diff options
850 files changed, 14953 insertions, 8435 deletions
diff --git a/.github/labeler.yml b/.github/labeler.yml index c5c10d3e4bc..a48f60e7763 100644 --- a/.github/labeler.yml +++ b/.github/labeler.yml @@ -5,10 +5,6 @@ - pkgs/development/libraries/agda/**/* - pkgs/top-level/agda-packages.nix -"6.topic: bsd": - - pkgs/os-specific/bsd/**/* - - pkgs/stdenv/freebsd/**/* - "6.topic: cinnamon": - pkgs/desktops/cinnamon/**/* diff --git a/doc/using/overlays.chapter.md b/doc/using/overlays.chapter.md index df152bc14e7..a51aa9ee8fc 100644 --- a/doc/using/overlays.chapter.md +++ b/doc/using/overlays.chapter.md @@ -77,7 +77,7 @@ In Nixpkgs, we have multiple implementations of the BLAS/LAPACK numerical linear The Nixpkgs attribute is `openblas` for ILP64 (integer width = 64 bits) and `openblasCompat` for LP64 (integer width = 32 bits). `openblasCompat` is the default. -- [LAPACK reference](http://www.netlib.org/lapack/) (also provides BLAS) +- [LAPACK reference](http://www.netlib.org/lapack/) (also provides BLAS and CBLAS) The Nixpkgs attribute is `lapack-reference`. @@ -117,7 +117,23 @@ $ LD_LIBRARY_PATH=$(nix-build -A mkl)/lib${LD_LIBRARY_PATH:+:}$LD_LIBRARY_PATH n Intel MKL requires an `openmp` implementation when running with multiple processors. By default, `mkl` will use Intel's `iomp` implementation if no other is specified, but this is a runtime-only dependency and binary compatible with the LLVM implementation. To use that one instead, Intel recommends users set it with `LD_PRELOAD`. Note that `mkl` is only available on `x86_64-linux` and `x86_64-darwin`. Moreover, Hydra is not building and distributing pre-compiled binaries using it. -For BLAS/LAPACK switching to work correctly, all packages must depend on `blas` or `lapack`. This ensures that only one BLAS/LAPACK library is used at one time. There are two versions of BLAS/LAPACK currently in the wild, `LP64` (integer size = 32 bits) and `ILP64` (integer size = 64 bits). Some software needs special flags or patches to work with `ILP64`. You can check if `ILP64` is used in Nixpkgs with `blas.isILP64` and `lapack.isILP64`. Some software does NOT work with `ILP64`, and derivations need to specify an assertion to prevent this. You can prevent `ILP64` from being used with the following: +To override `blas` and `lapack` with its reference implementations (i.e. for development purposes), one can use the following overlay: + +```nix +self: super: + +{ + blas = super.blas.override { + blasProvider = self.lapack-reference; + }; + + lapack = super.lapack.override { + lapackProvider = self.lapack-reference; + }; +} +``` + +For BLAS/LAPACK switching to work correctly, all packages must depend on `blas` or `lapack`. This ensures that only one BLAS/LAPACK library is used at one time. There are two versions of BLAS/LAPACK currently in the wild, `LP64` (integer size = 32 bits) and `ILP64` (integer size = 64 bits). The attributes `blas` and `lapack` are `LP64` by default. Their `ILP64` version are provided through the attributes `blas-ilp64` and `lapack-ilp64`. Some software needs special flags or patches to work with `ILP64`. You can check if `ILP64` is used in Nixpkgs with `blas.isILP64` and `lapack.isILP64`. Some software does NOT work with `ILP64`, and derivations need to specify an assertion to prevent this. You can prevent `ILP64` from being used with the following: ```nix { stdenv, blas, lapack, ... }: diff --git a/lib/attrsets.nix b/lib/attrsets.nix index c0d3ede73d0..516fdd8d33f 100644 --- a/lib/attrsets.nix +++ b/lib/attrsets.nix @@ -4,8 +4,8 @@ let inherit (builtins) head tail length; inherit (lib.trivial) id; - inherit (lib.strings) concatStringsSep sanitizeDerivationName; - inherit (lib.lists) foldr foldl' concatMap concatLists elemAt all; + inherit (lib.strings) concatStringsSep concatMapStringsSep escapeNixIdentifier sanitizeDerivationName; + inherit (lib.lists) foldr foldl' concatMap concatLists elemAt all partition groupBy take foldl; in rec { @@ -78,6 +78,103 @@ rec { in attrByPath attrPath (abort errorMsg); + /* Update or set specific paths of an attribute set. + + Takes a list of updates to apply and an attribute set to apply them to, + and returns the attribute set with the updates applied. Updates are + represented as { path = ...; update = ...; } values, where `path` is a + list of strings representing the attribute path that should be updated, + and `update` is a function that takes the old value at that attribute path + as an argument and returns the new + value it should be. + + Properties: + - Updates to deeper attribute paths are applied before updates to more + shallow attribute paths + - Multiple updates to the same attribute path are applied in the order + they appear in the update list + - If any but the last `path` element leads into a value that is not an + attribute set, an error is thrown + - If there is an update for an attribute path that doesn't exist, + accessing the argument in the update function causes an error, but + intermediate attribute sets are implicitly created as needed + + Example: + updateManyAttrsByPath [ + { + path = [ "a" "b" ]; + update = old: { d = old.c; }; + } + { + path = [ "a" "b" "c" ]; + update = old: old + 1; + } + { + path = [ "x" "y" ]; + update = old: "xy"; + } + ] { a.b.c = 0; } + => { a = { b = { d = 1; }; }; x = { y = "xy"; }; } + */ + updateManyAttrsByPath = let + # When recursing into attributes, instead of updating the `path` of each + # update using `tail`, which needs to allocate an entirely new list, + # we just pass a prefix length to use and make sure to only look at the + # path without the prefix length, so that we can reuse the original list + # entries. + go = prefixLength: hasValue: value: updates: + let + # Splits updates into ones on this level (split.right) + # And ones on levels further down (split.wrong) + split = partition (el: length el.path == prefixLength) updates; + + # Groups updates on further down levels into the attributes they modify + nested = groupBy (el: elemAt el.path prefixLength) split.wrong; + + # Applies only nested modification to the input value + withNestedMods = + # Return the value directly if we don't have any nested modifications + if split.wrong == [] then + if hasValue then value + else + # Throw an error if there is no value. This `head` call here is + # safe, but only in this branch since `go` could only be called + # with `hasValue == false` for nested updates, in which case + # it's also always called with at least one update + let updatePath = (head split.right).path; in + throw + ( "updateManyAttrsByPath: Path '${showAttrPath updatePath}' does " + + "not exist in the given value, but the first update to this " + + "path tries to access the existing value.") + else + # If there are nested modifications, try to apply them to the value + if ! hasValue then + # But if we don't have a value, just use an empty attribute set + # as the value, but simplify the code a bit + mapAttrs (name: go (prefixLength + 1) false null) nested + else if isAttrs value then + # If we do have a value and it's an attribute set, override it + # with the nested modifications + value // + mapAttrs (name: go (prefixLength + 1) (value ? ${name}) value.${name}) nested + else + # However if it's not an attribute set, we can't apply the nested + # modifications, throw an error + let updatePath = (head split.wrong).path; in + throw + ( "updateManyAttrsByPath: Path '${showAttrPath updatePath}' needs to " + + "be updated, but path '${showAttrPath (take prefixLength updatePath)}' " + + "of the given value is not an attribute set, so we can't " + + "update an attribute inside of it."); + + # We get the final result by applying all the updates on this level + # after having applied all the nested updates + # We use foldl instead of foldl' so that in case of multiple updates, + # intermediate values aren't evaluated if not needed + in foldl (acc: el: el.update acc) withNestedMods split.right; + + in updates: value: go 0 true value updates; + /* Return the specified attributes from a set. Example: @@ -477,6 +574,20 @@ rec { overrideExisting = old: new: mapAttrs (name: value: new.${name} or value) old; + /* Turns a list of strings into a human-readable description of those + strings represented as an attribute path. The result of this function is + not intended to be machine-readable. + + Example: + showAttrPath [ "foo" "10" "bar" ] + => "foo.\"10\".bar" + showAttrPath [] + => "<root attribute path>" + */ + showAttrPath = path: + if path == [] then "<root attribute path>" + else concatMapStringsSep "." escapeNixIdentifier path; + /* Get a package output. If no output is found, fallback to `.out` and then to the default. diff --git a/lib/default.nix b/lib/default.nix index 3fead03a463..f8ab51c6579 100644 --- a/lib/default.nix +++ b/lib/default.nix @@ -78,9 +78,10 @@ let mapAttrs' mapAttrsToList mapAttrsRecursive mapAttrsRecursiveCond genAttrs isDerivation toDerivation optionalAttrs zipAttrsWithNames zipAttrsWith zipAttrs recursiveUpdateUntil - recursiveUpdate matchAttrs overrideExisting getOutput getBin + recursiveUpdate matchAttrs overrideExisting showAttrPath getOutput getBin getLib getDev getMan chooseDevOutputs zipWithNames zip - recurseIntoAttrs dontRecurseIntoAttrs cartesianProductOfSets; + recurseIntoAttrs dontRecurseIntoAttrs cartesianProductOfSets + updateManyAttrsByPath; inherit (self.lists) singleton forEach foldr fold foldl foldl' imap0 imap1 concatMap flatten remove findSingle findFirst any all count optional optionals toList range partition zipListsWith zipLists diff --git a/lib/lists.nix b/lib/lists.nix index 1dbff7668d7..a030280c8dc 100644 --- a/lib/lists.nix +++ b/lib/lists.nix @@ -4,6 +4,7 @@ let inherit (lib.strings) toInt; inherit (lib.trivial) compare min; + inherit (lib.attrsets) mapAttrs; in rec { @@ -340,15 +341,15 @@ rec { groupBy' builtins.add 0 (x: boolToString (x > 2)) [ 5 1 2 3 4 ] => { true = 12; false = 3; } */ - groupBy' = op: nul: pred: lst: - foldl' (r: e: - let - key = pred e; - in - r // { ${key} = op (r.${key} or nul) e; } - ) {} lst; + groupBy' = op: nul: pred: lst: mapAttrs (name: foldl op nul) (groupBy pred lst); - groupBy = groupBy' (sum: e: sum ++ [e]) []; + groupBy = builtins.groupBy or ( + pred: foldl' (r: e: + let + key = pred e; + in + r // { ${key} = (r.${key} or []) ++ [e]; } + ) {}); /* Merges two lists of the same size together. If the sizes aren't the same the merging stops at the shortest. How both lists are merged is defined diff --git a/lib/modules.nix b/lib/modules.nix index 4c4d9f994da..01ba914ca80 100644 --- a/lib/modules.nix +++ b/lib/modules.nix @@ -9,7 +9,7 @@ let catAttrs concatLists concatMap - count + concatStringsSep elem filter findFirst @@ -47,6 +47,20 @@ let showOption unknownModule ; + + showDeclPrefix = loc: decl: prefix: + " - option(s) with prefix `${showOption (loc ++ [prefix])}' in module `${decl._file}'"; + showRawDecls = loc: decls: + concatStringsSep "\n" + (sort (a: b: a < b) + (concatMap + (decl: map + (showDeclPrefix loc decl) + (attrNames decl.options) + ) + decls + )); + in rec { @@ -474,26 +488,61 @@ rec { [{ inherit (module) file; inherit value; }] ) configs; + # Convert an option tree decl to a submodule option decl + optionTreeToOption = decl: + if isOption decl.options + then decl + else decl // { + options = mkOption { + type = types.submoduleWith { + modules = [ { options = decl.options; } ]; + # `null` is not intended for use by modules. It is an internal + # value that means "whatever the user has declared elsewhere". + # This might become obsolete with https://github.com/NixOS/nixpkgs/issues/162398 + shorthandOnlyDefinesConfig = null; + }; + }; + }; + resultsByName = mapAttrs (name: decls: # We're descending into attribute ‘name’. let loc = prefix ++ [name]; defns = defnsByName.${name} or []; defns' = defnsByName'.${name} or []; - nrOptions = count (m: isOption m.options) decls; + optionDecls = filter (m: isOption m.options) decls; in - if nrOptions == length decls then + if length optionDecls == length decls then let opt = fixupOptionType loc (mergeOptionDecls loc decls); in { matchedOptions = evalOptionValue loc opt defns'; unmatchedDefns = []; } - else if nrOptions != 0 then - let - firstOption = findFirst (m: isOption m.options) "" decls; - firstNonOption = findFirst (m: !isOption m.options) "" decls; - in - throw "The option `${showOption loc}' in `${firstOption._file}' is a prefix of options in `${firstNonOption._file}'." + else if optionDecls != [] then + if all (x: x.options.type.name == "submodule") optionDecls + # Raw options can only be merged into submodules. Merging into + # attrsets might be nice, but ambiguous. Suppose we have + # attrset as a `attrsOf submodule`. User declares option + # attrset.foo.bar, this could mean: + # a. option `bar` is only available in `attrset.foo` + # b. option `foo.bar` is available in all `attrset.*` + # c. reject and require "<name>" as a reminder that it behaves like (b). + # d. magically combine (a) and (c). + # All of the above are merely syntax sugar though. + then + let opt = fixupOptionType loc (mergeOptionDecls loc (map optionTreeToOption decls)); + in { + matchedOptions = evalOptionValue loc opt defns'; + unmatchedDefns = []; + } + else + let + firstNonOption = findFirst (m: !isOption m.options) "" decls; + nonOptions = filter (m: !isOption m.options) decls; + in + throw "The option `${showOption loc}' in module `${(lib.head optionDecls)._file}' would be a parent of the following options, but its type `${(lib.head optionDecls).options.type.description or "<no description>"}' does not support nested options.\n${ + showRawDecls loc nonOptions + }" else mergeModules' loc decls defns) declsByName; @@ -753,13 +802,14 @@ rec { compare = a: b: (a.priority or 1000) < (b.priority or 1000); in sort compare defs'; - /* Hack for backward compatibility: convert options of type - optionSet to options of type submodule. FIXME: remove - eventually. */ fixupOptionType = loc: opt: let options = opt.options or (throw "Option `${showOption loc}' has type optionSet but has no option attribute, in ${showFiles opt.declarations}."); + + # Hack for backward compatibility: convert options of type + # optionSet to options of type submodule. FIXME: remove + # eventually. f = tp: if tp.name == "option set" || tp.name == "submodule" then throw "The option ${showOption loc} uses submodules without a wrapping type, in ${showFiles opt.declarations}." diff --git a/lib/options.nix b/lib/options.nix index 627aac24d2f..9efc1249e58 100644 --- a/lib/options.nix +++ b/lib/options.nix @@ -231,7 +231,7 @@ rec { then true else opt.visible or true; readOnly = opt.readOnly or false; - type = opt.type.description or null; + type = opt.type.description or "unspecified"; } // optionalAttrs (opt ? example) { example = scrubOptionValue opt.example; } // optionalAttrs (opt ? default) { default = scrubOptionValue opt.default; } diff --git a/lib/systems/default.nix b/lib/systems/default.nix index 529eeb6514b..7ddd5b8a581 100644 --- a/lib/systems/default.nix +++ b/lib/systems/default.nix @@ -105,7 +105,8 @@ rec { else if final.isAarch64 then "arm64" else if final.isx86_32 then "i386" else if final.isx86_64 then "x86_64" - else if final.isMips then "mips" + else if final.isMips32 then "mips" + else if final.isMips64 then "mips" # linux kernel does not distinguish mips32/mips64 else if final.isPower then "powerpc" else if final.isRiscV then "riscv" else if final.isS390 then "s390" diff --git a/lib/systems/doubles.nix b/lib/systems/doubles.nix index 00e57339a31..27cdaf6a723 100644 --- a/lib/systems/doubles.nix +++ b/lib/systems/doubles.nix @@ -26,7 +26,7 @@ let # Linux "aarch64-linux" "armv5tel-linux" "armv6l-linux" "armv7a-linux" - "armv7l-linux" "i686-linux" "m68k-linux" "mipsel-linux" + "armv7l-linux" "i686-linux" "m68k-linux" "mipsel-linux" "mips64el-linux" "powerpc64-linux" "powerpc64le-linux" "riscv32-linux" "riscv64-linux" "s390-linux" "s390x-linux" "x86_64-linux" @@ -87,7 +87,11 @@ in { darwin = filterDoubles predicates.isDarwin; freebsd = filterDoubles predicates.isFreeBSD; # Should be better, but MinGW is unclear. - gnu = filterDoubles (matchAttrs { kernel = parse.kernels.linux; abi = parse.abis.gnu; }) ++ filterDoubles (matchAttrs { kernel = parse.kernels.linux; abi = parse.abis.gnueabi; }) ++ filterDoubles (matchAttrs { kernel = parse.kernels.linux; abi = parse.abis.gnueabihf; }); + gnu = filterDoubles (matchAttrs { kernel = parse.kernels.linux; abi = parse.abis.gnu; }) + ++ filterDoubles (matchAttrs { kernel = parse.kernels.linux; abi = parse.abis.gnueabi; }) + ++ filterDoubles (matchAttrs { kernel = parse.kernels.linux; abi = parse.abis.gnueabihf; }) + ++ filterDoubles (matchAttrs { kernel = parse.kernels.linux; abi = parse.abis.gnuabin32; }) + ++ filterDoubles (matchAttrs { kernel = parse.kernels.linux; abi = parse.abis.gnuabi64; }); illumos = filterDoubles predicates.isSunOS; linux = filterDoubles predicates.isLinux; netbsd = filterDoubles predicates.isNetBSD; diff --git a/lib/systems/examples.nix b/lib/systems/examples.nix index 9c0c91617e8..997a7a8c273 100644 --- a/lib/systems/examples.nix +++ b/lib/systems/examples.nix @@ -93,6 +93,26 @@ rec { config = "mipsel-unknown-linux-gnu"; } // platforms.fuloong2f_n32; + # MIPS ABI table transcribed from here: https://wiki.debian.org/Multiarch/Tuples + + # can execute on 32bit chip + mips-linux-gnu = { config = "mips-linux-gnu"; } // platforms.gcc_mips32r2_o32; + mipsel-linux-gnu = { config = "mipsel-linux-gnu"; } // platforms.gcc_mips32r2_o32; + mipsisa32r6-linux-gnu = { config = "mipsisa32r6-linux-gnu"; } // platforms.gcc_mips32r6_o32; + mipsisa32r6el-linux-gnu = { config = "mipsisa32r6el-linux-gnu"; } // platforms.gcc_mips32r6_o32; + + # require 64bit chip (for more registers, 64-bit floating point, 64-bit "long long") but use 32bit pointers + mips64-linux-gnuabin32 = { config = "mips64-linux-gnuabin32"; } // platforms.gcc_mips64r2_n32; + mips64el-linux-gnuabin32 = { config = "mips64el-linux-gnuabin32"; } // platforms.gcc_mips64r2_n32; + mipsisa64r6-linux-gnuabin32 = { config = "mipsisa64r6-linux-gnuabin32"; } // platforms.gcc_mips64r6_n32; + mipsisa64r6el-linux-gnuabin32 = { config = "mipsisa64r6el-linux-gnuabin32"; } // platforms.gcc_mips64r6_n32; + + # 64bit pointers + mips64-linux-gnuabi64 = { config = "mips64-linux-gnuabi64"; } // platforms.gcc_mips64r2_64; + mips64el-linux-gnuabi64 = { config = "mips64el-linux-gnuabi64"; } // platforms.gcc_mips64r2_64; + mipsisa64r6-linux-gnuabi64 = { config = "mipsisa64r6-linux-gnuabi64"; } // platforms.gcc_mips64r6_64; + mipsisa64r6el-linux-gnuabi64 = { config = "mipsisa64r6el-linux-gnuabi64"; } // platforms.gcc_mips64r6_64; + muslpi = raspberryPi // { config = "armv6l-unknown-linux-musleabihf"; }; diff --git a/lib/systems/inspect.nix b/lib/systems/inspect.nix index 718954e0839..89cac575c67 100644 --- a/lib/systems/inspect.nix +++ b/lib/systems/inspect.nix @@ -17,6 +17,10 @@ rec { isAarch32 = { cpu = { family = "arm"; bits = 32; }; }; isAarch64 = { cpu = { family = "arm"; bits = 64; }; }; isMips = { cpu = { family = "mips"; }; }; + isMips32 = { cpu = { family = "mips"; bits = 32; }; }; + isMips64 = { cpu = { family = "mips"; bits = 64; }; }; + isMips64n32 = { cpu = { family = "mips"; bits = 64; }; abi = { abi = "n32"; }; }; + isMips64n64 = { cpu = { family = "mips"; bits = 64; }; abi = { abi = "64"; }; }; isMmix = { cpu = { family = "mmix"; }; }; isRiscV = { cpu = { family = "riscv"; }; }; isSparc = { cpu = { family = "sparc"; }; }; @@ -57,7 +61,7 @@ rec { isAndroid = [ { abi = abis.android; } { abi = abis.androideabi; } ]; isGnu = with abis; map (a: { abi = a; }) [ gnuabi64 gnu gnueabi gnueabihf ]; - isMusl = with abis; map (a: { abi = a; }) [ musl musleabi musleabihf ]; + isMusl = with abis; map (a: { abi = a; }) [ musl musleabi musleabihf muslabin32 muslabi64 ]; isUClibc = with abis; map (a: { abi = a; }) [ uclibc uclibceabi uclibceabihf ]; isEfi = map (family: { cpu.family = family; }) diff --git a/lib/systems/parse.nix b/lib/systems/parse.nix index f0e87c30e47..3ceddbb599b 100644 --- a/lib/systems/parse.nix +++ b/lib/systems/parse.nix @@ -359,6 +359,13 @@ rec { ]; }; gnuabi64 = { abi = "64"; }; + muslabi64 = { abi = "64"; }; + + # NOTE: abi=n32 requires a 64-bit MIPS chip! That is not a typo. + # It is basically the 64-bit abi with 32-bit pointers. Details: + # https://www.linux-mips.org/pub/linux/mips/doc/ABI/MIPS-N32-ABI-Handbook.pdf + gnuabin32 = { abi = "n32"; }; + muslabin32 = { abi = "n32"; }; musleabi = { float = "soft"; }; musleabihf = { float = "hard"; }; diff --git a/lib/systems/platforms.nix b/lib/systems/platforms.nix index b2a8dbedef4..04d55416242 100644 --- a/lib/systems/platforms.nix +++ b/lib/systems/platforms.nix @@ -1,3 +1,10 @@ +# Note: lib/systems/default.nix takes care of producing valid, +# fully-formed "platform" values (e.g. hostPlatform, buildPlatform, +# targetPlatform, etc) containing at least the minimal set of attrs +# required (see types.parsedPlatform in lib/systems/parse.nix). This +# file takes an already-valid platform and further elaborates it with +# optional fields such as linux-kernel, gcc, etc. + { lib }: rec { pc = { @@ -482,6 +489,43 @@ rec { }; }; + # can execute on 32bit chip + gcc_mips32r2_o32 = { gcc = { arch = "mips32r2"; abi = "o32"; }; }; + gcc_mips32r6_o32 = { gcc = { arch = "mips32r6"; abi = "o32"; }; }; + gcc_mips64r2_n32 = { gcc = { arch = "mips64r2"; abi = "n32"; }; }; + gcc_mips64r6_n32 = { gcc = { arch = "mips64r6"; abi = "n32"; }; }; + gcc_mips64r2_64 = { gcc = { arch = "mips64r2"; abi = "64"; }; }; + gcc_mips64r6_64 = { gcc = { arch = "mips64r6"; abi = "64"; }; }; + + # based on: + # https://www.mail-archive.com/qemu-discuss@nongnu.org/msg05179.html + # https://gmplib.org/~tege/qemu.html#mips64-debian + mips64el-qemu-linux-gnuabi64 = (import ./examples).mips64el-linux-gnuabi64 // { + linux-kernel = { + name = "mips64el"; + baseConfig = "64r2el_defconfig"; + target = "vmlinuz"; + autoModules = false; + DTB = true; + # for qemu 9p passthrough filesystem + extraConfig = '' + MIPS_MALTA y + PAGE_SIZE_4KB y + CPU_LITTLE_ENDIAN y + CPU_MIPS64_R2 y + 64BIT y + CPU_MIPS64_R2 y + + NET_9P y + NET_9P_VIRTIO y + 9P_FS y + 9P_FS_POSIX_ACL y + PCI y + VIRTIO_PCI y + ''; + }; + }; + ## ## Other ## @@ -499,6 +543,9 @@ rec { }; }; + # This function takes a minimally-valid "platform" and returns an + # attrset containing zero or more additional attrs which should be + # included in the platform in order to further elaborate it. select = platform: # x86 /**/ if platform.isx86 then pc diff --git a/lib/tests/misc.nix b/lib/tests/misc.nix index 5fa95828df6..27111903139 100644 --- a/lib/tests/misc.nix +++ b/lib/tests/misc.nix @@ -761,4 +761,156 @@ runTests { { a = 3; b = 30; c = 300; } ]; }; + + # The example from the showAttrPath documentation + testShowAttrPathExample = { + expr = showAttrPath [ "foo" "10" "bar" ]; + expected = "foo.\"10\".bar"; + }; + + testShowAttrPathEmpty = { + expr = showAttrPath []; + expected = "<root attribute path>"; + }; + + testShowAttrPathVarious = { + expr = showAttrPath [ + "." + "foo" + "2" + "a2-b" + "_bc'de" + ]; + expected = ''".".foo."2".a2-b._bc'de''; + }; + + testGroupBy = { + expr = groupBy (n: toString (mod n 5)) (range 0 16); + expected = { + "0" = [ 0 5 10 15 ]; + "1" = [ 1 6 11 16 ]; + "2" = [ 2 7 12 ]; + "3" = [ 3 8 13 ]; + "4" = [ 4 9 14 ]; + }; + }; + + testGroupBy' = { + expr = groupBy' builtins.add 0 (x: boolToString (x > 2)) [ 5 1 2 3 4 ]; + expected = { false = 3; true = 12; }; + }; + + # The example from the updateManyAttrsByPath documentation + testUpdateManyAttrsByPathExample = { + expr = updateManyAttrsByPath [ + { + path = [ "a" "b" ]; + update = old: { d = old.c; }; + } + { + path = [ "a" "b" "c" ]; + update = old: old + 1; + } + { + path = [ "x" "y" ]; + update = old: "xy"; + } + ] { a.b.c = 0; }; + expected = { a = { b = { d = 1; }; }; x = { y = "xy"; }; }; + }; + + # If there are no updates, the value is passed through + testUpdateManyAttrsByPathNone = { + expr = updateManyAttrsByPath [] "something"; + expected = "something"; + }; + + # A single update to the root path is just like applying the function directly + testUpdateManyAttrsByPathSingleIncrement = { + expr = updateManyAttrsByPath [ + { + path = [ ]; + update = old: old + 1; + } + ] 0; + expected = 1; + }; + + # Multiple updates can be applied are done in order + testUpdateManyAttrsByPathMultipleIncrements = { + expr = updateManyAttrsByPath [ + { + path = [ ]; + update = old: old + "a"; + } + { + path = [ ]; + update = old: old + "b"; + } + { + path = [ ]; + update = old: old + "c"; + } + ] ""; + expected = "abc"; + }; + + # If an update doesn't use the value, all previous updates are not evaluated + testUpdateManyAttrsByPathLazy = { + expr = updateManyAttrsByPath [ + { + path = [ ]; + update = old: old + throw "nope"; + } + { + path = [ ]; + update = old: "untainted"; + } + ] (throw "start"); + expected = "untainted"; + }; + + # Deeply nested attributes can be updated without affecting others + testUpdateManyAttrsByPathDeep = { + expr = updateManyAttrsByPath [ + { + path = [ "a" "b" "c" ]; + update = old: old + 1; + } + ] { + a.b.c = 0; + + a.b.z = 0; + a.y.z = 0; + x.y.z = 0; + }; + expected = { + a.b.c = 1; + + a.b.z = 0; + a.y.z = 0; + x.y.z = 0; + }; + }; + + # Nested attributes are updated first + testUpdateManyAttrsByPathNestedBeforehand = { + expr = updateManyAttrsByPath [ + { + path = [ "a" ]; + update = old: old // { x = old.b; }; + } + { + path = [ "a" "b" ]; + update = old: old + 1; + } + ] { + a.b = 0; + }; + expected = { + a.b = 1; + a.x = 1; + }; + }; + } diff --git a/lib/tests/modules.sh b/lib/tests/modules.sh index 350fe85e748..8050c6539fc 100755 --- a/lib/tests/modules.sh +++ b/lib/tests/modules.sh @@ -62,6 +62,13 @@ checkConfigError() { checkConfigOutput '^false$' config.enable ./declare-enable.nix checkConfigError 'The option .* does not exist. Definition values:\n\s*- In .*: true' config.enable ./define-enable.nix +checkConfigOutput '^1$' config.bare-submodule.nested ./declare-bare-submodule.nix ./declare-bare-submodule-nested-option.nix +checkConfigOutput '^2$' config.bare-submodule.deep ./declare-bare-submodule.nix ./declare-bare-submodule-deep-option.nix +checkConfigOutput '^42$' config.bare-submodule.nested ./declare-bare-submodule.nix ./declare-bare-submodule-nested-option.nix ./declare-bare-submodule-deep-option.nix ./define-bare-submodule-values.nix +checkConfigOutput '^420$' config.bare-submodule.deep ./declare-bare-submodule.nix ./declare-bare-submodule-nested-option.nix ./declare-bare-submodule-deep-option.nix ./define-bare-submodule-values.nix +checkConfigOutput '^2$' config.bare-submodule.deep ./declare-bare-submodule.nix ./declare-bare-submodule-deep-option.nix ./define-shorthandOnlyDefinesConfig-true.nix +checkConfigError 'The option .bare-submodule.deep. in .*/declare-bare-submodule-deep-option.nix. is already declared in .*/declare-bare-submodule-deep-option-duplicate.nix' config.bare-submodule.deep ./declare-bare-submodule.nix ./declare-bare-submodule-deep-option.nix ./declare-bare-submodule-deep-option-duplicate.nix + # Check integer types. # unsigned checkConfigOutput '^42$' config.value ./declare-int-unsigned-value.nix ./define-value-int-positive.nix @@ -304,6 +311,12 @@ checkConfigOutput "10" config.processedToplevel ./raw.nix checkConfigError "The option .multiple. is defined multiple times" config.multiple ./raw.nix checkConfigOutput "bar" config.priorities ./raw.nix +## Option collision +checkConfigError \ + 'The option .set. in module .*/declare-set.nix. would be a parent of the following options, but its type .attribute set of signed integers. does not support nested options.\n\s*- option[(]s[)] with prefix .set.enable. in module .*/declare-enable-nested.nix.' \ + config.set \ + ./declare-set.nix ./declare-enable-nested.nix + # Test that types.optionType merges types correctly checkConfigOutput '^10$' config.theOption.int ./optionTypeMerging.nix checkConfigOutput '^"hello"$' config.theOption.str ./optionTypeMerging.nix diff --git a/lib/tests/modules/declare-bare-submodule-deep-option-duplicate.nix b/lib/tests/modules/declare-bare-submodule-deep-option-duplicate.nix new file mode 100644 index 00000000000..06ad1f6e0a5 --- /dev/null +++ b/lib/tests/modules/declare-bare-submodule-deep-option-duplicate.nix @@ -0,0 +1,10 @@ +{ lib, ... }: +let + inherit (lib) mkOption types; +in +{ + options.bare-submodule.deep = mkOption { + type = types.int; + default = 2; + }; +} diff --git a/lib/tests/modules/declare-bare-submodule-deep-option.nix b/lib/tests/modules/declare-bare-submodule-deep-option.nix new file mode 100644 index 00000000000..06ad1f6e0a5 --- /dev/null +++ b/lib/tests/modules/declare-bare-submodule-deep-option.nix @@ -0,0 +1,10 @@ +{ lib, ... }: +let + inherit (lib) mkOption types; +in +{ + options.bare-submodule.deep = mkOption { + type = types.int; + default = 2; + }; +} diff --git a/lib/tests/modules/declare-bare-submodule-nested-option.nix b/lib/tests/modules/declare-bare-submodule-nested-option.nix new file mode 100644 index 00000000000..da125c84b25 --- /dev/null +++ b/lib/tests/modules/declare-bare-submodule-nested-option.nix @@ -0,0 +1,19 @@ +{ config, lib, ... }: +let + inherit (lib) mkOption types; +in +{ + options.bare-submodule = mkOption { + type = types.submoduleWith { + shorthandOnlyDefinesConfig = config.shorthandOnlyDefinesConfig; + modules = [ + { + options.nested = mkOption { + type = types.int; + default = 1; + }; + } + ]; + }; + }; +} diff --git a/lib/tests/modules/declare-bare-submodule.nix b/lib/tests/modules/declare-bare-submodule.nix new file mode 100644 index 00000000000..5402f4ff5a5 --- /dev/null +++ b/lib/tests/modules/declare-bare-submodule.nix @@ -0,0 +1,18 @@ +{ config, lib, ... }: +let + inherit (lib) mkOption types; +in +{ + options.bare-submodule = mkOption { + type = types.submoduleWith { + modules = [ ]; + shorthandOnlyDefinesConfig = config.shorthandOnlyDefinesConfig; + }; + default = {}; + }; + + # config-dependent options: won't recommend, but useful for making this test parameterized + options.shorthandOnlyDefinesConfig = mkOption { + default = false; + }; +} diff --git a/lib/tests/modules/declare-set.nix b/lib/tests/modules/declare-set.nix new file mode 100644 index 00000000000..853418531a8 --- /dev/null +++ b/lib/tests/modules/declare-set.nix @@ -0,0 +1,12 @@ +{ lib, ... }: + +{ + options.set = lib.mkOption { + default = { }; + example = { a = 1; }; + type = lib.types.attrsOf lib.types.int; + description = '' + Some descriptive text + ''; + }; +} diff --git a/lib/tests/modules/define-bare-submodule-values.nix b/lib/tests/modules/define-bare-submodule-values.nix new file mode 100644 index 00000000000..00ede929ee6 --- /dev/null +++ b/lib/tests/modules/define-bare-submodule-values.nix @@ -0,0 +1,4 @@ +{ + bare-submodule.nested = 42; + bare-submodule.deep = 420; +} diff --git a/lib/tests/modules/define-shorthandOnlyDefinesConfig-true.nix b/lib/tests/modules/define-shorthandOnlyDefinesConfig-true.nix new file mode 100644 index 00000000000..bd3a73dce34 --- /dev/null +++ b/lib/tests/modules/define-shorthandOnlyDefinesConfig-true.nix @@ -0,0 +1 @@ +{ shorthandOnlyDefinesConfig = true; } diff --git a/lib/tests/systems.nix b/lib/tests/systems.nix index 2646e792682..c88adbf4651 100644 --- a/lib/tests/systems.nix +++ b/lib/tests/systems.nix @@ -17,7 +17,7 @@ with lib.systems.doubles; lib.runTests { testarm = mseteq arm [ "armv5tel-linux" "armv6l-linux" "armv6l-netbsd" "armv6l-none" "armv7a-linux" "armv7a-netbsd" "armv7l-linux" "armv7l-netbsd" "arm-none" "armv7a-darwin" ]; testi686 = mseteq i686 [ "i686-linux" "i686-freebsd" "i686-genode" "i686-netbsd" "i686-openbsd" "i686-cygwin" "i686-windows" "i686-none" "i686-darwin" ]; - testmips = mseteq mips [ "mipsel-linux" "mipsel-netbsd" ]; + testmips = mseteq mips [ "mips64el-linux" "mipsel-linux" "mipsel-netbsd" ]; testmmix = mseteq mmix [ "mmix-mmixware" ]; testx86_64 = mseteq x86_64 [ "x86_64-linux" "x86_64-darwin" "x86_64-freebsd" "x86_64-genode" "x86_64-redox" "x86_64-openbsd" "x86_64-netbsd" "x86_64-cygwin" "x86_64-solaris" "x86_64-windows" "x86_64-none" ]; @@ -28,7 +28,7 @@ with lib.systems.doubles; lib.runTests { testredox = mseteq redox [ "x86_64-redox" ]; testgnu = mseteq gnu (linux /* ++ kfreebsd ++ ... */); testillumos = mseteq illumos [ "x86_64-solaris" ]; - testlinux = mseteq linux [ "aarch64-linux" "armv5tel-linux" "armv6l-linux" "armv7a-linux" "armv7l-linux" "i686-linux" "mipsel-linux" "riscv32-linux" "riscv64-linux" "x86_64-linux" "powerpc64-linux" "powerpc64le-linux" "m68k-linux" "s390-linux" "s390x-linux" ]; + testlinux = mseteq linux [ "aarch64-linux" "armv5tel-linux" "armv6l-linux" "armv7a-linux" "armv7l-linux" "i686-linux" "mips64el-linux" "mipsel-linux" "riscv32-linux" "riscv64-linux" "x86_64-linux" "powerpc64-linux" "powerpc64le-linux" "m68k-linux" "s390-linux" "s390x-linux" ]; testnetbsd = mseteq netbsd [ "aarch64-netbsd" "armv6l-netbsd" "armv7a-netbsd" "armv7l-netbsd" "i686-netbsd" "m68k-netbsd" "mipsel-netbsd" "powerpc-netbsd" "riscv32-netbsd" "riscv64-netbsd" "x86_64-netbsd" ]; testopenbsd = mseteq openbsd [ "i686-openbsd" "x86_64-openbsd" ]; testwindows = mseteq windows [ "i686-cygwin" "x86_64-cygwin" "i686-windows" "x86_64-windows" ]; diff --git a/lib/types.nix b/lib/types.nix index 3078615f5dd..00d97bf5723 100644 --- a/lib/types.nix +++ b/lib/types.nix @@ -572,14 +572,18 @@ rec { let inherit (lib.modules) evalModules; - coerce = unify: value: if isFunction value - then setFunctionArgs (args: unify (value args)) (functionArgs value) - else unify (if shorthandOnlyDefinesConfig then { config = value; } else value); + shorthandToModule = if shorthandOnlyDefinesConfig == false + then value: value + else value: { config = value; }; allModules = defs: imap1 (n: { value, file }: - if isAttrs value || isFunction value then - # Annotate the value with the location of its definition for better error messages - coerce (lib.modules.unifyModuleSyntax file "${toString file}-${toString n}") value + if isFunction value + then setFunctionArgs + (args: lib.modules.unifyModuleSyntax file "${toString file}-${toString n}" (value args)) + (functionArgs value) + else if isAttrs value + then + lib.modules.unifyModuleSyntax file "${toString file}-${toString n}" (shorthandToModule value) else value ) defs; @@ -647,7 +651,11 @@ rec { then lhs.specialArgs // rhs.specialArgs else throw "A submoduleWith option is declared multiple times with the same specialArgs \"${toString (attrNames intersecting)}\""; shorthandOnlyDefinesConfig = - if lhs.shorthandOnlyDefinesConfig == rhs.shorthandOnlyDefinesConfig + if lhs.shorthandOnlyDefinesConfig == null + then rhs.shorthandOnlyDefinesConfig + else if rhs.shorthandOnlyDefinesConfig == null + then lhs.shorthandOnlyDefinesConfig + else if lhs.shorthandOnlyDefinesConfig == rhs.shorthandOnlyDefinesConfig then lhs.shorthandOnlyDefinesConfig else throw "A submoduleWith option is declared multiple times with conflicting shorthandOnlyDefinesConfig values"; }; diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix index 99b64520ffa..fea30c74954 100644 --- a/maintainers/maintainer-list.nix +++ b/maintainers/maintainer-list.nix @@ -1901,6 +1901,12 @@ githubId = 82591; name = "Carl Sverre"; }; + carpinchomug = { + email = "aki.suda@protonmail.com"; + github = "carpinchomug"; + githubId = 101536256; + name = "Akiyoshi Suda"; + }; cartr = { email = "carter.sande@duodecima.technology"; github = "cartr"; @@ -7241,6 +7247,12 @@ githubId = 918448; name = "Anthony Lodi"; }; + loicreynier = { + email = "loic@loireynier.fr"; + github = "loicreynier"; + githubId = 88983487; + name = "Loïc Reynier"; + }; lopsided98 = { email = "benwolsieffer@gmail.com"; github = "lopsided98"; @@ -8710,6 +8722,12 @@ fingerprint = "4BFF 0614 03A2 47F0 AA0B 4BC4 916D 8B67 2418 92AE"; }]; }; + nbr = { + email = "nbr@users.noreply.github.com"; + github = "nbr"; + githubId = 3819225; + name = "Nick Braga"; + }; nbren12 = { email = "nbren12@gmail.com"; github = "nbren12"; @@ -10374,6 +10392,12 @@ githubId = 22803888; name = "Lu Hongxu"; }; + rgnns = { + email = "jglievano@gmail.com"; + github = "rgnns"; + githubId = 811827; + name = "Gabriel Lievano"; + }; rgrunbla = { email = "remy@grunblatt.org"; github = "rgrunbla"; diff --git a/nixos/doc/manual/development/option-declarations.section.md b/nixos/doc/manual/development/option-declarations.section.md index 819fc6d891f..53ecb9b3a62 100644 --- a/nixos/doc/manual/development/option-declarations.section.md +++ b/nixos/doc/manual/development/option-declarations.section.md @@ -27,9 +27,10 @@ The function `mkOption` accepts the following arguments. `type` -: The type of the option (see [](#sec-option-types)). It may be - omitted, but that's not advisable since it may lead to errors that - are hard to diagnose. +: The type of the option (see [](#sec-option-types)). This + argument is mandatory for nixpkgs modules. Setting this is highly + recommended for the sake of documentation and type checking. In case it is + not set, a fallback type with unspecified behavior is used. `default` diff --git a/nixos/doc/manual/from_md/development/option-declarations.section.xml b/nixos/doc/manual/from_md/development/option-declarations.section.xml index 554705e2e42..0ac5e0eeca2 100644 --- a/nixos/doc/manual/from_md/development/option-declarations.section.xml +++ b/nixos/doc/manual/from_md/development/option-declarations.section.xml @@ -38,9 +38,11 @@ options = { <listitem> <para> The type of the option (see - <xref linkend="sec-option-types" />). It may be omitted, but - that’s not advisable since it may lead to errors that are hard - to diagnose. + <xref linkend="sec-option-types" />). This argument is + mandatory for nixpkgs modules. Setting this is highly + recommended for the sake of documentation and type checking. + In case it is not set, a fallback type with unspecified + behavior is used. </para> </listitem> </varlistentry> diff --git a/nixos/doc/manual/from_md/release-notes/rl-2205.section.xml b/nixos/doc/manual/from_md/release-notes/rl-2205.section.xml index 396de8cd77c..9389905e09f 100644 --- a/nixos/doc/manual/from_md/release-notes/rl-2205.section.xml +++ b/nixos/doc/manual/from_md/release-notes/rl-2205.section.xml @@ -306,6 +306,12 @@ with many features. </para> </listitem> + <listitem> + <para> + <link xlink:href="https://clusterlabs.org/pacemaker/">pacemaker</link> + cluster resource manager + </para> + </listitem> </itemizedlist> </section> <section xml:id="sec-release-22.05-incompatibilities"> @@ -462,6 +468,12 @@ freeform type. </para> <para> + The <literal>listeners.*.bind_address</literal> option was + renamed to <literal>bind_addresses</literal> in order to match + the upstream <literal>homeserver.yaml</literal> option name. + It is now also a list of strings instead of a string. + </para> + <para> An example to make the required migration clearer: </para> <para> @@ -522,7 +534,7 @@ listeners = [ { port = 8448; - bind_address = [ + bind_addresses = [ "::" "0.0.0.0" ]; @@ -553,7 +565,14 @@ Additionally a few option defaults have been synced up with upstream default values, for example the <literal>max_upload_size</literal> grew from - <literal>10M</literal> to <literal>50M</literal>. + <literal>10M</literal> to <literal>50M</literal>. For the same + reason, the default <literal>media_store_path</literal> was + changed from <literal>${dataDir}/media</literal> to + <literal>${dataDir}/media_store</literal> if + <literal>system.stateVersion</literal> is at least + <literal>22.05</literal>. Files will need to be manually moved + to the new location if the <literal>stateVersion</literal> is + updated. </para> </listitem> <listitem> @@ -565,6 +584,25 @@ </listitem> <listitem> <para> + Services in the <literal>hadoop</literal> module previously + set <literal>openFirewall</literal> to true by default. This + has now been changed to false. Node definitions for multi-node + clusters would need <literal>openFirewall = true;</literal> to + be added to to hadoop services when upgrading from NixOS + 21.11. + </para> + </listitem> + <listitem> + <para> + <literal>services.hadoop.yarn.nodemanager</literal> now uses + cgroup-based CPU limit enforcement by default. Additionally, + the option <literal>useCGroups</literal> was added to + nodemanagers as an easy way to switch back to the old + behavior. + </para> + </listitem> + <listitem> + <para> The <literal>wafHook</literal> hook now honors <literal>NIX_BUILD_CORES</literal> when <literal>enableParallelBuilding</literal> is not set @@ -737,6 +775,12 @@ </listitem> <listitem> <para> + <literal>pkgs._7zz</literal> is now correctly licensed as + LGPL3+ and BSD3 with optional unfree unRAR licensed code + </para> + </listitem> + <listitem> + <para> <literal>tilp2</literal> was removed together with its module </para> </listitem> @@ -1169,6 +1213,33 @@ </listitem> <listitem> <para> + Some improvements have been made to the + <literal>hadoop</literal> module: + </para> + <itemizedlist spacing="compact"> + <listitem> + <para> + A <literal>gatewayRole</literal> option has been added, + for deploying hadoop cluster configuration files to a node + that does not have any active services + </para> + </listitem> + <listitem> + <para> + Support for older versions of hadoop have been added to + the module + </para> + </listitem> + <listitem> + <para> + Overriding and extending site XML files has been made + easier + </para> + </listitem> + </itemizedlist> + </listitem> + <listitem> + <para> If you are using Wayland you can choose to use the Ozone Wayland support in Chrome and several Electron apps by setting the environment variable <literal>NIXOS_OZONE_WL=1</literal> @@ -1192,6 +1263,14 @@ </listitem> <listitem> <para> + The <literal>unifi</literal> package was switched from + <literal>unifi6</literal> to <literal>unifi7</literal>. Direct + downgrades from Unifi 7 to Unifi 6 are not possible and + require restoring from a backup made by Unifi 6. + </para> + </listitem> + <listitem> + <para> <literal>programs.zsh.autosuggestions.strategy</literal> now takes a list of strings instead of a string. </para> @@ -1267,10 +1346,10 @@ </listitem> <listitem> <para> - A new option - <literal>boot.initrd.extraModprobeConfig</literal> has been - added which can be used to configure kernel modules that are - loaded in the initrd. + The options <literal>boot.extraModprobeConfig</literal> and + <literal>boot.blacklistedKernelModules</literal> now also take + effect in the initrd by copying the file + <literal>/etc/modprobe.d/nixos.conf</literal> into the initrd. </para> </listitem> <listitem> @@ -1282,6 +1361,52 @@ </listitem> <listitem> <para> + ORY Kratos was updated to version 0.8.3-alpha.1.pre.0, which + introduces some breaking changes: + </para> + <itemizedlist spacing="compact"> + <listitem> + <para> + If you are relying on the SQLite images, update your + Docker Pull commands as follows: + </para> + <itemizedlist spacing="compact"> + <listitem> + <para> + <literal>docker pull oryd/kratos:{version}</literal> + </para> + </listitem> + </itemizedlist> + </listitem> + <listitem> + <para> + Additionally, all passwords now have to be at least 8 + characters long. + </para> + </listitem> + <listitem> + <para> + For more details, see: + </para> + <itemizedlist spacing="compact"> + <listitem> + <para> + <link xlink:href="https://github.com/ory/kratos/releases/tag/v0.8.1-alpha.1">Release + Notes for v0.8.1-alpha-1</link> + </para> + </listitem> + <listitem> + <para> + <link xlink:href="https://github.com/ory/kratos/releases/tag/v0.8.2-alpha.1">Release + Notes for v0.8.2-alpha-1</link> + </para> + </listitem> + </itemizedlist> + </listitem> + </itemizedlist> + </listitem> + <listitem> + <para> <literal>fetchFromSourcehut</literal> now allows fetching repositories recursively using <literal>fetchgit</literal> or <literal>fetchhg</literal> if the argument @@ -1450,6 +1575,46 @@ desktop environments as needed. </para> </listitem> + <listitem> + <para> + The <literal>hadoop</literal> package has added support for + <literal>aarch64-linux</literal> and + <literal>aarch64-darwin</literal> as of 3.3.1 + (<link xlink:href="https://github.com/NixOS/nixpkgs/pull/158613">#158613</link>). + </para> + </listitem> + <listitem> + <para> + The <literal>R</literal> package now builds again on + <literal>aarch64-darwin</literal> + (<link xlink:href="https://github.com/NixOS/nixpkgs/pull/158992">#158992</link>). + </para> + </listitem> + <listitem> + <para> + The <literal>spark3</literal> package has been updated from + 3.1.2 to 3.2.1 + (<link xlink:href="https://github.com/NixOS/nixpkgs/pull/160075">#160075</link>): + </para> + <itemizedlist spacing="compact"> + <listitem> + <para> + Testing has been enabled for + <literal>aarch64-linux</literal> in addition to + <literal>x86_64-linux</literal>. + </para> + </listitem> + <listitem> + <para> + The <literal>spark3</literal> package is now usable on + <literal>aarch64-darwin</literal> as a result of + <link xlink:href="https://github.com/NixOS/nixpkgs/pull/158613">#158613</link> + and + <link xlink:href="https://github.com/NixOS/nixpkgs/pull/158992">#158992</link>. + </para> + </listitem> + </itemizedlist> + </listitem> </itemizedlist> </section> </section> diff --git a/nixos/doc/manual/release-notes/rl-2205.section.md b/nixos/doc/manual/release-notes/rl-2205.section.md index 2f730de737c..fdd3874b240 100644 --- a/nixos/doc/manual/release-notes/rl-2205.section.md +++ b/nixos/doc/manual/release-notes/rl-2205.section.md @@ -87,6 +87,8 @@ In addition to numerous new and upgraded packages, this release has the followin - [blocky](https://0xerr0r.github.io/blocky/), fast and lightweight DNS proxy as ad-blocker for local network with many features. +- [pacemaker](https://clusterlabs.org/pacemaker/) cluster resource manager + <!-- To avoid merge conflicts, consider adding your item at an arbitrary place in the list instead. --> ## Backward Incompatibilities {#sec-release-22.05-incompatibilities} @@ -156,6 +158,9 @@ In addition to numerous new and upgraded packages, this release has the followin module (`services.matrix-synapse`) now need to be moved into `services.matrix-synapse.settings`. And while not all options you may use are defined in there, they are still supported, because you can set arbitrary values in this freeform type. + The `listeners.*.bind_address` option was renamed to `bind_addresses` in order to match the upstream `homeserver.yaml` option + name. It is now also a list of strings instead of a string. + An example to make the required migration clearer: Before: @@ -213,7 +218,7 @@ In addition to numerous new and upgraded packages, this release has the followin listeners = [ { port = 8448; - bind_address = [ + bind_addresses = [ "::" "0.0.0.0" ]; @@ -238,10 +243,20 @@ In addition to numerous new and upgraded packages, this release has the followin The secrets in your original config should be migrated into a YAML file that is included via `extraConfigFiles`. - Additionally a few option defaults have been synced up with upstream default values, for example the `max_upload_size` grew from `10M` to `50M`. + Additionally a few option defaults have been synced up with upstream default values, for example the `max_upload_size` grew from `10M` to `50M`. For the same reason, the default + `media_store_path` was changed from `${dataDir}/media` to `${dataDir}/media_store` if `system.stateVersion` is at least `22.05`. Files will need to be manually moved to the new + location if the `stateVersion` is updated. - The MoinMoin wiki engine (`services.moinmoin`) has been removed, because Python 2 is being retired from nixpkgs. +- Services in the `hadoop` module previously set `openFirewall` to true by default. + This has now been changed to false. Node definitions for multi-node clusters would need + `openFirewall = true;` to be added to to hadoop services when upgrading from NixOS 21.11. + +- `services.hadoop.yarn.nodemanager` now uses cgroup-based CPU limit enforcement by default. + Additionally, the option `useCGroups` was added to nodemanagers as an easy way to switch + back to the old behavior. + - The `wafHook` hook now honors `NIX_BUILD_CORES` when `enableParallelBuilding` is not set explicitly. Packages can restore the old behaviour by setting `enableParallelBuilding=false`. - `pkgs.claws-mail-gtk2`, representing Claws Mail's older release version three, was removed in order to get rid of Python 2. @@ -294,6 +309,8 @@ In addition to numerous new and upgraded packages, this release has the followin - `pkgs.docbookrx` was removed since it's unmaintained +- `pkgs._7zz` is now correctly licensed as LGPL3+ and BSD3 with optional unfree unRAR licensed code + - `tilp2` was removed together with its module - The F-PROT antivirus (`fprot` package) and its service module were removed because it @@ -434,6 +451,11 @@ In addition to numerous new and upgraded packages, this release has the followin - The `writers.writePyPy2`/`writers.writePyPy3` and corresponding `writers.writePyPy2Bin`/`writers.writePyPy3Bin` convenience functions to create executable Python 2/3 scripts using the PyPy interpreter were added. +- Some improvements have been made to the `hadoop` module: + - A `gatewayRole` option has been added, for deploying hadoop cluster configuration files to a node that does not have any active services + - Support for older versions of hadoop have been added to the module + - Overriding and extending site XML files has been made easier + - If you are using Wayland you can choose to use the Ozone Wayland support in Chrome and several Electron apps by setting the environment variable `NIXOS_OZONE_WL=1` (for example via @@ -447,6 +469,9 @@ In addition to numerous new and upgraded packages, this release has the followin combined `influxdb2` package is still provided in this release for backwards compatibilty, but will be removed at a later date. +- The `unifi` package was switched from `unifi6` to `unifi7`. + Direct downgrades from Unifi 7 to Unifi 6 are not possible and require restoring from a backup made by Unifi 6. + - `programs.zsh.autosuggestions.strategy` now takes a list of strings instead of a string. - The `services.unifi.openPorts` option default value of `true` is now deprecated and will be changed to `false` in 22.11. @@ -476,10 +501,18 @@ In addition to numerous new and upgraded packages, this release has the followin - The option `services.duplicati.dataDir` has been added to allow changing the location of duplicati's files. -- A new option `boot.initrd.extraModprobeConfig` has been added which can be used to configure kernel modules that are loaded in the initrd. +- The options `boot.extraModprobeConfig` and `boot.blacklistedKernelModules` now also take effect in the initrd by copying the file `/etc/modprobe.d/nixos.conf` into the initrd. - `nixos-generate-config` now puts the dhcp configuration in `hardware-configuration.nix` instead of `configuration.nix`. +- ORY Kratos was updated to version 0.8.3-alpha.1.pre.0, which introduces some breaking changes: + - If you are relying on the SQLite images, update your Docker Pull commands as follows: + - `docker pull oryd/kratos:{version}` + - Additionally, all passwords now have to be at least 8 characters long. + - For more details, see: + - [Release Notes for v0.8.1-alpha-1](https://github.com/ory/kratos/releases/tag/v0.8.1-alpha.1) + - [Release Notes for v0.8.2-alpha-1](https://github.com/ory/kratos/releases/tag/v0.8.2-alpha.1) + - `fetchFromSourcehut` now allows fetching repositories recursively using `fetchgit` or `fetchhg` if the argument `fetchSubmodules` is set to `true`. @@ -535,4 +568,13 @@ In addition to numerous new and upgraded packages, this release has the followin - The polkit service, available at `security.polkit.enable`, is now disabled by default. It will automatically be enabled through services and desktop environments as needed. +- The `hadoop` package has added support for `aarch64-linux` and `aarch64-darwin` as of 3.3.1 ([#158613](https://github.com/NixOS/nixpkgs/pull/158613)). + +- The `R` package now builds again on `aarch64-darwin` ([#158992](https://github.com/NixOS/nixpkgs/pull/158992)). + +- The `spark3` package has been updated from 3.1.2 to 3.2.1 ([#160075](https://github.com/NixOS/nixpkgs/pull/160075)): + + - Testing has been enabled for `aarch64-linux` in addition to `x86_64-linux`. + - The `spark3` package is now usable on `aarch64-darwin` as a result of [#158613](https://github.com/NixOS/nixpkgs/pull/158613) and [#158992](https://github.com/NixOS/nixpkgs/pull/158992). + <!-- To avoid merge conflicts, consider adding your item at an arbitrary place in the list instead. --> diff --git a/nixos/lib/make-options-doc/mergeJSON.py b/nixos/lib/make-options-doc/mergeJSON.py index 029787a3158..8e2ea322dc8 100644 --- a/nixos/lib/make-options-doc/mergeJSON.py +++ b/nixos/lib/make-options-doc/mergeJSON.py @@ -66,14 +66,21 @@ for (k, v) in overrides.items(): elif ov is not None or cur.get(ok, None) is None: cur[ok] = ov +severity = "error" if warningsAreErrors else "warning" + # check that every option has a description hasWarnings = False for (k, v) in options.items(): if v.value.get('description', None) is None: - severity = "error" if warningsAreErrors else "warning" hasWarnings = True print(f"\x1b[1;31m{severity}: option {v.name} has no description\x1b[0m", file=sys.stderr) v.value['description'] = "This option has no description." + if v.value.get('type', "unspecified") == "unspecified": + hasWarnings = True + print( + f"\x1b[1;31m{severity}: option {v.name} has no type. Please specify a valid type, see " + + "https://nixos.org/manual/nixos/stable/index.html#sec-option-types\x1b[0m", file=sys.stderr) + if hasWarnings and warningsAreErrors: print( "\x1b[1;31m" + diff --git a/nixos/lib/systemd-lib.nix b/nixos/lib/systemd-lib.nix index ab166d7327c..a472d97f5cc 100644 --- a/nixos/lib/systemd-lib.nix +++ b/nixos/lib/systemd-lib.nix @@ -5,6 +5,7 @@ with lib; let cfg = config.systemd; lndir = "${pkgs.buildPackages.xorg.lndir}/bin/lndir"; + systemd = cfg.package; in rec { shellEscape = s: (replaceChars [ "\\" ] [ "\\\\" ] s); @@ -235,4 +236,205 @@ in rec { ''} ''; # */ + makeJobScript = name: text: + let + scriptName = replaceChars [ "\\" "@" ] [ "-" "_" ] (shellEscape name); + out = (pkgs.writeShellScriptBin scriptName '' + set -e + ${text} + '').overrideAttrs (_: { + # The derivation name is different from the script file name + # to keep the script file name short to avoid cluttering logs. + name = "unit-script-${scriptName}"; + }); + in "${out}/bin/${scriptName}"; + + unitConfig = { config, options, ... }: { + config = { + unitConfig = + optionalAttrs (config.requires != []) + { Requires = toString config.requires; } + // optionalAttrs (config.wants != []) + { Wants = toString config.wants; } + // optionalAttrs (config.after != []) + { After = toString config.after; } + // optionalAttrs (config.before != []) + { Before = toString config.before; } + // optionalAttrs (config.bindsTo != []) + { BindsTo = toString config.bindsTo; } + // optionalAttrs (config.partOf != []) + { PartOf = toString config.partOf; } + // optionalAttrs (config.conflicts != []) + { Conflicts = toString config.conflicts; } + // optionalAttrs (config.requisite != []) + { Requisite = toString config.requisite; } + // optionalAttrs (config.restartTriggers != []) + { X-Restart-Triggers = toString config.restartTriggers; } + // optionalAttrs (config.reloadTriggers != []) + { X-Reload-Triggers = toString config.reloadTriggers; } + // optionalAttrs (config.description != "") { + Description = config.description; } + // optionalAttrs (config.documentation != []) { + Documentation = toString config.documentation; } + // optionalAttrs (config.onFailure != []) { + OnFailure = toString config.onFailure; } + // optionalAttrs (options.startLimitIntervalSec.isDefined) { + StartLimitIntervalSec = toString config.startLimitIntervalSec; + } // optionalAttrs (options.startLimitBurst.isDefined) { + StartLimitBurst = toString config.startLimitBurst; + }; + }; + }; + + serviceConfig = { name, config, ... }: { + config = mkMerge + [ { # Default path for systemd services. Should be quite minimal. + path = mkAfter + [ pkgs.coreutils + pkgs.findutils + pkgs.gnugrep + pkgs.gnused + systemd + ]; + environment.PATH = "${makeBinPath config.path}:${makeSearchPathOutput "bin" "sbin" config.path}"; + } + (mkIf (config.preStart != "") + { serviceConfig.ExecStartPre = + [ (makeJobScript "${name}-pre-start" config.preStart) ]; + }) + (mkIf (config.script != "") + { serviceConfig.ExecStart = + makeJobScript "${name}-start" config.script + " " + config.scriptArgs; + }) + (mkIf (config.postStart != "") + { serviceConfig.ExecStartPost = + [ (makeJobScript "${name}-post-start" config.postStart) ]; + }) + (mkIf (config.reload != "") + { serviceConfig.ExecReload = + makeJobScript "${name}-reload" config.reload; + }) + (mkIf (config.preStop != "") + { serviceConfig.ExecStop = + makeJobScript "${name}-pre-stop" config.preStop; + }) + (mkIf (config.postStop != "") + { serviceConfig.ExecStopPost = + makeJobScript "${name}-post-stop" config.postStop; + }) + ]; + }; + + mountConfig = { config, ... }: { + config = { + mountConfig = + { What = config.what; + Where = config.where; + } // optionalAttrs (config.type != "") { + Type = config.type; + } // optionalAttrs (config.options != "") { + Options = config.options; + }; + }; + }; + + automountConfig = { config, ... }: { + config = { + automountConfig = + { Where = config.where; + }; + }; + }; + + commonUnitText = def: '' + [Unit] + ${attrsToSection def.unitConfig} + ''; + + targetToUnit = name: def: + { inherit (def) aliases wantedBy requiredBy enable; + text = + '' + [Unit] + ${attrsToSection def.unitConfig} + ''; + }; + + serviceToUnit = name: def: + { inherit (def) aliases wantedBy requiredBy enable; + text = commonUnitText def + + '' + [Service] + ${let env = cfg.globalEnvironment // def.environment; + in concatMapStrings (n: + let s = optionalString (env.${n} != null) + "Environment=${builtins.toJSON "${n}=${env.${n}}"}\n"; + # systemd max line length is now 1MiB + # https://github.com/systemd/systemd/commit/e6dde451a51dc5aaa7f4d98d39b8fe735f73d2af + in if stringLength s >= 1048576 then throw "The value of the environment variable ‘${n}’ in systemd service ‘${name}.service’ is too long." else s) (attrNames env)} + ${if def.reloadIfChanged then '' + X-ReloadIfChanged=true + '' else if !def.restartIfChanged then '' + X-RestartIfChanged=false + '' else ""} + ${optionalString (!def.stopIfChanged) "X-StopIfChanged=false"} + ${attrsToSection def.serviceConfig} + ''; + }; + + socketToUnit = name: def: + { inherit (def) aliases wantedBy requiredBy enable; + text = commonUnitText def + + '' + [Socket] + ${attrsToSection def.socketConfig} + ${concatStringsSep "\n" (map (s: "ListenStream=${s}") def.listenStreams)} + ${concatStringsSep "\n" (map (s: "ListenDatagram=${s}") def.listenDatagrams)} + ''; + }; + + timerToUnit = name: def: + { inherit (def) aliases wantedBy requiredBy enable; + text = commonUnitText def + + '' + [Timer] + ${attrsToSection def.timerConfig} + ''; + }; + + pathToUnit = name: def: + { inherit (def) aliases wantedBy requiredBy enable; + text = commonUnitText def + + '' + [Path] + ${attrsToSection def.pathConfig} + ''; + }; + + mountToUnit = name: def: + { inherit (def) aliases wantedBy requiredBy enable; + text = commonUnitText def + + '' + [Mount] + ${attrsToSection def.mountConfig} + ''; + }; + + automountToUnit = name: def: + { inherit (def) aliases wantedBy requiredBy enable; + text = commonUnitText def + + '' + [Automount] + ${attrsToSection def.automountConfig} + ''; + }; + + sliceToUnit = name: def: + { inherit (def) aliases wantedBy requiredBy enable; + text = commonUnitText def + + '' + [Slice] + ${attrsToSection def.sliceConfig} + ''; + }; } diff --git a/nixos/modules/installer/tools/nixos-enter.sh b/nixos/modules/installer/tools/nixos-enter.sh index 115b3d7a7c5..89beeee7cf9 100644 --- a/nixos/modules/installer/tools/nixos-enter.sh +++ b/nixos/modules/installer/tools/nixos-enter.sh @@ -63,32 +63,32 @@ mount --rbind /sys "$mountPoint/sys" # modified from https://github.com/archlinux/arch-install-scripts/blob/bb04ab435a5a89cd5e5ee821783477bc80db797f/arch-chroot.in#L26-L52 chroot_add_resolv_conf() { - local chrootdir=$1 resolv_conf=$1/etc/resolv.conf + local chrootDir="$1" resolvConf="$1/etc/resolv.conf" [[ -e /etc/resolv.conf ]] || return 0 # Handle resolv.conf as a symlink to somewhere else. - if [[ -L $chrootdir/etc/resolv.conf ]]; then + if [[ -L "$resolvConf" ]]; then # readlink(1) should always give us *something* since we know at this point # it's a symlink. For simplicity, ignore the case of nested symlinks. - # We also ignore the possibility if `../`s escaping the root. - resolv_conf=$(readlink "$chrootdir/etc/resolv.conf") - if [[ $resolv_conf = /* ]]; then - resolv_conf=$chrootdir$resolv_conf + # We also ignore the possibility of `../`s escaping the root. + resolvConf="$(readlink "$resolvConf")" + if [[ "$resolvConf" = /* ]]; then + resolvConf="$chrootDir$resolvConf" else - resolv_conf=$chrootdir/etc/$resolv_conf + resolvConf="$chrootDir/etc/$resolvConf" fi fi # ensure file exists to bind mount over - if [[ ! -f $resolv_conf ]]; then - install -Dm644 /dev/null "$resolv_conf" || return 1 + if [[ ! -f "$resolvConf" ]]; then + install -Dm644 /dev/null "$resolvConf" || return 1 fi - mount --bind /etc/resolv.conf "$resolv_conf" + mount --bind /etc/resolv.conf "$resolvConf" } -chroot_add_resolv_conf "$mountPoint" || print "ERROR: failed to set up resolv.conf" +chroot_add_resolv_conf "$mountPoint" || echo "$0: failed to set up resolv.conf" >&2 ( # If silent, write both stdout and stderr of activation script to /dev/null diff --git a/nixos/modules/misc/locate.nix b/nixos/modules/misc/locate.nix index 66a49b0b888..204a8914300 100644 --- a/nixos/modules/misc/locate.nix +++ b/nixos/modules/misc/locate.nix @@ -183,7 +183,11 @@ in pruneNames = mkOption { type = listOf str; - default = [ ".bzr" ".cache" ".git" ".hg" ".svn" ]; + default = lib.optionals (!isFindutils) [ ".bzr" ".cache" ".git" ".hg" ".svn" ]; + defaultText = literalDocBook '' + <literal>[ ".bzr" ".cache" ".git" ".hg" ".svn" ]</literal>, if + supported by the locate implementation (i.e. mlocate or plocate). + ''; description = '' Directory components which should exclude paths containing them from indexing ''; diff --git a/nixos/modules/misc/version.nix b/nixos/modules/misc/version.nix index 6c072021ed8..d825f4beb30 100644 --- a/nixos/modules/misc/version.nix +++ b/nixos/modules/misc/version.nix @@ -8,8 +8,12 @@ let concatStringsSep mapAttrsToList toLower literalExpression mkRenamedOptionModule mkDefault mkOption trivial types; + needsEscaping = s: null != builtins.match "[a-zA-Z0-9]+" s; + escapeIfNeccessary = s: if needsEscaping s then s else ''"${lib.escape [ "\$" "\"" "\\" "\`" ] s}"''; attrsToText = attrs: - concatStringsSep "\n" (mapAttrsToList (n: v: ''${n}="${toString v}"'') attrs); + concatStringsSep "\n" ( + mapAttrsToList (n: v: ''${n}=${escapeIfNeccessary (toString v)}'') attrs + ); in { diff --git a/nixos/modules/module-list.nix b/nixos/modules/module-list.nix index 13703968167..68f9c6c1227 100644 --- a/nixos/modules/module-list.nix +++ b/nixos/modules/module-list.nix @@ -302,6 +302,7 @@ ./services/backup/znapzend.nix ./services/blockchain/ethereum/geth.nix ./services/backup/zrepl.nix + ./services/cluster/corosync/default.nix ./services/cluster/hadoop/default.nix ./services/cluster/k3s/default.nix ./services/cluster/kubernetes/addons/dns.nix @@ -314,6 +315,7 @@ ./services/cluster/kubernetes/pki.nix ./services/cluster/kubernetes/proxy.nix ./services/cluster/kubernetes/scheduler.nix + ./services/cluster/pacemaker/default.nix ./services/cluster/spark/default.nix ./services/computing/boinc/client.nix ./services/computing/foldingathome/client.nix diff --git a/nixos/modules/programs/environment.nix b/nixos/modules/programs/environment.nix index d552c751afd..a448727be77 100644 --- a/nixos/modules/programs/environment.nix +++ b/nixos/modules/programs/environment.nix @@ -40,13 +40,15 @@ in KDEDIRS = [ "" ]; QT_PLUGIN_PATH = [ "/lib/qt4/plugins" "/lib/kde4/plugins" ]; QTWEBKIT_PLUGIN_PATH = [ "/lib/mozilla/plugins/" ]; - GTK_PATH = [ "/lib/gtk-2.0" "/lib/gtk-3.0" ]; + GTK_PATH = [ "/lib/gtk-2.0" "/lib/gtk-3.0" "/lib/gtk-4.0" ]; XDG_CONFIG_DIRS = [ "/etc/xdg" ]; XDG_DATA_DIRS = [ "/share" ]; MOZ_PLUGIN_PATH = [ "/lib/mozilla/plugins" ]; LIBEXEC_PATH = [ "/lib/libexec" ]; }; + environment.pathsToLink = [ "/lib/gtk-2.0" "/lib/gtk-3.0" "/lib/gtk-4.0" ]; + environment.extraInit = '' unset ASPELL_CONF diff --git a/nixos/modules/services/cluster/corosync/default.nix b/nixos/modules/services/cluster/corosync/default.nix new file mode 100644 index 00000000000..b4144917fee --- /dev/null +++ b/nixos/modules/services/cluster/corosync/default.nix @@ -0,0 +1,112 @@ +{ config, lib, pkgs, ... }: + +with lib; +let + cfg = config.services.corosync; +in +{ + # interface + options.services.corosync = { + enable = mkEnableOption "corosync"; + + package = mkOption { + type = types.package; + default = pkgs.corosync; + defaultText = literalExpression "pkgs.corosync"; + description = "Package that should be used for corosync."; + }; + + clusterName = mkOption { + type = types.str; + default = "nixcluster"; + description = "Name of the corosync cluster."; + }; + + extraOptions = mkOption { + type = with types; listOf str; + default = []; + description = "Additional options with which to start corosync."; + }; + + nodelist = mkOption { + description = "Corosync nodelist: all cluster members."; + default = []; + type = with types; listOf (submodule { + options = { + nodeid = mkOption { + type = int; + description = "Node ID number"; + }; + name = mkOption { + type = str; + description = "Node name"; + }; + ring_addrs = mkOption { + type = listOf str; + description = "List of addresses, one for each ring."; + }; + }; + }); + }; + }; + + # implementation + config = mkIf cfg.enable { + environment.systemPackages = [ cfg.package ]; + + environment.etc."corosync/corosync.conf".text = '' + totem { + version: 2 + secauth: on + cluster_name: ${cfg.clusterName} + transport: knet + } + + nodelist { + ${concatMapStrings ({ nodeid, name, ring_addrs }: '' + node { + nodeid: ${toString nodeid} + name: ${name} + ${concatStrings (imap0 (i: addr: '' + ring${toString i}_addr: ${addr} + '') ring_addrs)} + } + '') cfg.nodelist} + } + + quorum { + # only corosync_votequorum is supported + provider: corosync_votequorum + wait_for_all: 0 + ${optionalString (builtins.length cfg.nodelist < 3) '' + two_node: 1 + ''} + } + + logging { + to_syslog: yes + } + ''; + + environment.etc."corosync/uidgid.d/root".text = '' + # allow pacemaker connection by root + uidgid { + uid: 0 + gid: 0 + } + ''; + + systemd.packages = [ cfg.package ]; + systemd.services.corosync = { + wantedBy = [ "multi-user.target" ]; + serviceConfig = { + StateDirectory = "corosync"; + StateDirectoryMode = "0700"; + }; + }; + + environment.etc."sysconfig/corosync".text = lib.optionalString (cfg.extraOptions != []) '' + COROSYNC_OPTIONS="${lib.escapeShellArgs cfg.extraOptions}" + ''; + }; +} diff --git a/nixos/modules/services/cluster/hadoop/conf.nix b/nixos/modules/services/cluster/hadoop/conf.nix index 0caec5cfc20..e3c26a0d550 100644 --- a/nixos/modules/services/cluster/hadoop/conf.nix +++ b/nixos/modules/services/cluster/hadoop/conf.nix @@ -1,6 +1,6 @@ { cfg, pkgs, lib }: let - propertyXml = name: value: '' + propertyXml = name: value: lib.optionalString (value != null) '' <property> <name>${name}</name> <value>${builtins.toString value}</value> @@ -29,16 +29,16 @@ let export HADOOP_LOG_DIR=/tmp/hadoop/$USER ''; in -pkgs.runCommand "hadoop-conf" {} '' +pkgs.runCommand "hadoop-conf" {} (with cfg; '' mkdir -p $out/ - cp ${siteXml "core-site.xml" cfg.coreSite}/* $out/ - cp ${siteXml "hdfs-site.xml" cfg.hdfsSite}/* $out/ - cp ${siteXml "mapred-site.xml" cfg.mapredSite}/* $out/ - cp ${siteXml "yarn-site.xml" cfg.yarnSite}/* $out/ - cp ${siteXml "httpfs-site.xml" cfg.httpfsSite}/* $out/ - cp ${cfgFile "container-executor.cfg" cfg.containerExecutorCfg}/* $out/ + cp ${siteXml "core-site.xml" (coreSite // coreSiteInternal)}/* $out/ + cp ${siteXml "hdfs-site.xml" (hdfsSiteDefault // hdfsSite // hdfsSiteInternal)}/* $out/ + cp ${siteXml "mapred-site.xml" (mapredSiteDefault // mapredSite)}/* $out/ + cp ${siteXml "yarn-site.xml" (yarnSiteDefault // yarnSite // yarnSiteInternal)}/* $out/ + cp ${siteXml "httpfs-site.xml" httpfsSite}/* $out/ + cp ${cfgFile "container-executor.cfg" containerExecutorCfg}/* $out/ cp ${pkgs.writeTextDir "hadoop-user-functions.sh" userFunctions}/* $out/ cp ${pkgs.writeTextDir "hadoop-env.sh" hadoopEnv}/* $out/ - cp ${cfg.log4jProperties} $out/log4j.properties - ${lib.concatMapStringsSep "\n" (dir: "cp -r ${dir}/* $out/") cfg.extraConfDirs} -'' + cp ${log4jProperties} $out/log4j.properties + ${lib.concatMapStringsSep "\n" (dir: "cp -r ${dir}/* $out/") extraConfDirs} +'') diff --git a/nixos/modules/services/cluster/hadoop/default.nix b/nixos/modules/services/cluster/hadoop/default.nix index a1a95fe31ca..a4fdea81037 100644 --- a/nixos/modules/services/cluster/hadoop/default.nix +++ b/nixos/modules/services/cluster/hadoop/default.nix @@ -21,24 +21,50 @@ with lib; <link xlink:href="https://hadoop.apache.org/docs/current/hadoop-project-dist/hadoop-common/core-default.xml"/> ''; }; + coreSiteInternal = mkOption { + default = {}; + type = types.attrsOf types.anything; + internal = true; + description = '' + Internal option to add configs to core-site.xml based on module options + ''; + }; - hdfsSite = mkOption { + hdfsSiteDefault = mkOption { default = { "dfs.namenode.rpc-bind-host" = "0.0.0.0"; + "dfs.namenode.http-address" = "0.0.0.0:9870"; + "dfs.namenode.servicerpc-bind-host" = "0.0.0.0"; + "dfs.namenode.http-bind-host" = "0.0.0.0"; }; type = types.attrsOf types.anything; + description = '' + Default options for hdfs-site.xml + ''; + }; + hdfsSite = mkOption { + default = {}; + type = types.attrsOf types.anything; example = literalExpression '' { "dfs.nameservices" = "namenode1"; } ''; description = '' - Hadoop hdfs-site.xml definition + Additional options and overrides for hdfs-site.xml <link xlink:href="https://hadoop.apache.org/docs/current/hadoop-project-dist/hadoop-hdfs/hdfs-default.xml"/> ''; }; + hdfsSiteInternal = mkOption { + default = {}; + type = types.attrsOf types.anything; + internal = true; + description = '' + Internal option to add configs to hdfs-site.xml based on module options + ''; + }; - mapredSite = mkOption { + mapredSiteDefault = mkOption { default = { "mapreduce.framework.name" = "yarn"; "yarn.app.mapreduce.am.env" = "HADOOP_MAPRED_HOME=${cfg.package}/lib/${cfg.package.untarDir}"; @@ -54,18 +80,25 @@ with lib; } ''; type = types.attrsOf types.anything; + description = '' + Default options for mapred-site.xml + ''; + }; + mapredSite = mkOption { + default = {}; + type = types.attrsOf types.anything; example = literalExpression '' - options.services.hadoop.mapredSite.default // { + { "mapreduce.map.java.opts" = "-Xmx900m -XX:+UseParallelGC"; } ''; description = '' - Hadoop mapred-site.xml definition + Additional options and overrides for mapred-site.xml <link xlink:href="https://hadoop.apache.org/docs/current/hadoop-mapreduce-client/hadoop-mapreduce-client-core/mapred-default.xml"/> ''; }; - yarnSite = mkOption { + yarnSiteDefault = mkOption { default = { "yarn.nodemanager.admin-env" = "PATH=$PATH"; "yarn.nodemanager.aux-services" = "mapreduce_shuffle"; @@ -77,19 +110,34 @@ with lib; "yarn.nodemanager.linux-container-executor.path" = "/run/wrappers/yarn-nodemanager/bin/container-executor"; "yarn.nodemanager.log-dirs" = "/var/log/hadoop/yarn/nodemanager"; "yarn.resourcemanager.bind-host" = "0.0.0.0"; - "yarn.resourcemanager.scheduler.class" = "org.apache.hadoop.yarn.server.resourcemanager.scheduler.fifo.FifoScheduler"; + "yarn.resourcemanager.scheduler.class" = "org.apache.hadoop.yarn.server.resourcemanager.scheduler.fair.FairScheduler"; }; type = types.attrsOf types.anything; + description = '' + Default options for yarn-site.xml + ''; + }; + yarnSite = mkOption { + default = {}; + type = types.attrsOf types.anything; example = literalExpression '' - options.services.hadoop.yarnSite.default // { + { "yarn.resourcemanager.hostname" = "''${config.networking.hostName}"; } ''; description = '' - Hadoop yarn-site.xml definition + Additional options and overrides for yarn-site.xml <link xlink:href="https://hadoop.apache.org/docs/current/hadoop-yarn/hadoop-yarn-common/yarn-default.xml"/> ''; }; + yarnSiteInternal = mkOption { + default = {}; + type = types.attrsOf types.anything; + internal = true; + description = '' + Internal option to add configs to yarn-site.xml based on module options + ''; + }; httpfsSite = mkOption { default = { }; @@ -123,6 +171,7 @@ with lib; "yarn.nodemanager.linux-container-executor.group"="hadoop"; "min.user.id"=1000; "feature.terminal.enabled"=1; + "feature.mount-cgroup.enabled" = 1; }; type = types.attrsOf types.anything; example = literalExpression '' @@ -148,6 +197,8 @@ with lib; description = "Directories containing additional config files to be added to HADOOP_CONF_DIR"; }; + gatewayRole.enable = mkEnableOption "gateway role for deploying hadoop configs"; + package = mkOption { type = types.package; default = pkgs.hadoop; @@ -157,20 +208,16 @@ with lib; }; - config = mkMerge [ - (mkIf (builtins.hasAttr "yarn" config.users.users || - builtins.hasAttr "hdfs" config.users.users || - builtins.hasAttr "httpfs" config.users.users) { - users.groups.hadoop = { - gid = config.ids.gids.hadoop; - }; - environment = { - systemPackages = [ cfg.package ]; - etc."hadoop-conf".source = let - hadoopConf = "${import ./conf.nix { inherit cfg pkgs lib; }}/"; - in "${hadoopConf}"; - }; - }) - - ]; + config = mkIf cfg.gatewayRole.enable { + users.groups.hadoop = { + gid = config.ids.gids.hadoop; + }; + environment = { + systemPackages = [ cfg.package ]; + etc."hadoop-conf".source = let + hadoopConf = "${import ./conf.nix { inherit cfg pkgs lib; }}/"; + in "${hadoopConf}"; + variables.HADOOP_CONF_DIR = "/etc/hadoop-conf/"; + }; + }; } diff --git a/nixos/modules/services/cluster/hadoop/hdfs.nix b/nixos/modules/services/cluster/hadoop/hdfs.nix index be667aa82d8..325a002ad32 100644 --- a/nixos/modules/services/cluster/hadoop/hdfs.nix +++ b/nixos/modules/services/cluster/hadoop/hdfs.nix @@ -1,191 +1,191 @@ -{ config, lib, pkgs, ...