep sphet]; }; spsurv = derive2 { name="spsurv"; version="1.0.0"; sha256="11jlbzvzxv3d1d0nwpbii46ddvphglrxv25rw7pvxbybcx2i7k6x"; depends=[BH coda loo MASS Rcpp RcppEigen rstan rstantools StanHeaders survival]; }; spsurvey = derive2 { name="spsurvey"; version="5.3.0"; sha256="1wvl6lbww82c1z83928zgn5l1ciayppb6k84l2syxn6fs1xjadbc"; depends=[boot crossdes deldir lme4 MASS sampling sf survey units]; }; spt = derive2 { name="spt"; version="2.5.1"; sha256="04j38d2b35p4798znnc49vqrg8r8bygwi07vybfj3nzimlp2mkrn"; depends=[]; }; @@ -17235,8 +16849,8 @@ in with self; { sqlutils = derive2 { name="sqlutils"; version="1.2"; sha256="0dq4idg8i4hv9xg8jllllizqf3s75pdfm1wgncdjj52xhxh169pf"; depends=[DBI roxygen2 stringr]; }; squant = derive2 { name="squant"; version="1.1.4"; sha256="1z4qi1svv6186gj3nh4z3hvjd54i7grj6ckgdyk4dmyn7zh8fw5w"; depends=[ggplot2 glmnet survival]; }; squash = derive2 { name="squash"; version="1.0.9"; sha256="1x66iamj5pir6l9aqx4x7xylxxjpjrw8vcix9rbhfd0y0y2iqf7z"; depends=[]; }; - squashinformr = derive2 { name="squashinformr"; version="0.2.5"; sha256="1403h52il9kyf16cm44lvib8sgdq0njrqsci8ng5ngryg2h2lacc"; depends=[dplyr Hmisc janitor lubridate naniar plyr polite rlang rvest stringr tibble tidyr]; }; - squeezy = derive2 { name="squeezy"; version="1.1"; sha256="1xj3jvyb6k09z6p4ifpf9zp3ngbr36qwxi16iz3jgldkhaw9a0wy"; depends=[glmnet Matrix multiridge mvtnorm]; }; + squashinformr = derive2 { name="squashinformr"; version="0.2.6"; sha256="0qsgvcmw4yxsj3y2li3k33mycr2k3n8v9b09rcvs0qk036fmivgx"; depends=[dplyr Hmisc janitor lubridate naniar plyr polite rlang rvest stringr tibble tidyr]; }; + squeezy = derive2 { name="squeezy"; version="1.1-1"; sha256="1dykp6hz056f9ajx1sg5bl89v4qmn41lsp9p9zzd9yib6d6ryfsm"; depends=[glmnet Matrix multiridge mvtnorm]; }; squid = derive2 { name="squid"; version="0.2.1"; sha256="1zpm787ifzrhww32ghi57ii37p9dssq7q7gbai9iqass78z90y2j"; depends=[arm brms data_table ggplot2 lme4 MASS plotly shiny shinyMatrix]; }; sra = derive2 { name="sra"; version="0.1.3"; sha256="0bdxgsz177szfqmvffidgkhl0lrdd7c1nzdvh7ijx99zmi5ww71n"; depends=[]; }; srcr = derive2 { name="srcr"; version="1.1.0"; sha256="1cv4j27w9lssllih0lg172x1p001sk13p9hg39579lx6rpb9l75q"; depends=[DBI dplyr jsonlite]; }; @@ -17253,14 +16867,13 @@ in with self; { sscor = derive2 { name="sscor"; version="0.2"; sha256="1kcrr90cxg6k4qkc3pidhkwf4dsnlgbxczxigr2afwpd9cpf104c"; depends=[mvtnorm pcaPP robustbase]; }; ssd = derive2 { name="ssd"; version="0.3"; sha256="1z61n9m6vn0ijawyz924ak0zfl9z13jsb4k4575b7c424ci2p6gy"; depends=[]; }; ssddata = derive2 { name="ssddata"; version="1.0.0"; sha256="0njcnjcgdghwrbjcbiq4yfn7nq9h4dvylrqh57c6vx35yqc4g375"; depends=[chk dplyr Rdpack]; }; - ssdtools = derive2 { name="ssdtools"; version="1.0.0"; sha256="0ndndfmqczm2bghaymflgmr57rqqvwnj18v7r6vv5czafh391nbh"; depends=[abind chk doFuture foreach furrr generics ggplot2 goftest lifecycle plyr purrr Rcpp scales ssddata stringr tibble TMB universals VGAM]; }; + ssdtools = derive2 { name="ssdtools"; version="1.0.2"; sha256="0qnlawdb7y4wryp4ksp641bkv94hz1ymv6l79l3hmyqn0wy73g6m"; depends=[abind chk doFuture foreach furrr generics ggplot2 goftest lifecycle plyr purrr Rcpp scales ssddata stringr tibble TMB universals VGAM]; }; sse = derive2 { name="sse"; version="0.7-17"; sha256="0aqpi70rgmh2kmf11z2cvyl8c9klv8jm81pcpkzjrw3pbpgkqizf"; depends=[lattice]; }; ssev = derive2 { name="ssev"; version="0.1.0"; sha256="1iw07gw9vhg073s5kkxh5f1si6p998rc1i2zglnpk5c3pi3l55wp"; depends=[MESS pwr]; }; ssfa = derive2 { name="ssfa"; version="1.2"; sha256="14v10lbv3wlrnz3b2i8i56rj5rr257qvwa8w9j6xqswllb80132r"; depends=[Matrix maxLik sp spatialreg spdep]; }; ssfit = derive2 { name="ssfit"; version="1.1"; sha256="1fais0msi2ppgfp0vbx3qri7s9zs51i7n90w36xkwwac4f46bq5y"; depends=[survey]; }; - ssgraph = derive2 { name="ssgraph"; version="1.12"; sha256="0mcg8bzgx0376f72xxqmsfwmnmfk6lcmam19d28psr1sxnhngklj"; depends=[BDgraph]; }; + ssgraph = derive2 { name="ssgraph"; version="1.13"; sha256="14qaiggbss7xv25wvvsh76lia8kkh092z6kfjjvd0g05jwjxn8s9"; depends=[BDgraph]; }; ssh = derive2 { name="ssh"; version="0.8.0"; sha256="0y9rrvn21mc9ivjlz6zmg5h282d2gycyjda8sh9k0gx0y4c2m30i"; depends=[askpass credentials]; }; - ssh_utils = derive2 { name="ssh.utils"; version="1.0"; sha256="08313zzzgcyvzkrkq0w0yf748ya1a9shx5xnan5891v0lah9v0b1"; depends=[stringr]; }; sship = derive2 { name="sship"; version="0.7.4"; sha256="0j36mx15jhg90vpycw57zghw8x9jb8s865yzzrpgz8pg7avgqqzf"; depends=[httr jsonlite openssl RCurl yaml]; }; ssimparser = derive2 { name="ssimparser"; version="0.1.1"; sha256="01c9kbvdrkchf4rad9hysyflpkgdj294lbk94fc5pkc49fqznmrx"; depends=[airportr dplyr magrittr stringr tidyr]; }; ssize_fdr = derive2 { name="ssize.fdr"; version="1.2"; sha256="0y723lwsnmk3rxbhlsrny9hiy07a5p255ygy9qkj6mri64gk1hby"; depends=[]; }; @@ -17269,14 +16882,13 @@ in with self; { ssmrob = derive2 { name="ssmrob"; version="1.0"; sha256="1xzhk8ni6375p2nfnl39x51ny2wi53a09fkr95nrdbxhkcm5flvz"; depends=[MASS robustbase sampleSelection]; }; ssmsn = derive2 { name="ssmsn"; version="0.2.0"; sha256="0fzqdkqhj5hh8pzcwh7i0rglgdq22a5mriyis8r1vhlkdc7n5m39"; depends=[MCMCpack]; }; sspline = derive2 { name="sspline"; version="0.1-6"; sha256="0d6ms8szyn39c7v0397d5ar2hrl8v1l2b7m8hlj37hgp70b9s55h"; depends=[]; }; - sspse = derive2 { name="sspse"; version="0.6"; sha256="1296893wgg0s6z5bv9a3k39gbxazvljl4dxiv4ma1s73nhz0xan9"; depends=[coda RDS scam]; }; + sspm = derive2 { name="sspm"; version="0.9.1"; sha256="1j62cphwqfkn6jmabqcqcbxd65by41ghvf3cpnbj6n20wakpkh05"; depends=[checkmate cli dplyr magrittr mgcv purrr rlang sf stringr tibble tidyr units]; }; + sspse = derive2 { name="sspse"; version="1.0.0"; sha256="1flqkdn2p565zzrv1m03cdjnlni1xg3fn12cqqvhfpz9f989klxa"; depends=[coda KernSmooth RDS scam]; }; ssr = derive2 { name="ssr"; version="0.1.1"; sha256="0l2f8lsmwv2f4y708g32jy2s4jj0j686830qp4a5ailyrdbbz1ix"; depends=[caret e1071]; }; ssrm_logmer = derive2 { name="ssrm.logmer"; version="0.1"; sha256="1i9rrsixl3swd04w1gf9gf1r2wb9nkvwhc8ld4bx4zxzm1031f67"; depends=[sfsmisc statmod]; }; ssrn = derive2 { name="ssrn"; version="0.1.0"; sha256="1s78wiyn6ff6f55cp5knhram6m61cbckdnzm9q6imrjwngjci6cx"; depends=[dplyr magrittr purrr rlang stringr tibble tidyr]; }; sss = derive2 { name="sss"; version="0.2.0"; sha256="1rgss015zbja1gpcxrq76nhssb5kh84lndi0xkn3yb02g2b2qlgi"; depends=[assertthat xml2]; }; sssc = derive2 { name="sssc"; version="1.0.0"; sha256="00m5zfd3jnbxa8x76v4pfyl4qdfq90n8rqx4hngany0ka1z5g7m6"; depends=[changepoint e1071 ggplot2 VGAM]; }; - sstModel = derive2 { name="sstModel"; version="1.0.0"; sha256="04dvj6dbxidn1df2rslppl2pw2ql09rag39jrzdbnv6z20szbbd9"; depends=[data_table MASS openxlsx readxl shiny shinydashboard]; }; - ssvd = derive2 { name="ssvd"; version="1.0"; sha256="1fdpr38qi59ijrz16jixn6ii1hvmxfjirjqfcp7dxrqz9nx8x0sk"; depends=[]; }; ssym = derive2 { name="ssym"; version="1.5.7"; sha256="0l5d921vlhd4qwddllrgcxpq3bhivvy5ikh3ixdy3s140rzpgwrv"; depends=[Formula GIGrvg normalp numDeriv sandwich survival]; }; st = derive2 { name="st"; version="1.2.7"; sha256="0j29k9fg8659yw1jwmcakiic51rin1dj1fmvpapy2wmz4c3pr0fp"; depends=[corpcor fdrtool sda]; }; stR = derive2 { name="stR"; version="0.5"; sha256="1nlb2d8a11kxiipv96sfmmcq185051vmdiwjjqayln143gvhzp7w"; depends=[foreach forecast Matrix quantreg SparseM]; }; @@ -17293,15 +16905,16 @@ in with self; { stabreg = derive2 { name="stabreg"; version="0.1.2"; sha256="1jrxyv0d33vd9vdlj1cv1a2qdz8iqgr726f54dgazwsz3cpyy2ia"; depends=[numDeriv]; }; stabs = derive2 { name="stabs"; version="0.6-4"; sha256="1nf1yg14cgxrs4np1yghpzw1nczaslfv3rvf3918wrlzg0vp6l7q"; depends=[]; }; stackoverflow = derive2 { name="stackoverflow"; version="0.7.0"; sha256="0zv8bxzw4pgaa5ra8wsb9p7g8bwffdhc6gqsfrcs61zva7v9izc2"; depends=[]; }; - stacks = derive2 { name="stacks"; version="0.2.2"; sha256="0fmar6zfhckka0lbn89yhkss0l5zc4d1yy9clid9v5b87g8ka6xh"; depends=[butcher cli dials dplyr foreach generics ggplot2 glmnet glue parsnip purrr recipes rlang rsample tibble tidyr tune workflows workflowsets yardstick]; }; - stacomirtools = derive2 { name="stacomirtools"; version="0.6.0"; sha256="1qy9rw38qa0ng7gcnbccws8cm8175rficm5b1jn956qbkcxkz0w8"; depends=[DBI pool RODBC RPostgres xtable]; }; - stagePop = derive2 { name="stagePop"; version="1.1-1"; sha256="0949r5ibl3sb10sr5xsswxap3wd824riglrylk7fx43ynsv5hzpy"; depends=[deSolve PBSddesolve]; }; - stagedtrees = derive2 { name="stagedtrees"; version="2.2.0"; sha256="01qb8pw0al3b3b6smcapd61i81p6xw3hh1x8i6dsb73pdvpbfyxj"; depends=[]; }; + stacks = derive2 { name="stacks"; version="0.2.3"; sha256="0g1sp86zs340glh2c5yr5jijxd4slanflpydbqvlcpxmqdpfy6cg"; depends=[butcher cli dplyr foreach ggplot2 glmnet glue parsnip purrr recipes rlang rsample tibble tidyr tune workflows workflowsets yardstick]; }; + stacomirtools = derive2 { name="stacomirtools"; version="0.6.0.1"; sha256="1hw1k0mjddw46j3aagry2mx43wak03kkx4zzxplgcafwks5bp82y"; depends=[DBI pool RODBC RPostgres xtable]; }; + stagePop = derive2 { name="stagePop"; version="1.1-2"; sha256="0yaxdq0p47qkjwjrsj4vb8rif9ip2k0vjnvz1k87h1mcslkfzygs"; depends=[deSolve PBSddesolve]; }; + stagedtrees = derive2 { name="stagedtrees"; version="2.2.1"; sha256="1hpli4zbqhswrnpzygg53zfw1rawmbj1cygvc4zprr37x0ijcjvv"; depends=[]; }; staggered = derive2 { name="staggered"; version="1.1"; sha256="0z9358qbgn637j8iz5qwr4nyrlvi9w85l325vxpc61mcwksx5ip8"; depends=[coop dplyr magrittr MASS purrr Rcpp RcppEigen reshape2 tidyr]; }; stampr = derive2 { name="stampr"; version="0.2"; sha256="10mc71kgnw5712q2gvzd4bmjaw1879r7s599hfsjap21idqb2k2m"; depends=[deldir maptools raster rgdal rgeos sp spdep]; }; stan4bart = derive2 { name="stan4bart"; version="0.0-3"; sha256="1zg008h391fxwqjbq2g41ma0cq1p867xr7gcli7mhw5i4qlkk20d"; depends=[BH dbarts Matrix Rcpp RcppEigen RcppParallel]; }; standardize = derive2 { name="standardize"; version="0.2.2"; sha256="008nz9vf08qxwdsn373yzpmsw5lhbm6mpm6dlwyys58wq0bdvh28"; depends=[lme4 MASS stringr]; }; standartox = derive2 { name="standartox"; version="0.0.1"; sha256="1b5w66x4v8hfxzp3ahw97my6m0rcn22iv5nhgm2wzdq0if0cq8py"; depends=[curl data_table fst httr jsonlite]; }; + stanette = derive2 { name="stanette"; version="2.21.4"; sha256="0417wbvc1gqkfnqg736cljbf0yg1csv7s98ndzzw7f18wbh69nqk"; depends=[BH brew coda ggplot2 gridExtra inline lattice loo pkgbuild Rcpp RcppEigen RcppParallel StanHeaders V8]; }; stapler = derive2 { name="stapler"; version="0.7.1"; sha256="1bzhahn72fzm2bjpis76hphv8whnkp2jq8bm1qldadhng4z1nsak"; depends=[matrixStats RNifti]; }; staplr = derive2 { name="staplr"; version="3.1.1"; sha256="0g3a13qndi4w35wq9bm0gb2b8v9svih9gbj5ymggqlcwz1dzywga"; depends=[assertthat glue rJava stringr XML]; }; stargazer = derive2 { name="stargazer"; version="5.2.3"; sha256="0ra284jxjb1n6sd3114zf5l5pjrb7m7j073k8bhnrx8wl549p3i0"; depends=[]; }; @@ -17313,8 +16926,8 @@ in with self; { starsTileServer = derive2 { name="starsTileServer"; version="0.1"; sha256="1nw13r5gf8chr8zc3ypc6zzq811y8m0m2yin5y1gvim3wkfz63xj"; depends=[assertthat leaflet plumber png R6 rlang sf stars units]; }; starschemar = derive2 { name="starschemar"; version="1.2.0"; sha256="0jjaic1zwdc3lvdlgs0vzkjjivjs2dskmhx4qg469ban34az0591"; depends=[dplyr generics pander purrr readr rlang snakecase tibble tidyr tidyselect]; }; startR = derive2 { name="startR"; version="2.2.0"; sha256="12kigspfpmzibnr7y8m906qj1hm596wx8asghi0fd4598nk1w0s3"; depends=[abind bigmemory ClimProjDiags easyNCDF future multiApply PCICt s2dv]; }; - starter = derive2 { name="starter"; version="0.1.8"; sha256="003ih4035hhka5cghr5j3h0gc9a2fxdafag8ffxxg8cvigh2m7fm"; depends=[dplyr fs gert glue here purrr R_utils readr renv rlang stringr tibble usethis]; }; - startup = derive2 { name="startup"; version="0.17.0"; sha256="0i9qk9kqwqrgsazivg4prar48h1rvy2fiwrv2igmqggy253pnipm"; depends=[]; }; + starter = derive2 { name="starter"; version="0.1.9"; sha256="1n5viy6pbkvd7d8gig2l9ywl5vhjxmqjsxdw78s7bggpcv12a1v7"; depends=[dplyr fs gert glue here purrr R_utils readr renv rlang stringr tibble usethis]; }; + startup = derive2 { name="startup"; version="0.18.0"; sha256="0i1yaffpn2mp4w5y52aya3kya1adwqyxzc55jk288ccc2dv25bz3"; depends=[]; }; startupmsg = derive2 { name="startupmsg"; version="0.9.6"; sha256="0vkqxir4ady4dn9s70dfg1fxck2xg8vnmrmxjzvk01i6pc9zyq0x"; depends=[]; }; starvars = derive2 { name="starvars"; version="1.1.10"; sha256="1mq31g05ahpsmda2zrmkg1dlaqqk4c9hm9fjzhgrsxlg4j3klbbf"; depends=[doSNOW foreach ks lessR MASS matrixcalc optimParallel quantmod vars xts zoo]; }; starvz = derive2 { name="starvz"; version="0.7.1"; sha256="0j22605vh0fpf17l78i3x9q5xia9qx841sg7hxhcjybn7vfkafsj"; depends=[arrow BH data_tree dplyr ggplot2 gtools lpSolve magrittr patchwork purrr RColorBrewer Rcpp readr rlang stringr tibble tidyr yaml zoo]; }; @@ -17329,7 +16942,7 @@ in with self; { statcomp = derive2 { name="statcomp"; version="0.1.0"; sha256="0793k14rxiwq98zlrbsmbbkjn5z2ny5c90pia7cx3s77a3wdc96l"; depends=[Matrix zoo]; }; statebins = derive2 { name="statebins"; version="1.4.0"; sha256="1v67da939qg672aqni2i37w70pgasgx6r55b4fjjc3zzviq8gipx"; depends=[ggplot2 scales]; }; states = derive2 { name="states"; version="0.3.1"; sha256="1yi7yigmxjcpa2p75bq0jj1pmiv5xh6zsxhayg7pa7p7fqdl3d9i"; depends=[dplyr lifecycle rlang]; }; - statespacer = derive2 { name="statespacer"; version="0.4.0"; sha256="06qjbnp40mkbjxq14cwzpwcqymafm14cli1kmjfqwl4g1v9bvsx3"; depends=[Rcpp RcppArmadillo Rdpack]; }; + statespacer = derive2 { name="statespacer"; version="0.4.1"; sha256="006x2lxii82zj7baizwiykml74vn0yayxd2lpjwpbl9czjp85b3a"; depends=[Rcpp RcppArmadillo Rdpack]; }; statgenGWAS = derive2 { name="statgenGWAS"; version="1.0.8"; sha256="0n2vkmn1cgping3h05bn66m4yhsd55df9g6iv1y3pz11zvw4w28q"; depends=[data_table ggplot2 Rcpp RcppArmadillo sommer]; }; statgenGxE = derive2 { name="statgenGxE"; version="1.0.4"; sha256="12v9a1lg12pmhzk28c929j1vhhh5x9gzb6ia9izvji2zjx2yigk4"; depends=[emmeans ggplot2 gridExtra knitr lme4 statgenSTA xtable]; }; statgenHTP = derive2 { name="statgenHTP"; version="1.0.5"; sha256="1lclxc4al3h7z5cbjhmm6p1hr22gysz16hlvfams37czbc2prlha"; depends=[animation factoextra ggforce ggnewscale ggplot2 gridExtra locfit lubridate reshape2 scales SpATS]; }; @@ -17342,7 +16955,7 @@ in with self; { statisfactory = derive2 { name="statisfactory"; version="1.0.1"; sha256="0i5z9f1q7wi0qdgr0zj15x1q3jzavivnkwf07y5d1ch3nqxa4nqw"; depends=[omnibus rlist]; }; statmod = derive2 { name="statmod"; version="1.4.36"; sha256="1hkvklcav6gj4zib4g3b4xwsdsbsmnzdblr0v6jaqv227p49gs0l"; depends=[]; }; statnet = derive2 { name="statnet"; version="2019.6"; sha256="17dj6vjnjyqrfhzjq1lys5b29j942kd15zffb69jidni3slf20q9"; depends=[ergm ergm_count network networkDynamic sna statnet_common tergm tsna]; }; - statnet_common = derive2 { name="statnet.common"; version="4.5.0"; sha256="0bw8dwnv568i60xrj6d7gv0hnna1x7rvqaayy5i0827khvdj7nrw"; depends=[coda]; }; + statnet_common = derive2 { name="statnet.common"; version="4.6.0"; sha256="07djgc6qbxahiy5v15lfayxbj4188lxsb8xcs7hnbm2hic953bfx"; depends=[coda]; }; statnetWeb = derive2 { name="statnetWeb"; version="0.5.6"; sha256="1haf2kr1mwvaz4hlwla2ysbcy3sbfcg3i4hyiy9y6lcffvy4w9w0"; depends=[ergm lattice latticeExtra network RColorBrewer shiny sna]; }; statnipokladna = derive2 { name="statnipokladna"; version="0.7.0"; sha256="0xds27abs9x853nhy5xljldmxh5xrkxfgn5q6qw8b093ynrsvbrp"; depends=[curl dplyr httr jsonlite lifecycle lubridate magrittr purrr readr rlang stringi stringr tibble tidyr tidyselect usethis xml2]; }; statprograms = derive2 { name="statprograms"; version="0.2.0"; sha256="0m7px7fmpz2zzlfdi7rbllcjvcjp8iy94f6fa1w4xinh7vz3y6vq"; depends=[]; }; @@ -17357,15 +16970,16 @@ in with self; { stcov = derive2 { name="stcov"; version="0.1.0"; sha256="166w929sgd7nanw1zjhzwv50hd5vqhgsrgxnsga4dzrcvndalw70"; depends=[]; }; stdReg = derive2 { name="stdReg"; version="3.4.1"; sha256="0x4awgbja70mdpbavgkg9mpnrxxc0qpsnl8i3rj9hs4vwbdkalr8"; depends=[data_table drgee numDeriv survival]; }; stddiff = derive2 { name="stddiff"; version="3.0"; sha256="1z6rdchf46aaq0z9bp4dlc4h3swrgyjfdvg40f4lkyg5sgs4sliy"; depends=[]; }; + stdmod = derive2 { name="stdmod"; version="0.1.7.1"; sha256="08qpsn3y0c49zj9hfivbypfs2smp6cqla5z57yx6p37dy4a5g323"; depends=[boot ggplot2]; }; stdvectors = derive2 { name="stdvectors"; version="0.0.5"; sha256="0gxylknr146qyg9aj22md076cdhrsz75dg25a1hx8525cm71nwd6"; depends=[Rcpp]; }; steadyICA = derive2 { name="steadyICA"; version="1.0"; sha256="0mcalbsgajdpk45k9vpyavn079063hw4ihkw72n9wcy5nb0da14g"; depends=[clue combinat MASS Rcpp]; }; - steepness = derive2 { name="steepness"; version="0.2-2"; sha256="0bw7wm7n2xspkmj90qsjfssnig683s3qwg1ndkq2aw3f6clh4ilm"; depends=[]; }; - stellaR = derive2 { name="stellaR"; version="0.3-3"; sha256="098sz6b8pl3fyca3g6myp97nna368xhxf8krmibadnnsr49q5zs9"; depends=[]; }; + steepness = derive2 { name="steepness"; version="0.3-0"; sha256="1lv2n4s8dj7axsmwmpfp4aw6v530r7437f44533pbx6p4n71hpzl"; depends=[]; }; + stellaR = derive2 { name="stellaR"; version="0.3-4"; sha256="0spn25fbsfswx2rshzk34pqkicynyl256a4f7xrh51bhyh9qff44"; depends=[]; }; stemmatology = derive2 { name="stemmatology"; version="0.3.2"; sha256="1l2y4jlszz1dnafdl2wqqfgdjis07i3gzfnp1v1af32pvjy4zqhw"; depends=[cluster igraph xml2]; }; stencilaschema = derive2 { name="stencilaschema"; version="1.0.0"; sha256="117vl2h78ndnb70s8mpd0bs1n6h1vizv4wzn6g4y9j12ma63nldb"; depends=[]; }; stepPenal = derive2 { name="stepPenal"; version="0.2"; sha256="08gizl6c606ibbv7x2rdvfw37rghkrprwszha79yngkzpajw8gql"; depends=[caret dfoptim glmnet mvtnorm pROC]; }; stepPlr = derive2 { name="stepPlr"; version="0.93"; sha256="1i54nyz8z5vq3mzfh6h2vd1q0hsdazc4mhrj9ad0zdvn0qnz61lv"; depends=[]; }; - stepR = derive2 { name="stepR"; version="2.1-1"; sha256="0mz88d7214g59nvr40c4gf4grq9skjqqlfgydbdzmc4l315nr4zv"; depends=[digest lowpassFilter R_cache Rcpp]; }; + stepR = derive2 { name="stepR"; version="2.1-3"; sha256="1v1q4skd3k74nsdkv4ly5h1w10hlxpzcscswghan8r27k502vq12"; depends=[digest lowpassFilter R_cache Rcpp]; }; stepSplitReg = derive2 { name="stepSplitReg"; version="1.0.1"; sha256="1xp9xrshb1fa76vjk970a0wss3zpsggb4skqklqa7zq87wcq4ly2"; depends=[nnls Rcpp RcppArmadillo SplitGLM]; }; stepdownfdp = derive2 { name="stepdownfdp"; version="1.0.0"; sha256="1yqzxn4d52ih03f0mpvb9dw9pn9jfbgnyay1pfhh112zml5h6i3m"; depends=[pracma]; }; stepgbm = derive2 { name="stepgbm"; version="1.0.0"; sha256="1psjnxc7dadbm1405wm3vgsf9m2pn8bm82rn9md3cxhp33jqh1bx"; depends=[gbm spm steprf]; }; @@ -17375,7 +16989,7 @@ in with self; { steps = derive2 { name="steps"; version="1.2.1"; sha256="04n5m7a5yp3karhiwgcl6fzfp85iad2xymdwp1kyqbagx2acyrka"; depends=[future future_apply memuse raster rasterVis Rcpp viridisLite]; }; stevedata = derive2 { name="stevedata"; version="0.7.0"; sha256="1shi1abzf4vkz790f6b4720g28hh6kzsi40mdw7gp9xwr97a1dyz"; depends=[]; }; stevedore = derive2 { name="stevedore"; version="0.9.4"; sha256="0qf7qid8sv3agzci7kvgh204h3p6bk60bh45zri987j2qqjjxiiy"; depends=[crayon curl jsonlite yaml]; }; - stevemisc = derive2 { name="stevemisc"; version="1.4.0"; sha256="009fl8j1wmi4r907bimha3is0vpicn6rcfdzajnvm98rwrx9cp55"; depends=[arm bib2df dplyr forcats ggplot2 httr labelled lme4 magrittr purrr rlang rmarkdown stringr tibble tidyr]; }; + stevemisc = derive2 { name="stevemisc"; version="1.4.1"; sha256="1d0avg7f1r95k6dvm1vhvji2gadqxkm77pbnljad2p4145sxc41x"; depends=[arm dplyr forcats ggplot2 httr labelled lme4 magrittr purrr rlang rmarkdown stringr tibble tidyr]; }; stevetemplates = derive2 { name="stevetemplates"; version="0.7.0"; sha256="1cbxh71c7ffxb22zs5yb33h62ipmnp2a9x2i6sdlhix6vr358705"; depends=[rmarkdown]; }; stfit = derive2 { name="stfit"; version="0.99.8"; sha256="0js09v04ik5m3d9iz9waq0yigvg2g6n75m4zm5dc0nz3yr1irb88"; depends=[abind doParallel fda foreach Matrix raster rasterVis RColorBrewer Rcpp]; }; stickr = derive2 { name="stickr"; version="0.3.1"; sha256="0krz123vz4bdcdi4p27r637pgz4rcj6kmyiqdf5x69riddvfxx8r"; depends=[base64enc fs gh stringr]; }; @@ -17403,14 +17017,14 @@ in with self; { stockR = derive2 { name="stockR"; version="1.0.74"; sha256="002i0bhyskwyjjczfa752ghn19hvqhdyzdfkpvci3hb66rh94x65"; depends=[gtools RColorBrewer]; }; stockfish = derive2 { name="stockfish"; version="1.0.0"; sha256="1il3na3d96k34vj62pvxrs2ah3a9ly8ww3gi3nr0459piw4wd611"; depends=[processx R6]; }; stocks = derive2 { name="stocks"; version="1.1.4"; sha256="0b6rl7pfkgzbpwnv7zzkr36hs5f1zb60d16ijslf7g9m25vvcyg6"; depends=[dvmisc Hmisc lubridate quantmod rbenchmark RColorBrewer Rcpp TTR zoo]; }; - stoichcalc = derive2 { name="stoichcalc"; version="1.1-3"; sha256="0z9fnapibfp070jxg27k74fdxpgszl07xiqfj448dkydpg8ydkrb"; depends=[]; }; + stoichcalc = derive2 { name="stoichcalc"; version="1.1-4"; sha256="06q35faqrcarx6n00i5s45ynpwi6n6xizyr8w9c436c4ahg0xvyh"; depends=[]; }; stokes = derive2 { name="stokes"; version="1.1-1"; sha256="1hykdsmslvwbhm75k7q1l2xmr0dhldvq08np64gm8rgbfy4p4vpg"; depends=[disordR mathjaxr partitions permutations spray]; }; + stoppingrule = derive2 { name="stoppingrule"; version="0.1.0"; sha256="045z4bfvqkf62bmm4zaifl34hbcd191jv77s8ddbv1a7nqc52ds1"; depends=[]; }; stopwords = derive2 { name="stopwords"; version="2.3"; sha256="1ci1cgxrcvlhhplximsfv0plvjdbcd5kv0nphxnpildsn5m1rv65"; depends=[ISOcodes]; }; storr = derive2 { name="storr"; version="1.2.5"; sha256="0qszdq16bf0dbss33zi63ciwmkgjsyc0c3akrr2kl14w3ncw6922"; depends=[digest R6]; }; storywranglr = derive2 { name="storywranglr"; version="0.2.0"; sha256="07w3dwv2naqbbdzjcv58cisj7cv1rbhrk96a30q8ww11rf953rj4"; depends=[dplyr httr jsonlite tibble urltools]; }; stosim = derive2 { name="stosim"; version="0.0.14"; sha256="10k8j7manskjsrjc1l44yhy682b1qh0k2jx3cs5k69j2z42mnhmk"; depends=[Rcpp]; }; - stplanr = derive2 { name="stplanr"; version="0.8.7"; sha256="11a0cak6vf5snfpbbv0rbhcjryyd694d6vz1gyshxzwi6wgglhq0"; depends=[curl data_table dplyr geosphere httr jsonlite lwgeom magrittr maptools nabor pbapply raster Rcpp RcppArmadillo rgeos rlang sf sfheaders sp stringr]; }; - stpm = derive2 { name="stpm"; version="1.7.10"; sha256="0y9rpqjn33gdqjvag4kb6dr00w80paspgj9ic25brclfv1zmzbhf"; depends=[MASS nloptr Rcpp RcppArmadillo sas7bdat survival]; }; + stplanr = derive2 { name="stplanr"; version="0.9.0"; sha256="0zd3sd5pwz74626rxhzgyjjrc5y5hdhn9d8hqwqykn6wa7xwbabq"; depends=[curl data_table dplyr geosphere httr jsonlite lwgeom magrittr maptools nabor pbapply raster Rcpp RcppArmadillo rgeos rlang sf sfheaders sp stringr]; }; stpp = derive2 { name="stpp"; version="2.0-6"; sha256="0ii799kqn8ydgi4bqs292fff7my5fdbrvwnizqphbk7k8xf4w5vx"; depends=[ggplot2 gridExtra KernSmooth plot3D rgl rpanel spatstat_core spatstat_geom spatstat_random splancs]; }; stppSim = derive2 { name="stppSim"; version="1.2.3"; sha256="188vdx21sbss5v9941f03n93am3qq6mavq51vwshcm5ncdddhmmg"; depends=[chron cowplot data_table dplyr geosphere ggplot2 gstat ks leaflet lubridate magrittr raster rgdal sf SiMRiv sp sparr spatstat_geom splancs stringr terra tibble tidyr]; }; str2str = derive2 { name="str2str"; version="0.2.1"; sha256="180m261hr0qr3mnm8hbvjbw3q44cr1kfrnq97fvkpypigdycd9z4"; depends=[abind checkmate plyr reshape]; }; @@ -17418,7 +17032,7 @@ in with self; { strap = derive2 { name="strap"; version="1.4"; sha256="0gdvx02w0dv1cq9bb2yvap00lsssklfnqw0mwsgblcy2j6fln7b0"; depends=[ape geoscale]; }; strat = derive2 { name="strat"; version="0.1"; sha256="1axxrp750kjzcgxjdqfscjmryv1mkv4l23zk8k23z8l4ymhd2f5w"; depends=[Hmisc Rcpp RcppArmadillo]; }; stratEst = derive2 { name="stratEst"; version="1.1.4"; sha256="1g764h17sh499p0a5ixs61q8l1hssvi7v4c34i90rdf81l72i0mg"; depends=[Rcpp RcppArmadillo]; }; - stratallo = derive2 { name="stratallo"; version="0.1.0"; sha256="0i8vqhf70x25p9z8amka2aaij7r28d83sp0nijim4n225bdfj6sk"; depends=[]; }; + stratallo = derive2 { name="stratallo"; version="2.0.1"; sha256="14fnk7dk1kv5rfb95al7anmj392wrd9aipsjdgi8w9p5dlsapvj8"; depends=[checkmate lifecycle]; }; stratamatch = derive2 { name="stratamatch"; version="0.1.9"; sha256="1z395355kac0wd4f0m1ijh851m046ra8h1wam04if4qp00ychajp"; depends=[dplyr Hmisc magrittr rlang survival]; }; stratbr = derive2 { name="stratbr"; version="1.2"; sha256="15vkymmc61yz9szhfhc5663hfyqvh499ahwhr9mv1lhv5bikk0kb"; depends=[Rglpk snowfall stratification]; }; strategicplayers = derive2 { name="strategicplayers"; version="1.0"; sha256="19vijrlzawd701vvk9ig7yhzbirh39dxxcwfz8ywwvxxiaky5x55"; depends=[sna]; }; @@ -17428,9 +17042,9 @@ in with self; { straweib = derive2 { name="straweib"; version="1.1"; sha256="0hi59p580yg6rj72grq4jx6grv7lmpi2cimp0rbxhkjpj6i1hav9"; depends=[]; }; strawr = derive2 { name="strawr"; version="0.0.9"; sha256="1g85hxq3f28di0787ww4d0ai3znsp9d96sp8bwiygs6ff9jx4wkz"; depends=[Rcpp]; }; stray = derive2 { name="stray"; version="0.1.1"; sha256="1pjw1bdkqsp085lrwca1psma95ncapfz8a5iampxgghydkhh3dm8"; depends=[colorspace FNN ggplot2 ks pcaPP]; }; - stream = derive2 { name="stream"; version="1.5-0"; sha256="1aa9jbqq3nsn511qxcc4gshz04bz7idai2vhz0prvc2lwm4ypvqy"; depends=[BH clue cluster clusterGeneration dbscan fpc MASS mlbench proxy Rcpp registry]; }; + stream = derive2 { name="stream"; version="1.5-1"; sha256="1pmw3zyj8rzqkqqrwbvs8r4kpw84mh3q1r4m2rlp5l9p1nb6d59c"; depends=[BH clue cluster clusterGeneration dbscan fpc MASS mlbench proxy Rcpp]; }; streamDepletr = derive2 { name="streamDepletr"; version="0.1.1"; sha256="0x7663xz9az8lq852923hr7chaif1iml8drb6ljg83rg55plmwir"; depends=[dplyr magrittr Rmpfr sp]; }; - streamMOA = derive2 { name="streamMOA"; version="1.2-3"; sha256="1rh9xplmmwg60v19c7qfjs9w0cv4n9wvcn3narqqq4ky4m7g1ask"; depends=[rJava stream]; }; + streamMOA = derive2 { name="streamMOA"; version="1.2-4"; sha256="060qi9jammlbiwwazpzdpd7lb73yb9gf38mbwqd8pn2hna7av2ix"; depends=[rJava stream]; }; streamR = derive2 { name="streamR"; version="0.4.5"; sha256="1clx3b0j2515r1nmnl6ki7qw5n54q3x2jvqv3zrc00kq71mlj7ix"; depends=[ndjson RCurl rjson]; }; streambugs = derive2 { name="streambugs"; version="1.2"; sha256="1363w0sf7lahcg3dhvl6l7hybgr71r21xbxs718a73zy5pnwm4s2"; depends=[deSolve]; }; stressaddition = derive2 { name="stressaddition"; version="3.1.0"; sha256="14ggy4ka9kll723jdir22g5l5xkwdckvd08gg6rxsmxryhznqd4a"; depends=[drc plotrix]; }; @@ -17440,7 +17054,7 @@ in with self; { string2path = derive2 { name="string2path"; version="0.0.4"; sha256="1vxrl60ld7iy9fhy4jz954n9ywq6g0glm2wci9262c827jwd8pyb"; depends=[tibble]; }; stringb = derive2 { name="stringb"; version="0.1.17"; sha256="0bfwwbg64nzxrx30cndqvdlhanjkx6875lg5dzm9cbwvwg2wbxcn"; depends=[backports]; }; stringdist = derive2 { name="stringdist"; version="0.9.8"; sha256="1fv1hbdlm8qwx57b2aj50mw0say5k48awzavx65mfk67qp6ddk7g"; depends=[]; }; - stringfish = derive2 { name="stringfish"; version="0.15.5"; sha256="0ac17wl0fcpmipbvhhg5nyccg055671fnlxvnjd5l3kilx313wlx"; depends=[Rcpp RcppParallel]; }; + stringfish = derive2 { name="stringfish"; version="0.15.7"; sha256="0ddpsi7z0kzqgbq9y646pk9afclq0r7ak22zsdh0i93ni0x71c9l"; depends=[Rcpp RcppParallel]; }; stringformattr = derive2 { name="stringformattr"; version="0.1.2"; sha256="0x56k30clj5ajk0qg5sr8b9l0asz6ldivwr1ddy1vp1djliih1fx"; depends=[stringr]; }; stringi = derive2 { name="stringi"; version="1.7.6"; sha256="1v0rj5svgvn1mlf69yzm6jm00fxmrsxazs9xymzrf0apxjpxb8qf"; depends=[]; }; stringr = derive2 { name="stringr"; version="1.4.0"; sha256="1p9ip7p87gbbg4s6d3d392svvzz2b5dqdq2c8ilgvn4s78nlsq47"; depends=[glue magrittr stringi]; }; @@ -17455,7 +17069,6 @@ in with self; { strvalidator = derive2 { name="strvalidator"; version="2.3.0"; sha256="0m1nxpvb7hbx9n00mc0ar7ay1sk8h819cmf0r0g323z23axq1kdx"; depends=[data_table ggplot2 gridExtra gtable gWidgets2 MASS plyr scales]; }; stsm = derive2 { name="stsm"; version="1.9"; sha256="18ypmkd7l7m7qkahb0nqf8f1m8g4irxlw48v2ms0dq1bsnhbzx7j"; depends=[KFKSDS]; }; stuart = derive2 { name="stuart"; version="0.9.1"; sha256="1y58kxlcq4zynyb6fnpdv3ik9gza83kyaz73w033snhmj9dqihfm"; depends=[]; }; - stubthat = derive2 { name="stubthat"; version="1.2.1"; sha256="130naxzvswcyadwcgldvwnxxdxbfwx5vljac7901vn3ahjp75d8z"; depends=[testthat]; }; studentlife = derive2 { name="studentlife"; version="1.1.0"; sha256="1xvlcwg7ckxsm5hb5ax8r3hzdqnx61ax59ini5xc5jrsmir13g67"; depends=[crayon dplyr ggplot2 jsonlite purrr R_utils readr skimr tibble tidyr visdat]; }; studyStrap = derive2 { name="studyStrap"; version="1.0.0"; sha256="0lvzqnq40j0xn74qrj0pqhr8zz34mbhfd7dg8bnadscsvj5ffm4c"; depends=[caret CCA dplyr MatrixCorrelation nnls pls tibble tidyverse]; }; styler = derive2 { name="styler"; version="1.7.0"; sha256="1ki260ga0jrmayhdlx2sl788yp5kkmi4wyl32nmvvyb55sng6j9y"; depends=[cli magrittr purrr R_cache rematch2 rlang rprojroot tibble withr]; }; @@ -17468,19 +17081,18 @@ in with self; { subgroup = derive2 { name="subgroup"; version="1.1"; sha256="1n3qw7vih1rngmp4fwjbs050ngby840frj28i8x7d7aa52ha2syf"; depends=[]; }; subgxe = derive2 { name="subgxe"; version="0.9.0"; sha256="0faww87ncylqixb640hc2axvn4i50d2r2ggngmd7s9wazbb6sd55"; depends=[]; }; submax = derive2 { name="submax"; version="1.1.1"; sha256="0b9x55gqzw20smr3hx9izvyr0i8zv0h03hadn4c7ks7w8ga5i0kj"; depends=[mvtnorm sensitivityfull]; }; - subniche = derive2 { name="subniche"; version="1.4"; sha256="10j7wz4hyqvpi7iqq7m6jb13g0wr7k59rkxyyhfkmcq1vgm2cpdx"; depends=[ade4 polyclip siar wordcloud]; }; - subplex = derive2 { name="subplex"; version="1.7"; sha256="11zqzydbj6ivgvlw1gv1r2yxra7misbc622g575p2vckhjjg9v6m"; depends=[]; }; + subplex = derive2 { name="subplex"; version="1.8"; sha256="19g5bd39gmcn27xdsklkzxg99x1r5v5q8zcw1iwry31qj24ivhrv"; depends=[]; }; subrank = derive2 { name="subrank"; version="0.9.9.1"; sha256="19lgw7248jq6b34i17c7vw208wsvmppni7njswd02i9xdgyjn95z"; depends=[]; }; subsamp = derive2 { name="subsamp"; version="0.1.0"; sha256="1bfz2z2qy1war3id8qr1asygwvwxgf2hhlh075hr6bjdkxz0j0nd"; depends=[]; }; - subscore = derive2 { name="subscore"; version="3.1"; sha256="1hb4ci62hxffz09sz0i27jfw7xn0pca87kiq6damz5zi418csa4v"; depends=[boot cocor CTT irtoys ltm sirt]; }; + subscreen = derive2 { name="subscreen"; version="3.0.7"; sha256="0vxwyx08bjha7vgv3lcgigar43f74fr3w7wna6z8viawh3bc7k96"; depends=[bsplus colourpicker data_table dplyr DT jsonlite plyr purrr ranger shiny shinyjs shinyWidgets]; }; subselect = derive2 { name="subselect"; version="0.15.2"; sha256="0ggpm5bq4ncx4302855s8x1nj0afjizmi81cg6b7xc7rvpirw0fq"; depends=[corpcor ISwR MASS]; }; subsemble = derive2 { name="subsemble"; version="0.1.0"; sha256="125msb0krcdj6jbdvzdl75179ajakb1l0xal45bp38am8w62a6zz"; depends=[SuperLearner]; }; subspace = derive2 { name="subspace"; version="1.0.4"; sha256="0p2j0lnwj3ym1v4xla6r97zjikb8alnibdc690xn9c0z21hmv43v"; depends=[colorspace ggvis rJava stringr]; }; subtee = derive2 { name="subtee"; version="1.0.1"; sha256="090k3p1j9fj7qk121qb488vzfgzxnvqp7z60jhcyy8l47aazf5g0"; depends=[ggplot2 httr MASS matrixStats survival]; }; - subtype = derive2 { name="subtype"; version="1.0"; sha256="1094q46j0njkkqv09slliclp3jf8hkg4147hmisggy433xwd19xh"; depends=[penalized ROCR]; }; + success = derive2 { name="success"; version="0.1.0"; sha256="1kb2yh7wkh2z5939zxfp73bas2m44bmiq642z6plzgv9lcqszq1n"; depends=[ggplot2 pbapply plotly RColorBrewer survival]; }; sudachir = derive2 { name="sudachir"; version="0.1.0"; sha256="09ry00c3yhrz8fiyxdxgj9r3x7kldsl6fv35mmi5ysc2549kbcfb"; depends=[cli dplyr glue magrittr purrr reticulate rlang tibble tidyselect]; }; suddengains = derive2 { name="suddengains"; version="0.4.4"; sha256="160jna9imnpy91f6pa881w6wlrwy59db0nijrn1sf5ym1cmh5gz5"; depends=[dplyr forcats ggplot2 ggrepel magrittr naniar patchwork psych readr rlang scales stringr tibble tidyr]; }; - sudoku = derive2 { name="sudoku"; version="2.6"; sha256="13j7m06m38s654wn75kbbrin5nqda4faiawlsharxgrljcibcbrk"; depends=[]; }; + sudoku = derive2 { name="sudoku"; version="2.8"; sha256="1z130cx30wdqch0a4f27aa9v3v29hx6d5zav308abx42s4ilysbs"; depends=[]; }; sudokuAlt = derive2 { name="sudokuAlt"; version="0.2-1"; sha256="1y3li64xqag2ia8dg7q49jmlb1awl92rz6xa9zsbf0s9jman9wj9"; depends=[magrittr]; }; sugarbag = derive2 { name="sugarbag"; version="0.1.3"; sha256="05j2b9vbhpkfr3xkam9wgm0w4k8blnm1ssf9cd6l5f1y2rrqizsv"; depends=[dplyr geosphere lwgeom progress purrr rlang rmapshaper sf tibble tidyr utf8]; }; sugrrants = derive2 { name="sugrrants"; version="0.2.8"; sha256="08cs74afpkvjh32hlrwbl8sdsi3p0ga4ziw32r9pihs28a060fam"; depends=[dplyr ggplot2 gtable lubridate rlang]; }; @@ -17495,25 +17107,22 @@ in with self; { supc = derive2 { name="supc"; version="0.2.6.2"; sha256="0gvrmhvjkfbgi0ivwa8ri69rxj4kqn3xqrc2d5rfrdfm9jmqb56h"; depends=[BH Rcpp]; }; supclust = derive2 { name="supclust"; version="1.1-1"; sha256="1iar957gdarp1m677fjmph0ll8zsqiy2bzkzx03gv37k56w1acpd"; depends=[class rpart]; }; supcluster = derive2 { name="supcluster"; version="1.0"; sha256="1rkd4bpzzvzbmqaj907pqv53hxcgic0jklbsf5iayf0ra768b5w6"; depends=[gtools mvtnorm]; }; - superMDS = derive2 { name="superMDS"; version="1.0.2"; sha256="0jxbwm3izk7bc3bd01ygisn6ihnapg9k5lr6nbkr96d3blpikk04"; depends=[]; }; - superMICE = derive2 { name="superMICE"; version="1.0.1"; sha256="007qw2ff0mnvwcmi7i1x1gpd54l1zxaqjsw9q55bfshm43zs49mj"; depends=[mice SuperLearner]; }; - superb = derive2 { name="superb"; version="0.9.7.8"; sha256="0szx5xrqfgganmgbqbdinaq9rljnl8b6l6ym56ysfjq0v6az2s8a"; depends=[foreign ggplot2 lsr MASS plyr psych Rdpack shiny shinyBS stringr]; }; + superMICE = derive2 { name="superMICE"; version="1.1.1"; sha256="0wf043vyd89a5jdvm128rqmfrnm9c0lhir35jyzy20rm75aqqh1w"; depends=[mice SuperLearner]; }; + superb = derive2 { name="superb"; version="0.95.0"; sha256="0xr83q8yqbiym98116q9j1mp46adlmjj4s6pcn634w1yqvjfxdsf"; depends=[foreign ggplot2 lsr MASS plyr Rdpack shiny shinyBS stringr]; }; superbiclust = derive2 { name="superbiclust"; version="1.2"; sha256="0mk3d820skp99hl8ilwic2fz90yb9dwy2jq3vfjb726gj1qich3b"; depends=[biclust fabia Matrix]; }; supercells = derive2 { name="supercells"; version="0.8.2"; sha256="1qr990f4i8v9mahysadbdy5z692fbf7r4j3vcc707qqhhvwijris"; depends=[cpp11 future_apply philentropy sf terra]; }; supercompress = derive2 { name="supercompress"; version="1.1"; sha256="1kz04m37r1g4lx4y0kzjn77p3wra2rq21y93v9llikycsh6vzwp1"; depends=[FNN]; }; superdiag = derive2 { name="superdiag"; version="2.0"; sha256="0zfy9ain6agh276av0p66mks3rap42n8yma0dr6qbc14z3nh8w0m"; depends=[coda]; }; superheat = derive2 { name="superheat"; version="0.1.0"; sha256="01v8s6px1k5fajlm6py3ksr1i853kwwlky1yryzhy3p1cxhwgg83"; depends=[dplyr ggdendro ggplot2 gtable magrittr plyr scales]; }; - superml = derive2 { name="superml"; version="0.5.3"; sha256="1k0hcjspv0q6wg0yarvgjs7ql7d587nijicmz3lfhpph2n3hghvb"; depends=[assertthat BH data_table Metrics R6 Rcpp RcppArmadillo]; }; + superml = derive2 { name="superml"; version="0.5.4"; sha256="1rn5jp60nbwspfrsmywwrczpji6xjdk5ililphg0v3wr73pswsmv"; depends=[assertthat BH data_table Metrics R6 Rcpp RcppArmadillo]; }; supernova = derive2 { name="supernova"; version="2.5.1"; sha256="12qkrgcv5wyw2278hzl75irc9n67dd89xcjj1vr6y9x2bdk7qmnj"; depends=[backports cli ggplot2 lifecycle magrittr pillar purrr rlang stringr tibble vctrs withr]; }; superpc = derive2 { name="superpc"; version="1.12"; sha256="0n68qafsww00q0wx37ms3rimrlhbp085ywvv2k5vw951j4z8ivfb"; depends=[survival]; }; supervisedPRIM = derive2 { name="supervisedPRIM"; version="2.0.0"; sha256="1j5gsy119pvrhkkg048lyk6hjvn9x1bhmfy5g824gj3k1w5slrib"; depends=[prim]; }; suppdata = derive2 { name="suppdata"; version="1.1-8"; sha256="0npbr1zvn30vh6qccyxld2xzdflh6armj6d807d9qbkjqd81kkyn"; depends=[httr jsonlite rcrossref xml2]; }; - support = derive2 { name="support"; version="0.1.5"; sha256="0gs6mva1lwanq4rm8l70sid28if2l0k249ydirqkz72lz12hg1br"; depends=[BH MHadaptive nloptr randtoolbox Rcpp RcppArmadillo]; }; support_BWS = derive2 { name="support.BWS"; version="0.4-4"; sha256="0w4d4hiv46bsj9hl600y0n8n54cisagnim6ym2g8yipbvvsfqxlh"; depends=[]; }; support_BWS2 = derive2 { name="support.BWS2"; version="0.3-1"; sha256="15m4aim384ivrw53qhglv782c6bcp1sfh1i94d9i308q4iqaaa2v"; depends=[]; }; support_BWS3 = derive2 { name="support.BWS3"; version="0.2-0"; sha256="012kcvscz7m2is92r71731zc7xnp7pwyx30vivwjazrigp9bq1kl"; depends=[]; }; support_CEs = derive2 { name="support.CEs"; version="0.5-0"; sha256="194vnld2rg5qcp6vmcx259icj7gl1kyrivh8v8hygy9fy6dp16wc"; depends=[DoE_base MASS simex]; }; - supportInt = derive2 { name="supportInt"; version="1.1"; sha256="14fh75sds05c06xkcfbijd8my3sa9kpnczzh96xx0gwj1193yya9"; depends=[ProfileLikelihood]; }; supreme = derive2 { name="supreme"; version="1.1.0"; sha256="0y5kd911f7h754ppdpw94qw3r8vzz3yhyj5b99h3h96iifydlik6"; depends=[nomnoml shiny yaml]; }; sur = derive2 { name="sur"; version="1.0.4"; sha256="0rp5pwx3m6nzcy73wzmxpsxp9pc7swj2w5b82m0zdxq5kv9hsjsl"; depends=[learnr]; }; surbayes = derive2 { name="surbayes"; version="0.1.2"; sha256="0n01g84cwq5aj4qafk1zf60ka7s9z3q2gkgzp5xw9dx5lgfh7dgb"; depends=[Matrix Rcpp RcppArmadillo rlist]; }; @@ -17531,7 +17140,7 @@ in with self; { survCurve = derive2 { name="survCurve"; version="1.0"; sha256="0zspyxzn99ljiqp1111202714rqs4vg6j2rv66qv8ilxajvdxxas"; depends=[survival]; }; survELtest = derive2 { name="survELtest"; version="2.0.1"; sha256="03jnj88z45iw9v1628bz99608q2jwbqw6cfsvqal2jj4392fz428"; depends=[Iso nloptr plyr survival]; }; survHE = derive2 { name="survHE"; version="1.1.2"; sha256="17hdhwkzyrkk4ijyscnv9644iinxvc566n84zq2490hfvlsk6nql"; depends=[BH dplyr flexsurv ggplot2 Rcpp RcppEigen rms rstan StanHeaders tibble xlsx]; }; - survIDINRI = derive2 { name="survIDINRI"; version="1.1-1"; sha256="03lsypx189zm28gv764gdq24a18jj3kpdk91ssa501qxj5jv7v29"; depends=[survC1 survival]; }; + survIDINRI = derive2 { name="survIDINRI"; version="1.1-2"; sha256="1cl2dlxya3aqhmj7gwk5s5wfdrk5in8if04hm0bjg4ivcrw4m9r6"; depends=[survC1 survival]; }; survJamda = derive2 { name="survJamda"; version="1.1.4"; sha256="14ly1g548ysm8jgsyrhj12zmd6i2lca7rsgby3jbwikyqyk1mx5q"; depends=[ecodist survcomp survival survivalROC survJamda_data]; }; survJamda_data = derive2 { name="survJamda.data"; version="1.0.2"; sha256="0a010v2ar48i5m0jiqjvdyqm93ckfgfmcmym9a02h0rclnizd75r"; depends=[]; }; survMS = derive2 { name="survMS"; version="0.0.1"; sha256="0313pwf0l6wq9l4qjj1al9ybzm79kdxwzdrw6k0af706rxfzzha0"; depends=[ggplot2]; }; @@ -17547,7 +17156,7 @@ in with self; { survSpearman = derive2 { name="survSpearman"; version="1.0.0"; sha256="06xric3fwv2rdrbapsawrg288s2sflzrbx1a4yc7lzxzxbsbs619"; depends=[]; }; surveil = derive2 { name="surveil"; version="0.2.0"; sha256="0lnib5ds8s34klgps4kn367hl6bwv4gz5py9l3difz43wwhk78j1"; depends=[BH dplyr ggdist ggplot2 gridExtra Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tidybayes tidyr]; }; surveillance = derive2 { name="surveillance"; version="1.20.0"; sha256="0dbqr43fhg5zdh6wzw6licq6c5qqab710gw5ag45l8j1z3q06x8i"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat_geom xtable]; }; - survexp_fr = derive2 { name="survexp.fr"; version="1.0"; sha256="12rjpnih0xld4dg5gl7gwxdxmrdmyzsymm7j05v98ynldd1jkjl8"; depends=[survival]; }; + survexp_fr = derive2 { name="survexp.fr"; version="1.1"; sha256="0ci65w3w06kwab98q9gb7nb7smq9r25qfibkgfilsg1i5li6p9h5"; depends=[survival WriteXLS]; }; survey = derive2 { name="survey"; version="4.1-1"; sha256="0ljsszybzri531q6xab04r6zq11vchfs7y0snjzk57m3g0b9ms05"; depends=[lattice Matrix minqa mitools numDeriv survival]; }; surveyCV = derive2 { name="surveyCV"; version="0.2.0"; sha256="183ybmfin4xmpsmssw7hskj1rgwpabpa616bzxlir27kygyrswbz"; depends=[magrittr survey]; }; surveybootstrap = derive2 { name="surveybootstrap"; version="0.0.1"; sha256="13rp6gj1dgdzcjbi2403pldygp1dyqx8zj0r1nvyghpi06x5gpb7"; depends=[dplyr functional plyr Rcpp RcppArmadillo stringr]; }; @@ -17567,22 +17176,22 @@ in with self; { survivalROC = derive2 { name="survivalROC"; version="1.0.3"; sha256="0wnd65ff5w679hxa1zrpfrx9qg47q21pjxppsga6m3h4iq1yfj8l"; depends=[]; }; survivalmodels = derive2 { name="survivalmodels"; version="0.1.13"; sha256="0d5bfmvfwf3i1iim5cjrqq5vlja92znpzv1csrk488rb582zaza7"; depends=[Rcpp]; }; survivalsvm = derive2 { name="survivalsvm"; version="0.0.5"; sha256="1b4hrdrqq1z0kfn8vpdwg54388m25df2s6w9i574x3mkxkmkjkga"; depends=[Hmisc kernlab Matrix pracma quadprog survival]; }; - survivoR = derive2 { name="survivoR"; version="0.9.12"; sha256="0mda9zjag453m60c2njzjpifz88q09vjkys0xds8vsdzmi70vjvv"; depends=[dplyr ggplot2 magrittr stringr tidyr]; }; + survivoR = derive2 { name="survivoR"; version="1.0"; sha256="13q9qirsramzzrwbx5kchlkdlcr65q9292xzxz4g01s7y803v6i3"; depends=[dplyr ggplot2 magrittr stringr tidyr]; }; survminer = derive2 { name="survminer"; version="0.4.9"; sha256="0byh0wxdbjfwdrzsnqv4xlmnik6lj0vkkzfxy7lssk8dv5zmj7nz"; depends=[broom dplyr ggplot2 ggpubr ggtext gridExtra magrittr maxstat purrr rlang scales survival survMisc tibble tidyr]; }; survmixer = derive2 { name="survmixer"; version="1.3"; sha256="00s06h7nn8li4d2kn4yzlnj3px1wkpvnx5w73y98cvrcwm0ad71g"; depends=[]; }; survsim = derive2 { name="survsim"; version="1.1.8"; sha256="0gv54bd94a6vdz8li0j409qv7r0h4d681l1p9hj9ilzk7y5bfm70"; depends=[eha statmod]; }; survtmle = derive2 { name="survtmle"; version="1.1.1"; sha256="1l13rvwq4915ij2a55fxdj3b3wkgjca1fbqzcgkjlpzkcn97k1nj"; depends=[dplyr ggplot2 ggsci Matrix plyr speedglm stringr SuperLearner tidyr]; }; susieR = derive2 { name="susieR"; version="0.11.92"; sha256="1wlw41vslbgf6dmppn2hv2mqrnnza5091qzjl0qjaydsp97h5b3b"; depends=[crayon ggplot2 Matrix matrixStats mixsqp reshape]; }; sutteForecastR = derive2 { name="sutteForecastR"; version="0.1"; sha256="13dd0v3l3s7xb1wnpf6qvnvclzab87831z8bsxsq53vpb26xcw1b"; depends=[forecast forecastHybrid fracdiff robets]; }; - svDialogs = derive2 { name="svDialogs"; version="1.0.3"; sha256="0j00xjvkwv992ir48czhvyj29rb9vpd243vbyyj2binn0q0qa431"; depends=[rstudioapi svGUI]; }; - svDialogstcltk = derive2 { name="svDialogstcltk"; version="0.9-4"; sha256="16166f8i6nsg7palqmnlp5b9s91d6ja9n0zm6rcvd2fwnw2ljkr4"; depends=[svDialogs svGUI]; }; + svDialogs = derive2 { name="svDialogs"; version="1.1.0"; sha256="0z3a5glsi0ab43mdk2yvslxyzg12nbqqqc35jvgzj475mpkbgjif"; depends=[rstudioapi svGUI]; }; + svDialogstcltk = derive2 { name="svDialogstcltk"; version="1.0.0"; sha256="03rxw1m1ixisj0z9csmn3xff3rl1wqdvkcl1x7kmx64d0x6jwyfy"; depends=[svDialogs svGUI]; }; svGUI = derive2 { name="svGUI"; version="1.0.1"; sha256="0ch5gdfk834xj9w3vxpm3x4770fz3nnlyn8b0jsw9f3n2as7g979"; depends=[]; }; - svHttp = derive2 { name="svHttp"; version="0.9-55"; sha256="0qxsh6ifk3fszgzz497qwia4pxzplwraf2qnn5cqlv5l79nja5yq"; depends=[svMisc]; }; + svHttp = derive2 { name="svHttp"; version="1.0.4"; sha256="1j0lb2fy8hp63g6zyryk9w50fzgxa5gjh0g0f9dc2z6i4n3fqfsh"; depends=[svMisc]; }; svIDE = derive2 { name="svIDE"; version="0.9-54"; sha256="1a03xpjx22xhxfqkgcm1pmal0dlp544hvnckj0p6sy4y56hmsfik"; depends=[svMisc XML]; }; - svKomodo = derive2 { name="svKomodo"; version="0.9-63"; sha256="0x2774lhckhg8kw6plsn6dpks3b3fisb0psa03p7di7jx8vrkg5n"; depends=[svMisc]; }; + svKomodo = derive2 { name="svKomodo"; version="1.0.0"; sha256="0h5p1c6wfyvnygd5cwxvwd8qgs9svd70cyr7sqm41zy3d70mavds"; depends=[svMisc]; }; svMisc = derive2 { name="svMisc"; version="1.2.3"; sha256="1r3kih5bnr4plnzdn5f2gg3xl3krgyl7gkdlf58a2l8vk13j3m9d"; depends=[]; }; - svSocket = derive2 { name="svSocket"; version="1.0.2"; sha256="1gzh1a64cg4mrjmdn4s35kl1fmhbaykk26lfmykqfhb10ldzr7qj"; depends=[svMisc]; }; - svSweave = derive2 { name="svSweave"; version="0.9-8"; sha256="0zkng8lwdpjdbic9f6jnk2ndxbch2kjyz71ds1bksvd3kmk03lks"; depends=[knitr]; }; + svSocket = derive2 { name="svSocket"; version="1.1.0"; sha256="0wqy5y8rgacvj8va4cqa55c3bf2c80ksba32nckmkyhmqpdvznyg"; depends=[svMisc]; }; + svSweave = derive2 { name="svSweave"; version="1.0.0"; sha256="00w5ykqcx7zzx95pjih16w4rz4fcg6fbq57i0bj0rvbbw9dp3nz7"; depends=[knitr rmarkdown]; }; svTools = derive2 { name="svTools"; version="0.9-5"; sha256="040wr8cr2p35x6pr515bprmsw8ysajx4df5f2njz3ily61xf9szi"; depends=[codetools svMisc]; }; svUnit = derive2 { name="svUnit"; version="1.0.6"; sha256="08nmlbdrmmz04ira30721l99i74w07w2avdr4pypswf2sq1nqgi6"; depends=[]; }; svWidgets = derive2 { name="svWidgets"; version="0.9-45"; sha256="08cpsy4abypjnv33arsgxk5i0gpdvdzj60wa1b22ca1n7d35mc80"; depends=[svMisc]; }; @@ -17594,14 +17203,16 @@ in with self; { svgViewR = derive2 { name="svgViewR"; version="1.4.1"; sha256="0xppvrfl7q3viahvwvmn498wli74ldwijapf6n432gvc4phmy7wi"; depends=[Rcpp rjson Rook]; }; svglite = derive2 { name="svglite"; version="2.1.0"; sha256="16wwhfmp9agdz9azslgd8qs77fllhdp6p0m304qfh2p8qy8gah5d"; depends=[cpp11 systemfonts]; }; svgtools = derive2 { name="svgtools"; version="1.1.0"; sha256="1ipwj3qw8c62381b6yf5mazhg2a3ssddijqrq3bac57i8i6m8az1"; depends=[magick rsvg stringr xml2]; }; + svines = derive2 { name="svines"; version="0.1.4"; sha256="1piin3nn0z5k9gilcq4lcqj86dqlfm9xqp87cslwypkfkkhn2aia"; depends=[assertthat BH fGarch Rcpp RcppEigen RcppThread rvinecopulib univariateML wdm]; }; svmpath = derive2 { name="svmpath"; version="0.970"; sha256="19b5hfqqsh072l5mbkafm5pjd6qhyj20qd2vq6zl5jjmc45r72w1"; depends=[kernlab]; }; svmplus = derive2 { name="svmplus"; version="1.0.1"; sha256="08cfywrbaxyacqd3l75lysb23ahqbs80959iqkjbb125aafmhvni"; depends=[MASS Matrix quadprog]; }; svplots = derive2 { name="svplots"; version="0.1.0"; sha256="0fa3mnsdaz85dy7rr6w454z516simj1zrf08sfbm05rp6jr3c7ws"; depends=[ggplot2]; }; - svrep = derive2 { name="svrep"; version="0.1.0"; sha256="0v15c57lkriqg50iyiwmmv47fw1q9kf1fswcmsff5d95x3zgydhh"; depends=[survey]; }; + svrep = derive2 { name="svrep"; version="0.2.0"; sha256="1cgf0ayqnfrjxy28p0nfkhs69gf7ckdp1vgcrjiby2qnfs9y1jh7"; depends=[survey]; }; svrpath = derive2 { name="svrpath"; version="0.1.2"; sha256="18h40555jmqpbsnhlwkvc5fl7d0r2bgscdv8amjvhjxmx9y952a2"; depends=[quadprog svmpath]; }; svs = derive2 { name="svs"; version="3.0.0"; sha256="1jn3dbaqpgydkwf9y7hq97nva26vvrpl9zmw2bw4ky1qgzgz1ypb"; depends=[gtools Matrix]; }; svyVGAM = derive2 { name="svyVGAM"; version="1.0"; sha256="1dq6rmk3sqpgm7q1chsvwjhc2lfsrgd4isgpxc907w5waqk91n16"; depends=[survey VGAM]; }; - svydiags = derive2 { name="svydiags"; version="0.3"; sha256="0xgizswdqs8cjac200sqv3ygvrnbcy74h92kgx4r6nv1fhlcljl3"; depends=[MASS Matrix survey]; }; + svydiags = derive2 { name="svydiags"; version="0.4"; sha256="0fk990iqhf3c5dda0fkspjsnrxam1bam4h9wlpvwilb2j4c39vs8"; depends=[MASS Matrix survey]; }; + svyweight = derive2 { name="svyweight"; version="0.1.0"; sha256="1pg22gc8798dn9r8gphzlagryybb8gv6l18x650wq82mirnvgl6h"; depends=[gdata survey]; }; swCRTdesign = derive2 { name="swCRTdesign"; version="3.1"; sha256="18ln02fnxkpjqi8a36wr2qr427hxrghkhfjx0384grmdg1mmkbf5"; depends=[]; }; swa = derive2 { name="swa"; version="0.8.1"; sha256="1zy1a6c17vmdkmkwp8vv3niww2zs1m0hylsa0b2cz68vfhnmpim4"; depends=[ggplot2 reshape ROCR]; }; swag = derive2 { name="swag"; version="0.1.0"; sha256="1w6schbj5gw7278krjzkcwafz3wv7vp7cfsvy17c0i1b5g3qqkpd"; depends=[caret Rdpack]; }; @@ -17610,13 +17221,13 @@ in with self; { swatches = derive2 { name="swatches"; version="0.5.0"; sha256="1kivscgka8gn44rjj0s5sjan1s04znnyn0nd37a74zaik0hm8zs0"; depends=[colorspace httr pack stringr xml2]; }; swdft = derive2 { name="swdft"; version="1.0.0"; sha256="0529rw8nsl48hwiy741alvrzg5d5q1nhnjshrsfwchm5kdv0igva"; depends=[]; }; swdpwr = derive2 { name="swdpwr"; version="1.7"; sha256="0mljayrs629d0pxbd9lzzplvs31i33fqb0bfb01ryvwyv0ckwjx9"; depends=[spatstat_random]; }; - sweater = derive2 { name="sweater"; version="0.1.4"; sha256="1il3jmcawzy4pjdv0vhril37y5wqlczr0sapsnqgrmcc4szbsba9"; depends=[cli data_table LiblineaR proxy purrr quanteda Rcpp]; }; + sweater = derive2 { name="sweater"; version="0.1.6"; sha256="0ij9mryxl9cjl4yxycn8yxp1qvj5s897h3ay5zz6j4cnpm65s7hv"; depends=[cli combinat data_table LiblineaR proxy purrr quanteda Rcpp]; }; sweep = derive2 { name="sweep"; version="0.2.3"; sha256="1705mcp9p5h50ifqjjwx61z5wl5izv889nxcgdkx1i0dlcr61l2a"; depends=[broom dplyr forecast lubridate rlang tibble tidyr timetk]; }; sweidnumbr = derive2 { name="sweidnumbr"; version="1.4.2"; sha256="0zzjvwd60w9b5ybsb72aqa42sx6al4ymr591j3zryxgpl6rms5rh"; depends=[checkmate lubridate stringr]; }; swephR = derive2 { name="swephR"; version="0.3.0"; sha256="0fk5wih3i5vpkcc9y1n30xwc1hyqgfgnad9jkdgdx0m31pn1y9j5"; depends=[Rcpp]; }; swfscAirDAS = derive2 { name="swfscAirDAS"; version="0.2.2"; sha256="0xj2r0hv755kqjn4awkf16d24vkmfny6b1xa7ia07pdc25iggrgm"; depends=[dplyr lubridate magrittr readr rlang stringr swfscDAS swfscMisc tidyr]; }; swfscDAS = derive2 { name="swfscDAS"; version="0.6.1"; sha256="1f9i4vj803jk29cds21mr51wm0z62vx96a4ww0cxi4gbyam7rwks"; depends=[dplyr lubridate magrittr purrr readr rlang sf swfscMisc tidyr]; }; - swfscMisc = derive2 { name="swfscMisc"; version="1.5"; sha256="1j762xf9b8clvc3m89s1y3lz5cn8a43wphhfd1wa2f5k1bw3bqd5"; depends=[dplyr ggplot2 ggrepel kknn magrittr mapdata maps rlang sf spatstat_geom tibble tidyr]; }; + swfscMisc = derive2 { name="swfscMisc"; version="1.6"; sha256="1nsr4n4dqm2jhmf3z2yg9x63x394cank70i41zrp2m0sd9wqprgk"; depends=[dplyr ggplot2 ggrepel HDInterval kknn magrittr mapdata maps rlang sf spatstat_geom tibble tidyr]; }; swgee = derive2 { name="swgee"; version="1.4"; sha256="1a6zr4nkpj52b0rk01qbwzi8y0c798wlxzw69wyyv576k148rgfq"; depends=[gee geepack mvtnorm]; }; swimplot = derive2 { name="swimplot"; version="1.2.0"; sha256="02w1l67hvz8gha8gcqxcvcr8g2azidn6bvw76h3k75p9rvq8sgpp"; depends=[dplyr ggplot2 tidyr]; }; swirl = derive2 { name="swirl"; version="2.4.5"; sha256="0cqyn2rnqfkb2wza4zdr1kcms5l0igbq79xh5i7765agdday2z9w"; depends=[digest httr RCurl stringr testthat yaml]; }; @@ -17641,8 +17252,7 @@ in with self; { symDMatrix = derive2 { name="symDMatrix"; version="2.1.1"; sha256="0xmpw37qkbadqp1idv8qmazdmmv0sd4fwgihg1b97hxzqhsxw0fh"; depends=[bit ff LinkedMatrix]; }; symSEM = derive2 { name="symSEM"; version="0.1"; sha256="084c47fkpgxjafx856d9xjijjz4l1da76bdqq63fvmhhiz17q8gs"; depends=[metaSEM mvtnorm OpenMx Ryacas]; }; symbolicDA = derive2 { name="symbolicDA"; version="0.6-2"; sha256="0fd36dndzs0n0xwz38px5182gc6ng174n433rgch1s1g6bh8dn4s"; depends=[ade4 cluster clusterSim e1071 rgl RSDA shapes XML]; }; - symbols = derive2 { name="symbols"; version="1.1"; sha256="1234rx3divhg60p0h0zn11viqn51fm6b8876m6rip2i6z8vrg319"; depends=[shape]; }; - symengine = derive2 { name="symengine"; version="0.1.6"; sha256="10d4v3whfbwd8a4bf24jyf8lndcafpwdh8gwynf8wscjfc0c7zi2"; depends=[Rcpp]; }; + symengine = derive2 { name="symengine"; version="0.2.1"; sha256="1zxfa4i2yi7b2a0ll0ml5fjmd4zcdwvfgyhlv30m8iyfzwbrzxfz"; depends=[Rcpp]; }; symmetry = derive2 { name="symmetry"; version="0.2.1"; sha256="041vxbva5kaywpn4y7kjwlc2cj56iyvd51iv5198dv280jfcnjv9"; depends=[Rcpp RcppArmadillo Rdpack]; }; symmoments = derive2 { name="symmoments"; version="1.2.1"; sha256="0wl68nsvydfhlbyaj54alj31dphqigyp1s4h2xdapxj4zvwf2sws"; depends=[combinat cubature multipol mvtnorm]; }; symphony = derive2 { name="symphony"; version="0.1.0"; sha256="0pwl9ahiv0xxc7j6448cja77fvcng28gdwhhr1z0qmhjsdcxadxq"; depends=[class data_table dplyr ggplot2 ggrastr ggrepel harmony irlba magrittr Matrix purrr RANN RColorBrewer Rcpp RcppArmadillo rlang tibble tidyr uwot]; }; @@ -17651,7 +17261,7 @@ in with self; { synchronicity = derive2 { name="synchronicity"; version="1.3.5"; sha256="1kgsk64aifjm3mfj102y3va7x1abypq2zi0cqbnjhl8fqyzp69hx"; depends=[BH bigmemory_sri Rcpp uuid]; }; synchrony = derive2 { name="synchrony"; version="0.3.8"; sha256="1zpxg4dkxnvafiyp0j00wig5ymj10bzfg2376x56rzpnabhg57hi"; depends=[]; }; synfd = derive2 { name="synfd"; version="0.1.3"; sha256="1h8vfrfw00449vjbj6z4y7m5p7rxzvqjcykyxw5sb473f63gr5px"; depends=[L1pack Rdpack]; }; - synlik = derive2 { name="synlik"; version="0.1.4"; sha256="009kw0cx49jvm9giw2hp8lv72rf69q7h5d4gjigp2bsx309yfzcs"; depends=[Matrix Rcpp RcppArmadillo]; }; + synlik = derive2 { name="synlik"; version="0.1.5"; sha256="0qx4j3nqppq5kswdvj1wfcilmmi5vhwrkcf16y5nfxbyzzij94sh"; depends=[Matrix Rcpp RcppArmadillo]; }; synoptReg = derive2 { name="synoptReg"; version="1.2.1"; sha256="1v282ag4275p5lm6yvzwkpndrf4cnrpn0rw3v6mh5hxnb2pbmjl5"; depends=[dplyr ggplot2 kohonen lubridate magrittr metR raster rnaturalearth rnaturalearthdata RNCEP sf stringr tibble tidyr]; }; synr = derive2 { name="synr"; version="0.5.1"; sha256="1x7357p2hgqqfcqxbhdc1c34a0axy9iwrlfcdqbnj8cj4b9dnwpa"; depends=[data_table dbscan ggplot2]; }; syntaxr = derive2 { name="syntaxr"; version="0.8.0"; sha256="1iik9b3x9jx7w31j7hyi3sixg30l5a6w40svhqj1xlchsk60yykn"; depends=[magrittr]; }; @@ -17684,13 +17294,13 @@ in with self; { tableExtra = derive2 { name="tableExtra"; version="1.0.1"; sha256="1rbcxd3rjhvcpayj6d7mh30vkbc7g4mv4qa7552xz3x1wny0n4mm"; depends=[gtable]; }; tableHTML = derive2 { name="tableHTML"; version="2.1.0"; sha256="01bffjqi2qs66w67l5nc0imqdcaf4cky930srkd2wmvvawv85kwc"; depends=[htmltools jpeg magrittr png shiny webshot]; }; tableMatrix = derive2 { name="tableMatrix"; version="0.82.0"; sha256="1sskijhbqakamrk2rv7v5zpjsdi8jw0jl2z96l0vhsvsiq0cz1c8"; depends=[data_table]; }; - tableeasy = derive2 { name="tableeasy"; version="1.1.1"; sha256="1xvhxgdpx0a4fk4fv59i1kxplzzqyzjd3ha93l5wjadkl9hijwr9"; depends=[lmtest mgcv nortest survival tableone]; }; - tableone = derive2 { name="tableone"; version="0.13.0"; sha256="0ihk29gcbqvvif2y8aalgnpq8y87irrp8z6ik4iaxh2xb6ksawqw"; depends=[e1071 gmodels labelled MASS nlme survey zoo]; }; + tableeasy = derive2 { name="tableeasy"; version="1.1.2"; sha256="1aa3af245w1frj94j0qynyjv5pvvajas2fmdnyyiknrnrghcn7n2"; depends=[lmtest mgcv nortest survival tableone]; }; + tableone = derive2 { name="tableone"; version="0.13.2"; sha256="1br78y68037g5v5jhgi9l393kj2msamdklim8ki40hmxk9bibkxi"; depends=[e1071 gmodels labelled MASS nlme survey zoo]; }; tablerDash = derive2 { name="tablerDash"; version="0.1.0"; sha256="1mnp6lxa7d669r325aynq1n3f35r9sy4v1fvdh4cymbf33s8mkmm"; depends=[htmltools knitr shiny]; }; tables = derive2 { name="tables"; version="0.9.6"; sha256="1y0gnqd2q0gn1dr2nxdlsvyl4g5jnj9y9lx18bhvhrfzb5038j5w"; depends=[htmltools knitr]; }; tableschema_r = derive2 { name="tableschema.r"; version="1.1.1"; sha256="14cnbijxdhf7qbsiqbk8p516mfh9bgdbcg32vn5pycsp30k78b2h"; depends=[config future httr iterators jsonlite jsonvalidate lubridate purrr R6 RCurl rlist stringr urltools]; }; tablesgg = derive2 { name="tablesgg"; version="0.8-1"; sha256="0vkl9386qnalr5d0libqs2ihszggs0qyx6ffyjn8j8ab3kczzxhr"; depends=[ggplot2 tables]; }; - tablet = derive2 { name="tablet"; version="0.4.9"; sha256="1xn4iyah82y1y0mrg0c7sq7g69b0mah6bxrmn4iy7pxx4by54wc0"; depends=[dplyr DT kableExtra rlang spork tidyr]; }; + tablet = derive2 { name="tablet"; version="0.5.8"; sha256="0c5gjrvr6r4vqxh2dc7v2jads48wwijvbzadxa92qzfsmxw3p382"; depends=[dplyr DT fs kableExtra magrittr rlang spork tidyr]; }; tabnet = derive2 { name="tabnet"; version="0.3.0"; sha256="04m8bg1glnhxb2pjcxnwlcwzbxvk0bskz00dkd4lyvgsq74xwmvi"; depends=[coro glue hardhat magrittr progress rlang tibble torch vctrs]; }; tabr = derive2 { name="tabr"; version="0.4.5"; sha256="1nkzbqy9nb6pd895glld009vmry5rnhd7h9q31s8xh97kwlwk9c2"; depends=[crayon dplyr ggplot2 magrittr purrr tibble tidyr]; }; tabshiftr = derive2 { name="tabshiftr"; version="0.3.2"; sha256="09fmz9p6ky1z45f4vyp5cq267cijhd5q9aqwwk7r830jhwnm9547"; depends=[checkmate crayon dplyr magrittr purrr rlang stringr testthat tibble tidyr tidyselect]; }; @@ -17702,7 +17312,7 @@ in with self; { tabulate = derive2 { name="tabulate"; version="0.1.0"; sha256="1x5rf8shd3jxa7k8p8ak5a6c2fmxv476is5vlrg1fsg6f964h01v"; depends=[cli magrittr Rcpp rlang]; }; tabulator = derive2 { name="tabulator"; version="1.0.0"; sha256="1dylmw5prwir3qj13lxkvlzq6j7r23y3gz1g0bjyanb0xmzgxn4k"; depends=[assertthat data_table dplyr magrittr purrr rlang stringr tibble tidyr]; }; tabulog = derive2 { name="tabulog"; version="0.1.1"; sha256="0n6qjd7kmvxx5na71f358pw3bbwa69vh8qjkrs5mkb3izxabcq67"; depends=[yaml]; }; - tabxplor = derive2 { name="tabxplor"; version="1.0.2"; sha256="0gwnw4psgz5byfrpvm3s5bfc13fwmw0wh8fafrr8rpbwm8gy33fy"; depends=[cli crayon DescTools dplyr forcats kableExtra magrittr pillar purrr rlang stringi stringr tibble tidyr tidyselect vctrs]; }; + tabxplor = derive2 { name="tabxplor"; version="1.0.3"; sha256="13zmjm8lxb8df2k8aiydm58l97zrqbddbjwhyi4jjc0d134vqyqf"; depends=[cli crayon DescTools dplyr forcats kableExtra magrittr pillar purrr rlang stringi stringr tibble tidyr tidyselect vctrs]; }; tacmagic = derive2 { name="tacmagic"; version="0.3.1"; sha256="1rayyavjppi5dbcmb4yb2nf85ch2li766sdllfsirb19bb3d4c2d"; depends=[pracma R_matlab]; }; tactile = derive2 { name="tactile"; version="0.2.0"; sha256="0jjfbsadxbf9s6vzi82rw5qa6hdc8iz4jci9xpbzwrjkb90dzd08"; depends=[gridExtra lattice latticeExtra MASS RColorBrewer]; }; tagcloud = derive2 { name="tagcloud"; version="0.6"; sha256="04zrh029n8pjlxlr6pdd7xhqqhavbrj3fhvhj6ygzlvi2jslxnwl"; depends=[RColorBrewer Rcpp]; }; @@ -17712,29 +17322,27 @@ in with self; { taipan = derive2 { name="taipan"; version="0.1.2"; sha256="192sy5pgq74vs31p7jfn6svdzf9mk9ybppzhp1rlki1bagmm5f1r"; depends=[shiny]; }; takos = derive2 { name="takos"; version="0.2.0"; sha256="09w9lkqhxdb26fvrsb8n16601kqpr2smplipx3lj6cdgbyhb1hqz"; depends=[baseline broom colorRamps data_table deSolve devEMF MASS minpack_lm pracma segmented sfsmisc smoother]; }; tanaka = derive2 { name="tanaka"; version="0.2.0"; sha256="0s1pmjyjiask5bvrwzllzzhkw6xqqqf5bqf5rc1akl89dacyzwll"; depends=[isoband sf terra]; }; - tangles = derive2 { name="tangles"; version="0.8.1"; sha256="06a5hn5hkvgr6pcjz3n0vi1zwmv00wypi5f62agqh8mas80v44vh"; depends=[digest raster sp]; }; tangram = derive2 { name="tangram"; version="0.7.1"; sha256="0p0hrn3jv1l00nsjqa0j9yv4982r08fwgsj01pc06vmipg87kjiy"; depends=[base64enc digest htmltools knitr magrittr R6 stringi stringr]; }; - tangram_pipe = derive2 { name="tangram.pipe"; version="1.1.0"; sha256="08whj66nf3idqvjnzgni5iqyqakbdwvrapdixx0zff7q8qbkar8z"; depends=[dplyr]; }; + tangram_pipe = derive2 { name="tangram.pipe"; version="1.1.1"; sha256="1bnc1y4l0vkn72mliq65mjsyd2nm1ivh1w227q98dacxxamdvj61"; depends=[dplyr]; }; tapkee = derive2 { name="tapkee"; version="1.2"; sha256="1xgz2cv5jb1hdnl8y8zs4x6p1dk1vv8zbs4wfsj61gpfyf9gkh4f"; depends=[]; }; tapnet = derive2 { name="tapnet"; version="0.3"; sha256="1fjg98m19iwbzijs5b5l4ssrbx1shv1hmgn1166cbni9y76m44sh"; depends=[ape bipartite MPSEM phytools vegan]; }; - tarchetypes = derive2 { name="tarchetypes"; version="0.5.0"; sha256="0xqbally2ayr1n2wsc8w985i4j0wfqpndhhdcrpn7hayc9gk4crd"; depends=[digest dplyr fs rlang targets tibble tidyselect vctrs withr]; }; + tarchetypes = derive2 { name="tarchetypes"; version="0.6.0"; sha256="1knzzbfxka8n1vvz7ikplckqzrdw62fqy5wkh46fvgcb13dmx99a"; depends=[digest dplyr fs rlang targets tibble tidyselect vctrs withr]; }; targeted = derive2 { name="targeted"; version="0.2.0"; sha256="0xcw2xcvp4yz37djl2m7fwr61hfrarbrr05rcnbqkjs3y4q5p99g"; depends=[data_table digest futile_logger future_apply lava optimx progressr Rcpp RcppArmadillo]; }; - targets = derive2 { name="targets"; version="0.11.0"; sha256="0dwx34sq0m6pmi2kn47yidrjdgsy43ykvzz3zsvh1yz9jh19w7q8"; depends=[base64url callr cli codetools data_table digest igraph knitr R6 rlang tibble tidyselect vctrs withr yaml]; }; + targets = derive2 { name="targets"; version="0.12.0"; sha256="096hw48253izfc2chyk5c4dplw5ha669nx7ca447hs8p0cniijjz"; depends=[base64url callr cli codetools data_table digest igraph knitr R6 rlang tibble tidyselect vctrs withr yaml]; }; tashu = derive2 { name="tashu"; version="0.1.1"; sha256="0rirjalridr79a7j3qz80l2vp6m8paqr97ac241b58756k7nr5j7"; depends=[dplyr drat ggplot2 lubridate plyr randomForest RColorBrewer reshape2]; }; tastypie = derive2 { name="tastypie"; version="0.1.0"; sha256="15ivl0rvnp1j09axk0jaf1wip5cjbnvfmx0crhqqd5y27mfa2hzd"; depends=[dplyr fmsb ggplot2 packcircles RColorBrewer scales shadowtext tibble]; }; tatest = derive2 { name="tatest"; version="1.0"; sha256="1yd9pdpdhxwpllnj5wxa7ly29qiw8qywx9lx0w3nizczlx35fgjy"; depends=[]; }; tatoo = derive2 { name="tatoo"; version="1.1.1"; sha256="0w9rm6cnc1mpfyklb8njzjwph2c38niinzxiflrqjqfdp7nd8281"; depends=[assertthat colt crayon data_table magrittr openxlsx stringi withr]; }; tau = derive2 { name="tau"; version="0.0-24"; sha256="1q8pd7m6rd0899c44plxns5yydifhsccyb51glgw07ni5v4rz3gh"; depends=[]; }; tauturri = derive2 { name="tauturri"; version="0.3.0"; sha256="014301f5mzy6vblqzb61bxjv46kdynmmrxjpxyvk01w1k8wkwfcn"; depends=[httr magrittr plyr purrr tibble]; }; - taxa = derive2 { name="taxa"; version="0.4.1"; sha256="0k55rn64iz6zbmvkrmx01i716k0vzqqi4ahaw63dfvk3n10gx4zy"; depends=[cli crayon dplyr magrittr pillar rlang stringr tibble vctrs viridisLite]; }; - taxadb = derive2 { name="taxadb"; version="0.1.4"; sha256="00cbbma9wahm6ka75kzpfqgns0cr2z2ri6bpp919icwkvi5rpbmr"; depends=[arkdb contentid curl DBI dbplyr dplyr duckdb jsonlite magrittr progress R_utils rappdirs readr rlang stringi tibble]; }; + taxa = derive2 { name="taxa"; version="0.4.2"; sha256="1vb3igz24xkgsds5145h3hqlc7grn3l2kpslg87j4hsw66i86py3"; depends=[cli crayon dplyr magrittr pillar rlang stringr tibble vctrs viridisLite]; }; + taxadb = derive2 { name="taxadb"; version="0.1.5"; sha256="0w8sqgcj0b7q8dnz4ln0p1591x9rh2151qdw8x202p3lqqymn5k9"; depends=[arkdb contentid curl DBI dbplyr dplyr duckdb jsonlite magrittr progress R_utils rappdirs readr rlang stringi tibble]; }; taxalight = derive2 { name="taxalight"; version="0.1.5"; sha256="035jzz1dk1icxs9mbd6q091ljf1lalr0wwbcz6a90avwyqphjjx3"; depends=[contentid thor]; }; - taxize = derive2 { name="taxize"; version="0.9.99"; sha256="0738fzckbwkgf21vranxhcfjq487rp3kjdnz2gfvdd1dm21jfp8s"; depends=[ape bold cli conditionz crayon crul data_table foreach jsonlite natserv phangorn R6 ritis rotl rredlist tibble wikitaxa worrms xml2 zoo]; }; + taxize = derive2 { name="taxize"; version="0.9.100"; sha256="0afdjcwkkpkc5kgk558jccnw6jzs6mswd4i86c316pgb8py7irg2"; depends=[ape bold cli conditionz crayon crul data_table foreach jsonlite natserv phangorn R6 ritis rotl rredlist tibble wikitaxa worrms xml2 zoo]; }; taxizedb = derive2 { name="taxizedb"; version="0.3.0"; sha256="1d7wz6df624263myq4rlvr3mhzhhhdglrrs7f44j201z4f536a2z"; depends=[curl DBI dbplyr dplyr hoardr magrittr readr rlang RSQLite tibble]; }; taxlist = derive2 { name="taxlist"; version="0.2.2"; sha256="0xdl7aw3ifn4v2wclk38iyayy9r71cx5diir1m4pws986qfdddb4"; depends=[foreign stringdist taxa taxize vegdata]; }; - taxonbridge = derive2 { name="taxonbridge"; version="1.0.5"; sha256="0s9w4p76s1ijrg19pr2y2hixqp6blgxkin569gz3wwny0ibq3b2i"; depends=[dplyr ggplot2 purrr rje vroom withr]; }; + taxonbridge = derive2 { name="taxonbridge"; version="1.2.1"; sha256="1lr8bwnjr7r97glvyviqfli27w222b0ma363irh8j3x0l5hfp4bs"; depends=[dplyr ggplot2 purrr rje stringr vroom withr]; }; taxonomizr = derive2 { name="taxonomizr"; version="0.8.0"; sha256="0i1xn5x8c555hdlnfbhpga4vzn1l6kcqjgcw472y8yg0n7s2birx"; depends=[curl data_table R_utils RSQLite]; }; - taxotools = derive2 { name="taxotools"; version="0.0.79"; sha256="1q69dh1ifa7mc8y3bdgvvg97s9prflh6mczqr4clxnsysd3xhafs"; depends=[plyr sqldf stringdist stringr taxize wikitaxa]; }; tayloRswift = derive2 { name="tayloRswift"; version="0.1.0"; sha256="1gr179hzqxih49v214dqawfhsbsahhyj1lbj77vqv00zq1siigpl"; depends=[]; }; taylor = derive2 { name="taylor"; version="1.0.0"; sha256="0w1r3vy6c03h14cxmxf938rmgmxnnhdfavivp6749xxd2qdca997"; depends=[crayon ggplot2 glue lifecycle rlang scales tibble vctrs]; }; tbart = derive2 { name="tbart"; version="1.0"; sha256="0m8l9ic7na70il6r9ha0pyrjwznbgjq7gk5xwa5k9px4ysws29k5"; depends=[Rcpp sp]; }; @@ -17749,13 +17357,14 @@ in with self; { tci = derive2 { name="tci"; version="0.1.2"; sha256="0j7bqmnh0x6070ywnb2fbmhmf4iwmfa8hjw9rbw1hybnp8il090s"; depends=[ggplot2 gridExtra mvtnorm Rcpp RcppArmadillo reshape truncnorm]; }; tcl = derive2 { name="tcl"; version="0.1.1"; sha256="01klrzvw7vc0iwqpmcikgqm8jx3g7536r5f8gb6vwcik912maxnl"; depends=[colorspace eRm lattice ltm MASS Matrix numDeriv psych psychotools]; }; tcltk2 = derive2 { name="tcltk2"; version="1.2-11"; sha256="1ibxld379600xx7kiqq3fck083s8psry12859980218rnzikl65d"; depends=[]; }; - tclust = derive2 { name="tclust"; version="1.4-2"; sha256="1nb5iky4kc832627jf28lzj19wrvgwg5da6fyl3kyf0npmyx1p4m"; depends=[]; }; + tclust = derive2 { name="tclust"; version="1.5-1"; sha256="09zk38gih67a8lk72k46mfgv21jpnxh2nzrxc5ypdc2bfwq8nckk"; depends=[]; }; tcpl = derive2 { name="tcpl"; version="2.1.0"; sha256="1rp5i3va11l12q37hl1v26k21i88giganyzycb6x8flank1myjwr"; depends=[data_table DBI numDeriv RColorBrewer RMariaDB sqldf]; }; tcplfit2 = derive2 { name="tcplfit2"; version="0.1.3"; sha256="1y69z27mgphcj5qkhlpgv0as59aralimf7mbfrdz5n6nkqfj5krr"; depends=[future future_apply numDeriv RColorBrewer stringr]; }; tcsinvest = derive2 { name="tcsinvest"; version="0.1.1"; sha256="1harmb5ni70k241aq1vww5w7fmjqmlwd6nfma2xa44f3hj7nrf52"; depends=[data_table httr jsonlite websocket]; }; td = derive2 { name="td"; version="0.0.6"; sha256="1zycwnl7n03jw76n8qrk2zhgnakj6npid25pflj6dnmbjc47ih32"; depends=[RcppSimdJson]; }; tdROC = derive2 { name="tdROC"; version="1.0"; sha256="137j1m9pysjcz1gsfcym0438by3c7na21ccjlqf7xfccr1y8k2k6"; depends=[survival]; }; tdaunif = derive2 { name="tdaunif"; version="0.1.0"; sha256="0a24lqiimp54fmj4zi7bakxral8ny60n25h9arwl6m00c7cn98pl"; depends=[]; }; + tdcmStan = derive2 { name="tdcmStan"; version="1.0.0"; sha256="08gdqm2hb33kw3jhag0n7a4linydxichzr0ss96yg9h65993pag0"; depends=[dplyr glue magrittr rlang stringr tibble tidyr]; }; tdigest = derive2 { name="tdigest"; version="0.3.0"; sha256="17axsir4xig3vm3sc2gziy9n0p80b14vg52nwys23bzkfp0n63bm"; depends=[magrittr]; }; tdr = derive2 { name="tdr"; version="0.13"; sha256="0i0hnb3fc4d1mbbxcpzmyfh1w2rahfjabg5iyxym3yjd6377al15"; depends=[ggplot2 lattice RColorBrewer]; }; tdsc = derive2 { name="tdsc"; version="1.0.3"; sha256="1h46cflxj27i9bkl7iqxn7kzccl9b8r3fa9f5ska3a9p57algfyv"; depends=[data_table moments]; }; @@ -17774,7 +17383,6 @@ in with self; { tempR = derive2 { name="tempR"; version="0.9.9.20"; sha256="12wnb9w5ql4q9n0gppjaxa66rrmdp0mklrhpp1chf9qr9wyzjkxi"; depends=[]; }; tempdisagg = derive2 { name="tempdisagg"; version="1.0"; sha256="1n1ng7xki4syy305gsclz7wrqb48vkjw3la0vxs975apv1mc4pzr"; depends=[]; }; temperatureresponse = derive2 { name="temperatureresponse"; version="0.2"; sha256="1id3wjzfs132hj8cm7gpf105qaay9dff07ixah9rmn5sk6si0zmq"; depends=[AICcmodavg broom dplyr minpack_lm numDeriv rootSolve]; }; - templateICAr = derive2 { name="templateICAr"; version="0.3.1"; sha256="1786anjsw2qnbpq6c0xwzngm6qzi84475xms5mqcmmf8vwsa0hbd"; depends=[abind ciftiTools excursions fMRIscrub ica Matrix matrixStats pesel SQUAREM]; }; templates = derive2 { name="templates"; version="0.3.0"; sha256="0xnzj3cvhw1r7zfqaijbfdyclka61jwixcdh05a5z9qwgv0076sh"; depends=[dat magrittr stringr]; }; tempoR = derive2 { name="tempoR"; version="1.0.4.4"; sha256="0gn16j496833pvbjaf6wx26z9ilwssjp947mcyk6n2jb33x93rr2"; depends=[doParallel foreach pls]; }; tenispolaR = derive2 { name="tenispolaR"; version="0.1.4"; sha256="0xpp1hi3xnkg55aixgy2bp5476i503h8gsiss9x7f15274kx0d7s"; depends=[stringr]; }; @@ -17782,7 +17390,7 @@ in with self; { tensorA = derive2 { name="tensorA"; version="0.36.2"; sha256="19wwh654qlja4z1n7afjpzsrrm53p8ddysa2vra5mdnkddb4g2cf"; depends=[]; }; tensorBF = derive2 { name="tensorBF"; version="1.0.2"; sha256="1dw1a6xqcsl4isbzbfiplgqq5nak5n9ffzm23mzzmkh1r1a8kl1y"; depends=[tensor]; }; tensorBSS = derive2 { name="tensorBSS"; version="0.3.8"; sha256="1chgkdshjpxzy0cxkgjzpr5k4v2hyad1vchrxyqhsj9isfic2581"; depends=[abind fICA ggplot2 ICtest JADE Rcpp RcppArmadillo tensor tsBSS]; }; - tensorTS = derive2 { name="tensorTS"; version="0.1.2"; sha256="0hwskjw611vlrd3q6yypgk6g8p704yih6m9869hjyn3x0rf2kw7n"; depends=[abind expm MASS Matrix pracma rTensor tensor]; }; + tensorTS = derive2 { name="tensorTS"; version="1.0.0"; sha256="0nbks7djd4wggn33f39zc2zacz6z4dpvgk9fj9a90kcmyiw0rckl"; depends=[abind expm MASS Matrix pracma rTensor tensor]; }; tensorflow = derive2 { name="tensorflow"; version="2.8.0"; sha256="19ayjvlxmgjais0kx6fj9an1h1i8mh4c9dhah7dj6390p53pgz93"; depends=[config processx reticulate rstudioapi tfautograph tfruns yaml]; }; tensorr = derive2 { name="tensorr"; version="0.1.1"; sha256="18xdvp328h96jn8y1iayxh7cyz2s8j5nn43nq18pyaxq271hkfyh"; depends=[assertive_base assertive_properties assertive_types Matrix purrr]; }; tensorregress = derive2 { name="tensorregress"; version="4.0"; sha256="0pb512v3gahgv3qc31i5v2jg8wixi6ps3p920sq5dgpfrig9hg2q"; depends=[MASS pracma speedglm]; }; @@ -17791,11 +17399,13 @@ in with self; { tergm = derive2 { name="tergm"; version="4.0.2"; sha256="0r1afidhfwmfkihcmry37j9imq26b55m84nxgv3r03y9cq8xdcas"; depends=[coda ergm MASS network networkDynamic nlme purrr robustbase statnet_common]; }; tergmLite = derive2 { name="tergmLite"; version="2.5.5"; sha256="0sg19ppvmy1wfqbvchn98maxiqzaa67yz64g4mhyxviksh1yzwxd"; depends=[ergm network networkDynamic Rcpp statnet_common tergm tibble]; }; term = derive2 { name="term"; version="0.3.4"; sha256="0pa275bzqbi0y58qy6pn5n289w8l5pndmr94sm64al2xdrl4hddl"; depends=[chk extras lifecycle purrr rlang universals vctrs]; }; + terminaldigits = derive2 { name="terminaldigits"; version="0.1.0"; sha256="0vj7pylr410wi59qj2313iximsyl0v9ffg7z9gcfg720g5zrvfkm"; depends=[discretefit Rcpp]; }; ternvis = derive2 { name="ternvis"; version="1.2"; sha256="057i6i3ygxrin0npc18gsg3dpdldzafyb5sr6lix5mhy6b09lkxf"; depends=[dichromat maps quadprog]; }; terra = derive2 { name="terra"; version="1.5-21"; sha256="0gzl0ka19jjw0dmaghjk2sgwi78kkz4w3rlfkym62rdarhlfj7h9"; depends=[Rcpp]; }; terrainmeshr = derive2 { name="terrainmeshr"; version="0.1.0"; sha256="1xab6wzq2izzdvsss1rlgp5m3cn45naxhymq6cglipj0fd792jbr"; depends=[Rcpp]; }; - terrainr = derive2 { name="terrainr"; version="0.6.1"; sha256="0xxvd536zgnmgb6p9fvkxaga4mqgb7qzd69xp8zm77a380j8dk05"; depends=[base64enc ggplot2 httr magick png raster rgdal sf units]; }; + terrainr = derive2 { name="terrainr"; version="0.7.0"; sha256="1ib6p41caiv61j421inqi7kbbr12mpc855w98lbjwzwk28nysw6z"; depends=[base64enc ggplot2 httr magick png sf terra unifir units]; }; tessellation = derive2 { name="tessellation"; version="2.1.0"; sha256="0pbdf18pz1j18x7lsz306x87p0d339a0y1nacynsqly0706g1s3d"; depends=[cxhull english hash interp R6 randomcoloR rgl Rvcg scales sets]; }; + tesselle = derive2 { name="tesselle"; version="1.0.0"; sha256="18bcwh12990m19fnk5vbwinmcarj28p8ah00s1kax3bamrlwbbjl"; depends=[arkhe dimensio folio kairos khroma tabula]; }; tesseract = derive2 { name="tesseract"; version="5.0.0"; sha256="1xdwjm3bing15ljdicl20g88ymmd0bbjmlbah5hzvws5b656iicn"; depends=[curl digest pdftools rappdirs Rcpp]; }; test2norm = derive2 { name="test2norm"; version="0.2.1"; sha256="1llzvdggjvc72qwkv9iiqxx7prj3hnr9bqpwsib4qmfpmmxsif37"; depends=[mfp]; }; testDriveR = derive2 { name="testDriveR"; version="0.5.1"; sha256="0wjdqvsyv33fsg1lljp9m0bhz38mpfgpgickgj4zdspc9x6lbnv6"; depends=[]; }; @@ -17807,25 +17417,25 @@ in with self; { tester = derive2 { name="tester"; version="0.1.7"; sha256="1x5m43abk3x3fvb2yrb1xwa7rb4jxl8wjrnkyd899ii1kh8lbimr"; depends=[]; }; testforDEP = derive2 { name="testforDEP"; version="0.2.0"; sha256="1mgzhj8b35r5cm4bl0nnyxj0h7rwd28d17qvgvaky2kvm2r83cf9"; depends=[Hmisc minerva Rcpp]; }; testit = derive2 { name="testit"; version="0.13"; sha256="104dcxdmzgj340mwk4lpw1y6j1xc4rv4a2v09ckx3nvbmdl73m4h"; depends=[]; }; - testthat = derive2 { name="testthat"; version="3.1.3"; sha256="0c7whxl6zwapqzdplwplvhs73w9blb419h2mdl21pwmqjhzjaq68"; depends=[brio callr cli crayon desc digest ellipsis evaluate jsonlite lifecycle magrittr pkgload praise processx ps R6 rlang waldo withr]; }; + testthat = derive2 { name="testthat"; version="3.1.4"; sha256="02cwdix7v8zsvcmcl3h5hfi66w1ln9qi60risf5nl62f3c1yqzm4"; depends=[brio callr cli crayon desc digest ellipsis evaluate jsonlite lifecycle magrittr pkgload praise processx ps R6 rlang waldo withr]; }; testthis = derive2 { name="testthis"; version="1.1.1"; sha256="0csragn695698dpkr9d3md0g81bzpy5mybd0jik669q9cs8sdzh2"; depends=[assertthat devtools fs magrittr pkgload rprojroot stringi testthat usethis]; }; testtwice = derive2 { name="testtwice"; version="1.0.3"; sha256="06fr13ww2wqk753p0cnl1ldn3nqrvdfnz0lgkpldcn0xwiwjh2x2"; depends=[mvtnorm]; }; tetraclasse = derive2 { name="tetraclasse"; version="0.1.21"; sha256="1cl2cah0xi6x3rvvdy56iszai6rkbxc1w3x13v0l1z1nryff7c6a"; depends=[dplyr FactoMineR ggplot2 ggrepel magrittr reshape2 tibble tidyr]; }; - tetragon = derive2 { name="tetragon"; version="1.0.0"; sha256="17n6g262f19bvxh0i35xcpf9qbdzaff80vvmx8vsijjiniw2hrbq"; depends=[abind ggplot2 greybox imputeTS lubridate modeest moments narray philentropy purrr readr scales stringr tictoc]; }; + tetragon = derive2 { name="tetragon"; version="1.1.0"; sha256="1piazbg5pam94y6kg20zb7nxv5ic02szcibqhi85yp5qm5c1ri95"; depends=[abind dqrng entropy ggplot2 greybox imputeTS lubridate modeest moments narray philentropy purrr readr scales stringr tictoc]; }; texPreview = derive2 { name="texPreview"; version="2.0.0"; sha256="0lw9yvpw5id9ix5kzv5zw0rlw6098hpjrzx00l0cn37vljmqqg0p"; depends=[base64enc details fs htmltools knitr magick rematch2 rstudioapi svgPanZoom tinytex whisker xml2]; }; texmex = derive2 { name="texmex"; version="2.4.8"; sha256="115x7j2kvifzsrmh8zy6xymm1p01sxk4c26zdmi0p51bsgvs46ih"; depends=[ggplot2 mvtnorm Rcpp]; }; texreg = derive2 { name="texreg"; version="1.38.6"; sha256="1z8j9whybvzjcrvivk3jhh8clfrbwdb7ss6mhqp0dlhbq2vn7gb8"; depends=[httr]; }; text = derive2 { name="text"; version="0.9.50"; sha256="0s81j3kbrzxcfbwxnk5hbdqlb3pjmlxjswjy8pj7s13h5gnsm1bw"; depends=[cowplot dplyr furrr future ggplot2 ggrepel magrittr overlapping parsnip purrr recipes reticulate rlang rsample stringi tibble tidyr tune workflows yardstick]; }; text_alignment = derive2 { name="text.alignment"; version="0.1.2"; sha256="0qjnzdm7savn2jqmm23cd3rszyihnhb5rfnygc36ccfd15vav79j"; depends=[Rcpp]; }; - text2map = derive2 { name="text2map"; version="0.1.3"; sha256="0p8knb450rz79531cb9kkc4rlns3p7qrq212jss2jcwxfnl640dv"; depends=[doParallel dplyr fastmatch foreach igraph kit magrittr Matrix mlpack qgraph rlang stringi stringr text2vec tibble]; }; + text2map = derive2 { name="text2map"; version="0.1.4"; sha256="00cfkfxj3jdlf69h1dsjplh31scl4vlc3ra0kqdh0l0spbcx093v"; depends=[doParallel dplyr fastmatch foreach igraph kit magrittr Matrix mlpack qgraph rlang stringi stringr text2vec tibble]; }; text2sdg = derive2 { name="text2sdg"; version="0.1.2"; sha256="1yq46jh11jymiqb4dmbvl1w35jq9ww6v3kra8px013qfdxvdnvlg"; depends=[corpustools dplyr ggplot2 magrittr stringr tibble tidyr]; }; text2speech = derive2 { name="text2speech"; version="0.2.13"; sha256="0c0h4yfp1gzaf4snav84iy5m0fx8az0pw1h2s33239dxkwcff893"; depends=[aws_signature dplyr googleAuthR googleLanguageR httr knitr magrittr mscstts tuneR]; }; - text2vec = derive2 { name="text2vec"; version="0.6"; sha256="0r75cv77x2zm1z66s95hic71dpbqmybz39n48q6mz7gfd3m7312y"; depends=[data_table digest lgr Matrix mlapi R6 Rcpp rsparse stringi]; }; + text2vec = derive2 { name="text2vec"; version="0.6.1"; sha256="0bisr31051hnshw26rp9r4bm8ksr977dl9k1d3fb1x79pq5aa2pi"; depends=[data_table digest lgr Matrix mlapi R6 Rcpp rsparse stringi]; }; textTinyR = derive2 { name="textTinyR"; version="1.1.7"; sha256="17c3vciqx2i0h0jkqsiva8kp6pwcrscwgyxf804sjvdbym0pwc7d"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; }; textTools = derive2 { name="textTools"; version="0.1.0"; sha256="1d9j1bj17ki169h4lmlz2b2c2m60q6b95prjscz346lc4vw5160a"; depends=[data_table]; }; textcat = derive2 { name="textcat"; version="1.0-7"; sha256="1m31alkzy13acgf4ahnzpbyazflhpmry369vqdvn5f86wcsls833"; depends=[slam tau]; }; textclean = derive2 { name="textclean"; version="0.9.3"; sha256="0kgjh6c4f14qkjc4fds7q7rpf4nkma3p0igm54fplmm3p853nvrz"; depends=[data_table english glue lexicon mgsub qdapRegex stringi textshape]; }; - textdata = derive2 { name="textdata"; version="0.4.1"; sha256="096gafbbh48yz4zbakv91cfd75kv8dg4p361s50rfqqjz57192fx"; depends=[fs rappdirs readr tibble]; }; + textdata = derive2 { name="textdata"; version="0.4.2"; sha256="0m7z47a0d61xfjd8lb9h7qxkkrwqlqj5k20i39nznv7lxp8nd0y6"; depends=[fs rappdirs readr tibble]; }; texteffect = derive2 { name="texteffect"; version="0.3"; sha256="1qcbr18h3vakh6ymw4axzqcqrpss6z68a592xl879b82l2nlq8a7"; depends=[boot ggplot2 MASS]; }; texter = derive2 { name="texter"; version="0.1.9"; sha256="1vj1dlv2dyb3hyr60p91sh4p514i0m7gf86zk32xbdyv6k9zdkmf"; depends=[dplyr ggplot2 magrittr plyr purrr stopwords stringr textdata tidyr tidytext]; }; textfeatures = derive2 { name="textfeatures"; version="0.3.3"; sha256="0x67kms7ipsadymc9jwja7wymav8y9kc5sbmp2vw4n4l89n32raa"; depends=[dplyr purrr rlang text2vec tfse tibble tokenizers]; }; @@ -17833,11 +17443,11 @@ in with self; { textile = derive2 { name="textile"; version="0.1.4"; sha256="069gb0j8ym44j1wk05xd3sixbvpxhhnhwax2gvyb9kbh5b99qpi6"; depends=[]; }; textir = derive2 { name="textir"; version="2.0-5"; sha256="0ban5qiinlxizqpcgafv4b5gwxlil6jdfarjd6l1m48awxh3mlnb"; depends=[distrom gamlr Matrix]; }; textmineR = derive2 { name="textmineR"; version="3.0.5"; sha256="0qpl9fnrirxsvch97pjwws02x67p3dk6fizg7h4wcjaihibbbx3q"; depends=[gtools magrittr Matrix Rcpp RcppArmadillo RcppProgress RSpectra stopwords stringr text2vec]; }; - textometry = derive2 { name="textometry"; version="0.1.4"; sha256="17k3v9r5d5yqgp25bz69pj6sw2j55dxdchq63wljxqkhcwxyy9lh"; depends=[]; }; + textometry = derive2 { name="textometry"; version="0.1.5"; sha256="0pm7d4s49y04fr6aldfqi8pbp3zhxr7f0plw0d28lv0qgph3h1km"; depends=[]; }; textplot = derive2 { name="textplot"; version="0.2.1"; sha256="10nxh9axhy6kyp6f3rz7smq08yl35ydx9jx47bs7i0bmcl2kwxvl"; depends=[data_table lattice Matrix]; }; textrank = derive2 { name="textrank"; version="0.3.1"; sha256="0a777wchiax0y8jprvz5xw8h1xh7yvad0wrqhkgbqy5p3cvlcih6"; depends=[data_table digest igraph]; }; textreadr = derive2 { name="textreadr"; version="1.2.0"; sha256="163ziizi3r00gamdl7wiwy5qsmb4sxlkw64qfij0b4jcr7p1ncqg"; depends=[antiword curl data_table pdftools readxl rvest striprtf textshape xml2]; }; - textrecipes = derive2 { name="textrecipes"; version="0.5.1"; sha256="1bc6wm4y4dg11g30rv67s4wya0kmvmp2pxxzv4aakhlb7badcbpr"; depends=[dplyr generics glue lifecycle magrittr Matrix purrr Rcpp recipes rlang SnowballC tibble tidyr tokenizers vctrs]; }; + textrecipes = derive2 { name="textrecipes"; version="0.5.2"; sha256="1sjj3yqz40yii0mv91a8jc0lj29qp9qqmgcyy6pmakq44sbyz4b7"; depends=[dplyr generics glue lifecycle magrittr Matrix purrr Rcpp recipes rlang SnowballC tibble tokenizers vctrs]; }; textreg = derive2 { name="textreg"; version="0.1.5"; sha256="0h44z5hyndnvzd9axix7gpmhbdx347dfgxw9r8w38kyw6dklbjy6"; depends=[NLP Rcpp tm]; }; textreuse = derive2 { name="textreuse"; version="0.1.5"; sha256="1mva0f6pk0kpfw0vf90qw3a25f1i3imdhk2s7hxyzans0z2237jd"; depends=[assertthat BH digest dplyr NLP Rcpp RcppProgress stringr tibble tidyr]; }; textshape = derive2 { name="textshape"; version="1.7.3"; sha256="0k9injxykgj2qprc7dygd7gafvcbh3r9x84qzaa1al21pk0dz7ds"; depends=[data_table slam stringi]; }; @@ -17846,7 +17456,7 @@ in with self; { textutils = derive2 { name="textutils"; version="0.2-1"; sha256="07grvvhs62caa37rav1v37816x6pdk0m5nd4isiw00966ydwy9ch"; depends=[]; }; tfCox = derive2 { name="tfCox"; version="0.1.0"; sha256="06mbiz1jwp8mv5dbwyvdvy1wpp8s3xp9hhsm94vrbvjaxg680g28"; depends=[Rcpp survival]; }; tfaddons = derive2 { name="tfaddons"; version="0.10.0"; sha256="16adig97qmafval6i29pqdinsgbwjz2isajxdx1xvbf1mrawkmz0"; depends=[keras purrr reticulate rstudioapi tensorflow]; }; - tfarima = derive2 { name="tfarima"; version="0.2.1"; sha256="1n7bdhcn6cvz7ly9b3jgxyw2nan0ixzj1m9d316yalmbkqh1md62"; depends=[numDeriv Rcpp RcppArmadillo zoo]; }; + tfarima = derive2 { name="tfarima"; version="0.3.1"; sha256="07w1052bnd7d3zsmks4anf6p4pvizv8h220fgz4h4yw46xicqf8a"; depends=[numDeriv Rcpp RcppArmadillo zoo]; }; tfautograph = derive2 { name="tfautograph"; version="0.3.2"; sha256="0fmaq1ggjyxgf2ss7qb8jk74sfwc3s1vc123pd5glclxcy1ib0j2"; depends=[backports reticulate]; }; tfdatasets = derive2 { name="tfdatasets"; version="2.7.0"; sha256="1yzh13mc1mwz464raa0q9gj6s4mv87g7mdla73scr5x009wqjpln"; depends=[generics magrittr reticulate rlang tensorflow tidyselect vctrs]; }; tfdeploy = derive2 { name="tfdeploy"; version="0.6.1"; sha256="1vbxyvmzaafbwp1pmvzn16zyl4nz85787m79gn7iazh9zw9f7j34"; depends=[httpuv httr jsonlite magrittr reticulate swagger tensorflow]; }; @@ -17863,21 +17473,24 @@ in with self; { tgamtheme = derive2 { name="tgamtheme"; version="0.1.0"; sha256="1igv6vl3vqqx8pbvj5qr21cjphpizq3b5sjss359bhw2gy747npl"; depends=[ggplot2]; }; tgcd = derive2 { name="tgcd"; version="2.5"; sha256="1zsmard9vai0m4gz5mf5b9qqv6i7h5xhv1mbs2sc0kcznk28jirn"; depends=[]; }; tggd = derive2 { name="tggd"; version="0.1.1"; sha256="1izar1b3w148vp2r8gv3vpwfndib8ilxcjxgbfzbxn7q5mr73mwa"; depends=[gsl]; }; + tglkmeans = derive2 { name="tglkmeans"; version="0.3.4"; sha256="122dhpsvbz1kvpy8x5f0jydvvz0hs8llz0wns7fjyx3nvvjlr45j"; depends=[doFuture dplyr future ggplot2 magrittr plyr purrr Rcpp tgstat tibble]; }; tgp = derive2 { name="tgp"; version="2.4-18"; sha256="1hwpjmij2a10d410bqkmj06ri109yr5zcc27r2m8x3zyd2wmb2qi"; depends=[maptree]; }; tgram = derive2 { name="tgram"; version="0.2-3"; sha256="0vlnry8drq3fqfy8dk50pcwcx9dj657kx6s19fs2b6acigkr4g7w"; depends=[zoo]; }; - tgstat = derive2 { name="tgstat"; version="2.3.16"; sha256="12apvcpdwfng0sp2v80xvpk7ynbadi2lvbfk14hlcsvw8h3rb268"; depends=[]; }; + tgstat = derive2 { name="tgstat"; version="2.3.17"; sha256="1yqg97shz06xndici0kg724na7ffkrv7nard0cryciw2rh59i7g4"; depends=[]; }; tgver = derive2 { name="tgver"; version="0.2.0"; sha256="0p8pm47kpajwhhk3a96rl2nfj69qqvbw5qwp1in3qv11wxv4cbyj"; depends=[callr geojsonsf plumber]; }; + thaipdf = derive2 { name="thaipdf"; version="0.1.2"; sha256="03h03bmw6q60jc80z14k7hpli0knhfbmhns0inbz0nhvisfzmsbq"; depends=[cli fs rmarkdown]; }; thankr = derive2 { name="thankr"; version="1.0.0"; sha256="089ikp85d5ia6a1qzmw8dkgcmz628cibmwfzcpk7m3ii8acxq91w"; depends=[]; }; + theft = derive2 { name="theft"; version="0.3.9.5"; sha256="1bz1fckxgcz016qhhinjwvnbmn2xzgb0nmzskfyzcjmzq0wahky4"; depends=[broom caret dplyr fabletools feasts ggplot2 janitor plotly purrr R_matlab Rcatch22 reshape2 reticulate rlang Rtsne scales tibble tidyr tsfeatures tsibble]; }; theiaR = derive2 { name="theiaR"; version="0.4.0"; sha256="07m532r67cil2ya2w9lfhycrm8n0ga0r3x7jwbp5jbd83hw4l1p6"; depends=[askpass httr R6 raster XML]; }; thematic = derive2 { name="thematic"; version="0.1.2.1"; sha256="1hr9373256n1rya3l2z2sqwfifypsh6wrs2s27aqchh9sm0blkmy"; depends=[farver ggplot2 rappdirs rlang rstudioapi scales]; }; - themis = derive2 { name="themis"; version="0.2.0"; sha256="0sliczk31584qcxhmyaczg2r497zk8w9mki4v00ndjw36jz37x54"; depends=[dplyr generics glue gower lifecycle purrr RANN recipes rlang ROSE tibble unbalanced withr]; }; + themis = derive2 { name="themis"; version="0.2.2"; sha256="1hcsa50l4zl9v6iwgy006jd1m6js6950rwwbisr0wcc8q4xdvb8r"; depends=[dplyr generics glue gower lifecycle purrr RANN recipes rlang ROSE tibble withr]; }; thermocouple = derive2 { name="thermocouple"; version="1.0.2"; sha256="1rlvhw3i83iq1vibli84gj67d98whvgkxafwpmisva1m4s1bmij4"; depends=[]; }; thestats = derive2 { name="thestats"; version="0.1.0"; sha256="15y6ibw7i4nrm8990yirqf64gl1x4l7lj3ajk19vi6ccxw82x2gl"; depends=[dplyr]; }; thewitcher = derive2 { name="thewitcher"; version="1.0.1"; sha256="140f0insb5gqrfdaq5cnzj6bl0akbif57jnyy7ai3rb2rwy9n2nv"; depends=[dplyr ggplot2 gridExtra magrittr MASS readr tidyverse usethis]; }; thgenetics = derive2 { name="thgenetics"; version="0.4-2"; sha256="1314gry3xs9v4jy13g08q16qy4ax3s0bc7d74gi0wbpkgdrk3lql"; depends=[]; }; thief = derive2 { name="thief"; version="0.3"; sha256="12ymkkisg5p0g1gmvlczhp4dc7mirjg55fqqmz2d90673vlg6rfq"; depends=[forecast ggplot2 hts]; }; thinkr = derive2 { name="thinkr"; version="0.15"; sha256="17mfw067advk8vxlz8x0w0vww3718zp2fcs00sca8ivlh8yh9fcg"; depends=[assertthat crayon devtools dplyr ggplot2 lazyeval lubridate magrittr officer purrr readr rvg stringi stringr tidyr]; }; - this_path = derive2 { name="this.path"; version="0.5.1"; sha256="0fmhi1ijnxcka7pb63azzga3iv4k5zkb7dnc9f2adphmnq4lqv70"; depends=[]; }; + this_path = derive2 { name="this.path"; version="0.7.0"; sha256="02xcdznx3kl4y79f5m2famlshlzdyhca4bfbvyxn46ybwz6sch83"; depends=[]; }; thor = derive2 { name="thor"; version="1.1.2"; sha256="0r4kgzbydjb7z0j808g5zdkx5wmbqncqg453bqm4ylafpj5z79kv"; depends=[R6 storr]; }; thorn = derive2 { name="thorn"; version="0.2.0"; sha256="0sybjqwv9al5khkhhc7khbgr7n2vy6aggarh9n75mxpa8hn7j2qr"; depends=[htmlwidgets]; }; thredds = derive2 { name="thredds"; version="0.1-1"; sha256="1ssx9sm55ycdny36nlydxqylfr0d51hyj3rgsmnk5d8wyhivnxb9"; depends=[httr magrittr R6 rlang xml2]; }; @@ -17889,12 +17502,12 @@ in with self; { threg = derive2 { name="threg"; version="1.0.3"; sha256="1ja0w4hhdkw3b1cipbpw8ym27k5lh2m7gibd74mj6gij7rpixrnb"; depends=[Formula survival]; }; thregI = derive2 { name="thregI"; version="1.0.4"; sha256="0zddd32fnfi98zwq08akkvhkg3c66sj3jii6ap8p1m9a0wg2k2k3"; depends=[Formula survival]; }; threshr = derive2 { name="threshr"; version="1.0.3"; sha256="1vs2jfvh1pjzyfz1s4w92sw13yz2nhc28gc3iyqz8a82rrdm4mdq"; depends=[revdbayes rust]; }; + thriftr = derive2 { name="thriftr"; version="1.1.7"; sha256="0qx96nd9wdmxgvlvv43q51qrqpmb98vz6hmrhlq3hp91w3g20p5a"; depends=[R6 rly stringi]; }; thsls = derive2 { name="thsls"; version="0.1"; sha256="18z7apskydkg7iqrs2hgnzby578qsvyd73wx8v4z3aa338lssdi7"; depends=[Formula]; }; thunder = derive2 { name="thunder"; version="0.3.0"; sha256="0lzaab5acgy4s7qkq10l0yfdgrsya74757a025j205jin4m49hai"; depends=[aiRthermo climate dplyr Rcpp]; }; thurstonianIRT = derive2 { name="thurstonianIRT"; version="0.12.1"; sha256="1qac1kg441x6fx3nxlhj1w1q7b3isivw6hzy7np3g1ics3kxpw8b"; depends=[BH dplyr knitr lavaan magrittr MplusAutomation mvtnorm Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr]; }; - tibble = derive2 { name="tibble"; version="3.1.6"; sha256="14l2i6ri3v5y0h8g0ahc4kz0pdqsp5yabxk2w8wavss6y44xjcsv"; depends=[ellipsis fansi lifecycle magrittr pillar pkgconfig rlang vctrs]; }; + tibble = derive2 { name="tibble"; version="3.1.7"; sha256="0wn8j7slfqrdl126g536sg1xkrvjd9rlsk0bjqk3b03nyj8hi9g1"; depends=[ellipsis fansi lifecycle magrittr pillar pkgconfig rlang vctrs]; }; tibbletime = derive2 { name="tibbletime"; version="0.1.6"; sha256="0pfph4pyjxkxrir5ca1sh7xz07dylqnq40w0qyqiyaj5s23mbbmb"; depends=[assertthat dplyr glue hms lifecycle lubridate purrr Rcpp rlang tibble tidyselect vctrs zoo]; }; - tibblify = derive2 { name="tibblify"; version="0.1.0"; sha256="0mdi9x36nrlcbchl7b2rlf4j1k0y6c7657aznm7xa0396ciij5fk"; depends=[crayon purrr rlang tibble vctrs]; }; tictactoe = derive2 { name="tictactoe"; version="0.2.2"; sha256="1fx8plj5zr04xwk5hfj3zqhcknidxlzya2q14cf0m3y33a86lx42"; depends=[hash]; }; tictoc = derive2 { name="tictoc"; version="1.0.1"; sha256="0197f540fkcxx5blx9jjnbvwgdnsdv55znmvgdizdp8pqhsib6m0"; depends=[]; }; tidyBdE = derive2 { name="tidyBdE"; version="0.2.4"; sha256="0qijyml3z38wq85vjfblgm85gvgmaz0vgffg1fiqjfgx78blk2f0"; depends=[dplyr ggplot2 readr scales tibble]; }; @@ -17904,24 +17517,24 @@ in with self; { tidyLPA = derive2 { name="tidyLPA"; version="1.1.0"; sha256="1lyd8cx90j49bm65330i57jyimiid75c2pvnzk7dcp6mbmglvimz"; depends=[dplyr ggplot2 gtable mclust mix MplusAutomation tibble]; }; tidyREDCap = derive2 { name="tidyREDCap"; version="0.2.2"; sha256="15xbkcfikzlglhh2y54rbpknbhzm6h9bq72f4h3g8bmfr44vy72g"; depends=[dplyr janitor magrittr purrr rlang stringr tibble tidyr]; }; tidyRSS = derive2 { name="tidyRSS"; version="2.0.4"; sha256="0djkdjgs64f00pcs5gc8vmijyjsfb5sm0p64bybhs1y0kb3wlnl3"; depends=[anytime dplyr glue httr jsonlite magrittr purrr rlang tibble tidyselect vctrs xml2]; }; - tidySEM = derive2 { name="tidySEM"; version="0.2.2"; sha256="0wbd3jf63j26qcnraqc94mz62cvkc8wqp7ww09m1kd83ik8mlca7"; depends=[blavaan ggplot2 gtable igraph lavaan MplusAutomation OpenMx psych]; }; - tidyUSDA = derive2 { name="tidyUSDA"; version="0.3.3"; sha256="1aqcvqc64qb8dbpmiw4cl06k0fh34fz5svzhjdgzrywl5qan3br3"; depends=[crayon dplyr fuzzyjoin ggplot2 httr jsonlite magrittr purrr sf tigris]; }; + tidySEM = derive2 { name="tidySEM"; version="0.2.3"; sha256="0l1b006kl46zgqqxjr339s3is9i6vb08lrwrrh8kvlwi40iipyjy"; depends=[blavaan ggplot2 gtable igraph lavaan MplusAutomation OpenMx psych]; }; + tidyUSDA = derive2 { name="tidyUSDA"; version="0.4.0"; sha256="0wbhrhb87zrk93b1nhll6pqhh4gpxf3x3j28m09vgzdggxhk9w5y"; depends=[checkmate crayon dplyr fuzzyjoin ggplot2 httr jsonlite magrittr sf tigris]; }; tidybayes = derive2 { name="tidybayes"; version="3.0.2"; sha256="00672xhg8a8r4sk36sm827bb435r1hchkphl1jpnkld8vbdhvpd2"; depends=[arrayhelpers coda dplyr ggdist ggplot2 magrittr posterior rlang tibble tidyr tidyselect vctrs withr]; }; tidybins = derive2 { name="tidybins"; version="0.1.0"; sha256="1kwwz0y1anlf1l8yl80xyiggdi8alsh0drb1529rijfk2jxlljg9"; depends=[badger ClusterR dplyr framecleaner ggplot2 janitor lubridate magrittr OneR purrr rlang rlist scales strex stringr tibble tidyselect xgboost]; }; tidyboot = derive2 { name="tidyboot"; version="0.1.1"; sha256="0nss1ci763g9p5f33g163ppamx72axc8xhrils0cql3ka8439pmn"; depends=[dplyr modelr purrr rlang tidyr]; }; tidycat = derive2 { name="tidycat"; version="0.1.2"; sha256="1c8ib5zcz2xk7yrzh4j5q4ccv6lnw58sh2ggqn04k2wp0gcj2zcs"; depends=[dplyr forcats magrittr stringr tibble tidyr]; }; - tidycensus = derive2 { name="tidycensus"; version="1.1.2"; sha256="1762nqx8g6d3h2pl2ph30c8j2gs46ykdvfb17h977rv6m6bxm40m"; depends=[crayon dplyr httr jsonlite purrr rappdirs readr rlang rvest sf stringr tidyr tigris units xml2]; }; + tidycensus = derive2 { name="tidycensus"; version="1.2.1"; sha256="0v1r98bpi50h753dkvs5zxgivhyjsip7y1r41wssvy15g4y12bxl"; depends=[crayon dplyr httr jsonlite purrr rappdirs readr rlang rvest sf stringr tidyr tidyselect tigris units xml2]; }; tidycharts = derive2 { name="tidycharts"; version="0.1.3"; sha256="1clpjyvqv6xhv7n64xh411x867fnn581qckzcwn18xbbbs56k6nn"; depends=[htmlwidgets knitr lubridate magick magrittr rlang rsvg stringr testthat]; }; tidycmprsk = derive2 { name="tidycmprsk"; version="0.1.2"; sha256="1xmi6dgp5b2kad3g0ymayx7slvgw53dmaibyj88yxf67m97p757r"; depends=[broom cli cmprsk dplyr ggplot2 gtsummary hardhat purrr rlang stringr survival tibble tidyr]; }; tidycode = derive2 { name="tidycode"; version="0.1.1"; sha256="0ahjhn1ar93xnd1snxnivdl43d1b6ica0pc30rgh8jpha87zbsay"; depends=[glue matahari pryr purrr rlang tibble]; }; tidycomm = derive2 { name="tidycomm"; version="0.2.1"; sha256="1h1xixa7fbijp1iifpwl689b1pz1vvpy7v4sc9wnkqgw0q31b3iy"; depends=[broom dplyr forcats glue magrittr MBESS purrr rlang stringr tibble tidyr]; }; - tidycwl = derive2 { name="tidycwl"; version="1.0.6"; sha256="1i2z5dxrqz1l3366fmmgc4pfqnhm91nlc0m4y8mvzwgsgmf6dkxp"; depends=[dplyr htmlwidgets jsonlite magrittr visNetwork webshot yaml]; }; + tidycwl = derive2 { name="tidycwl"; version="1.0.7"; sha256="172qpalm4n4m39pmg9g3fzd1hhfrnay76v1wmy861vmar000xcdp"; depends=[dplyr htmlwidgets jsonlite magrittr visNetwork webshot yaml]; }; tidydatatutor = derive2 { name="tidydatatutor"; version="0.1.0"; sha256="0d7qr1j5ag6ikzq89xc7w9pvsbcp14r0x8ra9v4svx59bg31n94q"; depends=[clipr knitr rstudioapi]; }; tidydice = derive2 { name="tidydice"; version="0.1.1"; sha256="1iagm3avd0ncnd2jrx1mgri96gcv3bs7vbn2qdq44idv222k9igd"; depends=[assertthat dplyr ggplot2 magrittr purrr tibble]; }; tidydr = derive2 { name="tidydr"; version="0.0.4"; sha256="0ws4z5ldz7wyhxn7h5gf8j4p3srvr5dfr6xxrf1rymx1iz9pd6sv"; depends=[ggplot2 rlang]; }; tidyestimate = derive2 { name="tidyestimate"; version="1.1.0"; sha256="0cwk6clah4sapbmfl5vvcv6di39azxb07z73pypnqx4gd32kk5q7"; depends=[dplyr ggplot2 ggrepel glue rlang]; }; tidyfast = derive2 { name="tidyfast"; version="0.2.1"; sha256="1bfs2wma705nx1lpndq75ama5dr9kkg8hwpklb20csnccnfrlvf6"; depends=[data_table Rcpp]; }; - tidyfst = derive2 { name="tidyfst"; version="1.6.0"; sha256="1x7aiypcwx9vdfpwgfza86xdk545kf038mc9gl84kga4binic4pl"; depends=[data_table fst stringr]; }; + tidyfst = derive2 { name="tidyfst"; version="1.6.5"; sha256="1ddwclhw1ms5hdfzwcwhfwlsvp3iyyd6bfz9qzhk5a9viz6yfbb2"; depends=[data_table fst stringr]; }; tidyft = derive2 { name="tidyft"; version="0.4.5"; sha256="0l6ixaqj356q319ms0bf655f530cgiia9saqdx9lryaf0b6i2hxb"; depends=[data_table fst stringr]; }; tidygapminder = derive2 { name="tidygapminder"; version="0.1.1"; sha256="1m6bynwnw1msrzvdmy12w3ympinqpd8j3may3rwmg9941nndjv2d"; depends=[data_table dplyr readxl tidyr]; }; tidygate = derive2 { name="tidygate"; version="0.4.9"; sha256="0zs2z4xf76d9hw7zwwpd3bisjvq672smbmxl0qgjb7xdzh66cqsf"; depends=[dplyr lifecycle magrittr purrr RColorBrewer rlang scales stringr tibble tidyr viridis]; }; @@ -17936,9 +17549,9 @@ in with self; { tidylo = derive2 { name="tidylo"; version="0.2.0"; sha256="07xnbycwrqg3cmbxx76drbjd0mx4s23vf3kihlc9rj4ajjx48z8r"; depends=[dplyr rlang]; }; tidylog = derive2 { name="tidylog"; version="1.0.2"; sha256="076am30ayc16wm3bilznxqzd5806yi7dx5m9yv4w7q90i7imsqk7"; depends=[clisymbols dplyr glue tidyr]; }; tidymodels = derive2 { name="tidymodels"; version="0.2.0"; sha256="1xkv4s4kn7k9137svb39zrm5302gxpxyp1jv5bb6z0xrvj5wwa4i"; depends=[broom cli conflicted dials dplyr ggplot2 hardhat infer modeldata parsnip purrr recipes rlang rsample rstudioapi tibble tidyr tune workflows workflowsets yardstick]; }; - tidymv = derive2 { name="tidymv"; version="3.3.0"; sha256="0r192jiwfj6pk41jpap8gfk0irjkx2877qiqxi1hm196hns6hpjg"; depends=[dplyr ggplot2 magrittr mgcv rlang tibble tidyr]; }; + tidymv = derive2 { name="tidymv"; version="3.3.1"; sha256="1mwqzikdlgxxb265raxirimsh8201j13hs2lj5m9xysplng1n4ia"; depends=[dplyr ggplot2 magrittr mgcv rlang tibble tidyr]; }; tidync = derive2 { name="tidync"; version="0.2.4"; sha256="1nm3021m3xnn4xkprkxd9sj9bwvfbwhrdhfdkfhsc9azqy3rgg9f"; depends=[dplyr forcats magrittr ncdf4 ncmeta purrr rlang RNetCDF tibble tidyr]; }; - tidyndr = derive2 { name="tidyndr"; version="0.2.0"; sha256="1c4g57zp50mfrsh8lac4iava37fx39i2yrjfrb1m0j22grsczfml"; depends=[dplyr forcats janitor lubridate magrittr purrr rlang stringr tibble tidyr tidyselect vroom]; }; + tidyndr = derive2 { name="tidyndr"; version="0.2.1"; sha256="0scjqnyl78aqqc03adlv3v0i67k3pi2a6m0cg6cxypaxhzzb2xg0"; depends=[dplyr forcats janitor lubridate magrittr purrr rlang stringr tibble tidyr tidyselect vroom]; }; tidypaleo = derive2 { name="tidypaleo"; version="0.1.2"; sha256="1pxn5hmlnj6bwc4hx45j3757djl1b4b1azgp1vsfkhsnl846lbjm"; depends=[digest dplyr ggplot2 ggstance purrr rioja rlang scales stringr styler tibble tidyr tidyselect vctrs withr]; }; tidypmc = derive2 { name="tidypmc"; version="1.7"; sha256="1fijlvdiw4vwm34wizm4xlm0x10vvpkldzk7rrla44apq7y2w3yq"; depends=[dplyr readr stringr tibble tokenizers xml2]; }; tidyposterior = derive2 { name="tidyposterior"; version="0.1.0"; sha256="1h1664sjrg6akph6nrk8ynn2kjiswv6gshy35gamam1h4axf6wah"; depends=[dplyr generics ggplot2 purrr rlang rsample rstanarm tibble tidyr tune vctrs workflowsets]; }; @@ -17956,8 +17569,8 @@ in with self; { tidystopwords = derive2 { name="tidystopwords"; version="0.9.1"; sha256="00kak679ddwdgvqmjs5312w9k8sapc1n7dxipgqqfjqw2xy0h1jh"; depends=[dplyr]; }; tidystringdist = derive2 { name="tidystringdist"; version="0.1.4"; sha256="1srxh5gyspcghzvnmpyq36ky608ipf71vv0s1jg01mgf2i5pdkf4"; depends=[attempt rlang stringdist tibble]; }; tidysynth = derive2 { name="tidysynth"; version="0.1.0"; sha256="0rckvp51gp22bjcwcszdhhn51bzjivwndnvjcf67h1vmyqa3zjkj"; depends=[dplyr forcats ggplot2 kernlab LowRankQP magrittr optimx rgenoud rlang tibble tidyr]; }; - tidytable = derive2 { name="tidytable"; version="0.7.1"; sha256="175b484w1iz1ppqlpffbz96xpwa723w8gq1hnj67f3qggwbf5yzs"; depends=[data_table glue lifecycle magrittr pillar rlang tidyselect vctrs]; }; - tidytext = derive2 { name="tidytext"; version="0.3.2"; sha256="0as7lscjl6ywk85almmb4f71vxmgkfds46g52ryggkg2isksvq3g"; depends=[dplyr generics hunspell janeaustenr lifecycle Matrix purrr rlang stringr tibble tokenizers vctrs]; }; + tidytable = derive2 { name="tidytable"; version="0.7.2"; sha256="11mihg62qs7pj7389p5ikmmkhwbg04g41hfd1ibcn3b73azrixmx"; depends=[data_table glue lifecycle magrittr pillar rlang tidyselect vctrs]; }; + tidytext = derive2 { name="tidytext"; version="0.3.3"; sha256="0kljaxyhhzbcv9jkjdy0wn6gkamh25y2xfb9k11sqhz3lv72nfvm"; depends=[dplyr generics hunspell janeaustenr lifecycle Matrix purrr rlang stringr tibble tokenizers vctrs]; }; tidytidbits = derive2 { name="tidytidbits"; version="0.3.2"; sha256="1zbm165bimjag7azhy77zlzqilygybqxz35q4r3d7hi7p6m96w78"; depends=[dplyr extrafont forcats magrittr purrr rlang stringr tibble tidyr tidyselect]; }; tidytransit = derive2 { name="tidytransit"; version="1.3.0"; sha256="1n7c4iblxa1yifh51x4767k61qp99r6r4pchcyvz4bq7jbvclf18"; depends=[checkmate data_table digest dplyr geodist gtfsio hms httr rlang sf]; }; tidytreatment = derive2 { name="tidytreatment"; version="0.2.2"; sha256="04z3afharkqyjk5kk097kpqlrmvq5220bsdlzmbzwl5k56vgxgxx"; depends=[dplyr purrr readr rlang tidybayes tidyr]; }; @@ -17968,7 +17581,6 @@ in with self; { tidywikidatar = derive2 { name="tidywikidatar"; version="0.5.1"; sha256="02zj4142pg1072dwjrfnmnpvy6jff55sr2pz5b72j5l7ldnk28fy"; depends=[DBI dplyr fs glue jsonlite magrittr pool progress purrr rlang RSQLite stringr tibble tidyr usethis WikidataQueryServiceR WikidataR WikipediR]; }; tidyxl = derive2 { name="tidyxl"; version="1.0.7"; sha256="1wg8h5fd2hd8ilshrbcs99q18p15687dx8j51v5pyd30pg5cab7b"; depends=[piton Rcpp]; }; tiff = derive2 { name="tiff"; version="0.1-11"; sha256="0xgc7vyndxxahfhc2qqzmwi56bnfyl0pn72l820jz5sd24aymhxq"; depends=[]; }; - tiger = derive2 { name="tiger"; version="0.2.3.1"; sha256="0xr56c46b956yiwkili6vp8rhk885pcmfyd3j0rr4h8sz085md6n"; depends=[e1071 hexbin klaR lattice qualV som]; }; tigerhitteR = derive2 { name="tigerhitteR"; version="1.1.0"; sha256="0inyi12lf8bn7nbklf2rjixk6wrgrjcp8njv7knai4dgvv7v0rfa"; depends=[Hmisc magrittr openxlsx zoo]; }; tigerstats = derive2 { name="tigerstats"; version="0.3.2"; sha256="0p5z4qh0aznj03rnhk4lpqfkwnsa5zgvj51rddkzligg9zx73xwl"; depends=[abd ggplot2 lattice manipulate MASS mosaic mosaicData rlang]; }; tigger = derive2 { name="tigger"; version="1.0.0"; sha256="12mcq3mvmcpmb7cc0c3sij03wa9i37c3ilxpa3fm2cr3g3yj2r1v"; depends=[alakazam doParallel dplyr foreach ggplot2 gridExtra gtools iterators lazyeval rlang shazam stringi tidyr]; }; @@ -17976,13 +17588,14 @@ in with self; { tigreBrowserWriter = derive2 { name="tigreBrowserWriter"; version="0.1.5"; sha256="0izgx1khci6qc6pz85dxj75kzxvpr30l0vhcv9476jrcbwqs4k8m"; depends=[DBI RSQLite]; }; tigris = derive2 { name="tigris"; version="1.6"; sha256="0q8niaa5l4xh2qfp243321ybqxg7s974wvifr4fdwnjgyjxgn57s"; depends=[dplyr httr magrittr maptools rappdirs rgdal sf sp stringr uuid]; }; tikzDevice = derive2 { name="tikzDevice"; version="0.12.3.1"; sha256="040yz6wi05151m9nal97symv66a133kk0a8c1h6nz058zk081vav"; depends=[filehash png]; }; - tiledb = derive2 { name="tiledb"; version="0.11.1"; sha256="1gyghz21d3v13129a1d3klpswir0j2j7al0rg6x2x5k81g3ijclg"; depends=[nanotime Rcpp]; }; + tiledb = derive2 { name="tiledb"; version="0.12.0"; sha256="1vq6595nirg5gm70xsznmjc3ss0xwzz969i60f9lwsv7ia5a8wwc"; depends=[nanotime Rcpp]; }; tilegramsR = derive2 { name="tilegramsR"; version="0.2.0"; sha256="11cnyvlghg8z7lr9ahzsjpyjrqnxqs77wdcydqvavrsqj745xvi2"; depends=[sf sp]; }; tilemaps = derive2 { name="tilemaps"; version="0.2.0"; sha256="06pwwlndb7nvw2b0h0fak3vnpbi11mxsby43qm9ng3k3sqwrqjz2"; depends=[clue ggplot2 igraph lwgeom sf smoothr]; }; tiler = derive2 { name="tiler"; version="0.2.5"; sha256="02sxc70s8v5b5lf1fpv1ig1hmpkamsmzbgpk6zds504gh9kz7qxy"; depends=[png raster rgdal sp]; }; tilting = derive2 { name="tilting"; version="1.1.1"; sha256="0srvxjv3sg35n7f8pam45ny1z1dxwqjkrz9d91hf67a3fi34f5gk"; depends=[mvtnorm]; }; - timbeR = derive2 { name="timbeR"; version="2.0.0"; sha256="1w3msacp58qsl9jsaaw9985kjdrzl8513lmr5wp6afl8xpc0yqwq"; depends=[cowplot dplyr ggplot2 lazyeval magrittr miniUI shiny tibble tidyr]; }; + timbeR = derive2 { name="timbeR"; version="2.0.1"; sha256="01lpx4pk22k9j4sbbhr9z7r6spfdrfazpxsyp7cxndrswa8m83zq"; depends=[cowplot dplyr ggplot2 magrittr miniUI shiny tibble tidyr]; }; timbr = derive2 { name="timbr"; version="0.1.0"; sha256="13v6manmaclpjc04rx0ddhcawfh9b8lbvb7hhzsry1v34ffpj64k"; depends=[dplyr memoise pillar purrr rlang tibble tidygraph tidyselect vctrs]; }; + time_slots = derive2 { name="time.slots"; version="0.2.0"; sha256="04qh8cgk3ixvvc67m2hal935m5kisq2n67cvjmsg1frz1bf2yvld"; depends=[dplyr ggfittext ggplot2 lubridate scales]; }; timeDate = derive2 { name="timeDate"; version="3043.102"; sha256="0wvl5pq261rvbgly7vilk3x3m9xk3ly6il1i5scwdf6srl1vlz1p"; depends=[]; }; timeR = derive2 { name="timeR"; version="1.2.0"; sha256="0lkx2ilbzq29w1c9ssya4f0za0sj7y30y9ml4v3zc21c1la0b6vi"; depends=[lubridate R6]; }; timeROC = derive2 { name="timeROC"; version="0.4"; sha256="1qxijg7hazc8bifwj2254ig2p3cbrp9p0bsyhhh3aikf1rg113v1"; depends=[mvtnorm pec]; }; @@ -17996,7 +17609,7 @@ in with self; { timelineS = derive2 { name="timelineS"; version="0.1.1"; sha256="076w8ckzzl59bc1gnwjgdwynnz86320hyfmzb0k26hl3k13jlmxs"; depends=[dplyr ggplot2 lubridate magrittr]; }; timeordered = derive2 { name="timeordered"; version="0.9.9"; sha256="0rfga5i6kckmlz2dzqb1pp634dl93wxp7v3kisxlbjl7mgnbck3k"; depends=[igraph plyr]; }; timeperiodsR = derive2 { name="timeperiodsR"; version="0.6.2"; sha256="09vwp04j7n176xs1lbdmbyi557byx6fdvqyjay1785hkb9ivws5q"; depends=[lubridate]; }; - timereg = derive2 { name="timereg"; version="2.0.1"; sha256="1mrqy54jwgfygjlm7hvlx42c631is1nc1q6jd3chw2cx3pi9lhiq"; depends=[lava numDeriv survival]; }; + timereg = derive2 { name="timereg"; version="2.0.2"; sha256="0n9mvdki50j0nbmbs1r91slf7j9nz4cwglscn71kckadsgjjpxmi"; depends=[lava numDeriv survival]; }; timesboot = derive2 { name="timesboot"; version="1.0"; sha256="1ixmcigi1bf42np93md8d3w464papg9hp85v0c3hg3vl4nsm2bji"; depends=[boot]; }; timeseriesdb = derive2 { name="timeseriesdb"; version="1.0.0-1.1.2"; sha256="17j1nxpgbfbzmfc6zrgcw68ri9ncslic9qdkxkdpfr2gi1w61bpc"; depends=[data_table DBI jsonlite RPostgres xts]; }; timetk = derive2 { name="timetk"; version="2.8.0"; sha256="0jwa3qllninjsq5xx7rhls72w1955a3ysscaq80vby7fjij80pwb"; depends=[anytime assertthat dplyr forcats forecast generics ggplot2 hms lubridate padr plotly purrr readr recipes rlang rsample slider stringi stringr tibble tidyr tidyselect timeDate tsfeatures xts zoo]; }; @@ -18019,18 +17632,18 @@ in with self; { tipa = derive2 { name="tipa"; version="1.0.5"; sha256="1mdjpbdbgd5n22l7fc0bfansh536ib1bgjaxzrl8g534cjxdnhgl"; depends=[optimr]; }; tipitaka = derive2 { name="tipitaka"; version="0.1.2"; sha256="0xf64bpzwywwjm0135c7zjn4ha0h1zj36rj2d4h8dskiq9z90xqi"; depends=[cpp11 dplyr magrittr stringi stringr]; }; tippy = derive2 { name="tippy"; version="0.1.0"; sha256="00c9v07ax7l0x5wpx3ca8hqvdqs3p62d58igp51rsbh9x1ylgjcn"; depends=[htmltools htmlwidgets jsonlite shiny]; }; - tipr = derive2 { name="tipr"; version="0.3.0"; sha256="1iaj3cklq12xr7xbvkam0mjnq3g2rcmwy1m3kdm26qm793082nyz"; depends=[glue purrr tibble]; }; + tipr = derive2 { name="tipr"; version="0.4.1"; sha256="0wg52x3hxam5syf0k5zpkfg395j0xf9f96rj7mz258pp9npjlflw"; depends=[glue purrr sensemakr tibble]; }; tipsae = derive2 { name="tipsae"; version="0.0.4"; sha256="1cz0xwablrfaygq4yfqsq82f5n9im9mqb6ypczr4mgzj93m4v5k7"; depends=[BH broom callr ggplot2 ggpubr gridExtra loo maptools nlme Rcpp RcppEigen RcppParallel Rdpack rgeos rstan rstantools shiny sp spam spdep StanHeaders]; }; tis = derive2 { name="tis"; version="1.39"; sha256="1sq3acz8mybsbxng5fga4ynqvh1ly9hs3ca727jiyx1gam712mis"; depends=[]; }; titanic = derive2 { name="titanic"; version="0.1.0"; sha256="0mdmh0ciwfig00847bmvp50cyvj8pra6q4i4vdg7md19z5rjlx3j"; depends=[]; }; titeIR = derive2 { name="titeIR"; version="0.1.0"; sha256="047vidn3zydbjijwgz6qm2d9j2ny8ng2sv5jzm8zb300y7k2426c"; depends=[Iso]; }; titrationCurves = derive2 { name="titrationCurves"; version="0.1.0"; sha256="0z127sihd262mdik46sq9vcf05s7jsqmkpm3p4d779viw74bl768"; depends=[]; }; + tkImgR = derive2 { name="tkImgR"; version="0.0.5"; sha256="158zw4qc04ifyhfdc8zk49vyfb2scn4xcjfcnz7qsfhivfn50zrh"; depends=[tkRplotR]; }; tkRplotR = derive2 { name="tkRplotR"; version="0.1.7"; sha256="1n8ihn6ys68dzfxi1wqdbq00qm41fwjw2vn9i3wyb4w1j73v82zy"; depends=[]; }; tkrplot = derive2 { name="tkrplot"; version="0.0-26"; sha256="086ir77m778y1bs81h5fcdn7v1k17cf6nz19zxx95xjk4m62crnx"; depends=[]; }; tldr = derive2 { name="tldr"; version="0.2.3"; sha256="0xagl35kz6vpqzxdgpmvjafgqrln07k65gnw8kfykj4rg7blfsxq"; depends=[ggplot2 reshape2 tableone]; }; tlemix = derive2 { name="tlemix"; version="0.1.3"; sha256="0c4mvdxlhbmyxj070xyipx4c27hwxlb3c5ps65ipm6gi8v8r6spj"; depends=[]; }; tlm = derive2 { name="tlm"; version="0.1.5"; sha256="1iw08pa70nb25fnv64834s5c8vl456a2rcng7x6v9vs5q37610g6"; depends=[boot]; }; - tlmec = derive2 { name="tlmec"; version="0.0-2"; sha256="1gak8vxmfjf05bhaj6lych7bm8hgav1x3h14k2ra7236v82rqbw7"; depends=[mvtnorm]; }; tlrmvnmvt = derive2 { name="tlrmvnmvt"; version="1.1.1"; sha256="1w8rahmdz176p7f496saiznk92bpvaq3pvpw235rwxna8vqkr607"; depends=[BH Rcpp RcppEigen]; }; tls = derive2 { name="tls"; version="0.1.0"; sha256="183b5m70s2whlgp9s1gb4xnylhlp4hnh3lw6b8f2vx4kahaid763"; depends=[]; }; tm = derive2 { name="tm"; version="0.7-8"; sha256="0mk2lsplynms15nw92vbdgsafg4bw1m0ik31gch1mnsnv61idsxi"; depends=[BH NLP Rcpp slam xml2]; }; @@ -18048,7 +17661,6 @@ in with self; { tmbstan = derive2 { name="tmbstan"; version="1.0.4"; sha256="1amjsvj7m7vyyhbppklw15n6xd02d2qjhswwzh543kc2f2hy79l4"; depends=[BH Rcpp RcppEigen RcppParallel rstan StanHeaders TMB]; }; tmcn = derive2 { name="tmcn"; version="0.2-13"; sha256="0rf8mz6kdm83pm85kzfyzb8kd3iwaxv5bgphjpxlnq6z32m9yds7"; depends=[]; }; tmle = derive2 { name="tmle"; version="1.5.0.2"; sha256="1m1zz48cp8agxswgrwvvzdh50kyyc84hw328nyhbbnfkx19c6wj7"; depends=[glmnet SuperLearner]; }; - tmle_npvi = derive2 { name="tmle.npvi"; version="0.10.0"; sha256="00jav1ql3lv18wh9msxnjvz36z2ds44fdi6lrp1pfphh1in4vdcl"; depends=[geometry MASS Matrix R_methodsS3 R_oo R_utils]; }; tmod = derive2 { name="tmod"; version="0.46.2"; sha256="139znivmsm7hr5hiiq7f9vab5hm0bzqf2qfs69n340gf1dgpyrd2"; depends=[beeswarm colorDF gplots plotwidgets RColorBrewer tagcloud XML]; }; tmplate = derive2 { name="tmplate"; version="0.0.3"; sha256="1w04bmir23ip3c7janix8i2qhdnmlg78jrrjlykl95vnsvjwld6g"; depends=[tRnslate]; }; tmpm = derive2 { name="tmpm"; version="1.0.3"; sha256="1fqk39zyc07gh0ygi7pfljlnj6ih37jsb7bcxm05zcd4796wil8j"; depends=[reshape2]; }; @@ -18060,6 +17672,7 @@ in with self; { tmvtnsim = derive2 { name="tmvtnsim"; version="0.1.1"; sha256="1gf5gqb333q82cbdw3lfjmxnn8z7qds73xmc8dqm06zcqsfmdbv3"; depends=[Rcpp RcppArmadillo]; }; tnet = derive2 { name="tnet"; version="3.0.16"; sha256="0922y9zb64zazl2irwfxxbghkgcwi2q57gylpiaxgmj4q6lc62l9"; depends=[igraph survival]; }; toOrdinal = derive2 { name="toOrdinal"; version="1.3-0.0"; sha256="1zfx91024dyafkfyjsm2829qsqkz57g6p5v47lp2x0ykrwpdbm37"; depends=[crayon testthat]; }; + toRvik = derive2 { name="toRvik"; version="1.0.2"; sha256="069n0ik4d7ykynxdfj1zgczhbn854x8adv0v0l4ibayqxz1pdp0m"; depends=[cli curl dplyr httr janitor jsonlite lubridate magrittr purrr readr rvest stringr tidyr withr]; }; toastui = derive2 { name="toastui"; version="0.2.1"; sha256="0c32410ylnp2b4h72aq7pig423jgcl63x8lmb8cf8m7h83xlj4ah"; depends=[htmltools htmlwidgets magrittr rlang shiny shinyWidgets]; }; tobit1 = derive2 { name="tobit1"; version="0.1-3"; sha256="08rq1h3psxjzzfna6krji4ixrbd43v77qb9k00v1rysarlqyg0k1"; depends=[Formula generics margins numDeriv prediction Rdpack tibble]; }; todor = derive2 { name="todor"; version="0.1.2"; sha256="1ncg88wh9l2mja5w53ry2b19sa5x9m6cnkvw8lszbmc92idpspig"; depends=[R_utils rex rstudioapi stringr]; }; @@ -18069,14 +17682,14 @@ in with self; { tokenizers_bpe = derive2 { name="tokenizers.bpe"; version="0.1.0"; sha256="1pwgjrzdcsafpv9rlyly6fckcjiymz0xcjm9byavj069kc4c69mi"; depends=[Rcpp]; }; tolerance = derive2 { name="tolerance"; version="2.0.0"; sha256="001snzr2ipag3zprynydlbi9prkjzrllc054qh7m0qwkb3r19jjd"; depends=[MASS rgl]; }; tomba = derive2 { name="tomba"; version="1.0.1"; sha256="1433jxghx8jrgy8r9kfp506vn58qpzp4wbzncks7fnignbb6cp50"; depends=[httr jsonlite testthat]; }; - tongfen = derive2 { name="tongfen"; version="0.3.3"; sha256="0hn2zmb5fa390bbwg03mxzlp3qc5pr61qxm6gjydja29gcpvbk9m"; depends=[dplyr lifecycle PROJ purrr readr rlang sf stringr tibble tidyr]; }; + tongfen = derive2 { name="tongfen"; version="0.3.5"; sha256="1xg5jvrl4cv86rylhyiyfdyhb9gr5vdabsp1cdfnz7wpmdkpwnxl"; depends=[dplyr lifecycle purrr readr rlang sf stringr tibble tidyr]; }; toolStability = derive2 { name="toolStability"; version="0.1.1"; sha256="1i5hdar4cv8788fzyfdnvmw3hpn059s2kjyxfcarpnc0clakd0by"; depends=[data_table dplyr nortest Rdpack]; }; toolmaRk = derive2 { name="toolmaRk"; version="0.0.1"; sha256="0pdr8lq4c11ia03v68lbfq38p3qp770mbj0nsbjsgbqi0pv9i1vx"; depends=[dplyr ggplot2 plyr reshape2]; }; tools4uplift = derive2 { name="tools4uplift"; version="1.0.0"; sha256="1izm9q2bj9l2nd9jn0fi3lf9hscfa0vmib58ypgpjsbsn0nd7p2h"; depends=[BiasedUrn dplyr glmnet latticeExtra lhs]; }; topicdoc = derive2 { name="topicdoc"; version="0.1.0"; sha256="0qliy6y8l09nblch1swlywam2awzwjl5xx0w8c3kiz48jxfysw0j"; depends=[slam topicmodels]; }; topicmodels = derive2 { name="topicmodels"; version="0.2-12"; sha256="1d6iizmn042b59q2y6qc82z19wq3xm0zvgkf8iqf8fdzh51kmn5g"; depends=[modeltools slam tm]; }; topicmodels_etm = derive2 { name="topicmodels.etm"; version="0.1.0"; sha256="06w2n1gswv268sgzm0nz14mmrahibnsgcxh7hcks3bmq9r8d9ba4"; depends=[Matrix torch]; }; - topmodel = derive2 { name="topmodel"; version="0.7.3"; sha256="15w9id90d6l0i0ji3ln3sxnpispb6pgabk4waysqn0nh6y4lfdgb"; depends=[]; }; + topmodel = derive2 { name="topmodel"; version="0.7.4"; sha256="18k0nz2i2jr0m2pmzy75d77drbk1smrw7kkni7j0k79m9izwsmkc"; depends=[]; }; topoDistance = derive2 { name="topoDistance"; version="1.0.1"; sha256="055z3gvqlb8nyy58ix89w7miav9gj3h43a4wcfc3kagd97xc3222"; depends=[gdistance igraph plotly raster RColorBrewer scales sp]; }; topologyGSA = derive2 { name="topologyGSA"; version="1.4.7"; sha256="073n8bkrapk6il3izqr3bmcdp7yc29yzpbyzh6fvy9rg0x4d3g0z"; depends=[fields graph gRbase qpgraph]; }; topr = derive2 { name="topr"; version="1.0.0"; sha256="1y4nqwh3s0phxp6ljifg8qaf40si0r771vwj4hv4aiw2yzgsy89y"; depends=[dplyr egg ggplot2 ggrepel gridExtra magrittr readr scales stringr toprdata]; }; @@ -18086,6 +17699,7 @@ in with self; { torch = derive2 { name="torch"; version="0.7.2"; sha256="163pvl3gyz7l2fmqhgg4k6pw4dmvfir71yp9l5ra2k4zc32lz166"; depends=[bit64 callr cli coro ellipsis magrittr R6 Rcpp rlang withr]; }; torchaudio = derive2 { name="torchaudio"; version="0.2.0"; sha256="1bzx428lzjdwb9ds2pcq7nlalg75s7bvmiimjw3k8lvbq50yjlyh"; depends=[fs glue rappdirs Rcpp rlang torch withr]; }; torchdatasets = derive2 { name="torchdatasets"; version="0.1.0"; sha256="1iliz3iv143zmffd4jvvfxzsqn8bzp1sg5573rqjjbhnvy958mgg"; depends=[fs pins stringr torch torchvision withr zip]; }; + torchopt = derive2 { name="torchopt"; version="0.1.1"; sha256="0c7vp0nzncv3cx9c3hlhv87dwghrrbfal3mbwbdaazsf8wf3z39l"; depends=[torch]; }; torchvision = derive2 { name="torchvision"; version="0.4.1"; sha256="07pdsqcnlmsc1yx7ldi18a0lqkgqbqwsqh7109rbrycczxrc1dqv"; depends=[abind fs jpeg png rappdirs rlang torch withr]; }; torchvisionlib = derive2 { name="torchvisionlib"; version="0.1.0"; sha256="0kiix21gqpjw4qhz9xwpmlygjy66qxjdk3ja3dbrc1gz3x132drl"; depends=[glue Rcpp rlang torch]; }; tornado = derive2 { name="tornado"; version="0.1.1"; sha256="12wvcc5p5fk6b1w3qhahjad5k0m34f744jszaid8hnrbbfysp8na"; depends=[assertthat ggplot2 gridExtra scales survival]; }; @@ -18103,13 +17717,13 @@ in with self; { toxtestD = derive2 { name="toxtestD"; version="2.0"; sha256="0b7hmpfhwg626r8il12shni0kw94cqnbj49y4vfh8gn98x1s6m48"; depends=[]; }; tpAUC = derive2 { name="tpAUC"; version="2.1.1"; sha256="0wix9qwcidj7xfqhh7bmrpnadd9qlkvg3515gaamdxkjbz2kyydc"; depends=[pROC]; }; tpfp = derive2 { name="tpfp"; version="0.0.1"; sha256="0vm5qssaanvi0sck2hj1qgjra89a42i6nvzbva5z0aj2hkd5h4vh"; depends=[knitr readxl xlsx]; }; - tpn = derive2 { name="tpn"; version="1.2"; sha256="1sf2zx3arwf5aix56kb8bj6hx60shpz3jy51mfifxrjy7jcrfrn8"; depends=[moments pracma skewMLRM VGAM]; }; + tpn = derive2 { name="tpn"; version="1.3"; sha256="0vxj0zf94qiba052vi2gas3lz2x52s9zpwwgv0nihym2gs1zxxxa"; depends=[moments pracma skewMLRM VGAM]; }; tpr = derive2 { name="tpr"; version="0.3-2"; sha256="0v2s35yjislzaw924r1mk7jqzs0bxx6kyd3g1sc9rxlflvlbp15y"; depends=[lgtdl]; }; tracer = derive2 { name="tracer"; version="1.0.0"; sha256="1jdh4ljcz7d0w2y5miggqkvv397jdx7fn108hbjw93af2gnh698q"; depends=[clisymbols crayon prettycode]; }; tracerer = derive2 { name="tracerer"; version="2.2.2"; sha256="0932074lzkzprn8rr8f59ywhgn33fwvbnkxnxg97k29gapx49iyb"; depends=[jsonlite Rcpp testit]; }; tracheideR = derive2 { name="tracheideR"; version="0.1.1"; sha256="1x1jwzgs2aqb3k17mm9mhfhnbwcmilhkjaz9rl40rcg84xjqdrpl"; depends=[tgram]; }; track = derive2 { name="track"; version="1.1.9"; sha256="1d0hab7xyayyhyyrbv8nvpka1kzry4yx10fg8aqwkca3nm7n2q3c"; depends=[]; }; - track2KBA = derive2 { name="track2KBA"; version="1.0.1"; sha256="0bb3bfv5fz551vz78jqixjzlkzisszw2l6z8hv1n86j57r7y7mra"; depends=[adehabitatHR dplyr foreach geosphere ggplot2 lubridate magrittr maptools purrr raster rlang sf sp tidyr]; }; + track2KBA = derive2 { name="track2KBA"; version="1.0.2"; sha256="19s2ny78fvgd9ywcill5769147mfrzmgh7mk4c1yv2anzhgdldjx"; depends=[adehabitatHR dplyr foreach geosphere ggplot2 lubridate magrittr maps maptools Matching move purrr raster rgdal rgeos rlang sf sp tidyr]; }; trackdem = derive2 { name="trackdem"; version="0.6"; sha256="069nl1i73ayjnlsds4dnz6w4n765jijimgz20n9az7r0irvaddhi"; depends=[MASS neuralnet png raster Rcpp RcppArmadillo shiny]; }; trackdf = derive2 { name="trackdf"; version="0.2.2"; sha256="110m7dmciyqbcb69sxi02h5djnf098wzfr84d6yppyc73a81989y"; depends=[data_table lubridate sp tibble]; }; trackdown = derive2 { name="trackdown"; version="1.1.1"; sha256="1l8mqdfpdf25vyibxqcqhyip6aqllb9riz2v6w4k1rfc8b9dl07f"; depends=[cli googledrive rmarkdown]; }; @@ -18122,25 +17736,23 @@ in with self; { tradestatistics = derive2 { name="tradestatistics"; version="3.0.2"; sha256="18v9iq588fp1w8p72an51dargqa7vcgaln8wiz9d2a0sjhq0gxxk"; depends=[crul data_table digest jsonlite memoise]; }; trafo = derive2 { name="trafo"; version="1.0.1"; sha256="0gq3snjpkw0ncny7pkfi686qkgdhd8id73jxjk3chhqf5mzrrsbc"; depends=[FNN lmtest moments pryr]; }; trainR = derive2 { name="trainR"; version="0.0.1"; sha256="0wmxhw8yxkxpw08jma3r0zy7dhsrkbh5wjvd3izp5gf9dn9533cd"; depends=[dplyr glue lubridate magrittr purrr RCurl stringr tibble tidyr usethis xml2]; }; - traineR = derive2 { name="traineR"; version="1.6.3"; sha256="0yky04b4skj28q8jdz7f3lphfmibly89q2xbqmlr2cp1d2qiw6h4"; depends=[ada adabag dplyr dummies e1071 ggplot2 glmnet glue kknn MASS neuralnet nnet randomForest ROCR rpart scales stringr xgboost]; }; + traineR = derive2 { name="traineR"; version="1.7.4"; sha256="11p6cdpg8wvzyhdw8lvr2kvxywf5iiyiim9xkx13ahngazrbx9ds"; depends=[ada adabag dplyr e1071 ggplot2 glmnet kknn knitr MASS neuralnet nnet randomForest rmarkdown ROCR rpart rpart_plot stringr xgboost]; }; traipse = derive2 { name="traipse"; version="0.2.5"; sha256="1gqpqnf9pi5s90m0h9i1zl9k9g38npnhq3hhzz0kjga979jdqkyw"; depends=[geodist geosphere magrittr]; }; - traitdataform = derive2 { name="traitdataform"; version="0.6.7"; sha256="1p5m480k8da4k091jiryqry0zwg8kw3s1cvvpgqjmjkz3v11dxsd"; depends=[curl data_table getPass plyr RCurl reshape2 suppdata taxize units XML]; }; traits = derive2 { name="traits"; version="0.5.0"; sha256="04s2523wkbjqxpwllvcy7ikyfri5gldgnynjswsxdy0k945wacvz"; depends=[crul data_table hoardr httr jsonlite readr rvest taxize tibble xml2]; }; traj = derive2 { name="traj"; version="1.2"; sha256="0mq6xdbxjqjivxyy7cwaghwmnmb5pccrah44nmalssc6qfrgys4n"; depends=[cluster GPArotation NbClust pastecs psych]; }; trajeR = derive2 { name="trajeR"; version="0.9.0.5"; sha256="1zy3hg1m1a5dpx494mlb72vfpng5892dcginv6rwxc2c1ggv6z86"; depends=[capushe MASS minpack_lm numDeriv Rcpp RcppArmadillo ucminf]; }; trajectories = derive2 { name="trajectories"; version="0.2-3"; sha256="1k1fyjyng9mi3k5v6bpbv3vkqr7c9zjp4yiyynb3rjxqpn1fxx7k"; depends=[lattice sp spacetime zoo]; }; trajr = derive2 { name="trajr"; version="1.4.0"; sha256="092hx27b6d0vy1pvmga1z3b245aa9gn9aw3hszbhhkkic5zfpgbq"; depends=[plotrix signal]; }; tram = derive2 { name="tram"; version="0.7-0"; sha256="00414wq7lnnhv90av673ag0jsgwfx4rbfj8m9aqac0v7pnk12qsh"; depends=[basefun Formula Matrix mlt multcomp sandwich survival variables]; }; - tramME = derive2 { name="tramME"; version="0.1.3"; sha256="0gqvk15xk2wl12vlmshj9sz0qvih03wrbs700hkd1ifjlm2kjlnl"; depends=[alabama basefun coneproj lme4 MASS Matrix mlt mvtnorm nlme numDeriv RcppEigen TMB tram variables]; }; + tramME = derive2 { name="tramME"; version="1.0.1"; sha256="0p7v6fd7pqjff9qjafjh6rkp9vp3pk9g46hafj1xdi4mg7n6x7h6"; depends=[alabama basefun coneproj lme4 MASS Matrix mgcv mlt nlme numDeriv RcppEigen TMB tram variables]; }; tramnet = derive2 { name="tramnet"; version="0.0-6"; sha256="034ij8ir5v31n22pig7v6qizmyhpar1mklifvcskg0ydmpy7qkj4"; depends=[basefun CVXR lhs mlr mlrMBO mlt ParamHelpers sandwich smoof tram]; }; trampoline = derive2 { name="trampoline"; version="0.1.1"; sha256="05inq5j8gvnpww6z21dzc57vilsm4gx3m274fpsamp54q85mi68s"; depends=[coro fastmap rlang]; }; tranSurv = derive2 { name="tranSurv"; version="1.2.2"; sha256="17rvzjcn76z5niw1jappiadbkf66a9x0m7p3251lgb7qrnvpx3gk"; depends=[rootSolve SQUAREM survival truncSP]; }; transcribeR = derive2 { name="transcribeR"; version="0.0.0"; sha256="0y2kxg2da71i962fhsjxsr2ic3b31fmffhj3gg97b0nykfpcviib"; depends=[httr]; }; - transfR = derive2 { name="transfR"; version="0.1.1"; sha256="1pdacv0w5rf7vn6pbyydrjj1v6w8m36v1jaghb28xv3gn27308iy"; depends=[doParallel foreach Rdpack sf stars units]; }; - transforEmotion = derive2 { name="transforEmotion"; version="0.1.0"; sha256="1mzbv1hj78nhm61liqwca9s5pa4rm027zzg4r5g52z7ks9ca0z0c"; depends=[dplyr LSAfun osfr pbapply remotes reticulate]; }; + transfR = derive2 { name="transfR"; version="0.1.2"; sha256="1yr0w7qxwxs35kbsw6039x6m5695m53jwh0zy38h29zikyzzz5w4"; depends=[doParallel foreach Rdpack sf stars units]; }; + transforEmotion = derive2 { name="transforEmotion"; version="0.1.1"; sha256="0lnmgbsh26mazx0g1s0jxg3jk1a6vw3bsaw07viv9kx3rdf6wc46"; depends=[dplyr LSAfun osfr pbapply remotes reticulate]; }; transformmos = derive2 { name="transformmos"; version="0.1.0"; sha256="1hsp399cj6cnsysb4hm4ra075qm2fxkjhyq16m3nai51fvzkak0p"; depends=[]; }; transformr = derive2 { name="transformr"; version="0.1.3"; sha256="1dn6h8i7vli2zv4408djyg74j9fv9sjrqf75hx9dh7qnj352wf69"; depends=[lpSolve Rcpp rlang sf tweenr]; }; - translateR = derive2 { name="translateR"; version="1.0"; sha256="11kh9hjpsj5rfmzybnh345n1gzb0pdksrjp04nzlv948yc0mg5gm"; depends=[httr RCurl RJSONIO textcat]; }; translation_ko = derive2 { name="translation.ko"; version="0.0.1.5.2"; sha256="1w5xibg4znhd39f3i0vsqckp6iia43nblqxnzgj0ny6s7zmdq1wd"; depends=[]; }; transmdl = derive2 { name="transmdl"; version="0.1.0"; sha256="16lvcjwb7hq4a4925kqnas7c4xqw3gpbad3fcghp0qm4whyig8dg"; depends=[Rcpp RcppEigen statmod survival]; }; transmem = derive2 { name="transmem"; version="0.1.1"; sha256="1a3c5ddmh9k4f80rbk363s7rkx30qhk9ssmf7xg7rr0lwxphahf3"; depends=[cmna ggformula ggplot2 plot3D]; }; @@ -18196,7 +17808,7 @@ in with self; { trimcluster = derive2 { name="trimcluster"; version="0.1-5"; sha256="12siv8yx8dcavsz8jk96lwscbj257ar8jpaxksl2zb06987g4fcj"; depends=[]; }; trimetStops = derive2 { name="trimetStops"; version="0.1.0"; sha256="068mya6zqiacs3nznwmz17srn90ar6wjnpkgqsznzmigzy7c4idk"; depends=[]; }; trimmer = derive2 { name="trimmer"; version="0.8.1"; sha256="0hn5pignj5clg7wb3xd0mh9jqc480wqxxymzaas68lxzi6p5mng9"; depends=[cli crayon data_table pryr]; }; - trimr = derive2 { name="trimr"; version="1.0.1"; sha256="0gcn18nwxmax9c35is0nldyh74cw8rg3gj60cixzs9qjnpb9xx3d"; depends=[]; }; + trimr = derive2 { name="trimr"; version="1.1.1"; sha256="12z194g67b8g4vv1667hzhmns9mhw93icvdkxf2d45wfyjfdvsvv"; depends=[dplyr]; }; trinROC = derive2 { name="trinROC"; version="0.5.1"; sha256="1mx7m50afwjr55svpf4ckk9rfc1qkk4h8n08ghghfaa6vc2ysz1y"; depends=[ggplot2 gridExtra rgl]; }; trioGxE = derive2 { name="trioGxE"; version="0.1-1"; sha256="1ra86l3i7fhb6nsy8izixyvm6z23shv7fcjmnnpil54995j15ax4"; depends=[gtools mgcv msm]; }; trip = derive2 { name="trip"; version="1.8.5"; sha256="160dp9ji8j4w2fwh62l6cp485iy5n5is451rbgf28d5q0prd912c"; depends=[crsmeta dplyr geodist glue MASS raster reproj rlang sp spatstat_core spatstat_geom traipse viridis]; }; @@ -18207,7 +17819,6 @@ in with self; { triversity = derive2 { name="triversity"; version="1.0"; sha256="1bar2bpy8jvj91jmzzdwy6rlvirsbxrzqnx4r825irqhc69gc53r"; depends=[data_tree Matrix]; }; troopdata = derive2 { name="troopdata"; version="0.1.5"; sha256="0s86j75jzinrwn1p5z9l13srzhy55mj3hcnbjr89ia1m6kgih6dc"; depends=[dplyr magrittr rlang tibble]; }; tropAlgebra = derive2 { name="tropAlgebra"; version="0.1.1"; sha256="1idvhxhw2f6z8iq0nfdj6jmzy8913vid84rvln6rx2dkzw3s9wnl"; depends=[]; }; - tropicalSparse = derive2 { name="tropicalSparse"; version="0.1.0"; sha256="1ay6i3pzz5lpvznxqln31mijp86p6z0df7rvp0gm4lxvn294m7f8"; depends=[]; }; trotter = derive2 { name="trotter"; version="0.6"; sha256="0i8r2f2klkkfnjm7jhvga3gx6m7r97pd73d88004jzlm9ficspgy"; depends=[]; }; trtf = derive2 { name="trtf"; version="0.4-0"; sha256="1475qlhbgi56fr3nwqkmspqxbfrqxcr1wk1mbm9mj2ph9zlrxphw"; depends=[Formula libcoin mlt partykit sandwich tram variables]; }; truelies = derive2 { name="truelies"; version="0.2.0"; sha256="1qxzw7x7xgp9x6klnq6jv0fl8al2l24br2sd59r5gq076gkqc47k"; depends=[hdrcde]; }; @@ -18215,7 +17826,6 @@ in with self; { truh = derive2 { name="truh"; version="1.0.0"; sha256="0acsyzm6rpmzyq8pg33c631hi4xir49gqxbpshcrr6i2v3q6k14j"; depends=[cluster doParallel foreach fpc iterators Rfast]; }; truncSP = derive2 { name="truncSP"; version="1.2.2"; sha256="1hdi518j3sg9273g01l1jqlmqya3ppim82ma7zakwqpmsjmzw18q"; depends=[boot truncreg]; }; truncdist = derive2 { name="truncdist"; version="1.0-2"; sha256="02ihw4ixhadwr3sqm6r264i8vpcaz8pn69vkzabd8fwqvn5vcj5q"; depends=[evd]; }; - truncgof = derive2 { name="truncgof"; version="0.6-0"; sha256="0b499i9zjwvva5jfl9fj02jjrgy8myxqfjwa0cjg0jrpgxczgwg8"; depends=[MASS]; }; truncnorm = derive2 { name="truncnorm"; version="1.0-8"; sha256="0zn88wdd58223kibk085rhsikl4yhlrwiyq109hzjg06hy6lwmj9"; depends=[]; }; truncreg = derive2 { name="truncreg"; version="0.2-5"; sha256="1scbjh5k1b8cjjavax08grlxdfs75s63dss0ifpz4d0axc4nm3iy"; depends=[maxLik]; }; trust = derive2 { name="trust"; version="0.1-8"; sha256="1b6wsx4vybr5952ii3ska6jbcb3654iibz83n645khxfca5k8blm"; depends=[]; }; @@ -18226,14 +17836,14 @@ in with self; { ts_extend = derive2 { name="ts.extend"; version="0.1.1"; sha256="03b358nywx0zynb6006886mzvz1mbbaim6b5m641drklh6k0l6r1"; depends=[]; }; tsBSS = derive2 { name="tsBSS"; version="1.0.0"; sha256="04nsbifc6zkilqifj6iwc0vf2z84y8wcbf8pndgkzi039kk6c385"; depends=[boot BSSprep forecast ICtest JADE Rcpp RcppArmadillo xts zoo]; }; tsDyn = derive2 { name="tsDyn"; version="11.0.2"; sha256="0dplrl4vknha2aa0h3vg0sivn2dm0h23my6y2gdghhplvzy0qaa4"; depends=[foreach forecast MASS Matrix mgcv mnormt nnet tseries tseriesChaos urca vars]; }; - tsModel = derive2 { name="tsModel"; version="0.6"; sha256="0mkmhzj4g38ngzfcfx0zsiqpxs2qpw82kgmm1b8gl671s4rz00zs"; depends=[]; }; + tsModel = derive2 { name="tsModel"; version="0.6-1"; sha256="16cyq4xisrp4i8bd8wayzzk08ws0rfq9zrafphb9cssx50gbqb8q"; depends=[]; }; tsPI = derive2 { name="tsPI"; version="1.0.3"; sha256="00p7275iq8qn6c6dpqjr5s9fzc0a6njqqi9gvqnh5s9lfx9mbk1v"; depends=[KFAS]; }; tsSelect = derive2 { name="tsSelect"; version="0.1.8"; sha256="0ysijzhhwaj5n7h50jacshnla6d0h61q0f6lj19ic0lwvlz4yazy"; depends=[forecast]; }; tsallisqexp = derive2 { name="tsallisqexp"; version="0.9-4"; sha256="07ymkrik1vwblcj5i0crihbrrxkrn8xjkap3lrzxy4vidgqalw3f"; depends=[]; }; tsapp = derive2 { name="tsapp"; version="1.0.4"; sha256="1x3f10rdg3ihq5cx6w1zyz3irv1wsgx6admz5qv3zwwlk0z6cwpx"; depends=[fftwtools hdm Matrix vars]; }; tsbox = derive2 { name="tsbox"; version="0.3.1"; sha256="0vm6w6y9j2xgzappqjv6p40nl0lrbx3jzqjya9ahhapaklhb1hx3"; depends=[anytime data_table]; }; tsc = derive2 { name="tsc"; version="1.0-3"; sha256="1acsdkxizlkix1sskwqv2a80rshw6f14zvcsjhrmmdfd4bmwh36y"; depends=[]; }; - tscopula = derive2 { name="tscopula"; version="0.2.1"; sha256="01zxwncr5azprcqm801qsa3v0c5hffycm4rxkqbxkaz11wvijhj3"; depends=[arfima FitAR FKF ltsa Matrix rvinecopulib xts zoo]; }; + tscopula = derive2 { name="tscopula"; version="0.3.1"; sha256="0cbc90mzdl9rzf9p75whxqf5j2al5w8zacycs800kylkgv6cyanc"; depends=[arfima FKF kdensity ltsa Matrix rvinecopulib xts zoo]; }; tscount = derive2 { name="tscount"; version="1.4.3"; sha256="087ncxy1q91yc5rr15d5h6m7kaqhw8yy5fbm22rkzp9dg2fhbzi3"; depends=[ltsa]; }; tsdb = derive2 { name="tsdb"; version="1.0-0"; sha256="1vlvigcvg4zpw7kl42kzbcllamlqvblw7ipfhvq04an4rq924pvf"; depends=[datetimeutils fastmatch zoo]; }; tsdecomp = derive2 { name="tsdecomp"; version="0.2"; sha256="1wy37gjp49dr60s4zhwv19iv3mzr1fjz5yilqmqgy78j5d45ns15"; depends=[]; }; @@ -18241,7 +17851,7 @@ in with self; { tsdisagg2 = derive2 { name="tsdisagg2"; version="0.1.0"; sha256="1vjypf9d4rdprpgxfsgpccn412kvar59v341ridq2hcdp7hfb70s"; depends=[]; }; tsensembler = derive2 { name="tsensembler"; version="0.1.0"; sha256="0amb3dn96hdgy5a0j6s43mf82cdjwbz8dhz3yrjlr07nknxzirzi"; depends=[Cubist doParallel earth foreach gbm glmnet kernlab monmlp pls ranger RcppRoll softImpute xgboost xts zoo]; }; tsentiment = derive2 { name="tsentiment"; version="1.0.4"; sha256="173m4ry58rz5cgffrwzxd9wr22w2ziny82zzby958w6vpyysdsc0"; depends=[dplyr ggplot2 httr progress reshape2 stringi syuzhet tibble tidytext wordcloud wordcloud2]; }; - tseries = derive2 { name="tseries"; version="0.10-50"; sha256="16654v691jqpgiisz442h9znlxgj96c9gvhk3pgmm48bfsxs6iqw"; depends=[quadprog quantmod zoo]; }; + tseries = derive2 { name="tseries"; version="0.10-51"; sha256="0zr09ikaz96djcvnjbr8ah6waqzjy06f4yd4isshlwc391q20px5"; depends=[quadprog quantmod zoo]; }; tseriesChaos = derive2 { name="tseriesChaos"; version="0.1-13.1"; sha256="0qfrrzd0h8n9zp7wj5fl88wkiv22fs5zy8x509g316j0avm5zjr3"; depends=[deSolve]; }; tseriesEntropy = derive2 { name="tseriesEntropy"; version="0.6-0"; sha256="04clfkpkiy5p5nxcq59c7f4v1llj1d95lvck23h1px50lvb993fv"; depends=[cubature ks]; }; tsfeatures = derive2 { name="tsfeatures"; version="1.0.2"; sha256="1zi7p7gdd9bg6rpdin88rq9qi43cpk663xmvffa7d5p1w45831kd"; depends=[forecast fracdiff furrr future purrr RcppRoll tibble tseries urca]; }; @@ -18253,7 +17863,6 @@ in with self; { tsibble = derive2 { name="tsibble"; version="1.1.1"; sha256="172xb358q3fcfs9rdapllqwmw6yj6qx93bc9br6kfd437sk86rx6"; depends=[anytime dplyr ellipsis generics lifecycle lubridate rlang tibble tidyselect vctrs]; }; tsibbledata = derive2 { name="tsibbledata"; version="0.4.0"; sha256="0f9gi8h49xc4xd38fg0s26p4xrkpxr4qfdfapk7p1vfszb31ihjd"; depends=[rappdirs tsibble]; }; tsibbletalk = derive2 { name="tsibbletalk"; version="0.1.0"; sha256="14j1gpimvlz9cgxgl1n68ngkqx4w2ai92782ifrpvc57lqy9cs7v"; depends=[crosstalk dendextend dplyr glue lubridate plotly R6 rlang shiny tsibble vctrs]; }; - tsintermittent = derive2 { name="tsintermittent"; version="1.9"; sha256="1mrb6yrsjwj6j40n97sgg42ddvwhjnaiq9k7ka249bbq01gf2975"; depends=[MAPA]; }; tsmp = derive2 { name="tsmp"; version="0.4.14"; sha256="1ahqdizygbs49xbgn35fdb5drxwyx2z9ima4fm83aqwaan7wrrja"; depends=[audio checkmate doSNOW foreach magrittr progress Rcpp RcppParallel RJSONIO]; }; tsna = derive2 { name="tsna"; version="0.3.5"; sha256="0rgzdf60j8ahi0zgypkj7wd7y7ghrkymc48kjfyz9w3ksmrzgqjf"; depends=[network networkDynamic statnet_common]; }; tsne = derive2 { name="tsne"; version="0.1-3.1"; sha256="126q6ha25wx9mdsfngzkyp8j2fj81ri1knjdq1iyvwx3q1dwdaql"; depends=[]; }; @@ -18299,11 +17908,11 @@ in with self; { tutorial = derive2 { name="tutorial"; version="0.4.3"; sha256="0sxdlpw0w4azlaxdlk36ycrric6pbj2zi4nyv26pgsp0cr1hrx6r"; depends=[base64enc knitr markdown rjson]; }; tvR = derive2 { name="tvR"; version="0.3.2"; sha256="1i20z09f714fyn3ipcn9i5g4dx7cyjfkyjqzyqzqapkg0m9ny91m"; depends=[Matrix Rcpp RcppArmadillo Rdpack]; }; tvReg = derive2 { name="tvReg"; version="0.5.6"; sha256="04fxpkbq76lz5l1q83yr306d8lcjxh3c1wlpqzhvx8iqn0w6qbhx"; depends=[bvarsv MASS Matrix plm systemfit vars]; }; - tvd = derive2 { name="tvd"; version="0.1.0"; sha256="07al7gpm81a16q5nppsyc5rhv6zzkcvw72isx955b1q189v073aw"; depends=[Rcpp]; }; tvem = derive2 { name="tvem"; version="1.3.1"; sha256="1hrjl5kbp0wx7a4aa8bbvf5sdrxcvxsf3318ckgl85w923i8a44k"; depends=[mgcv]; }; tvgarch = derive2 { name="tvgarch"; version="2.2"; sha256="14pswli9yfc21vdrgnhyp7caprvjh7vi7lj2wpm5rl43kc0j5c27"; depends=[garchx hier_part numDeriv zoo]; }; tvgeom = derive2 { name="tvgeom"; version="1.0.1"; sha256="1lr2vqgj5jfhzavwd43wcchhbicmf4dqjvyf66rvnjkw3jaig8dm"; depends=[]; }; tvm = derive2 { name="tvm"; version="0.5.0"; sha256="1disznln4xgkr9q6sj978nadbwg43xv28fq3r3zyy6icg4x9h6gs"; depends=[ggplot2 reshape2 scales]; }; + tvmComp = derive2 { name="tvmComp"; version="1.0.2"; sha256="1q5c3ahdjjz4h19pwq0dpasv87mzbyqs0hadlfx7mpmncdgyqcqq"; depends=[Rdpack]; }; tvmediation = derive2 { name="tvmediation"; version="1.0.0"; sha256="16djg3ibn1i68lzwby8242qa90347iq1i9ha4nyzacaf7mjd4ysl"; depends=[dplyr ggplot2 kedd locpol]; }; tvthemes = derive2 { name="tvthemes"; version="1.3.0"; sha256="1xpj6jxiqynz8vs5lfymf5hlywm8zpgcycxnlhpvl9g6wfn80ysw"; depends=[extrafont ggplot2 magick scales]; }; twang = derive2 { name="twang"; version="2.5"; sha256="1raczkxbkikwx9gi4p8nzgazqxa41ilpqvfjc07nwkvyqlkmadgw"; depends=[data_table gbm ggplot2 lattice latticeExtra MatrixModels survey xgboost xtable]; }; @@ -18320,7 +17929,7 @@ in with self; { twitteR = derive2 { name="twitteR"; version="1.1.9"; sha256="1hh055aqb8iddk9bdqw82r3df9rwjqsg5a0d2i0rs1bry8z4kzbr"; depends=[bit64 DBI httr rjson]; }; twitterwidget = derive2 { name="twitterwidget"; version="0.1.1"; sha256="1dlhydhy69284gg3jsxwa6h8cp1rlkg1j8h8z1fjz4fyy1p5xrpv"; depends=[htmlwidgets]; }; twl = derive2 { name="twl"; version="1.0"; sha256="0n2r40ddsr5zpzi92k7f0lvq78k5cmfbqzjxvr78hwq6j13dhar3"; depends=[corrplot data_table MCMCpack Rfast]; }; - twn = derive2 { name="twn"; version="0.2.1"; sha256="1lw2dvcchx7ldxjibw4i48vpnfqk6z1cqb86ilfxhdm6baply8g0"; depends=[crayon dplyr rlang stringr tibble]; }; + twn = derive2 { name="twn"; version="0.2.2"; sha256="0s1yn5jvcb2vds6r3f3xsfnc01lzljljy606kf22lsfqcrrrk5vr"; depends=[crayon dplyr rlang stringr tibble]; }; twosamples = derive2 { name="twosamples"; version="1.1.1"; sha256="0c2hk49zysjgkgm3pv9j1gnpg5hs5icdzn40ihyqj8aziynkripp"; depends=[Rcpp]; }; twosigma = derive2 { name="twosigma"; version="1.0.2"; sha256="0b73qcna55gmfxz1lzd987j28m7g8642s9wgzpndx3850q61yfli"; depends=[doParallel glmmTMB multcomp pbapply pscl]; }; twostageTE = derive2 { name="twostageTE"; version="1.3"; sha256="0mkxs3lmzja51zdrf5himhwcdygpj6czhdd2bydakm26kvw7znwr"; depends=[isotone]; }; @@ -18343,7 +17952,6 @@ in with self; { uavRmp = derive2 { name="uavRmp"; version="0.5.7"; sha256="04dv1a72b0v8lgdwl10n96953gfal6pmbbih45szdvk4zhks030j"; depends=[brew data_table exifr geosphere jsonlite link2GI log4r raster rgdal rgeos rlang rlist sf sp zoo]; }; ubiquity = derive2 { name="ubiquity"; version="2.0.0"; sha256="1zjjwpl8zkpr4zvrhsbsj6vpiwy08vs2sw1rpx7aq940v37dvmbz"; depends=[deSolve digest doParallel dplyr flextable foreach ggplot2 knitr magrittr MASS onbrand optimx PKNCA pso readxl rhandsontable rmarkdown scales shiny stringr]; }; ubms = derive2 { name="ubms"; version="1.1.0"; sha256="016rdjba3h2hm6ps4jrnqzy1hwm0nmn3yq922dbfw8396qvmr2zf"; depends=[BH ggplot2 gridExtra lme4 loo Matrix pbapply Rcpp RcppArmadillo RcppEigen RcppParallel RSpectra rstan rstantools StanHeaders unmarked]; }; - ucbthesis = derive2 { name="ucbthesis"; version="1.0"; sha256="0l855if3a7862lxlnkbx52qa617mby634sbb2gkprj21rwd7lcbp"; depends=[knitr stringr]; }; uchardet = derive2 { name="uchardet"; version="1.1.0"; sha256="1dnvi45npk7l7sqbv3c1mrg0m7vrrp7iya9kjndcg9x3h0iial9z"; depends=[]; }; ucie = derive2 { name="ucie"; version="1.0.1"; sha256="1bi55zw2niv8qixsihwjibfi3k22kvsbi8gcbwxwh93l1mcgicx9"; depends=[colorspace dplyr geometry pracma ptinpoly remotes rgl]; }; uclust = derive2 { name="uclust"; version="1.0.0"; sha256="10i78fc81sy635mi8nn1gmryvcbqq7f99ws6byqlnhwyw79qmvb1"; depends=[dendextend robcor]; }; @@ -18369,7 +17977,7 @@ in with self; { ump = derive2 { name="ump"; version="0.5-8"; sha256="1sg226caq9y41cwl7wr5s9z3bpq2j5p6rj6fy2pasbzimgzw0byx"; depends=[]; }; umx = derive2 { name="umx"; version="4.10.50"; sha256="11mhry3hv7fhs5lwgww3g6200knw3fgah42j08glk81k9braswzm"; depends=[cowplot DiagrammeR DiagrammeRsvg ggplot2 kableExtra knitr lavaan MASS Matrix MuMIn mvtnorm nlme OpenMx polycor R2HTML RCurl rsvg scales tibble xtable]; }; unbalanced = derive2 { name="unbalanced"; version="2.0"; sha256="18hy9nnq42s1viij0a5i9wzrrfmmbf7y3yzjzymz2wnrx4f2pqwv"; depends=[doParallel FNN foreach mlr RANN]; }; - unbalhaar = derive2 { name="unbalhaar"; version="2.0"; sha256="0v6bkin1cakwl9lmv49s0jnccl9d6vdslbi1a7kfvmr5dgy760hs"; depends=[]; }; + unbalhaar = derive2 { name="unbalhaar"; version="2.1"; sha256="0fgnvl9ammawgm5nf2icw64yzivqw7sl07dpvrsb5rypvrm8d040"; depends=[]; }; uncertainty = derive2 { name="uncertainty"; version="0.2.0"; sha256="1mq14ny7l3gy3wjsqijnm37azavyapxszjnckd861h4hgcpdcdjz"; depends=[mvtnorm triangle]; }; uncmbb = derive2 { name="uncmbb"; version="0.2.2"; sha256="0szlz52p0ywl8526mhm0i0pk1vx72kc3474cx0w47xxig83a1j9b"; depends=[dplyr rlang]; }; uncorbets = derive2 { name="uncorbets"; version="0.1.1"; sha256="19awl797accbqv1l0g1inrxvfvvkrskfv3j9czq2p465ac4qhbgw"; depends=[assertthat NlcOptim]; }; @@ -18379,9 +17987,9 @@ in with self; { unheadr = derive2 { name="unheadr"; version="0.3.2"; sha256="1fj8108fifjswl8jx4f8jd59g4sqhryhsci978ysn72z663nflxl"; depends=[dplyr forcats magrittr readxl rlang stringr tibble tidyr tidyxl]; }; uni_survival_tree = derive2 { name="uni.survival.tree"; version="1.5"; sha256="1brkppsk7likpffzz0ykhqxw99qin57zzcjcib2fcdn3n8gpwq7w"; depends=[compound_Cox survival]; }; uniReg = derive2 { name="uniReg"; version="1.1"; sha256="0wjc7pgaisvk26j7grxp2ypsabb5my9wg6c9i5w9zhh5jdx1fdab"; depends=[DoseFinding MASS mvtnorm quadprog SEL]; }; - uniah = derive2 { name="uniah"; version="1.0"; sha256="19zwy33gwa749i81mi9h05k8k3l4xbbln3k6q70fa7ic5lqbbdzj"; depends=[ahaz Iso survival]; }; unifDAG = derive2 { name="unifDAG"; version="1.0.3"; sha256="052qjrnj04imhj6i62k8jdx9rs8r70n0qrmd2z45x4fimn5py6j5"; depends=[gmp graph]; }; unifed = derive2 { name="unifed"; version="1.1.6"; sha256="0wy2hasgkzw08l50qq30wb62i1q4skc3zccipv8pm911qlldk3sr"; depends=[]; }; + unifir = derive2 { name="unifir"; version="0.2.1"; sha256="06srvcwzkph0ksijqifxc61lizlckxmf4p63zvfciz5brzmq6ns6"; depends=[glue proceduralnames R6]; }; uniformly = derive2 { name="uniformly"; version="0.2.0"; sha256="1xfwnklzmz72kp5qsb5zh3p6lwngpiaw5b4drjd41h9xvxdb3dyd"; depends=[pgnorm]; }; uniftest = derive2 { name="uniftest"; version="1.1"; sha256="0a37m7l3lc6rznx10w9h9krnn5paim2i2wvw47ckwag7bv0d4pm4"; depends=[orthopolynom]; }; unikn = derive2 { name="unikn"; version="0.4.0"; sha256="0pqkb48rsjl9zny0y1plcnfvzaaqy2cwpgii2pdhh4rfg2ps2n4l"; depends=[ggplot2]; }; @@ -18399,7 +18007,7 @@ in with self; { universals = derive2 { name="universals"; version="0.0.4"; sha256="1dx7xh5l2dkamskpwfc9qsjf7df1fj54ph6s3sxhnhdbppzckd4d"; depends=[]; }; unix = derive2 { name="unix"; version="1.5.4"; sha256="0wj85h5lljzw4qj4ry79y05gd6vakqff8lzw9f70154i79jq74hl"; depends=[]; }; unjoin = derive2 { name="unjoin"; version="0.1.0"; sha256="1hp9fxkb59z0cpnwxpaf5whglrljg2nrmsygdb98klxsama9gr5z"; depends=[dplyr rlang tibble]; }; - unmarked = derive2 { name="unmarked"; version="1.1.1"; sha256="1zabfsij6kjxzy7qj2h2x21kd24qm7kfs98095by54aadhwlyis8"; depends=[lattice lme4 MASS Matrix plyr raster Rcpp RcppArmadillo TMB]; }; + unmarked = derive2 { name="unmarked"; version="1.2.5"; sha256="1zl7gyijgpgwhxagla7ck9a8w7rfrp9h1ny3nsgad9rh5ps4jkx5"; depends=[lattice lme4 MASS Matrix pbapply plyr Rcpp RcppArmadillo RcppEigen TMB]; }; unnest = derive2 { name="unnest"; version="0.0.3"; sha256="1as245gzviq3394g36q82m1cv2rdrwjlm3icd18lcz6sl13wggdy"; depends=[]; }; unpivotr = derive2 { name="unpivotr"; version="0.6.2"; sha256="1paqx2jn8gh4nd4zm8iwxpf38znzwwqli62ww7f3k5vwkf34r078"; depends=[cellranger dplyr forcats magrittr pillar purrr rlang tibble tidyr tidyselect xml2]; }; unrepx = derive2 { name="unrepx"; version="1.0"; sha256="1dzvwpza60y9p7kz1f0bm20wid5jyxx9pma4w41az9shq5kkr0aj"; depends=[]; }; @@ -18410,7 +18018,7 @@ in with self; { unusualprofile = derive2 { name="unusualprofile"; version="0.1.0"; sha256="0dasknh8hwbvc530d8i0xfizqxygrlz3w2bdnsgdd9sf84flqajl"; depends=[dplyr ggnormalviolin ggplot2 lavaan lifecycle magrittr patchwork purrr ragg rlang scales simstandard tibble tidyr]; }; unvotes = derive2 { name="unvotes"; version="0.3.0"; sha256="1vfyvwqfbxp29x2a0sqng6l5pkp2hc3hadp95ysnpannnsd6x0jw"; depends=[]; }; updog = derive2 { name="updog"; version="2.1.2"; sha256="0v8a5vlyv1gabjkxj5fnx05pfm1fqf549895gx6gsyzy2iz1652g"; depends=[assertthat doFuture doRNG foreach future ggplot2 ggthemes iterators Rcpp RcppArmadillo reshape2]; }; - upsetjs = derive2 { name="upsetjs"; version="1.10.11"; sha256="0wmd0hxa51d1aw7gglnkzcn8famrnrybypdaml7wi6yxgjy4wa5s"; depends=[htmlwidgets magrittr]; }; + upsetjs = derive2 { name="upsetjs"; version="1.11.0"; sha256="16znq30bfb8ag3dwcvyzf7vb2rxxmac2pya1w2j8i49cyx0i6wzj"; depends=[htmlwidgets magrittr]; }; upstartr = derive2 { name="upstartr"; version="0.1.1"; sha256="09xzj423v0x4qvqfgyqpxyg63p8f1n5ppjc8swpyv1747ll5zmg8"; depends=[beepr crayon dplyr ggplot2 glue here knitr librarian magrittr openxlsx purrr readr readxl rmarkdown scales sf stringr textclean tgamtheme tidytext]; }; uptasticsearch = derive2 { name="uptasticsearch"; version="0.4.0"; sha256="19sf3zdj424pz4ms0xg4asplf2bczvhl8p22y13jna1g51xyv92a"; depends=[assertthat data_table futile_logger httr jsonlite purrr stringr uuid]; }; uptimeRobot = derive2 { name="uptimeRobot"; version="1.0.0"; sha256="1sbr0vs6jqcyxjbs7q45bsfdnp3bc59phw0h3fwajqq1cxjgzdww"; depends=[plyr RCurl rjson]; }; @@ -18439,6 +18047,7 @@ in with self; { usl = derive2 { name="usl"; version="3.0.0"; sha256="1ahry485kpzfc0pzi4zm039d5mpv1jycmhdpn0n0zn0drcrlhw0g"; depends=[nlsr]; }; usmap = derive2 { name="usmap"; version="0.6.0"; sha256="1jdn9rl6kkfmr9d6wrg1673nr7xh5h14ynv2mx64xcn581c9jzis"; depends=[usmapdata]; }; usmapdata = derive2 { name="usmapdata"; version="0.1.0"; sha256="13a4bj6ixqzfwm60r2c3i9zy96mr2hk77n720zs5i0i16acfnxav"; depends=[]; }; + ustfd = derive2 { name="ustfd"; version="0.1.0"; sha256="1g7bqmdqfvrafhvywlxszcyvapihawa586g2qj7bfd6x72x5fyvx"; depends=[dplyr httr lubridate purrr readr]; }; ustyc = derive2 { name="ustyc"; version="1.0.0"; sha256="1267bng2dz3229cbbq47w22i2yq2ydpw26ngqa1nbi3ma6hwqsv4"; depends=[plyr XML]; }; utc = derive2 { name="utc"; version="0.1.5"; sha256="1lhm5rhr78cxp3cz5n6j2zkhjphj7csk026xvvhkjqdi39rrq6i4"; depends=[]; }; utf8 = derive2 { name="utf8"; version="1.2.2"; sha256="1x6qg19z4qih9lk3mvnmx0vailm1khp5lylw4hlwz6rssj3yw6m7"; depends=[]; }; @@ -18451,7 +18060,7 @@ in with self; { utilsIPEA = derive2 { name="utilsIPEA"; version="0.0.6"; sha256="07avc0j6qkzqmznbydn0zdg743g7g7kn2bcx5n03m3wg0fqyggr7"; depends=[data_table dplyr RCurl stringdist stringr]; }; utiml = derive2 { name="utiml"; version="0.1.7"; sha256="16l64scyipj7plwyv6whv3h040sgvzxx43jhjxyhrcdci4pqwh94"; depends=[mldr ROCR]; }; utr_annotation = derive2 { name="utr.annotation"; version="1.0.4"; sha256="0lldkd5fw86qxngjfvigmkdzynz0712wsk9p51xliqlavivvnpny"; depends=[AnnotationFilter AnnotationHub BiocGenerics biomaRt Biostrings data_table doParallel dplyr ensembldb foreach GenomicFeatures GenomicRanges IRanges keras readr rtracklayer stringr tidyr vcfR xml2]; }; - uuid = derive2 { name="uuid"; version="1.0-4"; sha256="08j3ylf49l9qslhlcxvix3mqw6hh8kxainnklv0qmwmwj6q6i5i8"; depends=[]; }; + uuid = derive2 { name="uuid"; version="1.1-0"; sha256="0bzlc2knmr338h4ykx8v8c2a1inizxafj8rh13kwii68gpp50nz7"; depends=[]; }; uwedragon = derive2 { name="uwedragon"; version="0.1.0"; sha256="00rrklym9ms74ad58cbn4xkibp8k5d12kcrnb68x7b27grvgfnqf"; depends=[gtools]; }; uwo4419 = derive2 { name="uwo4419"; version="0.3.0"; sha256="0hk5qhyarjxz7ngj5ak37vx0rak6xv0hfb4sdrsbci3kv5fqijv7"; depends=[DescTools dplyr ggplot2 gmodels haven magrittr psych RColorBrewer rio tibble tidyr]; }; uwot = derive2 { name="uwot"; version="0.1.11"; sha256="06ylzxmdh8jipbrzgqaiivd2lnqmbcva41cyvc0iyals6vqr1ksg"; depends=[dqrng FNN irlba Matrix Rcpp RcppAnnoy RcppProgress RSpectra]; }; @@ -18464,6 +18073,7 @@ in with self; { vagam = derive2 { name="vagam"; version="1.1"; sha256="1bgpf0z23yqyaz7dfmqilyqvr5v4w891027xrlr0mk9grj4srmiq"; depends=[gamm4 Matrix mgcv mvtnorm truncnorm]; }; valaddin = derive2 { name="valaddin"; version="1.0.1"; sha256="15j1zkmxf11706hrjhn6vh2h9zmlcdihrxqyxflp3kah9an0hldm"; depends=[lazyeval]; }; valection = derive2 { name="valection"; version="1.0.0"; sha256="0104zcg3cw57ksgmb321hnyv095mn3frxci9vikj1smwarpnrpzc"; depends=[testthat]; }; + valet = derive2 { name="valet"; version="0.9.0"; sha256="0xgp3rzwyshjw8s9ncpals8naja7fc2yk81abl08gh43zp294scm"; depends=[dplyr httr jsonlite magrittr purrr readr]; }; valhallr = derive2 { name="valhallr"; version="0.1.0"; sha256="1lgdcvbk5g8xq9b18aqfq434cvdcshl3b6s28sx4r3jb8fxkia26"; depends=[Cairo dplyr geojsonio ggplot2 ggspatial htmltools httr jsonlite leaflet magrittr purrr rlang sf stringr tibble tidyr]; }; validann = derive2 { name="validann"; version="1.2.1"; sha256="00c0hkjiv8n7mksx6sknb4xkkivxr1ml31k697csv4imwrk09dy5"; depends=[moments]; }; validata = derive2 { name="validata"; version="0.1.0"; sha256="01ghnkkhqgjllpwdvphcqymps7jq3wd919rplk092iiwwq1mpb9m"; depends=[badger BBmisc data_table dplyr framecleaner gtools janitor listviewer magrittr purrr rlang rlist scales stringr tibble tidyr tidyselect]; }; @@ -18482,7 +18092,7 @@ in with self; { vampyr = derive2 { name="vampyr"; version="1.1.1"; sha256="137sdv4shmjg1cpndjknrys2jkvyq3p9l11nrdh0bzp9xxc1wkh1"; depends=[corpcor EFA_MRFA fungible GPArotation lavaan moments PCovR psych semPlot]; }; vandalico = derive2 { name="vandalico"; version="0.0.1"; sha256="0ipx9yq5wgpwphy1wzpa8jh605k3b5nkhplj4k0bym107010s3qd"; depends=[ROCR]; }; vanddraabe = derive2 { name="vanddraabe"; version="1.1.1"; sha256="094kd72slq0n3pk0p6zps241aszb9yql49h4mr007zf0kn8wlf8v"; depends=[bio3d cowplot fastcluster ggplot2 openxlsx reshape2 scales]; }; - vannstats = derive2 { name="vannstats"; version="1.2.2.27"; sha256="0ixad5934fpfyz831vc14300fkyyc95ia87w5jcqmk0l40sks4d7"; depends=[car dplyr formula_tools gdata ggplot2 gplots MASS purrr rlang rstatix stringr tidyverse]; }; + vannstats = derive2 { name="vannstats"; version="1.2.4.29"; sha256="0f1q19478p56jybb3x3qcxypddg7abd1577p54q3wlx7vqrkmpsm"; depends=[car dplyr formula_tools gdata ggplot2 gplots MASS purrr rlang rstatix stringr tidyverse]; }; vanquish = derive2 { name="vanquish"; version="1.0.0"; sha256="01di1j36npl7vnyhgsagvyf6j8bxcw867dwf9dgi7l1328s7lf0l"; depends=[changepoint e1071 ggplot2 VGAM]; }; vapour = derive2 { name="vapour"; version="0.8.5"; sha256="14sxn4vdig31vflrbyzpkqfwdcf9xj468wxd7yicvca0ibmr80yf"; depends=[Rcpp]; }; varEst = derive2 { name="varEst"; version="0.1.0"; sha256="0i6nsxl5w4zipzrmdvx8plmxr33n405w2qhks3s7zzs3kcys32v6"; depends=[caret glmnet lm_beta SAM]; }; @@ -18506,7 +18116,6 @@ in with self; { varjmcm = derive2 { name="varjmcm"; version="0.1.1"; sha256="1xgy3n57pxhv6wrsw9h4dranxbw6hdpm1f9ra3kwlzrpz5c3289x"; depends=[expm jmcm MASS Matrix]; }; vars = derive2 { name="vars"; version="1.5-6"; sha256="1ggkmds5ibww61mkc50bzh75py4n2g9bd6wqb3nvfw9zn58k7znx"; depends=[lmtest MASS sandwich strucchange urca]; }; varsExplore = derive2 { name="varsExplore"; version="0.3.0"; sha256="0d18wqq7fbs5ljdphsdgqmv8ab0wrzzykjhf4lqksi7n78s1fa2r"; depends=[dplyr DT glue magrittr purrr rio rstudioapi stringr tidyr]; }; - varycoef = derive2 { name="varycoef"; version="0.3.1"; sha256="0vhv2rraq6iqhqhjp5vdml1ppyr2xrqd97vgk4h0izk4v8r0l69k"; depends=[glmnet lhs mlr mlrMBO optimParallel ParamHelpers pbapply RandomFields smoof sp spam]; }; vasicek = derive2 { name="vasicek"; version="0.0.3"; sha256="04g5dfn8zlm8n8sxmdq9xgkf0qbvvznqx27nyan268s5wlnnabd6"; depends=[mvtnorm]; }; vasicekreg = derive2 { name="vasicekreg"; version="1.0.1"; sha256="0hlac3p6mm7x88wdlqc93byx1s2a287kvhwzhz01pz4anap30683"; depends=[gamlss gamlss_dist mvtnorm Rcpp]; }; vaultr = derive2 { name="vaultr"; version="1.1.0"; sha256="0ciy6i6pzmxk6w42lm0iz8f69i3k8dhl7bkci0awj3rddlk02yg5"; depends=[getPass httr jsonlite R6]; }; @@ -18514,32 +18123,31 @@ in with self; { vbsr = derive2 { name="vbsr"; version="0.0.5"; sha256="1avskbxxyinjjdga4rnghcfvd4sypv4m39ysfaij5avvmi89bx3b"; depends=[]; }; vccp = derive2 { name="vccp"; version="0.1.1"; sha256="1c0mk46c74kj5y9rfniywbxxmwb2z16szzpq6b2sw8q0qi1cf5ji"; depends=[mosum mvtnorm VineCopula]; }; vcd = derive2 { name="vcd"; version="1.4-9"; sha256="13sn77qdcyll9lz7nab0bxzfvpgj8f5rl2cq5ylpz8pibynj1d55"; depends=[colorspace lmtest MASS]; }; - vcdExtra = derive2 { name="vcdExtra"; version="0.7-6"; sha256="1y8yzy5686hn4pp10pg2kh5ga3z60h1849a3didl0fayvml6091q"; depends=[ca gnm MASS vcd]; }; + vcdExtra = derive2 { name="vcdExtra"; version="0.8-0"; sha256="1wv1ypjdvw639jlphwfpqgpjkk4ki98l2lfbpncsbpy9jpknjsmk"; depends=[ca gnm MASS vcd]; }; vcfR = derive2 { name="vcfR"; version="1.12.0"; sha256="0lhxb3ac4fafwik9q3cds46svzf0hyca8k54chw3dpk50c0zz1yx"; depends=[ape dplyr magrittr memuse pinfsc50 Rcpp stringr tibble vegan viridisLite]; }; vcmeta = derive2 { name="vcmeta"; version="1.0.0"; sha256="18jg3kqdk9162qvhkmrvq0j86nq82iwws20wrfgb4hy1w63bzfz3"; depends=[ggplot2 mathjaxr Rdpack]; }; vcov = derive2 { name="vcov"; version="0.0.1"; sha256="1w89mr8dk6436bxap28rszajgm9k7sjfqsr1i4p68dlhw8zk4yq1"; depends=[]; }; vcpen = derive2 { name="vcpen"; version="1.9"; sha256="0gg5ln9r7i8rh91pf7789fic4aah22jc259qyg606bax2w57qmi5"; depends=[knitr Rcpp RcppArmadillo]; }; vcr = derive2 { name="vcr"; version="1.0.2"; sha256="0d7g67adnjhhaikz61nc3ivl8pzyvsk8ah0a34d8wgxknfva29sb"; depends=[base64enc cpp11 crul httr R6 rprojroot urltools webmockr yaml]; }; - vcrpart = derive2 { name="vcrpart"; version="1.0-4"; sha256="1mg87jpdih33lalxhfcxbri439d4cgi7hqdrnvijr7qabjmnc7p4"; depends=[formula_tools nlme numDeriv partykit rpart sandwich strucchange ucminf zoo]; }; - vctrs = derive2 { name="vctrs"; version="0.4.0"; sha256="0bslr22jnnwxx45s1a19az6saqf2svi8vkjf64pnpc6rma4ygpl9"; depends=[cli glue rlang]; }; + vctrs = derive2 { name="vctrs"; version="0.4.1"; sha256="1pb0wjpwix29q8d8p3wi72a9mp9mif7369pk31w238cs00g8hxln"; depends=[cli glue rlang]; }; vcvComp = derive2 { name="vcvComp"; version="1.0.2"; sha256="0mip0v8gv358aadc3b4913dcz27kscx3dv15nwns20pan5jvyhv2"; depends=[]; }; vdar = derive2 { name="vdar"; version="0.1.3-2"; sha256="061ahwf8gyjqs5j9mkqnpn7899mivn4qbygnnzihmv065xj5vpd9"; depends=[compositions]; }; vdg = derive2 { name="vdg"; version="1.2.1"; sha256="1jxqwg7k8ibzzdx8axhn2dx27j60qj0dlmczbfalll841ggigb45"; depends=[ggplot2 gridExtra proxy quantreg]; }; vdiffr = derive2 { name="vdiffr"; version="1.0.4"; sha256="1z8nn8yh6jfzb9r7ylmigwh1p30lrclqm6khmp323qqphzmzfdwy"; depends=[cpp11 diffobj glue htmltools lifecycle rlang testthat xml2]; }; vdra = derive2 { name="vdra"; version="1.0.0"; sha256="1ldl3wm55a5ywc5398lzky6l6x5a9djxwrqnrd570fg4iq6d30l1"; depends=[]; }; - vec2dtransf = derive2 { name="vec2dtransf"; version="1.1"; sha256="029xynay9f9rn0syphh2rhd3szv50ib4r0h0xfhhvbbb37h5dc9s"; depends=[sp]; }; + vec2dtransf = derive2 { name="vec2dtransf"; version="1.1.2"; sha256="1diwj005b0mzcik2v7phdbn792qy907cna3mzwr4sj21igjrhkmx"; depends=[sp]; }; veccompare = derive2 { name="veccompare"; version="0.1.0"; sha256="03nyyxvhhwfxxg5w6qflk7q234ipbhj9fd4abcp50sxz3diabch1"; depends=[corrplot gtools pander purrr qgraph reshape2 VennDiagram]; }; vecsets = derive2 { name="vecsets"; version="1.3"; sha256="1pc68v0vrn1fxh7x8cb45m0xfb0228naz4i1cnizbvll6almh5hr"; depends=[pracma]; }; vectorwavelet = derive2 { name="vectorwavelet"; version="0.1.0"; sha256="1z0gl28hgrqgx0ynv248a80fh190pm15c9cg1l1665acrw62kqs7"; depends=[biwavelet fields foreach iterators maps Rcpp spam]; }; vegalite = derive2 { name="vegalite"; version="0.6.1"; sha256="0dlzhvrg3nj6knyycdgg3d1vzq3dn9vxb34fjin9hzilszqmarbk"; depends=[base64 clipr digest htmltools htmlwidgets jsonlite magrittr webshot]; }; - vegan = derive2 { name="vegan"; version="2.5-7"; sha256="0aj6m9l1vkh32sar6fyvq4p8j4h2f2f347w1300qnzgaa5lmhfz6"; depends=[cluster lattice MASS mgcv permute]; }; + vegan = derive2 { name="vegan"; version="2.6-2"; sha256="0nf0ny6jzfy135xiygzzkr0y55y8g27hrbk8c869plarr48d2xxb"; depends=[cluster lattice MASS mgcv permute]; }; vegan3d = derive2 { name="vegan3d"; version="1.1-2"; sha256="01yyhrapdvs6rr5hw1ij4jnpz7mq005s35pn96snpy8ngn6ir386"; depends=[cluster rgl scatterplot3d vegan]; }; vegawidget = derive2 { name="vegawidget"; version="0.4.1"; sha256="1rlx090vkvxizwfzcxbsxw5a0swgl3xp7v9d1d9r5v6m9yzam7k3"; depends=[assertthat digest glue htmltools htmlwidgets jsonlite magrittr rlang]; }; vegclust = derive2 { name="vegclust"; version="2.0.0"; sha256="1zxgkq4ymg3w2dccfr448nmxp2kl7ws206djl2ymsrvzigivfqgs"; depends=[MASS sp vegan]; }; vegdata = derive2 { name="vegdata"; version="0.9.10"; sha256="1n2569mq4mmdyv8ilx4k9ccmdaycnsw6r438mvr43gdfwzsvn9v2"; depends=[curl DBI dbplyr dplyr foreign hoardr httr magrittr plyr RCurl readr rlang RSQLite tibble xml2]; }; vegperiod = derive2 { name="vegperiod"; version="0.3.1"; sha256="178zp7hw7bicygzl4ql0a9llkmrk4kyszcvvl430pvsc5y6srg75"; depends=[]; }; vegtable = derive2 { name="vegtable"; version="0.1.7"; sha256="1rxc2f4w51p4gr30p56n3shwvknlbqb8wczbs2xxvcf1f823yn38"; depends=[foreign knitr qdapRegex sp stringi taxlist vegdata]; }; - vein = derive2 { name="vein"; version="0.9.5"; sha256="1cqm6phr627yplvq7zjzcrk7gdv7lyh16b4yvlqh6zagamib9ph3"; depends=[cptcity data_table dotCall64 fields sf units]; }; + vein = derive2 { name="vein"; version="0.9.6"; sha256="0icrmyqqxcvjbb871l100kv72j7w4k48bhnnlwqcj0230bvjwkvk"; depends=[cptcity data_table dotCall64 fields sf units]; }; velociraptr = derive2 { name="velociraptr"; version="1.1.0"; sha256="0a67vmv05cxc9f27aqzr6nkgy2mj3fhykwj5nb23qwfqa669a5hi"; depends=[sf]; }; vembedr = derive2 { name="vembedr"; version="0.1.5"; sha256="1hmwgrp9vj7qwmsvnvgry8h707kj53wp5chpxqsbgxi9jryabpc0"; depends=[assertthat glue htmltools httr lifecycle magrittr stringr]; }; venn = derive2 { name="venn"; version="1.10"; sha256="1r31z6s384mcrjqxm9818mvc7v23ir26wcix5lc831fwihajlhk5"; depends=[admisc]; }; @@ -18553,7 +18161,7 @@ in with self; { versionsort = derive2 { name="versionsort"; version="1.1.0"; sha256="00r0h2iqlfq0nidqbhx4fv29rlppfx43jv2n2zp38lpx5vbqjhnj"; depends=[]; }; vertexenum = derive2 { name="vertexenum"; version="1.0.2"; sha256="16ywz3z1kzhb3knhhi2i5igm3djdaaxyyrw69wkc5saa7ayhdb4y"; depends=[numbers]; }; vesselr = derive2 { name="vesselr"; version="0.2.1"; sha256="1wzprnpiv04gxhqgki36gp1a0xj9l3mchllphwkfsdja4axq3prk"; depends=[oro_nifti pbapply pbmcapply]; }; - vetiver = derive2 { name="vetiver"; version="0.1.3"; sha256="1yn4vhnkgqqgzkbg2qjpf8n3pm2xdx2p8plxb4y1xffbpzsspjan"; depends=[butcher cli curl generics glue hardhat httr jsonlite lifecycle pins plumber purrr rapidoc readr renv rlang tibble vctrs withr]; }; + vetiver = derive2 { name="vetiver"; version="0.1.4"; sha256="15snf6d8miada15x8v0nza3rk19yp1kl0371biylqpgrbdzbn4s7"; depends=[butcher cli curl fs generics glue hardhat httr jsonlite lifecycle pins plumber purrr rapidoc readr renv rlang tibble vctrs withr]; }; vetools = derive2 { name="vetools"; version="1.3-28"; sha256="1470xgqdq9n5kj86gdfds15k3vqidk3h99zi3g76hhyfl8gyl1c0"; depends=[lubridate maptools plyr scales sp stringr tis xts]; }; vetr = derive2 { name="vetr"; version="0.2.13"; sha256="0wbhi5wzwvvp645dg8na8mh1yxvvfzwdm34xqrqkzh6cvlvlby4c"; depends=[]; }; vfcp = derive2 { name="vfcp"; version="1.4.0"; sha256="0zj1ihqdx5x1695al1xyi8k001yw8x7gdss72myxlnh7b4flnp9m"; depends=[copula extraDistr stringr]; }; @@ -18566,6 +18174,7 @@ in with self; { vietnamcode = derive2 { name="vietnamcode"; version="0.1.1"; sha256="0vc0c1fg30afar2dkch5h27b8jbglcd9ja6d5hcypnibqz4c68vz"; depends=[]; }; vietnameseConverter = derive2 { name="vietnameseConverter"; version="0.4.0"; sha256="1bnscv1yz4hr6cvpavdj2gjn6dqy96rbagxl9280a2xxav09mps3"; depends=[gsubfn sf utf8]; }; viewpoly = derive2 { name="viewpoly"; version="0.1.1"; sha256="1ba1q4348gm7h860plaj2hvi0vlmy3d8xw7cxngifgnv11617b2m"; depends=[abind config dplyr DT ggplot2 ggpubr golem JBrowseR markdown plotly reshape2 rlang shiny shinydashboard shinyjs shinythemes shinyWidgets tidyr vroom]; }; + villager = derive2 { name="villager"; version="1.1.1"; sha256="0g72zpsqi39ax44n3s3x66b1fbgyx6w2wraf531jsy7vj95ivr2p"; depends=[R6 readr uuid]; }; vimp = derive2 { name="vimp"; version="2.2.5"; sha256="13461pcvyc6rad1rf2ymmkyzcwjxw7g4fs8qd51baljhjnjmifv0"; depends=[boot data_table dplyr magrittr MASS rlang ROCR SuperLearner tibble]; }; vimpclust = derive2 { name="vimpclust"; version="0.1.0"; sha256="0ly7piz7q88sh2g7zq5b2pqph9467b4fclgq9amm0m7xc8vrv4f9"; depends=[ggplot2 mclust PCAmixdata Polychrome rlang]; }; vindecodr = derive2 { name="vindecodr"; version="0.1.1"; sha256="0yvchdf90l8lkzyba5wrpma6vjcgf19li159s8s79y8sgp5pyx7p"; depends=[httr]; }; @@ -18608,7 +18217,6 @@ in with self; { vkR = derive2 { name="vkR"; version="0.2"; sha256="1pk444fcw4yyv2dnfrw9vynbpc4gwr5yv9jd41djp9yipdf6d53l"; depends=[httr jsonlite purrr XML]; }; vlad = derive2 { name="vlad"; version="0.2.2"; sha256="0c3zfjm5nj7iisfnl822sk8wdszv6hcsaf51sn7aqnlp579hq2jk"; depends=[BH checkmate dplyr magrittr Rcpp RcppArmadillo tidyr]; }; vlda = derive2 { name="vlda"; version="1.1.5"; sha256="17xn8qqh043dm05ib3h4l1qx07wxncf5d06x9l1wl6jbkvnsm2nq"; depends=[dplyr ggiraph ggplot2 ggrepel ggsci]; }; - vmd = derive2 { name="vmd"; version="0.1.0"; sha256="17c06a9l6i90ivpvf3rgv6yrsqv36qmywmmy92y5b81zqhgmh907"; depends=[ggplot2 magrittr R6 Rcpp reshape2 scales]; }; vmeasur = derive2 { name="vmeasur"; version="0.1.4"; sha256="17rqr8zpfnq3f0d3yi9w09wvrbq79g4w7rkqf4l2wyd8ic5npwb0"; depends=[av crayon doFuture dplyr foreach future ggplot2 ggpubr imager magrittr pdftools pracma progressr purrr readr rlang scales stringr svDialogs tidyr]; }; vmr = derive2 { name="vmr"; version="0.0.3"; sha256="1qxcbmf71xwlmi5wyjs3a86ywjd0cj6f86kyq5bpw4ykn797kciw"; depends=[curl jsonlite]; }; vntrs = derive2 { name="vntrs"; version="0.1.0"; sha256="0ffjjzcs7i4zli7bn83gkgi0q7dmgyxrhv9l3gdambma9hsig45c"; depends=[trust]; }; @@ -18628,16 +18236,13 @@ in with self; { vottrans = derive2 { name="vottrans"; version="1.0"; sha256="1fp7jrw072ws39bqsg88bm2qndcv68aa2vdqwgnza58p1dfq3x9f"; depends=[quadprog]; }; vov = derive2 { name="vov"; version="0.1.2"; sha256="0hbb9zj33a98rv4grm644k650pq6kgmm6l01mkd4p0ic0mxa9fyh"; depends=[glue htmltools shiny]; }; vowels = derive2 { name="vowels"; version="1.2-2"; sha256="0xhfn3avx9h6kg3jwd47n2x7w8q8c9h13wsxd74hhbbn2gkjrs84"; depends=[]; }; - vows = derive2 { name="vows"; version="0.5"; sha256="06akjdbab9v7r47di7syvcm7gf4k81djizg8maszs5l1ksyhmv6b"; depends=[fda gamm4 mgcv oro_nifti RLRsim shape stringr]; }; voxel = derive2 { name="voxel"; version="1.3.5"; sha256="1xlym8xc22dq67h0lylrr16z7b4zdidpgrkvbs7n9fnkh6vijw2j"; depends=[gamm4 ggplot2 lmerTest mgcv oro_nifti purrr]; }; vpc = derive2 { name="vpc"; version="1.2.2"; sha256="15s9f6hmqawv2594xqv58hnqg2wm1fm8qaj8h9k4m55cx4sf1hik"; depends=[classInt dplyr ggplot2 MASS readr stringr survival tidyr]; }; vprr = derive2 { name="vprr"; version="0.1.0"; sha256="0wxcaw6r56wd8sxr5xc10xbhg9cbfz82z4cn4x0w8qhrzwl4v0zl"; depends=[dplyr ggplot2 gridExtra gsw interp lubridate magick metR oce stringr tidyr usethis]; }; vrcp = derive2 { name="vrcp"; version="0.1.1"; sha256="1wrch1dqy752gkj24h1dgi2x3kf1797xj4pf1s9mszf3x3ic905d"; depends=[ggplot2]; }; - vrmlgen = derive2 { name="vrmlgen"; version="1.4.9"; sha256="0lifhhf41yml4k83wpkssl14jgn8jaw1lcknwbci1sd8s1c4478l"; depends=[]; }; vrnmf = derive2 { name="vrnmf"; version="1.0.2"; sha256="0n0kmzhygaii9kipcmr943s0vcf8brxgsk25m9illd4fij6nwpp2"; depends=[ica lpSolveAPI Matrix nnls quadprog]; }; vroom = derive2 { name="vroom"; version="1.5.7"; sha256="1plz20x6s01gkkcac51lhx4r2s024pgh778ri7y25hkiiwacp1yh"; depends=[bit64 cli cpp11 crayon glue hms lifecycle progress rlang tibble tidyselect tzdb vctrs withr]; }; vrtest = derive2 { name="vrtest"; version="0.97"; sha256="00hdgb0r18nwv3qay97b09kqqw9xqsbya06rrjyddqh9r6ggx1y0"; depends=[]; }; - vscc = derive2 { name="vscc"; version="0.2"; sha256="1p14v8vd8kckd44g4dvzh51gdkd8jvsc4bkd2i4csx8vjiwrni5w"; depends=[mclust teigen]; }; vsd = derive2 { name="vsd"; version="0.1.0"; sha256="18whnvary4glblzx1vxf3yzsllnnnbnyijwhbw7bi3agppnwrf22"; depends=[dplyr flexsurv ggplot2 ggpubr magrittr muhaz survival survminer]; }; vsgoftest = derive2 { name="vsgoftest"; version="1.0-1"; sha256="0vypi4cf04bljmx3jwq3ixs86ivd6p7a825ik189y71fyqg9g70v"; depends=[fitdistrplus Rcpp]; }; vsp = derive2 { name="vsp"; version="0.1.0"; sha256="0fa3fdjhq59gpx0ac38ska0sfhq07g9x3vhbvrvlpc18kxwj5mzh"; depends=[ggplot2 glue invertiforms LRMF3 magrittr Matrix rlang RSpectra tibble withr]; }; @@ -18654,8 +18259,7 @@ in with self; { wISAM = derive2 { name="wISAM"; version="0.2.8"; sha256="0c5ic98ihpzkycsj9wg0127civm4w1rmkkw6zsjp8sfn20cl8a8z"; depends=[MASS]; }; wNNSel = derive2 { name="wNNSel"; version="0.1"; sha256="19j2yz6lvkxpmjr0vv6pjc7j1c02y0hb3gay5sy1y0xk706aggb5"; depends=[]; }; wPerm = derive2 { name="wPerm"; version="1.0.1"; sha256="0f3v0kba87wkwyii0pzvs6a8ja897aifpvwkvryl2hzxxxaml7z4"; depends=[]; }; - wTO = derive2 { name="wTO"; version="1.6.3"; sha256="1cgbw37b734ipg5qhjsil55qysfn6xmymj1q99ybkadi0axp55nn"; depends=[data_table igraph magrittr plyr reshape2 shiny som visNetwork]; }; - waccR = derive2 { name="waccR"; version="0.1.0"; sha256="092p1bibyqx1gcrch68l9ilzilg5aqf46b6iagm562292cfi074l"; depends=[dplyr lubridate magrittr rvest tibble xml2]; }; + wTO = derive2 { name="wTO"; version="2.0"; sha256="0wzip3md9arxpwibd1ihfhir79630xj2g2m0bz12lh2z0yz76r0f"; depends=[data_table HiClimR igraph magrittr plyr reshape2 Rfast som visNetwork]; }; wacolors = derive2 { name="wacolors"; version="0.3.1"; sha256="0c5ja70vgb2f1l2k5j7amxhkydbj44nc290ccr816xglj31nvsiy"; depends=[ggplot2 scales]; }; wactor = derive2 { name="wactor"; version="0.0.1"; sha256="0dc7413jb3yz0nns2lc93w32wv6m4sg17j2ip63gc12vis0nf855"; depends=[ggplot2 Matrix R6 text2vec tibble tokenizers xgboost]; }; waffle = derive2 { name="waffle"; version="0.7.0"; sha256="1qjmai33p96cyavi9lgi6k30h6fj7db5sr569v9jf4kwx92c61df"; depends=[extrafont ggplot2 gridExtra gtable RColorBrewer]; }; @@ -18693,14 +18297,14 @@ in with self; { waver = derive2 { name="waver"; version="0.2.1"; sha256="1kl14cd96fwrqvk35sqbgi8bf31gc2ccxxy5d1v46scwyqkb0g5l"; depends=[geosphere rgdal rgeos sp]; }; waves = derive2 { name="waves"; version="0.2.4"; sha256="128q1l0ishdgpa33zh77xpi79nvziix8swq1rwyawnznl9ybs29w"; depends=[caret dplyr ggplot2 lifecycle magrittr pls prospectr randomForest readr rlang scales spectacles stringr tibble tidyr tidyselect]; }; waveslim = derive2 { name="waveslim"; version="1.8.2"; sha256="0ibivnhz0l06sss5rrrcvyiwg3qpbyk3qn4vx4pp90kj09x4yg0k"; depends=[]; }; - wavethresh = derive2 { name="wavethresh"; version="4.6.8"; sha256="1nz74bm7pgck1i9c28svxnic8wkwkm5dhc8bhrxiih5wxb36kcwk"; depends=[MASS]; }; + wavethresh = derive2 { name="wavethresh"; version="4.6.9"; sha256="03zjmh9nbws2nycjq1hj7ya858d56yqi7i8fmdvahdhyq2bqfw8a"; depends=[MASS]; }; waydown = derive2 { name="waydown"; version="1.1.0"; sha256="1yjx9cd8h8rsi44s7dcqrvfmsbjhw7vkg2z7bl4knsgbki0c978g"; depends=[Matrix numDeriv]; }; wbacon = derive2 { name="wbacon"; version="0.6"; sha256="0b91h71fs07knnqrbr167wdlb1iakafbadzr4zznndwplx3ygpbz"; depends=[hexbin]; }; wbs = derive2 { name="wbs"; version="1.4"; sha256="0ibrf30riavy6shaxgiznwh4gmnkx92260gsl0d74jkys98mlxdj"; depends=[]; }; wbsd = derive2 { name="wbsd"; version="1.0.0"; sha256="16jhimsq8symf6f2awczqkaqkdmlkzhmgk01iimhkvqlx8g2v219"; depends=[Rcpp RcppEigen]; }; wbstats = derive2 { name="wbstats"; version="1.0.4"; sha256="1va3lrksr5zg4k729xvbh176f8zcp9vfrvwxcp04znyh1rvmh6vz"; depends=[dplyr httr jsonlite lifecycle lubridate magrittr readr rlang stringr tibble tidyr]; }; wbsts = derive2 { name="wbsts"; version="2.1"; sha256="07h3wqmb9ya878fwdj49r0npks0pnd3jlnzri1cmf27c691hwka4"; depends=[mvtnorm Rcpp wavelets]; }; - wcde = derive2 { name="wcde"; version="0.0.3"; sha256="0nj3p2wbx2canpn1wfm6jw8p5ymwfyihvyy8hm9svmw5xk10kir8"; depends=[countrycode dplyr forcats magrittr progress purrr readr stringr tibble tidyr]; }; + wcde = derive2 { name="wcde"; version="0.0.4"; sha256="1rygmw2cxn588xr21gmqx154ps6p5592yrqddvvvkpp1sc508xhm"; depends=[countrycode dplyr forcats magrittr progress purrr readr stringr tibble tidyr]; }; wcep = derive2 { name="wcep"; version="1.0.0"; sha256="1hpakygvh3b64i5hwkriwq5g8vnvghvgdj0jn9m59j43050k32cy"; depends=[coin dplyr progress tidyr]; }; wdm = derive2 { name="wdm"; version="0.2.3"; sha256="0fsr5kskg71bwhc5zzhalm29cc7z9p9y8wdmgz2bisgry3v880az"; depends=[Rcpp]; }; wdman = derive2 { name="wdman"; version="0.2.5"; sha256="1yf41lsrr9dbf5n4f5hv9mlmzl736fhnp9gxkm2g9apws6gsig02"; depends=[assertthat binman processx semver yaml]; }; @@ -18723,13 +18327,12 @@ in with self; { webr = derive2 { name="webr"; version="0.1.5"; sha256="03yhlla74i71nphrfhr5sd57ykj7rjanh2a8nw3cq22rg9g668jk"; depends=[dplyr flextable ggforce ggplot2 magrittr moonBook psych purrr rlang rrtable scales shiny sjlabelled stringr tibble tidyr tidyselect vcd ztable]; }; webreadr = derive2 { name="webreadr"; version="0.4.0"; sha256="0l3l5g4zj5faxqi1kqwx9lq91gbj40z2q3csrsmpal08qnwkxs90"; depends=[Rcpp readr]; }; websearchr = derive2 { name="websearchr"; version="0.0.3"; sha256="1c6dwm5g5rjq0b12zrwwi5k9760jb0ph83v4j2gm8zm0x9dhiqm9"; depends=[]; }; - webshot = derive2 { name="webshot"; version="0.5.2"; sha256="0gq4h8cw51z95yvsnf38kj5l58wgljkm0dalmi8mn1sp06bxr0zi"; depends=[callr jsonlite magrittr]; }; + webshot = derive2 { name="webshot"; version="0.5.3"; sha256="1h6v94zwq0ypgi4vf8xlhp5k13j7f9061hx908177i68c6zg5i5p"; depends=[callr jsonlite magrittr]; }; websocket = derive2 { name="websocket"; version="1.4.1"; sha256="1ks9cyj39jnb0rkx2ii3ckmpl373m5f8sz0i4q3gk7kkv3js07r8"; depends=[AsioHeaders cpp11 later R6]; }; webtools = derive2 { name="webtools"; version="0.7.9"; sha256="0pzfdn323gnzb0mznm8975kz8xwkhqm5df6dr7zqy00vf11mzis9"; depends=[crayon dplyr jsonlite pkgsearch RCurl readr rstudioapi stringr tibble]; }; webuse = derive2 { name="webuse"; version="0.1.3"; sha256="09xvw0v991cq1ck2kfxblp5cngfh9j6swvh5xv420mvky0kshv32"; depends=[haven]; }; webutils = derive2 { name="webutils"; version="1.1"; sha256="16a6ds0fnb6y8i1r9ba1hf1ydb53am57s070b3hi5jmrs84b9qik"; depends=[curl jsonlite]; }; wec = derive2 { name="wec"; version="0.4-1"; sha256="10lqh43536d44d6082rpp11q1323pmjbmgrgb8v9mrk9c1ysf50w"; depends=[dplyr]; }; - weco = derive2 { name="weco"; version="1.2"; sha256="1prk8hn782pd8g2rbbaj7y10vjimqs9n8i4rab6aw6fc3k759d6b"; depends=[]; }; weed = derive2 { name="weed"; version="1.1.1"; sha256="18kz10c580a25cxcghvp81irwqncvhjan3y5gnzy8gxm894q3p7m"; depends=[countrycode dplyr forcats geonames ggplot2 here magrittr purrr readxl rgeos sf stringr tibble tidyr tidytext]; }; wehoop = derive2 { name="wehoop"; version="1.2.1"; sha256="1w6zrn2w86qrnx7jrc1fldfpg21rryq8r552323rd2p8n8d0w012"; depends=[data_table dplyr furrr future glue janitor jsonlite magrittr progressr Rcpp RcppParallel rlang rvest stringr tidyr usethis]; }; weibull4 = derive2 { name="weibull4"; version="1.0.0"; sha256="1a95yw67iy7dqib33v31apxmskl019zng66jrlflbqx6p2vjdh30"; depends=[]; }; @@ -18765,7 +18368,6 @@ in with self; { whitestrap = derive2 { name="whitestrap"; version="0.0.1"; sha256="1jcnxqxvkhyz9j6jay5834ncv5fxb9qiyyyj3b8al75mqknmn8ra"; depends=[]; }; whoa = derive2 { name="whoa"; version="0.0.2"; sha256="1wa1s2dqwkmfa3avrgqkm6w59b6vm2xnnb77q25w187wdpjq65xx"; depends=[dplyr ggplot2 magrittr Rcpp tibble tidyr vcfR viridis]; }; whoami = derive2 { name="whoami"; version="1.3.0"; sha256="19fwl7z55s4kl2xzwqwh8iwg13kdrv222vyl3kibxgwrjcjwj2y2"; depends=[httr jsonlite]; }; - whomds = derive2 { name="whomds"; version="1.0.1"; sha256="1imz98lldrhxnqlq062vblacc25yr2gmpq9fnq8aj9y7jpc719c5"; depends=[colorspace dplyr eRm foreign ggplot2 ggraph GPArotation httr igraph intergraph lordif lubridate nFactors openxlsx plyr polycor psych purrr RColorBrewer readr rlang scales srvyr stringr survey TAM tibble tidygraph tidyr WrightMap]; }; wiad = derive2 { name="wiad"; version="0.0.1.0"; sha256="1yr1cng5659n8chfghpyfxvqzl8b57vdjzv5m22cbcvrlq6m6p4j"; depends=[abind data_table dplyr DT shiny]; }; widals = derive2 { name="widals"; version="0.6.1"; sha256="1094yaaq2xb0ykvc1j3hs87j1p4h7zgf8mkn4han8iw5fmr9zncy"; depends=[snowfall]; }; widgetframe = derive2 { name="widgetframe"; version="0.3.1"; sha256="0j0d73m72nzfc1wyrgsqr99ldx72adis6pd57mpim55hz0n9l224"; depends=[htmltools htmlwidgets magrittr purrr]; }; @@ -18773,7 +18375,7 @@ in with self; { wiesbaden = derive2 { name="wiesbaden"; version="1.2.5"; sha256="04xr757lhcfafcc8xfcbqrg982ifig50lx1khw718kzydf7xwr7w"; depends=[httr jsonlite keyring readr stringi stringr xml2]; }; wig = derive2 { name="wig"; version="0.1.0"; sha256="0gj8sxd5903h0rizd260ffskarywkvf87ck4ixf8gb1z1vgqf8i4"; depends=[dplyr magrittr stringr tibble]; }; wikiTools = derive2 { name="wikiTools"; version="0.0.6"; sha256="1h0xi7vw2vzmarxfx0gdy895sh53mz4gj4zwrpynwc9d8cppx50q"; depends=[httr jsonlite ratelimitr WikidataQueryServiceR WikidataR]; }; - wikibooks = derive2 { name="wikibooks"; version="0.2"; sha256="178lhri1b8if2j7y7l9kqgyvmkn4z0bxp5l4dmm97x3pav98c7ks"; depends=[]; }; + wikibooks = derive2 { name="wikibooks"; version="0.2.1"; sha256="1ws6spwxxcnjrzcngbr6n4hqy1di7s2h8iz6a62gyw84kpl542bw"; depends=[]; }; wikifacts = derive2 { name="wikifacts"; version="0.4.2"; sha256="1fw1chha6mcrmv1f9rjg01g84bgzkgf1h76l926brjs5gsn4i414"; depends=[magrittr rvest xml2]; }; wikilake = derive2 { name="wikilake"; version="0.6.0"; sha256="1zz5v6kfg5blpz9kl6pz4z9xqs8xpcklncq4k8996hjn4a8mpvyz"; depends=[dplyr maps rvest selectr sp stringi stringr tidyr units WikipediR xml2]; }; wikipediatrend = derive2 { name="wikipediatrend"; version="2.1.6"; sha256="11ng7qsb4954mgsz55ix86z0ynh4xgflcp6dzl0y4zi6zdrj87i7"; depends=[ggplot2 glue hellno httr pageviews rvest stringr xml2]; }; @@ -18785,8 +18387,8 @@ in with self; { wildpoker = derive2 { name="wildpoker"; version="1.1"; sha256="1302ain55spz34irmq49sp9b1pvrn2nxmzmqs8m9wdk6g82h3s27"; depends=[]; }; wildviz = derive2 { name="wildviz"; version="0.1.2"; sha256="03vhacaxp5fahq5afcf1q0qvmndpqc6a63pnins7h3p8ryvlpx14"; depends=[DBI dplyr ggplot2 ggthemes httr jsonlite lubridate plotly purrr rnoaa RSQLite shiny shinythemes tibble tidyr]; }; wilson = derive2 { name="wilson"; version="2.4.2"; sha256="050hi6rigs024is1ry0yymqapgqfhzpp0ghk5ya028k71k22lksx"; depends=[circlize colourpicker ComplexHeatmap data_table DESeq2 DT factoextra FactoMineR ggplot2 ggrepel gplots heatmaply log4r openssl plotly plyr R6 RColorBrewer reshape rintrojs rje rjson RJSONIO scales shiny shinycssloaders shinydashboard shinyjs shinyWidgets viridis zip]; }; - winRatioAnalysis = derive2 { name="winRatioAnalysis"; version="0.1.0"; sha256="1msvc06bfzw9clinxbvr5fdw38dff0c0xii46182nwnk5kj0libr"; depends=[data_table JM Matrix MLEcens mvtnorm nlme plyr pssm survival]; }; winch = derive2 { name="winch"; version="0.0.8"; sha256="0qpk9a40gv88wl1y5qa7fpvwjqnlm6jx2rh50r3fipdilchhzg0f"; depends=[procmaps]; }; + windAC = derive2 { name="windAC"; version="1.2.8"; sha256="0gfc744d760kxbbl6mk0g96x8zbn9hdm2ws5m85kpkjm5w1rwcc7"; depends=[mvtnorm sf]; }; windex = derive2 { name="windex"; version="2.0.3"; sha256="063lhxpa8gwkaxa5p61dac239s6b11mv53d8dcah5h1q04inshm0"; depends=[ape geiger phangorn scatterplot3d]; }; windsoraiR = derive2 { name="windsoraiR"; version="0.1.2"; sha256="1smd3zw5ra1fba6mds3diadcmbw59jlvmrvfzzi4fss91wv50jql"; depends=[jsonlite]; }; winfapReader = derive2 { name="winfapReader"; version="0.1-3"; sha256="1g5z9kg5ws9cdixky2y0c7dw3f7lmh3ykjxrh3jjmkm75gzgs7p0"; depends=[lubridate]; }; @@ -18799,11 +18401,11 @@ in with self; { wkb = derive2 { name="wkb"; version="0.4-0"; sha256="0mah538345npkb06bcj18mb6qnnx8nn7bdqmvqqpbawallh546a9"; depends=[sp]; }; wktmo = derive2 { name="wktmo"; version="1.0.5"; sha256="05pjyk0xsdazbi1x7xfmg097ybybd60zmzzm7sch1ikp05hzn0wb"; depends=[]; }; wkutils = derive2 { name="wkutils"; version="0.1.1"; sha256="17v7bc1kcbykf5bqxjqhg5n20r5y4h4wb99zhf17ahr15gvibgr1"; depends=[Rcpp tibble vctrs wk]; }; - wmlf = derive2 { name="wmlf"; version="0.1.2"; sha256="0zxw84l5v12r15hpyd1kbajjz3cbkn5g884kmj72y7yi0yi1b6d6"; depends=[waveslim]; }; wmm = derive2 { name="wmm"; version="1.1.1"; sha256="0qy4cp4d8nlcqlcs4mqjv1f1kf1yh9y2wvh1ak6f049qlj7yfwfb"; depends=[]; }; wmwpow = derive2 { name="wmwpow"; version="0.1.3"; sha256="03rd75r4wih1w7srhnwqxjkirisb43y1sd2f1wzixqj8lq0dmb25"; depends=[lamW MASS smoothmest]; }; wnl = derive2 { name="wnl"; version="0.6.4"; sha256="0157q09paiyvg9almsq8bp5z8kj8bclc4rak7n1qrsx2asjyl2py"; depends=[numDeriv]; }; wnominate = derive2 { name="wnominate"; version="1.3"; sha256="0k4w6qbmwqd720dsslmb3xl53lr0b16rr0w9frybfq4046g9i2c6"; depends=[pscl]; }; + wodds = derive2 { name="wodds"; version="0.1.0"; sha256="00rk7wmz0rknh4v9p0r6syi1c5dch7wkq7cz9zg6n8d72sia4azv"; depends=[dplyr glue magrittr purrr tibble]; }; woe = derive2 { name="woe"; version="0.2"; sha256="15mvcmwnrqxpzn054lq85vyzq5rgxkiwbd40gnn4s3ny1xdrwgsm"; depends=[]; }; woeBinning = derive2 { name="woeBinning"; version="0.1.6"; sha256="0x890h5fh59n54587adyzphr956fkg3px8i7c378aq1fs7k35gxs"; depends=[]; }; womblR = derive2 { name="womblR"; version="1.0.4"; sha256="0yjz4nymhqq6aqvxf0a90bw3hi1zqz1zp3mxbv2ns5v5ygh2a10p"; depends=[msm mvtnorm Rcpp RcppArmadillo]; }; @@ -18824,7 +18426,7 @@ in with self; { words = derive2 { name="words"; version="1.0.1"; sha256="1kd9f5470c7bdayb324m4m72v7s2kknr68qbggl5m0ww29gxs9wd"; depends=[]; }; wordsalad = derive2 { name="wordsalad"; version="0.2.0"; sha256="18kgwq6f9ymm1bmbvpmxq9gz5fx0qj64439scr21kk1cvsfl4y88"; depends=[fastTextR text2vec tibble word2vec]; }; wordspace = derive2 { name="wordspace"; version="0.2-7"; sha256="0hrjv5mag7gwl4wj7np248sdyns5i623wl37b11hlgalhbmlypyf"; depends=[cluster iotools MASS Matrix Rcpp sparsesvd]; }; - workboots = derive2 { name="workboots"; version="0.1.0"; sha256="17j4vz58i645br6pb8b75kk9jib44vs2zjgfc3slj3g39my7n01b"; depends=[assertthat dplyr generics purrr rlang rsample tibble tidyr vip workflows]; }; + workboots = derive2 { name="workboots"; version="0.1.1"; sha256="1adwiq0y67w168p4n8s2s4zmnlr9rlix6x9qs0gxsyyzi08dzdlc"; depends=[assertthat dplyr generics Metrics purrr rlang rsample tibble tidyr vip workflows]; }; workflowr = derive2 { name="workflowr"; version="1.7.0"; sha256="0j1ahxm7xjla1xa38dc8ykn1j5a4yw1p8ivjk3k3va25kam25cp3"; depends=[callr fs getPass git2r glue httpuv httr knitr rmarkdown rprojroot rstudioapi stringr whisker xfun yaml]; }; workflows = derive2 { name="workflows"; version="0.2.6"; sha256="0xhc1j25fjipw8hvcpdbvfm640kp0flwvifj5f7g4n6b3wb8cm6a"; depends=[cli generics glue hardhat lifecycle parsnip rlang tidyselect vctrs]; }; workflowsets = derive2 { name="workflowsets"; version="0.2.1"; sha256="0q42nhnw0mbivadcfb07v71fp39x8fcnjipvn5l5yhjzc56cfxi8"; depends=[cli dplyr generics ggplot2 hardhat lifecycle prettyunits purrr rlang rsample tibble tidyr tune vctrs withr workflows]; }; @@ -18845,7 +18447,7 @@ in with self; { wql = derive2 { name="wql"; version="0.4.9"; sha256="0m16l807mhcjkbqhlzhc24pw4hl78fjyykiszlg337x3qs803fg2"; depends=[ggplot2 reshape2 zoo]; }; wqs = derive2 { name="wqs"; version="0.0.1"; sha256="14qaa9g9v4nqrv897laflib3wwhflyfaf9wpllmbi5xfv9223rcg"; depends=[glm2 Rsolnp]; }; wrGraph = derive2 { name="wrGraph"; version="1.3.1"; sha256="128qhrv2zkl8hl906gf7snqkl4gic41brawcy3a6aq8c4j1dxjvm"; depends=[lattice RColorBrewer wrMisc]; }; - wrMisc = derive2 { name="wrMisc"; version="1.9.0"; sha256="07zf6jp62fdw5lj5r4zl17d26bc11q9qlsn0ljav6gyddsywd0p6"; depends=[MASS]; }; + wrMisc = derive2 { name="wrMisc"; version="1.9.1"; sha256="1p98d0bcnqq2qf3bl6xy834qwnhb1qi287zf29qi2ls8xnzq87ic"; depends=[MASS]; }; wrProteo = derive2 { name="wrProteo"; version="1.6.0"; sha256="0iq75zdip51aw8y37ckah1mddm69cp0lds2cj0xaavrdbaarww49"; depends=[knitr limma wrMisc]; }; wrTopDownFrag = derive2 { name="wrTopDownFrag"; version="1.0.2"; sha256="1rdg6rzjz2h514i3c8z89mvj2j3h1s7rr5fry2mq3xvrwrgd3738"; depends=[wrMisc wrProteo]; }; wrangle = derive2 { name="wrangle"; version="0.5.7"; sha256="0gap15hinsgfjrxajr9kvs0rp76gl5kk2dqs92s9mfyh10kxxqpa"; depends=[dplyr magrittr rlang tidyr]; }; @@ -18865,7 +18467,6 @@ in with self; { wtest = derive2 { name="wtest"; version="3.2"; sha256="063ax9mbb2dy33l1cl533mjzpvhf2akw3613pklfjg6bhprlniz7"; depends=[]; }; wux = derive2 { name="wux"; version="2.2-1"; sha256="0iw0kf0wfspnpc83v7gxhcakmp0z34cccnm0jn9c2za9ay9l2swv"; depends=[abind class corpcor fields gdata Hmisc ncdf4 reshape rgdal rgeos rworldmap sp stringr]; }; wv = derive2 { name="wv"; version="0.1.1"; sha256="06xf3c97pjhln1v31waj8rmp4r0y2kp6v2x10pbpvi8m0nf5zfs1"; depends=[coda Rcpp RcppArmadillo simts]; }; - wwntests = derive2 { name="wwntests"; version="1.0.1"; sha256="1algk2f55dg526zjw2ycfx2dq13m3lvfs75444iyp8fvq7j3wbcs"; depends=[ftsa MASS rainbow sde]; }; wyz_code_metaTesting = derive2 { name="wyz.code.metaTesting"; version="1.1.21"; sha256="1033kz6zhbhd09dh40gp03dfy2kf9zskqh942i06jx1z2dvx3vvi"; depends=[crayon data_table tidyr wyz_code_offensiveProgramming]; }; wyz_code_offensiveProgramming = derive2 { name="wyz.code.offensiveProgramming"; version="1.1.23"; sha256="1cxzh5yp6y2r5n6qkhb4g4dkbyw7mdnsfh883bhksk527ra4qaln"; depends=[crayon data_table R6 stringr tidyr]; }; wyz_code_rdoc = derive2 { name="wyz.code.rdoc"; version="1.1.19"; sha256="02k6wk45dn6i8kzxhgcxqxvrzxf063dny17jjnj83wsxx2b37jgv"; depends=[crayon data_table digest R6 stringr tidyr wyz_code_offensiveProgramming]; }; @@ -18876,17 +18477,18 @@ in with self; { x3ptools = derive2 { name="x3ptools"; version="0.0.3"; sha256="04j40nkwlsaga6kp60rf1grk76dw2i1sqivfm2sj017n0v6mj017"; depends=[assertthat digest dplyr MASS png pracma readr rgl xml2 zoo]; }; xLLiM = derive2 { name="xLLiM"; version="2.2"; sha256="0gmy3jy1nf0fixgwcgfhrwcd85ran5ic7srzcx46akad828a4znq"; depends=[abind capushe corpcor e1071 glmnet igraph MASS Matrix mda progress randomForest]; }; xROI = derive2 { name="xROI"; version="0.9.20"; sha256="0xa12qsw5xbbfqyv60apr4f9gx7q6rad4ywayvw8l2zla2wnhq5h"; depends=[colourpicker data_table jpeg lubridate moments raster RCurl rgdal rjson shiny shinyjs sp stringr tiff]; }; + xRing = derive2 { name="xRing"; version="0.1.1"; sha256="1k4yhqvmixnjvzbw1ymq4brwn9n71vqsqpqw33p79kn98n4fj7z0"; depends=[dplR imager tcltk2 tkRplotR]; }; xSub = derive2 { name="xSub"; version="3.0.1"; sha256="0c3jc801pn85wm17jj911spryg6p3gq19im1506zkv8lqwsy1nab"; depends=[countrycode haven RCurl]; }; xVA = derive2 { name="xVA"; version="1.0"; sha256="00kk3i77xhx05mwh919kd9lckdwihinhlw90syj9ka5xlhdrd3qa"; depends=[SACCR Trading]; }; - xaringan = derive2 { name="xaringan"; version="0.23"; sha256="010k6xhblyanjf0hr4k24m26sb547jizng0nidrb2d4q1m9v1wdm"; depends=[htmltools knitr rmarkdown servr xfun]; }; + xaringan = derive2 { name="xaringan"; version="0.24"; sha256="1fm4vypfx4ci945v9wnyi712mbq6qgrc5gisn30wbc4mk256zaxr"; depends=[htmltools knitr rmarkdown servr xfun]; }; xaringanthemer = derive2 { name="xaringanthemer"; version="0.4.1"; sha256="05gkk9ll5whfvhbd8x3p180qzqcz6krz2s26lfbrp2y7srpx9jr4"; depends=[colorspace glue purrr whisker]; }; xbreed = derive2 { name="xbreed"; version="1.0.1.1"; sha256="032i04ginyf9dyabfkygnhrkq7lqdvvyw7s41vjimy2kvjrnkkkx"; depends=[BGLR]; }; xdcclarge = derive2 { name="xdcclarge"; version="0.1.0"; sha256="1j8wsidwmfjygqlwavxinv4bqc6rddy42jdmlknsjfrrs49yj8kn"; depends=[nlshrink Rcpp RcppArmadillo]; }; xergm_common = derive2 { name="xergm.common"; version="1.7.8"; sha256="03mjpafwfkmyj5ba84jydap9rp0i602izjlbd511xbxcw6dx2k0b"; depends=[ergm network]; }; xesreadR = derive2 { name="xesreadR"; version="0.2.3"; sha256="1pvdx0mxg2f885bhy4hb3kqzcgva4q7hzzaipkfzyi5lnjdsbc81"; depends=[bupaR data_table dplyr lubridate purrr stringr tidyr XML xml2]; }; - xfun = derive2 { name="xfun"; version="0.30"; sha256="1vn0cbskyrk8ww9yx75jni9s684yv4cvbj643lvg0lg00briry7b"; depends=[]; }; + xfun = derive2 { name="xfun"; version="0.31"; sha256="0dgjkrlwl6rxmvdn6s1xrbiaa53hkfx2s7rqrbrc7c6shbkg6sfi"; depends=[]; }; xgb2sql = derive2 { name="xgb2sql"; version="0.1.2"; sha256="1gw5dw0ck5hip8mv347zaswrggk395bg2hgn02bvqs0d31jhmgvi"; depends=[data_table xgboost]; }; - xgboost = derive2 { name="xgboost"; version="1.5.2.1"; sha256="13mi3rmpxhgm4qbm4xcqml9n5d1xyai2k1mi52i8x60jd5m8s319"; depends=[data_table jsonlite Matrix]; }; + xgboost = derive2 { name="xgboost"; version="1.6.0.1"; sha256="1gafjv6vcpny03lqw8s68xszalsylniavaqwsbzh46vyk4h9mscs"; depends=[data_table jsonlite Matrix]; }; xgxr = derive2 { name="xgxr"; version="1.1.1"; sha256="00fd9n2qivfxg2b7vynssc82afa7nskg4akk6cgxnyhcai5jbmra"; depends=[assertthat binom Deriv DescTools dplyr ggplot2 glue gtable Hmisc labeling magrittr minpack_lm pander png RCurl readr scales stringr tibble]; }; xkcd = derive2 { name="xkcd"; version="0.0.6"; sha256="1z2y0ihn68ppay7xkglhw7djki5654g6z4bbpyy41if57z9q554f"; depends=[extrafont ggplot2 Hmisc]; }; xkcdcolors = derive2 { name="xkcdcolors"; version="1.0"; sha256="07fnjv01r3b951dqca2zs9b9f6hsgbpbpsrggvb8rps53kpid0i7"; depends=[FNN]; }; @@ -18925,18 +18527,16 @@ in with self; { xtermStyle = derive2 { name="xtermStyle"; version="3.0.5"; sha256="1q4qq8w4sgxbbb1x0i4k5xndvwisvjszg830wspwb37wigxz8xvz"; depends=[]; }; xtreg2way = derive2 { name="xtreg2way"; version="1.0.0"; sha256="0wllz0frakmadavgpqhd2b8fiw6wgwh5wzd270czc6cm5bq9gfng"; depends=[MASS Matrix pracma]; }; xts = derive2 { name="xts"; version="0.12.1"; sha256="0b6a7mpyk9aw6axas7nz01gadczprwwfhii01fz31z26z555i06n"; depends=[zoo]; }; - xtune = derive2 { name="xtune"; version="0.1.0"; sha256="0bpf1cx7v7q0a1jip04xd0bjg9ilagrf7wg7a9y0m6wgw7s2b9jn"; depends=[glmnet selectiveInference]; }; xutils = derive2 { name="xutils"; version="0.0.2"; sha256="1h07gs8pj7hn64r35ld1j1zakc243aiiwdrz92viqrg7z75czdzl"; depends=[Rcpp]; }; xwf = derive2 { name="xwf"; version="0.2-3"; sha256="1byj6vjk2abm9j919107xsa3nd40zbsvxaldvv4ml3c47k1fg3kc"; depends=[mgcv]; }; xxIRT = derive2 { name="xxIRT"; version="2.1.2"; sha256="0b8yv8ixmcjiv9hlvpfdknx815smy7df7f2ixifnvhxxafgf1fwq"; depends=[ggplot2 glpkAPI lpSolveAPI reshape2]; }; - xyz = derive2 { name="xyz"; version="0.2"; sha256="13w4sb4pvgciwr8wsz785dafj2k2kpx7znz46r5d32wx88vkycp4"; depends=[Rcpp]; }; yaConsensus = derive2 { name="yaConsensus"; version="1.0"; sha256="1srph1yc8lr00yvx6sjm0br9h2cq94xqb9yjxfb0bqvvmskp6s2s"; depends=[doParallel foreach pheatmap]; }; yaImpute = derive2 { name="yaImpute"; version="1.0-32"; sha256="1zvkrmlj48ahg9jq0fkbn7j603fmmld57yc0gjfas2mqa7cfbvh8"; depends=[]; }; yacca = derive2 { name="yacca"; version="1.4-2"; sha256="197iv7qcbp9xx8kmpwb98acpkgzn9m7sncn6qi7k0chjx78095ws"; depends=[]; }; yager = derive2 { name="yager"; version="0.1.1"; sha256="178ypdr3f0w9rb4ci8q2hshr62b7993m8q6zxc4pf0msq175n1ml"; depends=[lhs MLmetrics randtoolbox]; }; yakmoR = derive2 { name="yakmoR"; version="0.1.1"; sha256="09aklz79s0911p2wnpd7gc6vrbr9lmiskhkahsc63pdigggmq9f7"; depends=[BBmisc checkmate Rcpp]; }; yaml = derive2 { name="yaml"; version="2.3.5"; sha256="0h2ixd95ww12ir13fdzbvjq4lsz6l8hmgv4bbsi89qd0ah2nrpry"; depends=[]; }; - yamlet = derive2 { name="yamlet"; version="0.8.5"; sha256="0yhfyqkbj147sjrm4sc9va1c59ayzh2wxwasaz8vr2ri9qmmk91i"; depends=[csv dplyr encode ggplot2 rlang spork tidyr units xtable yaml]; }; + yamlet = derive2 { name="yamlet"; version="0.8.7"; sha256="19ba0zz2jwqqls78q84373w2swprbnp1znxsp1i096fw6mc21kpm"; depends=[csv dplyr encode ggplot2 rlang spork tidyr units xtable yaml]; }; yamlme = derive2 { name="yamlme"; version="0.1.1"; sha256="1cknx8ndcb9rz1j7z27244vba8hxyh5sa9zwsv6rwk9g1c52vmyg"; depends=[]; }; yap = derive2 { name="yap"; version="0.1.1"; sha256="0m126vpfvlmwkpy14i9wbzr51hb8r6s3wcdm3vp9izfccpnxfxl2"; depends=[lhs randtoolbox]; }; yaps = derive2 { name="yaps"; version="1.2.5"; sha256="0309vc67v5kfbdcah5gnvdqwdxir4k1ik47dw6msw2hvg6lpqvqf"; depends=[circular cowplot data_table ggplot2 ggrepel nloptr plyr Rcpp RcppEigen reshape2 splusTimeSeries tictoc TMB viridis zoo]; }; @@ -18945,6 +18545,7 @@ in with self; { yarrr = derive2 { name="yarrr"; version="0.1.5"; sha256="1258bj7x4icaxfabnnd3fgwydnqbzxkih7zw0sdlwdax3q8fw5c5"; depends=[BayesFactor circlize jpeg]; }; yasp = derive2 { name="yasp"; version="0.2.0"; sha256="0fza8h9y1wmarsmjcvw4r970d6j4ii795pd2h4xh9nlsirv50adi"; depends=[]; }; yatah = derive2 { name="yatah"; version="0.1.0"; sha256="0ayy0h399g3csn106vvq6j4h6w0sgzw33b7gj1hk05nc8hdzrmna"; depends=[ape purrr stringr]; }; + ycevo = derive2 { name="ycevo"; version="0.1.0"; sha256="17zls25h3mq67xmx2zy3npra3bnlacw54cqagyy971gd549cp78a"; depends=[dplyr magrittr Matrix Rcpp RcppArmadillo rlang]; }; yesno = derive2 { name="yesno"; version="0.1.2"; sha256="1n9v8m1wkk9p2ahl7d1khbffxmshv68q1v44v04y4v1k6qjvm0i2"; depends=[]; }; yhat = derive2 { name="yhat"; version="2.0-3"; sha256="00cbzj2bvr2pfspycqyf7jrdqyfg63zx25b6r9k3khafvn0ch7h1"; depends=[boot miscTools plotrix yacca]; }; yhatr = derive2 { name="yhatr"; version="0.15.1"; sha256="18g2cr1kjxnfw6cwzl62ynppfv1zz732kbx18zq8918l85kx6wbw"; depends=[httr jsonlite stringr]; }; @@ -18953,17 +18554,15 @@ in with self; { ymd = derive2 { name="ymd"; version="0.0.1"; sha256="02cd7y28s406yzvax2d47xwrsqyd8mhhb879ywjqfj6lvwf3jvkd"; depends=[]; }; ymlthis = derive2 { name="ymlthis"; version="0.1.5"; sha256="02flsiqzpasyvskzlygllmrc1vbd4cv6yx4cdfiqrcq1806kdrf2"; depends=[crayon fs glue magrittr miniUI purrr rlang rmarkdown rstudioapi shiny shinyBS stringr usethis whoami withr yaml]; }; yonder = derive2 { name="yonder"; version="0.2.0"; sha256="1ilzn17w6skd0dhwxyrgnfzyazafp8hsi8q6pfxz6k16cd668mc0"; depends=[htmltools magrittr shiny]; }; - yorkr = derive2 { name="yorkr"; version="0.0.32"; sha256="15zbbvnjig2czyrnfjfmcgglw4g3k3qj9lnhddk79a4xd9v5ky50"; depends=[dplyr ggplot2 gridExtra reshape2 rpart_plot yaml]; }; + yorkr = derive2 { name="yorkr"; version="0.0.33"; sha256="04iwg31lrlhmvmpsdxgd3aykid58ddc2sjxjk2bxq11fm42z0w0s"; depends=[dplyr ggplot2 gridExtra reshape2 rpart_plot yaml]; }; youngSwimmers = derive2 { name="youngSwimmers"; version="0.0.1"; sha256="02ih66ad8v5qkgyszllkh9319sfd6fqcci4zrvbjr1dfwlwa2ri1"; depends=[data_table lifecycle]; }; youtubecaption = derive2 { name="youtubecaption"; version="1.0.0"; sha256="15cafl7b03xrql2y2ayy6ajf6v764wym3xqs4pbzlf6ncy8qwl5r"; depends=[dplyr magrittr purrr reticulate stringr tibble writexl]; }; yowie = derive2 { name="yowie"; version="0.1.0"; sha256="1sm3dg4sirvlb17ciwldvnc1zzfgwxm38x1k2n99nwa6sygn1nrw"; depends=[tsibble]; }; ypr = derive2 { name="ypr"; version="0.5.2"; sha256="1bbcwy4hngai6cajgcir1g6hdjh9xdpfcxqzm8ba8ikyjfzwn9bw"; depends=[chk ggplot2 lifecycle purrr scales yesno]; }; ypssc = derive2 { name="ypssc"; version="1.1.0"; sha256="0fpph19amj1cafcbh5k6s75pi7nahzgfvnsbs9i5644gv43iavbj"; depends=[dplyr eulerr Peptides readxl spelling stringr svDialogs]; }; yuima = derive2 { name="yuima"; version="1.15.3"; sha256="1l3cxzjm6vffi64dsxryw8y3n8bpkk1yq74a1291z73scjabax34"; depends=[boot calculus coda cubature expm glassoFast mvtnorm Rcpp RcppArmadillo zoo]; }; - yuimaGUI = derive2 { name="yuimaGUI"; version="1.3.0"; sha256="1znwfkhnmv9m32izikziqpgxx8gpw50786r81va808x7q058cp5n"; depends=[DT ggplot2 ghyp plotly quantmod sde shiny shinyBS shinydashboard shinyjs yuima]; }; yulab_utils = derive2 { name="yulab.utils"; version="0.0.4"; sha256="1bj93gnj7j4b7dgkbr5v22rsbwfcw5dvipl5irmidaakvrihd19q"; depends=[]; }; yum = derive2 { name="yum"; version="0.1.0"; sha256="1k9q34n1pzv4c7hp7cd4yhm8v1qv41an8vfh65n4byvyzipxp85y"; depends=[yaml]; }; - yummlyr = derive2 { name="yummlyr"; version="0.1.1"; sha256="0xrk6g58laksz92d8mxck923sk4j92g55szrkxk123wjp5kg9vx6"; depends=[httr jsonlite]; }; zCompositions = derive2 { name="zCompositions"; version="1.4.0-1"; sha256="1rrhja9iaq123r2gqw1bzrn1ri0s3z4wzq8p0sfcr1yb6pv13vik"; depends=[MASS NADA truncnorm]; }; zTree = derive2 { name="zTree"; version="1.0.7"; sha256="005zk6wpchpss6865ki35yawgf668pn70163ah97rnfkhfaswm6y"; depends=[plyr]; }; zalpha = derive2 { name="zalpha"; version="0.3.0"; sha256="04hi5lxgcqzmkbqppp5fv8x7wdgap3bgr8b8pv4pvavzh73jlmxs"; depends=[]; }; @@ -18971,9 +18570,9 @@ in with self; { zcurve = derive2 { name="zcurve"; version="2.1.2"; sha256="0j5adicqvdbvqq70163ibv09qaxzhdrphh4xgjvipvw9akmmcy0j"; depends=[evmix nleqslv Rcpp Rdpack]; }; zdeskR = derive2 { name="zdeskR"; version="0.2.0"; sha256="0kbdkxly20ai3nfwwqj04gncbg1g3sh9gy323hsif919wpid8qzg"; depends=[dplyr httr jsonlite magrittr plyr purrr tidyr]; }; zeallot = derive2 { name="zeallot"; version="0.1.0"; sha256="1sd1igcfnv27pa3bqxlbyxchi562h7grnjg1l7wxx3bwr49i57s3"; depends=[]; }; - zebu = derive2 { name="zebu"; version="0.1.3.0"; sha256="1rlcrvhic110h8r0mqwhkzq8w566jfymxpcwv63bvs7fd8j98vsv"; depends=[foreach ggplot2 iterators plyr reshape2]; }; + zebu = derive2 { name="zebu"; version="0.2.0.0"; sha256="0nd44j2zxsagg9sav3lm8gzbyq8cdk1kfgbn503hb3a58kcqyg0d"; depends=[data_table ggplot2 Rcpp reshape2]; }; zeitgebr = derive2 { name="zeitgebr"; version="0.3.5"; sha256="1h2zx3ah1xdyyag40ragrv7gvpnlzqmappbnjp971dn9khqdxfqs"; depends=[behavr data_table lomb pracma WaveletComp]; }; - zen4R = derive2 { name="zen4R"; version="0.5-3"; sha256="1kw3gx1d1azhxg8rkqib8xvhqfwbxwr6r8gfjw0l9y1c69b6gbni"; depends=[httr jsonlite keyring R6 xml2]; }; + zen4R = derive2 { name="zen4R"; version="0.6"; sha256="1gyd5irb529303x690gc5aqq8cb2ffqb71z6fkr58wp73a0dba1q"; depends=[atom4R httr jsonlite keyring R6 XML xml2]; }; zendeskR = derive2 { name="zendeskR"; version="0.4"; sha256="06cjwk08w3x6dx717123psinid5bx6c563jnfn890373jw6xnfrk"; depends=[RCurl rjson]; }; zenplots = derive2 { name="zenplots"; version="1.0.4"; sha256="1r105ay0p00wfly8z54dg18i1fq7ppvxzri49i7zrlimqawzv19s"; depends=[graph loon MASS PairViz]; }; zeroEQpart = derive2 { name="zeroEQpart"; version="0.1.0"; sha256="1n24nqyl0irpyspwx4b73xy228a84aa8zsn9fcf2lrlni5vyzmm0"; depends=[MASS ppcor]; }; @@ -18990,17 +18589,17 @@ in with self; { ziphsmm = derive2 { name="ziphsmm"; version="2.0.6"; sha256="0lm6m2g9jd1v7gxv4viych8c59phbvz1yly1ydgajl8q251d8n87"; depends=[pracma Rcpp RcppArmadillo]; }; zipsae = derive2 { name="zipsae"; version="1.0.2"; sha256="03kwfpjpwxqlphdy7xyhsf7d0mcg67jhvm7yz4i73ckmjdmq7wrd"; depends=[]; }; zlog = derive2 { name="zlog"; version="1.0.0"; sha256="1d5j31p0h3rrn230087h3ngpvwknlisjv0f1qdbicdj9m177spci"; depends=[]; }; - zmisc = derive2 { name="zmisc"; version="0.2.1"; sha256="10cb1zmzasqxr5sdkqn4hylp7qaxzgdf9gzp0dc97yhgcf5p0i5n"; depends=[]; }; + zmisc = derive2 { name="zmisc"; version="0.2.2"; sha256="154qm0f2ds40gwxqv30nf2px26clkf2lw2y51ak12gxpj08b6mix"; depends=[]; }; zoeppritz = derive2 { name="zoeppritz"; version="1.0-8"; sha256="1711szx9zz17q6pfinyzlyrw7m9772c8ywlixqar2l165bkjalgm"; depends=[]; }; zoib = derive2 { name="zoib"; version="1.5.5"; sha256="0inm7f2pc68ksqxvq12xp9jc99vj7ydylvs24ip12nksbj5k1n8f"; depends=[abind coda Formula rjags]; }; zoid = derive2 { name="zoid"; version="1.1.0"; sha256="0x37250fq3a3jbl1a2p8zkbacwzhc1xylk1nnfmx2fcgjif40lmq"; depends=[BH compositions gtools Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; zoltr = derive2 { name="zoltr"; version="0.5.1"; sha256="12zh7y3pwidclscgvd0b0iaqq9j5y8mc8xd6pz4vs0jy5qs3ahar"; depends=[base64url dplyr httr jsonlite magrittr MMWRweek mockery readr rlang webmockr]; }; zonator = derive2 { name="zonator"; version="0.6.0"; sha256="1plxchpd4ypp36phl13pi9yvlrqi3lk83lv5rldrhdqynhcgfw2k"; depends=[ggplot2 raster RColorBrewer reshape2 rgdal]; }; zonebuilder = derive2 { name="zonebuilder"; version="0.0.2"; sha256="0mxf3dz0d6bi5wwjilqivdxhy5ypnq5svky8zygha0clv45l4dmn"; depends=[RColorBrewer sf]; }; - zoo = derive2 { name="zoo"; version="1.8-9"; sha256="18vjywalpgzqyk66gajb8x1yp8avdaaf11ykynld9fd8cy82bgmp"; depends=[lattice]; }; + zoo = derive2 { name="zoo"; version="1.8-10"; sha256="0izd66dywq6qd62hdp64apncainrrb9mgmm19wf6a8jc03c858n9"; depends=[lattice]; }; zooaRch = derive2 { name="zooaRch"; version="1.2"; sha256="0grc378xppv0303sf4flfqz5002vq5a23nzbq4bsff41rww7dihc"; depends=[ggplot2]; }; zooimage = derive2 { name="zooimage"; version="5.5.2"; sha256="0ck8w0zb9l1n9xvjwqshq9q9l8pigy3yslq2hnfbgcwk17kk9mp8"; depends=[digest DT filehash jpeg MASS mda mlearning png shiny svDialogs svMisc tiff]; }; - zoolog = derive2 { name="zoolog"; version="0.4.1"; sha256="1wxxxscw4ji4p4599vdw6vcrkqm0g75x1gh13m4758lb51wav9ks"; depends=[Rdpack stringi]; }; + zoolog = derive2 { name="zoolog"; version="1.0.1"; sha256="00fi7czfwr0ll9070w3ijskd0xvilj02gy8wkgqzzrlilij8ah7p"; depends=[Rdpack stringi]; }; zoom = derive2 { name="zoom"; version="2.0.4"; sha256="03f5rxfr6ncf1j6vpn7pip21q7ylj4bx0a5xphqb6x6i33lxf1g5"; depends=[]; }; zoomGroupStats = derive2 { name="zoomGroupStats"; version="0.1.0"; sha256="0gndiq92cy6gi7f833hdjvqii3cn83wz5rjvygcvjl3dw4pwv966"; depends=[data_table dplyr lubridate magick openxlsx paws pbapply stringr syuzhet]; }; zoon = derive2 { name="zoon"; version="0.6.5"; sha256="02y29vr2yn8al69km8faiqrwjrc1r3hsvw3dg8lwjr65cxw1krip"; depends=[dismo plyr randomForest raster RCurl rfigshare rgdal roxygen2 rworldmap sp testthat]; }; @@ -19011,206 +18610,428 @@ in with self; { zyp = derive2 { name="zyp"; version="0.10-1.1"; sha256="03cxpkfbhrx1fy8l0dl9a13ghz93cqq6877wa8rig09ksdiivaw9"; depends=[Kendall]; }; zzlite = derive2 { name="zzlite"; version="0.1.2"; sha256="0vi1slx2s4r5zf82lazqv0c3m12xq73wlgsbz6af4y00h0bkr3ps"; depends=[httr jsonlite]; }; ACSNMineR = derive2 { name="ACSNMineR"; version="0.16.8.25"; sha256="0gh604s8qall6zfjlwcg2ilxjvz08dplf9k5g47idhv43scm748l"; depends=[ggplot2 gridExtra scales]; broken = true; }; + AGread = derive2 { name="AGread"; version="1.1.1"; sha256="0ar0cnlaxxmvn2gdydmm9vr45xjhx06kky556d17l93k0xwfvzm3"; depends=[anytime binaryLogic data_table DescTools dplyr GGIR lubridate magrittr PAutilities Rcpp reshape2 rlang seewave stringr]; broken = true; }; + AHMbook = derive2 { name="AHMbook"; version="0.2.3"; sha256="0ygdxyliq9wmpmjgmq1wb6a1g9pv6jl0lzaz7545gzwn7nwdw1y7"; depends=[coda mvtnorm plotrix RandomFields raster sp spdep unmarked]; broken = true; }; + ALS = derive2 { name="ALS"; version="0.0.6"; sha256="1swrn39vy50fazkpf97r7c542gkj6mlvy8gmcxllg7mf2mqx546a"; depends=[Iso nnls]; broken = true; }; + AMAP_Seq = derive2 { name="AMAP.Seq"; version="1.0"; sha256="0z0rrzps6rm58k4m1ybg77s3w05m5zfya4x8ril78ksxsjwi3636"; depends=[]; broken = true; }; + AMOEBA = derive2 { name="AMOEBA"; version="1.1"; sha256="1npzh3rpfnxd4r1pj1hm214sfgbw4wmq4ws093lnl7pvsl0q37xn"; depends=[rlecuyer snowfall spdep]; broken = true; }; AMORE = derive2 { name="AMORE"; version="0.2-16"; sha256="0vw6hhykg1r6xxja6d4zb2y00x7pfkmhcq9xkidz8p4arinb7xnl"; depends=[]; broken = true; }; ANTs = derive2 { name="ANTs"; version="0.0.15"; sha256="04iiajq8fi40zzjjg98h75slm848zcrazzg16ll4cnqd8wsd9d3n"; depends=[gtools Kendall lme4 Rcpp RcppArmadillo RcppEigen rstudioapi]; broken = true; }; + ASPBay = derive2 { name="ASPBay"; version="1.2"; sha256="0b1qpyvmj7z10ixrmdxp42bj9s72c1l9rihzmv9p58f12a5aznjz"; depends=[hexbin Rcpp RcppArmadillo]; broken = true; }; + AUCRF = derive2 { name="AUCRF"; version="1.1"; sha256="00d7jcg2dyvf7sc9w7vxxd85m7nsbcmfqsavrv236vxfpfc9yn7i"; depends=[randomForest]; broken = true; }; AWAPer = derive2 { name="AWAPer"; version="0.1.46"; sha256="02n662wvd8qwshfmj9qfff730qs6ls82hkdsphw05jj6llddi4k5"; depends=[chron Evapotranspiration maptools ncdf4 raster sp xts zoo]; broken = true; }; + AdapEnetClass = derive2 { name="AdapEnetClass"; version="1.2"; sha256="01k3mj4g1ckbng7wkzzn9h0k9yf01cpnnkly0sjda574c5jhj0rc"; depends=[glmnet imputeYn lars quadprog]; broken = true; }; + AdjBQR = derive2 { name="AdjBQR"; version="1.0"; sha256="14437pyz9v09ighwqvy1lcw0vfp2gaqzs9nzrb1gkfbb8ndzjw7k"; depends=[coda MHadaptive quantreg survival]; broken = true; }; + AllPossibleSpellings = derive2 { name="AllPossibleSpellings"; version="1.1"; sha256="0ksfm2pfjka3yjgcd257v7sns1niaylsfxvhhh2jwdi016cpdw10"; depends=[]; broken = true; }; AlphaVantageClient = derive2 { name="AlphaVantageClient"; version="0.0.1"; sha256="095m850v945lw7i3qd812p28srdb5hdk9h52zf6bkr166zai1ni0"; depends=[httr xts]; broken = true; }; AnDE = derive2 { name="AnDE"; version="1.0"; sha256="1yil8ab50wvlqmdla9kmfba8vfgy5r694r6igb58s6vnmld78yf2"; depends=[discretization foreign functional stringr]; broken = true; }; AnalyzeFMRI = derive2 { name="AnalyzeFMRI"; version="1.1-24"; sha256="0qkhw6bik6s82h4yb5bashqjl8wfxarivvz6r5ffn9cgrvlwyahd"; depends=[fastICA R_matlab]; broken = true; }; AnimalAPD = derive2 { name="AnimalAPD"; version="1.0.0"; sha256="1csa6disrg11hpxg4zw0jay15srw9lsgbhl1xgl7hpdr3nqsv3s7"; depends=[activityGCMM brms circular ggplot2 gridExtra loo overlap]; broken = true; }; AnnotLists = derive2 { name="AnnotLists"; version="1.2"; sha256="1g2khb2ggniwg2zcjamsm3bxyrl2zabvk540b5vyy9am9k83m1g9"; depends=[]; broken = true; }; + AntWeb = derive2 { name="AntWeb"; version="0.7"; sha256="1ykfg3zzjdvjppr2l4f26lx00cn5vaqhhz1j1b5yh113ggyl40qw"; depends=[assertthat httr leafletR plyr rjson]; broken = true; }; + BAEssd = derive2 { name="BAEssd"; version="1.0.1"; sha256="04wkhcj4wm93hvmfnnzryswaylnxz5qsgnqky9lsx4jqhvg340l6"; depends=[mvtnorm]; broken = true; }; BALD = derive2 { name="BALD"; version="1.0.0-3"; sha256="1azyqami07g3ax60j0ws3d1qha65k0svn2v5c9pisni0qch5xql0"; depends=[lattice logspline rjags]; broken = true; }; BCA = derive2 { name="BCA"; version="0.9-3"; sha256="0ksd6b0ykydgdn33x29bwwqkrp23cvdj3imps0l6qs1p4465j5nf"; depends=[car clv flexclust Rcmdr RcmdrMisc rpart]; broken = true; }; - BCT = derive2 { name="BCT"; version="1.1"; sha256="058iir5mhgc7zy1nha8g6299ya9jvg1skxj3flgn3b97snjx5qky"; depends=[igraph Rcpp stringr]; broken = true; }; + BCellMA = derive2 { name="BCellMA"; version="0.3.4"; sha256="1njprs7ksv0w18ffs0agz0290aa2akw48225iaa3bjhbl08dpidl"; depends=[ggplot2 reshape2]; broken = true; }; BIS = derive2 { name="BIS"; version="0.2.1"; sha256="0mngmchgc46wc9a7ksyqrvj6k46nm4ih7x69k3xijfia9bgkym0v"; depends=[dplyr readr rvest tidyr xml2]; broken = true; }; + BKPC = derive2 { name="BKPC"; version="1.0.1"; sha256="17gmhf6qq8jn2xzkqvjq60xzy0slz6kgfpd0d6hlpnf30ww7q923"; depends=[kernlab]; broken = true; }; + BMS = derive2 { name="BMS"; version="0.3.4"; sha256="0z3mk1xd1fphf80kdbashkn04jwsr2bghms4d7nav3pw73q41wql"; depends=[]; broken = true; }; BNN = derive2 { name="BNN"; version="1.0.2"; sha256="13h9xqfdqnc9d8brx1xlmvb4nrkpwncwjz98y7i3wijih85wkikd"; depends=[mvtnorm]; broken = true; }; + BOG = derive2 { name="BOG"; version="2.0"; sha256="0lz5af813b67hfl4hzcydn58sjhgn5706n2h44g488bks928k940"; depends=[DIME hash]; broken = true; }; + BPmodel = derive2 { name="BPmodel"; version="1.1.2"; sha256="1fmiz06ci3x4ljaap6famnz82mrf2rcdg4d282x6wghpy4yv4afa"; depends=[Deriv dplyr extraDistr gamlss gamlss_dist ggplot2 pracma]; broken = true; }; + BayHaz = derive2 { name="BayHaz"; version="0.1-3"; sha256="08ilghlkgyma5758yw7mdgqycqcillqmx73knzzdlg2kzc77dvg6"; depends=[]; broken = true; }; + BaySIC = derive2 { name="BaySIC"; version="1.0"; sha256="023ji6q1nvksmhp3ny8ad39xxccc0a1rv9iaiaagwavgzzc0pjd9"; depends=[fields poibin rjags]; broken = true; }; BayesBEKK = derive2 { name="BayesBEKK"; version="0.1.0"; sha256="0fykcmf54820krwy7q573gmlcrx96i94knx7rgzc83i287lnpnfg"; depends=[coda MTS mvtnorm]; broken = true; }; BayesValidate = derive2 { name="BayesValidate"; version="0.0"; sha256="1gli65avpkb90asx92l1yjbwaxcsyb920idyjwgd2sl2b3l657ly"; depends=[]; broken = true; }; + BigDataStatMeth = derive2 { name="BigDataStatMeth"; version="0.99.32"; sha256="0iz6pzlhkziwdwv80sy9zcxfvkxxjhqmgn7lk7lv1mkhywqkd9jk"; depends=[beachmat BH data_table Rcpp RcppEigen RcppParallel RCurl rhdf5 Rhdf5lib RSpectra]; broken = true; }; BigTSP = derive2 { name="BigTSP"; version="1.0"; sha256="1jdpa8rcnrhzn0hilb422pdxprdljrzpgr4f26668c1vv0kd6k4v"; depends=[gbm glmnet randomForest tree]; broken = true; }; + BinQuasi = derive2 { name="BinQuasi"; version="0.1-6"; sha256="0jf7zf3yqr2kgcm6h35234x2dqf65d2dzsh63b4q8m5l36r77k59"; depends=[BiocGenerics csaw edgeR GenomicAlignments GenomicRanges IRanges mgcv pracma quadprog RMySQL Rsamtools S4Vectors SummarizedExperiment]; broken = true; }; BioMedR = derive2 { name="BioMedR"; version="1.2.1"; sha256="0l3nmnqv0gzkbby4fhajbba910zpnbyckvxwds353pn54g9pcry7"; depends=[Biostrings ChemmineR fmcsR GOSemSim MASS org_Hs_eg_db pls randomForest rcdk RCurl rjson]; broken = true; }; + CARS = derive2 { name="CARS"; version="0.2.2"; sha256="18l2bhfwma24q1zg1y1xmlcmnbzjqmmny3h7s179kslagnh3kmsj"; depends=[np]; broken = true; }; CATkit = derive2 { name="CATkit"; version="3.3.3"; sha256="01q2ssyg0jcjgahaslfgpakjsv2wil654lc6xrg5xbbrkx7ccb90"; depends=[assertr CombMSC Hmisc magic MASS png rtf season signal]; broken = true; }; CCpop = derive2 { name="CCpop"; version="1.0"; sha256="10kgw3b98r0kn74w89znq6skgk8b3ldil6yb0hn5rlcf6lazjzca"; depends=[nloptr]; broken = true; }; CDSeq = derive2 { name="CDSeq"; version="1.0.8"; sha256="06pjp9hn9ziz4wgkaj0r0zzw69r7635j10rmnl331abc4mchpazy"; depends=[Biobase clue dirmult doParallel dplyr foreach ggplot2 ggpubr gplots iterators magrittr MASS Matrix matrixStats qlcMatrix Rcpp RcppArmadillo RcppThread rlang Seurat]; broken = true; }; + CEC = derive2 { name="CEC"; version="0.10.3"; sha256="0yypiy5xxrlckly4qpnf1wxg4hwza4y4da6y0jz4ldz918vskaci"; depends=[]; broken = true; }; + CEOdata = derive2 { name="CEOdata"; version="1.0.4"; sha256="1b6a8q568cyidlwgfw29192l20m2xad3qdwn5li2mjgvwsg08cq5"; depends=[dplyr haven jsonlite stringr urltools]; broken = true; }; CIMTx = derive2 { name="CIMTx"; version="1.1.0"; sha256="0091qdh10nxvzm4xxw0vw6k5pa7pi5mdfi5b9msfqfvzq00gyjfx"; depends=[arm BART cowplot doParallel dplyr foreach ggplot2 magrittr Matching metR mgcv nnet stringr SuperLearner tidyr tmle twang WeightIt]; broken = true; }; + CISE = derive2 { name="CISE"; version="0.1.0"; sha256="10mbi4v8dfdc9ngnrrmxpng8fnig5m8nv7799jksbcf6pnj8yv51"; depends=[far gdata glmnet MASS Matrix rARPACK]; broken = true; }; CLSOCP = derive2 { name="CLSOCP"; version="1.0"; sha256="0rkwq9rl2ph4h5zwb2i3yphjyzxmh6b6k23a8gcczycx6xdq4yhw"; depends=[Matrix]; broken = true; }; + CMatching = derive2 { name="CMatching"; version="2.3.0"; sha256="0q0hplhsamj46z7g6pa7yg1bap5822ka1419yhcip551djhvnpmv"; depends=[lme4 lmtest Matching multiwayvcov]; broken = true; }; + CNOGpro = derive2 { name="CNOGpro"; version="1.1"; sha256="1frsmhfqrlg1vsa06cabqmrzngq4p5gqwyb9qgnsgg81a9ybm6l8"; depends=[seqinr]; broken = true; }; + COBRA = derive2 { name="COBRA"; version="0.99.4"; sha256="1r1cw12d7c148pcgcg08bfsr1q1s736kfpyyss6b4d7ny7wgmqy4"; depends=[]; broken = true; }; + CPE = derive2 { name="CPE"; version="1.5.2"; sha256="1m6v104hhxl12zc6lmwm2g5jh3ppyi0m18m1zl30xcid6agayq6v"; depends=[rms survival]; broken = true; }; + CRAC = derive2 { name="CRAC"; version="1.0"; sha256="0vnqmmmwakx5jnzqp20dng35p7rvmz3ypm2m7bs41m8nhh2wq1xa"; depends=[]; broken = true; }; + CTD = derive2 { name="CTD"; version="1.1.0"; sha256="0rc8i01r3fxld01qliybmbifgb5vb55dwk5arzgv95mrxsrbs4ml"; depends=[igraph]; broken = true; }; + CVTuningCov = derive2 { name="CVTuningCov"; version="1.0"; sha256="1bwzis82lqwcqp2djy4bnd3vvjr47krlv3pdc5msh12wcs0xhs7n"; depends=[]; broken = true; }; + CVarE = derive2 { name="CVarE"; version="1.1"; sha256="132bsqvdhalifn47xka23ikas1axxkg4jw8yja6ba8dflb8r753i"; depends=[mda]; broken = true; }; + CensSpatial = derive2 { name="CensSpatial"; version="2.59"; sha256="19q5s16hfw4dkp6j25v0z7g60zmz0fw9mxyiv7nb2k3k39iypgzm"; depends=[geoR lattice moments msm mvtnorm numDeriv optimx psych raster Rcpp tlrmvnmvt tmvtnorm]; broken = true; }; ChoiceModelR = derive2 { name="ChoiceModelR"; version="1.2"; sha256="0dkp3354gvrn44010s8fjbmkpgn1hpl4xbfs5xslql8sk8rw0n2c"; depends=[]; broken = true; }; + CityPlot = derive2 { name="CityPlot"; version="2.0"; sha256="0lskgxmagqjglvpq39hgbygkf4qp28i2bj6b4m2av1s3pzb4465g"; depends=[]; broken = true; }; ClimDown = derive2 { name="ClimDown"; version="1.0.8"; sha256="0qcag9jwvhi9yss55wy5jxabrvym9hljn1fs5gfkzjs5hiwv3gxv"; depends=[abind fields foreach ncdf4 PCICt seas udunits2]; broken = true; }; + ColorPalette = derive2 { name="ColorPalette"; version="1.0-1"; sha256="1dsj5njikx3qm2lnamqqg4qgwwyr11fwx9s5sdi7dkfx3nmf6dac"; depends=[]; broken = true; }; CombMSC = derive2 { name="CombMSC"; version="1.4.2.1"; sha256="1jxf59hs1px271im2dwc1653y9pfp79gwmacafcva224bvh5vi49"; depends=[]; broken = true; }; + CommunityCorrelogram = derive2 { name="CommunityCorrelogram"; version="1.0"; sha256="1wkrm5lil595sc4ih3qsf4sgvfipzlav0n7339ixqw9zxm2pg4nj"; depends=[vegan]; broken = true; }; + CompRandFld = derive2 { name="CompRandFld"; version="1.0.3-6"; sha256="1yr1d97l6yc07jwh30j26gda15pjfcwx2z3w55dh3nr15vds0qcp"; depends=[fields mapproj maps RandomFields scatterplot3d spam]; broken = true; }; ConfoundedMeta = derive2 { name="ConfoundedMeta"; version="1.3.0"; sha256="17l6dfff2v0a4p022qclrmkzi78ga9adkgxgrgk9imz0n9m9424d"; depends=[ggplot2 metafor]; broken = true; }; + CopyDetect = derive2 { name="CopyDetect"; version="1.3"; sha256="1g3bwd805h62x93xvvn67acf9v6vn7s7ghxpvjhwcfdfj7fwzh6l"; depends=[mirt]; broken = true; }; + CovSelHigh = derive2 { name="CovSelHigh"; version="1.1.1"; sha256="0dvvpkqml2k00gicpgp475z1rjspq3s37ys1mam29k54qlshhny6"; depends=[bartMachine bindata bnlearn doParallel doRNG foreach glmnet MASS Matching randomForest tmle xtable]; broken = true; }; CreditMetrics = derive2 { name="CreditMetrics"; version="0.0-2"; sha256="16g3xw8r6axqwqv2f0bbqmwicgyx7nwzff59dz967iqna1wh3spi"; depends=[]; broken = true; }; + CreditRisk = derive2 { name="CreditRisk"; version="0.1.3"; sha256="09ks8xlsrbp3an1drcwmmd6df4fsfz61z21ma2p62a1pk0bnc86c"; depends=[fOptions]; broken = true; }; CytobankAPIstats = derive2 { name="CytobankAPIstats"; version="2.0"; sha256="0xczcgaxd8dv6fd1j5c8y4il852lq8859d1y16sxs8a3gqn9fbz2"; depends=[CytobankAPI pheatmap shiny shinyFiles xlsx]; broken = true; }; + DBGSA = derive2 { name="DBGSA"; version="1.2"; sha256="04zqh9y3nqcdzs5jn8aaq5idy9zl450ikvl788xs860wlg692qv2"; depends=[fdrtool]; broken = true; }; + DCGL = derive2 { name="DCGL"; version="2.1.2"; sha256="1dhkdvdglpsr0fzrfrrr6q76jhwxgrcjsiqn56s082y7v366xvs4"; depends=[igraph limma]; broken = true; }; + DEEPR = derive2 { name="DEEPR"; version="0.1"; sha256="0q8970q3gpjxwxdf2bkhpnqrxpm00w27b20a9sn9vv314rn1n7s8"; depends=[dirmult]; broken = true; }; DET = derive2 { name="DET"; version="3.0.1"; sha256="0r2q1r4wc4nhhrr9bllxsp2w6ajja61mh34dyijjsfchx4025ljb"; depends=[doParallel pROC]; broken = true; }; + DPWeibull = derive2 { name="DPWeibull"; version="1.8"; sha256="05sasi42cakq0k3syvn2hnvb0sl2dflw6x98riwgrjvsmnw6bh2g"; depends=[binaryLogic prodlim Rcpp RcppArmadillo survival truncdist]; broken = true; }; DStree = derive2 { name="DStree"; version="1.0"; sha256="14wba25ylmsyrndh007kl377dv4r34wr1555yxl6kyxrs4yg3jir"; depends=[Ecdat pec Rcpp rpart rpart_plot survival]; broken = true; }; + DSviaDRM = derive2 { name="DSviaDRM"; version="1.0"; sha256="1hj2pgnldrpgapwwz1kf4k6mvyzwdvb1i6czd7sbimsx5hafwps8"; depends=[igraph ppcor]; broken = true; }; Data2LD = derive2 { name="Data2LD"; version="3.2.1"; sha256="1y6nyysm96q5mlrcl0vkjhq5lr624n2266xpmyl4ck0h1dhjb6bz"; depends=[deSolve fda knitr rmarkdown]; broken = true; }; DataEntry = derive2 { name="DataEntry"; version="0.9-3"; sha256="0gfsg7wfwy88x7y1dwpgwi6fkizjnhrzj0a5ij70y4a4sjmyiy55"; depends=[digest gWidgets2 gWidgets2RGtk2 RGtk2]; broken = true; }; DeducerSpatial = derive2 { name="DeducerSpatial"; version="0.7"; sha256="0133qk3yjcifyha7c4pqr5s0hmbci72bzgil2r0sxjmrljs3q727"; depends=[Deducer Hmisc JavaGD maptools OpenStreetMap rgdal scales sp UScensus2010]; broken = true; }; + Demerelate = derive2 { name="Demerelate"; version="0.9-3"; sha256="1bsf09di6nh0hznqx829jnbn3092rya03hnc82cns6rm8d3bn0a9"; depends=[fts mlogit sfsmisc vegan]; broken = true; }; DengueRT = derive2 { name="DengueRT"; version="1.0.1"; sha256="11qfg4l6y3j8qh4dcsz13xjjj1n0q71c9a3c180nm5lgqv0nwb81"; depends=[drc ggplot2 nlme]; broken = true; }; DiPs = derive2 { name="DiPs"; version="0.6.2"; sha256="13n50wakvh7ny342xl007k1dfbwmgzg8kxvgcpfblaypqn48q09f"; depends=[liqueueR mvnfast plyr]; broken = true; }; + Dominance = derive2 { name="Dominance"; version="1.2.0"; sha256="1z2gcs7myf90986gzw9g3914ph5cyg6pq6k53h4z566x883q8maz"; depends=[chron igraph]; broken = true; }; DominoPredictionLogging = derive2 { name="DominoPredictionLogging"; version="0.1.0"; sha256="1qzh8inzqk1s6cw9bsl7hazdf6cbfr11zs22723wl4xs31inp1lg"; depends=[lgr rjson uuid]; broken = true; }; DrInsight = derive2 { name="DrInsight"; version="0.1.2"; sha256="1zz9i4aj0ijqfgp30wv0bvrgx2n003dysqg0pm13f7hni27819ff"; depends=[igraph qusage]; broken = true; }; + DunnettTests = derive2 { name="DunnettTests"; version="2.0"; sha256="1sf0bdxays10n8jh2qy85fv7p593x58d4pas9dwlvvah0bddhggg"; depends=[mvtnorm]; broken = true; }; + DySeq = derive2 { name="DySeq"; version="0.22"; sha256="1sx6mg0bcqb5ff6x305k43zx3fwd16rvxc7xb3ai5h3w7fs9zz7y"; depends=[boot MASS TraMineR]; broken = true; }; + DynamicDistribution = derive2 { name="DynamicDistribution"; version="1.1"; sha256="1s78hpj2pxjs4vixin1i816qjbn3wk7b8rd2zdjp4d4rbxifcqf5"; depends=[]; broken = true; }; + EBASS = derive2 { name="EBASS"; version="0.1"; sha256="14hxzj06wrc4ihflr7dqk28fsjwbcizr0jy54vhv0mk1y1gd4201"; depends=[]; broken = true; }; + EBEN = derive2 { name="EBEN"; version="4.6"; sha256="0gcf5b2viiq69vs8bd8nhk65g9sbzgg212w7zpnz4y6cv9jkk5zz"; depends=[]; broken = true; }; + EBglmnet = derive2 { name="EBglmnet"; version="4.1"; sha256="0wlscmimj74alcr8k5h1g3alvlpss4g2ah7zkpd42akam3zb4s5z"; depends=[]; broken = true; }; EHR = derive2 { name="EHR"; version="0.4-5"; sha256="0pxwk5kcj2aap8sj0k1rgsf25hsg1wn9m2wbm2yriscjp70k7rd1"; depends=[data_table lubridate pkdata]; broken = true; }; - EL = derive2 { name="EL"; version="1.0"; sha256="13r7vjy2608h8jph8kwy69rnkg98b2v69117nrl728r3ayc46a18"; depends=[]; broken = true; }; EMC = derive2 { name="EMC"; version="1.3"; sha256="0sdpxf229z3j67mr9s7z4adzvvphgvynna09xkkpdj21mpml23p6"; depends=[MASS mvtnorm]; broken = true; }; + EPP = derive2 { name="EPP"; version="0.3.6.1"; sha256="015hp5f3nrf0hqi11cgsi43a97h9cvny4d75hfjd10zf0fj261h9"; depends=[assertthat curl deldir dplyr flexclust httr leaflet leaflet_extras maptools nngeo osrm plyr rgdal rgeos sf sp]; broken = true; }; + ES = derive2 { name="ES"; version="1.0"; sha256="1rapwf6kryr6allzbjk6wmxpj9idd3xlnh87rwbh6196xb7rp8lv"; depends=[]; broken = true; }; EasyHTMLReport = derive2 { name="EasyHTMLReport"; version="0.1.1"; sha256="1hgg8i7py7bx48cldyc7yydf0bggmbj3fx3kwiv9jh1x5wyh929z"; depends=[base64enc ggplot2 knitr markdown reshape2 scales xtable]; broken = true; }; + EgoCor = derive2 { name="EgoCor"; version="0.1.0"; sha256="197wf7v51qf2wc2gks68v3kpkcv0fmrbj3wrksixh1sphbl52rig"; depends=[geoR lme4 Rdpack shiny SpatialTools]; broken = true; }; + ElectionsLATAM = derive2 { name="ElectionsLATAM"; version="0.1.1"; sha256="0xs3qff1ayq12cr7xszxvzmyihs4p9vsyrwcglll794vj096ylz4"; depends=[boot dplyr foreign lgr magrittr networkD3 R6 readr readxl testthat webshot]; broken = true; }; Eunomia = derive2 { name="Eunomia"; version="1.0.1"; sha256="06a42qsf3nx1pbynikkdvmbhh1rmgnfmiggdn86b3a0ij6cq0p2r"; depends=[DatabaseConnector RSQLite SqlRender]; broken = true; }; + FBN = derive2 { name="FBN"; version="1.5.1"; sha256="0723krsddfi4cy2i3vd6pi483qjxniychnsi9r8nw7dm052nb4sf"; depends=[]; broken = true; }; FDboost = derive2 { name="FDboost"; version="1.0-0"; sha256="1227fda2m8lsq3cndv0xgbgbcfdxhc4fjiyj2dmha1z4sycd7a28"; depends=[gamboostLSS MASS Matrix mboost mgcv stabs zoo]; broken = true; }; + FLSSS = derive2 { name="FLSSS"; version="9.0.5"; sha256="07pm63pzh8zzfy92b186z0isz7qj52y25bs6mmxdvrvqfx0r4xf5"; depends=[Rcpp RcppParallel]; broken = true; }; + FORTLS = derive2 { name="FORTLS"; version="1.0.6"; sha256="0w6a17n1f9vq7j9ajlqkrbxgajhh4qrj5lwfqfkk9g1h5vsr8xn2"; depends=[dbscan Distance ggvoronoi htmlwidgets lidR moments plotly progress raster Rcpp RcppEigen RCSF scales sp tidyr vroom]; broken = true; }; + FactMixtAnalysis = derive2 { name="FactMixtAnalysis"; version="1.0"; sha256="1l4wfp39b7g38vdk6jpd5zq08sjhsg0s71f662aca2rj6l3a2x3r"; depends=[MASS mvtnorm]; broken = true; }; + Familias = derive2 { name="Familias"; version="2.4"; sha256="1k6ig2zfkr1a4s3s85ygixmmsrb5m8vqqab8l5ffkspgjvh4dfz2"; depends=[kinship2 paramlink Rsolnp]; broken = true; }; + FastLZeroSpikeInference = derive2 { name="FastLZeroSpikeInference"; version="2018.12.10"; sha256="0ybpmns7bc1j5xzqjl7734grihmvvpa3h52gixv3h70l0r89d8ys"; depends=[]; broken = true; }; + FitAR = derive2 { name="FitAR"; version="1.94"; sha256="1mkk3kvfq4v0pdabnhbwrk31ji2mv2v6ns16xsvvr1qyg2fnx6hq"; depends=[bestglm lattice leaps ltsa]; broken = true; }; FitARMA = derive2 { name="FitARMA"; version="1.6.1"; sha256="02di0pkz6hh92glpn3li6z9azkcqa64ja8zfpy0mkh1l97mw6jsv"; depends=[FitAR]; broken = true; }; + FlickrAPI = derive2 { name="FlickrAPI"; version="0.1.0.0"; sha256="0bbk7ac4s3gbcjhfg3yz06pxjid3hpd0mqzxzlj5sghn95f479h9"; depends=[jsonlite magrittr RCurl stringr]; broken = true; }; FlywayNet = derive2 { name="FlywayNet"; version="0.1.0"; sha256="00sp3m3iv6qifrkk0rncmzidv15b5fj138g0mai95lp280b040va"; depends=[EasyABC igraph modeest Rcpp]; broken = true; }; FunCluster = derive2 { name="FunCluster"; version="1.09"; sha256="0i73asn1w4s6ydf2ddn5wpr0mwbbxzgmaly1pslarzkx71wk03fz"; depends=[cluster Hmisc]; broken = true; }; + FuzzyToolkitUoN = derive2 { name="FuzzyToolkitUoN"; version="1.0"; sha256="104s45mmlam67vwpshhpns2mgwvmhnbj8w1918jyk2r5mqibwz06"; depends=[]; broken = true; }; GBcurves = derive2 { name="GBcurves"; version="0.1.6"; sha256="1agd7nkgahhwcc5p1zybnd6xws0kr0ggk70aznxfn2nijhw7sqwr"; depends=[curl functional httr magrittr readxl rvest xml2 xts]; broken = true; }; GDELTtools = derive2 { name="GDELTtools"; version="1.5"; sha256="1lhsyf7kd1lnx2dgifmrd89yl95sf9k6ay19dll2p8b9h3vs7hci"; depends=[dplyr plyr TimeWarp]; broken = true; }; - GE = derive2 { name="GE"; version="0.2.6"; sha256="0vxrw08851n6vfqsvr11746l36n8m4sq5qyhgw1yrcj5g4qwnbf9"; depends=[CGE data_tree DiagrammeR]; broken = true; }; + GESTr = derive2 { name="GESTr"; version="0.1"; sha256="1q12l2vcq6bcyybnknrmfbm6rpzcmxgq2vyj33xwhkmm9g2ii9k6"; depends=[gtools mclust]; broken = true; }; + GEint = derive2 { name="GEint"; version="0.1.5"; sha256="179gpq4qjhgx1fhyjdb80rf2ip80zhhfyn8xjgwq1a425163q1y7"; depends=[bindata geepack mvtnorm nleqslv pracma rje speedglm]; broken = true; }; + GExMap = derive2 { name="GExMap"; version="1.1.3"; sha256="1a6i2z9ndgia4v96nkr77cjqnbgxigqbqlibg82gwa0a6pl7r7nz"; depends=[Biobase multtest]; broken = true; }; GGEBiplotGUI = derive2 { name="GGEBiplotGUI"; version="1.0-9"; sha256="0nd0ky3m1avy82z48g7hcysq0y0agxjxdn0g624dkm2w99avxw3j"; depends=[rgl tkrplot]; broken = true; }; GHap = derive2 { name="GHap"; version="2.0.0"; sha256="0br9civfdlksn5xmyrvz2y0knikcd2i175kddxjdqmiyyayckc8w"; depends=[class data_table e1071 lme4 Matrix]; broken = true; }; + GLIDE = derive2 { name="GLIDE"; version="1.0.4"; sha256="0270dsilmmm7llk1dchy4bvps4jbb5zkb1kg8ndgsbl12gsmwx3z"; depends=[doParallel foreach MASS]; broken = true; }; + GPSeqClus = derive2 { name="GPSeqClus"; version="1.2.0"; sha256="1vqbbw6kcqpq6c29yanx3j1ns9x2xr7vvv5fzljw1yswqbfrny7c"; depends=[geosphere htmlwidgets leaflet leaflet_extras plotKML plyr purrr rgdal sp spacetime suncalc]; broken = true; }; GPrank = derive2 { name="GPrank"; version="0.1.4"; sha256="06j5fk427jkp5lphqlx48vfp4fagnxxnv4iyjcha8nvkswcblwgy"; depends=[gptk matrixStats RColorBrewer tigreBrowserWriter]; broken = true; }; + GRPtests = derive2 { name="GRPtests"; version="0.1.2"; sha256="12w0vskf1n31zspk3vjgdlhrjwpsysvwwr0l0vm57j6faqc31i3s"; depends=[glmnet MASS randomForest ranger RPtests]; broken = true; }; + GSAgm = derive2 { name="GSAgm"; version="1.0"; sha256="18bhk67rpss6gg1ncaj0nrz0wbfxv7kvy1cxria083vi60z0vwbb"; depends=[edgeR survival]; broken = true; }; + GWG = derive2 { name="GWG"; version="1.0"; sha256="1va0cd229dhhi1lmrkpwapcm96hrdmxilrmba02xnl7ikhisw0my"; depends=[]; broken = true; }; GeneBook = derive2 { name="GeneBook"; version="1.0"; sha256="1cg8zyr7rbshj3shhzkrxs910dsz4brhh51jvn2qzipzd8dbvxiv"; depends=[dplyr repmis stringr svDialogs]; broken = true; }; + GeoDE = derive2 { name="GeoDE"; version="1.0"; sha256="0wawkzj0344pprm8g884d7by8v74iw96b109rgm7anal48fl30im"; depends=[MASS Matrix]; broken = true; }; GeoLight = derive2 { name="GeoLight"; version="2.0.0"; sha256="1i49hyj3f5rcw0s6j2csnfwc6mnp5zn44vxjnk05wdkpw6dpvx5i"; depends=[changepoint fields maps MASS]; broken = true; }; + GxM = derive2 { name="GxM"; version="1.1"; sha256="02rv8qb46ylk22iqn9cgh63vkyrg9a8nr1d0d3j5hqhi0wyhc41r"; depends=[minqa nlme Rcpp]; broken = true; }; + HAPim = derive2 { name="HAPim"; version="1.3"; sha256="03qy0pxazv3gdq3fck7171ixilb9zi1dwnvc4v7d726g0lvn80pg"; depends=[]; broken = true; }; + HCD = derive2 { name="HCD"; version="0.1"; sha256="158szwhpxwj2dj7sibyh8l92dk9cmy6acapmk8wf5hmfybdpgbsh"; depends=[data_table data_tree dendextend irlba Matrix randnet RSpectra stringr]; broken = true; }; + HDMD = derive2 { name="HDMD"; version="1.2"; sha256="0na0z08fdf47ghfl2r3fp9qg5pi99kvp7liymwxym2wglkwl4chq"; depends=[MASS psych]; broken = true; }; + HIest = derive2 { name="HIest"; version="2.0"; sha256="0ik55kxhzjyg6z6072iz9nfaj7x1nvf91l1kysgvkjccr6jf3y86"; depends=[nnet]; broken = true; }; HRM_curve = derive2 { name="HRM.curve"; version="0.0.1"; sha256="0p3kvldpz347c0cdjkrdm0x2nfj85hm5cp59lirqhq77hf1zfnd5"; depends=[]; broken = true; }; HSAR = derive2 { name="HSAR"; version="0.5.1"; sha256="03ryscvgiiwjcqk6gy3251nqqk43x508kz3ibw35hi84m2s7fsxj"; depends=[Rcpp RcppArmadillo spatialreg spdep]; broken = true; }; HYRISK = derive2 { name="HYRISK"; version="1.2"; sha256="1ngwwzv1pavmscpca3ryzfxzd9rppsh0sm7k4sp2kzc9c0bix4xp"; depends=[kerdiest pbapply reliaR rgenoud sets triangle]; broken = true; }; + HadoopStreaming = derive2 { name="HadoopStreaming"; version="0.2"; sha256="1l9msaizjvnsj1jrpghj4g057qifdgg6vbqhfxhn1fiqdqi2056q"; depends=[getopt]; broken = true; }; + HarmonicRegression = derive2 { name="HarmonicRegression"; version="1.0"; sha256="0inz3l610wl0ibqjyrhfbmwmcfzcmcfhixai4lpkbfsyx93z2i4d"; depends=[]; broken = true; }; + HeckmanEM = derive2 { name="HeckmanEM"; version="0.1.2"; sha256="1q9sad19ccq30ggvcj1byhka4dwa94k6z31ig56vi3031nx2424n"; depends=[MomTrunc mvtnorm PerformanceAnalytics sampleSelection]; broken = true; }; + HiLMM = derive2 { name="HiLMM"; version="1.1"; sha256="09135cwi6kqrvzdlivm86q1dqn6cbbi6nspdm0c2s700jl49pl5z"; depends=[]; broken = true; }; HierO = derive2 { name="HierO"; version="0.2"; sha256="1lqj5grjly4kzxl7wb192aagz2kdvpnjdan2kcg5yxwvg1xcvwv1"; depends=[bitops RCurl rneos tcltk2 XML]; broken = true; }; HierPorfolios = derive2 { name="HierPorfolios"; version="0.1.0"; sha256="0lx10lnslal689ykp7idvngc074yhfx3mkddyrax91djnqsc8aq4"; depends=[cluster fastcluster RiskPortfolios]; broken = true; }; Holidays = derive2 { name="Holidays"; version="1.0-7"; sha256="1srfbhlrf0pd6gzhp4hbic555lb7camk084rn1qz2g7fjvyijqiq"; depends=[TimeWarp]; broken = true; }; + HyPhy = derive2 { name="HyPhy"; version="1.0"; sha256="0994ymv7sswbp8qw3pay34s926cflw2hq2gnchw7rknybvlsrinq"; depends=[ape R_utils]; broken = true; }; HybridMC = derive2 { name="HybridMC"; version="0.2"; sha256="1wgzfyk0scwq9s2sdmc91fj7r4d7zlgwgnj6mdiia8w88ja8kzqy"; depends=[coda]; broken = true; }; + IAbin = derive2 { name="IAbin"; version="1.0"; sha256="1cpj2mx72n4v0yd8jbbnhj2w5d0sc8pw7rc8ahnn1hfa38pwwsyx"; depends=[]; broken = true; }; + IBDhaploRtools = derive2 { name="IBDhaploRtools"; version="1.8"; sha256="1754239pdil6b383mpzyi8zb9l9hzg15dwgn5246v97g1y3mlp5r"; depends=[]; broken = true; }; + IC2 = derive2 { name="IC2"; version="1.0-1"; sha256="03jjb62msxjxdg9l3zd1ns0d2w37hkxy5pnjgaywxw3vfk4zwfj9"; depends=[]; broken = true; }; + ICE = derive2 { name="ICE"; version="0.69"; sha256="04p8lakaha28mdh965w0ppyxfrz5ssi1n9xifvsbn3ihdra67rip"; depends=[KernSmooth]; broken = true; }; ICSsmoothing = derive2 { name="ICSsmoothing"; version="1.2.5"; sha256="08m8p6y5zk54ha3wp5x9xbx6f2xkkqx232hsan1f1s8k9j3q5avd"; depends=[ggplot2 polynom]; broken = true; }; + IGG = derive2 { name="IGG"; version="1.0"; sha256="1cibb9z18xc1zx1813lk14n6p5am84hm7w0hkrsif4j3p89lrwif"; depends=[GIGrvg glmnet MASS Matrix pscl]; broken = true; }; IMAGE = derive2 { name="IMAGE"; version="1.0"; sha256="0xgrja7qhklcmbm0zz5xg94gw5kl05nk3v77l7vxq2d5sk0435g3"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo]; broken = true; }; + IMFData = derive2 { name="IMFData"; version="0.2.0"; sha256="1mlxpsbyvh1zi8ivdblbd58zfv5hflnknbasz5z8xk9911czrn6p"; depends=[httr jsonlite plyr]; broken = true; }; IP = derive2 { name="IP"; version="0.1"; sha256="0ranpsacsl2nm8swc3saw6xh6cdsfdyq58jlpki04kk3hsqbr9p0"; depends=[stringi]; broken = true; }; IPMRF = derive2 { name="IPMRF"; version="1.2"; sha256="1zvwwhiy0p134zvm5ldc92pdd1ap72bhbrlf02rz9m2hlsxmwy67"; depends=[gbm party randomForest]; broken = true; }; IRATER = derive2 { name="IRATER"; version="0.0.1"; sha256="0jxdvjmnmangbqy3ibb5qrj9jz3wrzs0wa1r2gjk4v8vsbk0ipcf"; depends=[coda lattice plyr R2admb]; broken = true; }; IRSF = derive2 { name="IRSF"; version="1.0.3"; sha256="1cq196z2i4by7dfij6w849a49d8dzzcdk5a68nxvmvwq3xskywam"; depends=[abind randomForestSRC survival]; broken = true; }; + ISBF = derive2 { name="ISBF"; version="0.2.1"; sha256="12mk4d0m5rk4m5bskkkng5j6a9dzh8l1d74wh8lnamq7kf9ai9if"; depends=[]; broken = true; }; ISEtools = derive2 { name="ISEtools"; version="3.1.1.1"; sha256="00d6znqz2mfmyi9ijgrg2pwl4lnvvsy00ysa7a7vjq7ip8qvcjfq"; depends=[coda Xmisc]; broken = true; }; ISR3 = derive2 { name="ISR3"; version="0.98"; sha256="0mmpdl9ndlj9i0k3zl7ja0g7y9pm67igw925ld5qnz7a36plygxs"; depends=[]; broken = true; }; IUPS = derive2 { name="IUPS"; version="1.0"; sha256="01pv03ink668fi2vxqybli0kgva13gxhqfdxkwz6qk5rnpzwvf5w"; depends=[boot Matching R2jags]; broken = true; }; + Iboot = derive2 { name="Iboot"; version="0.1-1"; sha256="1fahh86kgv2axj2qg14n87v888sc0kb567s6zr3fh5zv361phwkq"; depends=[]; broken = true; }; IceCast = derive2 { name="IceCast"; version="2.1.0"; sha256="0h3z68lfjw5s51601m17m2gvn12vkwj5gzc70dqzfjmxdkgv3p28"; depends=[coda maptools MASS ncdf4 raster Rcpp RcppArmadillo rgeos sp]; broken = true; }; IgorR = derive2 { name="IgorR"; version="0.8.1"; sha256="1lkiz3gxj8i1xbr5jp69z21rpk7kz3a68h29inp1qa7zi7gikmgx"; depends=[bitops]; broken = true; }; + InfDim = derive2 { name="InfDim"; version="1.0"; sha256="0rh3ch0m015xjkxy08vf9pc6q7azjc6sgicd2j6cwh611pqq39wq"; depends=[]; broken = true; }; + InteractiveIGraph = derive2 { name="InteractiveIGraph"; version="1.0.6.1"; sha256="0srxlp77xqq0vw2phfv7zcnqswi2i5nzkpqbpa5limqx00jd12zy"; depends=[igraph]; broken = true; }; Interpol_T = derive2 { name="Interpol.T"; version="2.1.1"; sha256="1fbsl1ypkc65y6c0p32gpi2a2aal8jg02mclz7ri57hf4c1k09gz"; depends=[chron date]; broken = true; }; + IsoCI = derive2 { name="IsoCI"; version="1.1"; sha256="0r7ksfic6p2v95c953s4gbzzclk4ldxysm8szb8xba1w0nx2izil"; depends=[KernSmooth]; broken = true; }; + JASPAR = derive2 { name="JASPAR"; version="0.0.1"; sha256="0wiyn7cz45hwy9zkvacx28zdrg78q6715cg4r9xgcb39q25s0dcy"; depends=[gtools]; broken = true; }; JMcmprsk = derive2 { name="JMcmprsk"; version="0.9.10"; sha256="1hkylfrr2036vgkxfs98szm3883bmyvvyr0f3a8xygccf3pn28xc"; depends=[dplyr MASS pracma Rcpp reshape2 statmod]; broken = true; }; + JumpTest = derive2 { name="JumpTest"; version="1.1"; sha256="0y375m5477nq0ybnjmfnd8hi45d8jmdnprqvw5f70llpd7bcghh0"; depends=[MASS Rcpp RcppEigen]; broken = true; }; + KANT = derive2 { name="KANT"; version="2.0"; sha256="169j72pmdkcj6hv8qgmc02aps0ppvvl1vnr1hzrb1gsf7zj7bs3y"; depends=[affy Biobase]; broken = true; }; KernelICA = derive2 { name="KernelICA"; version="0.1.0"; sha256="1yq7w24qq23c81a9y0jn36iw7zjbxsj3b3p1rq6yl0lanzda9bsr"; depends=[ICtest inline JADE ManifoldOptim Rcpp RcppArmadillo RcppEigen]; broken = true; }; Knoema = derive2 { name="Knoema"; version="0.1.19"; sha256="16izh1viaqxvhgfxy2g6b9hhvm1n6nbjsj2xd45qwdibl3ly8d0f"; depends=[base64enc digest httr jsonlite lubridate xts zoo]; broken = true; }; KnowGRRF = derive2 { name="KnowGRRF"; version="1.0"; sha256="0nk0baibd184rsg23jx1wg4c2fcaqf8ww7822xrs3w5ym6vwd0rs"; depends=[MASS PRROC randomForest RRF]; broken = true; }; + LAM = derive2 { name="LAM"; version="0.5-15"; sha256="18p8w2n2k4788vpxhdxnmcafwj7a5bvihk530fiynkra3xrn1cr4"; depends=[CDM Rcpp RcppArmadillo sirt]; broken = true; }; LANDD = derive2 { name="LANDD"; version="1.1.0"; sha256="13szkww9nw8zywfrqd8mwgj9csgragm0bx8ia52rcpakpc3hv3hx"; depends=[BH doParallel fdrtool foreach GGally ggplot2 GOSemSim GOstats igraph intergraph Matrix modeest mvtnorm pROC Rcpp]; broken = true; }; LBC = derive2 { name="LBC"; version="1.0"; sha256="027q5dk771a5v7g0il7kcczfyf6cqfb4vb3y0j7gwr02bq4360wm"; depends=[]; broken = true; }; LDOD = derive2 { name="LDOD"; version="1.0"; sha256="0mf2sy01yv57mqicrz08a17m6crigklx6fmw9zpxv7g85qw1iq4v"; depends=[Rmpfr Rsolnp]; broken = true; }; + LEAPFrOG = derive2 { name="LEAPFrOG"; version="1.0.7"; sha256="0z9ahkk4qzc45h1r806frv9cd84vvshvn5mr84gx7qdxljfkfq6h"; depends=[alabama MASS]; broken = true; }; + LICORS = derive2 { name="LICORS"; version="0.2.0"; sha256="0p9y21k1mj1v397jpb5g6jiw7rpzbyfwr4kv2rp3lyxyasy2ykf0"; depends=[fields FNN locfit Matrix mvtnorm RColorBrewer zoo]; broken = true; }; LIHNPSD = derive2 { name="LIHNPSD"; version="0.2.1"; sha256="08ils29vvaq6abkgxbh028vwjw6l6h10cirbnwr65s458zvh4xqv"; depends=[BB Bolstad2 moments optimx Rmpfr sn]; broken = true; }; + LSC = derive2 { name="LSC"; version="0.1.5"; sha256="1nlnwqb24sbgvl96azh8a833ij5xknjr2wr8shs59lm2n63a3ql9"; depends=[fields gam LICORS Matrix RColorBrewer]; broken = true; }; + Lambda4 = derive2 { name="Lambda4"; version="3.0"; sha256="04ikkflfr0nmy1gr3gfldlh2v8mpl82k1wwnzp57d2kn75m9vbxz"; depends=[]; broken = true; }; + LearningRlab = derive2 { name="LearningRlab"; version="2.2"; sha256="15lkcrdfdrip1s4rpsn6kshjzsg1hfryh6lgbiqw9x2h0xvfj4da"; depends=[crayon magick]; broken = true; }; + LocFDRPois = derive2 { name="LocFDRPois"; version="1.0.0"; sha256="0zzdp9wgwr6wn3grimghpj4vq34x37c8bqg8acfzlzih8frqal3r"; depends=[dplyr ggplot2]; broken = true; }; LogitNet = derive2 { name="LogitNet"; version="0.1-1"; sha256="08xi5rpbqkc1b3qj24blv3l0r68wcqbsbjcqxiypm75f3c2irc4i"; depends=[]; broken = true; }; + MAFDash = derive2 { name="MAFDash"; version="0.2.1"; sha256="11d503sw423ddawj8lapxpm59532nxz4b6wh06fn4kqzh0gq1mbj"; depends=[bsplus canvasXpress circlize ComplexHeatmap crosstalk data_table dplyr DT ensurer flexdashboard GenomicRanges ggbeeswarm ggplot2 htmltools IRanges knitr maftools pheatmap plotly readr reshape2 rmarkdown TCGAbiolinks tibble tidyr]; broken = true; }; MAPLES = derive2 { name="MAPLES"; version="1.0"; sha256="0hzsh7z1k7qazpxjqbm9842zgdpl51irg7yfd119a7b2sd3a8li9"; depends=[mgcv]; broken = true; }; MARX = derive2 { name="MARX"; version="0.2"; sha256="1rc87hz719khl8mclbkfdix499nsc4nyihaaavd73nany7iprm02"; depends=[fBasics matlab metRology stabledist tseries]; broken = true; }; + MATTOOLS = derive2 { name="MATTOOLS"; version="1.1"; sha256="1nzrkm3a08rpsd9vplyf33rrkadlrd0ln70k95qxj98ndh2v97px"; depends=[]; broken = true; }; MAc = derive2 { name="MAc"; version="1.1.1"; sha256="1dawqmziffaz8wgcqzwc0yifdq65abgn24vafkrwa9850048c26f"; depends=[]; broken = true; }; + MBSP = derive2 { name="MBSP"; version="1.0"; sha256="0mds6jfqgmnm4saqqqqqfcg8zh4qsvd2503g3ij1sn70f0aakwaj"; depends=[coda GIGrvg MASS Matrix MCMCpack]; broken = true; }; + MC2toPath = derive2 { name="MC2toPath"; version="0.0.16"; sha256="0jdn9wpxavn2wrml907v23mfxr62wwjdh7487ihjj59g434ry7wh"; depends=[RNetCDF]; broken = true; }; MCDM = derive2 { name="MCDM"; version="1.2"; sha256="0r27y9mqvfnv1m0yi2xdyjr4y1s43d5yav960kz2xa732hrrxw01"; depends=[RankAggreg]; broken = true; }; MCMChybridGP = derive2 { name="MCMChybridGP"; version="5.4"; sha256="19nbch76g7jf53nrb1lyzr3zd0z6rpz2k86mq1r9aidwwxh81g7p"; depends=[MASS]; broken = true; }; + MConjoint = derive2 { name="MConjoint"; version="0.1"; sha256="02yik28mhvd4rfqwrprdbdjx9c49ds55fh042bsjajs2ip467w5c"; depends=[]; broken = true; }; + MF = derive2 { name="MF"; version="4.3.2"; sha256="1arnhyqf1cjvngygcpqk2g4d52949rhkjmclbaskyxcrvp62qln0"; depends=[]; broken = true; }; + MFHD = derive2 { name="MFHD"; version="0.0.1"; sha256="0gb8y297y1x03wy46530psmlawyv4z5dydilk36qcmadlk1wx02k"; depends=[deldir depth depthTools fda_usc matrixStats]; broken = true; }; + MGRASTer = derive2 { name="MGRASTer"; version="0.9"; sha256="0jmf2900r56v60981sabflkhid3yrqd9xd7crb56vgfl1qkva9zp"; depends=[]; broken = true; }; MHTcop = derive2 { name="MHTcop"; version="0.1.1"; sha256="1mr8y8brsi37b5qx3fqm0bj90dgknzzwhxfmvyd9kxbxh19whgxq"; depends=[copula matrixStats MCMCpack mvtnorm stabledist]; broken = true; }; + MHadaptive = derive2 { name="MHadaptive"; version="1.1-8"; sha256="1w3bm82v8ahxrf0vqn0pznv7dqn212drinkz8y5kr1flx423l9ws"; depends=[MASS]; broken = true; }; + MImix = derive2 { name="MImix"; version="1.0"; sha256="033gxr0z2xba0pgckiigblb1xa94wrfmpgv3j122cdynjch44j4r"; depends=[]; broken = true; }; + MInt = derive2 { name="MInt"; version="1.0.1"; sha256="1nk02baainxk7z083yyajxrnadg2y1dnhr51fianibvph1pjjkl6"; depends=[glasso MASS testthat trust]; broken = true; }; MLPA = derive2 { name="MLPA"; version="1.10.0"; sha256="1w8vhvs8ri8iyh068g59chz3mn0wapa4jr1wmhjlzwa2c651q2cx"; depends=[]; broken = true; }; MLRShiny = derive2 { name="MLRShiny"; version="0.1.0"; sha256="06zcyz8l4754sjbcql3jd3nq1d2lgj92p5h2bh708z52mww71isw"; depends=[corrgram dplyr forecast psych QuantPsyc shiny shinyAce]; broken = true; }; MLRShiny2 = derive2 { name="MLRShiny2"; version="0.1.0"; sha256="1ygamp0ldz1i0w2xyi205rpd1gd5asw61l36z06j41ghdyiz1lww"; depends=[corrgram dplyr forecast psych QuantPsyc shiny shinyAce]; broken = true; }; + MLVSBM = derive2 { name="MLVSBM"; version="0.2.3"; sha256="15q4n46rjl4702kr6kzdinhqy0qwi1rmz968rpr3rsk6930vpyn8"; depends=[ape blockmodels cluster magrittr R6]; broken = true; }; + MODISSnow = derive2 { name="MODISSnow"; version="0.1.0.0"; sha256="1p0mil074gapw6v8paw9595rzp85hxrfsc65llh0ljalmacwgx04"; depends=[gdalUtils lubridate raster RCurl]; broken = true; }; MRMR = derive2 { name="MRMR"; version="0.1.4"; sha256="0dgbhlynaaka7mdzl6igwgcdzvy6cm2y8mbxaf9pfla8w3z8y0lq"; depends=[ggplot2 lmtest lubridate plyr reshape2]; broken = true; }; - MRPC = derive2 { name="MRPC"; version="3.0.0"; sha256="1lqqfffqvzvp7g3phrjcra0n52lcl2xywibh0vizc85fkkp1clbd"; depends=[bnlearn compositions dynamicTreeCut fastcluster GGally graph gtools Hmisc mice network pcalg plyr psych Rgraphviz sna WGCNA]; broken = true; }; - MTS = derive2 { name="MTS"; version="1.1.1"; sha256="0mb7h4h94a2x104ybkg9836k3szdimlcdccwxjc5naarxhdifv60"; depends=[fBasics fGarch mvtnorm Rcpp RcppEigen]; broken = true; }; + MRsurv = derive2 { name="MRsurv"; version="0.2"; sha256="148myzk6r8whkpv1yv59dmdlr2n8vdwmaww165aw696xfjxwq550"; depends=[mvtnorm survival]; broken = true; }; + MVB = derive2 { name="MVB"; version="1.1"; sha256="0an8b594rknlcz6zxjva6br8f34sgwdi2jil3xh1xzb5fa55dw0f"; depends=[Rcpp RcppArmadillo]; broken = true; }; MVT = derive2 { name="MVT"; version="0.3"; sha256="0vinlv3d5daf8q7pd9xgs51nxz2njgdba5750vygmv883srlzi9d"; depends=[]; broken = true; }; Mapinguari = derive2 { name="Mapinguari"; version="1.0.0"; sha256="1jfqinfr6wkpmkp4jm9ixgawcywm3n1ni03h6zngvx74saz7kd3g"; depends=[dplyr magrittr raster rgdal rlang stringr testthat]; broken = true; }; MaskJointDensity = derive2 { name="MaskJointDensity"; version="1.0"; sha256="0nxhsz57cw96in0sg5xg7sicv920kcnxr2rikn39y2qk4vrw6r78"; depends=[ks MASS np plyr]; broken = true; }; + MasterBayes = derive2 { name="MasterBayes"; version="2.57"; sha256="0f8rc6799nji03slal27gbmprndy3dby0hhsmg2rm9l4ki44vz2y"; depends=[coda genetics gtools kinship2]; broken = true; }; + MatTransMix = derive2 { name="MatTransMix"; version="0.1.15"; sha256="1s2wmhiqn024x9l217xak3wp3dbd3mfrih70xc5mc1b4555f2fbm"; depends=[mvtnorm]; broken = true; }; + MatchLinReg = derive2 { name="MatchLinReg"; version="0.7.3"; sha256="1si0zn6vlgyj08841hfjx8an96a8ipnawl4zbalabmpy7r5bfwx8"; depends=[Hmisc Matching]; broken = true; }; MedOr = derive2 { name="MedOr"; version="0.1"; sha256="1rwc14s16lnzgb78ac2017hv9pss7zw7nw3y7vrvq1qx4fgiw6f8"; depends=[]; broken = true; }; + MetFns = derive2 { name="MetFns"; version="3.2.2"; sha256="15fd2d0yysibi2x43qv6b8i1pa18l7z4n0zpmrqhsmvqkgy8sla0"; depends=[astroFns lubridate plotrix pracma]; broken = true; }; MetaClean = derive2 { name="MetaClean"; version="1.0.0"; sha256="12vgdizggyz6wx08qf34jfhwgpzfrkgq63fvhfgi5gbf1nhma5zz"; depends=[BiocStyle caret fastAdaboost ggplot2 graph kernlab klaR knitr MLmetrics plotrix randomForest reshape2 Rgraphviz rpart xcms]; broken = true; }; + MetaboList = derive2 { name="MetaboList"; version="2.0"; sha256="10skvf14ls4qll0l9p6cig4lmj7138khcksyjvd1pqym9axk3wxn"; depends=[dplyr enviPick ggplot2 scales]; broken = true; }; MetaboLouise = derive2 { name="MetaboLouise"; version="1.0.0"; sha256="1agcp520in0wpxv3x2jvvmv61hasazdymnvjhzl66nwv8lifl98z"; depends=[igraph]; broken = true; }; Meth27QC = derive2 { name="Meth27QC"; version="1.1"; sha256="0ad30svs2kjzmmyvcm0jmv64iyq7slp1x1xl35h2rv1b6zbd4658"; depends=[gplots]; broken = true; }; + Methplot = derive2 { name="Methplot"; version="1.0"; sha256="0aaqss9zfn55qi45jffxkksnkw510npjnkygafx49vl77bkagqh5"; depends=[ggplot2 reshape]; broken = true; }; + MiST = derive2 { name="MiST"; version="1.0"; sha256="0gqln792gixqfh201xciaygmxbafa0wyv5gpbg9w5zkbbv44wrfk"; depends=[CompQuadForm]; broken = true; }; MicroSEC = derive2 { name="MicroSEC"; version="1.1.3"; sha256="1imdxm15f792xw5kc9lhry5jsw739j6y3f2fs64abj22hqxfwypi"; depends=[BiocGenerics Biostrings data_table dplyr GenomeInfoDb GenomicAlignments gtools magrittr openxlsx R_utils Rsamtools stringr tidyr]; broken = true; }; ModelGood = derive2 { name="ModelGood"; version="1.0.9"; sha256="1y99a7bgwx167pncxj00lbw3cdjj23fhhzl8r24hwnhxr984kvzl"; depends=[prodlim]; broken = true; }; + MonteCarloSEM = derive2 { name="MonteCarloSEM"; version="0.0.3"; sha256="1kamhwqw3px5l4pz50zksfsfhjv03wc31xi8v6fl6h9xxmvw52gd"; depends=[lavaan Matrix]; broken = true; }; + MorseGen = derive2 { name="MorseGen"; version="1.2"; sha256="1kq35n00ky70zmxb20g4mwx0hn8c5g1hw3csmd5n6892mbrri8s9"; depends=[]; broken = true; }; MsdeParEst = derive2 { name="MsdeParEst"; version="1.7"; sha256="1zhi1jr30sl7jpsw37lc3akfzixlhm9k2hjkha1pjy5fmd5lddlx"; depends=[MASS moments mvtnorm sde]; broken = true; }; + MuFiCokriging = derive2 { name="MuFiCokriging"; version="1.2"; sha256="09p8wdmlsf21ibqyjigwdipcin3ij0naxcd035hqgfj76v20wiyv"; depends=[DiceKriging]; broken = true; }; + MultiGHQuad = derive2 { name="MultiGHQuad"; version="1.2.0"; sha256="00prkn5awxrh365j1jz312har1x4p8v52a0sqfy00pqr44ncmqqq"; depends=[fastGHQuad Matrix mvtnorm]; broken = true; }; Myrrix = derive2 { name="Myrrix"; version="1.2"; sha256="05x2h4ppjhfm0wlpwyp8ycjg59qj3gv0yqdilxrzb1lkrzln92xb"; depends=[Myrrixjars rJava]; broken = true; }; Myrrixjars = derive2 { name="Myrrixjars"; version="1.0-2"; sha256="1hhfg83z5kl6l250z3lippx3qc68k1wj1qlfzd6m66rgmk699gyl"; depends=[rJava]; broken = true; }; - NADA2 = derive2 { name="NADA2"; version="1.0.1"; sha256="01x3ylrp3kizq9aa0wyaj4jbyr4si2vi8rc3b8r0bllnsl2ia2ix"; depends=[cenGAM coin EnvStats fitdistrplus Kendall mgcv multcomp NADA perm survival survminer vegan]; broken = true; }; NLMR = derive2 { name="NLMR"; version="1.1"; sha256="1m08nm71wbam6d8nj8akwqrm6nq5bvm3v76kdlasdgs7v36xzri6"; depends=[checkmate dplyr fasterize igraph RandomFields raster Rcpp sf spatstat_core spatstat_geom tibble]; broken = true; }; + NORMT3 = derive2 { name="NORMT3"; version="1.0.4"; sha256="147z920qbwf8fgd6a9mn6qjyvbhapc8sl4i7v0pkcpjrs6gkx1sa"; depends=[]; broken = true; }; NPMVCP = derive2 { name="NPMVCP"; version="1.1"; sha256="13jpm46abwziq8859jhl6hg1znk3ws1q7g4vlr2jyri3qa6h22dd"; depends=[]; broken = true; }; + NST = derive2 { name="NST"; version="3.0.6"; sha256="02frl4vpdw14gkgx7g0pi7zl342pkmszh48ggsf3b3qchsj5i1iz"; depends=[ape bigmemory iCAMP permute vegan]; broken = true; }; + NetComp = derive2 { name="NetComp"; version="1.6"; sha256="11rxpdihn575diqfvc7yvxhlr2c19fig4v4a5c6jhqyfdsd60fsv"; depends=[gdata]; broken = true; }; NetData = derive2 { name="NetData"; version="0.3"; sha256="1jf05zwy0c6gmm7kvxlwvai61bz4wpsw7cl0h4i21ipzn1rqxmqj"; depends=[]; broken = true; }; + NetworkReg = derive2 { name="NetworkReg"; version="1.0"; sha256="0ymbigvl1n5348g77jqs1bcda00kdqrm7zifc0ibh5mwsrx6cmds"; depends=[Matrix randnet RSpectra]; broken = true; }; + NoiseFiltersR = derive2 { name="NoiseFiltersR"; version="0.1.0"; sha256="0y90si8f5hsi273g10hw700r72la30hwqlwg59gaq76wqlkm8j0p"; depends=[caret e1071 kknn MASS nnet randomForest rJava rpart RWeka]; broken = true; }; + NormalBetaPrime = derive2 { name="NormalBetaPrime"; version="2.2"; sha256="03il9c57dbwgw38rzckkk0wkc37z8kfdrb7b4k471gm7mqhsm3m3"; depends=[GIGrvg glmnet HyperbolicDist MASS Matrix pracma pscl truncnorm]; broken = true; }; + OData = derive2 { name="OData"; version="0.6"; sha256="10r4kfhdabramjmkgc4fl0bljaiqbvc7rq4byas7q8cmji2czw6f"; depends=[RJSONIO XML]; broken = true; }; + OOmisc = derive2 { name="OOmisc"; version="1.2"; sha256="09vaxn5czsgn6wpr27lka40kzd76jzqgqxavf26ms3m9kkdf83g4"; depends=[]; broken = true; }; + ORCI = derive2 { name="ORCI"; version="1.1"; sha256="0xy5lvz2scz06fphjyhqbdhp4bizmv87a8xykp9dbgx8b4ssnqgz"; depends=[BiasedUrn BlakerCI PropCIs]; broken = true; }; OTclust = derive2 { name="OTclust"; version="1.0.4"; sha256="11mr67zp68wzf1dd6vb3f31g8a430im97sdjsb0w4awqpmjdyyrz"; depends=[class ggplot2 magrittr RColorBrewer Rcpp]; broken = true; }; + Observation = derive2 { name="Observation"; version="0.2.0"; sha256="0v81manzcvv8x9hbf75c8klslzdabha53rasyba91vvcbrshhq6j"; depends=[AGread svDialogs]; broken = true; }; + OjaNP = derive2 { name="OjaNP"; version="1.0-0"; sha256="0xddspnnwlcxh2i66ilh6i920k53y7fv6m1hgj9h28qg2wy0vyah"; depends=[ICS ICSNP Rcpp]; broken = true; }; OligoSpecificitySystem = derive2 { name="OligoSpecificitySystem"; version="1.3"; sha256="17mspf1ph2ybv046zckykfdcbrsiz40hrs6ib5mpwkfnrvsp1w7l"; depends=[tkrplot]; broken = true; }; Omisc = derive2 { name="Omisc"; version="0.1.4"; sha256="1f6aakywjabq0xds5yl70ivr1jmw26zry2m65xszfp8p5mp45c7g"; depends=[copula MASS psych]; broken = true; }; OpenMPController = derive2 { name="OpenMPController"; version="0.2-5"; sha256="00hs8v47pr2d726z8izkfrgmayw147hdm16rr9rw1zs3ad216zjj"; depends=[]; broken = true; }; + OptInterim = derive2 { name="OptInterim"; version="3.0.1"; sha256="1ks24yv5jjhlvscwjppad27iass59da1mls99hlif0li9mvkbvyk"; depends=[clinfun mvtnorm]; broken = true; }; OutlierDC = derive2 { name="OutlierDC"; version="0.3-0"; sha256="1vm3zx4qmj9l0ddfqbksm1qyqzzqrxf93gh4kj52h68zlsfxwv41"; depends=[Formula quantreg survival]; broken = true; }; + PAGI = derive2 { name="PAGI"; version="1.0"; sha256="01j1dz5ihqslpwp9yidmhw86l112l7rfkswmf03vss872mpvyp3f"; depends=[igraph]; broken = true; }; PANDA = derive2 { name="PANDA"; version="0.9.9"; sha256="1sf3c49v4mb3mz2imqlqdbh1iab7bc2pxpi8bmgj2jld133555ip"; depends=[cluster GO_db]; broken = true; }; PCObw = derive2 { name="PCObw"; version="0.0.0"; sha256="1mz9fpd8k0fs14gvs9bhzrpydz200fsg52njaw2nr08184q78r4y"; depends=[Rcpp RcppEigen]; broken = true; }; + PLIS = derive2 { name="PLIS"; version="1.1"; sha256="0b81s7677wglqvv1b5lx8k2iaks09kz0wrl07245a7j2pk9nxv7p"; depends=[]; broken = true; }; POPdemog = derive2 { name="POPdemog"; version="1.0.3"; sha256="0j83c853ligmw8ag4pb0vj46sfn2w2ynh4wvgkabzs688hxxni8r"; depends=[]; broken = true; }; PPTcirc = derive2 { name="PPTcirc"; version="0.2.1"; sha256="07z5561gkn1wafgp9fj1qkj7mqr0n1pda1v6687gh5s170glnlbw"; depends=[circular progress]; broken = true; }; PROTOLIDAR = derive2 { name="PROTOLIDAR"; version="0.1"; sha256="0bz3071b0wlcvh40vl3dyiiixk5avsj6kjjnvlvx264i5g08rij4"; depends=[]; broken = true; }; PRSim = derive2 { name="PRSim"; version="1.4-1"; sha256="15vj8d61vax6nr25wxbwsj48l8zmam6av943fbis2h6gw5cm4rbf"; depends=[goftest homtest lmomco mev splus2R wavScalogram]; broken = true; }; - PVplr = derive2 { name="PVplr"; version="0.1.0"; sha256="1ssmdhq2qczk6n50f8jj4j3nym7jj9bshfc1f29lccvmp7wxdp9a"; depends=[broom cluster dplyr ggplot2 magrittr minpack_lm purrr rlang segmented stlplus tidyr]; broken = true; }; PandemicLP = derive2 { name="PandemicLP"; version="1.3.0"; sha256="12mhzzp5qjdg4krwa7z51lbcyxnp9lyp3jb16bcchmy3ggd1m3cx"; depends=[BH covid19br curl dplyr plotly Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders tidyr]; broken = true; }; ParallelTree = derive2 { name="ParallelTree"; version="0.1.3"; sha256="1h53qwhc63fglm452b3by7f3g6f3hyqwkmwmbdqdb9rv3j4gvnvg"; depends=[ggplot2]; broken = true; }; PatternClass = derive2 { name="PatternClass"; version="2.0.1"; sha256="1xwlk6shms38nqxad3d15254wgnkfzy7jyf5w9bbm96kg05mndbz"; depends=[landscapemetrics raster]; broken = true; }; + PharmPow = derive2 { name="PharmPow"; version="1.0"; sha256="0gabkd8p4zsig9p697lyk8m2jxb5abjk81rpzd5ih1yk1qanhsn5"; depends=[scatterplot3d]; broken = true; }; + PivotalR = derive2 { name="PivotalR"; version="0.1.18.5"; sha256="1xcr7769d9jixq0lbc89jqzzxnnzxb8gjlws2l6cjm40hcid2yc9"; depends=[Matrix semver]; broken = true; }; Plasmode = derive2 { name="Plasmode"; version="0.1.0"; sha256="1qcni9zdckhsnw616jn7rdfd09kbl5wd4hljdja0w73jz1wd1z14"; depends=[arm epiDisplay foreign gbm glm2 lattice latticeExtra lme4 MASS Matrix mgcv nlme nnet RColorBrewer survey survival twang xtable]; broken = true; }; + PlotRegionHighlighter = derive2 { name="PlotRegionHighlighter"; version="1.0"; sha256="0n1nkfr3sdaq6f5p9kgx4slrsvhpdbax3rinrkfkb1vnjj4swj77"; depends=[]; broken = true; }; PoissonSeq = derive2 { name="PoissonSeq"; version="1.1.2"; sha256="1hhx0gv06cp6hm6h36mqy411qn9x15y45crpzbyf8crfs85c6gbg"; depends=[combinat]; broken = true; }; PopGenKit = derive2 { name="PopGenKit"; version="1.0"; sha256="0l4mbm0cyppgvcw2cbimrv29aiciyj00k8wfwcj5zr8sh7fgfhs4"; depends=[]; broken = true; }; PoweR = derive2 { name="PoweR"; version="1.0.7"; sha256="040wc7hxa8y6bm1rs7ip2skdxmmwksxkyb6xzqgdjp8m7a25fppb"; depends=[Rcpp RcppArmadillo]; broken = true; }; + PriorCD = derive2 { name="PriorCD"; version="0.1.0"; sha256="1mb50w2i8sfxjzqd5xnfysn3jnzkkyv6l8algxnp0xpyhcq41pfs"; depends=[dplyr igraph ROCR visNetwork]; broken = true; }; + PropensitySub = derive2 { name="PropensitySub"; version="0.2.0"; sha256="0cx8f3pcn37vrk1d3jbsnpkcdd1pf8xi4v7si4ii4rkxr2iszahd"; depends=[dplyr ggplot2 gridExtra gtable Matching nnet plyr pROC rlang scales survival survminer]; broken = true; }; + PubBias = derive2 { name="PubBias"; version="1.0"; sha256="0dr5dhfx57knrs05pbx9ngg4k2937n8gjzsgd0jfqd8dfxhy051k"; depends=[R_utils rmeta]; broken = true; }; QBAsyDist = derive2 { name="QBAsyDist"; version="0.1.2"; sha256="1yql29npaq9yz02bv3hqf5m2mhscjms7qqf4vlaxm8s665rxcxad"; depends=[ald Deriv GoFKernel locpol nloptr quantreg scdensity zipfR]; broken = true; }; + QualInt = derive2 { name="QualInt"; version="1.0.0"; sha256="1ms96m3nz54848gm9kdcydnk5kn2i8p1rgl2dwn7cqcqblfvsr4j"; depends=[ggplot2 survival]; broken = true; }; QuantPsyc = derive2 { name="QuantPsyc"; version="1.5"; sha256="1i9bh88r8zxndzjqsj14qw64gnvm5a9kvhjhzk3qsrvl3qzjgh93"; depends=[boot MASS]; broken = true; }; + QuantTools = derive2 { name="QuantTools"; version="0.5.7.1"; sha256="1nkf7ihzfwgz7svh1jybgcvqwbim2dqzi00l4m9pma463va4q19d"; depends=[data_table fasttime R6 Rcpp RCurl readxl]; broken = true; }; QuantumClone = derive2 { name="QuantumClone"; version="1.0.0.6"; sha256="1520jgkzp8g7gv7ggqhvlrdnpdyhygqjgsd1my5jq30afdqj6qmp"; depends=[DEoptim doParallel foreach fpc ggplot2 gridExtra NbClust optimx]; broken = true; }; + QuasiSeq = derive2 { name="QuasiSeq"; version="1.0-10-2"; sha256="1mr43vys9l1n859lzlcakjrvjllybgrwl0p8mc28h7m87yjkj670"; depends=[edgeR mgcv pracma]; broken = true; }; + R2019nCoV = derive2 { name="R2019nCoV"; version="0.1.0"; sha256="1959mwacn0zzq0g5ili2v6aqs51rb6qvlsv16xx7qwml8xahf215"; depends=[dplyr ggplot2 jsonlite maps pinyin]; broken = true; }; + R2DGC = derive2 { name="R2DGC"; version="1.0.3"; sha256="0f84fmpf3m2s2p6bllvjs8rgnhwjy54adblv02dq8gakwvb4j2aw"; depends=[]; broken = true; }; + R2ucare = derive2 { name="R2ucare"; version="1.0.0"; sha256="1nh2wf3syxjz9flxhf8x9fd2c2ndn4dha4k34lz1nq5j4qz7wfp1"; depends=[RMark stringr]; broken = true; }; + RAD = derive2 { name="RAD"; version="0.3"; sha256="0nmgsaykxavq2bskq5x0jvsxzsf4w2gqc0z80a59376li4vs9lpj"; depends=[MASS mvtnorm]; broken = true; }; + RAM = derive2 { name="RAM"; version="1.2.1.7"; sha256="0aalswivpjs1glwf4yh3b79lch3n32fyj5xda55h3v7gzs7p0d7f"; depends=[ade4 ape data_table FD ggmap ggplot2 gplots gridExtra labdsv lattice MASS permute phangorn phytools plyr RColorBrewer reshape reshape2 RgoogleMaps scales vegan VennDiagram]; broken = true; }; RAT = derive2 { name="RAT"; version="0.2.0"; sha256="1sc1bmkk9lba1d7jxrw7wy5lcikixalwibsk7mpgv3x30m8mkc55"; depends=[ggplot2 mapproj wosr]; broken = true; }; RAhrefs = derive2 { name="RAhrefs"; version="0.1.4"; sha256="0yd7jbv2x711dnhbvwjjg7qhg8h8bh5564amsv9bkqw661i042m3"; depends=[assertthat httr jsonlite testthat]; broken = true; }; RBestMatch = derive2 { name="RBestMatch"; version="0.1.1"; sha256="1nx1dnhlqi4gad1yw6h91av911wv6dap252hza98dgjysv46spya"; depends=[DiPs mvnfast plyr]; broken = true; }; + RBitmoji = derive2 { name="RBitmoji"; version="0.0.2"; sha256="1v9qj3vmqsvnccsy735nbflmd81183h2flm0f1ckd4kl08r2fr3f"; depends=[getPass httr jsonlite png RCurl]; broken = true; }; RCSL = derive2 { name="RCSL"; version="0.99.95"; sha256="1ngzbhrc74ljhidsf7a17k4hyx0igv2srgbf822gm2wawzsmp0y2"; depends=[ggplot2 igraph mclust NbClust pracma RcppAnnoy Rtsne SingleCellExperiment umap]; broken = true; }; RClone = derive2 { name="RClone"; version="1.0.3"; sha256="1zcb7s88qkpcbkhvawggsckzs5d9s9l9kr2c2njrr86ymq7lgwdj"; depends=[]; broken = true; }; RDFTensor = derive2 { name="RDFTensor"; version="1.3"; sha256="1kfhhn0lb1r61bkgxn7rv1smgk8b7vxbc8y97hdmg5argiywc65i"; depends=[doParallel foreach Matrix pracma]; broken = true; }; + REQS = derive2 { name="REQS"; version="0.8-12"; sha256="049glqhc8h8gf425kmj92jv70917dsigpm37diby0c6hb4jrg8ka"; depends=[gtools]; broken = true; }; REdaS = derive2 { name="REdaS"; version="0.9.3"; sha256="09mmcvzgsxvrcq7sq3pw81pxgb1493p8lx8p5hhz8i42vshza6pn"; depends=[]; broken = true; }; - RFCCA = derive2 { name="RFCCA"; version="1.0.7"; sha256="0v0himz0zz6f52vvc5h33qiij0101zgihzwak8cw5193xzsfmr4g"; depends=[CCA PMA]; broken = true; }; + REndo = derive2 { name="REndo"; version="2.4.3"; sha256="1h7ycxwklb9dbb8q0g9cagjl93jhbjc86l25s1imdp1rqfsv8i6c"; depends=[AER corpcor data_table Formula lme4 lmtest Matrix mvtnorm optimx Rcpp RcppEigen]; broken = true; }; + RGA = derive2 { name="RGA"; version="0.4.2"; sha256="0pjizgvrh0gbjlyxlb3v93nhigg8rpq3mziv1qlp6r0s5y7cmpi9"; depends=[httr jsonlite lubridate plyr]; broken = true; }; + RGBM = derive2 { name="RGBM"; version="1.0-8"; sha256="0xd64g07y808nzs4zvbx6bxdpbj2ndqg6yzc3p0l43pxm4hyxva0"; depends=[doParallel foreach plyr]; broken = true; }; RGCxGC = derive2 { name="RGCxGC"; version="1.1-2"; sha256="03ihqra8q50a98adgxrx8l7js963f41kg2fy3lxzh9zma4gzj62q"; depends=[colorRamps mixOmics ptw Rdpack RNetCDF]; broken = true; }; RGtk2 = derive2 { name="RGtk2"; version="2.20.36.2"; sha256="1m3a3h3yxmr2qpcdyxrwxrdplvhb4rprvd8cnmfwk3zkazd69f9n"; depends=[]; broken = true; }; RM2 = derive2 { name="RM2"; version="0.0"; sha256="1v57nhwg8jrpv4zi22fhrphw0p0haynq13pg9k992sb0c72dx70a"; depends=[msm]; broken = true; }; RNAstructureModuleMiner = derive2 { name="RNAstructureModuleMiner"; version="0.1.0"; sha256="026r1h4z1jdfww0ay9iixa77ax6b19pgp589bbn77xg1vwjjlbsk"; depends=[RRNA]; broken = true; }; RNRCS = derive2 { name="RNRCS"; version="0.2.5"; sha256="19q78l8mh4701vqvr36vqc87n39s5ivzhiy5lvnxbd4dgibk1jr2"; depends=[ggplot2 magrittr rvest xml2]; broken = true; }; + RODM = derive2 { name="RODM"; version="1.1"; sha256="0cyi2y3lsw77gqxmawla5jlm4vnhsagh3ykdgb6izxslc4j2fszx"; depends=[RODBC]; broken = true; }; ROI_plugin_clp = derive2 { name="ROI.plugin.clp"; version="0.4"; sha256="0fzrb4q2mcf3j4d4j8r354n6fyv2rik0ypp01l54zbm8s2r29bwb"; depends=[Matrix ROI slam]; broken = true; }; + ROP = derive2 { name="ROP"; version="1.0"; sha256="12gh83r3hp1qdmw3p5rr1wfhsh90pirx67q456gl9ai6zgd8nkq8"; depends=[ROCR]; broken = true; }; RPCLR = derive2 { name="RPCLR"; version="1.0"; sha256="03kpyszsjb656lfwx2yszv0a9ygxs1x1dla6mpkhcnqw00684fab"; depends=[MASS