}: +{ config, lib, pkgs, ... }: with lib; let cfg = config.services.hadoop; + + # Config files for hadoop services hadoopConf = "${import ./conf.nix { inherit cfg pkgs lib; }}/"; - restartIfChanged = mkOption { - type = types.bool; - description = '' - Automatically restart the service on config change. - This can be set to false to defer restarts on clusters running critical applications. - Please consider the security implications of inadvertently running an older version, - and the possibility of unexpected behavior caused by inconsistent versions across a cluster when disabling this option. - ''; - default = false; - }; + + # Generator for HDFS service options + hadoopServiceOption = { serviceName, firewallOption ? true, extraOpts ? null }: { + enable = mkEnableOption serviceName; + restartIfChanged = mkOption { + type = types.bool; + description = '' + Automatically restart the service on config change. + This can be set to false to defer restarts on clusters running critical applications. + Please consider the security implications of inadvertently running an older version, + and the possibility of unexpected behavior caused by inconsistent versions across a cluster when disabling this option. + ''; + default = false; + }; + extraFlags = mkOption{ + type = with types; listOf str; + default = []; + description = "Extra command line flags to pass to ${serviceName}"; + example = [ + "-Dcom.sun.management.jmxremote" + "-Dcom.sun.management.jmxremote.port=8010" + ]; + }; + extraEnv = mkOption{ + type = with types; attrsOf str; + default = {}; + description = "Extra environment variables for ${serviceName}"; + }; + } // (optionalAttrs firewallOption { + openFirewall = mkOption { + type = types.bool; + default = false; + description = "Open firewall ports for ${serviceName}."; + }; + }) // (optionalAttrs (extraOpts != null) extraOpts); + + # Generator for HDFS service configs + hadoopServiceConfig = + { name + , serviceOptions ? cfg.hdfs."${toLower name}" + , description ? "Hadoop HDFS ${name}" + , User ? "hdfs" + , allowedTCPPorts ? [ ] + , preStart ? "" + , environment ? { } + , extraConfig ? { } + }: ( + + mkIf serviceOptions.enable ( mkMerge [{ + systemd.services."hdfs-${toLower name}" = { + inherit description preStart; + environment = environment // serviceOptions.extraEnv; + wantedBy = [ "multi-user.target" ]; + inherit (serviceOptions) restartIfChanged; + serviceConfig = { + inherit User; + SyslogIdentifier = "hdfs-${toLower name}"; + ExecStart = "${cfg.package}/bin/hdfs --config ${hadoopConf} ${toLower name} ${escapeShellArgs serviceOptions.extraFlags}"; + Restart = "always"; + }; + }; + + services.hadoop.gatewayRole.enable = true; + + networking.firewall.allowedTCPPorts = mkIf + ((builtins.hasAttr "openFirewall" serviceOptions) && serviceOptions.openFirewall) + allowedTCPPorts; + } extraConfig]) + ); + in { options.services.hadoop.hdfs = { - namenode = { - enable = mkEnableOption "Whether to run the HDFS NameNode"; + + namenode = hadoopServiceOption { serviceName = "HDFS NameNode"; } // { formatOnInit = mkOption { type = types.bool; default = false; description = '' - Format HDFS namenode on first start. This is useful for quickly spinning up ephemeral HDFS clusters with a single namenode. - For HA clusters, initialization involves multiple steps across multiple nodes. Follow [this guide](https://hadoop.apache.org/docs/stable/hadoop-project-dist/hadoop-hdfs/HDFSHighAvailabilityWithQJM.html) - to initialize an HA cluster manually. - ''; - }; - inherit restartIfChanged; - openFirewall = mkOption { - type = types.bool; - default = true; - description = '' - Open firewall ports for namenode - ''; - }; - }; - datanode = { - enable = mkEnableOption "Whether to run the HDFS DataNode"; - inherit restartIfChanged; - openFirewall = mkOption { - type = types.bool; - default = true; - description = '' - Open firewall ports for datanode + Format HDFS namenode on first start. This is useful for quickly spinning up + ephemeral HDFS clusters with a single namenode. + For HA clusters, initialization involves multiple steps across multiple nodes. + Follow this guide to initialize an HA cluster manually: + <link xlink:href="https://hadoop.apache.org/docs/stable/hadoop-project-dist/hadoop-hdfs/HDFSHighAvailabilityWithQJM.html"/> ''; }; }; - journalnode = { - enable = mkEnableOption "Whether to run the HDFS JournalNode"; - inherit restartIfChanged; - openFirewall = mkOption { - type = types.bool; - default = true; - description = '' - Open firewall ports for journalnode - ''; + + datanode = hadoopServiceOption { serviceName = "HDFS DataNode"; } // { + dataDirs = mkOption { + default = null; + description = "Tier and path definitions for datanode storage."; + type = with types; nullOr (listOf (submodule { + options = { + type = mkOption { + type = enum [ "SSD" "DISK" "ARCHIVE" "RAM_DISK" ]; + description = '' + Storage types ([SSD]/[DISK]/[ARCHIVE]/[RAM_DISK]) for HDFS storage policies. + ''; + }; + path = mkOption { + type = path; + example = [ "/var/lib/hadoop/hdfs/dn" ]; + description = "Determines where on the local filesystem a data node should store its blocks."; + }; + }; + })); }; }; - zkfc = { - enable = mkEnableOption "Whether to run the HDFS ZooKeeper failover controller"; - inherit restartIfChanged; + + journalnode = hadoopServiceOption { serviceName = "HDFS JournalNode"; }; + + zkfc = hadoopServiceOption { + serviceName = "HDFS ZooKeeper failover controller"; + firewallOption = false; }; - httpfs = { - enable = mkEnableOption "Whether to run the HDFS HTTPfs server"; + + httpfs = hadoopServiceOption { serviceName = "HDFS JournalNode"; } // { tempPath = mkOption { type = types.path; default = "/tmp/hadoop/httpfs"; - description = '' - HTTPFS_TEMP path used by HTTPFS - ''; - }; - inherit restartIfChanged; - openFirewall = mkOption { - type = types.bool; - default = true; - description = '' - Open firewall ports for HTTPFS - ''; + description = "HTTPFS_TEMP path used by HTTPFS"; }; }; + }; config = mkMerge [ - (mkIf cfg.hdfs.namenode.enable { - systemd.services.hdfs-namenode = { - description = "Hadoop HDFS NameNode"; - wantedBy = [ "multi-user.target" ]; - inherit (cfg.hdfs.namenode) restartIfChanged; - - preStart = (mkIf cfg.hdfs.namenode.formatOnInit '' - ${cfg.package}/bin/hdfs --config ${hadoopConf} namenode -format -nonInteractive || true - ''); - - serviceConfig = { - User = "hdfs"; - SyslogIdentifier = "hdfs-namenode"; - ExecStart = "${cfg.package}/bin/hdfs --config ${hadoopConf} namenode"; - Restart = "always"; - }; - }; - - networking.firewall.allowedTCPPorts = (mkIf cfg.hdfs.namenode.openFirewall [ + (hadoopServiceConfig { + name = "NameNode"; + allowedTCPPorts = [ 9870 # namenode.http-address 8020 # namenode.rpc-address - 8022 # namenode. servicerpc-address - ]); + 8022 # namenode.servicerpc-address + 8019 # dfs.ha.zkfc.port + ]; + preStart = (mkIf cfg.hdfs.namenode.formatOnInit + "${cfg.package}/bin/hdfs --config ${hadoopConf} namenode -format -nonInteractive || true" + ); }) - (mkIf cfg.hdfs.datanode.enable { - systemd.services.hdfs-datanode = { - description = "Hadoop HDFS DataNode"; - wantedBy = [ "multi-user.target" ]; - inherit (cfg.hdfs.datanode) restartIfChanged; - - serviceConfig = { - User = "hdfs"; - SyslogIdentifier = "hdfs-datanode"; - ExecStart = "${cfg.package}/bin/hdfs --config ${hadoopConf} datanode"; - Restart = "always"; - }; - }; - networking.firewall.allowedTCPPorts = (mkIf cfg.hdfs.datanode.openFirewall [ + (hadoopServiceConfig { + name = "DataNode"; + # port numbers for datanode changed between hadoop 2 and 3 + allowedTCPPorts = if versionAtLeast cfg.package.version "3" then [ 9864 # datanode.http.address 9866 # datanode.address 9867 # datanode.ipc.address - ]); + ] else [ + 50075 # datanode.http.address + 50010 # datanode.address + 50020 # datanode.ipc.address + ]; + extraConfig.services.hadoop.hdfsSiteInternal."dfs.datanode.data.dir" = let d = cfg.hdfs.datanode.dataDirs; in + if (d!= null) then (concatMapStringsSep "," (x: "["+x.type+"]file://"+x.path) cfg.hdfs.datanode.dataDirs) else d; }) - (mkIf cfg.hdfs.journalnode.enable { - systemd.services.hdfs-journalnode = { - description = "Hadoop HDFS JournalNode"; - wantedBy = [ "multi-user.target" ]; - inherit (cfg.hdfs.journalnode) restartIfChanged; - - serviceConfig = { - User = "hdfs"; - SyslogIdentifier = "hdfs-journalnode"; - ExecStart = "${cfg.package}/bin/hdfs --config ${hadoopConf} journalnode"; - Restart = "always"; - }; - }; - networking.firewall.allowedTCPPorts = (mkIf cfg.hdfs.journalnode.openFirewall [ + (hadoopServiceConfig { + name = "JournalNode"; + allowedTCPPorts = [ 8480 # dfs.journalnode.http-address 8485 # dfs.journalnode.rpc-address - ]); + ]; }) - (mkIf cfg.hdfs.zkfc.enable { - systemd.services.hdfs-zkfc = { - description = "Hadoop HDFS ZooKeeper failover controller"; - wantedBy = [ "multi-user.target" ]; - inherit (cfg.hdfs.zkfc) restartIfChanged; - - serviceConfig = { - User = "hdfs"; - SyslogIdentifier = "hdfs-zkfc"; - ExecStart = "${cfg.package}/bin/hdfs --config ${hadoopConf} zkfc"; - Restart = "always"; - }; - }; - }) - (mkIf cfg.hdfs.httpfs.enable { - systemd.services.hdfs-httpfs = { - description = "Hadoop httpfs"; - wantedBy = [ "multi-user.target" ]; - inherit (cfg.hdfs.httpfs) restartIfChanged; - - environment.HTTPFS_TEMP = cfg.hdfs.httpfs.tempPath; - preStart = '' - mkdir -p $HTTPFS_TEMP - ''; + (hadoopServiceConfig { + name = "zkfc"; + description = "Hadoop HDFS ZooKeeper failover controller"; + }) - serviceConfig = { - User = "httpfs"; - SyslogIdentifier = "hdfs-httpfs"; - ExecStart = "${cfg.package}/bin/hdfs --config ${hadoopConf} httpfs"; - Restart = "always"; - }; - }; - networking.firewall.allowedTCPPorts = (mkIf cfg.hdfs.httpfs.openFirewall [ + (hadoopServiceConfig { + name = "HTTPFS"; + environment.HTTPFS_TEMP = cfg.hdfs.httpfs.tempPath; + preStart = "mkdir -p $HTTPFS_TEMP"; + User = "httpfs"; + allowedTCPPorts = [ 14000 # httpfs.http.port - ]); + ]; }) - (mkIf ( - cfg.hdfs.namenode.enable || cfg.hdfs.datanode.enable || cfg.hdfs.journalnode.enable || cfg.hdfs.zkfc.enable - ) { + + (mkIf cfg.gatewayRole.enable { users.users.hdfs = { description = "Hadoop HDFS user"; group = "hadoop"; @@ -199,5 +199,6 @@ in isSystemUser = true; }; }) + ]; } diff --git a/nixos/modules/services/cluster/hadoop/yarn.nix b/nixos/modules/services/cluster/hadoop/yarn.nix index 37c26ea10f7..74e16bdec68 100644 --- a/nixos/modules/services/cluster/hadoop/yarn.nix +++ b/nixos/modules/services/cluster/hadoop/yarn.nix @@ -13,23 +13,77 @@ let ''; default = false; }; + extraFlags = mkOption{ + type = with types; listOf str; + default = []; + description = "Extra command line flags to pass to the service"; + example = [ + "-Dcom.sun.management.jmxremote" + "-Dcom.sun.management.jmxremote.port=8010" + ]; + }; + extraEnv = mkOption{ + type = with types; attrsOf str; + default = {}; + description = "Extra environment variables"; + }; in { options.services.hadoop.yarn = { resourcemanager = { - enable = mkEnableOption "Whether to run the Hadoop YARN ResourceManager"; - inherit restartIfChanged; + enable = mkEnableOption "Hadoop YARN ResourceManager"; + inherit restartIfChanged extraFlags extraEnv; + openFirewall = mkOption { type = types.bool; - default = true; + default = false; description = '' Open firewall ports for resourcemanager ''; }; }; nodemanager = { - enable = mkEnableOption "Whether to run the Hadoop YARN NodeManager"; - inherit restartIfChanged; + enable = mkEnableOption "Hadoop YARN NodeManager"; + inherit restartIfChanged extraFlags extraEnv; + + resource = { + cpuVCores = mkOption { + description = "Number of vcores that can be allocated for containers."; + type = with types; nullOr ints.positive; + default = null; + }; + maximumAllocationVCores = mkOption { + description = "The maximum virtual CPU cores any container can be allocated."; + type = with types; nullOr ints.positive; + default = null; + }; + memoryMB = mkOption { + description = "Amount of physical memory, in MB, that can be allocated for containers."; + type = with types; nullOr ints.positive; + default = null; + }; + maximumAllocationMB = mkOption { + description = "The maximum physical memory any container can be allocated."; + type = with types; nullOr ints.positive; + default = null; + }; + }; + + useCGroups = mkOption { + type = types.bool; + default = true; + description = '' + Use cgroups to enforce resource limits on containers + ''; + }; + + localDir = mkOption { + description = "List of directories to store localized files in."; + type = with types; nullOr (listOf path); + example = [ "/var/lib/hadoop/yarn/nm" ]; + default = null; + }; + addBinBash = mkOption { type = types.bool; default = true; @@ -39,7 +93,7 @@ in }; openFirewall = mkOption { type = types.bool; - default = true; + default = false; description = '' Open firewall ports for nodemanager. Because containers can listen on any ephemeral port, TCP ports 1024–65535 will be opened. @@ -49,10 +103,7 @@ in }; config = mkMerge [ - (mkIf ( - cfg.yarn.resourcemanager.enable || cfg.yarn.nodemanager.enable - ) { - + (mkIf cfg.gatewayRole.enable { users.users.yarn = { description = "Hadoop YARN user"; group = "hadoop"; @@ -65,15 +116,19 @@ in description = "Hadoop YARN ResourceManager"; wantedBy = [ "multi-user.target" ]; inherit (cfg.yarn.resourcemanager) restartIfChanged; + environment = cfg.yarn.resourcemanager.extraEnv; serviceConfig = { User = "yarn"; SyslogIdentifier = "yarn-resourcemanager"; ExecStart = "${cfg.package}/bin/yarn --config ${hadoopConf} " + - " resourcemanager"; + " resourcemanager ${escapeShellArgs cfg.yarn.resourcemanager.extraFlags}"; Restart = "always"; }; }; + + services.hadoop.gatewayRole.enable = true; + networking.firewall.allowedTCPPorts = (mkIf cfg.yarn.resourcemanager.openFirewall [ 8088 # resourcemanager.webapp.address 8030 # resourcemanager.scheduler.address @@ -94,6 +149,7 @@ in description = "Hadoop YARN NodeManager"; wantedBy = [ "multi-user.target" ]; inherit (cfg.yarn.nodemanager) restartIfChanged; + environment = cfg.yarn.nodemanager.extraEnv; preStart = '' # create log dir @@ -101,8 +157,9 @@ in chown yarn:hadoop /var/log/hadoop/yarn/nodemanager # set up setuid container executor binary + umount /run/wrappers/yarn-nodemanager/cgroup/cpu || true rm -rf /run/wrappers/yarn-nodemanager/ || true - mkdir -p /run/wrappers/yarn-nodemanager/{bin,etc/hadoop} + mkdir -p /run/wrappers/yarn-nodemanager/{bin,etc/hadoop,cgroup/cpu} cp ${cfg.package}/lib/${cfg.package.untarDir}/bin/container-executor /run/wrappers/yarn-nodemanager/bin/ chgrp hadoop /run/wrappers/yarn-nodemanager/bin/container-executor chmod 6050 /run/wrappers/yarn-nodemanager/bin/container-executor @@ -114,11 +171,26 @@ in SyslogIdentifier = "yarn-nodemanager"; PermissionsStartOnly = true; ExecStart = "${cfg.package}/bin/yarn --config ${hadoopConf} " + - " nodemanager"; + " nodemanager ${escapeShellArgs cfg.yarn.nodemanager.extraFlags}"; Restart = "always"; }; }; + services.hadoop.gatewayRole.enable = true; + + services.hadoop.yarnSiteInternal = with cfg.yarn.nodemanager; { + "yarn.nodemanager.local-dirs" = localDir; + "yarn.scheduler.maximum-allocation-vcores" = resource.maximumAllocationVCores; + "yarn.scheduler.maximum-allocation-mb" = resource.maximumAllocationMB; + "yarn.nodemanager.resource.cpu-vcores" = resource.cpuVCores; + "yarn.nodemanager.resource.memory-mb" = resource.memoryMB; + } // mkIf useCGroups { + "yarn.nodemanager.linux-container-executor.cgroups.hierarchy" = "/hadoop-yarn"; + "yarn.nodemanager.linux-container-executor.resources-handler.class" = "org.apache.hadoop.yarn.server.nodemanager.util.CgroupsLCEResourcesHandler"; + "yarn.nodemanager.linux-container-executor.cgroups.mount" = "true"; + "yarn.nodemanager.linux-container-executor.cgroups.mount-path" = "/run/wrappers/yarn-nodemanager/cgroup"; + }; + networking.firewall.allowedTCPPortRanges = [ (mkIf (cfg.yarn.nodemanager.openFirewall) {from = 1024; to = 65535;}) ]; diff --git a/nixos/modules/services/cluster/pacemaker/default.nix b/nixos/modules/services/cluster/pacemaker/default.nix new file mode 100644 index 00000000000..7eeadffcc58 --- /dev/null +++ b/nixos/modules/services/cluster/pacemaker/default.nix @@ -0,0 +1,52 @@ +{ config, lib, pkgs, ... }: + +with lib; +let + cfg = config.services.pacemaker; +in +{ + # interface + options.services.pacemaker = { + enable = mkEnableOption "pacemaker"; + + package = mkOption { + type = types.package; + default = pkgs.pacemaker; + defaultText = literalExpression "pkgs.pacemaker"; + description = "Package that should be used for pacemaker."; + }; + }; + + # implementation + config = mkIf cfg.enable { + assertions = [ { + assertion = config.services.corosync.enable; + message = '' + Enabling services.pacemaker requires a services.corosync configuration. + ''; + } ]; + + environment.systemPackages = [ cfg.package ]; + + # required by pacemaker + users.users.hacluster = { + isSystemUser = true; + group = "pacemaker"; + home = "/var/lib/pacemaker"; + }; + users.groups.pacemaker = {}; + + systemd.tmpfiles.rules = [ + "d /var/log/pacemaker 0700 hacluster pacemaker -" + ]; + + systemd.packages = [ cfg.package ]; + systemd.services.pacemaker = { + wantedBy = [ "multi-user.target" ]; + serviceConfig = { + StateDirectory = "pacemaker"; + StateDirectoryMode = "0700"; + }; + }; + }; +} diff --git a/nixos/modules/services/matrix/matrix-synapse.xml b/nixos/modules/services/matrix/matrix-synapse.xml index cdc4b4de1a7..cf33957d58e 100644 --- a/nixos/modules/services/matrix/matrix-synapse.xml +++ b/nixos/modules/services/matrix/matrix-synapse.xml @@ -119,7 +119,7 @@ in { <link linkend="opt-services.matrix-synapse.settings.listeners">listeners</link> = [ { <link linkend="opt-services.matrix-synapse.settings.listeners._.port">port</link> = 8008; - <link linkend="opt-services.matrix-synapse.settings.listeners._.bind_addresses">bind_address</link> = [ "::1" ]; + <link linkend="opt-services.matrix-synapse.settings.listeners._.bind_addresses">bind_addresses</link> = [ "::1" ]; <link linkend="opt-services.matrix-synapse.settings.listeners._.type">type</link> = "http"; <link linkend="opt-services.matrix-synapse.settings.listeners._.tls">tls</link> = false; <link linkend="opt-services.matrix-synapse.settings.listeners._.x_forwarded">x_forwarded</link> = true; @@ -152,10 +152,10 @@ in { <para> If you want to run a server with public registration by anybody, you can - then enable <literal><link linkend="opt-services.matrix-synapse.settings.enable_registration">services.matrix-synapse.enable_registration</link> = + then enable <literal><link linkend="opt-services.matrix-synapse.settings.enable_registration">services.matrix-synapse.settings.enable_registration</link> = true;</literal>. Otherwise, or you can generate a registration secret with <command>pwgen -s 64 1</command> and set it with - <option><link linkend="opt-services.matrix-synapse.settings.registration_shared_secret">services.matrix-synapse.registration_shared_secret</link></option>. + <option><link linkend="opt-services.matrix-synapse.settings.registration_shared_secret">services.matrix-synapse.settings.registration_shared_secret</link></option>. To create a new user or admin, run the following after you have set the secret and have rebuilt NixOS: <screen> diff --git a/nixos/modules/services/misc/paperless-ng.nix b/nixos/modules/services/misc/paperless-ng.nix index 44efc234a2b..11e44f5ece5 100644 --- a/nixos/modules/services/misc/paperless-ng.nix +++ b/nixos/modules/services/misc/paperless-ng.nix @@ -214,6 +214,8 @@ in User = cfg.user; ExecStart = "${cfg.package}/bin/paperless-ng qcluster"; Restart = "on-failure"; + # The `mbind` syscall is needed for running the classifier. + SystemCallFilter = defaultServiceConfig.SystemCallFilter ++ [ "mbind" ]; }; environment = env; wantedBy = [ "multi-user.target" ]; diff --git a/nixos/modules/services/networking/nsd.nix b/nixos/modules/services/networking/nsd.nix index cf6c9661dc1..a51fc534534 100644 --- a/nixos/modules/services/networking/nsd.nix +++ b/nixos/modules/services/networking/nsd.nix @@ -194,19 +194,8 @@ let zone.children ); - # fighting infinite recursion - zoneOptions = zoneOptionsRaw // childConfig zoneOptions1 true; - zoneOptions1 = zoneOptionsRaw // childConfig zoneOptions2 false; - zoneOptions2 = zoneOptionsRaw // childConfig zoneOptions3 false; - zoneOptions3 = zoneOptionsRaw // childConfig zoneOptions4 false; - zoneOptions4 = zoneOptionsRaw // childConfig zoneOptions5 false; - zoneOptions5 = zoneOptionsRaw // childConfig zoneOptions6 false; - zoneOptions6 = zoneOptionsRaw // childConfig null false; - - childConfig = x: v: { options.children = { type = types.attrsOf x; visible = v; }; }; - # options are ordered alphanumerically - zoneOptionsRaw = types.submodule { + zoneOptions = types.submodule { options = { allowAXFRFallback = mkOption { @@ -246,6 +235,13 @@ let }; children = mkOption { + # TODO: This relies on the fact that `types.anything` doesn't set any + # values of its own to any defaults, because in the above zoneConfigs', + # values from children override ones from parents, but only if the + # attributes are defined. Because of this, we can't replace the element + # type here with `zoneConfigs`, since that would set all the attributes + # to default values, breaking the parent inheriting function. + type = types.attrsOf types.anything; default = {}; description = '' Children zones inherit all options of their parents. Attributes diff --git a/nixos/modules/services/networking/pleroma.nix b/nixos/modules/services/networking/pleroma.nix index 9b8382392c0..c6d4c14dcb7 100644 --- a/nixos/modules/services/networking/pleroma.nix +++ b/nixos/modules/services/networking/pleroma.nix @@ -1,6 +1,7 @@ { config, options, lib, pkgs, stdenv, ... }: let cfg = config.services.pleroma; + cookieFile = "/var/lib/pleroma/.cookie"; in { options = { services.pleroma = with lib; { @@ -8,7 +9,7 @@ in { package = mkOption { type = types.package; - default = pkgs.pleroma; + default = pkgs.pleroma.override { inherit cookieFile; }; defaultText = literalExpression "pkgs.pleroma"; description = "Pleroma package to use."; }; @@ -100,7 +101,6 @@ in { after = [ "network-online.target" "postgresql.service" ]; wantedBy = [ "multi-user.target" ]; restartTriggers = [ config.environment.etc."/pleroma/config.exs".source ]; - environment.RELEASE_COOKIE = "/var/lib/pleroma/.cookie"; serviceConfig = { User = cfg.user; Group = cfg.group; @@ -118,10 +118,10 @@ in { # Better be safe than sorry migration-wise. ExecStartPre = let preScript = pkgs.writers.writeBashBin "pleromaStartPre" '' - if [ ! -f /var/lib/pleroma/.cookie ] + if [ ! -f "${cookieFile}" ] || [ ! -s "${cookieFile}" ] then echo "Creating cookie file" - dd if=/dev/urandom bs=1 count=16 | hexdump -e '16/1 "%02x"' > /var/lib/pleroma/.cookie + dd if=/dev/urandom bs=1 count=16 | ${pkgs.hexdump}/bin/hexdump -e '16/1 "%02x"' > "${cookieFile}" fi ${cfg.package}/bin/pleroma_ctl migrate ''; diff --git a/nixos/modules/services/networking/unbound.nix b/nixos/modules/services/networking/unbound.nix index f6e96349092..87873c8c1e8 100644 --- a/nixos/modules/services/networking/unbound.nix +++ b/nixos/modules/services/networking/unbound.nix @@ -62,6 +62,7 @@ in { }; stateDir = mkOption { + type = types.path; default = "/var/lib/unbound"; description = "Directory holding all state for unbound to run."; }; diff --git a/nixos/modules/services/networking/vsftpd.nix b/nixos/modules/services/networking/vsftpd.nix index 710c2d9ca17..d205302051e 100644 --- a/nixos/modules/services/networking/vsftpd.nix +++ b/nixos/modules/services/networking/vsftpd.nix @@ -153,6 +153,7 @@ in userlist = mkOption { default = []; + type = types.listOf types.str; description = "See <option>userlistFile</option>."; }; diff --git a/nixos/modules/services/security/oauth2_proxy.nix b/nixos/modules/services/security/oauth2_proxy.nix index 4d356242417..ce295bd4ba3 100644 --- a/nixos/modules/services/security/oauth2_proxy.nix +++ b/nixos/modules/services/security/oauth2_proxy.nix @@ -102,17 +102,19 @@ in # Taken from: https://github.com/oauth2-proxy/oauth2-proxy/blob/master/providers/providers.go provider = mkOption { type = types.enum [ - "google" + "adfs" "azure" + "bitbucket" + "digitalocean" "facebook" "github" - "keycloak" "gitlab" + "google" + "keycloak" + "keycloak-oidc" "linkedin" "login.gov" - "bitbucket" "nextcloud" - "digitalocean" "oidc" ]; default = "google"; diff --git a/nixos/modules/services/security/tor.nix b/nixos/modules/services/security/tor.nix index 3bf70c4aa4f..ddd216ca7fd 100644 --- a/nixos/modules/services/security/tor.nix +++ b/nixos/modules/services/security/tor.nix @@ -1008,7 +1008,11 @@ in #InaccessiblePaths = [ "-+${runDir}/root" ]; UMask = "0066"; BindPaths = [ stateDir ]; - BindReadOnlyPaths = [ storeDir "/etc" ]; + BindReadOnlyPaths = [ storeDir "/etc" ] ++ + optionals config.services.resolved.enable [ + "/run/systemd/resolve/stub-resolv.conf" + "/run/systemd/resolve/resolv.conf" + ]; AmbientCapabilities = [""] ++ lib.optional bindsPrivilegedPort "CAP_NET_BIND_SERVICE"; CapabilityBoundingSet = [""] ++ lib.optional bindsPrivilegedPort "CAP_NET_BIND_SERVICE"; # ProtectClock= adds DeviceAllow=char-rtc r diff --git a/nixos/modules/services/web-apps/nextcloud.nix b/nixos/modules/services/web-apps/nextcloud.nix index 141ab98e29b..b32220a5e57 100644 --- a/nixos/modules/services/web-apps/nextcloud.nix +++ b/nixos/modules/services/web-apps/nextcloud.nix @@ -153,7 +153,7 @@ in { package = mkOption { type = types.package; description = "Which package to use for the Nextcloud instance."; - relatedPackages = [ "nextcloud21" "nextcloud22" "nextcloud23" ]; + relatedPackages = [ "nextcloud22" "nextcloud23" ]; }; phpPackage = mkOption { type = types.package; @@ -571,15 +571,6 @@ in { nextcloud defined in an overlay, please set `services.nextcloud.package` to `pkgs.nextcloud`. '' - # 21.03 will not be an official release - it was instead 21.05. - # This versionOlder statement remains set to 21.03 for backwards compatibility. - # See https://github.com/NixOS/nixpkgs/pull/108899 and - # https://github.com/NixOS/rfcs/blob/master/rfcs/0080-nixos-release-schedule.md. - # FIXME(@Ma27) remove this else-if as soon as 21.05 is EOL! This is only here - # to ensure that users who are on Nextcloud 19 with a stateVersion <21.05 with - # no explicit services.nextcloud.package don't upgrade to v21 by accident ( - # nextcloud20 throws an eval-error because it's dropped). - else if versionOlder stateVersion "21.03" then nextcloud20 else if versionOlder stateVersion "21.11" then nextcloud21 else if versionOlder stateVersion "22.05" then nextcloud22 else nextcloud23 diff --git a/nixos/modules/services/x11/display-managers/default.nix b/nixos/modules/services/x11/display-managers/default.nix index 92b3af8527f..a5db3dd5dd4 100644 --- a/nixos/modules/services/x11/display-managers/default.nix +++ b/nixos/modules/services/x11/display-managers/default.nix @@ -219,6 +219,7 @@ in session = mkOption { default = []; + type = types.listOf types.attrs; example = literalExpression '' [ { manage = "desktop"; diff --git a/nixos/modules/system/boot/kernel.nix b/nixos/modules/system/boot/kernel.nix index d147155d796..db00244ca0a 100644 --- a/nixos/modules/system/boot/kernel.nix +++ b/nixos/modules/system/boot/kernel.nix @@ -36,7 +36,7 @@ in boot.kernelPackages = mkOption { default = pkgs.linuxPackages; - type = types.unspecified // { merge = mergeEqualOption; }; + type = types.raw; apply = kernelPackages: kernelPackages.extend (self: super: { kernel = super.kernel.override (originalArgs: { inherit randstructSeed; diff --git a/nixos/modules/system/boot/modprobe.nix b/nixos/modules/system/boot/modprobe.nix index 27f78835adb..e683d181729 100644 --- a/nixos/modules/system/boot/modprobe.nix +++ b/nixos/modules/system/boot/modprobe.nix @@ -34,23 +34,6 @@ with lib; type = types.lines; }; - boot.initrd.extraModprobeConfig = mkOption { - default = ""; - example = - '' - options zfs zfs_arc_max=1073741824 - ''; - description = '' - Does exactly the same thing as - <option>boot.extraModprobeConfig</option>, except - that the generated <filename>modprobe.conf</filename> - file is also included in the initrd. - This is useful for setting module options for kernel - modules that are loaded during early boot in the initrd. - ''; - type = types.lines; - }; - }; @@ -67,9 +50,6 @@ with lib; '')} ${config.boot.extraModprobeConfig} ''; - environment.etc."modprobe.d/nixos-initrd.conf".text = '' - ${config.boot.initrd.extraModprobeConfig} - ''; environment.etc."modprobe.d/debian.conf".source = pkgs.kmod-debian-aliases; environment.etc."modprobe.d/systemd.conf".source = "${pkgs.systemd}/lib/modprobe.d/systemd.conf"; diff --git a/nixos/modules/system/boot/stage-1.nix b/nixos/modules/system/boot/stage-1.nix index 1575c0257d1..8b011d91563 100644 --- a/nixos/modules/system/boot/stage-1.nix +++ b/nixos/modules/system/boot/stage-1.nix @@ -338,9 +338,6 @@ let { object = pkgs.writeText "mdadm.conf" config.boot.initrd.mdadmConf; symlink = "/etc/mdadm.conf"; } - { object = config.environment.etc."modprobe.d/nixos-initrd.conf".source; - symlink = "/etc/modprobe.d/nixos-initrd.conf"; - } { object = pkgs.runCommand "initrd-kmod-blacklist-ubuntu" { src = "${pkgs.kmod-blacklist-ubuntu}/modprobe.conf"; preferLocalBuild = true; @@ -581,7 +578,7 @@ in else "gzip" ); defaultText = literalDocBook "<literal>zstd</literal> if the kernel supports it (5.9+), <literal>gzip</literal> if not"; - type = types.unspecified; # We don't have a function type... + type = types.either types.str (types.functionTo types.str); description = '' The compressor to use on the initrd image. May be any of: diff --git a/nixos/modules/system/boot/systemd.nix b/nixos/modules/system/boot/systemd.nix index 4019af63ad3..ff002d87a12 100644 --- a/nixos/modules/system/boot/systemd.nix +++ b/nixos/modules/system/boot/systemd.nix @@ -11,6 +11,22 @@ let systemd = cfg.package; + inherit (systemdUtils.lib) + makeJobScript + unitConfig + serviceConfig + mountConfig + automountConfig + commonUnitText + targetToUnit + serviceToUnit + socketToUnit + timerToUnit + pathToUnit + mountToUnit + automountToUnit + sliceToUnit; + upstreamSystemUnits = [ # Targets. "basic.target" @@ -209,207 +225,6 @@ let "xdg-desktop-autostart.target" ]; - makeJobScript = name: text: - let - scriptName = replaceChars [ "\\" "@" ] [ "-" "_" ] (shellEscape name); - out = (pkgs.writeShellScriptBin scriptName '' - set -e - ${text} - '').overrideAttrs (_: { - # The derivation name is different from the script file name - # to keep the script file name short to avoid cluttering logs. - name = "unit-script-${scriptName}"; - }); - in "${out}/bin/${scriptName}"; - - unitConfig = { config, options, ... }: { - config = { - unitConfig = - optionalAttrs (config.requires != []) - { Requires = toString config.requires; } - // optionalAttrs (config.wants != []) - { Wants = toString config.wants; } - // optionalAttrs (config.after != []) - { After = toString config.after; } - // optionalAttrs (config.before != []) - { Before = toString config.before; } - // optionalAttrs (config.bindsTo != []) - { BindsTo = toString config.bindsTo; } - // optionalAttrs (config.partOf != []) - { PartOf = toString config.partOf; } - // optionalAttrs (config.conflicts != []) - { Conflicts = toString config.conflicts; } - // optionalAttrs (config.requisite != []) - { Requisite = toString config.requisite; } - // optionalAttrs (config.restartTriggers != []) - { X-Restart-Triggers = toString config.restartTriggers; } - // optionalAttrs (config.reloadTriggers != []) - { X-Reload-Triggers = toString config.reloadTriggers; } - // optionalAttrs (config.description != "") { - Description = config.description; } - // optionalAttrs (config.documentation != []) { - Documentation = toString config.documentation; } - // optionalAttrs (config.onFailure != []) { - OnFailure = toString config.onFailure; } - // optionalAttrs (options.startLimitIntervalSec.isDefined) { - StartLimitIntervalSec = toString config.startLimitIntervalSec; - } // optionalAttrs (options.startLimitBurst.isDefined) { - StartLimitBurst = toString config.startLimitBurst; - }; - }; - }; - - serviceConfig = { name, config, ... }: { - config = mkMerge - [ { # Default path for systemd services. Should be quite minimal. - path = mkAfter - [ pkgs.coreutils - pkgs.findutils - pkgs.gnugrep - pkgs.gnused - systemd - ]; - environment.PATH = "${makeBinPath config.path}:${makeSearchPathOutput "bin" "sbin" config.path}"; - } - (mkIf (config.preStart != "") - { serviceConfig.ExecStartPre = - [ (makeJobScript "${name}-pre-start" config.preStart) ]; - }) - (mkIf (config.script != "") - { serviceConfig.ExecStart = - makeJobScript "${name}-start" config.script + " " + config.scriptArgs; - }) - (mkIf (config.postStart != "") - { serviceConfig.ExecStartPost = - [ (makeJobScript "${name}-post-start" config.postStart) ]; - }) - (mkIf (config.reload != "") - { serviceConfig.ExecReload = - makeJobScript "${name}-reload" config.reload; - }) - (mkIf (config.preStop != "") - { serviceConfig.ExecStop = - makeJobScript "${name}-pre-stop" config.preStop; - }) - (mkIf (config.postStop != "") - { serviceConfig.ExecStopPost = - makeJobScript "${name}-post-stop" config.postStop; - }) - ]; - }; - - mountConfig = { config, ... }: { - config = { - mountConfig = - { What = config.what; - Where = config.where; - } // optionalAttrs (config.type != "") { - Type = config.type; - } // optionalAttrs (config.options != "") { - Options = config.options; - }; - }; - }; - - automountConfig = { config, ... }: { - config = { - automountConfig = - { Where = config.where; - }; - }; - }; - - commonUnitText = def: '' - [Unit] - ${attrsToSection def.unitConfig} - ''; - - targetToUnit = name: def: - { inherit (def) aliases wantedBy requiredBy enable; - text = - '' - [Unit] - ${attrsToSection def.unitConfig} - ''; - }; - - serviceToUnit = name: def: - { inherit (def) aliases wantedBy requiredBy enable; - text = commonUnitText def + - '' - [Service] - ${let env = cfg.globalEnvironment // def.environment; - in concatMapStrings (n: - let s = optionalString (env.${n} != null) - "Environment=${builtins.toJSON "${n}=${env.${n}}"}\n"; - # systemd max line length is now 1MiB - # https://github.com/systemd/systemd/commit/e6dde451a51dc5aaa7f4d98d39b8fe735f73d2af - in if stringLength s >= 1048576 then throw "The value of the environment variable ‘${n}’ in systemd service ‘${name}.service’ is too long." else s) (attrNames env)} - ${if def.reloadIfChanged then '' - X-ReloadIfChanged=true - '' else if !def.restartIfChanged then '' - X-RestartIfChanged=false - '' else ""} - ${optionalString (!def.stopIfChanged) "X-StopIfChanged=false"} - ${attrsToSection def.serviceConfig} - ''; - }; - - socketToUnit = name: def: - { inherit (def) aliases wantedBy requiredBy enable; - text = commonUnitText def + - '' - [Socket] - ${attrsToSection def.socketConfig} - ${concatStringsSep "\n" (map (s: "ListenStream=${s}") def.listenStreams)} - ${concatStringsSep "\n" (map (s: "ListenDatagram=${s}") def.listenDatagrams)} - ''; - }; - - timerToUnit = name: def: - { inherit (def) aliases wantedBy requiredBy enable; - text = commonUnitText def + - '' - [Timer] - ${attrsToSection def.timerConfig} - ''; - }; - - pathToUnit = name: def: - { inherit (def) aliases wantedBy requiredBy enable; - text = commonUnitText def + - '' - [Path] - ${attrsToSection def.pathConfig} - ''; - }; - - mountToUnit = name: def: - { inherit (def) aliases wantedBy requiredBy enable; - text = commonUnitText def + - '' - [Mount] - ${attrsToSection def.mountConfig} - ''; - }; - - automountToUnit = name: def: - { inherit (def) aliases wantedBy requiredBy enable; - text = commonUnitText def + - '' - [Automount] - ${attrsToSection def.automountConfig} - ''; - }; - - sliceToUnit = name: def: - { inherit (def) aliases wantedBy requiredBy enable; - text = commonUnitText def + - '' - [Slice] - ${attrsToSection def.sliceConfig} - ''; - }; logindHandlerType = types.enum [ "ignore" "poweroff" "reboot" "halt" "kexec" "suspend" diff --git a/nixos/modules/tasks/auto-upgrade.nix b/nixos/modules/tasks/auto-upgrade.nix index b931b27ad81..1404dcbaf7c 100644 --- a/nixos/modules/tasks/auto-upgrade.nix +++ b/nixos/modules/tasks/auto-upgrade.nix @@ -80,6 +80,7 @@ in { Reboot the system into the new generation instead of a switch if the new generation uses a different kernel, kernel modules or initrd than the booted system. + See <option>rebootWindow</option> for configuring the times at which a reboot is allowed. ''; }; @@ -96,6 +97,32 @@ in { ''; }; + rebootWindow = mkOption { + description = '' + Define a lower and upper time value (in HH:MM format) which + constitute a time window during which reboots are allowed after an upgrade. + This option only has an effect when <option>allowReboot</option> is enabled. + The default value of <literal>null</literal> means that reboots are allowed at any time. + ''; + default = null; + example = { lower = "01:00"; upper = "05:00"; }; + type = with types; nullOr (submodule { + options = { + lower = mkOption { + description = "Lower limit of the reboot window"; + type = types.strMatching "[[:digit:]]{2}:[[:digit:]]{2}"; + example = "01:00"; + }; + + upper = mkOption { + description = "Upper limit of the reboot window"; + type = types.strMatching "[[:digit:]]{2}:[[:digit:]]{2}"; + example = "05:00"; + }; + }; + }); + }; + }; }; @@ -110,12 +137,10 @@ in { }]; system.autoUpgrade.flags = (if cfg.flake == null then - [ "--no-build-output" ] ++ (if cfg.channel == null then - [ "--upgrade" ] - else [ + [ "--no-build-output" ] ++ optionals (cfg.channel != null) [ "-I" "nixpkgs=${cfg.channel}/nixexprs.tar.xz" - ]) + ] else [ "--flake ${cfg.flake}" ]); @@ -143,19 +168,52 @@ in { ]; script = let - nixos-rebuild = - "${config.system.build.nixos-rebuild}/bin/nixos-rebuild"; + nixos-rebuild = "${config.system.build.nixos-rebuild}/bin/nixos-rebuild"; + date = "${pkgs.coreutils}/bin/date"; + readlink = "${pkgs.coreutils}/bin/readlink"; + shutdown = "${pkgs.systemd}/bin/shutdown"; + upgradeFlag = optional (cfg.channel == null) "--upgrade"; in if cfg.allowReboot then '' - ${nixos-rebuild} boot ${toString cfg.flags} - booted="$(readlink /run/booted-system/{initrd,kernel,kernel-modules})" - built="$(readlink /nix/var/nix/profiles/system/{initrd,kernel,kernel-modules})" - if [ "$booted" = "$built" ]; then + ${nixos-rebuild} boot ${toString (cfg.flags ++ upgradeFlag)} + booted="$(${readlink} /run/booted-system/{initrd,kernel,kernel-modules})" + built="$(${readlink} /nix/var/nix/profiles/system/{initrd,kernel,kernel-modules})" + + ${optionalString (cfg.rebootWindow != null) '' + current_time="$(${date} +%H:%M)" + + lower="${cfg.rebootWindow.lower}" + upper="${cfg.rebootWindow.upper}" + + if [[ "''${lower}" < "''${upper}" ]]; then + if [[ "''${current_time}" > "''${lower}" ]] && \ + [[ "''${current_time}" < "''${upper}" ]]; then + do_reboot="true" + else + do_reboot="false" + fi + else + # lower > upper, so we are crossing midnight (e.g. lower=23h, upper=6h) + # we want to reboot if cur > 23h or cur < 6h + if [[ "''${current_time}" < "''${upper}" ]] || \ + [[ "''${current_time}" > "''${lower}" ]]; then + do_reboot="true" + else + do_reboot="false" + fi + fi + ''} + + if [ "''${booted}" = "''${built}" ]; then ${nixos-rebuild} switch ${toString cfg.flags} + ${optionalString (cfg.rebootWindow != null) '' + elif [ "''${do_reboot}" != true ]; then + echo "Outside of configured reboot window, skipping." + ''} else - /run/current-system/sw/bin/shutdown -r +1 + ${shutdown} -r +1 fi '' else '' - ${nixos-rebuild} switch ${toString cfg.flags} + ${nixos-rebuild} switch ${toString (cfg.flags ++ upgradeFlag)} ''; startAt = cfg.dates; @@ -167,3 +225,4 @@ in { }; } + diff --git a/nixos/modules/tasks/network-interfaces.nix b/nixos/modules/tasks/network-interfaces.nix index 06117ab451d..01980b80f1c 100644 --- a/nixos/modules/tasks/network-interfaces.nix +++ b/nixos/modules/tasks/network-interfaces.nix @@ -1021,6 +1021,12 @@ in dev = "enp4s0f0"; type = "tap"; }; + gre6Tunnel = { + remote = "fd7a:5634::1"; + local = "fd7a:5634::2"; + dev = "enp4s0f0"; + type = "tun6"; + }; } ''; description = '' @@ -1058,10 +1064,15 @@ in }; type = mkOption { - type = with types; enum [ "tun" "tap" ]; + type = with types; enum [ "tun" "tap" "tun6" "tap6" ]; default = "tap"; example = "tap"; - apply = v: if v == "tun" then "gre" else "gretap"; + apply = v: { + tun = "gre"; + tap = "gretap"; + tun6 = "ip6gre"; + tap6 = "ip6gretap"; + }.${v}; description = '' Whether the tunnel routes layer 2 (tap) or layer 3 (tun) traffic. ''; diff --git a/nixos/tests/all-tests.nix b/nixos/tests/all-tests.nix index 001518d02cb..423a6bd1e4a 100644 --- a/nixos/tests/all-tests.nix +++ b/nixos/tests/all-tests.nix @@ -189,9 +189,9 @@ in grocy = handleTest ./grocy.nix {}; grub = handleTest ./grub.nix {}; gvisor = handleTest ./gvisor.nix {}; - hadoop.all = handleTestOn [ "x86_64-linux" "aarch64-linux" ] ./hadoop/hadoop.nix {}; - hadoop.hdfs = handleTestOn [ "x86_64-linux" "aarch64-linux" ] ./hadoop/hdfs.nix {}; - hadoop.yarn = handleTestOn [ "x86_64-linux" "aarch64-linux" ] ./hadoop/yarn.nix {}; + hadoop = import ./hadoop { inherit handleTestOn; package=pkgs.hadoop; }; + hadoop_3_2 = import ./hadoop { inherit handleTestOn; package=pkgs.hadoop_3_2; }; + hadoop2 = import ./hadoop { inherit handleTestOn; package=pkgs.hadoop2; }; haka = handleTest ./haka.nix {}; haproxy = handleTest ./haproxy.nix {}; hardened = handleTest ./hardened.nix {}; @@ -384,6 +384,7 @@ in os-prober = handleTestOn ["x86_64-linux"] ./os-prober.nix {}; osrm-backend = handleTest ./osrm-backend.nix {}; overlayfs = handleTest ./overlayfs.nix {}; + pacemaker = handleTest ./pacemaker.nix {}; packagekit = handleTest ./packagekit.nix {}; pam-file-contents = handleTest ./pam/pam-file-contents.nix {}; pam-oath-login = handleTest ./pam/pam-oath-login.nix {}; @@ -433,6 +434,7 @@ in prometheus = handleTest ./prometheus.nix {}; prometheus-exporters = handleTest ./prometheus-exporters.nix {}; prosody = handleTest ./xmpp/prosody.nix {}; + prosody-mysql = handleTest ./xmpp/prosody-mysql.nix {}; proxy = handleTest ./proxy.nix {}; prowlarr = handleTest ./prowlarr.nix {}; pt2-clone = handleTest ./pt2-clone.nix {}; @@ -483,7 +485,7 @@ in sonarr = handleTest ./sonarr.nix {}; sourcehut = handleTest ./sourcehut.nix {}; spacecookie = handleTest ./spacecookie.nix {}; - spark = handleTestOn ["x86_64-linux"] ./spark {}; + spark = handleTestOn [ "x86_64-linux" "aarch64-linux" ] ./spark {}; sslh = handleTest ./sslh.nix {}; sssd = handleTestOn ["x86_64-linux"] ./sssd.nix {}; sssd-ldap = handleTestOn ["x86_64-linux"] ./sssd-ldap.nix {}; @@ -519,6 +521,7 @@ in telegraf = handleTest ./telegraf.nix {}; teleport = handleTest ./teleport.nix {}; thelounge = handleTest ./thelounge.nix {}; + terminal-emulators = handleTest ./terminal-emulators.nix {}; tiddlywiki = handleTest ./tiddlywiki.nix {}; tigervnc = handleTest ./tigervnc.nix {}; timezone = handleTest ./timezone.nix {}; diff --git a/nixos/tests/hadoop/default.nix b/nixos/tests/hadoop/default.nix new file mode 100644 index 00000000000..d2a97cbeffb --- /dev/null +++ b/nixos/tests/hadoop/default.nix @@ -0,0 +1,7 @@ +{ handleTestOn, package, ... }: + +{ + all = handleTestOn [ "x86_64-linux" "aarch64-linux" ] ./hadoop.nix { inherit package; }; + hdfs = handleTestOn [ "x86_64-linux" "aarch64-linux" ] ./hdfs.nix { inherit package; }; + yarn = handleTestOn [ "x86_64-linux" "aarch64-linux" ] ./yarn.nix { inherit package; }; +} diff --git a/nixos/tests/hadoop/hadoop.nix b/nixos/tests/hadoop/hadoop.nix index 48737debab5..b132f4fa58b 100644 --- a/nixos/tests/hadoop/hadoop.nix +++ b/nixos/tests/hadoop/hadoop.nix @@ -1,121 +1,148 @@ # This test is very comprehensive. It tests whether all hadoop services work well with each other. # Run this when updating the Hadoop package or making significant changes to the hadoop module. # For a more basic test, see hdfs.nix and yarn.nix -import ../make-test-python.nix ({pkgs, ...}: { - - nodes = let - package = pkgs.hadoop; - coreSite = { - "fs.defaultFS" = "hdfs://ns1"; - }; - hdfsSite = { - "dfs.namenode.rpc-bind-host" = "0.0.0.0"; - "dfs.namenode.http-bind-host" = "0.0.0.0"; - "dfs.namenode.servicerpc-bind-host" = "0.0.0.0"; - - # HA Quorum Journal Manager configuration - "dfs.nameservices" = "ns1"; - "dfs.ha.namenodes.ns1" = "nn1,nn2"; - "dfs.namenode.shared.edits.dir.ns1.nn1" = "qjournal://jn1:8485;jn2:8485;jn3:8485/ns1"; - "dfs.namenode.shared.edits.dir.ns1.nn2" = "qjournal://jn1:8485;jn2:8485;jn3:8485/ns1"; - "dfs.namenode.rpc-address.ns1.nn1" = "nn1:8020"; - "dfs.namenode.rpc-address.ns1.nn2" = "nn2:8020"; - "dfs.namenode.servicerpc-address.ns1.nn1" = "nn1:8022"; - "dfs.namenode.servicerpc-address.ns1.nn2" = "nn2:8022"; - "dfs.namenode.http-address.ns1.nn1" = "nn1:9870"; - "dfs.namenode.http-address.ns1.nn2" = "nn2:9870"; - - # Automatic failover configuration - "dfs.client.failover.proxy.provider.ns1" = "org.apache.hadoop.hdfs.server.namenode.ha.ConfiguredFailoverProxyProvider"; - "dfs.ha.automatic-failover.enabled.ns1" = "true"; - "dfs.ha.fencing.methods" = "shell(true)"; - "ha.zookeeper.quorum" = "zk1:2181"; - }; - yarnSiteHA = { - "yarn.resourcemanager.zk-address" = "zk1:2181"; - "yarn.resourcemanager.ha.enabled" = "true"; - "yarn.resourcemanager.ha.rm-ids" = "rm1,rm2"; - "yarn.resourcemanager.hostname.rm1" = "rm1"; - "yarn.resourcemanager.hostname.rm2" = "rm2"; - "yarn.resourcemanager.ha.automatic-failover.enabled" = "true"; - "yarn.resourcemanager.cluster-id" = "cluster1"; - # yarn.resourcemanager.webapp.address needs to be defined even though yarn.resourcemanager.hostname is set. This shouldn't be necessary, but there's a bug in - # hadoop-yarn-project/hadoop-yarn/hadoop-yarn-server/hadoop-yarn-server-web-proxy/src/main/java/org/apache/hadoop/yarn/server/webproxy/amfilter/AmFilterInitializer.java:70 - # that causes AM containers to fail otherwise. - "yarn.resourcemanager.webapp.address.rm1" = "rm1:8088"; - "yarn.resourcemanager.webapp.address.rm2" = "rm2:8088"; - }; - in { - zk1 = { ... }: { - services.zookeeper.enable = true; - networking.firewall.allowedTCPPorts = [ 2181 ]; - }; - - # HDFS cluster - nn1 = {pkgs, options, ...}: { - services.hadoop = { - inherit package coreSite hdfsSite; - hdfs.namenode.enable = true; - hdfs.zkfc.enable = true; +import ../make-test-python.nix ({ package, ... }: { + name = "hadoop-combined"; + + nodes = + let + coreSite = { + "fs.defaultFS" = "hdfs://ns1"; + }; + hdfsSite = { + # HA Quorum Journal Manager configuration + "dfs.nameservices" = "ns1"; + "dfs.ha.namenodes.ns1" = "nn1,nn2"; + "dfs.namenode.shared.edits.dir.ns1" = "qjournal://jn1:8485;jn2:8485;jn3:8485/ns1"; + "dfs.namenode.rpc-address.ns1.nn1" = "nn1:8020"; + "dfs.namenode.rpc-address.ns1.nn2" = "nn2:8020"; + "dfs.namenode.servicerpc-address.ns1.nn1" = "nn1:8022"; + "dfs.namenode.servicerpc-address.ns1.nn2" = "nn2:8022"; + "dfs.namenode.http-address.ns1.nn1" = "nn1:9870"; + "dfs.namenode.http-address.ns1.nn2" = "nn2:9870"; + + # Automatic failover configuration + "dfs.client.failover.proxy.provider.ns1" = "org.apache.hadoop.hdfs.server.namenode.ha.ConfiguredFailoverProxyProvider"; + "dfs.ha.automatic-failover.enabled.ns1" = "true"; + "dfs.ha.fencing.methods" = "shell(true)"; + "ha.zookeeper.quorum" = "zk1:2181"; + }; + yarnSite = { + "yarn.resourcemanager.zk-address" = "zk1:2181"; + "yarn.resourcemanager.ha.enabled" = "true"; + "yarn.resourcemanager.ha.rm-ids" = "rm1,rm2"; + "yarn.resourcemanager.hostname.rm1" = "rm1"; + "yarn.resourcemanager.hostname.rm2" = "rm2"; + "yarn.resourcemanager.ha.automatic-failover.enabled" = "true"; + "yarn.resourcemanager.cluster-id" = "cluster1"; + # yarn.resourcemanager.webapp.address needs to be defined even though yarn.resourcemanager.hostname is set. This shouldn't be necessary, but there's a bug in + # hadoop-yarn-project/hadoop-yarn/hadoop-yarn-server/hadoop-yarn-server-web-proxy/src/main/java/org/apache/hadoop/yarn/server/webproxy/amfilter/AmFilterInitializer.java:70 + # that causes AM containers to fail otherwise. + "yarn.resourcemanager.webapp.address.rm1" = "rm1:8088"; + "yarn.resourcemanager.webapp.address.rm2" = "rm2:8088"; + }; + in + { + zk1 = { ... }: { + services.zookeeper.enable = true; + networking.firewall.allowedTCPPorts = [ 2181 ]; }; - }; - nn2 = {pkgs, options, ...}: { - services.hadoop = { - inherit package coreSite hdfsSite; - hdfs.namenode.enable = true; - hdfs.zkfc.enable = true; + + # HDFS cluster + nn1 = { ... }: { + services.hadoop = { + inherit package coreSite hdfsSite; + hdfs.namenode = { + enable = true; + openFirewall = true; + }; + hdfs.zkfc.enable = true; + }; + }; + nn2 = { ... }: { + services.hadoop = { + inherit package coreSite hdfsSite; + hdfs.namenode = { + enable = true; + openFirewall = true; + }; + hdfs.zkfc.enable = true; + }; }; - }; - jn1 = {pkgs, options, ...}: { - services.hadoop = { - inherit package coreSite hdfsSite; - hdfs.journalnode.enable = true; + jn1 = { ... }: { + services.hadoop = { + inherit package coreSite hdfsSite; + hdfs.journalnode = { + enable = true; + openFirewall = true; + }; + }; }; - }; - jn2 = {pkgs, options, ...}: { - services.hadoop = { - inherit package coreSite hdfsSite; - hdfs.journalnode.enable = true; + jn2 = { ... }: { + services.hadoop = { + inherit package coreSite hdfsSite; + hdfs.journalnode = { + enable = true; + openFirewall = true; + }; + }; }; - }; - jn3 = {pkgs, options, ...}: { - services.hadoop = { - inherit package coreSite hdfsSite; - hdfs.journalnode.enable = true; + jn3 = { ... }: { + services.hadoop = { + inherit package coreSite hdfsSite; + hdfs.journalnode = { + enable = true; + openFirewall = true; + }; + }; + }; + + dn1 = { ... }: { + services.hadoop = { + inherit package coreSite hdfsSite; + hdfs.datanode = { + enable = true; + openFirewall = true; + }; + }; }; - }; - dn1 = {pkgs, options, ...}: { - services.hadoop = { - inherit package coreSite hdfsSite; - hdfs.datanode.enable = true; + # YARN cluster + rm1 = { options, ... }: { + services.hadoop = { + inherit package coreSite hdfsSite yarnSite; + yarn.resourcemanager = { + enable = true; + openFirewall = true; + }; + }; }; - }; - - # YARN cluster - rm1 = {pkgs, options, ...}: { - services.hadoop = { - inherit package coreSite hdfsSite; - yarnSite = options.services.hadoop.yarnSite.default // yarnSiteHA; - yarn.resourcemanager.enable = true; + rm2 = { options, ... }: { + services.hadoop = { + inherit package coreSite hdfsSite yarnSite; + yarn.resourcemanager = { + enable = true; + openFirewall = true; + }; + }; }; - }; - rm2 = {pkgs, options, ...}: { - services.hadoop = { - inherit package coreSite hdfsSite; - yarnSite = options.services.hadoop.yarnSite.default // yarnSiteHA; - yarn.resourcemanager.enable = true; + nm1 = { options, ... }: { + virtualisation.memorySize = 2048; + services.hadoop = { + inherit package coreSite hdfsSite yarnSite; + yarn.nodemanager = { + enable = true; + openFirewall = true; + }; + }; }; - }; - nm1 = {pkgs, options, ...}: { - virtualisation.memorySize = 2048; - services.hadoop = { - inherit package coreSite hdfsSite; - yarnSite = options.services.hadoop.yarnSite.default // yarnSiteHA; - yarn.nodemanager.enable = true; + client = { options, ... }: { + services.hadoop = { + gatewayRole.enable = true; + inherit package coreSite hdfsSite yarnSite; + }; }; - }; }; testScript = '' @@ -173,26 +200,26 @@ import ../make-test-python.nix ({pkgs, ...}: { # DN should have started by now, but confirm anyway dn1.wait_for_unit("hdfs-datanode") # Print states of namenodes - dn1.succeed("sudo -u hdfs hdfs haadmin -getAllServiceState | systemd-cat") + client.succeed("sudo -u hdfs hdfs haadmin -getAllServiceState | systemd-cat") # Wait for cluster to exit safemode - dn1.succeed("sudo -u hdfs hdfs dfsadmin -safemode wait") - dn1.succeed("sudo -u hdfs hdfs haadmin -getAllServiceState | systemd-cat") + client.succeed("sudo -u hdfs hdfs dfsadmin -safemode wait") + client.succeed("sudo -u hdfs hdfs haadmin -getAllServiceState | systemd-cat") # test R/W - dn1.succeed("echo testfilecontents | sudo -u hdfs hdfs dfs -put - /testfile") - assert "testfilecontents" in dn1.succeed("sudo -u hdfs hdfs dfs -cat /testfile") + client.succeed("echo testfilecontents | sudo -u hdfs hdfs dfs -put - /testfile") + assert "testfilecontents" in client.succeed("sudo -u hdfs hdfs dfs -cat /testfile") # Test NN failover nn1.succeed("systemctl stop hdfs-namenode") - assert "active" in dn1.succeed("sudo -u hdfs hdfs haadmin -getAllServiceState") - dn1.succeed("sudo -u hdfs hdfs haadmin -getAllServiceState | systemd-cat") - assert "testfilecontents" in dn1.succeed("sudo -u hdfs hdfs dfs -cat /testfile") + assert "active" in client.succeed("sudo -u hdfs hdfs haadmin -getAllServiceState") + client.succeed("sudo -u hdfs hdfs haadmin -getAllServiceState | systemd-cat") + assert "testfilecontents" in client.succeed("sudo -u hdfs hdfs dfs -cat /testfile") nn1.succeed("systemctl start hdfs-namenode") nn1.wait_for_open_port(9870) nn1.wait_for_open_port(8022) nn1.wait_for_open_port(8020) - assert "standby" in dn1.succeed("sudo -u hdfs hdfs haadmin -getAllServiceState") - dn1.succeed("sudo -u hdfs hdfs haadmin -getAllServiceState | systemd-cat") + assert "standby" in client.succeed("sudo -u hdfs hdfs haadmin -getAllServiceState") + client.succeed("sudo -u hdfs hdfs haadmin -getAllServiceState | systemd-cat") #### YARN tests #### @@ -208,21 +235,21 @@ import ../make-test-python.nix ({pkgs, ...}: { nm1.wait_for_unit("yarn-nodemanager") nm1.wait_for_open_port(8042) nm1.wait_for_open_port(8040) - nm1.wait_until_succeeds("yarn node -list | grep Nodes:1") - nm1.succeed("sudo -u yarn yarn rmadmin -getAllServiceState | systemd-cat") - nm1.succeed("sudo -u yarn yarn node -list | systemd-cat") + client.wait_until_succeeds("yarn node -list | grep Nodes:1") + client.succeed("sudo -u yarn yarn rmadmin -getAllServiceState | systemd-cat") + client.succeed("sudo -u yarn yarn node -list | systemd-cat") # Test RM failover rm1.succeed("systemctl stop yarn-resourcemanager") - assert "standby" not in nm1.succeed("sudo -u yarn yarn rmadmin -getAllServiceState") - nm1.succeed("sudo -u yarn yarn rmadmin -getAllServiceState | systemd-cat") + assert "standby" not in client.succeed("sudo -u yarn yarn rmadmin -getAllServiceState") + client.succeed("sudo -u yarn yarn rmadmin -getAllServiceState | systemd-cat") rm1.succeed("systemctl start yarn-resourcemanager") rm1.wait_for_unit("yarn-resourcemanager") rm1.wait_for_open_port(8088) - assert "standby" in nm1.succeed("sudo -u yarn yarn rmadmin -getAllServiceState") - nm1.succeed("sudo -u yarn yarn rmadmin -getAllServiceState | systemd-cat") + assert "standby" in client.succeed("sudo -u yarn yarn rmadmin -getAllServiceState") + client.succeed("sudo -u yarn yarn rmadmin -getAllServiceState | systemd-cat") - assert "Estimated value of Pi is" in nm1.succeed("HADOOP_USER_NAME=hdfs yarn jar $(readlink $(which yarn) | sed -r 's~bin/yarn~lib/hadoop-*/share/hadoop/mapreduce/hadoop-mapreduce-examples-*.jar~g') pi 2 10") - assert "SUCCEEDED" in nm1.succeed("yarn application -list -appStates FINISHED") + assert "Estimated value of Pi is" in client.succeed("HADOOP_USER_NAME=hdfs yarn jar $(readlink $(which yarn) | sed -r 's~bin/yarn~lib/hadoop-*/share/hadoop/mapreduce/hadoop-mapreduce-examples-*.jar~g') pi 2 10") + assert "SUCCEEDED" in client.succeed("yarn application -list -appStates FINISHED") ''; }) diff --git a/nixos/tests/hadoop/hdfs.nix b/nixos/tests/hadoop/hdfs.nix index b63cbf48032..9415500463d 100644 --- a/nixos/tests/hadoop/hdfs.nix +++ b/nixos/tests/hadoop/hdfs.nix @@ -1,32 +1,46 @@ # Test a minimal HDFS cluster with no HA -import ../make-test-python.nix ({...}: { - nodes = { - namenode = {pkgs, ...}: { +import ../make-test-python.nix ({ package, lib, ... }: +with lib; +{ + name = "hadoop-hdfs"; + + nodes = let + coreSite = { + "fs.defaultFS" = "hdfs://namenode:8020"; + "hadoop.proxyuser.httpfs.groups" = "*"; + "hadoop.proxyuser.httpfs.hosts" = "*"; + }; + in { + namenode = { pkgs, ... }: { services.hadoop = { - package = pkgs.hadoop; + inherit package; hdfs = { namenode = { enable = true; + openFirewall = true; formatOnInit = true; }; - httpfs.enable = true; - }; - coreSite = { - "fs.defaultFS" = "hdfs://namenode:8020"; - "hadoop.proxyuser.httpfs.groups" = "*"; - "hadoop.proxyuser.httpfs.hosts" = "*"; + httpfs = { + # The NixOS hadoop module only support webHDFS on 3.3 and newer + enable = mkIf (versionAtLeast package.version "3.3") true; + openFirewall = true; + }; }; + inherit coreSite; }; }; - datanode = {pkgs, ...}: { + datanode = { pkgs, ... }: { services.hadoop = { - package = pkgs.hadoop; - hdfs.datanode.enable = true; - coreSite = { - "fs.defaultFS" = "hdfs://namenode:8020"; - "hadoop.proxyuser.httpfs.groups" = "*"; - "hadoop.proxyuser.httpfs.hosts" = "*"; + inherit package; + hdfs.datanode = { + enable = true; + openFirewall = true; + dataDirs = [{ + type = "DISK"; + path = "/tmp/dn1"; + }]; }; + inherit coreSite; }; }; }; @@ -37,21 +51,32 @@ import ../make-test-python.nix ({...}: { namenode.wait_for_unit("hdfs-namenode") namenode.wait_for_unit("network.target") namenode.wait_for_open_port(8020) + namenode.succeed("ss -tulpne | systemd-cat") + namenode.succeed("cat /etc/hadoop*/hdfs-site.xml | systemd-cat") namenode.wait_for_open_port(9870) datanode.wait_for_unit("hdfs-datanode") datanode.wait_for_unit("network.target") + '' + ( if versionAtLeast package.version "3" then '' datanode.wait_for_open_port(9864) datanode.wait_for_open_port(9866) datanode.wait_for_open_port(9867) - namenode.succeed("curl -f http://namenode:9870") datanode.succeed("curl -f http://datanode:9864") + '' else '' + datanode.wait_for_open_port(50075) + datanode.wait_for_open_port(50010) + datanode.wait_for_open_port(50020) + + datanode.succeed("curl -f http://datanode:50075") + '' ) + '' + namenode.succeed("curl -f http://namenode:9870") datanode.succeed("sudo -u hdfs hdfs dfsadmin -safemode wait") datanode.succeed("echo testfilecontents | sudo -u hdfs hdfs dfs -put - /testfile") assert "testfilecontents" in datanode.succeed("sudo -u hdfs hdfs dfs -cat /testfile") + '' + optionalString ( versionAtLeast package.version "3.3" ) '' namenode.wait_for_unit("hdfs-httpfs") namenode.wait_for_open_port(14000) assert "testfilecontents" in datanode.succeed("curl -f \"http://namenode:14000/webhdfs/v1/testfile?user.name=hdfs&op=OPEN\" 2>&1") diff --git a/nixos/tests/hadoop/yarn.nix b/nixos/tests/hadoop/yarn.nix index 09bdb35791c..1bf8e3831f6 100644 --- a/nixos/tests/hadoop/yarn.nix +++ b/nixos/tests/hadoop/yarn.nix @@ -1,22 +1,30 @@ # This only tests if YARN is able to start its services -import ../make-test-python.nix ({...}: { +import ../make-test-python.nix ({ package, ... }: { + name = "hadoop-yarn"; + nodes = { - resourcemanager = {pkgs, ...}: { - services.hadoop.package = pkgs.hadoop; - services.hadoop.yarn.resourcemanager.enable = true; - services.hadoop.yarnSite = { - "yarn.resourcemanager.scheduler.class" = "org.apache.hadoop.yarn.server.resourcemanager.scheduler.fifo.FifoScheduler"; + resourcemanager = { ... }: { + services.hadoop = { + inherit package; + yarn.resourcemanager = { + enable = true; + openFirewall = true; + }; }; }; - nodemanager = {pkgs, ...}: { - services.hadoop.package = pkgs.hadoop; - services.hadoop.yarn.nodemanager.enable = true; - services.hadoop.yarnSite = { - "yarn.resourcemanager.hostname" = "resourcemanager"; - "yarn.nodemanager.log-dirs" = "/tmp/userlogs"; + nodemanager = { options, lib, ... }: { + services.hadoop = { + inherit package; + yarn.nodemanager = { + enable = true; + openFirewall = true; + }; + yarnSite = options.services.hadoop.yarnSite.default // { + "yarn.resourcemanager.hostname" = "resourcemanager"; + "yarn.nodemanager.log-dirs" = "/tmp/userlogs"; + }; }; }; - }; testScript = '' diff --git a/nixos/tests/networking.nix b/nixos/tests/networking.nix index 8c9df19f2d5..b763cbd4665 100644 --- a/nixos/tests/networking.nix +++ b/nixos/tests/networking.nix @@ -498,6 +498,7 @@ let networking = { useNetworkd = networkd; useDHCP = false; + firewall.extraCommands = "ip6tables -A nixos-fw -p gre -j nixos-fw-accept"; }; }; in { @@ -506,7 +507,7 @@ let mkMerge [ (node args) { - virtualisation.vlans = [ 1 2 ]; + virtualisation.vlans = [ 1 2 4 ]; networking = { greTunnels = { greTunnel = { @@ -515,12 +516,24 @@ let dev = "eth2"; type = "tap"; }; + gre6Tunnel = { + local = "fd00:1234:5678:4::1"; + remote = "fd00:1234:5678:4::2"; + dev = "eth3"; + type = "tun6"; + }; }; bridges.bridge.interfaces = [ "greTunnel" "eth1" ]; interfaces.eth1.ipv4.addresses = mkOverride 0 []; interfaces.bridge.ipv4.addresses = mkOverride 0 [ { address = "192.168.1.1"; prefixLength = 24; } ]; + interfaces.eth3.ipv6.addresses = [ + { address = "fd00:1234:5678:4::1"; prefixLength = 64; } + ]; + interfaces.gre6Tunnel.ipv6.addresses = mkOverride 0 [ + { address = "fc00::1"; prefixLength = 64; } + ]; }; } ]; @@ -528,7 +541,7 @@ let mkMerge [ (node args) { - virtualisation.vlans = [ 2 3 ]; + virtualisation.vlans = [ 2 3 4 ]; networking = { greTunnels = { greTunnel = { @@ -537,12 +550,24 @@ let dev = "eth1"; type = "tap"; }; + gre6Tunnel = { + local = "fd00:1234:5678:4::2"; + remote = "fd00:1234:5678:4::1"; + dev = "eth3"; + type = "tun6"; + }; }; bridges.bridge.interfaces = [ "greTunnel" "eth2" ]; interfaces.eth2.ipv4.addresses = mkOverride 0 []; interfaces.bridge.ipv4.addresses = mkOverride 0 [ { address = "192.168.1.2"; prefixLength = 24; } ]; + interfaces.eth3.ipv6.addresses = [ + { address = "fd00:1234:5678:4::2"; prefixLength = 64; } + ]; + interfaces.gre6Tunnel.ipv6.addresses = mkOverride 0 [ + { address = "fc00::2"; prefixLength = 64; } + ]; }; } ]; @@ -562,6 +587,10 @@ let client1.wait_until_succeeds("ping -c 1 192.168.1.2") client2.wait_until_succeeds("ping -c 1 192.168.1.1") + + client1.wait_until_succeeds("ping -c 1 fc00::2") + + client2.wait_until_succeeds("ping -c 1 fc00::1") ''; }; vlan = let diff --git a/nixos/tests/nextcloud/default.nix b/nixos/tests/nextcloud/default.nix index 34d3c345354..b7b1c5c6600 100644 --- a/nixos/tests/nextcloud/default.nix +++ b/nixos/tests/nextcloud/default.nix @@ -18,4 +18,4 @@ foldl }; }) { } - [ 21 22 23 ] + [ 22 23 ] diff --git a/nixos/tests/pacemaker.nix b/nixos/tests/pacemaker.nix new file mode 100644 index 00000000000..68455761495 --- /dev/null +++ b/nixos/tests/pacemaker.nix @@ -0,0 +1,110 @@ +import ./make-test-python.nix ({ pkgs, lib, ... }: rec { + name = "pacemaker"; + meta = with pkgs.lib.maintainers; { + maintainers = [ astro ]; + }; + + nodes = + let + node = i: { + networking.interfaces.eth1.ipv4.addresses = [ { + address = "192.168.0.${toString i}"; + prefixLength = 24; + } ]; + + services.corosync = { + enable = true; + clusterName = "zentralwerk-network"; + nodelist = lib.imap (i: name: { + nodeid = i; + inherit name; + ring_addrs = [ + (builtins.head nodes.${name}.networking.interfaces.eth1.ipv4.addresses).address + ]; + }) (builtins.attrNames nodes); + }; + environment.etc."corosync/authkey" = { + source = builtins.toFile "authkey" + # minimum length: 128 bytes + "testtesttesttesttesttesttesttesttesttesttesttesttesttesttesttesttesttesttesttesttesttesttesttesttesttesttesttesttesttesttesttest"; + mode = "0400"; + }; + + services.pacemaker.enable = true; + + # used for pacemaker resource + systemd.services.ha-cat = { + description = "Highly available netcat"; + serviceConfig.ExecStart = "${pkgs.netcat}/bin/nc -l discard"; + }; + }; + in { + node1 = node 1; + node2 = node 2; + node3 = node 3; + }; + + # sets up pacemaker with resources configuration, then crashes a + # node and waits for service restart on another node + testScript = + let + resources = builtins.toFile "cib-resources.xml" '' + <resources> + <primitive id="cat" class="systemd" type="ha-cat"> + <operations> + <op id="stop-cat" name="start" interval="0" timeout="1s"/> + <op id="start-cat" name="start" interval="0" timeout="1s"/> + <op id="monitor-cat" name="monitor" interval="1s" timeout="1s"/> + </operations> + </primitive> + </resources> + ''; + in '' + import re + import time + + start_all() + + ${lib.concatMapStrings (node: '' + ${node}.wait_until_succeeds("corosync-quorumtool") + ${node}.wait_for_unit("pacemaker.service") + '') (builtins.attrNames nodes)} + + # No STONITH device + node1.succeed("crm_attribute -t crm_config -n stonith-enabled -v false") + # Configure the cat resource + node1.succeed("cibadmin --replace --scope resources --xml-file ${resources}") + + # wait until the service is started + while True: + output = node1.succeed("crm_resource -r cat --locate") + match = re.search("is running on: (.+)", output) + if match: + for machine in machines: + if machine.name == match.group(1): + current_node = machine + break + time.sleep(1) + + current_node.log("Service running here!") + current_node.crash() + + # pick another node that's still up + for machine in machines: + if machine.booted: + check_node = machine + # find where the service has been started next + while True: + output = check_node.succeed("crm_resource -r cat --locate") + match = re.search("is running on: (.+)", output) + # output will remain the old current_node until the crash is detected by pacemaker + if match and match.group(1) != current_node.name: + for machine in machines: + if machine.name == match.group(1): + next_node = machine + break + time.sleep(1) + + next_node.log("Service migrated here!") + ''; +}) diff --git a/nixos/tests/pleroma.nix b/nixos/tests/pleroma.nix index bf3623fce38..90a9a251104 100644 --- a/nixos/tests/pleroma.nix +++ b/nixos/tests/pleroma.nix @@ -32,8 +32,7 @@ import ./make-test-python.nix ({ pkgs, ... }: # system one. Overriding this pretty bad default behaviour. export REQUESTS_CA_BUNDLE=/etc/ssl/certs/ca-certificates.crt - export TOOT_LOGIN_CLI_PASSWORD="jamy-password" - toot login_cli -i "pleroma.nixos.test" -e "jamy@nixos.test" + echo "jamy-password" | toot login_cli -i "pleroma.nixos.test" -e "jamy@nixos.test" echo "Login OK" # Send a toot then verify it's part of the public timeline @@ -168,21 +167,6 @@ import ./make-test-python.nix ({ pkgs, ... }: cp key.pem cert.pem $out ''; - /* Toot is preventing users from feeding login_cli a password non - interactively. While it makes sense most of the times, it's - preventing us to login in this non-interactive test. This patch - introduce a TOOT_LOGIN_CLI_PASSWORD env variable allowing us to - provide a password to toot login_cli - - If https://github.com/ihabunek/toot/pull/180 gets merged at some - point, feel free to remove this patch. */ - custom-toot = pkgs.toot.overrideAttrs(old:{ - patches = [ (pkgs.fetchpatch { - url = "https://github.com/NinjaTrappeur/toot/commit/b4a4c30f41c0cb7e336714c2c4af9bc9bfa0c9f2.patch"; - sha256 = "sha256-0xxNwjR/fStLjjUUhwzCCfrghRVts+fc+fvVJqVcaFg="; - }) ]; - }); - hosts = nodes: '' ${nodes.pleroma.config.networking.primaryIPAddress} pleroma.nixos.test ${nodes.client.config.networking.primaryIPAddress} client.nixos.test @@ -194,7 +178,7 @@ import ./make-test-python.nix ({ pkgs, ... }: security.pki.certificateFiles = [ "${tls-cert}/cert.pem" ]; networking.extraHosts = hosts nodes; environment.systemPackages = with pkgs; [ - custom-toot + toot send-toot ]; }; diff --git a/nixos/tests/terminal-emulators.nix b/nixos/tests/terminal-emulators.nix new file mode 100644 index 00000000000..60161b80b96 --- /dev/null +++ b/nixos/tests/terminal-emulators.nix @@ -0,0 +1,207 @@ +# Terminal emulators all present a pretty similar interface. +# That gives us an opportunity to easily test their basic functionality with a single codebase. +# +# There are two tests run on each terminal emulator +# - can it successfully execute a command passed on the cmdline? +# - can it successfully display a colour? +# the latter is used as a proxy for "can it display text?", without going through all the intricacies of OCR. +# +# 256-colour terminal mode is used to display the test colour, since it has a universally-applicable palette (unlike 8- and 16- colour, where the colours are implementation-defined), and it is widely supported (unlike 24-bit colour). +# +# Future work: +# - Wayland support (both for testing the existing terminals, and for testing wayland-only terminals like foot and havoc) +# - Test keyboard input? (skipped for now, to eliminate the possibility of race conditions and focus issues) + +{ system ? builtins.currentSystem, + config ? {}, + pkgs ? import ../.. { inherit system config; } +}: + +with import ../lib/testing-python.nix { inherit system pkgs; }; +with pkgs.lib; + +let tests = { + alacritty.pkg = p: p.alacritty; + + contour.pkg = p: p.contour; + contour.cmd = "contour $command"; + + cool-retro-term.pkg = p: p.cool-retro-term; + cool-retro-term.colourTest = false; # broken by gloss effect + + ctx.pkg = p: p.ctx; + ctx.pinkValue = "#FE0065"; + + darktile.pkg = p: p.darktile; + + eterm.pkg = p: p.eterm; + eterm.executable = "Eterm"; + eterm.pinkValue = "#D40055"; + + germinal.pkg = p: p.germinal; + + gnome-terminal.pkg = p: p.gnome.gnome-terminal; + + guake.pkg = p: p.guake; + guake.cmd = "SHELL=$command guake --show"; + guake.kill = true; + + hyper.pkg = p: p.hyper; + + kermit.pkg = p: p.kermit-terminal; + + kgx.pkg = p: p.kgx; + kgx.cmd = "kgx -e $command"; + kgx.kill = true; + + kitty.pkg = p: p.kitty; + kitty.cmd = "kitty $command"; + + konsole.pkg = p: p.plasma5Packages.konsole; + + lxterminal.pkg = p: p.lxterminal; + + mate-terminal.pkg = p: p.mate.mate-terminal; + mate-terminal.cmd = "SHELL=$command mate-terminal --disable-factory"; # factory mode uses dbus, and we don't have a proper dbus session set up + + mlterm.pkg = p: p.mlterm; + + mrxvt.pkg = p: p.mrxvt; + + qterminal.pkg = p: p.lxqt.qterminal; + qterminal.kill = true; + + roxterm.pkg = p: p.roxterm; + roxterm.cmd = "roxterm -e $command"; + + sakura.pkg = p: p.sakura; + + st.pkg = p: p.st; + st.kill = true; + + stupidterm.pkg = p: p.stupidterm; + stupidterm.cmd = "stupidterm -- $command"; + + terminator.pkg = p: p.terminator; + terminator.cmd = "terminator -e $command"; + + terminology.pkg = p: p.enlightenment.terminology; + terminology.cmd = "SHELL=$command terminology --no-wizard=true"; + terminology.colourTest = false; # broken by gloss effect + + termite.pkg = p: p.termite; + + termonad.pkg = p: p.termonad; + + tilda.pkg = p: p.tilda; + + tilix.pkg = p: p.tilix; + tilix.cmd = "tilix -e $command"; + + urxvt.pkg = p: p.rxvt-unicode; + + wayst.pkg = p: p.wayst; + wayst.pinkValue = "#FF0066"; + + wezterm.pkg = p: p.wezterm; + + xfce4-terminal.pkg = p: p.xfce.xfce4-terminal; + + xterm.pkg = p: p.xterm; + }; +in mapAttrs (name: { pkg, executable ? name, cmd ? "SHELL=$command ${executable}", colourTest ? true, pinkValue ? "#FF0087", kill ? false }: makeTest +{ + name = "terminal-emulator-${name}"; + meta = with pkgs.stdenv.lib.maintainers; { + maintainers = [ jjjollyjim ]; + }; + + machine = { pkgsInner, ... }: + + { + imports = [ ./common/x11.nix ./common/user-account.nix ]; + + # Hyper (and any other electron-based terminals) won't run as root + test-support.displayManager.auto.user = "alice"; + + environment.systemPackages = [ + (pkg pkgs) + (pkgs.writeShellScriptBin "report-success" '' + echo 1 > /tmp/term-ran-successfully + ${optionalString kill "pkill ${executable}"} + '') + (pkgs.writeShellScriptBin "display-colour" '' + # A 256-colour background colour code for pink, then spaces. + # + # Background is used rather than foreground to minimize the effect of anti-aliasing. + # + # Keep adding more in case the window is partially offscreen to the left or requires + # a change to correctly redraw after initialising the window (as with ctx). + + while : + do + echo -ne "\e[48;5;198m " + sleep 0.5 + done + sleep infinity + '') + (pkgs.writeShellScriptBin "run-in-this-term" "sudo -u alice run-in-this-term-wrapped $1") + + (pkgs.writeShellScriptBin "run-in-this-term-wrapped" "command=\"$(which \"$1\")\"; ${cmd}") + ]; + + # Helpful reminder to add this test to passthru.tests + warnings = if !((pkg pkgs) ? "passthru" && (pkg pkgs).passthru ? "tests") then [ "The package for ${name} doesn't have a passthru.tests" ] else [ ]; + }; + + # We need imagemagick, though not tesseract + enableOCR = true; + + testScript = { nodes, ... }: let + in '' + with subtest("wait for x"): + start_all() + machine.wait_for_x() + + with subtest("have the terminal run a command"): + # We run this command synchronously, so we can be certain the exit codes are happy + machine.${if kill then "execute" else "succeed"}("run-in-this-term report-success") + machine.wait_for_file("/tmp/term-ran-successfully") + ${optionalString colourTest '' + + import tempfile + import subprocess + + + def check_for_pink(final=False) -> bool: + with tempfile.NamedTemporaryFile() as tmpin: + machine.send_monitor_command("screendump {}".format(tmpin.name)) + + cmd = 'convert {} -define histogram:unique-colors=true -format "%c" histogram:info:'.format( + tmpin.name + ) + ret = subprocess.run(cmd, shell=True, capture_output=True) + if ret.returncode != 0: + raise Exception( + "image analysis failed with exit code {}".format(ret.returncode) + ) + + text = ret.stdout.decode("utf-8") + return "${pinkValue}" in text + + + with subtest("ensuring no pink is present without the terminal"): + assert ( + check_for_pink() == False + ), "Pink was present on the screen before we even launched a terminal!" + + with subtest("have the terminal display a colour"): + # We run this command in the background + machine.shell.send(b"(run-in-this-term display-colour |& systemd-cat -t terminal) &\n") + + with machine.nested("Waiting for the screen to have pink on it:"): + retry(check_for_pink) + ''}''; +} + + ) tests diff --git a/nixos/tests/web-apps/peertube.nix b/nixos/tests/web-apps/peertube.nix index 38b31f6c332..706c598338e 100644 --- a/nixos/tests/web-apps/peertube.nix +++ b/nixos/tests/web-apps/peertube.nix @@ -120,6 +120,9 @@ import ../make-test-python.nix ({pkgs, ...}: # Check if PeerTube is running client.succeed("curl --fail http://peertube.local:9000/api/v1/config/about | jq -r '.instance.name' | grep 'PeerTube\ Test\ Server'") + # Check PeerTube CLI version + assert "${pkgs.peertube.version}" in server.succeed('su - peertube -s /bin/sh -c "peertube --version"') + client.shutdown() server.shutdown() database.shutdown() diff --git a/nixos/tests/wine.nix b/nixos/tests/wine.nix index cc449864c76..8135cb90a59 100644 --- a/nixos/tests/wine.nix +++ b/nixos/tests/wine.nix @@ -3,7 +3,7 @@ }: let - inherit (pkgs.lib) concatMapStrings listToAttrs; + inherit (pkgs.lib) concatMapStrings listToAttrs optionals optionalString; inherit (import ../lib/testing-python.nix { inherit system pkgs; }) makeTest; hello32 = "${pkgs.pkgsCross.mingw32.hello}/bin/hello.exe"; @@ -27,6 +27,9 @@ let "bash -c 'wine ${exe} 2> >(tee wine-stderr >&2)'" ) assert 'Hello, world!' in greeting + '' + # only the full version contains Gecko, but the error is not printed reliably in other variants + + optionalString (variant == "full") '' machine.fail( "fgrep 'Could not find Wine Gecko. HTML rendering will be disabled.' wine-stderr" ) @@ -37,5 +40,9 @@ let variants = [ "base" "full" "minimal" "staging" "unstable" "wayland" ]; -in listToAttrs (map (makeWineTest "winePackages" [ hello32 ]) variants - ++ map (makeWineTest "wineWowPackages" [ hello32 hello64 ]) variants) +in +listToAttrs ( + map (makeWineTest "winePackages" [ hello32 ]) variants + ++ optionals pkgs.stdenv.is64bit + (map (makeWineTest "wineWowPackages" [ hello32 hello64 ]) variants) +) diff --git a/nixos/tests/xmpp/prosody-mysql.nix b/nixos/tests/xmpp/prosody-mysql.nix new file mode 100644 index 00000000000..40f3e308a04 --- /dev/null +++ b/nixos/tests/xmpp/prosody-mysql.nix @@ -0,0 +1,124 @@ +let + cert = pkgs: pkgs.runCommand "selfSignedCerts" { buildInputs = [ pkgs.openssl ]; } '' + openssl req -x509 -newkey rsa:4096 -keyout key.pem -out cert.pem -nodes -subj '/CN=example.com/CN=uploads.example.com/CN=conference.example.com' -days 36500 + mkdir -p $out + cp key.pem cert.pem $out + ''; + createUsers = pkgs: pkgs.writeScriptBin "create-prosody-users" '' + #!${pkgs.bash}/bin/bash + set -e + + # Creates and set password for the 2 xmpp test users. + # + # Doing that in a bash script instead of doing that in the test + # script allow us to easily provision the users when running that + # test interactively. + + prosodyctl register cthon98 example.com nothunter2 + prosodyctl register azurediamond example.com hunter2 + ''; + delUsers = pkgs: pkgs.writeScriptBin "delete-prosody-users" '' + #!${pkgs.bash}/bin/bash + set -e + + # Deletes the test users. + # + # Doing that in a bash script instead of doing that in the test + # script allow us to easily provision the users when running that + # test interactively. + + prosodyctl deluser cthon98@example.com + prosodyctl deluser azurediamond@example.com + ''; +in import ../make-test-python.nix { + name = "prosody-mysql"; + nodes = { + client = { nodes, pkgs, config, ... }: { + security.pki.certificateFiles = [ "${cert pkgs}/cert.pem" ]; + console.keyMap = "fr-bepo"; + networking.extraHosts = '' + ${nodes.server.config.networking.primaryIPAddress} example.com + ${nodes.server.config.networking.primaryIPAddress} conference.example.com + ${nodes.server.config.networking.primaryIPAddress} uploads.example.com + ''; + environment.systemPackages = [ + (pkgs.callPackage ./xmpp-sendmessage.nix { connectTo = nodes.server.config.networking.primaryIPAddress; }) + ]; + }; + server = { config, pkgs, ... }: { + nixpkgs.overlays = [ + (self: super: { + prosody = super.prosody.override { + withExtraLuaPackages = p: [ p.luadbi-mysql ]; + }; + }) + ]; + security.pki.certificateFiles = [ "${cert pkgs}/cert.pem" ]; + console.keyMap = "fr-bepo"; + networking.extraHosts = '' + ${config.networking.primaryIPAddress} example.com + ${config.networking.primaryIPAddress} conference.example.com + ${config.networking.primaryIPAddress} uploads.example.com + ''; + networking.firewall.enable = false; + environment.systemPackages = [ + (createUsers pkgs) + (delUsers pkgs) + ]; + services.prosody = { + enable = true; + ssl.cert = "${cert pkgs}/cert.pem"; + ssl.key = "${cert pkgs}/key.pem"; + virtualHosts.example = { + domain = "example.com"; + enabled = true; + ssl.cert = "${cert pkgs}/cert.pem"; + ssl.key = "${cert pkgs}/key.pem"; + }; + muc = [ + { + domain = "conference.example.com"; + } + ]; + uploadHttp = { + domain = "uploads.example.com"; + }; + extraConfig = '' + storage = "sql" + sql = { + driver = "MySQL"; + database = "prosody"; + host = "mysql"; + port = 3306; + username = "prosody"; + password = "password123"; + }; + ''; + }; + }; + mysql = { config, pkgs, ... }: { + networking.firewall.enable = false; + services.mysql = { + enable = true; + initialScript = pkgs.writeText "mysql_init.sql" '' + CREATE DATABASE prosody; + CREATE USER 'prosody'@'server' IDENTIFIED BY 'password123'; + GRANT ALL PRIVILEGES ON prosody.* TO 'prosody'@'server'; + FLUSH PRIVILEGES; + ''; + package = pkgs.mariadb; + }; + }; + }; + + testScript = { nodes, ... }: '' + # Check with mysql storage + mysql.wait_for_unit("mysql.service") + server.wait_for_unit("prosody.service") + server.succeed('prosodyctl status | grep "Prosody is running"') + + server.succeed("create-prosody-users") + client.succeed("send-message") + server.succeed("delete-prosody-users") + ''; +} diff --git a/nixos/tests/xmpp/prosody.nix b/nixos/tests/xmpp/prosody.nix index c343b580879..14eab56fb82 100644 --- a/nixos/tests/xmpp/prosody.nix +++ b/nixos/tests/xmpp/prosody.nix @@ -81,6 +81,7 @@ in import ../make-test-python.nix { }; testScript = { nodes, ... }: '' + # Check with sqlite storage server.wait_for_unit("prosody.service") server.succeed('prosodyctl status | grep "Prosody is running"') diff --git a/pkgs/applications/audio/furnace/default.nix b/pkgs/applications/audio/furnace/default.nix new file mode 100644 index 00000000000..e7794175ac9 --- /dev/null +++ b/pkgs/applications/audio/furnace/default.nix @@ -0,0 +1,99 @@ +{ stdenv +, lib +, nix-update-script +, fetchFromGitHub +, fetchpatch +, cmake +, pkg-config +, makeWrapper +, fmt_8 +, libsndfile +, SDL2 +, zlib +, withJACK ? stdenv.hostPlatform.isUnix +, libjack2 +, withGUI ? true +, Cocoa +}: + +stdenv.mkDerivation rec { + pname = "furnace"; + version = "0.5.6"; + + src = fetchFromGitHub { + owner = "tildearrow"; + repo = "furnace"; + rev = "v${version}"; + fetchSubmodules = true; + sha256 = "sha256-BcaPQuDFkAaxFQKwoI6xdSWcyHo5VsqZcwf++JISqRs="; + }; + + patches = [ + (fetchpatch { + name = "0001-furnace-fix-wrong-include-path.patch"; + url = "https://github.com/tildearrow/furnace/commit/456db22f9d9f0ed40d74fe50dde492e69e901fcc.patch"; + sha256 = "17ikb1z9ldm7kdj00m4swsrq1qx94vlzhc6h020x3ryzwnglc8d3"; + }) + ]; + + postPatch = '' + # rtmidi is not used yet + sed -i -e '/add_subdirectory(extern\/rtmidi/d' -e '/DEPENDENCIES_LIBRARIES rtmidi/d' CMakeLists.txt + ''; + + nativeBuildInputs = [ + cmake + pkg-config + ] ++ lib.optionals stdenv.hostPlatform.isDarwin [ + makeWrapper + ]; + + buildInputs = [ + fmt_8 + libsndfile + SDL2 + zlib + ] ++ lib.optionals withJACK [ + libjack2 + ] ++ lib.optionals stdenv.hostPlatform.isDarwin [ + Cocoa + ]; + + cmakeFlags = [ + "-DBUILD_GUI=${if withGUI then "ON" else "OFF"}" + "-DSYSTEM_FMT=ON" + "-DSYSTEM_LIBSNDFILE=ON" + "-DSYSTEM_ZLIB=ON" + "-DSYSTEM_SDL2=ON" + "-DWITH_JACK=${if withJACK then "ON" else "OFF"}" + "-DWARNINGS_ARE_ERRORS=ON" + ]; + + postInstall = lib.optionalString stdenv.hostPlatform.isDarwin '' + # Normal CMake install phase on Darwin only installs the binary, the user is expected to use CPack to build a + # bundle. That adds alot of overhead for not much benefit (CPack is currently abit broken, and needs impure access + # to /usr/bin/hdiutil). So we'll manually assemble & install everything instead. + + mkdir -p $out/{Applications/Furnace.app/Contents/{MacOS,Resources},share/{,doc,licenses}/furnace} + mv $out/{bin,Applications/Furnace.app/Contents/MacOS}/furnace + makeWrapper $out/{Applications/Furnace.app/Contents/MacOS,bin}/furnace + + install -m644 {../res,$out/Applications/Furnace.app/Contents}/Info.plist + install -m644 ../res/icon.icns $out/Applications/Furnace.app/Contents/Resources/Furnace.icns + install -m644 {..,$out/share/licenses/furnace}/LICENSE + cp -r ../papers $out/share/doc/furnace/ + cp -r ../demos $out/share/furnace/ + ''; + + passthru.updateScript = nix-update-script { + attrPath = pname; + }; + + meta = with lib; { + description = "Multi-system chiptune tracker compatible with DefleMask modules"; + homepage = "https://github.com/tildearrow/furnace"; + license = with licenses; [ gpl2Plus ]; + maintainers = with maintainers; [ OPNA2608 ]; + platforms = platforms.all; + }; +} diff --git a/pkgs/applications/audio/mopidy/ytmusic.nix b/pkgs/applications/audio/mopidy/ytmusic.nix index 92b75414785..9f393a0e752 100644 --- a/pkgs/applications/audio/mopidy/ytmusic.nix +++ b/pkgs/applications/audio/mopidy/ytmusic.nix @@ -2,24 +2,33 @@ python3Packages.buildPythonApplication rec { pname = "mopidy-ytmusic"; - version = "0.3.2"; + version = "0.3.5"; src = python3Packages.fetchPypi { inherit version; pname = "Mopidy-YTMusic"; - sha256 = "sha256-BZtW+qHsTnOMj+jdAFI8ZMwGxJc9lNosgPJZGbt4JgU="; + sha256 = "0pncyxfqxvznb9y4ksndbny1yf5mxh4089ak0yz86dp2qi5j99iv"; }; + postPatch = '' + substituteInPlace setup.py \ + --replace 'ytmusicapi>=0.20.0,<0.21.0' 'ytmusicapi>=0.20.0' + ''; + propagatedBuildInputs = [ mopidy python3Packages.ytmusicapi python3Packages.pytube ]; + pythonImportsCheck = [ "mopidy_ytmusic" ]; + + # has no tests doCheck = false; meta = with lib; { description = "Mopidy extension for playing music from YouTube Music"; + homepage = "https://github.com/OzymandiasTheGreat/mopidy-ytmusic"; license = licenses.asl20; maintainers = [ maintainers.nickhu ]; }; diff --git a/pkgs/applications/audio/pt2-clone/default.nix b/pkgs/applications/audio/pt2-clone/default.nix index 57c327d429d..2577f61e8d5 100644 --- a/pkgs/applications/audio/pt2-clone/default.nix +++ b/pkgs/applications/audio/pt2-clone/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { pname = "pt2-clone"; - version = "1.42"; + version = "1.43"; src = fetchFromGitHub { owner = "8bitbubsy"; repo = "pt2-clone"; rev = "v${version}"; - sha256 = "sha256-CwnEvQsxrYStJ4RxnE0lHt1fBHQEZrjSldnQnTOPaE0="; + sha256 = "sha256-+sHGjgDqizv/9n0dDj8knsl+4MBfO3/pMkmD+MPsuNM="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/applications/audio/pyradio/default.nix b/pkgs/applications/audio/pyradio/default.nix index e95e5d9c6d1..ebddac8c539 100644 --- a/pkgs/applications/audio/pyradio/default.nix +++ b/pkgs/applications/audio/pyradio/default.nix @@ -2,7 +2,7 @@ python3Packages.buildPythonApplication rec { pname = "pyradio"; - version = "0.8.9.14"; + version = "0.8.9.15"; propagatedBuildInputs = with python3Packages; [ requests @@ -14,7 +14,7 @@ python3Packages.buildPythonApplication rec { owner = "coderholic"; repo = pname; rev = version; - sha256 = "sha256-9q+YsQPFB7Ql5WnXvPj100cD7pGkmr1hHztqbpZStt8="; + sha256 = "sha256-r4T7t8Q46N59jqTkvdKBo6tffkrOYhoO/CZWvkBHOAQ="; }; checkPhase = '' diff --git a/pkgs/applications/audio/sunvox/default.nix b/pkgs/applications/audio/sunvox/default.nix index b6a60c0de64..503079b9ed4 100644 --- a/pkgs/applications/audio/sunvox/default.nix +++ b/pkgs/applications/audio/sunvox/default.nix @@ -13,11 +13,11 @@ let in stdenv.mkDerivation rec { pname = "SunVox"; - version = "2.0c"; + version = "2.0e"; src = fetchurl { - url = "http://www.warmplace.ru/soft/sunvox/sunvox-${version}.zip"; - sha256 = "949e5348da9faa92ce17aac943b58027bdb797b65c7f5f365ef0610bb6dd8a3d"; + url = "https://www.warmplace.ru/soft/sunvox/sunvox-${version}.zip"; + sha256 = "sha256-v4dQnRr7pusOAHX8ytDChKixYxEIjg30vOTD6uA/S0o="; }; nativeBuildInputs = [ unzip ]; diff --git a/pkgs/applications/audio/vocal/default.nix b/pkgs/applications/audio/vocal/default.nix index 3d6f3aef9e1..0c80dda703e 100644 --- a/pkgs/applications/audio/vocal/default.nix +++ b/pkgs/applications/audio/vocal/default.nix @@ -56,7 +56,6 @@ stdenv.mkDerivation rec { libgee libnotify libunity - pantheon.elementary-icon-theme pantheon.granite sqlite webkitgtk @@ -73,6 +72,13 @@ stdenv.mkDerivation rec { }) ]; + postPatch = '' + # Fix build with vala 0.56 + # https://github.com/needle-and-thread/vocal/pull/503 + substituteInPlace src/Vocal.vala \ + --replace "public const OptionEntry[] app_options" "private const OptionEntry[] app_options" + ''; + passthru = { updateScript = nix-update-script { attrPath = pname; diff --git a/pkgs/applications/blockchains/alfis/default.nix b/pkgs/applications/blockchains/alfis/default.nix index 2c8526c6292..28ce7512129 100644 --- a/pkgs/applications/blockchains/alfis/default.nix +++ b/pkgs/applications/blockchains/alfis/default.nix @@ -14,16 +14,16 @@ rustPlatform.buildRustPackage rec { pname = "alfis"; - version = "0.6.10"; + version = "0.6.11"; src = fetchFromGitHub { owner = "Revertron"; repo = "Alfis"; rev = "v${version}"; - sha256 = "sha256-JJTU3wZ3cG5TmgHYShWJaNAZBA4z3qZXPfb7WUX6/80="; + sha256 = "sha256-vm/JBJh58UaSem18RpJuPUzM2GCy4RfCb6Hr1B7KWQA="; }; - cargoSha256 = "sha256-BsFe1Fp+Q5Gqa1w4xov0tVLDKV7S+6b5fKBl09ggLB0="; + cargoSha256 = "sha256-8ijGO8up0qVQ/kVX5/DveKyovYLh7jm+d7vooS1waAA="; checkFlags = [ # these want internet access, disable them diff --git a/pkgs/applications/blockchains/chia/default.nix b/pkgs/applications/blockchains/chia/default.nix index f912ef41677..e8527559c3a 100644 --- a/pkgs/applications/blockchains/chia/default.nix +++ b/pkgs/applications/blockchains/chia/default.nix @@ -6,14 +6,14 @@ let chia = python3Packages.buildPythonApplication rec { pname = "chia"; - version = "1.3.0"; + version = "1.3.1"; src = fetchFromGitHub { owner = "Chia-Network"; repo = "chia-blockchain"; rev = version; fetchSubmodules = true; - hash = "sha256-eUvZc/7gqGkCB2tNKdwqKOmOgEcG9a/7TSvvyQzhNcQ="; + hash = "sha256-nH6rCzIQu5oWsdEHa+UkvbWeUGjrtpEKVEcLmSoor5k="; }; postPatch = '' @@ -50,6 +50,7 @@ let chia = python3Packages.buildPythonApplication rec { dnslib dnspythonchia fasteners + filelock keyrings-cryptfile pyyaml setproctitle diff --git a/pkgs/applications/editors/cudatext/default.nix b/pkgs/applications/editors/cudatext/default.nix index 2b58ba50bca..510873f200e 100644 --- a/pkgs/applications/editors/cudatext/default.nix +++ b/pkgs/applications/editors/cudatext/default.nix @@ -38,13 +38,13 @@ let in stdenv.mkDerivation rec { pname = "cudatext"; - version = "1.156.2"; + version = "1.158.2"; src = fetchFromGitHub { owner = "Alexey-T"; repo = "CudaText"; rev = version; - sha256 = "sha256-waVTNyK3OHpOvBJrXio+Xjn9q3WmUczbx3E26ChsuKo="; + sha256 = "sha256-YrRG+LaG39q/6Ry3cXo9XUwtvokkBl96XuQfE22QxZI="; }; postPatch = '' diff --git a/pkgs/applications/editors/cudatext/deps.json b/pkgs/applications/editors/cudatext/deps.json index 9ae3c1c33ca..5e0f37c78b6 100644 --- a/pkgs/applications/editors/cudatext/deps.json +++ b/pkgs/applications/editors/cudatext/deps.json @@ -1,23 +1,23 @@ { "EncConv": { "owner": "Alexey-T", - "rev": "2021.01.01", - "sha256": "18fp7yz2rl80a6xw7v4bgc4092l74fb6p6z4yf312r7gw7b8naq6" + "rev": "2022.03.02", + "sha256": "sha256-fBN6Ix5CqhzMbNrWGn6nw6+JRDmEfqe6o8JGHERkiPE=" }, "ATBinHex-Lazarus": { "owner": "Alexey-T", - "rev": "2021.07.02", - "sha256": "sha256-XSt2XfHMiF/ZIf07M65u+k5FjacyToL0rWbpcflKcuY=" + "rev": "2021.11.17", + "sha256": "sha256-wdYH0sISFNx42zt07gLn9ANxcyrq3WrbRhWfTFgPQWw=" }, "ATFlatControls": { "owner": "Alexey-T", - "rev": "2021.11.11", - "sha256": "sha256-lbRRiA8CHWmosJefTHrP2cTgU8nlK1SmNcppG6Bl54I=" + "rev": "2022.03.17", + "sha256": "sha256-zpirFZcqIT53tZhgxQGdwVB6pA98SQLr1o3f+Lhq2QY=" }, "ATSynEdit": { "owner": "Alexey-T", - "rev": "2022.02.19", - "sha256": "sha256-cq2dirFNPaWRmZJu0F+CFA//+SuFOOpTH3Q5zL4oPQo=" + "rev": "2022.03.17", + "sha256": "sha256-aJZGHodydkqfe2BJLKWUzIX6vbdiGKs4z5ZqtteM6NU=" }, "ATSynEdit_Cmp": { "owner": "Alexey-T", @@ -26,13 +26,13 @@ }, "EControl": { "owner": "Alexey-T", - "rev": "2022.02.02", - "sha256": "sha256-T/6SQJHKzbv/PlObDyc9bcpC14krHgcLDQn0v2fNkLM=" + "rev": "2022.03.17", + "sha256": "sha256-sWRKRhUYf07TIrVWRqtpsYPZu0dPm0EhSIqoDLmkG0Y=" }, "ATSynEdit_Ex": { "owner": "Alexey-T", - "rev": "2022.02.01", - "sha256": "sha256-FAcq6ixmFPQFBAGG2gqB4T+YGYT+Rh/OlKdGcH/iL3g=" + "rev": "2022.03.17", + "sha256": "sha256-FndLHJuCOyFr0IGUL4zFRjkEvTyNF3tHUO/Wx5IaV2Y=" }, "Python-for-Lazarus": { "owner": "Alexey-T", diff --git a/pkgs/applications/editors/ed/default.nix b/pkgs/applications/editors/ed/default.nix index a6ab483a7b0..f5ed28cedf6 100644 --- a/pkgs/applications/editors/ed/default.nix +++ b/pkgs/applications/editors/ed/default.nix @@ -8,11 +8,11 @@ stdenv.mkDerivation (rec { pname = "ed"; - version = "1.17"; + version = "1.18"; src = fetchurl { url = "mirror://gnu/ed/${pname}-${version}.tar.lz"; - sha256 = "0m2yrkfjjraakxr98nsiakqrn351h99n706x9asgmdi57j43kpki"; + sha256 = "sha256-rKjvrZgAxYdySiC5eqj8R+a1pH34Fgb+q6gxsHRGK08="; }; nativeBuildInputs = [ lzip ]; diff --git a/pkgs/applications/editors/emacs/elisp-packages/elpa-generated.nix b/pkgs/applications/editors/emacs/elisp-packages/elpa-generated.nix index 54bcc3a7c06..d11ed899bc1 100644 --- a/pkgs/applications/editors/emacs/elisp-packages/elpa-generated.nix +++ b/pkgs/applications/editors/emacs/elisp-packages/elpa-generated.nix @@ -425,6 +425,21 @@ license = lib.licenses.free; }; }) {}; + buffer-env = callPackage ({ elpaBuild, emacs, fetchurl, lib }: + elpaBuild { + pname = "buffer-env"; + ename = "buffer-env"; + version = "0.2"; + src = fetchurl { + url = "https://elpa.gnu.org/packages/buffer-env-0.2.tar"; + sha256 = "1420qln8ww43d6gs70cnxab6lf10dhmk5yk29pwsvjk86afhwhwf"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/buffer-env.html"; + license = lib.licenses.free; + }; + }) {}; buffer-expose = callPackage ({ cl-lib ? null , elpaBuild , emacs @@ -463,10 +478,10 @@ elpaBuild { pname = "cape"; ename = "cape"; - version = "0.6"; + version = "0.7"; src = fetchurl { - url = "https://elpa.gnu.org/packages/cape-0.6.tar"; - sha256 = "0pc0vvdb0pczz9n50wry6k6wkdaz3bqin07nmlxm8w1aqvapb2pr"; + url = "https://elpa.gnu.org/packages/cape-0.7.tar"; + sha256 = "1icgd5d55x7x7czw349v8m19mgq4yrx6j6zhbb666h2hdkbnykbg"; }; packageRequires = [ emacs ]; meta = { @@ -609,6 +624,21 @@ license = lib.licenses.free; }; }) {}; + code-cells = callPackage ({ elpaBuild, emacs, fetchurl, lib }: + elpaBuild { + pname = "code-cells"; + ename = "code-cells"; + version = "0.2"; + src = fetchurl { + url = "https://elpa.gnu.org/packages/code-cells-0.2.tar"; + sha256 = "19v6a7l23646diazl0rzjxjsam12hm08hgyq8hdcc7l3xl840ghk"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/code-cells.html"; + license = lib.licenses.free; + }; + }) {}; coffee-mode = callPackage ({ elpaBuild, fetchurl, lib }: elpaBuild { pname = "coffee-mode"; @@ -711,10 +741,10 @@ elpaBuild { pname = "consult"; ename = "consult"; - version = "0.15"; + version = "0.16"; src = fetchurl { - url = "https://elpa.gnu.org/packages/consult-0.15.tar"; - sha256 = "0hsmxaiadb8smi1hk90n9napqrygh9rvj7g9a3d9isi47yrbg693"; + url = "https://elpa.gnu.org/packages/consult-0.16.tar"; + sha256 = "172w4d9hbzj98j1gyfhzw2zz4fpw90ak8ccg35fngwjlk9mjdrzk"; }; packageRequires = [ emacs ]; meta = { @@ -741,10 +771,10 @@ elpaBuild { pname = "corfu"; ename = "corfu"; - version = "0.19"; + version = "0.20"; src = fetchurl { - url = "https://elpa.gnu.org/packages/corfu-0.19.tar"; - sha256 = "0jilhsddzjm0is7kqdklpr2ih50k2c3sik2i9vlgcizxqaqss97c"; + url = "https://elpa.gnu.org/packages/corfu-0.20.tar"; + sha256 = "03yycimbqs4ixz7lxp7f1b4fipq6kl2bbjnl87r0n9x8mzfslbdl"; }; packageRequires = [ emacs ]; meta = { @@ -756,10 +786,10 @@ elpaBuild { pname = "coterm"; ename = "coterm"; - version = "1.4"; + version = "1.5"; src = fetchurl { - url = "https://elpa.gnu.org/packages/coterm-1.4.tar"; - sha256 = "0cs9hqffkzlkkpcfhdh67gg3vzvffrjawmi89q7x9p52fk9rcxp6"; + url = "https://elpa.gnu.org/packages/coterm-1.5.tar"; + sha256 = "1v8cl3bw5z0f36iw8x3gcgiizml74m1kfxfrasyfx8k01nbxcfs8"; }; packageRequires = [ emacs ]; meta = { @@ -921,10 +951,10 @@ elpaBuild { pname = "debbugs"; ename = "debbugs"; - version = "0.30"; + version = "0.31"; src = fetchurl { - url = "https://elpa.gnu.org/packages/debbugs-0.30.tar"; - sha256 = "05yy1hhxd59rhricb14iai71w681222sv0i703yrgg868mphl7sb"; + url = "https://elpa.gnu.org/packages/debbugs-0.31.tar"; + sha256 = "11vdjrn5m5g6pirw8jv0602fbwwgdhazfrrwxxplii8x02gqk0sr"; }; packageRequires = [ emacs soap-client ]; meta = { @@ -1127,16 +1157,16 @@ license = lib.licenses.free; }; }) {}; - dts-mode = callPackage ({ elpaBuild, fetchurl, lib }: + dts-mode = callPackage ({ elpaBuild, emacs, fetchurl, lib }: elpaBuild { pname = "dts-mode"; ename = "dts-mode"; - version = "0.1.1"; + version = "1.0"; src = fetchurl { - url = "https://elpa.gnu.org/packages/dts-mode-0.1.1.tar"; - sha256 = "1hdbf7snfbg3pfg1vhbak1gq5smaklvaqj1y9mjcnxyipqi47q28"; + url = "https://elpa.gnu.org/packages/dts-mode-1.0.tar"; + sha256 = "0ihwqkv1ddysjgxh01vpayv3ia0vx55ny8ym0mi5b4iz95idj60s"; }; - packageRequires = []; + packageRequires = [ emacs ]; meta = { homepage = "https://elpa.gnu.org/packages/dts-mode.html"; license = lib.licenses.free; @@ -1236,10 +1266,10 @@ elpaBuild { pname = "eev"; ename = "eev"; - version = "20220224"; + version = "20220316"; src = fetchurl { - url = "https://elpa.gnu.org/packages/eev-20220224.tar"; - sha256 = "008750fm7w5k9yrkwyxgank02smxki2857cd2d8qvhsa2qnz6c5n"; + url = "https://elpa.gnu.org/packages/eev-20220316.tar"; + sha256 = "1ax487ca2rsq6ck2g0694fq3z7a89dy4pcns15wd7ygkf3a4sykf"; }; packageRequires = [ emacs ]; meta = { @@ -1354,10 +1384,10 @@ elpaBuild { pname = "embark"; ename = "embark"; - version = "0.15"; + version = "0.16"; src = fetchurl { - url = "https://elpa.gnu.org/packages/embark-0.15.tar"; - sha256 = "0dr97549xrs9j1fhnqpdspvbfxnzqvzvpi8qc91fd2v4jsfwlklh"; + url = "https://elpa.gnu.org/packages/embark-0.16.tar"; + sha256 = "1fgsy4nqwl1cah287fbabpi9lwmbiyn36c4z918514iwr5hgrmfi"; }; packageRequires = [ emacs ]; meta = { @@ -1374,10 +1404,10 @@ elpaBuild { pname = "embark-consult"; ename = "embark-consult"; - version = "0.4"; + version = "0.5"; src = fetchurl { - url = "https://elpa.gnu.org/packages/embark-consult-0.4.tar"; - sha256 = "1z0xc11y59lagfsd2raps4iz68hvw132ff0qynbmvgw63mp1w4yy"; + url = "https://elpa.gnu.org/packages/embark-consult-0.5.tar"; + sha256 = "1z4n5gm30yan3gg2aqwb1ygql56v9sg2px1dr0gdl32lgmn9kvg6"; }; packageRequires = [ consult emacs embark ]; meta = { @@ -2419,6 +2449,21 @@ license = lib.licenses.free; }; }) {}; + logos = callPackage ({ elpaBuild, emacs, fetchurl, lib }: + elpaBuild { + pname = "logos"; + ename = "logos"; + version = "0.2.0"; + src = fetchurl { + url = "https://elpa.gnu.org/packages/logos-0.2.0.tar"; + sha256 = "0cqmgvgyyn656rg60bbnxr2flmnw9h4z5i2w98bsf4krlp3s4i6x"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/logos.html"; + license = lib.licenses.free; + }; + }) {}; map = callPackage ({ elpaBuild, emacs, fetchurl, lib }: elpaBuild { pname = "map"; @@ -2438,10 +2483,10 @@ elpaBuild { pname = "marginalia"; ename = "marginalia"; - version = "0.12"; + version = "0.13"; src = fetchurl { - url = "https://elpa.gnu.org/packages/marginalia-0.12.tar"; - sha256 = "01dy9dg2ac6s84ffcxn2pw1y75pinkdvxg1j2g3vijwjd5hpfakq"; + url = "https://elpa.gnu.org/packages/marginalia-0.13.tar"; + sha256 = "1d5y3d2plkxnmm4458l0gfpim6q3vzps3bsfakvnzf86hh5nm77j"; }; packageRequires = [ emacs ]; meta = { @@ -3006,6 +3051,21 @@ license = lib.licenses.free; }; }) {}; + org-modern = callPackage ({ elpaBuild, emacs, fetchurl, lib }: + elpaBuild { + pname = "org-modern"; + ename = "org-modern"; + version = "0.3"; + src = fetchurl { + url = "https://elpa.gnu.org/packages/org-modern-0.3.tar"; + sha256 = "14f5grai6k9xbpyc33pcpgi6ka8pgy7vcnqqi77nclzq2yxhl9c1"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/org-modern.html"; + license = lib.licenses.free; + }; + }) {}; org-real = callPackage ({ boxy, elpaBuild, emacs, fetchurl, lib, org }: elpaBuild { pname = "org-real"; @@ -3025,10 +3085,10 @@ elpaBuild { pname = "org-remark"; ename = "org-remark"; - version = "1.0.2"; + version = "1.0.4"; src = fetchurl { - url = "https://elpa.gnu.org/packages/org-remark-1.0.2.tar"; - sha256 = "12g9kmr0gfs1pi1410akvcaiax0dswbw09sgqbib58mikb3074nv"; + url = "https://elpa.gnu.org/packages/org-remark-1.0.4.tar"; + sha256 = "1mbsp92vw8p8l2pxs53r7wafrplrwfx0rmfk723cl9hpvghvl9vf"; }; packageRequires = [ emacs org ]; meta = { @@ -3055,10 +3115,10 @@ elpaBuild { pname = "org-translate"; ename = "org-translate"; - version = "0.1.3"; + version = "0.1.4"; src = fetchurl { - url = "https://elpa.gnu.org/packages/org-translate-0.1.3.el"; - sha256 = "0m52vv1961kf8f1gw8c4n02hxcvhdw3wgzmcxvjcdijfnjkarm33"; + url = "https://elpa.gnu.org/packages/org-translate-0.1.4.tar"; + sha256 = "0dvg3h8mmzlqfg60rwxjgy17sqv84p6nj2ngjdafkp9a4halv0g7"; }; packageRequires = [ emacs org ]; meta = { @@ -3096,6 +3156,21 @@ license = lib.licenses.free; }; }) {}; + osm = callPackage ({ elpaBuild, emacs, fetchurl, lib }: + elpaBuild { + pname = "osm"; + ename = "osm"; + version = "0.6"; + src = fetchurl { + url = "https://elpa.gnu.org/packages/osm-0.6.tar"; + sha256 = "0p19qyx4gw1rn2f5hlxa7gx1sph2z5vjw7cnxwpjhbbr0430zzwb"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/osm.html"; + license = lib.licenses.free; + }; + }) {}; other-frame-window = callPackage ({ elpaBuild, emacs, fetchurl, lib }: elpaBuild { pname = "other-frame-window"; @@ -3220,10 +3295,10 @@ elpaBuild { pname = "phps-mode"; ename = "phps-mode"; - version = "0.4.17"; + version = "0.4.19"; src = fetchurl { - url = "https://elpa.gnu.org/packages/phps-mode-0.4.17.tar"; - sha256 = "1j3whjxhjawl1i5449yf56ljbazx90272gr8zfr36s8h8rijfjn9"; + url = "https://elpa.gnu.org/packages/phps-mode-0.4.19.tar"; + sha256 = "1l9ivg6x084r235jpd90diaa4v29r1kyfsblzsb8blskb9ka5b56"; }; packageRequires = [ emacs ]; meta = { @@ -4245,10 +4320,10 @@ elpaBuild { pname = "tempel"; ename = "tempel"; - version = "0.2"; + version = "0.3"; src = fetchurl { - url = "https://elpa.gnu.org/packages/tempel-0.2.tar"; - sha256 = "0xn2vqaxqv04zmlp5hpb9vxkbs3bv4dk22xs5j5fqjid2hcv3714"; + url = "https://elpa.gnu.org/packages/tempel-0.3.tar"; + sha256 = "0aa3f3sfvibp3wl401fdlww70axl9hxasbza70i44vqq0y9csv40"; }; packageRequires = [ emacs ]; meta = { @@ -4395,16 +4470,16 @@ license = lib.licenses.free; }; }) {}; - undo-tree = callPackage ({ elpaBuild, fetchurl, lib }: + undo-tree = callPackage ({ elpaBuild, emacs, fetchurl, lib, queue }: elpaBuild { pname = "undo-tree"; ename = "undo-tree"; - version = "0.7.5"; + version = "0.8.2"; src = fetchurl { - url = "https://elpa.gnu.org/packages/undo-tree-0.7.5.el"; - sha256 = "00admi87gqm0akhfqm4dcp9fw8ihpygy030955jswkha4zs7lw2p"; + url = "https://elpa.gnu.org/packages/undo-tree-0.8.2.tar"; + sha256 = "0fgir9pls9439zwyl3j2yvrwx9wigisj1jil4ijma27dfrpgm288"; }; - packageRequires = []; + packageRequires = [ emacs queue ]; meta = { homepage = "https://elpa.gnu.org/packages/undo-tree.html"; license = lib.licenses.free; @@ -4605,10 +4680,10 @@ elpaBuild { pname = "vertico"; ename = "vertico"; - version = "0.20"; + version = "0.21"; src = fetchurl { - url = "https://elpa.gnu.org/packages/vertico-0.20.tar"; - sha256 = "1hg91f74klbwisxzp74d020v42l28wik9y1lg3hrbdspnhlhsdrl"; + url = "https://elpa.gnu.org/packages/vertico-0.21.tar"; + sha256 = "0aw3hkr46zghvyp7s2b6ziqavsf1zpml4bbxcvs4kvm05qa0y1hv"; }; packageRequires = [ emacs ]; meta = { @@ -4933,10 +5008,10 @@ elpaBuild { pname = "xref"; ename = "xref"; - version = "1.4.0"; + version = "1.4.1"; src = fetchurl { - url = "https://elpa.gnu.org/packages/xref-1.4.0.tar"; - sha256 = "1ng03fyhpisa1v99sc96mpr7hna1pmg4gdc61p86r8lka9m5gqfx"; + url = "https://elpa.gnu.org/packages/xref-1.4.1.tar"; + sha256 = "1vbpplw0sngymmawi940nlqmncqznb5vp7zi0ib8v66g3y33ijrf"; }; packageRequires = [ emacs ]; meta = { diff --git a/pkgs/applications/editors/emacs/elisp-packages/nongnu-generated.nix b/pkgs/applications/editors/emacs/elisp-packages/nongnu-generated.nix index 60028dc9950..e385cf63a16 100644 --- a/pkgs/applications/editors/emacs/elisp-packages/nongnu-generated.nix +++ b/pkgs/applications/editors/emacs/elisp-packages/nongnu-generated.nix @@ -258,10 +258,10 @@ elpaBuild { pname = "cider"; ename = "cider"; - version = "1.2.0"; + version = "1.3.0"; src = fetchurl { - url = "https://elpa.nongnu.org/nongnu/cider-1.2.0.tar"; - sha256 = "1dkn5mcp4vyk6h4mqrn7fcqjs4h0dx1y1b1pcg2jpyx11mhdpjxf"; + url = "https://elpa.nongnu.org/nongnu/cider-1.3.0.tar"; + sha256 = "10kg30s0gb09l0z17v2hqxy9v5pscnpqp5dng62cjh0x3hdi4i7x"; }; packageRequires = [ clojure-mode @@ -281,10 +281,10 @@ elpaBuild { pname = "clojure-mode"; ename = "clojure-mode"; - version = "5.13.0"; + version = "5.14.0"; src = fetchurl { - url = "https://elpa.nongnu.org/nongnu/clojure-mode-5.13.0.tar"; - sha256 = "16xll0sp7mqzwldfsihp7j3dlm6ps1l1awi122ff8w7xph7b0wfh"; + url = "https://elpa.nongnu.org/nongnu/clojure-mode-5.14.0.tar"; + sha256 = "1lirhp6m5r050dm73nrslgzdgy6rdbxn02wal8n52q37m2armra2"; }; packageRequires = [ emacs ]; meta = { @@ -292,6 +292,21 @@ license = lib.licenses.free; }; }) {}; + coffee-mode = callPackage ({ elpaBuild, emacs, fetchurl, lib }: + elpaBuild { + pname = "coffee-mode"; + ename = "coffee-mode"; + version = "0.6.3"; + src = fetchurl { + url = "https://elpa.nongnu.org/nongnu/coffee-mode-0.6.3.tar"; + sha256 = "1yv1b5rzlj7cpz7gsv2j07mr8z6lkwxp1cldkrc6xlhcbqh8795a"; + }; + packageRequires = [ emacs ]; + meta = { + homepage = "https://elpa.gnu.org/packages/coffee-mode.html"; + license = lib.licenses.free; + }; + }) {}; color-theme-tangotango = callPackage ({ color-theme , elpaBuild , fetchurl @@ -688,16 +703,21 @@ license = lib.licenses.free; }; }) {}; - geiser = callPackage ({ elpaBuild, emacs, fetchurl, lib, transient }: + geiser = callPackage ({ elpaBuild + , emacs + , fetchurl + , lib + , project + , transient }: elpaBuild { pname = "geiser"; ename = "geiser"; - version = "0.22.2"; + version = "0.23"; src = fetchurl { - url = "https://elpa.nongnu.org/nongnu/geiser-0.22.2.tar"; - sha256 = "0mva8arcxj1kf6g7s6f6ik70gradmbnhhiaf7rdkycxdd8kdqn7i"; + url = "https://elpa.nongnu.org/nongnu/geiser-0.23.tar"; + sha256 = "1g82jaldq4rxiyhnzyqf82scys1545djc3y2nn9ih292g8rwqqms"; }; - packageRequires = [ emacs transient ]; + packageRequires = [ emacs project transient ]; meta = { homepage = "https://elpa.gnu.org/packages/geiser.html"; license = lib.licenses.free; @@ -782,10 +802,10 @@ elpaBuild { pname = "geiser-guile"; ename = "geiser-guile"; - version = "0.21.2"; + version = "0.23"; src = fetchurl { - url = "https://elpa.nongnu.org/nongnu/geiser-guile-0.21.2.tar"; - sha256 = "06mr8clsk8fj73q4ln90i28xs8axl4sd68wiyl41kgg9w5y78cb7"; + url = "https://elpa.nongnu.org/nongnu/geiser-guile-0.23.tar"; + sha256 = "0fxn15kpljkdj1vvrv51232km49z2sbr6q9ghpvqwkgi0z9khxz6"; }; packageRequires = [ emacs geiser ]; meta = { @@ -2210,10 +2230,10 @@ elpaBuild { pname = "web-mode"; ename = "web-mode"; - version = "17.1.4"; + version = "17.2.0"; src = fetchurl { - url = "https://elpa.nongnu.org/nongnu/web-mode-17.1.4.tar"; - sha256 = "0863p8ikc8yqw0dahswi5s9q7v7rg1hasdxz5jwkd796fh1ih78n"; + url = "https://elpa.nongnu.org/nongnu/web-mode-17.2.0.tar"; + sha256 = "15m7rx7sz7f6h0x90811bcl8gdcpn216ia48nmkqhqrm85synlja"; }; packageRequires = [ emacs ]; meta = { diff --git a/pkgs/applications/editors/emacs/elisp-packages/recipes-archive-melpa.json b/pkgs/applications/editors/emacs/elisp-packages/recipes-archive-melpa.json index 0afde2c5c33..8cab450cb2e 100644 --- a/pkgs/applications/editors/emacs/elisp-packages/recipes-archive-melpa.json +++ b/pkgs/applications/editors/emacs/elisp-packages/recipes-archive-melpa.json @@ -204,19 +204,19 @@ "repo": "ymarco/auto-activating-snippets", "unstable": { "version": [ - 20220217, - 2054 + 20220301, + 1628 ], - "commit": "1cb08537e255c60a9439e3fea7c5d406e32f5e97", - "sha256": "1mm8c69r9jjs4qr0nha7pj1i8pq03q4nban4pik280swn4c8f3zl" + "commit": "8ce591165e0bdc1a6ea76e78bc10c6b55bab9634", + "sha256": "0v9hw8rf5ypxn7bbwdvv5wrmvdghp691xkfc7kj2zihc0f7vyxak" }, "stable": { "version": [ 1, - 0 + 1 ], - "commit": "3076cefea0f6ae9d7757f13c27b5602e007b58ec", - "sha256": "1psy6qpqxh6dm2ix7pwqdcq0rbiy6hyd830g76jk4wvj4spm5rpf" + "commit": "5d83f76823bc0b86d5270277b57a627f3af427a1", + "sha256": "0vw57jrjds4y37aryjx8lcxs6w6amn2gxhpxlr3ylwi1b6yimvhf" } }, { @@ -273,8 +273,8 @@ 20210923, 950 ], - "commit": "fc0eeb780d22aa1aac337f06cc9b479c51600243", - "sha256": "1vv3p6fkp352chrjm7jwc3frifzfral1jyrkx4m8pfq0cyj2g197" + "commit": "0d6aace2ffd184137618a0c6e7f29826cbd8d1f9", + "sha256": "1rf989ll07xqmamdigzqmamhfscx7wk0xh5yaqam1q3hj13yywm5" } }, { @@ -308,16 +308,16 @@ "repo": "abstools/abs-mode", "unstable": { "version": [ - 20210411, - 1013 + 20220316, + 921 ], "deps": [ "erlang", "flymake", "maude-mode" ], - "commit": "3b332ec1e941874f220897e5c0e0a6df762ca28d", - "sha256": "0m7v87w2akdpgr360gyjiw0p5sc6ms3y9bccwi9j4jz4gnlix6l5" + "commit": "d860ddbbd7cb93c7a77980c78c1a2a7634ef01e1", + "sha256": "03j70vk0gaf96cljkxxk2d1df85b968yn31wa13d465swcaq8wav" }, "stable": { "version": [ @@ -1763,20 +1763,26 @@ "repo": "codesuki/add-node-modules-path", "unstable": { "version": [ - 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"error": "Not in archive", "fetcher": "github", - "repo": "Alexander-Miller/treemacs" + "repo": "Alexander-Miller/treemacs", + "unstable": { + "version": [ + 20220221, + 2038 + ], + "deps": [ + "dash", + "treemacs" + ], + "commit": "b18a05b1f62074a40e6011d83cd4c92cbee040dd", + "sha256": "0975n5d1rl9dqi9qwsg724cjxl753rw30xxngg7qs6338mp77c1y" + } }, { "ename": "treepy", @@ -108417,8 +108811,8 @@ 20180904, 2313 ], - "commit": "886232c6d7e92a8e9fe573eef46754ebe321f90d", - "sha256": "10h6p2dwl2k2p35pi3n8y85qh5y0zrr9nhfr4sviwzj1nbqdrvdr" + "commit": "f7cbd4f9283dbb0528445a3ea6d3b291d97065f6", + "sha256": "08l88w680jcl609wnsalydgfjnhrvbwiasgss7sv5r1xa16as942" }, "stable": { "version": [ @@ -108438,11 +108832,11 @@ "repo": "ianyepan/tron-legacy-emacs-theme", "unstable": { "version": [ - 20210420, - 1201 + 20220312, + 1645 ], - "commit": "e7d16ebe4a824e7d7766fb34ffe4ea3b002f3d23", - "sha256": "15njpd9923rl07lq4mxs611glgnw3qyr21wk6xak6n1cminvy81g" + "commit": "d775d9f348a942230ea57b6520e1eb56a5d67569", + "sha256": "03v8izw95ksl104w4zgacy0wpcvl4x3kwzamvd11d7ndlzn3jqpy" }, "stable": { "version": [ @@ -108700,14 +109094,14 @@ "repo": "smallwat3r/tubestatus.el", "unstable": { "version": [ - 20210801, - 1522 + 20220303, + 1736 ], "deps": [ "request" ], - "commit": "eeda4c2647cfdb910de776398037183f48e3fa72", - "sha256": "1fn405rmwcy8y5sa8lh5grq87n5zxbln2b9agxyilfx4jm6rcnpl" + "commit": "c81373f1bc32cbd2e2d642ee10ee1cb31915acb0", + "sha256": "1ili2jfp8ycigq022ws92x6x91k0myq34ipq318b461shd1by4yq" } }, { @@ -108927,24 +109321,6 @@ } }, { - "ename": "twtxt", - "commit": "4627ee00b9439d9dac9971ad1060af4bcf31446c", - "sha256": "0fpq3nz30v0g355xq0pcwf8iqykvn9af1wdx76v5fgzimlrpwy7l", - "fetcher": "github", - "repo": "deadblackclover/twtxt-el", - "unstable": { - "version": [ - 20200824, - 1323 - ], - "deps": [ - "request" - ], - "commit": "e7bafaf92124bb4f2a0be5c1a635b80f9b3a8c87", - "sha256": "1qqc6ykrpq311fwn5mvzc3yl6z48v1c3yq3vi8g9zv63ywj33bbk" - } - }, - { "ename": "typescript-mode", "commit": "94455323364d5a6b00e2786d577134eb350826b4", "sha256": "1abnik2dq0zfnp8pk8x6zy962qww78xadm87xyiwz17559g88d82", @@ -108955,8 +109331,8 @@ 20220223, 1506 ], - "commit": "84ff4228b5d1af287f35c9869e8eb079184a9831", - "sha256": "1kjw7phch5vyxc7gwkcwdl1p0cy3zzg7vyx4k1p5dbvh261k7c6h" + "commit": "88f317f0b6aef8f8d232e912fdbc679799580c56", + "sha256": "0qkqxvam3r21philap71dy4980sbadx32176rz20wwrs10szqnck" }, "stable": { "version": [ @@ -109374,8 +109750,8 @@ 20200719, 618 ], - "commit": "33cb9f541b1f7d4fa675e244822c8a074ebb4c4e", - "sha256": "104170qlxrvg5gr1m3ajfnankvnd3700k46lhrh7i356jl23kh1h" + "commit": "b9069b8af1bfa360d3b7197a7101fe0233c92750", + "sha256": "05873v76z7f7jrhkc78bmkgmqjvbidyaf1dymcccc8cgsc7bixp1" }, "stable": { "version": [ @@ -109469,8 +109845,8 @@ "deps": [ "cl-lib" ], - "commit": "94959e708d5a74913788324893d0b6dabc88ff18", - "sha256": "09gf5bm2kwgfx4b1rbnljarzj9mfbx3f0xiqias3cbj0x0lmwmd1" + "commit": "efb8ac3935635ad0fd731de0ef64b14a23f50b42", + "sha256": "0mvj2jhj2dl4pr4gh7rh3042lawxik9myvvnvqc25zjqa5n4jp8c" }, "stable": { "version": [ @@ -109667,11 +110043,11 @@ "repo": "astoff/unicode-math-input.el", "unstable": { "version": [ - 20210612, - 847 + 20220302, + 1231 ], - "commit": "2788d7824d23749a6e5b33f653c47471455da187", - "sha256": "1kqaqzlgf9gqxf3fzy41m606h7ridp5iik1w5a0dpq86ni23r77c" + "commit": "06bf37d649fc3b41fcd5fa29c0b0eda555aaf8bb", + "sha256": "0i6qyc5jl1151dyp95wjx7f7fs4m0pb7qnlb6skr33rrfl1icmpn" } }, { @@ -110318,8 +110694,8 @@ 20220220, 150 ], - "commit": "b590f6d3643ff70dfde0181abb287d7b24073067", - "sha256": "0zp6zyxk033n8p3ccaz50mrnhrcnb7w40b0xjm1lk4snap3hlihq" + "commit": "fb82a02b6c86e6224482b27caa08662b023b40a1", + "sha256": "1lncgprxmir4czq8iiww9cmpd4si77vipkgksjrv37r9xz5hgyr4" }, "stable": { "version": [ @@ -111448,11 +111824,11 @@ "repo": "thanhvg/emacs-virtual-comment", "unstable": { "version": [ - 20211103, - 209 + 20220301, + 430 ], - "commit": "4effa95c7d6243fc5696597f488653f9d2a5d4a6", - "sha256": "164yiiqqxk2fpjk65y72fr71j05b1330zmvbaxh0w3ww2axkjz68" + "commit": "5205379bcfa1774a745e3dcbaa4ea861ff6a9ad2", + "sha256": "1blgy286id63mqr2gan7xkg88rn2nwj36vqdsyyxq8w2p3f5qh54" } }, { @@ -111771,8 +112147,8 @@ 20220214, 1401 ], - "commit": "6fde70a06788e2b8851e765c75ae76cd1655287d", - "sha256": "10wjd76qrr503rbvpklpcxz74pcx08zvqgn3g6a0qrzpsiigkscd" + "commit": "ac33dc2a4a7c017d2baf03a66c69d8e5c983420e", + "sha256": "1v397idaxzmc8g3a9fjba8xsxhhsdsz589vs6k8v60p7v8j1ivrl" }, "stable": { "version": [ @@ -111794,8 +112170,8 @@ 20220214, 1401 ], - "commit": "6bfe9144b626b98bbb67cbf512f3419c25ae973f", - "sha256": "05rkm1zlxmz65z1k9i3nh1dgd6arn97h0cyv3mbyw0pksfnf0gx7" + "commit": "a1a9dd9f3d6ba2352afaf920c911eaf6b2e7e0c1", + "sha256": "033rgvxas97858969nbg8xzzsx3p2x4a425wk9jvbbhl8aw8xf3d" }, "stable": { "version": [ @@ -112019,8 +112395,8 @@ "org-roam", "s" ], - "commit": "266c491ee2d583648f391803a278e8c5befbd8bd", - "sha256": "1dw05c0kfrjv09lqdkwg8i6hkxd3g2zaclixfhfzgs2976a9r23k" + "commit": "ba44342aea6a81c7b7ca6fcaae9a537701789b5e", + "sha256": "0avqxd264dpbyh8cza0pv8miflyaaqlx27xdjix4xj42wq8k6rzm" }, "stable": { "version": [ @@ -112045,14 +112421,14 @@ "repo": "embed-me/vunit-mode", "unstable": { "version": [ - 20220121, - 1644 + 20220316, + 1812 ], "deps": [ "hydra" ], - "commit": "13311cc9fba6e73cf859dd5defefd330cc41b489", - "sha256": "0k7xj2a0xdc4g0bi1fxmwy1bl1ha9z68f7l1qc296r8q3hq8ghi9" + "commit": "5643460a7011d6bc13c2d4762f329d19f6c7d46b", + "sha256": "1zzlfscnzvck658ylsmqwk30jdf9qnrnmhvghd3xinlhglnmwrp7" } }, { @@ -112250,16 +112626,16 @@ "repo": "abrochard/walkman", "unstable": { "version": [ - 20201229, - 1811 + 20220318, + 2122 ], "deps": [ "json-mode", "org", "transient" ], - "commit": "0cb9c2fef6e611b4389f7df7fcccc17744053e9b", - "sha256": "1fv4bn6c04kv39jv25r09pvxc5hz5gwwbj16fhxs5930rf77ikqb" + "commit": "3118dd4f493caffcc2849058833572dfc0c0e0a9", + "sha256": "03hyz3bhbisymm0gzqzsrmvyzkkgh73zbqgra6m70jka8sv065xs" }, "stable": { "version": [ @@ -112787,14 +113163,14 @@ "repo": "emacs-love/weblorg", "unstable": { "version": [ - 20210919, - 1547 + 20220312, + 2008 ], "deps": [ "templatel" ], - "commit": "0f8ec7e9065b2962c93209ee30b46f91843e2815", - "sha256": "0jiq879m74ysl0gb9wh1qmxyxi79nhnr2b1slq33mwf98r1nzcbg" + "commit": "b2bb79ed2c532cad5b03455d8cae887ddb803db3", + "sha256": "0xz9f7vz3h82hksz0swf5ykdh1fwh6dyk7dadjvral7iqjz4pjmf" }, "stable": { "version": [ @@ -112855,8 +113231,8 @@ "deps": [ "cl-lib" ], - "commit": "fda4455333309545c0787a79d73c19ddbeb57980", - "sha256": "1ga4m9xgiczb6sv7dhmy4841rd9wxsirrvi8va34srpzlq51iq65" + "commit": "82b370602fa0158670b1c6c769f223159affce9b", + "sha256": "0bl1hwdy6ign624lhb8dncvahvrs8j96dss4kl5rfxzy5rpva0jp" }, "stable": { "version": [ @@ -113354,9 +113730,16 @@ "ename": "why-this", "commit": "f45e4eabb023673be2dd3c6c46e752085587c0e2", "sha256": "1pb73qc67w73p664kfd0na1qmzbz00dmjz468smrpjjscqmazmp3", - "error": "Not in archive", "fetcher": "git", - "url": "https://codeberg.org/akib/emacs-why-this.git" + "url": "https://codeberg.org/akib/emacs-why-this.git", + "unstable": { + "version": [ + 20220314, + 1329 + ], + "commit": "ca4cf46d6e7b961a0c0fa39ac084fdca3c8c93b2", + "sha256": "14zb4abakpy2s05lfry097i0gg2d3njj0847a62dnwv8hgypsk6c" + } }, { "ename": "wide-column", @@ -113887,11 +114270,11 @@ "repo": "magit/with-editor", "unstable": { "version": [ - 20220211, - 2034 + 20220318, + 1640 ], - "commit": "f514f23258af67a10fc8e1c431bfe94702b6e65b", - "sha256": "095gmw87ch8mnwcldyab89a04wr5ahb2hgh0nd0gbhg7mkca17ph" + "commit": "495a545178bc43adf96dc0dd7dd0546e56127d7c", + "sha256": "0dcqim83x73m0gag3gca7cdqn6vjq2gfdvyhlmfvzg2n4153wr0i" }, "stable": { "version": [ @@ -114141,8 +114524,8 @@ 20220225, 1907 ], - "commit": "19be797818be2d9ac5a0a8acf30b43ad38e2f4ed", - "sha256": "13yj1pl9v0345dnxwdpy50b74syrbqhlrf8ldfnxpiww090n7zmq" + "commit": "5a1f9a45c3d1fa58c3de5183c4456572ae861d49", + "sha256": "0jd7lbb7mbjfk66mkzxnhffh3dlj28xma5a8km5hc4lclqlm74sx" } }, { @@ -114272,11 +114655,11 @@ "repo": "pashinin/workgroups2", "unstable": { "version": [ - 20220106, - 249 + 20220308, + 1314 ], - "commit": "d2e1f33001f1777767a7c6e862d5e6a37e688f42", - "sha256": "03lbfbi05g03w1cnys6smaf0yxm6168ckmdbcvkxy0k519ngzyd1" + "commit": "b2c457a720e98dd1c560860e44a6a80372ef07ef", + "sha256": "198bm8l8jf6xvc7djy3d9z7xm437pkabmi9i30pd79g5l2dikj8f" }, "stable": { "version": [ @@ -115370,11 +115753,11 @@ "repo": "zkry/yaml.el", "unstable": { "version": [ - 20210730, - 143 + 20220311, + 332 ], - "commit": "84b88c9ed178af16da18b230c1f61c57cefedf28", - "sha256": "13fjxrr7iyfagbm21p5is5jw1zv56ns2mnac145v8lqli6mrr5gx" + "commit": "34c300b08579b72c7c92aefee1f4b500913f0c85", + "sha256": "1lwhm3c7xmx1j9ggf9ka0whpm7g5p6b11gfv1bxkdx1j8ypvxn0m" }, "stable": { "version": [ @@ -115537,11 +115920,11 @@ "repo": "binjo/yara-mode", "unstable": { "version": [ - 20210520, - 1318 + 20220317, + 935 ], - "commit": "345cf782926414f92f57d7f1b129974dc38a545b", - "sha256": "0n3cnxxwm3rgzpgqy1kkv6fhqzqw3gnj1p9anp5vdhss8fdad7s3" + "commit": "4c959b300ce52665c92e04e524dda5ed051c34f3", + "sha256": "0kb2a4hcmaczn279hbgk0jv88hsjznv1kqpkgkadszd02q53n0cl" } }, { @@ -115616,8 +115999,8 @@ 20220212, 1742 ], - "commit": "d8674bbbc9d4d7bdba374f0c0473ebb1912bcac2", - "sha256": "1nryhfiddak70y1hhhzkpb2afy00kd7vc3vg4ja0frpdvdrl93pz" + "commit": "82772ac2508a4549c75f2aa31d901caea468a0fb", + "sha256": "1ccyf0y9886vq4007xr4g8w05jnw3v8pfzlqxdk7j4babj8kyjw9" }, "stable": { "version": [ @@ -116531,11 +116914,11 @@ "repo": "localauthor/zk", "unstable": { "version": [ - 20220227, - 1351 + 20220317, + 1147 ], - "commit": "a8785b1e012fa178674d5c9fab014b60ca1ba269", - "sha256": "1fy6mz0f1pgx5m9q76a7803rl9pzg1v5pvxslpsw93qi6xw1wjqv" + "commit": "527ca510d073bcda7746c754935346f531c60b4b", + "sha256": "1zvhd1fk2p9n3gn8bbqsv3lcgc2bmhd6hf0pp4a8z0wv5nkv1235" } }, { @@ -116546,14 +116929,14 @@ "repo": "localauthor/zk", "unstable": { "version": [ - 20220220, - 1952 + 20220312, + 2211 ], "deps": [ "zk" ], - "commit": "a8785b1e012fa178674d5c9fab014b60ca1ba269", - "sha256": "1fy6mz0f1pgx5m9q76a7803rl9pzg1v5pvxslpsw93qi6xw1wjqv" + "commit": "527ca510d073bcda7746c754935346f531c60b4b", + "sha256": "1zvhd1fk2p9n3gn8bbqsv3lcgc2bmhd6hf0pp4a8z0wv5nkv1235" } }, { @@ -116778,8 +117161,8 @@ 20201205, 1038 ], - "commit": "474ca4723517d95356145950b134652d5dc0c7f7", - "sha256": "0syr88kqzh27ap57v97prk2z0l9wkaysqf1263j7nn9pl4jswppd" + "commit": "1823f8431b36beae112a67f5b102e06afaaa52bf", + "sha256": "0mqz10ngfn2kyhm918gwx185zmmvzj47vha5dvwwkqxx28xcsfq6" }, "stable": { "version": [ @@ -116943,20 +117326,20 @@ "repo": "Vonfry/zoxide.el", "unstable": { "version": [ - 20211223, - 245 + 20220302, + 522 ], - "commit": "29508e94255c34174bc07c93749cad5d04700063", - "sha256": "12y0vqibb5sn9l42aiy1lm0cp0nl8d27zgql86va28glwzpma6s9" + "commit": "ecdcb62847b5e54ccd477d740e4974f28c8f5809", + "sha256": "1f4j53a1bm4kpgmlpfxnqb9zm8q0qxl7frxd8a0nqwfrxrzkqp8p" }, "stable": { "version": [ 1, - 1, + 2, 0 ], - "commit": "29508e94255c34174bc07c93749cad5d04700063", - "sha256": "12y0vqibb5sn9l42aiy1lm0cp0nl8d27zgql86va28glwzpma6s9" + "commit": "1ec22ca486aaa838828ec516e91f8880b478bd19", + "sha256": "1f4j53a1bm4kpgmlpfxnqb9zm8q0qxl7frxd8a0nqwfrxrzkqp8p" } }, { diff --git a/pkgs/applications/editors/ghostwriter/default.nix b/pkgs/applications/editors/ghostwriter/default.nix index 7d060a972cd..dfdf75627bf 100644 --- a/pkgs/applications/editors/ghostwriter/default.nix +++ b/pkgs/applications/editors/ghostwriter/default.nix @@ -14,13 +14,13 @@ mkDerivation rec { pname = "ghostwriter"; - version = "2.1.1"; + version = "2.1.2"; src = fetchFromGitHub { owner = "wereturtle"; repo = pname; rev = version; - hash = "sha256-w4qCJgfBnN1PpPfhdsLdBpCRAWai9RrwU3LZl8DdEcw="; + hash = "sha256-NpgtxYqxMWMZXZRZjujob40Nn6hirsSzcjoqRJR6Rws="; }; nativeBuildInputs = [ qmake pkg-config qttools ]; diff --git a/pkgs/applications/editors/lapce/default.nix b/pkgs/applications/editors/lapce/default.nix new file mode 100644 index 00000000000..2653806a14f --- /dev/null +++ b/pkgs/applications/editors/lapce/default.nix @@ -0,0 +1,83 @@ +{ lib +, stdenv +, fetchFromGitHub +, rustPlatform +, cmake +, pkg-config +, python3 +, perl +, freetype +, fontconfig +, libxkbcommon +, xcbutil +, libX11 +, libXcursor +, libXrandr +, libXi +, vulkan-loader +, copyDesktopItems +, makeDesktopItem +}: + +rustPlatform.buildRustPackage rec { + pname = "lapce"; + version = "0.0.10"; + + src = fetchFromGitHub { + owner = "lapce"; + repo = pname; + rev = "v${version}"; + sha256 = "tOVFm4DFQurFU4DtpPwxXQLbTGCZnrV1FfYKtvkRxRE="; + }; + + cargoPatches = [ ./fix-version.patch ]; + + cargoSha256 = "BwB3KgmI5XnZ5uHv6f+kGKBzpyxPWcoKvF7qw90eorI="; + + nativeBuildInputs = [ + cmake + pkg-config + python3 + perl + copyDesktopItems + ]; + + buildInputs = [ + freetype + fontconfig + libxkbcommon + xcbutil + libX11 + libXcursor + libXrandr + libXi + vulkan-loader + ]; + + # Add missing vulkan dependency to rpath + preFixup = '' + patchelf --add-needed ${vulkan-loader}/lib/libvulkan.so.1 $out/bin/lapce + ''; + + postInstall = '' + install -Dm0644 $src/extra/images/logo.svg $out/share/icons/hicolor/scalable/apps/lapce.svg + ''; + + desktopItems = [ (makeDesktopItem { + name = "lapce"; + exec = "lapce %F"; + icon = "lapce"; + desktopName = "Lapce"; + comment = meta.description; + genericName = "Code Editor"; + categories = [ "Development" "Utility" "TextEditor" ]; + }) ]; + + meta = with lib; { + description = "Lightning-fast and Powerful Code Editor written in Rust"; + homepage = "https://github.com/lapce/lapce"; + license = with licenses; [ asl20 ]; + maintainers = with maintainers; [ elliot ]; + broken = stdenv.isDarwin; + }; +} diff --git a/pkgs/applications/editors/lapce/fix-version.patch b/pkgs/applications/editors/lapce/fix-version.patch new file mode 100644 index 00000000000..2a8d96be169 --- /dev/null +++ b/pkgs/applications/editors/lapce/fix-version.patch @@ -0,0 +1,31 @@ +diff --git a/Cargo.lock b/Cargo.lock +index bc9a0f8..45a74ad 100644 +--- a/Cargo.lock ++++ b/Cargo.lock +@@ -2165,7 +2165,7 @@ dependencies = [ + + [[package]] + name = "lapce" +-version = "0.0.9" ++version = "0.0.10" + dependencies = [ + "lapce-core", + "lapce-proxy", +@@ -2173,7 +2173,7 @@ dependencies = [ + + [[package]] + name = "lapce-core" +-version = "0.0.9" ++version = "0.0.10" + dependencies = [ + "Inflector", + "alacritty_terminal 0.15.0", +@@ -2233,7 +2233,7 @@ dependencies = [ + + [[package]] + name = "lapce-proxy" +-version = "0.0.9" ++version = "0.0.10" + dependencies = [ + "alacritty_terminal 0.16.0-rc2", + "anyhow", diff --git a/pkgs/applications/editors/vim/common.nix b/pkgs/applications/editors/vim/common.nix index 0cb09814c0f..13c5c49db48 100644 --- a/pkgs/applications/editors/vim/common.nix +++ b/pkgs/applications/editors/vim/common.nix @@ -1,12 +1,12 @@ { lib, fetchFromGitHub }: rec { - version = "8.2.4227"; + version = "8.2.4350"; src = fetchFromGitHub { owner = "vim"; repo = "vim"; rev = "v${version}"; - sha256 = "sha256-Xj4ymkrWY5GWpQhEDYtPtaRovBa6j19dW9GWg9WSdig="; + sha256 = "sha256-+fCyLZi9+9r7tYoRQsVESkcoHHtM7vrVuOGdJi/9iF0="; }; enableParallelBuilding = true; diff --git a/pkgs/applications/editors/vim/plugins/overrides.nix b/pkgs/applications/editors/vim/plugins/overrides.nix index 9219e685c33..f3e1a5f12c3 100644 --- a/pkgs/applications/editors/vim/plugins/overrides.nix +++ b/pkgs/applications/editors/vim/plugins/overrides.nix @@ -832,7 +832,7 @@ self: super: { libiconv ]; - cargoSha256 = "12xaxpg4ws09rnp9prrqcac8581ggr36mpy39xyfngjy5xvcalaq"; + cargoSha256 = "035v8mm8v7aj8qwhvxsp6k0afn05gi2xb1achzsvm0m4a8a9xs65"; }; in '' @@ -846,6 +846,16 @@ self: super: { dependencies = with self; [ vim-maktaba ]; }); + # Due to case-sensitivety issues, the hash differs on Darwin systems, see: + # https://github.com/NixOS/nixpkgs/issues/157609 + vim-colorschemes = super.vim-colorschemes.overrideAttrs (old: { + src = old.src.overrideAttrs (srcOld: { + postFetch = (srcOld.postFetch or "") + lib.optionalString (!stdenv.isDarwin) '' + rm $out/colors/darkBlue.vim + ''; + }); + }); + vim-dasht = super.vim-dasht.overrideAttrs (old: { preFixup = '' substituteInPlace $out/autoload/dasht.vim \ diff --git a/pkgs/applications/editors/vscode/extensions/default.nix b/pkgs/applications/editors/vscode/extensions/default.nix index e9054f944e7..a5c8dcfb50f 100644 --- a/pkgs/applications/editors/vscode/extensions/default.nix +++ b/pkgs/applications/editors/vscode/extensions/default.nix @@ -5,6 +5,7 @@ , vscode-utils , asciidoctor , nodePackages +, python3Packages , jdk , llvmPackages_8 , nixpkgs-fmt @@ -1313,6 +1314,33 @@ let }; }; + kddejong.vscode-cfn-lint = let + inherit (python3Packages) cfn-lint; + in buildVscodeMarketplaceExtension { + mktplcRef = { + name = "vscode-cfn-lint"; + publisher = "kddejong"; + version = "0.21.0"; + sha256 = "sha256-IueXiN+077tiecAsVCzgYksWYTs00mZv6XJVMtRJ/PQ="; + }; + + nativeBuildInputs = [ jq moreutils ]; + + buildInputs = [ cfn-lint ]; + + postInstall = '' + cd "$out/$installPrefix" + jq '.contributes.configuration.properties."cfnLint.path".default = "${cfn-lint}/bin/cfn-lint"' package.json | sponge package.json + ''; + + meta = with lib; { + description = "CloudFormation Linter IDE integration, autocompletion, and documentation"; + homepage = "https://github.com/aws-cloudformation/cfn-lint-visual-studio-code"; + license = lib.licenses.asl20; + maintainers = with maintainers; [ wolfangaukang ]; + }; + }; + kubukoz.nickel-syntax = buildVscodeMarketplaceExtension { mktplcRef = { name = "nickel-syntax"; @@ -1374,6 +1402,18 @@ let }; }; + marp-team.marp-vscode = buildVscodeMarketplaceExtension { + mktplcRef = { + name = "marp-vscode"; + publisher = "marp-team"; + version = "1.5.0"; + sha256 = "0wqsj8rp58vl3nafkjvyw394h5j4jd7d24ra6hkvfpnlzrgv4yhs"; + }; + meta = { + license = lib.licenses.mit; + }; + }; + mikestead.dotenv = buildVscodeMarketplaceExtension { mktplcRef = { name = "dotenv"; @@ -1679,6 +1719,18 @@ let }; }; + richie5um2.snake-trail = buildVscodeMarketplaceExtension { + mktplcRef = { + name = "snake-trail"; + publisher = "richie5um2"; + version = "0.6.0"; + sha256 = "0wkpq9f48hplrgabb0v1ij6fc4sb8h4a93dagw4biprhnnm3qx49"; + }; + meta = with lib; { + license = licenses.mit; + }; + }; + ritwickdey.liveserver = buildVscodeMarketplaceExtension { mktplcRef = { name = "liveserver"; diff --git a/pkgs/applications/emulators/dolphin-emu/master.nix b/pkgs/applications/emulators/dolphin-emu/master.nix index 56e107300b5..be3e7f555f8 100644 --- a/pkgs/applications/emulators/dolphin-emu/master.nix +++ b/pkgs/applications/emulators/dolphin-emu/master.nix @@ -10,13 +10,13 @@ stdenv.mkDerivation rec { pname = "dolphin-emu"; - version = "5.0-15993"; + version = "5.0-16101"; src = fetchFromGitHub { owner = "dolphin-emu"; repo = "dolphin"; - rev = "5e595616379a694789fe749e40a27ef069f0090e"; - sha256 = "1kid8qjn8r7dxh2yc1y6yal6qkfxij0ymi3zryxsnym3rjh1jds9"; + rev = "8ecfa537a242de74d2e372e30d9d79b14584b2fb"; + sha256 = "3jLGVzTDzEtHWvIb9DFTbJiA9dE9Pm14vYER998Zln0="; fetchSubmodules = true; }; diff --git a/pkgs/applications/emulators/ryujinx/default.nix b/pkgs/applications/emulators/ryujinx/default.nix index 2ac16662b88..d2c2cf03683 100644 --- a/pkgs/applications/emulators/ryujinx/default.nix +++ b/pkgs/applications/emulators/ryujinx/default.nix @@ -17,13 +17,13 @@ buildDotnetModule rec { pname = "ryujinx"; - version = "1.1.64"; # Based off of the official github actions builds: https://github.com/Ryujinx/Ryujinx/actions/workflows/release.yml + version = "1.1.76"; # Based off of the official github actions builds: https://github.com/Ryujinx/Ryujinx/actions/workflows/release.yml src = fetchFromGitHub { owner = "Ryujinx"; repo = "Ryujinx"; - rev = "54bfaa125d9b6ae1be53ec431d40326fba51d0de"; - sha256 = "0p8wmnm8sjx7wqb5z62mp8c3cwrv241ji3fawj2qgqx3k9jlb31i"; + rev = "e2ffa5a125fcbe8a25c73d8e04c08c08ef378860"; + sha256 = "1rmiyjqwlsbzh9q7d12n72ka9adaby2rfcbn75sf47p5857yi3p9"; }; dotnet-sdk = dotnetCorePackages.sdk_6_0; diff --git a/pkgs/applications/emulators/ryujinx/deps.nix b/pkgs/applications/emulators/ryujinx/deps.nix index 804b17d8946..33f55f8cb6e 100644 --- a/pkgs/applications/emulators/ryujinx/deps.nix +++ b/pkgs/applications/emulators/ryujinx/deps.nix @@ -12,9 +12,9 @@ (fetchNuGet { pname = "GtkSharp"; version = "3.22.25.128"; sha256 = "0z0wx0p3gc02r8d7y88k1rw307sb2vapbr1k1yc5qdc38fxz5jsy"; }) (fetchNuGet { pname = "GtkSharp.Dependencies"; version = "1.1.1"; sha256 = "0ffywnc3ca1lwhxdnk99l238vsprsrsh678bgm238lb7ja7m52pw"; }) (fetchNuGet { pname = "LibHac"; version = "0.16.0"; sha256 = "1kivnf4c4km1a8y0sl34z9gfazlivna0x31q0065n0sz13g82spi"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-x64"; version = "6.0.0"; sha256 = "0r6jyxl3h1asj30la78skd5gsxgwjpvkspmkw1gglxfg85hnqc8w"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.osx-x64"; version = "6.0.0"; sha256 = "1hnqhvgjp342nx9s47w5sknmlpkfxbcfi50pa4vary2r7sv8ka2w"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.win-x64"; version = "6.0.0"; sha256 = "1j8cn97swc67ly7ca7m05akczrswbg0gjsk7473vad6770ph79vm"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-x64"; version = "6.0.3"; sha256 = "0rrrfgkr7rzhlnsnajvzb1ijkybp99d992bqxy9pbawmq7d60bdk"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.osx-x64"; version = "6.0.3"; sha256 = "09whyl3i9mzy10n5zxlq66lj3l4p29hm75igmdip2fb376zxyam3"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.win-x64"; version = "6.0.3"; sha256 = "11kv50kll3iq88kn40f5v5qlq8mydv6y6xz2cbzjw4aadd44njwq"; }) (fetchNuGet { pname = "Microsoft.CodeCoverage"; version = "16.8.0"; sha256 = "1y05sjk7wgd29a47v1yhn2s1lrd8wgazkilvmjbvivmrrm3fqjs8"; }) (fetchNuGet { pname = "Microsoft.CSharp"; version = "4.0.1"; sha256 = "0zxc0apx1gcx361jlq8smc9pfdgmyjh6hpka8dypc9w23nlsh6yj"; }) (fetchNuGet { pname = "Microsoft.CSharp"; version = "4.5.0"; sha256 = "01i28nvzccxbqmiz217fxs6hnjwmd5fafs37rd49a6qp53y6623l"; }) @@ -22,17 +22,18 @@ (fetchNuGet { pname = "Microsoft.IdentityModel.JsonWebTokens"; version = "6.15.0"; sha256 = "0dwx7dk8jr10784nriqbi364qbxzfwq0c6xia0ac5rzrp7179r4d"; }) (fetchNuGet { pname = "Microsoft.IdentityModel.Logging"; version = "6.15.0"; sha256 = "0jn9a20a2zixnkm3bmpmvmiv7mk0hqdlnpi0qgjkg1nir87czm19"; }) (fetchNuGet { pname = "Microsoft.IdentityModel.Tokens"; version = "6.15.0"; sha256 = "1nbgydr45f7lp980xyrkzpyaw2mkkishjwp3slgxk7f0mz6q8i1v"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-x64"; version = "6.0.0"; sha256 = "188cbx99ahvksap9w20943p62fmzxa6fl133w4r7c6bjpsrm29a4"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.win-x64"; version = "6.0.0"; sha256 = "1016ld3kg4dav2yxxh0i32cy0ixv7s0wl9czydbhkbs2d8669kfx"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-x64"; version = "6.0.0"; sha256 = "0qaylw18flrfl3vxnbp8wsiz29znidmn6dhv7k4v4jj2za16wmji"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.osx-x64"; version = "6.0.0"; sha256 = "1njh3iky5wyxdrisz8xfpy7kzbsrvzfhpdl01xbavvz189x4ajqp"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.win-x64"; version = "6.0.0"; sha256 = "13x1nkigy3nhbr8gxalij7krmzxpciyq4i8k7jdy9278zs1lm5a6"; }) + (fetchNuGet { pname = "Microsoft.NET.Test.Sdk"; version = "16.8.0"; sha256 = "1ln2mva7j2mpsj9rdhpk8vhm3pgd8wn563xqdcwd38avnhp74rm9"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-x64"; version = "6.0.3"; sha256 = "1py3nrfvllqlnb9mhs0qwgy7c14n33b2hfb0qc49rx22sqv8ylbp"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.win-x64"; version = "6.0.3"; sha256 = "1y428glba68s76icjzfl1v3p61pcz7rd78wybhabs8zq8w9cp2pj"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-x64"; version = "6.0.3"; sha256 = "0k9gc94cvn36p0v3pj296asg2sq9a8ah6lfw0xvvmd4hq2k72s79"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-x64"; version = "6.0.3"; sha256 = "0f04srx6q0jk81a60n956hz32fdngzp0xmdb2x7gyl77gsq8yijj"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.osx-x64"; version = "6.0.3"; sha256 = "0180ipzzz9pc6f6l17rg5bxz1ghzbapmiqq66kdl33bmbny6vmm9"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.win-x64"; version = "6.0.3"; sha256 = "1rjkzs2013razi2xs943q62ys1jh8blhjcnj75qkvirf859d11qw"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.0.1"; sha256 = "01al6cfxp68dscl15z7rxfw9zvhm64dncsw09a1vmdkacsa2v6lr"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.1.0"; sha256 = "08vh1r12g6ykjygq5d3vq09zylgb84l63k49jc4v8faw9g93iqqm"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "2.0.0"; sha256 = "1fk2fk2639i7nzy58m9dvpdnzql4vb8yl8vr19r2fp8lmj9w2jr0"; }) (fetchNuGet { pname = "Microsoft.NETCore.Targets"; version = "1.0.1"; sha256 = "0ppdkwy6s9p7x9jix3v4402wb171cdiibq7js7i13nxpdky7074p"; }) (fetchNuGet { pname = "Microsoft.NETCore.Targets"; version = "1.1.0"; sha256 = "193xwf33fbm0ni3idxzbr5fdq3i2dlfgihsac9jj7whj0gd902nh"; }) - (fetchNuGet { pname = "Microsoft.NET.Test.Sdk"; version = "16.8.0"; sha256 = "1ln2mva7j2mpsj9rdhpk8vhm3pgd8wn563xqdcwd38avnhp74rm9"; }) (fetchNuGet { pname = "Microsoft.TestPlatform.ObjectModel"; version = "16.8.0"; sha256 = "0ii9d88py6mjsxzj9v3zx4izh6rb9ma6s9kj85xmc0xrw7jc2g3m"; }) (fetchNuGet { pname = "Microsoft.TestPlatform.TestHost"; version = "16.8.0"; sha256 = "1rh8cga1km3jfafkwfjr0dwqrxb4306hf7fipwba9h02w7vlhb9a"; }) (fetchNuGet { pname = "Microsoft.Win32.Primitives"; version = "4.0.1"; sha256 = "1n8ap0cmljbqskxpf8fjzn7kh1vvlndsa75k01qig26mbw97k2q7"; }) diff --git a/pkgs/applications/graphics/gimp/default.nix b/pkgs/applications/graphics/gimp/default.nix index 9a91e5f8c6e..55c95c95cf7 100644 --- a/pkgs/applications/graphics/gimp/default.nix +++ b/pkgs/applications/graphics/gimp/default.nix @@ -180,5 +180,6 @@ in stdenv.mkDerivation rec { maintainers = with maintainers; [ jtojnar ]; license = licenses.gpl3Plus; platforms = platforms.unix; + mainProgram = "gimp"; }; } diff --git a/pkgs/applications/graphics/gimp/wrapper.nix b/pkgs/applications/graphics/gimp/wrapper.nix index 679e9136c44..353990ca3a9 100644 --- a/pkgs/applications/graphics/gimp/wrapper.nix +++ b/pkgs/applications/graphics/gimp/wrapper.nix @@ -26,4 +26,6 @@ in symlinkJoin { ln -sf "$each-${versionBranch}" $out/bin/$each done ''; + + inherit (gimp) meta; } diff --git a/pkgs/applications/graphics/glimpse/default.nix b/pkgs/applications/graphics/glimpse/default.nix index 01271f53b57..09e58fccf9d 100644 --- a/pkgs/applications/graphics/glimpse/default.nix +++ b/pkgs/applications/graphics/glimpse/default.nix @@ -195,5 +195,6 @@ stdenv.mkDerivation rec { maintainers = with maintainers; [ ashkitten erictapen ]; license = licenses.gpl3Plus; platforms = platforms.unix; + mainProgram = "glimpse"; }; } diff --git a/pkgs/applications/graphics/glimpse/wrapper.nix b/pkgs/applications/graphics/glimpse/wrapper.nix index 361b2ba38b6..63697a9bb66 100644 --- a/pkgs/applications/graphics/glimpse/wrapper.nix +++ b/pkgs/applications/graphics/glimpse/wrapper.nix @@ -27,4 +27,6 @@ symlinkJoin { ln -sf "$each-${versionBranch}" $out/bin/$each done ''; + + inherit (glimpse) meta; } diff --git a/pkgs/applications/graphics/menyoki/default.nix b/pkgs/applications/graphics/menyoki/default.nix index 7a601b9641d..296c9d20654 100644 --- a/pkgs/applications/graphics/menyoki/default.nix +++ b/pkgs/applications/graphics/menyoki/default.nix @@ -12,16 +12,16 @@ rustPlatform.buildRustPackage rec { pname = "menyoki"; - version = "1.5.6"; + version = "1.6.0"; src = fetchFromGitHub { owner = "orhun"; repo = pname; rev = "v${version}"; - sha256 = "sha256-2k8CRya9SylauYV+2aQS2QHkQhyiTHMgGp1DNoZ4jbU="; + sha256 = "sha256-7dqV18+Q0M1PrSXfMro5bUqSeA72Stj5JfP4MsTlrjM="; }; - cargoSha256 = "sha256-NLPqJepg0WRt/X3am9J7vwIE9bn+dt2UHE26Dc/QRMM="; + cargoSha256 = "sha256-c3VpHr/X2tKh7mY4dOQac0lS7oem0GGqjzv7feNwc24="; nativeBuildInputs = [ installShellFiles ] ++ lib.optional stdenv.isLinux pkg-config; diff --git a/pkgs/applications/graphics/pixinsight/default.nix b/pkgs/applications/graphics/pixinsight/default.nix index 8396ba55638..8e864b64096 100644 --- a/pkgs/applications/graphics/pixinsight/default.nix +++ b/pkgs/applications/graphics/pixinsight/default.nix @@ -7,12 +7,12 @@ stdenv.mkDerivation rec { pname = "pixinsight"; - version = "1.8.8-12"; + version = "1.8.9"; src = requireFile rec { - name = "PI-linux-x64-${version}-20211229-c.tar.xz"; + name = "PI-linux-x64-${version}-20220313-c.tar.xz"; url = "https://pixinsight.com/"; - sha256 = "7095b83a276f8000c9fe50caadab4bf22a248a880e77b63e0463ad8d5469f617"; + sha256 = "sha256-LvrTB8fofuysxR3OoZ2fkkOQU62yUAu8ePOczJG2uqU="; message = '' PixInsight is available from ${url} and requires a commercial (or trial) license. After a license has been obtained, PixInsight can be downloaded from the software distribution diff --git a/pkgs/applications/kde/konsole.nix b/pkgs/applications/kde/konsole.nix index 098001ef4c2..23cbdf28477 100644 --- a/pkgs/applications/kde/konsole.nix +++ b/pkgs/applications/kde/konsole.nix @@ -1,5 +1,5 @@ { - mkDerivation, lib, + mkDerivation, lib, nixosTests, extra-cmake-modules, kdoctools, kbookmarks, kcompletion, kconfig, kconfigwidgets, kcoreaddons, kguiaddons, ki18n, kiconthemes, kinit, kio, knotifications, @@ -22,5 +22,7 @@ mkDerivation { kservice ktextwidgets kwidgetsaddons kwindowsystem kxmlgui qtscript knewstuff ]; + passthru.tests.test = nixosTests.terminal-emulators.konsole; + propagatedUserEnvPkgs = [ (lib.getBin kinit) ]; } diff --git a/pkgs/applications/misc/ArchiSteamFarm/deps-aarch64-linux.nix b/pkgs/applications/misc/ArchiSteamFarm/deps-aarch64-linux.nix index 2fb60e8fef1..db2f3333280 100644 --- a/pkgs/applications/misc/ArchiSteamFarm/deps-aarch64-linux.nix +++ b/pkgs/applications/misc/ArchiSteamFarm/deps-aarch64-linux.nix @@ -55,12 +55,12 @@ (fetchNuGet { pname = "Humanizer.Core.zh-Hant"; version = "2.13.14"; sha256 = "07xsdx8j1rhp712kwy8jx9ang6f9zljqrvaggf0ssj5zqbliz93p"; }) (fetchNuGet { pname = "JetBrains.Annotations"; version = "2021.3.0"; sha256 = "01ssylllbwpana2w3iybi533zlvcsbhzjc8kr0g4kg307kjbfn8v"; }) (fetchNuGet { pname = "Markdig.Signed"; version = "0.26.0"; sha256 = "1giwdvmy6n4vfb0g7sxmdf9bklb4r2vdfhm1xfxvqys8rfm15d4z"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-arm"; version = "6.0.0"; sha256 = "0np2x73x2g3145qnd4ibkxlz535g19lansmaqkjplf0xc6qi5zsg"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-arm64"; version = "6.0.0"; sha256 = "1315hycfqlalh6k4zvvz7pz3dylpp0sr45j1v9avcb143hjqnav6"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-x64"; version = "6.0.0"; sha256 = "0r6jyxl3h1asj30la78skd5gsxgwjpvkspmkw1gglxfg85hnqc8w"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.osx-arm64"; version = "6.0.0"; sha256 = "1x254v25wilx4nh4dnjij4p9g0wsrqn9jyf4z48fa1bw1q3j3rba"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.osx-x64"; version = "6.0.0"; sha256 = "1hnqhvgjp342nx9s47w5sknmlpkfxbcfi50pa4vary2r7sv8ka2w"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.win-x64"; version = "6.0.0"; sha256 = "1j8cn97swc67ly7ca7m05akczrswbg0gjsk7473vad6770ph79vm"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-arm"; version = "6.0.3"; sha256 = "0s874cs94p1rxdy6n22ch3vr1ad1w0nkh7cnjxvxcjim2b4lfvln"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-arm64"; version = "6.0.3"; sha256 = "1jpw4s862j4aa7b7wchi03gxcy02j6hhpbsfbcayiyx6ry788i15"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-x64"; version = "6.0.3"; sha256 = "0rrrfgkr7rzhlnsnajvzb1ijkybp99d992bqxy9pbawmq7d60bdk"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.osx-arm64"; version = "6.0.3"; sha256 = "0s0xpqd0nc9kldfay5j1krbc1nyfasxw4xxjx1mwpnbr7n99wbms"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.osx-x64"; version = "6.0.3"; sha256 = "09whyl3i9mzy10n5zxlq66lj3l4p29hm75igmdip2fb376zxyam3"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.win-x64"; version = "6.0.3"; sha256 = "11kv50kll3iq88kn40f5v5qlq8mydv6y6xz2cbzjw4aadd44njwq"; }) (fetchNuGet { pname = "Microsoft.AspNetCore.JsonPatch"; version = "6.0.0-rc.1.21452.15"; sha256 = "0c3vnaag8gxlxij77n18m3hawpjkjjamsnq5kfjz5cvc7sfg3fwh"; }) (fetchNuGet { pname = "Microsoft.AspNetCore.Mvc.NewtonsoftJson"; version = "6.0.0-rc.1.21452.15"; sha256 = "1xyx358w4fqzxr9cy358agnm86rjijbnvikiqlngz2msgmldxi2z"; }) (fetchNuGet { pname = "Microsoft.CodeCoverage"; version = "17.0.0"; sha256 = "18gdbsqf6i79ld4ikqr4jhx9ndsggm865b5xj1xmnmgg12ydp19a"; }) @@ -74,24 +74,25 @@ (fetchNuGet { pname = "Microsoft.Extensions.Logging.Abstractions"; version = "5.0.0"; sha256 = "1yza38675dbv1qqnnhqm23alv2bbaqxp0pb7zinjmw8j2mr5r6wc"; }) (fetchNuGet { pname = "Microsoft.Extensions.Options"; version = "5.0.0"; sha256 = "1rdmgpg770x8qwaaa6ryc27zh93p697fcyvn5vkxp0wimlhqkbay"; }) (fetchNuGet { pname = "Microsoft.Extensions.Primitives"; version = "5.0.0"; sha256 = "0swqcknyh87ns82w539z1mvy804pfwhgzs97cr3nwqk6g5s42gd6"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-arm"; version = "6.0.0"; sha256 = "0m4q75iz6nj76sakab3265rzz969gk1rm2qwbvn0v60h3hflkqgb"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-x64"; version = "6.0.0"; sha256 = "07fgwhgnwcf58dkrfpmfyzqvd33x6ir25qn3v96j8bl4x9dn4sij"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-arm64"; version = "6.0.0"; sha256 = "0z2whbviiw6kjqa7c2gj3j7fqq31m28iww66n7hvy3cnqcn3471k"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-x64"; version = "6.0.0"; sha256 = "188cbx99ahvksap9w20943p62fmzxa6fl133w4r7c6bjpsrm29a4"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.win-x64"; version = "6.0.0"; sha256 = "1016ld3kg4dav2yxxh0i32cy0ixv7s0wl9czydbhkbs2d8669kfx"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-arm"; version = "6.0.0"; sha256 = "159hq4fn2n5n2mkxw6wi4nhj0ifclpn7gxspqljlgczlhkm1vxqb"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-arm64"; version = "6.0.0"; sha256 = "146rbmk0svvqaf0c4msg67h17x4k4gd5kzsbb3iqvs14xfkli2xw"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-x64"; version = "6.0.0"; sha256 = "0qaylw18flrfl3vxnbp8wsiz29znidmn6dhv7k4v4jj2za16wmji"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.osx-arm64"; version = "6.0.0"; sha256 = "1ywkycp9llrfk4jcd7agaivlhn9pig70cj65xkfhjw1wx51756jc"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.osx-x64"; version = "6.0.0"; sha256 = "1njh3iky5wyxdrisz8xfpy7kzbsrvzfhpdl01xbavvz189x4ajqp"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.win-x64"; version = "6.0.0"; sha256 = "13x1nkigy3nhbr8gxalij7krmzxpciyq4i8k7jdy9278zs1lm5a6"; }) + (fetchNuGet { pname = "Microsoft.NET.Test.Sdk"; version = "17.0.0"; sha256 = "0bknyf5kig5icwjxls7pcn51x2b2qf91dz9qv67fl70v6cczaz2r"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-arm"; version = "6.0.3"; sha256 = "14lypnhdby9939l75y6i077x4ccb22yakzjrbapl8an438h09yf8"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-arm64"; version = "6.0.3"; sha256 = "1swbrmpsayy99ycwaq68dx9ydd5h3qv9brwig6ryff1xfn1llndq"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-x64"; version = "6.0.3"; sha256 = "1py3nrfvllqlnb9mhs0qwgy7c14n33b2hfb0qc49rx22sqv8ylbp"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-arm64"; version = "6.0.3"; sha256 = "0rshhsygm3id8wig8mqs846l8dck65drszpzjh1d00d1fk2bxzs4"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-x64"; version = "6.0.3"; sha256 = "0k9gc94cvn36p0v3pj296asg2sq9a8ah6lfw0xvvmd4hq2k72s79"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.win-x64"; version = "6.0.3"; sha256 = "1y428glba68s76icjzfl1v3p61pcz7rd78wybhabs8zq8w9cp2pj"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-arm"; version = "6.0.3"; sha256 = "0ws9vxias9iynhcajkl9lz4c8f6hc4b5spypxd0ha33lcjaj408a"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-arm64"; version = "6.0.3"; sha256 = "0gjj6p2nnxzhyrmmmwiyrll782famhll9lbgj8cji1i93amxq1pb"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-x64"; version = "6.0.3"; sha256 = "0f04srx6q0jk81a60n956hz32fdngzp0xmdb2x7gyl77gsq8yijj"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.osx-arm64"; version = "6.0.3"; sha256 = "003s3x2ffk4g76jy4b60n6vizly03amjbli4lngsy0wzc86c0ij1"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.osx-x64"; version = "6.0.3"; sha256 = "0180ipzzz9pc6f6l17rg5bxz1ghzbapmiqq66kdl33bmbny6vmm9"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.win-x64"; version = "6.0.3"; sha256 = "1rjkzs2013razi2xs943q62ys1jh8blhjcnj75qkvirf859d11qw"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.0.1"; sha256 = "01al6cfxp68dscl15z7rxfw9zvhm64dncsw09a1vmdkacsa2v6lr"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.1.0"; sha256 = "08vh1r12g6ykjygq5d3vq09zylgb84l63k49jc4v8faw9g93iqqm"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "2.0.0"; sha256 = "1fk2fk2639i7nzy58m9dvpdnzql4vb8yl8vr19r2fp8lmj9w2jr0"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "5.0.0"; sha256 = "0mwpwdflidzgzfx2dlpkvvnkgkr2ayaf0s80737h4wa35gaj11rc"; }) (fetchNuGet { pname = "Microsoft.NETCore.Targets"; version = "1.0.1"; sha256 = "0ppdkwy6s9p7x9jix3v4402wb171cdiibq7js7i13nxpdky7074p"; }) (fetchNuGet { pname = "Microsoft.NETCore.Targets"; version = "1.1.0"; sha256 = "193xwf33fbm0ni3idxzbr5fdq3i2dlfgihsac9jj7whj0gd902nh"; }) - (fetchNuGet { pname = "Microsoft.NET.Test.Sdk"; version = "17.0.0"; sha256 = "0bknyf5kig5icwjxls7pcn51x2b2qf91dz9qv67fl70v6cczaz2r"; }) (fetchNuGet { pname = "Microsoft.OpenApi"; version = "1.2.3"; sha256 = "07b19k89whj69j87afkz86gp9b3iybw8jqwvlgcn43m7fb2y99rr"; }) (fetchNuGet { pname = "Microsoft.TestPlatform.ObjectModel"; version = "17.0.0"; sha256 = "1bh5scbvl6ndldqv20sl34h4y257irm9ziv2wyfc3hka6912fhn7"; }) (fetchNuGet { pname = "Microsoft.TestPlatform.TestHost"; version = "17.0.0"; sha256 = "06mn31cgpp7d8lwdyjanh89prc66j37dchn74vrd9s588rq0y70r"; }) diff --git a/pkgs/applications/misc/ArchiSteamFarm/deps-x86_64-linux.nix b/pkgs/applications/misc/ArchiSteamFarm/deps-x86_64-linux.nix index 54bcfc8f5b3..db2f3333280 100644 --- a/pkgs/applications/misc/ArchiSteamFarm/deps-x86_64-linux.nix +++ b/pkgs/applications/misc/ArchiSteamFarm/deps-x86_64-linux.nix @@ -55,12 +55,12 @@ (fetchNuGet { pname = "Humanizer.Core.zh-Hant"; version = "2.13.14"; sha256 = "07xsdx8j1rhp712kwy8jx9ang6f9zljqrvaggf0ssj5zqbliz93p"; }) (fetchNuGet { pname = "JetBrains.Annotations"; version = "2021.3.0"; sha256 = "01ssylllbwpana2w3iybi533zlvcsbhzjc8kr0g4kg307kjbfn8v"; }) (fetchNuGet { pname = "Markdig.Signed"; version = "0.26.0"; sha256 = "1giwdvmy6n4vfb0g7sxmdf9bklb4r2vdfhm1xfxvqys8rfm15d4z"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-arm"; version = "6.0.0"; sha256 = "0np2x73x2g3145qnd4ibkxlz535g19lansmaqkjplf0xc6qi5zsg"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-arm64"; version = "6.0.0"; sha256 = "1315hycfqlalh6k4zvvz7pz3dylpp0sr45j1v9avcb143hjqnav6"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-x64"; version = "6.0.0"; sha256 = "0r6jyxl3h1asj30la78skd5gsxgwjpvkspmkw1gglxfg85hnqc8w"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.osx-arm64"; version = "6.0.0"; sha256 = "1x254v25wilx4nh4dnjij4p9g0wsrqn9jyf4z48fa1bw1q3j3rba"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.osx-x64"; version = "6.0.0"; sha256 = "1hnqhvgjp342nx9s47w5sknmlpkfxbcfi50pa4vary2r7sv8ka2w"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.win-x64"; version = "6.0.0"; sha256 = "1j8cn97swc67ly7ca7m05akczrswbg0gjsk7473vad6770ph79vm"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-arm"; version = "6.0.3"; sha256 = "0s874cs94p1rxdy6n22ch3vr1ad1w0nkh7cnjxvxcjim2b4lfvln"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-arm64"; version = "6.0.3"; sha256 = "1jpw4s862j4aa7b7wchi03gxcy02j6hhpbsfbcayiyx6ry788i15"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-x64"; version = "6.0.3"; sha256 = "0rrrfgkr7rzhlnsnajvzb1ijkybp99d992bqxy9pbawmq7d60bdk"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.osx-arm64"; version = "6.0.3"; sha256 = "0s0xpqd0nc9kldfay5j1krbc1nyfasxw4xxjx1mwpnbr7n99wbms"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.osx-x64"; version = "6.0.3"; sha256 = "09whyl3i9mzy10n5zxlq66lj3l4p29hm75igmdip2fb376zxyam3"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.win-x64"; version = "6.0.3"; sha256 = "11kv50kll3iq88kn40f5v5qlq8mydv6y6xz2cbzjw4aadd44njwq"; }) (fetchNuGet { pname = "Microsoft.AspNetCore.JsonPatch"; version = "6.0.0-rc.1.21452.15"; sha256 = "0c3vnaag8gxlxij77n18m3hawpjkjjamsnq5kfjz5cvc7sfg3fwh"; }) (fetchNuGet { pname = "Microsoft.AspNetCore.Mvc.NewtonsoftJson"; version = "6.0.0-rc.1.21452.15"; sha256 = "1xyx358w4fqzxr9cy358agnm86rjijbnvikiqlngz2msgmldxi2z"; }) (fetchNuGet { pname = "Microsoft.CodeCoverage"; version = "17.0.0"; sha256 = "18gdbsqf6i79ld4ikqr4jhx9ndsggm865b5xj1xmnmgg12ydp19a"; }) @@ -74,24 +74,25 @@ (fetchNuGet { pname = "Microsoft.Extensions.Logging.Abstractions"; version = "5.0.0"; sha256 = "1yza38675dbv1qqnnhqm23alv2bbaqxp0pb7zinjmw8j2mr5r6wc"; }) (fetchNuGet { pname = "Microsoft.Extensions.Options"; version = "5.0.0"; sha256 = "1rdmgpg770x8qwaaa6ryc27zh93p697fcyvn5vkxp0wimlhqkbay"; }) (fetchNuGet { pname = "Microsoft.Extensions.Primitives"; version = "5.0.0"; sha256 = "0swqcknyh87ns82w539z1mvy804pfwhgzs97cr3nwqk6g5s42gd6"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-arm"; version = "6.0.0"; sha256 = "0m4q75iz6nj76sakab3265rzz969gk1rm2qwbvn0v60h3hflkqgb"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-arm64"; version = "6.0.0"; sha256 = "0aska6s99rfg13ngsaxr151a6sk8r68lv3mj8yv0bhvwcpln4342"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-arm64"; version = "6.0.0"; sha256 = "0z2whbviiw6kjqa7c2gj3j7fqq31m28iww66n7hvy3cnqcn3471k"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-x64"; version = "6.0.0"; sha256 = "188cbx99ahvksap9w20943p62fmzxa6fl133w4r7c6bjpsrm29a4"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.win-x64"; version = "6.0.0"; sha256 = "1016ld3kg4dav2yxxh0i32cy0ixv7s0wl9czydbhkbs2d8669kfx"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-arm"; version = "6.0.0"; sha256 = "159hq4fn2n5n2mkxw6wi4nhj0ifclpn7gxspqljlgczlhkm1vxqb"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-arm64"; version = "6.0.0"; sha256 = "146rbmk0svvqaf0c4msg67h17x4k4gd5kzsbb3iqvs14xfkli2xw"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-x64"; version = "6.0.0"; sha256 = "0qaylw18flrfl3vxnbp8wsiz29znidmn6dhv7k4v4jj2za16wmji"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.osx-arm64"; version = "6.0.0"; sha256 = "1ywkycp9llrfk4jcd7agaivlhn9pig70cj65xkfhjw1wx51756jc"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.osx-x64"; version = "6.0.0"; sha256 = "1njh3iky5wyxdrisz8xfpy7kzbsrvzfhpdl01xbavvz189x4ajqp"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.win-x64"; version = "6.0.0"; sha256 = "13x1nkigy3nhbr8gxalij7krmzxpciyq4i8k7jdy9278zs1lm5a6"; }) + (fetchNuGet { pname = "Microsoft.NET.Test.Sdk"; version = "17.0.0"; sha256 = "0bknyf5kig5icwjxls7pcn51x2b2qf91dz9qv67fl70v6cczaz2r"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-arm"; version = "6.0.3"; sha256 = "14lypnhdby9939l75y6i077x4ccb22yakzjrbapl8an438h09yf8"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-arm64"; version = "6.0.3"; sha256 = "1swbrmpsayy99ycwaq68dx9ydd5h3qv9brwig6ryff1xfn1llndq"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-x64"; version = "6.0.3"; sha256 = "1py3nrfvllqlnb9mhs0qwgy7c14n33b2hfb0qc49rx22sqv8ylbp"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-arm64"; version = "6.0.3"; sha256 = "0rshhsygm3id8wig8mqs846l8dck65drszpzjh1d00d1fk2bxzs4"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-x64"; version = "6.0.3"; sha256 = "0k9gc94cvn36p0v3pj296asg2sq9a8ah6lfw0xvvmd4hq2k72s79"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.win-x64"; version = "6.0.3"; sha256 = "1y428glba68s76icjzfl1v3p61pcz7rd78wybhabs8zq8w9cp2pj"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-arm"; version = "6.0.3"; sha256 = "0ws9vxias9iynhcajkl9lz4c8f6hc4b5spypxd0ha33lcjaj408a"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-arm64"; version = "6.0.3"; sha256 = "0gjj6p2nnxzhyrmmmwiyrll782famhll9lbgj8cji1i93amxq1pb"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-x64"; version = "6.0.3"; sha256 = "0f04srx6q0jk81a60n956hz32fdngzp0xmdb2x7gyl77gsq8yijj"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.osx-arm64"; version = "6.0.3"; sha256 = "003s3x2ffk4g76jy4b60n6vizly03amjbli4lngsy0wzc86c0ij1"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.osx-x64"; version = "6.0.3"; sha256 = "0180ipzzz9pc6f6l17rg5bxz1ghzbapmiqq66kdl33bmbny6vmm9"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.win-x64"; version = "6.0.3"; sha256 = "1rjkzs2013razi2xs943q62ys1jh8blhjcnj75qkvirf859d11qw"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.0.1"; sha256 = "01al6cfxp68dscl15z7rxfw9zvhm64dncsw09a1vmdkacsa2v6lr"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.1.0"; sha256 = "08vh1r12g6ykjygq5d3vq09zylgb84l63k49jc4v8faw9g93iqqm"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "2.0.0"; sha256 = "1fk2fk2639i7nzy58m9dvpdnzql4vb8yl8vr19r2fp8lmj9w2jr0"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "5.0.0"; sha256 = "0mwpwdflidzgzfx2dlpkvvnkgkr2ayaf0s80737h4wa35gaj11rc"; }) (fetchNuGet { pname = "Microsoft.NETCore.Targets"; version = "1.0.1"; sha256 = "0ppdkwy6s9p7x9jix3v4402wb171cdiibq7js7i13nxpdky7074p"; }) (fetchNuGet { pname = "Microsoft.NETCore.Targets"; version = "1.1.0"; sha256 = "193xwf33fbm0ni3idxzbr5fdq3i2dlfgihsac9jj7whj0gd902nh"; }) - (fetchNuGet { pname = "Microsoft.NET.Test.Sdk"; version = "17.0.0"; sha256 = "0bknyf5kig5icwjxls7pcn51x2b2qf91dz9qv67fl70v6cczaz2r"; }) (fetchNuGet { pname = "Microsoft.OpenApi"; version = "1.2.3"; sha256 = "07b19k89whj69j87afkz86gp9b3iybw8jqwvlgcn43m7fb2y99rr"; }) (fetchNuGet { pname = "Microsoft.TestPlatform.ObjectModel"; version = "17.0.0"; sha256 = "1bh5scbvl6ndldqv20sl34h4y257irm9ziv2wyfc3hka6912fhn7"; }) (fetchNuGet { pname = "Microsoft.TestPlatform.TestHost"; version = "17.0.0"; sha256 = "06mn31cgpp7d8lwdyjanh89prc66j37dchn74vrd9s588rq0y70r"; }) diff --git a/pkgs/applications/misc/abook/default.nix b/pkgs/applications/misc/abook/default.nix index de463cfd666..e822f869619 100644 --- a/pkgs/applications/misc/abook/default.nix +++ b/pkgs/applications/misc/abook/default.nix @@ -25,6 +25,6 @@ stdenv.mkDerivation rec { description = "Text-based addressbook program designed to use with mutt mail client"; license = lib.licenses.gpl2; maintainers = [ lib.maintainers.edwtjo ]; - platforms = with lib.platforms; linux; + platforms = with lib.platforms; unix; }; } diff --git a/pkgs/applications/misc/anytype/default.nix b/pkgs/applications/misc/anytype/default.nix index e80bb82ccec..5f09fba4cb7 100644 --- a/pkgs/applications/misc/anytype/default.nix +++ b/pkgs/applications/misc/anytype/default.nix @@ -2,13 +2,13 @@ let pname = "anytype"; - version = "0.23.5"; + version = "0.24.0"; name = "Anytype-${version}"; nameExecutable = pname; src = fetchurl { url = "https://at9412003.fra1.digitaloceanspaces.com/Anytype-${version}.AppImage"; name = "Anytype-${version}.AppImage"; - sha256 = "sha256-kVM/F0LsIgMtur8jHZzUWkFIcfHe0i8y9Zxe3z5SkVM="; + sha256 = "sha256-QyexUZNn7QGHjXYO/+1kUebTmAzdVpwG9Ile8Uh3i8Q="; }; appimageContents = appimageTools.extractType2 { inherit name src; }; in diff --git a/pkgs/applications/misc/appeditor/default.nix b/pkgs/applications/misc/appeditor/default.nix index cf1303422d2..9e38a208e17 100644 --- a/pkgs/applications/misc/appeditor/default.nix +++ b/pkgs/applications/misc/appeditor/default.nix @@ -43,6 +43,11 @@ stdenv.mkDerivation rec { ]; postPatch = '' + # Fix build with vala 0.56 + # https://github.com/donadigo/appeditor/pull/122 + substituteInPlace src/Application.vala \ + --replace "private static string? create_exec_filename;" "public static string? create_exec_filename;" + chmod +x meson/post_install.py patchShebangs meson/post_install.py ''; diff --git a/pkgs/applications/misc/dasel/default.nix b/pkgs/applications/misc/dasel/default.nix index eb17bf5c194..d8fd18f9de4 100644 --- a/pkgs/applications/misc/dasel/default.nix +++ b/pkgs/applications/misc/dasel/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "dasel"; - version = "1.23.0"; + version = "1.24.0"; src = fetchFromGitHub { owner = "TomWright"; repo = "dasel"; rev = "v${version}"; - sha256 = "sha256-MUF57begai6yMYLPC5dnyO9S39uHogB+Ie3qDA46Cn8="; + sha256 = "sha256-Em+WAI8G492h7FJTnTHFj5L7M4xBZhW4qC0MMc2JRUU="; }; vendorSha256 = "sha256-NP+Is7Dxz4LGzx5vpv8pJOJhodAYHia1JXYfhJD54as="; diff --git a/pkgs/applications/misc/font-manager/default.nix b/pkgs/applications/misc/font-manager/default.nix index bd6ae3d7478..e90c0a4ec18 100644 --- a/pkgs/applications/misc/font-manager/default.nix +++ b/pkgs/applications/misc/font-manager/default.nix @@ -2,7 +2,6 @@ , stdenv , fetchFromGitHub , meson -, fetchpatch , ninja , gettext , python3 @@ -26,24 +25,15 @@ stdenv.mkDerivation rec { pname = "font-manager"; - version = "0.8.7"; + version = "0.8.8"; src = fetchFromGitHub { owner = "FontManager"; repo = "master"; rev = version; - sha256 = "lqXjGSsiWaMJGyr1c2Wt/bs4F8q51mQ1+f6vbZRQzVs="; + sha256 = "sha256-M13Q9d2cKhc0tudkvw0zgqPAFTlmXwK+LltXeuDPWxo="; }; - patches = [ - # Fix compilation with latest Vala. - # https://github.com/FontManager/font-manager/issues/240 - (fetchpatch { - url = "https://github.com/FontManager/font-manager/commit/f9c4621389dae5999ca9d2f3c8402c2512a9ea60.patch"; - sha256 = "ZEJZSUYFLKmiHpVusO3ZUXMLUzJbbbCSqMjCtwlzPRY="; - }) - ]; - nativeBuildInputs = [ pkg-config meson diff --git a/pkgs/applications/misc/gallery-dl/default.nix b/pkgs/applications/misc/gallery-dl/default.nix index ed0e3e72be2..dc5dedbd1ad 100644 --- a/pkgs/applications/misc/gallery-dl/default.nix +++ b/pkgs/applications/misc/gallery-dl/default.nix @@ -2,11 +2,11 @@ buildPythonApplication rec { pname = "gallery_dl"; - version = "1.20.5"; + version = "1.21.0"; src = fetchPypi { inherit pname version; - sha256 = "sha256-UJAoxRybEYxQY+7l/szSj9fy1J552yaxF3MdaEmDiQQ="; + sha256 = "sha256-D/K+C7IX4VGv+FFYuPQEqwVYSjiDcSeElVunVMiFWI8="; }; propagatedBuildInputs = [ requests yt-dlp ]; diff --git a/pkgs/applications/misc/gramps/default.nix b/pkgs/applications/misc/gramps/default.nix index 531ce423737..7365d297e3b 100644 --- a/pkgs/applications/misc/gramps/default.nix +++ b/pkgs/applications/misc/gramps/default.nix @@ -55,6 +55,10 @@ in buildPythonApplication rec { runHook postInstall ''; + # https://github.com/NixOS/nixpkgs/issues/149812 + # https://nixos.org/manual/nixpkgs/stable/#ssec-gnome-hooks-gobject-introspection + strictDeps = false; + meta = with lib; { description = "Genealogy software"; homepage = "https://gramps-project.org"; diff --git a/pkgs/applications/misc/joshuto/default.nix b/pkgs/applications/misc/joshuto/default.nix index 7d4ec87b9f4..32018d7151d 100644 --- a/pkgs/applications/misc/joshuto/default.nix +++ b/pkgs/applications/misc/joshuto/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "joshuto"; - version = "0.9.2"; + version = "0.9.3"; src = fetchFromGitHub { owner = "kamiyaa"; repo = pname; rev = version; - sha256 = "sha256-9TGHSGYCzU6uAIO4zZ/6+B4oVPE6SD9Phl4dShylW5o="; + sha256 = "sha256-RbA7MM/3u2LJG6QD5f15E/XoLwHMkPasx0ht4PqV/jc="; }; - cargoSha256 = "sha256-g8YYOk2RW4GPdkWlvAxd5KFdV4S1l5yKEzNm9OAc8RI="; + cargoSha256 = "sha256-vhTfAoAwDJ9BjhgUEkV2H+KAetJR1YqwaZ7suF6yMXA="; buildInputs = lib.optional stdenv.isDarwin SystemConfiguration; diff --git a/pkgs/applications/misc/kchmviewer/default.nix b/pkgs/applications/misc/kchmviewer/default.nix new file mode 100644 index 00000000000..4d703bff0c2 --- /dev/null +++ b/pkgs/applications/misc/kchmviewer/default.nix @@ -0,0 +1,48 @@ +{ lib, stdenv, fetchFromGitHub, fetchpatch, qmake, wrapQtAppsHook, chmlib, libzip, qtwebengine }: + +stdenv.mkDerivation rec { + pname = "kchmviewer"; + version = "8.0"; + + src = fetchFromGitHub { + owner = "gyunaev"; + repo = pname; + rev = "RELEASE_${lib.replaceStrings [ "." ] [ "_" ] version}"; + sha256 = "sha256-YNpiBf6AFBCRbAZRPODvqGbQQedJJJrZFQIQyzIeBlw="; + }; + + patches = [ + # remove unused webkit + (fetchpatch { + url = "https://github.com/gyunaev/kchmviewer/commit/a4a3984465cb635822953350c571950ae726b539.patch"; + sha256 = "sha256-nHW18a4SrTG4fETJmKS4ojHXwnX1d1uN1m4H0GIuI28="; + }) + # QtWebengine fixes + (fetchpatch { + url = "https://github.com/gyunaev/kchmviewer/commit/9ac73e7ad15de08aab6b1198115be2eb44da7afe.patch"; + sha256 = "sha256-qg2ytqA2On7jg19WZmHIOU7vLQI2hoyqItySLEA64SY="; + }) + (fetchpatch { + url = "https://github.com/gyunaev/kchmviewer/commit/99a6d94bdfce9c4578cce82707e71863a71d1453.patch"; + sha256 = "sha256-o8JkaMmcJObmMt+o/6ooCAPCi+yRAWDAgxV+tR5eHfY="; + }) + ]; + + buildInputs = [ chmlib libzip qtwebengine ]; + + nativeBuildInputs = [ qmake wrapQtAppsHook ]; + + postInstall = '' + install -Dm755 bin/kchmviewer -t $out/bin + install -Dm644 packages/kchmviewer.png -t $out/share/pixmaps + install -Dm644 packages/kchmviewer.desktop -t $out/share/applications + ''; + + meta = with lib; { + description = "CHM (Winhelp) files viewer"; + homepage = "http://www.ulduzsoft.com/linux/kchmviewer/"; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ sikmir ]; + platforms = platforms.linux; + }; +} diff --git a/pkgs/applications/misc/kratos/default.nix b/pkgs/applications/misc/kratos/default.nix index a0b67042eca..043f607c010 100644 --- a/pkgs/applications/misc/kratos/default.nix +++ b/pkgs/applications/misc/kratos/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "kratos"; - version = "0.8.0-alpha.3"; + version = "0.8.3-alpha.1.pre.0"; src = fetchFromGitHub { owner = "ory"; repo = "kratos"; rev = "v${version}"; - sha256 = "0ihq2kxjackicxg0hrpmx6bsgz056xbaq3j8py37z2w6mwszarcg"; + sha256 = "1225paf0x6lb6cb3q5f4lyz0r426ifx4x8145q7nsc6v64srck2y"; }; - vendorSha256 = "175pckj30cm5xkbvsdvwzarvwapsylyjgj4ss8v5r1sa0fjpj008"; + vendorSha256 = "10zhxbccjsp6hbmk2lnvbag6c92hz703mcaigaj4wvlf7glpldm6"; subPackages = [ "." ]; @@ -25,7 +25,7 @@ buildGoModule rec { test/e2e/run.sh script/testenv.sh script/test-envs.sh - persistence/sql/migratest/update_fixtures.sh + script/debug-entrypoint.sh ) patchShebangs "''${files[@]}" diff --git a/pkgs/applications/misc/mob/default.nix b/pkgs/applications/misc/mob/default.nix index f6490906b55..2b9c847bac8 100644 --- a/pkgs/applications/misc/mob/default.nix +++ b/pkgs/applications/misc/mob/default.nix @@ -1,8 +1,8 @@ { lib , buildGoPackage , fetchFromGitHub - -, withSpeech ? true +, stdenv +, withSpeech ? !stdenv.isDarwin , makeWrapper , espeak-ng }: diff --git a/pkgs/applications/misc/moonlight-qt/default.nix b/pkgs/applications/misc/moonlight-qt/default.nix index 1a764dfaef3..c2981351749 100644 --- a/pkgs/applications/misc/moonlight-qt/default.nix +++ b/pkgs/applications/misc/moonlight-qt/default.nix @@ -57,5 +57,6 @@ stdenv.mkDerivation rec { license = licenses.gpl3Plus; maintainers = with maintainers; [ luc65r ]; platforms = platforms.all; + mainProgram = "moonlight"; }; } diff --git a/pkgs/applications/misc/prusa-slicer/super-slicer.nix b/pkgs/applications/misc/prusa-slicer/super-slicer.nix index 7a4d2ee1d25..c3037f0da8d 100644 --- a/pkgs/applications/misc/prusa-slicer/super-slicer.nix +++ b/pkgs/applications/misc/prusa-slicer/super-slicer.nix @@ -45,7 +45,7 @@ let meta = with lib; { inherit description; - homepage = "https://github.com/supermerili/SuperSlicer"; + homepage = "https://github.com/supermerill/SuperSlicer"; license = licenses.agpl3; maintainers = with maintainers; [ cab404 moredread ]; mainProgram = "superslicer"; diff --git a/pkgs/applications/misc/regextester/default.nix b/pkgs/applications/misc/regextester/default.nix index b7eb2367528..2a00cb92b9d 100644 --- a/pkgs/applications/misc/regextester/default.nix +++ b/pkgs/applications/misc/regextester/default.nix @@ -37,7 +37,6 @@ stdenv.mkDerivation rec { ]; buildInputs = [ - pantheon.elementary-icon-theme pantheon.granite glib libgee diff --git a/pkgs/applications/misc/sigi/default.nix b/pkgs/applications/misc/sigi/default.nix index 674432e7a02..62b8dd57659 100644 --- a/pkgs/applications/misc/sigi/default.nix +++ b/pkgs/applications/misc/sigi/default.nix @@ -2,11 +2,11 @@ rustPlatform.buildRustPackage rec { pname = "sigi"; - version = "3.0.2"; + version = "3.0.3"; src = fetchCrate { inherit pname version; - sha256 = "sha256-N+8DdokiYW5mHIQJisdTja8xMVGip37X6c/xBYnQaRU="; + sha256 = "sha256-tjhNE20GE1L8kvhdI5Mc90I75q8szOIV40vq2CBt98U="; }; nativeBuildInputs = [ installShellFiles ]; @@ -20,7 +20,7 @@ rustPlatform.buildRustPackage rec { installManPage sigi.1 ''; - cargoSha256 = "sha256-vO9ocTDcGt/T/sLCP+tCHXihV1H2liFDjI7OhhmPd3I="; + cargoSha256 = "sha256-0e0r6hfXGJmrc6tgCqq2dQXu2MhkThViZwdG3r3g028="; passthru.tests.version = testVersion { package = sigi; }; diff --git a/pkgs/applications/misc/stork/default.nix b/pkgs/applications/misc/stork/default.nix index 11face45145..48e2859fa84 100644 --- a/pkgs/applications/misc/stork/default.nix +++ b/pkgs/applications/misc/stork/default.nix @@ -9,16 +9,16 @@ rustPlatform.buildRustPackage rec { pname = "stork"; - version = "1.4.0"; + version = "1.4.1"; src = fetchFromGitHub { owner = "jameslittle230"; repo = "stork"; rev = "v${version}"; - sha256 = "sha256-9fylJcUuModemkBRnXeFfB1b+CD9IvTxW+CnlqaUb60="; + sha256 = "sha256-aBsxRLUufVUauySCxZKk/ZfcU/5KR7jOHmnx6mHmsFs="; }; - cargoSha256 = "sha256-j7OXl66xuTuP6hWJs+xHrwtaBGAYt02OESCN6FH3KX0="; + cargoSha256 = "sha256-oNoWGdXYfp47IpqU1twbORPOYrHjArNf43Zyeyat4Xs="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/applications/misc/tootle/default.nix b/pkgs/applications/misc/tootle/default.nix index f29c471d04b..c11ad8d1e98 100644 --- a/pkgs/applications/misc/tootle/default.nix +++ b/pkgs/applications/misc/tootle/default.nix @@ -68,6 +68,11 @@ stdenv.mkDerivation rec { ]; postPatch = '' + # Fix build with vala 0.56 + # https://github.com/bleakgrey/tootle/pull/346 + substituteInPlace src/Application.vala \ + --replace "public const GLib.ActionEntry[] app_entries" "private const GLib.ActionEntry[] app_entries" + chmod +x meson/post_install.py patchShebangs meson/post_install.py ''; diff --git a/pkgs/applications/networking/browsers/brave/default.nix b/pkgs/applications/networking/browsers/brave/default.nix index f5965767cd8..74e14615f81 100644 --- a/pkgs/applications/networking/browsers/brave/default.nix +++ b/pkgs/applications/networking/browsers/brave/default.nix @@ -91,11 +91,11 @@ in stdenv.mkDerivation rec { pname = "brave"; - version = "1.36.111"; + version = "1.36.116"; src = fetchurl { url = "https://github.com/brave/brave-browser/releases/download/v${version}/brave-browser_${version}_amd64.deb"; - sha256 = "bXZsUqLaP43wJV3Cehgblw1G179HgGhToSL36v5QseA="; + sha256 = "whGV0VgCm6JSyrcFQTKbM35b/qLQdBmChTrYuyC+OlI="; }; dontConfigure = true; diff --git a/pkgs/applications/networking/browsers/chromium/upstream-info.json b/pkgs/applications/networking/browsers/chromium/upstream-info.json index 8385ac2e009..3652a1b5a6b 100644 --- a/pkgs/applications/networking/browsers/chromium/upstream-info.json +++ b/pkgs/applications/networking/browsers/chromium/upstream-info.json @@ -1,8 +1,8 @@ { "stable": { - "version": "99.0.4844.51", - "sha256": "1qxsn8zvvvsnn0k7nn606rhaial8ikrlfh175msqpp50xibjxicp", - "sha256bin64": "04kqfppa88g2q54vp53avyyhqzrxljz49p4wqk76kq7fz2rm94x1", + "version": "99.0.4844.74", + "sha256": "165vzxv3xi4r9ia3qnqsr4p9ai0344w1pnq03c6jdq7x613lcprd", + "sha256bin64": "1xzr7qv4rcardl3apr8w22dn81lzqkklhp26qqlbdcylacqqji04", "deps": { "gn": { "version": "2022-01-10", @@ -12,16 +12,16 @@ } }, "chromedriver": { - "version": "99.0.4844.35", - "sha256_linux": "1q10mn34s03zy0nqcgrjd7ry53g4paxpwcki1bgicpcrwnjlzc3y", - "sha256_darwin": "0mcfry8vqqc8n1sgyn2azr8pc4lgjnkpnhz0ggjqm12njq0lfjfx", - "sha256_darwin_aarch64": "19wpqd5mq2vrgma899vbbdqhg660x47v4ppbz1r8dcg5r5y93x3s" + "version": "99.0.4844.51", + "sha256_linux": "1r5wbcfbj9s216jyjasmiscsrsix9ap3pplp12rznrwn4898p51y", + "sha256_darwin": "1nak8p5hdrw94lx73m9c110zrwag4qr6487dhplm3qfrnrkdh8wp", + "sha256_darwin_aarch64": "0hkcx6a8bcjlbmp6z3ld23mi1kpyjn2g7m3ns9qw6ns4x3rn5i3r" } }, "beta": { - "version": "100.0.4896.30", - "sha256": "06zfx9f6wv4j4fz7ss8pjlxfcsrwrvwqkmdk5bin7slxg4sq31fl", - "sha256bin64": "06s2p81grqrxl3p9ksy9q7s3s42ijmcw316nb51f7zx4ijk5hzya", + "version": "100.0.4896.46", + "sha256": "1qx22vadv9yd3n52pjn2sr153w70k3sxi2i8f99fdpil0kin8jkx", + "sha256bin64": "1g4xygj3946322aill7lk1qf0hi07bjn3awa17pkn1sgbl3gm8nr", "deps": { "gn": { "version": "2022-01-21", @@ -32,22 +32,22 @@ } }, "dev": { - "version": "101.0.4929.5", - "sha256": "0330vs0np23x390lfnc5gzmbnkdak590rzqpa7abpfx1gzj1rd3s", - "sha256bin64": "0670z86sz2wxpfxda32cirara7yg87g67cymh8ik3w99g5q7cb1d", + "version": "101.0.4947.0", + "sha256": "176bby8xis0j3ifvxxxjgklvs7yd7v71c5lc18qdjkgzv5qdx0sy", + "sha256bin64": "1rkpc25ff8vf1p7znpmaljj8gwcym34qg28b4anv8x9zvwn7w21s", "deps": { "gn": { - "version": "2022-03-01", + "version": "2022-03-14", "url": "https://gn.googlesource.com/gn", - "rev": "d7c2209cebcfe37f46dba7be4e1a7000ffc342fb", - "sha256": "0b024mr8bdsnkkd3qkh097a7w0gpicarijnsbpfgkf6imnkccg5w" + "rev": "bd99dbf98cbdefe18a4128189665c5761263bcfb", + "sha256": "0nql15ckjqkm001xajq3qyn4h4q80i7x6dm9zinxxr1a8q5lppx3" } } }, "ungoogled-chromium": { - "version": "99.0.4844.51", - "sha256": "1qxsn8zvvvsnn0k7nn606rhaial8ikrlfh175msqpp50xibjxicp", - "sha256bin64": "04kqfppa88g2q54vp53avyyhqzrxljz49p4wqk76kq7fz2rm94x1", + "version": "99.0.4844.74", + "sha256": "165vzxv3xi4r9ia3qnqsr4p9ai0344w1pnq03c6jdq7x613lcprd", + "sha256bin64": "1xzr7qv4rcardl3apr8w22dn81lzqkklhp26qqlbdcylacqqji04", "deps": { "gn": { "version": "2022-01-10", @@ -56,8 +56,8 @@ "sha256": "1103lf38h7412949j6nrk48m2vv2rrxacn42sjg33lg88nyv7skv" }, "ungoogled-patches": { - "rev": "99.0.4844.51-1", - "sha256": "0rs10jrng63lk4xgnqpgc8zxaj6lp70csbx6r0ihpv4z3rdn37va" + "rev": "99.0.4844.74-1", + "sha256": "1ki517fi55rz7ib2sq0q6gw1w1m2j4yakkpcgpmgvapg05s3zg7m" } } } diff --git a/pkgs/applications/networking/browsers/firefox-bin/default.nix b/pkgs/applications/networking/browsers/firefox-bin/default.nix index 8df80ab526a..50cc5718290 100644 --- a/pkgs/applications/networking/browsers/firefox-bin/default.nix +++ b/pkgs/applications/networking/browsers/firefox-bin/default.nix @@ -11,7 +11,6 @@ , gdk-pixbuf , glib , glibc -, gtk2 , gtk3 , libkrb5 , libX11 @@ -110,7 +109,6 @@ stdenv.mkDerivation { gdk-pixbuf glib glibc - gtk2 gtk3 libkrb5 mesa diff --git a/pkgs/applications/networking/browsers/firefox/packages.nix b/pkgs/applications/networking/browsers/firefox/packages.nix index 2da3783c358..f5a156943c7 100644 --- a/pkgs/applications/networking/browsers/firefox/packages.nix +++ b/pkgs/applications/networking/browsers/firefox/packages.nix @@ -7,10 +7,10 @@ in rec { firefox = common rec { pname = "firefox"; - version = "97.0.2"; + version = "98.0.1"; src = fetchurl { url = "mirror://mozilla/firefox/releases/${version}/source/firefox-${version}.source.tar.xz"; - sha512 = "efbf33723f5979025454b6cc183927afb4bc72a51c00b5d45940122da596b8ac99080f3a6a59f5dd85a725e356349ec57e7eba1c36cdab7d55a28b04895d274c"; + sha512 = "1434ff775e6cdc6d9a75fa0e6d07a4680ada86ecfd7b65208c597ed765e847d900b68df355e6bea6461f6d86ee7a8b2ce3117f23826ad144bd87dfe64ee39b42"; }; meta = { diff --git a/pkgs/applications/networking/browsers/opera/default.nix b/pkgs/applications/networking/browsers/opera/default.nix index 69ee0444c3d..bd7d42777f5 100644 --- a/pkgs/applications/networking/browsers/opera/default.nix +++ b/pkgs/applications/networking/browsers/opera/default.nix @@ -50,11 +50,11 @@ let in stdenv.mkDerivation rec { pname = "opera"; - version = "84.0.4316.21"; + version = "84.0.4316.31"; src = fetchurl { url = "${mirror}/${version}/linux/${pname}-stable_${version}_amd64.deb"; - sha256 = "sha256-CEKUd2QlZQJbpBO1t4oKmyd+uhPiCOY+eXtSrZf75e4="; + sha256 = "sha256-ypSnarhtJNQn3yOtydjmf6WmHAYbOfMg3xatCxTfIMY="; }; unpackCmd = "${dpkg}/bin/dpkg-deb -x $curSrc ."; diff --git a/pkgs/applications/networking/cawbird/default.nix b/pkgs/applications/networking/cawbird/default.nix index 74074d23242..dad293e51a2 100644 --- a/pkgs/applications/networking/cawbird/default.nix +++ b/pkgs/applications/networking/cawbird/default.nix @@ -23,14 +23,14 @@ }: stdenv.mkDerivation rec { - version = "1.4.2"; + version = "1.5"; pname = "cawbird"; src = fetchFromGitHub { owner = "IBBoard"; repo = "cawbird"; rev = "v${version}"; - sha256 = "17575cp5qcgsqf37y3xqg3vr6l2j8bbbkmy2c1l185rxghfacida"; + sha256 = "sha256-XFN9gfCoQDmYYysg1yrUoPPE0Ow40LttvV5Ltu0DTfI="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/networking/cluster/argo/default.nix b/pkgs/applications/networking/cluster/argo/default.nix index 07817e3ab0a..503952fa59a 100644 --- a/pkgs/applications/networking/cluster/argo/default.nix +++ b/pkgs/applications/networking/cluster/argo/default.nix @@ -19,16 +19,16 @@ let in buildGoModule rec { pname = "argo"; - version = "3.2.9"; + version = "3.3.0"; src = fetchFromGitHub { owner = "argoproj"; repo = "argo"; rev = "v${version}"; - sha256 = "sha256-lZ6FjWXhVc51BlioDSryeYe5aZeUhMMEde+kk2SwV20="; + sha256 = "sha256-BDHbbb3WqQvRJB1A4NInfvujjB3r/AMmVvos8i/CnyU="; }; - vendorSha256 = "sha256-hxSr0sNlz93JxOxnE2SnR6/OgCGK8DrJZxqQtSxfbj8="; + vendorSha256 = "sha256-YeSeaYOkNRjQgxsK9G7iPbVpfrPs4HRRFwfoUDxoCm0="; doCheck = false; diff --git a/pkgs/applications/networking/cluster/driftctl/default.nix b/pkgs/applications/networking/cluster/driftctl/default.nix index 4c22b9adca5..03f5ccda400 100644 --- a/pkgs/applications/networking/cluster/driftctl/default.nix +++ b/pkgs/applications/networking/cluster/driftctl/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "driftctl"; - version = "0.23.0"; + version = "0.23.2"; src = fetchFromGitHub { owner = "snyk"; repo = "driftctl"; rev = "v${version}"; - sha256 = "sha256-TUwTvCsWB+n+shVU1hTzLYROG9Wp4ySzJwAnappK7TY="; + sha256 = "sha256-hGwQdR2LF1uuq11d2BD4hVjcXpPCbRNovOqJpj0J1Sw="; }; vendorSha256 = "sha256-I0OCRhUvuaF4k5qqPaV6R24mrd9AG5GgQCCF6yodK0E="; diff --git a/pkgs/applications/networking/cluster/fluxcd/default.nix b/pkgs/applications/networking/cluster/fluxcd/default.nix index a583bf30895..d5762d938a3 100644 --- a/pkgs/applications/networking/cluster/fluxcd/default.nix +++ b/pkgs/applications/networking/cluster/fluxcd/default.nix @@ -1,9 +1,9 @@ { lib, buildGoModule, fetchFromGitHub, fetchzip, installShellFiles }: let - version = "0.27.3"; - sha256 = "08ax1033456hfm5qz0r671xm5ig0047nqp7xffyn9za498bm4i5q"; - manifestsSha256 = "165kspq10nvlihcb1460qmbw5r1mlzs5gliw01qa4mymvzmlggk7"; + version = "0.27.4"; + sha256 = "06951i332gr17nsbns8mh4kcjilqfw5w95shaznpaksx93f554g0"; + manifestsSha256 = "0fvzh7j3vi5hw8jbw2gisjnn53bffwnp7zm3dwcbv3svwpw7823d"; manifests = fetchzip { url = @@ -23,7 +23,7 @@ in buildGoModule rec { inherit sha256; }; - vendorSha256 = "sha256-ENSfec7iSKOkILgVCVnORpAia4D+vBjQAUXDA7EIvVQ="; + vendorSha256 = "sha256-7sHLXjyYMWSFckDPeVGJYK+nwhbRpD76tV334PCVYwA="; postUnpack = '' cp -r ${manifests} source/cmd/flux/manifests diff --git a/pkgs/applications/networking/cluster/fn-cli/default.nix b/pkgs/applications/networking/cluster/fn-cli/default.nix index df44c25cdc5..22e596dabf2 100644 --- a/pkgs/applications/networking/cluster/fn-cli/default.nix +++ b/pkgs/applications/networking/cluster/fn-cli/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "fn"; - version = "0.6.15"; + version = "0.6.17"; src = fetchFromGitHub { owner = "fnproject"; repo = "cli"; rev = version; - sha256 = "sha256-Gf4YxxyNALicb9GPpOW+Kzb2xrwcAU1XYOzXochH0LI="; + sha256 = "sha256-u/YISLlZFYlAUejSlaH7POA2WwKURPN8phFU86/caXU="; }; vendorSha256 = null; diff --git a/pkgs/applications/networking/cluster/hadoop/default.nix b/pkgs/applications/networking/cluster/hadoop/default.nix index 6a48cc8ada8..adb46540cba 100644 --- a/pkgs/applications/networking/cluster/hadoop/default.nix +++ b/pkgs/applications/networking/cluster/hadoop/default.nix @@ -15,6 +15,8 @@ , zlib , zstd , openssl +, glibc +, nixosTests }: with lib; @@ -22,7 +24,7 @@ with lib; assert elem stdenv.system [ "x86_64-linux" "x86_64-darwin" "aarch64-linux" "aarch64-darwin" ]; let - common = { pname, version, untarDir ? "${pname}-${version}", sha256, jdk, openssl ? null, nativeLibs ? [ ], libPatches ? "" }: + common = { pname, version, untarDir ? "${pname}-${version}", sha256, jdk, openssl ? null, nativeLibs ? [ ], libPatches ? "", tests }: stdenv.mkDerivation rec { inherit pname version jdk libPatches untarDir openssl; src = fetchurl { @@ -38,7 +40,10 @@ let installPhase = '' mkdir -p $out/{lib/${untarDir}/conf,bin,lib} mv * $out/lib/${untarDir} - + '' + optionalString stdenv.isLinux '' + # All versions need container-executor, but some versions can't use autoPatchelf because of broken SSL versions + patchelf --set-interpreter ${glibc.out}/lib64/ld-linux-x86-64.so.2 $out/lib/${untarDir}/bin/container-executor + '' + '' for n in $(find $out/lib/${untarDir}/bin -type f ! -name "*.*"); do makeWrapper "$n" "$out/bin/$(basename $n)"\ --set-default JAVA_HOME ${jdk.home}\ @@ -49,6 +54,8 @@ let done '' + libPatches; + passthru = { inherit tests; }; + meta = { homepage = "https://hadoop.apache.org/"; description = "Framework for distributed processing of large data sets across clusters of computers"; @@ -73,30 +80,34 @@ in { # Different version of hadoop support different java runtime versions # https://cwiki.apache.org/confluence/display/HADOOP/Hadoop+Java+Versions - hadoop_3_3 = - common - (rec { - pname = "hadoop"; - version = "3.3.1"; - untarDir = "${pname}-${version}"; - sha256 = rec { - x86_64-linux = "1b3v16ihysqaxw8za1r5jlnphy8dwhivdx2d0z64309w57ihlxxd"; - x86_64-darwin = x86_64-linux; - aarch64-linux = "00ln18vpi07jq2slk3kplyhcj8ad41n0yl880q5cihilk7daclxz"; - aarch64-darwin = aarch64-linux; - }; - - inherit openssl; - nativeLibs = [ stdenv.cc.cc.lib protobuf3_7 zlib snappy ]; - libPatches = '' - ln -s ${getLib cyrus_sasl}/lib/libsasl2.so $out/lib/${untarDir}/lib/native/libsasl2.so.2 - ln -s ${getLib openssl}/lib/libcrypto.so $out/lib/${untarDir}/lib/native/ - ln -s ${getLib zlib}/lib/libz.so.1 $out/lib/${untarDir}/lib/native/ - ln -s ${getLib zstd}/lib/libzstd.so.1 $out/lib/${untarDir}/lib/native/ - ln -s ${getLib bzip2}/lib/libbz2.so.1 $out/lib/${untarDir}/lib/native/ - '' + optionalString stdenv.isLinux "patchelf --add-rpath ${jdk.home}/lib/server $out/lib/${untarDir}/lib/native/libnativetask.so.1.0.0"; - jdk = jdk11_headless; - }); + hadoop_3_3 = common rec { + pname = "hadoop"; + version = "3.3.1"; + untarDir = "${pname}-${version}"; + sha256 = rec { + x86_64-linux = "1b3v16ihysqaxw8za1r5jlnphy8dwhivdx2d0z64309w57ihlxxd"; + x86_64-darwin = x86_64-linux; + aarch64-linux = "00ln18vpi07jq2slk3kplyhcj8ad41n0yl880q5cihilk7daclxz"; + aarch64-darwin = aarch64-linux; + }; + jdk = jdk11_headless; + inherit openssl; + # TODO: Package and add Intel Storage Acceleration Library + nativeLibs = [ stdenv.cc.cc.lib protobuf3_7 zlib snappy ]; + libPatches = '' + ln -s ${getLib cyrus_sasl}/lib/libsasl2.so $out/lib/${untarDir}/lib/native/libsasl2.so.2 + ln -s ${getLib openssl}/lib/libcrypto.so $out/lib/${untarDir}/lib/native/ + ln -s ${getLib zlib}/lib/libz.so.1 $out/lib/${untarDir}/lib/native/ + ln -s ${getLib zstd}/lib/libzstd.so.1 $out/lib/${untarDir}/lib/native/ + ln -s ${getLib bzip2}/lib/libbz2.so.1 $out/lib/${untarDir}/lib/native/ + '' + optionalString stdenv.isLinux '' + # libjvm.so for Java >=11 + patchelf --add-rpath ${jdk.home}/lib/server $out/lib/${untarDir}/lib/native/libnativetask.so.1.0.0 + # Java 8 has libjvm.so at a different path + patchelf --add-rpath ${jdk.home}/jre/lib/amd64/server $out/lib/${untarDir}/lib/native/libnativetask.so.1.0.0 + ''; + tests = nixosTests.hadoop; + }; hadoop_3_2 = common rec { pname = "hadoop"; version = "3.2.2"; @@ -104,11 +115,13 @@ in jdk = jdk8_headless; # not using native libs because of broken openssl_1_0_2 dependency # can be manually overriden + tests = nixosTests.hadoop_3_2; }; hadoop2 = common rec { pname = "hadoop"; version = "2.10.1"; sha256.x86_64-linux = "1w31x4bk9f2swnx8qxx0cgwfg8vbpm6cy5lvfnbbpl3rsjhmyg97"; jdk = jdk8_headless; + tests = nixosTests.hadoop2; }; } diff --git a/pkgs/applications/networking/cluster/helm/chart-testing/default.nix b/pkgs/applications/networking/cluster/helm/chart-testing/default.nix index 2f6dcbe0144..127ee9c6895 100644 --- a/pkgs/applications/networking/cluster/helm/chart-testing/default.nix +++ b/pkgs/applications/networking/cluster/helm/chart-testing/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "chart-testing"; - version = "3.5.0"; + version = "3.5.1"; src = fetchFromGitHub { owner = "helm"; repo = pname; rev = "v${version}"; - sha256 = "sha256-lXi778MTeVUBtepGjIkKAX1kDEaaVzQI1gTKfcpANC0="; + sha256 = "sha256-LNCzz5me60R/moFfdJhGMgUToFxADiPL02G4QCv0DLg="; }; - vendorSha256 = "sha256-pNevyTibnhUK8LSM1lVnmumFazXK86q4AZ2WKFt5jok="; + vendorSha256 = "sha256-38ufXHzGlZgEh6swD/GhWbIYdY5uYznKCQ9OaoyOEiY="; postPatch = '' substituteInPlace pkg/config/config.go \ diff --git a/pkgs/applications/networking/cluster/helmfile/default.nix b/pkgs/applications/networking/cluster/helmfile/default.nix index 1fde5343d29..2140134d846 100644 --- a/pkgs/applications/networking/cluster/helmfile/default.nix +++ b/pkgs/applications/networking/cluster/helmfile/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "helmfile"; - version = "0.143.0"; + version = "0.143.1"; src = fetchFromGitHub { owner = "roboll"; repo = "helmfile"; rev = "v${version}"; - sha256 = "sha256-3Kuj3umyD7fooa4alNJAm7Adu+7EQvoB7Gt/LRjgW94="; + sha256 = "sha256-eV2+lQVLv+bU/CmFFYM7CLjomXblT0XVZH5HVq0S+WM="; }; - vendorSha256 = "sha256-/MbKYPcZ7cOPQKT+nYQaaCiahKLcesrSVKNo8hKFlf0="; + vendorSha256 = "sha256-JHXSEOR/+ON5x0iQgaFsnb9hEDFf5/8TTh4T54qE/HE="; doCheck = false; diff --git a/pkgs/applications/networking/cluster/istioctl/default.nix b/pkgs/applications/networking/cluster/istioctl/default.nix index db9028d0af2..da633af2b8f 100644 --- a/pkgs/applications/networking/cluster/istioctl/default.nix +++ b/pkgs/applications/networking/cluster/istioctl/default.nix @@ -2,15 +2,15 @@ buildGoModule rec { pname = "istioctl"; - version = "1.13.1"; + version = "1.13.2"; src = fetchFromGitHub { owner = "istio"; repo = "istio"; rev = version; - sha256 = "sha256-lFuDFuzart7uvs6NGNvNYh7JRF5ROx0V8uYoThF2mIU="; + sha256 = "sha256-7YtszdwauTz9LfZ77d13fDU6vQm5hiJrIOiqpqIginQ="; }; - vendorSha256 = "sha256-cVbQUWgreVy5m6OdS+Ik/xvUuedlI75gM9zq4qto+gY="; + vendorSha256 = "sha256-AOcWkcw+2DcgBxvxRO/sdb339a7hmI7Oy5I4kW4oE+k="; doCheck = false; diff --git a/pkgs/applications/networking/cluster/k9s/default.nix b/pkgs/applications/networking/cluster/k9s/default.nix index a844f221675..48236cdc25e 100644 --- a/pkgs/applications/networking/cluster/k9s/default.nix +++ b/pkgs/applications/networking/cluster/k9s/default.nix @@ -1,4 +1,4 @@ -{ lib, buildGoModule, fetchFromGitHub }: +{ stdenv, lib, buildGoModule, fetchFromGitHub }: buildGoModule rec { pname = "k9s"; @@ -21,7 +21,8 @@ buildGoModule rec { preCheck = "export HOME=$(mktemp -d)"; - doCheck = true; + # TODO investigate why some config tests are failing + doCheck = !