survival]; broken = true; }; RSCABS = derive2 { name="RSCABS"; version="0.9.5"; sha256="193wbf1v18xv098i6abpglb239788d9gjzqbn8p3aai0la6y1pk3"; depends=[gWidgets2 gWidgets2RGtk2 R2HTML RGtk2]; broken = true; }; RSPS = derive2 { name="RSPS"; version="1.0"; sha256="0ynxhgnxsf27qm8r5d9lyd59zksnc3kvx35hy25vff8j3bg7fqgi"; depends=[gridExtra lattice plyr]; broken = true; }; + RSwissMaps = derive2 { name="RSwissMaps"; version="0.1.0.1"; sha256="16sdd0115793yj74i9m64yfxxn3gkk4nvb0qk2w8j7jjbqhflis0"; depends=[downloader dplyr ggplot2]; broken = true; }; + RVtests = derive2 { name="RVtests"; version="1.2"; sha256="0k7w6ml981zvr5bix197qw4kaf7rz5jqnwqlxf7aryxbm39gk16c"; depends=[glmnet pls spls]; broken = true; }; + RWebLogo = derive2 { name="RWebLogo"; version="1.0.3"; sha256="1n65mlnr163ywjnyyngnigbj0wpgkr38c3nx8hw5r8mwjnf3d617"; depends=[findpython]; broken = true; }; + Rambo = derive2 { name="Rambo"; version="1.1.1"; sha256="036rvjj6gcnf2gg5xl55n5p8j1pzifb9wmlpwnymz1csxgkl477i"; depends=[sna]; broken = true; }; + RandomFields = derive2 { name="RandomFields"; version="3.3.14"; sha256="0c5r7l642cw56km56ijachnqhjh5k0izy03cl14rvbwkpywh09i4"; depends=[RandomFieldsUtils sp]; broken = true; }; + Rbitcoin = derive2 { name="Rbitcoin"; version="0.9.2"; sha256="0ndq4kg1jq6h0jxwhpdp8sw1n5shg53lwa1x0bi7rifmy0gnh66f"; depends=[data_table digest RCurl RJSONIO]; broken = true; }; RcmdrPlugin_FuzzyClust = derive2 { name="RcmdrPlugin.FuzzyClust"; version="1.1"; sha256="1lg6k3h4n45s6wjkl3ycwfngfr2i6mkhirifhbazsvv297bg0iba"; depends=[clue doParallel foreach ggplot2 iterators MASS Rcmdr reshape2 tcltk2 tkrplot]; broken = true; }; + RcmdrPlugin_lfstat = derive2 { name="RcmdrPlugin.lfstat"; version="0.8.3"; sha256="1rcr43dqyb9zw9av3awkz0640vmvhxrafal5brnhqnpg4hfbpma3"; depends=[lfstat Rcmdr]; broken = true; }; RcppMLPACK = derive2 { name="RcppMLPACK"; version="1.0.10-7"; sha256="07vh1wyp2rxhfrb4vi5njchrby99bynd88na8qjxcnbypkgsrhbl"; depends=[BH Rcpp RcppArmadillo]; broken = true; }; + ReCiPa = derive2 { name="ReCiPa"; version="3.0"; sha256="019vlvgxnqqlwghxygfqggzp2b4x2pqzdrbhaa703zdhm58k0n1g"; depends=[]; broken = true; }; RefFreeEWAS = derive2 { name="RefFreeEWAS"; version="2.2"; sha256="1aya34iz5v3xfpj86x9ab998m7fdwl138ly007mgdayacvqi4a6y"; depends=[quadprog]; broken = true; }; + RegClust = derive2 { name="RegClust"; version="1.0"; sha256="1d9w74phw4fgafglc18j7dpmln96fvxnf1kdc9zddgj90p8yfx63"; depends=[]; broken = true; }; + RelValAnalysis = derive2 { name="RelValAnalysis"; version="1.0"; sha256="1jl1gfj44gfkmc1yp6g5wwn4miydwpvxwrg76rnkv9454zrc5pvp"; depends=[zoo]; broken = true; }; Reliability = derive2 { name="Reliability"; version="0.0-2"; sha256="12zsicgbjqih3grbs62pw37x8wlkmnyc7g0yz6bqnfb4ym2yb7fg"; depends=[]; broken = true; }; RevGadgets = derive2 { name="RevGadgets"; version="1.0.0"; sha256="0k17flvax4cq9cvl3fsyv5ya0bndikxbzdmk87v5xz3czf31kk81"; depends=[ape deeptime dplyr ggimage gginnards ggplot2 ggplotify ggpp ggthemes ggtree phytools png reshape tibble tidyr tidytree treeio]; broken = true; }; Rhpc = derive2 { name="Rhpc"; version="0.21-247"; sha256="0r4zikqzkcyyvywxq1s8jcq6h559mxilkmzpnl79781hh537jvii"; depends=[]; broken = true; }; RichR = derive2 { name="RichR"; version="1.0.0"; sha256="0z0ri90jqdmw0vwxd1b4wr9if5cgm1gqpf6g9p1fdvncf4sdi9by"; depends=[magrittr metap plyr reshape2]; broken = true; }; + RidgeFusion = derive2 { name="RidgeFusion"; version="1.0-3"; sha256="10llmrsfpcqrkcbw7zj44kvfy7ywn9rk49n7zplilz8h94zzcmjv"; depends=[mvtnorm]; broken = true; }; + Ridit = derive2 { name="Ridit"; version="1.1"; sha256="02cni6hzf1bsns7vi8vklnhc0pfb5vwqhjnnfnjnnaxpzpsbvdfn"; depends=[]; broken = true; }; + Rothermel = derive2 { name="Rothermel"; version="1.2"; sha256="0zrz2ck3q0vg0wpa4528rjlrfnvlyiy0x1gr5z1aax1by7mdj82s"; depends=[ftsa GA]; broken = true; }; + RtutoR = derive2 { name="RtutoR"; version="1.2"; sha256="19wmi30b5i6zj673d76gxl6j0k3ppfyl5fqrcs0dwmmadrrvbajq"; depends=[colourpicker devtools dplyr DT FSelector ggplot2 ggthemes officer plotly rlang rmarkdown shiny shinyBS shinydashboard shinyjs tidyr]; broken = true; }; + Runiversal = derive2 { name="Runiversal"; version="1.0.2"; sha256="0667mspsjydmxi848c6wsf14gz72bmdj9b3lilma92b7fhqnv7ai"; depends=[]; broken = true; }; Rwinsteps = derive2 { name="Rwinsteps"; version="1.0-1.1"; sha256="0kaxhaa65k1hkhl4kqfxyyk6v967xncrdr5hy8b808zlbqriankc"; depends=[]; broken = true; }; + SAMUR = derive2 { name="SAMUR"; version="0.6"; sha256="0iyv7ljjrgakgdmpylcxk3m3xbm2xwc6lbjvl7sk1pmxvpx3hhhc"; depends=[Matching]; broken = true; }; + SAMURAI = derive2 { name="SAMURAI"; version="1.2.1"; sha256="02fipbjcsbp2b2957x6183z20icv1yly2pd1747nyww9bmpa7ycm"; depends=[metafor]; broken = true; }; SASPECT = derive2 { name="SASPECT"; version="0.1-1"; sha256="1d3yqxg76h9y485pl5mvlx6ls1076f80b320yvx4zxmqq9yxmaba"; depends=[]; broken = true; }; SASxport = derive2 { name="SASxport"; version="1.7.0"; sha256="1na94lxrn8kbhxpiflg14nkdx13rjq9bvvqbxyxh1mq0q7vz7a2l"; depends=[Hmisc stringi]; broken = true; }; SAVE = derive2 { name="SAVE"; version="1.0"; sha256="1m9rrga8x00hlvn0c1jcz6yz14pdm6h3dq14905mq49sw63c7zll"; depends=[coda DiceKriging]; broken = true; }; + SCCS = derive2 { name="SCCS"; version="1.5"; sha256="0ii549y9l59gcdwgb40vx98yxa3hj9rqjwsbax88wjf5adw7c788"; depends=[corpcor dummies fda gnm R_methodsS3 survival]; broken = true; }; + SCPME = derive2 { name="SCPME"; version="1.0"; sha256="0yhsaaa349wbrswcvp7w8c52wzp7rs3528rs4wqa8b3r3fh983mh"; depends=[doParallel dplyr foreach ggplot2 Rcpp RcppArmadillo RcppProgress]; broken = true; }; + SDALGCP = derive2 { name="SDALGCP"; version="0.4.0"; sha256="0az11v9dj3pwl5q2kr2apac06b5hg0msi5r17qrcik1d65k18hm0"; depends=[geoR maptools mapview Matrix pdist PrevMap progress raster sp spacetime spatstat spatstat_geom splancs]; broken = true; }; + SDDE = derive2 { name="SDDE"; version="1.0.1"; sha256="14vql1bypn409w9xcx1jdzff6apiagcz2wng3y24h3mk7yjv9bzy"; depends=[doParallel foreach igraph iterators]; broken = true; }; + SDLfilter = derive2 { name="SDLfilter"; version="2.2.0"; sha256="150rc426q8axf3f1i50k1bjdbac9mcm8yb6zqg6b82qhf2hbb4c4"; depends=[data_table dplyr emmeans ggmap ggplot2 ggsn gridExtra lubridate maps plotKML plyr pracma raster sp trip]; broken = true; }; SDraw = derive2 { name="SDraw"; version="2.1.13"; sha256="1kx8kfga3zspfdgf9vq2lclszrhf3bfwkfhwqri64kn8fdr34jsq"; depends=[covr deldir rgeos sp spsurvey]; broken = true; }; SEAA = derive2 { name="SEAA"; version="0.9.6"; sha256="0f1j8pq3a0liyjxjlc91v8nm5y0fr8fq7qlhdayvkf1fx96srqs2"; depends=[clusterProfiler ggforce ggplot2 ggpubr ggrepel gridExtra org_Hs_eg_db org_Mm_eg_db reshape2 Rsubread tidyr]; broken = true; }; SEMModComp = derive2 { name="SEMModComp"; version="1.0"; sha256="1za67470f13z8jsy3z588c7iiiz993d3vjqrb8v9fann2r6sf1md"; depends=[mvtnorm]; broken = true; }; + SEMrushR = derive2 { name="SEMrushR"; version="0.1.0"; sha256="19prwbh429ra69nz3nx4vzqmb46xssci74rk9mhpnzbi52ycg5gd"; depends=[]; broken = true; }; + SETPath = derive2 { name="SETPath"; version="1.0"; sha256="1dpgmki0dhph13h1fd3mbf308746wccgfz5g5gdm7bwbjnmjzd98"; depends=[]; broken = true; }; + SEchart = derive2 { name="SEchart"; version="0.1"; sha256="19gqcd6xzwg37nzc67p88ip4i0v2f59ds85xfw9qq8lybvdm76k2"; depends=[JM]; broken = true; }; + SID = derive2 { name="SID"; version="1.0"; sha256="1446zy4rqbw0lpyhnhyd06dzv238dxpdxgmsk34hqv7g3j7q5h1w"; depends=[igraph Matrix pcalg RBGL]; broken = true; }; SII = derive2 { name="SII"; version="1.0.3.1"; sha256="1xvk04b7725ksfd7h4p7px5zanbf6s7xlmjpb7w0nvbi6km2f7ri"; depends=[]; broken = true; }; - SIMMS = derive2 { name="SIMMS"; version="1.3.1"; sha256="0kgaky1hpvvbs2hbzaili9h9pv34c5drfh0d1rc8vf9099xw8575"; depends=[doParallel foreach glmnet MASS randomForestSRC survival]; broken = true; }; - SLBDD = derive2 { name="SLBDD"; version="0.0.3"; sha256="0dvrrvxm1wfr1wpl0r5mkpm8wavkc9hf1mg6gxgb9sshphcn0pg3"; depends=[cluster corpcor fGarch forecast glmnet gsarima imputeTS MASS Matrix matrixcalc MTS rnn TSclust tsoutliers]; broken = true; }; + SK = derive2 { name="SK"; version="1.1"; sha256="19yg7yc2k4zz29bh42lw2jpjvkdj33f26xkfs8vz8lpp98yjf2vx"; depends=[FitAR GD MASS RColorBrewer rgeos rtop sp]; broken = true; }; SMC = derive2 { name="SMC"; version="1.1"; sha256="1r4ajgi785lmpnlxrba0n6phmk1f0mb6b5yqk6hx8gng2w8ggclz"; depends=[]; broken = true; }; - SPECIES = derive2 { name="SPECIES"; version="1.0"; sha256="0p45llf2wjr467bqr4pbljfank9zz3fm42yl3i0r3jbkxgz0rjf0"; depends=[]; broken = true; }; + SNPMClust = derive2 { name="SNPMClust"; version="1.3"; sha256="1gad1jfla4qpczh8vpwyss5cckzgpffsyj0d71r8drbspr4i3r90"; depends=[MASS mclust]; broken = true; }; + SNPmaxsel = derive2 { name="SNPmaxsel"; version="1.0-3"; sha256="0pjvixwqzjd3jwccc8yqq9c76afvbmfq0z1w0cwyj8bblrjpx13z"; depends=[combinat mvtnorm]; broken = true; }; + SOLOMON = derive2 { name="SOLOMON"; version="1.0-1"; sha256="0z91wsrgdir25ks4dnirzsg4f1ngal7n40235m3w43j6y6dhkqrc"; depends=[]; broken = true; }; + SQB = derive2 { name="SQB"; version="0.4"; sha256="12ii8xlwd2r77bj76j7l43898ras25z3plhhv106jaklhpcnk23m"; depends=[caret nnet pls rpart]; broken = true; }; + SQDA = derive2 { name="SQDA"; version="1.0"; sha256="0nfimk625wb64010r5r7hzr64jfwgc6rbn13wvrpn0jgayji87h6"; depends=[limma mvtnorm PDSCE]; broken = true; }; + STARTS = derive2 { name="STARTS"; version="1.2-35"; sha256="0xf5dck1zp1m1bxj8j02yyvg0y79i1y4bi3a6q1k41zixk3hcn2s"; depends=[CDM LAM Rcpp RcppArmadillo sirt]; broken = true; }; + SUE = derive2 { name="SUE"; version="1.0"; sha256="0akv724s84v2zixvwywj1ydfnfvcjnaabv6gm0601nsrh6ij1mi6"; depends=[]; broken = true; }; + SampleSizeMeans = derive2 { name="SampleSizeMeans"; version="1.1"; sha256="1wbc46n8b8wbcxl21blbzs5728dr8r0l8d3jpzbha8pcav0xrh1m"; depends=[]; broken = true; }; SampleSizeProportions = derive2 { name="SampleSizeProportions"; version="1.0"; sha256="0mvkvx3nni0l8ys68sq3h2zlbjvksdcdzxqlf03k0ca5bbcmdf9l"; depends=[]; broken = true; }; + ShinyImage = derive2 { name="ShinyImage"; version="0.1.0"; sha256="0nhsaq6i9lr8gqpdkahw3qr0c0cb0qwc0nqpk1ism21l6zg6ahc9"; depends=[EBImage R6 shiny shinyjs]; broken = true; }; SimpleTable = derive2 { name="SimpleTable"; version="0.1-2"; sha256="1rkybrp7zlb7cj37799npss1ldic0yf519q5l7a6ikal4yl1afyb"; depends=[hdrcde locfit MCMCpack]; broken = true; }; Simpsons = derive2 { name="Simpsons"; version="0.1.0"; sha256="1pm6wga1yxc35zgz72plzq23d3l4bbzfdvhszdxmkn1pkk64h8ms"; depends=[mclust]; broken = true; }; + SocialNetworks = derive2 { name="SocialNetworks"; version="1.1"; sha256="0d868xka6d35i17r28cvm0ya971xk6y1kycsfff0279w27cjd9x0"; depends=[Rcpp]; broken = true; }; SoftRandomForest = derive2 { name="SoftRandomForest"; version="0.1.0"; sha256="1k439hcp53yg6f2x4bgafsri4jjgpva97dphzsdk5icfs5d38bh8"; depends=[boot]; broken = true; }; + SolveRationalMatrixEquation = derive2 { name="SolveRationalMatrixEquation"; version="0.1.0"; sha256="1m0b4sb247k6mlagvs4nj42ga9p48g9736lmhar7v1c5qhi7pw3v"; depends=[]; broken = true; }; + SoundShape = derive2 { name="SoundShape"; version="1.1.9"; sha256="0akkqxiyw79dbhp3a31nrwd5q7a0204vnyddp5l423x5xj8q2x0g"; depends=[abind geomorph plot3D reshape2 seewave tuneR]; broken = true; }; + SpatialBall = derive2 { name="SpatialBall"; version="0.1.0"; sha256="09iy1smfqnb0rd2s9a1wqgscb1plwcwwph6a8215l4zrs6svszv2"; depends=[dplyr ggplot2 hexbin lubridate RColorBrewer]; broken = true; }; SpatialEpiApp = derive2 { name="SpatialEpiApp"; version="0.3"; sha256="0svnnzqshk08s58ishy8xhqch44mb5svgfphkvpgysdd68dgaysr"; depends=[dplyr dygraphs ggplot2 htmlwidgets knitr leaflet mapproj maptools RColorBrewer rgdal rgeos rmarkdown shiny shinyjs SpatialEpi spdep xts]; broken = true; }; SpatialFloor = derive2 { name="SpatialFloor"; version="1.1.0"; sha256="07mwgcvkkq478l6wxvrdjs9d578x0kgs5xy86lgy5my0xqfcv6y8"; depends=[blocksdesign fields reshape2 taRifx]; broken = true; }; + SportsAnalytics = derive2 { name="SportsAnalytics"; version="0.2"; sha256="1vb080ak1mfvr6d0q9i3r8hd547ba80bavjdcri0gclqqcjf1ach"; depends=[]; broken = true; }; + StandardizeText = derive2 { name="StandardizeText"; version="1.0"; sha256="0s267k2b109pcdiyd26gm4ag5afikrnnb55d3cs6g2fvzp744hfp"; depends=[]; broken = true; }; StatCharrms = derive2 { name="StatCharrms"; version="0.90.96"; sha256="1451aj1476qjpmxhpbgd8g55i7rp2msml64xsiy25h7x9g6d9w05"; depends=[cairoDevice car clinfun coxme gWidgets2 gWidgets2RGtk2 lattice multcomp nlme R2HTML RGtk2 RSCABS survival]; broken = true; }; + StatDA = derive2 { name="StatDA"; version="1.7.4"; sha256="1ld7fx1lip54n24r2d9zvd4hri3w02vd174bdi8pi9j5n8xpxl02"; depends=[cluster e1071 geoR MASS MBA mgcv rgl robustbase sgeostat sp xtable]; broken = true; }; SurvGSD = derive2 { name="SurvGSD"; version="1.0.0"; sha256="0aa5zaf9akkqkxs8iqwnm93sfwakhhhs3qfafbk0vrwmb5yvzzm1"; depends=[flexsurv ldbounds mnormt]; broken = true; }; Survgini = derive2 { name="Survgini"; version="1.0"; sha256="1gxkdv2j1njbgnwb52vyhz7p2lrcg3hp6sry3kyhp4wkvf6gnhxi"; depends=[survival]; broken = true; }; SyNet = derive2 { name="SyNet"; version="2.0"; sha256="0mb9dscddkvmkf7l3bbcy4dlfmrvvy588vxdqy5dr783bpa5dkiw"; depends=[tkrplot]; broken = true; }; + TBSSurvival = derive2 { name="TBSSurvival"; version="1.3"; sha256="1r87qvnlvc18i12yi25lfpdb8b5p33fywi38hs2xp1y2vbvz5s9b"; depends=[BMS coda mcmc normalp R_utils Rsolnp survival]; broken = true; }; TCIU = derive2 { name="TCIU"; version="1.2.0"; sha256="0cyagbvcb8x1bszwq8id75838n53l1kcdah7hhm679j2wm4i487s"; depends=[AnalyzeFMRI cubature doParallel dplyr DT extraDistr fancycut fmri foreach forecast geometry ggplot2 ggpubr gridExtra ICSNP MultiwayRegression plotly pracma RColorBrewer reshape2 rrcov scales spatstat_core spatstat_geom tidyr zoo]; broken = true; }; + TERAplusB = derive2 { name="TERAplusB"; version="1.0"; sha256="0mshx615awcf2arm39mgw2gzgpyn7a3f767484g7z4nqqlikwpgc"; depends=[]; broken = true; }; TInPosition = derive2 { name="TInPosition"; version="0.13.6.1"; sha256="1c0h9zg71whmsjn5rnzv5kdrabl9kqrq627caznvrpa74c7pjks9"; depends=[ExPosition InPosition prettyGraphs TExPosition]; broken = true; }; TKCat = derive2 { name="TKCat"; version="0.7.1"; sha256="19iv6srfmvl30mnwxzxwzm5d6fmpgyan490fkszqhq7jjzjhbgg7"; depends=[base64enc DBI dplyr DT future getPass htmltools jsonlite jsonvalidate magrittr markdown promises RClickhouse readr ReDaMoR rlang shiny shinydashboard tidyselect uuid visNetwork xml2]; broken = true; }; TLBC = derive2 { name="TLBC"; version="1.0"; sha256="08w187akbhfbz6nrrf7avf02lrhgj7bbrjmim9gkh4wlbjhzvw67"; depends=[caret HMM randomForest signal stringr]; broken = true; }; + TSTr = derive2 { name="TSTr"; version="1.2"; sha256="0nljkqsrwzg7i82arpfrz2k9m1k1akin1akf01c5cadxq4rgarsf"; depends=[data_table stringdist stringr]; broken = true; }; + TSfame = derive2 { name="TSfame"; version="2015.4-1"; sha256="197v123mkxr7qlksnb5iadms5zbc8xqbpgr2cspb8x1krz6phssz"; depends=[DBI fame tframe tframePlus tis TSdbi]; broken = true; }; TargomoR = derive2 { name="TargomoR"; version="0.2.0"; sha256="0dzlqv8v36cm5b9hc9am4351nigknq7vr0mki9kzk2979c18if6b"; depends=[geojsonsf httr jsonlite leaflet magrittr sf tibble xml2]; broken = true; }; + TauP_R = derive2 { name="TauP.R"; version="1.5"; sha256="02vk9rj8yx4n2pihgk93bs2f9wkpkyfqm2kp7ixj4wpa29a0iq6v"; depends=[]; broken = true; }; + TiddlyWikiR = derive2 { name="TiddlyWikiR"; version="1.0.1"; sha256="0vwwjdmfc8c0y2gfa8gls1mzvp29y39c9sxryrgpk253jj9px1kr"; depends=[]; broken = true; }; TimeWarp = derive2 { name="TimeWarp"; version="1.0.15"; sha256="1v6f6d1h9dc8npdy0ph5hhc4jjkzh8kac48lz4ahgngi9n0xwql9"; depends=[]; broken = true; }; TrafficBDE = derive2 { name="TrafficBDE"; version="0.1.0"; sha256="1lnh9lbjxaradivnd1dkd2szggjh2r4v7klpyxb862dxsmdxxrqw"; depends=[caret data_table dplyr lubridate neuralnet RCurl zoo]; broken = true; }; - UNF = derive2 { name="UNF"; version="2.0.7"; sha256="1i7aj9w90c1bn581l820iasxhs4ibs7xwbhid7gdkz9f87cz568r"; depends=[base64enc digest]; broken = true; }; + TreePar = derive2 { name="TreePar"; version="3.3"; sha256="1sm518b1b4b1p0n5979qzvi2nacxpp3znbg9n75pf2a8z8wy6p4l"; depends=[ape deSolve Matrix subplex TreeSim]; broken = true; }; + UBCRM = derive2 { name="UBCRM"; version="1.0.1"; sha256="1h9f8wlxdgb67qqqnfhd9gfs4l2cq84vajhcb0psva0gwdd1yf6i"; depends=[]; broken = true; }; + UScensus2000cdp = derive2 { name="UScensus2000cdp"; version="0.03"; sha256="143hqnzdla3p31n422ddzaaa34wc6xnnhil4y53m4qydyg407700"; depends=[foreign maptools sp]; broken = true; }; UncertainInterval = derive2 { name="UncertainInterval"; version="0.7.0"; sha256="1lywwjkbmlbxhp2ahmsw2f47i0p848cky7xx1lxrg5ydfzq9kzl5"; depends=[car MASS nloptr psych reshape2 shiny zoo]; broken = true; }; - VARDetect = derive2 { name="VARDetect"; version="0.1.5"; sha256="0cj4cc2kys6hblyh88fc64aaz4ln7961y48qkffrmv3367wr1ypj"; depends=[igraph lattice MTS mvtnorm pracma Rcpp RcppArmadillo sparsevar]; broken = true; }; + VARSEDIG = derive2 { name="VARSEDIG"; version="2.1"; sha256="1cxp80i5160c6kx666nl0gxs8ypfmkzxr2gqph5a9v6ibiq801sj"; depends=[]; broken = true; }; + VBTree = derive2 { name="VBTree"; version="0.1.0"; sha256="0g0lyvclnfmd3zc8yhcibhli0hyxrba6wb3hx039fsg80q7y02h4"; depends=[tensorA]; broken = true; }; + VIF = derive2 { name="VIF"; version="1.0"; sha256="0yvg6ikrcs7mhg0pavhcywrfysv7ylvnhxpc5sam86dbp69flx9x"; depends=[]; broken = true; }; VNM = derive2 { name="VNM"; version="7.1"; sha256="19qglcibb7r6jjz0n0piklwfv3hi4jphd6vmyfbm0ccjjkmn5nin"; depends=[Rcpp]; broken = true; }; + VarBundle = derive2 { name="VarBundle"; version="0.3.0"; sha256="0jfx9gkb3f29lgc0nrz3xc7m2ham0scx9lay7x5a6ira7crga6cr"; depends=[crayon dplyr glue magrittr R6 stringr tibble]; broken = true; }; + VarSwapPrice = derive2 { name="VarSwapPrice"; version="1.0"; sha256="12q2wp2cqi9q47mzbb7sc250zkjqkhs9z0h93ik0h63dv339abgj"; depends=[]; broken = true; }; + WhiteStripe = derive2 { name="WhiteStripe"; version="2.4.0"; sha256="08lywd8jwx6cw7dqm7zxj291gifacymlk8ikjad9aw2f9jm6kap0"; depends=[mgcv neurobase oro_nifti]; broken = true; }; XPolaris = derive2 { name="XPolaris"; version="1.0.2"; sha256="1l05svscgkv9bzkawi2kp9zhchrhxxma3271b828j34pkrnnmq5m"; depends=[curl dplyr ggplot2 httr magrittr purrr raster sf tidyr]; broken = true; }; + Yamm = derive2 { name="Yamm"; version="1.3.1"; sha256="0av5q1vx2f8dvxv0br9w65qmw3zr3y4vja45g8qbqyfb3gkfclhn"; depends=[depth interp OjaNP pcaPP]; broken = true; }; + YieldCurve = derive2 { name="YieldCurve"; version="4.1"; sha256="0w47j8v2lvarrclnixwzaq98nv1xh2m48q5xvnmk7j9nsv2l3p68"; depends=[xts]; broken = true; }; Zelig = derive2 { name="Zelig"; version="5.1.7"; sha256="1x1zcmlhbbzxbb0y91ynz50nfhpki913lnmhcpmlds7drcbbirnk"; depends=[AER Amelia coda dplyr Formula geepack jsonlite MASS MatchIt maxLik MCMCpack quantreg sandwich survey survival VGAM]; broken = true; }; + ZipRadius = derive2 { name="ZipRadius"; version="1.0.1"; sha256="00q4a2bsajs5ns4vdm289iaj9mczxjn3ssyrnmg2z4wicr2ljizv"; depends=[dplyr geosphere ggplot2 magrittr rlang testthat]; broken = true; }; + aCRM = derive2 { name="aCRM"; version="0.1.1"; sha256="0kzp568hd9c9a9qgniia5s5gv0q5f89xfvvwpzb197gqhs3x092v"; depends=[ada dummies kernelFactory randomForest]; broken = true; }; + aGE = derive2 { name="aGE"; version="0.0.9"; sha256="17niwni6sd2mdvhskq6vfwplynh67hwq9ijrlgjvhkcslpb2ilp3"; depends=[MASS nlme survey]; broken = true; }; aRbs = derive2 { name="aRbs"; version="0.1.3"; sha256="19s4x2w036xllrsarapmp8rvyxcsky82k4h9mfr2rbhdfid6h1f3"; depends=[crayon data_table dlstats dplyr DT ggplot2 lubridate progress purrr rvest shiny shinyBS shinycssloaders shinydashboard stringr xml2]; broken = true; }; aba = derive2 { name="aba"; version="0.0.9"; sha256="1qnhnbbd8iir686gc48fld62pd4da39flf2djvvif2bxcvwl8y7a"; depends=[broom dplyr generics ggplot2 glue magrittr purrr rlang stringr tibble tidyr]; broken = true; }; abcdeFBA = derive2 { name="abcdeFBA"; version="0.4"; sha256="1rxjripy8v6bxi25vdfjnbk24zkmf752qbl73cin6nvnqflwxkx4"; depends=[corrplot lattice rgl Rglpk]; broken = true; }; abmR = derive2 { name="abmR"; version="1.0.4"; sha256="1sz27ym4lfzsf8413p3zdq51gcn9lp3bbgjgah0wfas4v3yyfsp4"; depends=[geosphere ggplot2 googledrive gstat gtsummary kableExtra purrr raster rgdal rgeos rnaturalearth rnaturalearthdata sf sp swfscMisc table1 tmap]; broken = true; }; + acmeR = derive2 { name="acmeR"; version="1.1.0"; sha256="000b2hqlhj93958nddw0fqb15ahigs08najv2miivym046x04mf7"; depends=[foreign]; broken = true; }; adaptsmoFMRI = derive2 { name="adaptsmoFMRI"; version="1.1"; sha256="1h79gh1bd6s2xhwf4whh72wf2cz4di2p8dnlf6192mfg108qc6nw"; depends=[coda Matrix MCMCpack mvtnorm spatstat]; broken = true; }; + adhoc = derive2 { name="adhoc"; version="1.1"; sha256="0a59fv9glcqh4zzd0887ndrhlcaylja6vay2ifajp8an29gjk1vv"; depends=[ape pegas polynom]; broken = true; }; adoption = derive2 { name="adoption"; version="0.6.4"; sha256="1xjkvj1ys2xmjgswqfsrry27zyqcc9hk9khl0j4s72gcc8az8sz6"; depends=[quadprog RandomFieldsUtils tkrplot]; broken = true; }; aemo = derive2 { name="aemo"; version="0.3.0"; sha256="108scwyf0dyvn969cks3ikbj2pf2g4dw051asahx26pl0ggw7ijw"; depends=[assertthat dplyr lubridate stringr]; broken = true; }; - agroclim = derive2 { name="agroclim"; version="0.1.0"; sha256="16cyqplzmwziqwkicix0sr06zhc0yx615iv3hda0cxbdyf2rllk3"; depends=[abind cowplot easyNCDF ggforce ggplot2 ggpubr gtable multiApply ncdf4 plyr raster reshape sp zoo]; broken = true; }; + akmeans = derive2 { name="akmeans"; version="1.1"; sha256="1nqbxbx583n0h2zmpy002rlmr6j86j6bg76xj5c69brrh59dpyw1"; depends=[]; broken = true; }; + alignfigR = derive2 { name="alignfigR"; version="0.1.1"; sha256="0jsj0h7zpzj6ynfydl8qbggm03xx8db769rli7rcx9909xdxabk6"; depends=[ggplot2]; broken = true; }; amber = derive2 { name="amber"; version="1.0.3"; sha256="0kc7g5rb0wrs1id1k0qay56063gpffwvcll38983b1l3k215mxiv"; depends=[classInt doParallel foreach Hmisc latex2exp ncdf4 raster rgdal rgeos scico sp viridis xtable]; broken = true; }; + ammistability = derive2 { name="ammistability"; version="0.1.2"; sha256="0ak20y5iv1cg5y06srdlfk5qp5c463ky41l350shnqpq550azy11"; depends=[agricolae ggcorrplot ggplot2 mathjaxr Rdpack reshape2]; broken = true; }; anchors = derive2 { name="anchors"; version="3.0-8"; sha256="12gd2526y7s2a8i6b9xma2c3sc6zxnwzl6sn8b50hbxizwr8d34j"; depends=[MASS rgenoud]; broken = true; }; anominate = derive2 { name="anominate"; version="0.6"; sha256="01p2qkqf88bzhwywyass5r8dwg2ycflmkbzmsps7fzy0kv3xyb02"; depends=[coda MCMCpack pscl wnominate]; broken = true; }; aopdata = derive2 { name="aopdata"; version="0.2.3"; sha256="0zrk76p52lh5h34a9akm7fn4d71mk8ai9clsyiqya0hl2slymcm8"; depends=[curl data_table httr sf]; broken = true; }; @@ -19218,21 +19039,38 @@ in with self; { apsrtable = derive2 { name="apsrtable"; version="0.8-8"; sha256="1qmm89npjgqij0bh6p393wywl837lfsshp2mv9b5izh1sg2qfwvw"; depends=[]; broken = true; }; aptg = derive2 { name="aptg"; version="0.1.1"; sha256="0mdhgc0jrl2za3k2awm92vky2ghcssqq1x2h57ns9b17lwdrsdl4"; depends=[ape brranching phytools taxize xml2]; broken = true; }; arcos = derive2 { name="arcos"; version="1.27"; sha256="02s4vpfsipww6i73lhrdawqlg01gp929n4sx6z869b12jixnq3ni"; depends=[curl dplyr httr jsonlite magrittr stringr tidyr urltools vroom]; broken = true; }; + argosfilter = derive2 { name="argosfilter"; version="0.63"; sha256="0rrc2f28hla0azw90a5gk3zj72vxhm1b6yy8ani7r78yyfhgm9ig"; depends=[]; broken = true; }; artemis = derive2 { name="artemis"; version="1.1.1"; sha256="1v875xn0mvw7p7jdp6d3hpc4cp8yq2aq0b80rq1c619n9rkjq4ks"; depends=[BH ggplot2 lme4 loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; broken = true; }; + asVPC = derive2 { name="asVPC"; version="1.0.2"; sha256="07nfwr0lsfpwgfdgzcdn1svw8dnjfni5ga9q77yjd1bj0wf76ci2"; depends=[ggplot2 plyr]; broken = true; }; aspline = derive2 { name="aspline"; version="0.1.0"; sha256="1xywp471ly6f0n88lwhpwlg54fizdkjxksli9c60vbi8r56n46mr"; depends=[dplyr fda ggplot2 magrittr Matrix mgcv pryr pspline Rcpp reshape2 rlang splines2 tidyr]; broken = true; }; + assist = derive2 { name="assist"; version="3.1.7"; sha256="0avxaa3v4gvb5d7fg761f9l5nr8nyqdq6sq408zpyaki6s6q3acf"; depends=[lattice nlme]; broken = true; }; + audiolyzR = derive2 { name="audiolyzR"; version="0.4-9"; sha256="09jsrjy15vcn6da0kgk06ghayyrf3s853gqv8qdawg745ky2hbgi"; depends=[hexbin plotrix RJSONIO]; broken = true; }; + aurelius = derive2 { name="aurelius"; version="0.8.4"; sha256="00bpf9sggvnajpmg3zsdgfjinkb6wbrcf1ris7qfhh1rp5rz4m4m"; depends=[gbm glmnet jsonlite]; broken = true; }; automultinomial = derive2 { name="automultinomial"; version="2.0.0"; sha256="04rjg3xjlhnkchzvdxqm762z5abm81s5b9czgzmli30zh07bf3fd"; depends=[igraph Matrix numDeriv]; broken = true; }; + bPeaks = derive2 { name="bPeaks"; version="1.2"; sha256="1z6jghcmw0lwv17ms7gdp5zzimaawq3ahbwkxa4062g373592smd"; depends=[]; broken = true; }; badgecreatr = derive2 { name="badgecreatr"; version="0.2.0"; sha256="0mdixklaxky5gs8zm99ky280vxxlbq1mxnaarq6x0d1cb71bzv4l"; depends=[git2r]; broken = true; }; bapred = derive2 { name="bapred"; version="1.0"; sha256="08kvc4cc984jv08ikwbja8zxidrcdiwi5w88hlqakbm8yc6hzssa"; depends=[affy affyPLM Biobase FNN fuzzyRankTests glmnet lme4 MASS mnormt sva]; broken = true; }; basicTrendline = derive2 { name="basicTrendline"; version="2.0.5"; sha256="0402nvm3i32sx3m3c7r74iaj22h570v819yiwkraicjpmg55dghi"; depends=[investr scales]; broken = true; }; batchr = derive2 { name="batchr"; version="0.0.2"; sha256="0fkrv6dlyla7bbl00f16lypnz5idyjz9kdqslgbx3pnfwx5hngwx"; depends=[chk cli furrr hms hmstimer yesno]; broken = true; }; bayesmodels = derive2 { name="bayesmodels"; version="0.1.1"; sha256="1m9428fzirpfzypd2zdcqhjv2cm05s3qmlxj4ymz6i1dg32svqzr"; depends=[BASS bayesforecast brms bsts cli crayon dials dplyr magrittr modeltime parsnip purrr rlang Rlgt rstan rstudioapi tibble timetk workflows]; broken = true; }; + bbefkr = derive2 { name="bbefkr"; version="4.2"; sha256="1wjx652w3p41sq71a2zdzmb7frjxm6xvcgrc2ark2spwb0lbjjw6"; depends=[]; broken = true; }; + bbemkr = derive2 { name="bbemkr"; version="2.0"; sha256="015c57s8mpimm82nddnh382wlkisxgdmc2hvp7k38pcnqxc5gb5q"; depends=[MASS]; broken = true; }; + bbo = derive2 { name="bbo"; version="0.2"; sha256="19xrbla3bb3csg3gjjrpkgyr379zfwyh293bcrcd6j8rnm6g4i01"; depends=[]; broken = true; }; bcc = derive2 { name="bcc"; version="1.3.1"; sha256="0ac0wasdifd0v47r9sxrsix5hv7masiphn6dyxpqdrd11z7iimgz"; depends=[qcc]; broken = true; }; + bdvis = derive2 { name="bdvis"; version="0.2.28"; sha256="1yl2rciag3i2gx3lzycm55497wwbhyy7wmsf928bigi1jz6z2s8q"; depends=[chron ggplot2 lattice leafletR maps plotrix plyr rgdal sqldf taxize treemap]; broken = true; }; + beadarrayFilter = derive2 { name="beadarrayFilter"; version="1.1.0"; sha256="044dq5irc00v2f2gjz0vb69w7q7b84lppc55ganabdv4f0dxdblc"; depends=[beadarray RColorBrewer]; broken = true; }; + benchden = derive2 { name="benchden"; version="1.0.5"; sha256="1cwcgcm660k8rc8cpd9sfpzz66r55b4f4hcjc0hznpml35015zla"; depends=[]; broken = true; }; betaboost = derive2 { name="betaboost"; version="1.0.1"; sha256="1zdyzxl2kp2i5lkiz280wz4av9wqklbn25zmq6n4yb6a579yjfn8"; depends=[gamboostLSS mboost]; broken = true; }; betafam = derive2 { name="betafam"; version="1.0"; sha256="1nf5509alqnr5qpva36f1wb7rdnc084p170h91jv89xvzsidqxca"; depends=[]; broken = true; }; bigmatch = derive2 { name="bigmatch"; version="0.6.2"; sha256="16nmc0n78gzk8x8jhxdilj47gjqqv46sgiivccn5zkv08k1h3jj2"; depends=[liqueueR mvnfast plyr rcbalance]; broken = true; }; + bimetallic = derive2 { name="bimetallic"; version="1.0"; sha256="181qi4dr0zc7x6wziq7jdc1his20jmprfpq3hrfm56fr5n1sj8wl"; depends=[]; broken = true; }; + bimixt = derive2 { name="bimixt"; version="1.0"; sha256="0nhszpzjqy8z3vngl5jdzqxzshnn92wgi0ci5n3n5kzi24xkfrzc"; depends=[pROC]; broken = true; }; + binaryLogic = derive2 { name="binaryLogic"; version="0.3.9"; sha256="19ig9qgjjnivfihjy41pc13qlrb95679mmk4zks5lbbri8qi4qxj"; depends=[]; broken = true; }; binnednp = derive2 { name="binnednp"; version="0.4.0"; sha256="1qswrr982x5hy2vl2fc603j98cjli9l40zzvvjy2l91p8xxrc5dn"; depends=[doParallel fitdistrplus foreach kedd mclust nor1mix Rcpp Rdpack]; broken = true; }; binomialMix = derive2 { name="binomialMix"; version="1.0.1"; sha256="1ak3h0lgjmrv9miwn7fl6jvcp8xdld53swjz71q67q999s42np0m"; depends=[dplyr gmp lubridate MASS rlang Rmpfr stringr]; broken = true; }; + bioset = derive2 { name="bioset"; version="0.2.3"; sha256="15vchim8cim42j1if0jars696rh50vmbggr9748q321f6ngm1w1i"; depends=[dplyr magrittr rlang tibble tidyr]; broken = true; }; bivquant = derive2 { name="bivquant"; version="0.1"; sha256="05dn4qik2dvmgqc2613vddh312bqhza1vnf94an75888gxri5h03"; depends=[copula cubature lpSolve MASS mvtnorm regpro]; broken = true; }; + blin = derive2 { name="blin"; version="0.0.1"; sha256="1h94azm7gli9i4v3li5c1p36p3rkcj2p5j6rqzlzf0pcqs0bsc09"; depends=[abind glmnet MASS Matrix mvtnorm]; broken = true; }; blockRAR = derive2 { name="blockRAR"; version="1.0.2"; sha256="1d9izlcgz85kcz1sh11mcxq96qh0cwv6638jha851h2f4lnc8aa4"; depends=[arm dplyr ldbounds magrittr tibble]; broken = true; }; blockTools = derive2 { name="blockTools"; version="0.6-3"; sha256="0023p0msfmp8swq4f5aff40m976np7y051x8hjizzw91hrfa4w2n"; depends=[MASS tibble]; broken = true; }; bmd = derive2 { name="bmd"; version="0.5"; sha256="0d4wxyymycb416sdn272292l70s1h2m5kv568vakx3rbvb8y6agy"; depends=[drc]; broken = true; }; @@ -19240,331 +19078,675 @@ in with self; { bnpmr = derive2 { name="bnpmr"; version="1.2"; sha256="0vpqhs1h2mphn9w5yngb7lxvmzrhn7mkj7ca6hykhhg48s2ra98g"; depends=[]; broken = true; }; boostr = derive2 { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; broken = true; }; bootsPLS = derive2 { name="bootsPLS"; version="1.1.2"; sha256="19ikz3l0qds25hgcxvhsvqy6jyshcdvnxw6774ifl9ylngxvlfh0"; depends=[mixOmics]; broken = true; }; + bootspecdens = derive2 { name="bootspecdens"; version="3.0"; sha256="0hnxhfsc3ac4153lrjlxan8xi4sg1glwb5947ps6pkkyhixm0kc1"; depends=[MASS]; broken = true; }; + boussinesq = derive2 { name="boussinesq"; version="1.0.3"; sha256="1j1jarc3j5rby1wvj1raj779c1ka5w68z7v3q8xhzjcaccrjhzxk"; depends=[]; broken = true; }; boxcoxmix = derive2 { name="boxcoxmix"; version="0.28"; sha256="12f1lakfy9i1rq70cq0bffpdachsm58rcmbbhgnq1r31g028zrcc"; depends=[npmlreg qicharts statmod]; broken = true; }; brunnermunzel = derive2 { name="brunnermunzel"; version="1.4.1"; sha256="1lba5cpiray65zg1pv3xv6yl1xg78rqlwxkcmhgizlh1rhpd430p"; depends=[]; broken = true; }; + bvenn = derive2 { name="bvenn"; version="0.1"; sha256="1xrya49w5bd2b7plfxpqla60b2828rkm0rjmc4qnqzvrahsbal0y"; depends=[]; broken = true; }; cairoDevice = derive2 { name="cairoDevice"; version="2.28.2.1"; sha256="040gd6cyaabdi0lhfdba4isqjihj28hdxm7mc129nl863pxkx6qm"; depends=[]; broken = true; }; caliver = derive2 { name="caliver"; version="2.0.0"; sha256="04qa3zrk70c8ak70djfh23jyfxs8293s8wzkk6cs0nyrknhaxzzj"; depends=[ggplot2 lubridate ncdf4 raster rworldmap]; broken = true; }; + cartools = derive2 { name="cartools"; version="0.1.0"; sha256="0gc5502373f0c2m2rh6awvyfqrg1wx1f341dm2byk9znba887lgs"; depends=[animation devtools dplyr gapminder ggplot2 knitr rlist rmarkdown roxygen2 sde shiny tidyverse usethis]; broken = true; }; caschrono = derive2 { name="caschrono"; version="2.2"; sha256="0lbf7j6p5gzm4kk8sgzcmxwwzg59wp6g6l38m04609lpcsvxkd52"; depends=[Hmisc zoo]; broken = true; }; catchr = derive2 { name="catchr"; version="0.2.31"; sha256="0mj3cgv2d217hcmyr8x0i83wysxhixgly5y1fs6jb1x09gs1cwnd"; depends=[purrr rlang]; broken = true; }; + catspec = derive2 { name="catspec"; version="0.97"; sha256="1crry0vg2ijahkq9msbkqknljx6vnx2m88bmy34p9vb170g9dbs1"; depends=[]; broken = true; }; causalCmprsk = derive2 { name="causalCmprsk"; version="1.0.3"; sha256="0s1jshh30jmkk2cx29dfhibmfzbpaqk7i0f8wayb204r73a58f8a"; depends=[data_table doParallel foreach inline purrr survival]; broken = true; }; cbar = derive2 { name="cbar"; version="0.1.3"; sha256="1jy52qnpjvszdd8xviv3vr00ds6bah73q0mhd4kixf68jafnxd35"; depends=[Boom bsts dplyr ggplot2 magrittr]; broken = true; }; + cbird = derive2 { name="cbird"; version="1.0"; sha256="0kzylylk46swd7f0j6kjyrcs3plbx9799q9kb8hjxmgh0qcjk2p6"; depends=[]; broken = true; }; + cblasr = derive2 { name="cblasr"; version="1.0.0"; sha256="1bz8d4124qpja4bvzn6k1swi89cfyrcpwg2nwyj4r8y0m1hbpc71"; depends=[Rcpp]; broken = true; }; + ccChooser = derive2 { name="ccChooser"; version="0.2.6"; sha256="1vgp4zhg46hcf9ma2cmwgnfrqkmq1arh0ahyzjpfk3817vh7disc"; depends=[cluster]; broken = true; }; + cdcatR = derive2 { name="cdcatR"; version="1.0.5"; sha256="1gh39xh4060nni9p0gb5c20xkx5la47l3qi4bw036n1nc61s6nk4"; depends=[cdmTools cowplot doSNOW foreach GDINA ggplot2 NPCD]; broken = true; }; + cdfquantreg = derive2 { name="cdfquantreg"; version="1.3.1"; sha256="0iwnjkm2d7j9wc6lszfd0n2dzbgbfp05vh474fw7h22gdnna5aw7"; depends=[Formula MASS pracma]; broken = true; }; + cdmTools = derive2 { name="cdmTools"; version="1.0.1"; sha256="0889vc7glb4jfkwaf5jr3kqkyx6qrpjaplgpfdis2bd7xv46y47i"; depends=[combinat GDINA ggplot2 GPArotation NPCD psych sirt]; broken = true; }; cecs = derive2 { name="cecs"; version="0.2.4"; sha256="1fm1yrb8kd7f97kgsp5wfp02fspzvndki2aqsfcwb0rlrlckflzf"; depends=[cec2013 stringr]; broken = true; }; + cenROC = derive2 { name="cenROC"; version="1.2.0"; sha256="07ja3yyqmb9cs76if32aksgcwki3y6nh13lvn9j0bdgbgqx65f3r"; depends=[condSURV icenReg Rcpp RcppEigen survival]; broken = true; }; + cgdsr = derive2 { name="cgdsr"; version="1.3.0"; sha256="07yc819hkabpzzh0g0cbqza6bcfy67b2marrzz1lj97f9iba78ja"; depends=[httr R_methodsS3 R_oo]; broken = true; }; cheatR = derive2 { name="cheatR"; version="1.2.1"; sha256="0ph7bw2b3frmq6z7qb99pds8j81dbx0bxkbhb55mczqa7n0k50hy"; depends=[ngram purrr R_utils textreadr]; broken = true; }; + cheb = derive2 { name="cheb"; version="0.3"; sha256="0vqkdx7i40w493vr7xywjypr398rjzdk5g410m1yi95cy1nk4mc7"; depends=[]; broken = true; }; + chebpol = derive2 { name="chebpol"; version="2.1-2"; sha256="126cgqnl9jy332q0ywg9dr11d4q1aichwwakb1xcrxrqw2j26zzi"; depends=[geometry]; broken = true; }; chi2x3way = derive2 { name="chi2x3way"; version="1.1"; sha256="13qc8sigiw4gcxk8y50q7yfgzbssjyl41fizzjqzcp3p14kpsmzw"; depends=[]; broken = true; }; + childhoodmortality = derive2 { name="childhoodmortality"; version="0.3.0"; sha256="1ixd10jyzgr1ssnjas35kngpsqyjzl73wwpvcspv06cn12sv2b8d"; depends=[dplyr matrixStats plyr]; broken = true; }; cin = derive2 { name="cin"; version="0.1"; sha256="1pwvy5nh5nrnysfqrzllb9fcrpddqg02c7iw3w9fij2h8s2v6kq5"; depends=[]; broken = true; }; + cinaR = derive2 { name="cinaR"; version="0.2.1"; sha256="0i0fkh5j494fy9zy0p67ashqsa7vw3jhf092sw3nfyvmb7k4spnj"; depends=[ChIPseeker DESeq2 dplyr edgeR fgsea GenomicRanges ggplot2 ggrepel limma pheatmap preprocessCore RColorBrewer sva TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene writexl]; broken = true; }; circglmbayes = derive2 { name="circglmbayes"; version="1.3.0"; sha256="0i5aacr7vqznm3rhlznc02xjzjkjliadxhhvsmf8wb2cvivz0wir"; depends=[BH coda ggplot2 Rcpp RcppArmadillo reshape2 shiny]; broken = true; }; + citbcmst = derive2 { name="citbcmst"; version="1.0.4"; sha256="1zkd117h9nahwbg5z6byw2grg5n3l0kyvv2ifrkww7ar30a2yikl"; depends=[]; broken = true; }; + citccmst = derive2 { name="citccmst"; version="1.0.2"; sha256="1b7awn1hjckxisfdi4ck697hwd4a5sqklwi7xzh6kgqhk9pv7vjn"; depends=[]; broken = true; }; + ciuupi = derive2 { name="ciuupi"; version="1.1.0"; sha256="0czfmmf62p1vml24s87pdwv52spqycchpkqzwk8vyd4n1z27r5s2"; depends=[functional nloptr pracma statmod]; broken = true; }; + cleanerR = derive2 { name="cleanerR"; version="0.1.1"; sha256="0rghn8rx7dj5clmc1dqvqwfm9kiva04k9gxsjjga3109l4jcpg63"; depends=[data_table plyr]; broken = true; }; clpAPI = derive2 { name="clpAPI"; version="1.3.1"; sha256="0hjpdbmwaww5fznqkkg9jli5y8f8zyd7crn0imdb0xxypmnp7zgf"; depends=[]; broken = true; }; + clusterGenomics = derive2 { name="clusterGenomics"; version="1.0"; sha256="127hvpg06is4x486g1d5x7dfkrbk7dj35qkds0pggnqxkq3wsc1c"; depends=[]; broken = true; }; + coexist = derive2 { name="coexist"; version="1.0"; sha256="15ydhrx996i6caa0360c2bgn2zvgwfg5wdhsqq1gvrggs15w7nml"; depends=[]; broken = true; }; + collectArgs = derive2 { name="collectArgs"; version="0.4.0"; sha256="0fz5w1xsxiddzrwahrg50px4igyhd4plq655jaix6grancs7kvix"; depends=[magrittr]; broken = true; }; + colr = derive2 { name="colr"; version="0.1.900"; sha256="0ilz1y0jd2vgyh81g3dwx2l64sir6z6sgmqx7lnvr1hafsqnwfc8"; depends=[]; broken = true; }; + compareODM = derive2 { name="compareODM"; version="1.2"; sha256="019hq8j56asjvh4x1p65785mf38xr05j3by0749gl9k9yl8645da"; depends=[XML]; broken = true; }; compstatr = derive2 { name="compstatr"; version="0.2.1"; sha256="0pg8yacfb7jvg9xr0gmis8a4g339isd77h6wr8dd6w900q47xac0"; depends=[dplyr fs httr janitor lubridate purrr readr rlang rvest sf stringr tibble tidyr xml2]; broken = true; }; connections = derive2 { name="connections"; version="0.1.1"; sha256="08fbyzyp26nh1a46p0zi3q0wzgl0cd9bjp4lhw2bwv1bv7yayamp"; depends=[DBI dbplyr dplyr pins rscontract uuid]; broken = true; }; + constrainedKriging = derive2 { name="constrainedKriging"; version="0.2.4"; sha256="1a91s0b7yka37fb5pm172fmlqrhm6da370cqb9knvkg5n8vi4hys"; depends=[RandomFields rgeos sp spatialCovariance]; broken = true; }; contextual = derive2 { name="contextual"; version="0.9.8.4"; sha256="0lww36nymg2cla83jdvl7a42cwn0il20apciz0ddplq8rw2i0a91"; depends=[data_table doParallel foreach Formula iterators itertools R_devices R6 rjson]; broken = true; }; + conting = derive2 { name="conting"; version="1.7"; sha256="08f271j3gxcp4shda08kkv0v9ayaadvxgcglfsn6hjmw4hn298zg"; depends=[BMS coda gtools mvtnorm tseries]; broken = true; }; + coreTDT = derive2 { name="coreTDT"; version="1.0"; sha256="14rnh61gk3m6g8rq77hm9ybds0px15di2mxm3jiyfdfynx5ng58f"; depends=[]; broken = true; }; coreheat = derive2 { name="coreheat"; version="0.2.2"; sha256="1mahnd6k7whd7nj9ax1fhpm17j35i6prww06qx691l8dfn954ld9"; depends=[Biobase convertid heatmapFlex WGCNA]; broken = true; }; + countyfloods = derive2 { name="countyfloods"; version="0.1.0"; sha256="0ld8p8dfk9khvwffbn8sad0j3an25s7cvbi6jxljgx4zc6ldh699"; depends=[dataRetrieval dplyr ggplot2 lubridate maps plyr R_utils tidyr]; broken = true; }; countytimezones = derive2 { name="countytimezones"; version="1.0.0"; sha256="0sk22fmz9d3wvlfvjl1xdavvl04q1ywy8ww2gi5am3yiizkf0v9w"; depends=[dplyr lubridate]; broken = true; }; + cpd = derive2 { name="cpd"; version="0.1.0"; sha256="1qcyb7n69ppa0py7w31msim7gf2wdh94hmsilsdk8ivxljc1gv8n"; depends=[fAsianOptions Rdpack]; broken = true; }; cplexAPI = derive2 { name="cplexAPI"; version="1.4.0"; sha256="00h2zir1ffzjiglfyq8bsfmgq9z155jr0k0fxv8fsbfyw2x9dg10"; depends=[]; broken = true; }; crantastic = derive2 { name="crantastic"; version="0.1"; sha256="0y2w9g100llnyw2qwjrib17k2r2q9yws77mf6999c93r8ygzn4f5"; depends=[]; broken = true; }; + crn = derive2 { name="crn"; version="1.1"; sha256="1fw0cwx478bs6hxidisykz444jj5g136zld1i8cv859lf44fvx2d"; depends=[chron RCurl]; broken = true; }; + crrp = derive2 { name="crrp"; version="1.0"; sha256="1fq54jr6avrli91a4z1hp5img4kghyw1yvjr5xyccsanf9i35x8r"; depends=[cmprsk Matrix survival]; broken = true; }; csSAM = derive2 { name="csSAM"; version="1.2.4"; sha256="1ms8w4v5m9cxs9amqyljc2hr1178cz6pbhmv7iiq9yj1ijnl4r1x"; depends=[]; broken = true; }; + cuRe = derive2 { name="cuRe"; version="1.0.1"; sha256="0vw2iv9inz8md7lz6f1p456wxjc07kap1mvqf58hixqxbrb23dgi"; depends=[date numDeriv relsurv rstpm2 statmod survival]; broken = true; }; cuml = derive2 { name="cuml"; version="0.2.1"; sha256="1dmk1gvvzkwfra63qslax9cgqjbsiqam5wcjl955wpb0wdqpa54k"; depends=[ellipsis hardhat magrittr parsnip Rcpp rlang]; broken = true; }; + cusp = derive2 { name="cusp"; version="2.3.3"; sha256="130m0is48bp11p5fpg17lwqwlavsa8fzfxjs0z62vl6lm006aahw"; depends=[]; broken = true; }; + customsteps = derive2 { name="customsteps"; version="0.7.1.0"; sha256="1v6ks8j1mj623yai515xnrpx60hvilbrsn59r3zw30n68555cvw8"; depends=[dplyr generics magrittr purrr recipes rlang tibble tidyselect]; broken = true; }; + cwhmisc = derive2 { name="cwhmisc"; version="6.6"; sha256="1pf365g4f51cfrhlff9mqw2ddvkps0abax17zcn3vw1ba2djalnp"; depends=[lattice]; broken = true; }; + cytoDiv = derive2 { name="cytoDiv"; version="0.5-3"; sha256="00c0gqgypywgbhavb15bvj6ijrk4b5zk86w85n9kwr4069b7jvwc"; depends=[GenKern plotrix]; broken = true; }; darts = derive2 { name="darts"; version="1.0"; sha256="07i5349s335jaags352mdx8chf47ay41q7b0mh2xjwn2h9kzgqib"; depends=[]; broken = true; }; data360r = derive2 { name="data360r"; version="1.0.8"; sha256="0g3prfaqy7d5fdla4l31cj87vhzi945g22zr7pi2c2whlk4q4n09"; depends=[curl data_table jsonlite reshape2]; broken = true; }; + datadigest = derive2 { name="datadigest"; version="1.0.2"; sha256="1v4nwflrgjhwkrdlrjnqyq1spv1jkgxn1kmapml0zrvnvwf0r1a1"; depends=[haven Hmisc htmltools htmlwidgets jsonlite miniUI shiny tibble]; broken = true; }; datamap = derive2 { name="datamap"; version="0.1-1"; sha256="0qm4zb9ldg4wz1a7paj5ilr1dhyagq81rk9l2v43hmkv52sssgkv"; depends=[DBI]; broken = true; }; datapackage_r = derive2 { name="datapackage.r"; version="1.3.5"; sha256="01xx8alj3niznkrn3y2w9j1g60zn1fq0a2clf4r5p2pjyr2rqgy3"; depends=[config future httr iterators jsonlite jsonvalidate purrr R_utils R6 readr rlist stringr tableschema_r urltools V8]; broken = true; }; - datazoom_amazonia = derive2 { name="datazoom.amazonia"; version="0.2.0"; sha256="0l24blbscai47rj9s8a0znd5q4mayddp639107r8dib466ykrz3g"; depends=[data_table dplyr geobr googledrive Hmisc janitor labelled lubridate magrittr purrr RCurl readr readxl sf sidrar stringi stringr tibble tidyr XML]; broken = true; }; + datelife = derive2 { name="datelife"; version="0.6.1"; sha256="0fv478ykka6m5j3d6k7265xp76qc78fr7ms9khx349qbylj67306"; depends=[abind ape BiocManager bold cluster compare geiger httr ips knitcitations paleotree phangorn phylobase phylocomr phytools plyr rotl stringr taxize treebase]; broken = true; }; + dbEmpLikeGOF = derive2 { name="dbEmpLikeGOF"; version="1.2.4"; sha256="0vhpcxy702cp3lvlif2fzmvccys8iy7bv1fbg6ki2l8bvn2f7c5p"; depends=[]; broken = true; }; + dbEmpLikeNorm = derive2 { name="dbEmpLikeNorm"; version="1.0.0"; sha256="0h5r2mqgallxf9hin64771qqn9ilgk1kpsjsdj2dqfl3m8zg967l"; depends=[dbEmpLikeGOF]; broken = true; }; + dbstats = derive2 { name="dbstats"; version="1.0.5"; sha256="0pr80mx8y87l96hhg0rp3ajxl7yx2f8qr0y1zrjkbzxavjmp9k34"; depends=[cluster pls]; broken = true; }; + dcminfo = derive2 { name="dcminfo"; version="0.1.7"; sha256="03r0ynzc5cck2rz20zbg5zx8v6s66ivizqav1pjkyvp6kxkmnf8q"; depends=[CDM]; broken = true; }; dcortools = derive2 { name="dcortools"; version="0.1.2"; sha256="0p4qbah5jnb6jraka8bg6cks3namrz66bya2iz98q2adarqd517h"; depends=[ggplot2 Hmisc pheatmap Rcpp RcppArmadillo RcppEigen Rdpack Rfast]; broken = true; }; dcv = derive2 { name="dcv"; version="0.1.1"; sha256="12c716x8dnxnqksibpmyysqp2axggvy9dpd55s9bhnsvqvi6dshj"; depends=[lmtest]; broken = true; }; deGradInfer = derive2 { name="deGradInfer"; version="1.0.1"; sha256="0yczn63fhpirvz1g1kq9q0m04sisflxxgxy70c87jyvrw12nfwss"; depends=[deSolve gdata gptk]; broken = true; }; define = derive2 { name="define"; version="0.2.9"; sha256="0sq7ryiz1py0yw7g2bncd834zsdiy1y7rck8k4grrx2ips5gv2jy"; depends=[encode Hmisc latexpdf SASxport spec]; broken = true; }; delt = derive2 { name="delt"; version="0.8.2"; sha256="06g03wy9r2qvly0lnv5fv4k366mhlk56qkvak0xaxy99p1i34kmv"; depends=[denpro]; broken = true; }; deltar = derive2 { name="deltar"; version="1.0.0"; sha256="1ki89ysz4qlq5z094ybg3aqfcb6g633ccvpj1cg6nri9z5qjwpm1"; depends=[Bchron]; broken = true; }; + dendrometeR = derive2 { name="dendrometeR"; version="1.0.0"; sha256="1par27ipgbfbrmdlwvkf82i5dgnfrcawmavakrf8lplin2hhb7gs"; depends=[forecast pspline zoo]; broken = true; }; denpro = derive2 { name="denpro"; version="0.9.2"; sha256="19hrpfd44jaavq81dbyj3frris4aflfc8lig0471whv0pc6jci2k"; depends=[]; broken = true; }; + deseasonalize = derive2 { name="deseasonalize"; version="1.35"; sha256="1fjsa7g34dckjs6mx9b10m99byxagggm0p9pw2f1vmpjqlasin0l"; depends=[FitAR lattice]; broken = true; }; + dfexplore = derive2 { name="dfexplore"; version="0.2.1"; sha256="04nbhn59l1kas26nwj4qflkjvvr33sj1mm7zg7fhvya85gvlhrbf"; depends=[ggplot2]; broken = true; }; + dialectR = derive2 { name="dialectR"; version="1.0"; sha256="11fd2fdxczlcxkk3pwhiw0vb51bndh9qcfp7pqcfj1z7aga52xk0"; depends=[deldir dplyr dtw ggplot2 ggvoronoi Rcpp RcppProgress reticulate sf tibble]; broken = true; }; + dielectric = derive2 { name="dielectric"; version="0.2.3"; sha256="1p1c0w7a67zxp1cb99yinylk5r1v89mmpfybcy94ydydhydbhivk"; depends=[]; broken = true; }; diffman = derive2 { name="diffman"; version="0.1.1"; sha256="08b4kqxfg8pmyl2xg8flb581s9wnkdcy5rrmrxp8a89y265qmirx"; depends=[data_table dplyr igraph Matrix progress Rcpp sf tidyverse]; broken = true; }; + discnorm = derive2 { name="discnorm"; version="0.2.0"; sha256="08pgn5lr7qr2i2iyyrpivibd4mr9p5dgg0agbdqgzk5zjchhpk4a"; depends=[arules copula cubature GoFKernel lavaan MASS mnormt pbivnorm sirt]; broken = true; }; diseasemapping = derive2 { name="diseasemapping"; version="1.5.1"; sha256="0pqilkl56753j1fxy6mh7nx24n6qg2j5faxyxj6abcm6xrnkhmy9"; depends=[rgeos sp]; broken = true; }; + displayHTS = derive2 { name="displayHTS"; version="1.0"; sha256="0mqfdyvn2c5c3204ykyq29ydldsq0kb3a1d7mrzqr7cvrj1ahlqa"; depends=[]; broken = true; }; dmacs = derive2 { name="dmacs"; version="0.1.0"; sha256="1prw6h8sj6fcpajg6xwqhi8v5jfl74mbjdjrdy524miw56fh9h0r"; depends=[lavaan MplusAutomation]; broken = true; }; + dna = derive2 { name="dna"; version="2.1-2"; sha256="0l7i9640yd25cbxd3vbmlsqgk3pi2f7v6g5q0lrgycxl7jla9v1k"; depends=[]; broken = true; }; + documair = derive2 { name="documair"; version="0.6-0"; sha256="1pphcbx90n9xn8a7gvfrwzfapwqgpbl3gg2grm7chfxgcp7i99i2"; depends=[]; broken = true; }; + dominanceanalysis = derive2 { name="dominanceanalysis"; version="2.0.0"; sha256="0qxldvlgbysy9j17kb0a9p132a04a4j12h4m0r70zv2752fj24c0"; depends=[]; broken = true; }; + dotdot = derive2 { name="dotdot"; version="0.1.0"; sha256="0d8inv2m7pkk6dnv9j9zai4lhghcg656l46d00rhp604rbhzlmw9"; depends=[]; broken = true; }; dpa = derive2 { name="dpa"; version="1.0-3"; sha256="0dmwi68riddi1q4b10c12wx6n7pqfmv30ix5x72zpdbgm72v343h"; depends=[igraph sem]; broken = true; }; - drtmle = derive2 { name="drtmle"; version="1.1.0"; sha256="08a6k0nrg6mqdslwjc71583x52vnax87nbfalk98zczwvrrdwvxa"; depends=[future_apply np SuperLearner]; broken = true; }; + dpcid = derive2 { name="dpcid"; version="1.0"; sha256="1gx8gyrxvm07mjiasl0b80y0x3crq6gy170v6s817d11jw44n86z"; depends=[]; broken = true; }; dsims = derive2 { name="dsims"; version="0.2.2"; sha256="1fmffmiz8k9gqybv2wmq33ds5fgl2lc7nrhi02i0nxwhjqw42da5"; depends=[Distance dssd ggplot2 gridExtra mgcv mrds rgeos rlang rstudioapi sf sp]; broken = true; }; + dummies = derive2 { name="dummies"; version="1.5.6"; sha256="01f84crqx17xd6xy55qxlvsj3knm8lhw7jl26p2rh2w3y0nvqlbm"; depends=[]; broken = true; }; + dupiR = derive2 { name="dupiR"; version="1.2"; sha256="0p649yw7iz6hnp7rqa2gk3dqkjbqx1f6fzpf1xh9088nbf3bhhz3"; depends=[plotrix]; broken = true; }; + durmod = derive2 { name="durmod"; version="1.1-4"; sha256="0d721sbxjfh00gpxd4hj8iq04awfd0pcd6bw8cv7kny21l2f3w44"; depends=[data_table mvtnorm nloptr numDeriv Rcpp]; broken = true; }; dynamicGraph = derive2 { name="dynamicGraph"; version="0.2.2.6"; sha256="1xnsp8mr3is4yyn0pyrvqhl893gdx2y1zv8d2d55aah2xbfk0fjj"; depends=[ggm]; broken = true; }; dynatopmodel = derive2 { name="dynatopmodel"; version="1.2.1"; sha256="0lpfhj69bvagqzzg2kjqvn9xx8f93ii34flrrns20z3bxla6gds9"; depends=[deSolve lubridate maptools raster rgdal rgeos sp topmodel xts zoo]; broken = true; }; - eBsc = derive2 { name="eBsc"; version="4.13"; sha256="0n4v07462kxcsyjdy0cjbkn48ryzfnrvj28gxpsxwzn2sddfpl86"; depends=[Brobdingnag MASS Matrix nlme Rcpp RcppArmadillo]; broken = true; }; ecap = derive2 { name="ecap"; version="0.1.2"; sha256="0d260y4phh1a7zlj2lgvdf7xd2z14l9djv7nrwa84pwqqyijc7rl"; depends=[ggplot2 quadprog]; broken = true; }; + econetwork = derive2 { name="econetwork"; version="0.6.0"; sha256="0h34c9gfdixckb3lcc699bb0cs49dsi7pg3524hrycbhdnfn51yf"; depends=[bipartite blockmodels igraph Matrix_utils Rcpp RcppEigen RcppGSL rdiversity]; broken = true; }; edbuildr = derive2 { name="edbuildr"; version="0.3.0"; sha256="19fsk8qkxyzncn614fy6hmmxpv1dikqghs101hbzd0g0a511xk8f"; depends=[dplyr magrittr openxlsx scales stringr tidyselect]; broken = true; }; + edcc = derive2 { name="edcc"; version="1.0-0"; sha256="036fi6mnn9480hkb378xb5jilkfvdydjmkyw4mcc9s1lz195f62w"; depends=[spc]; broken = true; }; + edci = derive2 { name="edci"; version="1.1-3"; sha256="1f1ry2adfranfrrvf1gkiy58pra3z6bray4v5fgr0z9n1ybcaff0"; depends=[]; broken = true; }; + eddi = derive2 { name="eddi"; version="0.0.1"; sha256="19cgrqdcji509igb6rmlwb75xyyvrh34nv6zyjjfcsc31p5nvf95"; depends=[raster rgdal]; broken = true; }; edeR = derive2 { name="edeR"; version="1.0.0"; sha256="1dg0aqm5c4zyf015hz1hhn3m4lfvybc4gc1s7sp8jcsk46rxz0cc"; depends=[rJava rjson rJython]; broken = true; }; + edrGraphicalTools = derive2 { name="edrGraphicalTools"; version="2.2"; sha256="105jv2sz10xbl881lkhgmxzgmb8629mqsminhd197khrkf9nv40i"; depends=[lasso2 MASS mvtnorm rgl]; broken = true; }; efts = derive2 { name="efts"; version="0.9-0"; sha256="1cdn37sij3q73z9gal6x3nnnds55whfj5ywyww119hx092xcb2h4"; depends=[lubridate magrittr ncdf4 plyr stringr udunits2 xts]; broken = true; }; egcm = derive2 { name="egcm"; version="1.0.12"; sha256="0nssf5six1j7z6fss7478zdbsfx60myzw833m7nsnaf1r8n4ixaf"; depends=[ggplot2 MASS pracma quantmod tseries urca xts zoo]; broken = true; }; eixport = derive2 { name="eixport"; version="0.5.0"; sha256="1k5p9v5jmw5cs31sn69fjdfhh5yyzk85828aljsmsyx1ycibnwmg"; depends=[cptcity data_table ncdf4 raster sf sp]; broken = true; }; emma = derive2 { name="emma"; version="0.1-0"; sha256="0psd8lrbcqla8mkhp0wlassaaimgwlmqy5yv2wwcq59mc5k1v27f"; depends=[clusterSim earth]; broken = true; }; + emme2 = derive2 { name="emme2"; version="0.9"; sha256="035s4h95ychqb14wib0dqbg4sjy9q01fsryr0ri25g1hsi5f8lpm"; depends=[reshape]; broken = true; }; endogMNP = derive2 { name="endogMNP"; version="0.2-1"; sha256="0maxcp321ngbxrg0i23nlwhj849v771xahh53367x928ss4f8v7i"; depends=[]; broken = true; }; - enveomics_R = derive2 { name="enveomics.R"; version="1.8.0"; sha256="00akdhqs7jabk7g33rwmxs92jcr39shy9s456nqxk6x4244d2vb3"; depends=[fitdistrplus investr sn]; broken = true; }; + enviPick = derive2 { name="enviPick"; version="1.5"; sha256="04q6zwqq2ip8b8h2n1jpgx1bzcvi7lazljs0806wiakbc79x232p"; depends=[readMzXmlData shiny]; broken = true; }; + epade = derive2 { name="epade"; version="0.3.8"; sha256="1alvsifc6i71ilm1xxs1d7sqlapb48bqd6z2n4wi6pqcjvwp7bif"; depends=[plotrix]; broken = true; }; epiGWAS = derive2 { name="epiGWAS"; version="1.0.2"; sha256="0jqblfmz02za3b2pgi15379bzgh98yv5kyv8kh0lkzhrmpgph2zj"; depends=[DescTools glmnet matrixStats SNPknock]; broken = true; }; epiphy = derive2 { name="epiphy"; version="0.3.4"; sha256="04wsppjycnrzrml3zxrpr0xdxxas3hj8rskiivx5vfmfjpwipq4r"; depends=[ggplot2 msm pbapply Rcpp transport]; broken = true; }; eqtl = derive2 { name="eqtl"; version="1.1-7"; sha256="0xfr8344irhzyxs9flnqn4avk3iv1scqhzac5c2ppmzqhb398azr"; depends=[qtl]; broken = true; }; + errorizer = derive2 { name="errorizer"; version="0.2.1"; sha256="10p7ydm81x2gls0wn692llgj2rxhg4s96rv7gvihmgi5dflraypq"; depends=[]; broken = true; }; evaluator = derive2 { name="evaluator"; version="0.4.3"; sha256="1gccymjb1ad3xw3kmqafchazv9rid6v6c3h8w96ai5b2jh8zlgwk"; depends=[cli crayon dplyr extrafont ggplot2 magrittr mc2d purrr readr readxl rlang rstudioapi scales stringi tibble tidyr vctrs viridis]; broken = true; }; + evdbayes = derive2 { name="evdbayes"; version="1.1-1"; sha256="0lfjfkvswnw3mqcjsamxnl8hpvz08rba05xcg0r47h5vkgpw5lgd"; depends=[]; broken = true; }; eventstudies = derive2 { name="eventstudies"; version="1.2.2"; sha256="01vpd0gnxaibxn3nq6618rxlwapm86idz86n0wj5kfz4a9kj7lsx"; depends=[boot sandwich testthat xts zoo]; broken = true; }; + evt0 = derive2 { name="evt0"; version="1.1-3"; sha256="08sbyvx49kp3jsyki60gbbnci26d6yk0yj2zcl4bhfac8c3mm6ya"; depends=[evd]; broken = true; }; expands = derive2 { name="expands"; version="2.1.3"; sha256="00zb57gmpj86c7rvpqywpn4c5wl51immps935n3hd2fyk73vqljh"; depends=[ape commonsMath flexclust flexmix gplots matlab moments NbClust plyr RColorBrewer rJava]; broken = true; }; expert = derive2 { name="expert"; version="1.0-0"; sha256="0y9vcigvzhymalpv31b9nvmr86z1dz7x29yj838vks0dsv23rgrf"; depends=[]; broken = true; }; - expstudy = derive2 { name="expstudy"; version="1.0.0"; sha256="1b66pfx8smrwwrryxa8rmn4gv692hmllqzy968fp7n58qzciv550"; depends=[assertthat checkmate cli data_table dplyr dtplyr glue lifecycle magrittr pillar purrr rlang stringr tibble tidyr tidyselect withr]; broken = true; }; + expose = derive2 { name="expose"; version="0.0.3"; sha256="0dlxlxm3g9d8vmgp13i1825z1jzah94ih1vyif46s43xq0nf9anj"; depends=[e1071 foreach gam ggplot2 glmnet Matrix nnet polspline RColorBrewer Rcpp repmis SuperLearner xgboost]; broken = true; }; + exsic = derive2 { name="exsic"; version="1.1.1"; sha256="1k6nqs9i4iivxnk4nkimp6zvdly274wibkmx9n0wz01gnzxqil0p"; depends=[markdown stringr]; broken = true; }; + extfunnel = derive2 { name="extfunnel"; version="1.3"; sha256="162w5b2wjs3yqy8jisamsapav6swa8sskf1b6x5hglnrv3i4qyyy"; depends=[rmeta]; broken = true; }; + extraBinomial = derive2 { name="extraBinomial"; version="2.1"; sha256="0qmvl35f7n78kghszwyaz4wzbswqy4p98c3b6alzrc2ldsq6pq5z"; depends=[]; broken = true; }; + eyetracking = derive2 { name="eyetracking"; version="1.1"; sha256="0ajas96s25hjp3yrg42hp78qjhl1aih04mjirkskx32qsyq5hfpv"; depends=[]; broken = true; }; + fAsianOptions = derive2 { name="fAsianOptions"; version="3042.82"; sha256="13p1r93rgnf03wj0kkfpw4w4dlzd1ypkam50xqpjfm38qm4zvkds"; depends=[fBasics fOptions timeDate timeSeries]; broken = true; }; + fCertificates = derive2 { name="fCertificates"; version="0.5-4"; sha256="1a49gkzvb83lqqw65lxlaszpicn663hwi9wrbsb3f6z7znylkzaf"; depends=[fBasics fExoticOptions fOptions]; broken = true; }; + fExoticOptions = derive2 { name="fExoticOptions"; version="3042.80"; sha256="1b3y7j5ywic6xhsj2afq6y5f5l0npgav854rb87938rjckz95d4h"; depends=[fBasics fOptions timeDate timeSeries]; broken = true; }; + fExpressCertificates = derive2 { name="fExpressCertificates"; version="1.3"; sha256="0dcfwl0ib87p748hvwscm5ii9fhfarqfl3zqxa8kin2n0hrvkdb6"; depends=[fCertificates fExoticOptions fOptions Matrix mvtnorm tmvtnorm]; broken = true; }; + fMRIscrub = derive2 { name="fMRIscrub"; version="0.8.6"; sha256="0ky2a4p06p2c2dgb6wwa4spq4jsn4hvyk8c864c21j8hp6m4yaa9"; depends=[e1071 MASS pesel Rcpp RcppArmadillo robustbase]; broken = true; }; + fOptions = derive2 { name="fOptions"; version="3042.86"; sha256="1cqyggb1hb7z0gfgkziynz7nm85z0fn3bvz1iwpy49yy8ll7rfzr"; depends=[fBasics timeDate timeSeries]; broken = true; }; facilitation = derive2 { name="facilitation"; version="0.5.2"; sha256="0gyqa3njyynvdhfziq33xqc7cjhszii67mk8809ncvh6abkdx1hw"; depends=[animation Matrix Rcpp]; broken = true; }; factorQR = derive2 { name="factorQR"; version="0.1-4"; sha256="1vl01fm5qfyhnqbl5y86vkr50b8cv07vzlqs3v6smqaqq6yp4lv4"; depends=[lattice]; broken = true; }; factualR = derive2 { name="factualR"; version="0.5"; sha256="1wz8ibcmilcx62yy29nd2i1pdmjf7fm0g9i5s58gdn8cjlhnw1jl"; depends=[RCurl RJSONIO]; broken = true; }; + fakeR = derive2 { name="fakeR"; version="1.0"; sha256="0f4ngnd8s34j1327zp3aqnsiw0gfxkp1i24ng20hrmfl13s1qmxp"; depends=[mvtnorm polycor pscl VGAM]; broken = true; }; + fam2r = derive2 { name="fam2r"; version="1.2"; sha256="0pq5cmzwk3s8cz5x8dsfb2d6qfpapkrwbzvkqmqkhcwhwryy40mm"; depends=[Familias paramlink]; broken = true; }; + fanc = derive2 { name="fanc"; version="2.2"; sha256="1gdkxb2ay0lyldjpg4s2fbavjxl4q1bf9q438csqa4vzl5ywv2w8"; depends=[Matrix]; broken = true; }; fasteraster = derive2 { name="fasteraster"; version="1.1.1"; sha256="1ycr2h046jds2758xvxn00rhglx3zarbzn3r38j66j5pnz2iiq4f"; depends=[Rcpp]; broken = true; }; + fcd = derive2 { name="fcd"; version="0.1"; sha256="091wbf5iskcgyr7jv58wrf590qijb0qcpninmvm3xrwxi34r37xr"; depends=[combinat glmnet MASS]; broken = true; }; fctbases = derive2 { name="fctbases"; version="1.1.0"; sha256="1jf6ngdph45l105cib13lghan7d68hsjqdr8wsjz2kls8il6kz9s"; depends=[Rcpp RcppArmadillo]; broken = true; }; - fdacluster = derive2 { name="fdacluster"; version="0.1.0"; sha256="17vk3v8saf3xqab8h92k88l2xfwa3mb0x40p1mdgywgg23nvk3mm"; depends=[dplyr ggplot2 magrittr nloptr purrr Rcpp RcppArmadillo tibble tidyr]; broken = true; }; feedeR = derive2 { name="feedeR"; version="0.0.10"; sha256="1p64c7ibwn6k5k3vsjxrcjr84czild7g8bqw0yv4axk52vk5jfkx"; depends=[digest dplyr lubridate readr stringr tibble xml2]; broken = true; }; ffbase = derive2 { name="ffbase"; version="0.13.3"; sha256="1dp6lblfq2j7r1b4b8ls47jlx8j27n88d5vp8w116lb8pa01zxmk"; depends=[bit fastmatch ff]; broken = true; }; + fgof = derive2 { name="fgof"; version="0.2-1"; sha256="0bclkb3as0fl2gyggqxczndfyj9pfnni5pa3inpn5msrnjg4g2j2"; depends=[mvtnorm numDeriv]; broken = true; }; fidap = derive2 { name="fidap"; version="0.0.3"; sha256="0zq07395qx59xxb3cj5axhpkwnad2h88qbm3aan43q5cip9wi2bx"; depends=[httr jsonlite]; broken = true; }; + fipe = derive2 { name="fipe"; version="0.0.1"; sha256="055jav8h4wws76jahm2d5dj49wkvzchh3f2vk5d50pny4dc7smar"; depends=[dplyr forcats furrr future httr jsonlite lubridate magrittr purrr readr stringr tibble tidyr]; broken = true; }; fisheyeR = derive2 { name="fisheyeR"; version="0.9"; sha256="1w6va7gakqq2q8hsvdszpn8s2ysdfc648bk5p5v3wbl5s403bci8"; depends=[tkrplot]; broken = true; }; - fishflux = derive2 { name="fishflux"; version="0.0.1.5"; sha256="0ni3r37s6dvj3mmr04fnr7fird4x2wxdxq9vxzabcgmx9f4ydfiz"; depends=[BH curl dplyr fishualize ggplot2 httr plyr Rcpp RcppEigen RcppParallel rfishbase rstan rstantools StanHeaders tidybayes tidyr]; broken = true; }; + fitDRC = derive2 { name="fitDRC"; version="1.1.1"; sha256="09z9l27iwl0fd3zy6rsdhmy8qbm5d9a4wcaj5rxp7ynlnpi102aa"; depends=[]; broken = true; }; fitdc = derive2 { name="fitdc"; version="0.0.1"; sha256="1b1abib7jkl7a6r686r53qjw2ywb9q2h67is8691kkaqxpawg30p"; depends=[]; broken = true; }; + flars = derive2 { name="flars"; version="1.0"; sha256="06qma1ar1nj7n6g9alk1qydm5bkj6lsjx0pqkikxpb41d91civqk"; depends=[fda MASS Matrix Rcpp RcppEigen]; broken = true; }; flightplanning = derive2 { name="flightplanning"; version="0.8.4"; sha256="1n0mjrqlnfv4fvl512slw3d3vmlcn2lhf89jlfg2s0xfrd9k4pq8"; depends=[rgdal rgeos sp]; broken = true; }; fpca = derive2 { name="fpca"; version="0.2-1"; sha256="13b102026xlfb7c2rb3xsqsymm7xpmaxppaafjkb5dx0b1lz0jrc"; depends=[sm]; broken = true; }; fpmoutliers = derive2 { name="fpmoutliers"; version="0.1.0"; sha256="108bp3smk9jnckd5237xly4ywmal03rq1kidq5z61l6zrhc3yfh9"; depends=[arules doParallel foreach Matrix pmml pryr R_utils XML]; broken = true; }; fractalRegression = derive2 { name="fractalRegression"; version="1.0"; sha256="0lkxm3f9xz1c4kc81rfhd521q9jzsdb3ngrgn7nsawllpi2zrgwb"; depends=[Rcpp RcppArmadillo]; broken = true; }; - fsMTS = derive2 { name="fsMTS"; version="0.1.5"; sha256="1vxj9wkzpbk44hby4fdyhj72748c65by612kpphs6vmgzmw4y471"; depends=[freqdom glasso lars mpmi randomForestSRC]; broken = true; }; + frambgrowth = derive2 { name="frambgrowth"; version="0.1.0"; sha256="1xmy1zxp7aa2n8frlxhn1bl41zda1jldvvxb3q41yam3pslc8m1q"; depends=[]; broken = true; }; + freesurfer = derive2 { name="freesurfer"; version="1.6.8"; sha256="0ks6ms5vp38pykcg66w960nmfgq383iprrbbzw5dlx9xnrx4yhbh"; depends=[neurobase R_utils reshape2]; broken = true; }; + frost = derive2 { name="frost"; version="0.0.4"; sha256="03snjlq4b9j84v0yimc3xzgjvryzzi76b9n53k0s2lvv1yzrri7x"; depends=[]; broken = true; }; + fslr = derive2 { name="fslr"; version="2.24.1"; sha256="1psjqvjv8krlkj7dcfwygz563a4cpn7h21z330hxh5q10rwhabi8"; depends=[neurobase oro_nifti R_utils]; broken = true; }; ftnonpar = derive2 { name="ftnonpar"; version="0.1-88"; sha256="0df9zxwjpfc939ccnm1iipwhpf76b34v0x74nsi1mm1g927dfl0i"; depends=[]; broken = true; }; + fts = derive2 { name="fts"; version="0.9.9.2"; sha256="08pwhi19db173d4nsk5rl8xa8qmaddj4bn3cjxb8ql4kny59i57q"; depends=[BH zoo]; broken = true; }; fulltext = derive2 { name="fulltext"; version="2.0"; sha256="104wkas9azyb2drfaz1hrgbx2ilbb0k2mb8411l10rsbkqva099f"; depends=[aRxiv crul data_table digest fauxpas hoardr jsonlite magrittr microdemic pdftools rcrossref rentrez rplos storr tibble xml2]; broken = true; }; fuzzyFDR = derive2 { name="fuzzyFDR"; version="1.0"; sha256="0zd8i9did0d9gp42xjmwrccm32glabvvy08kl8phhwb1yaq53h7w"; depends=[]; broken = true; }; - gRim = derive2 { name="gRim"; version="0.2.7"; sha256="05w8dj69yc3lxdlfcmpr9yjdh33xv2vmjzlplf4kgdwmdjr2b9gf"; depends=[gRain graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen Rgraphviz]; broken = true; }; + g3viz = derive2 { name="g3viz"; version="1.1.4"; sha256="06wapd6vw72gc9i0raymd0l61l9qld967jxq5wjawpy8qrl3z6gk"; depends=[cgdsr htmlwidgets jsonlite stringr]; broken = true; }; + gRapfa = derive2 { name="gRapfa"; version="1.0"; sha256="07yzwzna9pdyzndxk6wwyl6v3gkfc7dvy1ixmdl3d38mcl1ahwyq"; depends=[igraph]; broken = true; }; gWidgets2RGtk2 = derive2 { name="gWidgets2RGtk2"; version="1.0-7"; sha256="14c933j0wj3lb5da75zxg3w3mfqh0nqk8rczbi4dnqd8sna6jks9"; depends=[gWidgets2 memoise RGtk2]; broken = true; }; - gamboostLSS = derive2 { name="gamboostLSS"; version="2.0-5"; sha256="1qlcsfv9k9aydv2bdfmbrilxfcmp3nzixnlr59k8idg1f7ph04cl"; depends=[mboost stabs]; broken = true; }; + gamm4_test = derive2 { name="gamm4.test"; version="0.1.0"; sha256="0ab6rksr88fsv6whp6cxyshpv5ixmf9lw51cl3rzk870r8q326wg"; depends=[doParallel foreach gamm4 Matrix mgcv plotly RColorBrewer]; broken = true; }; + gamma = derive2 { name="gamma"; version="1.0.1"; sha256="1m2wxqprfxb51fih5f9l4s0lk42gyglbgvhfxc0cm9n7pn3dhprl"; depends=[ggplot2 IsoplotR rlang rxylib]; broken = true; }; garchmodels = derive2 { name="garchmodels"; version="0.1.1"; sha256="1nmhsxhfbp7jn85jwnhm4p5kl0jc5n1bjwwwpia774ycr6krazwn"; depends=[dials dplyr magrittr parsnip purrr rlang rmgarch rugarch stringr tibble tidyr]; broken = true; }; + gcmr = derive2 { name="gcmr"; version="1.0.2"; sha256="0mh542na2byb4aha548lfkzllfnk4rmzcm23jm6642pndvxpnfmj"; depends=[betareg car Formula lmtest nlme sandwich sp]; broken = true; }; + gdalUtils = derive2 { name="gdalUtils"; version="2.0.3.2"; sha256="0krapdy50nd5dvcdflz39dzxpig3zklng3hgxavqg2nvwazalvsc"; depends=[foreach R_utils raster rgdal sp]; broken = true; }; gdmp = derive2 { name="gdmp"; version="0.2.0"; sha256="0fy8x9l6swrb78apwq9d9msz2y8dkfd2fkyp1pkmzxwdb85lmcdm"; depends=[]; broken = true; }; + gdns = derive2 { name="gdns"; version="0.5.0"; sha256="1bicimkxsyfg9yqaikapwlv8x9xdvsb00fqnfka07i6b63109sxh"; depends=[httr jsonlite magrittr stringi tinytest]; broken = true; }; + geneListPie = derive2 { name="geneListPie"; version="1.0"; sha256="0z2gawfzhm05dafj4zlj6ifmf0dy7p1hrpa59lzxrnrc0wr6laji"; depends=[]; broken = true; }; geneNetBP = derive2 { name="geneNetBP"; version="2.0.1"; sha256="0sp1chyln5k2zsq7cdhvrqxwr2nhrll1pdl1l5g6fd4gjl2m1nwk"; depends=[bnlearn ggm gRain graph igraph Rgraphviz scales]; broken = true; }; + genotypeR = derive2 { name="genotypeR"; version="0.0.1.8"; sha256="1kwzjn6hrnfizs44cz4a8qa4mdhdzqssc4axx0s6vngmkmsrffig"; depends=[colorspace doBy plyr reshape2 zoo]; broken = true; }; + geoR = derive2 { name="geoR"; version="1.8-1"; sha256="1lvgkpvv4a05lsb1dgphpv733lxbpcj7p2bj1yjjbfch8n04f1lr"; depends=[MASS RandomFields sp splancs]; broken = true; }; geobr = derive2 { name="geobr"; version="1.6.5"; sha256="08kl0215q524dq5scx2cm11a7m65xh0wzryl71grrlbqm5000pjj"; depends=[curl data_table httr sf]; broken = true; }; + georob = derive2 { name="georob"; version="0.3-14"; sha256="1an5mxq49kv038dplm9h6ngvsz71lkvjm34i7jjsdpaz3cyflp7v"; depends=[abind constrainedKriging fields lmtest nleqslv nlme quantreg RandomFields robustbase snowfall sp]; broken = true; }; geostatsp = derive2 { name="geostatsp"; version="1.8.6"; sha256="1ciyw84y5zbwsfqvl5dhq8swfpkqcmzhhvdm9hr5rhj3497sls9j"; depends=[abind Matrix numDeriv raster sp]; broken = true; }; + geotech = derive2 { name="geotech"; version="1.0"; sha256="18s7w6h1svc4n1hcgj5njfkf3nflkc53cdwsq5112p3442rlz33f"; depends=[]; broken = true; }; + geotoolsR = derive2 { name="geotoolsR"; version="1.1"; sha256="162s37j7wh14h91b6acn453bvgpk3cakfi7mgrdvr5bjdqqn7j7v"; depends=[dplyr geoR ggplot2 tidyr]; broken = true; }; gfmR = derive2 { name="gfmR"; version="1.1-0"; sha256="0qzzbcra1fnbp0h31b1as20yhmqmi7p62xrhikj64an9avg9b277"; depends=[faraway nnet]; broken = true; }; - ggRandomForests = derive2 { name="ggRandomForests"; version="2.0.1"; sha256="0f8m0j79d8wbac14zk1s8812rz6vgf04bz1iqq8p4d3sxwnvaj7q"; depends=[ggplot2 randomForest randomForestSRC survival tidyr]; broken = true; }; ggguitar = derive2 { name="ggguitar"; version="0.1.1"; sha256="1lmfs54h91gzcxin37v4flkywbq3fs648mm1h9ak03xlj5nagzsi"; depends=[dplyr ggplot2 gridExtra lazyeval readr tibble]; broken = true; }; gglogo = derive2 { name="gglogo"; version="0.1.5"; sha256="08wg0svcksdzchp6bdllmsnklxia3d0ygqwzgmqb2sga8nbkf5hl"; depends=[dplyr ggplot2 jpeg knitr magrittr plyr purrr reshape2 rlang tidyr]; broken = true; }; + ggloop = derive2 { name="ggloop"; version="0.1.0"; sha256="0jpbgb16jfsv557zvishln98y7nd6p1ryp6hxkrkmhp9p35vzvc0"; depends=[assertthat ggplot2 lazyeval magrittr plyr]; broken = true; }; + ggvoronoi = derive2 { name="ggvoronoi"; version="0.8.4"; sha256="1qq5iw1m90s060cffwq8agp5cs4vgzg9i3wbnr6c0p0r081wz4rs"; depends=[deldir ggplot2 raster rgeos sp]; broken = true; }; glacierSMBM = derive2 { name="glacierSMBM"; version="0.1"; sha256="0117fzz2b1lccs0kkwz59w2yysi72j54yvz7373pz11w7rjds84f"; depends=[raster sp udunits2]; broken = true; }; + glmdm = derive2 { name="glmdm"; version="2.60"; sha256="09vljki24fccqkvxkmg2i6a8pxqhfwm155b41m2q51lqaq29bfw7"; depends=[]; broken = true; }; + glmmsr = derive2 { name="glmmsr"; version="0.2.3"; sha256="1fbg5zji0xjr9q1yc6phsp37nsrj7nfs8yiri0j9s84wzgwjili1"; depends=[BH lme4 Matrix numDeriv R6 Rcpp RcppEigen]; broken = true; }; + globalGSA = derive2 { name="globalGSA"; version="1.0"; sha256="1f3xv03m6g2p725ff0xjhvn2xcfm7r7flyrba080i4ldy6fd8jg8"; depends=[]; broken = true; }; + glrt = derive2 { name="glrt"; version="2.0"; sha256="0p2b0digndvnn396ynv56cdg436n3ll7pxkb81rs3dhwbyqyc948"; depends=[survival]; broken = true; }; + goldi = derive2 { name="goldi"; version="1.0.1"; sha256="191ac02bwrxr3khq6qirhxzfhv7pqfhqyg7jb473p5vwygpvc53l"; depends=[dplyr futile_logger magrittr Rcpp RcppArmadillo SnowballC tm]; broken = true; }; + goodpractice = derive2 { name="goodpractice"; version="1.0.2"; sha256="08rnm8z0pry5mwpc7p37r6f2rd56dry9djpcvvs9yl170w56psx0"; depends=[clisymbols covr crayon cyclocomp desc jsonlite lintr praise rcmdcheck rstudioapi whoami withr xml2 xmlparsedata]; broken = true; }; googlesheets = derive2 { name="googlesheets"; version="0.3.0"; sha256="11q07nxys72wkxx9mawmjyf20gvwvrb7h3gpa73h6lgh2vgrwnv8"; depends=[cellranger dplyr httr jsonlite purrr readr stringr tibble tidyr xml2]; broken = true; }; + gps = derive2 { name="gps"; version="1.0"; sha256="1yzmv0zpgnis3v2f7m9j02zxw31kgcw9fny3vrvk4637jzz2ij56"; depends=[Matrix]; broken = true; }; + gradDescent = derive2 { name="gradDescent"; version="3.0"; sha256="1jxgvnjw9qk5bkb0fw4kyks4vb9d1933jn79ry0w6956mq2xbb79"; depends=[]; broken = true; }; graphscan = derive2 { name="graphscan"; version="1.1.1"; sha256="1dgjb0grdymhimdgwnddjcivgy2i9r1i1nni4v9mx0447skcahk9"; depends=[ape rgl snowfall sp]; broken = true; }; gremes = derive2 { name="gremes"; version="0.1.0"; sha256="1ih5303sis2icic1q13gh6h3qbb1fzw0j7pdla75csiffjc77hw7"; depends=[abind copula gRbase gRim igraph mev mvtnorm quadprog]; broken = true; }; + greyzoneSurv = derive2 { name="greyzoneSurv"; version="1.0"; sha256="115i0d4fy4p4g4vd419hj9f23hi8cbiyfilgpgmag91ilr1xpcdp"; depends=[Hmisc survAUC survival]; broken = true; }; grouped = derive2 { name="grouped"; version="0.6-0"; sha256="1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976"; depends=[MASS]; broken = true; }; gsbm = derive2 { name="gsbm"; version="0.2.1"; sha256="16j4g0wl9phmx85dbrzxsdjcv0nnipgj214fvbz9m6n66khr5pkp"; depends=[doParallel foreach Matrix RSpectra softImpute]; broken = true; }; + gsrsb = derive2 { name="gsrsb"; version="1.1.1"; sha256="0yjxzc69ihsx5ni6jb4shsvl9vskqlls3gmpckmzx5nsh1l5s5vb"; depends=[ldbounds mvtnorm xtable]; broken = true; }; + gtcorr = derive2 { name="gtcorr"; version="0.2-1"; sha256="1n56zmyv58jwr95p453jb86j82pdnq57gfc8m15jndjc9p31zl0m"; depends=[]; broken = true; }; guf = derive2 { name="guf"; version="1.0.2"; sha256="1dfmja2da211pcid4hr7x9q0sgz37756rpykm1ax862avdl8hsmc"; depends=[]; broken = true; }; gwdegree = derive2 { name="gwdegree"; version="0.1.1"; sha256="0p06hjp7vay83kbpqsgfr1d8z3ayv483rxbv86fdka94gvi1sjyc"; depends=[dplyr ergm ggplot2 gtools magrittr network scales shiny shinydashboard sna tidyr]; broken = true; }; gwerAM = derive2 { name="gwerAM"; version="1.0"; sha256="1c3rzd1jf52a4dn63hh43m9s9xnjvqn67amlm9z1ndrnn6fwfg1b"; depends=[MASS Matrix]; broken = true; }; gwsem = derive2 { name="gwsem"; version="2.1.4"; sha256="0qqcbkxkkfwraz750wvk1f86mqy6f2ndkspd8qr0ypnnlh3i0yzl"; depends=[BH data_table lifecycle OpenMx qqman Rcpp]; broken = true; }; - haarfisz = derive2 { name="haarfisz"; version="4.5"; sha256="1qmh4glwzqwqx3pvxc71rlcimp1l0plgdf380v9hk0b4gj7g3pkf"; depends=[wavethresh]; broken = true; }; happybiRthday = derive2 { name="happybiRthday"; version="0.0.1"; sha256="0rrvi5kx09p74xwxvqcwibbh4qjlk4jxb89grx74chjxk9ak2yv8"; depends=[data_table dplyr gh lubridate tidyr]; broken = true; }; + hbm = derive2 { name="hbm"; version="1.0"; sha256="0qz28azm91a6pbss1mfc47a21d3q9rs3mmw0kgwc7i2a2m43mysm"; depends=[doParallel foreach Matrix]; broken = true; }; hddtools = derive2 { name="hddtools"; version="0.9.4"; sha256="011yhs8c6riimz63pa2am56n5aip2yk5gryx2amvk29pzp1v6my9"; depends=[curl raster readxl rgdal sp tidyr XML zoo]; broken = true; }; - hdpGLM = derive2 { name="hdpGLM"; version="1.0.0"; sha256="04mn0cbbx66218rsd273yh29h28f1xl8k0whwlyn6hrg035mlk0x"; depends=[coda data_table dplyr formula_tools ggjoy ggplot2 ggpubr ggridges Hmisc isotone LaplacesDemon magrittr MASS MCMCpack mvtnorm purrr questionr Rcpp RcppArmadillo rprojroot stringr tibble tidyr tidyverse]; broken = true; }; healthforum = derive2 { name="healthforum"; version="0.1.0"; sha256="13ih00amv9hrpngm6pxc8vzqzhx8c0yqgaprxdcp5li90lg5r3av"; depends=[magrittr purrr rvest stringr tokenizers xml2]; broken = true; }; + heavy = derive2 { name="heavy"; version="0.38.196"; sha256="05k788ynw9fhhmjydzp8dbk1vhl44j2rz2shqwn02i40jmwdvwrk"; depends=[]; broken = true; }; + hiPOD = derive2 { name="hiPOD"; version="1.0"; sha256="1i15ickz2s0kffh99qq30pl5hsl0lbj0kp55jnbv4x72hndzhmla"; depends=[rgl]; broken = true; }; + hierband = derive2 { name="hierband"; version="1.0"; sha256="0d95hrgkd8b5sww3wsgs6v9zg9pm71ick8x8kj8d6vyib350h6yn"; depends=[]; broken = true; }; + hiertest = derive2 { name="hiertest"; version="1.1"; sha256="17maf1w4vkqknxff3f00fzv136j3dbbigyzl4vq4sln9j27w10r3"; depends=[]; broken = true; }; + highD2pop = derive2 { name="highD2pop"; version="1.0"; sha256="1s4v6m2d3vzvxsgmjzczv1zj3kv3ygvv6gbkkbjwsdhkvc1rdmf0"; depends=[fastclime]; broken = true; }; + hillmakeR = derive2 { name="hillmakeR"; version="0.2"; sha256="1baynibgn4xqmpsxna8irggxvdc484mq5nza00rwg58vh1bc7wzq"; depends=[]; broken = true; }; + hmgm = derive2 { name="hmgm"; version="1.0.3"; sha256="12gaz2pi9ny7y772yzrfvl02p3n89cq1l5dzmcksd172gv9ayyz1"; depends=[binaryLogic glmnet MASS Matrix nat Rcpp rgl]; broken = true; }; + hmi = derive2 { name="hmi"; version="1.0.0"; sha256="0fjcw13mkxza6nkq3fhp188ga1sjspq1sc6wjm4hy13xh7vdjpqq"; depends=[boot broom_mixed coda linLIR lme4 MASS Matrix MCMCglmm mice msm mvtnorm nlme nnet ordinal pbivnorm rlang tmvtnorm]; broken = true; }; + hmma = derive2 { name="hmma"; version="1.1.0"; sha256="1qsvczqq44h46z0nfblv4rarbg64imz8m0jhxdhva27kbzdvqf97"; depends=[bnlearn graph MCMCpack mhsmm Rgraphviz]; broken = true; }; hockeyR = derive2 { name="hockeyR"; version="0.1.1"; sha256="1rzm67ib4i7qa0x302g9k5bm5vabg39l1da5brnkkh9fp6v37lb6"; depends=[dplyr glue httr janitor jsonlite lubridate magrittr polite purrr rvest stringr tidyr zoo]; broken = true; }; + homtest = derive2 { name="homtest"; version="1.0-5"; sha256="1lnqlg3dwq174ic6dbjllysw5fjy5kvvgbl6gvabjmcs66z27fp0"; depends=[]; broken = true; }; horserule = derive2 { name="horserule"; version="1.0.0"; sha256="0d348pn0ld7lr9lfl1z05905l9kl296j0xic1pib6r5l1c5600r9"; depends=[gbm ggplot2 inTrees MASS mvnfast randomForest RColorBrewer Rdpack]; broken = true; }; + hsicCCA = derive2 { name="hsicCCA"; version="1.0"; sha256="1d4lkjrihwhl3jrsj7250ccd90nfwpllyavc3mp15fhcy2jnjci8"; depends=[]; broken = true; }; + hsm = derive2 { name="hsm"; version="0.2.0"; sha256="066shjikqrrkxpnra4zknax1a0sk5nx9ms1br58vwqqvqq479rym"; depends=[]; broken = true; }; + hsmm = derive2 { name="hsmm"; version="0.4"; sha256="1fh8c5kfv4brygdq6bfkrhrhkm99mxl4ljb1mhp9nf2bjlla11mc"; depends=[mvtnorm]; broken = true; }; + hypothesestest = derive2 { name="hypothesestest"; version="1.0"; sha256="0g8sm386m1zm9i3900r62x83wb600cy8hqk7dlvbx6wcgrxg82sm"; depends=[]; broken = true; }; + iCAMP = derive2 { name="iCAMP"; version="1.3.4"; sha256="0hzl18irvndnka8vkza0f9sspfj4708dmzsdvbnv7mz4s41vqn11"; depends=[ape bigmemory Hmisc minpack_lm nortest permute vegan]; broken = true; }; iRF = derive2 { name="iRF"; version="2.0.0"; sha256="1ll4lxg743p2zipxcq13yjsc7j7dk766dcyixwxilllbisg0dh8y"; depends=[AUC data_table doParallel dplyr foreach Matrix RColorBrewer Rcpp]; broken = true; }; + ibmsunburst = derive2 { name="ibmsunburst"; version="0.1.1"; sha256="0dxsdsimqgs7lbbfx7h8l2r6xpwgy2r7cf2y1v8hkgapf6n5kjnk"; depends=[htmlwidgets jsonlite]; broken = true; }; ic50 = derive2 { name="ic50"; version="1.4.2"; sha256="1a5ddmbdfr3ls132fvalbkh4yaawv9k58rgpy54s5qddrm6aas2s"; depends=[]; broken = true; }; identity = derive2 { name="identity"; version="0.2-1"; sha256="1j5wb5cj5j49in2g6r1shdm4ri4cfzj22hpqazvcmq4dm291sdi9"; depends=[]; broken = true; }; ideq = derive2 { name="ideq"; version="0.1.4"; sha256="06xk9ghvh3fb79lbkmbqsk07xj06qaigiw41rzbi3bji3fjq1prw"; depends=[matrixcalc mvtnorm pdist Rcpp RcppArmadillo rgen]; broken = true; }; idm = derive2 { name="idm"; version="1.8.2"; sha256="04f0i0kwdxywmj2i184knx5a5v9svx0lbam6wpz49hghg7qpy0w5"; depends=[animation ca corpcor dummies ggplot2 ggrepel]; broken = true; }; ifultools = derive2 { name="ifultools"; version="2.0-23"; sha256="16a7rbvlym3bnfm93ikr5kl0l86ppk0s41fva6idvcx765g3fqkk"; depends=[MASS splus2R]; broken = true; }; - iheiddown = derive2 { name="iheiddown"; version="0.8.6"; sha256="0w36w875fzxx8parjc6lb9nwvfjs0p2vv1pzd12cb160pgn9y7mc"; depends=[bib2df bookdown crayon dplyr fs gender ggplot2 pdftools purrr readr remotes rlang rmarkdown rstudioapi servr stringr tibble tidytext usethis xaringan]; broken = true; }; ilc = derive2 { name="ilc"; version="1.0"; sha256="0hs0nxv7cd300mfxscgvcjag9f2igispcskfknb7sn7p8qvwr5ki"; depends=[date demography forecast rainbow survival]; broken = true; }; + immer = derive2 { name="immer"; version="1.2-19"; sha256="1aqqrrw6kgynzam3jaj2303wfs1d925zwd3hrhkjsjgvdmw2vi2p"; depends=[CDM coda psychotools Rcpp RcppArmadillo sirt TAM]; broken = true; }; + imputeMDR = derive2 { name="imputeMDR"; version="1.1.2"; sha256="0ds5a4wav9vb9z5nji8hv5l76310rd970xf702fd0ckx1sh6rgd7"; depends=[]; broken = true; }; imputePSF = derive2 { name="imputePSF"; version="0.1.0"; sha256="0xfd2mybg0cbi3n35j28s4xq4iwr5rq4mqwgdqml7l2rlzidcwc8"; depends=[PSF]; broken = true; }; inTrees = derive2 { name="inTrees"; version="1.2"; sha256="1mwn2ijkyw0y9xcgrr56wxd2326ikarlsi79l59dplvlx2iwbi6c"; depends=[arules data_table gbm RRF xgboost xtable]; broken = true; }; incadata = derive2 { name="incadata"; version="0.9.1"; sha256="0987zazkp3cxvk88i3yqb70s2i1cg108vc8wyhh2867s3rqdrpgh"; depends=[decoder rvest sweidnumbr xml2]; broken = true; }; inference = derive2 { name="inference"; version="0.1.0"; sha256="0j92isfkbhk13yx2hd3a5dd7ikcbgjc04zisd1n5kmg6ajw2aj6r"; depends=[sandwich]; broken = true; }; + infra = derive2 { name="infra"; version="0.1.2"; sha256="0jycnnmrrjq37lv67xbvh6p63d6l4vbgf3i1z9y7r75d6asspzn1"; depends=[]; broken = true; }; + infutil = derive2 { name="infutil"; version="1.0"; sha256="02d0hfbkdqjj0lm1fzwwxy60831kbcjn2m4rfblpib0krkbpz72n"; depends=[ltm]; broken = true; }; + intdag = derive2 { name="intdag"; version="1.0.1"; sha256="0mb0a1ccc67clfa75b4hl901zdmx7fxw713c4ybx3i5wc2ldl8ph"; depends=[]; broken = true; }; interacCircos = derive2 { name="interacCircos"; version="1.0.0"; sha256="1waj0saavvaw2qzhbwcj1k0a2dnmq7zbkdnmb93xj6j1lhfjhbdy"; depends=[htmlwidgets jsonlite plyr RColorBrewer]; broken = true; }; + interferenceCI = derive2 { name="interferenceCI"; version="1.1"; sha256="19ky10nn6ygma6yy5h1krxx61aikh3yx5y39p68a944mz8f72vsn"; depends=[gtools]; broken = true; }; + intsurvbin = derive2 { name="intsurvbin"; version="0.0.4"; sha256="119zjn1agl2j4fj4yg1pq1sqskzw93xfzppmc5n1x8llmfbxkqsj"; depends=[mgcv MHadaptive msm mvtnorm tmvtnorm]; broken = true; }; + intubate = derive2 { name="intubate"; version="1.0.0"; sha256="03ikqwai7wdahdfyzdy42xs8qpdhl9gmbak2qd82yxjl62956i8c"; depends=[]; broken = true; }; ipmisc = derive2 { name="ipmisc"; version="6.0.2"; sha256="1dn815p2k1v371pv5fra6541zwc1hyjzxlx11m8pgfcyrfgmicyk"; depends=[dplyr magrittr rlang tibble tidyr zeallot]; broken = true; }; ipptoolbox = derive2 { name="ipptoolbox"; version="1.2"; sha256="0scbny4crgr23qcp0vgsxhwmj5g5q5c1c4mb5mmb5njyvc34s01l"; depends=[AlgDesign copula evd kolmim triangle]; broken = true; }; + irtProb = derive2 { name="irtProb"; version="1.2"; sha256="12wnvbzkh0mx9i3iyh1v2n2f2wjsjj7ad3dgv9xj949x4nbz16j0"; depends=[lattice moments]; broken = true; }; isoreader = derive2 { name="isoreader"; version="1.3.2"; sha256="0d0h57imbis7g58gdn7j0pwmc1s71b8ymqwqkg3byagd0yhrxf0w"; depends=[dplyr future glue lubridate magrittr progress purrr R_utils readr rlang stringr tibble tidyr tidyselect UNF vctrs]; broken = true; }; itemanalysis = derive2 { name="itemanalysis"; version="1.0"; sha256="1ksbd69mca45jlr2gpars87cf4jfm5rx6sz009sv6a83x831x5rq"; depends=[car ggplot2 polycor]; broken = true; }; + jSonarR = derive2 { name="jSonarR"; version="1.1.1"; sha256="054q3ly471xa64yyz2as6vkr440ip1y8n5wl6s3zbhqy3bqkdqif"; depends=[jsonlite RCurl]; broken = true; }; james_analysis = derive2 { name="james.analysis"; version="1.0.1"; sha256="1b2n4ds4ivfk564z87s2rxjl9j0y4drd3cmyv8jqpccmdvx1137d"; depends=[naturalsort rjson]; broken = true; }; jdx = derive2 { name="jdx"; version="0.1.4"; sha256="0jqf0nkdyv9g4rifzlkls0n64fdcma2yphwl478772jlgfmxm2jb"; depends=[rJava]; broken = true; }; joineRmeta = derive2 { name="joineRmeta"; version="0.1.2"; sha256="0lkj3rry8kvdcl3dxrkvnql8rl3fsgc4lk5qdifhl41aws2q7ccs"; depends=[ggplot2 gridExtra gtools JM joineR lme4 MASS Matrix meta msm statmod survival]; broken = true; }; + jointPm = derive2 { name="jointPm"; version="2.3.1"; sha256="1c2cn9sqwfyv9ksd63w8rrz0kh18jm2wv2sfdkgncjb7vfs4hbv9"; depends=[]; broken = true; }; jsr223 = derive2 { name="jsr223"; version="0.3.4"; sha256="0rir9v0qhnbl2rgkx1qz2ydj68ba9ccbdzsg6y1acczdhpl03j51"; depends=[curl jdx R6 rJava]; broken = true; }; + kdetrees = derive2 { name="kdetrees"; version="0.1.5"; sha256="1plf2yp2vl3r5znp5j92l6hx1kgj0pzs7ffqgvz2nap5nf1c6rdg"; depends=[ape distory ggplot2]; broken = true; }; kmcudaR = derive2 { name="kmcudaR"; version="1.1.0"; sha256="16dkv9ag5375zc23nqakbg7v6knxvh1pips9rjsls0d7rw2bg1bs"; depends=[Rcpp RcppEigen]; broken = true; }; + knnIndep = derive2 { name="knnIndep"; version="2.0"; sha256="1fwkldgs2994svf3sj90pwsfx6r22cwwa22b30hdmd24l8v9kzn7"; depends=[]; broken = true; }; kolmim = derive2 { name="kolmim"; version="1.0"; sha256="0g1i0cazi4nhfwdd3ywqrar1sn7bw77w38qjii045w5vqg05srkp"; depends=[]; broken = true; }; + kulife = derive2 { name="kulife"; version="0.1-14"; sha256="070ayy6fr9nsncjjljikn2i5sp2cx3xjjqyc64y2992yx74jgvvd"; depends=[]; broken = true; }; kzfs = derive2 { name="kzfs"; version="1.5.0.2"; sha256="0x0fc807p0pwsjkhjq51ymwr9nhs6cb0m82029cz8bbn3yf6cymq"; depends=[digest kzft]; broken = true; }; kzft = derive2 { name="kzft"; version="0.17"; sha256="1y6almhs1x21cr4bbf5fj3mnhp65ivzs869660cyg70sva853sv7"; depends=[polynom]; broken = true; }; + labelrank = derive2 { name="labelrank"; version="0.1"; sha256="03pmpkjdhgw80473kdzdz4s4828pa8f5bja2zqicxrhvyvicvz6f"; depends=[pdist]; broken = true; }; + lacrmr = derive2 { name="lacrmr"; version="1.0.3"; sha256="0zpfc4a7krwkwbf31idpmdzks4qassqnhxk1f9fcq1qjzqzhjkvi"; depends=[dplyr httr janitor jsonlite magrittr sjmisc stringr]; broken = true; }; laercio = derive2 { name="laercio"; version="1.0-1"; sha256="0la6fxv5k9zq4pyn8dxjiayx3vs9ksm9c6qg4mnyr9vs12z53imm"; depends=[]; broken = true; }; + landmap = derive2 { name="landmap"; version="0.0.13"; sha256="04pycbi0pf2n92xzs650h2dc8yzqfvaxn8m6yxqprf3y7qjgys9c"; depends=[forestError gdalUtils geoR glmnet kernlab maptools matrixStats mlr nnet parallelMap ParamHelpers plyr ranger raster rgdal rpart sp spdep xgboost]; broken = true; }; lass0 = derive2 { name="lass0"; version="1.1.0"; sha256="01fafgyhi3fw8ldjw2gf0z9w1si7il3ailwm197fxmw4wqgys9fl"; depends=[doRNG foreach ismev lpSolve]; broken = true; }; - lba = derive2 { name="lba"; version="2.4.4"; sha256="0izqndm992zv3sg8v5lpnxbdbxhpxl6hq3bf6xgq3pnw8vl3f6nb"; depends=[alabama MASS plotrix rgl scatterplot3d]; broken = true; }; + latentcor = derive2 { name="latentcor"; version="1.2.0"; sha256="1kqsiaz84cln6l6ajzn2grrc6bch7pfsrr39l2jvkmcnp8n5cimi"; depends=[chebpol fMultivar ggplot2 heatmaply MASS Matrix mnormt pcaPP plotly]; broken = true; }; + lcc = derive2 { name="lcc"; version="1.1.3"; sha256="0hbv0nv421ldk10b4qr8dq7ww4w1342sl3s8gw0slfigxbbxv4bh"; depends=[doRNG doSNOW foreach ggplot2 hnp nlme]; broken = true; }; + leafletR = derive2 { name="leafletR"; version="0.4-0"; sha256="0j1i971dl3smq8rcsa5s4rfmmk936k2q6xa4hppfzwhrxs3xkkkx"; depends=[brew jsonlite]; broken = true; }; + leastcostpath = derive2 { name="leastcostpath"; version="1.8.0"; sha256="1106wh2yy048jimiyb3gwm9d00jfq4wk0dnj4a5sfk90rkg28acw"; depends=[gdistance Matrix pbapply raster rgdal rgeos sp]; broken = true; }; + lfstat = derive2 { name="lfstat"; version="0.9.4"; sha256="0lm9fyw45kdkkjldkmagykn9p3l3jlw2ky3h00f7j6rqkizjm6r0"; depends=[dygraphs lattice latticeExtra lmom lmomRFA plyr xts zoo]; broken = true; }; + lgcp = derive2 { name="lgcp"; version="1.7"; sha256="0i45n31wxznl6485zsa5nnfhy4f3lya9sijyavdcwx0v8j2gkpvr"; depends=[fields iterators maptools Matrix ncdf4 RandomFields raster rgeos rpanel sp spatstat spatstat_core spatstat_geom spatstat_utils]; broken = true; }; libproj = derive2 { name="libproj"; version="8.1.0-1"; sha256="16mavs0kpbn1lskfgyzgw5ns270kdvvh2991c8w26cyl23zrcys6"; depends=[cpp11 rappdirs]; broken = true; }; likeLTD = derive2 { name="likeLTD"; version="6.3.0"; sha256="1mjf4667xd9pf2684d7vqaj54l5s9pgljn4vkfp32wzbfknq6y8r"; depends=[DEoptim gdata ggplot2 gtools rtf]; broken = true; }; limitplot = derive2 { name="limitplot"; version="1.2"; sha256="0wj1xalm80fa5pvjwh2zf5hpvxa3r1hnkh2z9z285wkbrcl0qfl2"; depends=[]; broken = true; }; + linLIR = derive2 { name="linLIR"; version="1.1"; sha256="1v5bwki5j567x2kndfd5nli5i093a33in31025h9hsvkbal1dxgp"; depends=[]; broken = true; }; + linear_tools = derive2 { name="linear.tools"; version="1.3.0"; sha256="14lp3gifzbid82lkr7rdqajz2abp8m7y8irpwx6s8w66djjfckda"; depends=[ggplot2 magrittr plyr pryr scales stringr]; broken = true; }; lisp = derive2 { name="lisp"; version="0.1"; sha256="025sq46277q9i21189cbmx5dnrh5wfshc5k6la1wjilhr1iqf6nj"; depends=[]; broken = true; }; + listdtr = derive2 { name="listdtr"; version="1.1"; sha256="13p27cx2w3qb1rcizrva2ib7x7sm310gasi7n5pvvd8rkpwaypzq"; depends=[ggplot2]; broken = true; }; lmSupport = derive2 { name="lmSupport"; version="2.9.13"; sha256="0ln5c91mbxkymgnv2nw5m3nrm5bwckpikgb9x1qhmjc55m98wkb8"; depends=[AICcmodavg car gplots gvlma lme4 pbkrtest psych pwr]; broken = true; }; lmem_qtler = derive2 { name="lmem.qtler"; version="0.1.1"; sha256="0qbllj66y294n1m8dsyrnwyvzscbzg8mb2dmjyghcrfaz925vkin"; depends=[lattice lme4 pastecs qtl stringr]; broken = true; }; - lmfor = derive2 { name="lmfor"; version="1.5"; sha256="1r301ajcp9ag23n0nw1rgwg8ss5cvinwqargbdg0jpqbhdrgaq7y"; depends=[magic nlme spatstat]; broken = true; }; + longclust = derive2 { name="longclust"; version="1.2.3"; sha256="1g45d5pak2vhbjrcmxxrk9jyrdxkqwy45phzpsw6b2bjyrgr4i7g"; depends=[]; broken = true; }; + loop = derive2 { name="loop"; version="1.1"; sha256="1gr257fm92rfh1sdhsb4hy0fzwjkwvwm3v85302gzn02f86qr5dm"; depends=[MASS]; broken = true; }; loose_rock = derive2 { name="loose.rock"; version="1.2.0"; sha256="13p3mp8m2in3cbcwgj42hgzrwxmgalc2v0z3r1zn1n77iqjvcd7r"; depends=[digest dplyr futile_options ggplot2 httr MASS reshape2]; broken = true; }; - maGUI = derive2 { name="maGUI"; version="3.0"; sha256="1ak2sa6y766v5zh54bf7j9hklmkia40nsdchyw834ybb9ijjyjsm"; depends=[Biobase gWidgets2 gWidgets2RGtk2 impute limma Rgraphviz RGtk2 ssize]; broken = true; }; + ltbayes = derive2 { name="ltbayes"; version="0.4"; sha256="0kv5k56hmc1m7bv5pmmmk46822szsgwqgpwydn0x56az7xn6hjk6"; depends=[mcmc MHadaptive numDeriv]; broken = true; }; machQA = derive2 { name="machQA"; version="0.1.4"; sha256="1rdrjy9sxql2c9y691a1jrmgsv7m1ihsschixxb6wc7aahf7mav6"; depends=[machina plyr]; broken = true; }; machina = derive2 { name="machina"; version="0.1.6"; sha256="009mzqb5jgnilj9b5ldmm5600008bljlqacm8jjxvqsfnfdfg8zv"; depends=[DT httr jsonlite lubridate rhandsontable xts]; broken = true; }; + majesticR = derive2 { name="majesticR"; version="0.1.1"; sha256="0x23p4js9cfnj8c33cp0fql5pvs4fn4frbbzpq85mxjhiifkxxpf"; depends=[jsonlite urltools]; broken = true; }; + marl = derive2 { name="marl"; version="1.0"; sha256="0rndnf3rbcibv3gsrw1kfp5zhg37cw9wwlz0b7dbwprd0m71l3pm"; depends=[]; broken = true; }; + matR = derive2 { name="matR"; version="0.9.1"; sha256="1qw2vqmpq7gc3dmr9r000ccjj7xa0h82waxnvryz3l17ggryyjjm"; depends=[BIOM_utils MGRASTer]; broken = true; }; + matrixpls = derive2 { name="matrixpls"; version="1.0.13"; sha256="0m9gqq5waicj3znlsyz50cj6w1x6rkvfwknavhxid8r4p9h891ak"; depends=[assertive lavaan MASS matrixcalc psych]; broken = true; }; + mcGlobaloptim = derive2 { name="mcGlobaloptim"; version="0.1"; sha256="1p8841y9a4yq51prv6iirgw9ln8jznx8nk547sc5xlznksjy1g9n"; depends=[randtoolbox snow]; broken = true; }; + mccca = derive2 { name="mccca"; version="0.1.0"; sha256="111phszicjn8ihcdlg9x41j3jllbz3hl12m58w1l25jd6mrrss9v"; depends=[dummies ggplot2 magic RColorBrewer stringr wordcloud]; broken = true; }; + mcll = derive2 { name="mcll"; version="1.2"; sha256="0i9zqbh0l9a9mv4558gbdq9mh52chanykyfwmiymmxygxhp809sz"; depends=[locfit statmod]; broken = true; }; mcmcabn = derive2 { name="mcmcabn"; version="0.4"; sha256="0ym7ngai8pv9xalh1s53p8f96s8xpc05zi6ryih2rjv449ib06kq"; depends=[abn coda cowplot ggplot2 ggpubr gRbase]; broken = true; }; mcsm = derive2 { name="mcsm"; version="1.0"; sha256="13sx7s3ywis5n4a70ld2szld9fb8jkfsc82dy6iskhy17vy8pml0"; depends=[coda MASS]; broken = true; }; + mdmb = derive2 { name="mdmb"; version="1.5-8"; sha256="0m0fgvz2cmwxqpsrb8ir8vrmb9y99ddc24s9g08w68cakig6pd19"; depends=[CDM coda miceadds Rcpp RcppArmadillo sirt]; broken = true; }; + mdsOpt = derive2 { name="mdsOpt"; version="0.5-1"; sha256="01gcrlmcgi1phz4952bkbf2xzd2j06lq1d6cn3nf3jz9sy5xy7f8"; depends=[animation clusterSim plotrix smacof smds spdep symbolicDA]; broken = true; }; meaRtools = derive2 { name="meaRtools"; version="1.0.4"; sha256="1nxyvdq4670696mhg0svxxlvk9hnr8szai8b18pw6754kmw1bjvn"; depends=[emdist ggplot2 gridExtra gtools lattice plyr Rcpp reshape2]; broken = true; }; medmod = derive2 { name="medmod"; version="1.0.0"; sha256="1f7bzdcjnbz9izlfblxcaa85qxx8kzn62qgjd3qlb7jl7mdy5q54"; depends=[ggplot2 jmvcore lavaan R6]; broken = true; }; met = derive2 { name="met"; version="0.1.0"; sha256="0714103xzc4n178307czxmcv7ygjiigjr9b6xnj240ljp7qmln19"; depends=[DiPs]; broken = true; }; + metaplotr = derive2 { name="metaplotr"; version="0.0.3"; sha256="01iala6cxsxv30fnlh80md5mpy3ksd2piw90zcls8f68g1c6v1jy"; depends=[ggplot2 gridExtra]; broken = true; }; + meteogRam = derive2 { name="meteogRam"; version="1.0"; sha256="167gyxjnl4dyfqs3znv8sdpkvpqdxzdqi1g730s30gycrm9snap9"; depends=[ggplot2 RadioSonde]; broken = true; }; + mgpd = derive2 { name="mgpd"; version="1.99"; sha256="0cxpgza9i0hjm5w1i5crzlgh740v143120zwjn95cav8pk8n2wyb"; depends=[corpcor evd fields numDeriv]; broken = true; }; + miRada = derive2 { name="miRada"; version="1.13.8-8"; sha256="1m6rm65pv4r16r0s5ih69nr3v2rnpsvpdpk07pi7k4f7v9wck71v"; depends=[]; broken = true; }; miceMNAR = derive2 { name="miceMNAR"; version="1.0.2"; sha256="1s607icaf3c25mn8xdi3zkzmm8m7qd9a6vjdlz5j7ig2gc9f2y2d"; depends=[GJRM mice mvtnorm pbivnorm sampleSelection]; broken = true; }; microclustr = derive2 { name="microclustr"; version="0.1.0"; sha256="04xn8p4wgmxq1jbxawq0rhx6l7y1kddlbdfid8zsi4x4arkz7hvp"; depends=[Rcpp]; broken = true; }; migrbc = derive2 { name="migrbc"; version="2.0.9"; sha256="1nbxdm70a9lvbp4sw78719hdpbqnziw1y7r4xk8i390q2c195am1"; depends=[dplyr futile_logger lubridate Rcpp stringr]; broken = true; }; + minxent = derive2 { name="minxent"; version="0.01"; sha256="1a0kak4ff1mnpvc9arr3sihp4adialnxxyaacdgmwpw61wgcir7h"; depends=[]; broken = true; }; mipred = derive2 { name="mipred"; version="0.0.1"; sha256="0kijn2xj0dh28rm2sjgd8j1a3c5avc3fjfvvcmzfasvxqdjflv6j"; depends=[mice]; broken = true; }; miraculix = derive2 { name="miraculix"; version="0.9.23"; sha256="0i08v5hq43296k3sa7akpq4h5dmvpkgn7cfpqwdyp0qaxkqk0k0s"; depends=[RandomFieldsUtils]; broken = true; }; + mixedCCA = derive2 { name="mixedCCA"; version="1.4.6"; sha256="177kd1cj1ziw1knxklgpz04wjrqazg4xia6q8jspnik6kra8crqa"; depends=[chebpol fMultivar irlba MASS Matrix mnormt pcaPP Rcpp RcppArmadillo]; broken = true; }; mixlink = derive2 { name="mixlink"; version="0.1.5"; sha256="0ywgrcplhspc0x5fniw52xqz20y7j9mwgy4ky8lv3vii659mr52m"; depends=[mvtnorm numDeriv Rcpp RcppGSL]; broken = true; }; + mkde = derive2 { name="mkde"; version="0.1"; sha256="04v84arpnmjrkk88ffphnhkz32x7y0dypk75jfmbbgcgv59xlglv"; depends=[raster Rcpp sp]; broken = true; }; mlbstatsR = derive2 { name="mlbstatsR"; version="0.1.0.3"; sha256="0rcjfbi383rdk2fyrw47ni0jrzp7yj2sr8xzxvk3gmh321i3pn5d"; depends=[dplyr ggplot2 ggtext glue httr janitor jsonlite purrr rvest stringr tibble tidyr xml2]; broken = true; }; mleap = derive2 { name="mleap"; version="1.1.0"; sha256="0s15srbnk8fs5vj12gdszpg6g563q17v42fng2rydkgi4q7m2vj6"; depends=[digest fs jsonlite purrr rJava sparklyr tibble]; broken = true; }; mlgt = derive2 { name="mlgt"; version="0.16"; sha256="1nvdq6mvgr39ikkf73aggsb6pmbw132injj8fdkr8hgcmwm6lgd9"; depends=[seqinr]; broken = true; }; - mlmts = derive2 { name="mlmts"; version="1.0.0"; sha256="0vgrwcbhj4a3vlf9bddzfnicc6bsq0q2ryilq7kdv4yn58d5ggxx"; depends=[AID caret ClusterR complexplus DescTools dtw e1071 evolqg fda_usc forecast freqdom geigen ggplot2 MASS Matrix MTS multiwave pracma pspline psych quantspec ranger Rdpack Rfast TSA TSclust TSdist tseries tseriesChaos tsfeatures waveslim]; broken = true; }; + mlica2 = derive2 { name="mlica2"; version="2.1"; sha256="0c3m1zd9x99n6lw12hfzmd59355z51xa8rhg1h7qwfn9p86r826f"; depends=[]; broken = true; }; + mmm2 = derive2 { name="mmm2"; version="1.2"; sha256="1h9pn5s3jjs4bydrr1qysjb4hv7vs4h3m7mvi22ggs2dzyz3b298"; depends=[gee]; broken = true; }; mmpca = derive2 { name="mmpca"; version="2.0.1"; sha256="05vir7hjv5dccfcizyn5n6qxx2p53111if16l44a7ifg5k599xj9"; depends=[digest gsl Rcpp RcppEigen]; broken = true; }; + mnlfa = derive2 { name="mnlfa"; version="0.1-53"; sha256="1hw4m6zpb2322041aizam1l71zxz3i7siawid8npig8v9dhkaqrf"; depends=[CDM Rcpp RcppArmadillo]; broken = true; }; mnlogit = derive2 { name="mnlogit"; version="1.2.6"; sha256="0dfwpkl8g7ap5xr48smiv8vdbamd2r1liy9nwpsn0kcsr9cj65n9"; depends=[Formula lmtest mlogit]; broken = true; }; mobsim = derive2 { name="mobsim"; version="0.2.0"; sha256="0an8j5kj0cs1bjz9kwzwc54hm0zaiz5rsaw78ihldw0mx5n175gn"; depends=[Rcpp sads vegan]; broken = true; }; modcmfitr = derive2 { name="modcmfitr"; version="0.1.0"; sha256="1d6fi7pc10w2a97h1prhkg5cvzmxjp11c5bwrz90zry0m8anwjyh"; depends=[gtools nloptr]; broken = true; }; + modelfree = derive2 { name="modelfree"; version="1.1-1"; sha256="0ammka2wxx90z31zfzypw9dk5n118l0vxhykxbx6srfig2vdyn82"; depends=[PolynomF SparseM]; broken = true; }; + modiscloud = derive2 { name="modiscloud"; version="0.14"; sha256="0vwhfp50yb21xkanvzk983vk0laflv60kj1ybx3fydfljwqx0rwj"; depends=[date raster rgdal sfsmisc sp]; broken = true; }; + moezipfR = derive2 { name="moezipfR"; version="1.0.2"; sha256="0sfl1c7cvm1milcglcvz9lyvgricsdm7shx0jxyn50y7xz0padww"; depends=[tolerance VGAM]; broken = true; }; mosaic_find = derive2 { name="mosaic.find"; version="0.1.2"; sha256="1fzgksh8sp701qjfrvjl2bg967qjkjpilxsfkrazhw71cgmzjgjl"; depends=[minpack_lm]; broken = true; }; + mozzie = derive2 { name="mozzie"; version="0.1.0"; sha256="09dwrv4r0hi19gzi1vpif3q4wlbny9h22430g1hhv0wkqs86mhmw"; depends=[]; broken = true; }; mpa = derive2 { name="mpa"; version="0.7.3"; sha256="0mhnsbgr77fkn957zfiw8skyvgd084rja1y4wk5zf08q5xjs2zvn"; depends=[network]; broken = true; }; + mpbart = derive2 { name="mpbart"; version="0.2"; sha256="1145n0lxmm0kjm2lc358d79hqws48crj17pjvmchl1pbfd7zi4r8"; depends=[bayesm cvTools mlbench mlogit]; broken = true; }; + msSurv = derive2 { name="msSurv"; version="1.2-2"; sha256="02qm3mq17d2yj5mbz6gapd3zfi1wmiad5hpyimcb39impk43n2hf"; depends=[class graph lattice]; broken = true; }; + msda = derive2 { name="msda"; version="1.0.2"; sha256="05khpa5qasnngn6yvk87gv5262plqpw4knb6hzgy52w401k0y80r"; depends=[MASS Matrix]; broken = true; }; mssqlR = derive2 { name="mssqlR"; version="1.0.0"; sha256="0qdnm7cx9cg14vfcnkmcjqr1jpxsw8xlrbnxldvzz44mzv2n878l"; depends=[magrittr RODBC]; broken = true; }; multDM = derive2 { name="multDM"; version="1.1.3"; sha256="16bvr62lxmrq79z856iigwz5cjhk327x4hhd0cg3adgabqcz04yp"; depends=[MTS]; broken = true; }; multdyn = derive2 { name="multdyn"; version="1.6"; sha256="06yab2lmxp7lc7zjk8n194mn5vza0yjbp276iair3ry35my4h3v8"; depends=[data_table ggplot2 Rcpp RcppArmadillo reshape2]; broken = true; }; multifluo = derive2 { name="multifluo"; version="1.1"; sha256="1hnh1gj6lfnh2fn0v064bszydgsr6p9f7p8yxyw5rdxfrxymiw09"; depends=[agricolae ellipse imager]; broken = true; }; multinbmod = derive2 { name="multinbmod"; version="1.0"; sha256="1c4jyzlcjkqdafj9b6hrqp6zs33q6qnp3wb3d7ldlij7ns9fhg71"; depends=[]; broken = true; }; + multinomRob = derive2 { name="multinomRob"; version="1.8-6.1"; sha256="1fdjfk77a79fy7jczhpd2jlbyj6dyscl1w95g64jwxiq4hsix9s6"; depends=[MASS mvtnorm rgenoud]; broken = true; }; + multiviewtest = derive2 { name="multiviewtest"; version="2.0.1"; sha256="1jnb9l9nqnciczgxy9k7fq66rycbq0gr4sjdc2ck274jisj5bbaq"; depends=[doParallel foreach irlba Matrix matrixStats mclust randnet]; broken = true; }; + muma = derive2 { name="muma"; version="1.4"; sha256="0midx3wzyvcz8rk9kvsfll3xg41pkz40si4jw2ps54ykkf9rkm99"; depends=[bitops car caTools gplots gtools mvtnorm pcaPP pdist pls robustbase rrcov]; broken = true; }; + mut = derive2 { name="mut"; version="1.1"; sha256="0v0vviarsmaiap3fa82ia01cblana65fd3cbj7jkd3aral6pm6yz"; depends=[expm Familias IBDsim paramlink]; broken = true; }; mvcluster = derive2 { name="mvcluster"; version="1.0"; sha256="0yfl31scdgsiljvpv1yxc5bwwzr6kbhpjwqh2kql7xf0m0hc1pr4"; depends=[Rcpp RcppArmadillo]; broken = true; }; + mvdalab = derive2 { name="mvdalab"; version="1.6"; sha256="0i4hhm9bkp13j8cy6fspdn619d00jh615njwr49rwzgjyj418k6l"; depends=[car dummies ggplot2 MASS moments penalized plyr reshape2 sn]; broken = true; }; + mvprpb = derive2 { name="mvprpb"; version="1.0.4"; sha256="1kcjynz9s7vrvcgjb9sbqv7g50yiymbpkpg6ci34wznd33f7nrxm"; depends=[]; broken = true; }; mvst = derive2 { name="mvst"; version="1.1.0"; sha256="03q0kdychsmn4wcn50b6dqhxn4f2mjvrr5rac942xdv75w8qklc9"; depends=[MCMCpack mnormt mvtnorm]; broken = true; }; - mwa = derive2 { name="mwa"; version="0.4.3"; sha256="100d3c1070ir64iv848kws5fna141gcq5p66ip873cr632a042qs"; depends=[cem MASS rJava]; broken = true; }; mwaved = derive2 { name="mwaved"; version="1.1.8"; sha256="092sqd9harx289bgghw9x495llzhab0vkgkjka5jhi4ad1rfk3vh"; depends=[Rcpp shiny]; broken = true; }; + myepisodes = derive2 { name="myepisodes"; version="1.1.1"; sha256="0xk9bwgpl630nhc8qa2pc0rwqbqk3haxnp78gfxq6sn6z7i44k1p"; depends=[XML]; broken = true; }; + mztwinreg = derive2 { name="mztwinreg"; version="1.0-1"; sha256="1rg6ikaqdrc7q44s3r3km8h45prnvcpzpxd7nxbmh209iz9j19ai"; depends=[mclogit rms]; broken = true; }; nCal = derive2 { name="nCal"; version="2021.9-12"; sha256="133dpy2rp8sabwdlk0wjxs9rzixzcja73im94qaw26z5xsnaydhf"; depends=[drc gdata gWidgets2 kyotil]; broken = true; }; namer = derive2 { name="namer"; version="0.1.5"; sha256="1687x6rc46bp2bmqkixzry5cc7lxjqwjk8ngrbg2fk7mzb4pwvnq"; depends=[dplyr fs glue magrittr purrr rstudioapi tibble]; broken = true; }; + ncg = derive2 { name="ncg"; version="0.1.1"; sha256="1jzkzp61cc5jxmdnl867lcrjjm7y2iw9imzprbd098p1j3w8fvj7"; depends=[]; broken = true; }; nearfar = derive2 { name="nearfar"; version="1.2"; sha256="116rq797a5fascirz8xg465fywjf40j1k5czryvqzpik0if0w00r"; depends=[car GenSA MASS nbpMatching]; broken = true; }; + netcom = derive2 { name="netcom"; version="2.1.5"; sha256="1lg2b3lhnhiqqb06b31vbsbfbk9hifbl5dvp45flf83vn3g21ci0"; depends=[clue doParallel dplyr expm foreach GenSA ggfortify ggplot2 ggraph igraph magrittr Matrix optimx pdist pracma reshape2 rlang tibble vegan]; broken = true; }; + networkTomography = derive2 { name="networkTomography"; version="0.3"; sha256="1hd7av231zz0d2f9ql5p6c95k7dj62hp0shdfshmyfjh8900amw7"; depends=[coda igraph KFAS limSolve plyr Rglpk]; broken = true; }; + networksis = derive2 { name="networksis"; version="2.1-3"; sha256="1kvil3qs7xd94ak9jgvj1nss55gjg0y7d35zmass9h1hjkcrq7bg"; depends=[network]; broken = true; }; + neurobase = derive2 { name="neurobase"; version="1.32.1"; sha256="0lsgqbdpi2nrgrfnw1hzgkjks625cz0s71b7810sh3f7w78mk43k"; depends=[abind matrixStats oro_nifti R_utils RNifti]; broken = true; }; + neuronorm = derive2 { name="neuronorm"; version="1.0.1"; sha256="09sd73a5xr1id37b3rkmv8v4f67wjwac9k3j1q5ssgkpq92kg50k"; depends=[fslr knitr neurobase oro_nifti]; broken = true; }; + nitrcbot = derive2 { name="nitrcbot"; version="1.2"; sha256="0lainbw9j5aj9s824afpxdjl3q2f728jfpdfji7kpi9hdg8jixhx"; depends=[dplyr httr jsonlite RCurl]; broken = true; }; + nlirms = derive2 { name="nlirms"; version="3.4.4"; sha256="1njyfip377a0f6hf9y32s077b4jv4h8ydbjgnl68yfypxbfn2xyx"; depends=[gridExtra gtable]; broken = true; }; + nlmeODE = derive2 { name="nlmeODE"; version="1.1"; sha256="1zp1p98mzbfxidl87yrj2i9m21zlfp622dfnmyg8f2pyijhhn0y2"; depends=[deSolve lattice nlme]; broken = true; }; + nlsrk = derive2 { name="nlsrk"; version="1.1"; sha256="0yqcsz5pdhqsrd86g0yx8bdac13fbmvg89phj3v4qvla2jfznjba"; depends=[]; broken = true; }; + nnetpredint = derive2 { name="nnetpredint"; version="1.2"; sha256="1c6s9wm6vhylwv4xhp2hkllw18zj8hdr17ls9vlxm9qs3wx1v48w"; depends=[RSNNS]; broken = true; }; nontarget = derive2 { name="nontarget"; version="1.9"; sha256="0ndqcr73sja5ks5kdahhakpz9lw3rp26imklagdv4f5agqnb608s"; depends=[enviPat mgcv nontargetData]; broken = true; }; nontargetData = derive2 { name="nontargetData"; version="1.1"; sha256="07cdbpmn64sg4jfhljdcx503d55azyz58x7nkji044z3jmdryzqw"; depends=[]; broken = true; }; + normwhn_test = derive2 { name="normwhn.test"; version="1.0"; sha256="1kr45bfydk40hgdg24i2f28cdaw65hg9gmsgv4lsvvr2m3r74vi6"; depends=[]; broken = true; }; + nos = derive2 { name="nos"; version="1.1.0"; sha256="0hbncama8cx8q0rc56bil38fbj33z49v4d6zdkvxs6wgmmglnrfs"; depends=[dplyr gmp]; broken = true; }; + notifyR = derive2 { name="notifyR"; version="1.02"; sha256="0jx76ic5r1crcgg0n0yqnka0gwniflfxakh838a98j9wb11wi6h5"; depends=[RCurl rjson]; broken = true; }; ntwk = derive2 { name="ntwk"; version="1.0.0"; sha256="1c12c3pq992f02z3ikx17zv2djq9d9ly232ha0j5jswsksqzx024"; depends=[assertthat copCAR ghyp Matrix mvtnorm pracma zoo]; broken = true; }; + obliqueRF = derive2 { name="obliqueRF"; version="0.3"; sha256="1bwlgv820mmpc6vg26bsdlfy2p78586i3y42hkzbw3z1fmwq3pz5"; depends=[e1071 mda pls ROCR]; broken = true; }; oc = derive2 { name="oc"; version="1.2"; sha256="0cw1gvz6gk8j718zmywqp03h9cnzn132nwbv45gr00xg2s9h7dk7"; depends=[pscl]; broken = true; }; - onlineforecast = derive2 { name="onlineforecast"; version="1.0.0"; sha256="191rqfz9y6hpgb21k38v3051pv9w4hm35kyg2znv864c5s7bk5ma"; depends=[digest pbs R6 Rcpp RcppArmadillo]; broken = true; }; + oncomodel = derive2 { name="oncomodel"; version="1.0"; sha256="1jyyq9znffiv7rg26mjldbwc5yi2f4f8npsd2ykhxyacb3g96fp1"; depends=[ade4]; broken = true; }; + onlineVAR = derive2 { name="onlineVAR"; version="0.1-1"; sha256="01z2d91mbdjvwwiqjq1dbqp50jbc9v6d7nw4gs7d1abhsqyiqa13"; depends=[lattice]; broken = true; }; + onls = derive2 { name="onls"; version="0.1-1"; sha256="0m7pnlzkqwzi6jncjzxzfvznipd4wg03zd9fc0ymwm9jvhm4p14g"; depends=[minpack_lm]; broken = true; }; + optAUC = derive2 { name="optAUC"; version="1.0"; sha256="0j1llzqa3n7kqw3i5bb7284z0hi6s5jbjfl9zap0l7xf6hg4x1dn"; depends=[MASS]; broken = true; }; optband = derive2 { name="optband"; version="0.2.1"; sha256="1rv4r7h7x3xipav917cz9bcr6nqjzbinfrqxv8mcls9gdl9ha3y9"; depends=[LambertW]; broken = true; }; + optiRum = derive2 { name="optiRum"; version="0.40.1"; sha256="1kl9mzh53pwhrxbn89dsjjpfji7k8vmysscd1qd9sw7vqdan8g6x"; depends=[AUC data_table ggplot2 knitr plyr scales stringr XML]; broken = true; }; orQA = derive2 { name="orQA"; version="0.2.1"; sha256="0vivjrpcbql42y078gi91kfpfdpv73j23jkiv8fpazzwzdi8ydqq"; depends=[genefilter gtools nlme Rcpp]; broken = true; }; + orderbook = derive2 { name="orderbook"; version="1.03"; sha256="0dlvjrzdhhh8js4g1lvxs46q7fdxfxavxnb4nj6xlwca75i51675"; depends=[hash lattice]; broken = true; }; + org = derive2 { name="org"; version="2019.4.2"; sha256="0jrnr22slgzwsdb4a1jb1l878smhvfb680cgmgb3a88jqj4jfscl"; depends=[]; broken = true; }; + osmgeosample = derive2 { name="osmgeosample"; version="0.1"; sha256="1vcdisf147mcdqkc35czcphjh6rhaix9vy6l5inknaarmmajri3x"; depends=[dplyr geoR mapview nngeo osmdata pdist processx qpdf Rcpp rgdal sf sp splancs tibble]; broken = true; }; + ospsuite_utils = derive2 { name="ospsuite.utils"; version="1.2.0"; sha256="16gcqnkqz0nz7mhgbnji3p1k2vv43jypx2xbcz4i4d8v1368akly"; depends=[R6]; broken = true; }; + otvPlots = derive2 { name="otvPlots"; version="0.2.1"; sha256="0fjx0kl9y77mazwy7lg4mxc9sg8ysvvbl4h3k6bvfpnjm5x62hff"; depends=[data_table ggplot2 gridExtra Hmisc moments quantreg scales stringi]; broken = true; }; ouxy = derive2 { name="ouxy"; version="2.1"; sha256="0mdjxg7wm68882hbwl0gg15dld6f90xyf0s6hk2z90r34bvyky0i"; depends=[abc adephylo ape coda EasyABC geiger maps MCMCpack nlme phytools Sim_DiffProc TreeSim]; broken = true; }; oxcgrt = derive2 { name="oxcgrt"; version="0.1.0"; sha256="006kdggqdy7nkllln5p7fsapmmn5wlampyw2ifc4ls9jbz0p5h16"; depends=[countrycode dplyr jsonlite magrittr stringr tibble tidyr]; broken = true; }; + p2distance = derive2 { name="p2distance"; version="1.0.1"; sha256="1ims8i5z5k97kjpdysgx8g7lgvnvf7amahcrssw7bk38bvbxawni"; depends=[]; broken = true; }; + pacbpred = derive2 { name="pacbpred"; version="0.92.2"; sha256="13p405vh9rf1r5idxl5payc85vwlzcd87wm15163vc9gmil1ncsf"; depends=[]; broken = true; }; packClassic = derive2 { name="packClassic"; version="0.5.2"; sha256="04a1sg9vx3r0sq54q9kj0kpahp6my246jy3bivgy09g5fjk0dmkj"; depends=[]; broken = true; }; + packS4 = derive2 { name="packS4"; version="0.9.3"; sha256="0kkh4lfdbr2ydyfpymwrdkms1d4mj8430p6vxvj5wrgl4vh85gwd"; depends=[codetools]; broken = true; }; + pairedCI = derive2 { name="pairedCI"; version="0.5-4"; sha256="03wf526n3bbr2ai44zwrdhbfx99pxq1nbng9wsbndrdg2ji4dar2"; depends=[]; broken = true; }; pairheatmap = derive2 { name="pairheatmap"; version="1.0.1"; sha256="1awmqr5n9gbqxadkblpxwcjl9hm73019bwwfwy1f006jpn050d6l"; depends=[]; broken = true; }; pairwiseComparisons = derive2 { name="pairwiseComparisons"; version="3.1.6"; sha256="0aiq8gr33pr5lia6cf6ak7zy5z81am5j5a0py0a2m9ljgmsgmn4s"; depends=[BayesFactor dplyr insight ipmisc parameters PMCMRplus purrr rlang WRS2]; broken = true; }; + paleoMAS = derive2 { name="paleoMAS"; version="2.0-1"; sha256="1hhb5wbj4m3ch8wnvd1zkl5bk6wa9nl6jl1dhm4z6yqkh29yn9z6"; depends=[lattice MASS vegan]; broken = true; }; panelAR = derive2 { name="panelAR"; version="0.1"; sha256="1ka2rbl9gs65xh2y2m4aqwh5qj4szibjy101hqfmza9wmdh25gpq"; depends=[car]; broken = true; }; + papayar = derive2 { name="papayar"; version="1.0"; sha256="11vkjhazfwfixsr6dba5jrcsr3r3mqgvj5s070b4gp70d6k1z8s5"; depends=[htmltools neurobase oro_nifti servr]; broken = true; }; + parboost = derive2 { name="parboost"; version="0.1.4"; sha256="087b4as0w8bckwqpisq9mllvm523vlxmld3irrms13la23z6rjvf"; depends=[caret doParallel glmnet iterators mboost party plyr]; broken = true; }; + parcoords = derive2 { name="parcoords"; version="1.0.0"; sha256="15w0g789a2igagfrgv1978ib4ipxpfkid5jpj4q344mpdvgp6ip2"; depends=[crosstalk htmlwidgets]; broken = true; }; partialAR = derive2 { name="partialAR"; version="1.0.12"; sha256="0fv1ffgqdbl04b4cmfmvzwah8ms9cxx3dsdralkk92bxxhybcjsl"; depends=[data_table ggplot2 KFAS MASS plot3D Rcpp tseries urca zoo]; broken = true; }; partialCI = derive2 { name="partialCI"; version="1.2.0"; sha256="0hi936yg4g5bg61ix2i68f8q4c5nvvshl2728ynz1rl970qfcrp7"; depends=[data_table ggplot2 glmnet KFAS MASS partialAR Rcpp TTR zoo]; broken = true; }; + pathlibr = derive2 { name="pathlibr"; version="0.1.0"; sha256="0z8iz765fi1s2770p7dwwv2anihfw86kb5dwg081wb6474wiq6v8"; depends=[glue logging magrittr purrr R6 rlang]; broken = true; }; + pathwayTMB = derive2 { name="pathwayTMB"; version="0.1.1"; sha256="1y5c779895mvbllykz8j4sgn2n0k37g0wlby404ma9n1hfnbh37v"; depends=[BiocGenerics caret clusterProfiler data_table GenomicFeatures glmnet maftools pROC purrr randomForest RColorBrewer survival survminer]; broken = true; }; pbdBASE = derive2 { name="pbdBASE"; version="0.5-3"; sha256="1f90bk1mp1s03177b9g5w5ni77jzrzc1pl3bjx0w0fjbjs1myn79"; depends=[pbdMPI pbdSLAP]; broken = true; }; pbdPROF = derive2 { name="pbdPROF"; version="0.4-0"; sha256="174jwrkvw5qz1430y6id01w1czlw45j1yw8a8dyw36knrmvmdz10"; depends=[]; broken = true; }; pbdRPC = derive2 { name="pbdRPC"; version="0.2-1"; sha256="1pz71zfs9qw96dj3h5mrm734vbbi4drlv9hrw91dbzm3a7jsxg4q"; depends=[]; broken = true; }; + pds3 = derive2 { name="pds3"; version="0.5.0"; sha256="1hipi4ygk30khrrslxq3m9qdichazhrl34k444shs7gi6wjx9ilr"; depends=[rly]; broken = true; }; + peakPick = derive2 { name="peakPick"; version="0.11"; sha256="1zf7ff9arm4hkdxrfhb0p8p7npd51icy773g2raaqsfys825xwhm"; depends=[matrixStats]; broken = true; }; pedometrics = derive2 { name="pedometrics"; version="0.7.0"; sha256="0rqldc67yrcg16i5q9wrmfmh3lw3qrfdxwdb4mxkjxx18v4fv737"; depends=[lattice latticeExtra Rcpp]; broken = true; }; penalizedclr = derive2 { name="penalizedclr"; version="0.1.0"; sha256="0ka27azfdj4wa1p628b99pkrfjy1x8yjyd3d5g2v8mbsfg3j3bwg"; depends=[clogitL1 penalized survival tidyverse]; broken = true; }; permGPU = derive2 { name="permGPU"; version="0.15"; sha256="1bxydc5dw7ka45k6ban35d5xb1dw9yq9480qns8b39cc0x3acmhc"; depends=[Biobase foreach RUnit survival]; broken = true; }; + personograph = derive2 { name="personograph"; version="0.1.3"; sha256="07lrlbw4222l1d5rwn0hfqliyk8sqjf6ipz4n2zwcbk113bb8sy7"; depends=[grImport]; broken = true; }; + phenability = derive2 { name="phenability"; version="2.0"; sha256="0can8qgdpfr4h6jfg23cnwh7hhmwv6538wg2jla9w138la7rhpd1"; depends=[calibrate]; broken = true; }; photosynthesis = derive2 { name="photosynthesis"; version="2.0.1"; sha256="0drbic4sdx841pzcqvi0gkny7qrnzixlc0wsr6m0llh7pfyl99s6"; depends=[checkmate crayon dplyr furrr future ggplot2 glue gunit magrittr minpack_lm nlme pkgnet purrr rlang stringr tealeaves tidyselect units]; broken = true; }; + phyloland = derive2 { name="phyloland"; version="1.3"; sha256="10g40m6n2s4qvnzlqcwpy3k0j7bxdp79f586jj910b8p00ymrksp"; depends=[ape]; broken = true; }; physx = derive2 { name="physx"; version="1.0"; sha256="1b6bx08jzfg4pxicawkn013bqrvqkp19pigxl3iwjrqclvi8mx73"; depends=[celestial cubature data_table docore MASS pracma Rcpp]; broken = true; }; + pinbasic = derive2 { name="pinbasic"; version="1.2.2"; sha256="0mcw68wrixz2jf62nfifdgg8bnp4h1p3byivz28wi61blj8iaa75"; depends=[fastcluster ggplot2 lubridate Rcpp reshape2 scales]; broken = true; }; + planar = derive2 { name="planar"; version="1.6"; sha256="0x5xdb2afpc1w8s217hy765mz938kg5b5j7vzqzhlsh2dzdjccpj"; depends=[cubature dielectric ggplot2 plyr Rcpp RcppArmadillo reshape2 statmod]; broken = true; }; plmm = derive2 { name="plmm"; version="0.1-1"; sha256="1dfxd1mqqjy2mf7qc6mh4wx5ya9q8fkqgrf01apisb66xxx5zya7"; depends=[Formula nlme sm]; broken = true; }; + plotKML = derive2 { name="plotKML"; version="0.8-2"; sha256="1hdyvff76k40lrzw4vq8azdpxzxxabgkgxixkqvnw5cda362nyfh"; depends=[aqp classInt colorRamps colorspace dismo gstat landmap pixmap plyr raster RColorBrewer rgdal scales sf sp spacetime stars stringr XML zoo]; broken = true; }; + plsr = derive2 { name="plsr"; version="0.0.1"; sha256="0l413m49zjpb35v0zw8dlxn53nh7fghinbmwfmldl3jgdvay2s7x"; depends=[boot ggplot2 reshape2 shiny]; broken = true; }; pm4py = derive2 { name="pm4py"; version="1.2.7"; sha256="11xbsmsc9pxd98fy28l3nxzhb6c2pwvh1gmm34jnqn0rjbpb2n9i"; depends=[bupaR petrinetR purrr reticulate stringr]; broken = true; }; + pmcgd = derive2 { name="pmcgd"; version="1.1"; sha256="1pybzvyjmzpcnxrjsas06diy3x83i1r5491s6ccyr63l56hs55d5"; depends=[mixture mnormt]; broken = true; }; pmdplyr = derive2 { name="pmdplyr"; version="0.3.3"; sha256="1grnqqydi84hnig1522lv4xbh9ds32wnq7sha7jn1q4186wlz1qa"; depends=[dplyr lubridate magrittr pillar rlang tibble tidyr tidyselect vctrs]; broken = true; }; pmpp = derive2 { name="pmpp"; version="0.1.1"; sha256="1srmkih6zsyf8yf1f045xy1afcz0if6nf1ncslgrq6rgm7330lkw"; depends=[data_table dplyr ggplot2 magrittr MASS Matrix minqa moments plm pracma]; broken = true; }; + pnmtrem = derive2 { name="pnmtrem"; version="1.3"; sha256="0053gg368sdpcw2qzydpq0c5v2cxdlwgf5k68cbw0yx41csjgvz0"; depends=[MASS]; broken = true; }; pnn = derive2 { name="pnn"; version="1.0.1"; sha256="1s6ib60sbdas4720hrsr5lsszsa474kfblqcalsb56c84gkl42ka"; depends=[]; broken = true; }; podr = derive2 { name="podr"; version="0.0.5"; sha256="135nq0dw1x6ngf6mxy3yds3xsxhaf5rnv1cmhavlrklhdfygc0a4"; depends=[assertthat DBI dplyr lubridate magrittr odbc plogr RPostgres rstudioapi shiny stringr tibble]; broken = true; }; polyPK = derive2 { name="polyPK"; version="3.1.0"; sha256="0cb83sq8iz4swr73vwhh8n4k62p6321nsy1sz5fba0wiicycxf55"; depends=[circlize corrplot gplots Hmisc impute imputeLCMD mixOmics pcaMethods pkr plyr ropls sqldf xlsx]; broken = true; }; polyglot = derive2 { name="polyglot"; version="0.3.0"; sha256="1mmmdqaq882qys41lmm009ncg9s9h5x1q8psv0v3pwpar0d7vgff"; depends=[magick pins]; broken = true; }; + popKorn = derive2 { name="popKorn"; version="0.3-0"; sha256="1zcl6ms7ghbcjyjgfg35h37ma8nspg15rk2ik82yalqlzxjf7kxw"; depends=[boot]; broken = true; }; + popRF = derive2 { name="popRF"; version="1.0.0"; sha256="0w3w1ffyy5b8glviib7ryjqzhmfp5aw6am3z8qpvis6l745p7vgh"; depends=[doParallel foreach gdalUtils plyr quantregForest randomForest raster]; broken = true; }; + powerAnalysis = derive2 { name="powerAnalysis"; version="0.2.1"; sha256="0cma4v402n6wcb2gy9g1ymydzh8vimy9nfrrn8xhnjsf7x6jh215"; depends=[]; broken = true; }; pragma = derive2 { name="pragma"; version="0.1.3"; sha256="1n30a346pph4d8cj4p4qx2l6fnwhkxa8yxdisx47pix376ljpjfx"; depends=[]; broken = true; }; praktikum = derive2 { name="praktikum"; version="0.1"; sha256="0kkydgglvqw371fxh46fi86fmdndhwq1n8qj0ynbh2gz1cn86aw1"; depends=[]; broken = true; }; predmixcor = derive2 { name="predmixcor"; version="1.1-1"; sha256="0v99as0dzn0lqnbbzycq9j885rgsa1cy4qgbya37bbjd01b3pykd"; depends=[]; broken = true; }; + prob = derive2 { name="prob"; version="1.0-1"; sha256="05qcrsl790hn7p3ap4zj5i1b1sf674wvvrh42lyb7a0nsc09iq9n"; depends=[combinat fAsianOptions]; broken = true; }; + probFDA = derive2 { name="probFDA"; version="1.0.1"; sha256="093k50kyady54rkrz0n9x9z98z5ws36phlj42j25yip7pzhfd6sv"; depends=[MASS]; broken = true; }; + probemod = derive2 { name="probemod"; version="0.2.1"; sha256="1cgjr03amssc9rng8ky4w3abhhijj0d2byzm118dfdjzrgmnrf9g"; depends=[]; broken = true; }; + prognosticROC = derive2 { name="prognosticROC"; version="0.7"; sha256="0lscsyll41hpfzihdavygdzqw9xxjp48dmy4i17qsx5h01jl1h4i"; depends=[survival]; broken = true; }; + proportion = derive2 { name="proportion"; version="2.0.0"; sha256="0a71f6hz6blb7550m9x0di84vp51yjhnn952301rwlrh3axf6dbr"; depends=[ggplot2 TeachingDemos]; broken = true; }; + proteomicdesign = derive2 { name="proteomicdesign"; version="2.0"; sha256="01s47pgwxy4xx10f3qmbfv59gbaj0qw017kpkpsn33s8w7ad63r0"; depends=[MASS]; broken = true; }; + protoclass = derive2 { name="protoclass"; version="1.0"; sha256="17d2m6r1shgb47v8mwdg1a7f5h29m5l7f5m0nsmv0xc90s9cpvk8"; depends=[class]; broken = true; }; provSummarizeR = derive2 { name="provSummarizeR"; version="1.4.2"; sha256="1pfnrvgqzpdhrsyh0y75idwj13zgcdj7ql6frpjmc0f5cggv7q1q"; depends=[dplyr provParseR]; broken = true; }; + pse = derive2 { name="pse"; version="0.4.7"; sha256="0kigfzsvx3gw7jwym4f19dydwwarwxgmha7hpy54gg0zzi4k9icl"; depends=[boot Hmisc]; broken = true; }; + pssm = derive2 { name="pssm"; version="1.1"; sha256="0r3d1mzc7bcz238lqq4y518400m2dqm5a1fb9gkfiari1ax099lv"; depends=[abind MASS MHadaptive numDeriv]; broken = true; }; psychometric = derive2 { name="psychometric"; version="2.2"; sha256="1b7cx6icixh8k3bv60fqxjjks23qn09vlcimqfv2x3m3nkf8p1s9"; depends=[multilevel nlme]; broken = true; }; psyosphere = derive2 { name="psyosphere"; version="0.1.6"; sha256="1hcas3jk2n11lyw1ysmci0sysxf7qg9h2msqqg7q9nqp5gbf90np"; depends=[geosphere ggplot2 Hmisc lubridate plyr rgdal RgoogleMaps sp]; broken = true; }; + pvsR = derive2 { name="pvsR"; version="0.3"; sha256="1ijmqlcsc8z0aphdd3j37ci8yqsy50wnr2fwn7h8fxbyd12ax2nj"; depends=[httr nnet XML]; broken = true; }; + qLearn = derive2 { name="qLearn"; version="1.0"; sha256="1ilxmgazm8gjz8c1hhbp4fccibnvnalxrag8b0rn081zsqmhf094"; depends=[]; broken = true; }; + qmix = derive2 { name="qmix"; version="0.1.2.0"; sha256="172lhvj7adphxq9gws2i9lysc9bj1wpk60f4hf2h5sisnli15v0x"; depends=[BH Formula Rcpp RcppEigen rstan StanHeaders]; broken = true; }; qoma_smuggler = derive2 { name="qoma.smuggler"; version="0.0.1"; sha256="03p9i0kr6i3adpb9lcszcmdr9p26nfy7f8hw2sbydazglaw4hscr"; depends=[lubridate rhli tibble]; broken = true; }; - quantdr = derive2 { name="quantdr"; version="1.2.1"; sha256="04m75lv8fsz78bvq65rgxmrqgr3bdwmhbqy6ddi1h5av8c131qrq"; depends=[dr KernSmooth mvtnorm quantreg]; broken = true; }; + quantable = derive2 { name="quantable"; version="0.3.6"; sha256="15q4phc2j7aihl8f4qzpdwxcvshq2cfzkfcxc8k4qypsxk9a00sb"; depends=[caret dplyr e1071 ggplot2 ggrepel gplots Matrix plyr pROC RColorBrewer readr reshape2 rlang scales stringr tibble tidyr]; broken = true; }; + r511 = derive2 { name="r511"; version="0.1.1"; sha256="1njsnjf0746cv6x7fznq4cg556fczqcfawwb869r3w9zv0zj1iy9"; depends=[assertthat dplyr httr tibble xml2]; broken = true; }; rAvis = derive2 { name="rAvis"; version="0.1.4"; sha256="0svplnrn8rrr59v04nr1pz7d5r4dr1kdl0bd3kg8c3azxv47mxbp"; depends=[gdata maptools raster RCurl rgdal scales scrapeR sp stringr XML]; broken = true; }; rDotNet = derive2 { name="rDotNet"; version="0.9.1"; sha256="18cd5373pdfi1x958llb4cgjqdi1fb7h7m5nkdwcd4xw9hxhinzd"; depends=[Rcpp testthat]; broken = true; }; + rFDSN = derive2 { name="rFDSN"; version="0.0.0"; sha256="1ffiqpdzy4ipy2aci22zkih4373ifkjkpvsrza8awhyf9fwqwdsl"; depends=[XML]; broken = true; }; rGEDI = derive2 { name="rGEDI"; version="0.1.11"; sha256="0fkvy4p82jyfbbfymkfbrdyh13hk6a6wghk2myb64p5nhz8kv7iz"; depends=[bit64 curl data_table fs getPass ggplot2 hdf5r jsonlite lazyeval raster RColorBrewer rgdal rgeos sp]; broken = true; }; rJython = derive2 { name="rJython"; version="0.0-4"; sha256="13fpcw37cca738v9idqgi3gv9avfkfwfacxj54p2c4wyg46ghnah"; depends=[rJava rjson]; broken = true; }; + rKIN = derive2 { name="rKIN"; version="0.1"; sha256="1j6fdi5h869q4d1hq6ha6qyhisa0zk2qmhjrc4ahl9991d680dyn"; depends=[ggplot2 maptools MASS rgeos sp]; broken = true; }; rModeling = derive2 { name="rModeling"; version="0.0.3"; sha256="0xrjxayp59f31wwcqqkzs5my2j2lpbv1f4pp709fmqxz02vbdzhv"; depends=[caret e1071 MASS]; broken = true; }; radix = derive2 { name="radix"; version="0.6"; sha256="0290n0yax8649srdjbq4439h0d9f6jsmxayyhp86igcnszcxilnb"; depends=[base64enc bookdown digest downloader htmltools jsonlite knitr lubridate mime png progress rmarkdown rprojroot rstudioapi stringr whisker xfun xml2 yaml]; broken = true; }; randaes = derive2 { name="randaes"; version="0.3"; sha256="14803argy0xdd8mpn4v67gbp90qi2is4x6na9zw7i9pm504xji1x"; depends=[]; broken = true; }; + randnet = derive2 { name="randnet"; version="0.5"; sha256="131bkfzxjd3x02dj6wc2ilwpgymmm18apd4v1dd70ib4sibvir16"; depends=[AUC entropy irlba Matrix nnls poweRlaw pracma RSpectra]; broken = true; }; randomsearch = derive2 { name="randomsearch"; version="0.2.0"; sha256="0ywr4ms66p5nmq8bzy04gbvmpp0nhfyf8rvynhr2c4alqva9x3yi"; depends=[checkmate fs parallelMap ParamHelpers smoof]; broken = true; }; + raptr = derive2 { name="raptr"; version="0.1.7"; sha256="1gm99nnvn3b9xz6216masv7ji8j8vrkprzprkba5y1h22gzwxd3n"; depends=[adehabitatHR assertthat BH boot doParallel ggplot2 hypervolume ks Matrix mvtnorm PBSmapping plyr RandomFields raster RColorBrewer Rcpp RcppEigen rgdal rgeos RgoogleMaps scales shape sp]; broken = true; }; + rareGE = derive2 { name="rareGE"; version="0.1"; sha256="0v3a2wns77q923ilddicqzg0108f8kmfdnsff1n65icin7cfzsny"; depends=[MASS nlme survey]; broken = true; }; rattle_data = derive2 { name="rattle.data"; version="1.0.2"; sha256="0cnmyzvy23jc4vz521c3jg0w4165waycvy5014l5773fy19zq75c"; depends=[]; broken = true; }; rawr = derive2 { name="rawr"; version="0.1.3"; sha256="0k0x1pmxs73j6dmjg33n4hhwjwzpnhzbmmmjza6kw7hj6lfmipx4"; depends=[clipr dplyr jsonlite rvest stringr xml2]; broken = true; }; - rbounds = derive2 { name="rbounds"; version="2.1"; sha256="1h334bc37r1vbwz1b08jazsdrf6qgzpzkil9axnq5q04jf4rixs3"; depends=[Matching]; broken = true; }; + rcane = derive2 { name="rcane"; version="1.0"; sha256="0p2mgkq6fh0n289n2h19c52lnqxl05wvpmd6nwvgnjqwa4wwpa7r"; depends=[]; broken = true; }; + rccdates = derive2 { name="rccdates"; version="1.0.0"; sha256="1f87qlw62am2qy1zzrz91vmsn8axhld44gak61xa7046675hm98s"; depends=[rccmisc]; broken = true; }; + rccmisc = derive2 { name="rccmisc"; version="0.3.7"; sha256="171s2ll759xjdnx0z24ih5ix2vcp4qnmf1nf107gij6wv8k450ab"; depends=[dplyr]; broken = true; }; rcol = derive2 { name="rcol"; version="0.2.0"; sha256="1ypn5fiwhyvfnmjs2davqqhxf5pjg7f0101v40bqrv4jz563h5n1"; depends=[crul data_table glue jsonlite tibble]; broken = true; }; + rcosmo = derive2 { name="rcosmo"; version="1.1.3"; sha256="08zw2xnchima9gzjn3nchj8q1phf3cchq9340fffsac77l4am3mb"; depends=[cli entropy FITSio geoR mmap nnls Rcpp rgl tibble]; broken = true; }; rdaemon = derive2 { name="rdaemon"; version="1.0.6"; sha256="1qr6v7kgk9nd5qp96667x51331xmpp1yz1r190dgd1fqigw735s5"; depends=[base64enc futile_logger Rcpp]; broken = true; }; rdataretriever = derive2 { name="rdataretriever"; version="3.0.0"; sha256="1a01lrzn7gcxid01r0l8nnbpbryvs07z9nf43l1143w2n9bvgn24"; depends=[reticulate semver]; broken = true; }; rdtLite = derive2 { name="rdtLite"; version="1.3"; sha256="1njn6x2k03qxmb96d5sl7jz0xq5wabbixn9xy55ypw8g1k0cgmd1"; depends=[curl digest gtools jsonlite knitr provSummarizeR provViz rlang rmarkdown sessioninfo stringi XML]; broken = true; }; + regexTestR = derive2 { name="regexTestR"; version="0.1.3"; sha256="0nnp2xlrrywpi1lmj8ymsjgiqvq8777hhdgcwjq549m7whfw6lsg"; depends=[config data_table DT golem htmltools pkgload processx purrr RColorBrewer rvest shiny shinyBS shinythemes stringr tidyr xml2]; broken = true; }; regpro = derive2 { name="regpro"; version="0.1.1"; sha256="02axbq63hsqwg3q2ixr0lpsdai9q6wj57s5k1343q9m0pw90vr73"; depends=[denpro]; broken = true; }; + relMix = derive2 { name="relMix"; version="1.3.3"; sha256="03zzmsx2i7ib1mhdfk5igvr1winl9g2dfjqz2kzvcx3rl7l6hjym"; depends=[Familias gWidgets2 gWidgets2tcltk]; broken = true; }; rela = derive2 { name="rela"; version="4.1"; sha256="00ksm7zh1mpd2d5c5d823id3sxj0h3x0ccg6a40fadibvr1ay3ny"; depends=[]; broken = true; }; reliaR = derive2 { name="reliaR"; version="0.01"; sha256="000nafjp386nzd0n57hshmjzippiha6s6c4nfrcwl059dzmi088i"; depends=[]; broken = true; }; + repoRter_nih = derive2 { name="repoRter.nih"; version="0.1.1"; sha256="1qxcrn0npn5a257bxc06b06icckm2fcrwapv3xazkpc7dw6c1fqn"; depends=[assertthat crayon dplyr httr janitor jsonlite lubridate magrittr purrr tibble]; broken = true; }; + represent = derive2 { name="represent"; version="1.0"; sha256="0jvb40i6r1bh9ysfqwsj7s1g933d7z5fq9d618yjrqr6hbbqsvac"; depends=[]; broken = true; }; retrocombinator = derive2 { name="retrocombinator"; version="1.0.0"; sha256="0ci5cm9ml2gsn0n0scaahpfi8kyn6i0s3fb4mn7m9s83c0ls6xgv"; depends=[dplyr ggplot2 magrittr Rcpp rlang]; broken = true; }; + reweight = derive2 { name="reweight"; version="1.2.1"; sha256="0fv7q1zb3f4vplg3b5ykb1ydwbzmiajgd1ihrxl732ll8rkkfa4v"; depends=[]; broken = true; }; + rfVarImpOOB = derive2 { name="rfVarImpOOB"; version="1.0.1"; sha256="16ivcnnzrgqzfzcbdyi10rwn8r8r0yyxyfpx25lxafb6pj3kxpvf"; depends=[binaryLogic dplyr ggplot2 ggpubr magrittr prob randomForest titanic]; broken = true; }; + rfinance = derive2 { name="rfinance"; version="0.1.0"; sha256="0xy4jw50vqbvicpwc3drzgg8ywgpdyxda7bqym52c76vsghcmq2d"; depends=[cli curl data_table dplyr glue httr janitor lubridate magrittr PerformanceAnalytics readr rvest stringr tibble TTR xml2 xts]; broken = true; }; rgho = derive2 { name="rgho"; version="2.0.2"; sha256="02p7xnfczbnvbm60hhfyywwg8iwsakk1gm29xsj9vq3ldxdjxbbv"; depends=[curl dplyr httr jsonlite lazyeval magrittr memoise readr rlang tibble tidyr]; broken = true; }; + ri = derive2 { name="ri"; version="0.9"; sha256="00y01n9cx95bjhdpnh7vi0xd5p6al3sxbjszbyxafn7m9mygmnhv"; depends=[]; broken = true; }; rijkspalette = derive2 { name="rijkspalette"; version="1.0.2"; sha256="00726q8s36si08ghd9sgi7ikadcj11xqwhgv8f3cml6lvwz7ppzz"; depends=[crayon imager jsonlite]; broken = true; }; - rnetcarto = derive2 { name="rnetcarto"; version="0.2.4"; sha256="0fk5rym6zp049bl1f7bkl2231mjh3pgnxn0nhvmzpsah08rh4rr6"; depends=[]; broken = true; }; + riskCommunicator = derive2 { name="riskCommunicator"; version="1.0.0"; sha256="0j4pdz4b0mq116yy9zyz4bf5avvp74q3a026b5hn7dr2xhvp4hb3"; depends=[boot dplyr ggplot2 gridExtra magrittr MASS purrr rlang tidyr tidyselect]; broken = true; }; + rknn = derive2 { name="rknn"; version="1.2-1"; sha256="1x9r01314q0wgqwqzd7d13ycjzb4jzghzd3whgjvm2rsmnabai95"; depends=[gmp]; broken = true; }; + rld = derive2 { name="rld"; version="1.0"; sha256="1glv4q25z14hcwifwg623h77p4awpsn3nk843pnph4sb3p5qbmn3"; depends=[emdbook MASS survival]; broken = true; }; + rmaf = derive2 { name="rmaf"; version="3.0.1"; sha256="0w247mamwgibr5576p5c2lzaiz2lv2c25n7gw9q99s7rc4bps7j7"; depends=[]; broken = true; }; + rngwell19937 = derive2 { name="rngwell19937"; version="0.6-0"; sha256="0m6icqf7nckdxxvmqvwfkrpjs10hc7l8xisc65q8iqpnpwl5p2f6"; depends=[]; broken = true; }; robin = derive2 { name="robin"; version="1.1.0"; sha256="11z09g4nzswdqhx5w0vmx1gmxkh0k451hr50avcny6q1r7hykjk6"; depends=[DescTools fdatest ggplot2 gprege gridExtra igraph networkD3 qpdf]; broken = true; }; + rpcdsearch = derive2 { name="rpcdsearch"; version="1.0"; sha256="17g3x15qgv2hamlj451sb88i83n8svw5vnmjpijp5cnn5d1jx0d6"; depends=[assertthat combinat dplyr stringr xlsx]; broken = true; }; rpsychi = derive2 { name="rpsychi"; version="0.8"; sha256="1h40kbqvvwwjkz5hrclj6j22zhav3yyfbbhqahs1whwjkksnam4w"; depends=[gtools]; broken = true; }; + rr = derive2 { name="rr"; version="1.4"; sha256="1c2h6ibjfwrjfqh1if3c90pdh0g2rf3p71j4p9w23xbbrx2l80pl"; depends=[arm coda magic MASS]; broken = true; }; rredis = derive2 { name="rredis"; version="1.7.0"; sha256="0wzamwpmx20did8xj8x9dllri2ps83viyqjic18ari7i4h1bpixv"; depends=[]; broken = true; }; rsolr = derive2 { name="rsolr"; version="0.0.11"; sha256="0h82x9ihzgw9l1ksn1l5w7x3vgyy6zlbdbvg9a4pa1iinhlf87ic"; depends=[BiocGenerics graph RCurl restfulr rjson S4Vectors XML]; broken = true; }; + rsurfer = derive2 { name="rsurfer"; version="0.2"; sha256="14zd8fhak12yha6miwb84085722v5ipk8lagijhc6af291kp70i9"; depends=[gdata stringr]; broken = true; }; + rvTDT = derive2 { name="rvTDT"; version="1.0"; sha256="09c2fbqnlwkhaxfmgpsdprl0bb447ajk9xl7qdlda201fvxkdc8v"; depends=[CompQuadForm]; broken = true; }; + sBF = derive2 { name="sBF"; version="1.1.1"; sha256="0dankakl4rwl9apl46hk57ps4mvn2l1crw4gdqds26fc8w6f6rab"; depends=[]; broken = true; }; + saccades = derive2 { name="saccades"; version="0.1-1"; sha256="138a6g3hjmcyvflpxx1lhgxnb8svrynplrjnvzij7c4bzkp8zip6"; depends=[zoom]; broken = true; }; salbm = derive2 { name="salbm"; version="1.0"; sha256="06nizpphyn5q292b2kbsjax0ljw3340n655qwiyp8lvi2zcnl6jy"; depends=[randomForestSRC]; broken = true; }; salem = derive2 { name="salem"; version="0.2.0"; sha256="1pk27d57bmds0jvnvwai2scjy798lb7w6lb84yxl4ccgyn1ldh45"; depends=[]; broken = true; }; sapa = derive2 { name="sapa"; version="2.0-3"; sha256="0kj681rd4c2lvqr926lb6f4qwp281x5274dg6vbk8pf5y7s0qlpc"; depends=[ifultools splus2R]; broken = true; }; + scar = derive2 { name="scar"; version="0.2-1"; sha256="04x42414qxrz8c7xrnmpr00r46png2jy5giwicdx6gx8jwrkzhzs"; depends=[]; broken = true; }; + scenario = derive2 { name="scenario"; version="1.0"; sha256="0v1b00kiny21yx4qkk2x51cy1zqibdnd68z76qia7h5py28yhxsi"; depends=[]; broken = true; }; + scpm = derive2 { name="scpm"; version="2.0.0"; sha256="1ib46m3i50annp90n2ih4qdxabxik4ngg9j0a5hgspsvk1i4hrvp"; depends=[interp lattice MASS Matrix mvtnorm RandomFields rgl]; broken = true; }; scrapeR = derive2 { name="scrapeR"; version="0.1.6"; sha256="1rqgqpn9rc43rh356z9gb51pjhdczr9a9mgv0i078nniq156rmlb"; depends=[RCurl XML]; broken = true; }; scriptests = derive2 { name="scriptests"; version="1.0-16"; sha256="11l145gvzkxqwbzw976rq94krly1p4lahqw051dwaacarq4hnrdg"; depends=[]; broken = true; }; + sdat = derive2 { name="sdat"; version="1.1"; sha256="1mxijw2yfblqjvqqb2xrzhfn9c872i1q9ggw24xicvr2fk4lvjw6"; depends=[]; broken = true; }; + sdtoolkit = derive2 { name="sdtoolkit"; version="2.33-1"; sha256="0pirgzcn8b87hjb35bmg082qp14idc5pfvm6dikpgkswag23hwh8"; depends=[]; broken = true; }; seedwater = derive2 { name="seedwater"; version="2.0"; sha256="1q6q612245hqqx89jzlp77f73vj2baxi0bghd9l8kpjz4ydh6rv8"; depends=[rpanel]; broken = true; }; selfmade = derive2 { name="selfmade"; version="0.1"; sha256="0d3v202dqr3c2564g6w7k27mhy1nxx7ngpiai7yxq2s88wa7cydi"; depends=[lme4 Matrix mgcv]; broken = true; }; semPLS = derive2 { name="semPLS"; version="1.0-10"; sha256="0q5linjyv5npkw4grx3vq58iq2q1grf06ikivhkg8w7rvb7pqn6b"; depends=[lattice]; broken = true; }; + semdiag = derive2 { name="semdiag"; version="0.1.2"; sha256="0kjcflw7dn907zx6790w7hnf5db6bf549whfsc0c2r173kf13irp"; depends=[sem]; broken = true; }; sensR = derive2 { name="sensR"; version="1.5-2"; sha256="073za0z6dawba2nd45hs20m0143kckxn3iglkyqz9vdfqwyv7wlq"; depends=[MASS multcomp numDeriv]; broken = true; }; + sensitivityPStrat = derive2 { name="sensitivityPStrat"; version="1.0-6"; sha256="0rfzvkpz7dll3173gll6np65dyb40zms63fkvaiwn0lk4aryinlh"; depends=[survival]; broken = true; }; + seqR = derive2 { name="seqR"; version="1.0.1"; sha256="0a80w7pyf2hbyzlm010xj3xv1dzkdc2w9s48hhfbsig88f497ki7"; depends=[Matrix Rcpp RcppParallel rlang slam]; broken = true; }; + sequence = derive2 { name="sequence"; version="2.0"; sha256="0r5h96gcp18lwgrl2pjlr71xqspkf6qmm1m0xjq5vadalfa7y294"; depends=[]; broken = true; }; sequoia = derive2 { name="sequoia"; version="2.3.5"; sha256="1n0c24g5zl0l63nsaywwjfqsjn0ql2ckd3iqmc381qngijnckc17"; depends=[plyr]; broken = true; }; + sharpeRratio = derive2 { name="sharpeRratio"; version="1.4.2"; sha256="1l0ix779kzci647v4irxs0j83zwfchd51k8576ivis7cr5f1a9v6"; depends=[ghyp Rcpp]; broken = true; }; + shinybootstrap2 = derive2 { name="shinybootstrap2"; version="0.2.1"; sha256="17634l3swlvgj1sv56nvrpgd6rqv7y7qjq0gygljbrgpwmfj198c"; depends=[htmltools jsonlite shiny]; broken = true; }; + shinyrecap = derive2 { name="shinyrecap"; version="0.1.0"; sha256="1mic7azxz2in67g3a2ir550w8psh6kc75p6hja6m62a0yy7j2n92"; depends=[CARE1 coda conting dga future ggplot2 ipc LCMCR promises Rcapture reshape shiny shinycssloaders testthat]; broken = true; }; shinyypr = derive2 { name="shinyypr"; version="0.0.2"; sha256="1k6jsw6gnpwk90hkpa9grki0b68cab57vbd0h6ldjqr11giwcz8z"; depends=[bsplus chk dplyr DT ggplot2 lifecycle magrittr purrr readr shiny shinyjs waiter ypr]; broken = true; }; + siar = derive2 { name="siar"; version="4.2"; sha256="1c4z72jr81dzkp9xqyrrkwjsalvvksl67pnbaadkc52v84fhzx3r"; depends=[bayesm coda hdrcde MASS mnormt spatstat]; broken = true; }; + sideChannelAttack = derive2 { name="sideChannelAttack"; version="1.0-6"; sha256="1xcsy1h8gc8a4f9nzs7zv8x6v55g1pg8vy1kg64iqxm0gnz2f20l"; depends=[ade4 corpcor infotheo MASS mmap]; broken = true; }; sigQC = derive2 { name="sigQC"; version="0.1.22"; sha256="17b16mjadmsbqbai90bvryydkfy9k5ww9i65a5ahy3bfjch851f2"; depends=[biclust circlize class cluster ComplexHeatmap fmsb gplots gridGraphics GSVA KernSmooth lattice MASS mclust moments nnet RankProd]; broken = true; }; + sigmaNet = derive2 { name="sigmaNet"; version="1.1.0"; sha256="1i0xikwad9kiyrqxi1klkc4h4hyqfkxr388sw4mrx9pswfpbv3xr"; depends=[htmlwidgets igraph jsonlite RColorBrewer]; broken = true; }; simLife = derive2 { name="simLife"; version="0.5.2"; sha256="1dhrjszfgxr0j4dkc2bwykyj515ji5rkb572nmnyjgkyi652j01v"; depends=[splancs]; broken = true; }; simba = derive2 { name="simba"; version="0.3-5"; sha256="14kqxqavacckl5s1518iiwzrmlgbxz1lxy33y8c9qq7xaln41g9h"; depends=[vegan]; broken = true; }; simfinR = derive2 { name="simfinR"; version="0.2.3"; sha256="1swlgwmd5frz72i3vjv7am8s6vr6i7mv76j7hxffk3l7xmq7y53s"; depends=[crayon digest dplyr jsonlite lubridate magrittr memoise purrr]; broken = true; }; + sirt = derive2 { name="sirt"; version="3.11-21"; sha256="06lazl1navs7cpm4ql19y00h4m8yijf2mrjpvr4rsh16b157rssb"; depends=[CDM pbv Rcpp RcppArmadillo TAM]; broken = true; }; sismonr = derive2 { name="sismonr"; version="2.1.0"; sha256="1v4vfz6zc4f70fay8r9vaxj62pcp8gqnh4aczbqpym9874330vi9"; depends=[dplyr ggplot2 ggpubr igraph jsonlite magrittr rlang scales stringr tictoc tidyr truncnorm XR XRJulia]; broken = true; }; + skda = derive2 { name="skda"; version="0.1"; sha256="0a6mksr1d0j3pd0kz4jb6yh466gvl4fkrvgvnlmvivpv6b2gqs3q"; depends=[]; broken = true; }; + skynet = derive2 { name="skynet"; version="1.4.0"; sha256="1ir8sw99fvdy8zp7ncgdnggr8hv1ph21kvdi9my42vlsh2fqi5ja"; depends=[data_table dplyr geosphere ggplot2 ggrepel httr igraph leaflet maps stringr]; broken = true; }; slga = derive2 { name="slga"; version="1.2.0"; sha256="0n96vqczpzc51ln2nraxz0846amasfbm541sy0wf0dsng283mh13"; depends=[httr raster s2 sf xml2]; broken = true; }; smartR = derive2 { name="smartR"; version="0.62.3"; sha256="0ardb4arhr7qmr30b3ahf7hkwlys9i420bm8h2688phahgfkk0y8"; depends=[caret chron cluster foreign ggplot2 ggrepel ggthemes gridExtra gstat gsubfn gWidgets2 gWidgets2RGtk2 igraph jpeg jsonlite lattice mapdata mapproj maps maptools marmap mtsdi nnls PBSmapping plyr R6 RColorBrewer reshape2 rgdal rgeos rjags ROCR rpart scales shape sp spdep sqldf vegan]; broken = true; }; + smds = derive2 { name="smds"; version="1.0"; sha256="0aqf3wfn6mlsl8a32gaf9qdpyxwsx19g6mma8qzgaysdmk6vhbpd"; depends=[MASS]; broken = true; }; + snp_plotter = derive2 { name="snp.plotter"; version="0.5.1"; sha256="16apsqvkah5l0d5qcwp3lq2jspkb6n62wzr0wskmj84jblx483vv"; depends=[genetics]; broken = true; }; + snpStatsWriter = derive2 { name="snpStatsWriter"; version="1.5-6"; sha256="04qhng888yih8gc7yd6rrxvvqf98x3c2xxz22gkwqx59waqd4jlq"; depends=[colorspace snpStats]; broken = true; }; + snpar = derive2 { name="snpar"; version="1.0"; sha256="0c9myg748jm7khqs8yhg2glxgar1wcf6gyg0xwbmw0qc41myzfnq"; depends=[]; broken = true; }; sobir = derive2 { name="sobir"; version="0.1.2"; sha256="0di9mk1c1jf8yr7jpmfm19w2w3p9lz1mkgrv3bmfyab83aghvbfp"; depends=[DescTools devtools dplyr ggplot2 raster rlang scales sp statmod stringr tidyr usethis]; broken = true; }; + someKfwer = derive2 { name="someKfwer"; version="1.2"; sha256="0widny5l04ja91fy16x4giwrabwqhx0fs3yl48pv9xh4zj6sx563"; depends=[]; broken = true; }; + sourceR = derive2 { name="sourceR"; version="1.1.0"; sha256="09mikl6rkigx2bdnwqsgxwksz40lspq27hsrhlnfyz5yhs31ssda"; depends=[assertthat cluster dplyr gplots gtools R6 Rcpp reshape2 SPIn tensorA]; broken = true; }; spANOVA = derive2 { name="spANOVA"; version="0.99.3"; sha256="0w817zwbk6amh3n3j8wzjr15qqhfbk9s23c77b27iwcc5akdgbix"; depends=[ape car DT geoR gtools knitr MASS Matrix multcomp multcompView mvtnorm rmarkdown ScottKnott shiny shinyBS shinycssloaders shinythemes spatialreg spdep xtable]; broken = true; }; - spNetwork = derive2 { name="spNetwork"; version="0.2.1"; sha256="0hmg68v5a7d1ixwj9nvh7kd948r7kspar6nd3yp02mgj495ps1z8"; depends=[BH cubature data_table future_apply ggplot2 igraph maptools progressr raster Rcpp RcppArmadillo RcppProgress Rdpack rgeos SearchTrees sp spdep]; broken = true; }; + spNNGP = derive2 { name="spNNGP"; version="0.1.7"; sha256="05pvjfckwindvaq96b4kmyavfkk93988xcizlqmkp9f3vqvxrr69"; depends=[coda Formula RANN]; broken = true; }; + space = derive2 { name="space"; version="0.1-1.1"; sha256="09dpksbda4lg5hax47a9h9shjmggza6583slvdj0fldblykpyxck"; depends=[]; broken = true; }; + spagmix = derive2 { name="spagmix"; version="0.3-5"; sha256="0rjdsg1pl8vpbcyyiqaqgc10h3i0q8xqivpawfaw43ybz15csnzl"; depends=[abind mvtnorm RandomFields sparr spatstat spatstat_core spatstat_geom spatstat_linnet spatstat_random]; broken = true; }; + sparseSEM = derive2 { name="sparseSEM"; version="2.5"; sha256="0ig8apsi94kvbcq3i8nzmywbdizlss7c6r9bppcyl9lxgikc3cds"; depends=[]; broken = true; }; sparsebn = derive2 { name="sparsebn"; version="0.1.2"; sha256="1b1601n3nmxck6a27xqxpsa79p4xnz7yyzdfqiddn9zd2b4v9wc5"; depends=[ccdrAlgorithm discretecdAlgorithm sparsebnUtils]; broken = true; }; spate = derive2 { name="spate"; version="1.7"; sha256="1cr5jjrycfj9larsqgzfakk4qgfz8m5djg4ddzk6s3lg2iw06y43"; depends=[mvtnorm truncnorm]; broken = true; }; + spatialnbda = derive2 { name="spatialnbda"; version="1.0"; sha256="14mx5jybymasyia752f3vnr5vmswcavbz8bpqr69vlxphw27qkwk"; depends=[mvtnorm SocialNetworks]; broken = true; }; + spc4sts = derive2 { name="spc4sts"; version="0.5.5"; sha256="14398a65fpdjlr39lwivin551m31mcr5hx47fx2dx7sklq8kr2bg"; depends=[gridExtra LS2Wstat rpart]; broken = true; }; + spcr = derive2 { name="spcr"; version="2.1"; sha256="08lpcj49sj0bc2vz54wigdb9dqn182c11q31n3sdkc41spgk0s7a"; depends=[]; broken = true; }; spe = derive2 { name="spe"; version="1.1.2"; sha256="0xyx42n3gcsgqmy80nc9la6p6gq07anpzx0afwffyx9fv20fvys0"; depends=[]; broken = true; }; specmine = derive2 { name="specmine"; version="3.1.6"; sha256="0ik3nsb9mrja6709fwsf97f9qbf7lmmyc2zqrm7398h3mibf64l7"; depends=[baseline caret compare e1071 ellipse genefilter GGally ggplot2 impute imputeTS MASS Metrics mrbin narray pcaPP plotly pls RColorBrewer readJDX speaq specmine_datasets]; broken = true; }; specmine_datasets = derive2 { name="specmine.datasets"; version="0.0.2"; sha256="0amqb4qy5ac1jc4g95sf4678ll3xhscyrcxq6pgh8imfyk1ifrmx"; depends=[xcms]; broken = true; }; + sped = derive2 { name="sped"; version="0.2-1"; sha256="05igpk8szdcs6kjhpmd9dmjvqdg199pz3hi0rwkhdjglxivvjzjn"; depends=[pooh]; broken = true; }; spfrontier = derive2 { name="spfrontier"; version="0.2.5"; sha256="1vnvwcjbhvbmyn5rp4760amzy8k3y156q629fjymw9rw6zy45pbf"; depends=[ezsim moments mvtnorm numDeriv optimx spdep tmvtnorm]; broken = true; }; + spftir = derive2 { name="spftir"; version="0.1.0"; sha256="07vw8igy698jx671cj6hmf6ll9xvaq81fb6la7j95pqbd6jl284z"; depends=[pracma]; broken = true; }; + spgrass6 = derive2 { name="spgrass6"; version="0.8-9"; sha256="05xvdhisad0d7c69mvahzg6pvgvmb6dph50r34981palykic7qhn"; depends=[sp XML]; broken = true; }; spiders = derive2 { name="spiders"; version="1.2"; sha256="1qklm178bgkgpvrjf024jphsdh9can8300sf0702l4h0rk2daqbq"; depends=[plyr]; broken = true; }; + spikeSlabGAM = derive2 { name="spikeSlabGAM"; version="1.1-15"; sha256="1kg1vqx9zvn8jqh8ygjifpyd00npqz3ljbs7r3zgh28bclhfywai"; depends=[akima cluster coda ggplot2 gridExtra MASS MCMCpack mvtnorm R2WinBUGS reshape scales]; broken = true; }; + spm12r = derive2 { name="spm12r"; version="2.8.3"; sha256="04bv4x7p2vv9n8zi5axpkcj13h6q08lc6qyd1czvxrpdmzsp40yb"; depends=[git2r matlabr neurobase oro_nifti R_utils]; broken = true; }; + sporm = derive2 { name="sporm"; version="1.1.1"; sha256="1bj795kmzjjcwvnrwg7dfz4jbfj488iydm0s79wrsgdq4chrrgyb"; depends=[]; broken = true; }; + sprm = derive2 { name="sprm"; version="1.2.2"; sha256="0iyijkjnyz4yx2cmazlnhkk0f5ls0c2q2aikwlzl13w6zbj040a8"; depends=[cvTools ggplot2 pcaPP reshape2 robustbase]; broken = true; }; + sprsmdl = derive2 { name="sprsmdl"; version="0.1-0"; sha256="09klwsjp5w6p7dkn5ddmqp7m9a3zcmpr9vhcf00ynwyp1w7d26gi"; depends=[]; broken = true; }; spsann = derive2 { name="spsann"; version="2.2.0"; sha256="00nlrwk50ch128brzvfxld0pcpq1syks9rvwdrcf1i2pcxnva7d0"; depends=[pedometrics Rcpp sp SpatialTools]; broken = true; }; sqp = derive2 { name="sqp"; version="0.5"; sha256="0l01zwcryv5bmzmd98gj0m5ip8nvr8lziq1awvfif1bzwvvd2kzx"; depends=[Matrix Rcpp RcppArmadillo RcppEigen Rdpack]; broken = true; }; + ssh_utils = derive2 { name="ssh.utils"; version="1.0"; sha256="08313zzzgcyvzkrkq0w0yf748ya1a9shx5xnan5891v0lah9v0b1"; depends=[stringr]; broken = true; }; + sstModel = derive2 { name="sstModel"; version="1.0.0"; sha256="04dvj6dbxidn1df2rslppl2pw2ql09rag39jrzdbnv6z20szbbd9"; depends=[data_table MASS openxlsx readxl shiny shinydashboard]; broken = true; }; + ssvd = derive2 { name="ssvd"; version="1.0"; sha256="1fdpr38qi59ijrz16jixn6ii1hvmxfjirjqfcp7dxrqz9nx8x0sk"; depends=[]; broken = true; }; stacomiR = derive2 { name="stacomiR"; version="0.6.0"; sha256="0mcq7lcwcz9s18vdd7762dfr2fyb5fqvnv0b5ljp7kdbr3ia977y"; depends=[dplyr ggplot2 Hmisc intervals lattice lubridate magrittr mgcv pool RColorBrewer reshape2 rlang RPostgres stacomirtools stringr withr xtable]; broken = true; }; stam = derive2 { name="stam"; version="0.0-1"; sha256="1x1j45fir64kffny0nssb2hwn4rcp8gd2cjv6fw4yy0l4d0xi5iv"; depends=[np sp]; broken = true; }; - stanette = derive2 { name="stanette"; version="2.21.2"; sha256="1266555964cymrgrmfzjk2x12hpyjvd18c8q0lx92wdssnqzhhzr"; depends=[BH brew coda ggplot2 gridExtra inline lattice loo pkgbuild Rcpp RcppEigen RcppParallel StanHeaders V8 withr]; broken = true; }; + stpm = derive2 { name="stpm"; version="1.7.10"; sha256="0y9rpqjn33gdqjvag4kb6dr00w80paspgj9ic25brclfv1zmzbhf"; depends=[MASS nloptr Rcpp RcppArmadillo sas7bdat survival]; broken = true; }; + stubthat = derive2 { name="stubthat"; version="1.2.1"; sha256="130naxzvswcyadwcgldvwnxxdxbfwx5vljac7901vn3ahjp75d8z"; depends=[testthat]; broken = true; }; sublime = derive2 { name="sublime"; version="1.3"; sha256="0455fppc68azxknxjvxci4kjpcj6c1jkp9adbxqrn3qnnywaj5v2"; depends=[AnalyzeFMRI downloader oro_nifti]; broken = true; }; - subscreen = derive2 { name="subscreen"; version="3.0.5"; sha256="0786p2n1a4xjsxnd31w2b079ggdzx9pgn14d5vbngrc6mgjm9hk8"; depends=[bsplus colourpicker data_table dplyr DT jsonlite plyr purrr randomForestSRC shiny shinyjs shinyWidgets]; broken = true; }; + subniche = derive2 { name="subniche"; version="1.4"; sha256="10j7wz4hyqvpi7iqq7m6jb13g0wr7k59rkxyyhfkmcq1vgm2cpdx"; depends=[ade4 polyclip siar wordcloud]; broken = true; }; + subscore = derive2 { name="subscore"; version="3.1"; sha256="1hb4ci62hxffz09sz0i27jfw7xn0pca87kiq6damz5zi418csa4v"; depends=[boot cocor CTT irtoys ltm sirt]; broken = true; }; + subtype = derive2 { name="subtype"; version="1.0"; sha256="1094q46j0njkkqv09slliclp3jf8hkg4147hmisggy433xwd19xh"; depends=[penalized ROCR]; broken = true; }; + superMDS = derive2 { name="superMDS"; version="1.0.2"; sha256="0jxbwm3izk7bc3bd01ygisn6ihnapg9k5lr6nbkr96d3blpikk04"; depends=[]; broken = true; }; + support = derive2 { name="support"; version="0.1.5"; sha256="0gs6mva1lwanq4rm8l70sid28if2l0k249ydirqkz72lz12hg1br"; depends=[BH MHadaptive nloptr randtoolbox Rcpp RcppArmadillo]; broken = true; }; + supportInt = derive2 { name="supportInt"; version="1.1"; sha256="14fh75sds05c06xkcfbijd8my3sa9kpnczzh96xx0gwj1193yya9"; depends=[ProfileLikelihood]; broken = true; }; survRatio = derive2 { name="survRatio"; version="0.1"; sha256="1xrqin3q3b7r8ga4i71ci97rsm4lj5ffd0720n7s563jkpnpyb9l"; depends=[ggplot2 ggpubr gridExtra survival]; broken = true; }; survxai = derive2 { name="survxai"; version="0.2.2"; sha256="09ig561754kjzpay2hy3n62zlk0bgwkjy8vnslrr428r8m1lj0qr"; depends=[breakDown ggplot2 pec prodlim scales survival survminer]; broken = true; }; - svines = derive2 { name="svines"; version="0.1.3"; sha256="0zpbf6xcl7sxmmmz5v4xgg70y5dijvdl0qqhlaipwv21w0mvzhxk"; depends=[assertthat BH fGarch Rcpp RcppEigen RcppThread rvinecopulib univariateML wdm]; broken = true; }; swissdd = derive2 { name="swissdd"; version="1.1.4"; sha256="0ad260b4sfism5q1jxjazg6q33283ncld1m7gfdrps3xg1kyfirs"; depends=[dplyr ggplot2 httr jsonlite lubridate purrr RCurl sf stringr tibble tidyr]; broken = true; }; + symbols = derive2 { name="symbols"; version="1.1"; sha256="1234rx3divhg60p0h0zn11viqn51fm6b8876m6rip2i6z8vrg319"; depends=[shape]; broken = true; }; taRifx = derive2 { name="taRifx"; version="1.0.6.2"; sha256="05cvjsi65fvy9hg2v3fldzwn1yd2kfirl3ffg9yfajm903dk3l49"; depends=[plyr reshape2]; broken = true; }; tabulizer = derive2 { name="tabulizer"; version="0.2.2"; sha256="0zd5cfqwgirqchw1mvziscxvzl8pb1y6rbfywkn9i9pxfydkm5vi"; depends=[png rJava tabulizerjars]; broken = true; }; tabulizerjars = derive2 { name="tabulizerjars"; version="1.0.1"; sha256="005n2gyzzmq8h0mpj8xs6ri6llzwag7nqzpm4vnzp81vwy8kmf92"; depends=[rJava]; broken = true; }; + tangles = derive2 { name="tangles"; version="0.8.1"; sha256="06a5hn5hkvgr6pcjz3n0vi1zwmv00wypi5f62agqh8mas80v44vh"; depends=[digest raster sp]; broken = true; }; + taxotools = derive2 { name="taxotools"; version="0.0.79"; sha256="1q69dh1ifa7mc8y3bdgvvg97s9prflh6mczqr4clxnsysd3xhafs"; depends=[plyr sqldf stringdist stringr taxize wikitaxa]; broken = true; }; + templateICAr = derive2 { name="templateICAr"; version="0.3.1"; sha256="1786anjsw2qnbpq6c0xwzngm6qzi84475xms5mqcmmf8vwsa0hbd"; depends=[abind ciftiTools excursions fMRIscrub ica Matrix matrixStats pesel SQUAREM]; broken = true; }; thectar = derive2 { name="thectar"; version="1.0.0"; sha256="1qh0qzg0ybb38kzm56xxlvhm201pdjm16aky5f1fdflcsszgy8mx"; depends=[proxy smacof]; broken = true; }; themetagenomics = derive2 { name="themetagenomics"; version="1.0.2"; sha256="14i81cd9cyzhi3j2d9ygwlairkimhx8ffvva3pg3xwwvpywb6mla"; depends=[ggplot2 lda lme4 Matrix plotly Rcpp rstan scales shiny stm]; broken = true; }; thickmatch = derive2 { name="thickmatch"; version="0.3.1"; sha256="0q7wpilbk8jm3q7m5hb114jpbv4ri1745v9sbdf222l6ymds6pia"; depends=[DiPs MASS plyr rcbalance]; broken = true; }; - thriftr = derive2 { name="thriftr"; version="1.1.5"; sha256="1s8fn0imja6gh5bb0h2g1pmvkwk5v0dmpml9yvcd5dhz9lxy6vdj"; depends=[R6 rly stringi]; broken = true; }; + tibblify = derive2 { name="tibblify"; version="0.1.0"; sha256="0mdi9x36nrlcbchl7b2rlf4j1k0y6c7657aznm7xa0396ciij5fk"; depends=[crayon purrr rlang tibble vctrs]; broken = true; }; tidyMicro = derive2 { name="tidyMicro"; version="1.47"; sha256="02pc6rh0l7xdrqhihi53zp17x0walc0mpm70spm7yrwzkbc486lv"; depends=[ade4 broom car cowplot dplyr Evomorph factoextra ggplot2 ggrepel gridExtra latex2exp lme4 lsr magrittr MASS Matrix plotly plyr png purrr rlang scales scatterplot3d shapes stringr ThreeWay tibble tidyr tidyverse vegan VGAM]; broken = true; }; + tiger = derive2 { name="tiger"; version="0.2.3.1"; sha256="0xr56c46b956yiwkili6vp8rhk885pcmfyd3j0rr4h8sz085md6n"; depends=[e1071 hexbin klaR lattice qualV som]; broken = true; }; tipom = derive2 { name="tipom"; version="1.0.2-1"; sha256="1gdfv0g5dw742j6ycmi0baqh6xcchp3yf2n1g8vn7jmqgz5mlhdr"; depends=[]; broken = true; }; + tlmec = derive2 { name="tlmec"; version="0.0-2"; sha256="1gak8vxmfjf05bhaj6lych7bm8hgav1x3h14k2ra7236v82rqbw7"; depends=[mvtnorm]; broken = true; }; tlsh = derive2 { name="tlsh"; version="0.1.0"; sha256="0106y17cr3hq09ahy3rxhxqzgc0655w2jr0s3iyr8zvxsdv5ahb5"; depends=[bit64 blink igraph plyr]; broken = true; }; + tmle_npvi = derive2 { name="tmle.npvi"; version="0.10.0"; sha256="00jav1ql3lv18wh9msxnjvz36z2ds44fdi6lrp1pfphh1in4vdcl"; depends=[geometry MASS Matrix R_methodsS3 R_oo R_utils]; broken = true; }; trackr = derive2 { name="trackr"; version="0.10.7"; sha256="0h7ihymdvfvnnyxfxjwshslrxngh3i2ksqvhxynrp46m20mwjavd"; depends=[CodeDepends fastdigest ggplot2 gridGraphics histry htmltools lattice miniUI RJSONIO rlang rmarkdown roprov rsolr shiny]; broken = true; }; + traitdataform = derive2 { name="traitdataform"; version="0.6.7"; sha256="1p5m480k8da4k091jiryqry0zwg8kw3s1cvvpgqjmjkz3v11dxsd"; depends=[curl data_table getPass plyr RCurl reshape2 suppdata taxize units XML]; broken = true; }; translate = derive2 { name="translate"; version="0.1.2"; sha256="1w0xrg1xxwfdanlammmixf06hwq700ssbjlc3cfigl50p87dbc5x"; depends=[functional lisp RCurl RJSONIO]; broken = true; }; + translateR = derive2 { name="translateR"; version="1.0"; sha256="11kh9hjpsj5rfmzybnh345n1gzb0pdksrjp04nzlv948yc0mg5gm"; depends=[httr RCurl RJSONIO textcat]; broken = true; }; treeperm = derive2 { name="treeperm"; version="1.6"; sha256="0mz7p9khrsq4dbkijymfvlwr01y4fvs0x6si4x5xid16s2zsnmm4"; depends=[]; broken = true; }; triggerstrategy = derive2 { name="triggerstrategy"; version="1.1.0"; sha256="1gly2brw0glcnx8is4mrlrbxgnma57vpfid5lkpz2wdakwn7y2by"; depends=[GA gsrsb ldbounds mvtnorm nleqslv]; broken = true; }; + tropicalSparse = derive2 { name="tropicalSparse"; version="0.1.0"; sha256="1ay6i3pzz5lpvznxqln31mijp86p6z0df7rvp0gm4lxvn294m7f8"; depends=[]; broken = true; }; + truncgof = derive2 { name="truncgof"; version="0.6-0"; sha256="0b499i9zjwvva5jfl9fj02jjrgy8myxqfjwa0cjg0jrpgxczgwg8"; depends=[MASS]; broken = true; }; + tsintermittent = derive2 { name="tsintermittent"; version="1.9"; sha256="1mrb6yrsjwj6j40n97sgg42ddvwhjnaiq9k7ka249bbq01gf2975"; depends=[MAPA]; broken = true; }; turfR = derive2 { name="turfR"; version="0.8-7"; sha256="007jmkppfv1x4zzvvd65fhg5k15ybjhsya2zfjgwm77wm34y81ca"; depends=[dplyr]; broken = true; }; + tvd = derive2 { name="tvd"; version="0.1.0"; sha256="07al7gpm81a16q5nppsyc5rhv6zzkcvw72isx955b1q189v073aw"; depends=[Rcpp]; broken = true; }; uFTIR = derive2 { name="uFTIR"; version="0.1.4"; sha256="1blgwn6i0dadmr7vml6rbniv103mgr9hgx2dwgcxbagfyv00ah24"; depends=[raster Rcpp RcppArmadillo sp]; broken = true; }; + ucbthesis = derive2 { name="ucbthesis"; version="1.0"; sha256="0l855if3a7862lxlnkbx52qa617mby634sbb2gkprj21rwd7lcbp"; depends=[knitr stringr]; broken = true; }; unfoldr = derive2 { name="unfoldr"; version="0.7.1"; sha256="1khas7d04g4y2kwldnsja5xk1n5mys2s66pln3l0gqlsbk67na12"; depends=[]; broken = true; }; + uniah = derive2 { name="uniah"; version="1.0"; sha256="19zwy33gwa749i81mi9h05k8k3l4xbbln3k6q70fa7ic5lqbbdzj"; depends=[ahaz Iso survival]; broken = true; }; uplift = derive2 { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[coin MASS penalized RItools tables]; broken = true; }; uplifteval = derive2 { name="uplifteval"; version="0.1.0"; sha256="1gnn40c47rpx40j210bz6fb48d70p6spv3drr8hd5b3vzfz6686c"; depends=[dplyr ggplot2 gridExtra whisker]; broken = true; }; usethis2 = derive2 { name="usethis2"; version="0.2.0"; sha256="0ljvfgwg73y71yvyz2pp4c1rzgiqk1x7kmgswxa1ay05zwdgyi0x"; depends=[microservices purrr usethis withr]; broken = true; }; valuer = derive2 { name="valuer"; version="1.1.2"; sha256="0mbwzsvy34ppngyxdzpd9w1r4f00cik4maqab9kpiflrrv9xdp78"; depends=[ggplot2 orthopolynom R6 Rcpp RcppEigen timeDate yuima]; broken = true; }; varrank = derive2 { name="varrank"; version="0.4"; sha256="03zyv1cgrdnj7gzrp1ag0sqpxikrlsj3gg4x78gp1wxqwzq7aizx"; depends=[FNN]; broken = true; }; + varycoef = derive2 { name="varycoef"; version="0.3.1"; sha256="0vhv2rraq6iqhqhjp5vdml1ppyr2xrqd97vgk4h0izk4v8r0l69k"; depends=[glmnet lhs mlr mlrMBO optimParallel ParamHelpers pbapply RandomFields smoof sp spam]; broken = true; }; + vcrpart = derive2 { name="vcrpart"; version="1.0-4"; sha256="1mg87jpdih33lalxhfcxbri439d4cgi7hqdrnvijr7qabjmnc7p4"; depends=[formula_tools nlme numDeriv partykit rpart sandwich strucchange ucminf zoo]; broken = true; }; viewshed3d = derive2 { name="viewshed3d"; version="4.0.0"; sha256="039xx39w3k3hckf0qci7j1364s47vja5s18siqjh6c5yy1w8q737"; depends=[data_table hyper_fit lidR nabor pkgcond plotrix pracma raster rgl sp viridis]; broken = true; }; viopoints = derive2 { name="viopoints"; version="0.2-1"; sha256="0cpbkkzm1rxch8gnvlmmzy8g521f5ang3nhlcnin419gha0w6avf"; depends=[]; broken = true; }; + vmd = derive2 { name="vmd"; version="0.1.0"; sha256="17c06a9l6i90ivpvf3rgv6yrsqv36qmywmmy92y5b81zqhgmh907"; depends=[ggplot2 magrittr R6 Rcpp reshape2 scales]; broken = true; }; vmdTDNN = derive2 { name="vmdTDNN"; version="0.1.0"; sha256="1vxlqfcdkwajz9r6rmz48x87csl6d7dqshabhgwnvgvy206jh3b7"; depends=[forecast nnfor vmd]; broken = true; }; vmsbase = derive2 { name="vmsbase"; version="2.2.1"; sha256="1xxn0vm9r8kiix6whlc12r0wanf6acrl9a86h44nwm019xfmlfyp"; depends=[AMORE cairoDevice chron cluster DBI ecodist fields foreign ggmap ggplot2 gmt gsubfn gWidgets2 gWidgets2RGtk2 intervals mapdata maps maptools marmap outliers PBSmapping plotrix R6 RSQLite sp sqldf VennDiagram]; broken = true; }; vortexR = derive2 { name="vortexR"; version="1.1.7"; sha256="06i2rqbc3h2kv8jjrdlrg03xrzb3yiyzpnv2rvlkjcnn46f84bgf"; depends=[betareg data_table GGally ggplot2 glmulti gtools irr plyr R_utils stringr vortexRdata]; broken = true; }; + vows = derive2 { name="vows"; version="0.5"; sha256="06akjdbab9v7r47di7syvcm7gf4k81djizg8maszs5l1ksyhmv6b"; depends=[fda gamm4 mgcv oro_nifti RLRsim shape stringr]; broken = true; }; + vrmlgen = derive2 { name="vrmlgen"; version="1.4.9"; sha256="0lifhhf41yml4k83wpkssl14jgn8jaw1lcknwbci1sd8s1c4478l"; depends=[]; broken = true; }; + vscc = derive2 { name="vscc"; version="0.2"; sha256="1p14v8vd8kckd44g4dvzh51gdkd8jvsc4bkd2i4csx8vjiwrni5w"; depends=[mclust teigen]; broken = true; }; vwr = derive2 { name="vwr"; version="0.3.0"; sha256="1h790vjcdfngs1siwldvqz8jrxpkajl3266lzadfnmchfan1x7xv"; depends=[lattice latticeExtra stringdist]; broken = true; }; wBoot = derive2 { name="wBoot"; version="1.0.3"; sha256="08qgkkv6jvqmxq5gvfp7jbrc3k8mxajfww7k8a3p8888aq411p7q"; depends=[boot simpleboot]; broken = true; }; wSVM = derive2 { name="wSVM"; version="0.1-7"; sha256="0c7rblzgagwfb8mmddkc0nd0f9rv6kapw8znpwapv3fv0j2qzq7h"; depends=[MASS quadprog]; broken = true; }; + waccR = derive2 { name="waccR"; version="0.1.0"; sha256="092p1bibyqx1gcrch68l9ilzilg5aqf46b6iagm562292cfi074l"; depends=[dplyr lubridate magrittr rvest tibble xml2]; broken = true; }; water = derive2 { name="water"; version="0.8"; sha256="0qglf922dlgi41jzz3sivq7ckmzl8axqjfg4klcgnddycmm3ha5j"; depends=[raster rgdal sp]; broken = true; }; weathercan = derive2 { name="weathercan"; version="0.6.2"; sha256="1mr926rymacx1f8k79pwhcyl5xcymq77l4dxaa2ddlrx5cmyh5cv"; depends=[dplyr httr lubridate memoise purrr rappdirs readr rlang rvest stringi stringr tidyr tidyselect xml2]; broken = true; }; + weco = derive2 { name="weco"; version="1.2"; sha256="1prk8hn782pd8g2rbbaj7y10vjimqs9n8i4rab6aw6fc3k759d6b"; depends=[]; broken = true; }; wflo = derive2 { name="wflo"; version="1.6"; sha256="04qxm1vvmgxbpj1wwj7n48klhsprkj774jnj4qfhqza33mhymydb"; depends=[emstreeR plotrix progress raster rgdal sp]; broken = true; }; - windAC = derive2 { name="windAC"; version="1.2.6"; sha256="0yx0jiz3c4slv366sic01k8l460idh4n6a797biy7wyrp6jj241x"; depends=[mvtnorm sf]; broken = true; }; + whomds = derive2 { name="whomds"; version="1.0.1"; sha256="1imz98lldrhxnqlq062vblacc25yr2gmpq9fnq8aj9y7jpc719c5"; depends=[colorspace dplyr eRm foreign ggplot2 ggraph GPArotation httr igraph intergraph lordif lubridate nFactors openxlsx plyr polycor psych purrr RColorBrewer readr rlang scales srvyr stringr survey TAM tibble tidygraph tidyr WrightMap]; broken = true; }; + winRatioAnalysis = derive2 { name="winRatioAnalysis"; version="0.1.0"; sha256="1msvc06bfzw9clinxbvr5fdw38dff0c0xii46182nwnk5kj0libr"; depends=[data_table JM Matrix MLEcens mvtnorm nlme plyr pssm survival]; broken = true; }; + wmlf = derive2 { name="wmlf"; version="0.1.2"; sha256="0zxw84l5v12r15hpyd1kbajjz3cbkn5g884kmj72y7yi0yi1b6d6"; depends=[waveslim]; broken = true; }; worldfootballR = derive2 { name="worldfootballR"; version="0.5.1"; sha256="1nyxjp4hx0ds32ixc1sbh96v2yppvakz680g3v3b8xd7lrh11xa7"; depends=[dplyr glue janitor jsonlite lubridate magrittr progress purrr qdapRegex readr rlang rvest stringi stringr tibble tidyr withr xml2]; broken = true; }; wvtool = derive2 { name="wvtool"; version="1.0"; sha256="0x9awj6g5lzqp2lhwgh9ib7jmfdzyhwazrjvw1vwacqqfhbz8qxv"; depends=[]; broken = true; }; + wwntests = derive2 { name="wwntests"; version="1.0.1"; sha256="1algk2f55dg526zjw2ycfx2dq13m3lvfs75444iyp8fvq7j3wbcs"; depends=[ftsa MASS rainbow sde]; broken = true; }; x12GUI = derive2 { name="x12GUI"; version="0.13.0"; sha256="1mga7g9gwb3nv2qs27lz4n9rp6j3svads28hql88sxaif6is3nk1"; depends=[cairoDevice Hmisc lattice RGtk2 stringr x12]; broken = true; }; xgobi = derive2 { name="xgobi"; version="1.2-15"; sha256="03ym5mm16rb1bdwrymr393r3xgprp0ign45ryym3g0x2zi8dy557"; depends=[]; broken = true; }; xlsimple = derive2 { name="xlsimple"; version="1.0.5"; sha256="1snamzq6yljiqakqd6492ylznr9kfl8w0lnaayfn14fk3w03skck"; depends=[XLConnect]; broken = true; }; + xtune = derive2 { name="xtune"; version="0.1.0"; sha256="0bpf1cx7v7q0a1jip04xd0bjg9ilagrf7wg7a9y0m6wgw7s2b9jn"; depends=[glmnet selectiveInference]; broken = true; }; + xyz = derive2 { name="xyz"; version="0.2"; sha256="13w4sb4pvgciwr8wsz785dafj2k2kpx7znz46r5d32wx88vkycp4"; depends=[Rcpp]; broken = true; }; ycinterextra = derive2 { name="ycinterextra"; version="0.1"; sha256="0hr37izbbmxqkjy6a7q8vcn0vs8an1ck9y8xfjpl5z0rygi8xc1v"; depends=[mcGlobaloptim]; broken = true; }; + yuimaGUI = derive2 { name="yuimaGUI"; version="1.3.0"; sha256="1znwfkhnmv9m32izikziqpgxx8gpw50786r81va808x7q058cp5n"; depends=[DT ggplot2 ghyp plotly quantmod sde shiny shinyBS shinydashboard shinyjs yuima]; broken = true; }; + yummlyr = derive2 { name="yummlyr"; version="0.1.1"; sha256="0xrk6g58laksz92d8mxck923sk4j92g55szrkxk123wjp5kg9vx6"; depends=[httr jsonlite]; broken = true; }; zGPS_AO = derive2 { name="zGPS.AO"; version="0.1.0"; sha256="18dqssnj4gch1yg0qvrj4j2ry95sy6a9z8yz2zi8nzhhsj8dz1qq"; depends=[doParallel doRNG dplyr foreach ggplot2 hrbrthemes MASS plotly pscl questionr viridis]; broken = true; }; } diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index c8f8934e866..96eb2364d3f 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -389,7 +389,7 @@ let Rglpk = [ pkgs.glpk ]; RGtk2 = [ pkgs.gtk2.dev ]; rhdf5 = [ pkgs.zlib ]; - Rhdf5lib = [ pkgs.zlib.dev ]; + Rhdf5lib = with pkgs; [ zlib.dev hdf5.dev ]; Rhpc = with pkgs; [ zlib bzip2.dev icu xz.dev mpi pcre.dev ]; Rhtslib = with pkgs; [ zlib.dev automake autoconf bzip2.dev xz.dev curl.dev ]; rjags = [ pkgs.jags ]; @@ -997,10 +997,6 @@ let patchPhase = "patchShebangs configure"; }); - Rhdf5lib = old.Rhdf5lib.overrideDerivation (attrs: { - patches = [ ./patches/Rhdf5lib.patch ]; - }); - rJava = old.rJava.overrideDerivation (attrs: { preConfigure = '' export JAVA_CPPFLAGS=-I${pkgs.jdk}/include/ @@ -1300,6 +1296,10 @@ let RGL_USE_NULL = "true"; }); + Rhdf5lib = old.Rhdf5lib.overrideDerivation (attrs: { + propagatedBuildInputs = attrs.propagatedBuildInputs ++ [ pkgs.hdf5.dev ]; + }); + RNifti = old.RNifti.overrideDerivation (attrs: { patches = [ ./patches/RNifti.patch ]; }); diff --git a/pkgs/development/r-modules/patches/Rhdf5lib.patch b/pkgs/development/r-modules/patches/Rhdf5lib.patch deleted file mode 100644 index b5233df4452..00000000000 --- a/pkgs/development/r-modules/patches/Rhdf5lib.patch +++ /dev/null @@ -1,12 +0,0 @@ -diff --git a/configure b/configure -index e2d292e..b13c0db 100755 ---- a/configure -+++ b/configure -@@ -3874,6 +3874,7 @@ - - echo "building the hdf5 library..."; - cd ../; -+sed -i 's#/bin/mv#mv#' configure - ./configure --with-pic --enable-shared=no --enable-cxx --enable-hl \ - --with-szlib=${SZIP_HOME} --with-zlib=${ZLIB_HOME} \ - ${WITH_S3_VFD} \ diff --git a/pkgs/development/tools/air/default.nix b/pkgs/development/tools/air/default.nix index c57307391bd..e8376638602 100644 --- a/pkgs/development/tools/air/default.nix +++ b/pkgs/development/tools/air/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "air"; - version = "1.28.0"; + version = "1.29.0"; src = fetchFromGitHub { owner = "cosmtrek"; repo = "air"; rev = "v${version}"; - sha256 = "sha256-JbFSEfm8SVyJBgZju3kfIv5WK/kFYTqkU0EH5HXl9cc="; + hash = "sha256-JbFSEfm8SVyJBgZju3kfIv5WK/kFYTqkU0EH5HXl9cc="; }; vendorSha256 = "sha256-MEIPkron42OJioV7PPhnLWVevjKDs5Bw3jDmvZbac9s="; diff --git a/pkgs/development/tools/altair-graphql-client/default.nix b/pkgs/development/tools/altair-graphql-client/default.nix index 19650671f12..c4ead040593 100644 --- a/pkgs/development/tools/altair-graphql-client/default.nix +++ b/pkgs/development/tools/altair-graphql-client/default.nix @@ -1,4 +1,4 @@ -{ lib, appimageTools, fetchurl, gsettings-desktop-schemas, gtk3 }: +{ lib, appimageTools, fetchurl }: let pname = "altair"; @@ -14,10 +14,6 @@ in appimageTools.wrapType2 { inherit src pname version; - profile = '' - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS - ''; - extraInstallCommands = '' mv $out/bin/${pname}-${version} $out/bin/${pname} diff --git a/pkgs/development/tools/analysis/brakeman/Gemfile.lock b/pkgs/development/tools/analysis/brakeman/Gemfile.lock index e11251a4681..7fb375b7672 100644 --- a/pkgs/development/tools/analysis/brakeman/Gemfile.lock +++ b/pkgs/development/tools/analysis/brakeman/Gemfile.lock @@ -1,7 +1,7 @@ GEM remote: https://rubygems.org/ specs: - brakeman (5.2.2) + brakeman (5.2.3) PLATFORMS ruby diff --git a/pkgs/development/tools/analysis/brakeman/gemset.nix b/pkgs/development/tools/analysis/brakeman/gemset.nix index 2d1ceb0393a..f401d4ad159 100644 --- a/pkgs/development/tools/analysis/brakeman/gemset.nix +++ b/pkgs/development/tools/analysis/brakeman/gemset.nix @@ -4,9 +4,9 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1bk1xz5w29cq84svnrlgcrwvy1lpkwqrv6cmkkivs3yrym09av14"; + sha256 = "1m188ypcl2lb1hin21fmyk9d4fbjw4w7cr2k6l37jasw3rmgnvjv"; type = "gem"; }; - version = "5.2.2"; + version = "5.2.3"; }; } diff --git a/pkgs/development/tools/analysis/cargo-tarpaulin/default.nix b/pkgs/development/tools/analysis/cargo-tarpaulin/default.nix index c0609118fc8..615b2677103 100644 --- a/pkgs/development/tools/analysis/cargo-tarpaulin/default.nix +++ b/pkgs/development/tools/analysis/cargo-tarpaulin/default.nix @@ -26,5 +26,6 @@ rustPlatform.buildRustPackage rec { homepage = "https://github.com/xd009642/tarpaulin"; license = with licenses; [ mit /* or */ asl20 ]; maintainers = with maintainers; [ hugoreeves ]; + platforms = lib.platforms.x86_64; }; } diff --git a/pkgs/development/tools/analysis/checkov/default.nix b/pkgs/development/tools/analysis/checkov/default.nix index eadeec8acce..9b4416213f7 100644 --- a/pkgs/development/tools/analysis/checkov/default.nix +++ b/pkgs/development/tools/analysis/checkov/default.nix @@ -32,13 +32,13 @@ with py.pkgs; buildPythonApplication rec { pname = "checkov"; - version = "2.0.1140"; + version = "2.0.1147"; src = fetchFromGitHub { owner = "bridgecrewio"; repo = pname; rev = version; - hash = "sha256-aGO5mjBsUwpLIv73pZH1la6tyGByznTrjkW9dojkXwg="; + hash = "sha256-tk0vPkKBiGezlHEngqJBekltbpeGa2YwFnc/Ua/YMRo="; }; nativeBuildInputs = with py.pkgs; [ @@ -94,6 +94,7 @@ buildPythonApplication rec { postPatch = '' substituteInPlace setup.py \ + --replace "bc-python-hcl2==0.3.39" "bc-python-hcl2>=0.3.39" \ --replace "cyclonedx-python-lib>=0.11.0,<1.0.0" "cyclonedx-python-lib>=0.11.0" \ --replace "prettytable>=3.0.0" "prettytable" \ --replace "pycep-parser==0.3.4" "pycep-parser" diff --git a/pkgs/development/tools/analysis/frama-c/default.nix b/pkgs/development/tools/analysis/frama-c/default.nix index b5ae5055d02..0b962a97ef1 100644 --- a/pkgs/development/tools/analysis/frama-c/default.nix +++ b/pkgs/development/tools/analysis/frama-c/default.nix @@ -4,6 +4,15 @@ , gdk-pixbuf, wrapGAppsHook }: +let why3_1_5 = why3; in +let why3 = why3_1_5.overrideAttrs (o: rec { + version = "1.4.1"; + src = fetchurl { + url = "https://why3.gitlabpages.inria.fr/releases/${o.pname}-${version}.tar.gz"; + sha256 = "sha256:1rqyypzlvagrn43ykl0c5wxyvnry5fl1ykn3xcvlzgghk96yq3jq"; + }; +}); in + let mkocamlpath = p: "${p}/lib/ocaml/${ocamlPackages.ocaml.version}/site-lib"; runtimeDeps = with ocamlPackages; [ diff --git a/pkgs/development/tools/analysis/rr/unstable.nix b/pkgs/development/tools/analysis/rr/unstable.nix index 35098c1bcfc..8ffdbc88e4d 100644 --- a/pkgs/development/tools/analysis/rr/unstable.nix +++ b/pkgs/development/tools/analysis/rr/unstable.nix @@ -11,12 +11,12 @@ let in rr.overrideAttrs (old: { - version = "unstable-2021-07-06"; + version = "unstable-2022-05-12"; src = fetchFromGitHub { owner = "mozilla"; repo = "rr"; - rev = "0fc21a8d654dabc7fb1991d76343824cb7951ea0"; - sha256 = "0s851rflxmvxcfw97zmplcwzhv86xmd3my78pi4c7gkj18d621i5"; + rev = "c96cb688106634ad09af6214aa91252c3a4f74b1"; + sha256 = "sha256-K4cEQnvBXr/j9qXCgIHLqMrRzm96ushTO5STivRj+Mk="; }; }) diff --git a/pkgs/development/tools/analysis/tfsec/default.nix b/pkgs/development/tools/analysis/tfsec/default.nix index be622e99e91..cd4ba9a80cf 100644 --- a/pkgs/development/tools/analysis/tfsec/default.nix +++ b/pkgs/development/tools/analysis/tfsec/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "tfsec"; - version = "1.21.0"; + version = "1.21.2"; src = fetchFromGitHub { owner = "aquasecurity"; repo = pname; rev = "v${version}"; - sha256 = "sha256-z2RVMPZykz2FUsmn5sQs3fAK/h+cWv+A/56rhOlHkGA="; + sha256 = "sha256-oKHGowW/LetNGtMA/sTWhmc98Tt6X475CbpqI88g4Jc="; }; ldflags = [ @@ -21,7 +21,7 @@ buildGoModule rec { # "-extldflags '-fno-PIC -static'" ]; - vendorSha256 = "sha256-R5sks8mbY3JpKcVl7XBKst/QI8ZWIqXAR3D6/eflV1Q="; + vendorSha256 = "sha256-l39wXMgJLWIf0TcM6VQpcV4ckHqW/SjMy07e9w7dbgs="; subPackages = [ "cmd/tfsec" diff --git a/pkgs/development/tools/apkid/default.nix b/pkgs/development/tools/apkid/default.nix index 2cb1c4e8d00..71e1efa0524 100644 --- a/pkgs/development/tools/apkid/default.nix +++ b/pkgs/development/tools/apkid/default.nix @@ -5,13 +5,14 @@ python3.pkgs.buildPythonApplication rec { pname = "apkid"; - version = "2.1.1"; + version = "2.1.3"; + format = "setuptools"; src = fetchFromGitHub { owner = "rednaga"; repo = "APKiD"; rev = "v${version}"; - sha256 = "1p6kdjjw2jhwr875445w43k46n6zwpz0l0phkl8d3y1v4gi5l6dx"; + hash = "sha256-U4CsPTA0fXCzj5iLTbLFGudAvewVCzxe4xl0osoBy5A="; }; propagatedBuildInputs = with python3.pkgs; [ @@ -28,12 +29,14 @@ python3.pkgs.buildPythonApplication rec { ''; postPatch = '' - # The next release will have support for later yara-python releases + # We have dex support enabled in yara-python substituteInPlace setup.py \ - --replace "yara-python==3.11.0" "yara-python" + --replace "yara-python-dex>=1.0.1" "yara-python" ''; - pythonImportsCheck = [ "apkid" ]; + pythonImportsCheck = [ + "apkid" + ]; meta = with lib; { description = "Android Application Identifier"; diff --git a/pkgs/development/tools/b4/default.nix b/pkgs/development/tools/b4/default.nix index 30d38aac2ae..ec5542e8f1a 100644 --- a/pkgs/development/tools/b4/default.nix +++ b/pkgs/development/tools/b4/default.nix @@ -1,20 +1,14 @@ -{ lib, python3Packages }: +{ lib, python3Packages, patatt }: python3Packages.buildPythonApplication rec { pname = "b4"; - version = "0.6.2"; + version = "0.8.0"; src = python3Packages.fetchPypi { inherit pname version; - sha256 = "1j904dy9cwxl85k2ngc498q5cdnqwsmw3jibjr1m55w8aqdck68z"; + sha256 = "sha256-fVHW27KIBT/GQ7hOx67qpVlOHLjHwdQcYl2XgCPTvoQ="; }; - preConfigure = '' - substituteInPlace setup.py \ - --replace 'requests~=2.24.0' 'requests~=2.25' \ - --replace 'dnspython~=2.0.0' 'dnspython~=2.1' - ''; - # tests make dns requests and fails doCheck = false; @@ -22,10 +16,7 @@ python3Packages.buildPythonApplication rec { requests dnspython dkimpy - - # These may be required in the future for other patch attestation features - #pycryptodomex~=3.9.9 - #PyNaCl + patatt ]; meta = with lib; { diff --git a/pkgs/development/tools/bashate/default.nix b/pkgs/development/tools/bashate/default.nix index 76e523170ca..9b6d9361726 100644 --- a/pkgs/development/tools/bashate/default.nix +++ b/pkgs/development/tools/bashate/default.nix @@ -1,5 +1,5 @@ { lib -, Babel +, babel , buildPythonApplication , fetchPypi , fixtures @@ -21,7 +21,7 @@ buildPythonApplication rec { }; propagatedBuildInputs = [ - Babel + babel pbr setuptools ]; diff --git a/pkgs/development/tools/build-managers/buck/default.nix b/pkgs/development/tools/build-managers/buck/default.nix index 0b893ea808a..1602b808341 100644 --- a/pkgs/development/tools/build-managers/buck/default.nix +++ b/pkgs/development/tools/build-managers/buck/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "buck"; - version = "2021.01.12.01"; + version = "2021.05.05.01"; src = fetchFromGitHub { owner = "facebook"; repo = pname; rev = "v${version}"; - sha256 = "sha256-NFiMQ+cG93R10LlkfUMzZ4TnV0uO5G+8S5TiMI6hU5o="; + sha256 = "sha256-mASJCLxW7320MXYUUWYfaxs9AbSdltxlae8OQsPUZJc="; }; patches = [ ./pex-mtime.patch ]; diff --git a/pkgs/development/tools/build-managers/corrosion/default.nix b/pkgs/development/tools/build-managers/corrosion/default.nix index 9f0421d3eee..51cc427ff19 100644 --- a/pkgs/development/tools/build-managers/corrosion/default.nix +++ b/pkgs/development/tools/build-managers/corrosion/default.nix @@ -8,27 +8,22 @@ stdenv.mkDerivation rec { pname = "corrosion"; - version = "unstable-2021-11-23"; + version = "0.2.1"; src = fetchFromGitHub { - owner = "AndrewGaspar"; + owner = "corrosion-rs"; repo = "corrosion"; - rev = "f679545a63a8b214a415e086f910126ab66714fa"; - sha256 = "sha256-K+QdhWc5n5mH6yxiQa/v5HsrqnWJ5SM93IprVpyCVO0="; + rev = "v${version}"; + hash = "sha256-nJ4ercNykECDBqecuL8cdCl4DHgbgIUmbiFBG/jiOaA="; }; - patches = [ - # https://github.com/AndrewGaspar/corrosion/issues/84 - ./cmake-install-full-dir.patch - ]; - cargoRoot = "generator"; cargoDeps = rustPlatform.fetchCargoTarball { inherit src; sourceRoot = "${src.name}/${cargoRoot}"; name = "${pname}-${version}"; - sha256 = "sha256-ZvCRgXv+ASMIL00oc3luegV1qVNDieU9J7mbIhfayGk="; + hash = "sha256-4JVbHYlMOKztWPYW7tXQdvdNh/ygfpi0CY6Ly93VxsI="; }; buildInputs = lib.optional stdenv.isDarwin libiconv; @@ -50,7 +45,8 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Tool for integrating Rust into an existing CMake project"; - homepage = "https://github.com/AndrewGaspar/corrosion"; + homepage = "https://github.com/corrosion-rs/corrosion"; + changelog = "https://github.com/corrosion-rs/corrosion/blob/${src.rev}/RELEASES.md"; license = licenses.mit; maintainers = with maintainers; [ dotlambda ]; }; diff --git a/pkgs/development/tools/buildpack/default.nix b/pkgs/development/tools/buildpack/default.nix index 2fc1a18c1ff..a4c9cd32905 100644 --- a/pkgs/development/tools/buildpack/default.nix +++ b/pkgs/development/tools/buildpack/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "pack"; - version = "0.24.1"; + version = "0.26.0"; src = fetchFromGitHub { owner = "buildpacks"; repo = pname; rev = "v${version}"; - sha256 = "sha256-zwvZ99SLeYQDSzrEy2eYPMyFh9B6LWZT3tY92EOrXnU="; + sha256 = "sha256-P6rfYrjk7MWVvNowaIKc0PzCzAyHRK+qw2BDe56CPp8="; }; - vendorSha256 = "sha256-4uMd0KaV5xrxuJ9yqpxbD3YTNaBHsH2d/IRtYRyN5+0="; + vendorSha256 = "sha256-ygHE52zYU/Zx/bSHMeTTFZyBvWrIKeuO0bciB4E0dHE="; nativeBuildInputs = [ installShellFiles ]; @@ -20,8 +20,10 @@ buildGoModule rec { ldflags = [ "-s" "-w" "-X github.com/buildpacks/pack.Version=${version}" ]; postInstall = '' - installShellCompletion --bash --name pack.bash $(PACK_HOME=$PWD $out/bin/pack completion --shell bash) - installShellCompletion --zsh --name _pack $(PACK_HOME=$PWD $out/bin/pack completion --shell zsh) + installShellCompletion --cmd pack \ + --zsh $(PACK_HOME=$PWD $out/bin/pack completion --shell zsh) \ + --bash $(PACK_HOME=$PWD $out/bin/pack completion --shell bash) \ + --fish $(PACK_HOME=$PWD $out/bin/pack completion --shell fish) ''; meta = with lib; { diff --git a/pkgs/development/tools/cocoapods/Gemfile b/pkgs/development/tools/cocoapods/Gemfile index 329b51518e4..00a6b3f80eb 100644 --- a/pkgs/development/tools/cocoapods/Gemfile +++ b/pkgs/development/tools/cocoapods/Gemfile @@ -1,3 +1,3 @@ -source 'https://rubygems.org' do - gem 'cocoapods' -end +source 'https://rubygems.org' + +gem 'cocoapods' diff --git a/pkgs/development/tools/cocoapods/Gemfile-beta b/pkgs/development/tools/cocoapods/Gemfile-beta index dd4b350b437..d8a7e8bb2e2 100644 --- a/pkgs/development/tools/cocoapods/Gemfile-beta +++ b/pkgs/development/tools/cocoapods/Gemfile-beta @@ -1,5 +1,5 @@ -source 'https://rubygems.org' do - # We need to specify a version including prerelease to pick up prereleases. - # This should pick up all future releases / prereleases. - gem 'cocoapods', '>=1.7.0.beta.1' -end +source 'https://rubygems.org' + +# We need to specify a version including prerelease to pick up prereleases. +# This should pick up all future releases / prereleases. +gem 'cocoapods', '>=1.7.0.beta.1' diff --git a/pkgs/development/tools/cocoapods/Gemfile-beta.lock b/pkgs/development/tools/cocoapods/Gemfile-beta.lock index 3904e6acf98..e0c2ff17070 100644 --- a/pkgs/development/tools/cocoapods/Gemfile-beta.lock +++ b/pkgs/development/tools/cocoapods/Gemfile-beta.lock @@ -1,11 +1,9 @@ GEM - specs: - -GEM remote: https://rubygems.org/ specs: - CFPropertyList (3.0.3) - activesupport (6.1.4.1) + CFPropertyList (3.0.5) + rexml + activesupport (6.1.6) concurrent-ruby (~> 1.0, >= 1.0.2) i18n (>= 1.6, < 2) minitest (>= 5.1) @@ -17,11 +15,11 @@ GEM httpclient (~> 2.8, >= 2.8.3) json (>= 1.5.1) atomos (0.1.3) - claide (1.0.3) - cocoapods (1.11.0) + claide (1.1.0) + cocoapods (1.11.3) addressable (~> 2.8) claide (>= 1.0.2, < 2.0) - cocoapods-core (= 1.11.0) + cocoapods-core (= 1.11.3) cocoapods-deintegrate (>= 1.0.3, < 2.0) cocoapods-downloader (>= 1.4.0, < 2.0) cocoapods-plugins (>= 1.0.0, < 2.0) @@ -36,7 +34,7 @@ GEM nap (~> 1.0) ruby-macho (>= 1.0, < 3.0) xcodeproj (>= 1.21.0, < 2.0) - cocoapods-core (1.11.0) + cocoapods-core (1.11.3) activesupport (>= 5.0, < 7) addressable (~> 2.8) algoliasearch (~> 1.0) @@ -47,7 +45,7 @@ GEM public_suffix (~> 4.0) typhoeus (~> 1.0) cocoapods-deintegrate (1.0.5) - cocoapods-downloader (1.5.1) + cocoapods-downloader (1.6.3) cocoapods-plugins (1.0.0) nap cocoapods-search (1.0.1) @@ -56,24 +54,24 @@ GEM netrc (~> 0.11) cocoapods-try (1.2.0) colored2 (3.1.2) - concurrent-ruby (1.1.9) + concurrent-ruby (1.1.10) escape (0.0.4) - ethon (0.14.0) + ethon (0.15.0) ffi (>= 1.15.0) - ffi (1.15.4) + ffi (1.15.5) fourflusher (2.3.1) fuzzy_match (2.0.4) gh_inspector (1.1.3) httpclient (2.8.3) - i18n (1.8.10) + i18n (1.10.0) concurrent-ruby (~> 1.0) - json (2.5.1) - minitest (5.14.4) + json (2.6.2) + minitest (5.15.0) molinillo (0.8.0) nanaimo (0.3.0) nap (1.1.0) netrc (0.11.0) - public_suffix (4.0.6) + public_suffix (4.0.7) rexml (3.2.5) ruby-macho (2.5.1) typhoeus (1.4.0) @@ -87,13 +85,13 @@ GEM colored2 (~> 3.1) nanaimo (~> 0.3.0) rexml (~> 3.2.4) - zeitwerk (2.4.2) + zeitwerk (2.5.4) PLATFORMS ruby DEPENDENCIES - cocoapods (>= 1.7.0.beta.1)! + cocoapods (>= 1.7.0.beta.1) BUNDLED WITH 2.2.20 diff --git a/pkgs/development/tools/cocoapods/Gemfile.lock b/pkgs/development/tools/cocoapods/Gemfile.lock index 2cc06eac273..293fe9406a9 100644 --- a/pkgs/development/tools/cocoapods/Gemfile.lock +++ b/pkgs/development/tools/cocoapods/Gemfile.lock @@ -1,11 +1,9 @@ GEM - specs: - -GEM remote: https://rubygems.org/ specs: - CFPropertyList (3.0.3) - activesupport (6.1.4.1) + CFPropertyList (3.0.5) + rexml + activesupport (6.1.6) concurrent-ruby (~> 1.0, >= 1.0.2) i18n (>= 1.6, < 2) minitest (>= 5.1) @@ -17,11 +15,11 @@ GEM httpclient (~> 2.8, >= 2.8.3) json (>= 1.5.1) atomos (0.1.3) - claide (1.0.3) - cocoapods (1.11.0) + claide (1.1.0) + cocoapods (1.11.3) addressable (~> 2.8) claide (>= 1.0.2, < 2.0) - cocoapods-core (= 1.11.0) + cocoapods-core (= 1.11.3) cocoapods-deintegrate (>= 1.0.3, < 2.0) cocoapods-downloader (>= 1.4.0, < 2.0) cocoapods-plugins (>= 1.0.0, < 2.0) @@ -36,7 +34,7 @@ GEM nap (~> 1.0) ruby-macho (>= 1.0, < 3.0) xcodeproj (>= 1.21.0, < 2.0) - cocoapods-core (1.11.0) + cocoapods-core (1.11.3) activesupport (>= 5.0, < 7) addressable (~> 2.8) algoliasearch (~> 1.0) @@ -47,7 +45,7 @@ GEM public_suffix (~> 4.0) typhoeus (~> 1.0) cocoapods-deintegrate (1.0.5) - cocoapods-downloader (1.5.1) + cocoapods-downloader (1.6.3) cocoapods-plugins (1.0.0) nap cocoapods-search (1.0.1) @@ -56,24 +54,24 @@ GEM netrc (~> 0.11) cocoapods-try (1.2.0) colored2 (3.1.2) - concurrent-ruby (1.1.9) + concurrent-ruby (1.1.10) escape (0.0.4) - ethon (0.14.0) + ethon (0.15.0) ffi (>= 1.15.0) - ffi (1.15.4) + ffi (1.15.5) fourflusher (2.3.1) fuzzy_match (2.0.4) gh_inspector (1.1.3) httpclient (2.8.3) - i18n (1.8.10) + i18n (1.10.0) concurrent-ruby (~> 1.0) - json (2.5.1) - minitest (5.14.4) + json (2.6.2) + minitest (5.15.0) molinillo (0.8.0) nanaimo (0.3.0) nap (1.1.0) netrc (0.11.0) - public_suffix (4.0.6) + public_suffix (4.0.7) rexml (3.2.5) ruby-macho (2.5.1) typhoeus (1.4.0) @@ -87,13 +85,13 @@ GEM colored2 (~> 3.1) nanaimo (~> 0.3.0) rexml (~> 3.2.4) - zeitwerk (2.4.2) + zeitwerk (2.5.4) PLATFORMS ruby DEPENDENCIES - cocoapods! + cocoapods BUNDLED WITH 2.2.20 diff --git a/pkgs/development/tools/cocoapods/gemset-beta.nix b/pkgs/development/tools/cocoapods/gemset-beta.nix index e1f573b89c3..3091a85e0cc 100644 --- a/pkgs/development/tools/cocoapods/gemset-beta.nix +++ b/pkgs/development/tools/cocoapods/gemset-beta.nix @@ -5,10 +5,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "19gx1jcq46x9d1pi1w8xq0bgvvfw239y4lalr8asm291gj3q3ds4"; + sha256 = "08wzpwgdm03vzb8gqr8bvfdarb89g5ah0skvwqk6qv87p55xqkyw"; type = "gem"; }; - version = "6.1.4.1"; + version = "6.1.6"; }; addressable = { dependencies = ["public_suffix"]; @@ -43,24 +43,25 @@ version = "0.1.3"; }; CFPropertyList = { + dependencies = ["rexml"]; groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0ia09r8bj3bjhcfiyr3vlk9zx7vahfypbs2lyrxix9x1jx3lfzq4"; + sha256 = "193l8r1ycd3dcxa7lsb4pqcghbk56dzc5244m6y8xmv88z6m31d7"; type = "gem"; }; - version = "3.0.3"; + version = "3.0.5"; }; claide = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0kasxsms24fgcdsq680nz99d5lazl9rmz1qkil2y5gbbssx89g0z"; + sha256 = "0bpqhc0kqjp1bh9b7ffc395l9gfls0337rrhmab4v46ykl45qg3d"; type = "gem"; }; - version = "1.0.3"; + version = "1.1.0"; }; cocoapods = { dependencies = ["addressable" "claide" "cocoapods-core" "cocoapods-deintegrate" "cocoapods-downloader" "cocoapods-plugins" "cocoapods-search" "cocoapods-trunk" "cocoapods-try" "colored2" "escape" "fourflusher" "gh_inspector" "molinillo" "nap" "ruby-macho" "xcodeproj"]; @@ -68,10 +69,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1b8773v98vkcr55yx5ydc28wq8ya53ya1v51cj7fxg5n3aa5h0cz"; + sha256 = "0cix57b2si8lc1m15mzg3mr1kmvn5sq0cy01vqwlfvvirrkf3ky3"; type = "gem"; }; - version = "1.11.0"; + version = "1.11.3"; }; cocoapods-core = { dependencies = ["activesupport" "addressable" "algoliasearch" "concurrent-ruby" "fuzzy_match" "nap" "netrc" "public_suffix" "typhoeus"]; @@ -79,10 +80,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "19bik6yj125vhq0vxb6fsb41b3i2bi4437l7dkhgrw317gx3wf9b"; + sha256 = "1lqcq7pk3znc9par217h4hv8g70w25m2a2llgyayp30dlgdj45iy"; type = "gem"; }; - version = "1.11.0"; + version = "1.11.3"; }; cocoapods-deintegrate = { groups = ["default"]; @@ -99,10 +100,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "161sjpyxipnbhwcr5kyfbcdbzs9zq20sigsazjm782cn3s466p0z"; + sha256 = "0jgipkiah3z6qb9ax6qac3b2m1idavd5adc319k5rjsfddpfgszh"; type = "gem"; }; - version = "1.5.1"; + version = "1.6.3"; }; cocoapods-plugins = { dependencies = ["nap"]; @@ -161,10 +162,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0nwad3211p7yv9sda31jmbyw6sdafzmdi2i2niaz6f0wk5nq9h0f"; + sha256 = "0s4fpn3mqiizpmpy2a24k4v365pv75y50292r8ajrv4i1p5b2k14"; type = "gem"; }; - version = "1.1.9"; + version = "1.1.10"; }; escape = { groups = ["default"]; @@ -182,20 +183,20 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1bby4hbq96vnzcdbbybcbddin8dxdnj1ns758kcr4akykningqhh"; + sha256 = "0kd7c61f28f810fgxg480j7457nlvqarza9c2ra0zhav0dd80288"; type = "gem"; }; - version = "0.14.0"; + version = "0.15.0"; }; ffi = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0ssxcywmb3flxsjdg13is6k01807zgzasdhj4j48dm7ac59cmksn"; + sha256 = "1862ydmclzy1a0cjbvm8dz7847d9rch495ib0zb64y84d3xd4bkg"; type = "gem"; }; - version = "1.15.4"; + version = "1.15.5"; }; fourflusher = { groups = ["default"]; @@ -243,30 +244,30 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0g2fnag935zn2ggm5cn6k4s4xvv53v2givj1j90szmvavlpya96a"; + sha256 = "0b2qyvnk4yynlg17ymkq4g5xgr275637fhl1mjh0valw3cb1fhhg"; type = "gem"; }; - version = "1.8.10"; + version = "1.10.0"; }; json = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0lrirj0gw420kw71bjjlqkqhqbrplla61gbv1jzgsz6bv90qr3ci"; + sha256 = "0yk5d10yvspkc5jyvx9gc1a9pn1z8v4k2hvjk1l88zixwf3wf3cl"; type = "gem"; }; - version = "2.5.1"; + version = "2.6.2"; }; minitest = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "19z7wkhg59y8abginfrm2wzplz7py3va8fyngiigngqvsws6cwgl"; + sha256 = "06xf558gid4w8lwx13jwfdafsch9maz8m0g85wnfymqj63x5nbbd"; type = "gem"; }; - version = "5.14.4"; + version = "5.15.0"; }; molinillo = { groups = ["default"]; @@ -313,10 +314,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1xqcgkl7bwws1qrlnmxgh8g4g9m10vg60bhlw40fplninb3ng6d9"; + sha256 = "1f3knlwfwm05sfbaihrxm4g772b79032q14c16q4b38z8bi63qcb"; type = "gem"; }; - version = "4.0.6"; + version = "4.0.7"; }; rexml = { groups = ["default"]; @@ -376,9 +377,9 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1746czsjarixq0x05f7p3hpzi38ldg6wxnxxw74kbjzh1sdjgmpl"; + sha256 = "09bq7j2p6mkbxnsg71s253dm2463kg51xc7bmjcxgyblqbh4ln7m"; type = "gem"; }; - version = "2.4.2"; + version = "2.5.4"; }; } diff --git a/pkgs/development/tools/cocoapods/gemset.nix b/pkgs/development/tools/cocoapods/gemset.nix index 7d74b857cf5..533535ff013 100644 --- a/pkgs/development/tools/cocoapods/gemset.nix +++ b/pkgs/development/tools/cocoapods/gemset.nix @@ -5,10 +5,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "19gx1jcq46x9d1pi1w8xq0bgvvfw239y4lalr8asm291gj3q3ds4"; + sha256 = "08wzpwgdm03vzb8gqr8bvfdarb89g5ah0skvwqk6qv87p55xqkyw"; type = "gem"; }; - version = "6.1.4.1"; + version = "6.1.6"; }; addressable = { dependencies = ["public_suffix"]; @@ -41,24 +41,25 @@ version = "0.1.3"; }; CFPropertyList = { + dependencies = ["rexml"]; groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0ia09r8bj3bjhcfiyr3vlk9zx7vahfypbs2lyrxix9x1jx3lfzq4"; + sha256 = "193l8r1ycd3dcxa7lsb4pqcghbk56dzc5244m6y8xmv88z6m31d7"; type = "gem"; }; - version = "3.0.3"; + version = "3.0.5"; }; claide = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0kasxsms24fgcdsq680nz99d5lazl9rmz1qkil2y5gbbssx89g0z"; + sha256 = "0bpqhc0kqjp1bh9b7ffc395l9gfls0337rrhmab4v46ykl45qg3d"; type = "gem"; }; - version = "1.0.3"; + version = "1.1.0"; }; cocoapods = { dependencies = ["addressable" "claide" "cocoapods-core" "cocoapods-deintegrate" "cocoapods-downloader" "cocoapods-plugins" "cocoapods-search" "cocoapods-trunk" "cocoapods-try" "colored2" "escape" "fourflusher" "gh_inspector" "molinillo" "nap" "ruby-macho" "xcodeproj"]; @@ -66,10 +67,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1b8773v98vkcr55yx5ydc28wq8ya53ya1v51cj7fxg5n3aa5h0cz"; + sha256 = "0cix57b2si8lc1m15mzg3mr1kmvn5sq0cy01vqwlfvvirrkf3ky3"; type = "gem"; }; - version = "1.11.0"; + version = "1.11.3"; }; cocoapods-core = { dependencies = ["activesupport" "addressable" "algoliasearch" "concurrent-ruby" "fuzzy_match" "nap" "netrc" "public_suffix" "typhoeus"]; @@ -77,10 +78,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "19bik6yj125vhq0vxb6fsb41b3i2bi4437l7dkhgrw317gx3wf9b"; + sha256 = "1lqcq7pk3znc9par217h4hv8g70w25m2a2llgyayp30dlgdj45iy"; type = "gem"; }; - version = "1.11.0"; + version = "1.11.3"; }; cocoapods-deintegrate = { groups = ["default"]; @@ -97,10 +98,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "161sjpyxipnbhwcr5kyfbcdbzs9zq20sigsazjm782cn3s466p0z"; + sha256 = "0jgipkiah3z6qb9ax6qac3b2m1idavd5adc319k5rjsfddpfgszh"; type = "gem"; }; - version = "1.5.1"; + version = "1.6.3"; }; cocoapods-plugins = { dependencies = ["nap"]; @@ -155,10 +156,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0nwad3211p7yv9sda31jmbyw6sdafzmdi2i2niaz6f0wk5nq9h0f"; + sha256 = "0s4fpn3mqiizpmpy2a24k4v365pv75y50292r8ajrv4i1p5b2k14"; type = "gem"; }; - version = "1.1.9"; + version = "1.1.10"; }; escape = { source = { @@ -174,20 +175,20 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1bby4hbq96vnzcdbbybcbddin8dxdnj1ns758kcr4akykningqhh"; + sha256 = "0kd7c61f28f810fgxg480j7457nlvqarza9c2ra0zhav0dd80288"; type = "gem"; }; - version = "0.14.0"; + version = "0.15.0"; }; ffi = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0ssxcywmb3flxsjdg13is6k01807zgzasdhj4j48dm7ac59cmksn"; + sha256 = "1862ydmclzy1a0cjbvm8dz7847d9rch495ib0zb64y84d3xd4bkg"; type = "gem"; }; - version = "1.15.4"; + version = "1.15.5"; }; fourflusher = { groups = ["default"]; @@ -231,30 +232,30 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0g2fnag935zn2ggm5cn6k4s4xvv53v2givj1j90szmvavlpya96a"; + sha256 = "0b2qyvnk4yynlg17ymkq4g5xgr275637fhl1mjh0valw3cb1fhhg"; type = "gem"; }; - version = "1.8.10"; + version = "1.10.0"; }; json = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0lrirj0gw420kw71bjjlqkqhqbrplla61gbv1jzgsz6bv90qr3ci"; + sha256 = "0yk5d10yvspkc5jyvx9gc1a9pn1z8v4k2hvjk1l88zixwf3wf3cl"; type = "gem"; }; - version = "2.5.1"; + version = "2.6.2"; }; minitest = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "19z7wkhg59y8abginfrm2wzplz7py3va8fyngiigngqvsws6cwgl"; + sha256 = "06xf558gid4w8lwx13jwfdafsch9maz8m0g85wnfymqj63x5nbbd"; type = "gem"; }; - version = "5.14.4"; + version = "5.15.0"; }; molinillo = { groups = ["default"]; @@ -297,10 +298,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1xqcgkl7bwws1qrlnmxgh8g4g9m10vg60bhlw40fplninb3ng6d9"; + sha256 = "1f3knlwfwm05sfbaihrxm4g772b79032q14c16q4b38z8bi63qcb"; type = "gem"; }; - version = "4.0.6"; + version = "4.0.7"; }; rexml = { groups = ["default"]; @@ -360,9 +361,9 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1746czsjarixq0x05f7p3hpzi38ldg6wxnxxw74kbjzh1sdjgmpl"; + sha256 = "09bq7j2p6mkbxnsg71s253dm2463kg51xc7bmjcxgyblqbh4ln7m"; type = "gem"; }; - version = "2.4.2"; + version = "2.5.4"; }; } diff --git a/pkgs/development/tools/cocogitto/default.nix b/pkgs/development/tools/cocogitto/default.nix index 127aebccf5a..793beb43b99 100644 --- a/pkgs/development/tools/cocogitto/default.nix +++ b/pkgs/development/tools/cocogitto/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "cocogitto"; - version = "4.1.0"; + version = "5.1.0"; src = fetchFromGitHub { owner = "oknozor"; repo = pname; rev = version; - sha256 = "sha256-g7NBtqr7Mx7ALzij4hfoVXN3izbu4ShXYhHPYw9qnWk="; + sha256 = "sha256-q2WJKAXpIO+VsOFrjdyEx06yis8f2SkCuB0blUgqq0M="; }; - cargoSha256 = "sha256-kXspbXySY5ridLUvAjv49Rm0RGt1fNsfNw9a3vd4hyI="; + cargoSha256 = "sha256-UArYBcUkXPYlNRLQBMwNhsd3bNgLeEwtJdzepMTt2no="; # Test depend on git configuration that would likly exist in a normal user enviroment # and might be failing to create the test repository it works in. @@ -29,8 +29,6 @@ rustPlatform.buildRustPackage rec { wrapProgram $out/bin/cog \ --prefix PATH : "${lib.makeBinPath [ git ]}" - wrapProgram $out/bin/coco \ - --prefix PATH : "${lib.makeBinPath [ git ]}" ''; meta = with lib; { diff --git a/pkgs/development/tools/continuous-integration/buildkite-agent/generic.nix b/pkgs/development/tools/continuous-integration/buildkite-agent/generic.nix deleted file mode 100644 index 3b9de427bde..00000000000 --- a/pkgs/development/tools/continuous-integration/buildkite-agent/generic.nix +++ /dev/null @@ -1,46 +0,0 @@ -{ lib, buildGoPackage, makeWrapper, coreutils, git, openssh, bash, gnused, gnugrep -, src, version, hasBootstrapScript, postPatch ? "" -, ... }: -let - goPackagePath = "github.com/buildkite/agent"; -in -buildGoPackage { - pname = "buildkite-agent"; - inherit version; - - inherit goPackagePath src postPatch; - - nativeBuildInputs = [ makeWrapper ]; - - postInstall = '' - ${lib.optionalString hasBootstrapScript '' - # Install bootstrap.sh - mkdir -p $out/libexec/buildkite-agent - cp $NIX_BUILD_TOP/go/src/${goPackagePath}/templates/bootstrap.sh $out/libexec/buildkite-agent - sed -e "s|#!/bin/bash|#!${bash}/bin/bash|g" -i $out/libexec/buildkite-agent/bootstrap.sh - ''} - - # Fix binary name - mv $out/bin/{agent,buildkite-agent} - - # These are runtime dependencies - wrapProgram $out/bin/buildkite-agent \ - ${lib.optionalString hasBootstrapScript "--set BUILDKITE_BOOTSTRAP_SCRIPT_PATH $out/libexec/buildkite-agent/bootstrap.sh"} \ - --prefix PATH : '${lib.makeBinPath [ openssh git coreutils gnused gnugrep ]}' - ''; - - meta = with lib; { - description = "Build runner for buildkite.com"; - longDescription = '' - The buildkite-agent is a small, reliable, and cross-platform build runner - that makes it easy to run automated builds on your own infrastructure. - It’s main responsibilities are polling buildkite.com for work, running - build jobs, reporting back the status code and output log of the job, - and uploading the job's artifacts. - ''; - homepage = "https://buildkite.com/docs/agent"; - license = licenses.mit; - maintainers = with maintainers; [ pawelpacana zimbatm rvl ]; - platforms = platforms.unix; - }; -} diff --git a/pkgs/development/tools/continuous-integration/drone/default.nix b/pkgs/development/tools/continuous-integration/drone/default.nix index 7e00f481752..d043f25f455 100644 --- a/pkgs/development/tools/continuous-integration/drone/default.nix +++ b/pkgs/development/tools/continuous-integration/drone/default.nix @@ -3,9 +3,9 @@ buildGoModule rec { pname = "drone.io${lib.optionalString (!enableUnfree) "-oss"}"; - version = "2.11.1"; + version = "2.12.0"; - vendorSha256 = "sha256-oJBGHr4LjrX7e197s4tqkiysWJS3RRW6JWI9ncs/uHw="; + vendorSha256 = "sha256-y9knuU/+hkXBLgMmJ5Trp0A3lEiLC1I2Dh85/CFBXow="; doCheck = false; @@ -13,7 +13,7 @@ buildGoModule rec { owner = "harness"; repo = "drone"; rev = "v${version}"; - sha256 = "sha256-bbWJo7PnwQaVKRpSnRK5pm0cD9orlkEOUa+y7UnACjg="; + sha256 = "sha256-Bpv08iD0wRiscwNE8TIBgZMlChQFQEegbjkzDv4mIYU="; }; tags = lib.optionals (!enableUnfree) [ "oss" "nolimit" ]; diff --git a/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix b/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix index 946d660610e..039c54cf9df 100644 --- a/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix +++ b/pkgs/development/tools/continuous-integration/gitlab-runner/default.nix @@ -1,7 +1,7 @@ { lib, buildGoModule, fetchFromGitLab, fetchurl }: let - version = "14.10.1"; + version = "15.0.0"; in buildGoModule rec { inherit version; @@ -20,7 +20,7 @@ buildGoModule rec { owner = "gitlab-org"; repo = "gitlab-runner"; rev = "v${version}"; - sha256 = "1ph8byrh8kbg6s3gm5fakqk0ss6995pidgm664z3rwibr0h6m7sm"; + sha256 = "1s7jqhrwy5wl0db37d3pms499mmy7msx4ch46w5qa25nfbxcr07c"; }; patches = [ diff --git a/pkgs/development/tools/cue/default.nix b/pkgs/development/tools/cue/default.nix index 21370ab9b5a..d159a329e53 100644 --- a/pkgs/development/tools/cue/default.nix +++ b/pkgs/development/tools/cue/default.nix @@ -1,35 +1,51 @@ -{ buildGoModule, fetchFromGitHub, lib }: +{ buildGoModule, fetchFromGitHub, lib, installShellFiles, testers, cue }: buildGoModule rec { pname = "cue"; - version = "0.4.2"; + version = "0.4.3"; src = fetchFromGitHub { owner = "cue-lang"; repo = "cue"; rev = "v${version}"; - sha256 = "sha256-6HD3wcBo21Dep4ckx+oDWAC4nuTvCzlp0bwQxZox2b4="; + sha256 = "sha256-v9MYrijnbtJpTgRZ4hmkaekisOyujldGewCRNbkVzWw="; }; - vendorSha256 = "sha256-tY9iwQW6cB1FgLAmkDNMrvIxR+i4aGYhNs4tepI654o="; + postPatch = '' + # Disable script tests + rm -f cmd/cue/cmd/script_test.go + ''; + + vendorSha256 = "sha256-jTfV8DJlr5LxS3HjOEBkVzBvZKiySrmINumXSUIq2mI="; + + excludedPackages = [ "internal/ci/updatetxtar" "internal/cmd/embedpkg" "internal/cmd/qgo" "pkg/gen" ]; - checkPhase = "go test ./..."; + nativeBuildInputs = [ installShellFiles ]; - subPackages = [ "cmd/cue" ]; + ldflags = [ "-s" "-w" "-X cuelang.org/go/cmd/cue/cmd.version=${version}" ]; - ldflags = [ - "-s" "-w" "-X cuelang.org/go/cmd/cue/cmd.version=${version}" - ]; + postInstall = '' + # Completions + installShellCompletion --cmd cue \ + --bash <($out/bin/cue completion bash) \ + --fish <($out/bin/cue completion fish) \ + --zsh <($out/bin/cue completion zsh) + ''; doInstallCheck = true; installCheckPhase = '' $out/bin/cue eval - <<<'a: "all good"' > /dev/null ''; - meta = { + passthru.tests.version = testers.testVersion { + package = cue; + command = "cue version"; + }; + + meta = with lib; { description = "A data constraint language which aims to simplify tasks involving defining and using data"; homepage = "https://cuelang.org/"; - maintainers = []; license = lib.licenses.asl20; + maintainers = with maintainers; [ aaronjheng ]; }; } diff --git a/pkgs/development/tools/database/dbmate/default.nix b/pkgs/development/tools/database/dbmate/default.nix index 313d2480e95..5acfd6ea998 100644 --- a/pkgs/development/tools/database/dbmate/default.nix +++ b/pkgs/development/tools/database/dbmate/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "dbmate"; - version = "1.14.0"; + version = "1.15.0"; src = fetchFromGitHub { owner = "amacneil"; repo = "dbmate"; rev = "v${version}"; - sha256 = "sha256-CgThS10mDYRj/VdVJeeVTMEbhvLLpWBweQ4dvo3k3Hg="; + sha256 = "sha256-eBes5BqoR7K6ntCKjWECwWuoTwAodNtLqcTei5WocLU="; }; - vendorSha256 = "sha256-cbMCGC78vc61F4cEobarMPwVts2V3NkH4/CnHGeLd/o="; + vendorSha256 = "sha256-U9VTS0rmLHxweFiIcFyoybHMBihy5ezloDC2iLc4IMc="; doCheck = false; diff --git a/pkgs/development/tools/database/sqlfluff/default.nix b/pkgs/development/tools/database/sqlfluff/default.nix index fbb435128dd..14f39f0e58a 100644 --- a/pkgs/development/tools/database/sqlfluff/default.nix +++ b/pkgs/development/tools/database/sqlfluff/default.nix @@ -5,13 +5,13 @@ python3.pkgs.buildPythonApplication rec { pname = "sqlfluff"; - version = "0.13.1"; + version = "0.13.2"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "refs/tags/${version}"; - hash = "sha256-hFpz2p8lJ4HpuSMZ8IDtqp2PIJFqEcelbYVAQpldu4o="; + hash = "sha256-tPcj4QTqO03SKyZh7OQbXvjJPheUeWGhWfqpy/IBrk4="; }; propagatedBuildInputs = with python3.pkgs; [ diff --git a/pkgs/development/tools/dump_syms/default.nix b/pkgs/development/tools/dump_syms/default.nix new file mode 100644 index 00000000000..08788878cc9 --- /dev/null +++ b/pkgs/development/tools/dump_syms/default.nix @@ -0,0 +1,52 @@ +{ lib +, stdenv +, rustPlatform +, fetchFromGitHub +, pkg-config +, openssl + +# darwin +, Security +}: + +let + pname = "dump_syms"; + version = "unstable-2022-05-05"; +in +rustPlatform.buildRustPackage { + inherit pname version; + + src = fetchFromGitHub { + owner = "mozilla"; + repo = pname; + rev = "c2743d59b5aa321ade698f84b90f86b3d35a1b06"; + hash = "sha256-hWK9KrYqbfrF8b7i33InlTa/XkoZs+h49kUsKeSaAok="; + }; + + cargoSha256 = "sha256:0vsr867nl156wpxpw01bv9fxsp6rhj9vvpz2i2yhx4kjgr1qk1kw"; + + nativeBuildInputs = [ + pkg-config + ]; + + buildInputs = [ + openssl + ] ++ lib.optionals (stdenv.isDarwin) [ + Security + ]; + + checkFlags = [ + # Disable tests that require network access + # ConnectError("dns error", Custom { kind: Uncategorized, error: "failed to lookup address information: Temporary failure in name resolution" })) }', src/windows/pdb.rs:725:56 + "--skip windows::pdb::tests::test_ntdll" + "--skip windows::pdb::tests::test_oleaut32" + ]; + + meta = with lib; { + changelog = "https://github.com/mozilla/dump_syms/releases/tag/v${version}"; + description = "Command-line utility for parsing the debugging information the compiler provides in ELF or stand-alone PDB files"; + license = licenses.asl20; + homepage = "https://github.com/mozilla/dump_syms/"; + maintainers = with maintainers; [ hexa ]; + }; +} diff --git a/pkgs/development/tools/dyff/default.nix b/pkgs/development/tools/dyff/default.nix index d71b73929ce..306de76dd92 100644 --- a/pkgs/development/tools/dyff/default.nix +++ b/pkgs/development/tools/dyff/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "dyff"; - version = "1.5.1"; + version = "1.5.2"; src = fetchFromGitHub { owner = "homeport"; repo = "dyff"; rev = "v${version}"; - sha256 = "sha256-SiOaPgwcdYrZBk7vzs6icN+pP0Yc+ImLz5lVtHaXgDc="; + sha256 = "sha256-OjI1WpkRvDjghJqUlV9iP1qpzqZKRrVZJwAsK5rBy2Q="; }; - vendorSha256 = "sha256-N3LqPnBq+jOUj4yDhY0GS4a4FTOntY4xu1TVac6va+Q="; + vendorSha256 = "sha256-eI3E83bYSMfi7fInBsPflE3zUGHF6diSkXDy04+CeqQ="; subPackages = [ "cmd/dyff" diff --git a/pkgs/development/tools/electron/generic.nix b/pkgs/development/tools/electron/generic.nix index 05d9facf60b..72cce135e04 100644 --- a/pkgs/development/tools/electron/generic.nix +++ b/pkgs/development/tools/electron/generic.nix @@ -63,6 +63,7 @@ let electronLibPath = with lib; makeLibraryPath ( [ libuuid at-spi2-atk at-spi2-core libappindicator-gtk3 ] ++ optionals (versionAtLeast version "9.0.0") [ libdrm mesa ] + ++ optionals (versionOlder version "10.0.0") [ libXScrnSaver ] ++ optionals (versionAtLeast version "11.0.0") [ libxkbcommon ] ++ optionals (versionAtLeast version "12.0.0") [ libxshmfence ] ++ optionals (versionAtLeast version "17.0.0") [ libglvnd ] @@ -95,9 +96,7 @@ let $out/lib/electron/electron \ ${lib.optionalString (lib.versionAtLeast version "15.0.0") "$out/lib/electron/chrome_crashpad_handler" } - wrapProgram $out/lib/electron/electron \ - --prefix LD_PRELOAD : ${lib.makeLibraryPath [ libXScrnSaver ]}/libXss.so.1 \ - "''${gappsWrapperArgs[@]}" + wrapProgram $out/lib/electron/electron "''${gappsWrapperArgs[@]}" ''; }; diff --git a/pkgs/development/tools/fdroidserver/default.nix b/pkgs/development/tools/fdroidserver/default.nix index 9bbe6164852..e0f9a726945 100644 --- a/pkgs/development/tools/fdroidserver/default.nix +++ b/pkgs/development/tools/fdroidserver/default.nix @@ -27,7 +27,7 @@ python.pkgs.buildPythonApplication rec { install -m 0755 gradlew-fdroid $out/bin ''; - buildInputs = [ python.pkgs.Babel ]; + buildInputs = [ python.pkgs.babel ]; propagatedBuildInputs = with python.pkgs; [ androguard diff --git a/pkgs/development/tools/fx/default.nix b/pkgs/development/tools/fx/default.nix index d3ae227ca26..10f2e300b0d 100644 --- a/pkgs/development/tools/fx/default.nix +++ b/pkgs/development/tools/fx/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "fx"; - version = "22.0.10"; + version = "24.0.0"; src = fetchFromGitHub { owner = "antonmedv"; repo = pname; rev = version; - sha256 = "sha256-BoWb27sRqcYHSLhUvjRIRIkcj90FitpbrH2R3VHsRyI="; + sha256 = "sha256-Sg+mluDOGpkEUl+3BoItuPnMqs8F6o+D5xIqF0w0EIU="; }; - vendorSha256 = "sha256-ZDPRKrum2tnhscZxLzslezYs/hOOtHwAORrAWoQhXbs="; + vendorSha256 = "sha256-4hx1AZQQ4xHBTzBK0OmrTUGMK4Rfu36cmopVV4SOjCQ="; meta = with lib; { description = "Terminal JSON viewer"; diff --git a/pkgs/development/tools/jira-cli-go/default.nix b/pkgs/development/tools/jira-cli-go/default.nix new file mode 100644 index 00000000000..75640ddf33f --- /dev/null +++ b/pkgs/development/tools/jira-cli-go/default.nix @@ -0,0 +1,44 @@ +{ lib, buildGoModule, fetchFromGitHub, less, more, installShellFiles, testVersion, jira-cli-go }: + +buildGoModule rec { + pname = "jira-cli-go"; + version = "0.3.0"; + + src = fetchFromGitHub { + owner = "ankitpokhrel"; + repo = "jira-cli"; + rev = "v${version}"; + sha256 = "sha256-sPoFv3Gzue5H6TJuQZJvqB/Dx/URp9Kt2UuIvKSnAxg="; + }; + + vendorSha256 = "sha256-UO30/D65vpu3PgEsfSDL3nYgkwo5Cj+1WKiokk7KKKg="; + + ldflags = [ + "-s" "-w" + "-X github.com/ankitpokhrel/jira-cli/internal/version.GitCommit=${src.rev}" + "-X github.com/ankitpokhrel/jira-cli/internal/version.SourceDateEpoch=0" + "-X github.com/ankitpokhrel/jira-cli/internal/version.Version=${version}" + ]; + + checkInputs = [ less more ]; # Tests expect a pager in $PATH + + passthru.tests.version = testVersion { + package = jira-cli-go; + command = "jira version"; + inherit version; + }; + + nativeBuildInputs = [ installShellFiles ]; + postInstall = '' + installShellCompletion --cmd jira \ + --bash <($out/bin/jira completion bash) \ + --zsh <($out/bin/jira completion zsh) + ''; + + meta = with lib; { + description = "Feature-rich interactive Jira command line"; + homepage = "https://github.com/ankitpokhrel/jira-cli"; + license = licenses.mit; + maintainers = with maintainers; [ bryanasdev000 ]; + }; +} diff --git a/pkgs/development/tools/jl/default.nix b/pkgs/development/tools/jl/default.nix index bc41263e96f..18bb6964ada 100644 --- a/pkgs/development/tools/jl/default.nix +++ b/pkgs/development/tools/jl/default.nix @@ -5,21 +5,8 @@ }: mkDerivation rec { pname = "jl"; - version = "0.0.5"; - src = fetchFromGitHub { - owner = "chrisdone"; - repo = "jl"; - rev = "v${version}"; - sha256 = "1hlnwsl4cj0l4x8dxwda2fcnk789cwlphl9gv9cfrivl43mgkgar"; - }; - patches = [ - # MonadFail compatibility patch. Should be removed with the next release - (fetchpatch { - url = "https://github.com/chrisdone/jl/commit/6d40308811cbc22a96b47ebe69ec308b4e9fd356.patch"; - sha256 = "1pg92ffkg8kim5r8rz8js6fjqyjisg1266sf7p9jyxjgsskwpa4g"; - }) - ]; - + version = "0.1.0"; + sha256 = "15vvn3swjpc5qmdng1fcd8m9nif4qnjmpmxc9hdw5cswzl055lkj"; isLibrary = true; isExecutable = true; libraryHaskellDepends = [ @@ -34,10 +21,4 @@ mkDerivation rec { description = "Functional sed for JSON"; maintainers = with lib.maintainers; [ fgaz ]; homepage = "https://github.com/chrisdone/jl"; - - # jl needs to be updated to work with aeson-2.0. - # As far as I can tell, there is unfortunately no where to report issues upstream - # for us to be able to track when upstream adds aeson-2.0 support. - hydraPlatforms = lib.platforms.none; - broken = true; } diff --git a/pkgs/development/tools/jmespath/default.nix b/pkgs/development/tools/jmespath/default.nix index c9510a35d10..6224a2def07 100644 --- a/pkgs/development/tools/jmespath/default.nix +++ b/pkgs/development/tools/jmespath/default.nix @@ -1,18 +1,24 @@ -{ lib, buildGoPackage, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub }: -buildGoPackage rec { +buildGoModule rec { pname = "jmespath"; - version = "0.2.2"; - rev = version; - - goPackagePath = "github.com/jmespath/go-jmespath"; + version = "0.4.0"; src = fetchFromGitHub { - inherit rev; owner = "jmespath"; repo = "go-jmespath"; - sha256 = "0f4j0m44limnjd6q5fk152g6jq2a5cshcdms4p3a1br8pl9wp5fb"; + rev = "v${version}"; + sha256 = "sha256-djA/7TCmAqCsht28b1itoiWd8Mtdsn/5uLxyT23K/qM="; }; + + vendorSha256 = "sha256-Q12muprcKB7fCxemESb4sGPyYIdmgOt3YXVUln7oabw="; + + excludedPackages = [ + "./internal/testify" + ]; + + ldflags = [ "-s" "-w" ]; + meta = with lib; { description = "A JMESPath implementation in Go"; homepage = "https://github.com/jmespath/go-jmespath"; diff --git a/pkgs/development/tools/konstraint/default.nix b/pkgs/development/tools/konstraint/default.nix index 94578591003..ed11ab5b666 100644 --- a/pkgs/development/tools/konstraint/default.nix +++ b/pkgs/development/tools/konstraint/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "konstraint"; - version = "0.19.1"; + version = "0.20.0"; src = fetchFromGitHub { owner = "plexsystems"; repo = pname; rev = "v${version}"; - sha256 = "sha256-MQ9Rb8U1CGbEgNtkOdK879dr8uOro6CAl4wGMbuT+wo="; + sha256 = "sha256-xSJxBJzLfZhBcXqKs8EZRHTpgb1YeKDTzrOiBtGBwTI="; }; vendorSha256 = "sha256-gUuceNwOI+ss2YDiIF+zxyOj53iV6kGtVhNCd5KQomo="; diff --git a/pkgs/development/tools/misc/autoconf/2.13.nix b/pkgs/development/tools/misc/autoconf/2.13.nix index 4ff990ca0ed..8fba52aa1fd 100644 --- a/pkgs/development/tools/misc/autoconf/2.13.nix +++ b/pkgs/development/tools/misc/autoconf/2.13.nix @@ -9,7 +9,8 @@ stdenv.mkDerivation rec { sha256 = "07krzl4czczdsgzrrw9fiqx35xcf32naf751khg821g5pqv12qgh"; }; - buildInputs = [ m4 perl ]; + nativeBuildInputs = [ m4 perl ]; + strictDeps = true; doCheck = true; diff --git a/pkgs/development/tools/misc/autoconf/default.nix b/pkgs/development/tools/misc/autoconf/default.nix index ac342086f6c..63302c8ed94 100644 --- a/pkgs/development/tools/misc/autoconf/default.nix +++ b/pkgs/development/tools/misc/autoconf/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, m4, perl }: +{ lib, stdenv, fetchurl, m4, perl, texinfo }: # Note: this package is used for bootstrapping fetchurl, and thus # cannot use fetchpatch! All mutable patches (generated by GitHub or @@ -8,6 +8,7 @@ stdenv.mkDerivation rec { pname = "autoconf"; version = "2.71"; + outputs = [ "out" "doc" ]; src = fetchurl { url = "mirror://gnu/autoconf/autoconf-${version}.tar.xz"; @@ -19,8 +20,15 @@ stdenv.mkDerivation rec { ./2.71-fix-race.patch ]; - nativeBuildInputs = [ m4 perl ]; + nativeBuildInputs = [ m4 perl texinfo ]; buildInputs = [ m4 ]; + postBuild = " + make html + "; + + postInstall = " + make install-html + "; # Work around a known issue in Cygwin. See # http://thread.gmane.org/gmane.comp.sysutils.autoconf.bugs/6822 for diff --git a/pkgs/development/tools/misc/devspace/default.nix b/pkgs/development/tools/misc/devspace/default.nix index df59686b2b9..0fe665606a2 100644 --- a/pkgs/development/tools/misc/devspace/default.nix +++ b/pkgs/development/tools/misc/devspace/default.nix @@ -6,13 +6,13 @@ buildGoModule rec { pname = "devspace"; - version = "5.18.4"; + version = "5.18.5"; src = fetchFromGitHub { owner = "loft-sh"; repo = "devspace"; rev = "v${version}"; - sha256 = "0s5117cgxgrxfki5drvg6d22dvrjffa03bi644zdl1p631r599r1"; + sha256 = "1i4ir8p3xpfy8z8w8gzpk1hyzs04b5llrjd6hl2hzrxd1likl0sh"; }; vendorSha256 = null; diff --git a/pkgs/development/tools/misc/elfutils/default.nix b/pkgs/development/tools/misc/elfutils/default.nix index fa867c26316..a3b093c3827 100644 --- a/pkgs/development/tools/misc/elfutils/default.nix +++ b/pkgs/development/tools/misc/elfutils/default.nix @@ -2,16 +2,17 @@ , musl-obstack, m4, zlib, zstd, bzip2, bison, flex, gettext, xz, setupDebugInfoDirs , argp-standalone , enableDebuginfod ? false, sqlite, curl, libmicrohttpd_0_9_70, libarchive +, gitUpdater }: # TODO: Look at the hardcoded paths to kernel, modules etc. stdenv.mkDerivation rec { pname = "elfutils"; - version = "0.186"; + version = "0.187"; src = fetchurl { url = "https://sourceware.org/elfutils/ftp/${version}/${pname}-${version}.tar.bz2"; - sha256 = "sha256-f2+5FJsWc9ONkXig0+D7ih7E9TqfTC/4lGlgmHlkEXc="; + sha256 = "sha256-5wsN++YQ+QxNH+DXGvFCpOJcPE7566uNLXK2UVnUVMg="; }; patches = [ @@ -62,10 +63,6 @@ stdenv.mkDerivation rec { propagatedNativeBuildInputs = [ setupDebugInfoDirs ]; - NIX_CFLAGS_COMPILE = lib.optionals stdenv.hostPlatform.isMusl [ - "-Wno-null-dereference" - ]; - configureFlags = [ "--program-prefix=eu-" # prevent collisions with binutils "--enable-deterministic-archives" @@ -81,6 +78,12 @@ stdenv.mkDerivation rec { doCheck = !stdenv.hostPlatform.isMusl; doInstallCheck = !stdenv.hostPlatform.isMusl; + passthru.updateScript = gitUpdater { + inherit pname version; + url = "https://sourceware.org/git/elfutils.git"; + rev-prefix = "elfutils-"; + }; + meta = with lib; { homepage = "https://sourceware.org/elfutils/"; description = "A set of utilities to handle ELF objects"; diff --git a/pkgs/development/tools/misc/gdbgui/default.nix b/pkgs/development/tools/misc/gdbgui/default.nix index a82ff178c9e..e953fa0ba40 100644 --- a/pkgs/development/tools/misc/gdbgui/default.nix +++ b/pkgs/development/tools/misc/gdbgui/default.nix @@ -2,80 +2,35 @@ , buildPythonApplication , fetchPypi , gdb -, flask -, six -, bidict -, python-engineio -, python-socketio , flask-socketio , flask-compress , pygdbmi , pygments -, gevent -, gevent-websocket -, eventlet , }: -let - # gdbgui only works with the latest previous major version of flask-socketio, - # which depends itself on the latest previous major versions of dependencies. - python-engineio' = python-engineio.overridePythonAttrs (old: rec { - version = "3.14.2"; - src = fetchPypi { - inherit (old) pname; - inherit version; - sha256 = "119halljynqsgswlhlh750qv56js1p7j52sc0nbwxh8450zmbd7a"; - }; - propagatedBuildInputs = [ six ]; - doCheck = false; - }); - python-socketio' = python-socketio.overridePythonAttrs (old: rec { - version = "4.6.1"; - src = fetchPypi { - inherit (old) pname; - inherit version; - sha256 = "047syhrrxh327p0fnab0d1zy25zijnj3gs1qg3kjpsy1jaj5l7yd"; - }; - propagatedBuildInputs = [ bidict python-engineio' ]; - doCheck = false; - }); - flask-socketio' = flask-socketio.overridePythonAttrs (old: rec { - version = "4.3.2"; - src = fetchPypi { - inherit (old) pname; - inherit version; - sha256 = "0s2xs9kv9cbwy8bcxszhdwlcb9ldv0fj33lwilf5vypj0wsin01p"; - }; - propagatedBuildInputs = [ flask python-socketio' ]; - doCheck = false; - }); -in buildPythonApplication rec { pname = "gdbgui"; - version = "0.14.0.2"; + + version = "0.15.0.1"; + buildInputs = [ gdb ]; propagatedBuildInputs = [ - flask - flask-socketio' + flask-socketio flask-compress pygdbmi pygments - gevent - gevent-websocket - eventlet ]; src = fetchPypi { inherit pname version; - sha256 = "1v6wwsncgnhlg5c7gsmzcp52hfblfnz5kf5pk4d0zybflsxak02d"; + sha256 = "sha256-bwrleLn3GBx4Mie2kujtaUo+XCALM+hRLySIZERlBg0="; }; postPatch = '' echo ${version} > gdbgui/VERSION.txt # remove upper version bound - sed -ie 's!, <.*"!"!' setup.py - sed -i 's/greenlet==/greenlet>=/' setup.py + sed -ie 's!,.*<.*!!' requirements.in ''; postInstall = '' diff --git a/pkgs/development/tools/misc/hydra/eval.patch b/pkgs/development/tools/misc/hydra/eval.patch index a1b7599cc2b..0be856ee757 100644 --- a/pkgs/development/tools/misc/hydra/eval.patch +++ b/pkgs/development/tools/misc/hydra/eval.patch @@ -1,34 +1,11 @@ ---- a/src/hydra-eval-jobs/hydra-eval-jobs.cc -+++ b/src/hydra-eval-jobs/hydra-eval-jobs.cc -@@ -64,11 +64,11 @@ - - static std::string queryMetaStrings(EvalState & state, DrvInfo & drv, const string & name, const string & subAttribute) - { -- Strings res; -+ std::list<std::string_view> res; - std::function<void(Value & v)> rec; - - rec = [&](Value & v) { -- state.forceValue(v); -+ state.forceValue(v, noPos); - if (v.type() == nString) - res.push_back(v.string.s); - else if (v.isList()) -@@ -112,7 +112,7 @@ - callFlake(state, lockedFlake, *vFlake); - - auto vOutputs = vFlake->attrs->get(state.symbols.create("outputs"))->value; -- state.forceValue(*vOutputs); -+ state.forceValue(*vOutputs, noPos); - - auto aHydraJobs = vOutputs->attrs->get(state.symbols.create("hydraJobs")); - if (!aHydraJobs) -@@ -191,7 +191,7 @@ - state.forceList(*a->value, *a->pos); - for (unsigned int n = 0; n < a->value->listSize(); ++n) { - auto v = a->value->listElems()[n]; -- state.forceValue(*v); -+ state.forceValue(*v, noPos); - if (v->type() == nString) - job["namedConstituents"].push_back(state.forceStringNoCtx(*v)); - } +diff --git a/src/hydra-eval-jobs/Makefile.am b/src/hydra-eval-jobs/Makefile.am +index 7a4e9c91..90742a30 100644 +--- a/src/hydra-eval-jobs/Makefile.am ++++ b/src/hydra-eval-jobs/Makefile.am +@@ -1,5 +1,5 @@ + bin_PROGRAMS = hydra-eval-jobs + + hydra_eval_jobs_SOURCES = hydra-eval-jobs.cc +-hydra_eval_jobs_LDADD = $(NIX_LIBS) ++hydra_eval_jobs_LDADD = $(NIX_LIBS) -lnixcmd + hydra_eval_jobs_CXXFLAGS = $(NIX_CFLAGS) -I ../libhydra diff --git a/pkgs/development/tools/misc/hydra/missing-std-string.patch b/pkgs/development/tools/misc/hydra/missing-std-string.patch deleted file mode 100644 index 2010b4cf178..00000000000 --- a/pkgs/development/tools/misc/hydra/missing-std-string.patch +++ /dev/null @@ -1,61 +0,0 @@ -diff --git a/src/hydra-eval-jobs/hydra-eval-jobs.cc b/src/hydra-eval-jobs/hydra-eval-jobs.cc -index acffe1d..53f2630 100644 ---- a/src/hydra-eval-jobs/hydra-eval-jobs.cc -+++ b/src/hydra-eval-jobs/hydra-eval-jobs.cc -@@ -63,7 +63,7 @@ struct MyArgs : MixEvalArgs, MixCommonArgs - - static MyArgs myArgs; - --static std::string queryMetaStrings(EvalState & state, DrvInfo & drv, const string & name, const string & subAttribute) -+static std::string queryMetaStrings(EvalState & state, DrvInfo & drv, const std::string & name, const std::string & subAttribute) - { - Strings res; - std::function<void(Value & v)> rec; -@@ -186,7 +186,7 @@ static void worker( - for (auto & i : context) - if (i.at(0) == '!') { - size_t index = i.find("!", 1); -- job["constituents"].push_back(string(i, index + 1)); -+ job["constituents"].push_back(std::string(i, index + 1)); - } - - state.forceList(*a->value, *a->pos); -diff --git a/src/hydra-queue-runner/hydra-queue-runner.cc b/src/hydra-queue-runner/hydra-queue-runner.cc -index 62eb572..a957bef 100644 ---- a/src/hydra-queue-runner/hydra-queue-runner.cc -+++ b/src/hydra-queue-runner/hydra-queue-runner.cc -@@ -87,7 +87,7 @@ void State::parseMachines(const std::string & contents) - } - - for (auto line : tokenizeString<Strings>(contents, "\n")) { -- line = trim(string(line, 0, line.find('#'))); -+ line = trim(std::string(line, 0, line.find('#'))); - auto tokens = tokenizeString<std::vector<std::string>>(line); - if (tokens.size() < 3) continue; - tokens.resize(8); -diff --git a/src/libhydra/db.hh b/src/libhydra/db.hh -index 7d5bdc5..00e8f40 100644 ---- a/src/libhydra/db.hh -+++ b/src/libhydra/db.hh -@@ -18,7 +18,7 @@ struct Connection : pqxx::connection - std::string upper_prefix = "DBI:Pg:"; - - if (hasPrefix(s, lower_prefix) || hasPrefix(s, upper_prefix)) { -- return concatStringsSep(" ", tokenizeString<Strings>(string(s, lower_prefix.size()), ";")); -+ return concatStringsSep(" ", tokenizeString<Strings>(std::string(s, lower_prefix.size()), ";")); - } - - throw Error("$HYDRA_DBI does not denote a PostgreSQL database"); -diff --git a/src/libhydra/hydra-config.hh b/src/libhydra/hydra-config.hh -index bc989f7..1688c27 100644 ---- a/src/libhydra/hydra-config.hh -+++ b/src/libhydra/hydra-config.hh -@@ -17,7 +17,7 @@ struct HydraConfig - if (hydraConfigFile && pathExists(*hydraConfigFile)) { - - for (auto line : tokenizeString<Strings>(readFile(*hydraConfigFile), "\n")) { -- line = trim(string(line, 0, line.find('#'))); -+ line = trim(std::string(line, 0, line.find('#'))); - - auto eq = line.find('='); - if (eq == std::string::npos) continue; diff --git a/pkgs/development/tools/misc/hydra/unstable.nix b/pkgs/development/tools/misc/hydra/unstable.nix index 36de9f886c1..2759c08fbca 100644 --- a/pkgs/development/tools/misc/hydra/unstable.nix +++ b/pkgs/development/tools/misc/hydra/unstable.nix @@ -4,13 +4,11 @@ , perlPackages , buildEnv , makeWrapper -, autoconf -, automake , libtool , unzip , pkg-config , sqlite -, libpqxx_6 +, libpqxx , top-git , mercurial , darcs @@ -21,12 +19,14 @@ , libxslt , perl , postgresql +, prometheus-cpp , nukeReferences , git , boehmgc , nlohmann_json , docbook_xsl , openssh +, openldap , gnused , coreutils , findutils @@ -55,7 +55,6 @@ let name = "hydra-perl-deps"; paths = with perlPackages; lib.closePropagation [ - ModulePluggable AuthenSASL CatalystActionREST CatalystAuthenticationStoreDBIxClass @@ -114,12 +113,12 @@ let TermReadKey Test2Harness TestPostgreSQL + TestSimple13 TextDiff TextTable UUID4Tiny XMLSimple YAML - nix nix.perl-bindings git ]; @@ -127,23 +126,20 @@ let in stdenv.mkDerivation rec { pname = "hydra"; - version = "2022-02-07"; + version = "2022-05-03"; src = fetchFromGitHub { owner = "NixOS"; repo = "hydra"; - rev = "517dce285a851efd732affc084c7083aed2e98cd"; - sha256 = "sha256-abWhd/VLNse3Gz7gcVbFANJLAhHV4nbOKjhVDmq/Zmg="; + rev = "7c133a98f8e689cdc13f8a1adaaa9cd75d039a35"; + sha256 = "sha256-LqBLIXYssvDoSp2Hf2+vDDB9O8VSF48HAGwL8pI2WZY="; }; + patches = [ ./eval.patch ]; + buildInputs = [ - makeWrapper - libtool - unzip - nukeReferences - sqlite - libpqxx_6 + libpqxx top-git mercurial darcs @@ -152,18 +148,18 @@ stdenv.mkDerivation rec { openssl bzip2 libxslt + nix perlDeps perl - nix - postgresql # for running the tests - nlohmann_json - boost pixz + boost + postgresql + nlohmann_json + prometheus-cpp ]; hydraPath = lib.makeBinPath ( [ - sqlite subversion openssh nix @@ -177,13 +173,21 @@ stdenv.mkDerivation rec { unzip git top-git - mercurial /*darcs*/ + mercurial + darcs gnused breezy ] ++ lib.optionals stdenv.isLinux [ rpm dpkg cdrkit ] ); - nativeBuildInputs = [ autoreconfHook pkg-config mdbook autoconf automake ]; + nativeBuildInputs = [ + autoreconfHook + makeWrapper + pkg-config + mdbook + unzip + nukeReferences + ]; checkInputs = [ cacert @@ -191,21 +195,15 @@ stdenv.mkDerivation rec { glibcLocales python3 libressl.nc - ]; - - patches = [ - ./eval.patch - ./missing-std-string.patch - (fetchpatch { - url = "https://github.com/NixOS/hydra/commit/5ae26aa7604f714dcc73edcb74fe71ddc8957f6c.patch"; - sha256 = "sha256-wkbWo8SFbT3qwVxwkKQWpQT5Jgb1Bb51yiLTlFdDN/I="; - }) + openldap ]; configureFlags = [ "--with-docbook-xsl=${docbook_xsl}/xml/xsl/docbook" ]; NIX_CFLAGS_COMPILE = "-pthread"; + OPENLDAP_ROOT = openldap; + shellHook = '' PATH=$(pwd)/src/script:$(pwd)/src/hydra-eval-jobs:$(pwd)/src/hydra-queue-runner:$(pwd)/src/hydra-evaluator:$PATH PERL5LIB=$(pwd)/src/lib:$PERL5LIB; @@ -218,6 +216,8 @@ stdenv.mkDerivation rec { export LOGNAME=''${LOGNAME:-foo} # set $HOME for bzr so it can create its trace file export HOME=$(mktemp -d) + # remove flaky test + rm t/Hydra/Controller/User/ldap-legacy.t ''; postInstall = '' diff --git a/pkgs/development/tools/misc/saleae-logic-2/default.nix b/pkgs/development/tools/misc/saleae-logic-2/default.nix index 7478c27ce9f..a0f1b097a98 100644 --- a/pkgs/development/tools/misc/saleae-logic-2/default.nix +++ b/pkgs/development/tools/misc/saleae-logic-2/default.nix @@ -1,4 +1,4 @@ -{ lib, fetchurl, makeDesktopItem, appimageTools, gtk3 }: +{ lib, fetchurl, makeDesktopItem, appimageTools }: let name = "saleae-logic-2"; version = "2.3.52"; @@ -31,10 +31,6 @@ appimageTools.wrapType2 { cp ${appimageContents}/usr/share/icons/hicolor/256x256/apps/Logic.png $out/share/pixmaps/Logic.png ''; - profile = '' - export XDG_DATA_DIRS="${gtk3}/share/gsettings-schemas/${gtk3.name}''${XDG_DATA_DIRS:+:"''$XDG_DATA_DIRS"}" - ''; - extraPkgs = pkgs: with pkgs; [ wget unzip diff --git a/pkgs/development/tools/ocaml/dune/3.nix b/pkgs/development/tools/ocaml/dune/3.nix index de661948b9c..009c3cb6fe2 100644 --- a/pkgs/development/tools/ocaml/dune/3.nix +++ b/pkgs/development/tools/ocaml/dune/3.nix @@ -6,11 +6,11 @@ else stdenv.mkDerivation rec { pname = "dune"; - version = "3.1.1"; + version = "3.2.0"; src = fetchurl { - url = "https://github.com/ocaml/dune/releases/download/${version}/fiber-${version}.tbz"; - sha256 = "sha256-AkhEVKsbmYhAx4c1CexrIwHrkmYsEy749fT1abNaa2A="; + url = "https://github.com/ocaml/dune/releases/download/${version}/chrome-trace-${version}.tbz"; + sha256 = "sha256-vR+85q557R6yb6ibsuLiOXivzrP1P1V4zxvasIoa1bw="; }; nativeBuildInputs = [ ocaml findlib ]; diff --git a/pkgs/development/tools/ocaml/js_of_ocaml/camlp4.nix b/pkgs/development/tools/ocaml/js_of_ocaml/camlp4.nix index 39f6d5f7aa2..d72a653182d 100644 --- a/pkgs/development/tools/ocaml/js_of_ocaml/camlp4.nix +++ b/pkgs/development/tools/ocaml/js_of_ocaml/camlp4.nix @@ -15,7 +15,7 @@ buildDunePackage rec { sha256 = "1v2hfq0ra9j07yz6pj6m03hrvgys4vmx0gclchv94yywpb2wc7ik"; }; - inherit (js_of_ocaml-compiler) meta; - buildInputs = [ camlp4 ocsigen_deriving ]; + + meta = builtins.removeAttrs js_of_ocaml-compiler.meta [ "mainProgram" ]; } diff --git a/pkgs/development/tools/ocaml/js_of_ocaml/compiler.nix b/pkgs/development/tools/ocaml/js_of_ocaml/compiler.nix index 7805ca26403..64313112f43 100644 --- a/pkgs/development/tools/ocaml/js_of_ocaml/compiler.nix +++ b/pkgs/development/tools/ocaml/js_of_ocaml/compiler.nix @@ -21,8 +21,9 @@ buildDunePackage rec { meta = { description = "Compiler from OCaml bytecode to Javascript"; + homepage = "https://ocsigen.org/js_of_ocaml/"; license = lib.licenses.gpl2; maintainers = [ lib.maintainers.vbgl ]; - homepage = "https://ocsigen.org/js_of_ocaml/"; + mainProgram = "js_of_ocaml"; }; } diff --git a/pkgs/development/tools/ocaml/js_of_ocaml/default.nix b/pkgs/development/tools/ocaml/js_of_ocaml/default.nix index 25826e94eb3..679fd9ab9de 100644 --- a/pkgs/development/tools/ocaml/js_of_ocaml/default.nix +++ b/pkgs/development/tools/ocaml/js_of_ocaml/default.nix @@ -5,9 +5,11 @@ buildDunePackage { pname = "js_of_ocaml"; - inherit (js_of_ocaml-compiler) version src meta useDune2; + inherit (js_of_ocaml-compiler) version src useDune2; buildInputs = [ ppxlib ]; propagatedBuildInputs = [ js_of_ocaml-compiler uchar ]; + + meta = builtins.removeAttrs js_of_ocaml-compiler.meta [ "mainProgram" ]; } diff --git a/pkgs/development/tools/ocaml/js_of_ocaml/lwt.nix b/pkgs/development/tools/ocaml/js_of_ocaml/lwt.nix index 81b1a41614b..8cdb7224d89 100644 --- a/pkgs/development/tools/ocaml/js_of_ocaml/lwt.nix +++ b/pkgs/development/tools/ocaml/js_of_ocaml/lwt.nix @@ -5,9 +5,11 @@ buildDunePackage { pname = "js_of_ocaml-lwt"; - inherit (js_of_ocaml-compiler) version src meta useDune2; + inherit (js_of_ocaml-compiler) version src useDune2; buildInputs = [ js_of_ocaml-ppx ]; propagatedBuildInputs = [ js_of_ocaml ocaml_lwt lwt_log ]; + + meta = builtins.removeAttrs js_of_ocaml-compiler.meta [ "mainProgram" ]; } diff --git a/pkgs/development/tools/ocaml/js_of_ocaml/ppx.nix b/pkgs/development/tools/ocaml/js_of_ocaml/ppx.nix index 3c0f8c76123..535fe6dae79 100644 --- a/pkgs/development/tools/ocaml/js_of_ocaml/ppx.nix +++ b/pkgs/development/tools/ocaml/js_of_ocaml/ppx.nix @@ -6,8 +6,10 @@ buildDunePackage { pname = "js_of_ocaml-ppx"; - inherit (js_of_ocaml-compiler) version src meta useDune2; + inherit (js_of_ocaml-compiler) version src useDune2; buildInputs = [ js_of_ocaml ]; propagatedBuildInputs = [ ppxlib ]; + + meta = builtins.removeAttrs js_of_ocaml-compiler.meta [ "mainProgram" ]; } diff --git a/pkgs/development/tools/ocaml/js_of_ocaml/ppx_deriving_json.nix b/pkgs/development/tools/ocaml/js_of_ocaml/ppx_deriving_json.nix index d862d4bc67b..5256cd4037f 100644 --- a/pkgs/development/tools/ocaml/js_of_ocaml/ppx_deriving_json.nix +++ b/pkgs/development/tools/ocaml/js_of_ocaml/ppx_deriving_json.nix @@ -5,7 +5,9 @@ buildDunePackage { pname = "js_of_ocaml-ppx_deriving_json"; - inherit (js_of_ocaml-compiler) version src meta useDune2; + inherit (js_of_ocaml-compiler) version src useDune2; propagatedBuildInputs = [ js_of_ocaml ppxlib ]; + + meta = builtins.removeAttrs js_of_ocaml-compiler.meta [ "mainProgram" ]; } diff --git a/pkgs/development/tools/ocaml/js_of_ocaml/tyxml.nix b/pkgs/development/tools/ocaml/js_of_ocaml/tyxml.nix index 7082e4b86c9..e371c9f10bf 100644 --- a/pkgs/development/tools/ocaml/js_of_ocaml/tyxml.nix +++ b/pkgs/development/tools/ocaml/js_of_ocaml/tyxml.nix @@ -6,9 +6,11 @@ buildDunePackage { pname = "js_of_ocaml-tyxml"; - inherit (js_of_ocaml-compiler) version src meta useDune2; + inherit (js_of_ocaml-compiler) version src useDune2; buildInputs = [ js_of_ocaml-ppx ]; propagatedBuildInputs = [ js_of_ocaml reactivedata tyxml ]; + + meta = builtins.removeAttrs js_of_ocaml-compiler.meta [ "mainProgram" ]; } diff --git a/pkgs/development/tools/ocaml/merlin/4.x.nix b/pkgs/development/tools/ocaml/merlin/4.x.nix index 635273bcfd2..b5100afee98 100644 --- a/pkgs/development/tools/ocaml/merlin/4.x.nix +++ b/pkgs/development/tools/ocaml/merlin/4.x.nix @@ -15,12 +15,13 @@ }: let - merlinVersion = "4.4"; + merlinVersion = "4.5"; hashes = { - "4.4-411" = "sha256:0chx28098mmnjbnaz5wgzsn82rh1w9dhzqmsykb412cq13msl1q4"; - "4.4-412" = "sha256:18xjpsiz7xbgjdnsxfc52l7yfh22harj0birlph4xm42d14pkn0n"; - "4.4-413" = "sha256:1ilmh2gqpwgr51w2ba8r0s5zkj75h00wkw4az61ssvivn9jxr7k0"; + "4.5-411" = "sha256:05nz6y7r91rh0lj8b6xdv3s3yknmvjc7y60v17kszgqnr887bvpn"; + "4.5-412" = "sha256:0i5c3rfzinmwdjya7gv94zyknsm32qx9dlg472xpfqivwvnnhf1z"; + "4.5-413" = "sha256:1sphq9anfg1qzrvj7hdcqflj6cmc1qiyfkljhng9fxnnr0i7550s"; + "4.5-414" = "sha256:13h588kwih05zd9p3p7q528q4zc0d1l983kkvbmkxgay5d17nn1i"; }; ocamlVersionShorthand = lib.concatStrings @@ -55,8 +56,6 @@ buildDunePackage { ./test.patch ; - useDune2 = true; - strictDeps = true; nativeBuildInputs = [ diff --git a/pkgs/development/tools/ocaml/ocaml-recovery-parser/default.nix b/pkgs/development/tools/ocaml/ocaml-recovery-parser/default.nix index 619d0ded7b3..19ce91574bf 100644 --- a/pkgs/development/tools/ocaml/ocaml-recovery-parser/default.nix +++ b/pkgs/development/tools/ocaml/ocaml-recovery-parser/default.nix @@ -27,9 +27,10 @@ buildDunePackage rec { ]; meta = with lib; { - homepage = "https://github.com/serokell/ocaml-recovery-parser"; description = "A simple fork of OCaml parser with support for error recovery"; + homepage = "https://github.com/serokell/ocaml-recovery-parser"; license = with licenses; [ lgpl2Only mit mpl20 ]; maintainers = with maintainers; [ romildo ]; + mainProgram = "menhir-recover"; }; } diff --git a/pkgs/development/tools/ocaml/ocamlbuild/default.nix b/pkgs/development/tools/ocaml/ocamlbuild/default.nix index 2caf6c67857..3d8ade975f9 100644 --- a/pkgs/development/tools/ocaml/ocamlbuild/default.nix +++ b/pkgs/development/tools/ocaml/ocamlbuild/default.nix @@ -31,10 +31,11 @@ stdenv.mkDerivation rec { ''; meta = with lib; { - homepage = "https://github.com/ocaml/ocamlbuild/"; description = "A build system with builtin rules to easily build most OCaml projects"; + homepage = "https://github.com/ocaml/ocamlbuild/"; license = licenses.lgpl2; - inherit (ocaml.meta) platforms; maintainers = with maintainers; [ vbgl ]; + mainProgram = "ocamlbuild"; + inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/tools/ocaml/ocamlscript/default.nix b/pkgs/development/tools/ocaml/ocamlscript/default.nix index 0b4b748f058..48b7d840a4f 100644 --- a/pkgs/development/tools/ocaml/ocamlscript/default.nix +++ b/pkgs/development/tools/ocaml/ocamlscript/default.nix @@ -29,5 +29,6 @@ stdenv.mkDerivation rec { inherit (ocaml.meta) platforms; description = "Natively-compiled OCaml scripts"; maintainers = [ maintainers.vbgl ]; + mainProgram = "ocamlscript"; }; } diff --git a/pkgs/development/tools/ocaml/ocp-build/default.nix b/pkgs/development/tools/ocaml/ocp-build/default.nix index 58346852181..bf87bc55021 100644 --- a/pkgs/development/tools/ocaml/ocp-build/default.nix +++ b/pkgs/development/tools/ocaml/ocp-build/default.nix @@ -24,7 +24,6 @@ stdenv.mkDerivation rec { preInstall = "mkdir -p $out/bin"; meta = with lib; { - homepage = "https://www.typerex.org/ocp-build.html"; description = "A build tool for OCaml"; longDescription = '' ocp-build is a build system for OCaml application, based on simple @@ -33,8 +32,10 @@ stdenv.mkDerivation rec { the number of cores and the automatically-inferred dependencies between source files. ''; + homepage = "https://www.typerex.org/ocp-build.html"; license = licenses.gpl3; - platforms = ocaml.meta.platforms or []; maintainers = [ maintainers.jirkamarsik ]; + mainProgram = "ocp-build"; + inherit (ocaml.meta) platforms; }; } diff --git a/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-nix.json b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-nix.json index 4a4eecf5ddb..801634201c8 100644 --- a/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-nix.json +++ b/pkgs/development/tools/parsing/tree-sitter/grammars/tree-sitter-nix.json @@ -1,9 +1,9 @@ { "url": "https://github.com/cstrahan/tree-sitter-nix", - "rev": "470b15a60520ff7b86f51732b8d8f1118c86041e", - "date": "2022-03-18T01:42:08-05:00", - "path": "/nix/store/c5y76kz7wmfq05hfw4xpqz2ahcdy924f-tree-sitter-nix", - "sha256": "1hl0mpy0i6r160v6v3nflrdi5fnmd8i5zbx963h5nj9fg4srkb5r", + "rev": "6d6aaa50793b8265b6a8b6628577a0083d3b923d", + "date": "2021-11-29T00:27:21-06:00", + "path": "/nix/store/6cjadxvqbrh205lsqnk2rnzq3badxdxv-tree-sitter-nix", + "sha256": "0cbk6dqppasrvnm87pwfgm718z6b0xmy9m7zj8ysil0h8bklz1w9", "fetchLFS": false, "fetchSubmodules": false, "deepClone": false, diff --git a/pkgs/development/tools/pip-audit/default.nix b/pkgs/development/tools/pip-audit/default.nix new file mode 100644 index 00000000000..453104014d8 --- /dev/null +++ b/pkgs/development/tools/pip-audit/default.nix @@ -0,0 +1,87 @@ +{ lib +, fetchFromGitHub +, fetchpatch +, python3 +}: + +let + py = python3.override { + packageOverrides = self: super: { + + # ansible doesn't support resolvelib > 0.6.0 and can't have an override + resolvelib = super.resolvelib.overridePythonAttrs (oldAttrs: rec { + version = "0.8.1"; + src = fetchFromGitHub { + owner = "sarugaku"; + repo = "resolvelib"; + rev = version; + sha256 = "1qpd0gg9yl0kbamlgjs9pkxd39kx511kbc92civ77v0ka5sw8ca0"; + }; + }); + }; + }; +in +with py.pkgs; + +buildPythonApplication rec { + pname = "pip-audit"; + version = "2.3.0"; + format = "pyproject"; + + src = fetchFromGitHub { + owner = "trailofbits"; + repo = pname; + rev = "v${version}"; + hash = "sha256-OaWyBswqfzbo9pqN3oa92XNbfkMGARog2yH9kIyOzIk="; + }; + + nativeBuildInputs = [ + flit-core + ]; + + propagatedBuildInputs = [ + cachecontrol + cyclonedx-python-lib + html5lib + packaging + pip-api + progress + resolvelib + ]; + + checkInputs = [ + pretend + pytestCheckHook + ]; + + pythonImportsCheck = [ + "pip_audit" + ]; + + preCheck = '' + export HOME=$(mktemp -d); + ''; + + disabledTestPaths = [ + # Tests require network access + "test/dependency_source/test_requirement.py" + "test/dependency_source/test_resolvelib.py" + "test/service/test_pypi.py" + "test/service/test_osv.py" + ]; + + disabledTests = [ + # Tests requrire network access + "test_get_pip_cache" + "test_virtual_env" + "test_pyproject_source" + "test_pyproject_source_duplicate_deps" + ]; + + meta = with lib; { + description = "Tool for scanning Python environments for known vulnerabilities"; + homepage = "https://github.com/trailofbits/pip-audit"; + license = with licenses; [ asl20 ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/tools/poetry2nix/poetry2nix/default.nix b/pkgs/development/tools/poetry2nix/poetry2nix/default.nix index 45a7e6619d1..c99e0047f0d 100644 --- a/pkgs/development/tools/poetry2nix/poetry2nix/default.nix +++ b/pkgs/development/tools/poetry2nix/poetry2nix/default.nix @@ -5,7 +5,7 @@ }: let # Poetry2nix version - version = "1.29.0"; + version = "1.29.1"; inherit (poetryLib) isCompatible readTOML moduleName; diff --git a/pkgs/development/tools/poetry2nix/poetry2nix/overrides/build-systems.json b/pkgs/development/tools/poetry2nix/poetry2nix/overrides/build-systems.json index 78e1e87f6bf..dca0936ca73 100644 --- a/pkgs/development/tools/poetry2nix/poetry2nix/overrides/build-systems.json +++ b/pkgs/development/tools/poetry2nix/poetry2nix/overrides/build-systems.json @@ -801,6 +801,9 @@ "notebook-shim": [ "jupyter-packaging" ], + "notify-py": [ + "poetry-core" + ], "notus-scanner": [ "poetry-core" ], diff --git a/pkgs/development/tools/poetry2nix/poetry2nix/overrides/default.nix b/pkgs/development/tools/poetry2nix/poetry2nix/overrides/default.nix index 83e5bb339dd..ce9805cd41e 100644 --- a/pkgs/development/tools/poetry2nix/poetry2nix/overrides/default.nix +++ b/pkgs/development/tools/poetry2nix/poetry2nix/overrides/default.nix @@ -1891,7 +1891,7 @@ lib.composeManyExtensions [ # Fix library paths postPatch = old.postPatch or "" + '' - ${self.python.pythonForBuild.interpreter} ${./shapely-rewrite.py} shapely/geos.py + ${pkgs.python3.interpreter} ${./shapely-rewrite.py} shapely/geos.py ''; } ); @@ -2346,7 +2346,7 @@ lib.composeManyExtensions [ }); wtforms = super.wtforms.overridePythonAttrs (old: { - buildInputs = (old.buildInputs or [ ]) ++ [ self.Babel ]; + buildInputs = (old.buildInputs or [ ]) ++ [ self.babel ]; }); } diff --git a/pkgs/development/tools/protoc-gen-go-vtproto/default.nix b/pkgs/development/tools/protoc-gen-go-vtproto/default.nix index 4ffc0a24264..ee1793f01ca 100644 --- a/pkgs/development/tools/protoc-gen-go-vtproto/default.nix +++ b/pkgs/development/tools/protoc-gen-go-vtproto/default.nix @@ -4,16 +4,16 @@ }: buildGoModule rec { pname = "protoc-gen-go-vtproto"; - version = "0.2.0"; + version = "0.3.0"; src = fetchFromGitHub { owner = "planetscale"; repo = "vtprotobuf"; rev = "v${version}"; - sha256 = "0kjjpfsiws4vi36ha1gajb97rwcggqw753mv2jqf09kdfszz9p63"; + sha256 = "sha256-fOF7n1WeQ3s1S+o5NbAoTUnqqk5IHtKvXCb2o8LmI5U="; }; - vendorSha256 = "01lxwlgh3y3gp22gk5qx7r60c1j63pnpi6jnri8gf2lmiiib8fdc"; + vendorSha256 = "sha256-JpSVO8h7+StLG9/dJQkmrIlh9zIHABoqP1hq+X5ajVs="; excludedPackages = [ "conformance" ]; diff --git a/pkgs/development/tools/qtcreator/default.nix b/pkgs/development/tools/qtcreator/default.nix index 57a0f188dc8..04557a27f74 100644 --- a/pkgs/development/tools/qtcreator/default.nix +++ b/pkgs/development/tools/qtcreator/default.nix @@ -20,12 +20,12 @@ in mkDerivation rec { pname = "qtcreator"; - version = "5.0.2"; + version = "5.0.3"; baseVersion = builtins.concatStringsSep "." (lib.take 2 (builtins.splitVersion version)); src = fetchurl { url = "http://download.qt-project.org/official_releases/${pname}/${baseVersion}/${version}/qt-creator-opensource-src-${version}.tar.xz"; - sha256 = "1bf07150226da46237f26f5eaa9f090ce81ed79b9bc75e0dfa6328043e360103"; + sha256 = "1sz21ijzvhf5avblikffykbqa8zdq3sbg32g2dmyxv5w211v3lvz"; }; buildInputs = [ qtbase qtscript qtquickcontrols qtdeclarative elfutils.dev ] ++ diff --git a/pkgs/development/tools/rtags/default.nix b/pkgs/development/tools/rtags/default.nix index 6693e80e116..7ee983ef6f9 100644 --- a/pkgs/development/tools/rtags/default.nix +++ b/pkgs/development/tools/rtags/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchFromGitHub, cmake, llvmPackages, openssl, apple_sdk, emacs, pkg-config }: +{ stdenv, lib, fetchFromGitHub, fetchpatch, cmake, llvmPackages, openssl, apple_sdk, emacs, pkg-config }: stdenv.mkDerivation rec { pname = "rtags"; @@ -21,6 +21,14 @@ stdenv.mkDerivation rec { ''; }; + # This should be fixed with the next verison bump + # https://github.com/Andersbakken/rtags/issues/1411 + patches = [(fetchpatch { + name = "define-obsolete-function-alias.patch"; + url = "https://github.com/Andersbakken/rtags/commit/63f18acb21e664fd92fbc19465f0b5df085b5e93.patch"; + sha256 = "sha256-dmEPtnk8Pylmf5479ovHKItRZ+tJuOWuYOQbWB/si/Y="; + })]; + preConfigure = '' export LIBCLANG_CXXFLAGS="-isystem ${llvmPackages.clang.cc}/include $(llvm-config --cxxflags) -fexceptions" \ LIBCLANG_LIBDIR="${llvmPackages.clang.cc}/lib" diff --git a/pkgs/development/tools/rust/cargo-deny/default.nix b/pkgs/development/tools/rust/cargo-deny/default.nix index 8c05a5fc9a0..ed625cb229e 100644 --- a/pkgs/development/tools/rust/cargo-deny/default.nix +++ b/pkgs/development/tools/rust/cargo-deny/default.nix @@ -11,19 +11,19 @@ rustPlatform.buildRustPackage rec { pname = "cargo-deny"; - version = "0.11.4"; + version = "0.12.1"; src = fetchFromGitHub { owner = "EmbarkStudios"; repo = pname; rev = version; - sha256 = "sha256-lwVoV+zxJfmWvlt14FFmxPCdKCoojVvRVGS1rq1QF44="; + sha256 = "sha256-w64fdjKXiCaM+U28Hte+I0LPqmGKxbCVRUyhNWcVyTc="; }; # enable pkg-config feature of zstd cargoPatches = [ ./zstd-pkg-config.patch ]; - cargoSha256 = "sha256-I+kpHaCxuNzq8+GdqQEuSdE4aD+/lBccUrSf+XW2OKE="; + cargoSha256 = "sha256-K9Ab4L/wnpUqe+gLKhtHX4fOgWXv6ZL9faa58hzdq/0="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/tools/rust/cargo-expand/default.nix b/pkgs/development/tools/rust/cargo-expand/default.nix index de75edf5e73..d448b9a88f8 100644 --- a/pkgs/development/tools/rust/cargo-expand/default.nix +++ b/pkgs/development/tools/rust/cargo-expand/default.nix @@ -7,16 +7,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-expand"; - version = "1.0.19"; + version = "1.0.21"; src = fetchFromGitHub { owner = "dtolnay"; repo = pname; rev = version; - sha256 = "sha256-+LKZ0pbSlqY8rbz96HZ59XYKsSJDMOrJMxblXNj74Yw="; + sha256 = "sha256-hxG7e5JBDv79eA7IQEdU8kpvE0B69Gqc+aPdCoc6Uf4="; }; - cargoSha256 = "sha256-ZEHc67jgLSZV6JH5/owAGTxxnbnYnx2fIUf0mQ14qvg="; + cargoSha256 = "sha256-7CMNJb/HGHPP4CIBEYK+2HC/JAce25qGI86NkSvyxos="; buildInputs = lib.optional stdenv.isDarwin libiconv; diff --git a/pkgs/development/tools/rust/rust-analyzer/default.nix b/pkgs/development/tools/rust/rust-analyzer/default.nix index acacdcefb41..861a4075990 100644 --- a/pkgs/development/tools/rust/rust-analyzer/default.nix +++ b/pkgs/development/tools/rust/rust-analyzer/default.nix @@ -1,5 +1,6 @@ { lib , stdenv +, callPackage , fetchFromGitHub , rustPlatform , CoreServices @@ -11,14 +12,14 @@ rustPlatform.buildRustPackage rec { pname = "rust-analyzer-unwrapped"; - version = "2022-05-02"; - cargoSha256 = "sha256-uZCUruIBTNTKYWYb8xQgJ6FsKlRi+Sh5n7m7aVk+hHQ="; + version = "2022-05-17"; + cargoSha256 = "sha256-H0nuS56mvo5YUAUOsEnR4Cv3iFKixoHK83BcM1PFMA8="; src = fetchFromGitHub { owner = "rust-lang"; repo = "rust-analyzer"; rev = version; - sha256 = "sha256-5kAbd/tTc9vkr27ar44hnpXdS0vQg0OLJUMlp0FBjqA="; + sha256 = "sha256-vrVpgQYUuJPgK1NMb1nxlCdxjoYo40YkUbZpH2Z2mwM="; }; patches = [ @@ -54,7 +55,11 @@ rustPlatform.buildRustPackage rec { runHook postInstallCheck ''; - passthru.updateScript = ./update.sh; + passthru = { + updateScript = ./update.sh; + # FIXME: Pass overrided `rust-analyzer` once `buildRustPackage` also implements #119942 + tests.neovim-lsp = callPackage ./test-neovim-lsp.nix { }; + }; meta = with lib; { description = "A modular compiler frontend for the Rust language"; diff --git a/pkgs/development/tools/rust/rust-analyzer/test-neovim-lsp.nix b/pkgs/development/tools/rust/rust-analyzer/test-neovim-lsp.nix new file mode 100644 index 00000000000..6782a7418a6 --- /dev/null +++ b/pkgs/development/tools/rust/rust-analyzer/test-neovim-lsp.nix @@ -0,0 +1,49 @@ +{ runCommandNoCC, cargo, neovim, rust-analyzer, rustc }: +runCommandNoCC "test-neovim-rust-analyzer" { + nativeBuildInputs = [ cargo neovim rust-analyzer rustc ]; + + testRustSrc = /* rust */ '' + fn main() { + let mut var = vec![None]; + var.push(Some("hello".to_owned())); + } + ''; + + nvimConfig = /* lua */ '' + vim.lsp.buf_attach_client(vim.api.nvim_get_current_buf(), vim.lsp.start_client({ + cmd = { "rust-analyzer" }, + handlers = { + ["$/progress"] = function(_, msg, ctx) + if msg.token == "rustAnalyzer/Indexing" and msg.value.kind == "end" then + vim.cmd("goto 23") -- let mut |var =... + vim.lsp.buf.hover() + end + end, + ["textDocument/hover"] = function(_, msg, ctx) + -- Keep newlines. + io.write(msg.contents.value) + vim.cmd("q") + end, + }, + on_error = function(code) + print("error: " .. code) + vim.cmd("q") + end + })) + ''; + +} '' + # neovim requires a writable HOME. + export HOME="$(pwd)" + + cargo new --bin test-rust-analyzer + cd test-rust-analyzer + cat <<<"$testRustSrc" >src/main.rs + cat <<<"$nvimConfig" >script.lua + + # `-u` doesn't work + result="$(nvim --headless +'lua dofile("script.lua")' src/main.rs)" + echo "$result" + [[ "$result" == *"var: Vec<Option<String>>"* ]] + touch $out +'' diff --git a/pkgs/development/tools/sumneko-lua-language-server/default.nix b/pkgs/development/tools/sumneko-lua-language-server/default.nix index 27606f998d5..9e73c566ef8 100644 --- a/pkgs/development/tools/sumneko-lua-language-server/default.nix +++ b/pkgs/development/tools/sumneko-lua-language-server/default.nix @@ -4,13 +4,13 @@ let in stdenv.mkDerivation rec { pname = "sumneko-lua-language-server"; - version = "3.2.1"; + version = "3.2.3"; src = fetchFromGitHub { owner = "sumneko"; repo = "lua-language-server"; rev = version; - sha256 = "sha256-rxferVxTWmclviDshHhBmbCezOI+FvcfUW3gAkBQNHQ="; + sha256 = "sha256-n54PWkiB+vXAqIOZ5FOTUNgGhAdBs81Q1WYxJ2XIb8o="; fetchSubmodules = true; }; @@ -24,10 +24,10 @@ stdenv.mkDerivation rec { darwin.apple_sdk.frameworks.Foundation ]; - # Disable cwd support on darwin, because it requires macOS>=10.15 - preConfigure = lib.optionalString stdenv.isDarwin '' + # Disable cwd support on x86 darwin, because it requires macOS>=10.15 + preConfigure = lib.optionalString (stdenv.isDarwin && stdenv.isx86_64) '' for file in 3rd/bee.lua/bee/subprocess/subprocess_posix.cpp 3rd/luamake/3rd/bee.lua/bee/subprocess/subprocess_posix.cpp; do - substituteInPlace $file --replace '#define SUPPORT_CWD 1' "" + substituteInPlace $file --replace '#define USE_POSIX_SPAWN 1' "" done ''; diff --git a/pkgs/development/tools/systemfd/Cargo.nix b/pkgs/development/tools/systemfd/Cargo.nix deleted file mode 100644 index b6687f1e929..00000000000 --- a/pkgs/development/tools/systemfd/Cargo.nix +++ /dev/null @@ -1,215 +0,0 @@ -# Generated by carnix 0.10.0: carnix generate-nix -{ lib, buildPlatform, buildRustCrate, buildRustCrateHelpers, cratesIO, fetchgit }: -with buildRustCrateHelpers; -let inherit (lib.lists) fold; - inherit (lib.attrsets) recursiveUpdate; -in -rec { - crates = cratesIO; - systemfd = crates.crates.systemfd."0.3.0" deps; - __all = [ (systemfd {}) ]; - deps.aho_corasick."0.6.4" = { - memchr = "2.0.1"; - }; - deps.ansi_term."0.11.0" = { - winapi = "0.3.4"; - }; - deps.atty."0.2.10" = { - termion = "1.5.1"; - libc = "0.2.40"; - winapi = "0.3.4"; - }; - deps.backtrace."0.3.7" = { - cfg_if = "0.1.3"; - rustc_demangle = "0.1.8"; - backtrace_sys = "0.1.16"; - libc = "0.2.40"; - winapi = "0.3.4"; - }; - deps.backtrace_sys."0.1.16" = { - libc = "0.2.40"; - cc = "1.0.15"; - }; - deps.bitflags."1.0.3" = {}; - deps.byteorder."1.2.3" = {}; - deps.bytes."0.4.7" = { - byteorder = "1.2.3"; - iovec = "0.1.2"; - }; - deps.cc."1.0.15" = {}; - deps.cfg_if."0.1.3" = {}; - deps.clap."2.31.2" = { - atty = "0.2.10"; - bitflags = "1.0.3"; - strsim = "0.7.0"; - textwrap = "0.9.0"; - unicode_width = "0.1.4"; - vec_map = "0.8.1"; - ansi_term = "0.11.0"; - }; - deps.clicolors_control."0.2.0" = { - lazy_static = "0.2.11"; - libc = "0.2.40"; - kernel32_sys = "0.2.2"; - winapi = "0.3.4"; - }; - deps.console."0.6.1" = { - clicolors_control = "0.2.0"; - lazy_static = "0.2.11"; - libc = "0.2.40"; - parking_lot = "0.5.5"; - regex = "0.2.11"; - unicode_width = "0.1.4"; - termios = "0.2.2"; - winapi = "0.3.4"; - }; - deps.failure."0.1.1" = { - backtrace = "0.3.7"; - failure_derive = "0.1.1"; - }; - deps.failure_derive."0.1.1" = { - quote = "0.3.15"; - syn = "0.11.11"; - synstructure = "0.6.1"; - }; - deps.fuchsia_zircon."0.3.3" = { - bitflags = "1.0.3"; - fuchsia_zircon_sys = "0.3.3"; - }; - deps.fuchsia_zircon_sys."0.3.3" = {}; - deps.gcc."0.3.54" = {}; - deps.iovec."0.1.2" = { - libc = "0.2.40"; - winapi = "0.2.8"; - }; - deps.kernel32_sys."0.2.2" = { - winapi = "0.2.8"; - winapi_build = "0.1.1"; - }; - deps.lazy_static."0.2.11" = {}; - deps.lazy_static."1.0.0" = {}; - deps.libc."0.2.40" = {}; - deps.memchr."2.0.1" = { - libc = "0.2.40"; - }; - deps.nix."0.10.0" = { - bitflags = "1.0.3"; - bytes = "0.4.7"; - cfg_if = "0.1.3"; - libc = "0.2.40"; - void = "1.0.2"; - }; - deps.owning_ref."0.3.3" = { - stable_deref_trait = "1.0.0"; - }; - deps.parking_lot."0.5.5" = { - owning_ref = "0.3.3"; - parking_lot_core = "0.2.14"; - }; - deps.parking_lot_core."0.2.14" = { - rand = "0.4.2"; - smallvec = "0.6.1"; - libc = "0.2.40"; - winapi = "0.3.4"; - }; - deps.quote."0.3.15" = {}; - deps.rand."0.4.2" = { - fuchsia_zircon = "0.3.3"; - libc = "0.2.40"; - winapi = "0.3.4"; - }; - deps.redox_syscall."0.1.37" = {}; - deps.redox_termios."0.1.1" = { - redox_syscall = "0.1.37"; - }; - deps.regex."0.2.11" = { - aho_corasick = "0.6.4"; - memchr = "2.0.1"; - regex_syntax = "0.5.6"; - thread_local = "0.3.5"; - utf8_ranges = "1.0.0"; - }; - deps.regex."1.0.0" = { - aho_corasick = "0.6.4"; - memchr = "2.0.1"; - regex_syntax = "0.6.0"; - thread_local = "0.3.5"; - utf8_ranges = "1.0.0"; - }; - deps.regex_syntax."0.5.6" = { - ucd_util = "0.1.1"; - }; - deps.regex_syntax."0.6.0" = { - ucd_util = "0.1.1"; - }; - deps.rustc_demangle."0.1.8" = {}; - deps.smallvec."0.6.1" = {}; - deps.socket2."0.3.5" = { - cfg_if = "0.1.3"; - libc = "0.2.40"; - winapi = "0.3.4"; - }; - deps.stable_deref_trait."1.0.0" = {}; - deps.strsim."0.7.0" = {}; - deps.syn."0.11.11" = { - quote = "0.3.15"; - synom = "0.11.3"; - unicode_xid = "0.0.4"; - }; - deps.synom."0.11.3" = { - unicode_xid = "0.0.4"; - }; - deps.synstructure."0.6.1" = { - quote = "0.3.15"; - syn = "0.11.11"; - }; - deps.systemfd."0.3.0" = { - clap = "2.31.2"; - console = "0.6.1"; - failure = "0.1.1"; - failure_derive = "0.1.1"; - lazy_static = "1.0.0"; - libc = "0.2.40"; - regex = "1.0.0"; - nix = "0.10.0"; - socket2 = "0.3.5"; - uuid = "0.6.3"; - winapi = "0.3.4"; - }; - deps.termion."1.5.1" = { - libc = "0.2.40"; - redox_syscall = "0.1.37"; - redox_termios = "0.1.1"; - }; - deps.termios."0.2.2" = { - libc = "0.2.40"; - }; - deps.textwrap."0.9.0" = { - unicode_width = "0.1.4"; - }; - deps.thread_local."0.3.5" = { - lazy_static = "1.0.0"; - unreachable = "1.0.0"; - }; - deps.ucd_util."0.1.1" = {}; - deps.unicode_width."0.1.4" = {}; - deps.unicode_xid."0.0.4" = {}; - deps.unreachable."1.0.0" = { - void = "1.0.2"; - }; - deps.utf8_ranges."1.0.0" = {}; - deps.uuid."0.6.3" = { - cfg_if = "0.1.3"; - rand = "0.4.2"; - }; - deps.vec_map."0.8.1" = {}; - deps.void."1.0.2" = {}; - deps.winapi."0.2.8" = {}; - deps.winapi."0.3.4" = { - winapi_i686_pc_windows_gnu = "0.4.0"; - winapi_x86_64_pc_windows_gnu = "0.4.0"; - }; - deps.winapi_build."0.1.1" = {}; - deps.winapi_i686_pc_windows_gnu."0.4.0" = {}; - deps.winapi_x86_64_pc_windows_gnu."0.4.0" = {}; -} diff --git a/pkgs/development/tools/systemfd/crates-io.list b/pkgs/development/tools/systemfd/crates-io.list deleted file mode 100644 index 0b8371f68a1..00000000000 --- a/pkgs/development/tools/systemfd/crates-io.list +++ /dev/null @@ -1,62 +0,0 @@ -aho-corasick-0.6.4 -ansi_term-0.11.0 -atty-0.2.10 -backtrace-0.3.7 -backtrace-sys-0.1.16 -bitflags-1.0.3 -byteorder-1.2.3 -bytes-0.4.7 -cc-1.0.15 -cfg-if-0.1.3 -clap-2.31.2 -clicolors-control-0.2.0 -console-0.6.1 -failure-0.1.1 -failure_derive-0.1.1 -fuchsia-zircon-0.3.3 -fuchsia-zircon-sys-0.3.3 -gcc-0.3.54 -iovec-0.1.2 -kernel32-sys-0.2.2 -lazy_static-0.2.11 -lazy_static-1.0.0 -libc-0.2.40 -memchr-2.0.1 -nix-0.10.0 -owning_ref-0.3.3 -parking_lot-0.5.5 -parking_lot_core-0.2.14 -quote-0.3.15 -rand-0.4.2 -redox_syscall-0.1.37 -redox_termios-0.1.1 -regex-0.2.11 -regex-1.0.0 -regex-syntax-0.5.6 -regex-syntax-0.6.0 -rustc-demangle-0.1.8 -smallvec-0.6.1 -socket2-0.3.5 -stable_deref_trait-1.0.0 -strsim-0.7.0 -syn-0.11.11 -synom-0.11.3 -synstructure-0.6.1 -systemfd-0.3.0 -termion-1.5.1 -termios-0.2.2 -textwrap-0.9.0 -thread_local-0.3.5 -ucd-util-0.1.1 -unicode-width-0.1.4 -unicode-xid-0.0.4 -unreachable-1.0.0 -utf8-ranges-1.0.0 -uuid-0.6.3 -vec_map-0.8.1 -void-1.0.2 -winapi-0.2.8 -winapi-0.3.4 -winapi-build-0.1.1 -winapi-i686-pc-windows-gnu-0.4.0 -winapi-x86_64-pc-windows-gnu-0.4.0 diff --git a/pkgs/development/tools/systemfd/crates-io.nix b/pkgs/development/tools/systemfd/crates-io.nix deleted file mode 100644 index 7e7b737b8c8..00000000000 --- a/pkgs/development/tools/systemfd/crates-io.nix +++ /dev/null @@ -1,1890 +0,0 @@ -{ lib, buildRustCrate, buildRustCrateHelpers }: -with buildRustCrateHelpers; -let inherit (lib.lists) fold; - inherit (lib.attrsets) recursiveUpdate; -in -rec { - -# aho-corasick-0.6.4 - - crates.aho_corasick."0.6.4" = deps: { features?(features_.aho_corasick."0.6.4" deps {}) }: buildRustCrate { - crateName = "aho-corasick"; - version = "0.6.4"; - description = "Fast multiple substring searching with finite state machines."; - authors = [ "Andrew Gallant <jamslam@gmail.com>" ]; - sha256 = "189v919mp6rzzgjp1khpn4zlq8ls81gh43x1lmc8kbkagdlpq888"; - libName = "aho_corasick"; - crateBin = - [{ name = "aho-corasick-dot"; }]; - dependencies = mapFeatures features ([ - (crates."memchr"."${deps."aho_corasick"."0.6.4"."memchr"}" deps) - ]); - }; - features_.aho_corasick."0.6.4" = deps: f: updateFeatures f (rec { - aho_corasick."0.6.4".default = (f.aho_corasick."0.6.4".default or true); - memchr."${deps.aho_corasick."0.6.4".memchr}".default = true; - }) [ - (features_.memchr."${deps."aho_corasick"."0.6.4"."memchr"}" deps) - ]; - - -# end -# ansi_term-0.11.0 - - crates.ansi_term."0.11.0" = deps: { features?(features_.ansi_term."0.11.0" deps {}) }: buildRustCrate { - crateName = "ansi_term"; - version = "0.11.0"; - description = "Library for ANSI terminal colours and styles (bold, underline)"; - authors = [ "ogham@bsago.me" "Ryan Scheel (Havvy) <ryan.havvy@gmail.com>" "Josh Triplett <josh@joshtriplett.org>" ]; - sha256 = "08fk0p2xvkqpmz3zlrwnf6l8sj2vngw464rvzspzp31sbgxbwm4v"; - dependencies = (if kernel == "windows" then mapFeatures features ([ - (crates."winapi"."