(stdenv.isDarwin && stdenv.isAarch64); meta = with lib; { description = "Kubernetes CLI To Manage Your Clusters In Style"; diff --git a/pkgs/applications/networking/cluster/kn/default.nix b/pkgs/applications/networking/cluster/kn/default.nix index d5faebdab3c..93ccd873f77 100644 --- a/pkgs/applications/networking/cluster/kn/default.nix +++ b/pkgs/applications/networking/cluster/kn/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "kn"; - version = "1.3.0"; + version = "1.3.1"; src = fetchFromGitHub { owner = "knative"; repo = "client"; rev = "knative-v${version}"; - sha256 = "sha256-PxiYxDHcA95MinNpEcXul2cYrV/VB6gThhYCZANqAGY="; + sha256 = "sha256-xpSnirdEZ/Cua/wicu62HzeDm0E8Xo/Jt2eMfUS7mDo="; }; vendorSha256 = null; diff --git a/pkgs/applications/networking/cluster/kube-capacity/default.nix b/pkgs/applications/networking/cluster/kube-capacity/default.nix index 0a2386d37ce..c7d14748e80 100644 --- a/pkgs/applications/networking/cluster/kube-capacity/default.nix +++ b/pkgs/applications/networking/cluster/kube-capacity/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "kube-capacity"; - version = "0.7.0"; + version = "0.7.1"; src = fetchFromGitHub { rev = "v${version}"; owner = "robscott"; repo = pname; - sha256 = "sha256-jop1dn+D0A6BkR1UCMrU9qcbZ1AHVth430cTd+kUYJw="; + sha256 = "sha256-+1qewL8N3WTS7GW6fpL2+RPbFQQ/3DDMgShtBi+lRtg="; }; - vendorSha256 = "sha256-PkCUwe3S1bq37ME2WyTUnwEcbnFcNI0eaI9yW/HZ1uw="; + vendorSha256 = "sha256-sMobdarMMktf34LbQnyZ6sgbfiJhWxWSQR0F+4x5J58="; meta = with lib; { description = diff --git a/pkgs/applications/networking/cluster/kubernetes/default.nix b/pkgs/applications/networking/cluster/kubernetes/default.nix index 8d11bc28017..e4203f0028a 100644 --- a/pkgs/applications/networking/cluster/kubernetes/default.nix +++ b/pkgs/applications/networking/cluster/kubernetes/default.nix @@ -21,13 +21,13 @@ stdenv.mkDerivation rec { pname = "kubernetes"; - version = "1.23.4"; + version = "1.23.5"; src = fetchFromGitHub { owner = "kubernetes"; repo = "kubernetes"; rev = "v${version}"; - sha256 = "sha256-srJHW/wvrFKKgxVwJB4h0FGeaT7iSJYOTtSeTkcR3FE="; + sha256 = "sha256-LhJ3gThcsWnawSOmHSzWOG8tfODIPo4dJTMeLKmvMdM="; }; nativeBuildInputs = [ makeWrapper which go rsync installShellFiles ]; diff --git a/pkgs/applications/networking/cluster/qbec/default.nix b/pkgs/applications/networking/cluster/qbec/default.nix index 3d34a65e292..8dcb08247e3 100644 --- a/pkgs/applications/networking/cluster/qbec/default.nix +++ b/pkgs/applications/networking/cluster/qbec/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "qbec"; - version = "0.15.1"; + version = "0.15.2"; src = fetchFromGitHub { owner = "splunk"; repo = "qbec"; rev = "v${version}"; - sha256 = "sha256-cXU+LnOCsGg+iwH5c7cKVi2Htw45AGxyjJFKXKbTkUo="; + sha256 = "sha256-js/UjnNYRW7s3b4TeprhmBe4cDLDYDrMeLtpASI9aN4="; }; - vendorSha256 = "sha256-CiVAzFN/ygIiyhZKYtJ197TZO3ppL/emWSj4hAlIanc="; + vendorSha256 = "sha256-oEbKk9cMbI0ZWXrfM8Y19OF/A75mwHl0C/PJx0oTOBo="; doCheck = false; diff --git a/pkgs/applications/networking/cluster/spark/default.nix b/pkgs/applications/networking/cluster/spark/default.nix index 7876eb1c752..7770f98afe5 100644 --- a/pkgs/applications/networking/cluster/spark/default.nix +++ b/pkgs/applications/networking/cluster/spark/default.nix @@ -1,13 +1,26 @@ -{ lib, stdenv, fetchzip, makeWrapper, jdk8, python3Packages, extraPythonPackages ? [], coreutils, hadoop -, RSupport? true, R +{ lib +, stdenv +, fetchzip +, makeWrapper +, jdk8 +, python3Packages +, extraPythonPackages ? [ ] +, coreutils +, hadoop +, RSupport ? true +, R }: with lib; let - spark = { pname, version, src }: + spark = { pname, version, sha256 }: stdenv.mkDerivation rec { - inherit pname version src; + inherit pname version; + src = fetchzip { + url = "mirror://apache/spark/${pname}-${version}/${pname}-${version}-bin-without-hadoop.tgz"; + sha256 = sha256; + }; nativeBuildInputs = [ makeWrapper ]; buildInputs = [ jdk8 python3Packages.python ] ++ extraPythonPackages @@ -45,31 +58,29 @@ let ''; meta = { - description = "Apache Spark is a fast and general engine for large-scale data processing"; - homepage = "https://spark.apache.org/"; - license = lib.licenses.asl20; - platforms = lib.platforms.all; - maintainers = with maintainers; [ thoughtpolice offline kamilchm illustris ]; + description = "Apache Spark is a fast and general engine for large-scale data processing"; + homepage = "https://spark.apache.org/"; + license = lib.licenses.asl20; + platforms = lib.platforms.all; + maintainers = with maintainers; [ thoughtpolice offline kamilchm illustris ]; repositories.git = "git://git.apache.org/spark.git"; }; }; -in { - spark3 = spark rec { +in +{ + spark_3_2 = spark rec { + pname = "spark"; + version = "3.2.1"; + sha256 = "0kxdqczwmj6pray0h8h1qhygni9m82jzznw5fbv9hrxrkq1v182d"; + }; + spark_3_1 = spark rec { pname = "spark"; version = "3.1.2"; - - src = fetchzip { - url = "mirror://apache/spark/${pname}-${version}/${pname}-${version}-bin-without-hadoop.tgz"; - sha256 = "1bgh2y6jm7wqy6yc40rx68xkki31i3jiri2yixb1bm0i9pvsj9yf"; - }; + sha256 = "1bgh2y6jm7wqy6yc40rx68xkki31i3jiri2yixb1bm0i9pvsj9yf"; }; - spark2 = spark rec { + spark_2_4 = spark rec { pname = "spark"; version = "2.4.8"; - - src = fetchzip { - url = "mirror://apache/spark/${pname}-${version}/${pname}-${version}-bin-without-hadoop.tgz"; - sha256 = "1mkyq0gz9fiav25vr0dba5ivp0wh0mh7kswwnx8pvsmb6wbwyfxv"; - }; + sha256 = "1mkyq0gz9fiav25vr0dba5ivp0wh0mh7kswwnx8pvsmb6wbwyfxv"; }; } diff --git a/pkgs/applications/networking/cluster/terraform-providers/providers.json b/pkgs/applications/networking/cluster/terraform-providers/providers.json index 8ff0628a661..457b9d342cc 100644 --- a/pkgs/applications/networking/cluster/terraform-providers/providers.json +++ b/pkgs/applications/networking/cluster/terraform-providers/providers.json @@ -772,12 +772,12 @@ }, "oci": { "owner": "oracle", - "provider-source-address": "registry.terraform.io/hashicorp/oci", + "provider-source-address": "registry.terraform.io/oracle/oci", "repo": "terraform-provider-oci", - "rev": "v4.67.0", - "sha256": "sha256-kgnyGLF6UbWRbrjXDkh7y11jx4JO3hFo7/qdJzwX0rU=", + "rev": "v4.68.0", + "sha256": "sha256-f1Nk5NurQvJuGyGrZQnZIXIpaH1qFAX+oTBNan6rORI=", "vendorSha256": null, - "version": "4.67.0" + "version": "4.68.0" }, "okta": { "owner": "okta", diff --git a/pkgs/applications/networking/cluster/tfswitch/default.nix b/pkgs/applications/networking/cluster/tfswitch/default.nix index f8473481cc0..3e872c27142 100644 --- a/pkgs/applications/networking/cluster/tfswitch/default.nix +++ b/pkgs/applications/networking/cluster/tfswitch/default.nix @@ -1,16 +1,16 @@ { buildGoModule, lib, fetchFromGitHub }: buildGoModule rec { pname = "tfswitch"; - version = "0.13.1201"; + version = "0.13.1218"; src = fetchFromGitHub { owner = "warrensbox"; repo = "terraform-switcher"; rev = version; - sha256 = "sha256-gJa8oVdgerDi0GdTSNus5rHLsFuzg8ZqVeKTMuPXu0o="; + sha256 = "sha256-RJdbNXO+6TqFLapWiZ1UeXGS5522ykQvhhNDEHPr8xE="; }; - vendorSha256 = "sha256-z3UDrwlMHFFH56U3oylSWE3wqWOCA4RI2smafHHwYkQ="; + vendorSha256 = "sha256-Xqgki072Iy+snRriPVJ9oaDNJ/LiKL+AuU+eVw0zlDU="; # Disable tests since it requires network access and relies on the # presence of release.hashicorp.com diff --git a/pkgs/applications/networking/cluster/tgswitch/default.nix b/pkgs/applications/networking/cluster/tgswitch/default.nix index 560e593ba19..5f669a6b9d8 100644 --- a/pkgs/applications/networking/cluster/tgswitch/default.nix +++ b/pkgs/applications/networking/cluster/tgswitch/default.nix @@ -1,13 +1,13 @@ { buildGoPackage, lib, fetchFromGitHub }: buildGoPackage rec { pname = "tgswitch"; - version = "0.5.382"; + version = "0.5.389"; src = fetchFromGitHub { owner = "warrensbox"; repo = "tgswitch"; rev = version; - sha256 = "sha256-DbPf1o1XlXLpuYSrNMRwHRqi/urQhSfzPW5BPIvZC/Y="; + sha256 = "sha256-6hErfI7LEJFgOoJR8IF9jTSBwqbQYeGiwdeJShqxVQ0="; }; goPackagePath = "github.com/warrensbox/tgswitch"; diff --git a/pkgs/applications/networking/cluster/tilt/default.nix b/pkgs/applications/networking/cluster/tilt/default.nix index 5193d1de5df..1bd10c28acd 100644 --- a/pkgs/applications/networking/cluster/tilt/default.nix +++ b/pkgs/applications/networking/cluster/tilt/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { /* Do not use "dev" as a version. If you do, Tilt will consider itself running in development environment and try to serve assets from the source tree, which is not there once build completes. */ - version = "0.25.2"; + version = "0.25.3"; src = fetchFromGitHub { owner = "tilt-dev"; repo = pname; rev = "v${version}"; - sha256 = "sha256-L5pXq4vfus8gpQMO+j2+WXMPkk3sv3WeeeYrBFd+w7s="; + sha256 = "sha256-YB2oKyO+pJSzx/ZgPFhP8+5auKxX/4sQyv1qW9B5PGg="; }; vendorSha256 = null; diff --git a/pkgs/applications/networking/cluster/velero/default.nix b/pkgs/applications/networking/cluster/velero/default.nix index e0042e43efb..88c3a31fd2d 100644 --- a/pkgs/applications/networking/cluster/velero/default.nix +++ b/pkgs/applications/networking/cluster/velero/default.nix @@ -2,14 +2,14 @@ buildGoModule rec { pname = "velero"; - version = "1.8.0"; + version = "1.8.1"; src = fetchFromGitHub { owner = "vmware-tanzu"; repo = "velero"; rev = "v${version}"; - sha256 = "sha256-tQGAzQFrpCUAEzdd5vr4j2oIb6TKeN9DQm96TdP0n40="; + sha256 = "sha256-oiYr9JQlJVxjZxGhZyOIUy934KedBmDhzK+71qmaD58="; }; ldflags = [ diff --git a/pkgs/applications/networking/cluster/werf/default.nix b/pkgs/applications/networking/cluster/werf/default.nix index f8dcbc0183a..c55ccfa02fa 100644 --- a/pkgs/applications/networking/cluster/werf/default.nix +++ b/pkgs/applications/networking/cluster/werf/default.nix @@ -11,15 +11,15 @@ buildGoModule rec { pname = "werf"; - version = "1.2.73"; + version = "1.2.77"; src = fetchFromGitHub { owner = "werf"; repo = "werf"; rev = "v${version}"; - sha256 = "sha256-E16p40Pmr9o2946XlO3TUE/xUueG0NBWux23MgAVLlI="; + sha256 = "sha256-JmadwNERjexnJN+fBUjgMkvPtAaTbb7GITPsZlx2vik="; }; - vendorSha256 = "sha256-NHeUj1JWRqElY2BpQ+7ANqwlOYQ5H2R00LGqktcsoF4="; + vendorSha256 = "sha256-IPQiS1GgNP+k/INv3f3VitoHActC3MrRys905nTSXyI="; proxyVendor = true; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/applications/networking/instant-messengers/alfaview/default.nix b/pkgs/applications/networking/instant-messengers/alfaview/default.nix index 764ba6a0d79..ebed984c4d5 100644 --- a/pkgs/applications/networking/instant-messengers/alfaview/default.nix +++ b/pkgs/applications/networking/instant-messengers/alfaview/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation rec { pname = "alfaview"; - version = "8.37.0"; + version = "8.40.0"; src = fetchurl { url = "https://production-alfaview-assets.alfaview.com/stable/linux/${pname}_${version}.deb"; - sha256 = "sha256-hU4tqDu95ej8ChiWJq3ZPhEwxBcmTQkA/n///pPVa5U="; + sha256 = "sha256-meiIDIG7OXxF2aclHA/8FN8aSz5KWJliDbm2p/flD4k="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/networking/instant-messengers/cinny/default.nix b/pkgs/applications/networking/instant-messengers/cinny/default.nix index 1e2dc88a4d5..940d0b6b92b 100644 --- a/pkgs/applications/networking/instant-messengers/cinny/default.nix +++ b/pkgs/applications/networking/instant-messengers/cinny/default.nix @@ -4,11 +4,11 @@ let configOverrides = writeText "cinny-config-overrides.json" (builtins.toJSON conf); in stdenv.mkDerivation rec { pname = "cinny"; - version = "1.8.0"; + version = "1.8.2"; src = fetchurl { url = "https://github.com/ajbura/cinny/releases/download/v${version}/cinny-v${version}.tar.gz"; - sha256 = "0pbapzl3pfx87ns4vp7088kkhl34c0ihbq90r3d0iz6sa16mcs79"; + sha256 = "sha256-0harFaO1MWzTmN/Q3e38MC2O7P9yVeQ5ZSy0yiGbtCs="; }; installPhase = '' diff --git a/pkgs/applications/networking/instant-messengers/element/element-desktop-package.json b/pkgs/applications/networking/instant-messengers/element/element-desktop-package.json index 6d3353c2515..984a9cb501d 100644 --- a/pkgs/applications/networking/instant-messengers/element/element-desktop-package.json +++ b/pkgs/applications/networking/instant-messengers/element/element-desktop-package.json @@ -2,7 +2,7 @@ "name": "element-desktop", "productName": "Element", "main": "lib/electron-main.js", - "version": "1.10.6", + "version": "1.10.7", "description": "A feature-rich client for Matrix.org", "author": "Element", "repository": { diff --git a/pkgs/applications/networking/instant-messengers/element/pin.json b/pkgs/applications/networking/instant-messengers/element/pin.json index d1fb0fe1c62..f75dfc66ca9 100644 --- a/pkgs/applications/networking/instant-messengers/element/pin.json +++ b/pkgs/applications/networking/instant-messengers/element/pin.json @@ -1,6 +1,6 @@ { - "version": "1.10.6", - "desktopSrcHash": "TJGYavawLDLbP9Sg7HxIcOkr7hcTfAwk4fyOOEv4KhI=", + "version": "1.10.7", + "desktopSrcHash": "HkGny9t8dNzVGyyqgr4tABbFZgWV4xqGZt9xH4ejkew=", "desktopYarnHash": "038rqg26dn8chzscck5mlhnw2viy6gr8pjb7zrcmi7ipx9h038a0", - "webHash": "1wax4h5gfcq4giyq1igsix748cngky487kwvf69zb1gz95hjds9r" + "webHash": "0gim79a1zpfc56ca5fndp2whmlv9jz1s32z666i268xppn4z53k1" } diff --git a/pkgs/applications/networking/instant-messengers/ferdi/default.nix b/pkgs/applications/networking/instant-messengers/ferdi/default.nix index 92e39f091b1..0a44a37cf4b 100644 --- a/pkgs/applications/networking/instant-messengers/ferdi/default.nix +++ b/pkgs/applications/networking/instant-messengers/ferdi/default.nix @@ -17,10 +17,10 @@ in mkFranzDerivation' rec { pname = "ferdi"; name = "Ferdi"; - version = "5.7.0"; + version = "5.8.0"; src = fetchurl { url = "https://github.com/getferdi/ferdi/releases/download/v${version}/ferdi_${version}_amd64.deb"; - sha256 = "sha256-WwtnYNjXHk80o1wMsEBoaT9j0+4TWTfWhuVpGHaZB7c="; + sha256 = "sha256-Dd/iH9dtr4WvM++bSURF8kI6BsF6uBiSFviC/ik2H+o="; }; extraBuildInputs = [ xorg.libxshmfence ]; meta = with lib; { diff --git a/pkgs/applications/networking/instant-messengers/neochat/default.nix b/pkgs/applications/networking/instant-messengers/neochat/default.nix index 6de6922913f..a8e73ad1098 100644 --- a/pkgs/applications/networking/instant-messengers/neochat/default.nix +++ b/pkgs/applications/networking/instant-messengers/neochat/default.nix @@ -8,6 +8,7 @@ , kconfig , kdbusaddons , ki18n +, kio , kirigami2 , kitemmodels , knotifications @@ -16,23 +17,25 @@ , libquotient , libsecret , olm +, qcoro , qqc2-desktop-style , qtgraphicaleffects , qtkeychain , qtmultimedia , qtquickcontrols2 +, sonnet }: mkDerivation rec { pname = "neochat"; - version = "1.2"; + version = "22.02"; src = fetchFromGitLab { domain = "invent.kde.org"; owner = "network"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Kpv7BY/qS0A3xFlYFhz1RRNwQVsyhOTHHGDbWRTTv1I="; + sha256 = "sha256-7EBnHuwpyJ/bGrCldZHWOwcnJWDIDaNWZXHkCYkOTjs="; }; nativeBuildInputs = [ cmake extra-cmake-modules pkg-config ]; @@ -41,6 +44,7 @@ mkDerivation rec { cmark kconfig kdbusaddons + kio ki18n kirigami2 kitemmodels @@ -50,11 +54,13 @@ mkDerivation rec { libquotient libsecret olm + qcoro qtgraphicaleffects qtkeychain qtmultimedia qtquickcontrols2 qqc2-desktop-style + sonnet ]; meta = with lib; { diff --git a/pkgs/applications/networking/instant-messengers/signalbackup-tools/default.nix b/pkgs/applications/networking/instant-messengers/signalbackup-tools/default.nix index 4766b796a35..f03a91faa23 100644 --- a/pkgs/applications/networking/instant-messengers/signalbackup-tools/default.nix +++ b/pkgs/applications/networking/instant-messengers/signalbackup-tools/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "signalbackup-tools"; - version = "20220303"; + version = "20220316"; src = fetchFromGitHub { owner = "bepaald"; repo = pname; rev = version; - sha256 = "sha256-3fT9cHosg/A/JowIARQ46OxmsQWFOBb7tIiRWVNfUo4="; + sha256 = "sha256-c9eqY3KBzCrNOLNf1DGpARmxGzwga3+tBg3e7Yr+Rb8="; }; # Remove when Apple SDK is >= 10.13 diff --git a/pkgs/applications/networking/instant-messengers/telegram/kotatogram-desktop/default.nix b/pkgs/applications/networking/instant-messengers/telegram/kotatogram-desktop/default.nix index cb4f3e5e5d1..ce5dc0e266e 100644 --- a/pkgs/applications/networking/instant-messengers/telegram/kotatogram-desktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/telegram/kotatogram-desktop/default.nix @@ -1,53 +1,231 @@ -{ mkDerivation, lib, fetchFromGitHub, callPackage -, pkg-config, cmake, ninja, python3, wrapGAppsHook, wrapQtAppsHook -, qtbase, qtimageformats, gtk3, libsForQt5, lz4, xxHash -, ffmpeg, openalSoft, minizip, libopus, alsa-lib, libpulseaudio, range-v3 -, tl-expected, hunspell, glibmm, webkitgtk -# Transitive dependencies: -, pcre, xorg, util-linux, libselinux, libsepol, libepoxy -, at-spi2-core, libXtst, libthai, libdatrie +{ lib +, stdenv +, fetchFromGitHub +, callPackage +, pkg-config +, cmake +, ninja +, clang +, python3 +, wrapGAppsHook +, wrapQtAppsHook +, removeReferencesTo +, extra-cmake-modules +, qtbase +, qtimageformats +, qtsvg +, kwayland +, lz4 +, xxHash +, ffmpeg +, openalSoft +, minizip +, libopus +, alsa-lib +, libpulseaudio +, range-v3 +, tl-expected +, hunspell +, glibmm +, webkitgtk +, jemalloc +, rnnoise +, abseil-cpp +, microsoft_gsl +, wayland +, libicns +, Cocoa +, CoreFoundation +, CoreServices +, CoreText +, CoreGraphics +, CoreMedia +, OpenGL +, AudioUnit +, ApplicationServices +, Foundation +, AGL +, Security +, SystemConfiguration +, Carbon +, AudioToolbox +, VideoToolbox +, VideoDecodeAcceleration +, AVFoundation +, CoreAudio +, CoreVideo +, CoreMediaIO +, QuartzCore +, AppKit +, CoreWLAN +, WebKit +, IOKit +, GSS +, MediaPlayer +, IOSurface +, Metal +, MetalKit +, withWebKit ? false }: with lib; let - tg_owt = callPackage ./tg_owt.nix {}; -in mkDerivation rec { + tg_owt = callPackage ./tg_owt.nix { + abseil-cpp = (abseil-cpp.override { + # abseil-cpp should use the same compiler + inherit stdenv; + cxxStandard = "20"; + }).overrideAttrs (_: { + # https://github.com/NixOS/nixpkgs/issues/130963 + NIX_LDFLAGS = optionalString stdenv.isDarwin "-lc++abi"; + }); + + # tg_owt should use the same compiler + inherit stdenv; + + inherit Cocoa AppKit IOKit IOSurface Foundation AVFoundation CoreMedia VideoToolbox + CoreGraphics CoreVideo OpenGL Metal MetalKit CoreFoundation ApplicationServices; + }; +in +stdenv.mkDerivation rec { pname = "kotatogram-desktop"; - version = "1.4.1"; + version = "1.4.9"; src = fetchFromGitHub { owner = "kotatogram"; repo = "kotatogram-desktop"; rev = "k${version}"; - sha256 = "07z56gz3sk45n5j0gw9p9mxrbwixxsmp7lvqc6lqnxmglz6knc1d"; + sha256 = "sha256-6bF/6fr8mJyyVg53qUykysL7chuewtJB8E22kVyxjHw="; fetchSubmodules = true; }; - postPatch = '' + patches = [ + ./shortcuts-binary-path.patch + # let it build with nixpkgs 10.12 sdk + ./kotato-10.12-sdk.patch + ]; + + postPatch = optionalString stdenv.isLinux '' + substituteInPlace Telegram/ThirdParty/libtgvoip/os/linux/AudioInputALSA.cpp \ + --replace '"libasound.so.2"' '"${alsa-lib}/lib/libasound.so.2"' + substituteInPlace Telegram/ThirdParty/libtgvoip/os/linux/AudioOutputALSA.cpp \ + --replace '"libasound.so.2"' '"${alsa-lib}/lib/libasound.so.2"' + substituteInPlace Telegram/ThirdParty/libtgvoip/os/linux/AudioPulse.cpp \ + --replace '"libpulse.so.0"' '"${libpulseaudio}/lib/libpulse.so.0"' + '' + optionalString (stdenv.isLinux && withWebKit) '' + substituteInPlace Telegram/lib_webview/webview/platform/linux/webview_linux_webkit_gtk.cpp \ + --replace '"libwebkit2gtk-4.0.so.37"' '"${webkitgtk}/lib/libwebkit2gtk-4.0.so.37"' + '' + optionalString stdenv.isDarwin '' substituteInPlace Telegram/CMakeLists.txt \ - --replace '"''${TDESKTOP_LAUNCHER_BASENAME}.appdata.xml"' '"''${TDESKTOP_LAUNCHER_BASENAME}.metainfo.xml"' + --replace 'COMMAND iconutil' 'COMMAND png2icns' \ + --replace '--convert icns' "" \ + --replace '--output AppIcon.icns' 'AppIcon.icns' \ + --replace "\''${appicon_path}" "\''${appicon_path}/icon_16x16.png \''${appicon_path}/icon_32x32.png \''${appicon_path}/icon_128x128.png \''${appicon_path}/icon_256x256.png \''${appicon_path}/icon_512x512.png" ''; # We want to run wrapProgram manually (with additional parameters) - dontWrapGApps = true; - dontWrapQtApps = true; + dontWrapGApps = stdenv.isLinux; + dontWrapQtApps = stdenv.isLinux && withWebKit; - nativeBuildInputs = [ pkg-config cmake ninja python3 wrapGAppsHook wrapQtAppsHook ]; + nativeBuildInputs = [ + pkg-config + cmake + ninja + python3 + wrapQtAppsHook + removeReferencesTo + ] ++ optionals stdenv.isLinux [ + # to build bundled libdispatch + clang + extra-cmake-modules + ] ++ optionals (stdenv.isLinux && withWebKit) [ + wrapGAppsHook + ]; buildInputs = [ - qtbase qtimageformats gtk3 libsForQt5.kwayland libsForQt5.libdbusmenu lz4 xxHash - ffmpeg openalSoft minizip libopus alsa-lib libpulseaudio range-v3 - tl-expected hunspell glibmm webkitgtk + qtbase + qtimageformats + qtsvg + lz4 + xxHash + ffmpeg + openalSoft + minizip + libopus + range-v3 + tl-expected + rnnoise tg_owt - # Transitive dependencies: - pcre xorg.libXdmcp util-linux libselinux libsepol libepoxy - at-spi2-core libXtst libthai libdatrie + microsoft_gsl + ] ++ optionals stdenv.isLinux [ + kwayland + alsa-lib + libpulseaudio + hunspell + glibmm + jemalloc + wayland + ] ++ optionals (stdenv.isLinux && withWebKit) [ + webkitgtk + ] ++ optionals stdenv.isDarwin [ + Cocoa + CoreFoundation + CoreServices + CoreText + CoreGraphics + CoreMedia + OpenGL + AudioUnit + ApplicationServices + Foundation + AGL + Security + SystemConfiguration + Carbon + AudioToolbox + VideoToolbox + VideoDecodeAcceleration + AVFoundation + CoreAudio + CoreVideo + CoreMediaIO + QuartzCore + AppKit + CoreWLAN + WebKit + IOKit + GSS + MediaPlayer + IOSurface + Metal + libicns ]; - cmakeFlags = [ "-DTDESKTOP_API_TEST=ON" ]; + # https://github.com/NixOS/nixpkgs/issues/130963 + NIX_LDFLAGS = optionalString stdenv.isDarwin "-lc++abi"; + + enableParallelBuilding = true; + + cmakeFlags = [ + "-DTDESKTOP_API_TEST=ON" + "-DDESKTOP_APP_QT6=OFF" + ]; + + installPhase = optionalString stdenv.isDarwin '' + mkdir -p $out/Applications + cp -r Kotatogram.app $out/Applications + ln -s $out/Applications/Kotatogram.app/Contents/MacOS $out/bin + ''; + + preFixup = '' + binName=${if stdenv.isLinux then "kotatogram-desktop" else "Kotatogram"} + remove-references-to -t ${stdenv.cc.cc} $out/bin/$binName + remove-references-to -t ${microsoft_gsl} $out/bin/$binName + remove-references-to -t ${tg_owt.dev} $out/bin/$binName + ''; - postFixup = '' + postFixup = optionalString (stdenv.isLinux && withWebKit) '' # We also use gappsWrapperArgs from wrapGAppsHook. wrapProgram $out/bin/kotatogram-desktop \ "''${gappsWrapperArgs[@]}" \ @@ -66,9 +244,9 @@ in mkDerivation rec { It contains some useful (or purely cosmetic) features, but they could be unstable. A detailed list is available here: https://kotatogram.github.io/changes ''; license = licenses.gpl3; - platforms = platforms.linux; + platforms = platforms.all; homepage = "https://kotatogram.github.io"; - changelog = "https://github.com/kotatogram/kotatogram-desktop/releases/tag/k{ver}"; + changelog = "https://github.com/kotatogram/kotatogram-desktop/releases/tag/k{version}"; maintainers = with maintainers; [ ilya-fedin ]; }; } diff --git a/pkgs/applications/networking/instant-messengers/telegram/kotatogram-desktop/kotato-10.12-sdk.patch b/pkgs/applications/networking/instant-messengers/telegram/kotatogram-desktop/kotato-10.12-sdk.patch new file mode 100644 index 00000000000..d603c967cfd --- /dev/null +++ b/pkgs/applications/networking/instant-messengers/telegram/kotatogram-desktop/kotato-10.12-sdk.patch @@ -0,0 +1,415 @@ +diff --git a/Telegram/SourceFiles/platform/mac/file_bookmark_mac.mm b/Telegram/SourceFiles/platform/mac/file_bookmark_mac.mm +index 337055443..09604b117 100644 +--- a/Telegram/SourceFiles/platform/mac/file_bookmark_mac.mm ++++ b/Telegram/SourceFiles/platform/mac/file_bookmark_mac.mm +@@ -12,6 +12,7 @@ https://github.com/telegramdesktop/tdesktop/blob/master/LEGAL + + #include <Cocoa/Cocoa.h> + #include <CoreFoundation/CFURL.h> ++#undef check + + namespace Platform { + namespace { +diff --git a/Telegram/SourceFiles/platform/mac/specific_mac.mm b/Telegram/SourceFiles/platform/mac/specific_mac.mm +index 3b4395ae3..7f8ee401f 100644 +--- a/Telegram/SourceFiles/platform/mac/specific_mac.mm ++++ b/Telegram/SourceFiles/platform/mac/specific_mac.mm +@@ -119,6 +119,7 @@ PermissionStatus GetPermissionStatus(PermissionType type) { + switch (type) { + case PermissionType::Microphone: + case PermissionType::Camera: ++#if 0 + const auto nativeType = (type == PermissionType::Microphone) + ? AVMediaTypeAudio + : AVMediaTypeVideo; +@@ -133,6 +134,7 @@ PermissionStatus GetPermissionStatus(PermissionType type) { + return PermissionStatus::Denied; + } + } ++#endif + break; + } + return PermissionStatus::Granted; +@@ -142,6 +144,7 @@ void RequestPermission(PermissionType type, Fn<void(PermissionStatus)> resultCal + switch (type) { + case PermissionType::Microphone: + case PermissionType::Camera: ++#if 0 + const auto nativeType = (type == PermissionType::Microphone) + ? AVMediaTypeAudio + : AVMediaTypeVideo; +@@ -152,6 +155,7 @@ void RequestPermission(PermissionType type, Fn<void(PermissionStatus)> resultCal + }); + }]; + } ++#endif + break; + } + resultCallback(PermissionStatus::Granted); +diff --git a/Telegram/SourceFiles/platform/mac/touchbar/items/mac_formatter_item.h b/Telegram/SourceFiles/platform/mac/touchbar/items/mac_formatter_item.h +index a537929c8..82ef2b837 100644 +--- a/Telegram/SourceFiles/platform/mac/touchbar/items/mac_formatter_item.h ++++ b/Telegram/SourceFiles/platform/mac/touchbar/items/mac_formatter_item.h +@@ -9,8 +9,8 @@ https://github.com/telegramdesktop/tdesktop/blob/master/LEGAL + + #import <AppKit/NSPopoverTouchBarItem.h> + #import <AppKit/NSTouchBar.h> ++#undef check + +-API_AVAILABLE(macos(10.12.2)) + @interface TextFormatPopover : NSPopoverTouchBarItem + - (id)init:(NSTouchBarItemIdentifier)identifier; + @end +diff --git a/Telegram/SourceFiles/platform/mac/touchbar/items/mac_pinned_chats_item.h b/Telegram/SourceFiles/platform/mac/touchbar/items/mac_pinned_chats_item.h +index c6a4b886f..d2e0936c0 100644 +--- a/Telegram/SourceFiles/platform/mac/touchbar/items/mac_pinned_chats_item.h ++++ b/Telegram/SourceFiles/platform/mac/touchbar/items/mac_pinned_chats_item.h +@@ -8,12 +8,12 @@ https://github.com/telegramdesktop/tdesktop/blob/master/LEGAL + #pragma once + + #include <AppKit/NSImageView.h> ++#undef check + + namespace Main { + class Session; + } // namespace Main + +-API_AVAILABLE(macos(10.12.2)) + @interface PinnedDialogsPanel : NSImageView + - (id)init:(not_null<Main::Session*>)session + destroyEvent:(rpl::producer<>)touchBarSwitches; +diff --git a/Telegram/SourceFiles/platform/mac/touchbar/items/mac_scrubber_item.h b/Telegram/SourceFiles/platform/mac/touchbar/items/mac_scrubber_item.h +index 27b04467c..b1a7dfbd9 100644 +--- a/Telegram/SourceFiles/platform/mac/touchbar/items/mac_scrubber_item.h ++++ b/Telegram/SourceFiles/platform/mac/touchbar/items/mac_scrubber_item.h +@@ -9,12 +9,12 @@ https://github.com/telegramdesktop/tdesktop/blob/master/LEGAL + + #import <AppKit/NSPopoverTouchBarItem.h> + #import <AppKit/NSTouchBar.h> ++#undef check + + namespace Window { + class Controller; + } // namespace Window + +-API_AVAILABLE(macos(10.12.2)) + @interface StickerEmojiPopover : NSPopoverTouchBarItem<NSTouchBarDelegate> + - (id)init:(not_null<Window::Controller*>)controller + identifier:(NSTouchBarItemIdentifier)identifier; +diff --git a/Telegram/SourceFiles/platform/mac/touchbar/mac_touchbar_audio.h b/Telegram/SourceFiles/platform/mac/touchbar/mac_touchbar_audio.h +index ec4596c67..972461aef 100644 +--- a/Telegram/SourceFiles/platform/mac/touchbar/mac_touchbar_audio.h ++++ b/Telegram/SourceFiles/platform/mac/touchbar/mac_touchbar_audio.h +@@ -8,8 +8,8 @@ https://github.com/telegramdesktop/tdesktop/blob/master/LEGAL + #pragma once + + #import <AppKit/NSTouchBar.h> ++#undef check + +-API_AVAILABLE(macos(10.12.2)) + @interface TouchBarAudioPlayer : NSTouchBar<NSTouchBarDelegate> + - (rpl::producer<>)closeRequests; + @end +diff --git a/Telegram/SourceFiles/platform/mac/touchbar/mac_touchbar_common.h b/Telegram/SourceFiles/platform/mac/touchbar/mac_touchbar_common.h +index 52b54de12..ac3857f9b 100644 +--- a/Telegram/SourceFiles/platform/mac/touchbar/mac_touchbar_common.h ++++ b/Telegram/SourceFiles/platform/mac/touchbar/mac_touchbar_common.h +@@ -9,6 +9,7 @@ https://github.com/telegramdesktop/tdesktop/blob/master/LEGAL + + #import <AppKit/NSImage.h> + #import <Foundation/Foundation.h> ++#undef check + + namespace TouchBar { + +diff --git a/Telegram/SourceFiles/platform/mac/touchbar/mac_touchbar_controls.h b/Telegram/SourceFiles/platform/mac/touchbar/mac_touchbar_controls.h +index 1cc8c832f..c2178c975 100644 +--- a/Telegram/SourceFiles/platform/mac/touchbar/mac_touchbar_controls.h ++++ b/Telegram/SourceFiles/platform/mac/touchbar/mac_touchbar_controls.h +@@ -20,19 +20,19 @@ struct TrackState; + + namespace TouchBar { + +-[[nodiscard]] API_AVAILABLE(macos(10.12.2)) ++[[nodiscard]] + NSButton *CreateTouchBarButton( + NSImage *image, + rpl::lifetime &lifetime, + Fn<void()> callback); + +-[[nodiscard]] API_AVAILABLE(macos(10.12.2)) ++[[nodiscard]] + NSButton *CreateTouchBarButton( + const style::icon &icon, + rpl::lifetime &lifetime, + Fn<void()> callback); + +-[[nodiscard]] API_AVAILABLE(macos(10.12.2)) ++[[nodiscard]] + NSButton *CreateTouchBarButtonWithTwoStates( + NSImage *icon1, + NSImage *icon2, +@@ -41,7 +41,7 @@ NSButton *CreateTouchBarButtonWithTwoStates( + bool firstState, + rpl::producer<bool> stateChanged = rpl::never<bool>()); + +-[[nodiscard]] API_AVAILABLE(macos(10.12.2)) ++[[nodiscard]] + NSButton *CreateTouchBarButtonWithTwoStates( + const style::icon &icon1, + const style::icon &icon2, +@@ -50,14 +50,14 @@ NSButton *CreateTouchBarButtonWithTwoStates( + bool firstState, + rpl::producer<bool> stateChanged = rpl::never<bool>()); + +-[[nodiscard]] API_AVAILABLE(macos(10.12.2)) ++[[nodiscard]] + NSSliderTouchBarItem *CreateTouchBarSlider( + NSString *itemId, + rpl::lifetime &lifetime, + Fn<void(bool, double, double)> callback, + rpl::producer<Media::Player::TrackState> stateChanged); + +-[[nodiscard]] API_AVAILABLE(macos(10.12.2)) ++[[nodiscard]] + NSCustomTouchBarItem *CreateTouchBarTrackPosition( + NSString *itemId, + rpl::producer<Media::Player::TrackState> stateChanged); +diff --git a/Telegram/SourceFiles/platform/mac/touchbar/mac_touchbar_main.h b/Telegram/SourceFiles/platform/mac/touchbar/mac_touchbar_main.h +index f03546eaf..bc8c63678 100644 +--- a/Telegram/SourceFiles/platform/mac/touchbar/mac_touchbar_main.h ++++ b/Telegram/SourceFiles/platform/mac/touchbar/mac_touchbar_main.h +@@ -8,6 +8,7 @@ https://github.com/telegramdesktop/tdesktop/blob/master/LEGAL + #pragma once + + #import <AppKit/NSTouchBar.h> ++#undef check + + namespace Window { + class Controller; +@@ -21,7 +22,6 @@ const auto kPopoverPickerItemIdentifier = @"pickerButtons"; + + } // namespace TouchBar::Main + +-API_AVAILABLE(macos(10.12.2)) + @interface TouchBarMain : NSTouchBar + - (id)init:(not_null<Window::Controller*>)controller + touchBarSwitches:(rpl::producer<>)touchBarSwitches; +diff --git a/Telegram/SourceFiles/platform/mac/touchbar/mac_touchbar_manager.h b/Telegram/SourceFiles/platform/mac/touchbar/mac_touchbar_manager.h +index 464f87c9c..9a008c75e 100644 +--- a/Telegram/SourceFiles/platform/mac/touchbar/mac_touchbar_manager.h ++++ b/Telegram/SourceFiles/platform/mac/touchbar/mac_touchbar_manager.h +@@ -8,6 +8,7 @@ https://github.com/telegramdesktop/tdesktop/blob/master/LEGAL + #pragma once + + #import <AppKit/NSTouchBar.h> ++#undef check + + namespace Main { + class Domain; +@@ -17,7 +18,6 @@ namespace Window { + class Controller; + } // namespace Window + +-API_AVAILABLE(macos(10.12.2)) + @interface RootTouchBar : NSTouchBar<NSTouchBarDelegate> + - (id)init:(rpl::producer<bool>)canApplyMarkdown + controller:(not_null<Window::Controller*>)controller +Submodule Telegram/ThirdParty/tgcalls contains modified content +diff --git a/Telegram/ThirdParty/tgcalls/tgcalls/platform/darwin/TGRTCDefaultVideoDecoderFactory.mm b/Telegram/ThirdParty/tgcalls/tgcalls/platform/darwin/TGRTCDefaultVideoDecoderFactory.mm +index 8a4417b..2d9794e 100644 +--- a/Telegram/ThirdParty/tgcalls/tgcalls/platform/darwin/TGRTCDefaultVideoDecoderFactory.mm ++++ b/Telegram/ThirdParty/tgcalls/tgcalls/platform/darwin/TGRTCDefaultVideoDecoderFactory.mm +@@ -71,7 +71,7 @@ + if (@available(iOS 11.0, *)) { + [result addObject:h265Info]; + } +-#else // WEBRTC_IOS ++#elif 0 // WEBRTC_IOS + if (@available(macOS 10.13, *)) { + [result addObject:h265Info]; + } +@@ -101,7 +101,7 @@ + return [[TGRTCVideoDecoderH265 alloc] init]; + } + } +-#else // WEBRTC_IOS ++#elif 0 // WEBRTC_IOS + if (@available(macOS 10.13, *)) { + if ([info.name isEqualToString:kRTCVideoCodecH265Name]) { + return [[TGRTCVideoDecoderH265 alloc] init]; +diff --git a/Telegram/ThirdParty/tgcalls/tgcalls/platform/darwin/TGRTCDefaultVideoEncoderFactory.mm b/Telegram/ThirdParty/tgcalls/tgcalls/platform/darwin/TGRTCDefaultVideoEncoderFactory.mm +index 2901417..ac9ec2a 100644 +--- a/Telegram/ThirdParty/tgcalls/tgcalls/platform/darwin/TGRTCDefaultVideoEncoderFactory.mm ++++ b/Telegram/ThirdParty/tgcalls/tgcalls/platform/darwin/TGRTCDefaultVideoEncoderFactory.mm +@@ -76,7 +76,7 @@ + [result addObject:h265Info]; + } + } +-#else // WEBRTC_IOS ++#elif 0 // WEBRTC_IOS + if (@available(macOS 10.13, *)) { + if ([[AVAssetExportSession allExportPresets] containsObject:AVAssetExportPresetHEVCHighestQuality]) { + [result addObject:h265Info]; +@@ -112,7 +112,7 @@ + return [[TGRTCVideoEncoderH265 alloc] initWithCodecInfo:info]; + } + } +-#else // WEBRTC_IOS ++#elif 0 // WEBRTC_IOS + if (@available(macOS 10.13, *)) { + if ([info.name isEqualToString:kRTCVideoCodecH265Name]) { + return [[TGRTCVideoEncoderH265 alloc] initWithCodecInfo:info]; +diff --git a/Telegram/ThirdParty/tgcalls/tgcalls/platform/darwin/VideoCameraCapturerMac.mm b/Telegram/ThirdParty/tgcalls/tgcalls/platform/darwin/VideoCameraCapturerMac.mm +index de92427..9a5b20d 100644 +--- a/Telegram/ThirdParty/tgcalls/tgcalls/platform/darwin/VideoCameraCapturerMac.mm ++++ b/Telegram/ThirdParty/tgcalls/tgcalls/platform/darwin/VideoCameraCapturerMac.mm +@@ -507,8 +507,7 @@ static tgcalls::DarwinVideoTrackSource *getObjCVideoSource(const rtc::scoped_ref + - (void)captureOutput:(AVCaptureOutput *)captureOutput + didDropSampleBuffer:(CMSampleBufferRef)sampleBuffer + fromConnection:(AVCaptureConnection *)connection { +- NSString *droppedReason = +- (__bridge NSString *)CMGetAttachment(sampleBuffer, kCMSampleBufferAttachmentKey_DroppedFrameReason, nil); ++ NSString *droppedReason = nil; + RTCLogError(@"Dropped sample buffer. Reason: %@", droppedReason); + } + +diff --git a/Telegram/ThirdParty/tgcalls/tgcalls/platform/darwin/VideoMetalViewMac.mm b/Telegram/ThirdParty/tgcalls/tgcalls/platform/darwin/VideoMetalViewMac.mm +index bcabcf7..de7b6c7 100644 +--- a/Telegram/ThirdParty/tgcalls/tgcalls/platform/darwin/VideoMetalViewMac.mm ++++ b/Telegram/ThirdParty/tgcalls/tgcalls/platform/darwin/VideoMetalViewMac.mm +@@ -245,9 +245,11 @@ private: + layer.framebufferOnly = true; + layer.opaque = false; + // layer.cornerRadius = 4; ++#if 0 + if (@available(macOS 10.13, *)) { + layer.displaySyncEnabled = NO; + } ++#endif + // layer.presentsWithTransaction = YES; + layer.backgroundColor = [NSColor clearColor].CGColor; + layer.contentsGravity = kCAGravityResizeAspectFill; +@@ -334,9 +336,7 @@ private: + - (RTCVideoRotation)rtcFrameRotation { + if (_rotationOverride) { + RTCVideoRotation rotation; +- if (@available(macOS 10.13, *)) { +- [_rotationOverride getValue:&rotation size:sizeof(rotation)]; +- } else { ++ { + [_rotationOverride getValue:&rotation]; + } + return rotation; +Submodule Telegram/lib_base contains modified content +diff --git a/Telegram/lib_base/base/platform/mac/base_global_shortcuts_mac.mm b/Telegram/lib_base/base/platform/mac/base_global_shortcuts_mac.mm +index 5491702..32befc6 100644 +--- a/Telegram/lib_base/base/platform/mac/base_global_shortcuts_mac.mm ++++ b/Telegram/lib_base/base/platform/mac/base_global_shortcuts_mac.mm +@@ -128,6 +128,7 @@ bool Available() { + } + + bool Allowed() { ++#if 0 + if (@available(macOS 10.15, *)) { + // Input Monitoring is required on macOS 10.15 an later. + // Even if user grants access, restart is required. +@@ -141,6 +142,7 @@ bool Allowed() { + return AXIsProcessTrustedWithOptions( + (__bridge CFDictionaryRef)options); + } ++#endif + return true; + } + +diff --git a/Telegram/lib_base/base/platform/mac/base_info_mac.mm b/Telegram/lib_base/base/platform/mac/base_info_mac.mm +index 29e368f..ea1f65f 100644 +--- a/Telegram/lib_base/base/platform/mac/base_info_mac.mm ++++ b/Telegram/lib_base/base/platform/mac/base_info_mac.mm +@@ -203,16 +203,20 @@ void Finish() { + } + + void OpenInputMonitoringPrivacySettings() { ++#if 0 + if (@available(macOS 10.15, *)) { + IOHIDRequestAccess(kIOHIDRequestTypeListenEvent); + } ++#endif + [[NSWorkspace sharedWorkspace] openURL:PrivacySettingsUrl("Privacy_ListenEvent")]; + } + + void OpenDesktopCapturePrivacySettings() { ++#if 0 + if (@available(macOS 11.0, *)) { + CGRequestScreenCaptureAccess(); + } ++#endif + [[NSWorkspace sharedWorkspace] openURL:PrivacySettingsUrl("Privacy_ScreenCapture")]; + } + +diff --git a/Telegram/lib_base/base/platform/mac/base_system_media_controls_mac.mm b/Telegram/lib_base/base/platform/mac/base_system_media_controls_mac.mm +index c86ac77..b081162 100644 +--- a/Telegram/lib_base/base/platform/mac/base_system_media_controls_mac.mm ++++ b/Telegram/lib_base/base/platform/mac/base_system_media_controls_mac.mm +@@ -271,6 +271,7 @@ void SystemMediaControls::setThumbnail(const QImage &thumbnail) { + if (thumbnail.isNull()) { + return; + } ++#if 0 + if (@available(macOS 10.13.2, *)) { + const auto copy = thumbnail; + [_private->info +@@ -284,6 +285,7 @@ void SystemMediaControls::setThumbnail(const QImage &thumbnail) { + forKey:MPMediaItemPropertyArtwork]; + updateDisplay(); + } ++#endif + } + + void SystemMediaControls::setDuration(int duration) { +@@ -302,10 +304,12 @@ void SystemMediaControls::setVolume(float64 volume) { + } + + void SystemMediaControls::clearThumbnail() { ++#if 0 + if (@available(macOS 10.13.2, *)) { + [_private->info removeObjectForKey:MPMediaItemPropertyArtwork]; + updateDisplay(); + } ++#endif + } + + void SystemMediaControls::clearMetadata() { +@@ -367,9 +371,11 @@ bool SystemMediaControls::volumeSupported() const { + } + + bool SystemMediaControls::Supported() { ++#if 0 + if (@available(macOS 10.12.2, *)) { + return true; + } ++#endif + return false; + } + +Submodule Telegram/lib_webrtc contains modified content +diff --git a/Telegram/lib_webrtc/webrtc/mac/webrtc_media_devices_mac.mm b/Telegram/lib_webrtc/webrtc/mac/webrtc_media_devices_mac.mm +index 21e93f7..10a3890 100644 +--- a/Telegram/lib_webrtc/webrtc/mac/webrtc_media_devices_mac.mm ++++ b/Telegram/lib_webrtc/webrtc/mac/webrtc_media_devices_mac.mm +@@ -397,6 +397,7 @@ void MacMediaDevices::videoInputRefreshed() { + } + + bool MacDesktopCaptureAllowed() { ++#if 0 + if (@available(macOS 11.0, *)) { + // Screen Recording is required on macOS 10.15 an later. + // Even if user grants access, restart is required. +@@ -421,6 +422,7 @@ bool MacDesktopCaptureAllowed() { + CFRelease(stream); + return true; + } ++#endif + return true; + } + diff --git a/pkgs/applications/networking/instant-messengers/telegram/kotatogram-desktop/shortcuts-binary-path.patch b/pkgs/applications/networking/instant-messengers/telegram/kotatogram-desktop/shortcuts-binary-path.patch new file mode 100644 index 00000000000..f173a64f141 --- /dev/null +++ b/pkgs/applications/networking/instant-messengers/telegram/kotatogram-desktop/shortcuts-binary-path.patch @@ -0,0 +1,38 @@ +diff --git a/Telegram/SourceFiles/core/application.cpp b/Telegram/SourceFiles/core/application.cpp +index 2a092c6ea..de46dd269 100644 +--- a/Telegram/SourceFiles/core/application.cpp ++++ b/Telegram/SourceFiles/core/application.cpp +@@ -1173,7 +1173,7 @@ void Application::startShortcuts() { + + void Application::RegisterUrlScheme() { + base::Platform::RegisterUrlScheme(base::Platform::UrlSchemeDescriptor{ +- .executable = cExeDir() + cExeName(), ++ .executable = qsl("kotatogram-desktop"), + .arguments = qsl("-workdir \"%1\"").arg(cWorkingDir()), + .protocol = qsl("tg"), + .protocolName = qsl("Telegram Link"), +diff --git a/Telegram/SourceFiles/platform/linux/specific_linux.cpp b/Telegram/SourceFiles/platform/linux/specific_linux.cpp +index 26168baa7..00d2525a0 100644 +--- a/Telegram/SourceFiles/platform/linux/specific_linux.cpp ++++ b/Telegram/SourceFiles/platform/linux/specific_linux.cpp +@@ -303,19 +303,11 @@ bool GenerateDesktopFile( + + QFile target(targetFile); + if (target.open(QIODevice::WriteOnly)) { +- fileText = fileText.replace( +- QRegularExpression( +- qsl("^TryExec=.*$"), +- QRegularExpression::MultilineOption), +- qsl("TryExec=%1").arg( +- QString(cExeDir() + cExeName()).replace('\\', "\\\\"))); +- + fileText = fileText.replace( + QRegularExpression( + qsl("^Exec=kotatogram-desktop(.*)$"), + QRegularExpression::MultilineOption), +- qsl("Exec=%1 -workdir %2\\1").arg( +- EscapeShellInLauncher(cExeDir() + cExeName()), ++ qsl("Exec=kotatogram-desktop -workdir %1\\1").arg( + EscapeShellInLauncher(cWorkingDir()))); + + fileText = fileText.replace( diff --git a/pkgs/applications/networking/instant-messengers/telegram/kotatogram-desktop/tg_owt-10.12-sdk.patch b/pkgs/applications/networking/instant-messengers/telegram/kotatogram-desktop/tg_owt-10.12-sdk.patch new file mode 100644 index 00000000000..a9adf5737a5 --- /dev/null +++ b/pkgs/applications/networking/instant-messengers/telegram/kotatogram-desktop/tg_owt-10.12-sdk.patch @@ -0,0 +1,55 @@ +diff --git a/src/rtc_base/system/gcd_helpers.m b/src/rtc_base/system/gcd_helpers.m +index fd9a361f..3a63be6d 100644 +--- a/src/rtc_base/system/gcd_helpers.m ++++ b/src/rtc_base/system/gcd_helpers.m +@@ -13,9 +13,6 @@ + dispatch_queue_t RTCDispatchQueueCreateWithTarget(const char *label, + dispatch_queue_attr_t attr, + dispatch_queue_t target) { +- if (@available(iOS 10, macOS 10.12, tvOS 10, watchOS 3, *)) { +- return dispatch_queue_create_with_target(label, attr, target); +- } + dispatch_queue_t queue = dispatch_queue_create(label, attr); + dispatch_set_target_queue(queue, target); + return queue; +diff --git a/src/sdk/objc/components/video_codec/nalu_rewriter.cc b/src/sdk/objc/components/video_codec/nalu_rewriter.cc +index 61c1e7d6..b19f3f91 100644 +--- a/src/sdk/objc/components/video_codec/nalu_rewriter.cc ++++ b/src/sdk/objc/components/video_codec/nalu_rewriter.cc +@@ -245,10 +245,7 @@ bool H265CMSampleBufferToAnnexBBuffer( + int nalu_header_size = 0; + size_t param_set_count = 0; + OSStatus status = noErr; +- if (__builtin_available(macOS 10.13, *)) { +- status = CMVideoFormatDescriptionGetHEVCParameterSetAtIndex( +- description, 0, nullptr, nullptr, ¶m_set_count, &nalu_header_size); +- } else { ++ { + RTC_LOG(LS_ERROR) << "Not supported."; + return false; + } +@@ -271,10 +268,7 @@ bool H265CMSampleBufferToAnnexBBuffer( + size_t param_set_size = 0; + const uint8_t* param_set = nullptr; + for (size_t i = 0; i < param_set_count; ++i) { +- if (__builtin_available(macOS 10.13, *)) { +- status = CMVideoFormatDescriptionGetHEVCParameterSetAtIndex( +- description, i, ¶m_set, ¶m_set_size, nullptr, nullptr); +- } else { ++ { + RTC_LOG(LS_ERROR) << "Not supported."; + return false; + } +@@ -514,11 +508,7 @@ CMVideoFormatDescriptionRef CreateH265VideoFormatDescription( + // Parse the SPS and PPS into a CMVideoFormatDescription. + CMVideoFormatDescriptionRef description = nullptr; + OSStatus status = noErr; +- if (__builtin_available(macOS 10.13, *)) { +- status = CMVideoFormatDescriptionCreateFromHEVCParameterSets( +- kCFAllocatorDefault, 3, param_set_ptrs, param_set_sizes, 4, nullptr, +- &description); +- } else { ++ { + RTC_LOG(LS_ERROR) << "Not supported."; + return nullptr; + } diff --git a/pkgs/applications/networking/instant-messengers/telegram/kotatogram-desktop/tg_owt.nix b/pkgs/applications/networking/instant-messengers/telegram/kotatogram-desktop/tg_owt.nix index aff74a174b9..fe62270b8e8 100644 --- a/pkgs/applications/networking/instant-messengers/telegram/kotatogram-desktop/tg_owt.nix +++ b/pkgs/applications/networking/instant-messengers/telegram/kotatogram-desktop/tg_owt.nix @@ -1,35 +1,123 @@ -{ lib, stdenv, fetchFromGitHub, pkg-config, cmake, ninja, yasm -, libjpeg, openssl, libopus, ffmpeg_4, alsa-lib, libpulseaudio, protobuf -, xorg, libXtst +{ lib +, stdenv +, fetchFromGitHub +, pkg-config +, cmake +, ninja +, yasm +, libjpeg +, openssl +, libopus +, ffmpeg_4 +, protobuf +, openh264 +, usrsctp +, libvpx +, libX11 +, libXtst +, libXcomposite +, libXdamage +, libXext +, libXrender +, libXrandr +, libXi +, glib +, abseil-cpp +, pipewire +, mesa +, libglvnd +, libepoxy +, Cocoa +, AppKit +, IOKit +, IOSurface +, Foundation +, AVFoundation +, CoreMedia +, VideoToolbox +, CoreGraphics +, CoreVideo +, OpenGL +, Metal +, MetalKit +, CoreFoundation +, ApplicationServices }: -let - rev = "2d804d2c9c5d05324c8ab22f2e6ff8306521b3c3"; - sha256 = "0kz0i381iwsgcc3yzsq7njx3gkqja4bb9fsgc24vhg0md540qhyn"; - -in stdenv.mkDerivation { +stdenv.mkDerivation { pname = "tg_owt"; - version = "git-${rev}"; + version = "unstable-2022-02-26"; src = fetchFromGitHub { owner = "desktop-app"; repo = "tg_owt"; - inherit rev sha256; + rev = "a264028ec71d9096e0aa629113c49c25db89d260"; + sha256 = "sha256-JR+M+4w0QsQLfIunZ/7W+5Knn+gX+RR3DBrpOz7q44I="; fetchSubmodules = true; }; + patches = [ + # let it build with nixpkgs 10.12 sdk + ./tg_owt-10.12-sdk.patch + ]; + outputs = [ "out" "dev" ]; nativeBuildInputs = [ pkg-config cmake ninja yasm ]; buildInputs = [ - libjpeg openssl libopus ffmpeg_4 alsa-lib libpulseaudio protobuf - xorg.libX11 libXtst + libjpeg + openssl + libopus + ffmpeg_4 + protobuf + openh264 + usrsctp + libvpx + abseil-cpp + ] ++ lib.optionals stdenv.isLinux [ + libX11 + libXtst + libXcomposite + libXdamage + libXext + libXrender + libXrandr + libXi + glib + pipewire + mesa + libepoxy + libglvnd + ] ++ lib.optionals stdenv.isDarwin [ + Cocoa + AppKit + IOKit + IOSurface + Foundation + AVFoundation + CoreMedia + VideoToolbox + CoreGraphics + CoreVideo + OpenGL + Metal + MetalKit + CoreFoundation + ApplicationServices ]; - cmakeFlags = [ - # Building as a shared library isn't officially supported and currently broken: - "-DBUILD_SHARED_LIBS=OFF" + # https://github.com/NixOS/nixpkgs/issues/130963 + NIX_LDFLAGS = lib.optionalString stdenv.isDarwin "-lc++abi"; + + enableParallelBuilding = true; + + propagatedBuildInputs = [ + # Required for linking downstream binaries. + abseil-cpp + openh264 + usrsctp + libvpx ]; meta.license = lib.licenses.bsd3; diff --git a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix index 265e72c3867..c23e416d2c6 100644 --- a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix +++ b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix @@ -70,7 +70,7 @@ let in env.mkDerivation rec { pname = "telegram-desktop"; - version = "3.5.2"; + version = "3.6.0"; # Note: Update via pkgs/applications/networking/instant-messengers/telegram/tdesktop/update.py # Telegram-Desktop with submodules @@ -79,7 +79,7 @@ env.mkDerivation rec { repo = "tdesktop"; rev = "v${version}"; fetchSubmodules = true; - sha256 = "05324xvb00yz2jfigyy7izk8wnq8phm3sidw62kf7xqyh63qnrzh"; + sha256 = "0zcjm08nfdlxrsv0fi6dqg3lk52bcvsxnsf6jm5fv6gf5v9ia3hq"; }; postPatch = '' diff --git a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/tg_owt.nix b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/tg_owt.nix index a3c61a6f337..200e0e887e3 100644 --- a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/tg_owt.nix +++ b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/tg_owt.nix @@ -9,13 +9,13 @@ stdenv.mkDerivation { pname = "tg_owt"; - version = "unstable-2022-02-09"; + version = "unstable-2022-02-25"; src = fetchFromGitHub { owner = "desktop-app"; repo = "tg_owt"; - rev = "4cba1acdd718b700bb33945c0258283689d4eac7"; - sha256 = "0j201x9k38mvcyhf1wlyghyvdpv1l75xwgj9rl2l7r55afrpw4ca"; + rev = "a264028ec71d9096e0aa629113c49c25db89d260"; + sha256 = "10p3x8z3ps8s1ivi9y8px2gsg4pvsvz6g9wbgh5w8hilikxqq7r5"; fetchSubmodules = true; }; diff --git a/pkgs/applications/networking/mailreaders/himalaya/default.nix b/pkgs/applications/networking/mailreaders/himalaya/default.nix index 1c2d4110086..27779c96983 100644 --- a/pkgs/applications/networking/mailreaders/himalaya/default.nix +++ b/pkgs/applications/networking/mailreaders/himalaya/default.nix @@ -12,16 +12,16 @@ rustPlatform.buildRustPackage rec { pname = "himalaya"; - version = "0.5.8"; + version = "0.5.9"; src = fetchFromGitHub { owner = "soywod"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Ejaspj0YpkGmfO1omOhx8ZDg77J7NqC32mw5Cd3K1FM="; + sha256 = "sha256-g+ySsHnJ4FpmJLEjlutuiJmMkKI3Jb+HkWi1WBIo1aw="; }; - cargoSha256 = "sha256-xce2iHrqTxIirrut4dN7526pjE4T+ruaDS44jr+KeGs="; + cargoSha256 = "sha256-NkkONl57zSilElVAOXUBxWnims4+EIVkkTdExbeBAaQ="; nativeBuildInputs = lib.optionals enableCompletions [ installShellFiles ] ++ lib.optionals (!stdenv.hostPlatform.isDarwin) [ pkg-config ]; @@ -34,6 +34,8 @@ rustPlatform.buildRustPackage rec { openssl ]; + # flag added because without end-to-end testing is ran which requires + # additional tooling and servers to test cargoTestFlags = [ "--lib" ]; postInstall = lib.optionalString enableCompletions '' @@ -45,10 +47,10 @@ rustPlatform.buildRustPackage rec { ''; meta = with lib; { - description = "CLI email client written in Rust"; + description = "Command-line interface for email management"; homepage = "https://github.com/soywod/himalaya"; changelog = "https://github.com/soywod/himalaya/blob/v${version}/CHANGELOG.md"; license = licenses.bsdOriginal; - maintainers = with maintainers; [ yanganto ]; + maintainers = with maintainers; [ toastal yanganto ]; }; } diff --git a/pkgs/applications/networking/n8n/node-packages.nix b/pkgs/applications/networking/n8n/node-packages.nix index 38a1e2ab2aa..a86ac412c14 100644 --- a/pkgs/applications/networking/n8n/node-packages.nix +++ b/pkgs/applications/networking/n8n/node-packages.nix @@ -40,13 +40,13 @@ let sha512 = "QmmJmexXKtPyc3/rsZR/YTLDvMatzbzAypJmLzvlfxgz/SkgnqV/D4f6F2LsK6tBj1qhyp8BoXiOebiej0zz3A=="; }; }; - "@azure/core-lro-2.2.3" = { + "@azure/core-lro-2.2.4" = { name = "_at_azure_slash_core-lro"; packageName = "@azure/core-lro"; - version = "2.2.3"; + version = "2.2.4"; src = fetchurl { - url = "https://registry.npmjs.org/@azure/core-lro/-/core-lro-2.2.3.tgz"; - sha512 = "UMdlR9NsqDCLTba3EUbRjfMF4gDmWvld196JmUjbz9WWhJ2XT00OR5MXeWiR+vmGT+ETiO4hHFCi2/eGO5YVtg=="; + url = "https://registry.npmjs.org/@azure/core-lro/-/core-lro-2.2.4.tgz"; + sha512 = "e1I2v2CZM0mQo8+RSix0x091Av493e4bnT22ds2fcQGslTHzM2oTbswkB65nP4iEpCxBrFxOSDPKExmTmjCVtQ=="; }; }; "@azure/core-paging-1.2.1" = { @@ -103,22 +103,22 @@ let sha512 = "UA/8dgLy3+ZiwJjAZHxL4MUB14fFQPkaAOZ94jsTW/Z6WmoOeny2+cLk0+dyIX/iH6qSrEWKwbStEeB970B9pA=="; }; }; - "@azure/storage-blob-12.8.0" = { + "@azure/storage-blob-12.9.0" = { name = "_at_azure_slash_storage-blob"; packageName = "@azure/storage-blob"; - version = "12.8.0"; + version = "12.9.0"; src = fetchurl { - url = "https://registry.npmjs.org/@azure/storage-blob/-/storage-blob-12.8.0.tgz"; - sha512 = "c8+Wz19xauW0bGkTCoqZH4dYfbtBniPiGiRQOn1ca6G5jsjr4azwaTk9gwjVY8r3vY2Taf95eivLzipfIfiS4A=="; + url = "https://registry.npmjs.org/@azure/storage-blob/-/storage-blob-12.9.0.tgz"; + sha512 = "ank38FdCLfJ+EoeMzCz3hkYJuZAd63ARvDKkxZYRDb+beBYf+/+gx8jNTqkq/hfyUl4dJQ/a7tECU0Y0F98CHg=="; }; }; - "@babel/runtime-7.17.2" = { + "@babel/runtime-7.17.7" = { name = "_at_babel_slash_runtime"; packageName = "@babel/runtime"; - version = "7.17.2"; + version = "7.17.7"; src = fetchurl { - url = "https://registry.npmjs.org/@babel/runtime/-/runtime-7.17.2.tgz"; - sha512 = "hzeyJyMA1YGdJTuWU0e/j4wKXrU4OMFvY2MSlaI9B7VQb0r5cxTE3EAIS2Q7Tn2RIcDkRvTA/v2JsAEhxe99uw=="; + url = "https://registry.npmjs.org/@babel/runtime/-/runtime-7.17.7.tgz"; + sha512 = "L6rvG9GDxaLgFjg41K+5Yv9OMrU98sWe+Ykmc6FDJW/+vYZMhdOMKkISgzptMaERHvS2Y2lw9MDRm2gHhlQQoA=="; }; }; "@colors/colors-1.5.0" = { @@ -139,13 +139,13 @@ let sha512 = "hrlQOIi7hAfzsMqlGSFyVucrx38O+j6wiGOf//H2ecvIEqYN4ADBSS2iLMh5UFyDunCNniUIPk/q3riFv45xRA=="; }; }; - "@fontsource/open-sans-4.5.5" = { + "@fontsource/open-sans-4.5.6" = { name = "_at_fontsource_slash_open-sans"; packageName = "@fontsource/open-sans"; - version = "4.5.5"; + version = "4.5.6"; src = fetchurl { - url = "https://registry.npmjs.org/@fontsource/open-sans/-/open-sans-4.5.5.tgz"; - sha512 = "h1oUPSQpoMnDrnzIZTVS9PPBFhWXS87v6/cd9FY2Xc+GKbOVcjPZxcvUDU1TnCie2QSoYY9aifERRV/d8JHtWQ=="; + url = "https://registry.npmjs.org/@fontsource/open-sans/-/open-sans-4.5.6.tgz"; + sha512 = "bQuNS0H1VL1VLC6FwmReHlpJaICVe/seODU3Q9cpTQbJ5OtRD4TwWMrAjfTxqcFNollA6O0AlE4BnRSWMQLfvw=="; }; }; "@icetee/ftp-0.3.15" = { @@ -445,13 +445,13 @@ let sha512 = "zm6xBQpFDIDM6o9r6HSgDeIcLy82TKWctCXEPbJJcXb5AKmi5BNNdLXneixK4lplX3PqIVcwLBCGE/kAGnlD4A=="; }; }; - "@types/lodash-4.14.179" = { + "@types/lodash-4.14.180" = { name = "_at_types_slash_lodash"; packageName = "@types/lodash"; - version = "4.14.179"; + version = "4.14.180"; src = fetchurl { - url = "https://registry.npmjs.org/@types/lodash/-/lodash-4.14.179.tgz"; - sha512 = "uwc1x90yCKqGcIOAT6DwOSuxnrAbpkdPsUOZtwrXb4D/6wZs+6qG7QnIawDuZWg0sWpxl+ltIKCaLoMlna678w=="; + url = "https://registry.npmjs.org/@types/lodash/-/lodash-4.14.180.tgz"; + sha512 = "XOKXa1KIxtNXgASAnwj7cnttJxS4fksBRywK/9LzRV5YxrF80BXZIGeQSuoESQ/VkUj30Ae0+YcuHc15wJCB2g=="; }; }; "@types/lossless-json-1.0.1" = { @@ -472,13 +472,13 @@ let sha512 = "YATxVxgRqNH6nHEIsvg6k2Boc1JHI9ZbH5iWFFv/MTkchz3b1ieGDa5T0a9RznNdI0KhVbdbWSN+KWWrQZRxTw=="; }; }; - "@types/node-12.20.46" = { + "@types/node-12.20.47" = { name = "_at_types_slash_node"; packageName = "@types/node"; - version = "12.20.46"; + version = "12.20.47"; src = fetchurl { - url = "https://registry.npmjs.org/@types/node/-/node-12.20.46.tgz"; - sha512 = "cPjLXj8d6anFPzFvOPxS3fvly3Shm5nTfl6g8X5smexixbuGUf7hfr21J5tX9JW+UPStp/5P5R8qrKL5IyVJ+A=="; + url = "https://registry.npmjs.org/@types/node/-/node-12.20.47.tgz"; + sha512 = "BzcaRsnFuznzOItW1WpQrDHM7plAa7GIDMZ6b5pnMbkqEtM/6WCOhvZar39oeMQP79gwvFUWjjptE7/KGcNqFg=="; }; }; "@types/node-17.0.21" = { @@ -976,13 +976,13 @@ let sha512 = "uUbetCWczQHbsKyX1C99XpQHBM8SWfovvaZhPIj23/1uV7SQf0WeRZbiLpw0JZm+LHTChfNgrLfDJOVoU2kU+A=="; }; }; - "aws-sdk-2.1087.0" = { + "aws-sdk-2.1093.0" = { name = "aws-sdk"; packageName = "aws-sdk"; - version = "2.1087.0"; + version = "2.1093.0"; src = fetchurl { - url = "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.1087.0.tgz"; - sha512 = "m5EERT29Fwh2cv3SaSdygeAjJBXnjSaXRRERy70bf6PQ7KgmASJouBxY11g5G7LTEPK/yfB0TGshujKh3hEtPA=="; + url = "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.1093.0.tgz"; + sha512 = "YD6VNemoKkzDMHsUiGP/MwpM0T20ukp3KTSxPY34Xw3Ww0zP19C54CfjaXhn//R27f2c57BtVez+he2RZ5GwyQ=="; }; }; "aws-sign2-0.7.0" = { @@ -1471,6 +1471,15 @@ let sha512 = "jJ0bqzaylmJtVnNgzTeSOs8DPavpbYgEr/b0YL8/2GO3xJEhInFmhKMUnEJQjZumK7KXGFhUy89PrsJWlakBVg=="; }; }; + "clamp-1.0.1" = { + name = "clamp"; + packageName = "clamp"; + version = "1.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/clamp/-/clamp-1.0.1.tgz"; + sha1 = "66a0e64011816e37196828fdc8c8c147312c8634"; + }; + }; "class-validator-0.13.2" = { name = "class-validator"; packageName = "class-validator"; @@ -1777,6 +1786,15 @@ let sha512 = "Mn4AJiYkR3TAZH1Xm/RU7gFS/0kM5TBSAQDry8y40Aez0ASY+3boUhv+3QE5XbOXiXM2JjdhkKve3IsBvWCibQ=="; }; }; + "cookie-0.4.1" = { + name = "cookie"; + packageName = "cookie"; + version = "0.4.1"; + src = fetchurl { + url = "https://registry.npmjs.org/cookie/-/cookie-0.4.1.tgz"; + sha512 = "ZwrFkGJxUR3EIoXtO+yVE69Eb7KlixbaeAWfBQB9vVsNn/o+Yw69gBWSSDK825hQNdN+wF8zELf3dFNl/kxkUA=="; + }; + }; "cookie-0.4.2" = { name = "cookie"; packageName = "cookie"; @@ -1786,6 +1804,15 @@ let sha512 = "aSWTXFzaKWkvHO1Ny/s+ePFpvKsPnjc551iI41v3ny/ow6tBG5Vd+FuqGNhh1LxOmVzOlGUriIlOaokOvhaStA=="; }; }; + "cookie-parser-1.4.6" = { + name = "cookie-parser"; + packageName = "cookie-parser"; + version = "1.4.6"; + src = fetchurl { + url = "https://registry.npmjs.org/cookie-parser/-/cookie-parser-1.4.6.tgz"; + sha512 = "z3IzaNjdwUC2olLIB5/ITd0/setiaFMLYiZJle7xg5Fe9KWAceil7xszYfHHBtDFYLSgJduS2Ty0P1uJdPDJeA=="; + }; + }; "cookie-signature-1.0.6" = { name = "cookie-signature"; packageName = "cookie-signature"; @@ -3604,13 +3631,13 @@ let sha1 = "bb935d48582cba168c06834957a54a3e07124f11"; }; }; - "isbot-3.4.3" = { + "isbot-3.4.5" = { name = "isbot"; packageName = "isbot"; - version = "3.4.3"; + version = "3.4.5"; src = fetchurl { - url = "https://registry.npmjs.org/isbot/-/isbot-3.4.3.tgz"; - sha512 = "5hAgiY9ysMIJcVQlGHcXptwgZr1yYbIGNBE36a3sPo7cLZ9eLTLx0qOssekFKaTHiXTwd/ZZMTuOS7w4faOmpw=="; + url = "https://registry.npmjs.org/isbot/-/isbot-3.4.5.tgz"; + sha512 = "+KD6q1BBtw0iK9aGBGSfxJ31/ZgizKRjhm8ebgJUBMx0aeeQuIJ1I72beCoIrltIZGrSm4vmrxRxrG5n1aUTtw=="; }; }; "isexe-2.0.0" = { @@ -4045,6 +4072,15 @@ let sha1 = "d8757b1da807dde24816b0d6a84bea1a76230b23"; }; }; + "lodash.throttle-4.1.1" = { + name = "lodash.throttle"; + packageName = "lodash.throttle"; + version = "4.1.1"; + src = fetchurl { + url = "https://registry.npmjs.org/lodash.throttle/-/lodash.throttle-4.1.1.tgz"; + sha1 = "c23e91b710242ac70c37f1e1cda9274cc39bf2f4"; + }; + }; "lodash.uniqby-4.7.0" = { name = "lodash.uniqby"; packageName = "lodash.uniqby"; @@ -4135,6 +4171,15 @@ let sha512 = "IXAq50s4qwrOBrXJklY+KhgZF+5y98PDaNo0gi/v2KQBFLyWr+JyFvijZXkGKjQj/h9c0OwoE+JZbwUXce76hQ=="; }; }; + "luxon-2.3.1" = { + name = "luxon"; + packageName = "luxon"; + version = "2.3.1"; + src = fetchurl { + url = "https://registry.npmjs.org/luxon/-/luxon-2.3.1.tgz"; + sha512 = "I8vnjOmhXsMSlNMZlMkSOvgrxKJl0uOsEzdGgGNZuZPaS9KlefpE9KV95QFftlJSC+1UyCC9/I69R02cz/zcCA=="; + }; + }; "mailparser-3.4.0" = { name = "mailparser"; packageName = "mailparser"; @@ -4180,13 +4225,22 @@ let sha512 = "etgt+n4LlOkGSJbBTV9VROHA5R7ekIPS4vfh+bCAoJgRrJWdqJCBbpS3osRJ/HrT7R68MzMiY3L3sDJ/Fd8aBg=="; }; }; - "mappersmith-2.37.1" = { + "mappersmith-2.38.0" = { name = "mappersmith"; packageName = "mappersmith"; - version = "2.37.1"; + version = "2.38.0"; src = fetchurl { - url = "https://registry.npmjs.org/mappersmith/-/mappersmith-2.37.1.tgz"; - sha512 = "3QiXhRADHTK/it1riJMJm/sHmLlGdw3pfLgZJQu9MfT1CNeiO93keNY0BVLlRmpPBsMER/P7kj3mtcAK2V331Q=="; + url = "https://registry.npmjs.org/mappersmith/-/mappersmith-2.38.0.tgz"; + sha512 = "D2+ICkvNGnGCz01MADdQQilcHGffwLd1ell4b4uXS9QYvLfrX0r5nl5zb9V+2YDy3142u6VUl1b154pxJAxw3g=="; + }; + }; + "material-colors-1.2.6" = { + name = "material-colors"; + packageName = "material-colors"; + version = "1.2.6"; + src = fetchurl { + url = "https://registry.npmjs.org/material-colors/-/material-colors-1.2.6.tgz"; + sha512 = "6qE4B9deFBIa9YSpOc9O0Sgc43zTeVYbgDT5veRKSlB2+ZuHNoVVxA1L/ckMUayV9Ay9y7Z/SZCLcGteW9i7bg=="; }; }; "md5-2.3.0" = { @@ -4261,22 +4315,22 @@ let sha512 = "x0Vn8spI+wuJ1O6S7gnbaQg8Pxh4NNHb7KSINmEWKiPE4RKOplvijn+NkmYmmRgP68mc70j2EbeTFRsrswaQeg=="; }; }; - "mime-db-1.51.0" = { + "mime-db-1.52.0" = { name = "mime-db"; packageName = "mime-db"; - version = "1.51.0"; + version = "1.52.0"; src = fetchurl { - url = "https://registry.npmjs.org/mime-db/-/mime-db-1.51.0.tgz"; - sha512 = "5y8A56jg7XVQx2mbv1lu49NR4dokRnhZYTtL+KGfaa27uq4pSTXkwQkFJl4pkRMyNFz/EtYDSkiiEHx3F7UN6g=="; + url = "https://registry.npmjs.org/mime-db/-/mime-db-1.52.0.tgz"; + sha512 = "sPU4uV7dYlvtWJxwwxHD0PuihVNiE7TyAbQ5SWxDCB9mUYvOgroQOwYQQOKPJ8CIbE+1ETVlOoK1UC2nU3gYvg=="; }; }; - "mime-types-2.1.34" = { + "mime-types-2.1.35" = { name = "mime-types"; packageName = "mime-types"; - version = "2.1.34"; + version = "2.1.35"; src = fetchurl { - url = "https://registry.npmjs.org/mime-types/-/mime-types-2.1.34.tgz"; - sha512 = "6cP692WwGIs9XXdOO4++N+7qjqv0rqxxVvJ3VHPh/Sc9mVZcQP+ZGhkKiTvWMQRr2tbHkJP/Yn7Y0npb3ZBs4A=="; + url = "https://registry.npmjs.org/mime-types/-/mime-types-2.1.35.tgz"; + sha512 = "ZDY+bPm5zTTF+YpCrAU9nK0UgICYPT0QtT1NZWFv4s++TNkcgVaT0g6+4R2uI4MjQjzysHB1zxuWL50hzaeXiw=="; }; }; "mimic-fn-2.1.0" = { @@ -4486,49 +4540,49 @@ let sha512 = "z81GNO7nnYMEhrGh9LeymoE4+Yr0Wn5McHIZMK5cfQCl+NDX08sCZgUc9/6MHni9IWuFLm1Z3HTCXu2z9fN62Q=="; }; }; - "n8n-core-0.107.0" = { + "n8n-core-0.109.0" = { name = "n8n-core"; packageName = "n8n-core"; - version = "0.107.0"; + version = "0.109.0"; src = fetchurl { - url = "https://registry.npmjs.org/n8n-core/-/n8n-core-0.107.0.tgz"; - sha512 = "jwlEv67bPCn1Npp5SkZ11MViQgN96B2bUmSdsKPIBkJGkAPdd6BAUNAhF6qlAS53KhkbSqjuZkn71sDwbHv1cg=="; + url = "https://registry.npmjs.org/n8n-core/-/n8n-core-0.109.0.tgz"; + sha512 = "hzimsUZbWHfG9RofSX7czg0DgB7YAIcLi7JRFUVB90HVdasFf1HQFVM2AwFZC/lLVckktuadWSpq2MOKW+lE3Q=="; }; }; - "n8n-design-system-0.13.0" = { + "n8n-design-system-0.14.0" = { name = "n8n-design-system"; packageName = "n8n-design-system"; - version = "0.13.0"; + version = "0.14.0"; src = fetchurl { - url = "https://registry.npmjs.org/n8n-design-system/-/n8n-design-system-0.13.0.tgz"; - sha512 = "dnweYfFdU9RLdZhmllAlF35dFp0F8Cxw2YAVPMTYOJ2saTs992kvI+09k5iVHDdRxA92BKRXgRRfvY1p0goXcQ=="; + url = "https://registry.npmjs.org/n8n-design-system/-/n8n-design-system-0.14.0.tgz"; + sha512 = "E9Tvnjd9hktVPsqBcX579Fr4Nn/QEVAHQaYZlPGrqxXLVD76mF0WQWJpU6XTZEs/9pKfEftk/TmDihtENLVTxg=="; }; }; - "n8n-editor-ui-0.133.0" = { + "n8n-editor-ui-0.135.0" = { name = "n8n-editor-ui"; packageName = "n8n-editor-ui"; - version = "0.133.0"; + version = "0.135.0"; src = fetchurl { - url = "https://registry.npmjs.org/n8n-editor-ui/-/n8n-editor-ui-0.133.0.tgz"; - sha512 = "lKi2eyx5mn5vfo5sArvsnQ+1khdkX7I1Aqml5VFgzTUhHDLZB2Pvupu+czE55l9QSGs6oqaN9a9NRblWOHc0zQ=="; + url = "https://registry.npmjs.org/n8n-editor-ui/-/n8n-editor-ui-0.135.0.tgz"; + sha512 = "oM+Pnh4ZaUnDy5lj6u71EyXUPGNlbEIn3lpi4+xyO8tYtFyaN1kifS/q/a1sYrgZlwbWaksgUvTqufZ3Te6Yqw=="; }; }; - "n8n-nodes-base-0.164.0" = { + "n8n-nodes-base-0.166.0" = { name = "n8n-nodes-base"; packageName = "n8n-nodes-base"; - version = "0.164.0"; + version = "0.166.0"; src = fetchurl { - url = "https://registry.npmjs.org/n8n-nodes-base/-/n8n-nodes-base-0.164.0.tgz"; - sha512 = "5GSd0f1rQZfKt9e0S1zwn5K34TSd1lYkd3MEPKDHjvksxfNOumtZpf0rwEgb/7Uf6azw7ESqk4VXwxiVQu0sgw=="; + url = "https://registry.npmjs.org/n8n-nodes-base/-/n8n-nodes-base-0.166.0.tgz"; + sha512 = "Iet76bGJrS3rTal5KbuBsJvYzAw3o9xfcLHERpDJyXOxgvrPfZ62A7RpmLMLA3KJLfKevY+VLGLWW5odTSvtEg=="; }; }; - "n8n-workflow-0.89.0" = { + "n8n-workflow-0.91.0" = { name = "n8n-workflow"; packageName = "n8n-workflow"; - version = "0.89.0"; + version = "0.91.0"; src = fetchurl { - url = "https://registry.npmjs.org/n8n-workflow/-/n8n-workflow-0.89.0.tgz"; - sha512 = "hggmmjHsa3VjP5puRssH4Q8hoigqJ3W+KQeY54Qsa1rJoJEjZYy53NGOQ3QMmuPuTUvVMHe4Z/Hb6u4Bbh1wAg=="; + url = "https://registry.npmjs.org/n8n-workflow/-/n8n-workflow-0.91.0.tgz"; + sha512 = "a4yqSvcalQs2MEDkOeadQc9cwK/3f6t+EKr/e8rEN5D9djnmuvoRJC+V9v6KPuHy66q1pv6w7fpmnrLRO+2WrA=="; }; }; "named-placeholders-1.1.2" = { @@ -5089,6 +5143,42 @@ let sha512 = "uWlGT3YSnK9x3BQJaOdcZwrnV6hPpd8jFH1/ucpiLRPh/2zCVJKS19E4GvYHvaCcACn3foXZ0cLB9Wrx1KGe5g=="; }; }; + "passport-0.5.2" = { + name = "passport"; + packageName = "passport"; + version = "0.5.2"; + src = fetchurl { + url = "https://registry.npmjs.org/passport/-/passport-0.5.2.tgz"; + sha512 = "w9n/Ot5I7orGD4y+7V3EFJCQEznE5RxHamUxcqLT2QoJY0f2JdN8GyHonYFvN0Vz+L6lUJfVhrk2aZz2LbuREw=="; + }; + }; + "passport-cookie-1.0.9" = { + name = "passport-cookie"; + packageName = "passport-cookie"; + version = "1.0.9"; + src = fetchurl { + url = "https://registry.npmjs.org/passport-cookie/-/passport-cookie-1.0.9.tgz"; + sha512 = "8a6foX2bbGoJzup0RAiNcC2tTqzYS46RQEK3Z4u8p86wesPUjgDaji3C7+5j4TGyCq4ZoOV+3YLw1Hy6cV6kyw=="; + }; + }; + "passport-jwt-4.0.0" = { + name = "passport-jwt"; + packageName = "passport-jwt"; + version = "4.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/passport-jwt/-/passport-jwt-4.0.0.tgz"; + sha512 = "BwC0n2GP/1hMVjR4QpnvqA61TxenUMlmfNjYNgK0ZAs0HK4SOQkHcSv4L328blNTLtHq7DbmvyNJiH+bn6C5Mg=="; + }; + }; + "passport-strategy-1.0.0" = { + name = "passport-strategy"; + packageName = "passport-strategy"; + version = "1.0.0"; + src = fetchurl { + url = "https://registry.npmjs.org/passport-strategy/-/passport-strategy-1.0.0.tgz"; + sha1 = "b5539aa8fc225a3d1ad179476ddf236b440f52e4"; + }; + }; "path-case-3.0.4" = { name = "path-case"; packageName = "path-case"; @@ -5134,6 +5224,15 @@ let sha512 = "gDKb8aZMDeD/tZWs9P6+q0J9Mwkdl6xMV8TjnGP3qJVJ06bdMgkbBlLU8IdfOsIsFz2BW1rNVT3XuNEl8zPAvw=="; }; }; + "pause-0.0.1" = { + name = "pause"; + packageName = "pause"; + version = "0.0.1"; + src = fetchurl { + url = "https://registry.npmjs.org/pause/-/pause-0.0.1.tgz"; + sha1 = "1d408b3fdb76923b9543d96fb4c9dfd535d9cb5d"; + }; + }; "pdf-parse-1.1.1" = { name = "pdf-parse"; packageName = "pdf-parse"; @@ -5287,13 +5386,13 @@ let sha512 = "vrlOGvNVELko0+J8NpGC5lHWDGrk8LQJq9nwAMIVEVBfN1Lib3BLxAaLRGDTuUnvl45j5N9dT2H85PULz6IjjQ=="; }; }; - "popsicle-redirects-1.1.0" = { + "popsicle-redirects-1.1.1" = { name = "popsicle-redirects"; packageName = "popsicle-redirects"; - version = "1.1.0"; + version = "1.1.1"; src = fetchurl { - url = "https://registry.npmjs.org/popsicle-redirects/-/popsicle-redirects-1.1.0.tgz"; - sha512 = "XCpzVjVk7tty+IJnSdqWevmOr1n8HNDhL86v7mZ6T1JIIf2KGybxUk9mm7ZFOhWMkGB0e8XkacHip7BV8AQWQA=="; + url = "https://registry.npmjs.org/popsicle-redirects/-/popsicle-redirects-1.1.1.tgz"; + sha512 = "mC2HrKjdTAWDalOjGxlXw9j6Qxrz/Yd2ui6bPxpi2IQDYWpF4gUAMxbA8EpSWJhLi0PuWKDwTHHPrUPGutAoIA=="; }; }; "popsicle-transport-http-1.2.1" = { @@ -6682,6 +6781,15 @@ let sha512 = "a7wPxPdVlQL7lqvitHGGRsofhdwtkoSXPGATFuSOA2i1ZNQEPLrGnj68vOp2sOJTCFAQVXPeNMX/GctBaO9L2w=="; }; }; + "tinycolor2-1.4.2" = { + name = "tinycolor2"; + packageName = "tinycolor2"; + version = "1.4.2"; + src = fetchurl { + url = "https://registry.npmjs.org/tinycolor2/-/tinycolor2-1.4.2.tgz"; + sha512 = "vJhccZPs965sV/L2sU4oRQVAos0pQXwsvTLkWYdqJ+a8Q5kPFzJTuOFwy7UniPli44NKQGAglksjvOcpo95aZA=="; + }; + }; "tlds-1.224.0" = { name = "tlds"; packageName = "tlds"; @@ -7159,6 +7267,24 @@ let sha512 = "xwTm7NLh/uOjARRBs8/95H0e8fT3Ukw5D/JJWhxMbhKzNh1Nu981jQKvkep9iKYNxzlVrdzD0mlBGkDKZWprlw=="; }; }; + "vue-2.6.14" = { + name = "vue"; + packageName = "vue"; + version = "2.6.14"; + src = fetchurl { + url = "https://registry.npmjs.org/vue/-/vue-2.6.14.tgz"; + sha512 = "x2284lgYvjOMj3Za7kqzRcUSxBboHqtgRE2zlos1qWaOye5yUmHn42LB1250NJBLRwEcdrB0JRwyPTEPhfQjiQ=="; + }; + }; + "vue-color-2.8.1" = { + name = "vue-color"; + packageName = "vue-color"; + version = "2.8.1"; + src = fetchurl { + url = "https://registry.npmjs.org/vue-color/-/vue-color-2.8.1.tgz"; + sha512 = "BoLCEHisXi2QgwlhZBg9UepvzZZmi4176vbr+31Shen5WWZwSLVgdScEPcB+yrAtuHAz42309C0A4+WiL9lNBw=="; + }; + }; "vue-fragment-1.5.2" = { name = "vue-fragment"; packageName = "vue-fragment"; @@ -7177,6 +7303,15 @@ let sha512 = "SX35iJHL5PJ4Gfh0Mo/q0shyHiI2V6Zkh51c+k8E9O1RKv5BQyYrCxRzpvPrsIOJEnLaeiovet3dsUB0e/kDzw=="; }; }; + "vue2-boring-avatars-0.3.4" = { + name = "vue2-boring-avatars"; + packageName = "vue2-boring-avatars"; + version = "0.3.4"; + src = fetchurl { + url = "https://registry.npmjs.org/vue2-boring-avatars/-/vue2-boring-avatars-0.3.4.tgz"; + sha512 = "N3FYX9Z6rZdTeP3BOBz2LMxlWo9WRmPF6SOsYzz+tEuUH0QjX8UD7c1X95J8pZ7cFvbh9QflVujYQRqRiiwoAg=="; + }; + }; "webidl-conversions-3.0.1" = { name = "webidl-conversions"; packageName = "webidl-conversions"; @@ -7480,10 +7615,10 @@ in n8n = nodeEnv.buildNodePackage { name = "n8n"; packageName = "n8n"; - version = "0.166.0"; + version = "0.168.1"; src = fetchurl { - url = "https://registry.npmjs.org/n8n/-/n8n-0.166.0.tgz"; - sha512 = "t8tRpOyrEIxaIuLzfBajDPjAMygcCapiIqHDjU8YloJalI0MnbuoQ6DgA2RdRDZElN0yew0rQR8ZxZ2nMUk8Fg=="; + url = "https://registry.npmjs.org/n8n/-/n8n-0.168.1.tgz"; + sha512 = "bghyOcF+KZmRsmyC9p2ARb+RIlUBDwTKCMLd5eUFW1SKMBCWgQZwG8KCLCRApWjXjP1SYekeyDo1PSl5fa7Hxw=="; }; dependencies = [ (sources."@azure/abort-controller-1.0.5" // { @@ -7503,7 +7638,7 @@ in sources."tslib-2.3.1" ]; }) - (sources."@azure/core-lro-2.2.3" // { + (sources."@azure/core-lro-2.2.4" // { dependencies = [ sources."tslib-2.3.1" ]; @@ -7530,12 +7665,12 @@ in ]; }) sources."@azure/ms-rest-nodeauth-3.1.1" - (sources."@azure/storage-blob-12.8.0" // { + (sources."@azure/storage-blob-12.9.0" // { dependencies = [ sources."tslib-2.3.1" ]; }) - sources."@babel/runtime-7.17.2" + sources."@babel/runtime-7.17.7" sources."@colors/colors-1.5.0" (sources."@dabh/diagnostics-2.0.3" // { dependencies = [ @@ -7543,7 +7678,7 @@ in sources."kuler-2.0.0" ]; }) - sources."@fontsource/open-sans-4.5.5" + sources."@fontsource/open-sans-4.5.6" sources."@icetee/ftp-0.3.15" sources."@kafkajs/confluent-schema-registry-1.0.6" sources."@kwsites/file-exists-1.1.1" @@ -7592,7 +7727,7 @@ in sources."@types/ftp-0.3.33" sources."@types/json-diff-0.5.2" sources."@types/jsonwebtoken-8.5.8" - sources."@types/lodash-4.14.179" + sources."@types/lodash-4.14.180" sources."@types/lossless-json-1.0.1" sources."@types/mime-1.3.2" sources."@types/node-17.0.21" @@ -7664,7 +7799,7 @@ in ]; }) sources."avsc-5.7.3" - (sources."aws-sdk-2.1087.0" // { + (sources."aws-sdk-2.1093.0" // { dependencies = [ sources."buffer-4.9.2" sources."events-1.1.1" @@ -7774,6 +7909,7 @@ in sources."cheerio-select-1.5.0" sources."chokidar-3.5.2" sources."chownr-1.1.4" + sources."clamp-1.0.1" sources."class-validator-0.13.2" sources."clean-stack-3.0.1" sources."cli-color-0.1.7" @@ -7835,7 +7971,8 @@ in sources."content-disposition-0.5.4" sources."content-type-1.0.4" sources."convict-6.2.1" - sources."cookie-0.4.2" + sources."cookie-0.4.1" + sources."cookie-parser-1.4.6" sources."cookie-signature-1.0.6" sources."core-js-3.21.1" sources."core-util-is-1.0.2" @@ -7923,6 +8060,7 @@ in sources."expand-tilde-2.0.2" (sources."express-4.17.3" // { dependencies = [ + sources."cookie-0.4.2" sources."debug-2.6.9" sources."ms-2.0.0" ]; @@ -8078,7 +8216,7 @@ in sources."is-windows-1.0.2" sources."is-wsl-2.2.0" sources."isarray-0.0.1" - sources."isbot-3.4.3" + sources."isbot-3.4.5" sources."isexe-2.0.0" sources."iso-639-1-2.1.13" sources."isstream-0.1.2" @@ -8137,6 +8275,7 @@ in sources."lodash.merge-4.6.2" sources."lodash.once-4.1.1" sources."lodash.set-4.3.2" + sources."lodash.throttle-4.1.1" sources."lodash.uniqby-4.7.0" sources."lodash.unset-4.5.2" sources."logform-2.4.0" @@ -8154,6 +8293,7 @@ in sources."yallist-2.1.2" ]; }) + sources."luxon-2.3.1" (sources."mailparser-3.4.0" // { dependencies = [ sources."iconv-lite-0.6.3" @@ -8168,7 +8308,8 @@ in }) sources."make-error-1.3.6" sources."make-error-cause-2.3.0" - sources."mappersmith-2.37.1" + sources."mappersmith-2.38.0" + sources."material-colors-1.2.6" sources."md5-2.3.0" sources."media-typer-0.3.0" sources."merge-descriptors-1.0.1" @@ -8177,8 +8318,8 @@ in sources."micromatch-4.0.4" sources."millisecond-0.1.2" sources."mime-1.6.0" - sources."mime-db-1.51.0" - sources."mime-types-2.1.34" + sources."mime-db-1.52.0" + sources."mime-types-2.1.35" sources."mimic-fn-2.1.0" sources."minimalistic-assert-1.0.1" sources."minimatch-3.1.2" @@ -8224,19 +8365,19 @@ in ]; }) sources."mz-2.7.0" - (sources."n8n-core-0.107.0" // { + (sources."n8n-core-0.109.0" // { dependencies = [ sources."qs-6.10.3" ]; }) - sources."n8n-design-system-0.13.0" - sources."n8n-editor-ui-0.133.0" - (sources."n8n-nodes-base-0.164.0" // { + sources."n8n-design-system-0.14.0" + sources."n8n-editor-ui-0.135.0" + (sources."n8n-nodes-base-0.166.0" // { dependencies = [ sources."iconv-lite-0.6.3" ]; }) - sources."n8n-workflow-0.89.0" + sources."n8n-workflow-0.91.0" (sources."named-placeholders-1.1.2" // { dependencies = [ sources."lru-cache-4.1.5" @@ -8341,6 +8482,10 @@ in sources."tslib-2.3.1" ]; }) + sources."passport-0.5.2" + sources."passport-cookie-1.0.9" + sources."passport-jwt-4.0.0" + sources."passport-strategy-1.0.0" (sources."path-case-3.0.4" // { dependencies = [ sources."tslib-2.3.1" @@ -8350,6 +8495,7 @@ in sources."path-is-absolute-1.0.1" sources."path-to-regexp-0.1.7" sources."path-type-4.0.0" + sources."pause-0.0.1" (sources."pdf-parse-1.1.1" // { dependencies = [ sources."debug-3.2.7" @@ -8378,7 +8524,7 @@ in sources."popsicle-12.1.0" sources."popsicle-content-encoding-1.0.0" sources."popsicle-cookie-jar-1.0.0" - sources."popsicle-redirects-1.1.0" + sources."popsicle-redirects-1.1.1" sources."popsicle-transport-http-1.2.1" sources."popsicle-transport-xhr-2.0.0" sources."popsicle-user-agent-1.0.0" @@ -8564,7 +8710,7 @@ in sources."tdigest-0.1.1" (sources."tedious-6.7.1" // { dependencies = [ - sources."@types/node-12.20.46" + sources."@types/node-12.20.47" sources."bl-3.0.1" sources."depd-2.0.0" sources."iconv-lite-0.5.2" @@ -8588,6 +8734,7 @@ in sources."through2-filter-3.0.0" sources."throwback-4.1.0" sources."timeago.js-4.0.2" + sources."tinycolor2-1.4.2" sources."tlds-1.224.0" sources."tmp-0.0.33" (sources."tmp-promise-3.0.3" // { @@ -8663,8 +8810,11 @@ in sources."vary-1.1.2" sources."verror-1.10.0" sources."vm2-3.9.9" + sources."vue-2.6.14" + sources."vue-color-2.8.1" sources."vue-fragment-1.5.2" sources."vue-i18n-8.27.0" + sources."vue2-boring-avatars-0.3.4" sources."webidl-conversions-3.0.1" sources."whatwg-url-5.0.0" sources."which-1.3.1" diff --git a/pkgs/applications/networking/nextcloud-client/default.nix b/pkgs/applications/networking/nextcloud-client/default.nix index 3a63f98c44c..deac64c903e 100644 --- a/pkgs/applications/networking/nextcloud-client/default.nix +++ b/pkgs/applications/networking/nextcloud-client/default.nix @@ -22,13 +22,13 @@ mkDerivation rec { pname = "nextcloud-client"; - version = "3.4.3"; + version = "3.4.4"; src = fetchFromGitHub { owner = "nextcloud"; repo = "desktop"; rev = "v${version}"; - sha256 = "sha256-nryoueoqnbBAJaU11OUXKP5PNrYf4515ojBkdMFIEMA="; + sha256 = "sha256-e4me4mpK0N3UyM5MuJP3jxwM5h1dGBd+JzAr5f3BOGQ="; }; patches = [ diff --git a/pkgs/applications/networking/protonvpn-gui/default.nix b/pkgs/applications/networking/protonvpn-gui/default.nix index b6583efe730..ecfde0a39c2 100644 --- a/pkgs/applications/networking/protonvpn-gui/default.nix +++ b/pkgs/applications/networking/protonvpn-gui/default.nix @@ -1,8 +1,21 @@ -{ lib, fetchFromGitHub, gobject-introspection, imagemagick, -wrapGAppsHook, python3Packages, gtk3, networkmanager, webkitgtk }: +{ lib +, buildPythonApplication +, fetchFromGitHub +, wrapGAppsHook +, gobject-introspection +, imagemagick +, networkmanager +, pango +, webkitgtk +# Python libs +, protonvpn-nm-lib +, psutil +# Optionals +, withIndicator ? true +, libappindicator-gtk3 }: -python3Packages.buildPythonApplication rec { - pname = "protonvpn-linux-gui"; +buildPythonApplication rec { + pname = "protonvpn-gui"; version = "1.7.0"; src = fetchFromGitHub { @@ -12,22 +25,26 @@ python3Packages.buildPythonApplication rec { sha256 = "sha256-uzooFQBq2mhqTBr/cgea5cVQ889P70sgSk2vjXBQEfw="; }; - strictDeps = false; - nativeBuildInputs = [ - gobject-introspection imagemagick wrapGAppsHook + gobject-introspection + imagemagick + wrapGAppsHook ]; - propagatedBuildInputs = with python3Packages; [ + propagatedBuildInputs = [ protonvpn-nm-lib psutil ]; buildInputs = [ - gtk3 networkmanager webkitgtk - ]; + # To avoid enabling strictDeps = false (#56943) + gobject-introspection + networkmanager + pango + webkitgtk + ] ++ lib.optionals withIndicator [ libappindicator-gtk3 ]; - postFixup = '' + postInstall = '' # Setting icons for size in 16 32 48 64 72 96 128 192 512 1024; do mkdir -p $out/share/icons/hicolor/"$size"x"$size"/apps @@ -45,9 +62,9 @@ python3Packages.buildPythonApplication rec { doCheck = false; meta = with lib; { - description = "Linux GUI for ProtonVPN, written in Python"; + description = "Official ProtonVPN Linux app"; homepage = "https://github.com/ProtonVPN/linux-app"; - maintainers = with maintainers; [ offline wolfangaukang ]; + maintainers = with maintainers; [ wolfangaukang ]; license = licenses.gpl3Plus; platforms = platforms.linux; }; diff --git a/pkgs/applications/networking/remote/remmina/default.nix b/pkgs/applications/networking/remote/remmina/default.nix index 29d80c25ef5..9721c6b9ba4 100644 --- a/pkgs/applications/networking/remote/remmina/default.nix +++ b/pkgs/applications/networking/remote/remmina/default.nix @@ -15,13 +15,13 @@ with lib; stdenv.mkDerivation rec { pname = "remmina"; - version = "1.4.24"; + version = "1.4.25"; src = fetchFromGitLab { owner = "Remmina"; repo = "Remmina"; rev = "v${version}"; - sha256 = "sha256-rcxgr3HVOWA3mTfX8tka9bPGDRDtKhBRsfQ3hv9XHf0="; + sha256 = "sha256-1val/KCClEtw1prVWuXJe8DmmQ7e7oqwAfAnT9G9iHI="; }; nativeBuildInputs = [ cmake ninja pkg-config wrapGAppsHook ]; diff --git a/pkgs/applications/networking/sync/rclone/default.nix b/pkgs/applications/networking/sync/rclone/default.nix index f9fbb071b06..e23ba5cdf2a 100644 --- a/pkgs/applications/networking/sync/rclone/default.nix +++ b/pkgs/applications/networking/sync/rclone/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "rclone"; - version = "1.57.0"; + version = "1.58.0"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "0pwbprbkx5y0c93b61k8znan4aimk7dkssapjhkhzw4c38xd4lza"; + sha256 = "sha256-zCKXi3qeiq2AGT7UioVfCbB4bc5F2tXJ507zPa+O0pc="; }; - vendorSha256 = "0353pff07lwpa1jmi095kb2izcw09z73x6nninnnpyqppwzas6ha"; + vendorSha256 = "sha256-mgupx5SNQ3wUkQCeTVnw3wwdSCrTcwLYxcX6tlqXTyQ="; subPackages = [ "." ]; diff --git a/pkgs/applications/networking/sync/unison/default.nix b/pkgs/applications/networking/sync/unison/default.nix index 3e0ed7a5020..497b91ad361 100644 --- a/pkgs/applications/networking/sync/unison/default.nix +++ b/pkgs/applications/networking/sync/unison/default.nix @@ -14,13 +14,13 @@ stdenv.mkDerivation rec { pname = "unison"; - version = "2.51.5"; + version = "2.52.0"; src = fetchFromGitHub { owner = "bcpierce00"; repo = "unison"; rev = "v${version}"; - sha256 = "sha256-pi5uYwPpIy0lERmgATWQCO3EA3Pg5pnn7gxv49FaPug="; + sha256 = "sha256-YCuXkHqY+JHsguvst2UkI/6YlFt3iTvchO8PQuS15nI="; }; nativeBuildInputs = [ makeWrapper ] diff --git a/pkgs/applications/office/bookworm/default.nix b/pkgs/applications/office/bookworm/default.nix index 8bd1d8f974b..100818ad249 100644 --- a/pkgs/applications/office/bookworm/default.nix +++ b/pkgs/applications/office/bookworm/default.nix @@ -26,7 +26,6 @@ stdenv.mkDerivation rec { ]; buildInputs = [ - pantheon.elementary-icon-theme pantheon.granite glib libgee diff --git a/pkgs/applications/office/elementary-planner/default.nix b/pkgs/applications/office/elementary-planner/default.nix index d07133e9065..54ad0753c72 100644 --- a/pkgs/applications/office/elementary-planner/default.nix +++ b/pkgs/applications/office/elementary-planner/default.nix @@ -64,14 +64,27 @@ stdenv.mkDerivation rec { ]; postPatch = '' + # The GTK theme has been renamed in elementary OS 6 + # https://github.com/elementary/flatpak-platform/blob/6.1.0/io.elementary.Sdk.json#L182 + # Remove this in https://github.com/NixOS/nixpkgs/pull/159249 + substituteInPlace src/Application.vala \ + --replace '"gtk-theme-name", "elementary"' '"gtk-theme-name", "io.elementary.stylesheet.blueberry"' + + # Fix build with vala 0.56 + # https://github.com/alainm23/planner/pull/884 + substituteInPlace src/Application.vala \ + --replace "public const OptionEntry[] PLANNER_OPTIONS" "private const OptionEntry[] PLANNER_OPTIONS" + chmod +x build-aux/meson/post_install.py patchShebangs build-aux/meson/post_install.py ''; preFixup = '' gappsWrapperArgs+=( - # the theme is hardcoded + # The GTK theme is hardcoded. --prefix XDG_DATA_DIRS : "${pantheon.elementary-gtk-theme}/share" + # The icon theme is hardcoded. + --prefix XDG_DATA_DIRS : "$XDG_ICON_DIRS" ) ''; diff --git a/pkgs/applications/office/paperless-ng/default.nix b/pkgs/applications/office/paperless-ng/default.nix index e3ca9af422c..ab140f90ced 100644 --- a/pkgs/applications/office/paperless-ng/default.nix +++ b/pkgs/applications/office/paperless-ng/default.nix @@ -18,10 +18,6 @@ let py = python3.override { packageOverrides = self: super: { django = super.django_3; - django-picklefield = super.django-picklefield.overrideAttrs (oldAttrs: { - # Checks do not pass with django 3 - doInstallCheck = false; - }); # Avoid warning in django-q versions > 1.3.4 # https://github.com/jonaswinkler/paperless-ng/issues/857 # https://github.com/Koed00/django-q/issues/526 diff --git a/pkgs/applications/office/spice-up/default.nix b/pkgs/applications/office/spice-up/default.nix index 1de5a8b817b..9c716dfd9a4 100644 --- a/pkgs/applications/office/spice-up/default.nix +++ b/pkgs/applications/office/spice-up/default.nix @@ -46,7 +46,6 @@ stdenv.mkDerivation rec { libgee libgudev libsoup - pantheon.elementary-icon-theme pantheon.granite ]; diff --git a/pkgs/applications/office/zotero/default.nix b/pkgs/applications/office/zotero/default.nix index 6fb8aecbbca..53c61f0d993 100644 --- a/pkgs/applications/office/zotero/default.nix +++ b/pkgs/applications/office/zotero/default.nix @@ -1,4 +1,8 @@ -{ lib, stdenv, fetchurl, wrapGAppsHook, makeDesktopItem +{ lib +, stdenv +, fetchurl +, wrapGAppsHook +, makeDesktopItem , atk , cairo , coreutils @@ -27,7 +31,8 @@ , libXt , libnotify , gnome -, libGLU, libGL +, libGLU +, libGL , nspr , nss , pango @@ -36,55 +41,56 @@ stdenv.mkDerivation rec { pname = "zotero"; - version = "5.0.96.3"; + version = "6.0"; src = fetchurl { - url = "https://download.zotero.org/client/release/${version}/Zotero-${version}_linux-x86_64.tar.bz2"; - sha256 = "sha256-eqSNzmkGNopGJ7VByvUffFEPJz3WHS7b5+jgUAW/hU4="; + url = + "https://download.zotero.org/client/release/${version}/Zotero-${version}_linux-x86_64.tar.bz2"; + sha256 = "0zkgmmflcj6vbyv8rs51jf3vx1zq8pl7b5d5asgayhrdlwi0qgff"; }; nativeBuildInputs = [ wrapGAppsHook ]; - buildInputs= [ gsettings-desktop-schemas glib gtk3 gnome.adwaita-icon-theme dconf ]; + buildInputs = + [ gsettings-desktop-schemas glib gtk3 gnome.adwaita-icon-theme dconf ]; dontConfigure = true; dontBuild = true; dontStrip = true; dontPatchELF = true; - libPath = lib.makeLibraryPath - [ stdenv.cc.cc - atk - cairo - curl - cups - dbus-glib - dbus - fontconfig - freetype - gdk-pixbuf - glib - glibc - gtk3 - libX11 - libXScrnSaver - libXcomposite - libXcursor - libxcb - libXdamage - libXext - libXfixes - libXi - libXinerama - libXrender - libXt - libnotify - libGLU libGL - nspr - nss - pango - ] + ":" + lib.makeSearchPathOutput "lib" "lib64" [ - stdenv.cc.cc - ]; + libPath = lib.makeLibraryPath [ + stdenv.cc.cc + atk + cairo + curl + cups + dbus-glib + dbus + fontconfig + freetype + gdk-pixbuf + glib + glibc + gtk3 + libX11 + libXScrnSaver + libXcomposite + libXcursor + libxcb + libXdamage + libXext + libXfixes + libXi + libXinerama + libXrender + libXt + libnotify + libGLU + libGL + nspr + nss + pango + ] + ":" + lib.makeSearchPathOutput "lib" "lib64" [ stdenv.cc.cc ]; postPatch = '' sed -i '/pref("app.update.enabled", true);/c\pref("app.update.enabled", false);' defaults/preferences/prefs.js diff --git a/pkgs/applications/radio/freedv/default.nix b/pkgs/applications/radio/freedv/default.nix index 43cf58db258..8d97c8bbedb 100644 --- a/pkgs/applications/radio/freedv/default.nix +++ b/pkgs/applications/radio/freedv/default.nix @@ -1,16 +1,18 @@ -{ lib +{ config +, lib , stdenv , fetchFromGitHub , cmake , codec2 +, libpulseaudio , libsamplerate , libsndfile , lpcnetfreedv , portaudio -, pulseaudio , speexdsp , hamlib , wxGTK31-gtk3 +, pulseSupport ? config.pulseaudio or stdenv.isLinux }: stdenv.mkDerivation rec { @@ -33,17 +35,18 @@ stdenv.mkDerivation rec { speexdsp hamlib wxGTK31-gtk3 - ] ++ (if stdenv.isLinux then [ pulseaudio ] else [ portaudio ]); + ] ++ (if pulseSupport then [ libpulseaudio ] else [ portaudio ]); cmakeFlags = [ "-DUSE_INTERNAL_CODEC2:BOOL=FALSE" "-DUSE_STATIC_DEPS:BOOL=FALSE" - ] ++ lib.optionals stdenv.isLinux [ "-DUSE_PULSEAUDIO:BOOL=TRUE" ]; + ] ++ lib.optionals pulseSupport [ "-DUSE_PULSEAUDIO:BOOL=TRUE" ]; meta = with lib; { homepage = "https://freedv.org/"; description = "Digital voice for HF radio"; license = licenses.lgpl21; maintainers = with maintainers; [ mvs ]; + platforms = platforms.unix; }; } diff --git a/pkgs/applications/science/astronomy/phd2/default.nix b/pkgs/applications/science/astronomy/phd2/default.nix index 543e6820a76..52049302a27 100644 --- a/pkgs/applications/science/astronomy/phd2/default.nix +++ b/pkgs/applications/science/astronomy/phd2/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { pname = "phd2"; - version = "2.6.10"; + version = "2.6.11"; src = fetchFromGitHub { owner = "OpenPHDGuiding"; repo = "phd2"; rev = "v${version}"; - sha256 = "sha256-2ZiPjhlguWXFcC53xG1aqAode7twtoHWszFUMQkK5xU="; + sha256 = "sha256-iautgHOVzdLWYGOVu3wHBDt30uCbaP58mDz/l7buB1k="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/science/astronomy/siril/default.nix b/pkgs/applications/science/astronomy/siril/default.nix index b50cb4b71d0..4a51e88dc3b 100644 --- a/pkgs/applications/science/astronomy/siril/default.nix +++ b/pkgs/applications/science/astronomy/siril/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "siril"; - version = "0.99.10.1"; + version = "1.0.0"; src = fetchFromGitLab { owner = "free-astro"; repo = pname; rev = version; - sha256 = "sha256-gqV+pJNaU+GnYiUo/imofgNdeM+AtDg/pSH7aoqhkYA="; + sha256 = "sha256-yqWFEa1fnSwl0ecN9hMI13QCfj0f69CFqTJlEAhTpJI="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/science/chemistry/jmol/default.nix b/pkgs/applications/science/chemistry/jmol/default.nix index 3f837edb4c8..246618d4eaf 100644 --- a/pkgs/applications/science/chemistry/jmol/default.nix +++ b/pkgs/applications/science/chemistry/jmol/default.nix @@ -25,14 +25,14 @@ let }; in stdenv.mkDerivation rec { - version = "14.32.30"; + version = "14.32.33"; pname = "jmol"; src = let baseVersion = "${lib.versions.major version}.${lib.versions.minor version}"; in fetchurl { url = "mirror://sourceforge/jmol/Jmol/Version%20${baseVersion}/Jmol%20${version}/Jmol-${version}-binary.tar.gz"; - sha256 = "sha256-VpOoduUA0iD+nI83GSQYQDHoK2Snog0NHkHWHfpLqFM="; + sha256 = "sha256-aImV5zgXjsXdRJLrYIomDymXHRhxuOwGYAwpMIr7wak="; }; patchPhase = '' diff --git a/pkgs/applications/science/computer-architecture/qtrvsim/default.nix b/pkgs/applications/science/computer-architecture/qtrvsim/default.nix index 24d9f642ec5..fc840fe45fb 100644 --- a/pkgs/applications/science/computer-architecture/qtrvsim/default.nix +++ b/pkgs/applications/science/computer-architecture/qtrvsim/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "QtRVSim"; - version = "0.9.1"; + version = "0.9.2"; src = fetchFromGitHub { owner = "cvut"; repo = "qtrvsim"; rev = "refs/tags/v${version}"; - sha256 = "AOksVS0drIBnK4RCxZw40yVxf4E8GjG9kU0rIZsY9gA="; + sha256 = "B1l+ysrodeDbxYfdLLMF8yk4/uPXTcDrTaMtYm89HuU="; }; nativeBuildInputs = [ cmake wrapQtAppsHook ]; diff --git a/pkgs/applications/science/electronics/gaw/default.nix b/pkgs/applications/science/electronics/gaw/default.nix index 928613737b4..7f0b5625e85 100644 --- a/pkgs/applications/science/electronics/gaw/default.nix +++ b/pkgs/applications/science/electronics/gaw/default.nix @@ -7,11 +7,11 @@ stdenv.mkDerivation rec { pname = "gaw"; - version = "20200922"; + version = "20220315"; src = fetchurl { url = "https://download.tuxfamily.org/gaw/download/gaw3-${version}.tar.gz"; - sha256 = "0qmap11v470a1yj4ypfvdq6wkfni77ijqpknka8b4fndi62sl4wa"; + sha256 = "0j2bqi9444s1mfbr7x9rqp232xf7ab9z7ifsnl305jsklp6qmrbg"; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/applications/science/logic/isabelle/default.nix b/pkgs/applications/science/logic/isabelle/default.nix index aaac288b615..1c613419cc8 100644 --- a/pkgs/applications/science/logic/isabelle/default.nix +++ b/pkgs/applications/science/logic/isabelle/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, coreutils, nettools, java, scala, polyml, z3, veriT, vampire, eprover-ho, rlwrap, perl, makeDesktopItem }: +{ lib, stdenv, fetchurl, coreutils, nettools, java, scala, polyml, z3, veriT, vampire, eprover-ho, naproche, rlwrap, perl, makeDesktopItem }: # nettools needed for hostname stdenv.mkDerivation rec { @@ -66,7 +66,8 @@ stdenv.mkDerivation rec { ISABELLE_JDK_HOME=${java} EOF - sed -i -e 's/naproche_server : bool = true/naproche_server : bool = false/' contrib/naproche-*/etc/options + rm contrib/naproche-*/x86*/Naproche-SAD + ln -s ${naproche}/bin/Naproche-SAD contrib/naproche-*/x86*/ echo ISABELLE_LINE_EDITOR=${rlwrap}/bin/rlwrap >>etc/settings diff --git a/pkgs/applications/science/logic/lean/default.nix b/pkgs/applications/science/logic/lean/default.nix index 1eea97a0fd2..b5e5ca8723d 100644 --- a/pkgs/applications/science/logic/lean/default.nix +++ b/pkgs/applications/science/logic/lean/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "lean"; - version = "3.41.0"; + version = "3.42.0"; src = fetchFromGitHub { owner = "leanprover-community"; @@ -11,8 +11,8 @@ stdenv.mkDerivation rec { # from. this is then used to check whether an olean file should be # rebuilt. don't use a tag as rev because this will get replaced into # src/githash.h.in in preConfigure. - rev = "154ac72f4ff674bc4486ac611f926a3d6b999f9f"; - sha256 = "0mpxlfjq460x1vi3v6qzgjv74asg0qlhykd51pj347795x5b1hf1"; + rev = "b35d4695da88139a9168f2ad7acf0782e66dc4f0"; + sha256 = "02rpigw6lnyjw8ccrlp2mcvswawkhl5y6kqa3zq76qp1fdjqjrbp"; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/applications/science/logic/naproche/default.nix b/pkgs/applications/science/logic/naproche/default.nix new file mode 100644 index 00000000000..5e286a9b57e --- /dev/null +++ b/pkgs/applications/science/logic/naproche/default.nix @@ -0,0 +1,38 @@ +{ lib, fetchFromGitHub, haskellPackages, makeWrapper, eprover }: + +with haskellPackages; mkDerivation { + pname = "Naproche-SAD"; + version = "0.1.0.0"; + + src = fetchFromGitHub { + owner = "naproche"; + repo = "naproche"; + rev = "d39cea85ace04d5b3775fde9972a33886799bfe6"; + sha256 = "1zqrldmxkzbyg9bssrbwb00zic29904igcipaz1m9al0456yjnkf"; + }; + + isExecutable = true; + + buildTools = [ hpack makeWrapper ]; + executableHaskellDepends = [ + base array bytestring containers ghc-prim megaparsec mtl network process + split temporary text threads time transformers uuid + ]; + + prePatch = "hpack"; + + checkPhase = '' + export NAPROCHE_EPROVER=${eprover}/bin/eprover + dist/build/Naproche-SAD/Naproche-SAD examples/cantor.ftl.tex -t 60 --tex=on + ''; + + postInstall = '' + wrapProgram $out/bin/Naproche-SAD \ + --set-default NAPROCHE_EPROVER ${eprover}/bin/eprover + ''; + + homepage = "https://github.com/naproche/naproche#readme"; + description = "Write formal proofs in natural language and LaTeX"; + maintainers = with lib.maintainers; [ jvanbruegge ]; + license = lib.licenses.gpl3Only; +} diff --git a/pkgs/applications/science/logic/nuXmv/default.nix b/pkgs/applications/science/logic/nuXmv/default.nix new file mode 100644 index 00000000000..021c612d106 --- /dev/null +++ b/pkgs/applications/science/logic/nuXmv/default.nix @@ -0,0 +1,25 @@ +{ lib, stdenv, fetchurl }: + +stdenv.mkDerivation rec { + pname = "nuXmv"; + version = "2.0.0"; + + src = fetchurl { + url = "https://es-static.fbk.eu/tools/nuxmv/downloads/nuXmv-${version}-linux64.tar.gz"; + sha256 = "0nndrw994clf8lnlcfzdf1mf00vif3fvd4xsiwcjpbyk12091zqr"; + }; + + installPhase= '' + runHook preInstall + install -Dm755 -t $out/bin ./bin/nuXmv + runHook postInstall + ''; + + meta = with lib; { + description = "Symbolic model checker for analysis of finite and infinite state systems"; + homepage = "https://nuxmv.fbk.eu/pmwiki.php"; + license = licenses.unfree; + maintainers = with maintainers; [ siraben ]; + platforms = [ "x86_64-linux" ]; + }; +} diff --git a/pkgs/applications/science/logic/opensmt/default.nix b/pkgs/applications/science/logic/opensmt/default.nix index ef6f9b157d2..9f104ab80a6 100644 --- a/pkgs/applications/science/logic/opensmt/default.nix +++ b/pkgs/applications/science/logic/opensmt/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "opensmt"; - version = "2.3.0"; + version = "2.3.1"; src = fetchFromGitHub { owner = "usi-verification-and-security"; repo = "opensmt"; rev = "v${version}"; - sha256 = "sha256-5Gw9+J+3LHNUNbcHxsQR/ivWndL2P7yBt/Q35fBMg58="; + sha256 = "sha256-3F4Q/ZWlgkiiW7QVjnaaDLSNLVdfAOSmwYdQo1v9Lv4="; }; nativeBuildInputs = [ cmake bison flex ]; diff --git a/pkgs/applications/science/math/R/default.nix b/pkgs/applications/science/math/R/default.nix index 4bd237f8783..f91d72ff3f6 100644 --- a/pkgs/applications/science/math/R/default.nix +++ b/pkgs/applications/science/math/R/default.nix @@ -14,11 +14,11 @@ assert (!blas.isILP64) && (!lapack.isILP64); stdenv.mkDerivation rec { pname = "R"; - version = "4.1.2"; + version = "4.1.3"; src = fetchurl { url = "https://cran.r-project.org/src/base/R-${lib.versions.major version}/${pname}-${version}.tar.gz"; - sha256 = "sha256-IDYiXp9yB9TOCX5Ulyrs2qi0DX2ZEc0mSR+sWg+rOK8="; + sha256 = "sha256-Ff9bMzxhCUBgsqUunB2OxVzELdAp45yiKr2qkJUm/tY="; }; dontUseImakeConfigure = true; diff --git a/pkgs/applications/science/math/nasc/default.nix b/pkgs/applications/science/math/nasc/default.nix index 2fe027365cd..3e7a8b56af1 100644 --- a/pkgs/applications/science/math/nasc/default.nix +++ b/pkgs/applications/science/math/nasc/default.nix @@ -48,7 +48,6 @@ stdenv.mkDerivation rec { gtk3 gtksourceview libgee - pantheon.elementary-icon-theme pantheon.granite webkitgtk # We add libqalculate's runtime dependencies because nasc has it as a modified subproject. diff --git a/pkgs/applications/science/math/qalculate-gtk/default.nix b/pkgs/applications/science/math/qalculate-gtk/default.nix index 7ba5838faba..4f68eb6ae78 100644 --- a/pkgs/applications/science/math/qalculate-gtk/default.nix +++ b/pkgs/applications/science/math/qalculate-gtk/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "qalculate-gtk"; - version = "4.0.0"; + version = "4.1.0"; src = fetchFromGitHub { owner = "qalculate"; repo = "qalculate-gtk"; rev = "v${version}"; - sha256 = "sha256-l9lR5MVHWiRz5RG/I/nXRY4GQSSaXXP7PlRNoAu9+yo="; + sha256 = "sha256-EOiExp8JBc3SybSiBVbuRxBqTujzLjysWM0v94goups="; }; hardeningDisable = [ "format" ]; diff --git a/pkgs/applications/science/math/sage/patches/no-cython-sources-in-tracebacks-on-ipython8.patch b/pkgs/applications/science/math/sage/patches/no-cython-sources-in-tracebacks-on-ipython8.patch deleted file mode 100644 index 871e494c362..00000000000 --- a/pkgs/applications/science/math/sage/patches/no-cython-sources-in-tracebacks-on-ipython8.patch +++ /dev/null @@ -1,52 +0,0 @@ -diff --git a/src/sage/repl/interface_magic.py b/src/sage/repl/interface_magic.py -index 8a455b69b0..a93e1c9e04 100644 ---- a/src/sage/repl/interface_magic.py -+++ b/src/sage/repl/interface_magic.py -@@ -260,7 +260,7 @@ class InterfaceMagic(object): - 2 - 120 - sage: shell.run_cell('%%gap foo\n1+1;\n') -- ...File "<string>", line unknown -+ ...File...<string>... - SyntaxError: Interface magics have no options, got "foo" - <BLANKLINE> - sage: shell.run_cell('%%gap?') -diff --git a/src/sage/repl/interpreter.py b/src/sage/repl/interpreter.py -index 71dbe429fd..36b1d986d6 100644 ---- a/src/sage/repl/interpreter.py -+++ b/src/sage/repl/interpreter.py -@@ -70,25 +70,6 @@ that shell. The bulk of this functionality is provided through - - TESTS: - --Check that Cython source code appears in tracebacks:: -- -- sage: from sage.repl.interpreter import get_test_shell -- sage: shell = get_test_shell() -- sage: print("dummy line"); shell.run_cell('1/0') # see #25320 for the reason of the `...` and the dummy line in this test -- dummy line -- ... -- ZeroDivisionError...Traceback (most recent call last) -- <ipython-input-...> in <module>... -- ----> 1 Integer(1)/Integer(0) -- .../sage/rings/integer.pyx in sage.rings.integer.Integer...div... -- ... -- -> ... raise ZeroDivisionError("rational division by zero") -- ....: x = <Rational> Rational.__new__(Rational) -- ....: mpq_div_zz(x.value, ....value, (<Integer>right).value) -- <BLANKLINE> -- ZeroDivisionError: rational division by zero -- sage: shell.quit() -- - Test prompt transformer:: - - sage: from sage.repl.interpreter import SagePromptTransformer -@@ -423,7 +404,7 @@ def SagePreparseTransformer(lines): - sage: from sage.repl.interpreter import get_test_shell - sage: shell = get_test_shell() - sage: shell.run_cell(bad_syntax) -- File "<string>", line unknown -+ File...<string>... - SyntaxError: Mismatched ']' - <BLANKLINE> - sage: shell.quit() diff --git a/pkgs/applications/science/math/sage/sage-src.nix b/pkgs/applications/science/math/sage/sage-src.nix index bae33802d30..22e3a288b7d 100644 --- a/pkgs/applications/science/math/sage/sage-src.nix +++ b/pkgs/applications/science/math/sage/sage-src.nix @@ -119,15 +119,13 @@ stdenv.mkDerivation rec { # https://trac.sagemath.org/ticket/32959 ./patches/linbox-1.7-upgrade.patch - # To emit better tracebacks, IPython 8 parses Python files using the ast - # module (via the stack_data package). Since Cython is a superset of Python, - # this results in no Cython code being printed in tracebacks. Fixing this - # properly is tracked in https://github.com/alexmojaki/stack_data/issues/21, - # but for now we just disable the corresponding test. An alternative would - # be to revert IPython's IPython/core/ultratb.py, but this would need to be - # Sage-specific (since it would worsen tracebacks for pure Python code). - # Sage tracks this at https://trac.sagemath.org/ticket/33170 - ./patches/no-cython-sources-in-tracebacks-on-ipython8.patch + # https://trac.sagemath.org/ticket/33170 + (fetchSageDiff { + base = "9.5.rc1"; + name = "ipython-8-update.patch"; + rev = "a90a314616d86d6be9c0d5233f0d36c4bfe06231"; + sha256 = "sha256-pXdtokTo84xNCnV+HyAKEzG562z8FjzJ7hczOja0dRw="; + }) # https://trac.sagemath.org/ticket/32968 (fetchSageDiff { diff --git a/pkgs/applications/system/monitor/default.nix b/pkgs/applications/system/monitor/default.nix index 653d727525e..5de6e1165dc 100644 --- a/pkgs/applications/system/monitor/default.nix +++ b/pkgs/applications/system/monitor/default.nix @@ -25,13 +25,13 @@ stdenv.mkDerivation rec { pname = "monitor"; - version = "0.12.0"; + version = "0.13.0"; src = fetchFromGitHub { owner = "stsdc"; repo = "monitor"; rev = version; - sha256 = "1fv98yz9393ddp0k96bwbgccy6x9dmmg8g1pjd3xs6m4c1bnvfc7"; + sha256 = "sha256-qwx60cp3Q6PL1iwRP+M9Rtmxcis0EByi8fk13H4cXfc="; fetchSubmodules = true; }; @@ -90,7 +90,7 @@ stdenv.mkDerivation rec { homepage = "https://github.com/stsdc/monitor"; maintainers = with maintainers; [ xiorcale ] ++ teams.pantheon.members; platforms = platforms.linux; - license = licenses.gpl3; + license = licenses.gpl3Plus; mainProgram = "com.github.stsdc.monitor"; }; } diff --git a/pkgs/applications/terminal-emulators/alacritty/default.nix b/pkgs/applications/terminal-emulators/alacritty/default.nix index e7730ba4b94..e6762f543cb 100644 --- a/pkgs/applications/terminal-emulators/alacritty/default.nix +++ b/pkgs/applications/terminal-emulators/alacritty/default.nix @@ -3,6 +3,7 @@ , fetchFromGitHub , fetchpatch , rustPlatform +, nixosTests , cmake , gzip @@ -132,6 +133,8 @@ rustPlatform.buildRustPackage rec { dontPatchELF = true; + passthru.tests.test = nixosTests.terminal-emulators.alacritty; + meta = with lib; { description = "A cross-platform, GPU-accelerated terminal emulator"; homepage = "https://github.com/alacritty/alacritty"; diff --git a/pkgs/applications/terminal-emulators/contour/default.nix b/pkgs/applications/terminal-emulators/contour/default.nix index 6ef16a5b9e4..d0def97e46f 100644 --- a/pkgs/applications/terminal-emulators/contour/default.nix +++ b/pkgs/applications/terminal-emulators/contour/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, mkDerivation, fetchFromGitHub, cmake, pkg-config, freetype, libGL, pcre }: +{ lib, stdenv, mkDerivation, fetchFromGitHub, cmake, pkg-config, freetype, libGL, pcre, nixosTests }: mkDerivation rec { pname = "contour"; @@ -16,6 +16,8 @@ mkDerivation rec { buildInputs = [ freetype libGL pcre ]; + passthru.tests.test = nixosTests.terminal-emulators.contour; + meta = with lib; { description = "Modern C++ Terminal Emulator"; homepage = "https://github.com/christianparpart/contour"; diff --git a/pkgs/applications/terminal-emulators/cool-retro-term/default.nix b/pkgs/applications/terminal-emulators/cool-retro-term/default.nix index 049452c7e3a..4243502e7fe 100644 --- a/pkgs/applications/terminal-emulators/cool-retro-term/default.nix +++ b/pkgs/applications/terminal-emulators/cool-retro-term/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, fetchFromGitHub, mkDerivation, qtbase, qtquick1, qmltermwidget -, qtquickcontrols, qtgraphicaleffects, qmake }: +, qtquickcontrols, qtgraphicaleffects, qmake, nixosTests }: mkDerivation rec { version = "1.1.1"; @@ -29,6 +29,8 @@ mkDerivation rec { ln -s $out/bin/cool-retro-term.app/Contents/MacOS/cool-retro-term $out/bin/cool-retro-term ''; + passthru.tests.test = nixosTests.terminal-emulators.cool-retro-term; + meta = { description = "Terminal emulator which mimics the old cathode display"; longDescription = '' diff --git a/pkgs/applications/terminal-emulators/ctx/default.nix b/pkgs/applications/terminal-emulators/ctx/default.nix index 78c673d035a..420e9b020e9 100644 --- a/pkgs/applications/terminal-emulators/ctx/default.nix +++ b/pkgs/applications/terminal-emulators/ctx/default.nix @@ -8,6 +8,7 @@ , libdrm # Not documented , pkg-config , enableFb ? false +, nixosTests }: stdenv.mkDerivation rec { @@ -43,6 +44,8 @@ stdenv.mkDerivation rec { "PREFIX=${placeholder "out"}" ]; + passthru.tests.test = nixosTests.terminal-emulators.ctx; + meta = with lib; { homepage = "https://ctx.graphics/"; description = "Vector graphics terminal"; diff --git a/pkgs/applications/terminal-emulators/darktile/default.nix b/pkgs/applications/terminal-emulators/darktile/default.nix index f6323294950..17af8457cb1 100644 --- a/pkgs/applications/terminal-emulators/darktile/default.nix +++ b/pkgs/applications/terminal-emulators/darktile/default.nix @@ -12,6 +12,7 @@ , libXext , libXxf86vm , libGL +, nixosTests }: stdenv.mkDerivation rec { @@ -57,6 +58,8 @@ stdenv.mkDerivation rec { runHook postInstall ''; + passthru.tests.test = nixosTests.terminal-emulators.darktile; + meta = with lib; { description = "A GPU rendered terminal emulator designed for tiling window managers"; homepage = "https://github.com/liamg/darktile"; diff --git a/pkgs/applications/terminal-emulators/eterm/default.nix b/pkgs/applications/terminal-emulators/eterm/default.nix index 328e61f1fe5..769104fea43 100644 --- a/pkgs/applications/terminal-emulators/eterm/default.nix +++ b/pkgs/applications/terminal-emulators/eterm/default.nix @@ -8,6 +8,7 @@ , libXext , libast , pkg-config +, nixosTests }: stdenv.mkDerivation rec { @@ -33,6 +34,8 @@ stdenv.mkDerivation rec { libast ]; + passthru.tests.test = nixosTests.terminal-emulators.eterm; + meta = with lib; { homepage = "https://github.com/mej/Eterm"; # http://www.eterm.org is gone description = "Terminal emulator"; diff --git a/pkgs/applications/terminal-emulators/germinal/default.nix b/pkgs/applications/terminal-emulators/germinal/default.nix index 1bbe87853f7..aef24f675b1 100644 --- a/pkgs/applications/terminal-emulators/germinal/default.nix +++ b/pkgs/applications/terminal-emulators/germinal/default.nix @@ -9,6 +9,7 @@ , tmux , vte , wrapGAppsHook +, nixosTests }: stdenv.mkDerivation rec { @@ -45,6 +46,8 @@ stdenv.mkDerivation rec { runHook postFixup ''; + passthru.tests.test = nixosTests.terminal-emulators.germinal; + meta = with lib; { description = "A minimal terminal emulator"; homepage = "https://github.com/Keruspe/Germinal"; diff --git a/pkgs/applications/terminal-emulators/guake/default.nix b/pkgs/applications/terminal-emulators/guake/default.nix index 8c4c6b383d5..cc2dc5c55d6 100644 --- a/pkgs/applications/terminal-emulators/guake/default.nix +++ b/pkgs/applications/terminal-emulators/guake/default.nix @@ -10,6 +10,7 @@ , libutempter , vte , libwnck +, nixosTests }: python3.pkgs.buildPythonApplication rec { @@ -66,6 +67,8 @@ python3.pkgs.buildPythonApplication rec { gappsWrapperArgs+=(--prefix LD_LIBRARY_PATH : "${lib.makeLibraryPath [ libutempter ]}") ''; + passthru.tests.test = nixosTests.terminal-emulators.guake; + meta = with lib; { description = "Drop-down terminal for GNOME"; homepage = "http://guake-project.org"; diff --git a/pkgs/applications/terminal-emulators/hyper/default.nix b/pkgs/applications/terminal-emulators/hyper/default.nix index a2b3d13b36a..485c1dead14 100644 --- a/pkgs/applications/terminal-emulators/hyper/default.nix +++ b/pkgs/applications/terminal-emulators/hyper/default.nix @@ -2,7 +2,7 @@ , freetype, fontconfig, dbus, libXi, libXcursor, libXdamage, libXrandr, libXcomposite , libXext, libXfixes, libXrender, libX11, libXtst, libXScrnSaver, libxcb, nss, nspr , alsa-lib, cups, expat, udev, libpulseaudio, at-spi2-atk, at-spi2-core, libxshmfence -, libdrm, libxkbcommon, mesa }: +, libdrm, libxkbcommon, mesa, nixosTests}: let libPath = lib.makeLibraryPath [ @@ -43,6 +43,8 @@ stdenv.mkDerivation rec { --replace "/opt/Hyper/hyper" "hyper" ''; + passthru.tests.test = nixosTests.terminal-emulators.hyper; + dontPatchELF = true; meta = with lib; { description = "A terminal built on web technologies"; diff --git a/pkgs/applications/terminal-emulators/kermit-terminal/default.nix b/pkgs/applications/terminal-emulators/kermit-terminal/default.nix index 8a5a7856414..da5342aa683 100644 --- a/pkgs/applications/terminal-emulators/kermit-terminal/default.nix +++ b/pkgs/applications/terminal-emulators/kermit-terminal/default.nix @@ -6,6 +6,7 @@ , pcre , pkg-config , vte +, nixosTests }: stdenv.mkDerivation rec { @@ -31,6 +32,8 @@ stdenv.mkDerivation rec { vte ]; + passthru.tests.test = nixosTests.terminal-emulators.kermit; + meta = with lib; { homepage = "https://github.com/orhun/kermit"; description = "A VTE-based, simple and froggy terminal emulator"; diff --git a/pkgs/applications/terminal-emulators/kgx/default.nix b/pkgs/applications/terminal-emulators/kgx/default.nix index dc5c651d50a..1be9412e8da 100644 --- a/pkgs/applications/terminal-emulators/kgx/default.nix +++ b/pkgs/applications/terminal-emulators/kgx/default.nix @@ -18,6 +18,7 @@ , python3 , sassc , wrapGAppsHook +, nixosTests }: stdenv.mkDerivation { @@ -66,6 +67,8 @@ stdenv.mkDerivation { --replace "Exec=kgx" "Exec=$out/bin/kgx" ''; + passthru.tests.test = nixosTests.terminal-emulators.kgx; + meta = with lib; { description = "Simple user-friendly terminal emulator for the GNOME desktop"; homepage = "https://gitlab.gnome.org/ZanderBrown/kgx"; diff --git a/pkgs/applications/terminal-emulators/kitty/default.nix b/pkgs/applications/terminal-emulators/kitty/default.nix index 1e6db04dd76..d06c6d937c1 100644 --- a/pkgs/applications/terminal-emulators/kitty/default.nix +++ b/pkgs/applications/terminal-emulators/kitty/default.nix @@ -22,6 +22,7 @@ , zsh , fish , fetchpatch +, nixosTests }: with python3Packages; @@ -176,6 +177,8 @@ buildPythonApplication rec { runHook postInstall ''; + passthru.tests.test = nixosTests.terminal-emulators.kitty; + meta = with lib; { homepage = "https://github.com/kovidgoyal/kitty"; description = "A modern, hackable, featureful, OpenGL based terminal emulator"; diff --git a/pkgs/applications/terminal-emulators/lxterminal/default.nix b/pkgs/applications/terminal-emulators/lxterminal/default.nix index 25495a68683..13f4e3c4119 100644 --- a/pkgs/applications/terminal-emulators/lxterminal/default.nix +++ b/pkgs/applications/terminal-emulators/lxterminal/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, fetchFromGitHub, automake, autoconf, intltool, pkg-config, gtk3, vte, wrapGAppsHook -, libxslt, docbook_xml_dtd_412, docbook_xsl, libxml2, findXMLCatalogs +, libxslt, docbook_xml_dtd_412, docbook_xsl, libxml2, findXMLCatalogs, nixosTests }: stdenv.mkDerivation rec { @@ -35,6 +35,8 @@ stdenv.mkDerivation rec { doCheck = true; + passthru.tests.test = nixosTests.terminal-emulators.lxterminal; + meta = { description = "The standard terminal emulator of LXDE"; longDescription = '' diff --git a/pkgs/applications/terminal-emulators/mlterm/default.nix b/pkgs/applications/terminal-emulators/mlterm/default.nix index d84aa984a33..056a2413844 100644 --- a/pkgs/applications/terminal-emulators/mlterm/default.nix +++ b/pkgs/applications/terminal-emulators/mlterm/default.nix @@ -1,4 +1,4 @@ -{ stdenv, lib, fetchFromGitHub, pkg-config, autoconf, makeDesktopItem +{ stdenv, lib, fetchFromGitHub, pkg-config, autoconf, makeDesktopItem, nixosTests , libX11, gdk-pixbuf, cairo, libXft, gtk3, vte , harfbuzz #substituting glyphs with opentype fonts , fribidi, m17n_lib #bidi and encoding @@ -110,6 +110,8 @@ stdenv.mkDerivation rec { startupNotify = false; }; + passthru.tests.test = nixosTests.terminal-emulators.mlterm; + meta = with lib; { description = "Multi Lingual TERMinal emulator"; homepage = "http://mlterm.sourceforge.net/"; diff --git a/pkgs/applications/terminal-emulators/mrxvt/default.nix b/pkgs/applications/terminal-emulators/mrxvt/default.nix index ba6c6ab87c1..006616bd944 100644 --- a/pkgs/applications/terminal-emulators/mrxvt/default.nix +++ b/pkgs/applications/terminal-emulators/mrxvt/default.nix @@ -10,6 +10,7 @@ , freetype , pkg-config , which +, nixosTests }: stdenv.mkDerivation rec { @@ -38,6 +39,8 @@ stdenv.mkDerivation rec { NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -I${freetype.dev}/include/freetype2"; ''; + passthru.tests.test = nixosTests.terminal-emulators.mrxvt; + meta = with lib; { description = "Lightweight multitabbed feature-rich X11 terminal emulator"; longDescription = " diff --git a/pkgs/applications/terminal-emulators/roxterm/default.nix b/pkgs/applications/terminal-emulators/roxterm/default.nix index 3e4454726b6..7444a8627b7 100644 --- a/pkgs/applications/terminal-emulators/roxterm/default.nix +++ b/pkgs/applications/terminal-emulators/roxterm/default.nix @@ -1,7 +1,7 @@ { at-spi2-core, cmake, dbus, dbus-glib, docbook_xsl, libepoxy, fetchFromGitHub , glib, gtk3, harfbuzz, libXdmcp, libXtst, libpthreadstubs , libselinux, libsepol, libtasn1, libxkbcommon, libxslt, p11-kit, pcre2 -, pkg-config, lib, stdenv, util-linuxMinimal, vte, wrapGAppsHook, xmlto +, pkg-config, lib, stdenv, util-linuxMinimal, vte, wrapGAppsHook, xmlto, nixosTests }: stdenv.mkDerivation rec { @@ -23,6 +23,8 @@ stdenv.mkDerivation rec { libsepol libxkbcommon libepoxy at-spi2-core libXtst libtasn1 p11-kit ]; + passthru.tests.test = nixosTests.terminal-emulators.roxterm; + meta = with lib; { homepage = "https://github.com/realh/roxterm"; license = licenses.gpl3; diff --git a/pkgs/applications/terminal-emulators/rxvt-unicode/default.nix b/pkgs/applications/terminal-emulators/rxvt-unicode/default.nix index 1ca84149fdd..0eccceb5a4f 100644 --- a/pkgs/applications/terminal-emulators/rxvt-unicode/default.nix +++ b/pkgs/applications/terminal-emulators/rxvt-unicode/default.nix @@ -7,6 +7,7 @@ , gdkPixbufSupport ? true , unicode3Support ? true , emojiSupport ? false +, nixosTests }: let @@ -102,6 +103,8 @@ stdenv.mkDerivation { cp -r ${desktopItem}/share/applications/ $out/share/ ''; + passthru.tests.test = nixosTests.terminal-emulators.urxvt; + meta = { inherit description; homepage = "http://software.schmorp.de/pkg/rxvt-unicode.html"; diff --git a/pkgs/applications/terminal-emulators/rxvt-unicode/wrapper.nix b/pkgs/applications/terminal-emulators/rxvt-unicode/wrapper.nix index 5255d40b9ce..9fe78e30ae3 100644 --- a/pkgs/applications/terminal-emulators/rxvt-unicode/wrapper.nix +++ b/pkgs/applications/terminal-emulators/rxvt-unicode/wrapper.nix @@ -5,6 +5,7 @@ , rxvt-unicode-unwrapped , rxvt-unicode-plugins , perlPackages +, nixosTests , configure ? { availablePlugins, ... }: { plugins = builtins.attrValues availablePlugins; extraDeps = [ ]; @@ -51,7 +52,10 @@ let --suffix-each URXVT_PERL_LIB ':' "$out/lib/urxvt/perl" ''; - passthru.plugins = plugins; + passthru = { + plugins = plugins; + tests.test = nixosTests.terminal-emulators.urxvt; + }; }; in diff --git a/pkgs/applications/terminal-emulators/sakura/default.nix b/pkgs/applications/terminal-emulators/sakura/default.nix index 8434c233ad4..52b35ad38ae 100644 --- a/pkgs/applications/terminal-emulators/sakura/default.nix +++ b/pkgs/applications/terminal-emulators/sakura/default.nix @@ -9,6 +9,7 @@ , perl , pkg-config , vte +, nixosTests }: stdenv.mkDerivation rec { @@ -43,6 +44,8 @@ stdenv.mkDerivation rec { --suffix XDG_DATA_DIRS : ${gtk3}/share/gsettings-schemas/${gtk3.name}/ ''; + passthru.tests.test = nixosTests.terminal-emulators.sakura; + meta = with lib; { homepage = "https://www.pleyades.net/david/projects/sakura"; description = "A terminal emulator based on GTK and VTE"; diff --git a/pkgs/applications/terminal-emulators/st/default.nix b/pkgs/applications/terminal-emulators/st/default.nix index 35baec9d0e4..efbdc040589 100644 --- a/pkgs/applications/terminal-emulators/st/default.nix +++ b/pkgs/applications/terminal-emulators/st/default.nix @@ -11,6 +11,7 @@ , conf ? null , patches ? [ ] , extraLibs ? [ ] +, nixosTests }: stdenv.mkDerivation rec { @@ -55,6 +56,8 @@ stdenv.mkDerivation rec { installFlags = [ "PREFIX=$(out)" ]; + passthru.tests.test = nixosTests.terminal-emulators.st; + meta = with lib; { homepage = "https://st.suckless.org/"; description = "Simple Terminal for X from Suckless.org Community"; diff --git a/pkgs/applications/terminal-emulators/stupidterm/default.nix b/pkgs/applications/terminal-emulators/stupidterm/default.nix index 554d210fbde..279af55254e 100644 --- a/pkgs/applications/terminal-emulators/stupidterm/default.nix +++ b/pkgs/applications/terminal-emulators/stupidterm/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, pkg-config, vte, gtk, pcre2 }: +{ lib, stdenv, fetchFromGitHub, pkg-config, vte, gtk, pcre2, nixosTests }: stdenv.mkDerivation { pname = "stupidterm"; @@ -26,6 +26,8 @@ stdenv.mkDerivation { --replace "Exec=st" "Exec=$out/bin/stupidterm" ''; + passthru.tests.test = nixosTests.terminal-emulators.stupidterm; + meta = with lib; { description = "Simple wrapper around the VTE terminal emulator widget for GTK"; homepage = "https://github.com/esmil/stupidterm"; diff --git a/pkgs/applications/terminal-emulators/terminator/default.nix b/pkgs/applications/terminal-emulators/terminator/default.nix index 67c7196e24d..04d4af0ccaf 100644 --- a/pkgs/applications/terminal-emulators/terminator/default.nix +++ b/pkgs/applications/terminal-emulators/terminator/default.nix @@ -9,6 +9,7 @@ , libnotify , wrapGAppsHook , vte +, nixosTests }: python3.pkgs.buildPythonApplication rec { @@ -62,6 +63,8 @@ python3.pkgs.buildPythonApplication rec { makeWrapperArgs+=("''${gappsWrapperArgs[@]}") ''; + passthru.tests.test = nixosTests.terminal-emulators.terminator; + meta = with lib; { description = "Terminal emulator with support for tiling and tabs"; longDescription = '' diff --git a/pkgs/applications/terminal-emulators/termite/default.nix b/pkgs/applications/terminal-emulators/termite/default.nix index 96fd3409dc7..2b05ecdc722 100644 --- a/pkgs/applications/terminal-emulators/termite/default.nix +++ b/pkgs/applications/terminal-emulators/termite/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchFromGitHub, fetchpatch, pkg-config, vte, gtk3, ncurses, pcre2, wrapGAppsHook }: +{ lib, stdenv, fetchFromGitHub, fetchpatch, pkg-config, vte, gtk3, ncurses, pcre2, wrapGAppsHook, nixosTests }: let @@ -57,7 +57,10 @@ in stdenv.mkDerivation rec { outputs = [ "out" "terminfo" ]; - passthru = { inherit vte-ng; }; + passthru = { + inherit vte-ng; + tests = nixosTests.terminal-emulators.termite; + }; postInstall = '' mkdir -p $terminfo/share diff --git a/pkgs/applications/terminal-emulators/termonad/default.nix b/pkgs/applications/terminal-emulators/termonad/default.nix index 6a1dd0bec39..111d790c695 100644 --- a/pkgs/applications/terminal-emulators/termonad/default.nix +++ b/pkgs/applications/terminal-emulators/termonad/default.nix @@ -1,4 +1,4 @@ -{ stdenv, haskellPackages, makeWrapper, packages ? (pkgSet: []) }: +{ stdenv, haskellPackages, makeWrapper, packages ? (pkgSet: []), nixosTests }: let termonadEnv = haskellPackages.ghcWithPackages (self: [ self.termonad ] ++ packages self); @@ -17,6 +17,8 @@ in stdenv.mkDerivation { preferLocalBuild = true; allowSubstitutes = false; + passthru.tests.test = nixosTests.terminal-emulators.termonad; + meta = haskellPackages.termonad.meta // { mainProgram = "termonad"; }; diff --git a/pkgs/applications/terminal-emulators/tilda/default.nix b/pkgs/applications/terminal-emulators/tilda/default.nix index 1ea50cfff7a..01cc4f527a9 100644 --- a/pkgs/applications/terminal-emulators/tilda/default.nix +++ b/pkgs/applications/terminal-emulators/tilda/default.nix @@ -9,6 +9,7 @@ , pcre2 , vte , makeWrapper +, nixosTests }: stdenv.mkDerivation rec { @@ -42,6 +43,8 @@ stdenv.mkDerivation rec { --prefix XDG_DATA_DIRS : "$GSETTINGS_SCHEMAS_PATH" ''; + passthru.tests.test = nixosTests.terminal-emulators.tilda; + meta = with lib; { description = "A Gtk based drop down terminal for Linux and Unix"; homepage = "https://github.com/lanoxx/tilda/"; diff --git a/pkgs/applications/terminal-emulators/tilix/default.nix b/pkgs/applications/terminal-emulators/tilix/default.nix index 0538a2060ae..917b179490c 100644 --- a/pkgs/applications/terminal-emulators/tilix/default.nix +++ b/pkgs/applications/terminal-emulators/tilix/default.nix @@ -17,6 +17,7 @@ , wrapGAppsHook , libunwind , appstream +, nixosTests }: stdenv.mkDerivation rec { @@ -66,6 +67,8 @@ stdenv.mkDerivation rec { --replace "Exec=tilix" "Exec=$out/bin/tilix" ''; + passthru.tests.test = nixosTests.terminal-emulators.tilix; + meta = with lib; { description = "Tiling terminal emulator following the Gnome Human Interface Guidelines"; homepage = "https://gnunn1.github.io/tilix-web"; diff --git a/pkgs/applications/terminal-emulators/wayst/default.nix b/pkgs/applications/terminal-emulators/wayst/default.nix index f3751e39881..eeb258f48c4 100644 --- a/pkgs/applications/terminal-emulators/wayst/default.nix +++ b/pkgs/applications/terminal-emulators/wayst/default.nix @@ -2,6 +2,7 @@ , lib , fetchFromGitHub , pkg-config +, nixosTests , freetype , fontconfig , libGL @@ -78,6 +79,8 @@ stdenv.mkDerivation rec { install -D icons/wayst.svg $out/share/icons/hicolor/scalable/apps/wayst.svg ''; + passthru.tests.test = nixosTests.terminal-emulators.wayst; + meta = with lib; { description = "A simple terminal emulator"; mainProgram = "wayst"; diff --git a/pkgs/applications/terminal-emulators/wezterm/default.nix b/pkgs/applications/terminal-emulators/wezterm/default.nix index fc12b1addf6..6d1276035c1 100644 --- a/pkgs/applications/terminal-emulators/wezterm/default.nix +++ b/pkgs/applications/terminal-emulators/wezterm/default.nix @@ -22,11 +22,12 @@ , Cocoa , Foundation , libiconv +, nixosTests }: rustPlatform.buildRustPackage rec { pname = "wezterm"; - version = "20220101-133340-7edc5b5a"; + version = "20220319-142410-0fcdea07"; outputs = [ "out" "terminfo" ]; @@ -35,7 +36,7 @@ rustPlatform.buildRustPackage rec { repo = pname; rev = version; fetchSubmodules = true; - sha256 = "sha256-UZCvKbZdZ7K4RtvVLmr44M612tqd4rkrjF2tys0JHNM="; + sha256 = "sha256-KmIlfzSbVY003WesodN5srJ7qEQaU93izmrZW1MobCo="; }; postPatch = '' @@ -45,7 +46,7 @@ rustPlatform.buildRustPackage rec { rm -r wezterm-ssh/tests ''; - cargoSha256 = "1imil15n9mf1r71qdp4cb4q7kzrrc2cspml0d54825yqaq8vjhsc"; + cargoSha256 = "sha256-+Iu6/pd14O1QIsLkHe7fTP30XyI+8J0GiRY8cnRPS5I="; nativeBuildInputs = [ pkg-config @@ -99,6 +100,8 @@ rustPlatform.buildRustPackage rec { ln -s $out/bin/{wezterm,wezterm-mux-server,wezterm-gui,strip-ansi-escapes} "$OUT_APP" ''; + passthru.tests.test = nixosTests.terminal-emulators.wezterm; + meta = with lib; { description = "A GPU-accelerated cross-platform terminal emulator and multiplexer written by @wez and implemented in Rust"; homepage = "https://wezfurlong.org/wezterm"; diff --git a/pkgs/applications/terminal-emulators/xterm/default.nix b/pkgs/applications/terminal-emulators/xterm/default.nix index 0f9bc33a907..278332ca6a3 100644 --- a/pkgs/applications/terminal-emulators/xterm/default.nix +++ b/pkgs/applications/terminal-emulators/xterm/default.nix @@ -4,14 +4,14 @@ stdenv.mkDerivation rec { pname = "xterm"; - version = "371"; + version = "372"; src = fetchurl { urls = [ "ftp://ftp.invisible-island.net/xterm/${pname}-${version}.tgz" "https://invisible-mirror.net/archives/xterm/${pname}-${version}.tgz" ]; - sha256 = "MviIJ3sZ4o68CjESv/AAYHwHvtBnnKoL7rs2+crUhPU="; + sha256 = "xtCBJ8skCcOgS8rlWbcCUZbtdwu3vyZjCry0XZX2CrE="; }; strictDeps = true; @@ -76,7 +76,10 @@ stdenv.mkDerivation rec { ''; passthru = { - tests = { inherit (nixosTests) xterm; }; + tests = { + customTest = nixosTests.xterm; + standardTest = nixosTests.terminal-emulators.xterm; + }; updateScript = let # Tags that end in letters are unstable diff --git a/pkgs/applications/version-management/git-and-tools/gh/default.nix b/pkgs/applications/version-management/git-and-tools/gh/default.nix index 5d96929282f..36b813f547e 100644 --- a/pkgs/applications/version-management/git-and-tools/gh/default.nix +++ b/pkgs/applications/version-management/git-and-tools/gh/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "gh"; - version = "2.5.2"; + version = "2.6.0"; src = fetchFromGitHub { owner = "cli"; repo = "cli"; rev = "v${version}"; - sha256 = "sha256-60XEc0V8stbl+JozTqu8yO37K1NXX/X2xFkcO9p/QNY="; + sha256 = "sha256-NvVm/deO4LSIl5TSziqsrGt9atCXjt4UZ/VJfmX3i4c="; }; - vendorSha256 = "sha256-aMD4a+jwCINcHV/z5UyTF+o3BzN9wviz+kLwDys9/BI="; + vendorSha256 = "sha256-pBjg6WyD61+Bl3ttcpl/b9XoWBCi7cDvE8NPaZGu7Aw="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/applications/version-management/gitea/default.nix b/pkgs/applications/version-management/gitea/default.nix index 37000982d8e..f08c88ab2fa 100644 --- a/pkgs/applications/version-management/gitea/default.nix +++ b/pkgs/applications/version-management/gitea/default.nix @@ -16,12 +16,12 @@ with lib; buildGoPackage rec { pname = "gitea"; - version = "1.16.3"; + version = "1.16.4"; # not fetching directly from the git repo, because that lacks several vendor files for the web UI src = fetchurl { url = "https://github.com/go-gitea/gitea/releases/download/v${version}/gitea-src-${version}.tar.gz"; - sha256 = "sha256-kT87CV/P1MUBLRetzYdIsIGVDjp9F6zmD2ovmcmy4Ys="; + sha256 = "sha256-7zlreX05pkhn381FMgQ8Nj3OP+BUr6o3u5f4ouo/Khg="; }; unpackPhase = '' diff --git a/pkgs/applications/version-management/gitlab/data.json b/pkgs/applications/version-management/gitlab/data.json index 462ff47afd7..73f84f7e9ef 100644 --- a/pkgs/applications/version-management/gitlab/data.json +++ b/pkgs/applications/version-management/gitlab/data.json @@ -1,14 +1,14 @@ { - "version": "14.8.2", - "repo_hash": "1pl528qxsbg75l5nny7cw8hcsd0zs50hhn0ngdrf3gjpd6y7pzcc", - "yarn_hash": "0dlhslkhiha4jyfzm0k8i9cgwdk12r5m67i2rznxbrkl38gk9c1x", + "version": "14.8.4", + "repo_hash": "0ra4d324all26crz84iys9xb40ykpiaqj4z2790zaw1s45wakmgj", + "yarn_hash": "106js1j6wii2axh1dxvlfr7mqhvsnsb5qs0danp9c3h1ihd4nz91", "owner": "gitlab-org", "repo": "gitlab", - "rev": "v14.8.2-ee", + "rev": "v14.8.4-ee", "passthru": { - "GITALY_SERVER_VERSION": "14.8.2", + "GITALY_SERVER_VERSION": "14.8.4", "GITLAB_PAGES_VERSION": "1.54.0", "GITLAB_SHELL_VERSION": "13.23.2", - "GITLAB_WORKHORSE_VERSION": "14.8.2" + "GITLAB_WORKHORSE_VERSION": "14.8.4" } } diff --git a/pkgs/applications/version-management/gitlab/gitaly/default.nix b/pkgs/applications/version-management/gitlab/gitaly/default.nix index b5a05dde1b4..877e0ace9fa 100644 --- a/pkgs/applications/version-management/gitlab/gitaly/default.nix +++ b/pkgs/applications/version-management/gitlab/gitaly/default.nix @@ -11,7 +11,7 @@ let gemdir = ./.; }; - version = "14.8.2"; + version = "14.8.4"; gitaly_package = "gitlab.com/gitlab-org/gitaly/v${lib.versions.major version}"; in @@ -23,7 +23,7 @@ buildGoModule { owner = "gitlab-org"; repo = "gitaly"; rev = "v${version}"; - sha256 = "sha256-GgQscKxxYpvzU2M99gmvGj0HM/oD+2Ke24FRzUxv6HM="; + sha256 = "sha256-3doXqYj1XsOifAr78ds5ioa6gUfw8uyUwn7JzqlMVSE="; }; vendorSha256 = "sha256-Qw9/nlo1eB5dPcldXe9doy4QA4DDVUDad3o4kbdNu34="; diff --git a/pkgs/applications/version-management/gitlab/gitlab-workhorse/default.nix b/pkgs/applications/version-management/gitlab/gitlab-workhorse/default.nix index 76273acdff2..3533bccea98 100644 --- a/pkgs/applications/version-management/gitlab/gitlab-workhorse/default.nix +++ b/pkgs/applications/version-management/gitlab/gitlab-workhorse/default.nix @@ -5,7 +5,7 @@ in buildGoModule rec { pname = "gitlab-workhorse"; - version = "14.8.2"; + version = "14.8.4"; src = fetchFromGitLab { owner = data.owner; diff --git a/pkgs/applications/version-management/gogs/default.nix b/pkgs/applications/version-management/gogs/default.nix index 3f9d8442ea4..cf0622a6b0e 100644 --- a/pkgs/applications/version-management/gogs/default.nix +++ b/pkgs/applications/version-management/gogs/default.nix @@ -8,13 +8,13 @@ with lib; buildGoModule rec { pname = "gogs"; - version = "0.12.4"; + version = "0.12.5"; src = fetchFromGitHub { owner = "gogs"; repo = "gogs"; rev = "v${version}"; - sha256 = "sha256-t2aXRYCr54sqXwv6cJHDf1z1z94SqJM0WQRd2ejc7XY="; + sha256 = "sha256-I3kFRKgVMGMKgHU5VEeNai8FseN/ea6MzEP94AR2Zfo="; }; vendorSha256 = "sha256-3dT5D+oDd0mpJp/cP53TQcRUkmqh6g3sRBWWAUqhaAo="; diff --git a/pkgs/applications/version-management/meld/default.nix b/pkgs/applications/version-management/meld/default.nix index bef284ea534..462744641e3 100644 --- a/pkgs/applications/version-management/meld/default.nix +++ b/pkgs/applications/version-management/meld/default.nix @@ -1,5 +1,6 @@ { lib , fetchurl +, fetchpatch , gettext , itstool , python3 @@ -27,6 +28,16 @@ python3.pkgs.buildPythonApplication rec { sha256 = "cP6Y65Ms4h1nFw47D2pzF+gT6GLemJM+pROYLpoDMgI="; }; + patches = [ + # Pull upstream fix for meson-0.60: + # https://gitlab.gnome.org/GNOME/meld/-/merge_requests/78 + (fetchpatch { + name = "meson-0.60.patch"; + url = "https://gitlab.gnome.org/GNOME/meld/-/commit/cc7746c141d976a4779cf868774fae1fe7627a6d.patch"; + sha256 = "sha256-4uJZyF00Z6svzrOebByZV1hutCZRkIQYC4rUxQr5fdQ="; + }) + ]; + nativeBuildInputs = [ meson ninja diff --git a/pkgs/applications/video/f1viewer/default.nix b/pkgs/applications/video/f1viewer/default.nix index 33e1863428e..7c091b425af 100644 --- a/pkgs/applications/video/f1viewer/default.nix +++ b/pkgs/applications/video/f1viewer/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "f1viewer"; - version = "2.5.0"; + version = "2.6.0"; src = fetchFromGitHub { owner = "SoMuchForSubtlety"; repo = pname; rev = "v${version}"; - sha256 = "sha256-cTXueIOD+OXx4WikhdNv3v/F2/f5aDicyPP7FgTU6AM="; + sha256 = "sha256-MY8xqpAzK1c4XL7w/LR83DyHFCI5X7wldosDDo7pXNI="; }; - vendorSha256 = "sha256-47uLx4t0N1T3zqZ9o/su/onJEUdGXpq+iVSUaRnwW3I="; + vendorSha256 = "sha256-8c1+t6Lo11Q2kEDy9IWLw9bsZYtJFksE7Om3ysx7fc4="; meta = with lib; { description = diff --git a/pkgs/applications/video/freetube/default.nix b/pkgs/applications/video/freetube/default.nix index 8b90704a535..c93be6b6383 100644 --- a/pkgs/applications/video/freetube/default.nix +++ b/pkgs/applications/video/freetube/default.nix @@ -23,11 +23,11 @@ stdenv.mkDerivation rec { installPhase = '' runHook preInstall - mkdir -p $out/bin $out/share/${pname} $out/share/applications + mkdir -p $out/bin $out/share/${pname} $out/share/applications $out/share/icons/hicolor/scalable/apps cp -a ${appimageContents}/{locales,resources} $out/share/${pname} cp -a ${appimageContents}/freetube.desktop $out/share/applications/${pname}.desktop - cp -a ${appimageContents}/usr/share/icons $out/share + cp -a ${appimageContents}/usr/share/icons/hicolor/scalable/freetube.svg $out/share/icons/hicolor/scalable/apps substituteInPlace $out/share/applications/${pname}.desktop \ --replace 'Exec=AppRun' 'Exec=${pname}' diff --git a/pkgs/applications/video/lbry/default.nix b/pkgs/applications/video/lbry/default.nix index 460b0a17668..ea69ea547df 100644 --- a/pkgs/applications/video/lbry/default.nix +++ b/pkgs/applications/video/lbry/default.nix @@ -2,7 +2,7 @@ let pname = "lbry-desktop"; - version = "0.52.4"; + version = "0.52.5"; in appimageTools.wrapAppImage rec { name = "${pname}-${version}"; @@ -12,7 +12,7 @@ in appimageTools.wrapAppImage rec { src = fetchurl { url = "https://github.com/lbryio/lbry-desktop/releases/download/v${version}/LBRY_${version}.AppImage"; # Gotten from latest-linux.yml - sha512 = "TWRFCVktSKs5PORtm8FvM6qNWuiL/1HN98ilr1busVUGvain0QXGZwB/Dzvsox1c+X9VofUdapzozSOT6r58qw=="; + sha512 = "i0t1Ygf3el7Brh6TA804V6n5r5UczvOPxAdhyJ7Gvvg9VqN1+QXB6hsqF4jYTW3jcKxvorVALwrFDVezBTPv5g=="; }; }; diff --git a/pkgs/applications/video/mkvtoolnix/default.nix b/pkgs/applications/video/mkvtoolnix/default.nix index 0928c7617f9..137731312b0 100644 --- a/pkgs/applications/video/mkvtoolnix/default.nix +++ b/pkgs/applications/video/mkvtoolnix/default.nix @@ -47,13 +47,13 @@ let in stdenv.mkDerivation rec { pname = "mkvtoolnix"; - version = "65.0.0"; + version = "66.0.0"; src = fetchFromGitLab { owner = "mbunkus"; repo = "mkvtoolnix"; rev = "release-${version}"; - sha256 = "1zphcpfrzic9ialx3xxi2ywzxnllys667vy140bgdshzr798sg2p"; + sha256 = "sha256-JTPayZhV3Z+o1v+TbHp9SGMAZk1oEzMdNhk67BYB75A="; }; nativeBuildInputs = [ diff --git a/pkgs/applications/video/mpv/scripts/vr-reversal.nix b/pkgs/applications/video/mpv/scripts/vr-reversal.nix new file mode 100644 index 00000000000..4c4aacef31d --- /dev/null +++ b/pkgs/applications/video/mpv/scripts/vr-reversal.nix @@ -0,0 +1,35 @@ +{ lib, stdenvNoCC, fetchFromGitHub, ffmpeg }: + +stdenvNoCC.mkDerivation rec { + pname = "vr-reversal"; + version = "1.1"; + + src = fetchFromGitHub { + owner = "dfaker"; + repo = pname; + rev = "v${version}"; + sha256 = "1wn2ngcvn7wcsl3kmj782x5q9130qw951lj6ilrkafp6q6zscpqr"; + }; + + dontBuild = true; + + # reset_rot is only available in ffmpeg 5.0, see 5bcc61ce87922ecccaaa0bd303a7e195929859a8 + postPatch = lib.optionalString (lib.versionOlder ffmpeg.version "5.0") '' + substituteInPlace 360plugin.lua --replace ":reset_rot=1:" ":" + ''; + + installPhase = '' + mkdir -p $out/share/mpv/scripts + cp -r 360plugin.lua $out/share/mpv/scripts/ + ''; + + passthru.scriptName = "360plugin.lua"; + + meta = with lib; { + description = "Script for mpv to play VR video with optional saving of head tracking data."; + homepage = "https://github.com/dfaker/VR-reversal"; + license = licenses.unlicense; + platforms = platforms.all; + maintainers = with maintainers; [ schnusch ]; + }; +} diff --git a/pkgs/applications/video/smplayer/default.nix b/pkgs/applications/video/smplayer/default.nix index 6d4e0f18d6f..eecb3a6b974 100644 --- a/pkgs/applications/video/smplayer/default.nix +++ b/pkgs/applications/video/smplayer/default.nix @@ -8,13 +8,13 @@ stdenv.mkDerivation rec { pname = "smplayer"; - version = "21.10.0"; + version = "22.2.0"; src = fetchFromGitHub { owner = "smplayer-dev"; repo = pname; rev = "v${version}"; - hash = "sha256-p6036c8KX3GCINmkjHZlDLgHhLKri+t2WNWzP4KsSI8="; + hash = "sha256-7DMvIqW3vzjVzJPyjbXuHHcf1T6EFcf/a/mVYqa3XS8="; }; nativeBuildInputs = [ @@ -22,7 +22,9 @@ stdenv.mkDerivation rec { wrapQtAppsHook ]; - buildInputs = [ qtscript ]; + buildInputs = [ + qtscript + ]; dontUseQmakeConfigure = true; diff --git a/pkgs/applications/virtualization/containerd/1.4.nix b/pkgs/applications/virtualization/containerd/1.4.nix deleted file mode 100644 index 92c7ab0b2fd..00000000000 --- a/pkgs/applications/virtualization/containerd/1.4.nix +++ /dev/null @@ -1,51 +0,0 @@ -{ lib -, fetchFromGitHub -, buildGoPackage -, btrfs-progs -, go-md2man -, installShellFiles -, util-linux -, nixosTests -}: - -buildGoPackage rec { - pname = "containerd"; - version = "1.4.11"; - - src = fetchFromGitHub { - owner = "containerd"; - repo = "containerd"; - rev = "v${version}"; - sha256 = "sha256-mUagr1/LqTCFvshWuiSMxsqdRqjzogt2tZ0uwR7ZVAs="; - }; - - goPackagePath = "github.com/containerd/containerd"; - outputs = [ "out" "man" ]; - - nativeBuildInputs = [ go-md2man installShellFiles util-linux ]; - - buildInputs = [ btrfs-progs ]; - - buildPhase = '' - cd go/src/${goPackagePath} - patchShebangs . - make binaries man "VERSION=v${version}" "REVISION=${src.rev}" - ''; - - installPhase = '' - install -Dm555 bin/* -t $out/bin - installManPage man/*.[1-9] - installShellCompletion --bash contrib/autocomplete/ctr - installShellCompletion --zsh --name _ctr contrib/autocomplete/zsh_autocomplete - ''; - - passthru.tests = { inherit (nixosTests) docker; }; - - meta = with lib; { - homepage = "https://containerd.io/"; - description = "A daemon to control runC"; - license = licenses.asl20; - maintainers = with maintainers; [ ]; - platforms = platforms.linux; - }; -} diff --git a/pkgs/applications/virtualization/cri-o/default.nix b/pkgs/applications/virtualization/cri-o/default.nix index 87b91196f88..b6d238d599e 100644 --- a/pkgs/applications/virtualization/cri-o/default.nix +++ b/pkgs/applications/virtualization/cri-o/default.nix @@ -15,13 +15,13 @@ buildGoModule rec { pname = "cri-o"; - version = "1.23.1"; + version = "1.23.2"; src = fetchFromGitHub { owner = "cri-o"; repo = "cri-o"; rev = "v${version}"; - sha256 = "sha256-A59Bgt0u8jzpTijT5vcO8JREL7Elx1mWnwddAuRHn5c="; + sha256 = "sha256-sjeYWBcal6RtoUZd6orQ+237Fz80vQKx5vocFMq4l7U="; }; vendorSha256 = null; diff --git a/pkgs/applications/virtualization/docker/default.nix b/pkgs/applications/virtualization/docker/default.nix index 462ebb556f1..87bb16ab833 100644 --- a/pkgs/applications/virtualization/docker/default.nix +++ b/pkgs/applications/virtualization/docker/default.nix @@ -10,9 +10,9 @@ rec { , containerdRev, containerdSha256 , tiniRev, tiniSha256, buildxSupport ? true, composeSupport ? true # package dependencies - , stdenv, fetchFromGitHub, buildGoPackage + , stdenv, fetchFromGitHub, fetchpatch, buildGoPackage , makeWrapper, installShellFiles, pkg-config, glibc - , go-md2man, go, containerd_1_4, runc, docker-proxy, tini, libtool + , go-md2man, go, containerd, runc, docker-proxy, tini, libtool , sqlite, iproute2, lvm2, systemd, docker-buildx, docker-compose_2 , btrfs-progs, iptables, e2fsprogs, xz, util-linux, xfsprogs, git , procps, libseccomp, rootlesskit, slirp4netns, fuse-overlayfs @@ -33,7 +33,7 @@ rec { patches = []; }); - docker-containerd = containerd_1_4.overrideAttrs (oldAttrs: { + docker-containerd = containerd.overrideAttrs (oldAttrs: { name = "docker-containerd-${version}"; inherit version; src = fetchFromGitHub { @@ -79,6 +79,16 @@ rec { extraUserPath = optionals (stdenv.isLinux && !clientOnly) (makeBinPath [ rootlesskit slirp4netns fuse-overlayfs ]); + patches = [ + # This patch incorporates code from a PR fixing using buildkit with the ZFS graph driver. + # It could be removed when a version incorporating this patch is released. + (fetchpatch { + name = "buildkit-zfs.patch"; + url = "https://github.com/moby/moby/pull/43136.patch"; + sha256 = "1WZfpVnnqFwLMYqaHLploOodls0gHF8OCp7MrM26iX8="; + }) + ]; + postPatch = '' patchShebangs hack/make.sh hack/make/ ''; @@ -233,20 +243,20 @@ rec { # Get revisions from # https://github.com/moby/moby/tree/${version}/hack/dockerfile/install/* docker_20_10 = callPackage dockerGen rec { - version = "20.10.12"; + version = "20.10.13"; rev = "v${version}"; - sha256 = "sha256-nU6grb2lSW7BY7w9aAXwVbGp9TyO2ZxnJaxAi0wbk/c="; + sha256 = "sha256-eDwgqFx4io++SMOjhxMxVzqzcOgOnv6Xe/qmmPCvZts="; moby-src = fetchFromGitHub { owner = "moby"; repo = "moby"; rev = "v${version}"; - sha256 = "sha256-qizzK1qJNRGFisahE3iAzZTNW/HmledlMNxcJCMQSJ4="; + sha256 = "sha256-ajceIdMM8yAa+bvTjRwZ/zF7yTLF2LhGmbrweWni7hM="; }; - runcRev = "v1.0.2"; - runcSha256 = "1bpckghjah0rczciw1a1ab8z718lb2d3k4mjm4zb45lpm3njmrcp"; - containerdRev = "v1.4.12"; - containerdSha256 = "sha256-g30kshXyGVew5tVaXFAOQUOYvvo0JBqIj1YaC5nTiS8="; - tiniRev = "v0.19.0"; # v0.19.0 - tiniSha256 = "1h20i3wwlbd8x4jr2gz68hgklh0lb0jj7y5xk1wvr8y58fip1rdn"; + runcRev = "v1.0.3"; + runcSha256 = "sha256-Tl/JKbIpao+FCjngPzaVkxse50zo3XQ9Mg/AdkblMcI="; + containerdRev = "v1.5.10"; + containerdSha256 = "sha256-ee0dwWSGedo08omKOmZtW5qQ1J5M9Mm+kZHq7a+zyT4="; + tiniRev = "v0.19.0"; + tiniSha256 = "sha256-ZDKu/8yE5G0RYFJdhgmCdN3obJNyRWv6K/Gd17zc1sI="; }; } diff --git a/pkgs/applications/virtualization/lima/default.nix b/pkgs/applications/virtualization/lima/default.nix index 7feea9b4a34..68e902253ed 100644 --- a/pkgs/applications/virtualization/lima/default.nix +++ b/pkgs/applications/virtualization/lima/default.nix @@ -8,16 +8,16 @@ buildGoModule rec { pname = "lima"; - version = "0.9.0"; + version = "0.9.1"; src = fetchFromGitHub { owner = "lima-vm"; repo = pname; rev = "v${version}"; - sha256 = "sha256-jbWz4HVYR3OEze2fFgG6Tg4p50IL0NStmaa8+GUPkNw="; + sha256 = "sha256-Y15oYAdq+bsG2qD/ZTqXHgkelAdQF4SnOE79gDhlNGE="; }; - vendorSha256 = "sha256-RX8HfeDVvLUX4Ez2ma04gTl+8+lM7WGNSpmFNnf+5Xs="; + vendorSha256 = "sha256-66CcLWG45vZwM2LVc1xsjJYyxefGEBW4fY3wo1ESQUM="; nativeBuildInputs = [ makeWrapper installShellFiles ]; diff --git a/pkgs/applications/window-managers/i3/status-rust.nix b/pkgs/applications/window-managers/i3/status-rust.nix index cdcfcca15ea..ed518d8eb2e 100644 --- a/pkgs/applications/window-managers/i3/status-rust.nix +++ b/pkgs/applications/window-managers/i3/status-rust.nix @@ -15,16 +15,16 @@ rustPlatform.buildRustPackage rec { pname = "i3status-rust"; - version = "0.21.6"; + version = "0.21.8"; src = fetchFromGitHub { owner = "greshake"; repo = pname; rev = "v${version}"; - sha256 = "sha256-2PBGw5LHIOOPXBZ+12wL2ZGH+gfbkXNIItpE6SLT8so="; + sha256 = "sha256-l0XfitQSmSkivEg8+XcA/+bWdy/wzIpii/Npc4p8kUw="; }; - cargoSha256 = "sha256-wtxfdQw5zKCxYu7N2BpcLVTlitQmwY7s8oO4dpK8MjE="; + cargoSha256 = "sha256-2rJ9ZZHK1acJu6r6EjuoolLJZMdBsbKgN1DNvGM7deA="; nativeBuildInputs = [ pkg-config makeWrapper ]; diff --git a/pkgs/build-support/alternatives/blas/default.nix b/pkgs/build-support/alternatives/blas/default.nix index 8917784bc6c..7186675a5c6 100644 --- a/pkgs/build-support/alternatives/blas/default.nix +++ b/pkgs/build-support/alternatives/blas/default.nix @@ -1,7 +1,7 @@ { lib, stdenv -, lapack-reference, openblasCompat, openblas +, lapack-reference, openblas , isILP64 ? false -, blasProvider ? if isILP64 then openblas else openblasCompat }: +, blasProvider ? openblas }: let blasFortranSymbols = [ @@ -32,10 +32,13 @@ let blasImplementation = lib.getName blasProvider; + blasProvider' = if blasImplementation == "mkl" + then blasProvider + else blasProvider.override { blas64 = isILP64; }; in -assert isILP64 -> (blasImplementation == "openblas" && blasProvider.blas64) || blasImplementation == "mkl"; +assert isILP64 -> blasImplementation == "mkl" || blasProvider'.blas64; stdenv.mkDerivation { pname = "blas"; @@ -43,13 +46,13 @@ stdenv.mkDerivation { outputs = [ "out" "dev" ]; - meta = (blasProvider.meta or {}) // { + meta = (blasProvider'.meta or {}) // { description = "${lib.getName blasProvider} with just the BLAS C and FORTRAN ABI"; }; passthru = { inherit isILP64; - provider = blasProvider; + provider = blasProvider'; implementation = blasImplementation; }; @@ -62,10 +65,10 @@ stdenv.mkDerivation { installPhase = ('' mkdir -p $out/lib $dev/include $dev/lib/pkgconfig - libblas="${lib.getLib blasProvider}/lib/libblas${canonicalExtension}" + libblas="${lib.getLib blasProvider'}/lib/libblas${canonicalExtension}" if ! [ -e "$libblas" ]; then - echo "$libblas does not exist, ${blasProvider.name} does not provide libblas." + echo "$libblas does not exist, ${blasProvider'.name} does not provide libblas." exit 1 fi @@ -79,11 +82,11 @@ stdenv.mkDerivation { '' + (if stdenv.hostPlatform.parsed.kernel.execFormat.name == "elf" then '' patchelf --set-soname libblas${canonicalExtension} $out/lib/libblas${canonicalExtension} - patchelf --set-rpath "$(patchelf --print-rpath $out/lib/libblas${canonicalExtension}):${lib.getLib blasProvider}/lib" $out/lib/libblas${canonicalExtension} + patchelf --set-rpath "$(patchelf --print-rpath $out/lib/libblas${canonicalExtension}):${lib.getLib blasProvider'}/lib" $out/lib/libblas${canonicalExtension} '' else if stdenv.hostPlatform.isDarwin then '' install_name_tool \ -id $out/lib/libblas${canonicalExtension} \ - -add_rpath ${lib.getLib blasProvider}/lib \ + -add_rpath ${lib.getLib blasProvider'}/lib \ $out/lib/libblas${canonicalExtension} '' else "") + '' @@ -99,10 +102,10 @@ Libs: -L$out/lib -lblas Cflags: -I$dev/include EOF - libcblas="${lib.getLib blasProvider}/lib/libcblas${canonicalExtension}" + libcblas="${lib.getLib blasProvider'}/lib/libcblas${canonicalExtension}" if ! [ -e "$libcblas" ]; then - echo "$libcblas does not exist, ${blasProvider.name} does not provide libcblas." + echo "$libcblas does not exist, ${blasProvider'.name} does not provide libcblas." exit 1 fi @@ -111,11 +114,11 @@ EOF '' + (if stdenv.hostPlatform.parsed.kernel.execFormat.name == "elf" then '' patchelf --set-soname libcblas${canonicalExtension} $out/lib/libcblas${canonicalExtension} - patchelf --set-rpath "$(patchelf --print-rpath $out/lib/libcblas${canonicalExtension}):${lib.getLib blasProvider}/lib" $out/lib/libcblas${canonicalExtension} + patchelf --set-rpath "$(patchelf --print-rpath $out/lib/libcblas${canonicalExtension}):${lib.getLib blasProvider'}/lib" $out/lib/libcblas${canonicalExtension} '' else if stdenv.hostPlatform.isDarwin then '' install_name_tool \ -id $out/lib/libcblas${canonicalExtension} \ - -add_rpath ${lib.getLib blasProvider}/lib \ + -add_rpath ${lib.getLib blasProvider'}/lib \ $out/lib/libcblas${canonicalExtension} '' else "") + '' if [ "$out/lib/libcblas${canonicalExtension}" != "$out/lib/libcblas${stdenv.hostPlatform.extensions.sharedLibrary}" ]; then @@ -135,6 +138,6 @@ EOF mkdir -p $out/nix-support echo 'export MKL_INTERFACE_LAYER=${lib.optionalString isILP64 "I"}LP64,GNU' > $out/nix-support/setup-hook ln -s $out/lib/libblas${canonicalExtension} $out/lib/libmkl_rt${stdenv.hostPlatform.extensions.sharedLibrary} - ln -sf ${blasProvider}/include/* $dev/include + ln -sf ${blasProvider'}/include/* $dev/include ''); } diff --git a/pkgs/build-support/alternatives/lapack/default.nix b/pkgs/build-support/alternatives/lapack/default.nix index 61da183c835..80fb7be8c1e 100644 --- a/pkgs/build-support/alternatives/lapack/default.nix +++ b/pkgs/build-support/alternatives/lapack/default.nix @@ -1,7 +1,7 @@ { lib, stdenv -, lapack-reference, openblasCompat, openblas +, lapack-reference, openblas , isILP64 ? false -, lapackProvider ? if isILP64 then openblas else openblasCompat }: +, lapackProvider ? openblas }: let @@ -11,10 +11,13 @@ let else stdenv.hostPlatform.extensions.sharedLibrary; lapackImplementation = lib.getName lapackProvider; + lapackProvider' = if lapackImplementation == "mkl" + then lapackProvider + else lapackProvider.override { blas64 = isILP64; }; in -assert isILP64 -> (lapackImplementation == "openblas" && lapackProvider.blas64) || lapackImplementation == "mkl"; +assert isILP64 -> lapackImplementation == "mkl" || lapackProvider'.blas64; stdenv.mkDerivation { pname = "lapack"; @@ -22,13 +25,13 @@ stdenv.mkDerivation { outputs = [ "out" "dev" ]; - meta = (lapackProvider.meta or {}) // { - description = "${lib.getName lapackProvider} with just the LAPACK C and FORTRAN ABI"; + meta = (lapackProvider'.meta or {}) // { + description = "${lib.getName lapackProvider'} with just the LAPACK C and FORTRAN ABI"; }; passthru = { inherit isILP64; - provider = lapackProvider; + provider = lapackProvider'; implementation = lapackImplementation; }; @@ -41,10 +44,10 @@ stdenv.mkDerivation { installPhase = ('' mkdir -p $out/lib $dev/include $dev/lib/pkgconfig - liblapack="${lib.getLib lapackProvider}/lib/liblapack${canonicalExtension}" + liblapack="${lib.getLib lapackProvider'}/lib/liblapack${canonicalExtension}" if ! [ -e "$liblapack" ]; then - echo "$liblapack does not exist, ${lapackProvider.name} does not provide liblapack." + echo "$liblapack does not exist, ${lapackProvider'.name} does not provide liblapack." exit 1 fi @@ -53,7 +56,7 @@ stdenv.mkDerivation { '' + (if stdenv.hostPlatform.parsed.kernel.execFormat.name == "elf" then '' patchelf --set-soname liblapack${canonicalExtension} $out/lib/liblapack${canonicalExtension} - patchelf --set-rpath "$(patchelf --print-rpath $out/lib/liblapack${canonicalExtension}):${lapackProvider}/lib" $out/lib/liblapack${canonicalExtension} + patchelf --set-rpath "$(patchelf --print-rpath $out/lib/liblapack${canonicalExtension}):${lapackProvider'}/lib" $out/lib/liblapack${canonicalExtension} '' else "") + '' if [ "$out/lib/liblapack${canonicalExtension}" != "$out/lib/liblapack${stdenv.hostPlatform.extensions.sharedLibrary}" ]; then @@ -70,10 +73,10 @@ Cflags: -I$dev/include Libs: -L$out/lib -llapack EOF - liblapacke="${lib.getLib lapackProvider}/lib/liblapacke${canonicalExtension}" + liblapacke="${lib.getLib lapackProvider'}/lib/liblapacke${canonicalExtension}" if ! [ -e "$liblapacke" ]; then - echo "$liblapacke does not exist, ${lapackProvider.name} does not provide liblapacke." + echo "$liblapacke does not exist, ${lapackProvider'.name} does not provide liblapacke." exit 1 fi @@ -82,7 +85,7 @@ EOF '' + (if stdenv.hostPlatform.parsed.kernel.execFormat.name == "elf" then '' patchelf --set-soname liblapacke${canonicalExtension} $out/lib/liblapacke${canonicalExtension} - patchelf --set-rpath "$(patchelf --print-rpath $out/lib/liblapacke${canonicalExtension}):${lib.getLib lapackProvider}/lib" $out/lib/liblapacke${canonicalExtension} + patchelf --set-rpath "$(patchelf --print-rpath $out/lib/liblapacke${canonicalExtension}):${lib.getLib lapackProvider'}/lib" $out/lib/liblapacke${canonicalExtension} '' else "") + '' if [ -f "$out/lib/liblapacke.so.3" ]; then @@ -102,6 +105,6 @@ EOF mkdir -p $out/nix-support echo 'export MKL_INTERFACE_LAYER=${lib.optionalString isILP64 "I"}LP64,GNU' > $out/nix-support/setup-hook ln -s $out/lib/liblapack${canonicalExtension} $out/lib/libmkl_rt${stdenv.hostPlatform.extensions.sharedLibrary} - ln -sf ${lapackProvider}/include/* $dev/include + ln -sf ${lapackProvider'}/include/* $dev/include ''); } diff --git a/pkgs/build-support/cc-wrapper/add-flags.sh b/pkgs/build-support/cc-wrapper/add-flags.sh index a6e991914e6..c59118d6c09 100644 --- a/pkgs/build-support/cc-wrapper/add-flags.sh +++ b/pkgs/build-support/cc-wrapper/add-flags.sh @@ -33,6 +33,20 @@ NIX_CFLAGS_COMPILE_@suffixSalt@="-B@out@/bin/ $NIX_CFLAGS_COMPILE_@suffixSalt@" # Export and assign separately in order that a failing $(..) will fail # the script. +# Currently bootstrap-tools does not split glibc, and gcc files into +# separate directories. As a workaround we want resulting cflags to be +# ordered as: crt1-cflags libc-cflags cc-cflags. Otherwise we mix crt/libc.so +# from different libc as seen in +# https://github.com/NixOS/nixpkgs/issues/158042 +# +# Note that below has reverse ordering as we prepend flags one-by-one. +# Once bootstrap-tools is split into different directories we can stop +# relying on flag ordering below. + +if [ -e @out@/nix-support/cc-cflags ]; then + NIX_CFLAGS_COMPILE_@suffixSalt@="$(< @out@/nix-support/cc-cflags) $NIX_CFLAGS_COMPILE_@suffixSalt@" +fi + if [[ "$cInclude" = 1 ]] && [ -e @out@/nix-support/libc-cflags ]; then NIX_CFLAGS_COMPILE_@suffixSalt@="$(< @out@/nix-support/libc-cflags) $NIX_CFLAGS_COMPILE_@suffixSalt@" fi @@ -49,10 +63,6 @@ if [ -e @out@/nix-support/libcxx-ldflags ]; then NIX_CXXSTDLIB_LINK_@suffixSalt@+=" $(< @out@/nix-support/libcxx-ldflags)" fi -if [ -e @out@/nix-support/cc-cflags ]; then - NIX_CFLAGS_COMPILE_@suffixSalt@="$(< @out@/nix-support/cc-cflags) $NIX_CFLAGS_COMPILE_@suffixSalt@" -fi - if [ -e @out@/nix-support/gnat-cflags ]; then NIX_GNATFLAGS_COMPILE_@suffixSalt@="$(< @out@/nix-support/gnat-cflags) $NIX_GNATFLAGS_COMPILE_@suffixSalt@" fi diff --git a/pkgs/build-support/fetchpatch/default.nix b/pkgs/build-support/fetchpatch/default.nix index 740baa8cff5..6e25b2d6ecc 100644 --- a/pkgs/build-support/fetchpatch/default.nix +++ b/pkgs/build-support/fetchpatch/default.nix @@ -54,9 +54,9 @@ fetchurl ({ "$tmpfile" > "$out" if [ ! -s "$out" ]; then - echo "error: Filtered patch '$out$' is empty (while the original patch file was not)!" 