${deps."ansi_term"."0.11.0"."winapi"}" deps) - ]) else []); - }; - features_.ansi_term."0.11.0" = deps: f: updateFeatures f (rec { - ansi_term."0.11.0".default = (f.ansi_term."0.11.0".default or true); - winapi = fold recursiveUpdate {} [ - { "${deps.ansi_term."0.11.0".winapi}"."consoleapi" = true; } - { "${deps.ansi_term."0.11.0".winapi}"."errhandlingapi" = true; } - { "${deps.ansi_term."0.11.0".winapi}"."processenv" = true; } - { "${deps.ansi_term."0.11.0".winapi}".default = true; } - ]; - }) [ - (features_.winapi."${deps."ansi_term"."0.11.0"."winapi"}" deps) - ]; - - -# end -# atty-0.2.10 - - crates.atty."0.2.10" = deps: { features?(features_.atty."0.2.10" deps {}) }: buildRustCrate { - crateName = "atty"; - version = "0.2.10"; - description = "A simple interface for querying atty"; - authors = [ "softprops <d.tangren@gmail.com>" ]; - sha256 = "1h26lssj8rwaz0xhwwm5a645r49yly211amfmd243m3m0jl49i2c"; - dependencies = (if kernel == "redox" then mapFeatures features ([ - (crates."termion"."${deps."atty"."0.2.10"."termion"}" deps) - ]) else []) - ++ (if (kernel == "linux" || kernel == "darwin") then mapFeatures features ([ - (crates."libc"."${deps."atty"."0.2.10"."libc"}" deps) - ]) else []) - ++ (if kernel == "windows" then mapFeatures features ([ - (crates."winapi"."${deps."atty"."0.2.10"."winapi"}" deps) - ]) else []); - }; - features_.atty."0.2.10" = deps: f: updateFeatures f (rec { - atty."0.2.10".default = (f.atty."0.2.10".default or true); - libc."${deps.atty."0.2.10".libc}".default = (f.libc."${deps.atty."0.2.10".libc}".default or false); - termion."${deps.atty."0.2.10".termion}".default = true; - winapi = fold recursiveUpdate {} [ - { "${deps.atty."0.2.10".winapi}"."consoleapi" = true; } - { "${deps.atty."0.2.10".winapi}"."minwinbase" = true; } - { "${deps.atty."0.2.10".winapi}"."minwindef" = true; } - { "${deps.atty."0.2.10".winapi}"."processenv" = true; } - { "${deps.atty."0.2.10".winapi}"."winbase" = true; } - { "${deps.atty."0.2.10".winapi}".default = true; } - ]; - }) [ - (features_.termion."${deps."atty"."0.2.10"."termion"}" deps) - (features_.libc."${deps."atty"."0.2.10"."libc"}" deps) - (features_.winapi."${deps."atty"."0.2.10"."winapi"}" deps) - ]; - - -# end -# backtrace-0.3.7 - - crates.backtrace."0.3.7" = deps: { features?(features_.backtrace."0.3.7" deps {}) }: buildRustCrate { - crateName = "backtrace"; - version = "0.3.7"; - description = "A library to acquire a stack trace (backtrace) at runtime in a Rust program.\n"; - authors = [ "Alex Crichton <alex@alexcrichton.com>" "The Rust Project Developers" ]; - sha256 = "00zzcgacv516dlhxkrdw4c8vsx3bwkkdrrzi5pnxrhpd87ambjwn"; - dependencies = mapFeatures features ([ - (crates."cfg_if"."${deps."backtrace"."0.3.7"."cfg_if"}" deps) - (crates."rustc_demangle"."${deps."backtrace"."0.3.7"."rustc_demangle"}" deps) - ]) - ++ (if (kernel == "linux" || kernel == "darwin") && !(kernel == "fuchsia") && !(kernel == "emscripten") && !(kernel == "darwin") && !(kernel == "ios") then mapFeatures features ([ - ] - ++ (if features.backtrace."0.3.7".backtrace-sys or false then [ (crates.backtrace_sys."${deps."backtrace"."0.3.7".backtrace_sys}" deps) ] else [])) else []) - ++ (if (kernel == "linux" || kernel == "darwin") then mapFeatures features ([ - (crates."libc"."${deps."backtrace"."0.3.7"."libc"}" deps) - ]) else []) - ++ (if kernel == "windows" then mapFeatures features ([ - ] - ++ (if features.backtrace."0.3.7".winapi or false then [ (crates.winapi."${deps."backtrace"."0.3.7".winapi}" deps) ] else [])) else []); - features = mkFeatures (features."backtrace"."0.3.7" or {}); - }; - features_.backtrace."0.3.7" = deps: f: updateFeatures f (rec { - backtrace = fold recursiveUpdate {} [ - { "0.3.7"."addr2line" = - (f.backtrace."0.3.7"."addr2line" or false) || - (f.backtrace."0.3.7".gimli-symbolize or false) || - (backtrace."0.3.7"."gimli-symbolize" or false); } - { "0.3.7"."backtrace-sys" = - (f.backtrace."0.3.7"."backtrace-sys" or false) || - (f.backtrace."0.3.7".libbacktrace or false) || - (backtrace."0.3.7"."libbacktrace" or false); } - { "0.3.7"."coresymbolication" = - (f.backtrace."0.3.7"."coresymbolication" or false) || - (f.backtrace."0.3.7".default or false) || - (backtrace."0.3.7"."default" or false); } - { "0.3.7"."dbghelp" = - (f.backtrace."0.3.7"."dbghelp" or false) || - (f.backtrace."0.3.7".default or false) || - (backtrace."0.3.7"."default" or false); } - { "0.3.7"."dladdr" = - (f.backtrace."0.3.7"."dladdr" or false) || - (f.backtrace."0.3.7".default or false) || - (backtrace."0.3.7"."default" or false); } - { "0.3.7"."findshlibs" = - (f.backtrace."0.3.7"."findshlibs" or false) || - (f.backtrace."0.3.7".gimli-symbolize or false) || - (backtrace."0.3.7"."gimli-symbolize" or false); } - { "0.3.7"."gimli" = - (f.backtrace."0.3.7"."gimli" or false) || - (f.backtrace."0.3.7".gimli-symbolize or false) || - (backtrace."0.3.7"."gimli-symbolize" or false); } - { "0.3.7"."libbacktrace" = - (f.backtrace."0.3.7"."libbacktrace" or false) || - (f.backtrace."0.3.7".default or false) || - (backtrace."0.3.7"."default" or false); } - { "0.3.7"."libunwind" = - (f.backtrace."0.3.7"."libunwind" or false) || - (f.backtrace."0.3.7".default or false) || - (backtrace."0.3.7"."default" or false); } - { "0.3.7"."memmap" = - (f.backtrace."0.3.7"."memmap" or false) || - (f.backtrace."0.3.7".gimli-symbolize or false) || - (backtrace."0.3.7"."gimli-symbolize" or false); } - { "0.3.7"."object" = - (f.backtrace."0.3.7"."object" or false) || - (f.backtrace."0.3.7".gimli-symbolize or false) || - (backtrace."0.3.7"."gimli-symbolize" or false); } - { "0.3.7"."rustc-serialize" = - (f.backtrace."0.3.7"."rustc-serialize" or false) || - (f.backtrace."0.3.7".serialize-rustc or false) || - (backtrace."0.3.7"."serialize-rustc" or false); } - { "0.3.7"."serde" = - (f.backtrace."0.3.7"."serde" or false) || - (f.backtrace."0.3.7".serialize-serde or false) || - (backtrace."0.3.7"."serialize-serde" or false); } - { "0.3.7"."serde_derive" = - (f.backtrace."0.3.7"."serde_derive" or false) || - (f.backtrace."0.3.7".serialize-serde or false) || - (backtrace."0.3.7"."serialize-serde" or false); } - { "0.3.7"."winapi" = - (f.backtrace."0.3.7"."winapi" or false) || - (f.backtrace."0.3.7".dbghelp or false) || - (backtrace."0.3.7"."dbghelp" or false); } - { "0.3.7".default = (f.backtrace."0.3.7".default or true); } - ]; - backtrace_sys."${deps.backtrace."0.3.7".backtrace_sys}".default = true; - cfg_if."${deps.backtrace."0.3.7".cfg_if}".default = true; - libc."${deps.backtrace."0.3.7".libc}".default = true; - rustc_demangle."${deps.backtrace."0.3.7".rustc_demangle}".default = true; - winapi = fold recursiveUpdate {} [ - { "${deps.backtrace."0.3.7".winapi}"."dbghelp" = true; } - { "${deps.backtrace."0.3.7".winapi}"."minwindef" = true; } - { "${deps.backtrace."0.3.7".winapi}"."processthreadsapi" = true; } - { "${deps.backtrace."0.3.7".winapi}"."std" = true; } - { "${deps.backtrace."0.3.7".winapi}"."winnt" = true; } - { "${deps.backtrace."0.3.7".winapi}".default = true; } - ]; - }) [ - (features_.cfg_if."${deps."backtrace"."0.3.7"."cfg_if"}" deps) - (features_.rustc_demangle."${deps."backtrace"."0.3.7"."rustc_demangle"}" deps) - (features_.backtrace_sys."${deps."backtrace"."0.3.7"."backtrace_sys"}" deps) - (features_.libc."${deps."backtrace"."0.3.7"."libc"}" deps) - (features_.winapi."${deps."backtrace"."0.3.7"."winapi"}" deps) - ]; - - -# end -# backtrace-sys-0.1.16 - - crates.backtrace_sys."0.1.16" = deps: { features?(features_.backtrace_sys."0.1.16" deps {}) }: buildRustCrate { - crateName = "backtrace-sys"; - version = "0.1.16"; - description = "Bindings to the libbacktrace gcc library\n"; - authors = [ "Alex Crichton <alex@alexcrichton.com>" ]; - sha256 = "1cn2c8q3dn06crmnk0p62czkngam4l8nf57wy33nz1y5g25pszwy"; - build = "build.rs"; - dependencies = mapFeatures features ([ - (crates."libc"."${deps."backtrace_sys"."0.1.16"."libc"}" deps) - ]); - - buildDependencies = mapFeatures features ([ - (crates."cc"."${deps."backtrace_sys"."0.1.16"."cc"}" deps) - ]); - }; - features_.backtrace_sys."0.1.16" = deps: f: updateFeatures f (rec { - backtrace_sys."0.1.16".default = (f.backtrace_sys."0.1.16".default or true); - cc."${deps.backtrace_sys."0.1.16".cc}".default = true; - libc."${deps.backtrace_sys."0.1.16".libc}".default = true; - }) [ - (features_.libc."${deps."backtrace_sys"."0.1.16"."libc"}" deps) - (features_.cc."${deps."backtrace_sys"."0.1.16"."cc"}" deps) - ]; - - -# end -# bitflags-1.0.3 - - crates.bitflags."1.0.3" = deps: { features?(features_.bitflags."1.0.3" deps {}) }: buildRustCrate { - crateName = "bitflags"; - version = "1.0.3"; - description = "A macro to generate structures which behave like bitflags.\n"; - authors = [ "The Rust Project Developers" ]; - sha256 = "162p4w4h1ad76awq6b5yivmls3d50m9cl27d8g588lsps6g8s5rw"; - features = mkFeatures (features."bitflags"."1.0.3" or {}); - }; - features_.bitflags."1.0.3" = deps: f: updateFeatures f (rec { - bitflags."1.0.3".default = (f.bitflags."1.0.3".default or true); - }) []; - - -# end -# byteorder-1.2.3 - - crates.byteorder."1.2.3" = deps: { features?(features_.byteorder."1.2.3" deps {}) }: buildRustCrate { - crateName = "byteorder"; - version = "1.2.3"; - description = "Library for reading/writing numbers in big-endian and little-endian."; - authors = [ "Andrew Gallant <jamslam@gmail.com>" ]; - sha256 = "1xghv5f5rydzsam8lnfqhfk090i8a1knb77ikbs0ik44bvrw2ij3"; - features = mkFeatures (features."byteorder"."1.2.3" or {}); - }; - features_.byteorder."1.2.3" = deps: f: updateFeatures f (rec { - byteorder = fold recursiveUpdate {} [ - { "1.2.3"."std" = - (f.byteorder."1.2.3"."std" or false) || - (f.byteorder."1.2.3".default or false) || - (byteorder."1.2.3"."default" or false); } - { "1.2.3".default = (f.byteorder."1.2.3".default or true); } - ]; - }) []; - - -# end -# bytes-0.4.7 - - crates.bytes."0.4.7" = deps: { features?(features_.bytes."0.4.7" deps {}) }: buildRustCrate { - crateName = "bytes"; - version = "0.4.7"; - description = "Types and traits for working with bytes"; - authors = [ "Carl Lerche <me@carllerche.com>" ]; - sha256 = "1icr74r099d0c0a2q1pz51182z7911g92h2j60al351kz78dzv3f"; - dependencies = mapFeatures features ([ - (crates."byteorder"."${deps."bytes"."0.4.7"."byteorder"}" deps) - (crates."iovec"."${deps."bytes"."0.4.7"."iovec"}" deps) - ]); - }; - features_.bytes."0.4.7" = deps: f: updateFeatures f (rec { - byteorder."${deps.bytes."0.4.7".byteorder}".default = true; - bytes."0.4.7".default = (f.bytes."0.4.7".default or true); - iovec."${deps.bytes."0.4.7".iovec}".default = true; - }) [ - (features_.byteorder."${deps."bytes"."0.4.7"."byteorder"}" deps) - (features_.iovec."${deps."bytes"."0.4.7"."iovec"}" deps) - ]; - - -# end -# cc-1.0.15 - - crates.cc."1.0.15" = deps: { features?(features_.cc."1.0.15" deps {}) }: buildRustCrate { - crateName = "cc"; - version = "1.0.15"; - description = "A build-time dependency for Cargo build scripts to assist in invoking the native\nC compiler to compile native C code into a static archive to be linked into Rust\ncode.\n"; - authors = [ "Alex Crichton <alex@alexcrichton.com>" ]; - sha256 = "1zmcv4zf888byhay2qakqlc9b8snhy5ccfs35zb6flywmlj8f2c0"; - dependencies = mapFeatures features ([ -]); - features = mkFeatures (features."cc"."1.0.15" or {}); - }; - features_.cc."1.0.15" = deps: f: updateFeatures f (rec { - cc = fold recursiveUpdate {} [ - { "1.0.15"."rayon" = - (f.cc."1.0.15"."rayon" or false) || - (f.cc."1.0.15".parallel or false) || - (cc."1.0.15"."parallel" or false); } - { "1.0.15".default = (f.cc."1.0.15".default or true); } - ]; - }) []; - - -# end -# cfg-if-0.1.3 - - crates.cfg_if."0.1.3" = deps: { features?(features_.cfg_if."0.1.3" deps {}) }: buildRustCrate { - crateName = "cfg-if"; - version = "0.1.3"; - description = "A macro to ergonomically define an item depending on a large number of #[cfg]\nparameters. Structured like an if-else chain, the first matching branch is the\nitem that gets emitted.\n"; - authors = [ "Alex Crichton <alex@alexcrichton.com>" ]; - sha256 = "0hphfz5qg40gr5p18gmgy2rzkqj019lii3n0dy3s0a6lnl9106k6"; - }; - features_.cfg_if."0.1.3" = deps: f: updateFeatures f (rec { - cfg_if."0.1.3".default = (f.cfg_if."0.1.3".default or true); - }) []; - - -# end -# clap-2.31.2 - - crates.clap."2.31.2" = deps: { features?(features_.clap."2.31.2" deps {}) }: buildRustCrate { - crateName = "clap"; - version = "2.31.2"; - description = "A simple to use, efficient, and full featured Command Line Argument Parser\n"; - authors = [ "Kevin K. <kbknapp@gmail.com>" ]; - sha256 = "0r24ziw85a8y1sf2l21y4mvv5qan3rjafcshpyfsjfadqfxsij72"; - dependencies = mapFeatures features ([ - (crates."bitflags"."${deps."clap"."2.31.2"."bitflags"}" deps) - (crates."textwrap"."${deps."clap"."2.31.2"."textwrap"}" deps) - (crates."unicode_width"."${deps."clap"."2.31.2"."unicode_width"}" deps) - ] - ++ (if features.clap."2.31.2".atty or false then [ (crates.atty."${deps."clap"."2.31.2".atty}" deps) ] else []) - ++ (if features.clap."2.31.2".strsim or false then [ (crates.strsim."${deps."clap"."2.31.2".strsim}" deps) ] else []) - ++ (if features.clap."2.31.2".vec_map or false then [ (crates.vec_map."${deps."clap"."2.31.2".vec_map}" deps) ] else [])) - ++ (if !(kernel == "windows") then mapFeatures features ([ - ] - ++ (if features.clap."2.31.2".ansi_term or false then [ (crates.ansi_term."${deps."clap"."2.31.2".ansi_term}" deps) ] else [])) else []); - features = mkFeatures (features."clap"."2.31.2" or {}); - }; - features_.clap."2.31.2" = deps: f: updateFeatures f (rec { - ansi_term."${deps.clap."2.31.2".ansi_term}".default = true; - atty."${deps.clap."2.31.2".atty}".default = true; - bitflags."${deps.clap."2.31.2".bitflags}".default = true; - clap = fold recursiveUpdate {} [ - { "2.31.2"."ansi_term" = - (f.clap."2.31.2"."ansi_term" or false) || - (f.clap."2.31.2".color or false) || - (clap."2.31.2"."color" or false); } - { "2.31.2"."atty" = - (f.clap."2.31.2"."atty" or false) || - (f.clap."2.31.2".color or false) || - (clap."2.31.2"."color" or false); } - { "2.31.2"."clippy" = - (f.clap."2.31.2"."clippy" or false) || - (f.clap."2.31.2".lints or false) || - (clap."2.31.2"."lints" or false); } - { "2.31.2"."color" = - (f.clap."2.31.2"."color" or false) || - (f.clap."2.31.2".default or false) || - (clap."2.31.2"."default" or false); } - { "2.31.2"."strsim" = - (f.clap."2.31.2"."strsim" or false) || - (f.clap."2.31.2".suggestions or false) || - (clap."2.31.2"."suggestions" or false); } - { "2.31.2"."suggestions" = - (f.clap."2.31.2"."suggestions" or false) || - (f.clap."2.31.2".default or false) || - (clap."2.31.2"."default" or false); } - { "2.31.2"."term_size" = - (f.clap."2.31.2"."term_size" or false) || - (f.clap."2.31.2".wrap_help or false) || - (clap."2.31.2"."wrap_help" or false); } - { "2.31.2"."vec_map" = - (f.clap."2.31.2"."vec_map" or false) || - (f.clap."2.31.2".default or false) || - (clap."2.31.2"."default" or false); } - { "2.31.2"."yaml" = - (f.clap."2.31.2"."yaml" or false) || - (f.clap."2.31.2".doc or false) || - (clap."2.31.2"."doc" or false); } - { "2.31.2"."yaml-rust" = - (f.clap."2.31.2"."yaml-rust" or false) || - (f.clap."2.31.2".yaml or false) || - (clap."2.31.2"."yaml" or false); } - { "2.31.2".default = (f.clap."2.31.2".default or true); } - ]; - strsim."${deps.clap."2.31.2".strsim}".default = true; - textwrap = fold recursiveUpdate {} [ - { "${deps.clap."2.31.2".textwrap}"."term_size" = - (f.textwrap."${deps.clap."2.31.2".textwrap}"."term_size" or false) || - (clap."2.31.2"."wrap_help" or false) || - (f."clap"."2.31.2"."wrap_help" or false); } - { "${deps.clap."2.31.2".textwrap}".default = true; } - ]; - unicode_width."${deps.clap."2.31.2".unicode_width}".default = true; - vec_map."${deps.clap."2.31.2".vec_map}".default = true; - }) [ - (features_.atty."${deps."clap"."2.31.2"."atty"}" deps) - (features_.bitflags."${deps."clap"."2.31.2"."bitflags"}" deps) - (features_.strsim."${deps."clap"."2.31.2"."strsim"}" deps) - (features_.textwrap."${deps."clap"."2.31.2"."textwrap"}" deps) - (features_.unicode_width."${deps."clap"."2.31.2"."unicode_width"}" deps) - (features_.vec_map."${deps."clap"."2.31.2"."vec_map"}" deps) - (features_.ansi_term."${deps."clap"."2.31.2"."ansi_term"}" deps) - ]; - - -# end -# clicolors-control-0.2.0 - - crates.clicolors_control."0.2.0" = deps: { features?(features_.clicolors_control."0.2.0" deps {}) }: buildRustCrate { - crateName = "clicolors-control"; - version = "0.2.0"; - description = "A common utility library to control CLI colorization"; - authors = [ "Armin Ronacher <armin.ronacher@active-4.com>" ]; - sha256 = "0p1fbs7k70h58ycahmin7b87c0xn6lc94xmh9jw4gxi40mnrvdkp"; - dependencies = mapFeatures features ([ - (crates."lazy_static"."${deps."clicolors_control"."0.2.0"."lazy_static"}" deps) - ]) - ++ (if (kernel == "linux" || kernel == "darwin") then mapFeatures features ([ - (crates."libc"."${deps."clicolors_control"."0.2.0"."libc"}" deps) - ]) else []) - ++ (if kernel == "windows" then mapFeatures features ([ - (crates."kernel32_sys"."${deps."clicolors_control"."0.2.0"."kernel32_sys"}" deps) - (crates."winapi"."${deps."clicolors_control"."0.2.0"."winapi"}" deps) - ]) else []); - features = mkFeatures (features."clicolors_control"."0.2.0" or {}); - }; - features_.clicolors_control."0.2.0" = deps: f: updateFeatures f (rec { - clicolors_control = fold recursiveUpdate {} [ - { "0.2.0"."terminal_autoconfig" = - (f.clicolors_control."0.2.0"."terminal_autoconfig" or false) || - (f.clicolors_control."0.2.0".default or false) || - (clicolors_control."0.2.0"."default" or false); } - { "0.2.0".default = (f.clicolors_control."0.2.0".default or true); } - ]; - kernel32_sys."${deps.clicolors_control."0.2.0".kernel32_sys}".default = true; - lazy_static."${deps.clicolors_control."0.2.0".lazy_static}".default = true; - libc."${deps.clicolors_control."0.2.0".libc}".default = true; - winapi = fold recursiveUpdate {} [ - { "${deps.clicolors_control."0.2.0".winapi}"."consoleapi" = true; } - { "${deps.clicolors_control."0.2.0".winapi}"."handleapi" = true; } - { "${deps.clicolors_control."0.2.0".winapi}"."processenv" = true; } - { "${deps.clicolors_control."0.2.0".winapi}"."winbase" = true; } - { "${deps.clicolors_control."0.2.0".winapi}".default = true; } - ]; - }) [ - (features_.lazy_static."${deps."clicolors_control"."0.2.0"."lazy_static"}" deps) - (features_.libc."${deps."clicolors_control"."0.2.0"."libc"}" deps) - (features_.kernel32_sys."${deps."clicolors_control"."0.2.0"."kernel32_sys"}" deps) - (features_.winapi."${deps."clicolors_control"."0.2.0"."winapi"}" deps) - ]; - - -# end -# console-0.6.1 - - crates.console."0.6.1" = deps: { features?(features_.console."0.6.1" deps {}) }: buildRustCrate { - crateName = "console"; - version = "0.6.1"; - description = "A terminal and console abstraction for Rust"; - authors = [ "Armin Ronacher <armin.ronacher@active-4.com>" ]; - sha256 = "0h46m3nlx7m2pmc1ia2nlbl8d1vp46kqh2c82hx9ckjag68g4zdl"; - dependencies = mapFeatures features ([ - (crates."clicolors_control"."${deps."console"."0.6.1"."clicolors_control"}" deps) - (crates."lazy_static"."${deps."console"."0.6.1"."lazy_static"}" deps) - (crates."libc"."${deps."console"."0.6.1"."libc"}" deps) - (crates."parking_lot"."${deps."console"."0.6.1"."parking_lot"}" deps) - (crates."regex"."${deps."console"."0.6.1"."regex"}" deps) - (crates."unicode_width"."${deps."console"."0.6.1"."unicode_width"}" deps) - ]) - ++ (if (kernel == "linux" || kernel == "darwin") then mapFeatures features ([ - (crates."termios"."${deps."console"."0.6.1"."termios"}" deps) - ]) else []) - ++ (if kernel == "windows" then mapFeatures features ([ - (crates."winapi"."${deps."console"."0.6.1"."winapi"}" deps) - ]) else []); - }; - features_.console."0.6.1" = deps: f: updateFeatures f (rec { - clicolors_control."${deps.console."0.6.1".clicolors_control}".default = true; - console."0.6.1".default = (f.console."0.6.1".default or true); - lazy_static."${deps.console."0.6.1".lazy_static}".default = true; - libc."${deps.console."0.6.1".libc}".default = true; - parking_lot."${deps.console."0.6.1".parking_lot}".default = true; - regex."${deps.console."0.6.1".regex}".default = true; - termios."${deps.console."0.6.1".termios}".default = true; - unicode_width."${deps.console."0.6.1".unicode_width}".default = true; - winapi = fold recursiveUpdate {} [ - { "${deps.console."0.6.1".winapi}"."consoleapi" = true; } - { "${deps.console."0.6.1".winapi}"."processenv" = true; } - { "${deps.console."0.6.1".winapi}"."winbase" = true; } - { "${deps.console."0.6.1".winapi}"."wincon" = true; } - { "${deps.console."0.6.1".winapi}"."winuser" = true; } - { "${deps.console."0.6.1".winapi}".default = true; } - ]; - }) [ - (features_.clicolors_control."${deps."console"."0.6.1"."clicolors_control"}" deps) - (features_.lazy_static."${deps."console"."0.6.1"."lazy_static"}" deps) - (features_.libc."${deps."console"."0.6.1"."libc"}" deps) - (features_.parking_lot."${deps."console"."0.6.1"."parking_lot"}" deps) - (features_.regex."${deps."console"."0.6.1"."regex"}" deps) - (features_.unicode_width."${deps."console"."0.6.1"."unicode_width"}" deps) - (features_.termios."${deps."console"."0.6.1"."termios"}" deps) - (features_.winapi."${deps."console"."0.6.1"."winapi"}" deps) - ]; - - -# end -# failure-0.1.1 - - crates.failure."0.1.1" = deps: { features?(features_.failure."0.1.1" deps {}) }: buildRustCrate { - crateName = "failure"; - version = "0.1.1"; - description = "Experimental error handling abstraction."; - authors = [ "Without Boats <boats@mozilla.com>" ]; - sha256 = "0gf9cmkm9kc163sszgjksqp5pcgj689lnf2104nn4h4is18nhigk"; - dependencies = mapFeatures features ([ - ] - ++ (if features.failure."0.1.1".backtrace or false then [ (crates.backtrace."${deps."failure"."0.1.1".backtrace}" deps) ] else []) - ++ (if features.failure."0.1.1".failure_derive or false then [ (crates.failure_derive."${deps."failure"."0.1.1".failure_derive}" deps) ] else [])); - features = mkFeatures (features."failure"."0.1.1" or {}); - }; - features_.failure."0.1.1" = deps: f: updateFeatures f (rec { - backtrace."${deps.failure."0.1.1".backtrace}".default = true; - failure = fold recursiveUpdate {} [ - { "0.1.1"."backtrace" = - (f.failure."0.1.1"."backtrace" or false) || - (f.failure."0.1.1".std or false) || - (failure."0.1.1"."std" or false); } - { "0.1.1"."derive" = - (f.failure."0.1.1"."derive" or false) || - (f.failure."0.1.1".default or false) || - (failure."0.1.1"."default" or false); } - { "0.1.1"."failure_derive" = - (f.failure."0.1.1"."failure_derive" or false) || - (f.failure."0.1.1".derive or false) || - (failure."0.1.1"."derive" or false); } - { "0.1.1"."std" = - (f.failure."0.1.1"."std" or false) || - (f.failure."0.1.1".default or false) || - (failure."0.1.1"."default" or false); } - { "0.1.1".default = (f.failure."0.1.1".default or true); } - ]; - failure_derive."${deps.failure."0.1.1".failure_derive}".default = true; - }) [ - (features_.backtrace."${deps."failure"."0.1.1"."backtrace"}" deps) - (features_.failure_derive."${deps."failure"."0.1.1"."failure_derive"}" deps) - ]; - - -# end -# failure_derive-0.1.1 - - crates.failure_derive."0.1.1" = deps: { features?(features_.failure_derive."0.1.1" deps {}) }: buildRustCrate { - crateName = "failure_derive"; - version = "0.1.1"; - description = "derives for the failure crate"; - authors = [ "Without Boats <woboats@gmail.com>" ]; - sha256 = "1w895q4pbyx3rwnhgjwfcayk9ghbi166wc1c3553qh8zkbz52k8i"; - procMacro = true; - dependencies = mapFeatures features ([ - (crates."quote"."${deps."failure_derive"."0.1.1"."quote"}" deps) - (crates."syn"."${deps."failure_derive"."0.1.1"."syn"}" deps) - (crates."synstructure"."${deps."failure_derive"."0.1.1"."synstructure"}" deps) - ]); - features = mkFeatures (features."failure_derive"."0.1.1" or {}); - }; - features_.failure_derive."0.1.1" = deps: f: updateFeatures f (rec { - failure_derive = fold recursiveUpdate {} [ - { "0.1.1"."std" = - (f.failure_derive."0.1.1"."std" or false) || - (f.failure_derive."0.1.1".default or false) || - (failure_derive."0.1.1"."default" or false); } - { "0.1.1".default = (f.failure_derive."0.1.1".default or true); } - ]; - quote."${deps.failure_derive."0.1.1".quote}".default = true; - syn."${deps.failure_derive."0.1.1".syn}".default = true; - synstructure."${deps.failure_derive."0.1.1".synstructure}".default = true; - }) [ - (features_.quote."${deps."failure_derive"."0.1.1"."quote"}" deps) - (features_.syn."${deps."failure_derive"."0.1.1"."syn"}" deps) - (features_.synstructure."${deps."failure_derive"."0.1.1"."synstructure"}" deps) - ]; - - -# end -# fuchsia-zircon-0.3.3 - - crates.fuchsia_zircon."0.3.3" = deps: { features?(features_.fuchsia_zircon."0.3.3" deps {}) }: buildRustCrate { - crateName = "fuchsia-zircon"; - version = "0.3.3"; - description = "Rust bindings for the Zircon kernel"; - authors = [ "Raph Levien <raph@google.com>" ]; - sha256 = "0jrf4shb1699r4la8z358vri8318w4mdi6qzfqy30p2ymjlca4gk"; - dependencies = mapFeatures features ([ - (crates."bitflags"."${deps."fuchsia_zircon"."0.3.3"."bitflags"}" deps) - (crates."fuchsia_zircon_sys"."${deps."fuchsia_zircon"."0.3.3"."fuchsia_zircon_sys"}" deps) - ]); - }; - features_.fuchsia_zircon."0.3.3" = deps: f: updateFeatures f (rec { - bitflags."${deps.fuchsia_zircon."0.3.3".bitflags}".default = true; - fuchsia_zircon."0.3.3".default = (f.fuchsia_zircon."0.3.3".default or true); - fuchsia_zircon_sys."${deps.fuchsia_zircon."0.3.3".fuchsia_zircon_sys}".default = true; - }) [ - (features_.bitflags."${deps."fuchsia_zircon"."0.3.3"."bitflags"}" deps) - (features_.fuchsia_zircon_sys."${deps."fuchsia_zircon"."0.3.3"."fuchsia_zircon_sys"}" deps) - ]; - - -# end -# fuchsia-zircon-sys-0.3.3 - - crates.fuchsia_zircon_sys."0.3.3" = deps: { features?(features_.fuchsia_zircon_sys."0.3.3" deps {}) }: buildRustCrate { - crateName = "fuchsia-zircon-sys"; - version = "0.3.3"; - description = "Low-level Rust bindings for the Zircon kernel"; - authors = [ "Raph Levien <raph@google.com>" ]; - sha256 = "08jp1zxrm9jbrr6l26bjal4dbm8bxfy57ickdgibsqxr1n9j3hf5"; - }; - features_.fuchsia_zircon_sys."0.3.3" = deps: f: updateFeatures f (rec { - fuchsia_zircon_sys."0.3.3".default = (f.fuchsia_zircon_sys."0.3.3".default or true); - }) []; - - -# end -# gcc-0.3.54 - - crates.gcc."0.3.54" = deps: { features?(features_.gcc."0.3.54" deps {}) }: buildRustCrate { - crateName = "gcc"; - version = "0.3.54"; - description = "A build-time dependency for Cargo build scripts to assist in invoking the native\nC compiler to compile native C code into a static archive to be linked into Rust\ncode.\n"; - authors = [ "Alex Crichton <alex@alexcrichton.com>" ]; - sha256 = "07a5i47r8achc6gxsba3ga17h9gnh4b9a2cak8vjg4hx62aajkr4"; - dependencies = mapFeatures features ([ -]); - features = mkFeatures (features."gcc"."0.3.54" or {}); - }; - features_.gcc."0.3.54" = deps: f: updateFeatures f (rec { - gcc = fold recursiveUpdate {} [ - { "0.3.54"."rayon" = - (f.gcc."0.3.54"."rayon" or false) || - (f.gcc."0.3.54".parallel or false) || - (gcc."0.3.54"."parallel" or false); } - { "0.3.54".default = (f.gcc."0.3.54".default or true); } - ]; - }) []; - - -# end -# iovec-0.1.2 - - crates.iovec."0.1.2" = deps: { features?(features_.iovec."0.1.2" deps {}) }: buildRustCrate { - crateName = "iovec"; - version = "0.1.2"; - description = "Portable buffer type for scatter/gather I/O operations\n"; - authors = [ "Carl Lerche <me@carllerche.com>" ]; - sha256 = "0vjymmb7wj4v4kza5jjn48fcdb85j3k37y7msjl3ifz0p9yiyp2r"; - dependencies = (if (kernel == "linux" || kernel == "darwin") then mapFeatures features ([ - (crates."libc"."${deps."iovec"."0.1.2"."libc"}" deps) - ]) else []) - ++ (if kernel == "windows" then mapFeatures features ([ - (crates."winapi"."${deps."iovec"."0.1.2"."winapi"}" deps) - ]) else []); - }; - features_.iovec."0.1.2" = deps: f: updateFeatures f (rec { - iovec."0.1.2".default = (f.iovec."0.1.2".default or true); - libc."${deps.iovec."0.1.2".libc}".default = true; - winapi."${deps.iovec."0.1.2".winapi}".default = true; - }) [ - (features_.libc."${deps."iovec"."0.1.2"."libc"}" deps) - (features_.winapi."${deps."iovec"."0.1.2"."winapi"}" deps) - ]; - - -# end -# kernel32-sys-0.2.2 - - crates.kernel32_sys."0.2.2" = deps: { features?(features_.kernel32_sys."0.2.2" deps {}) }: buildRustCrate { - crateName = "kernel32-sys"; - version = "0.2.2"; - description = "Contains function definitions for the Windows API library kernel32. See winapi for types and constants."; - authors = [ "Peter Atashian <retep998@gmail.com>" ]; - sha256 = "1lrw1hbinyvr6cp28g60z97w32w8vsk6pahk64pmrv2fmby8srfj"; - libName = "kernel32"; - build = "build.rs"; - dependencies = mapFeatures features ([ - (crates."winapi"."${deps."kernel32_sys"."0.2.2"."winapi"}" deps) - ]); - - buildDependencies = mapFeatures features ([ - (crates."winapi_build"."${deps."kernel32_sys"."0.2.2"."winapi_build"}" deps) - ]); - }; - features_.kernel32_sys."0.2.2" = deps: f: updateFeatures f (rec { - kernel32_sys."0.2.2".default = (f.kernel32_sys."0.2.2".default or true); - winapi."${deps.kernel32_sys."0.2.2".winapi}".default = true; - winapi_build."${deps.kernel32_sys."0.2.2".winapi_build}".default = true; - }) [ - (features_.winapi."${deps."kernel32_sys"."0.2.2"."winapi"}" deps) - (features_.winapi_build."${deps."kernel32_sys"."0.2.2"."winapi_build"}" deps) - ]; - - -# end -# lazy_static-0.2.11 - - crates.lazy_static."0.2.11" = deps: { features?(features_.lazy_static."0.2.11" deps {}) }: buildRustCrate { - crateName = "lazy_static"; - version = "0.2.11"; - description = "A macro for declaring lazily evaluated statics in Rust."; - authors = [ "Marvin Löbel <loebel.marvin@gmail.com>" ]; - sha256 = "1x6871cvpy5b96yv4c7jvpq316fp5d4609s9py7qk6cd6x9k34vm"; - dependencies = mapFeatures features ([ -]); - features = mkFeatures (features."lazy_static"."0.2.11" or {}); - }; - features_.lazy_static."0.2.11" = deps: f: updateFeatures f (rec { - lazy_static = fold recursiveUpdate {} [ - { "0.2.11"."compiletest_rs" = - (f.lazy_static."0.2.11"."compiletest_rs" or false) || - (f.lazy_static."0.2.11".compiletest or false) || - (lazy_static."0.2.11"."compiletest" or false); } - { "0.2.11"."nightly" = - (f.lazy_static."0.2.11"."nightly" or false) || - (f.lazy_static."0.2.11".spin_no_std or false) || - (lazy_static."0.2.11"."spin_no_std" or false); } - { "0.2.11"."spin" = - (f.lazy_static."0.2.11"."spin" or false) || - (f.lazy_static."0.2.11".spin_no_std or false) || - (lazy_static."0.2.11"."spin_no_std" or false); } - { "0.2.11".default = (f.lazy_static."0.2.11".default or true); } - ]; - }) []; - - -# end -# lazy_static-1.0.0 - - crates.lazy_static."1.0.0" = deps: { features?(features_.lazy_static."1.0.0" deps {}) }: buildRustCrate { - crateName = "lazy_static"; - version = "1.0.0"; - description = "A macro for declaring lazily evaluated statics in Rust."; - authors = [ "Marvin Löbel <loebel.marvin@gmail.com>" ]; - sha256 = "0wfvqyr2nvx2mbsrscg5y7gfa9skhb8p72ayanl8vl49pw24v4fh"; - dependencies = mapFeatures features ([ -]); - features = mkFeatures (features."lazy_static"."1.0.0" or {}); - }; - features_.lazy_static."1.0.0" = deps: f: updateFeatures f (rec { - lazy_static = fold recursiveUpdate {} [ - { "1.0.0"."compiletest_rs" = - (f.lazy_static."1.0.0"."compiletest_rs" or false) || - (f.lazy_static."1.0.0".compiletest or false) || - (lazy_static."1.0.0"."compiletest" or false); } - { "1.0.0"."nightly" = - (f.lazy_static."1.0.0"."nightly" or false) || - (f.lazy_static."1.0.0".spin_no_std or false) || - (lazy_static."1.0.0"."spin_no_std" or false); } - { "1.0.0"."spin" = - (f.lazy_static."1.0.0"."spin" or false) || - (f.lazy_static."1.0.0".spin_no_std or false) || - (lazy_static."1.0.0"."spin_no_std" or false); } - { "1.0.0".default = (f.lazy_static."1.0.0".default or true); } - ]; - }) []; - - -# end -# libc-0.2.40 - - crates.libc."0.2.40" = deps: { features?(features_.libc."0.2.40" deps {}) }: buildRustCrate { - crateName = "libc"; - version = "0.2.40"; - description = "A library for types and bindings to native C functions often found in libc or\nother common platform libraries.\n"; - authors = [ "The Rust Project Developers" ]; - sha256 = "1xfc39237ldzgr8x8wcflgdr8zssi3wif7g2zxc02d94gzkjsw83"; - features = mkFeatures (features."libc"."0.2.40" or {}); - }; - features_.libc."0.2.40" = deps: f: updateFeatures f (rec { - libc = fold recursiveUpdate {} [ - { "0.2.40"."use_std" = - (f.libc."0.2.40"."use_std" or false) || - (f.libc."0.2.40".default or false) || - (libc."0.2.40"."default" or false); } - { "0.2.40".default = (f.libc."0.2.40".default or true); } - ]; - }) []; - - -# end -# memchr-2.0.1 - - crates.memchr."2.0.1" = deps: { features?(features_.memchr."2.0.1" deps {}) }: buildRustCrate { - crateName = "memchr"; - version = "2.0.1"; - description = "Safe interface to memchr."; - authors = [ "Andrew Gallant <jamslam@gmail.com>" "bluss" ]; - sha256 = "0ls2y47rjwapjdax6bp974gdp06ggm1v8d1h69wyydmh1nhgm5gr"; - dependencies = mapFeatures features ([ - ] - ++ (if features.memchr."2.0.1".libc or false then [ (crates.libc."${deps."memchr"."2.0.1".libc}" deps) ] else [])); - features = mkFeatures (features."memchr"."2.0.1" or {}); - }; - features_.memchr."2.0.1" = deps: f: updateFeatures f (rec { - libc = fold recursiveUpdate {} [ - { "${deps.memchr."2.0.1".libc}"."use_std" = - (f.libc."${deps.memchr."2.0.1".libc}"."use_std" or false) || - (memchr."2.0.1"."use_std" or false) || - (f."memchr"."2.0.1"."use_std" or false); } - { "${deps.memchr."2.0.1".libc}".default = (f.libc."${deps.memchr."2.0.1".libc}".default or false); } - ]; - memchr = fold recursiveUpdate {} [ - { "2.0.1"."libc" = - (f.memchr."2.0.1"."libc" or false) || - (f.memchr."2.0.1".default or false) || - (memchr."2.0.1"."default" or false) || - (f.memchr."2.0.1".use_std or false) || - (memchr."2.0.1"."use_std" or false); } - { "2.0.1"."use_std" = - (f.memchr."2.0.1"."use_std" or false) || - (f.memchr."2.0.1".default or false) || - (memchr."2.0.1"."default" or false); } - { "2.0.1".default = (f.memchr."2.0.1".default or true); } - ]; - }) [ - (features_.libc."${deps."memchr"."2.0.1"."libc"}" deps) - ]; - - -# end -# nix-0.10.0 - - crates.nix."0.10.0" = deps: { features?(features_.nix."0.10.0" deps {}) }: buildRustCrate { - crateName = "nix"; - version = "0.10.0"; - description = "Rust friendly bindings to *nix APIs"; - authors = [ "The nix-rust Project Developers" ]; - sha256 = "0ghrbjlc1l21pmldwaz5b5m72xs0m05y1zq5ljlnymn61vbzxsny"; - dependencies = mapFeatures features ([ - (crates."bitflags"."${deps."nix"."0.10.0"."bitflags"}" deps) - (crates."bytes"."${deps."nix"."0.10.0"."bytes"}" deps) - (crates."cfg_if"."${deps."nix"."0.10.0"."cfg_if"}" deps) - (crates."libc"."${deps."nix"."0.10.0"."libc"}" deps) - (crates."void"."${deps."nix"."0.10.0"."void"}" deps) - ]) - ++ (if kernel == "dragonfly" then mapFeatures features ([ -]) else []); - }; - features_.nix."0.10.0" = deps: f: updateFeatures f (rec { - bitflags."${deps.nix."0.10.0".bitflags}".default = true; - bytes."${deps.nix."0.10.0".bytes}".default = (f.bytes."${deps.nix."0.10.0".bytes}".default or false); - cfg_if."${deps.nix."0.10.0".cfg_if}".default = true; - libc."${deps.nix."0.10.0".libc}".default = true; - nix."0.10.0".default = (f.nix."0.10.0".default or true); - void."${deps.nix."0.10.0".void}".default = true; - }) [ - (features_.bitflags."${deps."nix"."0.10.0"."bitflags"}" deps) - (features_.bytes."${deps."nix"."0.10.0"."bytes"}" deps) - (features_.cfg_if."${deps."nix"."0.10.0"."cfg_if"}" deps) - (features_.libc."${deps."nix"."0.10.0"."libc"}" deps) - (features_.void."${deps."nix"."0.10.0"."void"}" deps) - ]; - - -# end -# owning_ref-0.3.3 - - crates.owning_ref."0.3.3" = deps: { features?(features_.owning_ref."0.3.3" deps {}) }: buildRustCrate { - crateName = "owning_ref"; - version = "0.3.3"; - description = "A library for creating references that carry their owner with them."; - authors = [ "Marvin Löbel <loebel.marvin@gmail.com>" ]; - sha256 = "13ivn0ydc0hf957ix0f5si9nnplzzykbr70hni1qz9m19i9kvmrh"; - dependencies = mapFeatures features ([ - (crates."stable_deref_trait"."${deps."owning_ref"."0.3.3"."stable_deref_trait"}" deps) - ]); - }; - features_.owning_ref."0.3.3" = deps: f: updateFeatures f (rec { - owning_ref."0.3.3".default = (f.owning_ref."0.3.3".default or true); - stable_deref_trait."${deps.owning_ref."0.3.3".stable_deref_trait}".default = true; - }) [ - (features_.stable_deref_trait."${deps."owning_ref"."0.3.3"."stable_deref_trait"}" deps) - ]; - - -# end -# parking_lot-0.5.5 - - crates.parking_lot."0.5.5" = deps: { features?(features_.parking_lot."0.5.5" deps {}) }: buildRustCrate { - crateName = "parking_lot"; - version = "0.5.5"; - description = "More compact and efficient implementations of the standard synchronization primitives."; - authors = [ "Amanieu d'Antras <amanieu@gmail.com>" ]; - sha256 = "0balxl593apy0l70z6dzk6c0r9707hgw2c9yav5asjc87dj6fx7l"; - dependencies = mapFeatures features ([ - (crates."parking_lot_core"."${deps."parking_lot"."0.5.5"."parking_lot_core"}" deps) - ] - ++ (if features.parking_lot."0.5.5".owning_ref or false then [ (crates.owning_ref."${deps."parking_lot"."0.5.5".owning_ref}" deps) ] else [])); - features = mkFeatures (features."parking_lot"."0.5.5" or {}); - }; - features_.parking_lot."0.5.5" = deps: f: updateFeatures f (rec { - owning_ref."${deps.parking_lot."0.5.5".owning_ref}".default = true; - parking_lot = fold recursiveUpdate {} [ - { "0.5.5"."owning_ref" = - (f.parking_lot."0.5.5"."owning_ref" or false) || - (f.parking_lot."0.5.5".default or false) || - (parking_lot."0.5.5"."default" or false); } - { "0.5.5".default = (f.parking_lot."0.5.5".default or true); } - ]; - parking_lot_core = fold recursiveUpdate {} [ - { "${deps.parking_lot."0.5.5".parking_lot_core}"."deadlock_detection" = - (f.parking_lot_core."${deps.parking_lot."0.5.5".parking_lot_core}"."deadlock_detection" or false) || - (parking_lot."0.5.5"."deadlock_detection" or false) || - (f."parking_lot"."0.5.5"."deadlock_detection" or false); } - { "${deps.parking_lot."0.5.5".parking_lot_core}"."nightly" = - (f.parking_lot_core."${deps.parking_lot."0.5.5".parking_lot_core}"."nightly" or false) || - (parking_lot."0.5.5"."nightly" or false) || - (f."parking_lot"."0.5.5"."nightly" or false); } - { "${deps.parking_lot."0.5.5".parking_lot_core}".default = true; } - ]; - }) [ - (features_.owning_ref."${deps."parking_lot"."0.5.5"."owning_ref"}" deps) - (features_.parking_lot_core."${deps."parking_lot"."0.5.5"."parking_lot_core"}" deps) - ]; - - -# end -# parking_lot_core-0.2.14 - - crates.parking_lot_core."0.2.14" = deps: { features?(features_.parking_lot_core."0.2.14" deps {}) }: buildRustCrate { - crateName = "parking_lot_core"; - version = "0.2.14"; - description = "An advanced API for creating custom synchronization primitives."; - authors = [ "Amanieu d'Antras <amanieu@gmail.com>" ]; - sha256 = "0giypb8ckkpi34p14nfk4b19c7przj4jxs95gs7x2v5ncmi0y286"; - dependencies = mapFeatures features ([ - (crates."rand"."${deps."parking_lot_core"."0.2.14"."rand"}" deps) - (crates."smallvec"."${deps."parking_lot_core"."0.2.14"."smallvec"}" deps) - ]) - ++ (if (kernel == "linux" || kernel == "darwin") then mapFeatures features ([ - (crates."libc"."${deps."parking_lot_core"."0.2.14"."libc"}" deps) - ]) else []) - ++ (if kernel == "windows" then mapFeatures features ([ - (crates."winapi"."${deps."parking_lot_core"."0.2.14"."winapi"}" deps) - ]) else []); - features = mkFeatures (features."parking_lot_core"."0.2.14" or {}); - }; - features_.parking_lot_core."0.2.14" = deps: f: updateFeatures f (rec { - libc."${deps.parking_lot_core."0.2.14".libc}".default = true; - parking_lot_core = fold recursiveUpdate {} [ - { "0.2.14"."backtrace" = - (f.parking_lot_core."0.2.14"."backtrace" or false) || - (f.parking_lot_core."0.2.14".deadlock_detection or false) || - (parking_lot_core."0.2.14"."deadlock_detection" or false); } - { "0.2.14"."petgraph" = - (f.parking_lot_core."0.2.14"."petgraph" or false) || - (f.parking_lot_core."0.2.14".deadlock_detection or false) || - (parking_lot_core."0.2.14"."deadlock_detection" or false); } - { "0.2.14"."thread-id" = - (f.parking_lot_core."0.2.14"."thread-id" or false) || - (f.parking_lot_core."0.2.14".deadlock_detection or false) || - (parking_lot_core."0.2.14"."deadlock_detection" or false); } - { "0.2.14".default = (f.parking_lot_core."0.2.14".default or true); } - ]; - rand."${deps.parking_lot_core."0.2.14".rand}".default = true; - smallvec."${deps.parking_lot_core."0.2.14".smallvec}".default = true; - winapi = fold recursiveUpdate {} [ - { "${deps.parking_lot_core."0.2.14".winapi}"."errhandlingapi" = true; } - { "${deps.parking_lot_core."0.2.14".winapi}"."handleapi" = true; } - { "${deps.parking_lot_core."0.2.14".winapi}"."minwindef" = true; } - { "${deps.parking_lot_core."0.2.14".winapi}"."ntstatus" = true; } - { "${deps.parking_lot_core."0.2.14".winapi}"."winbase" = true; } - { "${deps.parking_lot_core."0.2.14".winapi}"."winerror" = true; } - { "${deps.parking_lot_core."0.2.14".winapi}"."winnt" = true; } - { "${deps.parking_lot_core."0.2.14".winapi}".default = true; } - ]; - }) [ - (features_.rand."${deps."parking_lot_core"."0.2.14"."rand"}" deps) - (features_.smallvec."${deps."parking_lot_core"."0.2.14"."smallvec"}" deps) - (features_.libc."${deps."parking_lot_core"."0.2.14"."libc"}" deps) - (features_.winapi."${deps."parking_lot_core"."0.2.14"."winapi"}" deps) - ]; - - -# end -# quote-0.3.15 - - crates.quote."0.3.15" = deps: { features?(features_.quote."0.3.15" deps {}) }: buildRustCrate { - crateName = "quote"; - version = "0.3.15"; - description = "Quasi-quoting macro quote!(...)"; - authors = [ "David Tolnay <dtolnay@gmail.com>" ]; - sha256 = "09il61jv4kd1360spaj46qwyl21fv1qz18fsv2jra8wdnlgl5jsg"; - }; - features_.quote."0.3.15" = deps: f: updateFeatures f (rec { - quote."0.3.15".default = (f.quote."0.3.15".default or true); - }) []; - - -# end -# rand-0.4.2 - - crates.rand."0.4.2" = deps: { features?(features_.rand."0.4.2" deps {}) }: buildRustCrate { - crateName = "rand"; - version = "0.4.2"; - description = "Random number generators and other randomness functionality.\n"; - authors = [ "The Rust Project Developers" ]; - sha256 = "0h8pkg23wb67i8904sm76iyr1jlmhklb85vbpz9c9191a24xzkfm"; - dependencies = (if kernel == "fuchsia" then mapFeatures features ([ - (crates."fuchsia_zircon"."${deps."rand"."0.4.2"."fuchsia_zircon"}" deps) - ]) else []) - ++ (if (kernel == "linux" || kernel == "darwin") then mapFeatures features ([ - ] - ++ (if features.rand."0.4.2".libc or false then [ (crates.libc."${deps."rand"."0.4.2".libc}" deps) ] else [])) else []) - ++ (if kernel == "windows" then mapFeatures features ([ - (crates."winapi"."${deps."rand"."0.4.2"."winapi"}" deps) - ]) else []); - features = mkFeatures (features."rand"."0.4.2" or {}); - }; - features_.rand."0.4.2" = deps: f: updateFeatures f (rec { - fuchsia_zircon."${deps.rand."0.4.2".fuchsia_zircon}".default = true; - libc."${deps.rand."0.4.2".libc}".default = true; - rand = fold recursiveUpdate {} [ - { "0.4.2"."i128_support" = - (f.rand."0.4.2"."i128_support" or false) || - (f.rand."0.4.2".nightly or false) || - (rand."0.4.2"."nightly" or false); } - { "0.4.2"."libc" = - (f.rand."0.4.2"."libc" or false) || - (f.rand."0.4.2".std or false) || - (rand."0.4.2"."std" or false); } - { "0.4.2"."std" = - (f.rand."0.4.2"."std" or false) || - (f.rand."0.4.2".default or false) || - (rand."0.4.2"."default" or false); } - { "0.4.2".default = (f.rand."0.4.2".default or true); } - ]; - winapi = fold recursiveUpdate {} [ - { "${deps.rand."0.4.2".winapi}"."minwindef" = true; } - { "${deps.rand."0.4.2".winapi}"."ntsecapi" = true; } - { "${deps.rand."0.4.2".winapi}"."profileapi" = true; } - { "${deps.rand."0.4.2".winapi}"."winnt" = true; } - { "${deps.rand."0.4.2".winapi}".default = true; } - ]; - }) [ - (features_.fuchsia_zircon."${deps."rand"."0.4.2"."fuchsia_zircon"}" deps) - (features_.libc."${deps."rand"."0.4.2"."libc"}" deps) - (features_.winapi."${deps."rand"."0.4.2"."winapi"}" deps) - ]; - - -# end -# redox_syscall-0.1.37 - - crates.redox_syscall."0.1.37" = deps: { features?(features_.redox_syscall."0.1.37" deps {}) }: buildRustCrate { - crateName = "redox_syscall"; - version = "0.1.37"; - description = "A Rust library to access raw Redox system calls"; - authors = [ "Jeremy Soller <jackpot51@gmail.com>" ]; - sha256 = "0qa0jl9cr3qp80an8vshp2mcn8rzvwiavs1398hq1vsjw7pc3h2v"; - libName = "syscall"; - }; - features_.redox_syscall."0.1.37" = deps: f: updateFeatures f (rec { - redox_syscall."0.1.37".default = (f.redox_syscall."0.1.37".default or true); - }) []; - - -# end -# redox_termios-0.1.1 - - crates.redox_termios."0.1.1" = deps: { features?(features_.redox_termios."0.1.1" deps {}) }: buildRustCrate { - crateName = "redox_termios"; - version = "0.1.1"; - description = "A Rust library to access Redox termios functions"; - authors = [ "Jeremy Soller <jackpot51@gmail.com>" ]; - sha256 = "04s6yyzjca552hdaqlvqhp3vw0zqbc304md5czyd3axh56iry8wh"; - libPath = "src/lib.rs"; - dependencies = mapFeatures features ([ - (crates."redox_syscall"."${deps."redox_termios"."0.1.1"."redox_syscall"}" deps) - ]); - }; - features_.redox_termios."0.1.1" = deps: f: updateFeatures f (rec { - redox_syscall."${deps.redox_termios."0.1.1".redox_syscall}".default = true; - redox_termios."0.1.1".default = (f.redox_termios."0.1.1".default or true); - }) [ - (features_.redox_syscall."${deps."redox_termios"."0.1.1"."redox_syscall"}" deps) - ]; - - -# end -# regex-0.2.11 - - crates.regex."0.2.11" = deps: { features?(features_.regex."0.2.11" deps {}) }: buildRustCrate { - crateName = "regex"; - version = "0.2.11"; - description = "An implementation of regular expressions for Rust. This implementation uses\nfinite automata and guarantees linear time matching on all inputs.\n"; - authors = [ "The Rust Project Developers" ]; - sha256 = "0r50cymxdqp0fv1dxd22mjr6y32q450nwacd279p9s7lh0cafijj"; - dependencies = mapFeatures features ([ - (crates."aho_corasick"."${deps."regex"."0.2.11"."aho_corasick"}" deps) - (crates."memchr"."${deps."regex"."0.2.11"."memchr"}" deps) - (crates."regex_syntax"."${deps."regex"."0.2.11"."regex_syntax"}" deps) - (crates."thread_local"."${deps."regex"."0.2.11"."thread_local"}" deps) - (crates."utf8_ranges"."${deps."regex"."0.2.11"."utf8_ranges"}" deps) - ]); - features = mkFeatures (features."regex"."0.2.11" or {}); - }; - features_.regex."0.2.11" = deps: f: updateFeatures f (rec { - aho_corasick."${deps.regex."0.2.11".aho_corasick}".default = true; - memchr."${deps.regex."0.2.11".memchr}".default = true; - regex = fold recursiveUpdate {} [ - { "0.2.11"."pattern" = - (f.regex."0.2.11"."pattern" or false) || - (f.regex."0.2.11".unstable or false) || - (regex."0.2.11"."unstable" or false); } - { "0.2.11".default = (f.regex."0.2.11".default or true); } - ]; - regex_syntax."${deps.regex."0.2.11".regex_syntax}".default = true; - thread_local."${deps.regex."0.2.11".thread_local}".default = true; - utf8_ranges."${deps.regex."0.2.11".utf8_ranges}".default = true; - }) [ - (features_.aho_corasick."${deps."regex"."0.2.11"."aho_corasick"}" deps) - (features_.memchr."${deps."regex"."0.2.11"."memchr"}" deps) - (features_.regex_syntax."${deps."regex"."0.2.11"."regex_syntax"}" deps) - (features_.thread_local."${deps."regex"."0.2.11"."thread_local"}" deps) - (features_.utf8_ranges."${deps."regex"."0.2.11"."utf8_ranges"}" deps) - ]; - - -# end -# regex-1.0.0 - - crates.regex."1.0.0" = deps: { features?(features_.regex."1.0.0" deps {}) }: buildRustCrate { - crateName = "regex"; - version = "1.0.0"; - description = "An implementation of regular expressions for Rust. This implementation uses\nfinite automata and guarantees linear time matching on all inputs.\n"; - authors = [ "The Rust Project Developers" ]; - sha256 = "1wynl7jmf6l2fnsayw1bzfh7km4wwqnqfpi8anj7wbhdk17i6j6b"; - dependencies = mapFeatures features ([ - (crates."aho_corasick"."${deps."regex"."1.0.0"."aho_corasick"}" deps) - (crates."memchr"."${deps."regex"."1.0.0"."memchr"}" deps) - (crates."regex_syntax"."${deps."regex"."1.0.0"."regex_syntax"}" deps) - (crates."thread_local"."${deps."regex"."1.0.0"."thread_local"}" deps) - (crates."utf8_ranges"."${deps."regex"."1.0.0"."utf8_ranges"}" deps) - ]); - features = mkFeatures (features."regex"."1.0.0" or {}); - }; - features_.regex."1.0.0" = deps: f: updateFeatures f (rec { - aho_corasick."${deps.regex."1.0.0".aho_corasick}".default = true; - memchr."${deps.regex."1.0.0".memchr}".default = true; - regex = fold recursiveUpdate {} [ - { "1.0.0"."pattern" = - (f.regex."1.0.0"."pattern" or false) || - (f.regex."1.0.0".unstable or false) || - (regex."1.0.0"."unstable" or false); } - { "1.0.0"."use_std" = - (f.regex."1.0.0"."use_std" or false) || - (f.regex."1.0.0".default or false) || - (regex."1.0.0"."default" or false); } - { "1.0.0".default = (f.regex."1.0.0".default or true); } - ]; - regex_syntax."${deps.regex."1.0.0".regex_syntax}".default = true; - thread_local."${deps.regex."1.0.0".thread_local}".default = true; - utf8_ranges."${deps.regex."1.0.0".utf8_ranges}".default = true; - }) [ - (features_.aho_corasick."${deps."regex"."1.0.0"."aho_corasick"}" deps) - (features_.memchr."${deps."regex"."1.0.0"."memchr"}" deps) - (features_.regex_syntax."${deps."regex"."1.0.0"."regex_syntax"}" deps) - (features_.thread_local."${deps."regex"."1.0.0"."thread_local"}" deps) - (features_.utf8_ranges."${deps."regex"."1.0.0"."utf8_ranges"}" deps) - ]; - - -# end -# regex-syntax-0.5.6 - - crates.regex_syntax."0.5.6" = deps: { features?(features_.regex_syntax."0.5.6" deps {}) }: buildRustCrate { - crateName = "regex-syntax"; - version = "0.5.6"; - description = "A regular expression parser."; - authors = [ "The Rust Project Developers" ]; - sha256 = "10vf3r34bgjnbrnqd5aszn35bjvm8insw498l1vjy8zx5yms3427"; - dependencies = mapFeatures features ([ - (crates."ucd_util"."${deps."regex_syntax"."0.5.6"."ucd_util"}" deps) - ]); - }; - features_.regex_syntax."0.5.6" = deps: f: updateFeatures f (rec { - regex_syntax."0.5.6".default = (f.regex_syntax."0.5.6".default or true); - ucd_util."${deps.regex_syntax."0.5.6".ucd_util}".default = true; - }) [ - (features_.ucd_util."${deps."regex_syntax"."0.5.6"."ucd_util"}" deps) - ]; - - -# end -# regex-syntax-0.6.0 - - crates.regex_syntax."0.6.0" = deps: { features?(features_.regex_syntax."0.6.0" deps {}) }: buildRustCrate { - crateName = "regex-syntax"; - version = "0.6.0"; - description = "A regular expression parser."; - authors = [ "The Rust Project Developers" ]; - sha256 = "1zlaq3y1zbiqilxbh0471bizcs4p14b58nqr815w3ssyam169cy6"; - dependencies = mapFeatures features ([ - (crates."ucd_util"."${deps."regex_syntax"."0.6.0"."ucd_util"}" deps) - ]); - }; - features_.regex_syntax."0.6.0" = deps: f: updateFeatures f (rec { - regex_syntax."0.6.0".default = (f.regex_syntax."0.6.0".default or true); - ucd_util."${deps.regex_syntax."0.6.0".ucd_util}".default = true; - }) [ - (features_.ucd_util."${deps."regex_syntax"."0.6.0"."ucd_util"}" deps) - ]; - - -# end -# rustc-demangle-0.1.8 - - crates.rustc_demangle."0.1.8" = deps: { features?(features_.rustc_demangle."0.1.8" deps {}) }: buildRustCrate { - crateName = "rustc-demangle"; - version = "0.1.8"; - description = "Rust compiler symbol demangling.\n"; - authors = [ "Alex Crichton <alex@alexcrichton.com>" ]; - sha256 = "0xn5l86qfwngmdsjbglj30wh37zplvch96jl9raysl3k06gkkv3c"; - }; - features_.rustc_demangle."0.1.8" = deps: f: updateFeatures f (rec { - rustc_demangle."0.1.8".default = (f.rustc_demangle."0.1.8".default or true); - }) []; - - -# end -# smallvec-0.6.1 - - crates.smallvec."0.6.1" = deps: { features?(features_.smallvec."0.6.1" deps {}) }: buildRustCrate { - crateName = "smallvec"; - version = "0.6.1"; - description = "'Small vector' optimization: store up to a small number of items on the stack"; - authors = [ "Simon Sapin <simon.sapin@exyr.org>" ]; - sha256 = "16m07xh67xcdpwjkbzbv9d7visxmz4fb4a8jfcrsrf333w7vkl1g"; - libPath = "lib.rs"; - dependencies = mapFeatures features ([ -]); - features = mkFeatures (features."smallvec"."0.6.1" or {}); - }; - features_.smallvec."0.6.1" = deps: f: updateFeatures f (rec { - smallvec = fold recursiveUpdate {} [ - { "0.6.1"."std" = - (f.smallvec."0.6.1"."std" or false) || - (f.smallvec."0.6.1".default or false) || - (smallvec."0.6.1"."default" or false); } - { "0.6.1".default = (f.smallvec."0.6.1".default or true); } - ]; - }) []; - - -# end -# socket2-0.3.5 - - crates.socket2."0.3.5" = deps: { features?(features_.socket2."0.3.5" deps {}) }: buildRustCrate { - crateName = "socket2"; - version = "0.3.5"; - description = "Utilities for handling networking sockets with a maximal amount of configuration\npossible intended.\n"; - authors = [ "Alex Crichton <alex@alexcrichton.com>" ]; - sha256 = "0bi6z6qvra16rwm3lk7xz4aakvcmmak6fpdmra1v7ccp40bss0kf"; - dependencies = (if (kernel == "linux" || kernel == "darwin") then mapFeatures features ([ - (crates."cfg_if"."${deps."socket2"."0.3.5"."cfg_if"}" deps) - (crates."libc"."${deps."socket2"."0.3.5"."libc"}" deps) - ]) else []) - ++ (if kernel == "windows" then mapFeatures features ([ - (crates."winapi"."${deps."socket2"."0.3.5"."winapi"}" deps) - ]) else []); - features = mkFeatures (features."socket2"."0.3.5" or {}); - }; - features_.socket2."0.3.5" = deps: f: updateFeatures f (rec { - cfg_if."${deps.socket2."0.3.5".cfg_if}".default = true; - libc."${deps.socket2."0.3.5".libc}".default = true; - socket2."0.3.5".default = (f.socket2."0.3.5".default or true); - winapi = fold recursiveUpdate {} [ - { "${deps.socket2."0.3.5".winapi}"."handleapi" = true; } - { "${deps.socket2."0.3.5".winapi}"."minwindef" = true; } - { "${deps.socket2."0.3.5".winapi}"."ws2def" = true; } - { "${deps.socket2."0.3.5".winapi}"."ws2ipdef" = true; } - { "${deps.socket2."0.3.5".winapi}"."ws2tcpip" = true; } - { "${deps.socket2."0.3.5".winapi}".default = true; } - ]; - }) [ - (features_.cfg_if."${deps."socket2"."0.3.5"."cfg_if"}" deps) - (features_.libc."${deps."socket2"."0.3.5"."libc"}" deps) - (features_.winapi."${deps."socket2"."0.3.5"."winapi"}" deps) - ]; - - -# end -# stable_deref_trait-1.0.0 - - crates.stable_deref_trait."1.0.0" = deps: { features?(features_.stable_deref_trait."1.0.0" deps {}) }: buildRustCrate { - crateName = "stable_deref_trait"; - version = "1.0.0"; - description = "An unsafe marker trait for types like Box and Rc that dereference to a stable address even when moved, and hence can be used with libraries such as owning_ref and rental.\n"; - authors = [ "Robert Grosse <n210241048576@gmail.com>" ]; - sha256 = "0ya5fms9qdwkd52d3a111w4vcz18j4rbfx4p88z44116cqd6cczr"; - features = mkFeatures (features."stable_deref_trait"."1.0.0" or {}); - }; - features_.stable_deref_trait."1.0.0" = deps: f: updateFeatures f (rec { - stable_deref_trait = fold recursiveUpdate {} [ - { "1.0.0"."std" = - (f.stable_deref_trait."1.0.0"."std" or false) || - (f.stable_deref_trait."1.0.0".default or false) || - (stable_deref_trait."1.0.0"."default" or false); } - { "1.0.0".default = (f.stable_deref_trait."1.0.0".default or true); } - ]; - }) []; - - -# end -# strsim-0.7.0 - - crates.strsim."0.7.0" = deps: { features?(features_.strsim."0.7.0" deps {}) }: buildRustCrate { - crateName = "strsim"; - version = "0.7.0"; - description = "Implementations of string similarity metrics.\nIncludes Hamming, Levenshtein, OSA, Damerau-Levenshtein, Jaro, and Jaro-Winkler.\n"; - authors = [ "Danny Guo <dannyguo91@gmail.com>" ]; - sha256 = "0fy0k5f2705z73mb3x9459bpcvrx4ky8jpr4zikcbiwan4bnm0iv"; - }; - features_.strsim."0.7.0" = deps: f: updateFeatures f (rec { - strsim."0.7.0".default = (f.strsim."0.7.0".default or true); - }) []; - - -# end -# syn-0.11.11 - - crates.syn."0.11.11" = deps: { features?(features_.syn."0.11.11" deps {}) }: buildRustCrate { - crateName = "syn"; - version = "0.11.11"; - description = "Nom parser for Rust source code"; - authors = [ "David Tolnay <dtolnay@gmail.com>" ]; - sha256 = "0yw8ng7x1dn5a6ykg0ib49y7r9nhzgpiq2989rqdp7rdz3n85502"; - dependencies = mapFeatures features ([ - ] - ++ (if features.syn."0.11.11".quote or false then [ (crates.quote."${deps."syn"."0.11.11".quote}" deps) ] else []) - ++ (if features.syn."0.11.11".synom or false then [ (crates.synom."${deps."syn"."0.11.11".synom}" deps) ] else []) - ++ (if features.syn."0.11.11".unicode-xid or false then [ (crates.unicode_xid."${deps."syn"."0.11.11".unicode_xid}" deps) ] else [])); - features = mkFeatures (features."syn"."0.11.11" or {}); - }; - features_.syn."0.11.11" = deps: f: updateFeatures f (rec { - quote."${deps.syn."0.11.11".quote}".default = true; - syn = fold recursiveUpdate {} [ - { "0.11.11"."parsing" = - (f.syn."0.11.11"."parsing" or false) || - (f.syn."0.11.11".default or false) || - (syn."0.11.11"."default" or false); } - { "0.11.11"."printing" = - (f.syn."0.11.11"."printing" or false) || - (f.syn."0.11.11".default or false) || - (syn."0.11.11"."default" or false); } - { "0.11.11"."quote" = - (f.syn."0.11.11"."quote" or false) || - (f.syn."0.11.11".printing or false) || - (syn."0.11.11"."printing" or false); } - { "0.11.11"."synom" = - (f.syn."0.11.11"."synom" or false) || - (f.syn."0.11.11".parsing or false) || - (syn."0.11.11"."parsing" or false); } - { "0.11.11"."unicode-xid" = - (f.syn."0.11.11"."unicode-xid" or false) || - (f.syn."0.11.11".parsing or false) || - (syn."0.11.11"."parsing" or false); } - { "0.11.11".default = (f.syn."0.11.11".default or true); } - ]; - synom."${deps.syn."0.11.11".synom}".default = true; - unicode_xid."${deps.syn."0.11.11".unicode_xid}".default = true; - }) [ - (features_.quote."${deps."syn"."0.11.11"."quote"}" deps) - (features_.synom."${deps."syn"."0.11.11"."synom"}" deps) - (features_.unicode_xid."${deps."syn"."0.11.11"."unicode_xid"}" deps) - ]; - - -# end -# synom-0.11.3 - - crates.synom."0.11.3" = deps: { features?(features_.synom."0.11.3" deps {}) }: buildRustCrate { - crateName = "synom"; - version = "0.11.3"; - description = "Stripped-down Nom parser used by Syn"; - authors = [ "David Tolnay <dtolnay@gmail.com>" ]; - sha256 = "1l6d1s9qjfp6ng2s2z8219igvlv7gyk8gby97sdykqc1r93d8rhc"; - dependencies = mapFeatures features ([ - (crates."unicode_xid"."${deps."synom"."0.11.3"."unicode_xid"}" deps) - ]); - }; - features_.synom."0.11.3" = deps: f: updateFeatures f (rec { - synom."0.11.3".default = (f.synom."0.11.3".default or true); - unicode_xid."${deps.synom."0.11.3".unicode_xid}".default = true; - }) [ - (features_.unicode_xid."${deps."synom"."0.11.3"."unicode_xid"}" deps) - ]; - - -# end -# synstructure-0.6.1 - - crates.synstructure."0.6.1" = deps: { features?(features_.synstructure."0.6.1" deps {}) }: buildRustCrate { - crateName = "synstructure"; - version = "0.6.1"; - description = "expand_substructure-like helpers for syn macros 1.1 derive macros"; - authors = [ "Michael Layzell <michael@thelayzells.com>" ]; - sha256 = "1xnyw58va9zcqi4vvpnmpllacdj2a0mvy0cbd698izmr4qs92xlk"; - dependencies = mapFeatures features ([ - (crates."quote"."${deps."synstructure"."0.6.1"."quote"}" deps) - (crates."syn"."${deps."synstructure"."0.6.1"."syn"}" deps) - ]); - features = mkFeatures (features."synstructure"."0.6.1" or {}); - }; - features_.synstructure."0.6.1" = deps: f: updateFeatures f (rec { - quote."${deps.synstructure."0.6.1".quote}".default = true; - syn = fold recursiveUpdate {} [ - { "${deps.synstructure."0.6.1".syn}"."visit" = true; } - { "${deps.synstructure."0.6.1".syn}".default = true; } - ]; - synstructure."0.6.1".default = (f.synstructure."0.6.1".default or true); - }) [ - (features_.quote."${deps."synstructure"."0.6.1"."quote"}" deps) - (features_.syn."${deps."synstructure"."0.6.1"."syn"}" deps) - ]; - - -# end -# systemfd-0.3.0 - - crates.systemfd."0.3.0" = deps: { features?(features_.systemfd."0.3.0" deps {}) }: buildRustCrate { - crateName = "systemfd"; - version = "0.3.0"; - description = "A convenient helper for passing sockets into another process. Best to be combined with listenfd and cargo-watch."; - authors = [ "Armin Ronacher <armin.ronacher@active-4.com>" ]; - sha256 = "0dpckgb0afyzhbv8lccgzmw5yczpfcdsdlqsfncn1vcxvcf0yb5i"; - dependencies = mapFeatures features ([ - (crates."clap"."${deps."systemfd"."0.3.0"."clap"}" deps) - (crates."console"."${deps."systemfd"."0.3.0"."console"}" deps) - (crates."failure"."${deps."systemfd"."0.3.0"."failure"}" deps) - (crates."failure_derive"."${deps."systemfd"."0.3.0"."failure_derive"}" deps) - (crates."lazy_static"."${deps."systemfd"."0.3.0"."lazy_static"}" deps) - (crates."libc"."${deps."systemfd"."0.3.0"."libc"}" deps) - (crates."regex"."${deps."systemfd"."0.3.0"."regex"}" deps) - ]) - ++ (if (kernel == "linux" || kernel == "darwin") then mapFeatures features ([ - (crates."nix"."${deps."systemfd"."0.3.0"."nix"}" deps) - ]) else []) - ++ (if kernel == "windows" then mapFeatures features ([ - (crates."socket2"."${deps."systemfd"."0.3.0"."socket2"}" deps) - (crates."uuid"."${deps."systemfd"."0.3.0"."uuid"}" deps) - (crates."winapi"."${deps."systemfd"."0.3.0"."winapi"}" deps) - ]) else []); - }; - features_.systemfd."0.3.0" = deps: f: updateFeatures f (rec { - clap."${deps.systemfd."0.3.0".clap}".default = true; - console."${deps.systemfd."0.3.0".console}".default = true; - failure."${deps.systemfd."0.3.0".failure}".default = true; - failure_derive."${deps.systemfd."0.3.0".failure_derive}".default = true; - lazy_static."${deps.systemfd."0.3.0".lazy_static}".default = true; - libc."${deps.systemfd."0.3.0".libc}".default = true; - nix."${deps.systemfd."0.3.0".nix}".default = true; - regex."${deps.systemfd."0.3.0".regex}".default = true; - socket2."${deps.systemfd."0.3.0".socket2}".default = true; - systemfd."0.3.0".default = (f.systemfd."0.3.0".default or true); - uuid = fold recursiveUpdate {} [ - { "${deps.systemfd."0.3.0".uuid}"."v4" = true; } - { "${deps.systemfd."0.3.0".uuid}".default = true; } - ]; - winapi = fold recursiveUpdate {} [ - { "${deps.systemfd."0.3.0".winapi}"."winsock2" = true; } - { "${deps.systemfd."0.3.0".winapi}".default = true; } - ]; - }) [ - (features_.clap."${deps."systemfd"."0.3.0"."clap"}" deps) - (features_.console."${deps."systemfd"."0.3.0"."console"}" deps) - (features_.failure."${deps."systemfd"."0.3.0"."failure"}" deps) - (features_.failure_derive."${deps."systemfd"."0.3.0"."failure_derive"}" deps) - (features_.lazy_static."${deps."systemfd"."0.3.0"."lazy_static"}" deps) - (features_.libc."${deps."systemfd"."0.3.0"."libc"}" deps) - (features_.regex."${deps."systemfd"."0.3.0"."regex"}" deps) - (features_.nix."${deps."systemfd"."0.3.0"."nix"}" deps) - (features_.socket2."${deps."systemfd"."0.3.0"."socket2"}" deps) - (features_.uuid."${deps."systemfd"."0.3.0"."uuid"}" deps) - (features_.winapi."${deps."systemfd"."0.3.0"."winapi"}" deps) - ]; - - -# end -# termion-1.5.1 - - crates.termion."1.5.1" = deps: { features?(features_.termion."1.5.1" deps {}) }: buildRustCrate { - crateName = "termion"; - version = "1.5.1"; - description = "A bindless library for manipulating terminals."; - authors = [ "ticki <Ticki@users.noreply.github.com>" "gycos <alexandre.bury@gmail.com>" "IGI-111 <igi-111@protonmail.com>" ]; - sha256 = "02gq4vd8iws1f3gjrgrgpajsk2bk43nds5acbbb4s8dvrdvr8nf1"; - dependencies = (if !(kernel == "redox") then mapFeatures features ([ - (crates."libc"."${deps."termion"."1.5.1"."libc"}" deps) - ]) else []) - ++ (if kernel == "redox" then mapFeatures features ([ - (crates."redox_syscall"."${deps."termion"."1.5.1"."redox_syscall"}" deps) - (crates."redox_termios"."${deps."termion"."1.5.1"."redox_termios"}" deps) - ]) else []); - }; - features_.termion."1.5.1" = deps: f: updateFeatures f (rec { - libc."${deps.termion."1.5.1".libc}".default = true; - redox_syscall."${deps.termion."1.5.1".redox_syscall}".default = true; - redox_termios."${deps.termion."1.5.1".redox_termios}".default = true; - termion."1.5.1".default = (f.termion."1.5.1".default or true); - }) [ - (features_.libc."${deps."termion"."1.5.1"."libc"}" deps) - (features_.redox_syscall."${deps."termion"."1.5.1"."redox_syscall"}" deps) - (features_.redox_termios."${deps."termion"."1.5.1"."redox_termios"}" deps) - ]; - - -# end -# termios-0.2.2 - - crates.termios."0.2.2" = deps: { features?(features_.termios."0.2.2" deps {}) }: buildRustCrate { - crateName = "termios"; - version = "0.2.2"; - description = "Safe bindings for the termios library."; - authors = [ "David Cuddeback <david.cuddeback@gmail.com>" ]; - sha256 = "0hjy4idvcapx9i6qbhf5536aqnf6rqk2aaj424sfwy7qhv6xmcx3"; - dependencies = mapFeatures features ([ - (crates."libc"."${deps."termios"."0.2.2"."libc"}" deps) - ]); - }; - features_.termios."0.2.2" = deps: f: updateFeatures f (rec { - libc."${deps.termios."0.2.2".libc}".default = true; - termios."0.2.2".default = (f.termios."0.2.2".default or true); - }) [ - (features_.libc."${deps."termios"."0.2.2"."libc"}" deps) - ]; - - -# end -# textwrap-0.9.0 - - crates.textwrap."0.9.0" = deps: { features?(features_.textwrap."0.9.0" deps {}) }: buildRustCrate { - crateName = "textwrap"; - version = "0.9.0"; - description = "Textwrap is a small library for word wrapping, indenting, and\ndedenting strings.\n\nYou can use it to format strings (such as help and error messages) for\ndisplay in commandline applications. It is designed to be efficient\nand handle Unicode characters correctly.\n"; - authors = [ "Martin Geisler <martin@geisler.net>" ]; - sha256 = "18jg79ndjlwndz01mlbh82kkr2arqm658yn5kwp65l5n1hz8w4yb"; - dependencies = mapFeatures features ([ - (crates."unicode_width"."${deps."textwrap"."0.9.0"."unicode_width"}" deps) - ]); - }; - features_.textwrap."0.9.0" = deps: f: updateFeatures f (rec { - textwrap."0.9.0".default = (f.textwrap."0.9.0".default or true); - unicode_width."${deps.textwrap."0.9.0".unicode_width}".default = true; - }) [ - (features_.unicode_width."${deps."textwrap"."0.9.0"."unicode_width"}" deps) - ]; - - -# end -# thread_local-0.3.5 - - crates.thread_local."0.3.5" = deps: { features?(features_.thread_local."0.3.5" deps {}) }: buildRustCrate { - crateName = "thread_local"; - version = "0.3.5"; - description = "Per-object thread-local storage"; - authors = [ "Amanieu d'Antras <amanieu@gmail.com>" ]; - sha256 = "0mkp0sp91aqsk7brgygai4igv751r1754rsxn37mig3ag5rx8np6"; - dependencies = mapFeatures features ([ - (crates."lazy_static"."${deps."thread_local"."0.3.5"."lazy_static"}" deps) - (crates."unreachable"."${deps."thread_local"."0.3.5"."unreachable"}" deps) - ]); - }; - features_.thread_local."0.3.5" = deps: f: updateFeatures f (rec { - lazy_static."${deps.thread_local."0.3.5".lazy_static}".default = true; - thread_local."0.3.5".default = (f.thread_local."0.3.5".default or true); - unreachable."${deps.thread_local."0.3.5".unreachable}".default = true; - }) [ - (features_.lazy_static."${deps."thread_local"."0.3.5"."lazy_static"}" deps) - (features_.unreachable."${deps."thread_local"."0.3.5"."unreachable"}" deps) - ]; - - -# end -# ucd-util-0.1.1 - - crates.ucd_util."0.1.1" = deps: { features?(features_.ucd_util."0.1.1" deps {}) }: buildRustCrate { - crateName = "ucd-util"; - version = "0.1.1"; - description = "A small utility library for working with the Unicode character database.\n"; - authors = [ "Andrew Gallant <jamslam@gmail.com>" ]; - sha256 = "02a8h3siipx52b832xc8m8rwasj6nx9jpiwfldw8hp6k205hgkn0"; - }; - features_.ucd_util."0.1.1" = deps: f: updateFeatures f (rec { - ucd_util."0.1.1".default = (f.ucd_util."0.1.1".default or true); - }) []; - - -# end -# unicode-width-0.1.4 - - crates.unicode_width."0.1.4" = deps: { features?(features_.unicode_width."0.1.4" deps {}) }: buildRustCrate { - crateName = "unicode-width"; - version = "0.1.4"; - description = "Determine displayed width of `char` and `str` types\naccording to Unicode Standard Annex #11 rules.\n"; - authors = [ "kwantam <kwantam@gmail.com>" ]; - sha256 = "1rp7a04icn9y5c0lm74nrd4py0rdl0af8bhdwq7g478n1xifpifl"; - features = mkFeatures (features."unicode_width"."0.1.4" or {}); - }; - features_.unicode_width."0.1.4" = deps: f: updateFeatures f (rec { - unicode_width."0.1.4".default = (f.unicode_width."0.1.4".default or true); - }) []; - - -# end -# unicode-xid-0.0.4 - - crates.unicode_xid."0.0.4" = deps: { features?(features_.unicode_xid."0.0.4" deps {}) }: buildRustCrate { - crateName = "unicode-xid"; - version = "0.0.4"; - description = "Determine whether characters have the XID_Start\nor XID_Continue properties according to\nUnicode Standard Annex #31.\n"; - authors = [ "erick.tryzelaar <erick.tryzelaar@gmail.com>" "kwantam <kwantam@gmail.com>" ]; - sha256 = "1dc8wkkcd3s6534s5aw4lbjn8m67flkkbnajp5bl8408wdg8rh9v"; - features = mkFeatures (features."unicode_xid"."0.0.4" or {}); - }; - features_.unicode_xid."0.0.4" = deps: f: updateFeatures f (rec { - unicode_xid."0.0.4".default = (f.unicode_xid."0.0.4".default or true); - }) []; - - -# end -# unreachable-1.0.0 - - crates.unreachable."1.0.0" = deps: { features?(features_.unreachable."1.0.0" deps {}) }: buildRustCrate { - crateName = "unreachable"; - version = "1.0.0"; - description = "An unreachable code optimization hint in stable rust."; - authors = [ "Jonathan Reem <jonathan.reem@gmail.com>" ]; - sha256 = "1am8czbk5wwr25gbp2zr007744fxjshhdqjz9liz7wl4pnv3whcf"; - dependencies = mapFeatures features ([ - (crates."void"."${deps."unreachable"."1.0.0"."void"}" deps) - ]); - }; - features_.unreachable."1.0.0" = deps: f: updateFeatures f (rec { - unreachable."1.0.0".default = (f.unreachable."1.0.0".default or true); - void."${deps.unreachable."1.0.0".void}".default = (f.void."${deps.unreachable."1.0.0".void}".default or false); - }) [ - (features_.void."${deps."unreachable"."1.0.0"."void"}" deps) - ]; - - -# end -# utf8-ranges-1.0.0 - - crates.utf8_ranges."1.0.0" = deps: { features?(features_.utf8_ranges."1.0.0" deps {}) }: buildRustCrate { - crateName = "utf8-ranges"; - version = "1.0.0"; - description = "Convert ranges of Unicode codepoints to UTF-8 byte ranges."; - authors = [ "Andrew Gallant <jamslam@gmail.com>" ]; - sha256 = "0rzmqprwjv9yp1n0qqgahgm24872x6c0xddfym5pfndy7a36vkn0"; - }; - features_.utf8_ranges."1.0.0" = deps: f: updateFeatures f (rec { - utf8_ranges."1.0.0".default = (f.utf8_ranges."1.0.0".default or true); - }) []; - - -# end -# uuid-0.6.3 - - crates.uuid."0.6.3" = deps: { features?(features_.uuid."0.6.3" deps {}) }: buildRustCrate { - crateName = "uuid"; - version = "0.6.3"; - description = "A library to generate and parse UUIDs.\n"; - authors = [ "Ashley Mannix<ashleymannix@live.com.au>" "Christopher Armstrong" "Dylan DPC<dylan.dpc@gmail.com>" "Hunar Roop Kahlon<hunar.roop@gmail.com>" ]; - sha256 = "1kjp5xglhab4saaikn95zn3mr4zja7484pv307cb5bxm2sawb8p6"; - dependencies = mapFeatures features ([ - (crates."cfg_if"."${deps."uuid"."0.6.3"."cfg_if"}" deps) - ] - ++ (if features.uuid."0.6.3".rand or false then [ (crates.rand."${deps."uuid"."0.6.3".rand}" deps) ] else [])); - features = mkFeatures (features."uuid"."0.6.3" or {}); - }; - features_.uuid."0.6.3" = deps: f: updateFeatures f (rec { - cfg_if."${deps.uuid."0.6.3".cfg_if}".default = true; - rand."${deps.uuid."0.6.3".rand}".default = true; - uuid = fold recursiveUpdate {} [ - { "0.6.3"."md5" = - (f.uuid."0.6.3"."md5" or false) || - (f.uuid."0.6.3".v3 or false) || - (uuid."0.6.3"."v3" or false); } - { "0.6.3"."rand" = - (f.uuid."0.6.3"."rand" or false) || - (f.uuid."0.6.3".v3 or false) || - (uuid."0.6.3"."v3" or false) || - (f.uuid."0.6.3".v4 or false) || - (uuid."0.6.3"."v4" or false) || - (f.uuid."0.6.3".v5 or false) || - (uuid."0.6.3"."v5" or false); } - { "0.6.3"."serde" = - (f.uuid."0.6.3"."serde" or false) || - (f.uuid."0.6.3".playground or false) || - (uuid."0.6.3"."playground" or false); } - { "0.6.3"."sha1" = - (f.uuid."0.6.3"."sha1" or false) || - (f.uuid."0.6.3".v5 or false) || - (uuid."0.6.3"."v5" or false); } - { "0.6.3"."std" = - (f.uuid."0.6.3"."std" or false) || - (f.uuid."0.6.3".default or false) || - (uuid."0.6.3"."default" or false) || - (f.uuid."0.6.3".use_std or false) || - (uuid."0.6.3"."use_std" or false); } - { "0.6.3"."v1" = - (f.uuid."0.6.3"."v1" or false) || - (f.uuid."0.6.3".playground or false) || - (uuid."0.6.3"."playground" or false); } - { "0.6.3"."v3" = - (f.uuid."0.6.3"."v3" or false) || - (f.uuid."0.6.3".playground or false) || - (uuid."0.6.3"."playground" or false); } - { "0.6.3"."v4" = - (f.uuid."0.6.3"."v4" or false) || - (f.uuid."0.6.3".playground or false) || - (uuid."0.6.3"."playground" or false); } - { "0.6.3"."v5" = - (f.uuid."0.6.3"."v5" or false) || - (f.uuid."0.6.3".playground or false) || - (uuid."0.6.3"."playground" or false); } - { "0.6.3".default = (f.uuid."0.6.3".default or true); } - ]; - }) [ - (features_.cfg_if."${deps."uuid"."0.6.3"."cfg_if"}" deps) - (features_.rand."${deps."uuid"."0.6.3"."rand"}" deps) - ]; - - -# end -# vec_map-0.8.1 - - crates.vec_map."0.8.1" = deps: { features?(features_.vec_map."0.8.1" deps {}) }: buildRustCrate { - crateName = "vec_map"; - version = "0.8.1"; - description = "A simple map based on a vector for small integer keys"; - authors = [ "Alex Crichton <alex@alexcrichton.com>" "Jorge Aparicio <japaricious@gmail.com>" "Alexis Beingessner <a.beingessner@gmail.com>" "Brian Anderson <>" "tbu- <>" "Manish Goregaokar <>" "Aaron Turon <aturon@mozilla.com>" "Adolfo Ochagavía <>" "Niko Matsakis <>" "Steven Fackler <>" "Chase Southwood <csouth3@illinois.edu>" "Eduard Burtescu <>" "Florian Wilkens <>" "Félix Raimundo <>" "Tibor Benke <>" "Markus Siemens <markus@m-siemens.de>" "Josh Branchaud <jbranchaud@gmail.com>" "Huon Wilson <dbau.pp@gmail.com>" "Corey Farwell <coref@rwell.org>" "Aaron Liblong <>" "Nick Cameron <nrc@ncameron.org>" "Patrick Walton <pcwalton@mimiga.net>" "Felix S Klock II <>" "Andrew Paseltiner <apaseltiner@gmail.com>" "Sean McArthur <sean.monstar@gmail.com>" "Vadim Petrochenkov <>" ]; - sha256 = "1jj2nrg8h3l53d43rwkpkikq5a5x15ms4rf1rw92hp5lrqhi8mpi"; - dependencies = mapFeatures features ([ -]); - features = mkFeatures (features."vec_map"."0.8.1" or {}); - }; - features_.vec_map."0.8.1" = deps: f: updateFeatures f (rec { - vec_map = fold recursiveUpdate {} [ - { "0.8.1"."serde" = - (f.vec_map."0.8.1"."serde" or false) || - (f.vec_map."0.8.1".eders or false) || - (vec_map."0.8.1"."eders" or false); } - { "0.8.1".default = (f.vec_map."0.8.1".default or true); } - ]; - }) []; - - -# end -# void-1.0.2 - - crates.void."1.0.2" = deps: { features?(features_.void."1.0.2" deps {}) }: buildRustCrate { - crateName = "void"; - version = "1.0.2"; - description = "The uninhabited void type for use in statically impossible cases."; - authors = [ "Jonathan Reem <jonathan.reem@gmail.com>" ]; - sha256 = "0h1dm0dx8dhf56a83k68mijyxigqhizpskwxfdrs1drwv2cdclv3"; - features = mkFeatures (features."void"."1.0.2" or {}); - }; - features_.void."1.0.2" = deps: f: updateFeatures f (rec { - void = fold recursiveUpdate {} [ - { "1.0.2"."std" = - (f.void."1.0.2"."std" or false) || - (f.void."1.0.2".default or false) || - (void."1.0.2"."default" or false); } - { "1.0.2".default = (f.void."1.0.2".default or true); } - ]; - }) []; - - -# end -# winapi-0.2.8 - - crates.winapi."0.2.8" = deps: { features?(features_.winapi."0.2.8" deps {}) }: buildRustCrate { - crateName = "winapi"; - version = "0.2.8"; - description = "Types and constants for WinAPI bindings. See README for list of crates providing function bindings."; - authors = [ "Peter Atashian <retep998@gmail.com>" ]; - sha256 = "0a45b58ywf12vb7gvj6h3j264nydynmzyqz8d8rqxsj6icqv82as"; - }; - features_.winapi."0.2.8" = deps: f: updateFeatures f (rec { - winapi."0.2.8".default = (f.winapi."0.2.8".default or true); - }) []; - - -# end -# winapi-0.3.4 - - crates.winapi."0.3.4" = deps: { features?(features_.winapi."0.3.4" deps {}) }: buildRustCrate { - crateName = "winapi"; - version = "0.3.4"; - description = "Raw FFI bindings for all of Windows API."; - authors = [ "Peter Atashian <retep998@gmail.com>" ]; - sha256 = "1qbrf5dcnd8j36cawby5d9r5vx07r0l4ryf672pfncnp8895k9lx"; - build = "build.rs"; - dependencies = (if kernel == "i686-pc-windows-gnu" then mapFeatures features ([ - (crates."winapi_i686_pc_windows_gnu"."${deps."winapi"."0.3.4"."winapi_i686_pc_windows_gnu"}" deps) - ]) else []) - ++ (if kernel == "x86_64-pc-windows-gnu" then mapFeatures features ([ - (crates."winapi_x86_64_pc_windows_gnu"."${deps."winapi"."0.3.4"."winapi_x86_64_pc_windows_gnu"}" deps) - ]) else []); - features = mkFeatures (features."winapi"."0.3.4" or {}); - }; - features_.winapi."0.3.4" = deps: f: updateFeatures f (rec { - winapi."0.3.4".default = (f.winapi."0.3.4".default or true); - winapi_i686_pc_windows_gnu."${deps.winapi."0.3.4".winapi_i686_pc_windows_gnu}".default = true; - winapi_x86_64_pc_windows_gnu."${deps.winapi."0.3.4".winapi_x86_64_pc_windows_gnu}".default = true; - }) [ - (features_.winapi_i686_pc_windows_gnu."${deps."winapi"."0.3.4"."winapi_i686_pc_windows_gnu"}" deps) - (features_.winapi_x86_64_pc_windows_gnu."${deps."winapi"."0.3.4"."winapi_x86_64_pc_windows_gnu"}" deps) - ]; - - -# end -# winapi-build-0.1.1 - - crates.winapi_build."0.1.1" = deps: { features?(features_.winapi_build."0.1.1" deps {}) }: buildRustCrate { - crateName = "winapi-build"; - version = "0.1.1"; - description = "Common code for build.rs in WinAPI -sys crates."; - authors = [ "Peter Atashian <retep998@gmail.com>" ]; - sha256 = "1lxlpi87rkhxcwp2ykf1ldw3p108hwm24nywf3jfrvmff4rjhqga"; - libName = "build"; - }; - features_.winapi_build."0.1.1" = deps: f: updateFeatures f (rec { - winapi_build."0.1.1".default = (f.winapi_build."0.1.1".default or true); - }) []; - - -# end -# winapi-i686-pc-windows-gnu-0.4.0 - - crates.winapi_i686_pc_windows_gnu."0.4.0" = deps: { features?(features_.winapi_i686_pc_windows_gnu."0.4.0" deps {}) }: buildRustCrate { - crateName = "winapi-i686-pc-windows-gnu"; - version = "0.4.0"; - description = "Import libraries for the i686-pc-windows-gnu target. Please don't use this crate directly, depend on winapi instead."; - authors = [ "Peter Atashian <retep998@gmail.com>" ]; - sha256 = "05ihkij18r4gamjpxj4gra24514can762imjzlmak5wlzidplzrp"; - build = "build.rs"; - }; - features_.winapi_i686_pc_windows_gnu."0.4.0" = deps: f: updateFeatures f (rec { - winapi_i686_pc_windows_gnu."0.4.0".default = (f.winapi_i686_pc_windows_gnu."0.4.0".default or true); - }) []; - - -# end -# winapi-x86_64-pc-windows-gnu-0.4.0 - - crates.winapi_x86_64_pc_windows_gnu."0.4.0" = deps: { features?(features_.winapi_x86_64_pc_windows_gnu."0.4.0" deps {}) }: buildRustCrate { - crateName = "winapi-x86_64-pc-windows-gnu"; - version = "0.4.0"; - description = "Import libraries for the x86_64-pc-windows-gnu target. Please don't use this crate directly, depend on winapi instead."; - authors = [ "Peter Atashian <retep998@gmail.com>" ]; - sha256 = "0n1ylmlsb8yg1v583i4xy0qmqg42275flvbc51hdqjjfjcl9vlbj"; - build = "build.rs"; - }; - features_.winapi_x86_64_pc_windows_gnu."0.4.0" = deps: f: updateFeatures f (rec { - winapi_x86_64_pc_windows_gnu."0.4.0".default = (f.winapi_x86_64_pc_windows_gnu."0.4.0".default or true); - }) []; - - -# end -} diff --git a/pkgs/development/tools/systemfd/default.nix b/pkgs/development/tools/systemfd/default.nix index a1c93f46dcb..a695cf83a29 100644 --- a/pkgs/development/tools/systemfd/default.nix +++ b/pkgs/development/tools/systemfd/default.nix @@ -1,18 +1,32 @@ -{ lib, fetchgit, darwin, buildPlatform -, buildRustCrate, buildRustCrateHelpers, defaultCrateOverrides }: +{ lib +, fetchFromGitHub +, rustPlatform +}: -((import ./Cargo.nix { - inherit lib buildPlatform buildRustCrate buildRustCrateHelpers fetchgit; - cratesIO = import ./crates-io.nix { inherit lib buildRustCrate buildRustCrateHelpers; }; -}).systemfd {}).override { - crateOverrides = defaultCrateOverrides // { - systemfd = attrs: { - meta = { - description = "A convenient helper for passing sockets into another process"; - homepage = "https://github.com/mitsuhiko/systemfd"; - license = lib.licenses.asl20; - maintainers = [ lib.maintainers.adisbladis ]; - }; - }; +let + version = "0.4.0"; + +in +rustPlatform.buildRustPackage { + + pname = "systemfd"; + inherit version; + + src = fetchFromGitHub { + repo = "systemfd"; + owner = "mitsuhiko"; + rev = version; + sha256 = "sha256-HUJgYPD4C9fMUYKpzmIy9gDT6HAZDWw1JLMKLgzRQTY="; }; + + cargoSha256 = "sha256-UhfE9Q5E79rN2mjkNB5IAN/J0fbpoy9CmM6ojHQcFP0="; + + meta = { + description = "A convenient helper for passing sockets into another process"; + homepage = "https://github.com/mitsuhiko/systemfd"; + license = lib.licenses.asl20; + maintainers = [ lib.maintainers.adisbladis ]; + platforms = lib.platforms.unix; + }; + } diff --git a/pkgs/development/tools/toxiproxy/default.nix b/pkgs/development/tools/toxiproxy/default.nix index 5ecd6ad2eb6..c3b77e4b3e2 100644 --- a/pkgs/development/tools/toxiproxy/default.nix +++ b/pkgs/development/tools/toxiproxy/default.nix @@ -1,26 +1,32 @@ -{ lib, buildGoPackage, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub }: -buildGoPackage rec { +buildGoModule rec { pname = "toxiproxy"; - version = "2.1.4"; + version = "2.4.0"; + src = fetchFromGitHub { owner = "Shopify"; repo = "toxiproxy"; rev = "v${version}"; - sha256 = "07yhsvscdv1qjfc2fyyh9qsrrdwrrw04wadk5gaq4qddcway7vig"; + sha256 = "sha256-vFf1yLpAa+yO1PCE+pLTnvvtROtpVxlEgACDNNUWBEM="; }; - goPackagePath = "github.com/Shopify/toxiproxy"; - subPackages = ["cmd" "cli"]; - ldflags = [ "-X github.com/Shopify/toxiproxy.Version=v${version}" ]; + vendorSha256 = "sha256-mrRMyIU6zeyAT/fXbBmtMlZzpyeB45FQmYJ4FDwTRTo="; + + excludedPackages = [ "test/e2e" ]; + + ldflags = [ "-s" "-w" "-X github.com/Shopify/toxiproxy/v2.Version=${version}" ]; + + checkFlags = [ "-short" ]; postInstall = '' mv $out/bin/cli $out/bin/toxiproxy-cli - mv $out/bin/cmd $out/bin/toxiproxy-cmd + mv $out/bin/server $out/bin/toxiproxy-server ''; meta = { description = "Proxy for for simulating network conditions"; + homepage = "https://github.com/Shopify/toxiproxy"; maintainers = with lib.maintainers; [ avnik ]; license = lib.licenses.mit; }; diff --git a/pkgs/development/tools/treefmt/default.nix b/pkgs/development/tools/treefmt/default.nix index f9cef54564f..2ffbd4a1bed 100644 --- a/pkgs/development/tools/treefmt/default.nix +++ b/pkgs/development/tools/treefmt/default.nix @@ -1,16 +1,16 @@ { lib, rustPlatform, fetchFromGitHub }: rustPlatform.buildRustPackage rec { pname = "treefmt"; - version = "0.3.0"; + version = "0.4.1"; src = fetchFromGitHub { owner = "numtide"; repo = "treefmt"; rev = "v${version}"; - sha256 = "sha256-PTT87Na4KpyN6a7T49vHHhSqSOF6JSWr5/jiys1Uzko="; + hash = "sha256-+EcqrmjZR8pkBiIXpdJ/KfmTm719lgz7oC9tH7OhJKY="; }; - cargoSha256 = "sha256-Gvr6Zjd9Gvn2CyjNHlJaKPFYUViPezRwoDBeVelRlkU="; + cargoSha256 = "sha256-DXsKUeSmNUIKPsvrLxkg+Kp78rEfjmJQYf2pj1LWW38="; meta = { description = "one CLI to format the code tree"; diff --git a/pkgs/development/tools/unityhub/default.nix b/pkgs/development/tools/unityhub/default.nix index e52c3882216..4a6ca92e964 100644 --- a/pkgs/development/tools/unityhub/default.nix +++ b/pkgs/development/tools/unityhub/default.nix @@ -1,4 +1,4 @@ -{ lib, fetchurl, appimageTools, gsettings-desktop-schemas, gtk3 }: +{ lib, fetchurl, appimageTools }: appimageTools.wrapType2 rec { pname = "unityhub"; @@ -31,10 +31,6 @@ appimageTools.wrapType2 rec { $out/share/icons/hicolor/64x64/apps/unityhub.png ''; - profile = '' - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS - ''; - meta = with lib; { homepage = "https://unity3d.com/"; description = "Game development tool"; diff --git a/pkgs/development/web/bloomrpc/default.nix b/pkgs/development/web/bloomrpc/default.nix index 1c9ed7c2e10..59ab32131c2 100644 --- a/pkgs/development/web/bloomrpc/default.nix +++ b/pkgs/development/web/bloomrpc/default.nix @@ -1,4 +1,4 @@ -{ lib, fetchurl, gsettings-desktop-schemas, gtk3, appimageTools }: +{ lib, fetchurl, appimageTools }: let pname = "bloomrpc"; @@ -19,7 +19,6 @@ appimageTools.wrapType2 { profile = '' export LC_ALL=C.UTF-8 - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS ''; multiPkgs = null; # no 32bit needed diff --git a/pkgs/development/web/deno/default.nix b/pkgs/development/web/deno/default.nix index 4291af81f40..eff2af506c9 100644 --- a/pkgs/development/web/deno/default.nix +++ b/pkgs/development/web/deno/default.nix @@ -16,15 +16,15 @@ rustPlatform.buildRustPackage rec { pname = "deno"; - version = "1.21.3"; + version = "1.22.0"; src = fetchFromGitHub { owner = "denoland"; repo = pname; rev = "v${version}"; - sha256 = "sha256-0LjY5XBtR9uoxLOOFRebbSuH9chSdH1/9rtsY15NdCM="; + sha256 = "sha256-gragdn3ToOz/We+iVOrX/Fx0g7Zbb7RT5C/2K1+/spc="; }; - cargoSha256 = "sha256-8YldzUO9Jysu0w2NvGWDIr2eIWcrX9ALUodYwIykt64="; + cargoSha256 = "sha256-+lNrkOCiC9WT0hbuUBCTaFCsVWJVbp/up2iov3MMt8o="; postPatch = '' # upstream uses lld on aarch64-darwin for faster builds diff --git a/pkgs/development/web/deno/librusty_v8.nix b/pkgs/development/web/deno/librusty_v8.nix index e1a9b0de753..f736120c416 100644 --- a/pkgs/development/web/deno/librusty_v8.nix +++ b/pkgs/development/web/deno/librusty_v8.nix @@ -11,11 +11,11 @@ let }; in fetch_librusty_v8 { - version = "0.42.0"; + version = "0.42.1"; shas = { - x86_64-linux = "sha256-p8wC2r9+PKEabaHj0NF059TBSKOpE+rtZkqk1SXINzQ="; - aarch64-linux = "sha256-1mQQ5XmR+WcYW6BGfnUdsG4yzhwIal80Y5fWw4XAJ3g="; - x86_64-darwin = "sha256-a5Mu33gXn2X02WRdtO1hb9JRctmFTiCaLNhScz2D0J8="; - aarch64-darwin = "sha256-THEFn8nQDktXJlY1zpi2760KAS2eKEQ9O3Y+yqI2OYw="; + x86_64-linux = "sha256-rAqIkJ85l5eSojTowVZl5waK/fk00JI4fI1AY1ue/i4="; + aarch64-linux = "sha256-uGptQ5V4u6Vz5BI9xmMShB3gnIUjvA/LKeh+kj71XK8="; + x86_64-darwin = "sha256-Hcb4Vct9aTv4APJfNpydRY68jpEE3wZVctKhURohz4Y="; + aarch64-darwin = "sha256-OSrbI7pX9arCJt8ymRLEARo8admPDHvpDLqf3+iYzVQ="; }; } diff --git a/pkgs/development/web/flyctl/default.nix b/pkgs/development/web/flyctl/default.nix index 714cab494f7..9f48c92cb70 100644 --- a/pkgs/development/web/flyctl/default.nix +++ b/pkgs/development/web/flyctl/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "flyctl"; - version = "0.0.323"; + version = "0.0.328"; src = fetchFromGitHub { owner = "superfly"; repo = "flyctl"; rev = "v${version}"; - sha256 = "sha256-7mPZ4p7fb49Lc+sx7/jEw+oFdFaYtEJcSzFS5haC6NM="; + sha256 = "sha256-hcRdFkYZ3IqrxdGMdLWwHvJgGNkXfxsCQMHgPfy8cOk="; }; - vendorSha256 = "sha256-dTeFeDdT44k1HxIEuvTU/A8xAa1VhVv4ZFbvg1PagPw="; + vendorSha256 = "sha256-5mYa41bUOnBQgbaPv7/9BjpaN+/MXIPrieJQL2M58gw="; subPackages = [ "." ]; diff --git a/pkgs/development/web/nodejs/v14.nix b/pkgs/development/web/nodejs/v14.nix index d2f63498947..7cae7dd557a 100644 --- a/pkgs/development/web/nodejs/v14.nix +++ b/pkgs/development/web/nodejs/v14.nix @@ -7,7 +7,7 @@ let in buildNodejs { inherit enableNpm; - version = "14.19.2"; - sha256 = "sha256-70N1qRUv9p8oI9eyCjtTdnoEYWS7rHgkQpyyFtFojPA="; + version = "14.19.3"; + sha256 = "sha256-XPRbHxrKd1I6zzYkDB1TqZknkHCncR6r8jNG+IsMyZQ="; patches = lib.optional stdenv.isDarwin ./bypass-xcodebuild.diff; } diff --git a/pkgs/development/web/nodejs/v17.nix b/pkgs/development/web/nodejs/v17.nix deleted file mode 100644 index 3fbaf223f30..00000000000 --- a/pkgs/development/web/nodejs/v17.nix +++ /dev/null @@ -1,15 +0,0 @@ -{ callPackage, python3, enableNpm ? true }: - -let - buildNodejs = callPackage ./nodejs.nix { - python = python3; - }; -in -buildNodejs { - inherit enableNpm; - version = "17.9.0"; - sha256 = "1q1rr9kvlk9rd35x3x206iy894hq2ywyhqxbb6grak6wcvdgcnan"; - patches = [ - ./disable-darwin-v8-system-instrumentation.patch - ]; -} diff --git a/pkgs/development/web/nodejs/v18.nix b/pkgs/development/web/nodejs/v18.nix index 6a55c20b195..b0a9924cd82 100644 --- a/pkgs/development/web/nodejs/v18.nix +++ b/pkgs/development/web/nodejs/v18.nix @@ -7,8 +7,8 @@ let in buildNodejs { inherit enableNpm; - version = "18.1.0"; - sha256 = "0zhb61ihzslmpl1g3dd6vcxjccc8gwj1v4hfphk7f3cy10hcrc78"; + version = "18.2.0"; + sha256 = "sha256-IwWxXr9VR0dOkFtQAvm6mcfu7wHXOU3+bzhGzGvK1m0="; patches = [ ./disable-darwin-v8-system-instrumentation.patch ]; diff --git a/pkgs/games/anki/bin.nix b/pkgs/games/anki/bin.nix index aade2aaae9e..45ec432dc7b 100644 --- a/pkgs/games/anki/bin.nix +++ b/pkgs/games/anki/bin.nix @@ -3,22 +3,22 @@ let pname = "anki-bin"; # Update hashes for both Linux and Darwin! - version = "2.1.51"; + version = "2.1.52"; sources = { linux = fetchurl { url = "https://github.com/ankitects/anki/releases/download/${version}/anki-${version}-linux-qt6.tar.zst"; - sha256 = "sha256-ZKVc+TvkNu5mGgibhRIuoLuIfvyoVDy+c4h+Apz9P+0="; + sha256 = "sha256-+eRflNMxutoSY9yQfnhIjfLg9b9CNv+7UuYyg4jgfK4="; }; # For some reason anki distributes completely separate dmg-files for the aarch64 version and the x86_64 version darwin-x86_64 = fetchurl { url = "https://github.com/ankitects/anki/releases/download/${version}/anki-${version}-mac-intel-qt6.dmg"; - sha256 = "sha256-wZMJEbcpezVAuBSKlwNTHlqjp0FfmyDB7XD6BBuJhyA="; + sha256 = "sha256-keQxaf0KOQjCb22dQD/1VytW2fk35OPUJyJ42kaoAr8="; }; darwin-aarch64 = fetchurl { url = "https://github.com/ankitects/anki/releases/download/${version}/anki-${version}-mac-apple-qt6.dmg"; - sha256 = "sha256-6RDTYKoisX5DJ9VPWrP9VH9DCABabb9MB3nG4S8jtR0="; + sha256 = "sha256-mYPSOjXh18nWpZjXLAjEodoxopr6rxadESMAf/t9SlI="; }; }; @@ -44,7 +44,7 @@ let meta = with lib; { inherit (anki.meta) license homepage description longDescription; - platforms = [ "x86_64-linux" "x86_64-darwin" ]; + platforms = [ "x86_64-linux" "x86_64-darwin" "aarch64-darwin" ]; maintainers = with maintainers; [ atemu ]; }; diff --git a/pkgs/games/blightmud/default.nix b/pkgs/games/blightmud/default.nix index 2e177f169fa..43feb8b7c2a 100644 --- a/pkgs/games/blightmud/default.nix +++ b/pkgs/games/blightmud/default.nix @@ -75,5 +75,7 @@ rustPlatform.buildRustPackage rec { license = licenses.gpl3Plus; maintainers = with maintainers; [ cpu ]; platforms = platforms.linux; + # See https://github.com/NixOS/nixpkgs/pull/160120 + broken = withTTS; }; } diff --git a/pkgs/games/brogue/default.nix b/pkgs/games/brogue/default.nix index d4f1f8faeeb..891c9a40ec1 100644 --- a/pkgs/games/brogue/default.nix +++ b/pkgs/games/brogue/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, SDL, ncurses, libtcod, makeDesktopItem }: +{ lib, stdenv, fetchurl, fetchpatch, SDL, ncurses, libtcod, makeDesktopItem }: stdenv.mkDerivation rec { pname = "brogue"; @@ -8,6 +8,15 @@ stdenv.mkDerivation rec { url = "https://sites.google.com/site/broguegame/brogue-${version}-linux-amd64.tbz2"; sha256 = "0i042zb3axjf0cpgpdh8hvfn66dbfizidyvw0iymjk2n760z2kx7"; }; + patches = [ + # Pull upstream fix for -fno-common toolchains: + # https://github.com/tmewett/BrogueCE/pull/63 + (fetchpatch { + name = "fno-common.patch"; + url = "https://github.com/tmewett/BrogueCE/commit/2c7ed0c48d9efd06bf0a2589ba967c0a22a8fa87.patch"; + sha256 = "19lr2fa25dh79klm4f4kqyyqq7w5xmw9z0fvylkcckqvcv7dwhp3"; + }) + ]; prePatch = '' sed -i Makefile -e 's,LIBTCODDIR=.*,LIBTCODDIR=${libtcod},g' \ diff --git a/pkgs/games/cdogs-sdl/default.nix b/pkgs/games/cdogs-sdl/default.nix index 2b072a44752..474fd735f73 100644 --- a/pkgs/games/cdogs-sdl/default.nix +++ b/pkgs/games/cdogs-sdl/default.nix @@ -26,7 +26,10 @@ stdenv.mkDerivation rec { patchShebangs src/proto/nanopb/generator/* ''; - cmakeFlags = [ "-DCDOGS_DATA_DIR=${placeholder "out"}/" ]; + cmakeFlags = [ + "-DCDOGS_DATA_DIR=${placeholder "out"}/" + "-DCMAKE_C_FLAGS=-Wno-error=array-bounds" + ]; nativeBuildInputs = [ pkg-config diff --git a/pkgs/games/chocolate-doom/default.nix b/pkgs/games/chocolate-doom/default.nix index 28ef9b6417e..fabb12fa71f 100644 --- a/pkgs/games/chocolate-doom/default.nix +++ b/pkgs/games/chocolate-doom/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, autoreconfHook, pkg-config, SDL2, SDL2_mixer, SDL2_net, fetchFromGitHub }: +{ lib, stdenv, autoreconfHook, pkg-config, SDL2, SDL2_mixer, SDL2_net, fetchFromGitHub, fetchpatch }: stdenv.mkDerivation rec { pname = "chocolate-doom"; @@ -11,6 +11,16 @@ stdenv.mkDerivation rec { sha256 = "1zlcqhd49c5n8vaahgaqrc2y10z86xng51sbd82xm3rk2dly25jp"; }; + patches = [ + # Pull upstream patch to fix builx against gcc-10: + # https://github.com/chocolate-doom/chocolate-doom/pull/1257 + (fetchpatch { + name = "fno-common.patch"; + url = "https://github.com/chocolate-doom/chocolate-doom/commit/a8fd4b1f563d24d4296c3e8225c8404e2724d4c2.patch"; + sha256 = "1dmbygn952sy5n8qqp0asg11pmygwgygl17lrj7i0fxa0nrhixhj"; + }) + ]; + postPatch = '' sed -e 's#/games#/bin#g' -i src{,/setup}/Makefile.am ''; diff --git a/pkgs/games/cl-wordle/default.nix b/pkgs/games/cl-wordle/default.nix index 1ad3487c3fe..505c5166e42 100644 --- a/pkgs/games/cl-wordle/default.nix +++ b/pkgs/games/cl-wordle/default.nix @@ -1,15 +1,17 @@ -{ lib, rustPlatform, fetchCrate }: +{ lib, rustPlatform, fetchFromGitHub }: rustPlatform.buildRustPackage rec { pname = "cl-wordle"; - version = "0.4.0"; + version = "0.5.0"; - src = fetchCrate { - inherit pname version; - sha256 = "sha256-z2XpXgOviBRcberwpxQ4ml1T04k5kMhG7wA0PAYWENg="; + src = fetchFromGitHub { + owner = "conradludgate"; + repo = "wordle"; + rev = "v${version}"; + sha256 = "sha256-wFTvzAzboUFQg3fauIwIdRChK7rmLES92jK+8ff1D3s="; }; - cargoSha256 = "sha256-C7UMkhgez2CtddftARlwN1TjZ1N26NnZfpRiX1KkMEA="; + cargoSha256 = "sha256-PtJbLpAUH44alupFY6wX++t/QsKknn5bXvnXzdYsd9o="; meta = with lib; { description = "Wordle TUI in Rust"; diff --git a/pkgs/games/domination/default.nix b/pkgs/games/domination/default.nix index 8ef45b85019..18153dec0fb 100644 --- a/pkgs/games/domination/default.nix +++ b/pkgs/games/domination/default.nix @@ -6,6 +6,7 @@ , ant , makeWrapper , makeDesktopItem +, copyDesktopItems , nixosTests }: @@ -41,14 +42,23 @@ in stdenv.mkDerivation { jdk8 ant makeWrapper + copyDesktopItems ]; buildPhase = '' + runHook preBuild cd swingUI ant + runHook postBuild ''; + desktopItems = [ + desktopItem + editorDesktopItem + ]; + installPhase = '' + runHook preInstall # Remove unnecessary files and launchers (they'd need to be wrapped anyway) rm -r \ build/game/src.zip \ @@ -69,13 +79,8 @@ in stdenv.mkDerivation { --chdir "$out/share/domination" \ --add-flags "-cp $out/share/domination/Domination.jar net.yura.domination.ui.swinggui.SwingGUIFrame" - install -Dm644 \ - ${desktopItem}/share/applications/Domination.desktop \ - $out/share/applications/Domination.desktop - install -Dm644 \ - "${editorDesktopItem}/share/applications/Domination Map Editor.desktop" \ - "$out/share/applications/Domination Map Editor.desktop" install -Dm644 build/game/resources/icon.png $out/share/pixmaps/domination.png + runHook postInstall ''; passthru.tests = { diff --git a/pkgs/games/easyrpg-player/default.nix b/pkgs/games/easyrpg-player/default.nix index 4476c0a7a53..c95ca576eca 100644 --- a/pkgs/games/easyrpg-player/default.nix +++ b/pkgs/games/easyrpg-player/default.nix @@ -3,6 +3,7 @@ , liblcf, libpng, libsndfile ? null, libvorbis ? null, libxmp ? null , libXcursor, libXext, libXi, libXinerama, libXrandr, libXScrnSaver, libXxf86vm , mpg123 ? null, opusfile ? null, pcre, pixman, SDL2, speexdsp ? null, wildmidi ? null, zlib +, libdecor }: stdenv.mkDerivation rec { @@ -43,6 +44,7 @@ stdenv.mkDerivation rec { speexdsp wildmidi zlib + libdecor ]; meta = with lib; { diff --git a/pkgs/games/egoboo/default.nix b/pkgs/games/egoboo/default.nix index 506868efe31..4023eccec44 100644 --- a/pkgs/games/egoboo/default.nix +++ b/pkgs/games/egoboo/default.nix @@ -45,6 +45,11 @@ stdenv.mkDerivation rec { ''; */ + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: mad.o:(.bss+0x233800): multiple definition of `tile_dict'; camera.o:(.bss+0x140): first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + NIX_LDFLAGS = "-lm"; meta = { diff --git a/pkgs/games/fheroes2/default.nix b/pkgs/games/fheroes2/default.nix index ff3537cfae9..2125a0ec815 100644 --- a/pkgs/games/fheroes2/default.nix +++ b/pkgs/games/fheroes2/default.nix @@ -7,13 +7,13 @@ stdenv.mkDerivation rec { pname = "fheroes2"; - version = "0.9.14"; + version = "0.9.15"; src = fetchFromGitHub { owner = "ihhub"; repo = "fheroes2"; rev = version; - sha256 = "sha256-M5sUEOKU7KSenAAE7dUI8algB5XsbQQ1s3sDflZLsiA="; + sha256 = "sha256-bT6asrre16NuavG7X28aHdEPeHdxMBdz2o2KCB+mrbg="; }; buildInputs = [ gettext libpng SDL2 SDL2_image SDL2_mixer SDL2_ttf zlib ]; diff --git a/pkgs/games/flightgear/default.nix b/pkgs/games/flightgear/default.nix index d46ee685607..c927bc9fb43 100644 --- a/pkgs/games/flightgear/default.nix +++ b/pkgs/games/flightgear/default.nix @@ -6,7 +6,7 @@ }: let - version = "2020.3.12"; + version = "2020.3.13"; shortVersion = builtins.substring 0 6 version; data = stdenv.mkDerivation rec { pname = "flightgear-data"; @@ -14,7 +14,7 @@ let src = fetchurl { url = "mirror://sourceforge/flightgear/release-${shortVersion}/FlightGear-${version}-data.txz"; - sha256 = "sha256-gCsW9e8IuXwmJfAfxJ/nORF5W/PwCka+O8Chwm26OnY="; + sha256 = "sha256-C3iUVA7IJQ77OdXcaBnSpDphMFjmFZmn0nozQvdxSJM="; }; dontUnpack = true; @@ -32,7 +32,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "mirror://sourceforge/flightgear/release-${shortVersion}/${pname}-${version}.tar.bz2"; - sha256 = "sha256-wPeZIAiGU0zPBkzeBCO1xEgm+iZd/hWvBEr2ZcsX0Qc="; + sha256 = "sha256-Zhq/r0davIz9G6tXVZRp76ZivG0D9Y6Nl3OFAD/lqow="; }; # Of all the files in the source and data archives, there doesn't seem to be diff --git a/pkgs/games/gnugo/default.nix b/pkgs/games/gnugo/default.nix index e33c27bf9eb..3b8449ab4c7 100644 --- a/pkgs/games/gnugo/default.nix +++ b/pkgs/games/gnugo/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl }: +{ lib, stdenv, fetchurl, fetchpatch }: stdenv.mkDerivation rec { pname = "gnugo"; @@ -9,6 +9,16 @@ stdenv.mkDerivation rec { sha256 = "0wkahvqpzq6lzl5r49a4sd4p52frdmphnqsfdv7gdp24bykdfs6s"; }; + patches = [ + # Pull patch pending upstream inclusion for -fno-common toolchain support: + # https://savannah.gnu.org/patch/index.php?10208 + (fetchpatch { + name = "fno-common.patch"; + url = "https://savannah.gnu.org/patch/download.php?file_id=53240"; + sha256 = "0s96qvmx244vq5pv2nzf7x863kq2y5skzjhbpyzaajfkldbj0sw4"; + }) + ]; + hardeningDisable = [ "format" ]; meta = { diff --git a/pkgs/games/heroic/default.nix b/pkgs/games/heroic/default.nix index 565bb87f7e0..044d159cde1 100644 --- a/pkgs/games/heroic/default.nix +++ b/pkgs/games/heroic/default.nix @@ -1,4 +1,4 @@ -{ lib, fetchurl, appimageTools, gsettings-desktop-schemas, gtk3 }: +{ lib, fetchurl, appimageTools }: let pname = "heroic"; @@ -29,10 +29,6 @@ appimageTools.wrapType2 { --replace 'Exec=AppRun' 'Exec=heroic' ''; - profile = '' - export XDG_DATA_DIRS=${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS - ''; - meta = with lib; { description = "A Native GUI Epic Games Launcher for Linux, Windows and Mac"; homepage = "https://github.com/Heroic-Games-Launcher/HeroicGamesLauncher"; diff --git a/pkgs/games/liquidwar/5.nix b/pkgs/games/liquidwar/5.nix index e95371ec5ea..eab7941cbd1 100644 --- a/pkgs/games/liquidwar/5.nix +++ b/pkgs/games/liquidwar/5.nix @@ -13,7 +13,14 @@ stdenv.mkDerivation rec { hardeningDisable = [ "format" ]; - NIX_CFLAGS_COMPILE = [ "-lm" ]; + NIX_CFLAGS_COMPILE = [ + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: random.o:(.bss+0x0): multiple definition of `LW_RANDOM_ON'; game.o:(.bss+0x4): first defined here + "-fcommon" + + "-lm" + ]; meta = with lib; { description = "The classic version of a quick tactics game LiquidWar"; diff --git a/pkgs/games/osu-lazer/default.nix b/pkgs/games/osu-lazer/default.nix index bb006abad57..268090a4e5d 100644 --- a/pkgs/games/osu-lazer/default.nix +++ b/pkgs/games/osu-lazer/default.nix @@ -31,11 +31,9 @@ buildDotnetModule rec { nativeBuildInputs = [ copyDesktopItems ]; - preConfigure = '' - dotnetFlags+=( - --runtime linux-x64 - ) - ''; + dotnetFlags = [ + "--runtime linux-x64" + ]; runtimeDeps = [ ffmpeg diff --git a/pkgs/games/xivlauncher/default.nix b/pkgs/games/xivlauncher/default.nix new file mode 100644 index 00000000000..f13654dcbbe --- /dev/null +++ b/pkgs/games/xivlauncher/default.nix @@ -0,0 +1,73 @@ +{ lib, buildDotnetModule, fetchFromGitHub, dotnetCorePackages, SDL2, libsecret, glib, gnutls, aria2, steam-run +, copyDesktopItems, makeDesktopItem +, useSteamRun ? true }: + +let + rev = "6a1a59f687ac7b98698e2ebb97d82a94865e50f6"; +in + buildDotnetModule rec { + pname = "XIVLauncher"; + version = "1.0.0.9"; + + src = fetchFromGitHub { + owner = "goatcorp"; + repo = "FFXIVQuickLauncher"; + inherit rev; + sha256 = "sha256-jRyYeTg73W58OH2fWmuVkjxEdyPNqDGRbEZwxBMfdCo="; + }; + + nativeBuildInputs = [ copyDesktopItems ]; + + projectFile = "src/XIVLauncher.Core/XIVLauncher.Core.csproj"; + nugetDeps = ./deps.nix; # File generated with `nuget-to-nix path/to/src > deps.nix` + + dotnet-sdk = dotnetCorePackages.sdk_6_0; + dotnet-runtime = dotnetCorePackages.runtime_6_0; + + dotnetFlags = [ + "--runtime linux-x64" + "-p:BuildHash=${rev}" + ]; + + dotnetBuildFlags = [ + "--no-self-contained" + ]; + + postPatch = '' + substituteInPlace src/XIVLauncher.Common/Game/Patch/Acquisition/Aria/AriaHttpPatchAcquisition.cs \ + --replace 'ariaPath = "aria2c"' 'ariaPath = "${aria2}/bin/aria2c"' + ''; + + postInstall = '' + mkdir -p $out/share/pixmaps + cp src/XIVLauncher.Core/Resources/logo.png $out/share/pixmaps/xivlauncher.png + ''; + + postFixup = lib.optionalString useSteamRun '' + substituteInPlace $out/bin/XIVLauncher.Core \ + --replace 'exec' 'exec ${steam-run}/bin/steam-run' + ''; + + executables = [ "XIVLauncher.Core" ]; + + runtimeDeps = [ SDL2 libsecret glib gnutls ]; + + desktopItems = [ + (makeDesktopItem { + name = "xivlauncher"; + exec = "XIVLauncher.Core"; + icon = "xivlauncher"; + desktopName = "XIVLauncher"; + comment = meta.description; + categories = [ "Game" ]; + }) + ]; + + meta = with lib; { + description = "Custom launcher for FFXIV"; + homepage = "https://github.com/goatcorp/FFXIVQuickLauncher"; + license = licenses.gpl3; + maintainers = with maintainers; [ ashkitten ]; + platforms = [ "x86_64-linux" ]; + }; + } diff --git a/pkgs/games/xivlauncher/deps.nix b/pkgs/games/xivlauncher/deps.nix new file mode 100644 index 00000000000..24d4d2f4388 --- /dev/null +++ b/pkgs/games/xivlauncher/deps.nix @@ -0,0 +1,197 @@ +{ fetchNuGet }: [ + (fetchNuGet { pname = "Castle.Core"; version = "4.4.1"; sha256 = "13dja1jxl5zwhi0ghkgvgmqdrixn57f9hk52jy5vpaaakzr550r7"; }) + (fetchNuGet { pname = "CheapLoc"; version = "1.1.6"; sha256 = "1m6cgx9yh7h3vrq2d4f99xyvsxc9jvz8zjq1q14qgylfmyq4hx4l"; 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sha256 = "0nr1r41rak82qfa5m0lhk9mp0k93bvfd7bbd9sdzwx9mb36g28p5"; }) + (fetchNuGet { pname = "System.Threading.Tasks"; version = "4.3.0"; sha256 = "134z3v9abw3a6jsw17xl3f6hqjpak5l682k2vz39spj4kmydg6k7"; }) + (fetchNuGet { pname = "System.Threading.Tasks.Extensions"; version = "4.3.0"; sha256 = "1xxcx2xh8jin360yjwm4x4cf5y3a2bwpn2ygkfkwkicz7zk50s2z"; }) + (fetchNuGet { pname = "System.Threading.Tasks.Extensions"; version = "4.5.4"; sha256 = "0y6ncasgfcgnjrhynaf0lwpkpkmv4a07sswwkwbwb5h7riisj153"; }) + (fetchNuGet { pname = "System.Threading.ThreadPool"; version = "4.3.0"; sha256 = "027s1f4sbx0y1xqw2irqn6x161lzj8qwvnh2gn78ciiczdv10vf1"; }) + (fetchNuGet { pname = "System.Threading.Timer"; version = "4.0.1"; sha256 = "15n54f1f8nn3mjcjrlzdg6q3520571y012mx7v991x2fvp73lmg6"; }) + (fetchNuGet { pname = "System.Threading.Timer"; version = "4.3.0"; sha256 = "1nx773nsx6z5whv8kaa1wjh037id2f1cxhb69pvgv12hd2b6qs56"; }) + (fetchNuGet { pname = "System.Windows.Extensions"; version = "6.0.0"; sha256 = "1wy9pq9vn1bqg5qnv53iqrbx04yzdmjw4x5yyi09y3459vaa1sip"; }) + (fetchNuGet { pname = "System.Xml.ReaderWriter"; version = "4.3.0"; sha256 = "0c47yllxifzmh8gq6rq6l36zzvw4kjvlszkqa9wq3fr59n0hl3s1"; }) + (fetchNuGet { pname = "System.Xml.XDocument"; version = "4.3.0"; sha256 = "08h8fm4l77n0nd4i4fk2386y809bfbwqb7ih9d7564ifcxr5ssxd"; }) + (fetchNuGet { pname = "System.Xml.XmlDocument"; version = "4.3.0"; sha256 = "0bmz1l06dihx52jxjr22dyv5mxv6pj4852lx68grjm7bivhrbfwi"; }) + (fetchNuGet { pname = "Vk"; version = "1.0.25"; sha256 = "18kx3g088215803yznnmf6621wgwvgakj8hlmrb726b7zwb3x53l"; }) + (fetchNuGet { pname = "Vortice.D3DCompiler"; version = "2.1.0"; sha256 = "1ikw4k40m1vhl6q3v4lacbvmz09prqkk8zz0dms49hxjrpi0gfdh"; }) + (fetchNuGet { pname = "Vortice.Direct3D11"; version = "2.1.0"; sha256 = "05hzmkk32agbk2617yhv3wm1zjkv25w57395an4vkp14rvsz82vf"; }) + (fetchNuGet { pname = "Vortice.DirectX"; version = "2.1.0"; sha256 = "0mv3p7rs2p9rh4vylz24gmiqj0q63rmfa7mjvsqk1j1zlrkyyhlk"; }) + (fetchNuGet { pname = "Vortice.DXGI"; version = "2.1.0"; sha256 = "1d7rmqf7q287w3l7clfvp66kd0giy4n6087n9r8jj0w5r65416ls"; }) + (fetchNuGet { pname = "Vortice.Mathematics"; version = "1.3.24"; sha256 = "1fqni3lhaxddpdz060zbjjhkn5fgg7458ajxfrj3df3wjbld3bc3"; }) +] diff --git a/pkgs/misc/drivers/foomatic-filters/default.nix b/pkgs/misc/drivers/foomatic-filters/default.nix index 5804eb60930..b1095768691 100644 --- a/pkgs/misc/drivers/foomatic-filters/default.nix +++ b/pkgs/misc/drivers/foomatic-filters/default.nix @@ -25,6 +25,12 @@ stdenv.mkDerivation rec { substituteInPlace foomaticrip.c --replace /bin/bash ${stdenv.shell} ''; + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: foomatic_rip-options.o:/build/foomatic-filters-4.0.17/options.c:49: multiple definition of + # `cupsfilter'; foomatic_rip-foomaticrip.o:/build/foomatic-filters-4.0.17/foomaticrip.c:158: first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + installTargets = [ "install-cups" ]; installFlags = [ diff --git a/pkgs/misc/rich-cli/default.nix b/pkgs/misc/rich-cli/default.nix index 17ea9ffee6e..68996e4e457 100644 --- a/pkgs/misc/rich-cli/default.nix +++ b/pkgs/misc/rich-cli/default.nix @@ -1,15 +1,18 @@ { lib +, fetchFromGitHub , python3 }: python3.pkgs.buildPythonApplication rec { pname = "rich-cli"; - version = "1.7.0"; + version = "1.8.0"; format = "pyproject"; - src = python3.pkgs.fetchPypi { - inherit pname version; - sha256 = "sha256-fporylec9H+9G2v8D0O32ek7OQs3YRSma1xOpakClqk="; + src = fetchFromGitHub { + owner = "Textualize"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-mV5b/J9wX9niiYtlmAUouaAm9mY2zTtDmex7FNWcezQ="; }; nativeBuildInputs = with python3.pkgs; [ @@ -26,7 +29,7 @@ python3.pkgs.buildPythonApplication rec { postPatch = '' substituteInPlace pyproject.toml \ - --replace 'rich = "^12.3.0"' 'rich = "*"' + --replace 'rich = "^12.4.0"' 'rich = "*"' ''; pythonImportsCheck = [ diff --git a/pkgs/misc/wiki-tui/default.nix b/pkgs/misc/wiki-tui/default.nix index 1c954de3822..cc98cf46d07 100644 --- a/pkgs/misc/wiki-tui/default.nix +++ b/pkgs/misc/wiki-tui/default.nix @@ -2,20 +2,20 @@ rustPlatform.buildRustPackage rec { pname = "wiki-tui"; - version = "0.4.7"; + version = "0.4.8"; src = fetchFromGitHub { owner = "Builditluc"; repo = pname; rev = "v${version}"; - sha256 = "sha256-qoj5rg0YeBWQuU/HU84wOSG9y9p4Q1DFbqsh61mYnUc="; + sha256 = "sha256-/u0segKHrrtXfEjOmpnQ/iFbsM+VfsZKTpyc1IfuOU8="; }; buildInputs = [ ncurses openssl ] ++ lib.optional stdenv.isDarwin Security; nativeBuildInputs = [ pkg-config ]; - cargoSha256 = "sha256-btSWvlObvn08cAWVMM4R0aciYz8swRFZjX+WDhALj3M="; + cargoSha256 = "sha256-3xvaEzqAz/U8CkdGYXLBnxrgW1raeKuzRsmD+0Sd4iQ="; # Tests fail with this error: `found argument --test-threads which was not expected` doCheck = false; diff --git a/pkgs/os-specific/darwin/apple-source-releases/Libsystem/default.nix b/pkgs/os-specific/darwin/apple-source-releases/Libsystem/default.nix index 86c91e9b55c..6f8124dbac4 100644 --- a/pkgs/os-specific/darwin/apple-source-releases/Libsystem/default.nix +++ b/pkgs/os-specific/darwin/apple-source-releases/Libsystem/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, buildPackages -, appleDerivation', cpio, xnu, Libc, Libm, libdispatch, Libinfo +, appleDerivation', xnu, Libc, Libm, libdispatch, Libinfo , dyld, Csu, architecture, libclosure, CarbonHeaders, ncurses, CommonCrypto , copyfile, removefile, libresolvHeaders, libresolv, Libnotify, libplatform, libpthread , mDNSResponder, launchd, libutilHeaders, hfsHeaders, darling, darwin-stubs @@ -11,15 +11,21 @@ appleDerivation' stdenv { dontBuild = true; dontFixup = true; - nativeBuildInputs = [ cpio ]; - installPhase = '' export NIX_ENFORCE_PURITY= mkdir -p $out/lib $out/include + function copyHierarchy () { + mkdir -p $1 + while read f; do + mkdir -p $1/$(dirname $f) + cp --parents -pn $f $1 + done + } + # Set up our include directories - (cd ${xnu}/include && find . -name '*.h' -or -name '*.defs' | cpio -pdm $out/include) + (cd ${xnu}/include && find . -name '*.h' -or -name '*.defs' | copyHierarchy $out/include) cp ${xnu}/Library/Frameworks/Kernel.framework/Versions/A/Headers/Availability*.h $out/include cp ${xnu}/Library/Frameworks/Kernel.framework/Versions/A/Headers/stdarg.h $out/include @@ -28,10 +34,10 @@ appleDerivation' stdenv { ${CommonCrypto} ${copyfile} ${removefile} ${libresolvHeaders} \ ${Libnotify} ${libplatform} ${mDNSResponder} ${launchd} \ ${libutilHeaders} ${libpthread} ${hfsHeaders}; do - (cd $dep/include && find . -name '*.h' | cpio -pdm $out/include) + (cd $dep/include && find . -name '*.h' | copyHierarchy $out/include) done - (cd ${buildPackages.darwin.cctools.dev}/include/mach-o && find . -name '*.h' | cpio -pdm $out/include/mach-o) + (cd ${buildPackages.darwin.cctools.dev}/include/mach-o && find . -name '*.h' | copyHierarchy $out/include/mach-o) mkdir -p $out/include/os diff --git a/pkgs/os-specific/darwin/apple-source-releases/Libsystem/headers.txt b/pkgs/os-specific/darwin/apple-source-releases/Libsystem/headers.txt index 09b0ab41045..cdca44c7292 100644 --- a/pkgs/os-specific/darwin/apple-source-releases/Libsystem/headers.txt +++ b/pkgs/os-specific/darwin/apple-source-releases/Libsystem/headers.txt @@ -71,6 +71,7 @@ architecture/i386/table.h architecture/i386/tss.h arpa/ftp.h arpa/inet.h +arpa/nameser.h arpa/nameser_compat.h arpa/telnet.h arpa/tftp.h @@ -956,6 +957,7 @@ mpool.h msgcat.h nameser.h nc_tparm.h +ncurses.h ncurses_dll.h ndbm.h net/bpf.h diff --git a/pkgs/os-specific/darwin/dockutil/default.nix b/pkgs/os-specific/darwin/dockutil/default.nix index d937ce8fd12..5e4187f0728 100644 --- a/pkgs/os-specific/darwin/dockutil/default.nix +++ b/pkgs/os-specific/darwin/dockutil/default.nix @@ -1,24 +1,29 @@ -{ lib, stdenv, fetchFromGitHub }: - +{ lib, stdenv, fetchurl, libarchive, p7zip }: stdenv.mkDerivation rec { pname = "dockutil"; - version = "2.0.5"; + version = "3.0.2"; - src = fetchFromGitHub { - owner = "kcrawford"; - repo = "dockutil"; - rev = version; - sha256 = "sha256-8tDkueCTCtvxc7owp3K9Tsrn4hL79CM04zBNv7AcHgA="; + src = fetchurl { + url = + "https://github.com/kcrawford/dockutil/releases/download/${version}/dockutil-${version}.pkg"; + sha256 = "175137ea747e83ed221d60b18b712b256ed31531534cde84f679487d337668fd"; }; dontBuild = true; + nativeBuildInputs = [ libarchive p7zip ]; + + unpackPhase = '' + 7z x $src + bsdtar -xf Payload~ + ''; + installPhase = '' runHook preInstall - mkdir -p $out/bin - install -Dm755 scripts/dockutil -t $out/bin - + mkdir -p $out/usr/local/bin + install -Dm755 usr/local/bin/dockutil -t $out/usr/local/bin + ln -rs $out/usr/local/bin/dockutil $out/bin/dockutil runHook postInstall ''; diff --git a/pkgs/os-specific/darwin/goku/default.nix b/pkgs/os-specific/darwin/goku/default.nix index 32a7f20befd..af70aaccc46 100644 --- a/pkgs/os-specific/darwin/goku/default.nix +++ b/pkgs/os-specific/darwin/goku/default.nix @@ -6,11 +6,11 @@ stdenv.mkDerivation rec { pname = "goku"; - version = "0.5.1"; + version = "0.5.2"; src = fetchurl { url = "https://github.com/yqrashawn/GokuRakuJoudo/releases/download/v${version}/goku.zip"; - sha256 = "7c9304a5b4265575ca154bc0ebc04fcf812d14981775966092946cf82f65c782"; + sha256 = "506eccdabedc68c112778b13ded65099327267c2e3fd488916e3a340bc312954"; }; nativeBuildInputs = [ diff --git a/pkgs/os-specific/darwin/moltenvk/default.nix b/pkgs/os-specific/darwin/moltenvk/default.nix index b2bc7e376b5..14d6287c479 100644 --- a/pkgs/os-specific/darwin/moltenvk/default.nix +++ b/pkgs/os-specific/darwin/moltenvk/default.nix @@ -192,6 +192,7 @@ stdenvNoCC.mkDerivation rec { homepage = "https://github.com/KhronosGroup/MoltenVK"; changelog = "https://github.com/KhronosGroup/MoltenVK/releases"; maintainers = [ lib.maintainers.reckenrode ]; + hydraPlatforms = [ ]; # Prevent building on Hydra until MoltenVK no longer requires Xcode. license = lib.licenses.asl20; platforms = lib.platforms.darwin; }; diff --git a/pkgs/os-specific/darwin/sketchybar/default.nix b/pkgs/os-specific/darwin/sketchybar/default.nix index cc5c4ae2045..d85bdf0b65c 100644 --- a/pkgs/os-specific/darwin/sketchybar/default.nix +++ b/pkgs/os-specific/darwin/sketchybar/default.nix @@ -3,20 +3,20 @@ let inherit (stdenv.hostPlatform) system; target = { - "aarch64-darwin" = "arm"; + "aarch64-darwin" = "arm64"; "x86_64-darwin" = "x86"; }.${system} or (throw "Unsupported system: ${system}"); in stdenv.mkDerivation rec { pname = "sketchybar"; - version = "2.5.0"; + version = "2.5.2"; src = fetchFromGitHub { owner = "FelixKratz"; repo = "SketchyBar"; rev = "v${version}"; - sha256 = "sha256-ucTyJhRhSVyE4E/x6PtFz7nHRUg6cKKVOrRpPs39iO8="; + sha256 = "sha256-xkgNPVrGxmi8377+G1HQ8SdwS0fOnGhwYy43yLRyvF0="; }; buildInputs = [ Carbon Cocoa SkyLight ] @@ -28,7 +28,7 @@ stdenv.mkDerivation rec { installPhase = '' mkdir -p $out/bin - cp ./bin/sketchybar_${target} $out/bin/sketchybar + cp ./bin/sketchybar $out/bin/sketchybar ''; meta = with lib; { diff --git a/pkgs/os-specific/linux/audit/default.nix b/pkgs/os-specific/linux/audit/default.nix index 6d14a3293fc..bda8d8ab30c 100644 --- a/pkgs/os-specific/linux/audit/default.nix +++ b/pkgs/os-specific/linux/audit/default.nix @@ -2,7 +2,7 @@ lib, stdenv, buildPackages, fetchurl, fetchpatch, runCommand, autoreconfHook, - autoconf, automake, libtool, + autoconf, automake, libtool, bash, # Enabling python support while cross compiling would be possible, but # the configure script tries executing python to gather info instead of # relying on python3-config exclusively @@ -21,9 +21,11 @@ stdenv.mkDerivation rec { outputs = [ "bin" "dev" "out" "man" ]; + strictDeps = true; depsBuildBuild = [ buildPackages.stdenv.cc ]; - nativeBuildInputs = [ autoreconfHook ]; - buildInputs = lib.optionals enablePython [ python3 swig ]; + nativeBuildInputs = [ autoreconfHook ] + ++ lib.optionals enablePython [ python3 swig ]; + buildInputs = [ bash ]; configureFlags = [ # z/OS plugin is not useful on Linux, diff --git a/pkgs/os-specific/linux/batman-adv/default.nix b/pkgs/os-specific/linux/batman-adv/default.nix index 79dc48a6ea9..3d22720b962 100644 --- a/pkgs/os-specific/linux/batman-adv/default.nix +++ b/pkgs/os-specific/linux/batman-adv/default.nix @@ -16,19 +16,6 @@ stdenv.mkDerivation rec { sha256 = cfg.sha256.${pname}; }; - patches = [ - # batman-adv: make mc_forwarding atomic - (fetchpatch { - url = "https://git.open-mesh.org/batman-adv.git/blobdiff_plain/c142c00f6b1a2ad5f5d74202fb1249e6a6575407..56db7c0540e733a1f063ccd6bab1b537a80857eb:/net/batman-adv/multicast.c"; - hash = "sha256-2zXg8mZ3/iK9E/kyn+wHSrlLq87HuK72xuXojQ9KjkI="; - }) - # batman-adv: compat: Add atomic mc_fowarding support for stable kernels - (fetchpatch { - url = "https://git.open-mesh.org/batman-adv.git/blobdiff_plain/f07a0c37ab278fb6a9e95cad89429b1282f1ab59..350adcaec82fbaa358a2406343b6130ac8dad126:/net/batman-adv/multicast.c"; - hash = "sha256-r/Xp5bmDo9GVfAF6bn2Xq+cOq5ddQe+D5s/h37uI6bM="; - }) - ]; - nativeBuildInputs = kernel.moduleBuildDependencies; makeFlags = kernel.makeFlags ++ [ "KERNELPATH=${kernel.dev}/lib/modules/${kernel.modDirVersion}/build" diff --git a/pkgs/os-specific/linux/batman-adv/version.nix b/pkgs/os-specific/linux/batman-adv/version.nix index 12a7f26a336..dd222787450 100644 --- a/pkgs/os-specific/linux/batman-adv/version.nix +++ b/pkgs/os-specific/linux/batman-adv/version.nix @@ -1,9 +1,9 @@ { - version = "2022.0"; + version = "2022.1"; sha256 = { - batman-adv = "sha256-STOHBbwgdwmshNdmaI5wJXEAnIJ8CjIHiOpR+4h3FKo="; - alfred = "sha256-q7odrGHsz81jKeczHQVV/syTd2D7NsbPVc5sHXUc/Zg="; - batctl = "sha256-iTlm+aLWpQch3hJM5i2l096cIOBVdspIK8VwTMWm9z0="; + batman-adv = "sha256-bQQdNTCr1LJJq/Wpb8Ki4kFDG/lEO1R/2yWi2P0ymkA="; + alfred = "sha256-OgrCuybgyz8nMtSHNmmgoi6YJej5qOerrJhjY/J1CX8="; + batctl = "sha256-h+iak4lxuGJCJoG7NBBOmytLZRLR0WXelTYw3zjWGmg="; }; } diff --git a/pkgs/os-specific/linux/bluez/default.nix b/pkgs/os-specific/linux/bluez/default.nix index 1d93174ec65..3805f99e0a5 100644 --- a/pkgs/os-specific/linux/bluez/default.nix +++ b/pkgs/os-specific/linux/bluez/default.nix @@ -138,6 +138,7 @@ in stdenv.mkDerivation rec { filename=$(basename $files) install -Dm755 tools/$filename $out/bin/$filename done + install -Dm755 attrib/gatttool $out/bin/gatttool ''; enableParallelBuilding = true; diff --git a/pkgs/os-specific/linux/disk-indicator/default.nix b/pkgs/os-specific/linux/disk-indicator/default.nix index 44dd19b27df..f5c7f3bc774 100644 --- a/pkgs/os-specific/linux/disk-indicator/default.nix +++ b/pkgs/os-specific/linux/disk-indicator/default.nix @@ -2,31 +2,40 @@ stdenv.mkDerivation { pname = "disk-indicator"; - version = "unstable-2014-05-19"; + version = "unstable-2018-12-18"; src = fetchFromGitHub { owner = "MeanEYE"; repo = "Disk-Indicator"; - rev = "51ef4afd8141b8d0659cbc7dc62189c56ae9c2da"; - sha256 = "sha256-bRaVEe18VUmyftXzMNmGuL5gZ/dKCipuEDYrnHo1XYI="; + rev = "ec2d2f6833f038f07a72d15e2d52625c23e10b12"; + sha256 = "sha256-cRqgIxF6H1WyJs5hhaAXVdWAlv6t22BZLp3p/qRlCSM="; }; buildInputs = [ libX11 ]; - patchPhase = '' - substituteInPlace ./makefile --replace "COMPILER=c99" "COMPILER=gcc -std=c99" - substituteInPlace ./makefile --replace "COMPILE_FLAGS=" "COMPILE_FLAGS=-O2 " + postPatch = '' + # avoid -Werror + substituteInPlace Makefile --replace "-Werror" "" + # avoid host-specific options + substituteInPlace Makefile --replace "-march=native" "" ''; - buildPhase = "make -f makefile"; - - NIX_CFLAGS_COMPILE = "-Wno-error=cpp"; + postConfigure = '' + patchShebangs ./configure.sh + ./configure.sh --all + ''; - hardeningDisable = [ "fortify" ]; + makeFlags = [ + "COMPILER=${stdenv.cc.targetPrefix}cc" + ]; installPhase = '' + runHook preInstall + mkdir -p "$out/bin" cp ./disk_indicator "$out/bin/" + + runHook postInstall ''; meta = { diff --git a/pkgs/os-specific/linux/dpdk/default.nix b/pkgs/os-specific/linux/dpdk/default.nix index 1e4f50e42df..2f06401d49a 100644 --- a/pkgs/os-specific/linux/dpdk/default.nix +++ b/pkgs/os-specific/linux/dpdk/default.nix @@ -9,14 +9,14 @@ let mod = kernel != null; - dpdkVersion = "21.11"; + dpdkVersion = "22.03"; in stdenv.mkDerivation rec { pname = "dpdk"; version = "${dpdkVersion}" + lib.optionalString mod "-${kernel.version}"; src = fetchurl { url = "https://fast.dpdk.org/rel/dpdk-${dpdkVersion}.tar.xz"; - sha256 = "sha256-Mkbj7WjuKzaaXYviwGzxCKZp4Vf01Bxby7sha/Wr06E="; + sha256 = "sha256-st5fCLzVcz+Q1NfmwDJRWQja2PyNJnrGolNELZuDp8U="; }; nativeBuildInputs = [ diff --git a/pkgs/os-specific/linux/firmware/b43-firmware/6.30.163.46.nix b/pkgs/os-specific/linux/firmware/b43-firmware/6.30.163.46.nix index 622b89b1bae..92c179726d2 100644 --- a/pkgs/os-specific/linux/firmware/b43-firmware/6.30.163.46.nix +++ b/pkgs/os-specific/linux/firmware/b43-firmware/6.30.163.46.nix @@ -14,8 +14,8 @@ stdenv.mkDerivation rec { sourceRoot = "."; installPhase = '' - mkdir $out - b43-fwcutter -w $out *.wl_apsta.o + mkdir -p $out/lib/firmware + b43-fwcutter -w $out/lib/firmware *.wl_apsta.o ''; meta = with lib; { diff --git a/pkgs/os-specific/linux/iproute/mptcp.nix b/pkgs/os-specific/linux/iproute/mptcp.nix index 8a4cde0c79e..e43af52bb34 100644 --- a/pkgs/os-specific/linux/iproute/mptcp.nix +++ b/pkgs/os-specific/linux/iproute/mptcp.nix @@ -1,4 +1,4 @@ -{ lib, iproute2, fetchFromGitHub }: +{ lib, iproute2, fetchFromGitHub, fetchpatch }: iproute2.overrideAttrs (oa: rec { pname = "iproute_mptcp"; @@ -15,8 +15,19 @@ iproute2.overrideAttrs (oa: rec { patchShebangs configure ''; - # We override "patches" to never apply any iproute2 patches: - patches = [ ]; + patches = [ + # We override "patches" to never apply any iproute2 patches: + ] ++ [ + # iproute-mptcp patches: + + # Pull upstream fix for -fno-common toolchain support: + # https://github.com/multipath-tcp/iproute-mptcp/pull/8 + (fetchpatch { + name = "fno-common.patch"; + url = "https://github.com/multipath-tcp/iproute-mptcp/commit/7aebfde8624c978f6f73b03142892f802d21cc0b.patch"; + sha256 = "098402sjdm10r9xggz6naygnfjs74d9k3s2wc2aczx0d2zayhff8"; + }) + ]; meta = with lib; { homepage = "https://github.com/multipath-tcp/iproute-mptcp"; diff --git a/pkgs/os-specific/linux/kernel/common-config.nix b/pkgs/os-specific/linux/kernel/common-config.nix index fdf54d302bf..d25e20bac8b 100644 --- a/pkgs/os-specific/linux/kernel/common-config.nix +++ b/pkgs/os-specific/linux/kernel/common-config.nix @@ -883,6 +883,8 @@ let # Disable the firmware helper fallback, udev doesn't implement it any more FW_LOADER_USER_HELPER_FALLBACK = option no; + FW_LOADER_COMPRESS = option yes; + HOTPLUG_PCI_ACPI = yes; # PCI hotplug using ACPI HOTPLUG_PCI_PCIE = yes; # PCI-Expresscard hotplug support diff --git a/pkgs/os-specific/linux/kernel/hardened/patches.json b/pkgs/os-specific/linux/kernel/hardened/patches.json index b7e783b73b7..e66a432836d 100644 --- a/pkgs/os-specific/linux/kernel/hardened/patches.json +++ b/pkgs/os-specific/linux/kernel/hardened/patches.json @@ -2,61 +2,61 @@ "4.14": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-4.14.278-hardened1.patch", - "sha256": "10sihdsfc7zcn2n70gym790ql5lkgiy1q7lv7vavyxbg3j6yzayb", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.14.278-hardened1/linux-hardened-4.14.278-hardened1.patch" + "name": "linux-hardened-4.14.280-hardened1.patch", + "sha256": "0hkn7rbgvnv9v7pzrg5g6ygmdzlrjl3yama9kp9aw0xw2akghmb4", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.14.280-hardened1/linux-hardened-4.14.280-hardened1.patch" }, - "sha256": "1glb6z3nicd2lzhvwcqj54642agk0bbg022wnc3ckld5ngpd9miw", - "version": "4.14.278" + "sha256": "01jr0f7mq919s7xxvv8sc1mg6isc1ggij33l2s0n6jvykm23ghrr", + "version": "4.14.280" }, "4.19": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-4.19.242-hardened1.patch", - "sha256": "05fmppfvimppvqi1ghvg43jz8sdd56dffvy9sazpl53vpz3bysy6", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.19.242-hardened1/linux-hardened-4.19.242-hardened1.patch" + "name": "linux-hardened-4.19.244-hardened1.patch", + "sha256": "063q4vd0spk602s4if751341jaansh0764qq7fhy764j31678n0j", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/4.19.244-hardened1/linux-hardened-4.19.244-hardened1.patch" }, - "sha256": "18k5fbzclk7g657bs8idwqjk7hakzx6256b1a3506sy29q4zvg2r", - "version": "4.19.242" + "sha256": "1g9562v6ny196rw2n3kj43nrz65qa7imwnmfasvj6x8fm8bdhz79", + "version": "4.19.244" }, "5.10": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-5.10.115-hardened1.patch", - "sha256": "09sgj4wrsi5j5hz8k3zs8zxq4g0a27dnhpjs1nxvqdz6b8f4xkap", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.10.115-hardened1/linux-hardened-5.10.115-hardened1.patch" + "name": "linux-hardened-5.10.117-hardened1.patch", + "sha256": "1l53sjknm8q76r1jljm321cmh6ic36pc9w5rmi68lbds19ndfpx3", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.10.117-hardened1/linux-hardened-5.10.117-hardened1.patch" }, - "sha256": "0w9gwizyqjgsj93dqqvlh6bqkmpzjajhj09319nqncc95yrigr7m", - "version": "5.10.115" + "sha256": "1iyw3nmsga2binmrhfnzsf1pvn2bs21a8jw6vm89k26z5h8zfgkh", + "version": "5.10.117" }, "5.15": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-5.15.39-hardened1.patch", - "sha256": "137zp9z15adf464awh5cl371qvhv2c79yfnva3k31zp0ivjb7kgg", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.15.39-hardened1/linux-hardened-5.15.39-hardened1.patch" + "name": "linux-hardened-5.15.41-hardened1.patch", + "sha256": "1y98rvn4qyx8w8bjchfzsd7g9gkhfm20cwaj3p88sgq7q81kyz8s", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.15.41-hardened1/linux-hardened-5.15.41-hardened1.patch" }, - "sha256": "1bfpiyccjggysd04flaana0x69n1lcpckzpw1v6kh3ly9xil31l8", - "version": "5.15.39" + "sha256": "07jrsr54rvhry3g401h58r1773zinq49dbrkb9v1p6q27gyb2z1w", + "version": "5.15.41" }, "5.17": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-5.17.7-hardened1.patch", - "sha256": "0p2s6blyzi0ynfrqm5l8ayh41kjkrmznlly6znh3djc1k3l5fc8v", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.17.7-hardened1/linux-hardened-5.17.7-hardened1.patch" + "name": "linux-hardened-5.17.9-hardened1.patch", + "sha256": "0n7zz04vnajpsfn662fxx75jinnr0kpqwzyypgwn99v4lmsxvza1", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.17.9-hardened1/linux-hardened-5.17.9-hardened1.patch" }, - "sha256": "16ccf7n6fns9z93c65lchn5v3fgl9c5vkr1v6p0c1xifn7v7xxi2", - "version": "5.17.7" + "sha256": "0y2rmn86z3cvgv71b6sjjyafnlbanlib1kjpjjqzjbgg86y2890p", + "version": "5.17.9" }, "5.4": { "patch": { "extra": "-hardened1", - "name": "linux-hardened-5.4.193-hardened1.patch", - "sha256": "1c24chfjkv5yk3gzawxygfl6l58i7a6l2swdk35g5sv8s6p0a9jl", - "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.4.193-hardened1/linux-hardened-5.4.193-hardened1.patch" + "name": "linux-hardened-5.4.195-hardened1.patch", + "sha256": "1q7a211jw22nl1yz3k3cv6g4h7csir0wwyypzij54xbg3k7by0p9", + "url": "https://github.com/anthraxx/linux-hardened/releases/download/5.4.195-hardened1/linux-hardened-5.4.195-hardened1.patch" }, - "sha256": "187jfk9hf52n5z9yv56vq1knp3kdcbyk5w5k98ziwcbdjm1x65hd", - "version": "5.4.193" + "sha256": "078380qhds2jwfmrchna6p27wpfb74pvnj4xiyc5k38gysfmnbzj", + "version": "5.4.195" } } diff --git a/pkgs/os-specific/linux/kernel/linux-4.14.nix b/pkgs/os-specific/linux/kernel/linux-4.14.nix index 942be8bf6d6..4c4d7c93245 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.14.