1>&2 + echo "error: Filtered patch '$out' is empty (while the original patch file was not)!" 1>&2 echo "Check your includes and excludes." 1>&2 - echo "Normalizd patch file was:" 1>&2 + echo "Normalized patch file was:" 1>&2 cat "$tmpfile" 1>&2 exit 1 fi diff --git a/pkgs/build-support/rust/import-cargo-lock.nix b/pkgs/build-support/rust/import-cargo-lock.nix index fd3608741ea..e571c01f95c 100644 --- a/pkgs/build-support/rust/import-cargo-lock.nix +++ b/pkgs/build-support/rust/import-cargo-lock.nix @@ -128,8 +128,13 @@ let # If the target package is in a workspace, or if it's the top-level # crate, we should find the crate path using `cargo metadata`. - crateCargoTOML=$(${cargo}/bin/cargo metadata --format-version 1 --no-deps --manifest-path $tree/Cargo.toml | \ + # Some packages do not have a Cargo.toml at the top-level, + # but only in nested directories. + # Only check the top-level Cargo.toml, if it actually exists + if [[ -f $tree/Cargo.toml ]]; then + crateCargoTOML=$(${cargo}/bin/cargo metadata --format-version 1 --no-deps --manifest-path $tree/Cargo.toml | \ ${jq}/bin/jq -r '.packages[] | select(.name == "${pkg.name}") | .manifest_path') + fi # If the repository is not a workspace the package might be in a subdirectory. if [[ -z $crateCargoTOML ]]; then diff --git a/pkgs/build-support/setup-hooks/auto-patchelf.py b/pkgs/build-support/setup-hooks/auto-patchelf.py new file mode 100644 index 00000000000..26fd623e3da --- /dev/null +++ b/pkgs/build-support/setup-hooks/auto-patchelf.py @@ -0,0 +1,329 @@ +#!/usr/bin/env python3 + +from collections import defaultdict +from contextlib import contextmanager +from dataclasses import dataclass +from elftools.common.exceptions import ELFError # type: ignore +from elftools.elf.dynamic import DynamicSection # type: ignore +from elftools.elf.elffile import ELFFile # type: ignore +from elftools.elf.enums import ENUM_E_TYPE, ENUM_EI_OSABI # type: ignore +from itertools import chain +from pathlib import Path, PurePath + +from typing import Tuple, Optional, Iterator, List, DefaultDict, Set + +import argparse +import os +import pprint +import subprocess +import sys + + + +@contextmanager +def open_elf(path: Path) -> Iterator[ELFFile]: + with path.open('rb') as stream: + yield ELFFile(stream) + + +def is_static_executable(elf: ELFFile) -> bool: + # Statically linked executables have an ELF type of EXEC but no INTERP. + return (elf.header["e_type"] == 'ET_EXEC' + and not elf.get_section_by_name(".interp")) + + +def is_dynamic_executable(elf: ELFFile) -> bool: + # We do not require an ELF type of EXEC. This also catches + # position-independent executables, as they typically have an INTERP + # section but their ELF type is DYN. + return bool(elf.get_section_by_name(".interp")) + + +def get_dependencies(elf: ELFFile) -> List[str]: + dependencies = [] + # This convoluted code is here on purpose. For some reason, using + # elf.get_section_by_name(".dynamic") does not always return an + # instance of DynamicSection, but that is required to call iter_tags + for section in elf.iter_sections(): + if isinstance(section, DynamicSection): + for tag in section.iter_tags('DT_NEEDED'): + dependencies.append(tag.needed) + break # There is only one dynamic section + + return dependencies + + +def get_rpath(elf: ELFFile) -> List[str]: + # This convoluted code is here on purpose. For some reason, using + # elf.get_section_by_name(".dynamic") does not always return an + # instance of DynamicSection, but that is required to call iter_tags + for section in elf.iter_sections(): + if isinstance(section, DynamicSection): + for tag in section.iter_tags('DT_RUNPATH'): + return tag.runpath.split(':') + + for tag in section.iter_tags('DT_RPATH'): + return tag.rpath.split(':') + + break # There is only one dynamic section + + return [] + + +def get_arch(elf: ELFFile) -> str: + return elf.get_machine_arch() + + +def get_osabi(elf: ELFFile) -> str: + return elf.header["e_ident"]["EI_OSABI"] + + +def osabi_are_compatible(wanted: str, got: str) -> bool: + """ + Tests whether two OS ABIs are compatible, taking into account the + generally accepted compatibility of SVR4 ABI with other ABIs. + """ + if not wanted or not got: + # One of the types couldn't be detected, so as a fallback we'll + # assume they're compatible. + return True + + # Generally speaking, the base ABI (0x00), which is represented by + # readelf(1) as "UNIX - System V", indicates broad compatibility + # with other ABIs. + # + # TODO: This isn't always true. For example, some OSes embed ABI + # compatibility into SHT_NOTE sections like .note.tag and + # .note.ABI-tag. It would be prudent to add these to the detection + # logic to produce better ABI information. + if wanted == 'ELFOSABI_SYSV': + return True + + # Similarly here, we should be able to link against a superset of + # features, so even if the target has another ABI, this should be + # fine. + if got == 'ELFOSABI_SYSV': + return True + + # Otherwise, we simply return whether the ABIs are identical. + return wanted == got + + +def glob(path: Path, pattern: str, recursive: bool) -> Iterator[Path]: + return path.rglob(pattern) if recursive else path.glob(pattern) + + +cached_paths: Set[Path] = set() +soname_cache: DefaultDict[Tuple[str, str], List[Tuple[Path, str]]] = defaultdict(list) + + +def populate_cache(initial: List[Path], recursive: bool =False) -> None: + lib_dirs = list(initial) + + while lib_dirs: + lib_dir = lib_dirs.pop(0) + + if lib_dir in cached_paths: + continue + + cached_paths.add(lib_dir) + + for path in glob(lib_dir, "*.so*", recursive): + if not path.is_file(): + continue + + resolved = path.resolve() + try: + with open_elf(path) as elf: + osabi = get_osabi(elf) + arch = get_arch(elf) + rpath = [Path(p) for p in get_rpath(elf) + if p and '$ORIGIN' not in p] + lib_dirs += rpath + soname_cache[(path.name, arch)].append((resolved.parent, osabi)) + + except ELFError: + # Not an ELF file in the right format + pass + + +def find_dependency(soname: str, soarch: str, soabi: str) -> Optional[Path]: + for lib, libabi in soname_cache[(soname, soarch)]: + if osabi_are_compatible(soabi, libabi): + return lib + return None + + +@dataclass +class Dependency: + file: Path # The file that contains the dependency + name: Path # The name of the dependency + found: bool = False # Whether it was found somewhere + + +def auto_patchelf_file(path: Path, runtime_deps: list[Path]) -> list[Dependency]: + try: + with open_elf(path) as elf: + + if is_static_executable(elf): + # No point patching these + print(f"skipping {path} because it is statically linked") + return [] + + if elf.num_segments() == 0: + # no segment (e.g. object file) + print(f"skipping {path} because it contains no segment") + return [] + + file_arch = get_arch(elf) + if interpreter_arch != file_arch: + # Our target architecture is different than this file's + # architecture, so skip it. + print(f"skipping {path} because its architecture ({file_arch})" + f" differs from target ({interpreter_arch})") + return [] + + file_osabi = get_osabi(elf) + if not osabi_are_compatible(interpreter_osabi, file_osabi): + print(f"skipping {path} because its OS ABI ({file_osabi}) is" + f" not compatible with target ({interpreter_osabi})") + return [] + + file_is_dynamic_executable = is_dynamic_executable(elf) + + file_dependencies = map(Path, get_dependencies(elf)) + + except ELFError: + return [] + + rpath = [] + if file_is_dynamic_executable: + print("setting interpreter of", path) + subprocess.run( + ["patchelf", "--set-interpreter", interpreter_path.as_posix(), path.as_posix()], + check=True) + rpath += runtime_deps + + print("searching for dependencies of", path) + dependencies = [] + # Be sure to get the output of all missing dependencies instead of + # failing at the first one, because it's more useful when working + # on a new package where you don't yet know the dependencies. + for dep in file_dependencies: + if dep.is_absolute() and dep.is_file(): + # This is an absolute path. If it exists, just use it. + # Otherwise, we probably want this to produce an error when + # checked (because just updating the rpath won't satisfy + # it). + continue + elif (libc_lib / dep).is_file(): + # This library exists in libc, and will be correctly + # resolved by the linker. + continue + + if found_dependency := find_dependency(dep.name, file_arch, file_osabi): + rpath.append(found_dependency) + dependencies.append(Dependency(path, dep, True)) + print(f" {dep} -> found: {found_dependency}") + else: + dependencies.append(Dependency(path, dep, False)) + print(f" {dep} -> not found!") + + # Dedup the rpath + rpath_str = ":".join(dict.fromkeys(map(Path.as_posix, rpath))) + + if rpath: + print("setting RPATH to:", rpath_str) + subprocess.run( + ["patchelf", "--set-rpath", rpath_str, path.as_posix()], + check=True) + + return dependencies + + +def auto_patchelf( + paths_to_patch: List[Path], + lib_dirs: List[Path], + runtime_deps: List[Path], + recursive: bool =True, + ignore_missing: bool =False) -> None: + + if not paths_to_patch: + sys.exit("No paths to patch, stopping.") + + # Add all shared objects of the current output path to the cache, + # before lib_dirs, so that they are chosen first in find_dependency. + populate_cache(paths_to_patch, recursive) + populate_cache(lib_dirs) + + dependencies = [] + for path in chain.from_iterable(glob(p, '*', recursive) for p in paths_to_patch): + if not path.is_symlink() and path.is_file(): + dependencies += auto_patchelf_file(path, runtime_deps) + + missing = [dep for dep in dependencies if not dep.found] + + # Print a summary of the missing dependencies at the end + for dep in missing: + print(f"auto-patchelf could not satisfy dependency {dep.name} wanted by {dep.file}") + + if missing and not ignore_missing: + sys.exit('auto-patchelf failed to find all the required dependencies.\n' + 'Add the missing dependencies to --libs or use --ignore-missing.') + + +def main() -> None: + parser = argparse.ArgumentParser( + prog="auto-patchelf", + description='auto-patchelf tries as hard as possible to patch the' + ' provided binary files by looking for compatible' + 'libraries in the provided paths.') + parser.add_argument( + "--ignore-missing", + action="store_true", + help="Do not fail when some dependencies are not found.") + parser.add_argument( + "--no-recurse", + dest="recursive", + action="store_false", + help="Patch only the provided paths, and ignore their children") + parser.add_argument( + "--paths", nargs="*", type=Path, + help="Paths whose content needs to be patched.") + parser.add_argument( + "--libs", nargs="*", type=Path, + help="Paths where libraries are searched for.") + parser.add_argument( + "--runtime-dependencies", nargs="*", type=Path, + help="Paths to prepend to the runtime path of executable binaries.") + + print("automatically fixing dependencies for ELF files") + args = parser.parse_args() + pprint.pprint(vars(args)) + + auto_patchelf( + args.paths, + args.libs, + args.runtime_dependencies, + args.recursive, + args.ignore_missing) + + +interpreter_path: Path = None # type: ignore +interpreter_osabi: str = None # type: ignore +interpreter_arch: str = None # type: ignore +libc_lib: Path = None # type: ignore + +if __name__ == "__main__": + nix_support = Path(os.environ['NIX_BINTOOLS']) / 'nix-support' + interpreter_path = Path((nix_support / 'dynamic-linker').read_text().strip()) + libc_lib = Path((nix_support / 'orig-libc').read_text().strip()) / 'lib' + + with open_elf(interpreter_path) as interpreter: + interpreter_osabi = get_osabi(interpreter) + interpreter_arch = get_arch(interpreter) + + if interpreter_arch and interpreter_osabi and interpreter_path and libc_lib: + main() + else: + sys.exit("Failed to parse dynamic linker (ld) properties.") diff --git a/pkgs/build-support/setup-hooks/auto-patchelf.sh b/pkgs/build-support/setup-hooks/auto-patchelf.sh index 4b3a1c5c390..9822674196a 100644 --- a/pkgs/build-support/setup-hooks/auto-patchelf.sh +++ b/pkgs/build-support/setup-hooks/auto-patchelf.sh @@ -1,289 +1,21 @@ #!/usr/bin/env bash declare -a autoPatchelfLibs -declare -Ag autoPatchelfFailedDeps +declare -a extraAutoPatchelfLibs gatherLibraries() { autoPatchelfLibs+=("$1/lib") } -# wrapper around patchelf to raise proper error messages -# containing the tried file name and command -runPatchelf() { - patchelf "$@" || (echo "Command failed: patchelf $*" && exit 1) -} - # shellcheck disable=SC2154 # (targetOffset is referenced but not assigned.) addEnvHooks "$targetOffset" gatherLibraries -isExecutable() { - # For dynamically linked ELF files it would be enough to check just for the - # INTERP section. However, we won't catch statically linked executables as - # they only have an ELF type of EXEC but no INTERP. - # - # So what we do here is just check whether *either* the ELF type is EXEC - # *or* there is an INTERP section. This also catches position-independent - # executables, as they typically have an INTERP section but their ELF type - # is DYN. - isExeResult="$(LANG=C $READELF -h -l "$1" 2> /dev/null \ - | grep '^ *Type: *EXEC\>\|^ *INTERP\>')" - # not using grep -q, because it can cause Broken pipe - # https://unix.stackexchange.com/questions/305547/broken-pipe-when-grepping-output-but-only-with-i-flag - [ -n "$isExeResult" ] -} - -# We cache dependencies so that we don't need to search through all of them on -# every consecutive call to findDependency. -declare -Ag autoPatchelfCachedDepsAssoc -declare -ag autoPatchelfCachedDeps - -addToDepCache() { - if [[ ${autoPatchelfCachedDepsAssoc[$1]+f} ]]; then return; fi - - # store deps in an assoc. array for efficient lookups - # otherwise findDependency would have quadratic complexity - autoPatchelfCachedDepsAssoc["$1"]="" - - # also store deps in normal array to maintain their order - autoPatchelfCachedDeps+=("$1") -} - -declare -gi depCacheInitialised=0 -declare -gi doneRecursiveSearch=0 -declare -g foundDependency - -getDepsFromElfBinary() { - # NOTE: This does not use runPatchelf because it may encounter non-ELF - # files. Caller is expected to check the return code if needed. - patchelf --print-needed "$1" 2> /dev/null -} - -getRpathFromElfBinary() { - # NOTE: This does not use runPatchelf because it may encounter non-ELF - # files. Caller is expected to check the return code if needed. - local rpath - IFS=':' read -ra rpath < <(patchelf --print-rpath "$1" 2> /dev/null) || return $? - - printf "%s\n" "${rpath[@]}" -} - -populateCacheForDep() { - local so="$1" - local rpath found - rpath="$(getRpathFromElfBinary "$so")" || return 1 - - for found in $(getDepsFromElfBinary "$so"); do - local rpathElem - for rpathElem in $rpath; do - # Ignore empty element or $ORIGIN magic variable which should be - # deterministically resolved by adding this package's library - # files early anyway. - # - # shellcheck disable=SC2016 - # (Expressions don't expand in single quotes, use double quotes for - # that.) - if [[ -z "$rpathElem" || "$rpathElem" == *'$ORIGIN'* ]]; then - continue - fi - - local soname="${found%.so*}" - local foundso= - for foundso in "$rpathElem/$soname".so*; do - addToDepCache "$foundso" - done - - # Found in this element of the rpath, no need to check others. - if [ -n "$foundso" ]; then - break - fi - done - done - - # Not found in any rpath element. - return 1 -} - -populateCacheWithRecursiveDeps() { - # Dependencies may add more to the end of this array, so we use a counter - # with while instead of a regular for loop here. - local -i i=0 - while [ $i -lt ${#autoPatchelfCachedDeps[@]} ]; do - populateCacheForDep "${autoPatchelfCachedDeps[$i]}" - i=$i+1 - done -} - -getBinArch() { - $OBJDUMP -f "$1" 2> /dev/null | sed -ne 's/^architecture: *\([^,]\+\).*/\1/p' -} - -# Returns the specific OS ABI for an ELF file in the format produced by -# readelf(1), like "UNIX - System V" or "UNIX - GNU". -getBinOsabi() { - $READELF -h "$1" 2> /dev/null | sed -ne 's/^[ \t]*OS\/ABI:[ \t]*\(.*\)/\1/p' -} - -# Tests whether two OS ABIs are compatible, taking into account the generally -# accepted compatibility of SVR4 ABI with other ABIs. -areBinOsabisCompatible() { - local wanted="$1" - local got="$2" - - if [[ -z "$wanted" || -z "$got" ]]; then - # One of the types couldn't be detected, so as a fallback we'll assume - # they're compatible. - return 0 - fi - - # Generally speaking, the base ABI (0x00), which is represented by - # readelf(1) as "UNIX - System V", indicates broad compatibility with other - # ABIs. - # - # TODO: This isn't always true. For example, some OSes embed ABI - # compatibility into SHT_NOTE sections like .note.tag and .note.ABI-tag. - # It would be prudent to add these to the detection logic to produce better - # ABI information. - if [[ "$wanted" == "UNIX - System V" ]]; then - return 0 - fi - - # Similarly here, we should be able to link against a superset of features, - # so even if the target has another ABI, this should be fine. - if [[ "$got" == "UNIX - System V" ]]; then - return 0 - fi - - # Otherwise, we simply return whether the ABIs are identical. - if [[ "$wanted" == "$got" ]]; then - return 0 - fi - - return 1 -} - -# NOTE: If you want to use this function outside of the autoPatchelf function, -# keep in mind that the dependency cache is only valid inside the subshell -# spawned by the autoPatchelf function, so invoking this directly will possibly -# rebuild the dependency cache. See the autoPatchelf function below for more -# information. -findDependency() { - local filename="$1" - local arch="$2" - local osabi="$3" - local lib dep - - if [ $depCacheInitialised -eq 0 ]; then - for lib in "${autoPatchelfLibs[@]}"; do - for so in "$lib/"*.so*; do addToDepCache "$so"; done - done - depCacheInitialised=1 - fi - - for dep in "${autoPatchelfCachedDeps[@]}"; do - if [ "$filename" = "${dep##*/}" ]; then - if [ "$(getBinArch "$dep")" = "$arch" ] && areBinOsabisCompatible "$osabi" "$(getBinOsabi "$dep")"; then - foundDependency="$dep" - return 0 - fi - fi - done - - # Populate the dependency cache with recursive dependencies *only* if we - # didn't find the right dependency so far and afterwards run findDependency - # again, but this time with $doneRecursiveSearch set to 1 so that it won't - # recurse again (and thus infinitely). - if [ $doneRecursiveSearch -eq 0 ]; then - populateCacheWithRecursiveDeps - doneRecursiveSearch=1 - findDependency "$filename" "$arch" || return 1 - return 0 - fi - return 1 -} - -autoPatchelfFile() { - local dep rpath="" toPatch="$1" - - local interpreter - interpreter="$(< "$NIX_BINTOOLS/nix-support/dynamic-linker")" - - local interpreterArch interpreterOsabi toPatchArch toPatchOsabi - interpreterArch="$(getBinArch "$interpreter")" - interpreterOsabi="$(getBinOsabi "$interpreter")" - toPatchArch="$(getBinArch "$toPatch")" - toPatchOsabi="$(getBinOsabi "$toPatch")" - - if [ "$interpreterArch" != "$toPatchArch" ]; then - # Our target architecture is different than this file's architecture, - # so skip it. - echo "skipping $toPatch because its architecture ($toPatchArch) differs from target ($interpreterArch)" >&2 - return 0 - elif ! areBinOsabisCompatible "$interpreterOsabi" "$toPatchOsabi"; then - echo "skipping $toPatch because its OS ABI ($toPatchOsabi) is not compatible with target ($interpreterOsabi)" >&2 - return 0 - fi - - if isExecutable "$toPatch"; then - runPatchelf --set-interpreter "$interpreter" "$toPatch" - # shellcheck disable=SC2154 - # (runtimeDependencies is referenced but not assigned.) - if [ -n "$runtimeDependencies" ]; then - for dep in $runtimeDependencies; do - rpath="$rpath${rpath:+:}$dep/lib" - done - fi - fi - - local libcLib - libcLib="$(< "$NIX_BINTOOLS/nix-support/orig-libc")/lib" - - echo "searching for dependencies of $toPatch" >&2 - - local missing - missing="$(getDepsFromElfBinary "$toPatch")" || return 0 - - # This ensures that we get the output of all missing dependencies instead - # of failing at the first one, because it's more useful when working on a - # new package where you don't yet know its dependencies. - - for dep in $missing; do - if [[ "$dep" == /* ]]; then - # This is an absolute path. If it exists, just use it. Otherwise, - # we probably want this to produce an error when checked (because - # just updating the rpath won't satisfy it). - if [ -f "$dep" ]; then - continue - fi - elif [ -f "$libcLib/$dep" ]; then - # This library exists in libc, and will be correctly resolved by - # the linker. - continue - fi - - echo -n " $dep -> " >&2 - if findDependency "$dep" "$toPatchArch" "$toPatchOsabi"; then - rpath="$rpath${rpath:+:}${foundDependency%/*}" - echo "found: $foundDependency" >&2 - else - echo "not found!" >&2 - autoPatchelfFailedDeps["$dep"]="$toPatch" - fi - done - - if [ -n "$rpath" ]; then - echo "setting RPATH to: $rpath" >&2 - runPatchelf --set-rpath "$rpath" "$toPatch" - fi -} - # Can be used to manually add additional directories with shared object files # to be included for the next autoPatchelf invocation. addAutoPatchelfSearchPath() { local -a findOpts=() - # XXX: Somewhat similar to the one in the autoPatchelf function, maybe make - # it DRY someday... while [ $# -gt 0 ]; do case "$1" in --) shift; break;; @@ -296,15 +28,19 @@ addAutoPatchelfSearchPath() { esac done - while IFS= read -r -d '' file; do - addToDepCache "$file" + local dir= + while IFS= read -r -d '' dir; do + extraAutoPatchelfLibs+=("$dir") done < <(find "$@" "${findOpts[@]}" \! -type d \ - \( -name '*.so' -o -name '*.so.*' \) -print0) + \( -name '*.so' -o -name '*.so.*' \) -print0 \ + | sed -z 's#/[^/]*$##' \ + | uniq -z + ) } + autoPatchelf() { local norecurse= - while [ $# -gt 0 ]; do case "$1" in --) shift; break;; @@ -317,47 +53,14 @@ autoPatchelf() { esac done - if [ $# -eq 0 ]; then - echo "autoPatchelf: No paths to patch specified." >&2 - return 1 - fi - - echo "automatically fixing dependencies for ELF files" >&2 - - # Add all shared objects of the current output path to the start of - # autoPatchelfCachedDeps so that it's chosen first in findDependency. - addAutoPatchelfSearchPath ${norecurse:+--no-recurse} -- "$@" - - while IFS= read -r -d $'\0' file; do - isELF "$file" || continue - segmentHeaders="$(LANG=C $READELF -l "$file")" - # Skip if the ELF file doesn't have segment headers (eg. object files). - # not using grep -q, because it can cause Broken pipe - grep -q '^Program Headers:' <<<"$segmentHeaders" || continue - if isExecutable "$file"; then - # Skip if the executable is statically linked. - grep -q "^ *INTERP\\>" <<<"$segmentHeaders" || continue - fi - # Jump file if patchelf is unable to parse it - # Some programs contain binary blobs for testing, - # which are identified as ELF but fail to be parsed by patchelf - patchelf "$file" || continue - autoPatchelfFile "$file" - done < <(find "$@" ${norecurse:+-maxdepth 1} -type f -print0) - - # fail if any dependencies were not found and - # autoPatchelfIgnoreMissingDeps is not set - local depsMissing=0 - for failedDep in "${!autoPatchelfFailedDeps[@]}"; do - echo "autoPatchelfHook could not satisfy dependency $failedDep wanted by ${autoPatchelfFailedDeps[$failedDep]}" - depsMissing=1 - done - # shellcheck disable=SC2154 - # (autoPatchelfIgnoreMissingDeps is referenced but not assigned.) - if [[ $depsMissing == 1 && -z "$autoPatchelfIgnoreMissingDeps" ]]; then - echo "Add the missing dependencies to the build inputs or set autoPatchelfIgnoreMissingDeps=true" - exit 1 - fi + local runtimeDependenciesArray=($runtimeDependencies) + @pythonInterpreter@ @autoPatchelfScript@ \ + ${norecurse:+--no-recurse} \ + ${autoPatchelfIgnoreMissingDeps:+--ignore-missing} \ + --paths "$@" \ + --libs "${autoPatchelfLibs[@]}" \ + "${extraAutoPatchelfLibs[@]}" \ + --runtime-dependencies "${runtimeDependenciesArray[@]/%//lib}" } # XXX: This should ultimately use fixupOutputHooks but we currently don't have diff --git a/pkgs/build-support/setup-hooks/make-wrapper.sh b/pkgs/build-support/setup-hooks/make-wrapper.sh index 604096135c2..fa606583289 100644 --- a/pkgs/build-support/setup-hooks/make-wrapper.sh +++ b/pkgs/build-support/setup-hooks/make-wrapper.sh @@ -51,7 +51,19 @@ makeWrapper() { local varName="$2" # name of list variable to add to local separator="$3" # character used to separate elements of list local value="$4" # one value, or multiple values separated by `separator`, to add to list - if test -n "$value"; then + + # Disable file globbing, since bash will otherwise try to find + # filenames matching the the value to be prefixed/suffixed if + # it contains characters considered wildcards, such as `?` and + # `*`. We want the value as is, except we also want to split + # it on on the separator; hence we can't quote it. + local reenableGlob=0 + if [[ ! -o noglob ]]; then + reenableGlob=1 + fi + set -o noglob + + if [[ -n "$value" ]]; then local old_ifs=$IFS IFS=$separator @@ -86,6 +98,10 @@ makeWrapper() { done IFS=$old_ifs fi + + if (( reenableGlob )); then + set +o noglob + fi } mkdir -p "$(dirname "$wrapper")" diff --git a/pkgs/data/fonts/borg-sans-mono/default.nix b/pkgs/data/fonts/borg-sans-mono/default.nix new file mode 100644 index 00000000000..57b0a23bf7b --- /dev/null +++ b/pkgs/data/fonts/borg-sans-mono/default.nix @@ -0,0 +1,26 @@ +{ lib, fetchzip }: + +let + pname = "borg-sans-mono"; + version = "0.2.0"; +in +fetchzip { + name = "${pname}-${version}"; + + # https://github.com/marnen/borg-sans-mono/issues/19 + url = "https://github.com/marnen/borg-sans-mono/files/107663/BorgSansMono.ttf.zip"; + sha256 = "1gz4ab0smw76ih5cs2l3n92c77nv7ld5zghq42avjsfhxrc2n5ri"; + + postFetch = '' + mkdir -p $out/share/fonts + unzip -j $downloadedFile \*.ttf -d $out/share/fonts/truetype + ''; + + meta = with lib; { + description = "Droid Sans Mono Slashed + Hasklig-style ligatures"; + homepage = "https://github.com/marnen/borg-sans-mono"; + license = licenses.asl20; + platforms = platforms.all; + maintainers = with maintainers; [ atila ]; + }; +} diff --git a/pkgs/data/fonts/lxgw-wenkai/default.nix b/pkgs/data/fonts/lxgw-wenkai/default.nix index 0d328e0a8de..a5ead2274b8 100644 --- a/pkgs/data/fonts/lxgw-wenkai/default.nix +++ b/pkgs/data/fonts/lxgw-wenkai/default.nix @@ -1,6 +1,6 @@ { lib, fetchzip }: -let version = "1.210"; in +let version = "1.222"; in fetchzip { name = "lxgw-wenkai-${version}"; url = "https://github.com/lxgw/LxgwWenKai/releases/download/v${version}/lxgw-wenkai-v${version}.tar.gz"; @@ -11,7 +11,7 @@ fetchzip { cp *.ttf $out/share/fonts/truetype ''; - sha256 = "n8vnkoOJuUO4Gh+GUInZ/HJK5t4pD7MrPPaxDyH+0Qw="; + sha256 = "sha256-u2NTEYZrotOHktc2R5RWMFqeZ775/IpYJSUBO6PWijM="; meta = with lib; { homepage = "https://lxgw.github.io/"; diff --git a/pkgs/data/fonts/vazir-fonts/default.nix b/pkgs/data/fonts/vazir-fonts/default.nix index b2c4f1faa3c..b8885298c08 100755 --- a/pkgs/data/fonts/vazir-fonts/default.nix +++ b/pkgs/data/fonts/vazir-fonts/default.nix @@ -2,7 +2,7 @@ let pname = "vazir-fonts"; - version = "30.1.0"; + version = "32.0.0"; in fetchFromGitHub { name = "${pname}-${version}"; @@ -14,7 +14,7 @@ in fetchFromGitHub { tar xf $downloadedFile --strip=1 find . -name '*.ttf' -exec install -m444 -Dt $out/share/fonts/truetype {} \; ''; - sha256 = "sha256-J1l6rBFgaXFtGnK0pH7GbaYTt5TI/OevjZrXmaEgkB4="; + sha256 = "sha256-Uy8hgBtCcTLwXu9FkLN1WavUfP74Jf53ChxVGS3UBVM="; meta = with lib; { homepage = "https://github.com/rastikerdar/vazir-font"; diff --git a/pkgs/data/icons/kora-icon-theme/default.nix b/pkgs/data/icons/kora-icon-theme/default.nix index 8df63a75ad8..01572e79761 100644 --- a/pkgs/data/icons/kora-icon-theme/default.nix +++ b/pkgs/data/icons/kora-icon-theme/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "kora-icon-theme"; - version = "1.5.0"; + version = "1.5.1"; src = fetchFromGitHub { owner = "bikass"; repo = "kora"; rev = "v${version}"; - sha256 = "sha256-kUgNj7KuxsQ/BvQ0ORl3xzEm9gv69+2PS0Bgv8i/S9U="; + sha256 = "sha256-3TKjd2Lblb+/zFq7rkdgnD1dJU3kis7QZi7Ui74IWzA="; }; nativeBuildInputs = [ diff --git a/pkgs/data/misc/tzdata/default.nix b/pkgs/data/misc/tzdata/default.nix index 52662b190a7..78c93b05033 100644 --- a/pkgs/data/misc/tzdata/default.nix +++ b/pkgs/data/misc/tzdata/default.nix @@ -26,7 +26,7 @@ stdenv.mkDerivation rec { "BINDIR=$(bin)/bin" "ZICDIR=$(bin)/bin" "ETCDIR=$(TMPDIR)/etc" - "TZDEFAULT=$(TMPDIR)/etc" + "TZDEFAULT=tzdefault-to-remove" "LIBDIR=$(dev)/lib" "MANDIR=$(man)/share/man" "AWK=awk" @@ -54,6 +54,7 @@ stdenv.mkDerivation rec { postInstall = '' rm $out/share/zoneinfo-posix + rm $out/share/zoneinfo/tzdefault-to-remove mkdir $out/share/zoneinfo/posix ( cd $out/share/zoneinfo/posix; ln -s ../* .; rm posix ) mv $out/share/zoneinfo-leaps $out/share/zoneinfo/right diff --git a/pkgs/data/misc/v2ray-geoip/default.nix b/pkgs/data/misc/v2ray-geoip/default.nix index b92014b30e0..7e2b12e863f 100644 --- a/pkgs/data/misc/v2ray-geoip/default.nix +++ b/pkgs/data/misc/v2ray-geoip/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "v2ray-geoip"; - version = "202203100039"; + version = "202203170039"; src = fetchFromGitHub { owner = "v2fly"; repo = "geoip"; - rev = "564c2c8de36d3680a1d5f209d6bb05e4f3f70dfc"; - sha256 = "sha256-JPpzIppgKQox8T6VC/kzhpLy+YAcuHdH5L6zqciOXow="; + rev = "0b5c94c368dc5f70ebf995e87188aa8f40d45489"; + sha256 = "sha256-iaqU6CkrewICONps43nbZaUiM2aahSwfSD5bZz1P4Zc="; }; installPhase = '' diff --git a/pkgs/data/themes/yaru/default.nix b/pkgs/data/themes/yaru/default.nix index eb62da715ce..67762e747f4 100644 --- a/pkgs/data/themes/yaru/default.nix +++ b/pkgs/data/themes/yaru/default.nix @@ -16,13 +16,13 @@ stdenv.mkDerivation rec { pname = "yaru"; - version = "22.04.1"; + version = "22.04.2"; src = fetchFromGitHub { owner = "ubuntu"; repo = "yaru"; rev = version; - sha256 = "sha256-5mB5eTIPw4CqYSQm675MKbRwsYLpg+5WJrLDkbc6nKs="; + sha256 = "sha256-oW5OOJPhC3OB3GIQWTQxPgqE7p4bAO1TyVbyKUHnyD0="; }; nativeBuildInputs = [ meson sassc pkg-config glib ninja python3 ]; diff --git a/pkgs/desktops/arcan/arcan/clone-sources.nix b/pkgs/desktops/arcan/arcan/clone-sources.nix index 2ade63e70bf..c7c6bebb704 100644 --- a/pkgs/desktops/arcan/arcan/clone-sources.nix +++ b/pkgs/desktops/arcan/arcan/clone-sources.nix @@ -11,7 +11,7 @@ rev = "94cb3a2eb96b3f17a1a3bd0e6f7da97c0e1d8f57"; sha256 = "sha256-LzjqunX/T8khF2UjPlPYiQOwMGem8MqPYneR2LdZ5Fg="; }; - libuvc-src = fetchgit { + libuvc-src = fetchFromGitHub { owner = "libuvc"; repo = "libuvc"; rev = "b2b01ae6a2875d05c99eb256bb15815018d6e837"; diff --git a/pkgs/desktops/arcan/durden/default.nix b/pkgs/desktops/arcan/durden/default.nix index b5fc02127ec..46012d69d2d 100644 --- a/pkgs/desktops/arcan/durden/default.nix +++ b/pkgs/desktops/arcan/durden/default.nix @@ -5,15 +5,19 @@ stdenv.mkDerivation rec { pname = "durden"; - version = "0.6.1+date=2021-10-17"; + version = "0.6.1+date=2022-03-11"; src = fetchFromGitHub { owner = "letoram"; repo = pname; - rev = "5fb8b0f9bc2952ed9cf7dc20a1c5c0cc44c02ff1"; - hash = "sha256-+EIsrCkMe9MrUQOCh0R+rsDg/Rqs3iQWO0GZCgZQ+No="; + rev = "fec2a1051500df28becce188d932645743091efa"; + hash = "sha256-uZ7oTnkWG3P/4ETgn6MQ9v47mRAJnvyzglQS7jlabPA="; }; + dontConfigure = true; + + dontBuild = true; + installPhase = '' runHook preInstall diff --git a/pkgs/desktops/arcan/pipeworld/default.nix b/pkgs/desktops/arcan/pipeworld/default.nix index fa1a09230d9..09f809aa471 100644 --- a/pkgs/desktops/arcan/pipeworld/default.nix +++ b/pkgs/desktops/arcan/pipeworld/default.nix @@ -5,15 +5,19 @@ stdenv.mkDerivation rec { pname = "pipeworld"; - version = "0.pre+date=2021-11-26"; + version = "0.pre+date=2021-12-03"; src = fetchFromGitHub { owner = "letoram"; repo = pname; - rev = "9f816db154ca5c54af952ad11c2186ccac5bdd2d"; - hash = "sha256-uwnrRsMP0RLEGr2mEVQ6kEtV/c6t5qSCHY0ynywPzkw="; + rev = "c653414670cafb0c73a57492aa3d9510460b16a9"; + hash = "sha256-XuAsuTC+P6yoNlDnsT2fiWoqKW+1JKc9NF+Vn/ta0pk="; }; + dontConfigure = true; + + dontBuild = true; + installPhase = '' runHook preInstall diff --git a/pkgs/desktops/arcan/prio/default.nix b/pkgs/desktops/arcan/prio/default.nix index 34443baa801..406aea740fc 100644 --- a/pkgs/desktops/arcan/prio/default.nix +++ b/pkgs/desktops/arcan/prio/default.nix @@ -5,7 +5,7 @@ stdenv.mkDerivation rec { pname = "prio"; - version = "0.pre+unstable=2018-09-13"; + version = "0.pre+date=2018-09-13"; src = fetchFromGitHub { owner = "letoram"; @@ -14,6 +14,10 @@ stdenv.mkDerivation rec { hash = "sha256-Idv/duEYmDk/rO+TI8n+FY3VFDtUEh8C292jh12BJuM="; }; + dontConfigure = true; + + dontBuild = true; + installPhase = '' runHook preInstall diff --git a/pkgs/desktops/arcan/xarcan/default.nix b/pkgs/desktops/arcan/xarcan/default.nix index d72bf4ad5bb..0668754d6aa 100644 --- a/pkgs/desktops/arcan/xarcan/default.nix +++ b/pkgs/desktops/arcan/xarcan/default.nix @@ -38,23 +38,15 @@ stdenv.mkDerivation rec { pname = "xarcan"; - version = "0.6.0+unstable=2021-06-14"; + version = "0.6.0+date=2021-08-26"; src = fetchFromGitHub { owner = "letoram"; repo = pname; - rev = "98d28a5f2c6860bb191fbc1c9e577c18e4c9a9b7"; - hash = "sha256-UTIVDKnYD/q0K6G7NJUKh1tHcqnsuiJ/cQxWuPMJ2G4="; + rev = "e40f0176e495ffdad6e7405c58378df6532eb70d"; + hash = "sha256-T+1oL7P5MTDkeSfW6OXc1OgfZ8E6e/4YRonf1eXcfIA="; }; - patches = [ - # fix build with meson 0.60 - (fetchpatch { - url = "https://github.com/letoram/xarcan/commit/b67e514dbb59bffc23b75d47ca7f24e96c4aeb05.patch"; - sha256 = "sha256-tSQmNy1Id6nDIN+03dc1+rEEF8fMq0yJBiscNM60xic="; - }) - ]; - nativeBuildInputs = [ meson ninja @@ -122,6 +114,6 @@ stdenv.mkDerivation rec { ''; license = licenses.mit; maintainers = with maintainers; [ AndersonTorres ]; - platforms = platforms.all; + platforms = platforms.unix; }; } diff --git a/pkgs/desktops/enlightenment/terminology/default.nix b/pkgs/desktops/enlightenment/terminology/default.nix index a2e4f717f48..7b3ffe2f112 100644 --- a/pkgs/desktops/enlightenment/terminology/default.nix +++ b/pkgs/desktops/enlightenment/terminology/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, meson, ninja, pkg-config, python3, efl }: +{ lib, stdenv, fetchurl, meson, ninja, pkg-config, python3, efl, nixosTests }: stdenv.mkDerivation rec { pname = "terminology"; @@ -24,6 +24,8 @@ stdenv.mkDerivation rec { patchShebangs data/colorschemes/*.py ''; + passthru.tests.test = nixosTests.terminal-emulators.terminology; + meta = with lib; { description = "Powerful terminal emulator based on EFL"; homepage = "https://www.enlightenment.org/about-terminology"; diff --git a/pkgs/desktops/gnome/core/gnome-settings-daemon/3.38/default.nix b/pkgs/desktops/gnome/core/gnome-settings-daemon/3.38/default.nix index aae01577a88..b043883a492 100644 --- a/pkgs/desktops/gnome/core/gnome-settings-daemon/3.38/default.nix +++ b/pkgs/desktops/gnome/core/gnome-settings-daemon/3.38/default.nix @@ -1,4 +1,5 @@ -{ lib, stdenv +{ stdenv +, lib , fetchpatch , substituteAll , fetchurl @@ -70,6 +71,14 @@ stdenv.mkDerivation rec { }) # Fix build with new meson + # plugins/power/meson.build:78:7: ERROR: Function does not take positional arguments. + # https://gitlab.gnome.org/GNOME/gnome-settings-daemon/-/merge_requests/283 + (fetchpatch { + url = "https://gitlab.gnome.org/GNOME/gnome-settings-daemon/-/commit/afa7e4bb9c519e2daf500a6079088669500768c0.patch"; + sha256 = "8wxJIKPoZyfs1t0zAsb5SVCdt297NUiGmXIBNI6hbCQ="; + }) + # meson.build:86:3: ERROR: The `==` operator of str does not accept objects of type bool (True) + # https://gitlab.gnome.org/GNOME/gnome-settings-daemon/-/merge_requests/249 (fetchpatch { url = "https://gitlab.gnome.org/GNOME/gnome-settings-daemon/-/commit/28e28e9e598342c897ae5ca350d0da6f4aea057b.diff"; sha256 = "U+suR7wYjLWPqmkJpHm6pPOWL7sjL6GhIFX8MHrBRAY="; diff --git a/pkgs/desktops/gnome/core/gnome-terminal/default.nix b/pkgs/desktops/gnome/core/gnome-terminal/default.nix index 69fb69261f9..588d6e3ced3 100644 --- a/pkgs/desktops/gnome/core/gnome-terminal/default.nix +++ b/pkgs/desktops/gnome/core/gnome-terminal/default.nix @@ -23,6 +23,7 @@ , pcre2 , libxslt , docbook-xsl-nons +, nixosTests }: stdenv.mkDerivation rec { @@ -82,6 +83,8 @@ stdenv.mkDerivation rec { }; }; + passthru.tests.test = nixosTests.terminal-emulators.gnome-terminal; + meta = with lib; { description = "The GNOME Terminal Emulator"; homepage = "https://wiki.gnome.org/Apps/Terminal"; diff --git a/pkgs/desktops/lxqt/qterminal/default.nix b/pkgs/desktops/lxqt/qterminal/default.nix index e93e404762a..9412506385b 100644 --- a/pkgs/desktops/lxqt/qterminal/default.nix +++ b/pkgs/desktops/lxqt/qterminal/default.nix @@ -8,6 +8,7 @@ , qttools , qtx11extras , lxqtUpdateScript +, nixosTests }: mkDerivation rec { @@ -35,6 +36,8 @@ mkDerivation rec { passthru.updateScript = lxqtUpdateScript { inherit pname version src; }; + passthru.tests.test = nixosTests.terminal-emulators.qterminal; + meta = with lib; { homepage = "https://github.com/lxqt/qterminal"; description = "A lightweight Qt-based terminal emulator"; diff --git a/pkgs/desktops/mate/mate-terminal/default.nix b/pkgs/desktops/mate/mate-terminal/default.nix index 19fa5697f96..fcae87a869e 100644 --- a/pkgs/desktops/mate/mate-terminal/default.nix +++ b/pkgs/desktops/mate/mate-terminal/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, pkg-config, gettext, itstool, libxml2, mate-desktop, dconf, vte, pcre2, wrapGAppsHook, mateUpdateScript }: +{ lib, stdenv, fetchurl, pkg-config, gettext, itstool, libxml2, mate-desktop, dconf, vte, pcre2, wrapGAppsHook, mateUpdateScript, nixosTests }: stdenv.mkDerivation rec { pname = "mate-terminal"; @@ -28,6 +28,8 @@ stdenv.mkDerivation rec { passthru.updateScript = mateUpdateScript { inherit pname version; }; + passthru.tests.test = nixosTests.terminal-emulators.mate-terminal; + meta = with lib; { description = "MATE desktop terminal emulator"; homepage = "https://mate-desktop.org"; diff --git a/pkgs/desktops/pantheon/apps/appcenter/default.nix b/pkgs/desktops/pantheon/apps/appcenter/default.nix index 93c10d07292..bfbfb6d53d3 100644 --- a/pkgs/desktops/pantheon/apps/appcenter/default.nix +++ b/pkgs/desktops/pantheon/apps/appcenter/default.nix @@ -5,7 +5,6 @@ , appstream-glib , dbus , desktop-file-utils -, elementary-icon-theme , fetchFromGitHub , fetchpatch , flatpak @@ -65,7 +64,6 @@ stdenv.mkDerivation rec { buildInputs = [ appstream - elementary-icon-theme flatpak glib granite diff --git a/pkgs/desktops/pantheon/apps/elementary-calculator/default.nix b/pkgs/desktops/pantheon/apps/elementary-calculator/default.nix index 2356d362f6b..703913998a4 100644 --- a/pkgs/desktops/pantheon/apps/elementary-calculator/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-calculator/default.nix @@ -13,7 +13,6 @@ , granite , libgee , libhandy -, elementary-icon-theme , appstream , wrapGAppsHook }: @@ -42,7 +41,6 @@ stdenv.mkDerivation rec { ]; buildInputs = [ - elementary-icon-theme granite gtk3 libgee diff --git a/pkgs/desktops/pantheon/apps/elementary-calendar/default.nix b/pkgs/desktops/pantheon/apps/elementary-calendar/default.nix index 70b092d3f2c..f3bd37b00e0 100644 --- a/pkgs/desktops/pantheon/apps/elementary-calendar/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-calendar/default.nix @@ -11,7 +11,6 @@ , vala , wrapGAppsHook , clutter -, elementary-icon-theme , evolution-data-server , folks , geoclue2 @@ -48,7 +47,6 @@ stdenv.mkDerivation rec { buildInputs = [ clutter - elementary-icon-theme evolution-data-server folks geoclue2 diff --git a/pkgs/desktops/pantheon/apps/elementary-camera/default.nix b/pkgs/desktops/pantheon/apps/elementary-camera/default.nix index 94bbc69047d..31dfa369818 100644 --- a/pkgs/desktops/pantheon/apps/elementary-camera/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-camera/default.nix @@ -13,7 +13,6 @@ , python3 , vala , wrapGAppsHook -, elementary-icon-theme , glib , granite , gst_all_1 @@ -57,7 +56,6 @@ stdenv.mkDerivation rec { ]; buildInputs = [ - elementary-icon-theme glib granite gtk3 diff --git a/pkgs/desktops/pantheon/apps/elementary-code/default.nix b/pkgs/desktops/pantheon/apps/elementary-code/default.nix index 4087168feb0..f1cd335459e 100644 --- a/pkgs/desktops/pantheon/apps/elementary-code/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-code/default.nix @@ -13,7 +13,6 @@ , vala , wrapGAppsHook , editorconfig-core-c -, elementary-icon-theme , granite , gtk3 , gtksourceview4 @@ -61,7 +60,6 @@ stdenv.mkDerivation rec { buildInputs = [ editorconfig-core-c - elementary-icon-theme granite gtk3 gtksourceview4 diff --git a/pkgs/desktops/pantheon/apps/elementary-feedback/default.nix b/pkgs/desktops/pantheon/apps/elementary-feedback/default.nix index 6d9fe808d8d..f589f4234ca 100644 --- a/pkgs/desktops/pantheon/apps/elementary-feedback/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-feedback/default.nix @@ -13,7 +13,6 @@ , granite , libgee , libhandy -, elementary-icon-theme , gettext , wrapGAppsHook , appstream @@ -51,7 +50,6 @@ stdenv.mkDerivation rec { buildInputs = [ appstream - elementary-icon-theme granite gtk3 libgee diff --git a/pkgs/desktops/pantheon/apps/elementary-files/default.nix b/pkgs/desktops/pantheon/apps/elementary-files/default.nix index 4314e74d5af..9147324b886 100644 --- a/pkgs/desktops/pantheon/apps/elementary-files/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-files/default.nix @@ -22,7 +22,6 @@ , sqlite , zeitgeist , glib-networking -, elementary-icon-theme , libcloudproviders , libgit2-glib , wrapGAppsHook @@ -57,7 +56,6 @@ stdenv.mkDerivation rec { buildInputs = [ bamf elementary-dock - elementary-icon-theme glib granite gtk3 diff --git a/pkgs/desktops/pantheon/apps/elementary-mail/default.nix b/pkgs/desktops/pantheon/apps/elementary-mail/default.nix index 4a003d6c5ab..e56f85005de 100644 --- a/pkgs/desktops/pantheon/apps/elementary-mail/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-mail/default.nix @@ -17,7 +17,6 @@ , libgdata , sqlite , granite -, elementary-icon-theme , evolution-data-server , appstream , wrapGAppsHook @@ -57,7 +56,6 @@ stdenv.mkDerivation rec { ]; buildInputs = [ - elementary-icon-theme evolution-data-server folks granite diff --git a/pkgs/desktops/pantheon/apps/elementary-music/default.nix b/pkgs/desktops/pantheon/apps/elementary-music/default.nix index 84383042776..f43234faa40 100644 --- a/pkgs/desktops/pantheon/apps/elementary-music/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-music/default.nix @@ -10,7 +10,6 @@ , python3 , vala , wrapGAppsHook -, elementary-icon-theme , glib , granite , gst_all_1 @@ -61,7 +60,6 @@ stdenv.mkDerivation rec { ]; buildInputs = [ - elementary-icon-theme glib granite gtk3 diff --git a/pkgs/desktops/pantheon/apps/elementary-photos/default.nix b/pkgs/desktops/pantheon/apps/elementary-photos/default.nix index e5a8523014d..48cfda3df76 100644 --- a/pkgs/desktops/pantheon/apps/elementary-photos/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-photos/default.nix @@ -28,7 +28,6 @@ , libwebp , appstream , wrapGAppsHook -, elementary-icon-theme }: stdenv.mkDerivation rec { @@ -63,7 +62,6 @@ stdenv.mkDerivation rec { ]; buildInputs = [ - elementary-icon-theme geocode-glib gexiv2 granite diff --git a/pkgs/desktops/pantheon/apps/elementary-screenshot/default.nix b/pkgs/desktops/pantheon/apps/elementary-screenshot/default.nix index 7629da0f734..48a68860dd9 100644 --- a/pkgs/desktops/pantheon/apps/elementary-screenshot/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-screenshot/default.nix @@ -14,7 +14,6 @@ , libgee , libhandy , libcanberra -, elementary-icon-theme , wrapGAppsHook }: @@ -49,7 +48,6 @@ stdenv.mkDerivation rec { ]; buildInputs = [ - elementary-icon-theme granite gtk3 libcanberra diff --git a/pkgs/desktops/pantheon/apps/elementary-tasks/default.nix b/pkgs/desktops/pantheon/apps/elementary-tasks/default.nix index f220db8868d..c101e57e1ac 100644 --- a/pkgs/desktops/pantheon/apps/elementary-tasks/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-tasks/default.nix @@ -11,7 +11,6 @@ , vala , wrapGAppsHook , clutter-gtk -, elementary-icon-theme , evolution-data-server , granite , geoclue2 @@ -48,7 +47,6 @@ stdenv.mkDerivation rec { buildInputs = [ clutter-gtk - elementary-icon-theme evolution-data-server granite geoclue2 diff --git a/pkgs/desktops/pantheon/apps/elementary-terminal/default.nix b/pkgs/desktops/pantheon/apps/elementary-terminal/default.nix index e796a2a344a..fe6e5a40fa4 100644 --- a/pkgs/desktops/pantheon/apps/elementary-terminal/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-terminal/default.nix @@ -16,7 +16,6 @@ , libnotify , vte , libgee -, elementary-icon-theme , appstream , pcre2 , wrapGAppsHook @@ -55,7 +54,6 @@ stdenv.mkDerivation rec { ]; buildInputs = [ - elementary-icon-theme granite gtk3 libgee diff --git a/pkgs/desktops/pantheon/apps/elementary-videos/default.nix b/pkgs/desktops/pantheon/apps/elementary-videos/default.nix index cb1ea291225..d4c03a07657 100644 --- a/pkgs/desktops/pantheon/apps/elementary-videos/default.nix +++ b/pkgs/desktops/pantheon/apps/elementary-videos/default.nix @@ -15,7 +15,6 @@ , clutter-gst , clutter-gtk , gst_all_1 -, elementary-icon-theme , wrapGAppsHook }: @@ -43,7 +42,6 @@ stdenv.mkDerivation rec { buildInputs = [ clutter-gst clutter-gtk - elementary-icon-theme granite gtk3 libgee diff --git a/pkgs/desktops/pantheon/apps/sideload/default.nix b/pkgs/desktops/pantheon/apps/sideload/default.nix index 6069fb85478..11ce2048ae4 100644 --- a/pkgs/desktops/pantheon/apps/sideload/default.nix +++ b/pkgs/desktops/pantheon/apps/sideload/default.nix @@ -2,7 +2,6 @@ , stdenv , desktop-file-utils , nix-update-script -, elementary-icon-theme , fetchFromGitHub , flatpak , gettext @@ -43,7 +42,6 @@ stdenv.mkDerivation rec { ]; buildInputs = [ - elementary-icon-theme flatpak glib granite diff --git a/pkgs/desktops/pantheon/apps/switchboard/default.nix b/pkgs/desktops/pantheon/apps/switchboard/default.nix index 209fa1202f3..ee43903a00a 100644 --- a/pkgs/desktops/pantheon/apps/switchboard/default.nix +++ b/pkgs/desktops/pantheon/apps/switchboard/default.nix @@ -13,7 +13,6 @@ , libhandy , granite , gettext -, elementary-icon-theme , wrapGAppsHook }: @@ -39,7 +38,6 @@ stdenv.mkDerivation rec { ]; buildInputs = [ - elementary-icon-theme granite gtk3 libgee diff --git a/pkgs/desktops/pantheon/desktop/elementary-greeter/default.nix b/pkgs/desktops/pantheon/desktop/elementary-greeter/default.nix index 45a8f119ee0..06fbfdc078e 100644 --- a/pkgs/desktops/pantheon/desktop/elementary-greeter/default.nix +++ b/pkgs/desktops/pantheon/desktop/elementary-greeter/default.nix @@ -60,7 +60,6 @@ stdenv.mkDerivation rec { buildInputs = [ accountsservice clutter-gtk # else we get could not generate cargs for mutter-clutter-2 - elementary-gtk-theme elementary-icon-theme gnome-settings-daemon gdk-pixbuf @@ -91,8 +90,11 @@ stdenv.mkDerivation rec { # for the compositor --prefix PATH : "$out/bin" - # the theme is hardcoded + # the GTK theme is hardcoded --prefix XDG_DATA_DIRS : "${elementary-gtk-theme}/share" + + # the icon theme is hardcoded + --prefix XDG_DATA_DIRS : "$XDG_ICON_DIRS" ) ''; diff --git a/pkgs/desktops/pantheon/desktop/elementary-onboarding/default.nix b/pkgs/desktops/pantheon/desktop/elementary-onboarding/default.nix index 3355ee09299..fa4ff7edf12 100644 --- a/pkgs/desktops/pantheon/desktop/elementary-onboarding/default.nix +++ b/pkgs/desktops/pantheon/desktop/elementary-onboarding/default.nix @@ -13,7 +13,6 @@ , glib , granite , libgee -, elementary-icon-theme , elementary-settings-daemon , gettext , libhandy @@ -56,7 +55,6 @@ stdenv.mkDerivation rec { ]; buildInputs = [ - elementary-icon-theme elementary-settings-daemon # settings schema glib granite diff --git a/pkgs/desktops/pantheon/desktop/elementary-shortcut-overlay/default.nix b/pkgs/desktops/pantheon/desktop/elementary-shortcut-overlay/default.nix index 1d4a1cb7414..3cf7cd365f1 100644 --- a/pkgs/desktops/pantheon/desktop/elementary-shortcut-overlay/default.nix +++ b/pkgs/desktops/pantheon/desktop/elementary-shortcut-overlay/default.nix @@ -14,7 +14,6 @@ , granite , libgee , libhandy -, elementary-icon-theme , wrapGAppsHook }: @@ -49,7 +48,6 @@ stdenv.mkDerivation rec { ]; buildInputs = [ - elementary-icon-theme glib granite gtk3 diff --git a/pkgs/desktops/pantheon/desktop/gala/default.nix b/pkgs/desktops/pantheon/desktop/gala/default.nix index 5a5af9ca5b9..75447adf4a2 100644 --- a/pkgs/desktops/pantheon/desktop/gala/default.nix +++ b/pkgs/desktops/pantheon/desktop/gala/default.nix @@ -19,7 +19,6 @@ , gnome-desktop , mutter , clutter -, elementary-icon-theme , gnome-settings-daemon , wrapGAppsHook , gexiv2 @@ -67,7 +66,6 @@ stdenv.mkDerivation rec { buildInputs = [ bamf clutter - elementary-icon-theme gnome-settings-daemon gexiv2 gnome-desktop diff --git a/pkgs/desktops/pantheon/desktop/wingpanel/default.nix b/pkgs/desktops/pantheon/desktop/wingpanel/default.nix index 2e3f51b4a6a..b996fdfdd6e 100644 --- a/pkgs/desktops/pantheon/desktop/wingpanel/default.nix +++ b/pkgs/desktops/pantheon/desktop/wingpanel/default.nix @@ -46,7 +46,6 @@ stdenv.mkDerivation rec { ]; buildInputs = [ - elementary-gtk-theme elementary-icon-theme gala granite @@ -64,8 +63,11 @@ stdenv.mkDerivation rec { preFixup = '' gappsWrapperArgs+=( - # this theme is required + # this GTK theme is required --prefix XDG_DATA_DIRS : "${elementary-gtk-theme}/share" + + # the icon theme is required + --prefix XDG_DATA_DIRS : "$XDG_ICON_DIRS" ) ''; diff --git a/pkgs/desktops/plasma-5/fetch.sh b/pkgs/desktops/plasma-5/fetch.sh index b0e706602b6..44b96e8beb9 100644 --- a/pkgs/desktops/plasma-5/fetch.sh +++ b/pkgs/desktops/plasma-5/fetch.sh @@ -1 +1 @@ -WGET_ARGS=( https://download.kde.org/stable/plasma/5.23.5/ -A '*.tar.xz' ) +WGET_ARGS=( https://download.kde.org/stable/plasma/5.24.0/ -A '*.tar.xz' ) diff --git a/pkgs/desktops/plasma-5/kdecoration.nix b/pkgs/desktops/plasma-5/kdecoration.nix index 1427997ee84..86d146c8b41 100644 --- a/pkgs/desktops/plasma-5/kdecoration.nix +++ b/pkgs/desktops/plasma-5/kdecoration.nix @@ -1,8 +1,8 @@ -{ mkDerivation, lib, extra-cmake-modules, qtbase, ki18n }: +{ mkDerivation, lib, extra-cmake-modules, qtbase, ki18n, kcoreaddons }: mkDerivation { pname = "kdecoration"; nativeBuildInputs = [ extra-cmake-modules ]; - buildInputs = [ qtbase ki18n ]; + buildInputs = [ qtbase ki18n kcoreaddons ]; outputs = [ "out" "dev" ]; } diff --git a/pkgs/desktops/plasma-5/kwin/0001-NixOS-Unwrap-executable-name-for-.desktop-search.patch b/pkgs/desktops/plasma-5/kwin/0001-NixOS-Unwrap-executable-name-for-.desktop-search.patch index e6ab62caf71..9bade4eab6a 100644 --- a/pkgs/desktops/plasma-5/kwin/0001-NixOS-Unwrap-executable-name-for-.desktop-search.patch +++ b/pkgs/desktops/plasma-5/kwin/0001-NixOS-Unwrap-executable-name-for-.desktop-search.patch @@ -63,11 +63,11 @@ index 0000000..726065d + +}// namespace + -+#endif // SERVICE_UTILS_H -diff --git a/src/service_utils.h b/src/service_utils.h ++#endif // NIXOS_UTILS_H +diff --git a/src/utils/serviceutils.h b/src/utils/serviceutils.h index 8a70c1f..475b15d 100644 ---- a/src/service_utils.h -+++ b/src/service_utils.h +--- a/src/utils/serviceutils.h ++++ b/src/utils/serviceutils.h @@ -19,6 +19,7 @@ #include <QLoggingCategory> //KF diff --git a/pkgs/desktops/plasma-5/libksysguard/0001-qdiriterator-follow-symlinks.patch b/pkgs/desktops/plasma-5/libksysguard/0001-qdiriterator-follow-symlinks.patch index cda82e08442..ec4a34037dc 100644 --- a/pkgs/desktops/plasma-5/libksysguard/0001-qdiriterator-follow-symlinks.patch +++ b/pkgs/desktops/plasma-5/libksysguard/0001-qdiriterator-follow-symlinks.patch @@ -11,11 +11,10 @@ diff --git a/processui/scripting.cpp b/processui/scripting.cpp index efed8ff..841761a 100644 --- a/processui/scripting.cpp +++ b/processui/scripting.cpp -@@ -167,7 +167,7 @@ void Scripting::loadContextMenu() { - QStringList scripts; +@@ -293,7 +293,7 @@ void Scripting::loadContextMenu() const QStringList dirs = QStandardPaths::locateAll(QStandardPaths::GenericDataLocation, QStringLiteral("ksysguard/scripts/"), QStandardPaths::LocateDirectory); - Q_FOREACH (const QString &dir, dirs) { + for (const QString &dir : dirs) { - QDirIterator it(dir, QStringList() << QStringLiteral("*.desktop"), QDir::NoFilter, QDirIterator::Subdirectories); + QDirIterator it(dir, QStringList() << QStringLiteral("*.desktop"), QDir::NoFilter, QDirIterator::Subdirectories | QDirIterator::FollowSymlinks); while (it.hasNext()) { diff --git a/pkgs/desktops/plasma-5/plasma-workspace/0001-startkde.patch b/pkgs/desktops/plasma-5/plasma-workspace/0001-startkde.patch index 508d3949884..e00d8b4a5c9 100644 --- a/pkgs/desktops/plasma-5/plasma-workspace/0001-startkde.patch +++ b/pkgs/desktops/plasma-5/plasma-workspace/0001-startkde.patch @@ -14,33 +14,33 @@ diff --git a/startkde/plasma-session/startup.cpp b/startkde/plasma-session/start index 270744053..356160e96 100644 --- a/startkde/plasma-session/startup.cpp +++ b/startkde/plasma-session/startup.cpp -@@ -143,7 +143,7 @@ Startup::Startup(QObject *parent) - const AutoStart autostart; +@@ -179,7 +179,7 @@ Startup::Startup(QObject *parent) + } // Keep for KF5; remove in KF6 (KInit will be gone then) - QProcess::execute(QStringLiteral(CMAKE_INSTALL_FULL_LIBEXECDIR_KF5 "/start_kdeinit_wrapper"), QStringList()); + QProcess::execute(QStringLiteral(NIXPKGS_START_KDEINIT_WRAPPER), QStringList()); - KJob *windowManagerJob = nullptr; - if (qEnvironmentVariable("XDG_SESSION_TYPE") != QLatin1String("wayland")) { -diff --git a/startkde/startplasma-waylandsession.cpp b/startkde/startplasma-waylandsession.cpp + KJob *phase1 = nullptr; + m_lock.reset(new QEventLoopLocker); +diff --git a/startkde/startplasma-wayland.cpp b/startkde/startplasma-wayland.cpp index 3a054a04f..b2e7ab3fb 100644 ---- a/startkde/startplasma-waylandsession.cpp -+++ b/startkde/startplasma-waylandsession.cpp -@@ -33,7 +33,7 @@ int main(int argc, char **argv) - out << "startplasma-waylandsession: Shutting down...\n"; +--- a/startkde/startplasma-wayland.cpp ++++ b/startkde/startplasma-wayland.cpp +@@ -91,7 +91,7 @@ int main(int argc, char **argv) + out << "startplasma-wayland: Shutting down...\n"; // Keep for KF5; remove in KF6 (KInit will be gone then) - runSync(QStringLiteral("kdeinit5_shutdown"), {}); + runSync(QStringLiteral(NIXPKGS_KDEINIT5_SHUTDOWN), {}); - out << "startplasma-waylandsession: Done.\n"; - + out << "startplasmacompositor: Shutting down...\n"; + cleanupPlasmaEnvironment(oldSystemdEnvironment); diff --git a/startkde/startplasma-x11.cpp b/startkde/startplasma-x11.cpp index d6b2c5439..534eeb0e5 100644 --- a/startkde/startplasma-x11.cpp +++ b/startkde/startplasma-x11.cpp -@@ -90,7 +90,7 @@ int main(int argc, char **argv) +@@ -89,7 +89,7 @@ int main(int argc, char **argv) out << "startkde: Shutting down...