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.14.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "4.14.278"; + version = "4.14.280"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "1glb6z3nicd2lzhvwcqj54642agk0bbg022wnc3ckld5ngpd9miw"; + sha256 = "01jr0f7mq919s7xxvv8sc1mg6isc1ggij33l2s0n6jvykm23ghrr"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.19.nix b/pkgs/os-specific/linux/kernel/linux-4.19.nix index 2db4ec01e72..ea79db67ed7 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.19.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.19.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "4.19.242"; + version = "4.19.244"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "18k5fbzclk7g657bs8idwqjk7hakzx6256b1a3506sy29q4zvg2r"; + sha256 = "1g9562v6ny196rw2n3kj43nrz65qa7imwnmfasvj6x8fm8bdhz79"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.9.nix b/pkgs/os-specific/linux/kernel/linux-4.9.nix index 9de95b245a1..9f82f1805e9 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.9.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.9.nix @@ -1,12 +1,12 @@ { buildPackages, fetchurl, perl, buildLinux, nixosTests, stdenv, ... } @ args: buildLinux (args // rec { - version = "4.9.313"; + version = "4.9.315"; extraMeta.branch = "4.9"; extraMeta.broken = stdenv.isAarch64; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "1p3vr1h01ph6x0pxrr6y6k5c4nrhvq650dfngv5mkrgsc5w7ffz0"; + sha256 = "1171p90s00jxg1clyz8kp81ilmdzygg131mxysr6lpkaisahkjg6"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-5.10.nix b/pkgs/os-specific/linux/kernel/linux-5.10.nix index 4cba62d8e62..daeabc53837 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.10.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.10.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.10.115"; + version = "5.10.117"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "0w9gwizyqjgsj93dqqvlh6bqkmpzjajhj09319nqncc95yrigr7m"; + sha256 = "1iyw3nmsga2binmrhfnzsf1pvn2bs21a8jw6vm89k26z5h8zfgkh"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-5.15.nix b/pkgs/os-specific/linux/kernel/linux-5.15.nix index 1a4dcab875c..f2d550a285b 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.15.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.15.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.15.39"; + version = "5.15.41"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -15,6 +15,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "1bfpiyccjggysd04flaana0x69n1lcpckzpw1v6kh3ly9xil31l8"; + sha256 = "07jrsr54rvhry3g401h58r1773zinq49dbrkb9v1p6q27gyb2z1w"; }; } // (args.argsOverride or { })) diff --git a/pkgs/os-specific/linux/kernel/linux-5.17.nix b/pkgs/os-specific/linux/kernel/linux-5.17.nix index 5bd54a59533..46384061684 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.17.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.17.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.17.7"; + version = "5.17.9"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "16ccf7n6fns9z93c65lchn5v3fgl9c5vkr1v6p0c1xifn7v7xxi2"; + sha256 = "0y2rmn86z3cvgv71b6sjjyafnlbanlib1kjpjjqzjbgg86y2890p"; }; } // (args.argsOverride or { })) diff --git a/pkgs/os-specific/linux/kernel/linux-5.4.nix b/pkgs/os-specific/linux/kernel/linux-5.4.nix index 4f23f695afe..1d5bbc07832 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.4.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.4.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.4.193"; + version = "5.4.195"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "187jfk9hf52n5z9yv56vq1knp3kdcbyk5w5k98ziwcbdjm1x65hd"; + sha256 = "078380qhds2jwfmrchna6p27wpfb74pvnj4xiyc5k38gysfmnbzj"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-libre.nix b/pkgs/os-specific/linux/kernel/linux-libre.nix index 78646dddf96..971847a895a 100644 --- a/pkgs/os-specific/linux/kernel/linux-libre.nix +++ b/pkgs/os-specific/linux/kernel/linux-libre.nix @@ -1,8 +1,8 @@ { stdenv, lib, fetchsvn, linux , scripts ? fetchsvn { url = "https://www.fsfla.org/svn/fsfla/software/linux-libre/releases/branches/"; - rev = "18713"; - sha256 = "10744jp1i7z3jwpc42vrmdfpq1yblf3vy17yb04xdfhimkflw77p"; + rev = "18738"; + sha256 = "024iw4352h8b1kbbimqgid95h868swiw45wn91sjkpmwr612v6kd"; } , ... }: diff --git a/pkgs/os-specific/linux/kernel/linux-rt-5.10.nix b/pkgs/os-specific/linux/kernel/linux-rt-5.10.nix index 7162fe8ac19..b4f80d11380 100644 --- a/pkgs/os-specific/linux/kernel/linux-rt-5.10.nix +++ b/pkgs/os-specific/linux/kernel/linux-rt-5.10.nix @@ -6,7 +6,7 @@ , ... } @ args: let - version = "5.10.109-rt65"; # updated by ./update-rt.sh + version = "5.10.115-rt67"; # updated by ./update-rt.sh branch = lib.versions.majorMinor version; kversion = builtins.elemAt (lib.splitString "-" version) 0; in buildLinux (args // { @@ -18,14 +18,14 @@ in buildLinux (args // { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${kversion}.tar.xz"; - sha256 = "1p0k46isy2wzzms801lrnb59f1nb9mhywjj7fnkrwrj9nbn25yqq"; + sha256 = "0w9gwizyqjgsj93dqqvlh6bqkmpzjajhj09319nqncc95yrigr7m"; }; kernelPatches = let rt-patch = { name = "rt"; patch = fetchurl { url = "mirror://kernel/linux/kernel/projects/rt/${branch}/older/patch-${version}.patch.xz"; - sha256 = "0w7bs5kmwvbyfy5js218ys42s8i51m8v0mbkfhiynlpm3iph357q"; + sha256 = "16igpdqq8nqzf98pkrs9v692d1r1fpnwrh3qxrkja0fgzswdwc0j"; }; }; in [ rt-patch ] ++ kernelPatches; diff --git a/pkgs/os-specific/linux/kernel/linux-rt-5.4.nix b/pkgs/os-specific/linux/kernel/linux-rt-5.4.nix index bb404fc59e9..7ee37c5b261 100644 --- a/pkgs/os-specific/linux/kernel/linux-rt-5.4.nix +++ b/pkgs/os-specific/linux/kernel/linux-rt-5.4.nix @@ -6,7 +6,7 @@ , ... } @ args: let - version = "5.4.188-rt73"; # updated by ./update-rt.sh + version = "5.4.193-rt74"; # updated by ./update-rt.sh branch = lib.versions.majorMinor version; kversion = builtins.elemAt (lib.splitString "-" version) 0; in buildLinux (args // { @@ -14,14 +14,14 @@ in buildLinux (args // { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${kversion}.tar.xz"; - sha256 = "1g7xf2jx1hx580f42yirfgv9v0f9f88wzxxx0wiwx7wcqbyqpg4z"; + sha256 = "187jfk9hf52n5z9yv56vq1knp3kdcbyk5w5k98ziwcbdjm1x65hd"; }; kernelPatches = let rt-patch = { name = "rt"; patch = fetchurl { url = "mirror://kernel/linux/kernel/projects/rt/${branch}/older/patch-${version}.patch.xz"; - sha256 = "17qx5xrchgss7zxg9lg91mqh0v3irx355003g7rj12h8y5r16l58"; + sha256 = "1gn4ii5pr0870ba481nqbd5rxk7ajrarv1p5mipfi42x07rpn7c2"; }; }; in [ rt-patch ] ++ kernelPatches; diff --git a/pkgs/os-specific/linux/kernel/xanmod-kernels.nix b/pkgs/os-specific/linux/kernel/xanmod-kernels.nix index 8464b9ad25f..14c4d00dccd 100644 --- a/pkgs/os-specific/linux/kernel/xanmod-kernels.nix +++ b/pkgs/os-specific/linux/kernel/xanmod-kernels.nix @@ -2,15 +2,15 @@ let stableVariant = { - version = "5.15.34"; + version = "5.15.40"; suffix = "xanmod1"; - hash = "sha256-sfrcaFhrdvupygXvajGyl6ruuBu+vFsAKjLyINyV3pw="; + hash = "sha256-P9pRPfzBVQNhWp6ulDiBgV/ki2C0CTbIRV6KRhUD+vQ="; }; edgeVariant = { - version = "5.17.2"; + version = "5.17.8"; suffix = "xanmod1"; - hash = "sha256-DK6yFZewqmr/BXFW5tqKXtWb1OLfqokZRQLOQxvBg6Q="; + hash = "sha256-Q8YmBeocolr6Ds2inwV299Td6/zE8RTA1SWve5ZykAs="; }; xanmodKernelFor = { version, suffix, hash }: buildLinux (args // rec { @@ -69,7 +69,7 @@ let extraMeta = { branch = lib.versions.majorMinor version; - maintainers = with lib.maintainers; [ fortuneteller2k lovesegfault ]; + maintainers = with lib.maintainers; [ fortuneteller2k lovesegfault atemu ]; description = "Built with custom settings and new features built to provide a stable, responsive and smooth desktop experience"; broken = stdenv.isAarch64; }; diff --git a/pkgs/os-specific/linux/kmscube/default.nix b/pkgs/os-specific/linux/kmscube/default.nix index 53b4cd60fb1..b9da3790170 100644 --- a/pkgs/os-specific/linux/kmscube/default.nix +++ b/pkgs/os-specific/linux/kmscube/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchgit, autoreconfHook, libdrm, libX11, libGL, mesa, pkg-config }: +{ lib, stdenv, fetchgit, fetchpatch, autoreconfHook, libdrm, libX11, libGL, mesa, pkg-config }: stdenv.mkDerivation { pname = "kmscube"; @@ -10,6 +10,15 @@ stdenv.mkDerivation { sha256 = "1q5b5yvyfj3127385mp1bfmcbnpnbdswdk8gspp7g4541xk4k933"; }; + patches = [ + # Pull upstream patch for -fno-common toolchains. + (fetchpatch { + name = "fno-common.patch"; + url = "https://gitlab.freedesktop.org/mesa/kmscube/-/commit/908ef39864442c0807954af5d3f88a3da1a6f8a5.patch"; + sha256 = "1gxn3b50mvjlc25234839v5z29r8fd9di4176a3yx4gbsz8cc5vi"; + }) + ]; + nativeBuildInputs = [ autoreconfHook pkg-config ]; buildInputs = [ libdrm libX11 libGL mesa ]; diff --git a/pkgs/os-specific/linux/latencytop/default.nix b/pkgs/os-specific/linux/latencytop/default.nix index 56e412379f8..a48abf85831 100644 --- a/pkgs/os-specific/linux/latencytop/default.nix +++ b/pkgs/os-specific/linux/latencytop/default.nix @@ -1,10 +1,16 @@ -{ lib, stdenv, fetchurl, ncurses, glib, pkg-config, gtk2 }: +{ lib, stdenv, fetchurl, ncurses, glib, pkg-config, gtk2, util-linux }: stdenv.mkDerivation rec { pname = "latencytop"; version = "0.5"; - patchPhase = "sed -i s,/usr,$out, Makefile"; + postPatch = '' + sed -i s,/usr,$out, Makefile + + # Fix #171609 + substituteInPlace fsync.c --replace /bin/mount ${util-linux}/bin/mount + ''; + preInstall = "mkdir -p $out/sbin"; src = fetchurl { diff --git a/pkgs/os-specific/linux/light/default.nix b/pkgs/os-specific/linux/light/default.nix index 995381c5340..6caa8e39450 100644 --- a/pkgs/os-specific/linux/light/default.nix +++ b/pkgs/os-specific/linux/light/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, autoreconfHook, coreutils }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, autoreconfHook, coreutils }: stdenv.mkDerivation rec { version = "1.2.2"; @@ -10,6 +10,16 @@ stdenv.mkDerivation rec { sha256 = "1a70zcf88ifsnwll486aicjnh48zisdf8f7vi34ihw61kdadsq9s"; }; + patches = [ + # Pull upstream fix for -fno-common toolchains: + # https://github.com/haikarainen/light/pull/135 + (fetchpatch { + name = "fno-common.patch"; + url = "https://github.com/haikarainen/light/commit/eae912ca7ff3356805e47739114861d2b6ae7ec0.patch"; + sha256 = "15jp8hm5scl0myiy1jmvd6m52lhx5jscvi3rgb5siwakmnkgzx9j"; + }) + ]; + configureFlags = [ "--with-udev" ]; nativeBuildInputs = [ autoreconfHook ]; diff --git a/pkgs/os-specific/linux/microcode/intel.nix b/pkgs/os-specific/linux/microcode/intel.nix index 41091181ee8..002284e2154 100644 --- a/pkgs/os-specific/linux/microcode/intel.nix +++ b/pkgs/os-specific/linux/microcode/intel.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "microcode-intel"; - version = "20220419"; + version = "20220510"; src = fetchFromGitHub { owner = "intel"; repo = "Intel-Linux-Processor-Microcode-Data-Files"; rev = "microcode-${version}"; - sha256 = "sha256-i3OhOEqyK6gJfRIPewPGb4/6k6lO0atmedEqJ2e+66U="; + sha256 = "sha256-x+8qyC7YP7co/7qLhaAtjMtyeANaZJ/r41iFl1Mut+M="; }; nativeBuildInputs = [ iucode-tool libarchive ]; diff --git a/pkgs/os-specific/linux/nix-ld/default.nix b/pkgs/os-specific/linux/nix-ld/default.nix index dcab99cabfe..9fcec3c5a13 100644 --- a/pkgs/os-specific/linux/nix-ld/default.nix +++ b/pkgs/os-specific/linux/nix-ld/default.nix @@ -1,49 +1,56 @@ -{ stdenv, meson, ninja, lib, nixosTests, fetchFromGitHub }: +{ lib +, stdenv +, fetchFromGitHub +, meson +, ninja +, nixosTests +}: let - self = stdenv.mkDerivation { - name = "nix-ld"; - src = fetchFromGitHub { - owner = "Mic92"; - repo = "nix-ld"; - rev = "1.0.0"; - sha256 = "sha256-QYPg8wPpq7q5Xd1jW17Lh36iKFSsVkN/gWYoQRv2XoU="; - }; - - doCheck = true; - - nativeBuildInputs = [ meson ninja ]; - - mesonFlags = [ - "-Dnix-system=${stdenv.system}" - ]; - - hardeningDisable = [ - "stackprotector" - ]; - - postInstall = '' - mkdir -p $out/nix-support - basename $(< ${stdenv.cc}/nix-support/dynamic-linker) > $out/nix-support/ld-name - ''; - - passthru.tests.nix-ld = nixosTests.nix-ld; - passthru.ldPath = let - libDir = if stdenv.system == "x86_64-linux" || - stdenv.system == "mips64-linux" || - stdenv.system == "powerpc64le-linux" - then - "/lib64" - else - "/lib"; - ldName = lib.fileContents "${self}/nix-support/ld-name"; - in "${libDir}/${ldName}"; - - meta = with lib; { - description = "Run unpatched dynamic binaries on NixOS"; - homepage = "https://github.com/Mic92/nix-ld"; - license = licenses.mit; - maintainers = with maintainers; [ mic92 ]; - platforms = platforms.linux; - }; + libDir = if builtins.elem stdenv.system [ "x86_64-linux" "mips64-linux" "powerpc64le-linux" ] + then "/lib64" + else "/lib"; +in +stdenv.mkDerivation rec { + pname = "nix-ld"; + version = "1.0.2"; + + src = fetchFromGitHub { + owner = "mic92"; + repo = "nix-ld"; + rev = version; + sha256 = "sha256-DlWU5i/MykqWgB9vstYbECy3e+XagXWCxi+XDJNey0s="; + }; + + doCheck = true; + + nativeBuildInputs = [ meson ninja ]; + + mesonFlags = [ + "-Dnix-system=${stdenv.system}" + ]; + + hardeningDisable = [ + "stackprotector" + ]; + + postInstall = '' + mkdir -p $out/nix-support + + ldpath=${libDir}/$(basename $(< ${stdenv.cc}/nix-support/dynamic-linker)) + echo "$ldpath" > $out/nix-support/ldpath + mkdir -p $out/lib/tmpfiles.d/ + cat > $out/lib/tmpfiles.d/nix-ld.conf <<EOF + L+ $ldpath - - - - $out/libexec/nix-ld + EOF + ''; + + passthru.tests.nix-ld = nixosTests.nix-ld; + + meta = with lib; { + description = "Run unpatched dynamic binaries on NixOS"; + homepage = "https://github.com/Mic92/nix-ld"; + license = licenses.mit; + maintainers = with maintainers; [ mic92 ]; + platforms = platforms.unix; }; -in self +} diff --git a/pkgs/os-specific/linux/restool/default.nix b/pkgs/os-specific/linux/restool/default.nix index 4f488c28323..83c7c93ffcd 100644 --- a/pkgs/os-specific/linux/restool/default.nix +++ b/pkgs/os-specific/linux/restool/default.nix @@ -18,6 +18,12 @@ stdenv.mkDerivation rec { "VERSION=${version}" ]; + postPatch = '' + # -Werror makes this derivation fragile on compiler version upgrades, patch + # it out. + sed -i /-Werror/d Makefile + ''; + preFixup = '' # wrapProgram interacts badly with the ls-main tool, which relies on the # shell's $0 argument to figure out which operation to run (busybox-style diff --git a/pkgs/os-specific/linux/rt-tests/default.nix b/pkgs/os-specific/linux/rt-tests/default.nix new file mode 100644 index 00000000000..278a370d47d --- /dev/null +++ b/pkgs/os-specific/linux/rt-tests/default.nix @@ -0,0 +1,34 @@ +{ stdenv +, lib +, makeWrapper +, fetchurl +, numactl +, python3 +}: + +stdenv.mkDerivation rec { + pname = "rt-tests"; + version = "2.3"; + + src = fetchurl { + url = "https://git.kernel.org/pub/scm/utils/rt-tests/rt-tests.git/snapshot/${pname}-${version}.tar.gz"; + sha256 = "Q+rNdpRdsmW2gcsrfwg12EzpvO6qlEP/Mb/OWQMNmr8="; + }; + + nativeBuildInputs = [ makeWrapper ]; + buildInputs = [ numactl python3 ]; + + makeFlags = [ "prefix=$(out)" "DESTDIR=" "PYLIB=$(out)/${python3.sitePackages}" ]; + + postInstall = '' + wrapProgram "$out/bin/determine_maximum_mpps.sh" --prefix PATH : $out/bin + ''; + + meta = with lib; { + homepage = "https://git.kernel.org/pub/scm/utils/rt-tests/rt-tests.git"; + description = "Suite of real-time tests - cyclictest, hwlatdetect, pip_stress, pi_stress, pmqtest, ptsematest, rt-migrate-test, sendme, signaltest, sigwaittest, svsematest"; + platforms = platforms.linux; + maintainers = with maintainers; [ poelzi ]; + license = licenses.gpl2; + }; +} diff --git a/pkgs/os-specific/linux/sssd/default.nix b/pkgs/os-specific/linux/sssd/default.nix index 22602d12bd5..41e8f0d72e7 100644 --- a/pkgs/os-specific/linux/sssd/default.nix +++ b/pkgs/os-specific/linux/sssd/default.nix @@ -1,9 +1,9 @@ -{ lib, stdenv, fetchFromGitHub, autoreconfHook, glibc, augeas, dnsutils, c-ares, curl, +{ lib, stdenv, fetchFromGitHub, autoreconfHook, makeWrapper, glibc, augeas, dnsutils, c-ares, curl, cyrus_sasl, ding-libs, libnl, libunistring, nss, samba, nfs-utils, doxygen, python3, pam, popt, talloc, tdb, tevent, pkg-config, ldb, openldap, pcre2, libkrb5, cifs-utils, glib, keyutils, dbus, fakeroot, libxslt, libxml2, libuuid, systemd, nspr, check, cmocka, uid_wrapper, p11-kit, - nss_wrapper, ncurses, Po4a, http-parser, jansson, + nss_wrapper, ncurses, Po4a, http-parser, jansson, jose, docbook_xsl, docbook_xml_dtd_44, nixosTests, withSudo ? false }: @@ -13,13 +13,13 @@ let in stdenv.mkDerivation rec { pname = "sssd"; - version = "2.6.3"; + version = "2.7.0"; src = fetchFromGitHub { owner = "SSSD"; repo = pname; rev = version; - sha256 = "sha256-m0ArsN9xopfBPnHTiPDEOPuhQHQ2zoICGwVM7P05k3U="; + sha256 = "sha256-aGPt2ZXMnd8TXC+YhVGYZKbsl3YYkjmYF2yDQB4t/BY="; }; postPatch = '' @@ -54,13 +54,13 @@ stdenv.mkDerivation rec { ''; enableParallelBuilding = true; - nativeBuildInputs = [ autoreconfHook pkg-config doxygen ]; + nativeBuildInputs = [ autoreconfHook makeWrapper pkg-config doxygen ]; buildInputs = [ augeas dnsutils c-ares curl cyrus_sasl ding-libs libnl libunistring nss samba nfs-utils p11-kit python3 popt talloc tdb tevent ldb pam openldap pcre2 libkrb5 cifs-utils glib keyutils dbus fakeroot libxslt libxml2 libuuid python3.pkgs.ldap systemd nspr check cmocka uid_wrapper - nss_wrapper ncurses Po4a http-parser jansson ]; + nss_wrapper ncurses Po4a http-parser jansson jose ]; makeFlags = [ "SGML_CATALOG_FILES=${docbookFiles}" @@ -87,6 +87,11 @@ stdenv.mkDerivation rec { rm -f "$out"/modules/ldb/memberof.la find "$out" -depth -type d -exec rmdir --ignore-fail-on-non-empty {} \; ''; + postFixup = '' + for f in $out/bin/sss{ctl,_cache,_debuglevel,_override,_seed}; do + wrapProgram $f --prefix LDB_MODULES_PATH : $out/modules/ldb + done + ''; passthru.tests = { inherit (nixosTests) sssd sssd-ldap; }; diff --git a/pkgs/os-specific/linux/sysdig/default.nix b/pkgs/os-specific/linux/sysdig/default.nix index 39c07f48a29..4f5f3b585da 100644 --- a/pkgs/os-specific/linux/sysdig/default.nix +++ b/pkgs/os-specific/linux/sysdig/default.nix @@ -1,27 +1,50 @@ { lib, stdenv, fetchFromGitHub, fetchpatch, cmake, kernel, installShellFiles, pkg-config , luajit, ncurses, perl, jsoncpp, libb64, openssl, curl, jq, gcc, elfutils, tbb, protobuf, grpc +, libyamlcpp, nlohmann_json }: with lib; let # Compare with https://github.com/draios/sysdig/blob/dev/cmake/modules/falcosecurity-libs.cmake - libsRev = "2160111cd088aea9ae2235d3385ecb0b1ab6623c"; - libsSha256 = "sha256-TOuxXtrxujyAjzAtlX3/eCfM16mwxnmZ6Wg44SG0dTs="; + libsRev = "e5c53d648f3c4694385bbe488e7d47eaa36c229a"; + libsSha256 = "sha256-pG10y5PpDqaF/cq8oAvax5B/ls2UTRQd7tCfBjWVf0U="; + + # Compare with https://github.com/falcosecurity/libs/blob/master/cmake/modules/valijson.cmake#L17 + valijson = fetchFromGitHub { + owner = "tristanpenman"; + repo = "valijson"; + rev = "v0.6"; + sha256 = "sha256-ZD19Q2MxMQd3yEKbY90GFCrerie5/jzgO8do4JQDoKM="; + }; + in stdenv.mkDerivation rec { pname = "sysdig"; - version = "0.28.0"; + version = "0.29.3"; src = fetchFromGitHub { owner = "draios"; repo = "sysdig"; rev = version; - sha256 = "sha256-oE3vCmOw+gcmvGqj7Xk5injpNC/YThckJMNg5XRFhME="; + sha256 = "sha256-dMLeroOd9CgvmgQdPfX8oBxQSyksZi/hP4vO03JhlF0="; }; nativeBuildInputs = [ cmake perl installShellFiles pkg-config ]; buildInputs = [ - luajit ncurses jsoncpp libb64 openssl curl jq gcc elfutils tbb protobuf grpc + luajit + ncurses + libb64 + openssl + curl + jq + gcc + elfutils + tbb + protobuf + grpc + libyamlcpp + jsoncpp + nlohmann_json ] ++ optionals (kernel != null) kernel.moduleBuildDependencies; hardeningDisable = [ "pic" ]; @@ -34,7 +57,7 @@ stdenv.mkDerivation rec { sha256 = libsSha256; }} libs chmod -R +w libs - cmakeFlagsArray+=("-DFALCOSECURITY_LIBS_SOURCE_DIR=$(pwd)/libs") + cmakeFlagsArray+=("-DFALCOSECURITY_LIBS_SOURCE_DIR=$(pwd)/libs" "-DVALIJSON_INCLUDE=${valijson}/include") ''; cmakeFlags = [ @@ -47,6 +70,10 @@ stdenv.mkDerivation rec { NIX_CFLAGS_COMPILE = "-DluaL_reg=luaL_Reg -DluaL_getn(L,i)=((int)lua_objlen(L,i))"; preConfigure = '' + if ! grep -q "${libsRev}" cmake/modules/falcosecurity-libs.cmake; then + echo "falcosecurity-libs checksum needs to be updated!" + exit 1 + fi cmakeFlagsArray+=(-DCMAKE_EXE_LINKER_FLAGS="-ltbb -lcurl -labsl_synchronization") '' + optionalString (kernel != null) '' export INSTALL_MOD_PATH="$out" diff --git a/pkgs/os-specific/linux/systemd/default.nix b/pkgs/os-specific/linux/systemd/default.nix index 9e914132ef2..14d5e29c372 100644 --- a/pkgs/os-specific/linux/systemd/default.nix +++ b/pkgs/os-specific/linux/systemd/default.nix @@ -178,6 +178,13 @@ stdenv.mkDerivation { # need (AFAICT). # See https://github.com/systemd/systemd/pull/20479 for upstream discussion. ./0019-core-handle-lookup-paths-being-symlinks.patch + + # fixes reproducability of dbus xml files + # Should no longer be necessary with v251. + (fetchpatch { + url = "https://github.com/systemd/systemd/pull/22174.patch"; + sha256 = "sha256-RVhxUEUiISgRlIP/AhU+w1VHfDQw2W16cFl2TXXyxno="; + }) ] ++ lib.optional stdenv.hostPlatform.isMusl ( let oe-core = fetchzip { @@ -641,12 +648,6 @@ stdenv.mkDerivation { ''; postInstall = '' - # sysinit.target: Don't depend on - # systemd-tmpfiles-setup.service. This interferes with NixOps's - # send-keys feature (since sshd.service depends indirectly on - # sysinit.target). - mv $out/lib/systemd/system/sysinit.target.wants/systemd-tmpfiles-setup-dev.service $out/lib/systemd/system/multi-user.target.wants/ - mkdir -p $out/example/systemd mv $out/lib/{modules-load.d,binfmt.d,sysctl.d,tmpfiles.d} $out/example mv $out/lib/systemd/{system,user} $out/example/systemd diff --git a/pkgs/os-specific/windows/default.nix b/pkgs/os-specific/windows/default.nix index 15e3d7f89ab..c34f97a17db 100644 --- a/pkgs/os-specific/windows/default.nix +++ b/pkgs/os-specific/windows/default.nix @@ -37,6 +37,8 @@ lib.makeScope newScope (self: with self; { stdenv = crossThreadsStdenv; }; + npiperelay = callPackage ./npiperelay { }; + pthreads = callPackage ./pthread-w32 { }; wxMSW = callPackage ./wxMSW-2.8 { }; diff --git a/pkgs/os-specific/windows/npiperelay/default.nix b/pkgs/os-specific/windows/npiperelay/default.nix new file mode 100644 index 00000000000..edc83a27e55 --- /dev/null +++ b/pkgs/os-specific/windows/npiperelay/default.nix @@ -0,0 +1,23 @@ +{ lib, buildGoModule, fetchFromGitHub }: + +buildGoModule rec { + pname = "npiperelay"; + version = "0.1.0"; + + src = fetchFromGitHub { + owner = "jstarks"; + repo = "npiperelay"; + rev = "v${version}"; + sha256 = "sha256-cg4aZmpTysc8m1euxIO2XPv8OMnBk1DwhFcuIFHF/1o="; + }; + + vendorSha256 = null; + + meta = { + description = "Access Windows named pipes from WSL"; + homepage = "https://github.com/jstarks/npiperelay"; + license = lib.licenses.mit; + maintainers = [ lib.maintainers.shlevy ]; + platforms = lib.platforms.windows; + }; +} diff --git a/pkgs/servers/bloat/default.nix b/pkgs/servers/bloat/default.nix new file mode 100644 index 00000000000..bea2f705449 --- /dev/null +++ b/pkgs/servers/bloat/default.nix @@ -0,0 +1,42 @@ +{ lib +, buildGoModule +, fetchgit +, unstableGitUpdater +}: + +buildGoModule { + pname = "bloat"; + version = "unstable-2022-03-31"; + + src = fetchgit { + url = "git://git.freesoftwareextremist.com/bloat"; + rev = "a38d29a43592601d37d671db8748f0980071c0c4"; + sha256 = "sha256-7Hxt0QlOYMBMvDS40fpfSItGkd5nYFQmmjJIevNyeF8="; + }; + + vendorSha256 = null; + + postInstall = '' + mkdir -p $out/share/bloat + cp -r templates $out/share/bloat/templates + cp -r static $out/share/bloat/static + sed \ + -e "s%=templates%=$out/share/bloat/templates%g" \ + -e "s%=static%=$out/share/bloat/static%g" \ + < bloat.conf > $out/share/bloat/bloat.conf.example + ''; + + passthru.updateScript = unstableGitUpdater { }; + + meta = with lib; { + description = "A web client for Pleroma and Mastodon"; + longDescription = '' + A lightweight web client for Pleroma and Mastodon. + Does not require JavaScript to display text, images, audio and videos. + ''; + homepage = "https://bloat.freesoftwareextremist.com"; + downloadPage = "https://git.freesoftwareextremist.com/bloat/"; + license = licenses.cc0; + maintainers = with maintainers; [ fgaz ]; + }; +} diff --git a/pkgs/servers/computing/storm/default.nix b/pkgs/servers/computing/storm/default.nix index cf6427c860c..53644d62e65 100644 --- a/pkgs/servers/computing/storm/default.nix +++ b/pkgs/servers/computing/storm/default.nix @@ -7,12 +7,12 @@ stdenv.mkDerivation rec { pname = "apache-storm"; - version = "2.3.0"; + version = "2.4.0"; name = "${pname}-${version}"; src = fetchurl { url = "mirror://apache/storm/${name}/${name}.tar.gz"; - sha256 = "sha256-ScIlWyZjPG/ZY5nFIDOeRZ/NopoOfm0Mh3XO/P9sNjY="; + sha256 = "sha256-VFNcaISPBRMGR5l/P6/pGnK7lHClDW2AmXJ00gzxwMY="; }; nativeBuildInputs = [ zip unzip ]; diff --git a/pkgs/servers/dendrite/default.nix b/pkgs/servers/dendrite/default.nix index 2b12a47edc8..71843ee8c76 100644 --- a/pkgs/servers/dendrite/default.nix +++ b/pkgs/servers/dendrite/default.nix @@ -1,17 +1,18 @@ -{ lib, buildGoModule, fetchFromGitHub, fetchurl, nixosTests, postgresql, postgresqlTestHook }: +{ lib, buildGoModule, fetchFromGitHub +, nixosTests, postgresql, postgresqlTestHook }: buildGoModule rec { pname = "matrix-dendrite"; - version = "0.8.4"; + version = "0.8.5"; src = fetchFromGitHub { owner = "matrix-org"; repo = "dendrite"; rev = "v${version}"; - sha256 = "sha256-w4un+TdFTzfVZltvo6ZAPQ3B9HJvnGlJW+LmZHuYk1M="; + sha256 = "sha256-MPWvBUI6Mqt3f5UY6lpTBwPpihW+QSNq1M3FnIff+mM="; }; - vendorSha256 = "sha256-AJ7Hn23aji/cXioDaOSyF8XD3Mr135DZf7KbUW1SoJ4="; + vendorSha256 = "sha256-OXy2xuwTLPNvBnVB6wj/YRW/XMiekjTubRRPVX9bxdQ="; checkInputs = [ postgresqlTestHook @@ -31,8 +32,8 @@ buildGoModule rec { }; meta = with lib; { - homepage = "https://matrix.org"; - description = "Dendrite is a second-generation Matrix homeserver written in Go!"; + homepage = "https://matrix-org.github.io/dendrite"; + description = "A second-generation Matrix homeserver written in Go"; license = licenses.asl20; maintainers = teams.matrix.members; platforms = platforms.unix; diff --git a/pkgs/servers/dns/bind/default.nix b/pkgs/servers/dns/bind/default.nix index 435e3ae45fb..7b56061a4aa 100644 --- a/pkgs/servers/dns/bind/default.nix +++ b/pkgs/servers/dns/bind/default.nix @@ -9,11 +9,11 @@ stdenv.mkDerivation rec { pname = "bind"; - version = "9.18.1"; + version = "9.18.3"; src = fetchurl { url = "https://downloads.isc.org/isc/bind9/${version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-V8ev2HFpTWFctN77HBvW7QIzUJQ9dFhBTbjUk+9WBCc="; + sha256 = "sha256-CtjadzvZPLoO9mzIGZlpjr35w+UfrtXlyMHrdcrSrm8="; }; outputs = [ "out" "lib" "dev" "man" "dnsutils" "host" ]; diff --git a/pkgs/servers/frr/default.nix b/pkgs/servers/frr/default.nix index 833710f1fec..5e5cd767002 100644 --- a/pkgs/servers/frr/default.nix +++ b/pkgs/servers/frr/default.nix @@ -1,8 +1,6 @@ { lib , stdenv , fetchFromGitHub -, fetchpatch -, python3Packages # build time , autoreconfHook @@ -25,6 +23,7 @@ , pcre2 , python3 , readline +, rtrlib # tests , nettools @@ -33,31 +32,22 @@ stdenv.mkDerivation rec { pname = "frr"; - version = "8.1"; + version = "8.2.2"; src = fetchFromGitHub { owner = "FRRouting"; repo = pname; rev = "${pname}-${version}"; - sha256 = "sha256-hJcgLiPBxOE5QEh0RhtZhM3dOxFqW5H0TUjN+aP4qRk="; + hash = "sha256-zuOgbRxyyhFdBplH/K1fpyD+KUWa7FXPDmGKF5Kb7SQ="; }; - patches = [ - (fetchpatch { - # Fix clippy build on aarch64-linux - # https://github.com/FRRouting/frr/issues/10267 - url = "https://github.com/FRRouting/frr/commit/3942ee1f7bc754dd0dd9ae79f89d0f2635be334f.patch"; - sha256 = "1i0acfy5k9fbm9cxchrcvkhyw9704srq4wm2hyjqgdimm2dq7ryf"; - }) - ]; - nativeBuildInputs = [ autoreconfHook bison flex perl pkg-config - python3Packages.sphinx + python3.pkgs.sphinx texinfo ]; @@ -73,39 +63,42 @@ stdenv.mkDerivation rec { pcre2 python3 readline + rtrlib ] ++ lib.optionals stdenv.isLinux [ libcap ]; configureFlags = [ - "--sysconfdir=/etc/frr" - "--localstatedir=/run/frr" - "--sbindir=$(out)/libexec/frr" "--disable-exampledir" - "--enable-user=frr" - "--enable-group=frr" "--enable-configfile-mask=0640" + "--enable-group=frr" "--enable-logfile-mask=0640" - "--enable-vty-group=frrvty" - "--enable-snmp" "--enable-multipath=64" + "--enable-snmp" + "--enable-user=frr" + "--enable-vty-group=frrvty" + "--localstatedir=/run/frr" + "--sbindir=$(out)/libexec/frr" + "--sysconfdir=/etc/frr" + "--enable-rpki" ]; postPatch = '' - substituteInPlace tools/frr-reload --replace /usr/lib/frr/ $out/libexec/frr/ + substituteInPlace tools/frr-reload \ + --replace /usr/lib/frr/ $out/libexec/frr/ ''; doCheck = true; + checkInputs = [ nettools - python3Packages.pytest + python3.pkgs.pytest ]; enableParallelBuilding = true; - passthru.tests = { inherit (nixosTests) frr; }; - meta = with lib; { + homepage = "https://frrouting.org/"; description = "FRR BGP/OSPF/ISIS/RIP/RIPNG routing daemon suite"; longDescription = '' FRRouting (FRR) is a free and open source Internet routing protocol suite @@ -129,9 +122,10 @@ stdenv.mkDerivation rec { infrastructure, web 2.0 businesses, hyperscale services, and Fortune 500 private clouds. ''; - homepage = "https://frrouting.org/"; license = with licenses; [ gpl2Plus lgpl21Plus ]; - platforms = platforms.unix; maintainers = with maintainers; [ woffs ]; + platforms = platforms.unix; }; + + passthru.tests = { inherit (nixosTests) frr; }; } diff --git a/pkgs/servers/gemini/agate/default.nix b/pkgs/servers/gemini/agate/default.nix index ae198707ec5..2240536021d 100644 --- a/pkgs/servers/gemini/agate/default.nix +++ b/pkgs/servers/gemini/agate/default.nix @@ -1,25 +1,16 @@ -{ lib, stdenv, nixosTests, fetchFromGitHub, fetchpatch, rustPlatform, libiconv, Security }: +{ lib, stdenv, nixosTests, fetchFromGitHub, rustPlatform, libiconv, Security }: rustPlatform.buildRustPackage rec { pname = "agate"; - version = "3.2.3"; + version = "3.2.4"; src = fetchFromGitHub { owner = "mbrubeck"; repo = pname; rev = "v${version}"; - sha256 = "sha256-nkWk/0TIAHcYQjxbg0HnT+4S4Cinl22WfqHb9U6u5eI="; + sha256 = "sha256-NyHs/9kRBGqmh44MSRzYb7CSvEB0RlmL9l5QpGEwDhY="; }; - cargoSha256 = "sha256-aF86QpizJ+lMNmN9DQKA9o1QZWZObyQ3v3+HmT/s02g="; - - patches = [ - # https://github.com/mbrubeck/agate/pull/143 - (fetchpatch { - name = "fix-port-collision.patch"; - url = "https://github.com/mbrubeck/agate/commit/2f5d7878ec9d0dd51762c4c7680fc9f825d8ecd5.patch"; - sha256 = "sha256-NEFmfb0y97O2W96YggD+MgcN7tlFEi9T4FNzLCND77s="; - }) - ]; + cargoSha256 = "sha256-V0MLXOLLmKnk4Iyhbu+EomsxOX6RLYHIsi/IwWiqmcg="; buildInputs = lib.optionals stdenv.isDarwin [ libiconv Security ]; diff --git a/pkgs/servers/heisenbridge/default.nix b/pkgs/servers/heisenbridge/default.nix index f217c993234..3d4ef94dda4 100644 --- a/pkgs/servers/heisenbridge/default.nix +++ b/pkgs/servers/heisenbridge/default.nix @@ -1,13 +1,13 @@ { lib, fetchFromGitHub, fetchpatch, python3 }: python3.pkgs.buildPythonApplication rec { pname = "heisenbridge"; - version = "1.12.0"; + version = "1.13.0"; src = fetchFromGitHub { owner = "hifi"; repo = pname; - rev = "v${version}"; - sha256 = "sha256-10y0sWpOLbjbGBpOjr1/tJrhcOsCwcm2sSO5kHfmJZA="; + rev = "refs/tags/v${version}"; + sha256 = "sha256-3YCYLhJqZAWIwpwOd8J1+uYsxw0q6jQy35Vp+ttVKhI="; }; postPatch = '' diff --git a/pkgs/servers/home-assistant/component-packages.nix b/pkgs/servers/home-assistant/component-packages.nix index df5e7ed3b98..581cd277f15 100644 --- a/pkgs/servers/home-assistant/component-packages.nix +++ b/pkgs/servers/home-assistant/component-packages.nix @@ -2,7 +2,7 @@ # Do not edit! { - version = "2022.5.4"; + version = "2022.5.5"; components = { "abode" = ps: with ps; [ abodepy @@ -1449,7 +1449,8 @@ "logi_circle" = ps: with ps; [ aiohttp-cors ha-ffmpeg - ]; # missing inputs: logi_circle + logi-circle + ]; "london_air" = ps: with ps; [ ]; "london_underground" = ps: with ps; [ @@ -2032,7 +2033,8 @@ poolsense ]; "powerwall" = ps: with ps; [ - ]; # missing inputs: tesla-powerwall + tesla-powerwall + ]; "profiler" = ps: with ps; [ guppy3 objgraph @@ -2339,7 +2341,8 @@ py17track ]; "sharkiq" = ps: with ps; [ - ]; # missing inputs: sharkiq + sharkiq + ]; "shell_command" = ps: with ps; [ ]; "shelly" = ps: with ps; [ @@ -2439,7 +2442,7 @@ paho-mqtt ]; "snmp" = ps: with ps; [ - pysnmplib + pysnmp ]; "solaredge" = ps: with ps; [ solaredge @@ -2539,7 +2542,8 @@ statsd ]; "steam_online" = ps: with ps; [ - ]; # missing inputs: steamodd + steamodd + ]; "steamist" = ps: with ps; [ aiohttp-cors aiosteamist @@ -2884,7 +2888,8 @@ "vacuum" = ps: with ps; [ ]; "vallox" = ps: with ps; [ - ]; # missing inputs: vallox-websocket-api + vallox-websocket-api + ]; "vasttrafik" = ps: with ps; [ ]; # missing inputs: vtjp "velbus" = ps: with ps; [ @@ -3449,6 +3454,7 @@ "logbook" "logentries" "logger" + "logi_circle" "london_air" "lookin" "lovelace" @@ -3557,6 +3563,7 @@ "plugwise" "point" "poolsense" + "powerwall" "profiler" "prometheus" "prosegur" @@ -3614,6 +3621,7 @@ "sentry" "senz" "seventeentrack" + "sharkiq" "shell_command" "shelly" "shopping_list" @@ -3658,6 +3666,7 @@ "startca" "statistics" "statsd" + "steam_online" "steamist" "stookalert" "stream" @@ -3732,6 +3741,7 @@ "utility_meter" "uvc" "vacuum" + "vallox" "velbus" "venstar" "vera" diff --git a/pkgs/servers/home-assistant/default.nix b/pkgs/servers/home-assistant/default.nix index abaf16079d8..ff5c69b04fb 100644 --- a/pkgs/servers/home-assistant/default.nix +++ b/pkgs/servers/home-assistant/default.nix @@ -179,7 +179,7 @@ let extraPackagesFile = writeText "home-assistant-packages" (lib.concatMapStringsSep "\n" (pkg: pkg.pname) extraBuildInputs); # Don't forget to run parse-requirements.py after updating - hassVersion = "2022.5.4"; + hassVersion = "2022.5.5"; in python.pkgs.buildPythonApplication rec { pname = "homeassistant"; @@ -197,7 +197,7 @@ in python.pkgs.buildPythonApplication rec { owner = "home-assistant"; repo = "core"; rev = version; - hash = "sha256-5juHG1bVeFYrjpAAlt3GoCRmBvyCSOdnSw1WuaNWF8w="; + hash = "sha256-uVB3Yg3f0fNkq2rav7hmbJ9IAMg0UIrdMshJVgOharA="; }; # leave this in, so users don't have to constantly update their downstream patch handling diff --git a/pkgs/servers/http/trafficserver/default.nix b/pkgs/servers/http/trafficserver/default.nix index 06d640a5bc0..083d165d5ba 100644 --- a/pkgs/servers/http/trafficserver/default.nix +++ b/pkgs/servers/http/trafficserver/default.nix @@ -50,11 +50,11 @@ stdenv.mkDerivation rec { pname = "trafficserver"; - version = "9.1.1"; + version = "9.1.2"; src = fetchzip { url = "mirror://apache/trafficserver/trafficserver-${version}.tar.bz2"; - sha256 = "sha256-oicRqKFE6hOpcNG9o3BmrMujtEzi4hrPhBWaljOW+VI="; + sha256 = "sha256-eRpyTdwwO5EzrVpt9fF6VEYGZjHb905nQJd065wY5RU="; }; patches = [ @@ -65,12 +65,7 @@ stdenv.mkDerivation rec { sha256 = "0z1ikgpp00rzrrcqh97931586yn9wbksgai9xlkcjd5cg8gq0150"; }) - # Fix build against ncurses-6.3: - # https://github.com/apache/trafficserver/pull/8437 - (fetchpatch { - url = "https://github.com/apache/trafficserver/commit/66c86c6b082903a92b9db33c60e3ed947e77d540.patch"; - sha256 = "1hgpp80xnnjr4k5i6gcllrb7dw4q4xcdrkwxpc1xk2np5cbyxd16"; - }) + ./fix-catch2-version-incompatibility.patch ]; # NOTE: The upstream README indicates that flex is needed for some features, @@ -115,6 +110,8 @@ stdenv.mkDerivation rec { substituteInPlace configure --replace '/usr/bin/file' '${file}/bin/file' + # TODO: remove after the following change has been released + # https://github.com/apache/trafficserver/pull/8683 cp ${catch2}/include/catch2/catch.hpp tests/include/catch.hpp '' + lib.optionalString stdenv.isLinux '' substituteInPlace configure \ diff --git a/pkgs/servers/http/trafficserver/fix-catch2-version-incompatibility.patch b/pkgs/servers/http/trafficserver/fix-catch2-version-incompatibility.patch new file mode 100644 index 00000000000..248f9d4ef31 --- /dev/null +++ b/pkgs/servers/http/trafficserver/fix-catch2-version-incompatibility.patch @@ -0,0 +1,43 @@ +diff --git a/src/tscore/unit_tests/test_History.cc b/src/tscore/unit_tests/test_History.cc +index 3e699139da0..7505f10aa4c 100644 +--- a/src/tscore/unit_tests/test_History.cc ++++ b/src/tscore/unit_tests/test_History.cc +@@ -59,10 +59,10 @@ TEST_CASE("History", "[libts][History]") + REQUIRE(history[2].reentrancy == static_cast<short>(NO_REENTRANT)); + + history[0].location.str(buf, sizeof(buf)); +- REQUIRE(string_view{buf} == "test_History.cc:48 (____C_A_T_C_H____T_E_S_T____0)"); ++ REQUIRE(string_view{buf} == "test_History.cc:48 (C_A_T_C_H_T_E_S_T_0)"); + + history[1].location.str(buf, sizeof(buf)); +- REQUIRE(string_view{buf} == "test_History.cc:49 (____C_A_T_C_H____T_E_S_T____0)"); ++ REQUIRE(string_view{buf} == "test_History.cc:49 (C_A_T_C_H_T_E_S_T_0)"); + + ts::LocalBufferWriter<128> w; + SM<HISTORY_DEFAULT_SIZE> *sm = new SM<HISTORY_DEFAULT_SIZE>; +@@ -71,10 +71,10 @@ TEST_CASE("History", "[libts][History]") + SM_REMEMBER(sm, 3, NO_REENTRANT); + + w.print("{}", sm->history[0].location); +- REQUIRE(w.view() == "test_History.cc:69 (____C_A_T_C_H____T_E_S_T____0)"); ++ REQUIRE(w.view() == "test_History.cc:69 (C_A_T_C_H_T_E_S_T_0)"); + + w.reset().print("{}", sm->history[1].location); +- REQUIRE(w.view() == "test_History.cc:70 (____C_A_T_C_H____T_E_S_T____0)"); ++ REQUIRE(w.view() == "test_History.cc:70 (C_A_T_C_H_T_E_S_T_0)"); + + REQUIRE(sm->history[0].event == 1); + REQUIRE(sm->history[0].reentrancy == 1); +@@ -106,10 +106,10 @@ TEST_CASE("History", "[libts][History]") + REQUIRE(sm2->history.overflowed() == true); + + w.reset().print("{}", sm2->history[0].location); +- REQUIRE(w.view() == "test_History.cc:103 (____C_A_T_C_H____T_E_S_T____0)"); ++ REQUIRE(w.view() == "test_History.cc:103 (C_A_T_C_H_T_E_S_T_0)"); + + w.reset().print("{}", sm2->history[1].location); +- REQUIRE(w.view() == "test_History.cc:98 (____C_A_T_C_H____T_E_S_T____0)"); ++ REQUIRE(w.view() == "test_History.cc:98 (C_A_T_C_H_T_E_S_T_0)"); + + sm2->history.clear(); + REQUIRE(sm2->history.size() == 0); diff --git a/pkgs/servers/icingaweb2/ipl.nix b/pkgs/servers/icingaweb2/ipl.nix index e9075d7d043..9d21951a299 100644 --- a/pkgs/servers/icingaweb2/ipl.nix +++ b/pkgs/servers/icingaweb2/ipl.nix @@ -2,13 +2,13 @@ stdenvNoCC.mkDerivation rec { pname = "icingaweb2-ipl"; - version = "0.8.0"; + version = "0.8.1"; src = fetchFromGitHub { owner = "Icinga"; repo = "icinga-php-library"; rev = "v${version}"; - sha256 = "sha256:05k0qcd5c5xb124dpp6lvfdh4dzf6bkd34v4sy7aj776p4hrlqx2"; + sha256 = "sha256:0ndd4gd26rglbz85izfvqc4ghcfa7wpq6ghrhggbzg819phndg5a"; }; installPhase = '' diff --git a/pkgs/servers/invidious/lsquic.nix b/pkgs/servers/invidious/lsquic.nix index 9c3bc68615c..ca04c97c128 100644 --- a/pkgs/servers/invidious/lsquic.nix +++ b/pkgs/servers/invidious/lsquic.nix @@ -1,11 +1,19 @@ -{ lib, boringssl, stdenv, fetchgit, fetchFromGitHub, cmake, zlib, perl, libevent, gcc10Stdenv, buildGoModule }: +{ lib, boringssl, stdenv, fetchgit, fetchFromGitHub, fetchurl, cmake, zlib, perl, libevent }: let versions = builtins.fromJSON (builtins.readFile ./versions.json); - buildGoModuleGcc10 = buildGoModule.override { stdenv = gcc10Stdenv; }; + fetchGitilesPatch = { name, url, sha256 }: + fetchurl { + url = "${url}%5E%21?format=TEXT"; + inherit name sha256; + downloadToTemp = true; + postFetch = '' + base64 -d < $downloadedFile > $out + ''; + }; # lsquic requires a specific boringssl version (noted in its README) - boringssl' = (boringssl.overrideAttrs (old: { + boringssl' = boringssl.overrideAttrs ({ preBuild, ... }: { version = versions.boringssl.rev; src = fetchgit { url = "https://boringssl.googlesource.com/boringssl"; @@ -15,10 +23,43 @@ let patches = [ # Use /etc/ssl/certs/ca-certificates.crt instead of /etc/ssl/cert.pem ./use-etc-ssl-certs.patch + + # because lsquic requires that specific boringssl version and that + # version does not yet include fixes for gcc11 build errors, they + # must be backported + (fetchGitilesPatch { + name = "fix-mismatch-between-header-and-implementation-of-bn_sqr_comba8.patch"; + url = "https://boringssl.googlesource.com/boringssl/+/139adff9b27eaf0bdaac664ec4c9a7db2fe3f920"; + sha256 = "05sp602dvh50v46jkzmh4sf4wqnq5bwy553596g2rhxg75bailjj"; + }) + (fetchGitilesPatch { + name = "use-an-unsized-helper-for-truncated-SHA-512-variants.patch"; + url = "https://boringssl.googlesource.com/boringssl/+/a24ab549e6ae246b391155d7bed3790ac0e07de2"; + sha256 = "0483jkpg4g64v23ln2blb74xnmzdjcn3r7w4zk7nfg8j3q5f9lxm"; + }) +/* + # the following patch is too complex, so we will modify the build flags + # of crypto/fipsmodule/CMakeFiles/fipsmodule.dir/bcm.c.o in preBuild + # and turn off -Werror=stringop-overflow + (fetchGitilesPatch { + name = "make-md32_common.h-single-included-and-use-an-unsized-helper-for-SHA-256.patch"; + url = "https://boringssl.googlesource.com/boringssl/+/597ffef971dd980b7de5e97a0c9b7ca26eec94bc"; + sha256 = "1y0bkkdf1ccd6crx326agp01q22clm4ai4p982y7r6dkmxmh52qr"; + }) +*/ + (fetchGitilesPatch { + name = "fix-array-parameter-warnings.patch"; + url = "https://boringssl.googlesource.com/boringssl/+/92c6fbfc4c44dc8462d260d836020d2b793e7804"; + sha256 = "0h4sl95i8b0dj0na4ngf50wg54raxyjxl1zzwdc810abglp10vnv"; + }) ]; - })).override { - buildGoModule = buildGoModuleGcc10; - }; + + preBuild = '' + ${preBuild} + sed -e '/^build crypto\/fipsmodule\/CMakeFiles\/fipsmodule\.dir\/bcm\.c\.o:/,/^ *FLAGS =/ s/^ *FLAGS = -Werror/& -Wno-error=stringop-overflow/' \ + -i build.ninja + ''; + }); in stdenv.mkDerivation rec { pname = "lsquic"; diff --git a/pkgs/servers/invidious/shards.nix b/pkgs/servers/invidious/shards.nix index 582a4083e7d..e5f297d902c 100644 --- a/pkgs/servers/invidious/shards.nix +++ b/pkgs/servers/invidious/shards.nix @@ -20,14 +20,14 @@ exception_page = { owner = "crystal-loot"; repo = "exception_page"; - rev = "v0.2.0"; - sha256 = "0nlgnh5iykbr1v2132342k2mz6s2laws6nkgqsqlwhhcr4gb4jcx"; + rev = "v0.2.2"; + sha256 = "1c8askb9b7621jjz5pjj6b8pdbhw3r1l3dym6swg1saspf5j3jwi"; }; kemal = { owner = "kemalcr"; repo = "kemal"; - rev = "v1.1.0"; - sha256 = "07vlvddy4mba9li2bvskzqzywwq55cyvlgkz13q6dsl4zfgc96ca"; + rev = "v1.1.2"; + sha256 = "1149q4qw0zrws5asqqr4snrdi67xsmisdcq58zcrbgqgsxgly9d0"; }; kilt = { owner = "jeromegn"; diff --git a/pkgs/servers/invidious/update.sh b/pkgs/servers/invidious/update.sh index 580d6136388..bf43fbb4b36 100755 --- a/pkgs/servers/invidious/update.sh +++ b/pkgs/servers/invidious/update.sh @@ -41,7 +41,7 @@ git -C "$git_dir" fetch origin "$git_branch" # because there might still be commits coming # use the day of the latest commit we picked as version new_rev=$(git -C "$git_dir" log -n 1 --format='format:%H' --before="${today}T00:00:00Z" "origin/$git_branch") -new_version="unstable-$(git -C "$git_dir" log -n 1 --format='format:%cs' "$new_rev")" +new_version="unstable-$(TZ=UTC git -C "$git_dir" log -n 1 --date='format-local:%Y-%m-%d' --format='%cd' "$new_rev")" info "latest commit before $today: $new_rev" if [ "$new_rev" = "$old_rev" ]; then diff --git a/pkgs/servers/invidious/versions.json b/pkgs/servers/invidious/versions.json index cec068a09bf..40f8bb04182 100644 --- a/pkgs/servers/invidious/versions.json +++ b/pkgs/servers/invidious/versions.json @@ -4,15 +4,15 @@ "sha256": "sha256-EU6T9yQCdOLx98Io8o01rEsgxDFF/Xoy42LgPopD2/A=" }, "invidious": { - "rev": "ed265cfdcd131b9df5398d899cc5d7036a5b7846", - "sha256": "0hhnq4s0slwbgxra7gxapl7dcz60a7k71cndi4crqcikmazzac3b", - "version": "unstable-2022-03-16" + "rev": "ca27e096f3249533cc7a9b123a8a8378f3312bb7", + "sha256": "0xjdzxnw6b5lk8pr82sjj60wfzxqkyamh0gpf2wxby52jvlbdcka", + "version": "unstable-2022-05-11" }, "lsquic": { "sha256": "sha256-hG8cUvhbCNeMOsKkaJlgGpzUrIx47E/WhmPIdI5F3qM=", "version": "2.18.1" }, "videojs": { - "sha256": "0b4vxd29kpvy60yhqm376r1872gds17s6wljqw0zlr16j762k50r" + "sha256": "0m09pc9acpzhfwwvc9dayl60nn28skmmglgvmlp48dlkqgfbgc27" } } diff --git a/pkgs/servers/isso/default.nix b/pkgs/servers/isso/default.nix index a7f48861487..46942669ac6 100644 --- a/pkgs/servers/isso/default.nix +++ b/pkgs/servers/isso/default.nix @@ -16,13 +16,13 @@ in with python3Packages; buildPythonApplication rec { pname = "isso"; - version = "0.12.6.1"; + version = "0.12.6.2"; src = fetchFromGitHub { owner = "posativ"; repo = pname; - rev = version; - sha256 = "sha256-b2iJmOOsaI4lqJ5//jmHflXRx4yFDaAoKZixXoWIyZg="; + rev = "refs/tags/${version}"; + sha256 = "sha256-T5T3EJS8ef8uo+P9qkC+7I70qv+4PFrnhImr04Fz57U="; }; propagatedBuildInputs = [ diff --git a/pkgs/servers/libreddit/default.nix b/pkgs/servers/libreddit/default.nix index 8274b744069..443905451dd 100644 --- a/pkgs/servers/libreddit/default.nix +++ b/pkgs/servers/libreddit/default.nix @@ -8,16 +8,16 @@ rustPlatform.buildRustPackage rec { pname = "libreddit"; - version = "0.22.6"; + version = "0.22.7"; src = fetchFromGitHub { owner = "spikecodes"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Dx0eVg1T9WTHeIQO9hwUoCAcUgQey8rlZ5+uxPIX0Wc="; + sha256 = "sha256-kM+XvkSxc+OsHq2hGPdpy32jQ/35AJo75PlpbeWjef0="; }; - cargoSha256 = "sha256-RGZgo9uxRmPpZzXu6AC2FPjOoZxLnh4gCjadAOTWJ4Q="; + cargoSha256 = "sha256-md56axw3tpl++wP3ga0iMX63ixu/35lhT4TA2Uo8GpI="; buildInputs = lib.optional stdenv.isDarwin Security; diff --git a/pkgs/servers/mail/mailman/default.nix b/pkgs/servers/mail/mailman/default.nix index f5632df7949..50742c0abc0 100644 --- a/pkgs/servers/mail/mailman/default.nix +++ b/pkgs/servers/mail/mailman/default.nix @@ -1,95 +1,33 @@ -{ lib, buildPythonPackage, fetchPypi, fetchpatch, pythonOlder, python3, postfix, lynx -}: +{ newScope, lib, python3 }: let - # Mailman does not support sqlalchemy >= 1.4 https://gitlab.com/mailman/mailman/-/issues/845 - pythonOverride = python3.override { - packageOverrides = self: super: { - alembic = super.alembic.overridePythonAttrs (oldAttrs: { - # does not find tests - doCheck = false; - }); - sqlalchemy = super.sqlalchemy.overridePythonAttrs (oldAttrs: rec { - version = "1.3.24"; - src = oldAttrs.src.override { - inherit version; - hash = "sha256-67t3fL+TEjWbiXv4G6ANrg9ctp+6KhgmXcwYpvXvdRk="; - }; - # does not find tests - doCheck = false; - }); - }; - }; -in + callPackage = newScope self; -buildPythonPackage rec { - pname = "mailman"; - version = "3.3.5"; - disabled = pythonOlder "3.6"; + self = lib.makeExtensible (self: { + python3 = callPackage ./python.nix { inherit python3; }; - src = fetchPypi { - inherit pname version; - sha256 = "12mgxs1ndhdjjkydx48b95na9k9h0disfqgrr6wxx7vda6dqvcwz"; - }; + hyperkitty = callPackage ./hyperkitty.nix { }; - propagatedBuildInputs = with pythonOverride.pkgs; [ - aiosmtpd - alembic - authheaders - click - dnspython - falcon - flufl_bounce - flufl_i18n - flufl_lock - gunicorn - importlib-resources - lazr_config - passlib - requests - sqlalchemy - zope_component - zope_configuration - ]; + mailman = callPackage ./package.nix { }; - patches = [ - (fetchpatch { - url = "https://gitlab.com/mailman/mailman/-/commit/4b206e2a5267a0e17f345fd7b2d957122ba57566.patch"; - sha256 = "06axmrn74p81wvcki36c7gfj5fp5q15zxz2yl3lrvijic7hbs4n2"; - }) - (fetchpatch { - url = "https://gitlab.com/mailman/mailman/-/commit/9613154f3c04fa2383fbf017031ef263c291418d.patch"; - sha256 = "0vyw87s857vfxbf7kihwb6w094xyxmxbi1bpdqi3ybjamjycp55r"; - }) - ./log-stderr.patch - ]; + mailman-hyperkitty = callPackage ./mailman-hyperkitty.nix { }; - postPatch = '' - substituteInPlace setup.py \ - --replace "alembic>=1.6.2,<1.7" "alembic>=1.6.2" + postorius = callPackage ./postorius.nix { }; - substituteInPlace src/mailman/config/postfix.cfg \ - --replace /usr/sbin/postmap ${postfix}/bin/postmap - substituteInPlace src/mailman/config/schema.cfg \ - --replace /usr/bin/lynx ${lynx}/bin/lynx - ''; + web = callPackage ./web.nix { }; - # Mailman assumes that those scripts in $out/bin are Python scripts. Wrapping - # them in shell code breaks this assumption. Use the wrapped version (see - # wrapped.nix) if you need the CLI (rather than the Python library). - # - # This gives a properly wrapped 'mailman' command plus an interpreter that - # has all the necessary search paths to execute unwrapped 'master' and - # 'runner' scripts. - dontWrapPythonPrograms = true; + buildEnvs = { web ? self.web + , mailman ? self.mailman + , mailman-hyperkitty ? self.mailman-hyperkitty + , withHyperkitty ? false + }: + { + mailmanEnv = self.python3.withPackages + (ps: [ mailman ps.psycopg2 ] + ++ lib.optional withHyperkitty mailman-hyperkitty); + webEnv = self.python3.withPackages + (ps: [ web ps.psycopg2 ]); + }; + }); - # requires flufl.testing, which the upstream has archived - doCheck = false; - - meta = { - homepage = "https://www.gnu.org/software/mailman/"; - description = "Free software for managing electronic mail discussion and newsletter lists"; - license = lib.licenses.gpl3Plus; - maintainers = with lib.maintainers; [ qyliss ]; - }; -} +in self diff --git a/pkgs/servers/mail/mailman/hyperkitty.nix b/pkgs/servers/mail/mailman/hyperkitty.nix index d1e4581789e..c10f2c1ba75 100644 --- a/pkgs/servers/mail/mailman/hyperkitty.nix +++ b/pkgs/servers/mail/mailman/hyperkitty.nix @@ -1,33 +1,10 @@ { lib -, buildPythonPackage -, fetchPypi -, pythonOlder - -# dependencies -, defusedxml -, django -, django-gravatar2 -, django-haystack -, django-mailman3 -, django-paintstore -, django-q -, django_compressor -, django-extensions -, djangorestframework -, flufl_lock -, mistune_2_0 -, networkx -, psycopg2 -, python-dateutil -, robot-detection - -# tests -, beautifulsoup4 -, elasticsearch -, mock -, whoosh +, python3 +, fetchpatch }: +with python3.pkgs; + buildPythonPackage rec { pname = "HyperKitty"; # Note: Mailman core must be on the latest version before upgrading HyperKitty. @@ -40,6 +17,15 @@ buildPythonPackage rec { sha256 = "sha256-gmkiK8pIHfubbbxNdm/D6L2o722FptxYgINYdIUOn4Y="; }; + patches = [ + # FIXME: backport Python 3.10 support fix, remove for next release + (fetchpatch { + url = "https://gitlab.com/mailman/hyperkitty/-/commit/551a44a76e46931fc5c1bcb341235d8f579820be.patch"; + sha256 = "sha256-5XCrvyrDEqH3JryPMoOXSlVVDLQ+PdYBqwGYxkExdvk="; + includes = [ "hyperkitty/*" ]; + }) + ]; + postPatch = '' # isort is a development dependency sed -i '/isort/d' setup.py diff --git a/pkgs/development/python-modules/mailman-hyperkitty/default.nix b/pkgs/servers/mail/mailman/mailman-hyperkitty.nix index 117ec4fb436..39f9b5ec37a 100644 --- a/pkgs/development/python-modules/mailman-hyperkitty/default.nix +++ b/pkgs/servers/mail/mailman/mailman-hyperkitty.nix @@ -1,15 +1,9 @@ { lib -, buildPythonPackage -, fetchPypi +, python3 , mailman -, mock -, nose2 -, python -, pythonOlder -, requests -, zope_interface }: +with python3.pkgs; buildPythonPackage rec { pname = "mailman-hyperkitty"; version = "1.2.0"; diff --git a/pkgs/servers/mail/mailman/package.nix b/pkgs/servers/mail/mailman/package.nix new file mode 100644 index 00000000000..a990f3cdb05 --- /dev/null +++ b/pkgs/servers/mail/mailman/package.nix @@ -0,0 +1,76 @@ +{ lib, fetchpatch, python3, postfix, lynx +}: + +with python3.pkgs; + +buildPythonPackage rec { + pname = "mailman"; + version = "3.3.5"; + disabled = pythonOlder "3.6"; + + src = fetchPypi { + inherit pname version; + sha256 = "12mgxs1ndhdjjkydx48b95na9k9h0disfqgrr6wxx7vda6dqvcwz"; + }; + + propagatedBuildInputs = with python3.pkgs; [ + aiosmtpd + alembic + authheaders + click + dnspython + falcon + flufl_bounce + flufl_i18n + flufl_lock + gunicorn + importlib-resources + lazr_config + passlib + requests + sqlalchemy + zope_component + zope_configuration + ]; + + patches = [ + (fetchpatch { + url = "https://gitlab.com/mailman/mailman/-/commit/4b206e2a5267a0e17f345fd7b2d957122ba57566.patch"; + sha256 = "06axmrn74p81wvcki36c7gfj5fp5q15zxz2yl3lrvijic7hbs4n2"; + }) + (fetchpatch { + url = "https://gitlab.com/mailman/mailman/-/commit/9613154f3c04fa2383fbf017031ef263c291418d.patch"; + sha256 = "0vyw87s857vfxbf7kihwb6w094xyxmxbi1bpdqi3ybjamjycp55r"; + }) + ./log-stderr.patch + ]; + + postPatch = '' + substituteInPlace setup.py \ + --replace "alembic>=1.6.2,<1.7" "alembic>=1.6.2" + + substituteInPlace src/mailman/config/postfix.cfg \ + --replace /usr/sbin/postmap ${postfix}/bin/postmap + substituteInPlace src/mailman/config/schema.cfg \ + --replace /usr/bin/lynx ${lynx}/bin/lynx + ''; + + # Mailman assumes that those scripts in $out/bin are Python scripts. Wrapping + # them in shell code breaks this assumption. Use the wrapped version (see + # wrapped.nix) if you need the CLI (rather than the Python library). + # + # This gives a properly wrapped 'mailman' command plus an interpreter that + # has all the necessary search paths to execute unwrapped 'master' and + # 'runner' scripts. + dontWrapPythonPrograms = true; + + # requires flufl.testing, which the upstream has archived + doCheck = false; + + meta = { + homepage = "https://www.gnu.org/software/mailman/"; + description = "Free software for managing electronic mail discussion and newsletter lists"; + license = lib.licenses.gpl3Plus; + maintainers = with lib.maintainers; [ qyliss ma27 ]; + }; +} diff --git a/pkgs/servers/mail/mailman/postorius.nix b/pkgs/servers/mail/mailman/postorius.nix index 4022b6fe91c..bd4425e5efa 100644 --- a/pkgs/servers/mail/mailman/postorius.nix +++ b/pkgs/servers/mail/mailman/postorius.nix @@ -1,6 +1,6 @@ -{ lib, buildPythonPackage, fetchPypi, beautifulsoup4, vcrpy, mock -, django-mailman3, mailmanclient, readme_renderer -}: +{ lib, python3 }: + +with python3.pkgs; buildPythonPackage rec { pname = "postorius"; diff --git a/pkgs/servers/mail/mailman/python.nix b/pkgs/servers/mail/mailman/python.nix new file mode 100644 index 00000000000..359f974f598 --- /dev/null +++ b/pkgs/servers/mail/mailman/python.nix @@ -0,0 +1,30 @@ +{ python3 }: + +python3.override { + packageOverrides = self: super: { + # does not find tests + alembic = super.alembic.overridePythonAttrs (oldAttrs: { + doCheck = false; + }); + # Needed by mailman, see https://gitlab.com/mailman/mailman/-/issues/964 + sqlalchemy = super.sqlalchemy.overridePythonAttrs (oldAttrs: rec { + version = "1.3.24"; + src = super.fetchPypi { + inherit version; + inherit (oldAttrs) pname; + sha256 = "06bmxzssc66cblk1hamskyv5q3xf1nh1py3vi6dka4lkpxy7gfzb"; + }; + # does not find tests + doCheck = false; + }); + # Fixes `AssertionError: database connection isn't set to UTC` + psycopg2 = super.psycopg2.overridePythonAttrs (a: (rec { + version = "2.8.6"; + src = super.fetchPypi { + inherit version; + inherit (a) pname; + sha256 = "fb23f6c71107c37fd667cb4ea363ddeb936b348bbd6449278eb92c189699f543"; + }; + })); + }; +} diff --git a/pkgs/servers/mail/mailman/web.nix b/pkgs/servers/mail/mailman/web.nix index adad9d21943..64489bc3e41 100644 --- a/pkgs/servers/mail/mailman/web.nix +++ b/pkgs/servers/mail/mailman/web.nix @@ -1,7 +1,9 @@ -{ buildPythonPackage, lib, fetchPypi, pythonOlder -, sassc, hyperkitty, postorius, whoosh, setuptools-scm +{ lib, python3 +, sassc, hyperkitty, postorius }: +with python3.pkgs; + buildPythonPackage rec { pname = "mailman-web"; version = "0.0.5"; diff --git a/pkgs/servers/mail/mailman/wrapped.nix b/pkgs/servers/mail/mailman/wrapped.nix deleted file mode 100644 index c244af10e78..00000000000 --- a/pkgs/servers/mail/mailman/wrapped.nix +++ /dev/null @@ -1,20 +0,0 @@ -{ runCommand, lib, makeWrapper, python3 -, archivers ? [ python3.pkgs.mailman-hyperkitty ] -}: - -let - inherit (python3.pkgs) makePythonPath mailman; -in - -runCommand "${mailman.name}-wrapped" { - inherit (mailman) meta; - nativeBuildInputs = [ makeWrapper ]; - passthru = mailman.passthru // { unwrapped = mailman; }; -} '' - mkdir -p "$out/bin" - cd "${mailman}/bin" - for exe in *; do - makeWrapper "${mailman}/bin/$exe" "$out/bin/$exe" \ - --set PYTHONPATH ${makePythonPath ([ mailman ] ++ archivers)} - done -'' diff --git a/pkgs/servers/matrix-synapse/default.nix b/pkgs/servers/matrix-synapse/default.nix index c81800a3561..ce2009c4ed7 100644 --- a/pkgs/servers/matrix-synapse/default.nix +++ b/pkgs/servers/matrix-synapse/default.nix @@ -11,11 +11,11 @@ in with python3.pkgs; buildPythonApplication rec { pname = "matrix-synapse"; - version = "1.58.0"; + version = "1.59.1"; src = fetchPypi { inherit pname version; - sha256 = "sha256-cY3rtmaaAimEQPU4wcMEy/QysPNCdk7yptrkctnLfDA="; + sha256 = "sha256-EASd+tlPIYQpQP2OOHJSPDzgJZyVoigVfcC2b2c2A2o="; }; buildInputs = [ openssl ]; diff --git a/pkgs/servers/matrix-synapse/plugins/mjolnir-antispam.nix b/pkgs/servers/matrix-synapse/plugins/mjolnir-antispam.nix index 505e9e4ebae..c9aa674cbdc 100644 --- a/pkgs/servers/matrix-synapse/plugins/mjolnir-antispam.nix +++ b/pkgs/servers/matrix-synapse/plugins/mjolnir-antispam.nix @@ -2,13 +2,13 @@ buildPythonPackage rec { pname = "matrix-synapse-mjolnir-antispam"; - version = "1.4.1"; + version = "1.4.2"; src = fetchFromGitHub { owner = "matrix-org"; repo = "mjolnir"; - rev = "v${version}"; - sha256 = "sha256-zVb0lD5tYhX2a2MzNVQ8u7rMuQ8yGC/JlodbY4nsqNU="; + rev = "refs/tags/v${version}"; + sha256 = "sha256-887azmXT5PGpcOqtWtKwdoyEtsXGm5DzpNRgEMlgSfM="; }; sourceRoot = "./source/synapse_antispam"; diff --git a/pkgs/servers/matterbridge/default.nix b/pkgs/servers/matterbridge/default.nix index 8882853a3b4..1f8ab972b05 100644 --- a/pkgs/servers/matterbridge/default.nix +++ b/pkgs/servers/matterbridge/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "matterbridge"; - version = "1.25.0"; + version = "1.25.1"; src = fetchFromGitHub { owner = "42wim"; repo = pname; rev = "v${version}"; - sha256 = "sha256-R5eoFpCbfPPkWgK1NFgRvWzUR5uTV4YpdEBE09g9D3A="; + sha256 = "sha256-mJEOYtQe+CHh73ev7+cdghxZHPTEGxvKgJbVoefK4Q0="; }; vendorSha256 = null; diff --git a/pkgs/servers/mautrix-whatsapp/default.nix b/pkgs/servers/mautrix-whatsapp/default.nix index b20bd236c85..35006f79782 100644 --- a/pkgs/servers/mautrix-whatsapp/default.nix +++ b/pkgs/servers/mautrix-whatsapp/default.nix @@ -2,18 +2,18 @@ buildGoModule rec { pname = "mautrix-whatsapp"; - version = "0.3.1"; + version = "0.4.0"; src = fetchFromGitHub { owner = "mautrix"; repo = "whatsapp"; rev = "v${version}"; - sha256 = "adsGPVG/EwpzOqhFJvn3anjTXwGY27a7Bc4NNkBeqJk="; + sha256 = "2F0smK2L9Xj3/65j7vwwGT1OLxcTqkImpn16wB5rWDw="; }; buildInputs = [ olm ]; - vendorSha256 = "WT8oDtmUFrqfNK/RnEv8+jpGuQEGt+ppjtmcfUGYZv0="; + vendorSha256 = "Xv+3dJLOHnOjTp5vDbejmkO/NoDQlWxl0KaMx1C3ch0="; doCheck = false; @@ -21,6 +21,6 @@ buildGoModule rec { homepage = "https://github.com/tulir/mautrix-whatsapp"; description = "Matrix <-> Whatsapp hybrid puppeting/relaybot bridge"; license = licenses.agpl3Plus; - maintainers = with maintainers; [ vskilet ma27 ]; + maintainers = with maintainers; [ vskilet ma27 chvp ]; }; } diff --git a/pkgs/servers/minio/default.nix b/pkgs/servers/minio/default.nix index afa537bddd4..3349f0cf3a0 100644 --- a/pkgs/servers/minio/default.nix +++ b/pkgs/servers/minio/default.nix @@ -15,16 +15,16 @@ let in buildGoModule rec { pname = "minio"; - version = "2022-03-22T02-05-10Z"; + version = "2022-05-08T23-50-31Z"; src = fetchFromGitHub { owner = "minio"; repo = "minio"; rev = "RELEASE.${version}"; - sha256 = "sha256-N0ua+XHkLr33PElSdOzVQF3POPU+lx4/M6LJzxtkisI="; + sha256 = "sha256-Ssuqk/ax6MWdXtbJqWeTTtsIiTK4FmYSR5rOqxh+IaU="; }; - vendorSha256 = "sha256-Ql3J2r489Hzhy6E9uZwQXJIw/njb5oafCYjOyWGzbXs="; + vendorSha256 = "sha256-JoI3B3rDzlY0lDHF3rjrzv8/Rq+XCFRs35bWVZqfAKA="; doCheck = false; diff --git a/pkgs/servers/misc/virtiofsd/default.nix b/pkgs/servers/misc/virtiofsd/default.nix index d8ae7ca61d9..0c60281b0d7 100644 --- a/pkgs/servers/misc/virtiofsd/default.nix +++ b/pkgs/servers/misc/virtiofsd/default.nix @@ -1,17 +1,21 @@ -{ lib, rustPlatform, fetchFromGitLab, libcap_ng, libseccomp }: +{ lib, stdenv, rustPlatform, fetchFromGitLab, libcap_ng, libseccomp }: rustPlatform.buildRustPackage rec { pname = "virtiofsd"; - version = "1.1.0"; + version = "1.2.0"; src = fetchFromGitLab { owner = "virtio-fs"; repo = "virtiofsd"; rev = "v${version}"; - sha256 = "sha256-WB0zu2M/5enBOoOUUSXnNAkbsA+JzDgtoLncE1YcDLs="; + sha256 = "161z88nx2x2j4q8fbxryv7v63f9aw7wpvl6vg6x4xzllnrw6p607"; }; - cargoSha256 = "sha256-uRPmZE/xc0yeurBZ4rnrZua5d4lbPwStMUacFgbquuk="; + cargoSha256 = "0ma3kaaa4bl11015gxijwzyxhixz947k8byaypmmw0dj9m1vhv77"; + + LIBCAPNG_LIB_PATH = "${lib.getLib libcap_ng}/lib"; + LIBCAPNG_LINK_TYPE = + if stdenv.hostPlatform.isStatic then "static" else "dylib"; buildInputs = [ libcap_ng libseccomp ]; diff --git a/pkgs/servers/monitoring/grafana/default.nix b/pkgs/servers/monitoring/grafana/default.nix index 652f203460b..9e2769d51ca 100644 --- a/pkgs/servers/monitoring/grafana/default.nix +++ b/pkgs/servers/monitoring/grafana/default.nix @@ -2,7 +2,7 @@ buildGoModule rec { pname = "grafana"; - version = "8.5.1"; + version = "8.5.3"; excludedPackages = [ "alert_webhook_listener" "clean-swagger" "release_publisher" "slow_proxy" "slow_proxy_mac" "macaron" ]; @@ -10,12 +10,12 @@ buildGoModule rec { rev = "v${version}"; owner = "grafana"; repo = "grafana"; - sha256 = "sha256-GwvJA+lcbUuVbzniDW6gYbxQO5uXSP6rjzgmcJ5YYxk="; + sha256 = "sha256-O0R+FsZC//Kj9FBb7Xg2fKxn60h/4ATJiropltGM9EI"; }; srcStatic = fetchurl { url = "https://dl.grafana.com/oss/release/grafana-${version}.linux-amd64.tar.gz"; - sha256 = "030zl5k8b4hcay06a2lvlmq8swbix88ii4gz9yd4kywcjy5vhnyf"; + sha256 = "0812lvcdibviy23y61z9ljy1j5d55ziyvf1y69kxmds2hwsj7iwl"; }; vendorSha256 = "sha256-ZL+A6Sz0uHg7ZzYHmA4EU5ZxfRXBLyKglk135iQT600="; diff --git a/pkgs/servers/monitoring/icinga2/default.nix b/pkgs/servers/monitoring/icinga2/default.nix index a674aca2a37..643e505d794 100644 --- a/pkgs/servers/monitoring/icinga2/default.nix +++ b/pkgs/servers/monitoring/icinga2/default.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation rec { pname = "icinga2${nameSuffix}"; - version = "2.13.2"; + version = "2.13.3"; src = fetchFromGitHub { owner = "icinga"; repo = "icinga2"; rev = "v${version}"; - sha256 = "sha256:1ijvav2ymgq1i8jycrqbp2y4r54y0dkwjnwxc20bmcixxh877zdn"; + sha256 = "sha256:1z8wzhlhl8vb7m8axvayfyqgf86lz67gaa02n3r17049vwswdgmb"; }; patches = [ diff --git a/pkgs/servers/monitoring/lcdproc/default.nix b/pkgs/servers/monitoring/lcdproc/default.nix index bd0a7dc0dfb..949be34b80b 100644 --- a/pkgs/servers/monitoring/lcdproc/default.nix +++ b/pkgs/servers/monitoring/lcdproc/default.nix @@ -1,6 +1,7 @@ { lib , stdenv , fetchFromGitHub +, fetchpatch , autoreconfHook , makeWrapper , pkg-config @@ -27,6 +28,14 @@ stdenv.mkDerivation rec { patches = [ ./hardcode_mtab.patch + + # Pull upstream fix for -fno-common toolchains: + # https://github.com/lcdproc/lcdproc/pull/148 + (fetchpatch { + name = "fno-common.patch"; + url = "https://github.com/lcdproc/lcdproc/commit/fda5302878692da933dc03cd011f8ddffefa07a4.patch"; + sha256 = "0ld6p1r4rjsnjr63afw3lp5lx25jxjs07lsp9yc3q96r91r835cy"; + }) ]; # we don't need to see the GPL every time we launch lcdd in the foreground diff --git a/pkgs/servers/monitoring/prometheus/consul-exporter.nix b/pkgs/servers/monitoring/prometheus/consul-exporter.nix index c3cc7eff90a..b9475c97c1a 100644 --- a/pkgs/servers/monitoring/prometheus/consul-exporter.nix +++ b/pkgs/servers/monitoring/prometheus/consul-exporter.nix @@ -1,18 +1,20 @@ -{ lib, buildGoPackage, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub }: -buildGoPackage rec { +buildGoModule rec { pname = "consul_exporter"; - version = "0.7.1"; - - goPackagePath = "github.com/prometheus/consul_exporter"; + version = "0.8.0"; src = fetchFromGitHub { owner = "prometheus"; repo = "consul_exporter"; rev = "v${version}"; - sha256 = "16ibafcbpiplsh1awcvblzzf2cbr4baf8wiwpdpibgmcwwf9m5ya"; + sha256 = "sha256-5odAKMWK2tDZ3a+bIVIdPgzxrW64hF8nNqItGO7sODI="; }; + vendorSha256 = "sha256-vbaiHeQRo9hsHa/10f4202xLe9mduELRJMCDFuyKlW0="; + + ldflags = [ "-s" "-w" ]; + meta = with lib; { description = "Prometheus exporter for Consul metrics"; homepage = "https://github.com/prometheus/consul_exporter"; diff --git a/pkgs/servers/monitoring/prometheus/default.nix b/pkgs/servers/monitoring/prometheus/default.nix index 62cb43abefa..4b79103d7d5 100644 --- a/pkgs/servers/monitoring/prometheus/default.nix +++ b/pkgs/servers/monitoring/prometheus/default.nix @@ -55,6 +55,7 @@ buildGoModule rec { # Enable only select service discovery to shrink binaries. ( + true # prevent bash syntax error when all plugins are disabled ${lib.optionalString (enableAWS) "echo - github.com/prometheus/prometheus/discovery/aws"} ${lib.optionalString (enableAzure) diff --git a/pkgs/servers/monitoring/prometheus/mysqld-exporter.nix b/pkgs/servers/monitoring/prometheus/mysqld-exporter.nix index 894fbd1ab3f..2e1f44754d1 100644 --- a/pkgs/servers/monitoring/prometheus/mysqld-exporter.nix +++ b/pkgs/servers/monitoring/prometheus/mysqld-exporter.nix @@ -2,17 +2,17 @@ buildGoModule rec { pname = "mysqld_exporter"; - version = "0.13.0"; + version = "0.14.0"; rev = "v${version}"; src = fetchFromGitHub { inherit rev; owner = "prometheus"; repo = "mysqld_exporter"; - sha256 = "05gb6p65a0ys356qnanwc40klz1izrib37rz5yzyg2ysvamlvmys"; + sha256 = "sha256-SMcpQNygv/jVLNuQP8V6BH/CmSt5Y4dzYPsboTH2dos="; }; - vendorSha256 = "19785rfzlx8h0h8vmg0ghd40h3p4y6ikhgf8rd2qfj5f6qxfhrgv"; + vendorSha256 = "sha256-M6u+ZBEUqCd6cKVHPvHqRiXLbuWz66GK+ybIQm+5tQE="; ldflags = let t = "github.com/prometheus/common/version"; in [ "-s" "-w" diff --git a/pkgs/servers/monitoring/prometheus/nginx-exporter.nix b/pkgs/servers/monitoring/prometheus/nginx-exporter.nix index 8b39915193e..ac8ebb8d29b 100644 --- a/pkgs/servers/monitoring/prometheus/nginx-exporter.nix +++ b/pkgs/servers/monitoring/prometheus/nginx-exporter.nix @@ -1,23 +1,19 @@ -{ lib, buildGoPackage, fetchFromGitHub, nixosTests }: +{ lib, buildGoModule, fetchFromGitHub, nixosTests }: -buildGoPackage rec { +buildGoModule rec { pname = "nginx_exporter"; - version = "0.9.0"; - - goPackagePath = "github.com/nginxinc/nginx-prometheus-exporter"; - - ldflags = [ - "-X main.version=${version}" - ]; + version = "0.10.0"; src = fetchFromGitHub { - rev = "v${version}"; owner = "nginxinc"; repo = "nginx-prometheus-exporter"; - sha256 = "04y5vpj2kv2ygdzxy3crpnx4mhpkm1ns2995kxgvjlhnyck7a5rf"; + rev = "v${version}"; + sha256 = "sha256-k9sbMIn5N3EJ7ZlfmD9pRV6lfywnKyFvpxC/pGGgNTA="; }; - doCheck = true; + vendorSha256 = "sha256-SaaHbn97cb/d8symyrBYLzK+5ukVLfGrFiRIz+tKPhw="; + + ldflags = [ "-s" "-w" "-X main.version=${version}" ]; passthru.tests = { inherit (nixosTests.prometheus-exporters) nginx; }; diff --git a/pkgs/servers/monitoring/prometheus/openldap-exporter.nix b/pkgs/servers/monitoring/prometheus/openldap-exporter.nix index c04a3df2e90..20447d1c315 100644 --- a/pkgs/servers/monitoring/prometheus/openldap-exporter.nix +++ b/pkgs/servers/monitoring/prometheus/openldap-exporter.nix @@ -1,27 +1,29 @@ -{ buildGoPackage, lib, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub }: -buildGoPackage rec { +buildGoModule rec { pname = "openldap_exporter"; - version = "2.2.0"; + version = "2.2.1"; src = fetchFromGitHub { owner = "tomcz"; repo = pname; rev = "v${version}"; - sha256 = "sha256-+lrLA9CbGNzvvbwn79ili/kFRCr6vMKDtkvyfnL9n9k="; + sha256 = "sha256-ok2fTYz1oQiNdTPsssPb/VuFqny1i8nKTngSpKgCpC4="; }; + vendorSha256 = null; + ldflags = [ - "-s" "-w" + "-s" + "-w" "-X github.com/tomcz/openldap_exporter.tag=v${version}" "-X github.com/tomcz/openldap_exporter.commit=unknown" ]; - goPackagePath = "github.com/tomcz/openldap_exporter"; meta = with lib; { homepage = "https://github.com/tomcz/openldap_exporter"; - description = " Simple service that scrapes metrics from OpenLDAP and exports them via HTTP for Prometheus consumption"; + description = "Simple service that scrapes metrics from OpenLDAP and exports them via HTTP for Prometheus consumption"; license = licenses.mit; maintainers = with maintainers; [ ma27 ]; }; diff --git a/pkgs/servers/mpd/default.nix b/pkgs/servers/mpd/default.nix index c83d6e3e1fb..be85d5b0c91 100644 --- a/pkgs/servers/mpd/default.nix +++ b/pkgs/servers/mpd/default.nix @@ -96,7 +96,7 @@ let # Disable platform specific features if needed # using libmad to decode mp3 files on darwin is causing a segfault -- there # is probably a solution, but I'm disabling it for now - platformMask = lib.optionals stdenv.isDarwin [ "mad" "pulse" "jack" "nfs" "smbclient" ] + platformMask = lib.optionals stdenv.isDarwin [ "mad" "pulse" "jack" "smbclient" ] ++ lib.optionals (!stdenv.isLinux) [ "alsa" "pipewire" "io_uring" "systemd" "syslog" ]; knownFeatures = builtins.attrNames featureDependencies ++ builtins.attrNames nativeFeatureDependencies; @@ -193,7 +193,7 @@ in { mpd = run { }; mpd-small = run { features = [ - "webdav" "curl" "mms" "bzip2" "zzip" + "webdav" "curl" "mms" "bzip2" "zzip" "nfs" "audiofile" "faad" "flac" "gme" "mpg123" "opus" "vorbis" "vorbisenc" "lame" "libsamplerate" "shout" @@ -203,7 +203,7 @@ in ] ++ lib.optionals stdenv.isLinux [ "alsa" "systemd" "syslog" "io_uring" ] ++ lib.optionals (!stdenv.isDarwin) [ - "mad" "jack" "nfs" + "mad" "jack" ]; }; mpdWithFeatures = run; } diff --git a/pkgs/servers/nextcloud/default.nix b/pkgs/servers/nextcloud/default.nix index e71fb9db115..94d69ad81dc 100644 --- a/pkgs/servers/nextcloud/default.nix +++ b/pkgs/servers/nextcloud/default.nix @@ -33,27 +33,28 @@ let }; }; in { - nextcloud21 = throw '' - Nextcloud v21 has been removed from `nixpkgs` as the support for it was dropped - by upstream in 2022-02. Please upgrade to at least Nextcloud v22 by declaring + nextcloud22 = throw '' + Nextcloud v22 has been removed from `nixpkgs` as the support for is dropped + by upstream in 2022-07. Please upgrade to at least Nextcloud v23 by declaring - services.nextcloud.package = pkgs.nextcloud22; + services.nextcloud.package = pkgs.nextcloud23; in your NixOS config. - WARNING: if you were on Nextcloud 20 on NixOS 21.11 you have to upgrade to Nextcloud 21 + WARNING: if you were on Nextcloud 21 on NixOS 21.11 you have to upgrade to Nextcloud 22 first on 21.11 because Nextcloud doesn't support upgrades accross multiple major versions! ''; - nextcloud22 = generic { - version = "22.2.7"; - sha256 = "5ada41cb3e69665e8a13946f71978829c0a0163d0277a49e599c9e8ccf960eab"; + nextcloud23 = generic { + version = "23.0.5"; + sha256 = "3cf51a795f8439e5d34f0a521d939cefafbae38450cce64c6673016984195f29"; }; - nextcloud23 = generic { - version = "23.0.4"; - sha256 = "67191c2b8b41591ae42accfb32216313fde0e107201682cb39029f890712bc6a"; + nextcloud24 = generic { + version = "24.0.1"; + sha256 = "d32a8f6c4722a45cb67de7018163cfafcfa22a871fbac0f623c3875fa4304e5a"; }; + # tip: get she sha with: # curl 'https://download.nextcloud.com/server/releases/nextcloud-${version}.tar.bz2.sha256' } diff --git a/pkgs/servers/nitter/default.nix b/pkgs/servers/nitter/default.nix index a0115440b6e..3931f5b3281 100644 --- a/pkgs/servers/nitter/default.nix +++ b/pkgs/servers/nitter/default.nix @@ -2,14 +2,14 @@ nimPackages.buildNimPackage rec { pname = "nitter"; - version = "unstable-2022-03-21"; + version = "unstable-2022-05-13"; nimBinOnly = true; src = fetchFromGitHub { owner = "zedeus"; repo = "nitter"; - rev = "6884f05041a9b8619ec709afacdfdd6482a120a0"; - sha256 = "1mnc6jqljpqp9lgcrxxvf3aiswssr34v139cxfbwlmj45swmsazh"; + rev = "683c052036b268028f0ecae020a1519bc586516d"; + sha256 = "179z66jlwbdarrgvpdh8aqy2ihkiakd22wqydrfgpsgr59ma8fgl"; }; buildInputs = with nimPackages; [ @@ -29,6 +29,7 @@ nimPackages.buildNimPackage rec { postBuild = '' nim c --hint[Processing]:off -r tools/gencss + nim c --hint[Processing]:off -r tools/rendermd ''; postInstall = '' diff --git a/pkgs/servers/nosql/victoriametrics/default.nix b/pkgs/servers/nosql/victoriametrics/default.nix index 8e676b5022a..0fe4dc28d27 100644 --- a/pkgs/servers/nosql/victoriametrics/default.nix +++ b/pkgs/servers/nosql/victoriametrics/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "VictoriaMetrics"; - version = "1.77.0"; + version = "1.77.2"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "sha256-Ike3yO93q/bna/cnHv1sg+gR7iS9cVmNzLViBsfFdVs="; + sha256 = "sha256-S0HXIjZI48A+tMv+gT8UfYqmCI4NOwWAFykfhW73WPc="; }; vendorSha256 = null; @@ -17,8 +17,13 @@ buildGoModule rec { # main module (github.com/VictoriaMetrics/VictoriaMetrics) does not contain package # github.com/VictoriaMetrics/VictoriaMetrics/app/vmui/packages/vmui/web # - # This appears to be some of test server for development purposes only. + # This appears to be some kind of test server for development purposes only. rm -f app/vmui/packages/vmui/web/{go.mod,main.go} + + # Increase timeouts in tests to prevent failure on heavily loaded builders + substituteInPlace lib/storage/storage_test.go \ + --replace "time.After(10 " "time.After(120 " \ + --replace "time.After(30 " "time.After(120 " ''; ldflags = [ "-s" "-w" "-X github.com/VictoriaMetrics/VictoriaMetrics/lib/buildinfo.Version=${version}" ]; diff --git a/pkgs/servers/plex/raw.nix b/pkgs/servers/plex/raw.nix index dc65911a066..6d7466afd86 100644 --- a/pkgs/servers/plex/raw.nix +++ b/pkgs/servers/plex/raw.nix @@ -12,16 +12,16 @@ # server, and the FHS userenv and corresponding NixOS module should # automatically pick up the changes. stdenv.mkDerivation rec { - version = "1.26.0.5715-8cf78dab3"; + version = "1.26.1.5798-99a4a6ac9"; pname = "plexmediaserver"; # Fetch the source src = if stdenv.hostPlatform.system == "aarch64-linux" then fetchurl { url = "https://downloads.plex.tv/plex-media-server-new/${version}/debian/plexmediaserver_${version}_arm64.deb"; - hash = "sha256-Ou5DlQPk+zAt/wE5Nry4nzLaR1Id6tQdwl73qawig4M="; + hash = "sha256-Y2LW7NNdwD4t/R7dHOAEG2mxC4qFV6Z8VUh0APo8QNM="; } else fetchurl { url = "https://downloads.plex.tv/plex-media-server-new/${version}/debian/plexmediaserver_${version}_amd64.deb"; - hash = "sha256-DQbRobiJwT7Xr4NzKS2iQOszOsd/bS/+kJ4p+QUVXfg="; + hash = "sha256-Chu4IULIvkmfMEV0LSg50i6usZJZI3UWOgCHQakbhaY="; }; outputs = [ "out" "basedb" ]; diff --git a/pkgs/servers/radicale/3.x.nix b/pkgs/servers/radicale/3.x.nix index 7171b4550fd..a8f5a29db8d 100644 --- a/pkgs/servers/radicale/3.x.nix +++ b/pkgs/servers/radicale/3.x.nix @@ -20,6 +20,7 @@ python3.pkgs.buildPythonApplication rec { passlib vobject python-dateutil + pytz # https://github.com/Kozea/Radicale/issues/816 ] ++ passlib.extras-require.bcrypt; checkInputs = with python3.pkgs; [ diff --git a/pkgs/servers/redpanda/default.nix b/pkgs/servers/redpanda/default.nix index 6b0704b04a5..c2060560c59 100644 --- a/pkgs/servers/redpanda/default.nix +++ b/pkgs/servers/redpanda/default.nix @@ -4,13 +4,19 @@ let version = "21.11.15"; platform = if stdenv.isLinux then "linux" else "darwin"; arch = if stdenv.isAarch64 then "arm" else "amd"; + sha256s = { + darwin.amd = "sha256-Yf4O7lVcf+nmb0wFTx7jLjUSmdAItoUfPlkhHveI9UY="; + darwin.arm = "sha256-vKfFBheDZtvcbg0zbj3rqUEQczZvySuGuM3RopnDJG8="; + linux.amd = "sha256:0vpxn7kcpqylk0nc74m6yxgwwf8ns8pyb6kxnmnmv2x58f8x4c8n"; + linux.arm = "sha256-1AQSB2V5zGivU0UinTST2kOydQf/bmLbpjdW0Yo4ptE="; + }; in stdenv.mkDerivation rec { pname = "redpanda"; inherit version; src = fetchzip { url = "https://github.com/redpanda-data/redpanda/releases/download/v${version}/rpk-${platform}-${arch}64.zip"; - sha256 = "sha256-Yf4O7lVcf+nmb0wFTx7jLjUSmdAItoUfPlkhHveI9UY="; + sha256 = sha256s.${platform}.${arch}; }; installPhase = '' diff --git a/pkgs/servers/sonarr/default.nix b/pkgs/servers/sonarr/default.nix index fcab3a8e560..b944154631e 100644 --- a/pkgs/servers/sonarr/default.nix +++ b/pkgs/servers/sonarr/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "sonarr"; - version = "3.0.7.1477"; + version = "3.0.8.1507"; src = fetchurl { url = "https://download.sonarr.tv/v3/main/${version}/Sonarr.main.${version}.linux.tar.gz"; - sha256 = "sha256-xB7kWWxx+ymBxyxBzwY7gZfw9kMHi2MSsrUp8GIOiws="; + sha256 = "sha256-O2UvU1juO54gb9LVnEuIXhT0Ux2rEIq2WdmsoWVDh1w="; }; nativeBuildInputs = [ makeWrapper ]; @@ -25,7 +25,7 @@ stdenv.mkDerivation rec { ''; passthru = { - updateScript = "./update.sh"; + updateScript = ./update.sh; tests.smoke-test = nixosTests.sonarr; }; diff --git a/pkgs/servers/sql/postgresql/ext/pipelinedb.nix b/pkgs/servers/sql/postgresql/ext/pipelinedb.nix index 06c36a4ff6c..6403138fd70 100644 --- a/pkgs/servers/sql/postgresql/ext/pipelinedb.nix +++ b/pkgs/servers/sql/postgresql/ext/pipelinedb.nix @@ -34,6 +34,6 @@ stdenv.mkDerivation rec { license = licenses.asl20; platforms = postgresql.meta.platforms; maintainers = [ maintainers.marsam ]; - broken = versionOlder postgresql.version "10"; + broken = versions.major postgresql.version != "11"; }; } diff --git a/pkgs/servers/sql/postgresql/ext/plpgsql_check.nix b/pkgs/servers/sql/postgresql/ext/plpgsql_check.nix index dae53882238..17e2294598e 100644 --- a/pkgs/servers/sql/postgresql/ext/plpgsql_check.nix +++ b/pkgs/servers/sql/postgresql/ext/plpgsql_check.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "plpgsql_check"; - version = "2.1.3"; + version = "2.1.5"; src = fetchFromGitHub { owner = "okbob"; repo = pname; rev = "v${version}"; - sha256 = "sha256-hVbx1eUrVQ35UzcokoqYCi6RFI5Dn7t9XH8q9VbyDbQ="; + sha256 = "sha256-DYdZuHraecQZ33xHX6ugiUJVfFVAayD2spIQt2Qqa5U="; }; buildInputs = [ postgresql ]; diff --git a/pkgs/servers/tegola/default.nix b/pkgs/servers/tegola/default.nix index 0037713e597..14c1b36581c 100644 --- a/pkgs/servers/tegola/default.nix +++ b/pkgs/servers/tegola/default.nix @@ -1,21 +1,21 @@ -{ lib, buildGoPackage, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub }: -buildGoPackage rec { +buildGoModule rec { pname = "tegola"; - version = "0.14.0"; - - goPackagePath = "github.com/go-spatial/tegola"; + version = "0.15.0"; src = fetchFromGitHub { owner = "go-spatial"; repo = pname; rev = "v${version}"; - sha256 = "sha256-/1UhgcMLCB1/HtDX6HvVXybn3jOCRLuz2AF+M52Aye0="; + sha256 = "sha256-RSuTZHv3W2SVPAkydz5yB89Ioynp0DO0qaQKut5tokc="; }; - ldflags = [ "-s" "-w" "-X ${goPackagePath}/cmd/tegola/cmd.Version=${version}" ]; + vendorSha256 = null; + + subPackages = [ "cmd/tegola" ]; - excludedPackages = [ "example" ]; + ldflags = [ "-s" "-w" "-X github.com/go-spatial/tegola/internal/build.Version=${version}" ]; meta = with lib; { homepage = "https://www.tegola.io/"; diff --git a/pkgs/servers/timetagger/default.nix b/pkgs/servers/timetagger/default.nix index 5e4629f455b..2b060ed5174 100644 --- a/pkgs/servers/timetagger/default.nix +++ b/pkgs/servers/timetagger/default.nix @@ -1,6 +1,5 @@ { lib -, pkgs -, python3Packages +, python3 , fetchFromGitHub , addr ? "127.0.0.1" @@ -13,24 +12,18 @@ # timetagger. # -let - tt = python3Packages.timetagger; -in -python3Packages.buildPythonPackage rec { - pname = tt.name; - version = tt.version; - src = tt.src; - meta = tt.meta; +python3.pkgs.buildPythonApplication { + inherit (python3.pkgs.timetagger) pname version src meta; - propagatedBuildInputs = [ tt ] - ++ (with python3Packages; [ - setuptools - ]); + propagatedBuildInputs = with python3.pkgs; [ + setuptools + timetagger + ]; format = "custom"; installPhase = '' mkdir -p $out/bin - echo "#!${pkgs.python3}/bin/python3" >> $out/bin/timetagger + echo "#!${python3.interpreter}" >> $out/bin/timetagger cat run.py >> $out/bin/timetagger sed -Ei 's,0\.0\.0\.0:80,${addr}:${toString port},' $out/bin/timetagger chmod +x $out/bin/timetagger diff --git a/pkgs/servers/unifi/default.nix b/pkgs/servers/unifi/default.nix index 6c0a505d523..24c922018f1 100644 --- a/pkgs/servers/unifi/default.nix +++ b/pkgs/servers/unifi/default.nix @@ -65,7 +65,7 @@ in rec { }; unifi7 = generic { - version = "7.1.61"; - sha256 = "sha256-7Ac8BjlBLCslSU6IZK0EtheKz4CtH7tcmR8J2rUGYbs="; + version = "7.1.65"; + sha256 = "sha256-ilC4L59rui8WBKkWrzTFuEePo6L3wLC27Z5/Ef0MX7k="; }; } diff --git a/pkgs/servers/web-apps/netbox/default.nix b/pkgs/servers/web-apps/netbox/default.nix index 988076947bc..ee868397ee7 100644 --- a/pkgs/servers/web-apps/netbox/default.nix +++ b/pkgs/servers/web-apps/netbox/default.nix @@ -9,36 +9,7 @@ let py = python3.override { packageOverrides = self: super: { - django = super.django_3; - jsonschema = super.jsonschema.overridePythonAttrs (old: rec { - version = "3.2.0"; - src = self.fetchPypi { - pname = old.pname; - inherit version; - sha256 = "c8a85b28d377cc7737e46e2d9f2b4f44ee3c0e1deac6bf46ddefc7187d30797a"; - }; - }); - lxml = super.lxml.overridePythonAttrs (old: rec { - version = "4.6.5"; - src = self.fetchPypi { - pname = old.pname; - inherit version; - sha256 = "6e84edecc3a82f90d44ddee2ee2a2630d4994b8471816e226d2b771cda7ac4ca"; - }; - }); - werkzeug = super.werkzeug.overridePythonAttrs (old: rec { - version = "2.0.3"; - src = self.fetchPypi { - pname = "Werkzeug"; - inherit version; - sha256 = "sha256-uGP4/wV8UiFktgZ8niiwQRYbS+W6TQ2s7qpQoWOCLTw="; - }; - }); - sentry-sdk = super.sentry-sdk.overridePythonAttrs (old: rec { - disabledTestPaths = old.disabledTestPaths ++ [ - "tests/integrations/flask/test_flask.py" - ]; - }); + django = super.django_4; }; }; @@ -64,7 +35,7 @@ py.pkgs.buildPythonApplication rec { ]; propagatedBuildInputs = with py.pkgs; [ - django_3 + django_4 django-cors-headers django-debug-toolbar django-filter diff --git a/pkgs/servers/web-apps/searx/default.nix b/pkgs/servers/web-apps/searx/default.nix index afcded31116..5327b48d51e 100644 --- a/pkgs/servers/web-apps/searx/default.nix +++ b/pkgs/servers/web-apps/searx/default.nix @@ -31,7 +31,7 @@ toPythonModule (buildPythonApplication rec { ''; propagatedBuildInputs = [ - Babel + babel certifi python-dateutil flask diff --git a/pkgs/servers/web-apps/wiki-js/default.nix b/pkgs/servers/web-apps/wiki-js/default.nix index 496bf02bb03..6da2e3b3d03 100644 --- a/pkgs/servers/web-apps/wiki-js/default.nix +++ b/pkgs/servers/web-apps/wiki-js/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "wiki-js"; - version = "2.5.279"; + version = "2.5.282"; src = fetchurl { url = "https://github.com/Requarks/wiki/releases/download/v${version}/${pname}.tar.gz"; - sha256 = "sha256-4QYNKvAEeRSJS9lO30bI/SnM9rLmuvRMR/LsGT77wvY="; + sha256 = "sha256-cXNO8ChZ2FGAmTmcQDqnZrJpFynmdoocqFy59VCy1RE="; }; sourceRoot = "."; diff --git a/pkgs/servers/wishlist/default.nix b/pkgs/servers/wishlist/default.nix index 73a77a7bfc6..942dd7aa96c 100644 --- a/pkgs/servers/wishlist/default.nix +++ b/pkgs/servers/wishlist/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "wishlist"; - version = "0.4.0"; + version = "0.5.0"; src = fetchFromGitHub { owner = "charmbracelet"; repo = "wishlist"; rev = "v${version}"; - sha256 = "sha256-qXCPxFdwX+z0aaZbqFt7bWPlBJDnr0SDMrBHSALX1aw="; + sha256 = "sha256-J9Wd2CyQo8vzfE2jXQzbNA+oihG71F3ZQmEW/r0a72I=1"; }; - vendorSha256 = "sha256-vLhRZVEiYUCvGqPMtOz/8T6W5AKwkSzPdEglG3AevE8="; + vendorSha256 = "sha256-5+wuavHLXwjtvwA9tSpdF2Zd8tw5FklzvaTeCZlA4WQ="; doCheck = false; diff --git a/pkgs/servers/x11/xorg/overrides.nix b/pkgs/servers/x11/xorg/overrides.nix index b583a72c281..3b670f6b64e 100644 --- a/pkgs/servers/x11/xorg/overrides.nix +++ b/pkgs/servers/x11/xorg/overrides.nix @@ -15,6 +15,10 @@ let malloc0ReturnsNullCrossFlag = lib.optional (stdenv.hostPlatform != stdenv.buildPlatform) "--enable-malloc0returnsnull"; + + brokenOnDarwin = pkg: pkg.overrideAttrs (attrs: { + meta = attrs.meta // { broken = isDarwin; }; + }); in self: super: { @@ -388,14 +392,22 @@ self: super: configureFlags = [ "--with-sdkdir=${placeholder "out"}/include/xorg" ]; + meta = attrs.meta // { + broken = isDarwin; # never worked: https://hydra.nixos.org/job/nixpkgs/trunk/xorg.xf86inputmouse.x86_64-darwin + }; }); xf86inputjoystick = super.xf86inputjoystick.overrideAttrs (attrs: { configureFlags = [ "--with-sdkdir=${placeholder "out"}/include/xorg" ]; + meta = attrs.meta // { + broken = isDarwin; # never worked: https://hydra.nixos.org/job/nixpkgs/trunk/xorg.xf86inputjoystick.x86_64-darwin + }; }); + xf86inputkeyboard = brokenOnDarwin super.xf86inputkeyboard; # never worked: https://hydra.nixos.org/job/nixpkgs/trunk/xorg.xf86inputkeyboard.x86_64-darwin + xf86inputlibinput = super.xf86inputlibinput.overrideAttrs (attrs: { outputs = [ "out" "dev" ]; configureFlags = [ @@ -423,6 +435,12 @@ self: super: }; }); + xf86inputvoid = brokenOnDarwin super.xf86inputvoid; # never worked: https://hydra.nixos.org/job/nixpkgs/trunk/xorg.xf86inputvoid.x86_64-darwin + xf86videodummy = brokenOnDarwin super.xf86videodummy; # never worked: https://hydra.nixos.org/job/nixpkgs/trunk/xorg.xf86videodummy.x86_64-darwin + xf86videosuncg6 = brokenOnDarwin super.xf86videosuncg6; # never worked: https://hydra.nixos.org/job/nixpkgs/trunk/xorg.xf86videosuncg6.x86_64-darwin + xf86videosunffb = brokenOnDarwin super.xf86videosunffb; # never worked: https://hydra.nixos.org/job/nixpkgs/trunk/xorg.xf86videosunffb.x86_64-darwin + xf86videosunleo = brokenOnDarwin super.xf86videosunleo; # never worked: https://hydra.nixos.org/job/nixpkgs/trunk/xorg.xf86videosunleo.x86_64-darwin + # Obsolete drivers that don't compile anymore. xf86videoark = super.xf86videoark.overrideAttrs (attrs: { meta = attrs.meta // { broken = true; }; }); xf86videogeode = super.xf86videogeode.overrideAttrs (attrs: { meta = attrs.meta // { broken = true; }; }); diff --git a/pkgs/servers/zoneminder/default.nix b/pkgs/servers/zoneminder/default.nix index b0828de006f..a698c2e9f7b 100644 --- a/pkgs/servers/zoneminder/default.nix +++ b/pkgs/servers/zoneminder/default.nix @@ -78,13 +78,13 @@ let in stdenv.mkDerivation rec { pname = "zoneminder"; - version = "1.36.10"; + version = "1.36.15"; src = fetchFromGitHub { owner = "ZoneMinder"; repo = "zoneminder"; rev = version; - sha256 = "sha256-MmBnbVDitKOctPe2dNe1sMNNs/qEYGVq3UMJxAkLlCc="; + sha256 = "1qlsg7gd9kpjdbq9d5yrjmc7g1pbscrg4sws7xrdln1z8509sv50"; fetchSubmodules = true; }; diff --git a/pkgs/shells/any-nix-shell/default.nix b/pkgs/shells/any-nix-shell/default.nix index 3bd41a53844..095347a3ca9 100644 --- a/pkgs/shells/any-nix-shell/default.nix +++ b/pkgs/shells/any-nix-shell/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, makeWrapper }: +{ lib, stdenv, fetchFromGitHub, makeWrapper, bash }: stdenv.mkDerivation rec { pname = "any-nix-shell"; @@ -11,7 +11,9 @@ stdenv.mkDerivation rec { sha256 = "0q27rhjhh7k0qgcdcfm8ly5za6wm4rckh633d0sjz87faffkp90k"; }; + strictDeps = true; nativeBuildInputs = [ makeWrapper ]; + buildInputs = [ bash ]; installPhase = '' mkdir -p $out/bin cp -r bin $out diff --git a/pkgs/shells/bash/5.1.nix b/pkgs/shells/bash/5.1.nix index a30c9a4a507..7cd7fb6905c 100644 --- a/pkgs/shells/bash/5.1.nix +++ b/pkgs/shells/bash/5.1.nix @@ -71,6 +71,7 @@ stdenv.mkDerivation rec { "--disable-nls" ]; + strictDeps = true; # Note: Bison is needed because the patches above modify parse.y. depsBuildBuild = [ buildPackages.stdenv.cc ]; nativeBuildInputs = [ bison ] @@ -98,7 +99,7 @@ stdenv.mkDerivation rec { if interactive then '' substituteInPlace "$out/bin/bashbug" \ - --replace '${stdenv.shell}' "$out/bin/bash" + --replace '#!/bin/sh' "#!$out/bin/bash" '' # most space is taken by locale data else '' diff --git a/pkgs/shells/bash/bash-completion/default.nix b/pkgs/shells/bash/bash-completion/default.nix index 6571d572a42..75ded461ea6 100644 --- a/pkgs/shells/bash/bash-completion/default.nix +++ b/pkgs/shells/bash/bash-completion/default.nix @@ -20,6 +20,7 @@ stdenv.mkDerivation rec { sha256 = "1b0iz7da1sgifx1a5wdyx1kxbzys53v0kyk8nhxfipllmm5qka3k"; }; + strictDeps = true; nativeBuildInputs = [ autoreconfHook ]; # tests are super flaky unfortunately, and regularily break. diff --git a/pkgs/shells/bash/nix-bash-completions/default.nix b/pkgs/shells/bash/nix-bash-completions/default.nix index 089e5dfc702..c4282ab0f64 100644 --- a/pkgs/shells/bash/nix-bash-completions/default.nix +++ b/pkgs/shells/bash/nix-bash-completions/default.nix @@ -11,6 +11,7 @@ stdenv.mkDerivation rec { sha256 = "1n5zs6xcnv4bv1hdaypmz7fv4j7dsr4a0ifah99iyj4p5j85i1bc"; }; + strictDeps = true; # To enable lazy loading via. bash-completion we need a symlink to the script # from every command name. installPhase = '' diff --git a/pkgs/shells/bash/undistract-me/default.nix b/pkgs/shells/bash/undistract-me/default.nix index 9ed5544713d..b15903e779e 100644 --- a/pkgs/shells/bash/undistract-me/default.nix +++ b/pkgs/shells/bash/undistract-me/default.nix @@ -43,6 +43,8 @@ stdenvNoCC.mkDerivation rec { }) ]; + strictDeps = true; + # Patch in dependencies. Can't use makeWrapper because the bash # functions will be sourced and invoked in a different environment # for each command invocation. diff --git a/pkgs/shells/bash/yarn-completion/default.nix b/pkgs/shells/bash/yarn-completion/default.nix index fabfc0a1ce2..48d1f42b5ce 100644 --- a/pkgs/shells/bash/yarn-completion/default.nix +++ b/pkgs/shells/bash/yarn-completion/default.nix @@ -15,6 +15,7 @@ stdenv.mkDerivation rec { sha256 = "0xflbrbwskjqv3knvc8jqygpvfxh5ak66q7w22d1ng8gwrfqzcng"; }; + strictDeps = true; nativeBuildInputs = [ installShellFiles ]; installPhase = '' diff --git a/pkgs/shells/dash/default.nix b/pkgs/shells/dash/default.nix index a1f789dc3a3..f33fd5520f8 100644 --- a/pkgs/shells/dash/default.nix +++ b/pkgs/shells/dash/default.nix @@ -35,6 +35,7 @@ stdenv.mkDerivation rec { }) ]; + strictDeps = true; # configure.ac patched; remove on next release nativeBuildInputs = [ autoreconfHook ]; diff --git a/pkgs/shells/dgsh/default.nix b/pkgs/shells/dgsh/default.nix index 7a6ae67c3ae..2c98938b46d 100644 --- a/pkgs/shells/dgsh/default.nix +++ b/pkgs/shells/dgsh/default.nix @@ -41,5 +41,8 @@ stdenv.mkDerivation { license = with licenses; asl20; maintainers = with maintainers; [ vrthra ]; platforms = with platforms; all; + # lib/freadseek.c:68:3: error: #error "Please port gnulib freadseek.c to your platform! Look at the definition of getc, getc_unlocked on your > + # 68 | #error "Please port gnulib freadseek.c to your platform! Look at the definition of getc, getc_unlocked on your system, then report > + broken = true; # marked 2022-05-06 }; } diff --git a/pkgs/shells/elvish/default.nix b/pkgs/shells/elvish/default.nix index fc61efc3006..f0c5611e3b3 100644 --- a/pkgs/shells/elvish/default.nix +++ b/pkgs/shells/elvish/default.nix @@ -17,6 +17,7 @@ buildGoModule rec { vendorSha256 = "sha256-iuklI7XEQUgZ2ObYRROxyiccZ1JkajK5OJA7hIcpRZQ="; + strictDeps = true; doCheck = false; doInstallCheck = true; diff --git a/pkgs/shells/es/default.nix b/pkgs/shells/es/default.nix index 8cc49bd39eb..308a684e6f6 100644 --- a/pkgs/shells/es/default.nix +++ b/pkgs/shells/es/default.nix @@ -17,7 +17,9 @@ stdenv.mkDerivation rec { sourceRoot=. ''; - buildInputs = [ readline bison ]; + strictDeps = true; + nativeBuildInputs = [ bison ]; + buildInputs = [ readline ]; configureFlags = [ "--with-readline" ]; diff --git a/pkgs/shells/fish/default.nix b/pkgs/shells/fish/default.nix index 4c45fd3a75f..e9555c7f21f 100644 --- a/pkgs/shells/fish/default.nix +++ b/pkgs/shells/fish/default.nix @@ -186,6 +186,7 @@ let rm tests/pexpects/exit_handlers.py ''; + strictDeps = true; nativeBuildInputs = [ cmake gettext diff --git a/pkgs/shells/fish/oh-my-fish/default.nix b/pkgs/shells/fish/oh-my-fish/default.nix index 3ec4e3b12d7..252e9350eaf 100644 --- a/pkgs/shells/fish/oh-my-fish/default.nix +++ b/pkgs/shells/fish/oh-my-fish/default.nix @@ -2,6 +2,7 @@ , stdenv , fetchFromGitHub , fish +, bash , runtimeShell , writeShellScript }: @@ -17,8 +18,10 @@ stdenv.mkDerivation rec { hash = "sha256-lwMo4+PcYR9kYJPWK+ALiMfBdxFSgB2vjtSn8QrmmEA="; }; + strictDeps = true; buildInputs = [ fish + bash ]; dontConfigure = true; diff --git a/pkgs/shells/jush/default.nix b/pkgs/shells/jush/default.nix index 12cd6c935c0..a09024608bb 100644 --- a/pkgs/shells/jush/default.nix +++ b/pkgs/shells/jush/default.nix @@ -11,6 +11,7 @@ stdenv.mkDerivation rec { sha256 = "1azvghrh31gawd798a254ml4id642qvbva64zzg30pjszh1087n8"; }; + strictDeps = true; nativeBuildInputs = [ autoreconfHook pkg-config ]; buildInputs = [ editline ]; diff --git a/pkgs/shells/liquidprompt/default.nix b/pkgs/shells/liquidprompt/default.nix index 8575f6439b9..4f06225e94f 100644 --- a/pkgs/shells/liquidprompt/default.nix +++ b/pkgs/shells/liquidprompt/default.nix @@ -11,6 +11,7 @@ stdenv.mkDerivation rec { sha256 = "sha256-ntCfXJUOQqL63HWoG+WJr9a+qB16AaL5zf58039t7GU="; }; + strictDeps = true; installPhase = '' install -D -m 0444 liquidprompt $out/bin/liquidprompt install -D -m 0444 liquidpromptrc-dist $out/share/doc/liquidprompt/liquidpromptrc-dist diff --git a/pkgs/shells/loksh/default.nix b/pkgs/shells/loksh/default.nix index b9f7d5ef7e7..5b304e45c5b 100644 --- a/pkgs/shells/loksh/default.nix +++ b/pkgs/shells/loksh/default.nix @@ -19,6 +19,7 @@ stdenv.mkDerivation rec { sha256 = "sha256-q5RiY9/xEFCk+oHlxgNwDOB+TNjRWHKzU2kQH2LjCWY="; }; + strictDeps = true; nativeBuildInputs = [ meson ninja @@ -47,4 +48,3 @@ stdenv.mkDerivation rec { platforms = platforms.linux; }; } - diff --git a/pkgs/shells/mksh/default.nix b/pkgs/shells/mksh/default.nix index 360380e19b3..3e4791e2b8a 100644 --- a/pkgs/shells/mksh/default.nix +++ b/pkgs/shells/mksh/default.nix @@ -10,12 +10,13 @@ stdenv.mkDerivation rec { src = fetchurl { urls = [ - "https://www.mirbsd.org/MirOS/dist/mir/mksh/${pname}-R${version}.tgz" + "http://www.mirbsd.org/MirOS/dist/mir/mksh/${pname}-R${version}.tgz" "http://pub.allbsd.org/MirOS/dist/mir/mksh/${pname}-R${version}.tgz" ]; hash = "sha256-d64WZaM38cSMYda5Yds+UhGbOOWIhNHIloSvMfh7xQY="; }; + strictDeps = true; nativeBuildInputs = [ installShellFiles ]; @@ -37,6 +38,7 @@ stdenv.mkDerivation rec { ''; meta = with lib; { + homepage = "http://www.mirbsd.org/mksh.htm"; description = "MirBSD Korn Shell"; longDescription = '' The MirBSD Korn Shell is a DFSG-free and OSD-compliant (and OSI @@ -45,7 +47,6 @@ stdenv.mkDerivation rec { also to be readily available under other UNIX(R)-like operating systems. ''; - homepage = "https://www.mirbsd.org/mksh.htm"; license = with licenses; [ miros isc unicode-dfs-2016 ]; maintainers = with maintainers; [ AndersonTorres joachifm ]; platforms = platforms.unix; diff --git a/pkgs/shells/mrsh/default.nix b/pkgs/shells/mrsh/default.nix index be87b97ebd7..2b9bc4e3e22 100644 --- a/pkgs/shells/mrsh/default.nix +++ b/pkgs/shells/mrsh/default.nix @@ -11,6 +11,7 @@ stdenv.mkDerivation rec { sha256 = "0vvdwzw3fq74lwgmy6xxkk01sd68fzhsw84c750lm1dma22xhjci"; }; + strictDeps = true; nativeBuildInputs = [ meson ninja pkg-config ]; buildInputs = [ readline ]; diff --git a/pkgs/shells/nushell/default.nix b/pkgs/shells/nushell/default.nix index 7eeaef0f45a..9da58871672 100644 --- a/pkgs/shells/nushell/default.nix +++ b/pkgs/shells/nushell/default.nix @@ -18,16 +18,16 @@ rustPlatform.buildRustPackage rec { pname = "nushell"; - version = "0.61.0"; + version = "0.62.0"; src = fetchFromGitHub { owner = pname; repo = pname; rev = version; - sha256 = "sha256-1wTMXlFViJh/x+W7WqZ9uf1SV6X4er6SWO6qTjf9C94="; + sha256 = "sha256-fEwsoAbrV4fSreyB4+xcN8PGDlkLyaK+ptwgZrsBuLk="; }; - cargoSha256 = "sha256-aG5otxeVGBAi8uZd7xRnvwapfKT3kToBiYhFUTYIgHM="; + cargoSha256 = "sha256-C4Eynvk3ogIl/RDwyA28hYKlkHA2eMYSCyIvAbp+NQo="; nativeBuildInputs = [ pkg-config ] ++ lib.optionals (withExtraFeatures && stdenv.isLinux) [ python3 ]; diff --git a/pkgs/shells/oil/default.nix b/pkgs/shells/oil/default.nix index 2b82d488278..f99c285a4f0 100644 --- a/pkgs/shells/oil/default.nix +++ b/pkgs/shells/oil/default.nix @@ -17,6 +17,7 @@ stdenv.mkDerivation rec { mkdir -p $out/bin ''; + strictDeps = true; buildInputs = lib.optional withReadline readline; configureFlags = lib.optional withReadline "--with-readline"; diff --git a/pkgs/shells/oksh/default.nix b/pkgs/shells/oksh/default.nix index 418a453d9e9..c56bd179c74 100644 --- a/pkgs/shells/oksh/default.nix +++ b/pkgs/shells/oksh/default.nix @@ -11,6 +11,8 @@ stdenv.mkDerivation rec { sha256 = "sha256-076nD0aPps6n5qkR3LQJ6Kn2g3mkov+/M0qSvxNLZ6o="; }; + strictDeps = true; + postPatch = lib.optionalString (stdenv.buildPlatform != stdenv.hostPlatform) '' substituteInPlace configure --replace "./conftest" "echo" ''; diff --git a/pkgs/shells/pash/default.nix b/pkgs/shells/pash/default.nix index 431091bf8d1..c9150fda18a 100644 --- a/pkgs/shells/pash/default.nix +++ b/pkgs/shells/pash/default.nix @@ -11,6 +11,7 @@ buildDotnetPackage { sha256 = "0c4wa8qi1zs01p9ck171jkw0n1rsymsrhpsb42gl7warwhpmv59f"; }; + strictDeps = true; preConfigure = "rm -rvf $src/Source/PashConsole/bin/*"; outputFiles = [ "Source/PashConsole/bin/Release/*" ]; diff --git a/pkgs/shells/powershell/default.nix b/pkgs/shells/powershell/default.nix index 9f3dcbe1812..445dca9f4a4 100644 --- a/pkgs/shells/powershell/default.nix +++ b/pkgs/shells/powershell/default.nix @@ -28,6 +28,7 @@ stdenv.mkDerivation rec { stripRoot = false; }; + strictDeps = true; buildInputs = [ less ] ++ libraries; nativeBuildInputs = [ makeWrapper ] ++ lib.optional stdenv.isLinux autoPatchelfHook; diff --git a/pkgs/shells/rc/default.nix b/pkgs/shells/rc/default.nix index 804919665ec..5783607751a 100644 --- a/pkgs/shells/rc/default.nix +++ b/pkgs/shells/rc/default.nix @@ -13,10 +13,11 @@ stdenv.mkDerivation rec { sha256 = "0744ars6y9zzsjr9xazms91qy6bi7msg2gg87526waziahfh4s4z"; }; - nativeBuildInputs = [ autoreconfHook ]; + strictDeps = true; + nativeBuildInputs = [ autoreconfHook byacc ]; # acinclude.m4 wants headers for tgetent(). - buildInputs = [ byacc ncurses ] + buildInputs = [ ncurses ] ++ lib.optionals readlineSupport [ readline ]; configureFlags = [ diff --git a/pkgs/shells/rush/default.nix b/pkgs/shells/rush/default.nix index d840c3b77a5..c9560c86f24 100644 --- a/pkgs/shells/rush/default.nix +++ b/pkgs/shells/rush/default.nix @@ -1,4 +1,4 @@ -{ fetchurl, lib, stdenv }: +{ fetchurl, lib, stdenv, bash, perl }: stdenv.mkDerivation rec { pname = "rush"; @@ -9,6 +9,14 @@ stdenv.mkDerivation rec { sha256 = "sha256-ld5TdpF7siprQCbhE4oxYhH40x3QZ5NCQlD3zRaNmM0="; }; + strictDeps = true; + buildInputs = [ bash ]; + + postInstall = '' + substituteInPlace $out/bin/rush-po \ + --replace "exec perl" "exec ${lib.getExe perl}" + ''; + doCheck = true; meta = { diff --git a/pkgs/shells/scponly/default.nix b/pkgs/shells/scponly/default.nix index c0c39d8e316..f15f04cfe22 100644 --- a/pkgs/shells/scponly/default.nix +++ b/pkgs/shells/scponly/default.nix @@ -13,14 +13,15 @@ stdenv.mkDerivation { patches = [ ./scponly-fix-make.patch ]; - buildInputs = [ openssh ]; - - # Add path to sftp-server so configure finds it - preConfigure = "export PATH=$PATH:${openssh}/libexec"; + strictDeps = true; # chroot doesn't seem to work, so not enabling # rsync could also be optionally enabled - configureFlags = [ "--enable-winscp-compat" ]; + configureFlags = [ + "--enable-winscp-compat" + "scponly_PROG_SFTP_SERVER=${lib.getBin openssh}/libexec/sftp-server" + "scponly_PROG_SCP=${lib.getBin openssh}/bin/scp" + ]; postInstall = lib.optionalString (debugLevel > 0) '' mkdir -p $out/etc/scponly && echo ${ diff --git a/pkgs/shells/tcsh/default.nix b/pkgs/shells/tcsh/default.nix index 4357ca605b1..4fac6eb13d6 100644 --- a/pkgs/shells/tcsh/default.nix +++ b/pkgs/shells/tcsh/default.nix @@ -14,6 +14,7 @@ stdenv.mkDerivation rec { hash = "sha256-YL4sUEvY8fpuQksZVkldfnztUqKslNtf0n9La/yPdPA="; }; + strictDeps = true; buildInputs = [ ncurses ]; diff --git a/pkgs/shells/yash/default.nix b/pkgs/shells/yash/default.nix index 44faf5c4e02..01340df5e9a 100644 --- a/pkgs/shells/yash/default.nix +++ b/pkgs/shells/yash/default.nix @@ -9,6 +9,7 @@ stdenv.mkDerivation rec { sha256 = "sha256:1jdmj4cyzwxxyyqf20y1zi578h7md860ryffp02qi143zpppn4sm"; }; + strictDeps = true; buildInputs = [ gettext ncurses ]; meta = with lib; { diff --git a/pkgs/shells/zsh/agkozak-zsh-prompt/default.nix b/pkgs/shells/zsh/agkozak-zsh-prompt/default.nix index 91d1bd3022b..5f9573b71aa 100644 --- a/pkgs/shells/zsh/agkozak-zsh-prompt/default.nix +++ b/pkgs/shells/zsh/agkozak-zsh-prompt/default.nix @@ -11,6 +11,7 @@ stdenvNoCC.mkDerivation rec { sha256 = "sha256-TOfAWxw1uIV0hKV9o4EJjOlp+jmGWCONDex86ipegOY="; }; + strictDeps = true; dontConfigure = true; dontBuild = true; diff --git a/pkgs/shells/zsh/antigen/default.nix b/pkgs/shells/zsh/antigen/default.nix index 9a69f90dca3..ca5fbee6e36 100644 --- a/pkgs/shells/zsh/antigen/default.nix +++ b/pkgs/shells/zsh/antigen/default.nix @@ -9,6 +9,7 @@ stdenv.mkDerivation rec { sha256 = "1bmp3qf14509swpxin4j9f98n05pdilzapjm0jdzbv0dy3hn20ix"; }; + strictDeps = true; dontUnpack = true; installPhase = '' diff --git a/pkgs/shells/zsh/default.nix b/pkgs/shells/zsh/default.nix index 5a2c0d050ce..f09a0672f19 100644 --- a/pkgs/shells/zsh/default.nix +++ b/pkgs/shells/zsh/default.nix @@ -30,7 +30,8 @@ stdenv.mkDerivation { ./tz_completion.patch ]; - nativeBuildInputs = [ autoreconfHook perl groff texinfo ] + strictDeps = true; + nativeBuildInputs = [ autoreconfHook perl groff texinfo pcre] ++ lib.optionals stdenv.isLinux [ util-linux yodl ]; buildInputs = [ ncurses pcre ]; diff --git a/pkgs/shells/zsh/fzf-zsh/default.nix b/pkgs/shells/zsh/fzf-zsh/default.nix index ac5cab94d4c..aa5af013e43 100644 --- a/pkgs/shells/zsh/fzf-zsh/default.nix +++ b/pkgs/shells/zsh/fzf-zsh/default.nix @@ -11,6 +11,7 @@ stdenv.mkDerivation rec { sha256 = "1irjmxhcg1fm4g8p3psjqk7sz5qhj5kw73pyhv91njvpdhn9l26z"; }; + strictDeps = true; postPatch = '' substituteInPlace fzf-zsh.plugin.zsh \ --replace \ diff --git a/pkgs/shells/zsh/gradle-completion/default.nix b/pkgs/shells/zsh/gradle-completion/default.nix index bf5969d1300..fa40db3603b 100644 --- a/pkgs/shells/zsh/gradle-completion/default.nix +++ b/pkgs/shells/zsh/gradle-completion/default.nix @@ -11,6 +11,8 @@ stdenv.mkDerivation rec { sha256 = "15b0692i3h8h7b95465b2aw9qf5qjmjag5n62347l8yl7zbhv3l2"; }; + strictDeps = true; + # we just move two files into $out, # this shouldn't bother Hydra. preferLocalBuild = true; diff --git a/pkgs/shells/zsh/grml-zsh-config/default.nix b/pkgs/shells/zsh/grml-zsh-config/default.nix index 538fbc0a522..feb55d9ccde 100644 --- a/pkgs/shells/zsh/grml-zsh-config/default.nix +++ b/pkgs/shells/zsh/grml-zsh-config/default.nix @@ -14,7 +14,9 @@ stdenv.mkDerivation rec { sha256 = "sha256-GEuBYN6HVAjiAbusVuEA7zBG9fIVZHLV628Jt6Cv5cM="; }; - buildInputs = [ zsh coreutils txt2tags procps ] + strictDeps = true; + nativeBuildInputs = [ txt2tags ]; + buildInputs = [ zsh coreutils procps ] ++ optional stdenv.isLinux inetutils; buildPhase = '' diff --git a/pkgs/shells/zsh/lambda-mod-zsh-theme/default.nix b/pkgs/shells/zsh/lambda-mod-zsh-theme/default.nix index e8d00d73d1a..eae5f77904b 100644 --- a/pkgs/shells/zsh/lambda-mod-zsh-theme/default.nix +++ b/pkgs/shells/zsh/lambda-mod-zsh-theme/default.nix @@ -11,6 +11,7 @@ stdenv.mkDerivation { sha256 = "0fvxnvgbcvwii7ghvpj5l43frllq71wwjvfg7cqfmic727z001dh"; }; + strictDeps = true; installPhase = '' install -Dm0644 lambda-mod.zsh-theme $out/share/zsh/themes/lambda-mod.zsh-theme ''; diff --git a/pkgs/shells/zsh/nix-zsh-completions/default.nix b/pkgs/shells/zsh/nix-zsh-completions/default.nix index 472cc47459c..dab73419ab5 100644 --- a/pkgs/shells/zsh/nix-zsh-completions/default.nix +++ b/pkgs/shells/zsh/nix-zsh-completions/default.nix @@ -11,6 +11,7 @@ stdenv.mkDerivation rec { sha256 = "1n9whlys95k4wc57cnz3n07p7zpkv796qkmn68a50ygkx6h3afqf"; }; + strictDeps = true; installPhase = '' mkdir -p $out/share/zsh/{site-functions,plugins/nix} cp _* $out/share/zsh/site-functions diff --git a/pkgs/shells/zsh/oh-my-zsh/default.nix b/pkgs/shells/zsh/oh-my-zsh/default.nix index 447dc5da78a..84c3a1abf28 100644 --- a/pkgs/shells/zsh/oh-my-zsh/default.nix +++ b/pkgs/shells/zsh/oh-my-zsh/default.nix @@ -2,7 +2,7 @@ # # https://aur.archlinux.org/cgit/aur.git/tree/PKGBUILD?h=oh-my-zsh-git { lib, stdenv, fetchFromGitHub, nixosTests, writeScript, common-updater-scripts -, git, nix, nixfmt, jq, coreutils, gnused, curl, cacert }: +, git, nix, nixfmt, jq, coreutils, gnused, curl, cacert, bash }: stdenv.mkDerivation rec { version = "2022-04-24"; @@ -16,6 +16,9 @@ stdenv.mkDerivation rec { sha256 = "yxuvVDjNCH7r/g6ZoF8kEzwirBB0s+CRQizBwRR4Sp4="; }; + strictDeps = true; + buildInputs = [ bash ]; + installPhase = '' runHook preInstall diff --git a/pkgs/shells/zsh/pure-prompt/default.nix b/pkgs/shells/zsh/pure-prompt/default.nix index 09be79d6fbc..994f223b58d 100644 --- a/pkgs/shells/zsh/pure-prompt/default.nix +++ b/pkgs/shells/zsh/pure-prompt/default.nix @@ -13,6 +13,7 @@ stdenv.mkDerivation rec { sha256 = "sha256-iuLi0o++e0PqK81AKWfIbCV0CTIxq2Oki6U2oEYsr68="; }; + strictDeps = true; installPhase = '' OUTDIR="$out/share/zsh/site-functions" mkdir -p "$OUTDIR" diff --git a/pkgs/shells/zsh/spaceship-prompt/default.nix b/pkgs/shells/zsh/spaceship-prompt/default.nix index 5bdcb21f8dd..7dfbb14eec6 100644 --- a/pkgs/shells/zsh/spaceship-prompt/default.nix +++ b/pkgs/shells/zsh/spaceship-prompt/default.nix @@ -11,6 +11,7 @@ stdenvNoCC.mkDerivation rec { sha256 = "sha256-4G1+K6ENLwChtivR7Ura0vl6Ph9Wae3SOXCW1pNbgHI="; }; + strictDeps = true; dontBuild = true; installPhase = '' diff --git a/pkgs/shells/zsh/zinit/default.nix b/pkgs/shells/zsh/zinit/default.nix index 9946d7d0c3a..ca8b7ea2e46 100644 --- a/pkgs/shells/zsh/zinit/default.nix +++ b/pkgs/shells/zsh/zinit/default.nix @@ -11,6 +11,7 @@ stdenvNoCC.mkDerivation rec { }; # adapted from https://aur.archlinux.org/cgit/aur.git/tree/PKGBUILD?h=zsh-zplugin-git dontBuild = true; + strictDeps = true; nativeBuildInputs = [ installShellFiles ]; installPhase = '' outdir="$out/share/$pname" diff --git a/pkgs/shells/zsh/zplug/default.nix b/pkgs/shells/zsh/zplug/default.nix index 0660bbe7e7b..c6c80ba6a13 100644 --- a/pkgs/shells/zsh/zplug/default.nix +++ b/pkgs/shells/zsh/zplug/default.nix @@ -11,6 +11,7 @@ stdenv.mkDerivation rec { sha256 = "0hci1pbs3k5icwfyfw5pzcgigbh9vavprxxvakg1xm19n8zb61b3"; }; + strictDeps = true; dontConfigure = true; dontBuild = true; dontPatch = true; diff --git a/pkgs/shells/zsh/zsh-autocomplete/default.nix b/pkgs/shells/zsh/zsh-autocomplete/default.nix index 14ea0ec8f63..a5683c43227 100644 --- a/pkgs/shells/zsh/zsh-autocomplete/default.nix +++ b/pkgs/shells/zsh/zsh-autocomplete/default.nix @@ -11,6 +11,7 @@ stdenvNoCC.mkDerivation rec { sha256 = "sha256-+UziTYsjgpiumSulrLojuqHtDrgvuG91+XNiaMD7wIs="; }; + strictDeps = true; installPhase = '' install -D zsh-autocomplete.plugin.zsh $out/share/zsh-autocomplete/zsh-autocomplete.plugin.zsh cp -R scripts $out/share/zsh-autocomplete/scripts diff --git a/pkgs/shells/zsh/zsh-autopair/default.nix b/pkgs/shells/zsh/zsh-autopair/default.nix index 0cc1535e53a..73b70c00405 100644 --- a/pkgs/shells/zsh/zsh-autopair/default.nix +++ b/pkgs/shells/zsh/zsh-autopair/default.nix @@ -11,6 +11,8 @@ stdenv.mkDerivation rec { sha256 = "1h0vm2dgrmb8i2pvsgis3lshc5b0ad846836m62y8h3rdb3zmpy1"; }; + strictDeps = true; + installPhase = '' install -D autopair.zsh $out/share/zsh/${pname}/autopair.zsh ''; diff --git a/pkgs/shells/zsh/zsh-autosuggestions/default.nix b/pkgs/shells/zsh/zsh-autosuggestions/default.nix index e261cdedc74..b1df50a9c68 100644 --- a/pkgs/shells/zsh/zsh-autosuggestions/default.nix +++ b/pkgs/shells/zsh/zsh-autosuggestions/default.nix @@ -13,6 +13,7 @@ stdenv.mkDerivation rec { sha256 = "1g3pij5qn2j7v7jjac2a63lxd97mcsgw6xq6k5p7835q9fjiid98"; }; + strictDeps = true; buildInputs = [ zsh ]; installPhase = '' diff --git a/pkgs/shells/zsh/zsh-bd/default.nix b/pkgs/shells/zsh/zsh-bd/default.nix index f2c2dc90fb4..ebfa55ecd22 100644 --- a/pkgs/shells/zsh/zsh-bd/default.nix +++ b/pkgs/shells/zsh/zsh-bd/default.nix @@ -11,6 +11,7 @@ stdenv.mkDerivation rec { sha256 = "020f8nq86g96cps64hwrskppbh2dapfw2m9np1qbs5pgh16z4fcb"; }; + strictDeps = true; dontBuild = true; installPhase = '' diff --git a/pkgs/shells/zsh/zsh-better-npm-completion/default.nix b/pkgs/shells/zsh/zsh-better-npm-completion/default.nix index 372d49eaeb7..d9a813bbbfd 100644 --- a/pkgs/shells/zsh/zsh-better-npm-completion/default.nix +++ b/pkgs/shells/zsh/zsh-better-npm-completion/default.nix @@ -11,6 +11,7 @@ stdenv.mkDerivation rec { sha256 = "16z7k5n1rcl9i61lrm7i5dsqsmhvdp1y4y5ii6hv2xpp470addgy"; }; + strictDeps = true; installPhase = '' install -Dm 0644 zsh-better-npm-completion.plugin.zsh $out/share/zsh-better-npm-completion ''; diff --git a/pkgs/shells/zsh/zsh-clipboard/default.nix b/pkgs/shells/zsh/zsh-clipboard/default.nix index 114e0bfd7dc..eb395d74472 100644 --- a/pkgs/shells/zsh/zsh-clipboard/default.nix +++ b/pkgs/shells/zsh/zsh-clipboard/default.nix @@ -6,6 +6,7 @@ stdenv.mkDerivation rec { src = ./.; + strictDeps = true; dontBuild = true; installPhase = '' diff --git a/pkgs/shells/zsh/zsh-command-time/default.nix b/pkgs/shells/zsh/zsh-command-time/default.nix index b92ced6be71..c10b67c2b3d 100644 --- a/pkgs/shells/zsh/zsh-command-time/default.nix +++ b/pkgs/shells/zsh/zsh-command-time/default.nix @@ -19,6 +19,7 @@ stdenv.mkDerivation { sha256 = "1bvyjgz6bhgg1nwr56r50p6fblgah6yiql55pgm5abnn2h876fjq"; }; + strictDeps = true; dontUnpack = true; installPhase = '' diff --git a/pkgs/shells/zsh/zsh-completions/default.nix b/pkgs/shells/zsh/zsh-completions/default.nix index 249826a2a25..937114e982e 100644 --- a/pkgs/shells/zsh/zsh-completions/default.nix +++ b/pkgs/shells/zsh/zsh-completions/default.nix @@ -11,6 +11,7 @@ stdenv.mkDerivation rec { sha256 = "0vs14n29wvkai84fvz3dz2kqznwsq2i5fzbwpv8nsfk1126ql13i"; }; + strictDeps = true; installPhase= '' install -D --target-directory=$out/share/zsh/site-functions src/* ''; diff --git a/pkgs/shells/zsh/zsh-deer/default.nix b/pkgs/shells/zsh/zsh-deer/default.nix index ab544d7c314..0d3a6bc9ee6 100644 --- a/pkgs/shells/zsh/zsh-deer/default.nix +++ b/pkgs/shells/zsh/zsh-deer/default.nix @@ -11,6 +11,8 @@ stdenv.mkDerivation rec { sha256 = "1xnbnbi0zk2xsyn8dqsmyxqlfnl36pb1wwibnlp0dxixw6sfymyl"; }; + strictDeps = true; + prePatch = '' substituteInPlace deer \ --replace " perl " " ${perl}/bin/perl " diff --git a/pkgs/shells/zsh/zsh-fast-syntax-highlighting/default.nix b/pkgs/shells/zsh/zsh-fast-syntax-highlighting/default.nix index 5b77978c022..68f09828b45 100644 --- a/pkgs/shells/zsh/zsh-fast-syntax-highlighting/default.nix +++ b/pkgs/shells/zsh/zsh-fast-syntax-highlighting/default.nix @@ -11,6 +11,7 @@ stdenvNoCC.mkDerivation rec { sha256 = "0h7f27gz586xxw7cc0wyiv3bx0x3qih2wwh05ad85bh2h834ar8d"; }; + strictDeps = true; dontConfigure = true; dontBuild = true; diff --git a/pkgs/shells/zsh/zsh-fzf-tab/default.nix b/pkgs/shells/zsh/zsh-fzf-tab/default.nix index be12ec147d5..5ce66fd8133 100644 --- a/pkgs/shells/zsh/zsh-fzf-tab/default.nix +++ b/pkgs/shells/zsh/zsh-fzf-tab/default.nix @@ -13,6 +13,7 @@ in stdenv.mkDerivation rec { sha256 = "sha256-ixUnuNtxxmiigeVjzuV5uG6rIBPY/1vdBZF2/Qv0Trs="; }; + strictDeps = true; buildInputs = [ ncurses ]; postConfigure = '' diff --git a/pkgs/shells/zsh/zsh-history-search-multi-word/default.nix b/pkgs/shells/zsh/zsh-history-search-multi-word/default.nix index 09d2136ea26..30d26c96766 100644 --- a/pkgs/shells/zsh/zsh-history-search-multi-word/default.nix +++ b/pkgs/shells/zsh/zsh-history-search-multi-word/default.nix @@ -11,6 +11,7 @@ stdenvNoCC.mkDerivation rec { sha256 = "11r2mmy6bg3b6pf6qc0ml3idh333cj8yz754hrvd1sc4ipfkkqh7"; }; + strictDeps = true; dontConfigure = true; dontBuild = true; diff --git a/pkgs/shells/zsh/zsh-history-substring-search/default.nix b/pkgs/shells/zsh/zsh-history-substring-search/default.nix index 9890993eed6..63e5fe8281e 100644 --- a/pkgs/shells/zsh/zsh-history-substring-search/default.nix +++ b/pkgs/shells/zsh/zsh-history-substring-search/default.nix @@ -11,6 +11,7 @@ stdenv.mkDerivation rec { sha256 = "0y8va5kc2ram38hbk2cibkk64ffrabfv1sh4xm7pjspsba9n5p1y"; }; + strictDeps = true; installPhase = '' install -D zsh-history-substring-search.zsh \ "$out/share/zsh-history-substring-search/zsh-history-substring-search.zsh" diff --git a/pkgs/shells/zsh/zsh-nix-shell/default.nix b/pkgs/shells/zsh/zsh-nix-shell/default.nix index 8b463eda573..e46a5cf727c 100644 --- a/pkgs/shells/zsh/zsh-nix-shell/default.nix +++ b/pkgs/shells/zsh/zsh-nix-shell/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, pkgs }: +{ lib, stdenv, fetchFromGitHub, bash }: # To make use of this derivation, use # `programs.zsh.interactiveShellInit = "source ${pkgs.zsh-nix-shell}/share/zsh-nix-shell/nix-shell.plugin.zsh";` @@ -14,6 +14,8 @@ stdenv.mkDerivation rec { sha256 = "sha256-719lVo6p55G1tt3+6nMhZ904nyvlq0Q5exb0il36/Aw="; }; + strictDeps = true; + buildInputs = [ bash ]; installPhase = '' install -D nix-shell.plugin.zsh --target-directory=$out/share/zsh-nix-shell install -D scripts/* --target-directory=$out/share/zsh-nix-shell/scripts diff --git a/pkgs/shells/zsh/zsh-powerlevel10k/default.nix b/pkgs/shells/zsh/zsh-powerlevel10k/default.nix index 19d3e70c0a3..cdda7d81f41 100644 --- a/pkgs/shells/zsh/zsh-powerlevel10k/default.nix +++ b/pkgs/shells/zsh/zsh-powerlevel10k/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, substituteAll, pkgs }: +{ lib, stdenv, fetchFromGitHub, substituteAll, pkgs, bash }: # To make use of this derivation, use # `programs.zsh.promptInit = "source ${pkgs.zsh-powerlevel10k}/share/zsh-powerlevel10k/powerlevel10k.zsh-theme";` @@ -28,6 +28,9 @@ stdenv.mkDerivation rec { sha256 = "0fkfh8j7rd8mkpgz6nsx4v7665d375266shl1aasdad8blgqmf0c"; }; + strictDeps = true; + buildInputs = [ bash ]; + patches = [ (substituteAll { src = ./gitstatusd.patch; diff --git a/pkgs/shells/zsh/zsh-powerlevel9k/default.nix b/pkgs/shells/zsh/zsh-powerlevel9k/default.nix index b681dc2d3a3..27e3a648e2b 100644 --- a/pkgs/shells/zsh/zsh-powerlevel9k/default.nix +++ b/pkgs/shells/zsh/zsh-powerlevel9k/default.nix @@ -13,6 +13,7 @@ stdenv.mkDerivation { sha256 = "0v1dqg9hvycdkcvklg2njff97xwr8rah0nyldv4xm39r77f4yfvq"; }; + strictDeps = true; installPhase= '' install -D powerlevel9k.zsh-theme --target-directory=$out/share/zsh-powerlevel9k install -D functions/* --target-directory=$out/share/zsh-powerlevel9k/functions diff --git a/pkgs/shells/zsh/zsh-prezto/default.nix b/pkgs/shells/zsh/zsh-prezto/default.nix index e4bbd7a8b64..6201e42c0c0 100644 --- a/pkgs/shells/zsh/zsh-prezto/default.nix +++ b/pkgs/shells/zsh/zsh-prezto/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, unstableGitUpdater }: +{ lib, stdenv, fetchFromGitHub, unstableGitUpdater, bash }: stdenv.mkDerivation rec { pname = "zsh-prezto"; @@ -12,6 +12,9 @@ stdenv.mkDerivation rec { fetchSubmodules = true; }; + strictDeps = true; + buildInputs = [ bash ]; + postPatch = '' # make zshrc aware of where zsh-prezto is installed sed -i -e "s|\''${ZDOTDIR:\-\$HOME}/.zprezto/|$out/share/zsh-prezto/|g" runcoms/zshrc diff --git a/pkgs/shells/zsh/zsh-syntax-highlighting/default.nix b/pkgs/shells/zsh/zsh-syntax-highlighting/default.nix index 09d6eb3cf96..ef76798ccf4 100644 --- a/pkgs/shells/zsh/zsh-syntax-highlighting/default.nix +++ b/pkgs/shells/zsh/zsh-syntax-highlighting/default.nix @@ -13,6 +13,7 @@ stdenv.mkDerivation rec { sha256 = "03r6hpb5fy4yaakqm3lbf4xcvd408r44jgpv4lnzl9asp4sb9qc0"; }; + strictDeps = true; buildInputs = [ zsh ]; installFlags = [ "PREFIX=$(out)" ]; diff --git a/pkgs/shells/zsh/zsh-system-clipboard/default.nix b/pkgs/shells/zsh/zsh-system-clipboard/default.nix index b4d407a70bc..6e875b6ee08 100644 --- a/pkgs/shells/zsh/zsh-system-clipboard/default.nix +++ b/pkgs/shells/zsh/zsh-system-clipboard/default.nix @@ -11,6 +11,7 @@ stdenv.mkDerivation rec { sha256 = "09lqav1mz5zajklr3xa0iaivhpykv3azkjb7yj9wyp0hq3vymp8i"; }; + strictDeps = true; installPhase = '' install -D zsh-system-clipboard.zsh $out/share/zsh/${pname}/zsh-system-clipboard.zsh ''; diff --git a/pkgs/shells/zsh/zsh-vi-mode/default.nix b/pkgs/shells/zsh/zsh-vi-mode/default.nix index 32f1e9c024a..73eae88b71d 100644 --- a/pkgs/shells/zsh/zsh-vi-mode/default.nix +++ b/pkgs/shells/zsh/zsh-vi-mode/default.nix @@ -11,6 +11,7 @@ stdenv.mkDerivation rec { sha256 = "EOYqHh0rcgoi26eopm6FTl81ehak5kXMmzNcnJDH8/E="; }; + strictDeps = true; dontBuild = true; installPhase = '' diff --git a/pkgs/shells/zsh/zsh-you-should-use/default.nix b/pkgs/shells/zsh/zsh-you-should-use/default.nix index 8019e75a859..95cdb3273c5 100644 --- a/pkgs/shells/zsh/zsh-you-should-use/default.nix +++ b/pkgs/shells/zsh/zsh-you-should-use/default.nix @@ -11,6 +11,7 @@ stdenv.mkDerivation rec { sha256 = "1dz48rd66priqhxx7byndqhbmlwxi1nfw8ik25k0z5k7k754brgy"; }; + strictDeps = true; dontBuild = true; installPhase = '' diff --git a/pkgs/shells/zsh/zsh-z/default.nix b/pkgs/shells/zsh/zsh-z/default.nix index 9623ff6648c..a03b81cb6bf 100644 --- a/pkgs/shells/zsh/zsh-z/default.nix +++ b/pkgs/shells/zsh/zsh-z/default.nix @@ -11,6 +11,7 @@ stdenvNoCC.mkDerivation rec { sha256 = "sha256-HnwUWqzwavh/Qox+siOe5lwTp7PBdiYx+9M0NMNFx00="; }; + strictDeps = true; dontBuild = true; installPhase = '' diff --git a/pkgs/stdenv/generic/make-derivation.nix b/pkgs/stdenv/generic/make-derivation.nix index cfed6d197cf..ed457019c55 100644 --- a/pkgs/stdenv/generic/make-derivation.nix +++ b/pkgs/stdenv/generic/make-derivation.nix @@ -331,8 +331,8 @@ else let # This parameter is sometimes a string, sometimes null, and sometimes a list, yuck configureFlags = let inherit (lib) optional elem; in - (/**/ if lib.isString configureFlags then [configureFlags] - else if configureFlags == null then [] + (/**/ if lib.isString configureFlags then lib.warn "String 'configureFlags' is deprecated and will be removed in release 23.05. Please use a list of strings. Derivation name: ${derivationArg.name}, file: ${pos.file or "unknown file"}" [configureFlags] + else if configureFlags == null then lib.warn "Null 'configureFlags' is deprecated and will be removed in release 23.05. Please use a empty list instead '[]'. Derivation name: ${derivationArg.name}, file: ${pos.file or "unknown file"}" [] else configureFlags) ++ optional (elem "build" configurePlatforms) "--build=${stdenv.buildPlatform.config}" ++ optional (elem "host" configurePlatforms) "--host=${stdenv.hostPlatform.config}" diff --git a/pkgs/tools/X11/xpra/default.nix b/pkgs/tools/X11/xpra/default.nix index 656b9ee6006..69f7dcb469a 100644 --- a/pkgs/tools/X11/xpra/default.nix +++ b/pkgs/tools/X11/xpra/default.nix @@ -1,13 +1,40 @@ { lib , fetchurl -, substituteAll, python3, pkg-config, runCommand, writeText -, xorg, gtk3, glib, pango, cairo, gdk-pixbuf, atk, pandoc -, wrapGAppsHook, xorgserver, getopt, xauth, util-linux, which -, ffmpeg, x264, libvpx, libwebp, x265, librsvg +, substituteAll +, pkg-config +, runCommand +, writeText +, wrapGAppsHook +, withNvenc ? false +, atk +, cairo +, cudatoolkit +, ffmpeg +, gdk-pixbuf +, getopt +, glib +, gobject-introspection +, gst_all_1 +, gtk3 , libfakeXinerama -, gst_all_1, pulseaudio, gobject-introspection -, withNvenc ? false, cudatoolkit, nv-codec-headers-10, nvidia_x11 ? null -, pam }: +, librsvg +, libvpx +, libwebp +, nv-codec-headers-10 +, nvidia_x11 ? null +, pam +, pandoc +, pango +, pulseaudio +, python3 +, util-linux +, which +, x264 +, x265 +, xauth +, xorg +, xorgserver +}: with lib; @@ -43,11 +70,11 @@ let ''; in buildPythonApplication rec { pname = "xpra"; - version = "4.3.2"; + version = "4.3.3"; src = fetchurl { url = "https://xpra.org/src/${pname}-${version}.tar.xz"; - hash = "sha256-CIHVpxZ2qC7Ct5Kmc6dxEzxH9s+63/sI07f9SbCh4a4="; + hash = "sha256-J6zzkho0A1faCVzS/0wDlbgLtJmyPrnBkEcR7kDld7A="; }; patches = [ @@ -56,41 +83,81 @@ in buildPythonApplication rec { inherit libfakeXinerama; }) ./fix-41106.patch # https://github.com/NixOS/nixpkgs/issues/41106 + ./fix-122159.patch # https://github.com/NixOS/nixpkgs/issues/122159 ]; INCLUDE_DIRS = "${pam}/include"; - nativeBuildInputs = [ pkg-config wrapGAppsHook pandoc ] - ++ lib.optional withNvenc cudatoolkit; + nativeBuildInputs = [ + pkg-config + wrapGAppsHook + pandoc + ] ++ lib.optional withNvenc cudatoolkit; + buildInputs = with xorg; [ - libX11 xorgproto libXrender libXi libXres - libXtst libXfixes libXcomposite libXdamage - libXrandr libxkbfile - ] ++ [ + libX11 + libXcomposite + libXdamage + libXfixes + libXi + libxkbfile + libXrandr + libXrender + libXres + libXtst + xorgproto + ] ++ (with gst_all_1; [ + gst-libav + gst-plugins-bad + gst-plugins-base + gst-plugins-good + gstreamer + ]) ++ [ + atk.out + cairo cython + ffmpeg + gdk-pixbuf + glib + gobject-introspection + gtk3 librsvg - - pango cairo gdk-pixbuf atk.out gtk3 glib - - ffmpeg libvpx x264 libwebp x265 - - gst_all_1.gstreamer - gst_all_1.gst-plugins-base - gst_all_1.gst-plugins-good - gst_all_1.gst-plugins-bad - gst_all_1.gst-libav - + libvpx + libwebp pam - gobject-introspection + pango + x264 + x265 ] ++ lib.optional withNvenc nvencHeaders; - propagatedBuildInputs = with python3.pkgs; [ - pillow rencode pycrypto cryptography pycups lz4 dbus-python - netifaces numpy pygobject3 pycairo gst-python pam - pyopengl paramiko opencv4 python-uinput pyxdg - ipaddress idna pyinotify - ] ++ lib.optionals withNvenc (with python3.pkgs; [pynvml pycuda]); - - # error: 'import_cairo' defined but not used + + propagatedBuildInputs = with python3.pkgs; ([ + cryptography + dbus-python + gst-python + idna + ipaddress + lz4 + netifaces + numpy + opencv4 + pam + paramiko + pillow + pycairo + pycrypto + pycups + pygobject3 + pyinotify + pyopengl + python-uinput + pyxdg + rencode + ] ++ lib.optionals withNvenc [ + pycuda + pynvml + ]); + + # error: 'import_cairo' defined but not used NIX_CFLAGS_COMPILE = "-Wno-error=unused-function"; setupPyBuildFlags = [ @@ -104,12 +171,14 @@ in buildPythonApplication rec { ] ++ lib.optional withNvenc "--with-nvenc"; dontWrapGApps = true; + preFixup = '' makeWrapperArgs+=( "''${gappsWrapperArgs[@]}" --set XPRA_INSTALL_PREFIX "$out" --set XPRA_COMMAND "$out/bin/xpra" --set XPRA_XKB_CONFIG_ROOT "${xorg.xkeyboardconfig}/share/X11/xkb" + --set XORG_CONFIG_PREFIX "" --prefix LD_LIBRARY_PATH : ${libfakeXinerama}/lib --prefix PATH : ${lib.makeBinPath [ getopt xorgserver xauth which util-linux pulseaudio ]} '' + lib.optionalString withNvenc '' diff --git a/pkgs/tools/X11/xpra/fix-122159.patch b/pkgs/tools/X11/xpra/fix-122159.patch new file mode 100644 index 00000000000..fecc7e8130d --- /dev/null +++ b/pkgs/tools/X11/xpra/fix-122159.patch @@ -0,0 +1,16 @@ +diff --git a/xpra/scripts/main.py b/xpra/scripts/main.py +index 6def9e0ad..031f8aba9 100755 +--- a/xpra/scripts/main.py ++++ b/xpra/scripts/main.py +@@ -364,11 +364,7 @@ def run_mode(script_file, cmdline, error_cb, options, args, mode, defaults): + "shadow", + ) and not display_is_remote: + if use_systemd_run(options.systemd_run): +- #make sure we run via the same interpreter, +- #inject it into the command line if we have to: + argv = list(cmdline) +- if argv[0].find("python")<0: +- argv.insert(0, "python%i.%i" % (sys.version_info.major, sys.version_info.minor)) + return systemd_run_wrap(mode, argv, options.systemd_run_args) + configure_env(options.env) + configure_logging(options, mode) diff --git a/pkgs/tools/admin/adtool/default.nix b/pkgs/tools/admin/adtool/default.nix index d7f6ffadaca..f1bc5851c79 100644 --- a/pkgs/tools/admin/adtool/default.nix +++ b/pkgs/tools/admin/adtool/default.nix @@ -19,6 +19,12 @@ stdenv.mkDerivation rec { buildInputs = [ openldap ]; + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: ../../src/lib/libactive_directory.a(active_directory.o):/build/adtool-1.3.3/src/lib/active_directory.h:31: + # multiple definition of `system_config_file'; adtool.o:/build/adtool-1.3.3/src/tools/../../src/lib/active_directory.h:31: first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + enableParallelBuilding = true; postInstall = '' diff --git a/pkgs/tools/admin/docker-credential-gcr/default.nix b/pkgs/tools/admin/docker-credential-gcr/default.nix index ee2efb206af..c13c62c62cd 100644 --- a/pkgs/tools/admin/docker-credential-gcr/default.nix +++ b/pkgs/tools/admin/docker-credential-gcr/default.nix @@ -1,16 +1,31 @@ -{ lib, buildGoPackage, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub, testers, docker-credential-gcr }: -buildGoPackage rec { +buildGoModule rec { pname = "docker-credential-gcr"; - version = "2.0.5"; - - goPackagePath = "github.com/GoogleCloudPlatform/docker-credential-gcr"; + version = "2.1.2"; src = fetchFromGitHub { owner = "GoogleCloudPlatform"; repo = "docker-credential-gcr"; rev = "v${version}"; - sha256 = "sha256-WrcGTXy5SMWDHJWddXUuvUvEWjOsJcoB1zBg02p5ggY="; + sha256 = "sha256-gb9c8qTHQWUOlaXAKfpwm0Pwa/N4iu48jWIwPYXD00k="; + }; + + vendorSha256 = "sha256-e7XNTizZYp/tS7KRvB9KxY3Yurphnm6Ehz4dHZNReK8="; + + CGO_ENABLED = 0; + + ldflags = [ + "-s" + "-w" + "-X github.com/GoogleCloudPlatform/docker-credential-gcr/config.Version=${version}" + ]; + + checkFlags = [ "-short" ]; + + passthru.tests.version = testers.testVersion { + package = docker-credential-gcr; + command = "docker-credential-gcr version"; }; meta = with lib; { diff --git a/pkgs/tools/admin/docker-credential-helpers/default.nix b/pkgs/tools/admin/docker-credential-helpers/default.nix index 0d46eff98b5..c32c8834f8d 100644 --- a/pkgs/tools/admin/docker-credential-helpers/default.nix +++ b/pkgs/tools/admin/docker-credential-helpers/default.nix @@ -45,5 +45,7 @@ buildGoPackage rec { license = licenses.mit; maintainers = [ maintainers.marsam ]; platforms = platforms.linux ++ platforms.darwin; + } // lib.optionalAttrs stdenv.isDarwin { + mainProgram = "docker-credential-osxkeychain"; }; } diff --git a/pkgs/tools/admin/eksctl/default.nix b/pkgs/tools/admin/eksctl/default.nix index de923d1f311..cbc2f4c900f 100644 --- a/pkgs/tools/admin/eksctl/default.nix +++ b/pkgs/tools/admin/eksctl/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "eksctl"; - version = "0.96.0"; + version = "0.98.0"; src = fetchFromGitHub { owner = "weaveworks"; repo = pname; rev = version; - sha256 = "sha256-AmwkWFhoGRBWrEhRlTRLGRu79ayWceszZi2hgx388Eg="; + sha256 = "sha256-9X7rk8+OSBZME9MsKQiTUVws+QaNSXZrVsZSXTSh4+I="; }; - vendorSha256 = "sha256-akFclhx6c18u3z2oa6EvLd2NwkVCgJrYWv8Vbp1hZ9g="; + vendorSha256 = "sha256-YdXgfwQaYu/0V/ZO9lfusDdZBh1h26+DsA1HUODsKzU="; doCheck = false; diff --git a/pkgs/tools/admin/stripe-cli/default.nix b/pkgs/tools/admin/stripe-cli/default.nix index a02e34df631..2d294d7f88e 100644 --- a/pkgs/tools/admin/stripe-cli/default.nix +++ b/pkgs/tools/admin/stripe-cli/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "stripe-cli"; - version = "1.8.8"; + version = "1.8.11"; src = fetchFromGitHub { owner = "stripe"; repo = pname; rev = "v${version}"; - sha256 = "sha256-frVQ2nqOflY26ZZWVYJGMNMOdbLuIojQDu/79kLilBk="; + sha256 = "sha256-4a5GPB6R3jTzcZRMrYwDn6oNEHBdKQJUFQb+k76X5Z4="; }; vendorSha256 = "sha256-1c+YtfRy1ey0z117YHHkrCnpb7g+DmM+LR1rjn1YwMQ="; diff --git a/pkgs/tools/admin/syft/default.nix b/pkgs/tools/admin/syft/default.nix index 0f7d3806182..bfeb0ecb8a6 100644 --- a/pkgs/tools/admin/syft/default.nix +++ b/pkgs/tools/admin/syft/default.nix @@ -1,14 +1,14 @@ -{ lib, buildGoModule, fetchFromGitHub, installShellFiles }: +{ lib, stdenv, buildGoModule, fetchFromGitHub, installShellFiles }: buildGoModule rec { pname = "syft"; - version = "0.45.1"; + version = "0.46.1"; src = fetchFromGitHub { owner = "anchore"; repo = pname; rev = "v${version}"; - sha256 = "sha256-oexsu52x9rAqwTVxTVHzKPuaIfvg5lvvuBmKcnb2Yew="; + sha256 = "sha256-ojjudnS0yJZ6YoHmq4m0YKyCqq9Ge+AFU7ejlPop71w="; # populate values that require us to use git. By doing this in postFetch we # can delete .git afterwards and maintain better reproducibility of the src. leaveDotGit = true; @@ -20,11 +20,11 @@ buildGoModule rec { find "$out" -name .git -print0 | xargs -0 rm -rf ''; }; - vendorSha256 = "sha256-d6ZBWX4/lgh610fBLTE1EUqZmpctLfxi2PSRifH+1jg="; + vendorSha256 = "sha256-nb7QcdmwAfYDTzCFNjs7uKwK/gng2iMD36ANaFSsftk="; nativeBuildInputs = [ installShellFiles ]; - subPackages = [ "." ]; + subPackages = [ "cmd/syft" ]; ldflags = [ "-s" @@ -52,6 +52,17 @@ buildGoModule rec { --zsh <($out/bin/syft completion zsh) ''; + doInstallCheck = true; + installCheckPhase = '' + runHook preInstallCheck + + export SYFT_CHECK_FOR_APP_UPDATE=false + $out/bin/syft --help + $out/bin/syft version | grep "${version}" + + runHook postInstallCheck + ''; + meta = with lib; { homepage = "https://github.com/anchore/syft"; changelog = "https://github.com/anchore/syft/releases/tag/v${version}"; @@ -63,5 +74,8 @@ buildGoModule rec { ''; license = with licenses; [ asl20 ]; maintainers = with maintainers; [ jk ]; + # Need updated macOS SDK + # https://github.com/NixOS/nixpkgs/issues/101229 + broken = (stdenv.isDarwin && stdenv.isx86_64); }; } diff --git a/pkgs/tools/admin/trivy/default.nix b/pkgs/tools/admin/trivy/default.nix index 66b99c79453..f769850224b 100644 --- a/pkgs/tools/admin/trivy/default.nix +++ b/pkgs/tools/admin/trivy/default.nix @@ -1,23 +1,28 @@ { lib +, stdenv , buildGoModule , fetchFromGitHub +, CoreFoundation +, Security }: buildGoModule rec { pname = "trivy"; - version = "0.27.1"; + version = "0.28.0"; src = fetchFromGitHub { owner = "aquasecurity"; repo = pname; rev = "v${version}"; - sha256 = "sha256-eyvxBpGuOXicuqINYhl4/fUgN/j+Awe5vgMaMxtAMr0="; + sha256 = "sha256-zyTUGAxUAfrigRNiw03ZXFK+UkpuxwuU2xviZmAPuR8="; }; - - vendorSha256 = "sha256-91tq4ipi3JobVgffASn8KRd3JQkgbOx/7PsjKq5vJdE="; + vendorSha256 = "sha256-dgiKWHSm49/CB4dWrNWIzkkmj6Aw4l+9iLa6xe/umq0="; excludedPackages = "misc"; + buildInputs = lib.optionals (stdenv.isDarwin && stdenv.isx86_64) + [ CoreFoundation Security ]; + ldflags = [ "-s" "-w" diff --git a/pkgs/tools/archivers/arc_unpacker/default.nix b/pkgs/tools/archivers/arc_unpacker/default.nix index 7fbd9302397..561567f8b15 100644 --- a/pkgs/tools/archivers/arc_unpacker/default.nix +++ b/pkgs/tools/archivers/arc_unpacker/default.nix @@ -3,16 +3,13 @@ stdenv.mkDerivation rec { pname = "arc_unpacker"; - version = "unstable-2021-05-17"; + version = "unstable-2021-08-06"; src = fetchFromGitHub { owner = "vn-tools"; repo = "arc_unpacker"; - # Since the latest release (0.11) doesn't build, we've opened an upstream - # issue in https://github.com/vn-tools/arc_unpacker/issues/187 to ask if a - # a new release is upcoming - rev = "9c2781fcf3ead7641e873b65899f6abeeabb2fc8"; - sha256 = "1xxrc9nww0rla3yh10z6glv05ax4rynwwbd0cdvkp7gyqzrv97xp"; + rev = "456834ecf2e5686813802c37efd829310485c57d"; + hash = "sha256-STbdWH7Mr3gpOrZvujblYrIIKEWBHzy1/BaNuh4teI8="; }; nativeBuildInputs = [ cmake makeWrapper catch2 ]; diff --git a/pkgs/tools/audio/beets/badfiles-plugin-nix-paths.patch b/pkgs/tools/audio/beets/badfiles-plugin-nix-paths.patch deleted file mode 100644 index 6956183344c..00000000000 --- a/pkgs/tools/audio/beets/badfiles-plugin-nix-paths.patch +++ /dev/null @@ -1,21 +0,0 @@ -diff --git i/beetsplug/badfiles.py w/beetsplug/badfiles.py -index 36b45de3..5208b696 100644 ---- i/beetsplug/badfiles.py -+++ w/beetsplug/badfiles.py -@@ -71,14 +71,14 @@ class BadFiles(BeetsPlugin): - return status, errors, [line for line in output.split("\n") if line] - - def check_mp3val(self, path): -- status, errors, output = self.run_command(["mp3val", path]) -+ status, errors, output = self.run_command(["@mp3val@/bin/mp3val", path]) - if status == 0: - output = [line for line in output if line.startswith("WARNING:")] - errors = len(output) - return status, errors, output - - def check_flac(self, path): -- return self.run_command(["flac", "-wst", path]) -+ return self.run_command(["@flac@/bin/flac", "-wst", path]) - - def check_custom(self, command): - def checker(path): diff --git a/pkgs/tools/audio/beets/builtin-plugins.nix b/pkgs/tools/audio/beets/builtin-plugins.nix new file mode 100644 index 00000000000..1fef39ef72f --- /dev/null +++ b/pkgs/tools/audio/beets/builtin-plugins.nix @@ -0,0 +1,95 @@ +{ stdenv +, aacgain +, essentia-extractor +, ffmpeg +, flac +, imagemagick +, keyfinder-cli +, lib +, mp3gain +, mp3val +, python3Packages +, ... +}: { + absubmit = { + enable = lib.elem stdenv.hostPlatform.system essentia-extractor.meta.platforms; + wrapperBins = [ essentia-extractor ]; + }; + acousticbrainz.propagatedBuildInputs = [ python3Packages.requests ]; + albumtypes = { }; + aura.propagatedBuildInputs = with python3Packages; [ flask pillow ]; + badfiles.wrapperBins = [ mp3val flac ]; + bareasc = { }; + beatport.propagatedBuildInputs = [ python3Packages.requests-oauthlib ]; + bench = { }; + bpd = { }; + bpm = { }; + bpsync = { }; + bucket = { }; + chroma.propagatedBuildInputs = [ python3Packages.pyacoustid ]; + convert.wrapperBins = [ ffmpeg ]; + deezer.propagatedBuildInputs = [ python3Packages.requests ]; + discogs.propagatedBuildInputs = with python3Packages; [ discogs-client requests ]; + duplicates = { }; + edit = { }; + embedart = { + propagatedBuildInputs = with python3Packages; [ pillow ]; + wrapperBins = [ imagemagick ]; + }; + embyupdate.propagatedBuildInputs = [ python3Packages.requests ]; + export = { }; + fetchart = { + propagatedBuildInputs = with python3Packages; [ requests pillow ]; + wrapperBins = [ imagemagick ]; + }; + filefilter = { }; + fish = { }; + freedesktop = { }; + fromfilename = { }; + ftintitle = { }; + fuzzy = { }; + gmusic = { }; + hook = { }; + ihate = { }; + importadded = { }; + importfeeds = { }; + info = { }; + inline = { }; + ipfs = { }; + keyfinder.wrapperBins = [ keyfinder-cli ]; + kodiupdate.propagatedBuildInputs = [ python3Packages.requests ]; + lastgenre.propagatedBuildInputs = [ python3Packages.pylast ]; + lastimport.propagatedBuildInputs = [ python3Packages.pylast ]; + loadext.propagatedBuildInputs = [ python3Packages.requests ]; + lyrics.propagatedBuildInputs = [ python3Packages.beautifulsoup4 ]; + mbcollection = { }; + mbsubmit = { }; + mbsync = { }; + metasync = { }; + missing = { }; + mpdstats.propagatedBuildInputs = [ python3Packages.mpd2 ]; + mpdupdate.propagatedBuildInputs = [ python3Packages.mpd2 ]; + parentwork = { }; + permissions = { }; + play = { }; + playlist.propagatedBuildInputs = [ python3Packages.requests ]; + plexupdate = { }; + random = { }; + replaygain.wrapperBins = [ aacgain ffmpeg mp3gain ]; + rewrite = { }; + scrub = { }; + smartplaylist = { }; + sonosupdate.propagatedBuildInputs = [ python3Packages.soco ]; + spotify = { }; + subsonicplaylist.propagatedBuildInputs = [ python3Packages.requests ]; + subsonicupdate.propagatedBuildInputs = [ python3Packages.requests ]; + the = { }; + thumbnails = { + propagatedBuildInputs = with python3Packages; [ pillow pyxdg ]; + wrapperBins = [ imagemagick ]; + }; + types.testPaths = [ "test/test_types_plugin.py" ]; + unimported = { }; + web.propagatedBuildInputs = [ python3Packages.flask ]; + zero = { }; +} diff --git a/pkgs/tools/audio/beets/common.nix b/pkgs/tools/audio/beets/common.nix new file mode 100644 index 00000000000..d5883f3cdbd --- /dev/null +++ b/pkgs/tools/audio/beets/common.nix @@ -0,0 +1,147 @@ +{ stdenv +, bashInteractive +, diffPlugins +, glibcLocales +, gobject-introspection +, gst_all_1 +, lib +, python3Packages +, runtimeShell +, writeScript + + # plugin deps +, aacgain +, essentia-extractor +, ffmpeg +, flac +, imagemagick +, keyfinder-cli +, mp3gain +, mp3val + +, src +, version +, pluginOverrides ? { } +, disableAllPlugins ? false +}@inputs: +let + inherit (lib) attrNames attrValues concatMap; + + builtinPlugins = import ./builtin-plugins.nix inputs; + + mkPlugin = { enable ? !disableAllPlugins, propagatedBuildInputs ? [ ], testPaths ? [ ], wrapperBins ? [ ] }: { + inherit enable propagatedBuildInputs testPaths wrapperBins; + }; + + allPlugins = lib.mapAttrs (_: mkPlugin) (lib.recursiveUpdate builtinPlugins pluginOverrides); + enabledPlugins = lib.filterAttrs (_: p: p.enable) allPlugins; + disabledPlugins = lib.filterAttrs (_: p: !p.enable) allPlugins; + + pluginWrapperBins = concatMap (p: p.wrapperBins) (attrValues enabledPlugins); +in +python3Packages.buildPythonApplication rec { + pname = "beets"; + inherit src version; + + patches = [ + # Bash completion fix for Nix + ./patches/bash-completion-always-print.patch + ]; + + propagatedBuildInputs = with python3Packages; [ + confuse + gobject-introspection + gst-python + jellyfish + mediafile + munkres + musicbrainzngs + mutagen + pygobject3 + pyyaml + reflink + unidecode + ] ++ (concatMap (p: p.propagatedBuildInputs) (attrValues enabledPlugins)); + + buildInputs = [ + ] ++ (with gst_all_1; [ + gst-plugins-base + gst-plugins-good + gst-plugins-ugly + ]); + + postInstall = '' + mkdir -p $out/share/zsh/site-functions + cp extra/_beet $out/share/zsh/site-functions/ + ''; + + doInstallCheck = true; + + installCheckPhase = '' + runHook preInstallCheck + + tmphome="$(mktemp -d)" + + EDITOR="${writeScript "beetconfig.sh" '' + #!${runtimeShell} + cat > "$1" <<CFG + plugins: ${lib.concatStringsSep " " (attrNames enabledPlugins)} + CFG + ''}" HOME="$tmphome" "$out/bin/beet" config -e + EDITOR=true HOME="$tmphome" "$out/bin/beet" config -e + + runHook postInstallCheck + ''; + + makeWrapperArgs = [ + "--set GI_TYPELIB_PATH \"$GI_TYPELIB_PATH\"" + "--set GST_PLUGIN_SYSTEM_PATH_1_0 \"$GST_PLUGIN_SYSTEM_PATH_1_0\"" + "--prefix PATH : ${lib.makeBinPath pluginWrapperBins}" + ]; + + checkInputs = with python3Packages; [ + pytest + mock + rarfile + responses + ] ++ pluginWrapperBins; + + disabledTestPaths = lib.flatten (attrValues (lib.mapAttrs (n: v: v.testPaths ++ [ "test/test_${n}.py" ]) disabledPlugins)); + + checkPhase = '' + runHook preCheck + + # Check for undefined plugins + find beetsplug -mindepth 1 \ + \! -path 'beetsplug/__init__.py' -a \ + \( -name '*.py' -o -path 'beetsplug/*/__init__.py' \) -print \ + | sed -n -re 's|^beetsplug/([^/.]+).*|\1|p' \ + | sort -u > plugins_available + ${diffPlugins (attrNames allPlugins) "plugins_available"} + + export BEETS_TEST_SHELL="${bashInteractive}/bin/bash --norc" + export HOME="$(mktemp -d)" + + args=" -m pytest -r fEs" + eval "disabledTestPaths=($disabledTestPaths)" + for path in ''${disabledTestPaths[@]}; do + if [ -e "$path" ]; then + args+=" --ignore $path" + else + echo "Skipping non-existent test path '$path'" + fi + done + + python $args + + runHook postCheck + ''; + + meta = with lib; { + description = "Music tagger and library organizer"; + homepage = "https://beets.io"; + license = licenses.mit; + maintainers = with maintainers; [ aszlig doronbehar lovesegfault pjones ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/tools/audio/beets/convert-plugin-ffmpeg-path.patch b/pkgs/tools/audio/beets/convert-plugin-ffmpeg-path.patch deleted file mode 100644 index 1bc17893448..00000000000 --- a/pkgs/tools/audio/beets/convert-plugin-ffmpeg-path.patch +++ /dev/null @@ -1,34 +0,0 @@ -diff --git i/beetsplug/convert.py w/beetsplug/convert.py -index 6bc07c28..039fb452 100644 ---- i/beetsplug/convert.py -+++ w/beetsplug/convert.py -@@ -118,22 +118,22 @@ class ConvertPlugin(BeetsPlugin): - 'id3v23': 'inherit', - 'formats': { - 'aac': { -- 'command': 'ffmpeg -i $source -y -vn -acodec aac ' -+ 'command': '@ffmpeg@/bin/ffmpeg -i $source -y -vn -acodec aac ' - '-aq 1 $dest', - 'extension': 'm4a', - }, - 'alac': { -- 'command': 'ffmpeg -i $source -y -vn -acodec alac $dest', -+ 'command': '@ffmpeg@/bin/ffmpeg -i $source -y -vn -acodec alac $dest', - 'extension': 'm4a', - }, -- 'flac': 'ffmpeg -i $source -y -vn -acodec flac $dest', -- 'mp3': 'ffmpeg -i $source -y -vn -aq 2 $dest', -+ 'flac': '@ffmpeg@/bin/ffmpeg -i $source -y -vn -acodec flac $dest', -+ 'mp3': '@ffmpeg@/bin/ffmpeg -i $source -y -vn -aq 2 $dest', - 'opus': -- 'ffmpeg -i $source -y -vn -acodec libopus -ab 96k $dest', -+ '@ffmpeg@/bin/ffmpeg -i $source -y -vn -acodec libopus -ab 96k $dest', - 'ogg': -- 'ffmpeg -i $source -y -vn -acodec libvorbis -aq 3 $dest', -+ '@ffmpeg@/bin/ffmpeg -i $source -y -vn -acodec libvorbis -aq 3 $dest', - 'wma': -- 'ffmpeg -i $source -y -vn -acodec wmav2 -vn $dest', -+ '@ffmpeg@/bin/ffmpeg -i $source -y -vn -acodec wmav2 -vn $dest', - }, - 'max_bitrate': 500, - 'auto': False, diff --git a/pkgs/tools/audio/beets/default.nix b/pkgs/tools/audio/beets/default.nix index 0bdbe9d345d..a66b018678c 100644 --- a/pkgs/tools/audio/beets/default.nix +++ b/pkgs/tools/audio/beets/default.nix @@ -1,279 +1,50 @@ -{ stdenv -, lib +{ lib +, callPackage , fetchFromGitHub -, writeScript -, glibcLocales -, diffPlugins -, substituteAll -, pythonPackages -# can be null, if you wish to disable a reference to it. It's needed for the -# artresizer, see: -# https://beets.readthedocs.io/en/v1.6.0/plugins/fetchart.html#image-resizing -, imagemagick -, gobject-introspection -, gst_all_1 -, runtimeShell - -# external plugins package set -, beetsExternalPlugins - -, enableAbsubmit ? lib.elem stdenv.hostPlatform.system essentia-extractor.meta.platforms, essentia-extractor -, enableAcousticbrainz ? true -, enableAcoustid ? true -, enableAura ? true -, enableBadfiles ? true, flac, mp3val -, enableBeatport ? true -, enableBpsync ? true -, enableConvert ? true, ffmpeg -, enableDeezer ? true -, enableDiscogs ? true -, enableEmbyupdate ? true -, enableFetchart ? true -, enableKeyfinder ? true, keyfinder-cli -, enableKodiupdate ? true -, enableLastfm ? true -, enableLoadext ? true -, enableLyrics ? true -, enableMpd ? true -, enablePlaylist ? true -, enableReplaygain ? true -, enableSonosUpdate ? true -, enableSubsonicplaylist ? true -, enableSubsonicupdate ? true -, enableThumbnails ? true -, enableWeb ? true - -# External plugins -, enableAlternatives ? false -, enableCopyArtifacts ? false -, enableExtraFiles ? false - -, bashInteractive, bash-completion }: - -assert enableBpsync -> enableBeatport; - -let - optionalPlugins = { - absubmit = enableAbsubmit; - acousticbrainz = enableAcousticbrainz; - aura = enableAura; - badfiles = enableBadfiles; - beatport = enableBeatport; - bpsync = enableBpsync; - chroma = enableAcoustid; - convert = enableConvert; - deezer = enableDeezer; - discogs = enableDiscogs; - embyupdate = enableEmbyupdate; - fetchart = enableFetchart; - keyfinder = enableKeyfinder; - kodiupdate = enableKodiupdate; - lastgenre = enableLastfm; - lastimport = enableLastfm; - loadext = enableLoadext; - lyrics = enableLyrics; - mpdstats = enableMpd; - mpdupdate = enableMpd; - playlist = enablePlaylist; - replaygain = enableReplaygain; - sonosupdate = enableSonosUpdate; - subsonicplaylist = enableSubsonicplaylist; - subsonicupdate = enableSubsonicupdate; - thumbnails = enableThumbnails; - web = enableWeb; +/* +** To customize the enabled beets plugins, use the pluginOverrides input to the +** derivation. +** Examples: +** +** Disabling a builtin plugin: +** beets.override { pluginOverrides = { beatport.enable = false; }; } +** +** Enabling an external plugin: +** beets.override { pluginOverrides = { +** alternatives = { enable = true; propagatedBuildInputs = [ beetsPackages.alternatives ]; }; +** }; } +*/ +lib.makeExtensible (self: { + beets = self.beets-stable; + + beets-stable = callPackage ./common.nix rec { + version = "1.6.0"; + src = fetchFromGitHub { + owner = "beetbox"; + repo = "beets"; + rev = "v${version}"; + hash = "sha256-fT+rCJJQR7bdfAcmeFRaknmh4ZOP4RCx8MXpq7/D8tM="; + }; }; - pluginsWithoutDeps = [ - "albumtypes" "bareasc" "bench" "bpd" "bpm" "bucket" "duplicates" "edit" "embedart" - "export" "filefilter" "fish" "freedesktop" "fromfilename" "ftintitle" "fuzzy" - "hook" "ihate" "importadded" "importfeeds" "info" "inline" "ipfs" "gmusic" - "mbcollection" "mbsubmit" "mbsync" "metasync" "missing" "parentwork" "permissions" "play" - "plexupdate" "random" "rewrite" "scrub" "smartplaylist" "spotify" "the" - "types" "unimported" "zero" - ]; - - enabledOptionalPlugins = lib.attrNames (lib.filterAttrs (_: lib.id) optionalPlugins); - - allPlugins = pluginsWithoutDeps ++ lib.attrNames optionalPlugins; - allEnabledPlugins = pluginsWithoutDeps ++ enabledOptionalPlugins; - - testShell = "${bashInteractive}/bin/bash --norc"; - completion = "${bash-completion}/share/bash-completion/bash_completion"; - -in pythonPackages.buildPythonApplication rec { - pname = "beets"; - version = "1.6.0"; - - src = fetchFromGitHub { - owner = "beetbox"; - repo = "beets"; - rev = "v${version}"; - sha256 = "sha256-fT+rCJJQR7bdfAcmeFRaknmh4ZOP4RCx8MXpq7/D8tM="; + beets-minimal = self.beets.override { disableAllPlugins = true; }; + + beets-unstable = callPackage ./common.nix { + version = "unstable-2022-05-08"; + src = fetchFromGitHub { + owner = "beetbox"; + repo = "beets"; + rev = "e06cf7969bfdfa4773049699320471be45d56054"; + hash = "sha256-yWwxYSzSSmx2UfCn0EBH23hQGZKSRn/c8ryvxLUeHdM="; + }; + pluginOverrides = { + # unstable has a new plugin, so we register it here. + limit = { }; + }; }; - propagatedBuildInputs = [ - pythonPackages.six - pythonPackages.enum34 - pythonPackages.jellyfish - pythonPackages.munkres - pythonPackages.musicbrainzngs - pythonPackages.mutagen - pythonPackages.pyyaml - pythonPackages.unidecode - pythonPackages.gst-python - pythonPackages.pygobject3 - pythonPackages.reflink - pythonPackages.confuse - pythonPackages.mediafile - gobject-introspection - ] ++ lib.optional enableAbsubmit essentia-extractor - ++ lib.optional enableAcoustid pythonPackages.pyacoustid - ++ lib.optional enableBeatport pythonPackages.requests-oauthlib - ++ lib.optional enableConvert ffmpeg - ++ lib.optional enableDiscogs pythonPackages.discogs-client - ++ lib.optional (enableFetchart - || enableDeezer - || enableEmbyupdate - || enableKodiupdate - || enableLoadext - || enablePlaylist - || enableSubsonicplaylist - || enableSubsonicupdate - || enableAcousticbrainz) pythonPackages.requests - ++ lib.optional enableKeyfinder keyfinder-cli - ++ lib.optional enableLastfm pythonPackages.pylast - ++ lib.optional enableLyrics pythonPackages.beautifulsoup4 - ++ lib.optional enableMpd pythonPackages.mpd2 - ++ lib.optional enableSonosUpdate pythonPackages.soco - ++ lib.optional enableThumbnails pythonPackages.pyxdg - ++ lib.optional (enableAura - || enableWeb) pythonPackages.flask - ++ lib.optional enableAlternatives beetsExternalPlugins.alternatives - ++ lib.optional enableCopyArtifacts beetsExternalPlugins.copyartifacts - ++ lib.optional enableExtraFiles beetsExternalPlugins.extrafiles - ; - - buildInputs = [ - ] ++ (with gst_all_1; [ - gst-plugins-base - gst-plugins-good - gst-plugins-ugly - ]); - - checkInputs = with pythonPackages; [ - beautifulsoup4 - mock - nose - rarfile - responses - # Although considered as plugin dependencies, they are needed for the - # tests, for disabling them via an override makes the build fail. see: - # https://github.com/beetbox/beets/blob/v1.6.0/setup.py - pylast - mpd2 - discogs-client - pyxdg - ]; - - patches = [ - # Bash completion fix for Nix - ./bash-completion-always-print.patch - ] - # Fix path to imagemagick, used for the artresizer.py file. This reference - # to imagemagick might be expensive for some people, so the patch can be - # disabled if imagemagick is set to null - ++ lib.optional (imagemagick != null) (substituteAll { - src = ./imagemagick-nix-path.patch; - inherit imagemagick; - }) - # We need to force ffmpeg as the default, since we do not package - # bs1770gain, and set the absolute path there, to avoid impurities. - ++ lib.optional enableReplaygain (substituteAll { - src = ./replaygain-default-ffmpeg.patch; - ffmpeg = lib.getBin ffmpeg; - }) - # Put absolute Nix paths in place - ++ lib.optional enableConvert (substituteAll { - src = ./convert-plugin-ffmpeg-path.patch; - ffmpeg = lib.getBin ffmpeg; - }) - ++ lib.optional enableBadfiles (substituteAll { - src = ./badfiles-plugin-nix-paths.patch; - inherit mp3val flac; - }) - ; - - # Disable failing tests - postPatch = '' - echo echo completion tests passed > test/rsrc/test_completion.sh - - # https://github.com/beetbox/beets/issues/1187 - sed -i -e 's/len(mf.images)/0/' test/test_zero.py - ''; - - postInstall = '' - mkdir -p $out/share/zsh/site-functions - cp extra/_beet $out/share/zsh/site-functions/ - ''; - - doCheck = true; - - preCheck = '' - find beetsplug -mindepth 1 \ - \! -path 'beetsplug/__init__.py' -a \ - \( -name '*.py' -o -path 'beetsplug/*/__init__.py' \) -print \ - | sed -n -re 's|^beetsplug/([^/.]+).*|\1|p' \ - | sort -u > plugins_available - - ${diffPlugins allPlugins "plugins_available"} - ''; - - checkPhase = '' - runHook preCheck - - LANG=en_US.UTF-8 \ - LOCALE_ARCHIVE=${assert stdenv.isLinux; glibcLocales}/lib/locale/locale-archive \ - BEETS_TEST_SHELL="${testShell}" \ - BASH_COMPLETION_SCRIPT="${completion}" \ - HOME="$(mktemp -d)" nosetests -v - - runHook postCheck - ''; - - doInstallCheck = true; - - installCheckPhase = '' - runHook preInstallCheck - - tmphome="$(mktemp -d)" - - EDITOR="${writeScript "beetconfig.sh" '' - #!${runtimeShell} - cat > "$1" <<CFG - plugins: ${lib.concatStringsSep " " allEnabledPlugins} - CFG - ''}" HOME="$tmphome" "$out/bin/beet" config -e - EDITOR=true HOME="$tmphome" "$out/bin/beet" config -e - - runHook postInstallCheck - ''; - - makeWrapperArgs = [ - "--set GI_TYPELIB_PATH \"$GI_TYPELIB_PATH\"" - "--set GST_PLUGIN_SYSTEM_PATH_1_0 \"$GST_PLUGIN_SYSTEM_PATH_1_0\"" - ]; - - passthru = { - # FIXME: remove in favor of pkgs.beetsExternalPlugins - externalPlugins = beetsExternalPlugins; - }; - - meta = with lib; { - description = "Music tagger and library organizer"; - homepage = "https://beets.io"; - license = licenses.mit; - maintainers = with maintainers; [ aszlig doronbehar lovesegfault pjones ]; - platforms = platforms.linux; - }; -} + alternatives = callPackage ./plugins/alternatives.nix { beets = self.beets-minimal; }; + copyartifacts = callPackage ./plugins/copyartifacts.nix { beets = self.beets-minimal; }; + extrafiles = callPackage ./plugins/extrafiles.nix { beets = self.beets-minimal; }; +}) diff --git a/pkgs/tools/audio/beets/imagemagick-nix-path.patch b/pkgs/tools/audio/beets/imagemagick-nix-path.patch deleted file mode 100644 index 9a77703ede7..00000000000 --- a/pkgs/tools/audio/beets/imagemagick-nix-path.patch +++ /dev/null @@ -1,20 +0,0 @@ -diff --git i/beets/util/artresizer.py w/beets/util/artresizer.py -index 8683e228..2f38b4d6 100644 ---- i/beets/util/artresizer.py -+++ w/beets/util/artresizer.py -@@ -334,13 +334,8 @@ class ArtResizer(metaclass=Shareable): - # not, fall back to the older, separate convert and identify - # commands. - if self.method[0] == IMAGEMAGICK: -- self.im_legacy = self.method[2] -- if self.im_legacy: -- self.im_convert_cmd = ['convert'] -- self.im_identify_cmd = ['identify'] -- else: -- self.im_convert_cmd = ['magick'] -- self.im_identify_cmd = ['magick', 'identify'] -+ self.im_convert_cmd = ['@imagemagick@/bin/magick'] -+ self.im_identify_cmd = ['@imagemagick@/bin/magick', 'identify'] - - def resize( - self, maxwidth, path_in, path_out=None, quality=0, max_filesize=0 diff --git a/pkgs/tools/audio/beets/bash-completion-always-print.patch b/pkgs/tools/audio/beets/patches/bash-completion-always-print.patch index 8a31fe22f72..8a31fe22f72 100644 --- a/pkgs/tools/audio/beets/bash-completion-always-print.patch +++ b/pkgs/tools/audio/beets/patches/bash-completion-always-print.patch diff --git a/pkgs/tools/audio/beets/plugins/alternatives.nix b/pkgs/tools/audio/beets/plugins/alternatives.nix index 146e9f50664..635854d4576 100644 --- a/pkgs/tools/audio/beets/plugins/alternatives.nix +++ b/pkgs/tools/audio/beets/plugins/alternatives.nix @@ -1,6 +1,6 @@ -{ lib, fetchFromGitHub, beets, pythonPackages }: +{ lib, fetchFromGitHub, beets, python3Packages }: -pythonPackages.buildPythonApplication rec { +python3Packages.buildPythonApplication rec { pname = "beets-alternatives"; version = "unstable-2021-02-01"; @@ -18,7 +18,7 @@ pythonPackages.buildPythonApplication rec { nativeBuildInputs = [ beets ]; - checkInputs = with pythonPackages; [ + checkInputs = with python3Packages; [ pytestCheckHook mock ]; diff --git a/pkgs/tools/audio/beets/plugins/copyartifacts.nix b/pkgs/tools/audio/beets/plugins/copyartifacts.nix index 2f1ecdfc369..623ca2fcf17 100644 --- a/pkgs/tools/audio/beets/plugins/copyartifacts.nix +++ b/pkgs/tools/audio/beets/plugins/copyartifacts.nix @@ -1,6 +1,6 @@ -{ lib, fetchFromGitHub, beets, pythonPackages, glibcLocales }: +{ lib, fetchFromGitHub, beets, python3Packages }: -pythonPackages.buildPythonApplication { +python3Packages.buildPythonApplication { pname = "beets-copyartifacts"; version = "unstable-2020-02-15"; @@ -15,20 +15,20 @@ pythonPackages.buildPythonApplication { sed -i -e '/install_requires/,/\]/{/beets/d}' setup.py sed -i -e '/namespace_packages/d' setup.py printf 'from pkgutil import extend_path\n__path__ = extend_path(__path__, __name__)\n' >beetsplug/__init__.py - - # Skip test which is already failing upstream. - sed -i -e '1i import unittest' \ - -e 's/\(^ *\)# failing/\1@unittest.skip/' \ - tests/test_reimport.py ''; - nativeBuildInputs = [ beets pythonPackages.nose glibcLocales ]; + pytestFlagsArray = [ "-r fEs" ]; - checkPhase = "LANG=en_US.UTF-8 nosetests"; + checkInputs = with python3Packages; [ + pytestCheckHook + beets + six + ]; meta = { description = "Beets plugin to move non-music files during the import process"; homepage = "https://github.com/sbarakat/beets-copyartifacts"; license = lib.licenses.mit; + inherit (beets.meta) platforms; }; } diff --git a/pkgs/tools/audio/beets/plugins/extrafiles.nix b/pkgs/tools/audio/beets/plugins/extrafiles.nix index 0d3ccc0d7a7..7cd4c76d504 100644 --- a/pkgs/tools/audio/beets/plugins/extrafiles.nix +++ b/pkgs/tools/audio/beets/plugins/extrafiles.nix @@ -1,6 +1,6 @@ -{ lib, fetchFromGitHub, beets, pythonPackages }: +{ lib, fetchFromGitHub, beets, python3Packages }: -pythonPackages.buildPythonApplication rec { +python3Packages.buildPythonApplication { pname = "beets-extrafiles"; version = "unstable-2020-12-13"; @@ -17,17 +17,21 @@ pythonPackages.buildPythonApplication rec { sed -i -e 's/mediafile~=0.6.0/mediafile>=0.6.0/' setup.py ''; - nativeBuildInputs = [ beets ]; + propagatedBuildInputs = with python3Packages; [ mediafile ]; - propagatedBuildInputs = with pythonPackages; [ mediafile ]; + checkInputs = [ + python3Packages.pytestCheckHook + beets + ]; preCheck = '' - HOME=$TEMPDIR + HOME="$(mktemp -d)" ''; meta = { homepage = "https://github.com/Holzhaus/beets-extrafiles"; description = "A plugin for beets that copies additional files and directories during the import process"; license = lib.licenses.mit; + inherit (beets.meta) platforms; }; } diff --git a/pkgs/tools/audio/beets/replaygain-default-ffmpeg.patch b/pkgs/tools/audio/beets/replaygain-default-ffmpeg.patch deleted file mode 100644 index e441997cae5..00000000000 --- a/pkgs/tools/audio/beets/replaygain-default-ffmpeg.patch +++ /dev/null @@ -1,26 +0,0 @@ -diff --git i/beetsplug/replaygain.py w/beetsplug/replaygain.py -index b6297d93..5c1cbbc0 100644 ---- i/beetsplug/replaygain.py -+++ w/beetsplug/replaygain.py -@@ -139,7 +139,7 @@ class FfmpegBackend(Backend): - - def __init__(self, config, log): - super().__init__(config, log) -- self._ffmpeg_path = "ffmpeg" -+ self._ffmpeg_path = "@ffmpeg@/bin/ffmpeg" - - # check that ffmpeg is installed - try: -@@ -975,11 +975,10 @@ class ReplayGainPlugin(BeetsPlugin): - def __init__(self): - super().__init__() - -- # default backend is 'command' for backward-compatibility. - self.config.add({ - 'overwrite': False, - 'auto': True, -- 'backend': 'command', -+ 'backend': 'ffmpeg', - 'threads': cpu_count(), - 'parallel_on_import': False, - 'per_disc': False, diff --git a/pkgs/tools/audio/dsp/default.nix b/pkgs/tools/audio/dsp/default.nix new file mode 100644 index 00000000000..6891bfc041d --- /dev/null +++ b/pkgs/tools/audio/dsp/default.nix @@ -0,0 +1,52 @@ +{ lib +, stdenv +, fetchFromGitHub +, pkg-config +, fftw +, zita-convolver +, fftwFloat +, libsndfile +, ffmpeg +, alsa-lib +, libao +, libmad +, ladspaH +, libtool +, libpulseaudio +}: + +stdenv.mkDerivation rec { + pname = "dsp"; + version = "1.8"; + + src = fetchFromGitHub { + owner = "bmc0"; + repo = "dsp"; + rev = "v${version}"; + sha256 = "sha256-LTgjpzAGi3oL8l5NcJj1ortKFd3vWDfXHr8YyedAxEE="; + }; + + nativeBuildInputs = [ pkg-config ]; + + buildInputs = [ + fftw + zita-convolver + fftwFloat + libsndfile + ffmpeg + alsa-lib + libao + libmad + ladspaH + libtool + libpulseaudio + ]; + + meta = with lib; { + homepage = "https://github.com/bmc0/dsp"; + description = "An audio processing program with an interactive mode"; + license = licenses.isc; + maintainers = with maintainers; [ aaronjheng ]; + platforms = platforms.linux ++ platforms.darwin; + }; +} diff --git a/pkgs/tools/audio/mpris-scrobbler/default.nix b/pkgs/tools/audio/mpris-scrobbler/default.nix index f2e23fd2f57..16070c91dd9 100644 --- a/pkgs/tools/audio/mpris-scrobbler/default.nix +++ b/pkgs/tools/audio/mpris-scrobbler/default.nix @@ -15,13 +15,13 @@ stdenv.mkDerivation rec { pname = "mpris-scrobbler"; - version = "0.4.90"; + version = "0.4.95"; src = fetchFromGitHub { owner = "mariusor"; repo = "mpris-scrobbler"; rev = "v${version}"; - sha256 = "sha256-+Y5d7yFOnSk2gQS/m/01ofbNeDCLXb+cTTlHj4bgO0M="; + sha256 = "sha256-Cqf0egS4XSDiKLdizNHPdS0Zt3jQxw9e78S7n23CuKI="; }; postPatch = '' diff --git a/pkgs/tools/backup/btar/default.nix b/pkgs/tools/backup/btar/default.nix index c77aa5b82b6..00fee941476 100644 --- a/pkgs/tools/backup/btar/default.nix +++ b/pkgs/tools/backup/btar/default.nix @@ -16,6 +16,12 @@ stdenv.mkDerivation rec { }) ]; + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: listindex.o:/build/btar-1.1.1/loadindex.h:12: multiple definition of + # `ptr'; main.o:/build/btar-1.1.1/loadindex.h:12: first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + buildInputs = [ librsync ]; makeFlags = [ "PREFIX=$(out)" ]; diff --git a/pkgs/tools/backup/diskrsync/default.nix b/pkgs/tools/backup/diskrsync/default.nix index 97870d5dedd..4a5c128d168 100644 --- a/pkgs/tools/backup/diskrsync/default.nix +++ b/pkgs/tools/backup/diskrsync/default.nix @@ -1,18 +1,19 @@ -{ buildGoPackage, fetchFromGitHub, lib, openssh, makeWrapper }: +{ buildGoModule, fetchFromGitHub, lib, openssh, makeWrapper }: -buildGoPackage rec { +buildGoModule rec { pname = "diskrsync"; - version = "unstable-2019-01-02"; + version = "1.3.0"; src = fetchFromGitHub { owner = "dop251"; repo = pname; - rev = "e8598ef71038527a8a77d1a6cf2a73cfd96d9139"; - sha256 = "1dqpmc4hp81knhdk3mrmwdr66xiibsvj5lagbm5ciajg9by45mcs"; + rev = "v${version}"; + sha256 = "sha256-hM70WD+M3jwze0IG84WTFf1caOUk2s9DQ7pR+KNIt1M="; }; - goPackagePath = "github.com/dop251/diskrsync"; - goDeps = ./deps.nix; + vendorSha256 = "sha256-lJaM/sC5/qmmo7Zu7nGR6ZdXa1qw4SuVxawQ+d/m+Aw="; + + ldflags = [ "-s" "-w" ]; nativeBuildInputs = [ makeWrapper ]; @@ -26,5 +27,4 @@ buildGoPackage rec { license = licenses.mit; maintainers = with maintainers; [ jluttine ]; }; - } diff --git a/pkgs/tools/backup/diskrsync/deps.nix b/pkgs/tools/backup/diskrsync/deps.nix deleted file mode 100644 index 8045737164b..00000000000 --- a/pkgs/tools/backup/diskrsync/deps.nix +++ /dev/null @@ -1,48 +0,0 @@ -# file generated from go.mod using vgo2nix (https://github.com/adisbladis/vgo2nix) -[ - { - goPackagePath = "github.com/dop251/spgz"; - fetch = { - type = "git"; - url = "https://github.com/dop251/spgz"; - rev = "b86304a2b188"; - sha256 = "1zss1z523qagk99plb0my8m8ng0danl372iyk1pr4i2skp2bf5z7"; - }; - } - { - goPackagePath = "golang.org/x/crypto"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/crypto"; - rev = "9756ffdc2472"; - sha256 = "0q7hxaaq6lp0v8qqzifvysl47z5rfdlrxkh3d29vsl3wyby3dxl8"; - }; - } - { - goPackagePath = "golang.org/x/net"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/net"; - rev = "eb5bcb51f2a3"; - sha256 = "17k4g8krxbl84gzcs275b7gsh66dzm15fdxivjnx9xz8q84l4kby"; - }; - } - { - goPackagePath = "golang.org/x/sys"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/sys"; - rev = "97732733099d"; - sha256 = "118hkp01i4z1f5h6hcjm0ff2ngqhrzj1f7731n0kw8dr6hvbx0sw"; - }; - } - { - goPackagePath = "golang.org/x/text"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/text"; - rev = "v0.3.0"; - sha256 = "0r6x6zjzhr8ksqlpiwm5gdd7s209kwk5p4lw54xjvz10cs3qlq19"; - }; - } -] diff --git a/pkgs/tools/backup/restic/rest-server.nix b/pkgs/tools/backup/restic/rest-server.nix index 6296103c1c2..0e9a72381ba 100644 --- a/pkgs/tools/backup/restic/rest-server.nix +++ b/pkgs/tools/backup/restic/rest-server.nix @@ -3,11 +3,10 @@ buildGoModule rec { pname = "restic-rest-server"; version = "0.11.0"; - owner = "restic"; - repo = "rest-server"; src = fetchFromGitHub { - inherit owner repo; + owner = "restic"; + repo = "rest-server"; rev = "v${version}"; hash = "sha256-ninPODztNzvB2js9cuNAuExQLK/OGOu80ZNW0BPrdds="; }; @@ -17,7 +16,7 @@ buildGoModule rec { patches = [ (fetchpatch { name = "backport_rest-server_tests_os.TempDir.patch"; - url = "https://github.com/${owner}/${repo}/commit/a87a50ad114bdaddc895413396438df6ea0affbb.patch"; + url = "https://github.com/restic/rest-server/commit/a87a50ad114bdaddc895413396438df6ea0affbb.patch"; sha256 = "sha256-O6ENxTK2fCVTZZKTFHrvZ+3dT8TbgbIE0o3sYE/RUqc="; }) diff --git a/pkgs/tools/backup/wal-g/default.nix b/pkgs/tools/backup/wal-g/default.nix index 80f3b6bbf8d..3b0a990b52c 100644 --- a/pkgs/tools/backup/wal-g/default.nix +++ b/pkgs/tools/backup/wal-g/default.nix @@ -1,17 +1,19 @@ -{ lib, buildGoModule, fetchFromGitHub, brotli, libsodium }: +{ lib, buildGoModule, fetchFromGitHub, brotli, libsodium, installShellFiles }: buildGoModule rec { pname = "wal-g"; - version = "1.1"; + version = "2.0.0"; src = fetchFromGitHub { owner = "wal-g"; repo = "wal-g"; rev = "v${version}"; - sha256 = "1hiym5id310rvw7vr8wir2vpf0p5qz71rx6v5i2gpjqml7c97cls"; + sha256 = "sha256-xltKchk7RtP5tkoUhnJqVb17WW6qW/lSFdHivCbW5zY="; }; - vendorSha256 = "09z9x20zna1czhfpl47i98r8163a266mnr6xi17npjsfdvsjkppn"; + vendorSha256 = "sha256-w9AVcld8Gd1kYE2PkN8RVZ+/xlOZChKoWZFKvqhJuWI="; + + nativeBuildInputs = [ installShellFiles ]; buildInputs = [ brotli libsodium ]; @@ -23,6 +25,9 @@ buildGoModule rec { postInstall = '' mv $out/bin/pg $out/bin/wal-g + installShellCompletion --cmd wal-g \ + --bash <($out/bin/wal-g completion bash) \ + --zsh <($out/bin/wal-g completion zsh) ''; meta = with lib; { diff --git a/pkgs/tools/bluetooth/bluez-tools/default.nix b/pkgs/tools/bluetooth/bluez-tools/default.nix index dfb7147d08e..af76991436f 100644 --- a/pkgs/tools/bluetooth/bluez-tools/default.nix +++ b/pkgs/tools/bluetooth/bluez-tools/default.nix @@ -2,14 +2,14 @@ , fetchFromGitHub, glib, pkg-config }: stdenv.mkDerivation rec { - version = "unstable-2016-12-12"; + version = "unstable-2020-10-24"; pname = "bluez-tools"; src = fetchFromGitHub { owner = "khvzak"; repo = "bluez-tools"; - rev = "97efd293491ad7ec96a655665339908f2478b3d1"; - sha256 = "08xp77sf5wnq5086halmyk3vla4bfls06q1zrqdcq36hw6d409i6"; + rev = "f65321736475429316f07ee94ec0deac8e46ec4a"; + sha256 = "0xk39lz3hm8lcnb5fdbfz4ldbbq8gswg95vilzdwxzrglcr6xnqq"; }; nativeBuildInputs = [ pkg-config autoreconfHook ]; diff --git a/pkgs/tools/compression/lzip/default.nix b/pkgs/tools/compression/lzip/default.nix index 17abb6503c9..7fa7b4e35c8 100644 --- a/pkgs/tools/compression/lzip/default.nix +++ b/pkgs/tools/compression/lzip/default.nix @@ -7,13 +7,14 @@ stdenv.mkDerivation rec { pname = "lzip"; - version = "1.22"; + version = "1.23"; + outputs = [ "out" "man" "info" ]; nativeBuildInputs = [ texinfo ]; src = fetchurl { url = "mirror://savannah/lzip/${pname}-${version}.tar.gz"; - sha256 = "sha256-wzQtQuZxOcFluLEo0DO1yWiToTrF8lkzGQMVIU6HqUg="; + sha256 = "sha256-R5LAR93xXvKdVbqOaKGiHgy3aS2H7N9yBEGYZFgvKA0="; }; configureFlags = [ diff --git a/pkgs/tools/filesystems/9pfs/default.nix b/pkgs/tools/filesystems/9pfs/default.nix index 03f082a4038..d9c609d7c0a 100644 --- a/pkgs/tools/filesystems/9pfs/default.nix +++ b/pkgs/tools/filesystems/9pfs/default.nix @@ -24,6 +24,12 @@ stdenv.mkDerivation { buildInputs = [ fuse ]; + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: lib/auth_rpc.o:/build/source/lib/../9pfs.h:35: multiple definition of + # `logfile'; 9pfs.o:/build/source/9pfs.h:35: first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + enableParallelBuilding = true; meta = { diff --git a/pkgs/tools/filesystems/afpfs-ng/default.nix b/pkgs/tools/filesystems/afpfs-ng/default.nix index 9c4268e402d..b56bfba62cd 100644 --- a/pkgs/tools/filesystems/afpfs-ng/default.nix +++ b/pkgs/tools/filesystems/afpfs-ng/default.nix @@ -11,6 +11,12 @@ stdenv.mkDerivation { sha256 = "125jx1rsqkiifcffyjb05b2s36rllckdgjaf1bay15k9gzhwwldz"; }; + # Add workaround for -fno-common toolchains like upstream gcc-10 to + # avoid build failures like: + # ld: afpcmd-cmdline_main.o:/build/source/cmdline/cmdline_afp.h:4: multiple definition of + # `full_url'; afpcmd-cmdline_afp.o:/build/source/cmdline/cmdline_afp.c:27: first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + buildInputs = [ fuse readline libgcrypt gmp ]; meta = with lib; { diff --git a/pkgs/tools/filesystems/btrfs-progs/default.nix b/pkgs/tools/filesystems/btrfs-progs/default.nix index f9e5340802e..9d68d4fa272 100644 --- a/pkgs/tools/filesystems/btrfs-progs/default.nix +++ b/pkgs/tools/filesystems/btrfs-progs/default.nix @@ -23,9 +23,6 @@ stdenv.mkDerivation rec { buildInputs = [ acl attr e2fsprogs libuuid lzo python3 zlib zstd ] ++ lib.optionals stdenv.hostPlatform.isGnu [ udev ]; - # for python cross-compiling - _PYTHON_HOST_PLATFORM = stdenv.hostPlatform.config; - # gcc bug with -O1 on ARM with gcc 4.8 # This should be fine on all platforms so apply universally postPatch = "sed -i s/-O1/-O2/ configure"; @@ -38,6 +35,8 @@ stdenv.mkDerivation rec { makeFlags = lib.optionals stdenv.hostPlatform.isGnu [ "udevruledir=$(out)/lib/udev/rules.d" ]; + installFlags = [ "install_python" ]; + enableParallelBuilding = true; passthru.tests = { diff --git a/pkgs/tools/filesystems/go-mtpfs/default.nix b/pkgs/tools/filesystems/go-mtpfs/default.nix index 6a05d71d021..4bb2a3c24d5 100644 --- a/pkgs/tools/filesystems/go-mtpfs/default.nix +++ b/pkgs/tools/filesystems/go-mtpfs/default.nix @@ -1,20 +1,29 @@ -{ pkg-config, libusb1, buildGoPackage, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub, pkg-config, libusb1 }: -buildGoPackage rec { +buildGoModule rec { pname = "go-mtpfs"; - version = "unstable-2018-02-09"; - - goPackagePath = "github.com/hanwen/go-mtpfs"; + version = "1.0.0"; src = fetchFromGitHub { owner = "hanwen"; repo = "go-mtpfs"; - rev = "d6f8f3c05ce0ed31435057ec342268a0735863bb"; - sha256 = "sha256-sz+ikhZGwSIAI2YBSQKURF3WXB8dHgQ/C/dbkXwrDSg="; + rev = "v${version}"; + sha256 = "sha256-HVfB8/MImgZZLx4tcrlYOfQjpAdHMHshEaSsd+n758w="; }; + vendorSha256 = "sha256-OrAEvD2rF0Y0bvCD9TUv/E429lASsvC3uK3qNvbg734="; + + ldflags = [ "-s" "-w" ]; + nativeBuildInputs = [ pkg-config ]; buildInputs = [ libusb1 ]; - goDeps = ./deps.nix; + checkFlags = [ "-short" ]; + + meta = with lib; { + description = "A simple FUSE filesystem for mounting Android devices as a MTP device"; + homepage = "https://github.com/hanwen/go-mtpfs"; + license = licenses.bsd3; + maintainers = with maintainers; [ aaronjheng ]; + }; } diff --git a/pkgs/tools/filesystems/go-mtpfs/deps.nix b/pkgs/tools/filesystems/go-mtpfs/deps.nix deleted file mode 100644 index f558a53f7d2..00000000000 --- a/pkgs/tools/filesystems/go-mtpfs/deps.nix +++ /dev/null @@ -1,30 +0,0 @@ -# This file was generated by https://github.com/kamilchm/go2nix v1.3.0 -[ - { - goPackagePath = "github.com/hanwen/go-fuse"; - fetch = { - type = "git"; - url = "https://github.com/hanwen/go-fuse"; - rev = "d1c826d19ad0c8d0c7e5b4eb34ee0f2ae09f6cef"; - sha256 = "0hn2iqsb6rip2b05fvcngyh0sazln2h3fx18khq4fv41n1iy11dc"; - }; - } - { - goPackagePath = "github.com/hanwen/usb"; - fetch = { - type = "git"; - url = "https://github.com/hanwen/usb"; - rev = "69aee4530ac705cec7c5344418d982aaf15cf0b1"; - sha256 = "01k0c2g395j65vm1w37mmrfkg6nm900khjrrizzpmx8f8yf20dky"; - }; - } - { - goPackagePath = "golang.org/x/sys"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/sys"; - rev = "48ac38b7c8cbedd50b1613c0fccacfc7d88dfcdf"; - sha256 = "037vs8sdvq310j3b6z9k62zlby1mzmsr9ha01rcy98dv5v8bkhin"; - }; - } -] diff --git a/pkgs/tools/filesystems/httm/default.nix b/pkgs/tools/filesystems/httm/default.nix index 5c0bc74245f..776312c8902 100644 --- a/pkgs/tools/filesystems/httm/default.nix +++ b/pkgs/tools/filesystems/httm/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "httm"; - version = "0.9.0"; + version = "0.10.9"; src = fetchFromGitHub { owner = "kimono-koans"; repo = pname; rev = version; - sha256 = "sha256-uqzwS7+OQsPdMv3+fWdn3yVFJwtFZNd8kVWw//mQZj8="; + sha256 = "L8yqf+QadN+uZxBjT3RWG7L3QqIerNrNc1u9PP1pt1I="; }; - cargoSha256 = "sha256-EC3E5NawsDe+CU5WEu0G3FWVLuqW5nXOoUURN0iDPK0="; + cargoSha256 = "UxqgJBgKD7hGT0UjAVYqb+sjbZ1sYVVOQSDvRQROOso="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/tools/filesystems/hubicfuse/default.nix b/pkgs/tools/filesystems/hubicfuse/default.nix index 0ebc1f23223..95dabe2f97b 100644 --- a/pkgs/tools/filesystems/hubicfuse/default.nix +++ b/pkgs/tools/filesystems/hubicfuse/default.nix @@ -18,6 +18,12 @@ stdenv.mkDerivation rec { url = "https://github.com/TurboGit/hubicfuse/commit/b460f40d86bc281a21379158a7534dfb9f283786.patch"; sha256 = "0nqvcbrgbc5dms8fkz3brlj40yn48p36drabrnc26gvb3hydh5dl"; }) + # UPstream fix for build failure on -fno-common toolchains + (fetchpatch { + name = "fno-common.patch"; + url = "https://github.com/TurboGit/hubicfuse/commit/34a6c3e57467b5f7e9befe2171bf4292893c5a18.patch"; + sha256 = "0k1jz2h8sdhmi0srx0adbyrcrm57j4annj84yw6hdrly5hsf7bzc"; + }) ]; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/tools/filesystems/jfsutils/default.nix b/pkgs/tools/filesystems/jfsutils/default.nix index 290bc313910..52b8fc4c3c2 100644 --- a/pkgs/tools/filesystems/jfsutils/default.nix +++ b/pkgs/tools/filesystems/jfsutils/default.nix @@ -25,6 +25,12 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ autoreconfHook ]; buildInputs = [ libuuid ]; + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: extract.o:/build/jfsutils-1.1.15/fscklog/extract.c:67: multiple definition of + # `xchklog_buffer'; display.o:/build/jfsutils-1.1.15/fscklog/display.c:57: first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + meta = with lib; { description = "IBM JFS utilities"; homepage = "http://jfs.sourceforge.net"; diff --git a/pkgs/tools/graphics/amber/default.nix b/pkgs/tools/graphics/amber/default.nix index f5156dd08ab..4e1948ce87f 100644 --- a/pkgs/tools/graphics/amber/default.nix +++ b/pkgs/tools/graphics/amber/default.nix @@ -10,48 +10,48 @@ let glslang = fetchFromGitHub { owner = "KhronosGroup"; repo = "glslang"; - rev = "3ee5f2f1d3316e228916788b300d786bb574d337"; - sha256 = "1l5h9d92mzd35pgs0wibqfg7vbl771lwnvdlcsyhf6999khn5dzv"; + rev = "81cc10a498b25a90147cccd6e8939493c1e9e20e"; + hash = "sha256-jTOxZ1nU7kvtdWjPzyIp/5ZeKw3JtYyqhlFeIE7CyX8="; }; lodepng = fetchFromGitHub { owner = "lvandeve"; repo = "lodepng"; - rev = "34628e89e80cd007179b25b0b2695e6af0f57fac"; - sha256 = "10yaf218xnmhv7rsq6dysqrps43r30cgrs1z63h47z40x43ikia0"; + rev = "5601b8272a6850b7c5d693dd0c0e16da50be8d8d"; + hash = "sha256-dD8QoyOoGov6VENFNTXWRmen4nYYleoZ8+4TpICNSpo="; }; shaderc = fetchFromGitHub { owner = "google"; repo = "shaderc"; - rev = "ba92b11e1fcaf4c38a64f84d643d6429175bf650"; - sha256 = "041hip43siy2sr7h6habk9sxdmd45ag4kqgi8jk0vm1b8pqzkhqn"; + rev = "e72186b66bb90ed06aaf15cbdc9a053581a0616b"; + hash = "sha256-hd1IGsWksgAfB8Mq5yZOzSyNGxXsCJxb350pD/Gcskk="; }; spirv-headers = fetchFromGitHub { owner = "KhronosGroup"; repo = "SPIRV-Headers"; - rev = "3fdabd0da2932c276b25b9b4a988ba134eba1aa6"; - sha256 = "17h5cn4dyw8ixp1cpw8vf1z90m0fn1hhlvh0iycmknccbb1z34q7"; + rev = "b42ba6d92faf6b4938e6f22ddd186dbdacc98d78"; + hash = "sha256-ks9JCj5rj+Xu++7z5RiHDkU3/sFXhcScw8dATfB/ot0="; }; spirv-tools = fetchFromGitHub { owner = "KhronosGroup"; repo = "SPIRV-Tools"; - rev = "fd3cabd8b5fc43ce83884ac06486c283b9902b4f"; - sha256 = "1h3smicw5gzpa17syb30085zccydzs4f41fl30bcmiipdn2xfpjr"; + rev = "a73e724359a274d7cf4f4248eba5be1e7764fbfd"; + hash = "sha256-vooJHtgVRlBNkQG4hulYOxIgHH4GMhXw7N4OEbkKJvU="; }; in stdenv.mkDerivation rec { pname = "amber"; - version = "unstable-2020-09-23"; + version = "unstable-2022-04-21"; src = fetchFromGitHub { owner = "google"; repo = pname; - rev = "0eee2d45d053dfc566baa58442a9b1b708e4f2a7"; - sha256 = "1rrbvmn9hvhj7xj89yqvy9mx0vg1qapdm5fkca8mkd3516d9f5pw"; + rev = "8b145a6c89dcdb4ec28173339dd176fb7b6f43ed"; + hash = "sha256-+xFYlUs13khT6r475eJJ+XS875h2sb+YbJ8ZN4MOSAA="; }; buildInputs = [ diff --git a/pkgs/tools/graphics/cuneiform/default.nix b/pkgs/tools/graphics/cuneiform/default.nix index beaf2c1f213..ac777051d10 100644 --- a/pkgs/tools/graphics/cuneiform/default.nix +++ b/pkgs/tools/graphics/cuneiform/default.nix @@ -20,6 +20,12 @@ stdenv.mkDerivation { }) ]; + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: CMakeFiles/rbal.dir/src/statsearchbl.cpp.o:(.bss+0x0): + # multiple definition of `minrow'; CMakeFiles/rbal.dir/src/linban.c.o:(.bss+0xa3a): first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + postPatch = '' rm cuneiform_src/Kern/hhh/tigerh/h/strings.h ''; diff --git a/pkgs/tools/graphics/hobbits/default.nix b/pkgs/tools/graphics/hobbits/default.nix index 477c6bea249..cf3377d383e 100644 --- a/pkgs/tools/graphics/hobbits/default.nix +++ b/pkgs/tools/graphics/hobbits/default.nix @@ -1,16 +1,16 @@ { lib, stdenv, mkDerivation, fetchFromGitHub -, cmake, pkg-config, fftw, libpcap, libusb1, python3 +, cmake, pkg-config, pffft, libpcap, libusb1, python3 }: mkDerivation rec { pname = "hobbits"; - version = "0.52.0"; + version = "0.53.1"; src = fetchFromGitHub { owner = "Mahlet-Inc"; repo = pname; rev = "v${version}"; - sha256 = "sha256-GZHBkBRt1ySItV+h5rdvey7KwdUWh5+rgztXh6HW3Js="; + sha256 = "sha256-dMFsv2M96+65JxTOq0CG+vm7a75GkD7N7PmbsyZ2Fog="; }; postPatch = '' @@ -20,10 +20,12 @@ mkDerivation rec { --replace "[Mystery Build]" "${version}" ''; - buildInputs = [ fftw libpcap libusb1 python3 ]; + buildInputs = [ pffft libpcap libusb1 python3 ]; nativeBuildInputs = [ cmake pkg-config ]; + NIX_CFLAGS_COMPILE = lib.optional stdenv.hostPlatform.isAarch64 "-Wno-error=narrowing"; + meta = with lib; { description = "A multi-platform GUI for bit-based analysis, processing, and visualization"; homepage = "https://github.com/Mahlet-Inc/hobbits"; diff --git a/pkgs/tools/graphics/ploticus/default.nix b/pkgs/tools/graphics/ploticus/default.nix index 50b7aad48a0..f315dc9a63c 100644 --- a/pkgs/tools/graphics/ploticus/default.nix +++ b/pkgs/tools/graphics/ploticus/default.nix @@ -4,6 +4,7 @@ , zlib , libX11 , libpng +, libjpeg , gd , freetype }: @@ -36,6 +37,7 @@ stdenv.mkDerivation rec { libpng gd freetype + libjpeg ]; hardeningDisable = [ "format" ]; @@ -43,6 +45,7 @@ stdenv.mkDerivation rec { preBuild = '' cd src ''; + makeFlags = [ "CC=cc" ]; preInstall = '' mkdir -p "$out/bin" @@ -72,6 +75,6 @@ stdenv.mkDerivation rec { license = licenses.gpl2Plus; maintainers = with maintainers; [ pSub ]; homepage = "http://ploticus.sourceforge.net/"; - platforms = with platforms; linux; + platforms = with platforms; linux ++ darwin; }; } diff --git a/pkgs/development/python-modules/addic7ed-cli/default.nix b/pkgs/tools/misc/addic7ed-cli/default.nix index 3ee3a897a90..3ee3a897a90 100644 --- a/pkgs/development/python-modules/addic7ed-cli/default.nix +++ b/pkgs/tools/misc/addic7ed-cli/default.nix diff --git a/pkgs/tools/misc/audible-cli/default.nix b/pkgs/tools/misc/audible-cli/default.nix new file mode 100644 index 00000000000..98a34082184 --- /dev/null +++ b/pkgs/tools/misc/audible-cli/default.nix @@ -0,0 +1,28 @@ +{ lib, python3Packages, fetchFromGitHub }: + +python3Packages.buildPythonApplication rec { + pname = "audible-cli"; + version = "0.1.3"; + + src = fetchFromGitHub { + owner = "mkb79"; + repo = pname; + rev = "v${version}"; + sha256 = "0i71vwq2bhndndb0mlx21bc5jkv75cr60max5iaxk23agg3xpgwv"; + }; + + propagatedBuildInputs = with python3Packages; [ aiofiles audible click httpx pillow tabulate toml tqdm packaging setuptools ]; + + postPatch = '' + substituteInPlace setup.py \ + --replace "httpx==0.20.*" "httpx" \ + --replace "audible==0.7.2" "audible" + ''; + + meta = with lib; { + description = "A command line interface for audible package. With the cli you can download your Audible books, cover, chapter files"; + license = licenses.agpl3; + homepage = "https://github.com/mkb79/audible-cli"; + maintainers = with maintainers; [ jvanbruegge ]; + }; +} diff --git a/pkgs/tools/misc/calamares/default.nix b/pkgs/tools/misc/calamares/default.nix index e23471fc96d..a73a2821cbf 100644 --- a/pkgs/tools/misc/calamares/default.nix +++ b/pkgs/tools/misc/calamares/default.nix @@ -33,6 +33,9 @@ mkDerivation rec { ./uimod.patch # Remove options for unsupported partition types ./partitions.patch + # Fix setting the kayboard layout on GNOME wayland + # By default the module uses the setxkbmap, which will not change the keyboard + ./waylandkbd.patch ]; nativeBuildInputs = [ cmake extra-cmake-modules ]; @@ -57,7 +60,7 @@ mkDerivation rec { sed -e "s,pkexec calamares,calamares," \ -i calamares.desktop - sed -e "s,X-AppStream-Ignore=true,&\nStartupWMClass=io.calamares.calamares," \ + sed -e "s,X-AppStream-Ignore=true,&\nStartupWMClass=calamares," \ -i calamares.desktop # Fix desktop reference with wayland diff --git a/pkgs/tools/misc/calamares/waylandkbd.patch b/pkgs/tools/misc/calamares/waylandkbd.patch new file mode 100644 index 00000000000..37cddcf4e2a --- /dev/null +++ b/pkgs/tools/misc/calamares/waylandkbd.patch @@ -0,0 +1,25 @@ +diff --git a/src/modules/keyboard/Config.cpp b/src/modules/keyboard/Config.cpp +index 720588810..af0dd1c8d 100644 +--- a/src/modules/keyboard/Config.cpp ++++ b/src/modules/keyboard/Config.cpp +@@ -219,7 +219,10 @@ Config::xkbApply() + { m_additionalLayoutInfo.additionalVariant, m_selectedVariant }, + m_additionalLayoutInfo.groupSwitcher ) ); + +- ++ QString xkbmap = QString( "[('xkb','%1\%2'),('xkb','%3\%4')]").arg( ++ m_selectedLayout, ((!m_selectedVariant.isEmpty()) ? "+" + m_selectedVariant : ""), ++ m_additionalLayoutInfo.additionalLayout, ((!m_additionalLayoutInfo.additionalVariant.isEmpty()) ? "+" + m_additionalLayoutInfo.additionalVariant : "")); ++ QProcess::execute( "sh", { "-c", "if command -v gsettings; then gsettings set org.gnome.desktop.input-sources sources \"$0\"; fi", xkbmap }); + cDebug() << "xkbmap selection changed to: " << m_selectedLayout << '-' << m_selectedVariant << "(added " + << m_additionalLayoutInfo.additionalLayout << "-" << m_additionalLayoutInfo.additionalVariant + << " since current layout is not ASCII-capable)"; +@@ -227,6 +230,8 @@ Config::xkbApply() + else + { + QProcess::execute( "setxkbmap", xkbmap_layout_args( m_selectedLayout, m_selectedVariant ) ); ++ QString xkbmap = QString( "[('xkb','%1\%2')]").arg( m_selectedLayout, ((!m_selectedVariant.isEmpty()) ? "+" + m_selectedVariant : "") ); ++ QProcess::execute( "sh", { "-c", "if command -v gsettings; then gsettings set org.gnome.desktop.input-sources sources \"$0\"; fi", xkbmap }); + cDebug() << "xkbmap selection changed to: " << m_selectedLayout << '-' << m_selectedVariant; + } + m_setxkbmapTimer.disconnect( this ); diff --git a/pkgs/tools/misc/clickclack/default.nix b/pkgs/tools/misc/clickclack/default.nix index c7e1cbee79a..da351dbbc69 100644 --- a/pkgs/tools/misc/clickclack/default.nix +++ b/pkgs/tools/misc/clickclack/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "clickclack"; - version = "0.2.2"; + version = "0.2.3"; src = fetchFromSourcehut { owner = "~proycon"; repo = "clickclack"; rev = version; - hash = "sha256-ABVfJRSzbQ6jIpON2g2wS52QsyNQVfW6+AhTvjkkf6s="; + hash = "sha256-YmlbGEmZgT/30c+mWQzdz4rKc69d75zhoNUA5FdxdMc="; }; buildInputs = [ diff --git a/pkgs/tools/misc/diffoscope/default.nix b/pkgs/tools/misc/diffoscope/default.nix index a3f5c44781a..6bac37c98e7 100644 --- a/pkgs/tools/misc/diffoscope/default.nix +++ b/pkgs/tools/misc/diffoscope/default.nix @@ -11,11 +11,11 @@ # Note: when upgrading this package, please run the list-missing-tools.sh script as described below! python3Packages.buildPythonApplication rec { pname = "diffoscope"; - version = "210"; + version = "213"; src = fetchurl { url = "https://diffoscope.org/archive/diffoscope-${version}.tar.bz2"; - sha256 = "sha256-KaECH995scVdBbxQ4YhZUFmm04ptgi4yx14oDFX+zSw="; + sha256 = "sha256-l2kdV1QUGsS3D6Y/b485iDmQcBNIzaBywxhqfRDINX8="; }; outputs = [ "out" "man" ]; @@ -46,7 +46,7 @@ python3Packages.buildPythonApplication rec { pythonPath = [ binutils-unwrapped bzip2 colordiff coreutils cpio db diffutils e2fsprogs file findutils fontforge-fonttools gettext gnutar gzip - libarchive libcaca lz4 openssl pgpdump sng sqlite squashfsTools unzip xxd + libarchive lz4 openssl pgpdump sng sqlite squashfsTools unzip xxd xz zip zstd ] ++ (with python3Packages; [ @@ -56,7 +56,7 @@ python3Packages.buildPythonApplication rec { ++ lib.optionals stdenv.isLinux [ python3Packages.pyxattr acl cdrkit dtc ] ++ lib.optionals enableBloat ([ abootimg apksigner apktool cbfstool colord enjarify ffmpeg fpc ghc ghostscriptX giflib gnupg gnumeric - hdf5 imagemagick llvm jdk mono ocaml odt2txt oggvideotools openssh pdftk poppler_utils procyon qemu R tcpdump ubootTools wabt radare2 xmlbeans + hdf5 imagemagick libcaca llvm jdk mono ocaml odt2txt oggvideotools openssh pdftk poppler_utils procyon qemu R tcpdump ubootTools wabt radare2 xmlbeans ] ++ (with python3Packages; [ androguard binwalk guestfs h5py pdfminer ])); checkInputs = with python3Packages; [ pytestCheckHook ] ++ pythonPath; diff --git a/pkgs/tools/misc/dua/default.nix b/pkgs/tools/misc/dua/default.nix index d7f3eafe3ec..097aee5f068 100644 --- a/pkgs/tools/misc/dua/default.nix +++ b/pkgs/tools/misc/dua/default.nix @@ -2,7 +2,7 @@ rustPlatform.buildRustPackage rec { pname = "dua"; - version = "2.17.1"; + version = "2.17.5"; buildInputs = lib.optionals stdenv.isDarwin [ libiconv Foundation ]; @@ -10,7 +10,7 @@ rustPlatform.buildRustPackage rec { owner = "Byron"; repo = "dua-cli"; rev = "v${version}"; - sha256 = "sha256-58l0E5wwRKbF/ja3fmMMBIONjuwVOxlwdKRT5BeO9MQ="; + sha256 = "sha256-dpkUbZz/bIiTMhZalXHGct77qMzYB6LATs7MPVyW1GY="; # Remove unicode file names which leads to different checksums on HFS+ # vs. other filesystems because of unicode normalisation. extraPostFetch = '' @@ -18,13 +18,14 @@ rustPlatform.buildRustPackage rec { ''; }; - cargoSha256 = "sha256-nft0wrgTMrI8Tav6NcqPwSF8Q367twIOr1voBsW2488="; + cargoSha256 = "sha256-xBiabY0aGPxrAHypuSg3AF/EcChDgtIK9cJDCeTNkm0="; doCheck = false; meta = with lib; { description = "A tool to conveniently learn about the disk usage of directories, fast!"; homepage = "https://github.com/Byron/dua-cli"; + changelog = "https://github.com/Byron/dua-cli/raw/v${version}/CHANGELOG.md"; license = with licenses; [ mit ]; maintainers = with maintainers; [ killercup ]; }; diff --git a/pkgs/tools/misc/esphome/dashboard.nix b/pkgs/tools/misc/esphome/dashboard.nix index 1f101735e98..52ec2688103 100644 --- a/pkgs/tools/misc/esphome/dashboard.nix +++ b/pkgs/tools/misc/esphome/dashboard.nix @@ -5,11 +5,11 @@ buildPythonPackage rec { pname = "esphome-dashboard"; - version = "20220309.0"; + version = "20220508.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-J/T3Av0jwT0CJSwc0j+YjaiKFqs9soLf7ctpiz5rmm4="; + sha256 = "sha256-nBVVNe6Qwo72ws6G8WAO99f2ftbxoixOB0eiLuILyeg="; }; # no tests diff --git a/pkgs/tools/misc/esphome/default.nix b/pkgs/tools/misc/esphome/default.nix index 3ce65eb2038..6eba2ca9446 100644 --- a/pkgs/tools/misc/esphome/default.nix +++ b/pkgs/tools/misc/esphome/default.nix @@ -15,14 +15,14 @@ let in with python.pkgs; buildPythonApplication rec { pname = "esphome"; - version = "2022.4.0"; + version = "2022.5.0"; format = "setuptools"; src = fetchFromGitHub { owner = pname; repo = pname; rev = version; - sha256 = "sha256-/IMiUMtWFouAjOlyq+BXvqQ1IddBXvua7y0i4J1cktM="; + sha256 = "sha256-ys4oGYZvOxKOLyeIFPR33L2uCAB1lybSo6nCIYFuA/0="; }; postPatch = '' diff --git a/pkgs/tools/misc/ets/default.nix b/pkgs/tools/misc/ets/default.nix new file mode 100644 index 00000000000..cccd0db35e2 --- /dev/null +++ b/pkgs/tools/misc/ets/default.nix @@ -0,0 +1,42 @@ +{ lib, buildGoModule, fetchFromGitHub, fetchpatch, installShellFiles }: + +buildGoModule rec { + pname = "ets"; + version = "0.2.1"; + + src = fetchFromGitHub { + owner = "zmwangx"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-XWIDo5msTMTLr60x1R9cwsiZIDG6G+uHWx8idt4F2iA="; + }; + + # https://github.com/zmwangx/ets/pull/18/ + patches = [ (fetchpatch { + url = "https://github.com/zmwangx/ets/commit/600ec17a9c86ca63cd022d00439cdc4978e2afa9.patch"; + sha256 = "sha256-SGCISHkWNFubgKkQYx8Vf5/fknNDfPNYkSuw1mMhZaE="; + }) ]; + + vendorSha256 = "sha256-+8dXfqOu8XTw2uEx3GAynQSHtzifejZtddr1CdxrupA="; + + ldflags = [ "-s" "-w" "-X main.version=v${version}-nixpkgs" ]; + + nativeBuildInputs = [ installShellFiles ]; + + preBuild = '' + rm -rf fixtures + ''; + + postInstall = '' + installManPage ets.1 + ''; + + doCheck = false; + + meta = with lib; { + description = "Command output timestamper"; + homepage = "https://github.com/zmwangx/ets/"; + license = licenses.mit; + maintainers = with maintainers; [ cameronfyfe ]; + }; +} diff --git a/pkgs/tools/misc/fontforge/default.nix b/pkgs/tools/misc/fontforge/default.nix index 3de016bf6d6..aa3d16a5fa5 100644 --- a/pkgs/tools/misc/fontforge/default.nix +++ b/pkgs/tools/misc/fontforge/default.nix @@ -63,7 +63,6 @@ stdenv.mkDerivation rec { ++ lib.optional (!withGTK) "-DENABLE_X11=ON" ++ lib.optional withExtras "-DENABLE_FONTFORGE_EXTRAS=ON"; - # work-around: git isn't really used, but configuration fails without it preConfigure = '' # The way $version propagates to $version of .pe-scripts (https://github.com/dejavu-fonts/dejavu-fonts/blob/358190f/scripts/generate.pe#L19) export SOURCE_DATE_EPOCH=$(date -d ${version} +%s) diff --git a/pkgs/tools/misc/goreleaser/default.nix b/pkgs/tools/misc/goreleaser/default.nix index 412f2733304..9b9505c9beb 100644 --- a/pkgs/tools/misc/goreleaser/default.nix +++ b/pkgs/tools/misc/goreleaser/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "goreleaser"; - version = "1.8.3"; + version = "1.9.0"; src = fetchFromGitHub { owner = "goreleaser"; repo = pname; rev = "v${version}"; - sha256 = "sha256-EqUaJHlZupk8CP0ob8pL5tAW/bzG38eZmA4hgTg1jYY="; + sha256 = "sha256-R20mzPpbFDUw/wrif3ZJCt2wgmV+yqSkGaxyuw/9z0E="; }; - vendorSha256 = "sha256-UAApPni4zIAQVOmPAah5vEE8kTrGaJ3irjtsukBNVHo="; + vendorSha256 = "sha256-+Rj2hb9Sul5ntVGfuWf7JibKdG03zALiMWaaNTJFC8k="; ldflags = [ "-s" diff --git a/pkgs/tools/misc/grub/2.0x.nix b/pkgs/tools/misc/grub/2.0x.nix index 745689e312f..f45116ddf22 100644 --- a/pkgs/tools/misc/grub/2.0x.nix +++ b/pkgs/tools/misc/grub/2.0x.nix @@ -90,6 +90,8 @@ stdenv.mkDerivation rec { hardeningDisable = [ "all" ]; + separateDebugInfo = true; + # Work around a bug in the generated flex lexer (upstream flex bug?) NIX_CFLAGS_COMPILE = "-Wno-error"; diff --git a/pkgs/tools/misc/handlr/default.nix b/pkgs/tools/misc/handlr/default.nix index e9cd89c5f2d..19f02cdd1b1 100644 --- a/pkgs/tools/misc/handlr/default.nix +++ b/pkgs/tools/misc/handlr/default.nix @@ -2,19 +2,19 @@ rustPlatform.buildRustPackage rec { pname = "handlr"; - version = "0.6.4"; + version = "unstable-2021-08-29"; src = fetchFromGitHub { owner = "chmln"; repo = pname; - rev = "v${version}"; - sha256 = "sha256-UYcJtBwbUDqDiRoj5PmO+urURfd7S7fSx2XhQRBrKTE="; + rev = "90e78ba92d0355cb523abf268858f3123fd81238"; + sha256 = "sha256-wENhlUBwfNg/r7yMKa1cQI1fbFw+qowwK8EdO912Yys="; }; - cargoSha256 = "sha256-xDQV8wVlzItz0lzR1nVRPVsg7nSf/khUhevDlGgSO3g="; + cargoSha256 = "sha256-30fSOzWq1CoIabPWGWndi/SaCN/ckxjlbtzuwV8rk6M="; nativeBuildInputs = [ installShellFiles shared-mime-info ]; - buildInputs = lib.optional stdenv.isDarwin libiconv; + buildInputs = lib.optionals stdenv.isDarwin [ libiconv ]; preCheck = '' export HOME=$TEMPDIR @@ -23,6 +23,7 @@ rustPlatform.buildRustPackage rec { postInstall = '' installShellCompletion \ --zsh completions/_handlr \ + --bash completions/handlr \ --fish completions/handlr.fish ''; @@ -30,6 +31,6 @@ rustPlatform.buildRustPackage rec { description = "Alternative to xdg-open to manage default applications with ease"; homepage = "https://github.com/chmln/handlr"; license = licenses.mit; - maintainers = with maintainers; [ mredaelli ]; + maintainers = with maintainers; [ mredaelli artturin ]; }; } diff --git a/pkgs/tools/misc/ipxe/default.nix b/pkgs/tools/misc/ipxe/default.nix index 601f2a57eea..dacc3416c93 100644 --- a/pkgs/tools/misc/ipxe/default.nix +++ b/pkgs/tools/misc/ipxe/default.nix @@ -40,6 +40,10 @@ stdenv.mkDerivation rec { sha256 = "SrTNEYk13JXAcJuogm9fZ7CrzJIDRc0aziGdjRNv96I="; }; + postPatch = lib.optionalString stdenv.hostPlatform.isAarch64 '' + substituteInPlace src/util/genfsimg --replace " syslinux " " true " + ''; # calling syslinux on a FAT image isn't going to work + # not possible due to assembler code hardeningDisable = [ "pic" "stackprotector" ]; diff --git a/pkgs/tools/misc/lazydocker/default.nix b/pkgs/tools/misc/lazydocker/default.nix index cfdce8e3c0b..985cc472138 100644 --- a/pkgs/tools/misc/lazydocker/default.nix +++ b/pkgs/tools/misc/lazydocker/default.nix @@ -1,19 +1,25 @@ -{ lib, buildGoPackage, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub }: -buildGoPackage rec { +buildGoModule rec { pname = "lazydocker"; - version = "0.13"; + version = "0.18.1"; src = fetchFromGitHub { owner = "jesseduffield"; repo = "lazydocker"; rev = "v${version}"; - sha256 = "sha256-thUm33AdP9Huc2vcTRatC1ULHZd0edEQggEGTqOV3a0="; + sha256 = "sha256-qtGPsfZVu5ZuCusO5nYgxR/qHiwyhzMmBMLMDpKzKDA="; }; - goPackagePath = "github.com/jesseduffield/lazydocker"; + vendorSha256 = null; - subPackages = [ "." ]; + postPatch = '' + rm -f pkg/config/app_config_test.go + ''; + + excludedPackages = [ "scripts" "test/printrandom" ]; + + ldflags = [ "-s" "-w" "-X main.version=${version}" ]; meta = with lib; { description = "A simple terminal UI for both docker and docker-compose"; diff --git a/pkgs/tools/misc/libbitcoin/fix-gcc11-compilation.patch b/pkgs/tools/misc/libbitcoin/fix-gcc11-compilation.patch new file mode 100644 index 00000000000..fe1b9777275 --- /dev/null +++ b/pkgs/tools/misc/libbitcoin/fix-gcc11-compilation.patch @@ -0,0 +1,12 @@ +diff --git a/include/bitcoin/bitcoin/wallet/dictionary.hpp b/include/bitcoin/bitcoin/wallet/dictionary.hpp +index 632f1afc..63a51764 100644 +--- a/include/bitcoin/bitcoin/wallet/dictionary.hpp ++++ b/include/bitcoin/bitcoin/wallet/dictionary.hpp +@@ -19,6 +19,7 @@ + #ifndef LIBBITCOIN_WALLET_DICTIONARY_HPP + #define LIBBITCOIN_WALLET_DICTIONARY_HPP + ++#include <cstddef> + #include <array> + #include <vector> + #include <bitcoin/bitcoin/compat.hpp> diff --git a/pkgs/tools/misc/libbitcoin/libbitcoin.nix b/pkgs/tools/misc/libbitcoin/libbitcoin.nix index 65bd52a0302..88f9a81561b 100644 --- a/pkgs/tools/misc/libbitcoin/libbitcoin.nix +++ b/pkgs/tools/misc/libbitcoin/libbitcoin.nix @@ -21,6 +21,8 @@ in stdenv.mkDerivation { enableParallelBuilding = true; + patches = [ ./fix-gcc11-compilation.patch ]; + configureFlags = [ "--with-tests=no" "--with-boost=${boost.dev}" diff --git a/pkgs/tools/misc/marlin-calc/default.nix b/pkgs/tools/misc/marlin-calc/default.nix index cdcdad99477..38a4f4ffb35 100644 --- a/pkgs/tools/misc/marlin-calc/default.nix +++ b/pkgs/tools/misc/marlin-calc/default.nix @@ -11,6 +11,11 @@ stdenv.mkDerivation { sha256 = "14sqajm361gnrcqv84g7kbmyqm8pppbhqsabszc4j2cn7vbwkdg5"; }; + postPatch = '' + # missing header for gcc >= 11 + sed -i '1i#include <limits>' Marlin/src/module/calc.cpp + ''; + buildPhase = '' cd Marlin/src c++ module/planner.cpp module/calc.cpp feature/fwretract.cpp \ diff --git a/pkgs/tools/misc/mutagen-compose/default.nix b/pkgs/tools/misc/mutagen-compose/default.nix new file mode 100644 index 00000000000..374d6ba0518 --- /dev/null +++ b/pkgs/tools/misc/mutagen-compose/default.nix @@ -0,0 +1,27 @@ +{ lib, buildGo118Module, fetchFromGitHub, fetchzip }: + +buildGo118Module rec { + pname = "mutagen-compose"; + version = "0.14.0"; + + src = fetchFromGitHub { + owner = "mutagen-io"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-FNV4X9/BdnfFGKVJXNpCJLdr3Y29LrGi+zUuQ07xUbE="; + }; + + vendorSha256 = "sha256-5nt9YHMgaRpkFdOnBTU4gSdOtB3h9Cj5CCUjx9PJ/m8="; + + doCheck = false; + + subPackages = [ "cmd/mutagen-compose" ]; + + meta = with lib; { + description = "Compose with Mutagen integration"; + homepage = "https://mutagen.io/"; + changelog = "https://github.com/mutagen-io/mutagen-compose/releases/tag/v${version}"; + maintainers = [ maintainers.matthewpi ]; + license = licenses.mit; + }; +} diff --git a/pkgs/tools/misc/neofetch/default.nix b/pkgs/tools/misc/neofetch/default.nix index 64632986638..9a6d03c6dca 100644 --- a/pkgs/tools/misc/neofetch/default.nix +++ b/pkgs/tools/misc/neofetch/default.nix @@ -4,7 +4,7 @@ stdenvNoCC.mkDerivation rec { pname = "neofetch"; - version = "unstable-2020-12-10"; + version = "unstable-2021-12-10"; src = fetchFromGitHub { owner = "dylanaraps"; @@ -19,8 +19,16 @@ stdenvNoCC.mkDerivation rec { sha256 = "1fapdg9z79f0j3vw7fgi72b54aw4brn42bjsj48brbvg3ixsciph"; name = "avoid_overwriting_gio_extra_modules_env_var.patch"; }) + # https://github.com/dylanaraps/neofetch/pull/2114 + (fetchpatch { + url = "https://github.com/dylanaraps/neofetch/commit/c4eb4ec7783bb94cca0dbdc96db45a4d965956d2.patch"; + sha256 = "sha256-F6Q4dUtfmR28VxLbITiLFJ44FjG4T1Cvuz3a0nLisMs="; + name = "update_old_nixos_logo.patch"; + }) ]; + outputs = [ "out" "man" ]; + strictDeps = true; buildInputs = [ bash ]; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/tools/misc/nix-direnv/default.nix b/pkgs/tools/misc/nix-direnv/default.nix index ae091c8d386..15c80f1e683 100644 --- a/pkgs/tools/misc/nix-direnv/default.nix +++ b/pkgs/tools/misc/nix-direnv/default.nix @@ -7,13 +7,13 @@ }: stdenv.mkDerivation rec { pname = "nix-direnv"; - version = "2.0.1"; + version = "2.1.0"; src = fetchFromGitHub { owner = "nix-community"; repo = "nix-direnv"; rev = version; - sha256 = "sha256-edRdnMNYB5N9v9QlfSFNqJl93X0rSCllmzSZO9+sCOg="; + sha256 = "sha256-PANJTaGdMvIPglgQCOs+fJc20ZnnHXx7rBdyoA4rQ0A="; }; # Substitute instead of wrapping because the resulting file is @@ -34,6 +34,6 @@ stdenv.mkDerivation rec { homepage = "https://github.com/nix-community/nix-direnv"; license = licenses.mit; platforms = platforms.unix; - maintainers = with maintainers; [ mic92 ]; + maintainers = with maintainers; [ mic92 bbenne10 ]; }; } diff --git a/pkgs/tools/misc/oci-image-tool/default.nix b/pkgs/tools/misc/oci-image-tool/default.nix deleted file mode 100644 index 8cac6d1c3f5..00000000000 --- a/pkgs/tools/misc/oci-image-tool/default.nix +++ /dev/null @@ -1,23 +0,0 @@ -{ lib, fetchFromGitHub, buildGoPackage }: - -buildGoPackage rec { - pname = "oci-image-tool"; - version = "1.0.0-rc1"; - - goPackagePath = "github.com/opencontainers/image-tools"; - subPackages = [ "cmd/oci-image-tool" ]; - - src = fetchFromGitHub { - owner = "opencontainers"; - repo = "image-tools"; - rev = "v${version}"; - sha256 = "0c4n69smqlkf0r6khy9gbg5f810qh9g8jqsl9kibb0dyswizr14r"; - }; - - meta = { - description = "A collection of tools for working with the OCI image format specification"; - homepage = "https://github.com/opencontainers/image-tools"; - license = lib.licenses.asl20; - maintainers = with lib.maintainers; [ nzhang-zh ]; - }; -} diff --git a/pkgs/tools/misc/opentelemetry-collector/contrib.nix b/pkgs/tools/misc/opentelemetry-collector/contrib.nix index e158f1c3f44..72048610021 100644 --- a/pkgs/tools/misc/opentelemetry-collector/contrib.nix +++ b/pkgs/tools/misc/opentelemetry-collector/contrib.nix @@ -6,17 +6,17 @@ buildGoModule rec { pname = "opentelemetry-collector-contrib"; - version = "0.47.0"; + version = "0.51.0"; src = fetchFromGitHub { owner = "open-telemetry"; repo = "opentelemetry-collector-contrib"; rev = "v${version}"; - sha256 = "sha256-IbpQd01uU6/Ihli+gVDjTB8T8cj//XHoZYcDjXD635Q="; + sha256 = "sha256-lMTOJFGuJhdXOvCk70Bee97Vb0HBCDnOLeK2q7S4hW8="; }; # proxy vendor to avoid hash missmatches between linux and macOS proxyVendor = true; - vendorSha256 = "sha256-1svBCXfutjXfXfVqVHUTAt9T1ON/qbiS+VCt5kP/YIc="; + vendorSha256 = "sha256-CzFcSvJCMfS83Semk92XUd9iSX6OjOrDzRUNNLVtpi4="; subPackages = [ "cmd/otelcontribcol" ]; diff --git a/pkgs/tools/misc/opentelemetry-collector/default.nix b/pkgs/tools/misc/opentelemetry-collector/default.nix index 1feb290bb13..35ae2ca3f14 100644 --- a/pkgs/tools/misc/opentelemetry-collector/default.nix +++ b/pkgs/tools/misc/opentelemetry-collector/default.nix @@ -12,17 +12,17 @@ let in buildGoModule rec { pname = "opentelemetry-collector"; - version = "0.47.0"; + version = "0.51.0"; src = fetchFromGitHub { owner = "open-telemetry"; repo = "opentelemetry-collector"; rev = "v${version}"; - sha256 = "sha256-1dMdQWV+gxbMc/2iVsB1LCsYxR0bt5AJEvoFq2/KHCg="; + sha256 = "sha256-XCOyvFWvgGxjuOdyFk4Rh+HO8GBdRfWcR73h+7lF+8E="; }; # there is a nested go.mod sourceRoot = "source/cmd/otelcorecol"; - vendorSha256 = "sha256-ps6fUVg7vhGgy47WTJv/U1qHQ2MGXIWXNZ5Rddo1yQY="; + vendorSha256 = "sha256-BAcJpiO6jFKcjtbBA9LDad1ifDpb47nWOylH8dDBUN0="; preBuild = '' # set the build version, can't be done via ldflags diff --git a/pkgs/tools/misc/pandoc-drawio-filter/default.nix b/pkgs/tools/misc/pandoc-drawio-filter/default.nix index 1279296143c..73dd658dfb1 100644 --- a/pkgs/tools/misc/pandoc-drawio-filter/default.nix +++ b/pkgs/tools/misc/pandoc-drawio-filter/default.nix @@ -1,5 +1,5 @@ { buildPythonApplication -, drawio +, drawio-headless , fetchFromGitHub , lib , pandoc @@ -21,32 +21,13 @@ let sha256 = "sha256-2XJSAfxqEmmamWIAM3vZqi0mZjUUugmR3zWw8Imjadk="; }; - wrappedDrawio = writeScriptBin "drawio" '' - #!${runtimeShell} - - # Electron really wants a configuration directory to not die with: - # "Error: Failed to get 'appData' path" - # so we give it some temp dir as XDG_CONFIG_HOME - tmpdir=$(mktemp -d) - - function cleanup { - rm -rf "$tmpdir" - } - trap cleanup EXIT - - # Drawio needs to run in a virtual X session, because Electron - # refuses to work and dies with an unhelpful error message otherwise: - # "The futex facility returned an unexpected error code." - XDG_CONFIG_HOME="$tmpdir" ${xvfb-run}/bin/xvfb-run ${drawio}/bin/drawio $@ - ''; - pandoc-drawio-filter = buildPythonApplication { pname = "pandoc-drawio-filter"; inherit src version; propagatedBuildInputs = [ - wrappedDrawio + drawio-headless pandocfilters ]; diff --git a/pkgs/tools/misc/shellspec/default.nix b/pkgs/tools/misc/shellspec/default.nix index 27eead6e1c3..480ada8d571 100644 --- a/pkgs/tools/misc/shellspec/default.nix +++ b/pkgs/tools/misc/shellspec/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub }: +{ lib, stdenv, fetchFromGitHub, bash }: stdenv.mkDerivation rec { pname = "shellspec"; @@ -11,6 +11,8 @@ stdenv.mkDerivation rec { sha256 = "1ib5qp29f2fmivwnv6hq35qhvdxz42xgjlkvy0i3qn758riyqf46"; }; + strictDeps = true; + buildInputs = [ bash ]; makeFlags = [ "PREFIX=${placeholder "out"}" ]; checkPhase = '' diff --git a/pkgs/tools/misc/svtplay-dl/default.nix b/pkgs/tools/misc/svtplay-dl/default.nix index 1ed9a9fd237..091ff8d0390 100644 --- a/pkgs/tools/misc/svtplay-dl/default.nix +++ b/pkgs/tools/misc/svtplay-dl/default.nix @@ -9,13 +9,13 @@ let in stdenv.mkDerivation rec { pname = "svtplay-dl"; - version = "4.11"; + version = "4.12"; src = fetchFromGitHub { owner = "spaam"; repo = "svtplay-dl"; rev = version; - sha256 = "1ybip45bfmvajw046v6mxjbf3vv0y7zgfb454rjy56zhx40l232v"; + sha256 = "0vkrbizfgchnzinyyl5ppmbqs156j6mmy1gqxj41d3082w1gqr09"; }; pythonPaths = [ cryptography pyyaml requests ]; diff --git a/pkgs/tools/misc/tealdeer/default.nix b/pkgs/tools/misc/tealdeer/default.nix index 921cdd677a1..54a5054ec98 100644 --- a/pkgs/tools/misc/tealdeer/default.nix +++ b/pkgs/tools/misc/tealdeer/default.nix @@ -1,4 +1,5 @@ -{ lib, stdenv +{ lib +, stdenv , rustPlatform , fetchFromGitHub , pkg-config @@ -25,9 +26,10 @@ rustPlatform.buildRustPackage rec { nativeBuildInputs = [ installShellFiles pkg-config ]; postInstall = '' - installShellCompletion --bash --name tealdeer.bash bash_tealdeer - installShellCompletion --fish --name tealdeer.fish fish_tealdeer - installShellCompletion --zsh --name _tealdeer zsh_tealdeer + installShellCompletion --cmd tldr \ + --bash bash_tealdeer \ + --fish fish_tealdeer \ + --zsh zsh_tealdeer ''; # disable tests for now since one needs network diff --git a/pkgs/tools/misc/txr/default.nix b/pkgs/tools/misc/txr/default.nix index 4b521ed9dda..e667c988ca6 100644 --- a/pkgs/tools/misc/txr/default.nix +++ b/pkgs/tools/misc/txr/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "txr"; - version = "274"; + version = "275"; src = fetchurl { url = "http://www.kylheku.com/cgit/txr/snapshot/${pname}-${version}.tar.bz2"; - sha256 = "sha256-bWgz0kmPLN0V0rkFRiCqxkBjhN8FV9fL+Vu8GSw9Ja4="; + sha256 = "sha256-HmykTyh5F49CBa1w7o/HV6Q5Lsx1Qkxe0JBHQdGxVB4="; }; buildInputs = [ libffi ]; diff --git a/pkgs/tools/misc/wimboot/default.nix b/pkgs/tools/misc/wimboot/default.nix index 67df4056b5f..bc43d77bbfb 100644 --- a/pkgs/tools/misc/wimboot/default.nix +++ b/pkgs/tools/misc/wimboot/default.nix @@ -26,6 +26,6 @@ stdenv.mkDerivation rec { description = "Windows Imaging Format bootloader"; license = licenses.gpl2Plus; maintainers = with maintainers; [ das_j ajs124 ]; - platforms = platforms.x86; # Fails on aarch64 + platforms = [ "x86_64-linux" ]; }; } diff --git a/pkgs/tools/misc/wootility/default.nix b/pkgs/tools/misc/wootility/default.nix index a79f414a359..cb3eeca27af 100644 --- a/pkgs/tools/misc/wootility/default.nix +++ b/pkgs/tools/misc/wootility/default.nix @@ -1,8 +1,6 @@ { appimageTools , fetchurl , lib -, gsettings-desktop-schemas -, gtk3 , libxkbfile , udev , wooting-udev-rules @@ -21,7 +19,6 @@ appimageTools.wrapType2 rec { profile = '' export LC_ALL=C.UTF-8 - export XDG_DATA_DIRS="${gsettings-desktop-schemas}/share/gsettings-schemas/${gsettings-desktop-schemas.name}:${gtk3}/share/gsettings-schemas/${gtk3.name}:$XDG_DATA_DIRS" ''; multiPkgs = extraPkgs; diff --git a/pkgs/tools/misc/yt-dlp/default.nix b/pkgs/tools/misc/yt-dlp/default.nix index d67678f6ee5..0eab77c5ab6 100644 --- a/pkgs/tools/misc/yt-dlp/default.nix +++ b/pkgs/tools/misc/yt-dlp/default.nix @@ -20,12 +20,12 @@ buildPythonPackage rec { # The websites yt-dlp deals with are a very moving target. That means that # downloads break constantly. Because of that, updates should always be backported # to the latest stable release. - version = "2022.04.08"; + version = "2022.05.18"; src = fetchPypi { inherit pname; version = builtins.replaceStrings [ ".0" ] [ "." ] version; - sha256 = "sha256-h1jQFlCdRXS5D73pdapwra73HtXnoZUUFYj21pRSBbo="; + sha256 = "sha256-OntZ0vtLOc6LqOC5xaN/4g5WJPRqI0a0rmarEyDjUTQ="; }; propagatedBuildInputs = [ brotli certifi mutagen pycryptodomex websockets ]; @@ -67,6 +67,6 @@ buildPythonPackage rec { you can modify it, redistribute it or use it however you like. ''; license = licenses.unlicense; - maintainers = with maintainers; [ mkg20001 SuperSandro2000 ]; + maintainers = with maintainers; [ mkg20001 SuperSandro2000 marsam ]; }; } diff --git a/pkgs/tools/misc/yubikey-personalization/default.nix b/pkgs/tools/misc/yubikey-personalization/default.nix index 59739e06aa0..f8583f36140 100644 --- a/pkgs/tools/misc/yubikey-personalization/default.nix +++ b/pkgs/tools/misc/yubikey-personalization/default.nix @@ -16,6 +16,14 @@ stdenv.mkDerivation rec { url = "https://github.com/Yubico/yubikey-personalization/commit/0aa2e2cae2e1777863993a10c809bb50f4cde7f8.patch"; sha256 = "1wnigf3hbq59i15kgxpq3pwrl1drpbj134x81mmv9xm1r44cjva8"; }) + + # Pull upstream fix for -fno-common toolchain support: + # https://github.com/Yubico/yubikey-personalization/issues/155 + (fetchpatch { + name = "fno-common.patch"; + url = "https://github.com/Yubico/yubikey-personalization/commit/09ea16d9e2030e4da6ad00c1e5147e962aa7ff84.patch"; + sha256 = "0n3ka8n7f3ndbxv3k0bi77d850kr2ypglkw81gqycpqyaciidqwa"; + }) ]; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/tools/misc/zabbixctl/default.nix b/pkgs/tools/misc/zabbixctl/default.nix index 81d81b6794e..3b25d479388 100644 --- a/pkgs/tools/misc/zabbixctl/default.nix +++ b/pkgs/tools/misc/zabbixctl/default.nix @@ -1,19 +1,19 @@ -{ lib, buildGoPackage, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub }: -buildGoPackage rec { +buildGoModule rec { pname = "zabbixctl"; - version = "unstable-2019-07-06"; - - goPackagePath = "github.com/kovetskiy/zabbixctl"; + version = "unstable-2021-05-25"; src = fetchFromGitHub { owner = "kovetskiy"; repo = pname; - rev = "f2e856b7ab7d8ff9f494fe9f481bbaef18ea6ff7"; - sha256 = "1lr3g9h3aa2px2kh5b2qcpj3aqyhqwq7kj1s9wifgmri9q7fsdzy"; + rev = "872d73b12901b143898bffe3711b93a34ca75abe"; + sha256 = "sha256-fWT3cgIHjHcKwFDjWIf3BUUUaVZ7hyc2ibkpU+AsW0I="; }; - goDeps = ./deps.nix; + vendorSha256 = "sha256-BphQcPPmeNU7RDtaHJQxIoW8xxD86xWgqLBsLR08Tag="; + + ldflags = [ "-s" "-w" ]; meta = with lib; { description = "Most effective way for operating in Zabbix Server"; diff --git a/pkgs/tools/misc/zabbixctl/deps.nix b/pkgs/tools/misc/zabbixctl/deps.nix deleted file mode 100644 index 2bf015acf5f..00000000000 --- a/pkgs/tools/misc/zabbixctl/deps.nix +++ /dev/null @@ -1,111 +0,0 @@ -# This file was generated by https://github.com/kamilchm/go2nix v1.3.0 -[ - { - goPackagePath = "github.com/BurntSushi/toml"; - fetch = { - type = "git"; - url = "https://github.com/BurntSushi/toml"; - rev = "3012a1dbe2e4bd1391d42b32f0577cb7bbc7f005"; - sha256 = "1fjdwwfzyzllgiwydknf1pwjvy49qxfsczqx5gz3y0izs7as99j6"; - }; - } - { - goPackagePath = "github.com/jinzhu/configor"; - fetch = { - type = "git"; - url = "https://github.com/jinzhu/configor"; - rev = "9064de4b2535f218bde55dc8de50a3904ef800d0"; - sha256 = "13wd7s2kff3s0bz5mi0m2zcz1r8mwnwhd944gxymzkwij71lhasn"; - }; - } - { - goPackagePath = "github.com/kovetskiy/godocs"; - fetch = { - type = "git"; - url = "https://github.com/kovetskiy/godocs"; - rev = "2d9428f80f3442e07f67daf7ba378cd0ff6cfe24"; - sha256 = "128dlvxqk31crzl9p3ps0nir724cjzxv4lxpgdvsir0wvfp8f83j"; - }; - } - { - goPackagePath = "github.com/kovetskiy/lorg"; - fetch = { - type = "git"; - url = "https://github.com/kovetskiy/lorg"; - rev = "9c6042b7edb0c491dd0722fad91e2b5e833d6b43"; - sha256 = "0j1cm7mni47vraxnyigc55cq0yxw8zdyjmrq2c7vnm5s4kiia8pi"; - }; - } - { - goPackagePath = "github.com/kovetskiy/spinner-go"; - fetch = { - type = "git"; - url = "https://github.com/kovetskiy/spinner-go"; - rev = "00597fd24fe0d8079821b68f71d73b0661401752"; - sha256 = "19qcpnvs61fsk7xgcj5b6s3zksnkc5rk9n5hx73v9ya7m2k7xr2n"; - }; - } - { - goPackagePath = "github.com/mattn/go-runewidth"; - fetch = { - type = "git"; - url = "https://github.com/mattn/go-runewidth"; - rev = "703b5e6b11ae25aeb2af9ebb5d5fdf8fa2575211"; - sha256 = "0znpyz71gajx3g0j2zp63nhjj2c07g16885vxv4ykwnrfmzbgk4w"; - }; - } - { - goPackagePath = "github.com/olekukonko/tablewriter"; - fetch = { - type = "git"; - url = "https://github.com/olekukonko/tablewriter"; - rev = "cc27d85e17cec9768d2ac401ea5d619a9628f16d"; - sha256 = "1y3pkvypkxjrhlnsv8lcyd0c2q8mn5asfny2zi9j2vs77s5bd9qm"; - }; - } - { - goPackagePath = "github.com/reconquest/karma-go"; - fetch = { - type = "git"; - url = "https://github.com/reconquest/karma-go"; - rev = "1094651bd246b1685f7b368e099aba6fca9efd8f"; - sha256 = "0jiayzxwp0h7skg86q58rh58m2imdg3ng2vzpc2bxiz67lzcpk3r"; - }; - } - { - goPackagePath = "github.com/simplereach/timeutils"; - fetch = { - type = "git"; - url = "https://github.com/simplereach/timeutils"; - rev = "1a719258b86a08630289b86902ab16817ba641e9"; - sha256 = "08mf2j0dk07c9p279ydbrjxbjf113azmq0x8vhf7jvldcgjpw3m6"; - }; - } - { - goPackagePath = "github.com/zazab/zhash"; - fetch = { - type = "git"; - url = "https://github.com/zazab/zhash"; - rev = "ad45b89afe7af57319ca32f174e4dabeb00c44e4"; - sha256 = "16b6f70qwfyg0zvbpk0yj5jx4cv2ggkyiqc5nk8n0165z46i62hs"; - }; - } - { - goPackagePath = "gopkg.in/mgo.v2"; - fetch = { - type = "git"; - url = "https://gopkg.in/mgo.v2"; - rev = "9856a29383ce1c59f308dd1cf0363a79b5bef6b5"; - sha256 = "1gfbcmvpwwf1lydxj3g42wv2g9w3pf0y02igqk4f4f21h02sazkw"; - }; - } - { - goPackagePath = "gopkg.in/yaml.v2"; - fetch = { - type = "git"; - url = "https://gopkg.in/yaml.v2"; - rev = "51d6538a90f86fe93ac480b35f37b2be17fef232"; - sha256 = "01wj12jzsdqlnidpyjssmj0r4yavlqy7dwrg7adqd8dicjc4ncsa"; - }; - } -] diff --git a/pkgs/tools/networking/argus-clients/default.nix b/pkgs/tools/networking/argus-clients/default.nix index cd935a5f5d7..30367eb14e4 100644 --- a/pkgs/tools/networking/argus-clients/default.nix +++ b/pkgs/tools/networking/argus-clients/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "argus-clients"; - version = "3.0.8.2"; + version = "3.0.8.3"; src = fetchurl { url = "http://qosient.com/argus/src/${pname}-${version}.tar.gz"; - sha256 = "1c9vj6ma00gqq9h92fg71sxcsjzz912166sdg90ahvnmvmh3l1rj"; + sha256 = "sha256-uNTvi6zbrYHAivQMPkhlNCoqRW9GOkgKvCf3mInds80="; }; NIX_CFLAGS_COMPILE = [ "-I${libtirpc.dev}/include/tirpc" ]; diff --git a/pkgs/tools/networking/aria2/default.nix b/pkgs/tools/networking/aria2/default.nix index 8fabea35ba9..bb70c66b320 100644 --- a/pkgs/tools/networking/aria2/default.nix +++ b/pkgs/tools/networking/aria2/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchpatch, fetchFromGitHub, pkg-config, autoreconfHook +{ lib, stdenv, fetchFromGitHub, pkg-config, autoreconfHook , openssl, c-ares, libxml2, sqlite, zlib, libssh2 , cppunit, sphinx , Security @@ -26,6 +26,7 @@ stdenv.mkDerivation rec { configureFlags = [ "--with-ca-bundle=/etc/ssl/certs/ca-certificates.crt" "--enable-libaria2" + "--with-bashcompletiondir=${placeholder "bin"}/share/bash-completion/completions" ]; prePatch = '' diff --git a/pkgs/tools/networking/babeld/default.nix b/pkgs/tools/networking/babeld/default.nix index cde173ba305..28caace1028 100644 --- a/pkgs/tools/networking/babeld/default.nix +++ b/pkgs/tools/networking/babeld/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "babeld"; - version = "1.11"; + version = "1.12.1"; src = fetchurl { url = "https://www.irif.fr/~jch/software/files/${pname}-${version}.tar.gz"; - sha256 = "sha256-mTFa6vLqIH8XfBaFX/o0/DVK8bWYjAcODy/KOg1ND6U="; + sha256 = "sha256-mrWdesdB82MN8j+cO2fGApTYs0q2IjmPm4l3OoeOyx4="; }; preBuild = '' diff --git a/pkgs/tools/networking/boundary/default.nix b/pkgs/tools/networking/boundary/default.nix index c86c9c5fd68..a03bedcabbf 100644 --- a/pkgs/tools/networking/boundary/default.nix +++ b/pkgs/tools/networking/boundary/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "boundary"; - version = "0.7.6"; + version = "0.8.0"; src = let @@ -15,10 +15,10 @@ stdenv.mkDerivation rec { aarch64-darwin = "darwin_arm64"; }; sha256 = selectSystem { - x86_64-linux = "sha256-nsc8S63OUEo9db/hs9oA53Lk+amIsxB/O4TJCs4zdNw="; - aarch64-linux = "sha256-KttqYuF7xC88L49f7JKKr77FbKBihptoBIoemgFInm0="; - x86_64-darwin = "sha256-ov4CtiWsOU/AWfAo7x99RshW6+eU9lFD5ypo6MKyPM0="; - aarch64-darwin = "sha256-3E9fv8BSu7XXIwRmTrDECLNQKdoeUqitKbsTrXs+tTE="; + x86_64-linux = "sha256-cZ41+VwbTQ/X/A0+OL1ZVXVv3eu90H5kMLiHqyc3688="; + aarch64-linux = "sha256-2svJx3rp0swyuXz3WCLRvDTRkweLMVIKrgYekcG8LdE="; + x86_64-darwin = "sha256-zkSESscsapyoMlFdaTzmooOEjUTte8MDNIGVhy9knzc="; + aarch64-darwin = "sha256-A7KNhTWuLjNaO2GyldCDquRur0i5KoXl6GZYQIqt0cI="; }; in fetchzip { diff --git a/pkgs/tools/networking/brook/default.nix b/pkgs/tools/networking/brook/default.nix index 51ace3ac9a0..e0e37e99ac7 100644 --- a/pkgs/tools/networking/brook/default.nix +++ b/pkgs/tools/networking/brook/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "brook"; - version = "20220501"; + version = "20220515"; src = fetchFromGitHub { owner = "txthinking"; repo = pname; rev = "v${version}"; - sha256 = "sha256-JAlSqwhWsF8PTAyn2W1BCDO50eSBq7ukwl0dzzmK1zU="; + sha256 = "sha256-olYlAuIcK34nNXbfiPT4+u0L3xcxBMMty72FjSeuNqg="; }; vendorSha256 = "sha256-ic5QYRVElEuH4D29PXgTzMHU0KjrxDqcdfg7Kd37/YU="; diff --git a/pkgs/tools/networking/cdpr/default.nix b/pkgs/tools/networking/cdpr/default.nix index 0b92fd7aa45..a3f821bdbb3 100644 --- a/pkgs/tools/networking/cdpr/default.nix +++ b/pkgs/tools/networking/cdpr/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, libpcap }: +{ lib, stdenv, fetchurl, fetchpatch, libpcap }: stdenv.mkDerivation rec { pname = "cdpr"; @@ -8,6 +8,15 @@ stdenv.mkDerivation rec { url = "mirror://sourceforge/${pname}/${pname}/${version}/${pname}-${version}.tgz"; sha256 = "1idyvyafkk0ifcbi7mc65b60qia6hpsdb6s66j4ggqp7if6vblrj"; }; + patches = [ + # Pull fix pending upstream inclusion for gcc-10 compatibility: + # https://sourceforge.net/p/cdpr/bugs/3/ + (fetchurl { + name = "fno-common"; + url = "https://sourceforge.net/p/cdpr/bugs/3/attachment/0001-cdpr-fix-build-on-gcc-10-fno-common.patch"; + sha256 = "023cvkpc4ry1pbjd91kkwj4af3hia0layk3fp8q40vh6mbr14pnp"; + }) + ]; postPatch = '' substituteInPlace Makefile --replace 'gcc' '"$$CC"' diff --git a/pkgs/tools/networking/croc/default.nix b/pkgs/tools/networking/croc/default.nix index b6e5150fe8e..78116cb2255 100644 --- a/pkgs/tools/networking/croc/default.nix +++ b/pkgs/tools/networking/croc/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "croc"; - version = "9.5.5"; + version = "9.5.6"; src = fetchFromGitHub { owner = "schollz"; repo = pname; rev = "v${version}"; - sha256 = "sha256-YBg7mY8po7yVrSX1GaoI9/E3zFbdWWQEVCuR0H0DgJ4="; + sha256 = "sha256-VXbrwUf43qvXd+/GXNA+Wkt4E5EM4+1V0wPj3JONzlU="; }; - vendorSha256 = "sha256-kaqTJMRbLSF1zy6qXqdOSzmbcV35rzrou4X0WzoQoGc="; + vendorSha256 = "sha256-45rQHG5Std7m7Xu8OEFfjdG6RyriM4yAPzJl7M2lPW8="; subPackages = [ "." ]; diff --git a/pkgs/tools/networking/curl/7.83.1-quiche-support-ca-fallback.patch b/pkgs/tools/networking/curl/7.83.1-quiche-support-ca-fallback.patch new file mode 100644 index 00000000000..c68f9f1d84d --- /dev/null +++ b/pkgs/tools/networking/curl/7.83.1-quiche-support-ca-fallback.patch @@ -0,0 +1,51 @@ +diff --git a/lib/vquic/quiche.c b/lib/vquic/quiche.c +index bfdc966a85ea..e4bea4d677be 100644 +--- a/lib/vquic/quiche.c ++++ b/lib/vquic/quiche.c +@@ -201,23 +201,31 @@ static SSL_CTX *quic_ssl_ctx(struct Curl_easy *data) + + { + struct connectdata *conn = data->conn; +- const char * const ssl_cafile = conn->ssl_config.CAfile; +- const char * const ssl_capath = conn->ssl_config.CApath; +- + if(conn->ssl_config.verifypeer) { +- SSL_CTX_set_verify(ssl_ctx, SSL_VERIFY_PEER, NULL); +- /* tell OpenSSL where to find CA certificates that are used to verify +- the server's certificate. */ +- if(!SSL_CTX_load_verify_locations(ssl_ctx, ssl_cafile, ssl_capath)) { +- /* Fail if we insist on successfully verifying the server. */ +- failf(data, "error setting certificate verify locations:" +- " CAfile: %s CApath: %s", +- ssl_cafile ? ssl_cafile : "none", +- ssl_capath ? ssl_capath : "none"); +- return NULL; ++ const char * const ssl_cafile = conn->ssl_config.CAfile; ++ const char * const ssl_capath = conn->ssl_config.CApath; ++ if(ssl_cafile || ssl_capath) { ++ SSL_CTX_set_verify(ssl_ctx, SSL_VERIFY_PEER, NULL); ++ /* tell OpenSSL where to find CA certificates that are used to verify ++ the server's certificate. */ ++ if(!SSL_CTX_load_verify_locations(ssl_ctx, ssl_cafile, ssl_capath)) { ++ /* Fail if we insist on successfully verifying the server. */ ++ failf(data, "error setting certificate verify locations:" ++ " CAfile: %s CApath: %s", ++ ssl_cafile ? ssl_cafile : "none", ++ ssl_capath ? ssl_capath : "none"); ++ return NULL; ++ } ++ infof(data, " CAfile: %s", ssl_cafile ? ssl_cafile : "none"); ++ infof(data, " CApath: %s", ssl_capath ? ssl_capath : "none"); + } +- infof(data, " CAfile: %s", ssl_cafile ? ssl_cafile : "none"); +- infof(data, " CApath: %s", ssl_capath ? ssl_capath : "none"); ++#ifdef CURL_CA_FALLBACK ++ else { ++ /* verifying the peer without any CA certificates won't work so ++ use openssl's built-in default as fallback */ ++ SSL_CTX_set_default_verify_paths(ssl_ctx); ++ } ++#endif + } + } + return ssl_ctx; diff --git a/pkgs/tools/networking/curl/default.nix b/pkgs/tools/networking/curl/default.nix index 02ae74bd633..66d2dfcdb9a 100644 --- a/pkgs/tools/networking/curl/default.nix +++ b/pkgs/tools/networking/curl/default.nix @@ -62,18 +62,21 @@ assert zstdSupport -> zstd != null; stdenv.mkDerivation rec { pname = "curl"; - version = "7.83.0"; + version = "7.83.1"; src = fetchurl { urls = [ "https://curl.haxx.se/download/${pname}-${version}.tar.bz2" "https://github.com/curl/curl/releases/download/${lib.replaceStrings ["."] ["_"] pname}-${version}/${pname}-${version}.tar.bz2" ]; - sha256 = "sha256-JHx+x1IcQljmVjTlKScNIU/jKWmXHMy3KEXnqkaDH5Y="; + sha256 = "sha256-9Tmjb7RKgmDsXZd+Tg290u7intkPztqpvDyfeKETv/A="; }; patches = [ ./7.79.1-darwin-no-systemconfiguration.patch + # quiche: support ca-fallback + # https://github.com/curl/curl/commit/fdb5e21b4dd171a96cf7c002ee77bb08f8e58021 + ./7.83.1-quiche-support-ca-fallback.patch ]; outputs = [ "bin" "dev" "out" "man" "devdoc" ]; @@ -141,15 +144,24 @@ stdenv.mkDerivation rec { ] ++ lib.optionals stdenv.isDarwin [ # Disable default CA bundle, use NIX_SSL_CERT_FILE or fallback to nss-cacert from the default profile. # Without this curl might detect /etc/ssl/cert.pem at build time on macOS, causing curl to ignore NIX_SSL_CERT_FILE. - # https://github.com/curl/curl/issues/8696 - fallback is not supported by HTTP3 - (if http3Support then "--with-ca-bundle=/etc/ssl/certs/ca-certificates.crt" else "--without-ca-bundle") + "--without-ca-bundle" "--without-ca-path" ]; CXX = "${stdenv.cc.targetPrefix}c++"; CXXCPP = "${stdenv.cc.targetPrefix}c++ -E"; - doCheck = false; # expensive, fails + doCheck = true; + preCheck = '' + patchShebangs tests/ + '' + lib.optionalString stdenv.isDarwin '' + # bad interaction with sandbox if enabled? + rm tests/data/test1453 + rm tests/data/test1086 + '' + lib.optionalString stdenv.hostPlatform.isMusl '' + # different resolving behaviour? + rm tests/data/test1592 + ''; postInstall = '' moveToOutput bin/curl-config "$dev" diff --git a/pkgs/tools/networking/dd-agent/datadog-agent.nix b/pkgs/tools/networking/dd-agent/datadog-agent.nix index 2b87678f2ca..ac35da0bbd3 100644 --- a/pkgs/tools/networking/dd-agent/datadog-agent.nix +++ b/pkgs/tools/networking/dd-agent/datadog-agent.nix @@ -10,15 +10,15 @@ let in buildGoModule rec { pname = "datadog-agent"; - version = "7.35.0"; + version = "7.35.1"; src = fetchFromGitHub { inherit owner repo; rev = version; - sha256 = "sha256-N/IiixWOLLzFXqTePVVdaNtUYE3ZRk0NlXkaqNQm6ms="; + sha256 = "sha256-TvkPw67HBeRkKbbA3O/JVBkEUds36eW4UwKnRvPwAXc="; }; - vendorSha256 = "sha256-3Sg8A3uVt6/aVih042P41CzfkmdryM4WSHyWQK0qhOs="; + vendorSha256 = "sha256-RmHxjJAMS+2MVoBJMD6FTQLhxDgzH3jtp87474i9ho8="; subPackages = [ "cmd/agent" diff --git a/pkgs/tools/networking/email/default.nix b/pkgs/tools/networking/email/default.nix index 2a6faa9c173..8848068d0de 100644 --- a/pkgs/tools/networking/email/default.nix +++ b/pkgs/tools/networking/email/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchFromGitHub, openssl }: +{ stdenv, lib, fetchFromGitHub, fetchpatch, openssl }: let eMailSrc = fetchFromGitHub { @@ -24,6 +24,16 @@ stdenv.mkDerivation { version = "unstable-2016-01-31"; src = eMailSrc; + patches = [ + # Pul patch pending upstream inclusion for -fno-common toolchain support: + # https://github.com/deanproxy/eMail/pull/61 + (fetchpatch { + name = "fno-common.patch"; + url = "https://github.com/deanproxy/eMail/commit/c3c1e52132832be0e51daa6e0037d5bb79a17751.patch"; + sha256 = "17ndrb65g0v4y521333h4244419s8nncm0yx2jwv12sf0dl6gy8i"; + }) + ]; + buildInputs = [ openssl ]; unpackPhase = '' diff --git a/pkgs/tools/networking/goreplay/default.nix b/pkgs/tools/networking/goreplay/default.nix index 14d0a16366b..dab5bee882c 100644 --- a/pkgs/tools/networking/goreplay/default.nix +++ b/pkgs/tools/networking/goreplay/default.nix @@ -1,21 +1,24 @@ -{ lib, buildGoPackage, fetchFromGitHub, libpcap }: +{ lib, buildGoModule, fetchFromGitHub, libpcap }: -buildGoPackage rec { +buildGoModule rec { pname = "goreplay"; - version = "1.1.0"; - rev = "v${version}"; - - goPackagePath = "github.com/buger/goreplay"; + version = "1.3.3"; src = fetchFromGitHub { - inherit rev; - owner = "buger"; - repo = "goreplay"; - sha256 = "07nsrx5hwmk6l8bqp48gqk40i9bxf0g4fbmpqbngx6j5f7lpbk2n"; + owner = "buger"; + repo = "goreplay"; + rev = version; + sha256 = "sha256-FiY9e5FgpPu+K8eoO8TsU3xSaSoPPDxYEu0oi/S8Q1w="; }; + vendorSha256 = "sha256-jDMAtcq3ZowFdky5BdTkVNxq4ltkhklr76nXYJgGALg="; + + ldflags = [ "-s" "-w" ]; + buildInputs = [ libpcap ]; + doCheck = false; + meta = { homepage = "https://github.com/buger/goreplay"; license = lib.licenses.lgpl3Only; diff --git a/pkgs/tools/networking/hping/default.nix b/pkgs/tools/networking/hping/default.nix index 97b45c64ee2..33663a44d2a 100644 --- a/pkgs/tools/networking/hping/default.nix +++ b/pkgs/tools/networking/hping/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, libpcap, withTcl ? true, tcl }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, libpcap, withTcl ? true, tcl }: stdenv.mkDerivation rec { pname = "hping"; @@ -10,6 +10,15 @@ stdenv.mkDerivation rec { rev = "3547c7691742c6eaa31f8402e0ccbb81387c1b99"; # there are no tags/releases sha256 = "0y0n1ybij3yg9lfgzcwfmjz1sjg913zcqrv391xx83dm0j80sdpb"; }; + patches = [ + # Pull patch pending upstream inclusion for -fno-common toolchain + # support: https://github.com/antirez/hping/pull/64 + (fetchpatch { + name = "fno-common.patch"; + url = "https://github.com/antirez/hping/pull/64/commits/d057b9309aec3a5a53aaee1ac3451a8a5b71b4e8.patch"; + sha256 = "0bqr7kdlziijja588ipj8g5hv2109wq01c6x2qadbhjfnsps1b6l"; + }) + ]; buildInputs = [ libpcap ] ++ lib.optional withTcl tcl; diff --git a/pkgs/tools/networking/iftop/default.nix b/pkgs/tools/networking/iftop/default.nix index abdb7d05b28..137ce03b252 100644 --- a/pkgs/tools/networking/iftop/default.nix +++ b/pkgs/tools/networking/iftop/default.nix @@ -19,6 +19,12 @@ stdenv.mkDerivation rec { buildInputs = [ncurses libpcap]; + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: tui.o:/build/iftop-1.0pre4/ui_common.h:41: multiple definition of `service_hash'; + # iftop.o:/build/iftop-1.0pre4/ui_common.h:41: first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + passthru.tests = { inherit (nixosTests) iftop; }; meta = with lib; { diff --git a/pkgs/tools/networking/iouyap/default.nix b/pkgs/tools/networking/iouyap/default.nix index 2367261b522..0b3c8007af6 100644 --- a/pkgs/tools/networking/iouyap/default.nix +++ b/pkgs/tools/networking/iouyap/default.nix @@ -13,6 +13,11 @@ stdenv.mkDerivation rec { buildInputs = [ bison flex ]; + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: netmap.o:(.bss+0x20): multiple definition of `sizecheck'; iouyap.o:(.bss+0x20): first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + installPhase = '' install -D -m555 iouyap $out/bin/iouyap; ''; diff --git a/pkgs/tools/networking/lsh/default.nix b/pkgs/tools/networking/lsh/default.nix index 5893579b1a7..07f0524d5f4 100644 --- a/pkgs/tools/networking/lsh/default.nix +++ b/pkgs/tools/networking/lsh/default.nix @@ -31,7 +31,12 @@ stdenv.mkDerivation rec { export lsh_cv_sys_unix98_ptys=yes ''; - NIX_CFLAGS_COMPILE = "-std=gnu90"; + # -fcommon: workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: liblsh.a(unix_user.o):/build/lsh-2.0.4/src/server_userauth.h:108: multiple definition of + # `server_userauth_none_preauth'; lshd.o:/build/lsh-2.0.4/src/server_userauth.h:108: first defined here + # Should be present in upcoming 2.1 release. + NIX_CFLAGS_COMPILE = "-std=gnu90 -fcommon"; buildInputs = [ gperf guile gmp zlib liboop readline gnum4 pam ]; diff --git a/pkgs/tools/networking/minio-client/default.nix b/pkgs/tools/networking/minio-client/default.nix index b0a689db7bf..9ca4dfa27b3 100644 --- a/pkgs/tools/networking/minio-client/default.nix +++ b/pkgs/tools/networking/minio-client/default.nix @@ -1,17 +1,17 @@ -{ lib, buildGoModule, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub, nixosTests }: buildGoModule rec { pname = "minio-client"; - version = "2022-03-17T20-25-06Z"; + version = "2022-05-09T04-08-26Z"; src = fetchFromGitHub { owner = "minio"; repo = "mc"; rev = "RELEASE.${version}"; - sha256 = "sha256-+MfRosEyIaQ5RndpAeK5AXm8EHX2ND7VJcr1NVFs5TI="; + sha256 = "sha256-a7zpvumsMijMmJthg4EZgOUymDC4GrbDjAwN4sXxE6g="; }; - vendorSha256 = "sha256-Wdw9mZ3UupoJ4yDwS4f3mOmCn+7TvHmx4aRu+96pHM4="; + vendorSha256 = "sha256-OkcQxTDKhuFCjNs5TNBBMde+M6vCfPSR5IuVbCaqWJg="; subPackages = [ "." ]; @@ -26,6 +26,8 @@ buildGoModule rec { $out/bin/mc --version | grep ${version} > /dev/null ''; + passthru.tests.minio = nixosTests.minio; + meta = with lib; { homepage = "https://github.com/minio/mc"; description = "A replacement for ls, cp, mkdir, diff and rsync commands for filesystems and object storage"; diff --git a/pkgs/tools/networking/mozillavpn/default.nix b/pkgs/tools/networking/mozillavpn/default.nix index ab03c61a164..8fe6e6169fd 100644 --- a/pkgs/tools/networking/mozillavpn/default.nix +++ b/pkgs/tools/networking/mozillavpn/default.nix @@ -118,7 +118,11 @@ stdenv.mkDerivation { python3 scripts/utils/import_languages.py --qt_path '${lib.getDev qttools}/bin' ''; - qmakeFlags = [ "USRPATH=$(out)" "ETCPATH=$(out)/etc" ]; + qmakeFlags = [ + "USRPATH=$(out)" + "ETCPATH=$(out)/etc" + "CONFIG-=debug" # https://github.com/mozilla-mobile/mozilla-vpn-client/pull/3539 + ]; qtWrapperArgs = [ "--prefix" "PATH" ":" (lib.makeBinPath [ wireguard-tools ]) ]; diff --git a/pkgs/tools/networking/networkmanager/default.nix b/pkgs/tools/networking/networkmanager/default.nix index 86195ba8692..5dc59f9590f 100644 --- a/pkgs/tools/networking/networkmanager/default.nix +++ b/pkgs/tools/networking/networkmanager/default.nix @@ -54,11 +54,11 @@ let in stdenv.mkDerivation rec { pname = "networkmanager"; - version = "1.36.4"; + version = "1.38.0"; src = fetchurl { url = "mirror://gnome/sources/NetworkManager/${lib.versions.majorMinor version}/NetworkManager-${version}.tar.xz"; - sha256 = "YTBOk33ZJkcdVnFb3t57q3zKyCc1bmfycA00MxfNPFk="; + sha256 = "sha256-gqTPB93+sIFnh7Z8D1BYrmxQ1iWcCwVBok41FWBisu8="; }; outputs = [ "out" "dev" "devdoc" "man" "doc" ]; diff --git a/pkgs/tools/networking/networkmanager/l2tp/default.nix b/pkgs/tools/networking/networkmanager/l2tp/default.nix index 889f1565959..11a414a8a6a 100644 --- a/pkgs/tools/networking/networkmanager/l2tp/default.nix +++ b/pkgs/tools/networking/networkmanager/l2tp/default.nix @@ -1,18 +1,34 @@ -{ lib, stdenv, substituteAll, fetchFromGitHub, autoreconfHook, libtool, intltool, pkg-config -, file -, gtk3, networkmanager, ppp, xl2tpd, strongswan, libsecret -, withGnome ? true, libnma, glib }: +{ stdenv +, lib +, substituteAll +, fetchFromGitHub +, autoreconfHook +, pkg-config +, gtk3 +, gtk4 +, networkmanager +, ppp +, xl2tpd +, strongswan +, libsecret +, withGnome ? true +, libnma +, libnma-gtk4 +, glib +, openssl +, nss +}: stdenv.mkDerivation rec { name = "${pname}${if withGnome then "-gnome" else ""}-${version}"; pname = "NetworkManager-l2tp"; - version = "1.2.12"; + version = "1.20.4"; src = fetchFromGitHub { owner = "nm-l2tp"; repo = "network-manager-l2tp"; rev = version; - sha256 = "0cq07kvlm98s8a7l4a3zmqnif8x3307kv7n645zx3f1r7x72b8m4"; + sha256 = "VoqPjMQILBYemRE5VD/XwhWi9zL9QxxHZJ2JKtGglFo="; }; patches = [ @@ -22,20 +38,29 @@ stdenv.mkDerivation rec { }) ]; - buildInputs = [ networkmanager ppp glib ] - ++ lib.optionals withGnome [ gtk3 libsecret libnma ]; - - nativeBuildInputs = [ autoreconfHook libtool intltool pkg-config file ]; + nativeBuildInputs = [ + autoreconfHook + pkg-config + ]; - preConfigure = '' - intltoolize -f - ''; + buildInputs = [ + networkmanager + ppp + glib + openssl + nss + ] ++ lib.optionals withGnome [ + gtk3 + gtk4 + libsecret + libnma + libnma-gtk4 + ]; configureFlags = [ - "--without-libnm-glib" "--with-gnome=${if withGnome then "yes" else "no"}" + "--with-gtk4=${if withGnome then "yes" else "no"}" "--localstatedir=/var" - "--sysconfdir=$(out)/etc" "--enable-absolute-paths" ]; @@ -49,7 +74,7 @@ stdenv.mkDerivation rec { description = "L2TP plugin for NetworkManager"; inherit (networkmanager.meta) platforms; homepage = "https://github.com/nm-l2tp/network-manager-l2tp"; - license = licenses.gpl2; + license = licenses.gpl2Plus; maintainers = with maintainers; [ abbradar obadz ]; }; } diff --git a/pkgs/tools/networking/networkmanager/l2tp/fix-paths.patch b/pkgs/tools/networking/networkmanager/l2tp/fix-paths.patch index 531672c3936..d9ee0dd4997 100644 --- a/pkgs/tools/networking/networkmanager/l2tp/fix-paths.patch +++ b/pkgs/tools/networking/networkmanager/l2tp/fix-paths.patch @@ -1,22 +1,22 @@ diff --git a/shared/utils.c b/shared/utils.c -index c978a1f..d2c36cd 100644 +index 453e277..28716a5 100644 --- a/shared/utils.c +++ b/shared/utils.c -@@ -52,7 +52,7 @@ nm_find_ipsec (void) +@@ -39,7 +39,7 @@ check_ipsec_daemon(const char *path) + const char * + nm_find_ipsec(void) { - static const char *ipsec_binary_paths[] = - { -- "/sbin/ipsec", -+ "@strongswan@/bin/ipsec", - "/usr/sbin/ipsec", - "/usr/local/sbin/ipsec", - "/sbin/strongswan", -@@ -77,7 +77,7 @@ nm_find_l2tpd (void) - { - static const char *l2tp_binary_paths[] = - { -- "/sbin/xl2tpd", -+ "@xl2tpd@/bin/xl2tpd", - "/usr/sbin/xl2tpd", - "/usr/local/sbin/xl2tpd", - NULL +- static const char *ipsec_binary_paths[] = {"/usr/bin/ipsec", ++ static const char *ipsec_binary_paths[] = {"@strongswan@/bin/ipsec", + "/sbin/ipsec", + "/usr/sbin/ipsec", + "/usr/local/sbin/ipsec", +@@ -70,7 +70,7 @@ nm_find_l2tpd(NML2tpL2tpDaemon *l2tp_daemon) + "/usr/local/sbin/kl2tpd", + NULL}; + +- static const char *xl2tp_binary_paths[] = {"/usr/bin/xl2tpd", ++ static const char *xl2tp_binary_paths[] = {"@xl2tpd@/bin/xl2tpd", + "/sbin/xl2tpd", + "/usr/sbin/xl2tpd", + "/usr/local/sbin/xl2tpd", diff --git a/pkgs/tools/networking/networkmanager/strongswan/default.nix b/pkgs/tools/networking/networkmanager/strongswan/default.nix index be0dcf234ff..e080ca17db1 100644 --- a/pkgs/tools/networking/networkmanager/strongswan/default.nix +++ b/pkgs/tools/networking/networkmanager/strongswan/default.nix @@ -1,35 +1,55 @@ -{ lib, stdenv, fetchurl, intltool, pkg-config, networkmanager, strongswanNM -, gtk3, gnome, libsecret, libnma }: +{ stdenv +, lib +, fetchurl +, intltool +, pkg-config +, networkmanager +, strongswanNM +, gtk3 +, gtk4 +, gnome +, libsecret +, libnma +, libnma-gtk4 +}: stdenv.mkDerivation rec { pname = "NetworkManager-strongswan"; - version = "1.5.2"; + version = "1.6.0"; src = fetchurl { url = "https://download.strongswan.org/NetworkManager/${pname}-${version}.tar.bz2"; - sha256 = "0sc1yzlxjfvl58hjjw99bchqc4061i3apw254z61v22k4sajnif8"; + sha256 = "bbyA9qCboM9hBKMXhJWXgEFN13Fl4pY6zWZXwowlRMI="; }; - buildInputs = [ networkmanager strongswanNM libsecret gtk3 libnma ]; - - nativeBuildInputs = [ intltool pkg-config ]; + nativeBuildInputs = [ + intltool + pkg-config + ]; - # glib-2.62 deprecations - NIX_CFLAGS_COMPILE = "-DGLIB_DISABLE_DEPRECATION_WARNINGS"; + buildInputs = [ + networkmanager + strongswanNM + libsecret + gtk3 + gtk4 + libnma + libnma-gtk4 + ]; configureFlags = [ - "--without-libnm-glib" "--with-charon=${strongswanNM}/libexec/ipsec/charon-nm" - "--with-nm-libexecdir=$(out)/libexec" - "--with-nm-plugindir=$(out)/lib/NetworkManager" + "--with-nm-libexecdir=${placeholder "out"}/libexec" + "--with-nm-plugindir=${placeholder "out"}/lib/NetworkManager" + "--with-gtk4" ]; + PKG_CONFIG_LIBNM_VPNSERVICEDIR = "${placeholder "out"}/lib/NetworkManager/VPN"; + passthru = { networkManagerPlugin = "VPN/nm-strongswan-service.name"; }; - PKG_CONFIG_LIBNM_VPNSERVICEDIR = "$(out)/lib/NetworkManager/VPN"; - meta = with lib; { description = "NetworkManager's strongswan plugin"; inherit (networkmanager.meta) platforms; diff --git a/pkgs/tools/networking/proxychains-ng/default.nix b/pkgs/tools/networking/proxychains-ng/default.nix index 35a6c7d7f87..12b3932b8f9 100644 --- a/pkgs/tools/networking/proxychains-ng/default.nix +++ b/pkgs/tools/networking/proxychains-ng/default.nix @@ -1,6 +1,7 @@ { lib , stdenv , fetchFromGitHub +, fetchpatch }: stdenv.mkDerivation rec { @@ -14,6 +15,28 @@ stdenv.mkDerivation rec { sha256 = "sha256-uu/zN6W0ue526/3a9QeYg6J4HLaovZJVOYXksjouYok="; }; + patches = [ + # zsh completion + (fetchpatch { + url = "https://github.com/rofl0r/proxychains-ng/commit/04023d3811d8ee34b498b429bac7a871045de59c.patch"; + sha256 = "sha256-Xcg2kmAhj/OJn/RKJAxb9MOJNJQY7FXmxEIzQ5dvabo="; + }) + (fetchpatch { + url = "https://github.com/rofl0r/proxychains-ng/commit/9b42da71f4df7b783cf07a58ffa095e293c43380.patch"; + sha256 = "sha256-tYv9XP51WtsjaoklwQk3D/MQceoOvtdMwBraECt6AXQ="; + }) + ]; + + installFlags = [ + "install-config" + # TODO: check on next update if that works and remove postInstall + # "install-zsh-completion" + ]; + + postInstall = '' + ./tools/install.sh -D -m 644 completions/_proxychains $out/share/zsh/site_functions/_proxychains4 + ''; + meta = with lib; { description = "A preloader which hooks calls to sockets in dynamically linked programs and redirects it through one or more socks/http proxies"; homepage = "https://github.com/rofl0r/proxychains-ng"; diff --git a/pkgs/tools/networking/proxychains/default.nix b/pkgs/tools/networking/proxychains/default.nix index b93c6ae12cf..df692f372c8 100644 --- a/pkgs/tools/networking/proxychains/default.nix +++ b/pkgs/tools/networking/proxychains/default.nix @@ -19,6 +19,10 @@ stdenv.mkDerivation rec { substituteInPlace Makefile --replace "-Werror" "-Werror -Wno-stringop-truncation" ''; + installFlags = [ + "install-config" + ]; + meta = with lib; { description = "Proxifier for SOCKS proxies"; homepage = "http://proxychains.sourceforge.net"; diff --git a/pkgs/tools/networking/redli/default.nix b/pkgs/tools/networking/redli/default.nix new file mode 100644 index 00000000000..d6a9f6f8709 --- /dev/null +++ b/pkgs/tools/networking/redli/default.nix @@ -0,0 +1,22 @@ +{ buildGoModule, fetchFromGitHub, lib }: + +buildGoModule rec { + pname = "redli"; + version = "0.5.2"; + + src = fetchFromGitHub { + owner = "IBM-Cloud"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-bR02R9M3041oNUEQId1zgAxMNPyXXQNAYEyE/XIDdPE="; + }; + + vendorSha256 = null; + + meta = with lib; { + description = "A humane alternative to the Redis-cli and TLS"; + homepage = "https://github.com/IBM-Cloud/redli"; + license = licenses.asl20; + maintainers = with maintainers; [ tchekda ]; + }; +} diff --git a/pkgs/tools/networking/rp-pppoe/default.nix b/pkgs/tools/networking/rp-pppoe/default.nix index 572625651e9..e58c2576681 100644 --- a/pkgs/tools/networking/rp-pppoe/default.nix +++ b/pkgs/tools/networking/rp-pppoe/default.nix @@ -16,11 +16,16 @@ stdenv.mkDerivation rec { cd src export PPPD=${ppp}/sbin/pppd ''; + + configureFlags = lib.optionals (stdenv.buildPlatform != stdenv.hostPlatform) [ "rpppoe_cv_pack_bitfields=rev" ]; + postConfigure = '' sed -i Makefile -e 's@DESTDIR)/etc/ppp@out)/etc/ppp@' sed -i Makefile -e 's@PPPOESERVER_PPPD_OPTIONS=@&$(out)@' ''; + makeFlags = [ "AR:=$(AR)" ]; + meta = with lib; { description = "Roaring Penguin Point-to-Point over Ethernet tool"; platforms = platforms.linux; diff --git a/pkgs/tools/networking/ua/default.nix b/pkgs/tools/networking/ua/default.nix index 4190e810214..e9c7c34e9b5 100644 --- a/pkgs/tools/networking/ua/default.nix +++ b/pkgs/tools/networking/ua/default.nix @@ -1,26 +1,23 @@ -{ lib, buildGoPackage, fetchFromGitHub -, pkg-config -, glib, libxml2 -}: +{ lib, buildGoModule, fetchFromGitHub, pkg-config, glib, libxml2 }: -buildGoPackage rec { +buildGoModule rec { pname = "ua"; - version = "unstable-2017-02-24"; - - goPackagePath = "github.com/sloonz/ua"; + version = "unstable-2021-12-18"; src = fetchFromGitHub { owner = "sloonz"; repo = "ua"; - rev = "325dab92c60e0f028e55060f0c288aa70905fb17"; - sha256 = "sha256-LlpxWwKO+gZltkmpQyWaG+qhZFnmETFKIqlOxOzEohA="; + rev = "b6d75970bb4f6f340887e1eadad5aa8ce78f30e3"; + sha256 = "sha256-rCp8jyqQfq5eVdvKZz3vKuDfcR+gQOEAfBZx2It/rb0="; }; - goDeps = ./deps.nix; + vendorSha256 = "sha256-0O80uhxSVsV9N7Z/FgaLwcjZqeb4MqSCE1YW5Zd32ns="; nativeBuildInputs = [ pkg-config ]; buildInputs = [ glib libxml2 ]; + ldflags = [ "-s" "-w" ]; + meta = with lib; { homepage = "https://github.com/sloonz/ua"; license = licenses.isc; diff --git a/pkgs/tools/networking/ua/deps.nix b/pkgs/tools/networking/ua/deps.nix deleted file mode 100644 index e59b9f239a6..00000000000 --- a/pkgs/tools/networking/ua/deps.nix +++ /dev/null @@ -1,57 +0,0 @@ -# This file was generated by https://github.com/kamilchm/go2nix v1.2.0 -[ - { - goPackagePath = "github.com/sloonz/cfeedparser"; - fetch = { - type = "git"; - url = "https://github.com/sloonz/cfeedparser"; - rev = "a220b181f09fa7fba347c7fa72168ed8a010907a"; - sha256 = "1dsdzflwbb0cw39bs37shggmswggb326sfdb5x25f4bpd19z6qp0"; - }; - } - { - goPackagePath = "github.com/sloonz/go-maildir"; - fetch = { - type = "git"; - url = "https://github.com/sloonz/go-maildir"; - rev = "4629e76d952bb24730bbe1b4c7bc628cd54babb6"; - sha256 = "0i9r7hhk0ih47pmc9ixhv17fa6gba3j7vk9g8j0di0pr0siha65f"; - }; - } - { - goPackagePath = "github.com/sloonz/go-mime-message"; - fetch = { - type = "git"; - url = "https://github.com/sloonz/go-mime-message"; - rev = "cf50e17d2410fee25cdb89485ab0d5996f2d3bfc"; - sha256 = "09r45w2qfl0rx785xpgcjv9bvdnwkz7fyr272rdi3krwr900fwxs"; - }; - } - { - goPackagePath = "github.com/sloonz/go-qprintable"; - fetch = { - type = "git"; - url = "https://github.com/sloonz/go-qprintable"; - rev = "775b3a4592d5bfc47b0ba398ec0d4dba018e5926"; - sha256 = "19r8ica7kd946brdh1zn4hkzgbciqsz42a2p1h7hgzpmld51kg43"; - }; - } - { - goPackagePath = "gopkg.in/redis.v3"; - fetch = { - type = "git"; - url = "https://github.com/go-redis/redis"; - rev = "b5e368500d0a508ef8f16e9c2d4025a8a46bcc29"; - sha256 = "1syhnm1csrlfh1jgd1v9bzf2pp9ljyg4ks3z6xx0nqd83xmyhdzh"; - }; - } - { - goPackagePath = "gopkg.in/bsm/ratelimit.v1"; - fetch = { - type = "git"; - url = "https://github.com/bsm/ratelimit"; - rev = "db14e161995a5177acef654cb0dd785e8ee8bc22"; - sha256 = "1ph6dsvgwrsli9akh6arwkvz78hkdb42lyqmgfckjcsar1a2fcsh"; - }; - } -] diff --git a/pkgs/tools/networking/wireguard-go/default.nix b/pkgs/tools/networking/wireguard-go/default.nix index 6f7bc6caa7f..44fadde8e4b 100644 --- a/pkgs/tools/networking/wireguard-go/default.nix +++ b/pkgs/tools/networking/wireguard-go/default.nix @@ -1,25 +1,33 @@ -{ lib, buildGoPackage, fetchzip }: +{ lib, buildGoModule, fetchzip, testers, wireguard-go }: -buildGoPackage rec { +buildGoModule rec { pname = "wireguard-go"; - version = "0.0.20210424"; - - goPackagePath = "golang.zx2c4.com/wireguard"; + version = "0.0.20220316"; src = fetchzip { url = "https://git.zx2c4.com/wireguard-go/snapshot/wireguard-go-${version}.tar.xz"; - sha256 = "RUUueSsfEi1H+ckrnPKqbVlWONhCplMMftlyAmwK+ss="; + sha256 = "sha256-OQiG92idGwOXWX4H4HNmk2dmRM2+GtssJFzavhj1HxM="; }; - goDeps = ./deps.nix; + postPatch = '' + # Skip formatting tests + rm -f format_test.go + ''; + + vendorSha256 = "sha256-MrHkOj0YfvAm8zOowXzl23F1NPTCO0F8vMMGT/Y+nQ0="; - passthru.updateScript = ./update.sh; + subPackages = [ "." ]; + + ldflags = [ "-s" "-w" ]; postInstall = '' mv $out/bin/wireguard $out/bin/wireguard-go ''; - doCheck = true; + passthru.tests.version = testers.testVersion { + package = wireguard-go; + version = "v${version}"; + }; meta = with lib; { description = "Userspace Go implementation of WireGuard"; diff --git a/pkgs/tools/networking/wireguard-go/deps.nix b/pkgs/tools/networking/wireguard-go/deps.nix deleted file mode 100644 index 4ffcfa6b2de..00000000000 --- a/pkgs/tools/networking/wireguard-go/deps.nix +++ /dev/null @@ -1,1804 +0,0 @@ -# file generated from go.mod using vgo2nix (https://github.com/nix-community/vgo2nix) -[ - { - goPackagePath = "golang.org/x/crypto"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/crypto"; - rev = "5ea612d1eb83"; - sha256 = "0mbhp35qad92a9fpcpc783jfrhhbgv9zsl0h98k10522blqhd9v5"; - moduleDir = ""; - }; - } - { - goPackagePath = "golang.org/x/net"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/net"; - rev = "e18ecbb05110"; - sha256 = "1vlq8mdscp7yfaa1lmyv03y5m4c2d67ydg2q1i6smkrxghn3zn3q"; - moduleDir = ""; - }; - } - { - goPackagePath = "golang.org/x/sys"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/sys"; - rev = "94ec62e08169"; - sha256 = "1ir32rrysr7a06ixxr7vkwqx0c3y1rfxyfspc5xk0628cqhj1320"; - moduleDir = ""; - }; - } - { - goPackagePath = "golang.org/x/term"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/term"; - rev = "7de9c90e9dd1"; - sha256 = "1ba252xmv6qsvf1w1gcy98mngrj0vd4inbjw0lsklqvva65nljna"; - moduleDir = ""; - }; - } - { - goPackagePath = "golang.org/x/text"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/text"; - rev = "v0.3.3"; - sha256 = "19pihqm3phyndmiw6i42pdv6z1rbvlqlsnhsyqf9gsnn0qnmqqlh"; - moduleDir = ""; 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- fetch = { - type = "git"; - url = "https://go.googlesource.com/mobile"; - rev = "d2bd2a29d028"; - sha256 = "1nv6vvhnjr01nx9y06q46ww87dppdwpbqrlsfg1xf2587wxl8xiv"; - moduleDir = ""; - }; - } - { - goPackagePath = "golang.org/x/mod"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/mod"; - rev = "v0.4.0"; - sha256 = "1ri003765yxawq6s8jbkbiaijihwrg980c4qwqsaa5x0sq2psrg1"; - moduleDir = ""; - }; - } - { - goPackagePath = "golang.org/x/oauth2"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/oauth2"; - rev = "08078c50e5b5"; - sha256 = "0zynwxw47nhwhs6n1c87c9np43lwl9m9z2w2cmdvjwhsisa93b75"; - moduleDir = ""; - }; - } - { - goPackagePath = "golang.org/x/sync"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/sync"; - rev = "67f06af15bc9"; - sha256 = "093p4panc808ak5bamzz7m9nb0xxib7778jpnr6f0xkz1n4fzyw5"; - moduleDir = ""; - }; - } - { - goPackagePath = "golang.org/x/time"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/time"; - rev = "f8bda1e9f3ba"; - sha256 = "0d3ba0p47j9v5f7wwg29whyfwz9rv94ada5nv8f8hn7v87820xqi"; - moduleDir = ""; - }; - } - { - goPackagePath = "golang.org/x/tools"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/tools"; - rev = "v0.1.0"; - sha256 = "1asrm22kv5x891qkbpap8alg612k321jbs1akc0vwsan251gm507"; - moduleDir = ""; - }; - } - { - goPackagePath = "golang.org/x/xerrors"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/xerrors"; - rev = "5ec99f83aff1"; - sha256 = "1dbzc3gmf2haazpv7cgmv97rq40g2xzwbglc17vas8dwhgwgwrzb"; - moduleDir = ""; - }; - } - { - goPackagePath = "google.golang.org/api"; - fetch = { - type = "git"; - url = "https://github.com/googleapis/google-api-go-client"; - rev = "v0.36.0"; - sha256 = "1x6wlavrqi2r6ss3h2kg94p2lfj0z019kc85zm1pajpf0k23fxp7"; - moduleDir = ""; - }; - } - { - goPackagePath = "google.golang.org/appengine"; - fetch = { - type = "git"; - url = "https://github.com/golang/appengine"; - rev = "v1.6.7"; - sha256 = "1wkipg7xxc0ha5p6c3bj0vpgq38l18441n5l6zxdhx0gzvz5z1hs"; - moduleDir = ""; - }; - } - { - goPackagePath = "google.golang.org/genproto"; - fetch = { - type = "git"; - url = "https://github.com/googleapis/go-genproto"; - rev = "ffc7fda8c3d7"; - sha256 = "14zgn3g8b5rrd9cbznx0dgg64p7aqb0f42z76h4bkgywlp2mizfp"; - moduleDir = ""; - }; - } - { - goPackagePath = "google.golang.org/grpc"; - fetch = { - type = "git"; - url = "https://github.com/grpc/grpc-go"; - rev = "9280052d3665"; - sha256 = "0n036fz5ssamrm8acxclvm6l1196pznsgygwhkc3cl1kvfs93mxh"; - moduleDir = ""; - }; - } - { - goPackagePath = "google.golang.org/protobuf"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/protobuf"; - rev = "d3470999428b"; - sha256 = "0sgwfkcr6n7m1ivyq34rz4rd6gm5pzswa73nvzj59dkaknj68xfb"; - moduleDir = ""; - }; - } - { - goPackagePath = "gopkg.in/check.v1"; - fetch = { - type = "git"; - url = "https://gopkg.in/check.v1"; - rev = "788fd7840127"; - sha256 = "0v3bim0j375z81zrpr5qv42knqs0y2qv2vkjiqi5axvb78slki1a"; - moduleDir = ""; - }; - } - { - goPackagePath = "gopkg.in/errgo.v2"; - fetch = { - type = "git"; - url = "https://gopkg.in/errgo.v2"; - rev = "v2.1.0"; - sha256 = "065mbihiy7q67wnql0bzl9y1kkvck5ivra68254zbih52jxwrgr2"; - moduleDir = ""; - }; - } - { - goPackagePath = "gopkg.in/fsnotify.v1"; - fetch = { - type = "git"; - url = "https://gopkg.in/fsnotify.v1"; - rev = "v1.4.7"; - sha256 = "07va9crci0ijlivbb7q57d2rz9h27zgn2fsm60spjsqpdbvyrx4g"; - moduleDir = ""; - }; - } - { - goPackagePath = "gopkg.in/inf.v0"; - fetch = { - type = "git"; - url = "https://gopkg.in/inf.v0"; - rev = "v0.9.1"; - sha256 = "00k5iqjcp371fllqxncv7jkf80hn1zww92zm78cclbcn4ybigkng"; - moduleDir = ""; - }; - } - { - goPackagePath = "gopkg.in/tomb.v1"; - fetch = { - type = "git"; - url = "https://gopkg.in/tomb.v1"; - rev = "dd632973f1e7"; - sha256 = "1lqmq1ag7s4b3gc3ddvr792c5xb5k6sfn0cchr3i2s7f1c231zjv"; - moduleDir = ""; - }; - } - { - goPackagePath = "gopkg.in/yaml.v2"; - fetch = { - type = "git"; - url = "https://gopkg.in/yaml.v2"; - rev = "v2.2.8"; - sha256 = "1inf7svydzscwv9fcjd2rm61a4xjk6jkswknybmns2n58shimapw"; - moduleDir = ""; - }; - } - { - goPackagePath = "gotest.tools"; - fetch = { - type = "git"; - url = "https://github.com/gotestyourself/gotest.tools"; - rev = "v2.2.0"; - sha256 = "0yif3gdyckmf8i54jq0xn00kflla5rhib9sarw66ngnbl7bn9kyl"; - moduleDir = ""; - }; - } - { - goPackagePath = "gvisor.dev/gvisor"; - fetch = { - type = "git"; - url = "https://github.com/google/gvisor"; - rev = "a64c3a1b5a9f"; - sha256 = "0jw63la37gskknn7vlpwv9iw39zr4bv87rrr2lwqicq9mqi5ajl8"; - moduleDir = ""; - }; - } - { - goPackagePath = "honnef.co/go/tools"; - fetch = { - type = "git"; - url = "https://github.com/dominikh/go-tools"; - rev = "v0.1.1"; - sha256 = "0a1a4dhz33grwg892436bjhgp8sygrg8yhdhy8dh6i3l6n9dalfh"; - moduleDir = ""; - }; - } - { - goPackagePath = "k8s.io/api"; - fetch = { - type = "git"; - url = "https://github.com/kubernetes/api"; - rev = "v0.16.13"; - sha256 = "0dzsvihy7rjwknk44qphridpqyd13143gzlqb8jdx7524dg3m28a"; - moduleDir = ""; - }; - } - { - goPackagePath = "k8s.io/apimachinery"; - fetch = { - type = "git"; - url = "https://github.com/kubernetes/apimachinery"; - rev = "v0.16.14-rc.0"; - sha256 = "1nsw0p6mmsraqysglihjr3y9rfdp8nryygb7hndg98fz47hzs7yz"; - moduleDir = ""; - }; - } - { - goPackagePath = "k8s.io/client-go"; - fetch = { - type = "git"; - url = "https://github.com/kubernetes/client-go"; - rev = "v0.16.13"; - sha256 = "02cxhmpkqqrvjq1wv6y81p8a4rikmwsqfbl3yzjj9b8wn306jx0z"; - moduleDir = ""; - }; - } - { - goPackagePath = "k8s.io/gengo"; - fetch = { - type = "git"; - url = "https://github.com/kubernetes/gengo"; - rev = "0689ccc1d7d6"; - sha256 = "10c0kbm07pzxwdxpsmcgqkcxqxaijyywvwj1rciw6ssfcgx7kdc5"; - moduleDir = ""; - }; - } - { - goPackagePath = "k8s.io/klog"; - fetch = { - type = "git"; - url = "https://github.com/kubernetes/klog"; - rev = "v1.0.0"; - sha256 = "1cgannfmldcrcksb2wqdn2b5qabqyxl9r25w9y4qbljw24hhnlvn"; - moduleDir = ""; - }; - } - { - goPackagePath = "k8s.io/kube-openapi"; - fetch = { - type = "git"; - url = "https://github.com/kubernetes/kube-openapi"; - rev = "594e756bea31"; - sha256 = "07d9f1sipjyrgfq8965h4irzcl7bfs439z13x2198lwrys6nhcjf"; - moduleDir = ""; - }; - } - { - goPackagePath = "k8s.io/utils"; - fetch = { - type = "git"; - url = "https://github.com/kubernetes/utils"; - rev = "581e00157fb1"; - sha256 = "0mpymzis079wnqfzwy2b2ijv2b24rcy2ky468qqizgram564i9ba"; - moduleDir = ""; - }; - } - { - goPackagePath = "rsc.io/binaryregexp"; - fetch = { - type = "git"; - url = "https://github.com/rsc/binaryregexp"; - rev = "v0.2.0"; - sha256 = "1kar0myy85waw418zslviwx8846zj0m9cmqkxjx0fvgjdi70nc4b"; - moduleDir = ""; - }; - } - { - goPackagePath = "rsc.io/quote/v3"; - fetch = { - type = "git"; - url = "https://github.com/rsc/quote"; - rev = "v3.1.0"; - sha256 = "0nvv97hwwrl1mx5gzsbdm1ndnwpg3m7i2jb10ig9wily7zmvki0i"; - moduleDir = ""; - }; - } - { - goPackagePath = "rsc.io/sampler"; - fetch = { - type = "git"; - url = "https://github.com/rsc/sampler"; - rev = "v1.3.0"; - sha256 = "0byxk2ynba50py805kcvbvjzh59l1r308i1xgyzpw6lff4xx9xjh"; - moduleDir = ""; - }; - } - { - goPackagePath = "sigs.k8s.io/structured-merge-diff"; - fetch = { - type = "git"; - url = "https://github.com/kubernetes-sigs/structured-merge-diff"; - rev = "15d366b2352e"; - sha256 = "1anrx09ksgrwjwmbrcrk3hx8wyzjaakzmmn36nd23if36nv1xg11"; - moduleDir = ""; - }; - } - { - goPackagePath = "sigs.k8s.io/yaml"; - fetch = { - type = "git"; - url = "https://github.com/kubernetes-sigs/yaml"; - rev = "v1.1.0"; - sha256 = "1p7hvjdr5jsyk7nys1g1pmgnf3ys6n320i6hds85afppk81k01kb"; - moduleDir = ""; - }; - } - -] diff --git a/pkgs/tools/networking/wireguard-go/update.sh b/pkgs/tools/networking/wireguard-go/update.sh deleted file mode 100755 index 2b6b8317a1e..00000000000 --- a/pkgs/tools/networking/wireguard-go/update.sh +++ /dev/null @@ -1,14 +0,0 @@ -#!/usr/bin/env nix-shell -#!nix-shell -i bash -p curl gnused common-updater-scripts vgo2nix - -set -eu -o pipefail - -basedir="$(git rev-parse --show-toplevel)" -version="$(curl -sL https://build.wireguard.com/distros.txt | sed -n 's/^upstream\tgo\t\([^\t]\+\)\t.*/\1/p')" -update-source-version wireguard-go "$version" - -vgo2nix -dir $(nix-build -A wireguard-go.src) -outfile "$basedir/pkgs/tools/networking/wireguard-go/deps.nix" - -if [[ -f "$basedir/wireguard-go.log" ]];then - rm "$basedir/wireguard-go.log" -fi diff --git a/pkgs/tools/networking/zerotierone/default.nix b/pkgs/tools/networking/zerotierone/default.nix index 3062befe2d3..5a9239e2737 100644 --- a/pkgs/tools/networking/zerotierone/default.nix +++ b/pkgs/tools/networking/zerotierone/default.nix @@ -1,15 +1,37 @@ -{ lib, stdenv, buildPackages, fetchFromGitHub, openssl, lzo, zlib, iproute2, ronn }: +{ lib +, stdenv +, rustPlatform +, fetchFromGitHub +, fetchurl -stdenv.mkDerivation rec { +, buildPackages +, iproute2 +, lzo +, openssl +, pkg-config +, ronn +, zlib +}: + +let pname = "zerotierone"; - version = "1.8.4"; + version = "1.8.9"; src = fetchFromGitHub { owner = "zerotier"; repo = "ZeroTierOne"; rev = version; - sha256 = "sha256-aM0FkcrSd5dEJVdJryIGuyWNFwvKH0SBfOuy4dIMK4A="; + sha256 = "sha256-N1VqzjaFJRJiSG4qHqRy4Fs8TlkUqyDoq0/3JQdGwfA="; + }; +in stdenv.mkDerivation { + inherit pname version src; + + cargoDeps = rustPlatform.fetchCargoTarball { + src = "${src}/zeroidc"; + name = "${pname}-${version}"; + sha256 = "sha256-PDsJtz279P2IpgiL0T92IbcANeGSUnGKhEH1dj9VtbM="; }; + postPatch = "cp ${src}/zeroidc/Cargo.lock Cargo.lock"; preConfigure = '' patchShebangs ./doc/build.sh @@ -20,9 +42,19 @@ stdenv.mkDerivation rec { --replace 'armv5' 'armv6' ''; - - nativeBuildInputs = [ ronn ]; - buildInputs = [ openssl lzo zlib iproute2 ]; + nativeBuildInputs = [ + pkg-config + ronn + rustPlatform.cargoSetupHook + rustPlatform.rust.cargo + rustPlatform.rust.rustc + ]; + buildInputs = [ + iproute2 + lzo + openssl + zlib + ]; enableParallelBuilding = true; @@ -30,18 +62,20 @@ stdenv.mkDerivation rec { doCheck = stdenv.hostPlatform == stdenv.buildPlatform; checkPhase = '' + runHook preCheck ./zerotier-selftest + runHook postCheck ''; - installPhase = '' - install -Dt "$out/bin/" zerotier-one - ln -s $out/bin/zerotier-one $out/bin/zerotier-idtool - ln -s $out/bin/zerotier-one $out/bin/zerotier-cli + installFlags = [ "DESTDIR=$$out/upstream" ]; + + postInstall = '' + mv $out/upstream/usr/sbin $out/bin + + mkdir -p $man/share + mv $out/upstream/usr/share/man $man/share/man - mkdir -p $man/share/man/man8 - for cmd in zerotier-one.8 zerotier-cli.1 zerotier-idtool.1; do - cat doc/$cmd | gzip -9n > $man/share/man/man8/$cmd.gz - done + rm -rf $out/upstream ''; outputs = [ "out" "man" ]; diff --git a/pkgs/tools/nix/alejandra/default.nix b/pkgs/tools/nix/alejandra/default.nix index 62deef516d5..0e7f5e133ea 100644 --- a/pkgs/tools/nix/alejandra/default.nix +++ b/pkgs/tools/nix/alejandra/default.nix @@ -7,16 +7,16 @@ rustPlatform.buildRustPackage rec { pname = "alejandra"; - version = "1.2.0"; + version = "1.4.0"; src = fetchFromGitHub { owner = "kamadorueda"; repo = "alejandra"; rev = version; - sha256 = "sha256-35hEJuMvRswOPKb9lbB9ZuHVe0eJN6WJc4T8Frn0hYQ="; + sha256 = "sha256-0AolxQtKj3Oek0WSbODDpPVO5Ih8PXHOA3qXEKPB4dQ="; }; - cargoSha256 = "sha256-SsIpggbRQPjpCYgCG4sSJ022MmMV4bJJ8UAHcJR74O8="; + cargoSha256 = "sha256-USI98hozlTaTj07tMbCQEWDgRkHsd4PFW1HUpKsNZJA="; passthru.tests = { version = testers.testVersion { package = alejandra; }; diff --git a/pkgs/tools/nix/npins/default.nix b/pkgs/tools/nix/npins/default.nix new file mode 100644 index 00000000000..8324a2d8900 --- /dev/null +++ b/pkgs/tools/nix/npins/default.nix @@ -0,0 +1,44 @@ +{ lib +, rustPlatform +, fetchFromGitHub +, nix-gitignore +, makeWrapper +, stdenv +, darwin +, callPackage + + # runtime dependencies +, nix # for nix-prefetch-url +, nix-prefetch-git +, git # for git ls-remote +}: + +let + runtimePath = lib.makeBinPath [ nix nix-prefetch-git git ]; + sources = (builtins.fromJSON (builtins.readFile ./sources.json)).pins; +in rustPlatform.buildRustPackage rec { + pname = "npins"; + version = src.version; + src = passthru.mkSource sources.npins; + + cargoSha256 = "0rwnzkmx91cwcz9yw0rbbqv73ba6ggim9f4qgz5pgy6h696ld2k8"; + + buildInputs = lib.optional stdenv.isDarwin (with darwin.apple_sdk.frameworks; [ Security ]); + nativeBuildInputs = [ makeWrapper ]; + + # (Almost) all tests require internet + doCheck = false; + + postFixup = '' + wrapProgram $out/bin/npins --prefix PATH : "${runtimePath}" + ''; + + meta = with lib; { + description = "Simple and convenient dependency pinning for Nix"; + homepage = "https://github.com/andir/npins"; + license = licenses.eupl12; + maintainers = with maintainers; [ piegames ]; + }; + + passthru.mkSource = callPackage ./source.nix {}; +} diff --git a/pkgs/tools/nix/npins/source.nix b/pkgs/tools/nix/npins/source.nix new file mode 100644 index 00000000000..8c9e47204af --- /dev/null +++ b/pkgs/tools/nix/npins/source.nix @@ -0,0 +1,57 @@ +# Not part of the public API – for use within nixpkgs only +# +# Usage: +# ```nix +# let +# sources = builtins.fromJSON (builtins.readFile ./sources.json); +# in mkMyDerivation rec { +# version = src.version; # This obviously only works for releases +# src = pkgs.npins.mkSource sources.mySource; +# } +# ``` + +{ fetchgit +, fetchzip +, fetchurl +}: +let + mkSource = spec: + assert spec ? type; let + path = + if spec.type == "Git" then mkGitSource spec + else if spec.type == "GitRelease" then mkGitSource spec + else if spec.type == "PyPi" then mkPyPiSource spec + else if spec.type == "Channel" then mkChannelSource spec + else throw "Unknown source type ${spec.type}"; + in + spec // { outPath = path; }; + + mkGitSource = { repository, revision, url ? null, hash, ... }: + assert repository ? type; + # At the moment, either it is a plain git repository (which has an url), or it is a GitHub/GitLab repository + # In the latter case, there we will always be an url to the tarball + if url != null then + (fetchzip { + inherit url; + sha256 = hash; + extension = "tar"; + }) + else assert repository.type == "Git"; fetchgit { + url = repository.url; + rev = revision; + }; + + mkPyPiSource = { url, hash, ... }: + fetchurl { + inherit url; + sha256 = hash; + }; + + mkChannelSource = { url, hash, ... }: + fetchzip { + inherit url; + sha256 = hash; + extension = "tar"; + }; +in + mkSource diff --git a/pkgs/tools/nix/npins/sources.json b/pkgs/tools/nix/npins/sources.json new file mode 100644 index 00000000000..0481abe3f97 --- /dev/null +++ b/pkgs/tools/nix/npins/sources.json @@ -0,0 +1,19 @@ +{ + "pins": { + "npins": { + "type": "GitRelease", + "repository": { + "type": "GitHub", + "owner": "andir", + "repo": "npins" + }, + "pre_releases": false, + "version_upper_bound": null, + "version": "0.1.0", + "revision": "5c9253ff6010f435ab73fbe1e50ae0fdca0ec07b", + "url": "https://api.github.com/repos/andir/npins/tarball/0.1.0", + "hash": "019fr9xsirld8kap75k18in3krkikqhjn4mglpy3lyhbhc5n1kh6" + } + }, + "version": 2 +} diff --git a/pkgs/tools/package-management/cde/default.nix b/pkgs/tools/package-management/cde/default.nix index acebe472675..5e86e2affb3 100644 --- a/pkgs/tools/package-management/cde/default.nix +++ b/pkgs/tools/package-management/cde/default.nix @@ -25,6 +25,12 @@ stdenv.mkDerivation rec { patchShebangs . ''; + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: ../readelf-mini/libreadelf-mini.a(dwarf.o):/build/source/readelf-mini/dwarf.c:64: + # multiple definition of `do_wide'; ../readelf-mini/libreadelf-mini.a(readelf-mini.o):/build/source/readelf-mini/readelf-mini.c:170: first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + installPhase = '' install -d $out/bin install -t $out/bin cde cde-exec @@ -36,7 +42,7 @@ stdenv.mkDerivation rec { license = licenses.gpl3Plus; maintainers = [ maintainers.rlupton20 ]; platforms = platforms.linux; - # error: architecture aarch64 is not supported by strace + # error: architecture aarch64 is not supported by bundled strace badPlatforms = [ "aarch64-linux" ]; }; } diff --git a/pkgs/tools/package-management/micromamba/default.nix b/pkgs/tools/package-management/micromamba/default.nix index 8f6cdd574a1..c1f8fc9c990 100644 --- a/pkgs/tools/package-management/micromamba/default.nix +++ b/pkgs/tools/package-management/micromamba/default.nix @@ -28,13 +28,13 @@ let in stdenv.mkDerivation rec { pname = "micromamba"; - version = "0.21.2"; + version = "0.22.0"; src = fetchFromGitHub { owner = "mamba-org"; repo = "mamba"; - rev = "mamba-" + version; - sha256 = "0zsl0rhsx87vvwcwc1xn7gqgbxffprr8dyc9rkr6kcr4rjgy9yzp"; + rev = "micromamba-" + version; + sha256 = "sha256-9/vkn8wks2nyzIn5hnK+zvX18Du2B8YZ3/ugrmEGVH8="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/tools/package-management/nix-update/default.nix b/pkgs/tools/package-management/nix-update/default.nix index fd3b4a5a3e4..dd6cb2e5605 100644 --- a/pkgs/tools/package-management/nix-update/default.nix +++ b/pkgs/tools/package-management/nix-update/default.nix @@ -9,13 +9,13 @@ buildPythonApplication rec { pname = "nix-update"; - version = "0.5.0"; + version = "0.5.1"; src = fetchFromGitHub { owner = "Mic92"; repo = pname; rev = version; - sha256 = "sha256-D1N7ISLZJ3A8G9X5dvtCbRse5h0MRJoeZM3CHkFpqlE="; + sha256 = "sha256-d2S18cBkFJOIGFKrwj9U4bRvdPjrbuWfRUVug1JEw0s="; }; makeWrapperArgs = [ diff --git a/pkgs/tools/package-management/nix/default.nix b/pkgs/tools/package-management/nix/default.nix index 41cffbaf7e6..7b6d872860e 100644 --- a/pkgs/tools/package-management/nix/default.nix +++ b/pkgs/tools/package-management/nix/default.nix @@ -81,8 +81,8 @@ in lib.makeExtensible (self: { }; nix_2_8 = common { - version = "2.8.0"; - sha256 = "sha256-gWYNlEyleqkPfxtGXeq6ggjzJwcXJVdieJxA1Obly9s="; + version = "2.8.1"; + sha256 = "sha256-zldZ4SiwkISFXxrbY/UdwooIZ3Z/I6qKxtpc3zD0T/o="; }; stable = self.nix_2_8; diff --git a/pkgs/tools/package-management/reuse/default.nix b/pkgs/tools/package-management/reuse/default.nix index 0c84abada1e..d3fbc6fc37b 100644 --- a/pkgs/tools/package-management/reuse/default.nix +++ b/pkgs/tools/package-management/reuse/default.nix @@ -2,13 +2,13 @@ python3Packages.buildPythonApplication rec { pname = "reuse"; - version = "0.14.0"; + version = "1.0.0"; src = fetchFromGitHub { owner = "fsfe"; repo = "reuse-tool"; rev = "v${version}"; - sha256 = "1pjc8pckacjlrb8xypyca7jq8ii4an7m5b1g7941d7kkhnlbzm7v"; + sha256 = "0yplsbd5251s8cabazbdqb00jqv8ibbgal7fhj5pfxv5lsz17vkv"; }; propagatedBuildInputs = with python3Packages; [ diff --git a/pkgs/tools/security/arsenal/default.nix b/pkgs/tools/security/arsenal/default.nix index cd927715d2e..62dd9a59866 100644 --- a/pkgs/tools/security/arsenal/default.nix +++ b/pkgs/tools/security/arsenal/default.nix @@ -5,19 +5,22 @@ python3.pkgs.buildPythonApplication rec { pname = "arsenal"; - version = "1.0.2"; + version = "1.1.0"; + format = "setuptools"; src = fetchFromGitHub { owner = "Orange-Cyberdefense"; repo = "arsenal"; rev = version; - sha256 = "sha256-RZxGSrtEa3hAtowD2lUb9BgwpSWlYo90fU9nDvUfoAk="; + sha256 = "sha256-NbNXyR5aNKvRJU9JWGk/ndwU1bhNgDOdcRqBkAY9nPA="; }; propagatedBuildInputs = with python3.pkgs; [ libtmux docutils + pyfzf pyperclip + pyyaml ]; # Project has no tests diff --git a/pkgs/tools/security/aws-iam-authenticator/default.nix b/pkgs/tools/security/aws-iam-authenticator/default.nix index 84a5cef2b46..2d2c2630b9f 100644 --- a/pkgs/tools/security/aws-iam-authenticator/default.nix +++ b/pkgs/tools/security/aws-iam-authenticator/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "aws-iam-authenticator"; - version = "0.5.6"; + version = "0.5.7"; src = fetchFromGitHub { owner = "kubernetes-sigs"; repo = pname; rev = "v${version}"; - sha256 = "sha256-tKvFcCPjxwX424zv100gLRjWRtVgCw2ILyXP8XEUiTA="; + sha256 = "sha256-nFHshmGZZMzssF2INdEqpvARkFjBpd7qNV9tabySABU="; }; # Upstream has inconsistent vendoring, see https://github.com/kubernetes-sigs/aws-iam-authenticator/issues/377 diff --git a/pkgs/tools/security/badrobot/default.nix b/pkgs/tools/security/badrobot/default.nix new file mode 100644 index 00000000000..30123d3c4f7 --- /dev/null +++ b/pkgs/tools/security/badrobot/default.nix @@ -0,0 +1,45 @@ +{ lib, buildGoModule, fetchFromGitHub, installShellFiles }: + +buildGoModule rec { + pname = "badrobot"; + version = "0.1.2"; + + src = fetchFromGitHub { + owner = "controlplaneio"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-LGoNM8wu1qaq4cVEzR723/cueZlndE1Z2PCYEOU+nPQ="; + }; + vendorSha256 = "sha256-FS4kFVi+3NOJOfWfy5m/hDrQvCzpmsNSB/PliF6cVps="; + + nativeBuildInputs = [ installShellFiles ]; + + ldflags = [ + "-s" + "-w" + "-X github.com/controlplaneio/badrobot/cmd.version=v${version}" + ]; + + postInstall = '' + installShellCompletion --cmd badrobot \ + --bash <($out/bin/badrobot completion bash) \ + --fish <($out/bin/badrobot completion fish) \ + --zsh <($out/bin/badrobot completion zsh) + ''; + + meta = with lib; { + homepage = "https://github.com/controlplaneio/badrobot"; + changelog = "https://github.com/controlplaneio/badrobot/blob/v${version}/CHANGELOG.md"; + description = "Operator Security Audit Tool"; + longDescription = '' + Badrobot is a Kubernetes Operator audit tool. It statically analyses + manifests for high risk configurations such as lack of security + restrictions on the deployed controller and the permissions of an + associated clusterole. The risk analysis is primarily focussed on the + likelihood that a compromised Operator would be able to obtain full + cluster permissions. + ''; + license = with licenses; [ asl20 ]; + maintainers = with maintainers; [ jk ]; + }; +} diff --git a/pkgs/tools/security/clamav/default.nix b/pkgs/tools/security/clamav/default.nix index cc1eaf8265c..86d729f95d6 100644 --- a/pkgs/tools/security/clamav/default.nix +++ b/pkgs/tools/security/clamav/default.nix @@ -1,52 +1,36 @@ -{ lib, stdenv, fetchurl, pkg-config +{ lib, stdenv, fetchurl, pkg-config, cmake , zlib, bzip2, libiconv, libxml2, openssl, ncurses, curl, libmilter, pcre2 , libmspack, systemd, Foundation, json_c, check +, rustc, rust-bindgen, rustfmt, cargo, python3 }: stdenv.mkDerivation rec { pname = "clamav"; - version = "0.103.5"; + version = "0.105.0"; src = fetchurl { url = "https://www.clamav.net/downloads/production/${pname}-${version}.tar.gz"; - sha256 = "sha256-HnSx4dKoqQVkScMT9Ippg7nVug1vte8LK+atPIQaVCY="; + sha256 = "sha256-JwIDpUxFgEnbVPzZNoP/Wy2xkVHzY8SOgs7O/d4rNdQ="; }; - # don't install sample config files into the absolute sysconfdir folder - postPatch = '' - substituteInPlace Makefile.in --replace ' etc ' ' ' - ''; + patches = [ + # Flaky test, remove this when https://github.com/Cisco-Talos/clamav/issues/343 is fixed + ./remove-freshclam-test.patch + ./sample-cofiguration-file-install-location.patch + ]; enableParallelBuilding = true; - nativeBuildInputs = [ pkg-config ]; + nativeBuildInputs = [ cmake pkg-config rustc rust-bindgen rustfmt cargo python3 ]; buildInputs = [ zlib bzip2 libxml2 openssl ncurses curl libiconv libmilter pcre2 libmspack json_c check ] ++ lib.optional stdenv.isLinux systemd ++ lib.optional stdenv.isDarwin Foundation; - configureFlags = [ - "--libdir=$(out)/lib" - "--sysconfdir=/etc/clamav" - "--disable-llvm" # enabling breaks the build at the moment - "--with-zlib=${zlib.dev}" - "--with-xml=${libxml2.dev}" - "--with-openssl=${openssl.dev}" - "--with-libcurl=${curl.dev}" - "--with-libjson=${json_c.dev}" - "--with-system-libmspack" - "--enable-milter" - "--disable-unrar" # disable unrar because it's non-free and requires some extra patching to work properly - "--enable-check" - ] ++ lib.optional stdenv.isLinux - "--with-systemdsystemunitdir=$(out)/lib/systemd"; + cmakeFlags = [ + "-DSYSTEMD_UNIT_DIR=${placeholder "out"}/lib/systemd" + "-DAPP_CONFIG_DIRECTORY=/etc/clamav" + ]; - postInstall = '' - mkdir $out/etc - cp etc/*.sample $out/etc - ''; - - # Only required for the unit tests - hardeningDisable = [ "format" ]; doCheck = true; meta = with lib; { diff --git a/pkgs/tools/security/clamav/remove-freshclam-test.patch b/pkgs/tools/security/clamav/remove-freshclam-test.patch new file mode 100644 index 00000000000..93078b52aaa --- /dev/null +++ b/pkgs/tools/security/clamav/remove-freshclam-test.patch @@ -0,0 +1,20 @@ +diff --git a/unit_tests/CMakeLists.txt b/unit_tests/CMakeLists.txt +index 1460357ba..1194abc9d 100644 +--- a/unit_tests/CMakeLists.txt ++++ b/unit_tests/CMakeLists.txt +@@ -371,15 +371,6 @@ if(ENABLE_APP) + set_property(TEST clamd_valgrind PROPERTY ENVIRONMENT ${ENVIRONMENT} VALGRIND=${Valgrind_EXECUTABLE}) + endif() + +- add_test(NAME freshclam COMMAND ${PythonTest_COMMAND};freshclam_test.py +- WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}) +- set_property(TEST freshclam PROPERTY ENVIRONMENT ${ENVIRONMENT}) +- if(Valgrind_FOUND) +- add_test(NAME freshclam_valgrind COMMAND ${PythonTest_COMMAND};freshclam_test.py +- WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}) +- set_property(TEST freshclam_valgrind PROPERTY ENVIRONMENT ${ENVIRONMENT} VALGRIND=${Valgrind_EXECUTABLE}) +- endif() +- + add_test(NAME sigtool COMMAND ${PythonTest_COMMAND};sigtool_test.py + WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}) + set_property(TEST sigtool PROPERTY ENVIRONMENT ${ENVIRONMENT}) diff --git a/pkgs/tools/security/clamav/sample-cofiguration-file-install-location.patch b/pkgs/tools/security/clamav/sample-cofiguration-file-install-location.patch new file mode 100644 index 00000000000..46444627dd3 --- /dev/null +++ b/pkgs/tools/security/clamav/sample-cofiguration-file-install-location.patch @@ -0,0 +1,29 @@ +diff --git a/etc/CMakeLists.txt b/etc/CMakeLists.txt +index 826fff1..3cefc34 100644 +--- a/etc/CMakeLists.txt ++++ b/etc/CMakeLists.txt +@@ -6,14 +6,14 @@ install( + FILES + ${CMAKE_CURRENT_SOURCE_DIR}/clamd.conf.sample + DESTINATION +- ${APP_CONFIG_DIRECTORY} ++ ${CMAKE_INSTALL_PREFIX}/${APP_CONFIG_DIRECTORY} + COMPONENT programs) + + install( + FILES + ${CMAKE_CURRENT_SOURCE_DIR}/freshclam.conf.sample + DESTINATION +- ${APP_CONFIG_DIRECTORY} ++ ${CMAKE_INSTALL_PREFIX}/${APP_CONFIG_DIRECTORY} + COMPONENT programs) + + if(ENABLE_MILTER) +@@ -21,6 +21,6 @@ if(ENABLE_MILTER) + FILES + ${CMAKE_CURRENT_SOURCE_DIR}/clamav-milter.conf.sample + DESTINATION +- ${APP_CONFIG_DIRECTORY} ++ ${CMAKE_INSTALL_PREFIX}/${APP_CONFIG_DIRECTORY} + COMPONENT programs) + endif() diff --git a/pkgs/tools/security/dirmngr/default.nix b/pkgs/tools/security/dirmngr/default.nix deleted file mode 100644 index b7aeed2ace1..00000000000 --- a/pkgs/tools/security/dirmngr/default.nix +++ /dev/null @@ -1,18 +0,0 @@ -{ lib, stdenv, fetchurl, libgpg-error, libgcrypt, libassuan, libksba, pth, openldap -, libiconv}: - -stdenv.mkDerivation rec { - pname = "dirmngr"; - version = "1.1.1"; - src = fetchurl { - url = "mirror://gnupg/dirmngr/dirmngr-${version}.tar.bz2"; - sha256 = "1zz6m87ca55nq5f59hzm6qs48d37h93il881y7d0rf2d6660na6j"; - }; - buildInputs = [ libgpg-error libgcrypt libassuan libksba - pth openldap libiconv ]; - - meta = { - platforms = lib.platforms.unix; - license = lib.licenses.gpl2Plus; - }; -} diff --git a/pkgs/tools/security/exploitdb/default.nix b/pkgs/tools/security/exploitdb/default.nix index 5fc46e66629..8ac6771f358 100644 --- a/pkgs/tools/security/exploitdb/default.nix +++ b/pkgs/tools/security/exploitdb/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "exploitdb"; - version = "2022-05-13"; + version = "2022-05-18"; src = fetchFromGitHub { owner = "offensive-security"; repo = pname; rev = "refs/tags/${version}"; - sha256 = "sha256-hSsVgH6iyfTrHwu/fNc00zhheys8mYYmuDAKJqSWGqo="; + sha256 = "sha256-E2QPeSlsJCRhnwgxr1NerLkSFbLLaTSLl8oeYsHQM+U="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/tools/security/feroxbuster/default.nix b/pkgs/tools/security/feroxbuster/default.nix index d73ba430633..ef815a8ba14 100644 --- a/pkgs/tools/security/feroxbuster/default.nix +++ b/pkgs/tools/security/feroxbuster/default.nix @@ -9,16 +9,16 @@ rustPlatform.buildRustPackage rec { pname = "feroxbuster"; - version = "2.7.0"; + version = "2.7.1"; src = fetchFromGitHub { owner = "epi052"; repo = pname; rev = version; - hash = "sha256-Ub4HOi38fYNJkpXfms1/aDl97h2UI1Fru8+NAiAztoc="; + hash = "sha256-B6FeY5pWW5+y/0HlVedkm8ol2z9GXgEYe5j7/uMhqsw="; }; - cargoSha256 = "sha256-ODLL++wn8IQloEFZXF8TasercTKJ0nhPtny4fsi03Ks="; + cargoSha256 = "sha256-OFgt8yu2wlvkP/wjlmRRl8UyD9MUx9/0Rcs6K8jLkjo="; OPENSSL_NO_VENDOR = true; diff --git a/pkgs/tools/security/fprintd/default.nix b/pkgs/tools/security/fprintd/default.nix index d9c17f935ed..50148195754 100644 --- a/pkgs/tools/security/fprintd/default.nix +++ b/pkgs/tools/security/fprintd/default.nix @@ -44,16 +44,7 @@ stdenv.mkDerivation rec { gettext gtk-doc libxslt - # TODO: apply this to D-Bus so that other packages can benefit. - # https://gitlab.freedesktop.org/dbus/dbus/-/merge_requests/202 - (dbus.overrideAttrs (attrs: { - postInstall = attrs.postInstall or "" + '' - ln -s ${fetchurl { - url = "https://gitlab.freedesktop.org/dbus/dbus/-/raw/b207135dbd8c09cf8da28f7e3b0a18bb11483663/doc/catalog.xml"; - sha256 = "1/43XwAIcmRXfM4OXOPephyQyUnW8DSveiZbiPvW72I="; - }} $out/share/xml/dbus-1/catalog.xml - ''; - })) + dbus docbook-xsl-nons docbook_xml_dtd_412 ]; diff --git a/pkgs/tools/security/fwknop/default.nix b/pkgs/tools/security/fwknop/default.nix index b56ba93dc7b..5625ab47058 100644 --- a/pkgs/tools/security/fwknop/default.nix +++ b/pkgs/tools/security/fwknop/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, autoreconfHook +{ lib, stdenv, fetchFromGitHub, fetchpatch, autoreconfHook , libpcap, texinfo , iptables , gnupgSupport ? true, gnupg, gpgme # Increases dependencies! @@ -17,6 +17,16 @@ stdenv.mkDerivation rec { sha256 = "05kvqhmxj9p2y835w75f3jvhr38bb96cd58mvfd7xil9dhmhn9ra"; }; + patches = [ + # Pull patch pending upstream inclusion for -fno-common tollchains: + # https://github.com/mrash/fwknop/pull/319 + (fetchpatch { + name = "fno-common.patch"; + url = "https://github.com/mrash/fwknop/commit/a8214fd58bc46d23b64b3a55db023c7f5a5ea6af.patch"; + sha256 = "0cp1350q66n455hpd3rdydb9anx66bcirza5gyyyy5232zgg58bi"; + }) + ]; + nativeBuildInputs = [ autoreconfHook ]; buildInputs = [ libpcap texinfo ] ++ lib.optionals gnupgSupport [ gnupg gpgme.dev ] diff --git a/pkgs/tools/security/gnome-keysign/default.nix b/pkgs/tools/security/gnome-keysign/default.nix index a94be8295ea..50a1ff98d14 100644 --- a/pkgs/tools/security/gnome-keysign/default.nix +++ b/pkgs/tools/security/gnome-keysign/default.nix @@ -41,7 +41,7 @@ python3.pkgs.buildPythonApplication rec { wrapGAppsHook gobject-introspection ] ++ (with python3.pkgs; [ - Babel + babel babelgladeextractor ]); diff --git a/pkgs/tools/security/gnupg/1.nix b/pkgs/tools/security/gnupg/1.nix index b7bc395cc0a..5fa9bc0bedd 100644 --- a/pkgs/tools/security/gnupg/1.nix +++ b/pkgs/tools/security/gnupg/1.nix @@ -11,6 +11,12 @@ stdenv.mkDerivation rec { buildInputs = [ readline bzip2 ]; + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: ../util/libutil.a(estream-printf.o):/build/gnupg-1.4.23/util/../include/memory.h:100: multiple definition of + # `memory_debug_mode'; gpgsplit.o:/build/gnupg-1.4.23/tools/../include/memory.h:100: first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + doCheck = true; meta = with lib; { diff --git a/pkgs/tools/security/grype/default.nix b/pkgs/tools/security/grype/default.nix index 596eb7f6e50..6f7a7276942 100644 --- a/pkgs/tools/security/grype/default.nix +++ b/pkgs/tools/security/grype/default.nix @@ -6,13 +6,13 @@ buildGoModule rec { pname = "grype"; - version = "0.36.1"; + version = "0.37.0"; src = fetchFromGitHub { owner = "anchore"; repo = pname; rev = "v${version}"; - sha256 = "sha256-BJSjJrDXZHB4MY4RZCmuC5Gn9YJiCQwyOFrXiGX1h18="; + sha256 = "sha256-LcJtEzwChafG269cGZV3iBSlkjQSGIxSMZNj/5HbXVw="; # populate values that require us to use git. By doing this in postFetch we # can delete .git afterwards and maintain better reproducibility of the src. leaveDotGit = true; @@ -25,7 +25,7 @@ buildGoModule rec { ''; }; - vendorSha256 = "sha256-aIFom4hGx7HTobCh9YRyqyf9gUpJIaxAstUUkHjSFnA="; + vendorSha256 = "sha256-7f/kHCWUYilhJeyB6UBJ6yJVFf4Ij6ZBwaeKTaQrZdY="; nativeBuildInputs = [ installShellFiles diff --git a/pkgs/tools/security/hashdeep/default.nix b/pkgs/tools/security/hashdeep/default.nix index 0e24e0ec3a3..b9810344286 100644 --- a/pkgs/tools/security/hashdeep/default.nix +++ b/pkgs/tools/security/hashdeep/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, autoreconfHook }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, autoreconfHook }: stdenv.mkDerivation rec { pname = "hashdeep"; @@ -11,6 +11,17 @@ stdenv.mkDerivation rec { sha256 = "0m2b042ndikavmplv3qjdhfj44hl1h8car83c192xi9nv5ahi7mf"; }; + patches = [ + (fetchpatch { + # Relevant link: <https://www.open-std.org/jtc1/sc22/wg21/docs/cwg_defects.html#1512> + # Defect report fixed in GCC 11 + # Search for "DR 1512" in <https://gcc.gnu.org/gcc-11/changes.html> + name = "fix-cpp-defect-report-1512.patch"; + url = "https://github.com/jessek/hashdeep/commit/6ef69a26126ee4e69a25392fd456b8a66c51dffd.patch"; + sha256 = "sha256-IrqcnrKINeoh56FR25FzSM1YJMkM2yFd/GwOeWGRLFo="; + }) + ]; + nativeBuildInputs = [ autoreconfHook ]; meta = with lib; { diff --git a/pkgs/tools/security/hologram/default.nix b/pkgs/tools/security/hologram/default.nix index ebb88437826..8f5e48ee37e 100644 --- a/pkgs/tools/security/hologram/default.nix +++ b/pkgs/tools/security/hologram/default.nix @@ -1,22 +1,26 @@ -{ lib, buildGoPackage, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub }: -buildGoPackage rec { +buildGoModule rec { pname = "hologram"; - version = "unstable-2018-03-19"; + version = "1.2.1"; src = fetchFromGitHub { owner = "AdRoll"; repo = "hologram"; - rev = "a7bab58642b530edb75b9cf6c1d834c85822ceac"; - sha256 = "00scryz8js6gbw8lp2y23qikbazz2dd992r97rqh0l1q4baa0ckn"; + rev = version; + sha256 = "sha256-rdV/oVo+M5ALyU3a3XlA4kt+TLg0Rnr7/qDyZ9iuIb4="; }; - goPackagePath = "github.com/AdRoll/hologram"; - - preConfigure = '' + postPatch = '' sed -i 's|cacheTimeout != 3600|cacheTimeout != 0|' cmd/hologram-server/main.go + + rm -f agent/metadata_service_test.go server/persistent_ldap_test.go server/server_test.go ''; + vendorSha256 = "sha256-pEYMpBiNbq5eSDiFT+9gMjGHDeTzWIej802Zz6Xtays="; + + ldflags = [ "-s" "-w" ]; + meta = with lib; { homepage = "https://github.com/AdRoll/hologram/"; description = "Easy, painless AWS credentials on developer laptops"; diff --git a/pkgs/tools/security/kube-hunter/default.nix b/pkgs/tools/security/kube-hunter/default.nix index 0f82cc0cbab..d9ef1f38252 100644 --- a/pkgs/tools/security/kube-hunter/default.nix +++ b/pkgs/tools/security/kube-hunter/default.nix @@ -5,13 +5,13 @@ python3.pkgs.buildPythonApplication rec { pname = "kube-hunter"; - version = "0.6.7"; + version = "0.6.8"; src = fetchFromGitHub { owner = "aquasecurity"; repo = pname; rev = "refs/tags/v${version}"; - sha256 = "sha256-W7jW0V91o164EIAzZ7ODWeqTmUaUFDIqlE37x/AycqY="; + sha256 = "sha256-+M8P/VSF9SKPvq+yNPjokyhggY7hzQ9qLLhkiTNbJls="; }; nativeBuildInputs = with python3.pkgs; [ diff --git a/pkgs/tools/security/libmodsecurity/default.nix b/pkgs/tools/security/libmodsecurity/default.nix index 4ba294e42f2..531f88333d0 100644 --- a/pkgs/tools/security/libmodsecurity/default.nix +++ b/pkgs/tools/security/libmodsecurity/default.nix @@ -1,7 +1,7 @@ { lib, stdenv, fetchFromGitHub , autoreconfHook, bison, flex, pkg-config , curl, geoip, libmaxminddb, libxml2, lmdb, lua, pcre -, ssdeep, valgrind, yajl +, ssdeep, yajl , nixosTests }: @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { }; nativeBuildInputs = [ autoreconfHook bison flex pkg-config ]; - buildInputs = [ curl geoip libmaxminddb libxml2 lmdb lua pcre ssdeep valgrind yajl ]; + buildInputs = [ curl geoip libmaxminddb libxml2 lmdb lua pcre ssdeep yajl ]; outputs = [ "out" "dev" ]; diff --git a/pkgs/tools/security/melt/default.nix b/pkgs/tools/security/melt/default.nix index dcceb598a11..065a5fd4d69 100644 --- a/pkgs/tools/security/melt/default.nix +++ b/pkgs/tools/security/melt/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "melt"; - version = "0.4.0"; + version = "0.4.1"; src = fetchFromGitHub { owner = "charmbracelet"; repo = "melt"; rev = "v${version}"; - sha256 = "sha256-R1ml/SQswsltBFLWOvI5GjI4VZUqEH3uwqgmdIrC/Q4="; + sha256 = "sha256-C5bvlgyHU4lfmaAjNddnVyB2B41Wq7yO/RmARAeaORw="; }; vendorSha256 = "sha256-9LTR7CrTBGAh7TPMQenY4vZQ7KMYv02fDsY51pkJZSo="; diff --git a/pkgs/tools/security/metasploit/Gemfile b/pkgs/tools/security/metasploit/Gemfile index a236c08f694..eefa52e57b9 100644 --- a/pkgs/tools/security/metasploit/Gemfile +++ b/pkgs/tools/security/metasploit/Gemfile @@ -1,4 +1,4 @@ # frozen_string_literal: true source "https://rubygems.org" -gem "metasploit-framework", git: "https://github.com/rapid7/metasploit-framework", ref: "refs/tags/6.1.42" +gem "metasploit-framework", git: "https://github.com/rapid7/metasploit-framework", ref: "refs/tags/6.1.43" diff --git a/pkgs/tools/security/metasploit/Gemfile.lock b/pkgs/tools/security/metasploit/Gemfile.lock index 44b71163381..1ee626e7772 100644 --- a/pkgs/tools/security/metasploit/Gemfile.lock +++ b/pkgs/tools/security/metasploit/Gemfile.lock @@ -1,9 +1,9 @@ GIT remote: https://github.com/rapid7/metasploit-framework - revision: 70ec8a21b90103f8405c1bb0e3990a783a5467bc - ref: refs/tags/6.1.42 + revision: c9fe91b3cd4e8738a0da5a23bf8f485d16961751 + ref: refs/tags/6.1.43 specs: - metasploit-framework (6.1.42) + metasploit-framework (6.1.43) actionpack (~> 6.0) activerecord (~> 6.0) activesupport (~> 6.0) @@ -129,19 +129,19 @@ GEM arel-helpers (2.14.0) activerecord (>= 3.1.0, < 8) aws-eventstream (1.2.0) - aws-partitions (1.587.0) - aws-sdk-core (3.130.2) + aws-partitions (1.589.0) + aws-sdk-core (3.131.1) aws-eventstream (~> 1, >= 1.0.2) aws-partitions (~> 1, >= 1.525.0) aws-sigv4 (~> 1.1) - jmespath (~> 1.0) + jmespath (~> 1, >= 1.6.1) aws-sdk-ec2 (1.315.0) aws-sdk-core (~> 3, >= 3.127.0) aws-sigv4 (~> 1.1) aws-sdk-iam (1.68.0) aws-sdk-core (~> 3, >= 3.127.0) aws-sigv4 (~> 1.1) - aws-sdk-kms (1.56.0) + aws-sdk-kms (1.57.0) aws-sdk-core (~> 3, >= 3.127.0) aws-sigv4 (~> 1.1) aws-sdk-s3 (1.114.0) @@ -150,7 +150,7 @@ GEM aws-sigv4 (~> 1.4) aws-sigv4 (1.5.0) aws-eventstream (~> 1, >= 1.0.2) - bcrypt (3.1.17) + bcrypt (3.1.18) bcrypt_pbkdf (1.1.0) bindata (2.4.10) bson (4.15.0) @@ -175,7 +175,7 @@ GEM eventmachine (>= 1.0.0.beta.4) erubi (1.10.0) eventmachine (1.2.7) - faker (2.20.0) + faker (2.21.0) i18n (>= 1.8.11, < 2) faraday (1.10.0) faraday-em_http (~> 1.0) @@ -227,7 +227,7 @@ GEM jmespath (1.6.1) jsobfu (0.4.2) rkelly-remix - json (2.6.1) + json (2.6.2) little-plugger (1.1.4) logging (2.3.0) little-plugger (~> 1.1) diff --git a/pkgs/tools/security/metasploit/default.nix b/pkgs/tools/security/metasploit/default.nix index 38fb708d874..805ae4839dd 100644 --- a/pkgs/tools/security/metasploit/default.nix +++ b/pkgs/tools/security/metasploit/default.nix @@ -15,13 +15,13 @@ let }; in stdenv.mkDerivation rec { pname = "metasploit-framework"; - version = "6.1.42"; + version = "6.1.43"; src = fetchFromGitHub { owner = "rapid7"; repo = "metasploit-framework"; rev = version; - sha256 = "sha256-qsGA7kpS/d2/ANBwU2Q2yAkHlTU7lWSHqOMqZxMh+K8="; + sha256 = "sha256-tw7WuBFSYWDh2saddei6xCQuhKX1O6EiuoKf4sfTYpo="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/tools/security/metasploit/gemset.nix b/pkgs/tools/security/metasploit/gemset.nix index e714be18bfb..c86fbbf05f6 100644 --- a/pkgs/tools/security/metasploit/gemset.nix +++ b/pkgs/tools/security/metasploit/gemset.nix @@ -104,20 +104,20 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0vqb2bfq5db7x66f4n4z30c953y5q8pwwl2067nxhz6j0c486pzm"; + sha256 = "1blp6b22w54y7a969pzzsdrkqqfa57h0b9qj79l6l9ywylkx49qq"; type = "gem"; }; - version = "1.587.0"; + version = "1.589.0"; }; aws-sdk-core = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0hajbavfngn99hcz6n20162jygvwdflldvnlrza7z32hizawaaan"; + sha256 = "0yiz3aaik62rxhxipwznb2bv8ywha13vdxg9nk6anq9bd0nn0728"; type = "gem"; }; - version = "3.130.2"; + version = "3.131.1"; }; aws-sdk-ec2 = { groups = ["default"]; @@ -144,10 +144,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "14dcfqqdx1dy7qwrdyqdvqjs53kswm4njvg34f61jpl9xi3h2yf3"; + sha256 = "1m8vwm4cakfv3i4f723a6id07myx18fpdbq8ypa2j7r5njwxpmzz"; type = "gem"; }; - version = "1.56.0"; + version = "1.57.0"; }; aws-sdk-s3 = { groups = ["default"]; @@ -174,10 +174,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1rakdhrnlclrpy7sihi9ipwdh7fjkkvzga171464lq6rzp07cf65"; + sha256 = "048z3fvcknqx7ikkhrcrykxlqmf9bzc7l0y5h1cnvrc9n2qf0k8m"; type = "gem"; }; - version = "3.1.17"; + version = "3.1.18"; }; bcrypt_pbkdf = { groups = ["default"]; @@ -344,10 +344,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1694ndj701a8q4c4bwxz53kx94ih1rr4pgr4gk7a6c8k4jsbjgwi"; + sha256 = "025lapimxw0db74gf2yd6zypqq1yvfblhk7wkd6h3r1szk7k8r8p"; type = "gem"; }; - version = "2.20.0"; + version = "2.21.0"; }; faraday = { groups = ["default"]; @@ -624,10 +624,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1z9grvjyfz16ag55hg522d3q4dh07hf391sf9s96npc0vfi85xkz"; + sha256 = "0yk5d10yvspkc5jyvx9gc1a9pn1z8v4k2hvjk1l88zixwf3wf3cl"; type = "gem"; }; - version = "2.6.1"; + version = "2.6.2"; }; little-plugger = { groups = ["default"]; @@ -694,12 +694,12 @@ platforms = []; source = { fetchSubmodules = false; - rev = "70ec8a21b90103f8405c1bb0e3990a783a5467bc"; - sha256 = "1bzq449nfap3m23n959v6nahf2f86rj56w6h02zxvzaj9bp81hda"; + rev = "c9fe91b3cd4e8738a0da5a23bf8f485d16961751"; + sha256 = "16k2sg3y57w2p8ia2fzmln22w964pbl7b7f6vbhn0qaj26wdc3mp"; type = "git"; url = "https://github.com/rapid7/metasploit-framework"; }; - version = "6.1.42"; + version = "6.1.43"; }; metasploit-model = { groups = ["default"]; diff --git a/pkgs/tools/security/nuclei/default.nix b/pkgs/tools/security/nuclei/default.nix index 2145c5fc333..076b907d880 100644 --- a/pkgs/tools/security/nuclei/default.nix +++ b/pkgs/tools/security/nuclei/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "nuclei"; - version = "2.7.0"; + version = "2.7.1"; src = fetchFromGitHub { owner = "projectdiscovery"; repo = pname; rev = "v${version}"; - sha256 = "sha256-+yoxpdEU5TDOJsLRXBwddzAIBAzdSu8hdcvhuCWZxtc="; + sha256 = "sha256-ra8BxM+zpe5UKlJ28wc8yE5ta4ro4o2OHfmu9fBqFTA="; }; - vendorSha256 = "sha256-6BC8jf/XaC7W6vsQEFIyIZ0S8XLJv+dFlaFl9VEO7yc="; + vendorSha256 = "sha256-4E9nHBaojkOwnSPxRn2JGFcQTF4WowTOtzE5zRjkqhk="; modRoot = "./v2"; subPackages = [ diff --git a/pkgs/tools/security/rhash/default.nix b/pkgs/tools/security/rhash/default.nix index e82052d961b..e071f460b1a 100644 --- a/pkgs/tools/security/rhash/default.nix +++ b/pkgs/tools/security/rhash/default.nix @@ -34,6 +34,7 @@ stdenv.mkDerivation rec { configureFlags = [ "--ar=${stdenv.cc.targetPrefix}ar" + "--target=${stdenv.hostPlatform.config}" (lib.enableFeature enableStatic "static") (lib.enableFeature enableStatic "lib-static") ]; diff --git a/pkgs/tools/security/sops/default.nix b/pkgs/tools/security/sops/default.nix index 9752d78a183..9c6263c5c85 100644 --- a/pkgs/tools/security/sops/default.nix +++ b/pkgs/tools/security/sops/default.nix @@ -2,16 +2,18 @@ buildGoModule rec { pname = "sops"; - version = "3.7.2"; + version = "3.7.3"; src = fetchFromGitHub { rev = "v${version}"; owner = "mozilla"; repo = pname; - sha256 = "sha256-NMuYMvaBSxKHvpqFkMfnMDvcXxTstqzracuSTT1VB1A="; + sha256 = "sha256-wN1ksLwD4G+fUhvCe+jahh1PojPk6L6tnx1rsc7dz+M="; }; - vendorSha256 = "sha256-00/7O9EcGojUExJPtYWndb16VqrNby/5GsVs8Ak/Isc="; + vendorSha256 = "sha256-8IaE+vhVZkc9QDR6+/3eOSsuf3SYF2upNcCifbqtx14="; + + ldflags = [ "-s" "-w" ]; doCheck = false; diff --git a/pkgs/tools/security/terrascan/default.nix b/pkgs/tools/security/terrascan/default.nix index 02f3615233a..e5ec1d444ce 100644 --- a/pkgs/tools/security/terrascan/default.nix +++ b/pkgs/tools/security/terrascan/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "terrascan"; - version = "1.14.0"; + version = "1.15.0"; src = fetchFromGitHub { owner = "accurics"; repo = pname; rev = "v${version}"; - sha256 = "sha256-O4oLtbijTAgUD+X3rxJkH2VmWLX5nQaN5JwoznNpKOM="; + sha256 = "sha256-up79ryjN9WciEl6fVgTLUZHhXSu7+utQB2ACPAx207E="; }; - vendorSha256 = "sha256-dfd5yQ3t23YyFin770UlCtEIldRxTqeWfgl0GLLF+Qw="; + vendorSha256 = "sha256-EfHcCk2NkicSPeJYgHJT2kh9EwLldksET75ZQambrWA="; # Tests want to download a vulnerable Terraform project doCheck = false; diff --git a/pkgs/tools/security/wapiti/default.nix b/pkgs/tools/security/wapiti/default.nix index 3c6e446df4d..4c24535f8d8 100644 --- a/pkgs/tools/security/wapiti/default.nix +++ b/pkgs/tools/security/wapiti/default.nix @@ -5,14 +5,14 @@ python3.pkgs.buildPythonApplication rec { pname = "wapiti"; - version = "3.1.1"; + version = "3.1.2"; format = "setuptools"; src = fetchFromGitHub { owner = "wapiti-scanner"; repo = pname; rev = version; - sha256 = "1xyvyan5gz7fz8wa2fbgvma59pr79arqra2gvx861szn2njkf272"; + sha256 = "sha256-nGAG+7FqEktc55i5Q2urKh52vm/i6kX4kvS2AVUAUjA="; }; nativeBuildInputs = with python3.pkgs; [ diff --git a/pkgs/tools/security/witness/default.nix b/pkgs/tools/security/witness/default.nix index 921d524be6a..f443d765b57 100644 --- a/pkgs/tools/security/witness/default.nix +++ b/pkgs/tools/security/witness/default.nix @@ -2,15 +2,15 @@ buildGoModule rec { pname = "witness"; - version = "0.1.7"; + version = "0.1.8"; src = fetchFromGitHub { owner = "testifysec"; repo = pname; rev = "v${version}"; - sha256 = "sha256-fkY3/UmHzggmysrae8VCY3NMBxC/LcWoQcXBELEzJlM="; + sha256 = "sha256-i76sw5ysWDZwuNt7CYtpVy9mEV643i4YaMxksglyPWw="; }; - vendorSha256 = "sha256-ajWIjQXLvFQB1AVYyGjyWMrWIyue/d1uU5HHNf4/UcU="; + vendorSha256 = "sha256-A3fnAWEJ7SeUnDfIIOkbHIhUBRB8INcqMleOLL3LHF0="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/tools/system/acpica-tools/default.nix b/pkgs/tools/system/acpica-tools/default.nix index 3559595f556..b34302bde58 100644 --- a/pkgs/tools/system/acpica-tools/default.nix +++ b/pkgs/tools/system/acpica-tools/default.nix @@ -1,17 +1,20 @@ -{ lib, stdenv, fetchurl, bison, flex }: +{ lib +, stdenv +, fetchurl +, bison +, flex +}: stdenv.mkDerivation rec { pname = "acpica-tools"; - version = "20211217"; + version = "20220331"; src = fetchurl { url = "https://acpica.org/sites/acpica/files/acpica-unix-${version}.tar.gz"; - sha256 = "14jrrdrl3sw438791zf2v6rjvhiq78yl7hz2ldzp83c251cgh495"; + hash = "sha256-rK/2ixTx4IBOu/xLlyaKTMvvz6BTsC7Zkk8rFNipjiE="; }; - NIX_CFLAGS_COMPILE = "-O3"; - - enableParallelBuilding = true; + nativeBuildInputs = [ bison flex ]; buildFlags = [ "acpibin" @@ -24,7 +27,9 @@ stdenv.mkDerivation rec { "iasl" ]; - nativeBuildInputs = [ bison flex ]; + NIX_CFLAGS_COMPILE = "-O3"; + + enableParallelBuilding = true; # We can handle stripping ourselves. INSTALLFLAGS = "-m 555"; @@ -32,10 +37,10 @@ stdenv.mkDerivation rec { installFlags = [ "PREFIX=${placeholder "out"}" ]; meta = with lib; { - description = "ACPICA Tools"; homepage = "https://www.acpica.org/"; + description = "ACPICA Tools"; license = with licenses; [ iasl gpl2Only bsd3 ]; - platforms = platforms.linux; maintainers = with maintainers; [ tadfisher ]; + platforms = platforms.linux; }; } diff --git a/pkgs/tools/system/ddrutility/default.nix b/pkgs/tools/system/ddrutility/default.nix index 02c89b22989..ce5e16e4eb4 100644 --- a/pkgs/tools/system/ddrutility/default.nix +++ b/pkgs/tools/system/ddrutility/default.nix @@ -13,6 +13,11 @@ stdenv.mkDerivation rec { substituteInPlace makefile --replace /usr/local "" ''; + # Workaround build failure on -fno-common toolchains like upstream + # gcc-10. Otherwise build fails as: + # ld: /build/ccltHly5.o:(.bss+0x119f8): multiple definition of `start_time'; /build/cc9evx3L.o:(.bss+0x10978): first defined here + NIX_CFLAGS_COMPILE = "-fcommon"; + makeFlags = [ "DESTDIR=$(out)" ]; meta = with lib; { diff --git a/pkgs/tools/system/gohai/default.nix b/pkgs/tools/system/gohai/default.nix index a4b07f112ae..40fc48b8ffa 100644 --- a/pkgs/tools/system/gohai/default.nix +++ b/pkgs/tools/system/gohai/default.nix @@ -1,26 +1,28 @@ -{ lib, buildGoPackage, fetchgit }: +{ lib, buildGoModule, fetchFromGitHub }: -buildGoPackage rec { +buildGoModule rec { pname = "gohai"; - version = "2018-05-23"; - rev = "60e13eaed98afa238ad6dfc98224c04fbb7b19b1"; + version = "unstable-2022-04-12"; - goPackagePath = "github.com/DataDog/gohai"; - - src = fetchgit { - inherit rev; - url = "https://github.com/DataDog/gohai"; - sha256 = "15hdw195f6ayrmj1nbyfpfswdai1r1z3qjw927mbma7rwql24dkr"; + src = fetchFromGitHub { + owner = "DataDog"; + repo = "gohai"; + rev = "c614f513e87f04d3d19b2d4ae853cc5703f3a9bc"; + sha256 = "sha256-vdzGGTg9SHYS0OQUn3VvrQGpKxzqxBRXDKOm0c7FvYY="; }; - goDeps = ./deps.nix; + vendorSha256 = "sha256-aN1fwGbBm45e6qdRu+4wnv2ZI7SOsIPONB4vF9o2vlI="; + + ldflags = [ "-s" "-w" ]; + + doCheck = false; meta = with lib; { - description = "System information collector"; - homepage = "https://github.com/DataDog/gohai"; - license = licenses.mit; - maintainers = [ maintainers.tazjin ]; - platforms = platforms.unix; + description = "System information collector"; + homepage = "https://github.com/DataDog/gohai"; + license = licenses.mit; + maintainers = with maintainers; [ tazjin ]; + platforms = platforms.unix; longDescription = '' Gohai is a tool which collects an inventory of system diff --git a/pkgs/tools/system/gohai/deps.nix b/pkgs/tools/system/gohai/deps.nix deleted file mode 100644 index f6d63e46024..00000000000 --- a/pkgs/tools/system/gohai/deps.nix +++ /dev/null @@ -1,30 +0,0 @@ -# This file was generated by https://github.com/kamilchm/go2nix v1.2.1 -[ - { - goPackagePath = "github.com/cihub/seelog"; - fetch = { - type = "git"; - url = "https://github.com/cihub/seelog"; - rev = "f561c5e57575bb1e0a2167028b7339b3a8d16fb4"; - sha256 = "0r3228hvgljgpaggj6b9mvxfsizfw25q2c1761wsvcif8gz49cvl"; - }; - } - { - goPackagePath = "github.com/shirou/gopsutil"; - fetch = { - type = "git"; - url = "https://github.com/shirou/gopsutil"; - rev = "eeb1d38d69593f121e060d24d17f7b1f0936b203"; - sha256 = "01qsznk599225gf4pld7p2m30p61y77mvzhrs6raxpk6wf7icp4w"; - }; - } - { - goPackagePath = "golang.org/x/sys"; - fetch = { - type = "git"; - url = "https://go.googlesource.com/sys"; - rev = "77b0e4315053a57ed2962443614bdb28db152054"; - sha256 = "1024gcv1b40i2rgvpgyw2hgy1k5g7473pn29yavwysj37m1rrplp"; - }; - } -] diff --git a/pkgs/tools/system/nats-top/default.nix b/pkgs/tools/system/nats-top/default.nix index 651a9635fb4..ca91ba823f5 100644 --- a/pkgs/tools/system/nats-top/default.nix +++ b/pkgs/tools/system/nats-top/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "nats-top"; - version = "0.5.0"; + version = "0.5.2"; src = fetchFromGitHub { owner = "nats-io"; repo = pname; rev = "v${version}"; - sha256 = "sha256-IZQDwopFAXPT0V+TTiJk6+j/KhLTA3g4kN1j1PVlNt0="; + sha256 = "sha256-yPaaHSCLocgX0KQtHSBAi9GQqPlggdLAADr9ow7WlnU="; }; vendorSha256 = "sha256-cBCR/OXUOa+Lh8UvL/VraDAW0hGGwV7teyvdswZQ5Lo="; diff --git a/pkgs/tools/system/systemd-journal2gelf/default.nix b/pkgs/tools/system/systemd-journal2gelf/default.nix index 62a7c9d8aea..db8d1003cd3 100644 --- a/pkgs/tools/system/systemd-journal2gelf/default.nix +++ b/pkgs/tools/system/systemd-journal2gelf/default.nix @@ -1,21 +1,25 @@ -{ lib, buildGoPackage, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub }: -buildGoPackage rec { - pname = "SystemdJournal2Gelf-unstable"; - version = "20200813"; +buildGoModule rec { + pname = "SystemdJournal2Gelf"; + version = "unstable-2022-02-15"; src = fetchFromGitHub { - rev = "d389dc8583b752cbd37c389a55a6c82200e47394"; owner = "parse-nl"; repo = "SystemdJournal2Gelf"; - sha256 = "0p38r5kdfcn6n2d44dygrs5xgv51s5qlsfhzzwn16r3n6x91s62b"; - fetchSubmodules = true; + rev = "86f9f41b26b6848345c2424fbf1ff907b876bb5b"; + sha256 = "sha256-xsrKuZVN6Eb0vG98LbQnFqNxHthv+uL/h2HCDiFY0Oo="; }; - goPackagePath = "github.com/parse-nl/SystemdJournal2Gelf"; + vendorSha256 = null; + + ldflags = [ "-s" "-w" ]; + + doCheck = false; meta = with lib; { description = "Export entries from systemd's journal and send them to a graylog server using gelf"; + homepage = "https://github.com/parse-nl/SystemdJournal2Gelf"; license = licenses.bsd2; maintainers = with maintainers; [ fadenb fpletz ]; platforms = platforms.unix; diff --git a/pkgs/tools/text/discount/default.nix b/pkgs/tools/text/discount/default.nix index 44d50c0c963..7422b445d81 100644 --- a/pkgs/tools/text/discount/default.nix +++ b/pkgs/tools/text/discount/default.nix @@ -1,36 +1,28 @@ { lib, stdenv, fetchFromGitHub }: stdenv.mkDerivation rec { - version = "2.2.7"; + version = "2.2.7b"; pname = "discount"; src = fetchFromGitHub { owner = "Orc"; repo = pname; rev = "v${version}"; - sha256 = "0p2gznrsvv82zxbajqir8y2ap1ribbgagqg1bzhv3i81p2byhjh7"; + sha256 = "sha256-S6OVKYulhvEPRqNXBsvZ7m2W4cbdnrpZKPAo3SfD+9s="; }; - patches = [ - ./fix-configure-path.patch - - # Fix parallel make depends: - # - https://github.com/Orc/discount/commit/e42188e6c4c30d9de668cf98d98dd0c13ecce7cf.patch - # - https://github.com/Orc/discount/pull/245 - ./parallel-make.patch - ]; + patches = [ ./fix-configure-path.patch ]; configureScript = "./configure.sh"; - configureFlags = [ - "--enable-all-features" - "--pkg-config" "--shared" - "--with-fenced-code" - # Use deterministic mangling - "--debian-glitch" + "--debian-glitch" # use deterministic mangling + "--pkg-config" + "--h1-title" ]; enableParallelBuilding = true; + installTargets = [ "install.everything" ]; + doCheck = true; postFixup = lib.optionalString stdenv.isDarwin '' diff --git a/pkgs/tools/text/discount/parallel-make.patch b/pkgs/tools/text/discount/parallel-make.patch deleted file mode 100644 index 583622a9152..00000000000 --- a/pkgs/tools/text/discount/parallel-make.patch +++ /dev/null @@ -1,15 +0,0 @@ -https://github.com/Orc/discount/pull/245 -https://github.com/Orc/discount/commit/e42188e6c4c30d9de668cf98d98dd0c13ecce7cf.patch - -Fix parallel make failure: add missing pandoc_headers dependency. ---- a/Makefile.in -+++ b/Makefile.in -@@ -139,7 +139,7 @@ test: $(PGMS) $(TESTFRAMEWORK) verify - - pandoc_headers.o: tools/pandoc_headers.c config.h - $(BUILD) -c -o pandoc_headers.o tools/pandoc_headers.c --pandoc_headers: pandoc_headers.o -+pandoc_headers: pandoc_headers.o $(COMMON) $(MKDLIB) - $(LINK) -o pandoc_headers pandoc_headers.o $(COMMON) -lmarkdown - - branch.o: tools/branch.c config.h diff --git a/pkgs/tools/text/goawk/default.nix b/pkgs/tools/text/goawk/default.nix index 19c8e516e96..28310ab48b8 100644 --- a/pkgs/tools/text/goawk/default.nix +++ b/pkgs/tools/text/goawk/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "goawk"; - version = "1.16.0"; + version = "1.18.0"; src = fetchFromGitHub { owner = "benhoyt"; repo = "goawk"; rev = "v${version}"; - sha256 = "sha256-ALzCcSZHnzidj4tQzZWXT8WDPIE147KWbn7n1JHCTRE="; + sha256 = "sha256-kRakQo18qOzrlvsAKtKTHEacUxDfoWyMmtiM7d5WCvQ="; }; vendorSha256 = "sha256-pQpattmS9VmO3ZIQUFn66az8GSmB4IvYhTTCFn6SUmo="; diff --git a/pkgs/tools/text/link-grammar/default.nix b/pkgs/tools/text/link-grammar/default.nix index c685ef60331..3e348f159c1 100644 --- a/pkgs/tools/text/link-grammar/default.nix +++ b/pkgs/tools/text/link-grammar/default.nix @@ -3,6 +3,7 @@ , fetchurl , pkg-config , python3 +, flex , sqlite , libedit , runCommand @@ -13,18 +14,19 @@ let link-grammar = stdenv.mkDerivation rec { pname = "link-grammar"; - version = "5.10.2"; + version = "5.10.4"; outputs = [ "bin" "out" "dev" "man" ]; src = fetchurl { url = "http://www.abisource.com/downloads/${pname}/${version}/${pname}-${version}.tar.gz"; - sha256 = "sha256-KM7HUuqg44l66WEzO2knRZ+Laf7+aMKqUnKYPX24abY="; + sha256 = "sha256-Pd4tEsre7aGTlEoereSElisCGXXhwgZDTMt4UEZIf4E="; }; nativeBuildInputs = [ pkg-config python3 + flex ]; buildInputs = [ diff --git a/pkgs/tools/text/paperoni/default.nix b/pkgs/tools/text/paperoni/default.nix new file mode 100644 index 00000000000..8c9bbf9e622 --- /dev/null +++ b/pkgs/tools/text/paperoni/default.nix @@ -0,0 +1,34 @@ +{ lib +, stdenv +, rustPlatform +, fetchFromGitHub +, pkg-config +, openssl +, Security +}: + +rustPlatform.buildRustPackage rec { + pname = "paperoni"; + version = "0.6.1-alpha1"; + + src = fetchFromGitHub { + owner = "hipstermojo"; + repo = pname; + rev = "v${version}"; + sha256 = "sha256-vTylnDtoPpiRtk/vew1hLq3g8pepWRVqBEBnvSif4Zw="; + }; + + cargoSha256 = "sha256-iLEIGuVB9ykNcwbXk/donDdBuMvitM54Ax6bszVGaO0="; + + nativeBuildInputs = lib.optionals stdenv.isLinux [ pkg-config ]; + + buildInputs = lib.optionals stdenv.isLinux [ openssl ] + ++ lib.optionals stdenv.isDarwin [ Security ]; + + meta = with lib; { + description = "An article extractor in Rust"; + homepage = "https://github.com/hipstermojo/paperoni"; + license = licenses.mit; + maintainers = [ maintainers.marsam ]; + }; +} diff --git a/pkgs/tools/text/rs/default.nix b/pkgs/tools/text/rs/default.nix index 9aca92922a5..141d72dfe07 100644 --- a/pkgs/tools/text/rs/default.nix +++ b/pkgs/tools/text/rs/default.nix @@ -1,4 +1,9 @@ -{ lib, stdenv, fetchurl, libbsd }: +{ lib +, stdenv +, fetchurl +, installShellFiles +, libbsd +}: stdenv.mkDerivation rec { pname = "rs"; @@ -9,18 +14,29 @@ stdenv.mkDerivation rec { sha256 = "0gxwlfk7bzivpp2260w2r6gkyl7vdi05cggn1fijfnp8kzf1b4li"; }; + nativeBuildInputs = [ installShellFiles ]; + buildInputs = [ libbsd ]; buildPhase = '' + runHook preBuild + ${stdenv.cc}/bin/cc utf8.c rs.c -o rs -lbsd + + runHook postBuild ''; installPhase = '' + runHook preInstall + install -Dm 755 rs -t $out/bin - install -Dm 644 rs.1 -t $out/share/man/man1 + installManPage rs.1 + + runHook postInstall ''; meta = with lib; { + homepage = "http://www.mirbsd.org/htman/i386/man1/rs.htm"; description = "Reshape a data array from standard input"; longDescription = '' rs reads the standard input, interpreting each line as a row of blank- @@ -43,8 +59,6 @@ stdenv.mkDerivation rec { to control presentation of the output columns, including transposition of the rows and columns. ''; - - homepage = "https://www.mirbsd.org/htman/i386/man1/rs.htm"; license = licenses.bsd3; maintainers = with maintainers; [ AndersonTorres ]; platforms = platforms.unix; diff --git a/pkgs/tools/text/tab/default.nix b/pkgs/tools/text/tab/default.nix index 18d3e3d004a..b70171e2908 100644 --- a/pkgs/tools/text/tab/default.nix +++ b/pkgs/tools/text/tab/default.nix @@ -1,24 +1,20 @@ { lib, stdenv, fetchFromGitHub, python3 }: stdenv.mkDerivation rec { - version = "9.0"; + version = "9.1"; pname = "tab"; src = fetchFromGitHub { owner = "ivan-tkatchev"; repo = pname; rev = version; - sha256 = "sha256-2keVGPRYV2KCeJ+LgAcl74cjW5wvp6Rmy7VNMtdliBE="; + sha256 = "sha256-AhgWeV/ojB8jM16A5ggrOD1YjWfRVcoQbkd3S2bgdyE="; }; checkInputs = [ python3 ]; doCheck = !stdenv.isDarwin; - preCheck = '' - substituteInPlace Makefile --replace "python2 go2.py" "python go.py" - ''; - checkTarget = "test"; installPhase = '' @@ -32,7 +28,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Programming language/shell calculator"; - homepage = "https://tkatchev.bitbucket.io/tab/"; + homepage = "http://tab-lang.xyz"; license = licenses.boost; maintainers = with maintainers; [ mstarzyk ]; platforms = with platforms; unix; diff --git a/pkgs/tools/text/vale/default.nix b/pkgs/tools/text/vale/default.nix index dac2cfc0d96..f53816c46f2 100644 --- a/pkgs/tools/text/vale/default.nix +++ b/pkgs/tools/text/vale/default.nix @@ -2,7 +2,7 @@ buildGoModule rec { pname = "vale"; - version = "2.16.0"; + version = "2.17.0"; subPackages = [ "cmd/vale" ]; outputs = [ "out" "data" ]; @@ -11,10 +11,10 @@ buildGoModule rec { owner = "errata-ai"; repo = "vale"; rev = "v${version}"; - sha256 = "sha256-kqyktQxQX4/jBj6vBw1VXRzD5D3wfLwnfi+QKgEqN5A="; + sha256 = "sha256-PUaIx6rEaLz0HUxkglsVHw0Kx/ovI2f4Yhknuysr5Gs="; }; - vendorSha256 = "sha256-EFuzbSVIhsGUJ8a2YoQHOq7BQpOHV43r9VKynR8UZ7k="; + vendorSha256 = "sha256-zdgLWEArmtHTDM844LoSJwKp0UGoAR8bHnFOSlrrjdg="; postInstall = '' mkdir -p $data/share/vale diff --git a/pkgs/tools/text/xml/xmldiff/default.nix b/pkgs/tools/text/xml/xmldiff/default.nix index 5814435e111..d9dbd70b648 100644 --- a/pkgs/tools/text/xml/xmldiff/default.nix +++ b/pkgs/tools/text/xml/xmldiff/default.nix @@ -2,6 +2,7 @@ , buildPythonApplication , fetchFromGitHub , lxml +, setuptools , six }: @@ -16,8 +17,9 @@ buildPythonApplication rec { hash = "sha256-xqudHYfwOce2C0pcFzId0JDIIC6R5bllmVKsH+CvTdE="; }; - buildInputs = [ + propagatedBuildInputs = [ lxml + setuptools six ]; @@ -36,6 +38,6 @@ buildPythonApplication rec { readable diffs in those situations. ''; license = licenses.mit; - maintainers = with maintainers; [ AndersonTorres ]; + maintainers = with maintainers; [ AndersonTorres anpryl ]; }; } diff --git a/pkgs/tools/text/xurls/default.nix b/pkgs/tools/text/xurls/default.nix index 774626561c9..4da65d9af02 100644 --- a/pkgs/tools/text/xurls/default.nix +++ b/pkgs/tools/text/xurls/default.nix @@ -1,24 +1,24 @@ -{ buildGoPackage, lib, fetchFromGitHub }: +{ buildGoModule, lib, fetchFromGitHub }: -buildGoPackage rec { - version = "2.3.0"; +buildGoModule rec { pname = "xurls"; + version = "2.4.0"; src = fetchFromGitHub { owner = "mvdan"; repo = "xurls"; rev = "v${version}"; - sha256 = "sha256-+oWYW7ZigkNS6VADNmVwarIsYyd730RAdDwnNIAYvlA="; + sha256 = "sha256-lyDcwbdVKyFRfsYCcPAgIgvrEEdwK0lxmJTvMJcFBCw="; }; - goPackagePath = "mvdan.cc/xurls/v2"; - subPackages = [ "cmd/xurls" ]; + vendorSha256 = "sha256-lJzgJxW/GW3J09uKQGoEX+UsHnB1pGG71U/zy4b9rXo="; + + ldflags = [ "-s" "-w" ]; meta = with lib; { description = "Extract urls from text"; homepage = "https://github.com/mvdan/xurls"; maintainers = with maintainers; [ koral ]; - platforms = platforms.unix; license = licenses.bsd3; }; } diff --git a/pkgs/tools/typesetting/sile/default.nix b/pkgs/tools/typesetting/sile/default.nix index 4bff8ab3ae3..32374149190 100644 --- a/pkgs/tools/typesetting/sile/default.nix +++ b/pkgs/tools/typesetting/sile/default.nix @@ -18,7 +18,6 @@ let luaEnv = lua.withPackages(ps: with ps; [ cassowary cosmo - compat53 linenoise lpeg lua-zlib @@ -33,6 +32,10 @@ let penlight stdlib vstruct + ] ++ lib.optionals (lib.versionOlder lua.luaversion "5.2") [ + bit32 + ] ++ lib.optionals (lib.versionOlder lua.luaversion "5.3") [ + compat53 ]); in diff --git a/pkgs/tools/typesetting/soupault/default.nix b/pkgs/tools/typesetting/soupault/default.nix index a511456e02e..d40eb4aac80 100644 --- a/pkgs/tools/typesetting/soupault/default.nix +++ b/pkgs/tools/typesetting/soupault/default.nix @@ -1,20 +1,27 @@ -{ fetchFromGitHub, ocamlPackages, lib }: +{ lib +, fetchFromGitea +, ocamlPackages +}: ocamlPackages.buildDunePackage rec { pname = "soupault"; - version = "3.2.0"; + version = "4.0.0"; useDune2 = true; - src = fetchFromGitHub { - owner = "dmbaturin"; + minimalOCamlVersion = "4.08"; + + src = fetchFromGitea { + domain = "codeberg.org"; + owner = "PataphysicalSociety"; repo = pname; rev = version; - sha256 = "sha256-T1K/ntCK19LfPmMtaAa9c1JjSL+5dax2SNhM4yUFln4="; + sha256 = "sha256-txNKAZMd3LReFoAtf6iaoDF+Ku3IUNDzBWUqGC2ePKw="; }; buildInputs = with ocamlPackages; [ base64 + camomile containers ezjsonm fileutils @@ -32,11 +39,10 @@ ocamlPackages.buildDunePackage rec { yaml ]; - meta = with lib; { + meta = { description = "A tool that helps you create and manage static websites"; homepage = "https://soupault.app/"; - license = licenses.mit; - maintainers = [ maintainers.toastal ]; + license = lib.licenses.mit; + maintainers = with lib.maintainers; [ toastal ]; }; } - diff --git a/pkgs/tools/virtualization/govc/default.nix b/pkgs/tools/virtualization/govc/default.nix index 00330f7d1a4..32cfb4aa662 100644 --- a/pkgs/tools/virtualization/govc/default.nix +++ b/pkgs/tools/virtualization/govc/default.nix @@ -1,10 +1,8 @@ -{ lib, fetchFromGitHub, buildGoPackage }: +{ lib, fetchFromGitHub, buildGoModule }: -buildGoPackage rec { +buildGoModule rec { pname = "govc"; - version = "0.25.0"; - - goPackagePath = "github.com/vmware/govmomi"; + version = "0.28.0"; subPackages = [ "govc" ]; @@ -12,9 +10,17 @@ buildGoPackage rec { rev = "v${version}"; owner = "vmware"; repo = "govmomi"; - sha256 = "sha256-Ri8snbmgcAZmdumKzBl3P6gf/eZgwdgg7V+ijyeZjks="; + sha256 = "sha256-uK1JsBJC9O8dEJbAnyeMoolKZ2WhEPsDo/is/I+gfHg="; }; + vendorSha256 = "sha256-jbGqQITAhyBLoDa3cKU5gK+4WGgoGSCyFtzeoXx8e7k="; + + ldflags = [ + "-s" + "-w" + "-X github.com/vmware/govmomi/govc/flags.BuildVersion=${version}" + ]; + meta = { description = "A vSphere CLI built on top of govmomi"; homepage = "https://github.com/vmware/govmomi/tree/master/govc"; diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix index 9bd5066863d..521317b62d7 100644 --- a/pkgs/top-level/aliases.nix +++ b/pkgs/top-level/aliases.nix @@ -94,6 +94,7 @@ mapAliases ({ avxsynth = throw "avxsynth was removed because it was broken"; # Added 2021-05-18 awesome-4-0 = awesome; # Added 2022-05-05 aws-okta = throw "aws-okta is on indefinite hiatus. See https://github.com/segmentio/aws-okta/issues/278"; # Added 2022-04-05; + axoloti = throw "axoloti has been removed: abandoned by upstream"; # Added 2022-05-13 azureus = throw "azureus is now known as vuze and the version in nixpkgs was really outdated"; # Added 2021-08-02 ### B ### @@ -111,6 +112,7 @@ mapAliases ({ bazel_0_29 = throw "bazel 0.29 is past end of life as it is not an lts version"; # Added 2022-05-09 bazel_1 = throw "bazel 1 is past end of life as it is not an lts version"; # Added 2022-05-09 bcat = throw "bcat has been removed because upstream is dead"; # Added 2021-08-22 + beetsExternalPlugins = throw "beetsExternalPlugins has been deprecated, use beetsPackages.$pluginname"; # Added 2022-05-07 beret = throw "beret has been removed"; # Added 2021-11-16 bin_replace_string = throw "bin_replace_string has been removed: deleted by upstream"; # Added 2022-01-07 bird2 = bird; # Added 2022-02-21 @@ -127,6 +129,7 @@ mapAliases ({ bro = zeek; # Added 2019-09-29 btrfsProgs = throw "'btrfsProgs' has been renamed to/replaced by 'btrfs-progs'"; # Converted to throw 2022-02-22 bud = throw "bud has been removed: abandoned by upstream"; # Added 2022-03-14 + inherit (libsForQt5.mauiPackages) buho; # added 2022-05-17 buttersink = throw "buttersink has been removed: abandoned by upstream"; # Added 2022-04-05 # bitwarden_rs renamed to vaultwarden with release 1.21.0 (2021-04-30) @@ -168,6 +171,8 @@ mapAliases ({ cifs_utils = throw "'cifs_utils' has been renamed to/replaced by 'cifs-utils'"; # Converted to throw 2022-02-22 cipherscan = throw "cipherscan was removed from nixpkgs, as it was unmaintained"; # added 2021-12-11 ckb = throw "'ckb' has been renamed to/replaced by 'ckb-next'"; # Converted to throw 2022-02-22 + inherit (libsForQt5.mauiPackages) clip; # added 2022-05-17 + cpp-ipfs-api = cpp-ipfs-http-client; # Project has been renamed. Added 2022-05-15 creddump = throw "creddump has been removed from nixpkgs as the upstream has abandoned the project"; # Added 2022-01-01 # these are for convenience, not for backward compat and shouldn't expire @@ -190,6 +195,7 @@ mapAliases ({ clutter_gtk = throw "'clutter_gtk' has been renamed to/replaced by 'clutter-gtk'"; # Converted to throw 2022-02-22 cmakeWithQt4Gui = throw "cmakeWithQt4Gui has been removed in favor of cmakeWithGui (Qt 5)"; # Added 2021-05 codimd = hedgedoc; # Added 2020-11-29 + inherit (libsForQt5.mauiPackages) communicator; # added 2022-05-17 compton = picom; # Added 2019-12-02 compton-git = throw "'compton-git' has been renamed to/replaced by 'compton'"; # Converted to throw 2022-02-22 concurrencykit = libck; # Added 2021-03 @@ -205,6 +211,7 @@ mapAliases ({ cpuminer-multi = throw "cpuminer-multi has been removed: deleted by upstream"; # Added 2022-01-07 crafty = throw "crafty has been removed: deleted by upstream"; # Added 2022-01-07 cryptol = throw "cryptol was removed due to prolonged broken build"; # Added 2020-08-21 + ctl = throw "ctl has been removed: abandoned by upstream"; # Added 2022-05-13 # CUDA Toolkit cudatoolkit_6 = throw "cudatoolkit_6 has been removed in favor of newer versions"; # Added 2021-02-14 @@ -315,8 +322,10 @@ mapAliases ({ demjson = with python3Packages; toPythonApplication demjson; # Added 2022-01-18 desktop_file_utils = throw "'desktop_file_utils' has been renamed to/replaced by 'desktop-file-utils'"; # Converted to throw 2022-02-22 devicemapper = throw "'devicemapper' has been renamed to/replaced by 'lvm2'"; # Converted to throw 2022-02-22 + dfu-util-axoloti = throw "dfu-util-axoloti has been removed: abandoned by upstream"; # Added 2022-05-13 dhall-text = throw "'dhall-text' has been deprecated in favor of the 'dhall text' command from 'dhall'"; # Added 2022-03-26 digikam5 = throw "'digikam5' has been renamed to/replaced by 'digikam'"; # Converted to throw 2022-02-22 + dirmngr = throw "dirmngr has been removed: merged into gnupg"; # Added 2022-05-13 disper = throw "disper has been removed: abandoned by upstream"; # Added 2022-03-18 displaycal = throw "displaycal has been removed from nixpkgs, as it hasn't migrated to python3"; # Added 2022-01-12 dmtx = throw "'dmtx' has been renamed to/replaced by 'dmtx-utils'"; # Converted to throw 2022-02-22 @@ -562,6 +571,8 @@ mapAliases ({ icecat-bin = throw "icecat-bin has been removed, the binary builds are not maintained upstream"; # Added 2022-02-15 icedtea8_web = adoptopenjdk-icedtea-web; # Added 2019-08-21 icedtea_web = adoptopenjdk-icedtea-web; # Added 2019-08-21 + icu59 = throw "icu59 has been removed, use a more recent version instead"; # Added 2022-05-14 + icu65 = throw "icu65 has been removed, use a more recent version instead"; # Added 2022-05-14 idea = throw "'idea' has been renamed to/replaced by 'jetbrains'"; # Converted to throw 2022-02-22 imapproxy = throw "imapproxy has been removed because it did not support a supported openssl version"; # added 2021-12-15 imagemagick7Big = imagemagickBig; # Added 2021-02-22 @@ -570,6 +581,7 @@ mapAliases ({ impressive = throw "impressive has been removed due to lack of released python 2 support and maintainership in nixpkgs"; # Added 2022-01-27 i-score = throw "i-score has been removed: abandoned upstream"; # Added 2020-11-21 inboxer = throw "inboxer has been removed as it is no longer maintained and no longer works as Google shut down the inbox service this package wrapped"; + index-fm = libsForQt5.mauiPackages.index; # added 2022-05-17 infiniband-diags = rdma-core; # Added 2019-08-09 ino = throw "ino has been removed from nixpkgs, the project is stuck on python2 and upstream has archived the project"; # Added 2022-01-12 inotifyTools = inotify-tools; @@ -673,6 +685,7 @@ mapAliases ({ liblastfm = libsForQt5.liblastfm; # Added 2020-06-14 liblrdf = throw "'liblrdf' has been renamed to/replaced by 'lrdf'"; # Converted to throw 2022-02-22 libmsgpack = throw "'libmsgpack' has been renamed to/replaced by 'msgpack'"; # Converted to throw 2022-02-22 + libnih = throw "'libnih' has been removed"; # Converted to throw 2022-05-17 libosmpbf = throw "libosmpbf was removed because it is no longer required by osrm-backend"; libpng_apng = throw "libpng_apng has been removed, because it is equivalent to libpng"; # Added 2021-03-21 libpulseaudio-vanilla = libpulseaudio; # Added 2022-04-20 @@ -695,6 +708,7 @@ mapAliases ({ libudev = throw "'libudev' has been renamed to/replaced by 'udev'"; # Converted to throw 2022-02-22 libungif = giflib; # Added 2020-02-12 libusb = libusb1; # Added 2020-04-28 + libusb1-axoloti = throw "libusb1-axoloti has been removed: axoloti has been removed"; # Added 2022-05-13 libva-full = throw "'libva-full' has been renamed to/replaced by 'libva'"; # Converted to throw 2022-02-22 libva1-full = throw "'libva1-full' has been renamed to/replaced by 'libva1'"; # Converted to throw 2022-02-22 libwnck3 = libwnck; @@ -797,6 +811,7 @@ mapAliases ({ matcha = throw "matcha was renamed to matcha-gtk-theme"; # added 2020-05-09 mathics = throw "mathics has been removed from nixpkgs, as it's unmaintained"; # Added 2020-08-15 matrique = spectral; # Added 2020-01-27 + maui-nota = libsForQt5.mauiPackages.nota; # added 2022-05-17 mcgrid = throw "mcgrid has been removed from nixpkgs, as it's not compatible with rivet 3"; # Added 2020-05-23 mediatomb = throw "mediatomb is no longer maintained upstream, use gerbera instead"; # added 2022-01-04 meme = meme-image-generator; # Added 2021-04-21 @@ -863,6 +878,7 @@ mapAliases ({ navit = throw "navit has been removed from nixpkgs, due to being unmaintained"; # Added 2021-06-07 ncat = throw "'ncat' has been renamed to/replaced by 'nmap'"; # Converted to throw 2022-02-22 neap = throw "neap was removed from nixpkgs, as it relies on python2"; # Added 2022-01-12 + neochat = libsForQt5.plasmaMobileGear.neochat; # added 2022-05-10 netease-cloud-music = throw "netease-cloud-music has been removed together with deepin"; # Added 2020-08-31 networkmanager_fortisslvpn = throw "'networkmanager_fortisslvpn' has been renamed to/replaced by 'networkmanager-fortisslvpn'"; # Converted to throw 2022-02-22 networkmanager_iodine = throw "'networkmanager_iodine' has been renamed to/replaced by 'networkmanager-iodine'"; # Converted to throw 2022-02-22 @@ -899,6 +915,7 @@ mapAliases ({ ### O ### oathToolkit = oath-toolkit; # Added 2022-04-04 + oci-image-tool = throw "oci-image-tool is no longer actively maintained, and has had major deficiencies for several years."; # Added 2022-05-14; oracleXE = throw "oracleXE has been removed, as it's heavily outdated and unmaintained"; # Added 2020-10-09 OVMF-CSM = throw "OVMF-CSM has been removed in favor of OVMFFull"; # Added 2021-10-16 OVMF-secureBoot = throw "OVMF-secureBoot has been removed in favor of OVMFFull"; # Added 2021-10-16 @@ -1190,6 +1207,7 @@ mapAliases ({ seeks = throw "seeks has been removed from nixpkgs, as it was unmaintained"; # Added 2020-06-21 sepolgen = throw "sepolgen was merged into selinux-python"; # Added 2021-11-11 shared_mime_info = throw "'shared_mime_info' has been renamed to/replaced by 'shared-mime-info'"; # Converted to throw 2022-02-22 + inherit (libsForQt5.mauiPackages) shelf; # added 2022-05-17 shellinabox = throw "shellinabox has been removed from nixpkgs, as it was unmaintained upstream"; # Added 2021-12-15 sickbeard = throw "sickbeard has been removed from nixpkgs, as it was unmaintained"; # Added 2022-01-01 sickrage = throw "sickbeard has been removed from nixpkgs, as it was unmaintained"; # Added 2022-01-01 @@ -1378,6 +1396,7 @@ mapAliases ({ vnc2flv = throw "vnc2flv has been removed: abandoned by upstream"; # Added 2022-03-21 vorbisTools = throw "'vorbisTools' has been renamed to/replaced by 'vorbis-tools'"; # Converted to throw 2022-02-22 vtun = throw "vtune has been removed as it's unmaintained upstream"; # Added 2021-10-29 + inherit (libsForQt5.mauiPackages) vvave; # added 2022-05-17 ### W ### diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 142c98c5d93..294e077998a 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -294,6 +294,8 @@ with pkgs; catatonit = callPackage ../applications/virtualization/catatonit { }; + catppuccin-gtk = callPackage ../data/themes/catppuccin-gtk { }; + btdu = callPackage ../tools/misc/btdu { }; cereal = callPackage ../development/libraries/cereal { }; @@ -750,7 +752,9 @@ with pkgs; installShellFiles = callPackage ../build-support/install-shell-files {}; - lazydocker = callPackage ../tools/misc/lazydocker { }; + lazydocker = callPackage ../tools/misc/lazydocker { + buildGoModule = buildGo118Module; + }; ld-is-cc-hook = makeSetupHook { name = "ld-is-cc-hook"; } ../build-support/setup-hooks/ld-is-cc-hook.sh; @@ -808,6 +812,8 @@ with pkgs; sanitizers = [ ]; }; + compressFirmwareXz = callPackage ../build-support/kernel/compress-firmware-xz.nix { }; + makeModulesClosure = { kernel, firmware, rootModules, allowMissing ? false }: callPackage ../build-support/kernel/modules-closure.nix { inherit kernel firmware rootModules allowMissing; @@ -983,6 +989,8 @@ with pkgs; adafruit-ampy = callPackage ../tools/misc/adafruit-ampy { }; + addic7ed-cli = callPackage ../tools/misc/addic7ed-cli { }; + addlicense = callPackage ../tools/misc/addlicense { }; adlplug = callPackage ../applications/audio/adlplug { @@ -995,6 +1003,7 @@ with pkgs; arc_unpacker = callPackage ../tools/archivers/arc_unpacker { boost = boost16x; # checkPhase fails with Boost 1.77 + stdenv = if stdenv.cc.isGNU then gcc10Stdenv else stdenv; }; adminer = callPackage ../servers/adminer { }; @@ -1097,6 +1106,8 @@ with pkgs; arch-install-scripts = callPackage ../tools/misc/arch-install-scripts {}; + audible-cli = callPackage ../tools/misc/audible-cli { }; + auditwheel = callPackage ../tools/package-management/auditwheel { }; amidst = callPackage ../tools/games/minecraft/amidst { }; @@ -1421,7 +1432,6 @@ with pkgs; ares = callPackage ../applications/emulators/bsnes/ares { }; bsnes-hd = callPackage ../applications/emulators/bsnes/bsnes-hd { - inherit (gnome2) gtksourceview; inherit (darwin.apple_sdk.frameworks) Cocoa OpenAL; }; @@ -1916,6 +1926,10 @@ with pkgs; checkip = callPackage ../tools/networking/checkip { }; + crystfel = callPackage ../applications/science/physics/crystfel { }; + + crystfel-headless = callPackage ../applications/science/physics/crystfel { withGui = false; }; + ec2-api-tools = callPackage ../tools/virtualization/ec2-api-tools { }; ec2-ami-tools = callPackage ../tools/virtualization/ec2-ami-tools { }; @@ -1996,7 +2010,9 @@ with pkgs; bonnmotion = callPackage ../development/tools/misc/bonnmotion { }; - bonnie = callPackage ../tools/filesystems/bonnie { }; + bonnie = callPackage ../tools/filesystems/bonnie { + stdenv = if stdenv.cc.isGNU then gcc10Stdenv else stdenv; + }; botamusique = callPackage ../tools/audio/botamusique { }; @@ -2560,17 +2576,6 @@ with pkgs; libssl = openssl; }; - axoloti = callPackage ../applications/audio/axoloti { - gcc-arm-embedded = pkgsCross.arm-embedded.buildPackages.gcc; - binutils-arm-embedded = pkgsCross.arm-embedded.buildPackages.binutils; - jdk = jdk8; # TODO: remove override https://github.com/NixOS/nixpkgs/pull/89731 - }; - dfu-util-axoloti = callPackage ../applications/audio/axoloti/dfu-util.nix { }; - libusb1-axoloti = callPackage ../applications/audio/axoloti/libusb1.nix { - inherit (darwin) libobjc; - inherit (darwin.apple_sdk.frameworks) IOKit; - }; - b3sum = callPackage ../tools/security/b3sum {}; backblaze-b2 = callPackage ../development/tools/backblaze-b2 { }; @@ -2579,6 +2584,8 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) Security; }; + badrobot = callPackage ../tools/security/badrobot {}; + bao = callPackage ../tools/security/bao {}; bar = callPackage ../tools/system/bar {}; @@ -2791,7 +2798,7 @@ with pkgs; brutespray = callPackage ../tools/security/brutespray { }; - breakpointHook = assert stdenv.isLinux; + breakpointHook = assert stdenv.buildPlatform.isLinux; makeSetupHook { } ../build-support/setup-hooks/breakpoint-hook.sh; btrfs-progs = callPackage ../tools/filesystems/btrfs-progs { }; @@ -4017,6 +4024,8 @@ with pkgs; notify = callPackage ../tools/misc/notify { }; + npins = callPackage ../tools/nix/npins { }; + nrsc5 = callPackage ../applications/misc/nrsc5 { }; nsync = callPackage ../development/libraries/nsync { }; @@ -4409,28 +4418,8 @@ with pkgs; bee-clef = callPackage ../applications/networking/bee/bee-clef.nix { }; - beets = callPackage ../tools/audio/beets { - pythonPackages = python3Packages; - }; - - beetsExternalPlugins = - let - pluginArgs = { - # This is a stripped down beets for testing of the external plugins. - beets = (beets.override { - enableAlternatives = false; - enableCopyArtifacts = false; - enableExtraFiles = false; - }).overrideAttrs (lib.const { - doInstallCheck = false; - }); - pythonPackages = python3Packages; - }; - in lib.recurseIntoAttrs { - alternatives = callPackage ../tools/audio/beets/plugins/alternatives.nix pluginArgs; - copyartifacts = callPackage ../tools/audio/beets/plugins/copyartifacts.nix pluginArgs; - extrafiles = callPackage ../tools/audio/beets/plugins/extrafiles.nix pluginArgs; - }; + beetsPackages = lib.recurseIntoAttrs (callPackage ../tools/audio/beets { }); + inherit (beetsPackages) beets beets-unstable; bento4 = callPackage ../tools/video/bento4 { }; @@ -5199,6 +5188,8 @@ with pkgs; inherit (python2Packages) mutagen python wrapPython; }; + dsp = callPackage ../tools/audio/dsp { }; + dirdiff = callPackage ../tools/text/dirdiff { tcl = tcl-8_5; tk = tk-8_5; @@ -5210,8 +5201,6 @@ with pkgs; wgetpaste = callPackage ../tools/text/wgetpaste { }; - dirmngr = callPackage ../tools/security/dirmngr { }; - dismap = callPackage ../tools/security/dismap { }; dirvish = callPackage ../tools/backup/dirvish { }; @@ -5311,6 +5300,10 @@ with pkgs; autoreconfHook = buildPackages.autoreconfHook269; }; + dump_syms = callPackage ../development/tools/dump_syms { + inherit (darwin.apple_sdk.frameworks) Security; + }; + dumptorrent = callPackage ../tools/misc/dumptorrent { }; duo-unix = callPackage ../tools/security/duo-unix { }; @@ -5435,7 +5428,7 @@ with pkgs; schildichat-desktop = callPackage ../applications/networking/instant-messengers/schildichat/schildichat-desktop.nix { inherit (darwin.apple_sdk.frameworks) Security AppKit CoreServices; - electron = electron_15; + electron = electron_17; }; schildichat-desktop-wayland = writeScriptBin "schildichat-desktop" '' #!/bin/sh @@ -5473,6 +5466,7 @@ with pkgs; trivy = callPackage ../tools/admin/trivy { buildGoModule = buildGo118Module; + inherit (darwin.apple_sdk.frameworks) CoreFoundation Security; }; trompeloeil = callPackage ../development/libraries/trompeloeil { }; @@ -5646,6 +5640,8 @@ with pkgs; ethtool = callPackage ../tools/misc/ethtool { }; + ets = callPackage ../tools/misc/ets { }; + ettercap = callPackage ../applications/networking/sniffers/ettercap { }; eventstat = callPackage ../os-specific/linux/eventstat { }; @@ -6157,7 +6153,9 @@ with pkgs; gfbgraph = callPackage ../development/libraries/gfbgraph { }; - gfold = callPackage ../applications/version-management/git-and-tools/gfold { }; + gfold = callPackage ../applications/version-management/git-and-tools/gfold { + inherit (darwin.apple_sdk.frameworks) Security; + }; ggobi = callPackage ../tools/graphics/ggobi { }; @@ -7281,6 +7279,8 @@ with pkgs; jira-cli = callPackage ../development/tools/jira_cli { }; + jira-cli-go = callPackage ../development/tools/jira-cli-go { }; + jirafeau = callPackage ../servers/web-apps/jirafeau { }; jitterentropy = callPackage ../development/libraries/jitterentropy { }; @@ -7768,7 +7768,9 @@ with pkgs; mmv-go = callPackage ../tools/misc/mmv-go { }; - mob = callPackage ../applications/misc/mob { }; + mob = callPackage ../applications/misc/mob { + buildGoModule = buildGo116Module; + }; most = callPackage ../tools/misc/most { }; @@ -7778,6 +7780,10 @@ with pkgs; mtail = callPackage ../servers/monitoring/mtail { }; + mujmap = callPackage ../applications/networking/mujmap { + inherit (darwin.apple_sdk.frameworks) Security; + }; + multitail = callPackage ../tools/misc/multitail { }; mx-puppet-discord = callPackage ../servers/mx-puppet-discord { }; @@ -7853,10 +7859,6 @@ with pkgs; nodejs-slim-16_x = callPackage ../development/web/nodejs/v16.nix { enableNpm = false; }; - nodejs-17_x = callPackage ../development/web/nodejs/v17.nix { }; - nodejs-slim-17_x = callPackage ../development/web/nodejs/v17.nix { - enableNpm = false; - }; nodejs-18_x = callPackage ../development/web/nodejs/v18.nix { }; nodejs-slim-18_x = callPackage ../development/web/nodejs/v18.nix { enableNpm = false; @@ -8471,6 +8473,8 @@ with pkgs; mutagen = callPackage ../tools/misc/mutagen { }; + mutagen-compose = callPackage ../tools/misc/mutagen-compose { }; + mycli = callPackage ../tools/admin/mycli { }; mycrypto = callPackage ../applications/blockchains/mycrypto { }; @@ -8516,8 +8520,6 @@ with pkgs; neo-cowsay = callPackage ../tools/misc/neo-cowsay { }; - neochat = libsForQt5.callPackage ../applications/networking/instant-messengers/neochat { }; - neofetch = callPackage ../tools/misc/neofetch { }; nerdfonts = callPackage ../data/fonts/nerdfonts { }; @@ -8621,7 +8623,7 @@ with pkgs; grocy = callPackage ../servers/grocy { }; inherit (callPackage ../servers/nextcloud {}) - nextcloud21 nextcloud22 nextcloud23; + nextcloud22 nextcloud23 nextcloud24; nextcloud-client = libsForQt5.callPackage ../applications/networking/nextcloud-client { }; @@ -8734,6 +8736,8 @@ with pkgs; pgbadger = perlPackages.callPackage ../tools/misc/pgbadger { }; + pffft = callPackage ../development/libraries/pffft { }; + phash = callPackage ../development/libraries/phash { }; pnmixer = callPackage ../tools/audio/pnmixer { }; @@ -8874,8 +8878,6 @@ with pkgs; buildGoModule = buildGo116Module; }; - oci-image-tool = callPackage ../tools/misc/oci-image-tool { }; - ocproxy = callPackage ../tools/networking/ocproxy { }; ocserv = callPackage ../tools/networking/ocserv { }; @@ -9175,6 +9177,10 @@ with pkgs; paperless-ngx = callPackage ../applications/office/paperless-ngx { }; + paperoni = callPackage ../tools/text/paperoni { + inherit (darwin.apple_sdk.frameworks) Security; + }; + paperwork = callPackage ../applications/office/paperwork/paperwork-gtk.nix { }; papertrail = callPackage ../tools/text/papertrail { }; @@ -9823,6 +9829,8 @@ with pkgs; rst2html5 = callPackage ../tools/text/rst2html5 { }; + rstcheck = with python3Packages; toPythonApplication rstcheck; + rt = callPackage ../servers/rt { }; rtmpdump = callPackage ../tools/video/rtmpdump { }; @@ -10283,7 +10291,7 @@ with pkgs; silc_server = callPackage ../servers/silc-server { }; sile = callPackage ../tools/typesetting/sile { - lua = lua5_4; + lua = lua5_3; }; silver-searcher = callPackage ../tools/text/silver-searcher { }; @@ -10987,7 +10995,7 @@ with pkgs; toybox = callPackage ../tools/misc/toybox { }; - tpmmanager = callPackage ../applications/misc/tpmmanager { }; + tpmmanager = libsForQt5.callPackage ../applications/misc/tpmmanager { }; tpm-quote-tools = callPackage ../tools/security/tpm-quote-tools { }; @@ -11746,7 +11754,9 @@ with pkgs; wipe = callPackage ../tools/security/wipe { }; - wireguard-go = callPackage ../tools/networking/wireguard-go { }; + wireguard-go = callPackage ../tools/networking/wireguard-go { + buildGoModule = buildGo118Module; + }; wkhtmltopdf = libsForQt514.callPackage ../tools/graphics/wkhtmltopdf { }; @@ -12986,8 +12996,9 @@ with pkgs; gcc-arm-embedded-10 = callPackage ../development/compilers/gcc-arm-embedded/10 {}; gcc-arm-embedded = gcc-arm-embedded-10; - gdc = gdc9; - gdc9 = wrapCC (gcc9.cc.override { + # Has to match the default gcc so that there are no linking errors when + # using C/C++ libraries in D packages + gdc = wrapCC (gcc.cc.override { name = "gdc"; langCC = false; langC = false; @@ -14003,8 +14014,9 @@ with pkgs; tinycc = callPackage ../development/compilers/tinycc { }; tinygo = callPackage ../development/compilers/tinygo { - inherit (llvmPackages_10) llvm clang-unwrapped lld; + llvmPackages = llvmPackages_14; avrgcc = pkgsCross.avr.buildPackages.gcc; + wasi-libc = pkgsCross.wasi32.wasilibc; }; tinyscheme = callPackage ../development/interpreters/tinyscheme { @@ -14230,7 +14242,7 @@ with pkgs; }; inherit (beam.interpreters) - erlang erlangR24 erlangR23 erlangR22 erlangR21 + erlang erlangR25 erlangR24 erlangR23 erlangR22 erlangR21 erlang_odbc erlang_javac erlang_odbc_javac erlang_basho_R16B02 elixir elixir_1_13 elixir_1_12 elixir_1_11 elixir_1_10 elixir_1_9 elixir_ls; @@ -14512,6 +14524,8 @@ with pkgs; poetry2conda = python3Packages.callPackage ../development/python-modules/poetry2conda { }; + pip-audit = callPackage ../development/tools/pip-audit {}; + pipenv = callPackage ../development/tools/pipenv {}; pipewire = callPackage ../development/libraries/pipewire { @@ -14801,7 +14815,14 @@ with pkgs; autoadb = callPackage ../misc/autoadb { }; ansible = ansible_2_12; - ansible_2_12 = python3Packages.toPythonApplication python3Packages.ansible-core; + ansible_2_13 = python3Packages.toPythonApplication python3Packages.ansible-core; + ansible_2_12 = python3Packages.toPythonApplication (python3Packages.ansible-core.overridePythonAttrs (oldAttrs: rec { + version = "2.12.5"; + src = oldAttrs.src.override { + inherit version; + hash = "sha256-HMyZRPEBMxra0e1A1axmqBSRMwUq402wJnp0qnO+67M="; + }; + })); ansible-doctor = with python3.pkgs; toPythonApplication ansible-doctor; @@ -15166,7 +15187,9 @@ with pkgs; cloud-nuke = callPackage ../development/tools/cloud-nuke { }; - cloudcompare = libsForQt5.callPackage ../applications/graphics/cloudcompare {}; + cloudcompare = libsForQt5.callPackage ../applications/graphics/cloudcompare { + pdal = pdal_2_3; + }; cloudflare-warp = callPackage ../tools/networking/cloudflare-warp { }; @@ -16568,10 +16591,7 @@ with pkgs; arrayfire = callPackage ../development/libraries/arrayfire {}; - arrow-cpp = callPackage ../development/libraries/arrow-cpp ({ - } // lib.optionalAttrs (stdenv.hostPlatform.isi686 && stdenv.cc.isGNU) { - stdenv = overrideCC stdenv buildPackages.gcc6; # hidden symbol `__divmoddi4' - }); + arrow-cpp = callPackage ../development/libraries/arrow-cpp {}; arsenal = callPackage ../tools/security/arsenal { }; @@ -16825,7 +16845,9 @@ with pkgs; classads = callPackage ../development/libraries/classads { }; - clfft = callPackage ../development/libraries/clfft { }; + clfft = callPackage ../development/libraries/clfft { + stdenv = if stdenv.cc.isGNU then gcc10Stdenv else stdenv; + }; clipp = callPackage ../development/libraries/clipp { }; @@ -16878,8 +16900,6 @@ with pkgs; python-cosmopolitan = callPackage ../development/interpreters/python-cosmopolitan { }; - ctl = callPackage ../development/libraries/ctl { }; - ctpp2 = callPackage ../development/libraries/ctpp2 { }; ctpl = callPackage ../development/libraries/ctpl { }; @@ -16892,7 +16912,7 @@ with pkgs; cpp-hocon = callPackage ../development/libraries/cpp-hocon { }; - cpp-ipfs-api = callPackage ../development/libraries/cpp-ipfs-api { }; + cpp-ipfs-http-client = callPackage ../development/libraries/cpp-ipfs-http-client { }; cpp-netlib = callPackage ../development/libraries/cpp-netlib { boost = boost169; # fatal error: 'boost/asio/stream_socket_service.hpp' file not found @@ -17568,7 +17588,7 @@ with pkgs; grpc = callPackage ../development/libraries/grpc { # grpc builds with c++14 so abseil must also be built that way - abseil-cpp = abseil-cpp.override { + abseil-cpp = abseil-cpp_202111.override { cxxStandard = "14"; }; }; @@ -17864,7 +17884,7 @@ with pkgs; hwloc = callPackage ../development/libraries/hwloc {}; - hydra_unstable = callPackage ../development/tools/misc/hydra/unstable.nix { nix = nixVersions.nix_2_6; }; + hydra_unstable = callPackage ../development/tools/misc/hydra/unstable.nix { nix = nixVersions.nix_2_8; }; hydra-cli = callPackage ../development/tools/misc/hydra-cli { }; @@ -17878,65 +17898,34 @@ with pkgs; icu58 = callPackage (import ../development/libraries/icu/58.nix fetchurl) ({ nativeBuildRoot = buildPackages.icu58.override { buildRootOnly = true; }; - } // - (lib.optionalAttrs (stdenv.hostPlatform.isi686 && stdenv.cc.isGNU) { - stdenv = gcc6Stdenv; # with gcc-7: undefined reference to `__divmoddi4' - })); - icu59 = callPackage ../development/libraries/icu/59.nix ({ - nativeBuildRoot = buildPackages.icu59.override { buildRootOnly = true; }; - } // (lib.optionalAttrs (stdenv.hostPlatform.isi686 && stdenv.cc.isGNU) { - stdenv = gcc6Stdenv; # with gcc-7: undefined reference to `__divmoddi4' - })); + }); icu60 = callPackage ../development/libraries/icu/60.nix ({ nativeBuildRoot = buildPackages.icu60.override { buildRootOnly = true; }; - } // (lib.optionalAttrs (stdenv.hostPlatform.isi686 && stdenv.cc.isGNU) { - stdenv = gcc6Stdenv; # with gcc-7: undefined reference to `__divmoddi4' - })); + }); icu63 = callPackage ../development/libraries/icu/63.nix ({ nativeBuildRoot = buildPackages.icu63.override { buildRootOnly = true; }; - } // (lib.optionalAttrs (stdenv.hostPlatform.isi686 && stdenv.cc.isGNU) { - stdenv = gcc6Stdenv; # with gcc-7: undefined reference to `__divmoddi4' - })); + }); icu64 = callPackage ../development/libraries/icu/64.nix ({ nativeBuildRoot = buildPackages.icu64.override { buildRootOnly = true; }; - } // (lib.optionalAttrs (stdenv.hostPlatform.isi686 && stdenv.cc.isGNU) { - stdenv = gcc6Stdenv; # with gcc-7: undefined reference to `__divmoddi4' - })); - icu65 = callPackage ../development/libraries/icu/65.nix ({ - nativeBuildRoot = buildPackages.icu65.override { buildRootOnly = true; }; - } // (lib.optionalAttrs (stdenv.hostPlatform.isi686 && stdenv.cc.isGNU) { - stdenv = gcc6Stdenv; # with gcc-7: undefined reference to `__divmoddi4' - })); + }); icu66 = callPackage ../development/libraries/icu/66.nix ({ nativeBuildRoot = buildPackages.icu66.override { buildRootOnly = true; }; - } // (lib.optionalAttrs (stdenv.hostPlatform.isi686 && stdenv.cc.isGNU) { - stdenv = gcc6Stdenv; # with gcc-7: undefined reference to `__divmoddi4' - })); + }); icu67 = callPackage ../development/libraries/icu/67.nix ({ nativeBuildRoot = buildPackages.icu67.override { buildRootOnly = true; }; - } // (lib.optionalAttrs (stdenv.hostPlatform.isi686 && stdenv.cc.isGNU) { - stdenv = gcc6Stdenv; # with gcc-7: undefined reference to `__divmoddi4' - })); + }); icu68 = callPackage ../development/libraries/icu/68.nix ({ nativeBuildRoot = buildPackages.icu68.override { buildRootOnly = true; }; - } // (lib.optionalAttrs (stdenv.hostPlatform.isi686 && stdenv.cc.isGNU) { - stdenv = gcc6Stdenv; # with gcc-7: undefined reference to `__divmoddi4' - })); + }); icu69 = callPackage ../development/libraries/icu/69.nix ({ nativeBuildRoot = buildPackages.icu69.override { buildRootOnly = true; }; - } // (lib.optionalAttrs (stdenv.hostPlatform.isi686 && stdenv.cc.isGNU) { - stdenv = gcc6Stdenv; # with gcc-7: undefined reference to `__divmoddi4' - })); + }); icu70 = callPackage ../development/libraries/icu/70.nix ({ nativeBuildRoot = buildPackages.icu70.override { buildRootOnly = true; }; - } // (lib.optionalAttrs (stdenv.hostPlatform.isi686 && stdenv.cc.isGNU) { - stdenv = gcc6Stdenv; # with gcc-7: undefined reference to `__divmoddi4' - })); + }); icu71 = callPackage ../development/libraries/icu/71.nix ({ nativeBuildRoot = buildPackages.icu71.override { buildRootOnly = true; }; - } // (lib.optionalAttrs (stdenv.hostPlatform.isi686 && stdenv.cc.isGNU) { - stdenv = gcc6Stdenv; # with gcc-7: undefined reference to `__divmoddi4' - })); + }); icu = icu71; @@ -18021,6 +18010,7 @@ with pkgs; }; itk4 = callPackage ../development/libraries/itk/4.x.nix { + stdenv = if stdenv.cc.isGNU && stdenv.system == "x86_64-linux" then gcc10Stdenv else stdenv; inherit (darwin.apple_sdk.frameworks) Cocoa; }; @@ -19032,8 +19022,6 @@ with pkgs; libnftnl = callPackage ../development/libraries/libnftnl { }; - libnih = callPackage ../development/libraries/libnih { }; - libnova = callPackage ../development/libraries/science/astronomy/libnova { }; libnxml = callPackage ../development/libraries/libnxml { }; @@ -20054,6 +20042,8 @@ with pkgs; pdal = callPackage ../development/libraries/pdal { } ; + pdal_2_3 = callPackage ../development/libraries/pdal/2_3.nix { } ; + pdf2xml = callPackage ../development/libraries/pdf2xml {} ; pe-parse = callPackage ../development/libraries/pe-parse { }; @@ -20118,9 +20108,9 @@ with pkgs; prime-server = callPackage ../development/libraries/prime-server { }; - primecount = callPackage ../development/libraries/science/math/primecount { }; + primecount = callPackage ../applications/science/math/primecount { }; - primesieve = callPackage ../development/libraries/science/math/primesieve { }; + primesieve = callPackage ../applications/science/math/primesieve { }; prison = callPackage ../development/libraries/prison { }; @@ -20334,6 +20324,8 @@ with pkgs; rinutils = callPackage ../development/libraries/rinutils { }; + rtrlib = callPackage ../development/libraries/rtrlib { }; + kissfft = callPackage ../development/libraries/kissfft { }; lambdabot = callPackage ../development/tools/haskell/lambdabot { @@ -21494,7 +21486,6 @@ with pkgs; withRecommendedPackages = false; inherit (darwin.apple_sdk.frameworks) Cocoa Foundation; inherit (darwin) libobjc; - jdk = jdk8; # TODO: remove override https://github.com/NixOS/nixpkgs/pull/89731 }; rWrapper = callPackage ../development/r-modules/wrapper.nix { @@ -21629,6 +21620,8 @@ with pkgs; bird = callPackage ../servers/bird { }; + bloat = callPackage ../servers/bloat { }; + bosun = callPackage ../servers/monitoring/bosun { }; cayley = callPackage ../servers/cayley { }; @@ -21907,12 +21900,12 @@ with pkgs; mackerel-agent = callPackage ../servers/monitoring/mackerel-agent { }; - mailman = callPackage ../servers/mail/mailman/wrapped.nix { }; + mailmanPackages = callPackage ../servers/mail/mailman { }; + inherit (mailmanPackages) mailman mailman-hyperkitty; + mailman-web = mailmanPackages.web; mailman-rss = callPackage ../tools/misc/mailman-rss { }; - mailman-web = with python3.pkgs; toPythonApplication mailman-web; - listadmin = callPackage ../applications/networking/listadmin {}; maker-panel = callPackage ../tools/misc/maker-panel { }; @@ -22497,6 +22490,8 @@ with pkgs; redis = callPackage ../servers/nosql/redis { }; + redli = callPackage ../tools/networking/redli { }; + redstore = callPackage ../servers/http/redstore { }; reproxy = callPackage ../servers/reproxy { }; @@ -22700,7 +22695,9 @@ with pkgs; webmetro = callPackage ../servers/webmetro { }; - wishlist = callPackage ../servers/wishlist { }; + wishlist = callPackage ../servers/wishlist { + buildGoModule = buildGo118Module; + }; wsdd = callPackage ../servers/wsdd { }; @@ -23265,6 +23262,8 @@ with pkgs; linux_5_10_hardened = linuxKernel.kernels.linux_5_10_hardened; linuxPackages_5_15_hardened = linuxKernel.packages.linux_5_15_hardened; linux_5_15_hardened = linuxKernel.kernels.linux_5_15_hardened; + linuxPackages_5_17_hardened = linuxKernel.packages.linux_5_17_hardened; + linux_5_17_hardened = linuxKernel.kernels.linux_5_17_hardened; # Hardkernel (Odroid) kernels. linuxPackages_hardkernel_latest = linuxKernel.packageAliases.linux_hardkernel_latest; @@ -23443,6 +23442,8 @@ with pkgs; system76-firmware = callPackage ../os-specific/linux/firmware/system76-firmware { }; + system76-keyboard-configurator = callPackage ../applications/misc/system76-keyboard-configurator { }; + ocf-resource-agents = callPackage ../os-specific/linux/ocf-resource-agents { }; open-vm-tools = callPackage ../applications/virtualization/open-vm-tools { }; @@ -23693,6 +23694,8 @@ with pkgs; rtkit = callPackage ../os-specific/linux/rtkit { }; + rt-tests = callPackage ../os-specific/linux/rt-tests { }; + rt5677-firmware = callPackage ../os-specific/linux/firmware/rt5677 { }; rtl8192su-firmware = callPackage ../os-specific/linux/firmware/rtl8192su-firmware { }; @@ -25464,8 +25467,6 @@ with pkgs; btops = callPackage ../applications/window-managers/btops { }; - buho = libsForQt5.callPackage ../applications/office/buho { }; - bvi = callPackage ../applications/editors/bvi { }; bviplus = callPackage ../applications/editors/bviplus { }; @@ -25596,8 +25597,6 @@ with pkgs; clightd = callPackage ../applications/misc/clight/clightd.nix { }; - clip = libsForQt5.callPackage ../applications/video/clip { }; - clipgrab = libsForQt5.callPackage ../applications/video/clipgrab { }; clipcat = callPackage ../applications/misc/clipcat { }; @@ -25632,8 +25631,6 @@ with pkgs; communi = libsForQt5.callPackage ../applications/networking/irc/communi { }; - communicator = libsForQt5.callPackage ../tools/misc/communicator { }; - complete-alias = callPackage ../tools/misc/complete-alias { }; confclerk = callPackage ../applications/misc/confclerk { }; @@ -25852,6 +25849,7 @@ with pkgs; drawing = callPackage ../applications/graphics/drawing { }; drawio = callPackage ../applications/graphics/drawio {}; + drawio-headless = callPackage ../applications/graphics/drawio/headless.nix { }; drawpile = libsForQt5.callPackage ../applications/graphics/drawpile { }; drawpile-server-headless = libsForQt5.callPackage ../applications/graphics/drawpile { @@ -27107,8 +27105,6 @@ with pkgs; pmbootstrap = python3Packages.callPackage ../tools/misc/pmbootstrap { }; - shelf = libsForQt5.callPackage ../applications/office/shelf { }; - shepherd = nodePackages."@nerdwallet/shepherd"; skate = callPackage ../applications/misc/skate { }; @@ -27375,8 +27371,6 @@ with pkgs; imgp = python3Packages.callPackage ../applications/graphics/imgp { }; - index-fm = libsForQt5.callPackage ../applications/misc/index-fm { }; - inkcut = libsForQt5.callPackage ../applications/misc/inkcut { }; inkscape = callPackage ../applications/graphics/inkscape { @@ -28246,8 +28240,6 @@ with pkgs; ncmpcpp = callPackage ../applications/audio/ncmpcpp { }; - maui-nota = libsForQt5.callPackage ../applications/editors/maui-nota { }; - pragha = libsForQt5.callPackage ../applications/audio/pragha { }; rofi-mpd = callPackage ../applications/audio/rofi-mpd { }; @@ -29916,7 +29908,13 @@ with pkgs; tempo = callPackage ../servers/tracing/tempo {}; - temporal = callPackage ../applications/networking/cluster/temporal { }; + temporal = callPackage ../applications/networking/cluster/temporal { + buildGoModule = buildGo118Module; + }; + + temporal-cli = callPackage ../applications/networking/cluster/temporal-cli { + buildGoModule = buildGo118Module; + }; tenacity = callPackage ../applications/audio/tenacity { wxGTK = wxGTK31-gtk3; }; @@ -29986,6 +29984,8 @@ with pkgs; tig = callPackage ../applications/version-management/git-and-tools/tig { }; + tilemaker = callPackage ../applications/misc/tilemaker { }; + timbreid = callPackage ../applications/audio/pd-plugins/timbreid { fftw = fftwSinglePrec; }; @@ -30163,6 +30163,8 @@ with pkgs; channel = "ungoogled-chromium"; }); + uni = callPackage ../applications/misc/uni { }; + unigine-valley = callPackage ../applications/graphics/unigine-valley { }; unigine-heaven = callPackage ../applications/graphics/unigine-heaven { }; @@ -30440,8 +30442,6 @@ with pkgs; jdk = jdk8; # TODO: remove override https://github.com/NixOS/nixpkgs/pull/89731 }; - vvave = libsForQt5.callPackage ../applications/video/vvave { }; - vwm = callPackage ../applications/window-managers/vwm { }; yeahwm = callPackage ../applications/window-managers/yeahwm { }; @@ -30959,6 +30959,8 @@ with pkgs; zeronet = callPackage ../applications/networking/p2p/zeronet { }; + zeronet-conservancy = callPackage ../applications/networking/p2p/zeronet-conservancy { }; + zexy = callPackage ../applications/audio/pd-plugins/zexy { autoconf = buildPackages.autoconf269; }; @@ -32679,6 +32681,7 @@ with pkgs; angsd = callPackage ../applications/science/biology/angsd { }; ants = callPackage ../applications/science/biology/ants { + stdenv = if stdenv.cc.isGNU && stdenv.system == "x86_64-linux" then gcc10Stdenv else stdenv; inherit (darwin.apple_sdk.frameworks) Cocoa; }; @@ -33157,6 +33160,8 @@ with pkgs; lhapdf = lhapdf.override { stdenv = gccStdenv; }; }; + nnpdf = callPackage ../applications/science/physics/nnpdf { }; + professor = callPackage ../applications/science/physics/professor { }; sacrifice = callPackage ../applications/science/physics/sacrifice {}; @@ -33165,6 +33170,8 @@ with pkgs; shtns = callPackage ../applications/science/physics/shtns { }; + validphys2 = with python3Packages; toPythonApplication validphys2; + xfitter = callPackage ../applications/science/physics/xfitter {}; xflr5 = libsForQt5.callPackage ../applications/science/physics/xflr5 { }; @@ -33397,6 +33404,8 @@ with pkgs; }; z3-tptp = callPackage ../applications/science/logic/z3/tptp.nix {}; + zchaff = callPackage ../applications/science/logic/zchaff { }; + tlaplus = callPackage ../applications/science/logic/tlaplus { jre = jre8; # TODO: remove override https://github.com/NixOS/nixpkgs/pull/89731 }; @@ -33792,6 +33801,8 @@ with pkgs; calaos_installer = libsForQt5.callPackage ../misc/calaos/installer {}; + civo = callPackage ../applications/networking/cluster/civo { }; + click = callPackage ../applications/networking/cluster/click { }; clinfo = callPackage ../tools/system/clinfo { @@ -34436,7 +34447,7 @@ with pkgs; pt = callPackage ../applications/misc/pt { }; - protocol = python3Packages.callPackage ../applications/networking/protocol { }; + protocol = callPackage ../applications/networking/protocol { }; pykms = callPackage ../tools/networking/pykms { }; @@ -34688,7 +34699,9 @@ with pkgs; tgswitch = callPackage ../applications/networking/cluster/tgswitch {}; - tilt = callPackage ../applications/networking/cluster/tilt { }; + tilt = callPackage ../applications/networking/cluster/tilt { + buildGoModule = buildGo118Module; + }; timeular = callPackage ../applications/office/timeular {}; @@ -34914,6 +34927,8 @@ with pkgs; xboxdrv = callPackage ../misc/drivers/xboxdrv { }; + xivlauncher = callPackage ../games/xivlauncher { }; + xortool = python3Packages.callPackage ../tools/security/xortool { }; xorex = callPackage ../tools/security/xorex { }; diff --git a/pkgs/top-level/beam-packages.nix b/pkgs/top-level/beam-packages.nix index 828545ff7fa..e7f4b6b5250 100644 --- a/pkgs/top-level/beam-packages.nix +++ b/pkgs/top-level/beam-packages.nix @@ -20,6 +20,20 @@ with beam; { # Standard Erlang versions, using the generic builder. + # R25 + erlangR25 = lib.callErlang ../development/interpreters/erlang/R25.nix { + wxGTK = wxGTK30; + parallelBuild = true; + autoconf = buildPackages.autoconf269; + inherit wxSupport systemdSupport; + }; + erlangR25_odbc = erlangR25.override { odbcSupport = true; }; + erlangR25_javac = erlangR25.override { javacSupport = true; }; + erlangR25_odbc_javac = erlangR25.override { + javacSupport = true; + odbcSupport = true; + }; + # R24 erlangR24 = lib.callErlang ../development/interpreters/erlang/R24.nix { wxGTK = wxGTK30; @@ -106,6 +120,7 @@ with beam; { # Packages built with default Erlang version. erlang = packages.${defaultVersion}; + erlangR25 = packagesWith interpreters.erlangR25; erlangR24 = packagesWith interpreters.erlangR24; erlangR23 = packagesWith interpreters.erlangR23; erlangR22 = packagesWith interpreters.erlangR22; diff --git a/pkgs/top-level/config.nix b/pkgs/top-level/config.nix index 8c15e63e5fb..853e6c76ab5 100644 --- a/pkgs/top-level/config.nix +++ b/pkgs/top-level/config.nix @@ -20,6 +20,11 @@ let /* Internal stuff */ + # Hide built-in module system options from docs. + _module.args = mkOption { + internal = true; + }; + warnings = mkOption { type = types.listOf types.str; default = []; diff --git a/pkgs/top-level/linux-kernels.nix b/pkgs/top-level/linux-kernels.nix index 7c892035e7f..8196811a7b2 100644 --- a/pkgs/top-level/linux-kernels.nix +++ b/pkgs/top-level/linux-kernels.nix @@ -236,6 +236,7 @@ in { linux_5_4_hardened = hardenedKernelFor kernels.linux_5_4 { }; linux_5_10_hardened = hardenedKernelFor kernels.linux_5_10 { }; linux_5_15_hardened = hardenedKernelFor kernels.linux_5_15 { }; + linux_5_17_hardened = hardenedKernelFor kernels.linux_5_17 { }; })); /* Linux kernel modules are inherently tied to a specific kernel. So diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix index 3c97d570a90..a28ae22c136 100644 --- a/pkgs/top-level/perl-packages.nix +++ b/pkgs/top-level/perl-packages.nix @@ -15188,10 +15188,10 @@ let TestPostgreSQL = buildPerlModule { pname = "Test-PostgreSQL"; - version = "1.27"; + version = "1.29"; src = fetchurl { - url = "mirror://cpan/authors/id/T/TJ/TJC/Test-PostgreSQL-1.27.tar.gz"; - sha256 = "b1bd231693100cc40905fb0ba3173173201621de9c8301f21c5b593b0a46f907"; + url = "mirror://cpan/authors/id/T/TJ/TJC/Test-PostgreSQL-1.29.tar.gz"; + sha256 = "sha256-GKz35YnKTMqc3kdgm1NsnYI8hWLRqlIQwWjl6xuOT54="; }; buildInputs = [ ModuleBuildTiny TestSharedFork pkgs.postgresql ]; propagatedBuildInputs = [ DBDPg DBI FileWhich FunctionParameters Moo TieHashMethod TryTiny TypeTiny ]; @@ -19533,7 +19533,7 @@ let url = "mirror://cpan/authors/id/Y/YV/YVES/Sereal-4.018.tar.gz"; sha256 = "0pqygrl88jp2w73jd9cw4k22fhvh5vcwqbiwl9wpxm67ql95cwwa"; }; - buildInputs = [ TestDeep TestLongString TestMemoryGrowth TestWarn ]; + buildInputs = [ TestDeep TestLongString TestWarn ]; propagatedBuildInputs = [ SerealDecoder SerealEncoder ]; meta = { homepage = "https://github.com/Sereal/Sereal"; diff --git a/pkgs/top-level/python-aliases.nix b/pkgs/top-level/python-aliases.nix index d76d079eab2..5e421b9c336 100644 --- a/pkgs/top-level/python-aliases.nix +++ b/pkgs/top-level/python-aliases.nix @@ -38,6 +38,7 @@ mapAliases ({ anyjson = throw "anyjson has been removed, it was using setuptools 2to3 translation feature, which has been removed in setuptools 58"; # added 2022-01-18 argon2_cffi = argon2-cffi; # added 2022-05-09 asyncio-nats-client = nats-py; # added 2022-02-08 + Babel = babel; # added 2022-05-06 bitcoin-price-api = throw "bitcoin-price-api has been removed, it was using setuptools 2to3 translation feautre, which has been removed in setuptools 58"; # added 2022-02-15 blockdiagcontrib-cisco = throw "blockdiagcontrib-cisco is not compatible with blockdiag 2.0.0 and has been removed."; # added 2020-11-29 bt_proximity = bt-proximity; # added 2021-07-02 @@ -76,6 +77,7 @@ mapAliases ({ HAP-python = hap-python; # added 2021-06-01 hbmqtt = throw "hbmqtt was removed because it is no longer maintained"; # added 2021-11-07 hdlparse = throw "hdlparse has been removed, it was using setuptools 2to3 translation feature, which has been removed in setuptools 58"; # added 2022-01-18 + hyperkitty = throw "Please use pkgs.mailmanPackages.hyperkitty"; # added 2022-04-29 IMAPClient = imapclient; # added 2021-10-28 jupyter_client = jupyter-client; # added 2021-10-15 Keras = keras; # added 2021-11-25 @@ -84,12 +86,16 @@ mapAliases ({ Markups = markups; # added 2022-02-14 MechanicalSoup = mechanicalsoup; # added 2021-06-01 memcached = python-memcached; # added 2022-05-06 + mailman = throw "Please use pkgs.mailman"; # added 2022-04-29 + mailman-hyperkitty = throw "Please use pkgs.mailmanPackages.mailman-hyperkitty"; # added 2022-04-29 + mailman-web = throw "Please use pkgs.mailman-web"; # added 2022-04-29 net2grid = gridnet; # add 2022-04-22 nose-cover3 = throw "nose-cover3 has been removed, it was using setuptools 2to3 translation feature, which has been removed in setuptools 58"; # added 2022-02-16 pam = python-pam; # added 2020-09-07. PasteDeploy = pastedeploy; # added 2021-10-07 pathpy = path; # added 2022-04-12 pep257 = pydocstyle; # added 2022-04-12 + postorius = throw "Please use pkgs.mailmanPackages.postorius"; # added 2022-04-29 powerlineMemSegment = powerline-mem-segment; # added 2021-10-08 privacyidea = throw "privacyidea has been renamed to pkgs.privacyidea"; # added 2021-06-20 prometheus_client = prometheus-client; # added 2021-06-10 @@ -132,6 +138,7 @@ mapAliases ({ scikitlearn = scikit-learn; # added 2021-07-21 selectors34 = throw "selectors34 has been removed: functionality provided by Python itself; archived by upstream."; # added 2021-06-10 setuptools_scm = setuptools-scm; # added 2021-06-03 + sharkiqpy = sharkiq; # added 2022-05-21 smart_open = smart-open; # added 2021-03-14 smmap2 = throw "smmap2 has been deprecated, use smmap instead."; # added 2020-03-14 SPARQLWrapper = sparqlwrapper; diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 7fad7ce562e..e3c83361afc 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -195,8 +195,6 @@ in { addict = callPackage ../development/python-modules/addict { }; - addic7ed-cli = callPackage ../development/python-modules/addic7ed-cli { }; - adext = callPackage ../development/python-modules/adext { }; adguardhome = callPackage ../development/python-modules/adguardhome { }; @@ -769,6 +767,8 @@ in { aubio = callPackage ../development/python-modules/aubio { }; + audible = callPackage ../development/python-modules/audible { }; + audio-metadata = callPackage ../development/python-modules/audio-metadata { }; audioread = callPackage ../development/python-modules/audioread { }; @@ -1099,7 +1099,7 @@ in { b2sdk = callPackage ../development/python-modules/b2sdk { }; - Babel = callPackage ../development/python-modules/Babel { }; + babel = callPackage ../development/python-modules/babel { }; babelfish = callPackage ../development/python-modules/babelfish { }; @@ -1407,6 +1407,8 @@ in { btrfs = callPackage ../development/python-modules/btrfs { }; + btrfsutil = toPythonModule (pkgs.btrfs-progs.override { python3 = self.python; }); + bugsnag = callPackage ../development/python-modules/bugsnag { }; bugwarrior = callPackage ../development/python-modules/bugwarrior { }; @@ -2243,6 +2245,8 @@ in { directv = callPackage ../development/python-modules/directv { }; + dirty-equals = callPackage ../development/python-modules/dirty-equals { }; + discid = callPackage ../development/python-modules/discid { }; discogs-client = callPackage ../development/python-modules/discogs-client { }; @@ -2380,6 +2384,8 @@ in { djangorestframework = callPackage ../development/python-modules/djangorestframework { }; + djangorestframework-dataclasses = callPackage ../development/python-modules/djangorestframework-dataclasses { }; + djangorestframework-simplejwt = callPackage ../development/python-modules/djangorestframework-simplejwt { }; django_reversion = callPackage ../development/python-modules/django_reversion { }; @@ -2524,6 +2530,8 @@ in { dragonfly = callPackage ../development/python-modules/dragonfly { }; + dremel3dpy = callPackage ../development/python-modules/dremel3dpy { }; + drf-jwt = callPackage ../development/python-modules/drf-jwt { }; drf-nested-routers = callPackage ../development/python-modules/drf-nested-routers { }; @@ -2568,6 +2576,8 @@ in { dungeon-eos = callPackage ../development/python-modules/dungeon-eos { }; + duo-client = callPackage ../development/python-modules/duo-client { }; + durus = callPackage ../development/python-modules/durus { }; dwdwfsapi = callPackage ../development/python-modules/dwdwfsapi { }; @@ -3234,6 +3244,8 @@ in { ftputil = callPackage ../development/python-modules/ftputil { }; + func-timeout = callPackage ../development/python-modules/func-timeout { }; + funcparserlib = callPackage ../development/python-modules/funcparserlib { }; funcsigs = callPackage ../development/python-modules/funcsigs { }; @@ -3626,6 +3638,8 @@ in { gpy = callPackage ../development/python-modules/gpy { }; + gpt-2-simple = callPackage ../development/python-modules/gpt-2-simple { }; + gpyopt = callPackage ../development/python-modules/gpyopt { }; gql = callPackage ../development/python-modules/gql { }; @@ -4013,8 +4027,6 @@ in { hyperion-py = callPackage ../development/python-modules/hyperion-py { }; - hyperkitty = callPackage ../servers/mail/mailman/hyperkitty.nix { }; - hyperlink = callPackage ../development/python-modules/hyperlink { }; hyperopt = callPackage ../development/python-modules/hyperopt { }; @@ -4974,6 +4986,8 @@ in { logfury = callPackage ../development/python-modules/logfury { }; + logi-circle = callPackage ../development/python-modules/logi-circle { }; + logical-unification = callPackage ../development/python-modules/logical-unification { }; logilab_astng = callPackage ../development/python-modules/logilab_astng { }; @@ -4996,6 +5010,8 @@ in { losant-rest = callPackage ../development/python-modules/losant-rest { }; + lrcalc-python = callPackage ../development/python-modules/lrcalc-python { }; + lru-dict = callPackage ../development/python-modules/lru-dict { }; lsassy = callPackage ../development/python-modules/lsassy { }; @@ -5062,14 +5078,8 @@ in { mailchimp = callPackage ../development/python-modules/mailchimp { }; - mailman = callPackage ../servers/mail/mailman { }; - mailmanclient = callPackage ../development/python-modules/mailmanclient { }; - mailman-hyperkitty = callPackage ../development/python-modules/mailman-hyperkitty { }; - - mailman-web = callPackage ../servers/mail/mailman/web.nix { }; - rtmixer = callPackage ../development/python-modules/rtmixer { }; mail-parser = callPackage ../development/python-modules/mail-parser { }; @@ -5717,6 +5727,10 @@ in { nltk = callPackage ../development/python-modules/nltk { }; + nnpdf = toPythonModule (pkgs.nnpdf.override { + python3 = python; + }); + nmapthon2 = callPackage ../development/python-modules/nmapthon2 { }; amaranth-boards = callPackage ../development/python-modules/amaranth-boards { }; @@ -5841,6 +5855,8 @@ in { python-nvd3 = callPackage ../development/python-modules/python-nvd3 { }; + py-deprecate = callPackage ../development/python-modules/py-deprecate { }; + nwdiag = callPackage ../development/python-modules/nwdiag { }; oasatelematics = callPackage ../development/python-modules/oasatelematics { }; @@ -6375,6 +6391,8 @@ in { pipenv-poetry-migrate = callPackage ../development/python-modules/pipenv-poetry-migrate { }; + pip-api = callPackage ../development/python-modules/pip-api { }; + pip-tools = callPackage ../development/python-modules/pip-tools { }; pip-requirements-parser = callPackage ../development/python-modules/pip-requirements-parser { }; @@ -6643,8 +6661,6 @@ in { poster3 = callPackage ../development/python-modules/poster3 { }; - postorius = callPackage ../servers/mail/mailman/postorius.nix { }; - pot = callPackage ../development/python-modules/pot { }; potentials = callPackage ../development/python-modules/potentials { }; @@ -7218,6 +7234,10 @@ in { pyfxa = callPackage ../development/python-modules/pyfxa { }; + pyfzf = callPackage ../development/python-modules/pyfzf { + inherit (pkgs) fzf; + }; + pygal = callPackage ../development/python-modules/pygal { }; pygame = callPackage ../development/python-modules/pygame { @@ -7254,7 +7274,7 @@ in { pygments-better-html = callPackage ../development/python-modules/pygments-better-html { }; - pygments = callPackage ../development/python-modules/Pygments { }; + pygments = callPackage ../development/python-modules/pygments { }; pygments-markdown-lexer = callPackage ../development/python-modules/pygments-markdown-lexer { }; @@ -8976,6 +8996,8 @@ in { repocheck = callPackage ../development/python-modules/repocheck { }; + reportengine = callPackage ../development/python-modules/reportengine { }; + reportlab = callPackage ../development/python-modules/reportlab { }; repoze_lru = callPackage ../development/python-modules/repoze_lru { }; @@ -9447,7 +9469,7 @@ in { sharedmem = callPackage ../development/python-modules/sharedmem { }; - sharkiqpy = callPackage ../development/python-modules/sharkiqpy { }; + sharkiq = callPackage ../development/python-modules/sharkiq { }; sh = callPackage ../development/python-modules/sh { }; @@ -9923,6 +9945,8 @@ in { stdlib-list = callPackage ../development/python-modules/stdlib-list { }; + steamodd = callPackage ../development/python-modules/steamodd { }; + stem = callPackage ../development/python-modules/stem { }; stestr = callPackage ../development/python-modules/stestr { }; @@ -10185,6 +10209,8 @@ in { tern = callPackage ../development/python-modules/tern { }; + tesla-powerwall = callPackage ../development/python-modules/tesla-powerwall { }; + tesla-wall-connector = callPackage ../development/python-modules/tesla-wall-connector { }; teslajsonpy = callPackage ../development/python-modules/teslajsonpy { }; @@ -10360,6 +10386,8 @@ in { torchgpipe = callPackage ../development/python-modules/torchgpipe { }; + torchmetrics = callPackage ../development/python-modules/torchmetrics { }; + torchinfo = callPackage ../development/python-modules/torchinfo { }; torchvision = callPackage ../development/python-modules/torchvision { }; @@ -10544,6 +10572,8 @@ in { types-decorator = callPackage ../development/python-modules/types-decorator { }; + types-docutils = callPackage ../development/python-modules/types-docutils { }; + types-enum34 = callPackage ../development/python-modules/types-enum34 { }; types-freezegun = callPackage ../development/python-modules/types-freezegun { }; @@ -10762,6 +10792,10 @@ in { validobj = callPackage ../development/python-modules/validobj { }; + validphys2 = callPackage ../development/python-modules/validphys2 { }; + + vallox-websocket-api = callPackage ../development/python-modules/vallox-websocket-api { }; + variants = callPackage ../development/python-modules/variants { }; varint = callPackage ../development/python-modules/varint { }; @@ -10914,6 +10948,8 @@ in { inherit (pkgs.darwin.apple_sdk.frameworks) CoreServices; }; + watchfiles = callPackage ../development/python-modules/watchfiles { }; + watchgod = callPackage ../development/python-modules/watchgod { }; waterfurnace = callPackage ../development/python-modules/waterfurnace { }; @@ -10928,6 +10964,8 @@ in { wazeroutecalculator = callPackage ../development/python-modules/wazeroutecalculator { }; + wcag-contrast-ratio = callPackage ../development/python-modules/wcag-contrast-ratio { }; + wcmatch = callPackage ../development/python-modules/wcmatch { }; wcwidth = callPackage ../development/python-modules/wcwidth { }; @@ -11290,9 +11328,9 @@ in { zdaemon = callPackage ../development/python-modules/zdaemon { }; - zeek = toPythonModule (pkgs.zeek.override { + zeek = (toPythonModule (pkgs.zeek.override { python3 = python; - }).py; + })).py; zeep = callPackage ../development/python-modules/zeep { }; diff --git a/pkgs/top-level/qt5-packages.nix b/pkgs/top-level/qt5-packages.nix index 8551c5f9bff..770cf901120 100644 --- a/pkgs/top-level/qt5-packages.nix +++ b/pkgs/top-level/qt5-packages.nix @@ -51,9 +51,17 @@ let }; in (lib.makeOverridable mkPlamoGear attrs); -in (kdeFrameworks // plasmaMobileGear // plasma5 // plasma5.thirdParty // kdeGear // qt5 // { + mauiPackages = let + mkMaui = import ../applications/maui; + attrs = { + inherit libsForQt5; + inherit (pkgs) lib fetchurl; + }; + in (lib.makeOverridable mkMaui attrs); + +in (kdeFrameworks // plasmaMobileGear // plasma5 // plasma5.thirdParty // kdeGear // mauiPackages // qt5 // { - inherit kdeFrameworks plasmaMobileGear plasma5 kdeGear qt5; + inherit kdeFrameworks plasmaMobileGear plasma5 kdeGear mauiPackages qt5; # Alias for backwards compatibility. Added 2021-05-07. kdeApplications = kdeGear; @@ -144,14 +152,6 @@ in (kdeFrameworks // plasmaMobileGear // plasma5 // plasma5.thirdParty // kdeGea maplibre-gl-native = callPackage ../development/libraries/maplibre-gl-native { }; - mauikit = callPackage ../development/libraries/mauikit { }; - - mauikit-accounts = callPackage ../development/libraries/mauikit-accounts { }; - - mauikit-filebrowsing = callPackage ../development/libraries/mauikit-filebrowsing { }; - - mauikit-texteditor = callPackage ../development/libraries/mauikit-texteditor { }; - mlt = callPackage ../development/libraries/mlt/qt-5.nix { }; phonon = callPackage ../development/libraries/phonon { }; @@ -203,6 +203,8 @@ in (kdeFrameworks // plasmaMobileGear // plasma5 // plasma5.thirdParty // kdeGea inherit (pkgs.darwin.apple_sdk.frameworks) CoreFoundation Security; }; + qtmpris = callPackage ../development/libraries/qtmpris { }; + qtpbfimageplugin = callPackage ../development/libraries/qtpbfimageplugin { }; qtstyleplugins = callPackage ../development/libraries/qtstyleplugins { }; diff --git a/pkgs/top-level/release-cross.nix b/pkgs/top-level/release-cross.nix index 205558d666a..13a49179bcb 100644 --- a/pkgs/top-level/release-cross.nix +++ b/pkgs/top-level/release-cross.nix @@ -195,8 +195,8 @@ in powerpcle-embedded = mapTestOnCross lib.systems.examples.ppcle-embedded embedded; i686-embedded = mapTestOnCross lib.systems.examples.i686-embedded embedded; x86_64-embedded = mapTestOnCross lib.systems.examples.x86_64-embedded embedded; - riscv64-embedded = mapTestOnCross lib.systems.examples.riscv64 embedded; - riscv32-embedded = mapTestOnCross lib.systems.examples.riscv32 embedded; + riscv64-embedded = mapTestOnCross lib.systems.examples.riscv64-embedded embedded; + riscv32-embedded = mapTestOnCross lib.systems.examples.riscv32-embedded embedded; x86_64-netbsd = mapTestOnCross lib.systems.examples.x86_64-netbsd common; diff --git a/pkgs/top-level/release-haskell.nix b/pkgs/top-level/release-haskell.nix index ade95838efc..789d83c4be0 100644 --- a/pkgs/top-level/release-haskell.nix +++ b/pkgs/top-level/release-haskell.nix @@ -144,7 +144,14 @@ let tests.haskell = packagePlatforms pkgs.tests.haskell; - nixosTests.agda = (packagePlatforms pkgs.nixosTests).agda; + nixosTests = { + inherit (packagePlatforms pkgs.nixosTests) + agda + xmonad + xmonad-xdg-autostart + ; + }; + agdaPackages = packagePlatforms pkgs.agdaPackages; # top-level packages that depend on haskellPackages diff --git a/pkgs/top-level/wine-packages.nix b/pkgs/top-level/wine-packages.nix index c8bdaeb426e..d50b979fdce 100644 --- a/pkgs/top-level/wine-packages.nix +++ b/pkgs/top-level/wine-packages.nix @@ -12,7 +12,8 @@ rec { fontconfigSupport = stdenv.isLinux; alsaSupport = stdenv.isLinux; openglSupport = true; - vulkanSupport = true; + # Works on Darwin but disabled by default to prevent Hydra build failures due to MoltenVK. + vulkanSupport = stdenv.isLinux; tlsSupport = true; cupsSupport = true; dbusSupport = stdenv.isLinux; @@ -40,7 +41,8 @@ rec { gphoto2Support = true; krb5Support = true; ldapSupport = true; - vkd3dSupport = true; + # Works on Darwin but disabled by default to prevent Hydra build failures due to MoltenVK. + vkd3dSupport = stdenv.isLinux; embedInstallers = true; }; |