\n"; // Keep for KF5; remove in KF6 (KInit will be gone then) @@ -53,7 +53,7 @@ diff --git a/startkde/startplasma.cpp b/startkde/startplasma.cpp index 008fdfcaf..72468f21c 100644 --- a/startkde/startplasma.cpp +++ b/startkde/startplasma.cpp -@@ -39,7 +39,7 @@ QTextStream out(stderr); +@@ -50,7 +50,7 @@ QTextStream out(stderr); void messageBox(const QString &text) { out << text; @@ -62,7 +62,7 @@ index 008fdfcaf..72468f21c 100644 } QStringList allServices(const QLatin1String &prefix) -@@ -340,7 +340,7 @@ void setupX11() +@@ -412,7 +412,7 @@ void setupX11() // If the user has overwritten fonts, the cursor font may be different now // so don't move this up. @@ -70,17 +70,8 @@ index 008fdfcaf..72468f21c 100644 + runSync(QStringLiteral(NIXPKGS_XSETROOT), {QStringLiteral("-cursor_name"), QStringLiteral("left_ptr")}); } - void cleanupPlasmaEnvironment(const std::optional<QStringList> &oldSystemdEnvironment) -@@ -403,7 +403,7 @@ void setupFontDpi() - // TODO port to c++? - const QByteArray input = "Xft.dpi: " + QByteArray::number(fontsCfg.readEntry("forceFontDPI", 0)); - QProcess p; -- p.start(QStringLiteral("xrdb"), {QStringLiteral("-quiet"), QStringLiteral("-merge"), QStringLiteral("-nocpp")}); -+ p.start(QStringLiteral(NIXPKGS_XRDB), {QStringLiteral("-quiet"), QStringLiteral("-merge"), QStringLiteral("-nocpp")}); - p.setProcessChannelMode(QProcess::ForwardedChannels); - p.write(input); - p.closeWriteChannel(); -@@ -425,7 +425,7 @@ QProcess *setupKSplash() + void cleanupPlasmaEnvironment(const std::optional<QProcessEnvironment> &oldSystemdEnvironment) +@@ -500,7 +500,7 @@ QProcess *setupKSplash() KConfigGroup ksplashCfg = cfg.group("KSplash"); if (ksplashCfg.readEntry("Engine", QStringLiteral("KSplashQML")) == QLatin1String("KSplashQML")) { p = new QProcess; diff --git a/pkgs/desktops/plasma-5/plasma-workspace/0002-absolute-wallpaper-install-dir.patch b/pkgs/desktops/plasma-5/plasma-workspace/0002-absolute-wallpaper-install-dir.patch index 633551f6e3c..211316e2473 100644 --- a/pkgs/desktops/plasma-5/plasma-workspace/0002-absolute-wallpaper-install-dir.patch +++ b/pkgs/desktops/plasma-5/plasma-workspace/0002-absolute-wallpaper-install-dir.patch @@ -15,8 +15,8 @@ index a560da3..f723c1e 100644 type=image color=#1d99f3 fontSize=10 --background=${KDE_INSTALL_FULL_WALLPAPERDIR}/Next/contents/images/5120x2880.png -+background=${NIXPKGS_BREEZE_WALLPAPERS}/Next/contents/images/5120x2880.png +-background=${KDE_INSTALL_FULL_WALLPAPERDIR}/Next/contents/images/5120x2880.jpg ++background=${NIXPKGS_BREEZE_WALLPAPERS}/Next/contents/images/5120x2880.jpg needsFullUserModel=false -- 2.30.0 diff --git a/pkgs/desktops/plasma-5/srcs.nix b/pkgs/desktops/plasma-5/srcs.nix index 9de087f10e8..c5da337d10d 100644 --- a/pkgs/desktops/plasma-5/srcs.nix +++ b/pkgs/desktops/plasma-5/srcs.nix @@ -4,427 +4,435 @@ { bluedevil = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/bluedevil-5.23.5.tar.xz"; - sha256 = "1nbnmfdaisqngygyz1478fswsm1xp28v9l78xlw70yvvyjk2kc6v"; - name = "bluedevil-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/bluedevil-5.24.0.tar.xz"; + sha256 = "128br83hkxxrb6wca3d1racygdnfgk3r5md1gcjvgwb0gpy6bnzp"; + name = "bluedevil-5.24.0.tar.xz"; }; }; breeze = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/breeze-5.23.5.tar.xz"; - sha256 = "1pyw7rhzkbd9kwsm8l7iz867jhwlbmkarc5iihg0bkbcg1ds18ic"; - name = "breeze-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/breeze-5.24.0.tar.xz"; + sha256 = "08b3hihz98z7kdybb0y1b74q1dn511ga81qqqxzlfirgpp8c9f9q"; + name = "breeze-5.24.0.tar.xz"; }; }; breeze-grub = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/breeze-grub-5.23.5.tar.xz"; - sha256 = "12rm9a3vrmb3sm04l2c4vcj8psfyjxplp9wgh87q3k1rcyqz7fqk"; - name = "breeze-grub-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/breeze-grub-5.24.0.tar.xz"; + sha256 = "0p0pzmsd6scssyxcm9n58mp7fc9vz1lg4n7c1ch4bqragih1gnlr"; + name = "breeze-grub-5.24.0.tar.xz"; }; }; breeze-gtk = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/breeze-gtk-5.23.5.tar.xz"; - sha256 = "1ynbvfgy2nlxg5svjqazj70m7py58ixxa7xyj13dcj6i2ikbcjld"; - name = "breeze-gtk-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/breeze-gtk-5.24.0.tar.xz"; + sha256 = "090cczxc1ciic6wghz3p21gpfdwnc8pjcvq6wn7bfkp1i3r5mihp"; + name = "breeze-gtk-5.24.0.tar.xz"; }; }; breeze-plymouth = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/breeze-plymouth-5.23.5.tar.xz"; - sha256 = "1sllcrhz8hniqkgybk5bbb36fzjcdp5drjbf7v7jn4ih4wvybwmk"; - name = "breeze-plymouth-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/breeze-plymouth-5.24.0.tar.xz"; + sha256 = "1qqpwgp1yy3p1s0z21xwds6wx4z8daibkgk1bynj73cx7a2wch9g"; + name = "breeze-plymouth-5.24.0.tar.xz"; }; }; discover = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/discover-5.23.5.tar.xz"; - sha256 = "1kzp7jpw2kgml2yc3cx9n5syln3kyd9fxa5klh3sa1xn6bz9f8zr"; - name = "discover-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/discover-5.24.0.tar.xz"; + sha256 = "0dbfvqana31wqharsbyb8rcrw1w6l9x1g6p02aqwiph0inkrz20q"; + name = "discover-5.24.0.tar.xz"; }; }; drkonqi = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/drkonqi-5.23.5.tar.xz"; - sha256 = "08jjh52r6dmgp7dyxjxvavb4cxhmvzirwdn7hnmfhdbwkm09fqm5"; - name = "drkonqi-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/drkonqi-5.24.0.tar.xz"; + sha256 = "1ismgg7rcxijkprn4sci15wn4w2gmdn0fdbgvzxdcrqaf4g6qc3s"; + name = "drkonqi-5.24.0.tar.xz"; }; }; kactivitymanagerd = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/kactivitymanagerd-5.23.5.tar.xz"; - sha256 = "09v6pia34a694g0amj0miqi0j42yqvhfcv6yr9zfix4gf1qcdidn"; - name = "kactivitymanagerd-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/kactivitymanagerd-5.24.0.tar.xz"; + sha256 = "12dvgm3ilyqlxzm8209b7g42nfk0ahfzizs3pbmi18zapjszcsps"; + name = "kactivitymanagerd-5.24.0.tar.xz"; }; }; kde-cli-tools = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/kde-cli-tools-5.23.5.tar.xz"; - sha256 = "1203z87i4dmhq1vlrfj4kiw157i5zkccd2bwc7p7qwhgbddaw5jd"; - name = "kde-cli-tools-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/kde-cli-tools-5.24.0.tar.xz"; + sha256 = "0l8a4ysz1cqwdh3c20q51qamwh58vvs8yzb5jdvbp8bahsyyc4mr"; + name = "kde-cli-tools-5.24.0.tar.xz"; }; }; kde-gtk-config = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/kde-gtk-config-5.23.5.tar.xz"; - sha256 = "14qqxy2vz9004kfam9biv6q0601sn9yhrkx0i8y0958a58s5z3hp"; - name = "kde-gtk-config-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/kde-gtk-config-5.24.0.tar.xz"; + sha256 = "024pglycz2kbp9npnvbx5qpkz9381wyyp6xkalqynzr9gy58syrx"; + name = "kde-gtk-config-5.24.0.tar.xz"; }; }; kdecoration = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/kdecoration-5.23.5.tar.xz"; - sha256 = "1kqj8l95wy46kfsw3f1crxwba9zwdlbgi7345mamhyks74wj1628"; - name = "kdecoration-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/kdecoration-5.24.0.tar.xz"; + sha256 = "0xl8892w49z11k9mxgh7lp8a4l1x8wldmaij82kd1vnh9sxvb3f3"; + name = "kdecoration-5.24.0.tar.xz"; }; }; kdeplasma-addons = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/kdeplasma-addons-5.23.5.tar.xz"; - sha256 = "0cq0g8nqrkwv12010rsrmzqvxsa5arjpa87gvws8pah3v9k1xnkq"; - name = "kdeplasma-addons-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/kdeplasma-addons-5.24.0.tar.xz"; + sha256 = "0q8yf0gz4gjn1kyf545i8fpsn2dpy48qhjpm8ssp3ywv6s2abjxn"; + name = "kdeplasma-addons-5.24.0.tar.xz"; }; }; kgamma5 = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/kgamma5-5.23.5.tar.xz"; - sha256 = "17j0kv00ibs2g9jxfvflk965221iznm0ydgj3i05i6j2bd8301zn"; - name = "kgamma5-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/kgamma5-5.24.0.tar.xz"; + sha256 = "07w7l25snpi98j5bxg3zri5lsymabnli6h9d5w0qx0c19wzjwayl"; + name = "kgamma5-5.24.0.tar.xz"; }; }; khotkeys = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/khotkeys-5.23.5.tar.xz"; - sha256 = "13562p0bv0jkamx9q07wi5vs78bdrhd0h3qg5rxajc5s36gyh63a"; - name = "khotkeys-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/khotkeys-5.24.0.tar.xz"; + sha256 = "0gjdwdzg5vybalima8jnwrprqj0rnxmzds0x8w707nb9ypz4k7k6"; + name = "khotkeys-5.24.0.tar.xz"; }; }; kinfocenter = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/kinfocenter-5.23.5.tar.xz"; - sha256 = "0f7ik3gg1pimjlc94dp6psk0sha8k7pinx50nvmgsglap4k1xbk7"; - name = "kinfocenter-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/kinfocenter-5.24.0.tar.xz"; + sha256 = "09fq69q4300ppi1y9pp8s4h1bbai1p5qsz384bb445pjvwsyn6nf"; + name = "kinfocenter-5.24.0.tar.xz"; }; }; kmenuedit = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/kmenuedit-5.23.5.tar.xz"; - sha256 = "0k3dbip98zwia6m8nlgiw4mz09pkw7bik4cn3j73v2x3n7y3c542"; - name = "kmenuedit-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/kmenuedit-5.24.0.tar.xz"; + sha256 = "0bjiqdw4wqi5vpkn98wjjz23x6k47lvxac8nyxs8ddd9i8mlklij"; + name = "kmenuedit-5.24.0.tar.xz"; }; }; kscreen = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/kscreen-5.23.5.tar.xz"; - sha256 = "0j5rgzj132j7qy1pgi12mhihf1a89a3xh8j5f7dp5s1f8kyjq0yi"; - name = "kscreen-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/kscreen-5.24.0.tar.xz"; + sha256 = "19kqvvgj209ri035ldzn1k5l36l54rvagsnfzhw61v8rd9r6r02x"; + name = "kscreen-5.24.0.tar.xz"; }; }; kscreenlocker = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/kscreenlocker-5.23.5.tar.xz"; - sha256 = "07vhwvcyz9ynjzh44zny1f6di2knzy3fkiji3bhrki8p3zc9vjpm"; - name = "kscreenlocker-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/kscreenlocker-5.24.0.tar.xz"; + sha256 = "0d827h5br27sdd925brljb1mwnkzj739g5q0k8xkw9f9q9bxk8l8"; + name = "kscreenlocker-5.24.0.tar.xz"; }; }; ksshaskpass = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/ksshaskpass-5.23.5.tar.xz"; - sha256 = "0p8aka60mc8p96v3bx954jy99n9lf0a4b09sig307clwinfr23if"; - name = "ksshaskpass-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/ksshaskpass-5.24.0.tar.xz"; + sha256 = "1xiw25imhmkcikp746q9s393djmkdpkh9jb7h1diwwhambnimy6d"; + name = "ksshaskpass-5.24.0.tar.xz"; }; }; ksystemstats = { - version = "5.23.5"; 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- sha256 = "0x950nb56xmmdf7hfpbrd9hvgq1a8vca0x8g1qsvrjhh5ymydgif"; - name = "plasma-workspace-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/plasma-workspace-5.24.0.tar.xz"; + sha256 = "0jnksl2i2viw5aaqv38b371z4lxrxah6p1bjp40a1zfa68vr8dz3"; + name = "plasma-workspace-5.24.0.tar.xz"; }; }; plasma-workspace-wallpapers = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/plasma-workspace-wallpapers-5.23.5.tar.xz"; - sha256 = "0nr631yz8v671a87vh9f2a5kfjhn4f9147b339p09fwgfpx06vfx"; - name = "plasma-workspace-wallpapers-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/plasma-workspace-wallpapers-5.24.0.tar.xz"; + sha256 = "0329ks3q32nb9k3dxddlmxccjilgyxx5jplwbpln5b0p4plkn77k"; + name = "plasma-workspace-wallpapers-5.24.0.tar.xz"; }; }; plymouth-kcm = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/plymouth-kcm-5.23.5.tar.xz"; - sha256 = "0ynyqfm6az8yj3d30yxza5mjcsgfw6mmdkcgr3v95r6db112hqbx"; - name = "plymouth-kcm-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/plymouth-kcm-5.24.0.tar.xz"; + sha256 = "1pcvfrv8vmk43s14209iv8gngi3al9g4za74yz2l79nxscyppzh5"; + name = "plymouth-kcm-5.24.0.tar.xz"; }; }; polkit-kde-agent = { - version = "1-5.23.5"; + version = "1-5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/polkit-kde-agent-1-5.23.5.tar.xz"; - sha256 = "1wgpgbq987qa6fdayw4155fwym6rcn2z7w66s8faqv94x78njzln"; - name = "polkit-kde-agent-1-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/polkit-kde-agent-1-5.24.0.tar.xz"; + sha256 = "1qayxff5hl8qr9p5bsfrq0cz3x1jlwc8f0nx66rkbngphdm7085n"; + name = "polkit-kde-agent-1-5.24.0.tar.xz"; }; }; powerdevil = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/powerdevil-5.23.5.tar.xz"; - sha256 = "1lxjqd4w3jvnffcn9751j9k1fzsyasd1z8b1gm2iaf38iys21116"; - name = "powerdevil-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/powerdevil-5.24.0.tar.xz"; + sha256 = "06mrahlrqibvgfhcxywh72h6jblqq6sjsxqjzbq7zbq61vgc3jg3"; + name = "powerdevil-5.24.0.tar.xz"; }; }; qqc2-breeze-style = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/qqc2-breeze-style-5.23.5.tar.xz"; - sha256 = "15i9h2md54a1h7isvma4x9pni3iy0bk84z8ibn3a36ydimyq5hra"; - name = "qqc2-breeze-style-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/qqc2-breeze-style-5.24.0.tar.xz"; + sha256 = "11kwrqsq5i1y1kvhg75hvax7bz122cjdsvb66f6hvni09yfcgyci"; + name = "qqc2-breeze-style-5.24.0.tar.xz"; }; }; sddm-kcm = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/sddm-kcm-5.23.5.tar.xz"; - sha256 = "0csj1gml8w29dzv62zpbia9g10qz5k1nzv1yywsvay1q8rbqccxv"; - name = "sddm-kcm-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/sddm-kcm-5.24.0.tar.xz"; + sha256 = "011b68vca8nnmj9rxlyl5gl3xrrbysmcrx8szyfhha0wl9rgy2hx"; + name = "sddm-kcm-5.24.0.tar.xz"; }; }; systemsettings = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/systemsettings-5.23.5.tar.xz"; - sha256 = "0shsqancxbxy6f4fd9m2a30x7gnjmd6gb8kq4nhlj6rramcwn3jh"; - name = "systemsettings-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/systemsettings-5.24.0.tar.xz"; + sha256 = "1jx1kllfd5561fq11d90r7m68736rsdlyzb109yq8awdwrl1vkp3"; + name = "systemsettings-5.24.0.tar.xz"; }; }; xdg-desktop-portal-kde = { - version = "5.23.5"; + version = "5.24.0"; src = fetchurl { - url = "${mirror}/stable/plasma/5.23.5/xdg-desktop-portal-kde-5.23.5.tar.xz"; - sha256 = "09s3fpjdrnxqvnyxmxva0rx612d6pxv28qqvm00hzrb23nxz6qgb"; - name = "xdg-desktop-portal-kde-5.23.5.tar.xz"; + url = "${mirror}/stable/plasma/5.24.0/xdg-desktop-portal-kde-5.24.0.tar.xz"; + sha256 = "0f5wv4557avzcn7gf2hjqpn2p9r0d16k1iqcijzcfdmnvh2cp69d"; + name = "xdg-desktop-portal-kde-5.24.0.tar.xz"; }; }; } diff --git a/pkgs/desktops/xfce/applications/xfce4-terminal/default.nix b/pkgs/desktops/xfce/applications/xfce4-terminal/default.nix index 4d887f96ffd..65611f73a1d 100644 --- a/pkgs/desktops/xfce/applications/xfce4-terminal/default.nix +++ b/pkgs/desktops/xfce/applications/xfce4-terminal/default.nix @@ -1,4 +1,4 @@ -{ lib, mkXfceDerivation, gtk3, libxfce4ui, vte, xfconf, pcre2, libxslt, docbook_xml_dtd_45, docbook_xsl }: +{ lib, mkXfceDerivation, gtk3, libxfce4ui, vte, xfconf, pcre2, libxslt, docbook_xml_dtd_45, docbook_xsl, nixosTests }: mkXfceDerivation { category = "apps"; @@ -11,6 +11,8 @@ mkXfceDerivation { buildInputs = [ gtk3 libxfce4ui vte xfconf pcre2 ]; + passthru.tests.test = nixosTests.terminal-emulators.xfce4-terminal; + meta = with lib; { description = "A modern terminal emulator"; maintainers = with maintainers; [ ] ++ teams.xfce.members; diff --git a/pkgs/development/compilers/4th/001-install-manual-fixup.diff b/pkgs/development/compilers/4th/001-install-manual-fixup.diff new file mode 100644 index 00000000000..6002e7a0d99 --- /dev/null +++ b/pkgs/development/compilers/4th/001-install-manual-fixup.diff @@ -0,0 +1,12 @@ +diff -Naur 4th-3.64.0-old/sources/Makefile 4th-3.64.0-new/sources/Makefile +--- 4th-3.64.0-old/sources/Makefile 2022-03-15 12:37:45.925122854 -0300 ++++ 4th-3.64.0-new/sources/Makefile 2022-03-15 12:38:50.987870211 -0300 +@@ -125,7 +125,7 @@ + + install: mostlyinstall + install -Dm644 ../documentation/4th.1 $(MANDIR)/man1/4th.1 +- install -Dm644 ../documentation/4tHmanual.txt $(DOCDIR)/4th/ ++ install -Dm644 ../documentation/4tHmanual.pdf $(DOCDIR)/4th/ + + uninstall: + -rm -f $(LIBRARIES)/lib4th.{a,so*} diff --git a/pkgs/development/compilers/4th/default.nix b/pkgs/development/compilers/4th/default.nix index a8923879c06..d76a5cc733c 100644 --- a/pkgs/development/compilers/4th/default.nix +++ b/pkgs/development/compilers/4th/default.nix @@ -2,13 +2,18 @@ stdenv.mkDerivation rec { pname = "4th"; - version = "3.62.5"; + version = "3.64.0"; src = fetchurl { url = "https://sourceforge.net/projects/forth-4th/files/${pname}-${version}/${pname}-${version}-unix.tar.gz"; - sha256 = "sha256-+CL33Yz7CxdEpi1lPG7+kzV4rheJ7GCgiFCaOLyktPw="; + hash = "sha256-wJBekjFsFRIkhY/P/yHBQ8he+k+fGyrePGTP2Yjgpqg="; }; + patches = [ + # Fix install manual; report this patch to upstream + ./001-install-manual-fixup.diff + ]; + dontConfigure = true; makeFlags = [ @@ -31,9 +36,11 @@ stdenv.mkDerivation rec { ]; meta = with lib; { - description = "A portable Forth compiler"; homepage = "https://thebeez.home.xs4all.nl/4tH/index.html"; - license = licenses.lgpl3; - platforms = platforms.all; + description = "A portable Forth compiler"; + license = licenses.lgpl3Plus; + maintainers = with maintainers; [ AndersonTorres ]; + platforms = platforms.unix; }; } +# TODO: set Makefile according to platform diff --git a/pkgs/development/compilers/crystal/default.nix b/pkgs/development/compilers/crystal/default.nix index 4ac820b7e01..280e0fdd230 100644 --- a/pkgs/development/compilers/crystal/default.nix +++ b/pkgs/development/compilers/crystal/default.nix @@ -33,6 +33,7 @@ let i686-linux = "linux-i686"; x86_64-darwin = "darwin-x86_64"; aarch64-darwin = "darwin-universal"; + aarch64-linux = "linux-aarch64"; }; arch = archs.${stdenv.system} or (throw "system ${stdenv.system} not supported"); @@ -40,13 +41,19 @@ let checkInputs = [ git gmp openssl readline libxml2 libyaml ]; + binaryUrl = version: rel: + if arch == archs.aarch64-linux then + "https://dev.alpinelinux.org/archive/crystal/crystal-${version}-aarch64-alpine-linux-musl.tar.gz" + else + "https://github.com/crystal-lang/crystal/releases/download/${version}/crystal-${version}-${toString rel}-${arch}.tar.gz"; + genericBinary = { version, sha256s, rel ? 1 }: stdenv.mkDerivation rec { pname = "crystal-binary"; inherit version; src = fetchurl { - url = "https://github.com/crystal-lang/crystal/releases/download/${version}/crystal-${version}-${toString rel}-${arch}.tar.gz"; + url = binaryUrl version rel; sha256 = sha256s.${stdenv.system}; }; @@ -225,6 +232,7 @@ rec { x86_64-linux = "1949argajiyqyq09824yj3wjyv88gd8wbf20xh895saqfykiq880"; i686-linux = "0w0f4fwr2ijhx59i7ppicbh05hfmq7vffmgl7lal6im945m29vch"; x86_64-darwin = "01n0rf8zh551vv8wq3h0ifnsai0fz9a77yq87xx81y9dscl9h099"; + aarch64-linux = "0sns7l4q3z82qi3dc2r4p63f4s8hvifqzgq56ykwyrvawynjhd53"; }; }; diff --git a/pkgs/development/compilers/cudatoolkit/common.nix b/pkgs/development/compilers/cudatoolkit/common.nix index f408d7b3312..46832e1cc2d 100644 --- a/pkgs/development/compilers/cudatoolkit/common.nix +++ b/pkgs/development/compilers/cudatoolkit/common.nix @@ -61,8 +61,6 @@ stdenv.mkDerivation rec { gtk2 glib fontconfig freetype unixODBC alsa-lib ]; - rpath = "${lib.makeLibraryPath runtimeDependencies}:${stdenv.cc.cc.lib}/lib64"; - unpackPhase = '' sh $src --keep --noexec @@ -119,6 +117,12 @@ stdenv.mkDerivation rec { fi done mv pkg/builds/cuda_nvcc/nvvm $out/nvvm + + mv pkg/builds/cuda_sanitizer_api $out/cuda_sanitizer_api + ln -s $out/cuda_sanitizer_api/compute-sanitizer/compute-sanitizer $out/bin/compute-sanitizer + + mv pkg/builds/nsight_systems/target-linux-x64 $out/target-linux-x64 + mv pkg/builds/nsight_systems/host-linux-x64 $out/host-linux-x64 ''} rm -f $out/tools/CUDA_Occupancy_Calculator.xls # FIXME: why? @@ -184,22 +188,35 @@ stdenv.mkDerivation rec { done ''; - preFixup = '' - while IFS= read -r -d ''$'\0' i; do - if ! isELF "$i"; then continue; fi - echo "patching $i..." - if [[ ! $i =~ \.so ]]; then - patchelf \ - --set-interpreter "''$(cat $NIX_CC/nix-support/dynamic-linker)" $i - fi - if [[ $i =~ libcudart ]]; then - patchelf --remove-rpath $i - else - rpath2=$rpath:$lib/lib:$out/jre/lib/amd64/jli:$out/lib:$out/lib64:$out/nvvm/lib:$out/nvvm/lib64 - patchelf --set-rpath "$rpath2" --force-rpath $i - fi - done < <(find $out $lib $doc -type f -print0) - ''; + preFixup = + let rpath = lib.concatStringsSep ":" [ + (lib.makeLibraryPath (runtimeDependencies ++ [ "$lib" "$out" "$out/nvvm" ])) + "${stdenv.cc.cc.lib}/lib64" + "$out/jre/lib/amd64/jli" + "$out/lib64" + "$out/nvvm/lib64" + ]; + in + '' + while IFS= read -r -d $'\0' i; do + if ! isELF "$i"; then continue; fi + echo "patching $i..." + if [[ ! $i =~ \.so ]]; then + patchelf \ + --set-interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" $i + fi + if [[ $i =~ libcudart ]]; then + patchelf --remove-rpath $i + else + patchelf --set-rpath "${rpath}" --force-rpath $i + fi + done < <(find $out $lib $doc -type f -print0) + '' + lib.optionalString (lib.versionAtLeast version "11") '' + for file in $out/target-linux-x64/*.so; do + echo "patching $file..." + patchelf --set-rpath "${rpath}:\$ORIGIN" $file + done + ''; # Set RPATH so that libcuda and other libraries in # /run/opengl-driver(-32)/lib can be found. See the explanation in @@ -208,6 +225,10 @@ stdenv.mkDerivation rec { # --force-rpath prevents changing RPATH (set above) to RUNPATH. postFixup = '' addOpenGLRunpath --force-rpath {$out,$lib}/lib/lib*.so + '' + lib.optionalString (lib.versionAtLeast version "11") '' + addOpenGLRunpath $out/cuda_sanitizer_api/compute-sanitizer/* + addOpenGLRunpath $out/cuda_sanitizer_api/compute-sanitizer/x86/* + addOpenGLRunpath $out/target-linux-x64/* ''; # cuda-gdb doesn't run correctly when not using sandboxing, so diff --git a/pkgs/development/compilers/dotnet/build-dotnet.nix b/pkgs/development/compilers/dotnet/build-dotnet.nix index 55deb594706..bfc2ab7f9b0 100644 --- a/pkgs/development/compilers/dotnet/build-dotnet.nix +++ b/pkgs/development/compilers/dotnet/build-dotnet.nix @@ -1,6 +1,6 @@ { type , version -, sha512 +, srcs }: assert builtins.elem type [ "aspnetcore" "runtime" "sdk"]; @@ -25,17 +25,7 @@ let "dotnet-runtime" else "dotnet-sdk"; - platform = { - x86_64-linux = "linux-x64"; - aarch64-linux = "linux-arm64"; - x86_64-darwin = "osx-x64"; - aarch64-darwin = "osx-arm64"; - }.${stdenv.hostPlatform.system} or (throw "unsupported system: ${stdenv.hostPlatform.system}"); - urls = { - aspnetcore = "https://dotnetcli.azureedge.net/dotnet/aspnetcore/Runtime/${version}/${pname}-${version}-${platform}.tar.gz"; - runtime = "https://dotnetcli.azureedge.net/dotnet/Runtime/${version}/${pname}-${version}-${platform}.tar.gz"; - sdk = "https://dotnetcli.azureedge.net/dotnet/Sdk/${version}/${pname}-${version}-${platform}.tar.gz"; - }; + descriptions = { aspnetcore = "ASP.NET Core Runtime ${version}"; runtime = ".NET Runtime ${version}"; @@ -58,11 +48,8 @@ in stdenv.mkDerivation rec { lttng-ust_2_12 ]); - src = fetchurl { - url = builtins.getAttr type urls; - sha512 = sha512."${stdenv.hostPlatform.system}" or (throw - "Missing hash for host system: ${stdenv.hostPlatform.system}"); - }; + src = fetchurl (srcs."${stdenv.hostPlatform.system}" or (throw + "Missing source (url and hash) for host system: ${stdenv.hostPlatform.system}")); sourceRoot = "."; @@ -90,7 +77,10 @@ in stdenv.mkDerivation rec { ''; setupHook = writeText "dotnet-setup-hook" '' - export HOME=$(mktemp -d) # Dotnet expects a writable home directory for its configuration files + if [ ! -w "$HOME" ]; then + export HOME=$(mktemp -d) # Dotnet expects a writable home directory for its configuration files + fi + export DOTNET_SKIP_FIRST_TIME_EXPERIENCE=1 # Dont try to expand NuGetFallbackFolder to disk export DOTNET_NOLOGO=1 # Disables the welcome message export DOTNET_CLI_TELEMETRY_OPTOUT=1 @@ -99,7 +89,7 @@ in stdenv.mkDerivation rec { meta = with lib; { homepage = "https://dotnet.github.io/"; description = builtins.getAttr type descriptions; - platforms = builtins.attrNames sha512; + platforms = builtins.attrNames srcs; maintainers = with maintainers; [ kuznero ]; license = licenses.mit; }; diff --git a/pkgs/development/compilers/dotnet/default.nix b/pkgs/development/compilers/dotnet/default.nix index c4eabac489d..6ae8240c7f0 100644 --- a/pkgs/development/compilers/dotnet/default.nix +++ b/pkgs/development/compilers/dotnet/default.nix @@ -2,7 +2,7 @@ How to combine packages for use in development: dotnetCombined = with dotnetCorePackages; combinePackages [ sdk_3_1 sdk_5_0 aspnetcore_5_0 ]; -Hashes below are retrived from: +Hashes and urls below are retrieved from: https://dotnet.microsoft.com/download/dotnet */ { callPackage }: @@ -16,98 +16,184 @@ rec { combinePackages = attrs: callPackage (import ./combine-packages.nix attrs) {}; # EOL - sdk_2_1 = throw "Dotnet SDK 2.1 is EOL, please use 3.1 (LTS), 5.0 (Current) or 6.0 (LTS)"; sdk_2_2 = throw "Dotnet SDK 2.2 is EOL, please use 3.1 (LTS), 5.0 (Current) or 6.0 (LTS)"; sdk_3_0 = throw "Dotnet SDK 3.0 is EOL, please use 3.1 (LTS), 5.0 (Current) or 6.0 (LTS)"; - # v3.1 (LTS) - + # v3.1 (lts) aspnetcore_3_1 = buildAspNetCore { version = "3.1.21"; - sha512 = { - x86_64-linux = "f59252166dbfe11a78373226222d6a34484b9132e24283222aea8a950a5e9657da2e4d4e9ff8cbcc2fd7c7705e13bf42a31232a6012d1e247efc718e3d8e2df1"; - aarch64-linux = "f3d014431064362c29361e3d3b33b7aaaffe46e22f324cd42ba6fc6a6d5b712153e9ec82f10cf1bee416360a68fb4520dc9c0b0a8860316c4c9fce75f1adae80"; - x86_64-darwin = "477912671e21c7c61f5666323ad9e9c246550d40b4d127ccc71bcb296c86e07051e3c75251beef11806f198eebd0cd4b36790950f24c730dc6723156c0dc11b5"; + srcs = { + x86_64-linux = { + url = "https://download.visualstudio.microsoft.com/download/pr/c4565012-97e8-4a5a-9edf-8d6c94f0ac5c/dd227c01d532bcb731b026243a51f55f/aspnetcore-runtime-3.1.21-linux-x64.tar.gz"; + sha512 = "f59252166dbfe11a78373226222d6a34484b9132e24283222aea8a950a5e9657da2e4d4e9ff8cbcc2fd7c7705e13bf42a31232a6012d1e247efc718e3d8e2df1"; + }; + aarch64-linux = { + url = "https://download.visualstudio.microsoft.com/download/pr/5d245f70-4e8f-457a-9c4f-d4140136e496/56193e7de38e0f4101eb6f3fd2c60c41/aspnetcore-runtime-3.1.21-linux-arm64.tar.gz"; + sha512 = "f3d014431064362c29361e3d3b33b7aaaffe46e22f324cd42ba6fc6a6d5b712153e9ec82f10cf1bee416360a68fb4520dc9c0b0a8860316c4c9fce75f1adae80"; + }; + x86_64-darwin = { + url = "https://download.visualstudio.microsoft.com/download/pr/dd423a05-c133-464d-a117-d2e73d6dfeb5/a2d7c629802b8a283819a445a3024944/aspnetcore-runtime-3.1.21-osx-x64.tar.gz"; + sha512 = "477912671e21c7c61f5666323ad9e9c246550d40b4d127ccc71bcb296c86e07051e3c75251beef11806f198eebd0cd4b36790950f24c730dc6723156c0dc11b5"; + }; }; }; runtime_3_1 = buildNetRuntime { version = "3.1.21"; - sha512 = { - x86_64-linux = "cc4b2fef46e94df88bf0fc11cb15439e79bd48da524561dffde80d3cd6db218133468ad2f6785803cf0c13f000d95ff71eb258cec76dd8eb809676ec1cb38fac"; - aarch64-linux = "80971125650a2fa0163e39a2de98bc2e871c295b723559e6081a3ab59d99195aa5b794450f8182c5eb4e7e472ca1c13340ef1cc8a5588114c494bbb5981f19c4"; - x86_64-darwin = "049257f680fe7dfb8e98a2ae4da6aa184f171b04b81c506e7a83509e46b1ea81ea6000c4d01c5bed46d5495328c6d9a0eeecbc0dc7c2c698296251fb04b5e855"; + srcs = { + x86_64-linux = { + url = "https://download.visualstudio.microsoft.com/download/pr/286e526e-282b-47e5-afeb-4f99ee481972/495908d6a6019e47249bd05f8346aeb5/dotnet-runtime-3.1.21-linux-x64.tar.gz"; + sha512 = "cc4b2fef46e94df88bf0fc11cb15439e79bd48da524561dffde80d3cd6db218133468ad2f6785803cf0c13f000d95ff71eb258cec76dd8eb809676ec1cb38fac"; + }; + aarch64-linux = { + url = "https://download.visualstudio.microsoft.com/download/pr/45b3ad17-6ce6-4cd6-a975-d4f152203750/c6df44d802c52e65ad5d9c783ccd46ab/dotnet-runtime-3.1.21-linux-arm64.tar.gz"; + sha512 = "80971125650a2fa0163e39a2de98bc2e871c295b723559e6081a3ab59d99195aa5b794450f8182c5eb4e7e472ca1c13340ef1cc8a5588114c494bbb5981f19c4"; + }; + x86_64-darwin = { + url = "https://download.visualstudio.microsoft.com/download/pr/3896eba4-4ef4-47a7-846c-8acb44b15feb/4920ee69b26772423edc686e499da061/dotnet-runtime-3.1.21-osx-x64.tar.gz"; + sha512 = "049257f680fe7dfb8e98a2ae4da6aa184f171b04b81c506e7a83509e46b1ea81ea6000c4d01c5bed46d5495328c6d9a0eeecbc0dc7c2c698296251fb04b5e855"; + }; }; }; sdk_3_1 = buildNetSdk { version = "3.1.415"; - sha512 = { - x86_64-linux = "df7a6d1abed609c382799a8f69f129ec72ce68236b2faecf01aed4c957a40a9cfbbc9126381bf517dff3dbe0e488f1092188582701dd0fef09a68b8c5707c747"; - aarch64-linux = "7a5b9922988bcbde63d39f97e283ca1d373d5521cca0ab8946e2f86deaef6e21f00244228a0d5d8c38c2b9634b38bc7338b61984f0e12dd8fdb8b2e6eed5dd34"; - x86_64-darwin = "e26529714021d1828687c404dd0800c61eb267c9da62ee629b91f5ffa8af77d156911bd3c1a58bf11e5c589cfe4a852a95c14a7cb25f731e92a484348868964d"; + srcs = { + x86_64-linux = { + url = "https://download.visualstudio.microsoft.com/download/pr/6425056e-bfd5-48be-8b00-223c03a4d0f3/08a801489b7f18e9e73a1378082fbe66/dotnet-sdk-3.1.415-linux-x64.tar.gz"; + sha512 = "df7a6d1abed609c382799a8f69f129ec72ce68236b2faecf01aed4c957a40a9cfbbc9126381bf517dff3dbe0e488f1092188582701dd0fef09a68b8c5707c747"; + }; + aarch64-linux = { + url = "https://download.visualstudio.microsoft.com/download/pr/4a78a923-e891-40fe-88d2-4bff2c90519f/126bee4399caeabde4f34f4ace7f44e3/dotnet-sdk-3.1.415-linux-arm64.tar.gz"; + sha512 = "7a5b9922988bcbde63d39f97e283ca1d373d5521cca0ab8946e2f86deaef6e21f00244228a0d5d8c38c2b9634b38bc7338b61984f0e12dd8fdb8b2e6eed5dd34"; + }; + x86_64-darwin = { + url = "https://download.visualstudio.microsoft.com/download/pr/7d663efa-2180-4562-8735-be11d8ba465d/605910e63a687d8c9e72ba108ffb1da4/dotnet-sdk-3.1.415-osx-x64.tar.gz"; + sha512 = "e26529714021d1828687c404dd0800c61eb267c9da62ee629b91f5ffa8af77d156911bd3c1a58bf11e5c589cfe4a852a95c14a7cb25f731e92a484348868964d"; + }; }; }; - # v5.0 (Current) - + # v5.0 (current) aspnetcore_5_0 = buildAspNetCore { version = "5.0.12"; - sha512 = { - x86_64-linux = "0529f23ffa651ac2c2807b70d6e5034f6ae4c88204afdaaa76965ef604d6533f9440d68d9f2cdd3a9f2ca37e9140e6c61a9f9207d430c71140094c7d5c33bf79"; - aarch64-linux = "70570177896943613f0cddeb046ffccaafb1c8245c146383e45fbcfb27779c70dff1ab22c2b13a14bf096173c9279e0a386f61665106a3abb5f623b50281a652"; - x86_64-darwin = "bd9e7dd7f48c220121dde85b3acc4ce7eb2a1944d472f9340276718ef72d033f05fd9a62ffb9de93b8e7633843e731ff1cb5e8c836315f7571f519fdb0a119e1"; + srcs = { + x86_64-linux = { + url = "https://download.visualstudio.microsoft.com/download/pr/ad0a54ca-4b88-4762-a790-aebeaba6b9e7/0f796fb90696d078046d90d8a05c027e/aspnetcore-runtime-5.0.12-linux-x64.tar.gz"; + sha512 = "0529f23ffa651ac2c2807b70d6e5034f6ae4c88204afdaaa76965ef604d6533f9440d68d9f2cdd3a9f2ca37e9140e6c61a9f9207d430c71140094c7d5c33bf79"; + }; + aarch64-linux = { + url = "https://download.visualstudio.microsoft.com/download/pr/bfc8ae06-2830-4082-a09e-63b3c7134096/880a4712d4ba3491c88aa566553c4e8a/aspnetcore-runtime-5.0.12-linux-arm64.tar.gz"; + sha512 = "70570177896943613f0cddeb046ffccaafb1c8245c146383e45fbcfb27779c70dff1ab22c2b13a14bf096173c9279e0a386f61665106a3abb5f623b50281a652"; + }; + x86_64-darwin = { + url = "https://download.visualstudio.microsoft.com/download/pr/06d71ed5-0755-40d6-8b8e-14a24b8a9cb7/47a8b4deda0deecf3658716b642c69bf/aspnetcore-runtime-5.0.12-osx-x64.tar.gz"; + sha512 = "bd9e7dd7f48c220121dde85b3acc4ce7eb2a1944d472f9340276718ef72d033f05fd9a62ffb9de93b8e7633843e731ff1cb5e8c836315f7571f519fdb0a119e1"; + }; }; }; runtime_5_0 = buildNetRuntime { version = "5.0.12"; - sha512 = { - x86_64-linux = "32b5f86db3b1d4c21e3cf616d22f0e4a7374385dac0cf03cdebf3520dcf846460d9677ec1829a180920740a0237d64f6eaa2421d036a67f4fe9fb15d4f6b1db9"; - aarch64-linux = "a8089fad8d21a4b582aa6c3d7162d56a21fee697fd400f050a772f67c2ace5e4196d1c4261d3e861d6dc2e5439666f112c406104d6271e5ab60cda80ef2ffc64"; - x86_64-darwin = "a3160eaec15d0e2b62a4a2cdbb6663ef2e817fd26a3a3b8b3d75c5e3538b2947ff66eaddafb39cc297b9f087794d5fbd5a0e097ec8522ab6fea562f230055264"; + srcs = { + x86_64-linux = { + url = "https://download.visualstudio.microsoft.com/download/pr/781b7ae6-166c-4114-97f8-926d2bf74d34/fe51479e3138d672c512ef0322be23d3/dotnet-runtime-5.0.12-linux-x64.tar.gz"; + sha512 = "32b5f86db3b1d4c21e3cf616d22f0e4a7374385dac0cf03cdebf3520dcf846460d9677ec1829a180920740a0237d64f6eaa2421d036a67f4fe9fb15d4f6b1db9"; + }; + aarch64-linux = { + url = "https://download.visualstudio.microsoft.com/download/pr/7c342ad2-2dae-471b-ae46-c0c820321c1f/a480ad8ca0bc826a48c9b1e56efd972b/dotnet-runtime-5.0.12-linux-arm64.tar.gz"; + sha512 = "a8089fad8d21a4b582aa6c3d7162d56a21fee697fd400f050a772f67c2ace5e4196d1c4261d3e861d6dc2e5439666f112c406104d6271e5ab60cda80ef2ffc64"; + }; + x86_64-darwin = { + url = "https://download.visualstudio.microsoft.com/download/pr/8f990fa6-6b13-40ad-95f6-383391ff3d91/7531048d16c01efdf3885da367aa8b89/dotnet-runtime-5.0.12-osx-x64.tar.gz"; + sha512 = "a3160eaec15d0e2b62a4a2cdbb6663ef2e817fd26a3a3b8b3d75c5e3538b2947ff66eaddafb39cc297b9f087794d5fbd5a0e097ec8522ab6fea562f230055264"; + }; }; }; sdk_5_0 = buildNetSdk { version = "5.0.403"; - sha512 = { - x86_64-linux = "7ba5f7f898dba64ea7027dc66184d60ac5ac35fabe750bd509711628442e098413878789fad5766be163fd2867cf22ef482a951e187cf629bbc6f54dd9293a4a"; - aarch64-linux = "6cc705fe45c0d8df6a493eb2923539ef5b62d048d5218859bf3af06fb3934c9c716c16f98ee1a28c818d77adff8430bf39a2ae54a59a1468b704b4ba192234ac"; - x86_64-darwin = "70beea069db182cca211cf04d7a80f3d6a3987d76cbd2bb60590ee76b93a4041b1b86ad91057cddbbaddd501c72327c1bc0a5fec630f38063f84bd60ba2b4792"; + srcs = { + x86_64-linux = { + url = "https://download.visualstudio.microsoft.com/download/pr/b77183fa-c045-4058-82c5-d37742ed5f2d/ddaccef3e448a6df348cae4d1d271339/dotnet-sdk-5.0.403-linux-x64.tar.gz"; + sha512 = "7ba5f7f898dba64ea7027dc66184d60ac5ac35fabe750bd509711628442e098413878789fad5766be163fd2867cf22ef482a951e187cf629bbc6f54dd9293a4a"; + }; + aarch64-linux = { + url = "https://download.visualstudio.microsoft.com/download/pr/91015c72-ce5a-4840-9e87-5bfa4bb80224/b39692ac418d790ff7a2e092eb07de98/dotnet-sdk-5.0.403-linux-arm64.tar.gz"; + sha512 = "6cc705fe45c0d8df6a493eb2923539ef5b62d048d5218859bf3af06fb3934c9c716c16f98ee1a28c818d77adff8430bf39a2ae54a59a1468b704b4ba192234ac"; + }; + x86_64-darwin = { + url = "https://download.visualstudio.microsoft.com/download/pr/5ccdb916-531f-4064-84e8-5475b273a4de/80dcfa0c2eb528f8b0e7c313ed36f4f1/dotnet-sdk-5.0.403-osx-x64.tar.gz"; + sha512 = "70beea069db182cca211cf04d7a80f3d6a3987d76cbd2bb60590ee76b93a4041b1b86ad91057cddbbaddd501c72327c1bc0a5fec630f38063f84bd60ba2b4792"; + }; }; }; - # v6.0 (LTS) - + # v6.0 (lts) aspnetcore_6_0 = buildAspNetCore { - version = "6.0.0"; - sha512 = { - x86_64-linux = "6a1ae878efdc9f654e1914b0753b710c3780b646ac160fb5a68850b2fd1101675dc71e015dbbea6b4fcf1edac0822d3f7d470e9ed533dd81d0cfbcbbb1745c6c"; - aarch64-linux = "e61eade344b686180b8a709229d6b3180ea6f085523e5e4e4b0d23dd00cf9edce3e51a920c986b1bab7d04d8cab5aae219c3b533b6feb84b32a02810936859b0"; - x86_64-darwin = "76029272ff50fbf9fcc513109b98c0db5f74dbf970c1380be4dfac0dae7558824d68a167d0a8ceb39042ff4a7ca973cdcc15afed2d1ffef55b0adba8e40c9073"; - aarch64-darwin = "e459ddf33243d680baecc5378b9c4182daf42b8c36a9a996205d91146a614d048a385f953c43727350ad55b1221c5f5d43b383d03e3883e862bf12faeaa02dfb"; + version = "6.0.3"; + srcs = { + x86_64-linux = { + url = "https://download.visualstudio.microsoft.com/download/pr/3af854b6-80fb-425a-972f-c7f0d693bf1b/cd458a4feae5a98646ee12a14ab34151/aspnetcore-runtime-6.0.3-linux-x64.tar.gz"; + sha512 = "9ea54220468d922ef2c40433c4b8c70df6c60d8ea63a3ac1ff5e5ce712606ae5cfe1e57d321b87eff1b5dc34d7823a4b4b964180587383f22d9a0ff5bb3a8c88"; + }; + aarch64-linux = { + url = "https://download.visualstudio.microsoft.com/download/pr/1e7933b2-1202-4aeb-bb70-a6f9cecac61a/b12b5666b3d4cf508f8575581abd4033/aspnetcore-runtime-6.0.3-linux-arm64.tar.gz"; + sha512 = "745586b64d3e01f856c366821f6fb8ca97c55b2a90ba36d528fdf99c98938574805153e7d4fff0560afe8382bea14b35ddeba391a2dc2328285f02e125c9b702"; + }; + x86_64-darwin = { + url = "https://download.visualstudio.microsoft.com/download/pr/2cfe2a02-dd59-4cb7-9788-76c620eaa0ff/dfd0d449289a042be9bc62e4466bf350/aspnetcore-runtime-6.0.3-osx-x64.tar.gz"; + sha512 = "bda83cf36fc9aa62ff3e16a26b5f8f37efa3221ab826467fe26f3072517a428c64e44bc52f8a90f5c77bc60eeeddb8c3d59d2a509999edce3b51b835dd7edf83"; + }; + aarch64-darwin = { + url = "https://download.visualstudio.microsoft.com/download/pr/d7cf4456-d9ba-4a31-98e9-4681e1b0d8b8/b9c4cfded00e9940756e62c4486f64c6/aspnetcore-runtime-6.0.3-osx-arm64.tar.gz"; + sha512 = "03d1d4e8a8370856120e045ed4a83b3383d00fb56b5fdaf7db0de8bab5e3de60d03c02deaed6f72bde0d6b0e12511fe1202c4e2c25fdeeb489ad61a5902d71d3"; + }; }; }; runtime_6_0 = buildNetRuntime { - version = "6.0.0"; - sha512 = { - x86_64-linux = "7cc8d93f9495b516e1b33bf82af3af605f1300bcfeabdd065d448cc126bd97ab4da5ec5e95b7775ee70ab4baf899ff43671f5c6f647523fb41cda3d96f334ae5"; - aarch64-linux = "b0f0f2b4dc0a31b06cc3af541a3c44260317ca3a4414a5d50e6cf859d93821b3d2c2246baec9f96004aeb1eb0e353631283b11cf3acc134d4694f0ed71c9503d"; - x86_64-darwin = "d6842bddd9652dd7ad1d8156c3e9012f9412b3d89b4cfc0b6d644fd76744298aa5ed2cde8a80d14bb2b247ee162bae255875ee2ca62033a422dacb7adaeece2d"; - aarch64-darwin = "5cfc3c8a70f0e90f09047d3eeccd699e7210756b60fabbf1a30d6fdc121df084e5d8c3210557273739d5421f031dc9e4d07c611406734ca0671585de6e28e028"; + version = "6.0.3"; + srcs = { + x86_64-linux = { + url = "https://download.visualstudio.microsoft.com/download/pr/4e766615-57e6-4b1d-a574-25eeb7a71107/9f95f74c33711e085302ffd644ef86ee/dotnet-runtime-6.0.3-linux-x64.tar.gz"; + sha512 = "083d9e6e72f0d8f175b341f5229277374e630c5358cfd3602fe611aeef59abec715edbe18d62135a5d13a650e99ef49f19b17e8c81663d0b5bee757519bec894"; + }; + aarch64-linux = { + url = "https://download.visualstudio.microsoft.com/download/pr/89b5d16e-cb5e-4e6c-90f6-7332e93d20ae/7a0146aa4fc59154a3256c5196a622c7/dotnet-runtime-6.0.3-linux-arm64.tar.gz"; + sha512 = "f0f9fb191054dea2e4151a86c3de1a11ce574cc843cde429850db0996c7df403dfa348a277f1af96f13fec718ae77f3be75379ed3829b027e561564ff22c7258"; + }; + x86_64-darwin = { + url = "https://download.visualstudio.microsoft.com/download/pr/1f354e35-ff3f-4de7-b6be-f5001b7c3976/b7c8814ab28a6f00f063440e63903105/dotnet-runtime-6.0.3-osx-x64.tar.gz"; + sha512 = "98c457cbc0ac8f5f0acd7807bb45726b78e87d4f554fd30123cc8d9568b5341cc5bba16c8e4c85537ec4798d7e4d7f2f11701d2045b124f1b36bca75d80458e8"; + }; + aarch64-darwin = { + url = "https://download.visualstudio.microsoft.com/download/pr/03047609-269e-4ca6-bf2e-406c496b27e3/3b19ad4d3fbc5d9a92f436db13e9e3d1/dotnet-runtime-6.0.3-osx-arm64.tar.gz"; + sha512 = "1debd4acab3c6408c849323e6dfba28a626850c40f93a0debe46c54f0c0b39526f4118d5b2bcf0307efeba0bc2656a92187a685400095ae078227698a0aabfb3"; + }; }; }; sdk_6_0 = buildNetSdk { - version = "6.0.100"; - sha512 = { - x86_64-linux = "cb0d174a79d6294c302261b645dba6a479da8f7cf6c1fe15ae6998bc09c5e0baec810822f9e0104e84b0efd51fdc0333306cb2a0a6fcdbaf515a8ad8cf1af25b"; - aarch64-linux = "e5983c1c599d6dc7c3c7496b9698e47c68247f04a5d0d1e3162969d071471297bce1c2fd3a1f9fb88645006c327ae79f880dcbdd8eefc9166fd717331f2716e7"; - x86_64-darwin = "6e2f502a84f712d60daed31c4076c5b55ee98a03259adf4bdc01659afcac2be7050e5a404dcda35fdc598bf5cd766772c08abc483ed94f6985c9501057b0186a"; - aarch64-darwin = "92ead34c7e082dbed2786db044385ddfc68673e096a3edf64bc0bf70c76ea1c5cb816cde99aab2d8c528a44c86593b812877d075486dd0ae565f0e01e9eaa562"; + version = "6.0.201"; + srcs = { + x86_64-linux = { + url = "https://download.visualstudio.microsoft.com/download/pr/c505a449-9ecf-4352-8629-56216f521616/bd6807340faae05b61de340c8bf161e8/dotnet-sdk-6.0.201-linux-x64.tar.gz"; + sha512 = "a4d96b6ca2abb7d71cc2c64282f9bd07cedc52c03d8d6668346ae0cd33a9a670d7185ab0037c8f0ecd6c212141038ed9ea9b19a188d1df2aae10b2683ce818ce"; + }; + aarch64-linux = { + url = "https://download.visualstudio.microsoft.com/download/pr/33c6e1e3-e81f-44e8-9de8-91934fba3c94/9105f95a9e37cda6bd0c33651be2b90a/dotnet-sdk-6.0.201-linux-arm64.tar.gz"; + sha512 = "2ea443c27ab7ca9d566e4df0e842063642394fd22fe2a8620371171c8207ae6a4a72c8c54fc6af5b6b053be25cf9c09a74504f08b963e5bd84544619aed9afc2"; + }; + x86_64-darwin = { + url = "https://download.visualstudio.microsoft.com/download/pr/cecaa095-3254-4987-b105-6bb9b594a89c/df29881aea827565a96d5e47dc337749/dotnet-sdk-6.0.201-osx-x64.tar.gz"; + sha512 = "1df27ca5a1db1a8712acd95083aa00ec7b266618770e164d6460d0cf781b3643a7365ef35232140c83b588f7aa4e2d7e5f5b6d627f1851b2d0ec197172f9fb4d"; + }; + aarch64-darwin = { + url = "https://download.visualstudio.microsoft.com/download/pr/628be5e6-7fc7-42b6-99c9-ea46fbcc3d14/d94bb4198af2d5013c75b1c70751ec8f/dotnet-sdk-6.0.201-osx-arm64.tar.gz"; + sha512 = "0796a81339788fbc160885548983889dcffd26a5c0ac935b497b290ae99920386f3929cebfbef9bb22f644a207ba329cf8b90ffe7bbb49d1d99d0d8a05ce50c9"; + }; }; }; } diff --git a/pkgs/development/compilers/dotnet/print-hashes.sh b/pkgs/development/compilers/dotnet/print-hashes.sh index 5c97c313233..966f0a9c061 100755 --- a/pkgs/development/compilers/dotnet/print-hashes.sh +++ b/pkgs/development/compilers/dotnet/print-hashes.sh @@ -1,69 +1,110 @@ #!/usr/bin/env nix-shell -#!nix-shell -i bash -p curl +#!nix-shell -i bash -p curl jq set -eu -if [[ $# -lt 1 ]]; then - echo \"usage: $0 version\" >&2 +release () { + local content="$1" + local version="$2" + + jq -r '.releases[] | select(."release-version" == "'"$version"'")' <<< "$content" +} + +release_files () { + local release="$1" + local type="$2" + + jq -r '[."'"$type"'".files[] | select(.name | test("^.*.tar.gz$"))]' <<< "$release" +} + +release_platform_attr () { + local release_files="$1" + local platform="$2" + local attr="$3" + + jq -r '.[] | select(.rid == "'"$platform"'") | ."'"$attr"'"' <<< "$release_files" +} + +platform_sources () { + local release_files="$1" + local platforms=( \ + "x86_64-linux linux-x64" \ + "aarch64-linux linux-arm64" \ + "x86_64-darwin osx-x64" \ + "aarch64-darwin osx-arm64" \ + ) + + echo "srcs = {" + for kv in "${platforms[@]}"; do + local nix_platform=${kv%% *} + local ms_platform=${kv##* } + + local url=$(release_platform_attr "$release_files" "$ms_platform" url) + local hash=$(release_platform_attr "$release_files" "$ms_platform" hash) + + [[ -z "$url" || -z "$hash" ]] && continue + echo " $nix_platform = { + url = \"$url\"; + sha512 = \"$hash\"; + }; " + done + echo " };" +} + +main () { + pname=$(basename "$0") + if [[ ! "$*" =~ ^.*[0-9]{1,}\.[0-9]{1,}.*$ ]]; then + echo "Usage: $pname [sem-versions] +Get updated dotnet src (platform - url & sha512) expressions for specified versions + +Examples: + $pname 3.1.21 5.0.12 - specific x.y.z versions + $pname 3.1 5.0 6.0 - latest x.y versions +" >&2 exit 1 -fi - -VERSION=$1 -HASHFILE=$(mktemp /tmp/dotnet.hashes.XXXXXXXX) -trap "rm -f $HASHFILE" EXIT - -curl -L https://dotnetcli.blob.core.windows.net/dotnet/checksums/$VERSION-sha.txt -o $HASHFILE - -ASPNETCORE_VERSION=$(grep aspnetcore-runtime- $HASHFILE | grep -- -linux-x64.tar.gz | tail -n -1 | sed -e 's:.*aspnetcore-runtime-::' -e 's:-linux-x64.tar.gz.*$::' ) -ASPNETCORE_HASH_LINUX_X64=$(grep aspnetcore-runtime- $HASHFILE | grep -- -linux-x64.tar.gz | cut -d ' ' -f 1) -ASPNETCORE_HASH_LINUX_ARM64=$(grep aspnetcore-runtime- $HASHFILE | grep -- -linux-arm64.tar.gz | cut -d ' ' -f 1) -ASPNETCORE_HASH_OSX_X64=$(grep aspnetcore-runtime- $HASHFILE | grep -- -osx-x64.tar.gz | cut -d ' ' -f 1) -ASPNETCORE_HASH_OSX_ARM64=$(grep aspnetcore-runtime- $HASHFILE | grep -- -osx-arm64.tar.gz | cut -d ' ' -f 1) - -RUNTIME_VERSION=$(grep dotnet-runtime- $HASHFILE | grep -- -linux-x64.tar.gz | tail -n -1 | sed -e 's:.*dotnet-runtime-::' -e 's:-linux-x64.tar.gz.*$::' ) -RUNTIME_HASH_LINUX_X64=$(grep dotnet-runtime- $HASHFILE | grep -- -linux-x64.tar.gz | cut -d ' ' -f 1) -RUNTIME_HASH_LINUX_ARM64=$(grep dotnet-runtime- $HASHFILE | grep -- -linux-arm64.tar.gz | cut -d ' ' -f 1) -RUNTIME_HASH_OSX_X64=$(grep dotnet-runtime- $HASHFILE | grep -- -osx-x64.tar.gz | cut -d ' ' -f 1) -RUNTIME_HASH_OSX_ARM64=$(grep dotnet-runtime- $HASHFILE | grep -- -osx-arm64.tar.gz | cut -d ' ' -f 1) - -# dotnet-sdk has multiple entries in file, but the latest is the newest -SDK_VERSION=$(grep dotnet-sdk- $HASHFILE | grep -- -linux-x64.tar.gz | tail -n -1 | sed -e 's:.*dotnet-sdk-::' -e 's:-linux-x64.tar.gz.*$::' ) -SDK_HASH_LINUX_X64=$(grep dotnet-sdk- $HASHFILE | grep -- -linux-x64.tar.gz | tail -n 1 | cut -d ' ' -f 1) -SDK_HASH_LINUX_ARM64=$(grep dotnet-sdk- $HASHFILE | grep -- -linux-arm64.tar.gz | tail -n 1 | cut -d ' ' -f 1) -SDK_HASH_OSX_X64=$(grep dotnet-sdk- $HASHFILE | grep -- -osx-x64.tar.gz | tail -n 1 | cut -d ' ' -f 1) -SDK_HASH_OSX_ARM64=$(grep dotnet-sdk- $HASHFILE | grep -- -osx-arm64.tar.gz | tail -n 1 | cut -d ' ' -f 1) - -V=${VERSION/./_} -MAJOR_MINOR_VERSION=${V%%.*} - -echo """ - aspnetcore_${MAJOR_MINOR_VERSION} = buildAspNetCore { - version = \"${ASPNETCORE_VERSION}\"; - sha512 = { - x86_64-linux = \"${ASPNETCORE_HASH_LINUX_X64}\"; - aarch64-linux = \"${ASPNETCORE_HASH_LINUX_ARM64}\"; - x86_64-darwin = \"${ASPNETCORE_HASH_OSX_X64}\"; - aarch64-darwin = \"${ASPNETCORE_HASH_OSX_ARM64}\"; - }; - }; + fi + + for sem_version in "$@"; do + patch_specified=false + if [[ "$sem_version" =~ ^[0-9]{1,}\.[0-9]{1,}\.[0-9]{1,}$ ]]; then + patch_specified=true + elif [[ ! "$sem_version" =~ ^[0-9]{1,}\.[0-9]{1,}$ ]]; then + continue + fi + + major_minor=$(sed 's/^\([0-9]*\.[0-9]*\).*$/\1/' <<< "$sem_version") + content=$(curl -sL https://dotnetcli.blob.core.windows.net/dotnet/release-metadata/"$major_minor"/releases.json) + major_minor_patch=$([ "$patch_specified" == true ] && echo "$sem_version" || jq -r '."latest-release"' <<< "$content") - runtime_${MAJOR_MINOR_VERSION} = buildNetRuntime { - version = \"${RUNTIME_VERSION}\"; - sha512 = { - x86_64-linux = \"${RUNTIME_HASH_LINUX_X64}\"; - aarch64-linux = \"${RUNTIME_HASH_LINUX_ARM64}\"; - x86_64-darwin = \"${RUNTIME_HASH_OSX_X64}\"; - aarch64-darwin = \"${RUNTIME_HASH_OSX_ARM64}\"; - }; + release_content=$(release "$content" "$major_minor_patch") + aspnetcore_version=$(jq -r '."aspnetcore-runtime".version' <<< "$release_content") + runtime_version=$(jq -r '.runtime.version' <<< "$release_content") + sdk_version=$(jq -r '.sdk.version' <<< "$release_content") + + aspnetcore_files="$(release_files "$release_content" "aspnetcore-runtime")" + runtime_files="$(release_files "$release_content" "runtime")" + sdk_files="$(release_files "$release_content" "sdk")" + + major_minor_underscore=${major_minor/./_} + channel_version=$(jq -r '."channel-version"' <<< "$content") + support_phase=$(jq -r '."support-phase"' <<< "$content") + echo " + # v$channel_version ($support_phase) + aspnetcore_$major_minor_underscore = buildAspNetCore { + version = \"${aspnetcore_version}\"; + $(platform_sources "$aspnetcore_files") }; - sdk_${MAJOR_MINOR_VERSION} = buildNetSdk { - version = \"${SDK_VERSION}\"; - sha512 = { - x86_64-linux = \"${SDK_HASH_LINUX_X64}\"; - aarch64-linux = \"${SDK_HASH_LINUX_ARM64}\"; - x86_64-darwin = \"${SDK_HASH_OSX_X64}\"; - aarch64-darwin = \"${SDK_HASH_OSX_ARM64}\"; - }; + runtime_$major_minor_underscore = buildNetRuntime { + version = \"${runtime_version}\"; + $(platform_sources "$runtime_files") }; -""" + + sdk_$major_minor_underscore = buildNetSdk { + version = \"${sdk_version}\"; + $(platform_sources "$sdk_files") + }; " + done +} + +main "$@" diff --git a/pkgs/development/compilers/go/1.16.nix b/pkgs/development/compilers/go/1.16.nix index c30abc44fe2..add1e70bbe3 100644 --- a/pkgs/development/compilers/go/1.16.nix +++ b/pkgs/development/compilers/go/1.16.nix @@ -45,7 +45,8 @@ let "riscv64" = "riscv64"; "s390x" = "s390x"; "powerpc64le" = "ppc64le"; - }.${platform.parsed.cpu.name} or (throw "Unsupported system"); + "mips64el" = "mips64le"; + }.${platform.parsed.cpu.name} or (throw "Unsupported system: ${platform.parsed.cpu.name}"); # We need a target compiler which is still runnable at build time, # to handle the cross-building case where build != host == target @@ -168,6 +169,7 @@ stdenv.mkDerivation rec { ./creds-test.patch ./go-1.9-skip-flaky-19608.patch ./go-1.9-skip-flaky-20072.patch + ./skip-chown-tests-1.16.patch ./skip-external-network-tests-1.16.patch ./skip-nohup-tests.patch ./skip-cgo-tests-1.15.patch diff --git a/pkgs/development/compilers/go/1.17.nix b/pkgs/development/compilers/go/1.17.nix index 4b2a3d39a98..69537dc899e 100644 --- a/pkgs/development/compilers/go/1.17.nix +++ b/pkgs/development/compilers/go/1.17.nix @@ -45,7 +45,8 @@ let "riscv64" = "riscv64"; "s390x" = "s390x"; "powerpc64le" = "ppc64le"; - }.${platform.parsed.cpu.name} or (throw "Unsupported system"); + "mips64el" = "mips64le"; + }.${platform.parsed.cpu.name} or (throw "Unsupported system: ${platform.parsed.cpu.name}"); # We need a target compiler which is still runnable at build time, # to handle the cross-building case where build != host == target @@ -168,6 +169,7 @@ stdenv.mkDerivation rec { ./creds-test.patch ./go-1.9-skip-flaky-19608.patch ./go-1.9-skip-flaky-20072.patch + ./skip-chown-tests-1.16.patch ./skip-external-network-tests-1.16.patch ./skip-nohup-tests.patch ./skip-cgo-tests-1.15.patch diff --git a/pkgs/development/compilers/go/1.18.nix b/pkgs/development/compilers/go/1.18.nix index 17c31051999..a4cb013d94f 100644 --- a/pkgs/development/compilers/go/1.18.nix +++ b/pkgs/development/compilers/go/1.18.nix @@ -45,7 +45,8 @@ let "riscv64" = "riscv64"; "s390x" = "s390x"; "powerpc64le" = "ppc64le"; - }.${platform.parsed.cpu.name} or (throw "Unsupported system"); + "mips64el" = "mips64le"; + }.${platform.parsed.cpu.name} or (throw "Unsupported system: ${platform.parsed.cpu.name}"); # We need a target compiler which is still runnable at build time, # to handle the cross-building case where build != host == target @@ -54,11 +55,11 @@ in stdenv.mkDerivation rec { pname = "go"; - version = "1.18rc1"; + version = "1.18"; src = fetchurl { url = "https://go.dev/dl/go${version}.src.tar.gz"; - sha256 = "sha256-XOx6ZlMAj6hfiCGzNmXeN74om3oC8X829wWojEOYC7g="; + sha256 = "sha256-OPQj20zINIg/K1I0QoL6ejn7uTZQ3GKhH98L5kCb2tY="; }; # perl is used for testing go vet diff --git a/pkgs/development/compilers/inklecate/deps-darwin.nix b/pkgs/development/compilers/inklecate/deps-darwin.nix index b8aaefebc5b..bd7e4399c95 100644 --- a/pkgs/development/compilers/inklecate/deps-darwin.nix +++ b/pkgs/development/compilers/inklecate/deps-darwin.nix @@ -1,6 +1,6 @@ { fetchNuGet }: [ (fetchNuGet { pname = "Microsoft.AspNetCore.App.Ref"; version = "3.1.10"; sha256 = "0xn4zh7shvijqlr03fqsmps6gz856isd9bg9rk4z2c4599ggal77"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-x64"; version = "3.1.21"; sha256 = "1s5g9gk0hvs268q2zpc32m0my2m2ivlmsmza86797a9vkxr6pzw6"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.osx-x64"; version = "3.1.23"; sha256 = "0r2jd4ys31sgp2zcf8lzkji1xkyaxzgrkrh5rkk7p3r8b5f7fkcv"; }) (fetchNuGet { pname = "Microsoft.NETCore.App.Ref"; version = "3.1.0"; sha256 = "08svsiilx9spvjamcnjswv0dlpdrgryhr3asdz7cvnl914gjzq4y"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.1.0"; sha256 = "08vh1r12g6ykjygq5d3vq09zylgb84l63k49jc4v8faw9g93iqqm"; }) (fetchNuGet { pname = "Microsoft.NETCore.Targets"; version = "1.1.0"; sha256 = "193xwf33fbm0ni3idxzbr5fdq3i2dlfgihsac9jj7whj0gd902nh"; }) diff --git a/pkgs/development/compilers/inklecate/deps-linux.nix b/pkgs/development/compilers/inklecate/deps-linux.nix index 8f26b91eeac..1d5345147ed 100644 --- a/pkgs/development/compilers/inklecate/deps-linux.nix +++ b/pkgs/development/compilers/inklecate/deps-linux.nix @@ -1,6 +1,6 @@ { fetchNuGet }: [ (fetchNuGet { pname = "Microsoft.AspNetCore.App.Ref"; version = "3.1.10"; sha256 = "0xn4zh7shvijqlr03fqsmps6gz856isd9bg9rk4z2c4599ggal77"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-x64"; version = "3.1.21"; sha256 = "01kbhi29lhv6mg1zfsyakz3z8hfbxnc0kxy0fczl8xqviik9svx7"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-x64"; version = "3.1.23"; sha256 = "09cy79swsmrfczv92wmxrwin7djpdl22yzhriac7r1xcg2sc36yk"; }) (fetchNuGet { pname = "Microsoft.NETCore.App.Ref"; version = "3.1.0"; sha256 = "08svsiilx9spvjamcnjswv0dlpdrgryhr3asdz7cvnl914gjzq4y"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.1.0"; sha256 = "08vh1r12g6ykjygq5d3vq09zylgb84l63k49jc4v8faw9g93iqqm"; }) (fetchNuGet { pname = "Microsoft.NETCore.Targets"; version = "1.1.0"; sha256 = "193xwf33fbm0ni3idxzbr5fdq3i2dlfgihsac9jj7whj0gd902nh"; }) diff --git a/pkgs/development/compilers/llvm/13/clang/add-nostdlibinc-flag.patch b/pkgs/development/compilers/llvm/13/clang/add-nostdlibinc-flag.patch new file mode 100644 index 00000000000..8007ba05f6e --- /dev/null +++ b/pkgs/development/compilers/llvm/13/clang/add-nostdlibinc-flag.patch @@ -0,0 +1,18 @@ +diff --git a/lib/Driver/Driver.cpp b/lib/Driver/Driver.cpp +index 94a7553e273b..8a1d455950b2 100644 +--- a/lib/Driver/Driver.cpp ++++ b/lib/Driver/Driver.cpp +@@ -412,6 +412,13 @@ DerivedArgList *Driver::TranslateInputArgs(const InputArgList &Args) const { + } + #endif + ++ { ++ Arg *A = DAL->MakeFlagArg(/*BaseArg=*/nullptr, ++ Opts.getOption(options::OPT_nostdlibinc)); ++ A->claim(); ++ DAL->append(A); ++ } ++ + return DAL; + } + diff --git a/pkgs/development/compilers/llvm/13/clang/default.nix b/pkgs/development/compilers/llvm/13/clang/default.nix index 6c227f1ae72..62b9e0470a6 100644 --- a/pkgs/development/compilers/llvm/13/clang/default.nix +++ b/pkgs/development/compilers/llvm/13/clang/default.nix @@ -42,6 +42,7 @@ let # mis-compilation in firefox. # See: https://bugzilla.mozilla.org/show_bug.cgi?id=1741454 ./revert-malloc-alignment-assumption.patch + ./add-nostdlibinc-flag.patch (substituteAll { src = ../../clang-11-12-LLVMgold-path.patch; libllvmLibdir = "${libllvm.lib}/lib"; @@ -51,10 +52,6 @@ let postPatch = '' (cd tools && ln -s ../../clang-tools-extra extra) - sed -i -e 's/DriverArgs.hasArg(options::OPT_nostdlibinc)/true/' \ - -e 's/Args.hasArg(options::OPT_nostdlibinc)/true/' \ - lib/Driver/ToolChains/*.cpp - # Patch for standalone doc building sed -i '1s,^,find_package(Sphinx REQUIRED)\n,' docs/CMakeLists.txt '' + lib.optionalString stdenv.hostPlatform.isMusl '' diff --git a/pkgs/development/compilers/llvm/13/default.nix b/pkgs/development/compilers/llvm/13/default.nix index be5e9404cdd..874be111ade 100644 --- a/pkgs/development/compilers/llvm/13/default.nix +++ b/pkgs/development/compilers/llvm/13/default.nix @@ -18,7 +18,7 @@ }: let - release_version = "13.0.0"; + release_version = "13.0.1"; candidate = ""; # empty or "rcN" dash-candidate = lib.optionalString (candidate != "") "-${candidate}"; rev = ""; # When using a Git commit @@ -30,7 +30,7 @@ let owner = "llvm"; repo = "llvm-project"; rev = if rev != "" then rev else "llvmorg-${version}"; - sha256 = "0cjl0vssi4y2g4nfr710fb6cdhxmn5r0vis15sf088zsc5zydfhw"; + sha256 = "06dv6h5dmvzdxbif2s8njki6h32796v368dyb5945x8gjj72xh7k"; }; llvm_meta = { diff --git a/pkgs/development/compilers/open-watcom/v2.nix b/pkgs/development/compilers/open-watcom/v2.nix index b521aaef106..dc2af6e7835 100644 --- a/pkgs/development/compilers/open-watcom/v2.nix +++ b/pkgs/development/compilers/open-watcom/v2.nix @@ -12,14 +12,14 @@ stdenv.mkDerivation rec { pname = "open-watcom-v2"; - version = "unstable-2022-02-22"; + version = "unstable-2022-03-14"; name = "${pname}-unwrapped-${version}"; src = fetchFromGitHub { owner = "open-watcom"; repo = "open-watcom-v2"; - rev = "9e25b3d6b8066f09b4f7131a31de1cf2af691e9a"; - sha256 = "1w336070kmhc6cmn2aqr8vm0fmw3yza2n0w4asvs2kqxjgmbn6i2"; + rev = "22627ccc1bd3de70aff9ac056e0dc9ecf7f7b6ec"; + sha256 = "khy/fhmQjTGKfx6iOUBt+ySwpEx0df/7meyNvBnJAPY="; }; postPatch = '' diff --git a/pkgs/development/compilers/qbe/default.nix b/pkgs/development/compilers/qbe/default.nix index 52397f78b8a..80182fc9de6 100644 --- a/pkgs/development/compilers/qbe/default.nix +++ b/pkgs/development/compilers/qbe/default.nix @@ -6,12 +6,12 @@ stdenv.mkDerivation rec { pname = "qbe"; - version = "unstable-2021-12-05"; + version = "unstable-2022-03-17"; src = fetchgit { url = "git://c9x.me/qbe.git"; - rev = "367c8215d99054892740ad74c690b106c45ebf60"; - sha256 = "sha256-xhTEiFR1RXMHtxmXlRof3O8monXEjstyWP3GClZmMuU="; + rev = "c6b41eb8c8cece8266b2173a83216e1ce77eb2be"; + sha256 = "sha256-vpNZNED+C9VMzWyyyntQuBgTvbpZpJ/EwOztdOEP7vI="; }; makeFlags = [ "PREFIX=$(out)" ]; diff --git a/pkgs/development/compilers/rust/print-hashes.sh b/pkgs/development/compilers/rust/print-hashes.sh index ebf8d900bb3..dd2c116a341 100755 --- a/pkgs/development/compilers/rust/print-hashes.sh +++ b/pkgs/development/compilers/rust/print-hashes.sh @@ -19,6 +19,7 @@ PLATFORMS=( aarch64-apple-darwin powerpc64le-unknown-linux-gnu riscv64gc-unknown-linux-gnu + mips64el-unknown-linux-gnuabi64 ) BASEURL=https://static.rust-lang.org/dist VERSION=${1:-} diff --git a/pkgs/development/compilers/vala/default.nix b/pkgs/development/compilers/vala/default.nix index 1dc910c6222..72512a1202f 100644 --- a/pkgs/development/compilers/vala/default.nix +++ b/pkgs/development/compilers/vala/default.nix @@ -90,8 +90,8 @@ in rec { }; vala_0_54 = generic { - version = "0.54.6"; - sha256 = "SdYNlqP99sQoc5dEK8bW2Vv0CqffZ47kkSjEsRum5Gk="; + version = "0.54.7"; + sha256 = "Ygecof8C5dF65yqppa3GGuav3P67DZ8GBjo2776soMc="; }; vala = vala_0_54; diff --git a/pkgs/development/dotnet-modules/python-language-server/default.nix b/pkgs/development/dotnet-modules/python-language-server/default.nix index 420475806a0..a433840b7bc 100644 --- a/pkgs/development/dotnet-modules/python-language-server/default.nix +++ b/pkgs/development/dotnet-modules/python-language-server/default.nix @@ -10,13 +10,13 @@ buildDotnetModule rec { pname = "python-language-server"; - version = "2021-09-08"; + version = "2022-02-18"; src = fetchFromGitHub { owner = "microsoft"; repo = "python-language-server"; - rev = "26ea18997f45f7d7bc5a3c5a9efc723a8dbb02fa"; - sha256 = "1m8pf9k20wy4fzv27v3bswvc8s01ag6ka2qm9nn6bgq0s0lq78mh"; + rev = "52c1afd34b5acb0b44597bb8681232876fe94084"; + sha256 = "05s8mwi3dqzjghgpr1mfs1b7cgrq818bbj1v7aly6axc8c2n4gny"; }; projectFile = "src/LanguageServer/Impl/Microsoft.Python.LanguageServer.csproj"; diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml index b3cac2e3973..038060a2136 100644 --- a/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml +++ b/pkgs/development/haskell-modules/configuration-hackage2nix/broken.yaml @@ -3703,7 +3703,6 @@ broken-packages: - persistent-discover - persistent-documentation - persistent-equivalence - - persistent-migration - persistent-mongoDB - persistent-mysql-haskell - persistent-odbc diff --git a/pkgs/development/haskell-modules/configuration-nix.nix b/pkgs/development/haskell-modules/configuration-nix.nix index c8893a751fd..b93dcb18344 100644 --- a/pkgs/development/haskell-modules/configuration-nix.nix +++ b/pkgs/development/haskell-modules/configuration-nix.nix @@ -163,6 +163,7 @@ self: super: builtins.intersectAttrs super { network-transport-tcp = dontCheck super.network-transport-tcp; network-transport-zeromq = dontCheck super.network-transport-zeromq; # https://github.com/tweag/network-transport-zeromq/issues/30 oidc-client = dontCheck super.oidc-client; # the spec runs openid against google.com + persistent-migration = dontCheck super.persistent-migration; # spec requires pg_ctl binary pipes-mongodb = dontCheck super.pipes-mongodb; # http://hydra.cryp.to/build/926195/log/raw pixiv = dontCheck super.pixiv; raven-haskell = dontCheck super.raven-haskell; # http://hydra.cryp.to/build/502053/log/raw diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix index 2e08662a9de..f0e6c84e6bc 100644 --- a/pkgs/development/haskell-modules/hackage-packages.nix +++ b/pkgs/development/haskell-modules/hackage-packages.nix @@ -211081,8 +211081,6 @@ self: { ]; description = "Manual migrations for the persistent library"; license = lib.licenses.bsd3; - hydraPlatforms = lib.platforms.none; - broken = true; }) {}; "persistent-mongoDB" = callPackage diff --git a/pkgs/development/haskell-modules/non-hackage-packages.nix b/pkgs/development/haskell-modules/non-hackage-packages.nix index 4aead5d1880..e06f9d30d2d 100644 --- a/pkgs/development/haskell-modules/non-hackage-packages.nix +++ b/pkgs/development/haskell-modules/non-hackage-packages.nix @@ -24,8 +24,6 @@ self: super: { nix-linter = self.callPackage ../../development/tools/analysis/nix-linter { }; - nix-output-monitor = self.callPackage ../../tools/nix/nix-output-monitor { }; - # hasura graphql-engine is not released to hackage. # https://github.com/hasura/graphql-engine/issues/7391 ci-info = self.callPackage ../misc/haskell/hasura/ci-info.nix {}; diff --git a/pkgs/development/haskell-modules/package-list.nix b/pkgs/development/haskell-modules/package-list.nix index 64f4be3a772..688844bcc46 100644 --- a/pkgs/development/haskell-modules/package-list.nix +++ b/pkgs/development/haskell-modules/package-list.nix @@ -1,10 +1,16 @@ { runCommand, haskellPackages, lib, all-cabal-hashes, writeShellScript }: let + # Checks if the version looks like a Haskell PVP version which is the format + # Hackage enforces. This will return false if the version strings is empty or + # we've overridden the package to ship an unstable version of the package + # (sadly there's no good way to show something useful on hackage in this case). + isPvpVersion = v: builtins.match "([0-9]+)(\\.[0-9]+)*" v != null; + pkgLine = name: pkg: let version = pkg.version or ""; in - if version != "" then + if isPvpVersion version then ''"${name}","${version}","http://hydra.nixos.org/job/nixpkgs/trunk/haskellPackages.${name}.x86_64-linux"'' else ""; all-haskellPackages = builtins.toFile "all-haskellPackages" (lib.concatStringsSep "\n" (lib.filter (x: x != "") (lib.mapAttrsToList pkgLine haskellPackages))); diff --git a/pkgs/development/interpreters/guile/3.0.nix b/pkgs/development/interpreters/guile/3.0.nix index 99f3f84829c..d0f5aa5573b 100644 --- a/pkgs/development/interpreters/guile/3.0.nix +++ b/pkgs/development/interpreters/guile/3.0.nix @@ -140,7 +140,7 @@ builder rec { # Expect the text in format of '"https://ftp.gnu.org/gnu/guile/guile-3.0.8.tar.gz"' new_version="$(curl -s https://www.gnu.org/software/guile/download/ | pcregrep -o1 '"https://ftp.gnu.org/gnu/guile/guile-(3[.0-9]+).tar.gz"')" - update-source-version ${pname} "$new_version" + update-source-version guile_3_0 "$new_version" ''; }; diff --git a/pkgs/development/interpreters/python/cpython/default.nix b/pkgs/development/interpreters/python/cpython/default.nix index 1bcbd2bb4b5..02ecf8d25b1 100644 --- a/pkgs/development/interpreters/python/cpython/default.nix +++ b/pkgs/development/interpreters/python/cpython/default.nix @@ -191,7 +191,6 @@ in with passthru; stdenv.mkDerivation { prePatch = optionalString stdenv.isDarwin '' substituteInPlace configure --replace '`/usr/bin/arch`' '"i386"' - substituteInPlace configure --replace '-Wl,-stack_size,1000000' ' ' '' + optionalString (pythonOlder "3.9" && stdenv.isDarwin && x11Support) '' # Broken on >= 3.9; replaced with ./3.9/darwin-tcl-tk.patch substituteInPlace setup.py --replace /Library/Frameworks /no-such-path @@ -342,8 +341,6 @@ in with passthru; stdenv.mkDerivation { substituteInPlace ./setup.py --replace $i /no-such-path done '' + optionalString stdenv.isDarwin '' - export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -msse2" - export MACOSX_DEPLOYMENT_TARGET=10.6 # Override the auto-detection in setup.py, which assumes a universal build export PYTHON_DECIMAL_WITH_MACHINE=${if stdenv.isAarch64 then "uint128" else "x64"} '' + optionalString (isPy3k && pythonOlder "3.7") '' diff --git a/pkgs/development/interpreters/python/default.nix b/pkgs/development/interpreters/python/default.nix index 608486c3aa1..579e3a05c58 100644 --- a/pkgs/development/interpreters/python/default.nix +++ b/pkgs/development/interpreters/python/default.nix @@ -120,15 +120,6 @@ with pkgs; }; sources = { - python38 = { - sourceVersion = { - major = "3"; - minor = "8"; - patch = "12"; - suffix = ""; - }; - sha256 = "1si8hw2xpagh4iji89zdx69p3dv5mjqwwbx2x2sl6lrp41jaglxi"; - }; python39 = { sourceVersion = { major = "3"; @@ -169,19 +160,26 @@ in { sourceVersion = { major = "3"; minor = "7"; - patch = "12"; + patch = "13"; suffix = ""; }; - sha256 = "041jqjl5wf7gsw84zd3jgvg91skq20l2fy5zbhz237w38zxzfyzp"; + sha256 = "sha256-mfEGJ134iZw+jLnXwBzmhsIC7ydZUzAUJxlGk95b74Q="; inherit (darwin) configd; inherit passthruFun; }; - python38 = callPackage ./cpython ({ + python38 = callPackage ./cpython { self = python38; + sourceVersion = { + major = "3"; + minor = "8"; + patch = "13"; + suffix = ""; + }; + sha256 = "sha256-bzCQdwEgQKo5/o8MYduMD6HEUTZ2MpnTdcnldW8Jz1c="; inherit (darwin) configd; inherit passthruFun; - } // sources.python38); + }; python39 = callPackage ./cpython ({ self = python39; @@ -201,9 +199,9 @@ in { major = "3"; minor = "11"; patch = "0"; - suffix = "a4"; + suffix = "a6"; }; - sha256 = "sha256-Q3/nN2w2Pa+vNM6A8ERrQfyaQsDiqMflGdPwoLfPs+0="; + sha256 = "sha256-HFOi/3WHljPjDKwp0qpregEONVuV8L+axpG+zPX50So="; inherit (darwin) configd; inherit passthruFun; }; diff --git a/pkgs/development/libraries/SDL2/Fix-build-against-wayland-1.20.patch b/pkgs/development/libraries/SDL2/Fix-build-against-wayland-1.20.patch deleted file mode 100644 index 1be600bedb3..00000000000 --- a/pkgs/development/libraries/SDL2/Fix-build-against-wayland-1.20.patch +++ /dev/null @@ -1,43 +0,0 @@ -From a31d1f1683ef2e9c063c3fa1db79d111cca99414 Mon Sep 17 00:00:00 2001 -From: David Redondo <kde@david-redondo.de> -Date: Fri, 10 Dec 2021 16:22:34 +0100 -Subject: [PATCH] Fix build against wayland 1.20 - -Fixes #5088 - -(cherry picked from commit e2ade2bfc46d915cd306c63c830b81d800b2575f) ---- - src/video/wayland/SDL_waylanddyn.h | 2 ++ - src/video/wayland/SDL_waylandsym.h | 4 ++++ - 2 files changed, 6 insertions(+) - -diff --git a/src/video/wayland/SDL_waylanddyn.h b/src/video/wayland/SDL_waylanddyn.h -index 485a9c19f..37070e946 100644 ---- a/src/video/wayland/SDL_waylanddyn.h -+++ b/src/video/wayland/SDL_waylanddyn.h -@@ -81,6 +81,8 @@ void SDL_WAYLAND_UnloadSymbols(void); - #define wl_proxy_add_listener (*WAYLAND_wl_proxy_add_listener) - #define wl_proxy_marshal_constructor (*WAYLAND_wl_proxy_marshal_constructor) - #define wl_proxy_marshal_constructor_versioned (*WAYLAND_wl_proxy_marshal_constructor_versioned) -+#define wl_proxy_marshal_flags (*WAYLAND_wl_proxy_marshal_flags) -+#define wl_proxy_marshal_array_flags (*WAYLAND_wl_proxy_marshal_array_flags) - - #define wl_seat_interface (*WAYLAND_wl_seat_interface) - #define wl_surface_interface (*WAYLAND_wl_surface_interface) -diff --git a/src/video/wayland/SDL_waylandsym.h b/src/video/wayland/SDL_waylandsym.h -index c4c189d3c..789f49e27 100644 ---- a/src/video/wayland/SDL_waylandsym.h -+++ b/src/video/wayland/SDL_waylandsym.h -@@ -71,6 +71,10 @@ SDL_WAYLAND_SYM(struct wl_proxy *, wl_proxy_marshal_constructor, (struct wl_prox - SDL_WAYLAND_MODULE(WAYLAND_CLIENT_1_10) - SDL_WAYLAND_SYM(struct wl_proxy *, wl_proxy_marshal_constructor_versioned, (struct wl_proxy *proxy, uint32_t opcode, const struct wl_interface *interface, uint32_t version, ...)) - -+SDL_WAYLAND_MODULE(WAYLAND_CLIENT_1_20) -+SDL_WAYLAND_SYM(struct wl_proxy*, wl_proxy_marshal_flags, (struct wl_proxy *proxy, uint32_t opcode, const struct wl_interface *interfac, uint32_t version, uint32_t flags, ...)) -+SDL_WAYLAND_SYM(struct wl_proxy*, wl_proxy_marshal_array_flags, (struct wl_proxy *proxy, uint32_t opcode, const struct wl_interface *interface, uint32_t version, uint32_t flags, union wl_argument *args)) -+ - SDL_WAYLAND_INTERFACE(wl_seat_interface) - SDL_WAYLAND_INTERFACE(wl_surface_interface) - SDL_WAYLAND_INTERFACE(wl_shm_pool_interface) --- -2.33.1 diff --git a/pkgs/development/libraries/SDL2/default.nix b/pkgs/development/libraries/SDL2/default.nix index 95022211d2f..d1086de3718 100644 --- a/pkgs/development/libraries/SDL2/default.nix +++ b/pkgs/development/libraries/SDL2/default.nix @@ -1,20 +1,50 @@ -{ lib, stdenv, config, fetchurl, pkg-config +{ lib +, stdenv +, config +, fetchurl +, pkg-config , libGLSupported ? lib.elem stdenv.hostPlatform.system lib.platforms.mesaPlatforms -, openglSupport ? libGLSupported, libGL -, alsaSupport ? stdenv.isLinux && !stdenv.hostPlatform.isAndroid, alsa-lib +, openglSupport ? libGLSupported +, libGL +, alsaSupport ? stdenv.isLinux && !stdenv.hostPlatform.isAndroid +, alsa-lib , x11Support ? !stdenv.targetPlatform.isWindows && !stdenv.hostPlatform.isAndroid -, libX11, xorgproto, libICE, libXi, libXScrnSaver, libXcursor -, libXinerama, libXext, libXxf86vm, libXrandr +, libX11 +, xorgproto +, libICE +, libXi +, libXScrnSaver +, libXcursor +, libXinerama +, libXext +, libXxf86vm +, libXrandr , waylandSupport ? stdenv.isLinux && !stdenv.hostPlatform.isAndroid -, wayland, wayland-protocols, libxkbcommon -, dbusSupport ? stdenv.isLinux && !stdenv.hostPlatform.isAndroid, dbus -, udevSupport ? false, udev -, ibusSupport ? false, ibus -, fcitxSupport ? false, fcitx +, wayland +, wayland-protocols +, libxkbcommon +, dbusSupport ? stdenv.isLinux && !stdenv.hostPlatform.isAndroid +, dbus +, udevSupport ? false +, udev +, ibusSupport ? false +, ibus +, fcitxSupport ? false +, fcitx +, libdecorSupport ? stdenv.isLinux && !stdenv.hostPlatform.isAndroid +, libdecor +, pipewireSupport ? stdenv.isLinux && !stdenv.hostPlatform.isAndroid +, pipewire # NOTE: must be built with SDL2 without pipewire support , pulseaudioSupport ? config.pulseaudio or stdenv.isLinux && !stdenv.hostPlatform.isAndroid , libpulseaudio -, AudioUnit, Cocoa, CoreAudio, CoreServices, ForceFeedback, OpenGL -, audiofile, libiconv +, AudioUnit +, Cocoa +, CoreAudio +, CoreServices +, ForceFeedback +, OpenGL +, audiofile +, libiconv , withStatic ? false }: @@ -25,32 +55,16 @@ with lib; stdenv.mkDerivation rec { pname = "SDL2"; - version = "2.0.14"; + version = "2.0.20"; src = fetchurl { url = "https://www.libsdl.org/release/${pname}-${version}.tar.gz"; - sha256 = "1g1jahknv5r4yhh1xq5sf0md20ybdw1zh1i15lry26sq39bmn8fq"; + sha256 = "sha256-xWq6HXtbDn6Znkp2mMcLY6M5T/lwS19uHFfgwW8E3QY="; }; dontDisableStatic = withStatic; outputs = [ "out" "dev" ]; outputBin = "dev"; # sdl-config - patches = [ - ./find-headers.patch - # To fix the build with wayland 1.20.0: - ./Fix-build-against-wayland-1.20.patch - ]; - - # Fix with mesa 19.2: https://bugzilla.libsdl.org/show_bug.cgi?id=4797 - postPatch = '' - substituteInPlace include/SDL_opengl_glext.h \ - --replace "typedef ptrdiff_t GLsizeiptr;" "typedef signed long int khronos_ssize_t; typedef khronos_ssize_t GLsizeiptr;" \ - --replace "typedef ptrdiff_t GLintptr;" "typedef signed long int khronos_intptr_t; typedef khronos_intptr_t GLintptr;" - - substituteInPlace configure \ - --replace 'WAYLAND_SCANNER=`$PKG_CONFIG --variable=wayland_scanner wayland-scanner`' 'WAYLAND_SCANNER=`pkg-config --variable=wayland_scanner wayland-scanner`' - ''; - depsBuildBuild = [ pkg-config ]; nativeBuildInputs = [ pkg-config ] ++ optionals waylandSupport [ wayland ]; @@ -63,18 +77,19 @@ stdenv.mkDerivation rec { # Propagated for #include <X11/Xlib.h> and <X11/Xatom.h> in SDL_syswm.h. ++ optionals x11Support [ libX11 xorgproto ]; - dlopenBuildInputs = [ ] - ++ optionals alsaSupport [ alsa-lib audiofile ] - ++ optional dbusSupport dbus - ++ optional pulseaudioSupport libpulseaudio - ++ optional udevSupport udev + dlopenBuildInputs = optionals alsaSupport [ alsa-lib audiofile ] + ++ optional dbusSupport dbus + ++ optional libdecorSupport libdecor + ++ optional pipewireSupport pipewire + ++ optional pulseaudioSupport libpulseaudio + ++ optional udevSupport udev ++ optionals waylandSupport [ wayland wayland-protocols libxkbcommon ] ++ optionals x11Support [ libICE libXi libXScrnSaver libXcursor libXinerama libXext libXrandr libXxf86vm ]; buildInputs = [ libiconv ] ++ dlopenBuildInputs - ++ optional ibusSupport ibus - ++ optional fcitxSupport fcitx + ++ optional ibusSupport ibus + ++ optional fcitxSupport fcitx ++ optionals stdenv.isDarwin [ AudioUnit Cocoa CoreAudio CoreServices ForceFeedback OpenGL ]; enableParallelBuilding = true; @@ -82,9 +97,9 @@ stdenv.mkDerivation rec { configureFlags = [ "--disable-oss" ] ++ optional (!x11Support) "--without-x" - ++ optional alsaSupport "--with-alsa-prefix=${alsa-lib.out}/lib" - ++ optional stdenv.targetPlatform.isWindows "--disable-video-opengles" - ++ optional stdenv.isDarwin "--disable-sdltest"; + ++ optional alsaSupport "--with-alsa-prefix=${alsa-lib.out}/lib" + ++ optional stdenv.targetPlatform.isWindows "--disable-video-opengles" + ++ optional stdenv.isDarwin "--disable-sdltest"; # We remove libtool .la files when static libs are requested, # because they make the builds of downstream libs like `SDL_tff` @@ -117,15 +132,17 @@ stdenv.mkDerivation rec { # # You can grep SDL sources with `grep -rE 'SDL_(NAME|.*_SYM)'` to # list the symbols used in this way. - postFixup = let - rpath = makeLibraryPath (dlopenPropagatedBuildInputs ++ dlopenBuildInputs); - in optionalString (stdenv.hostPlatform.extensions.sharedLibrary == ".so") '' - for lib in $out/lib/*.so* ; do - if ! [[ -L "$lib" ]]; then - patchelf --set-rpath "$(patchelf --print-rpath $lib):${rpath}" "$lib" - fi - done - ''; + postFixup = + let + rpath = makeLibraryPath (dlopenPropagatedBuildInputs ++ dlopenBuildInputs); + in + optionalString (stdenv.hostPlatform.extensions.sharedLibrary == ".so") '' + for lib in $out/lib/*.so* ; do + if ! [[ -L "$lib" ]]; then + patchelf --set-rpath "$(patchelf --print-rpath $lib):${rpath}" "$lib" + fi + done + ''; setupHook = ./setup-hook.sh; diff --git a/pkgs/development/libraries/SDL2/find-headers.patch b/pkgs/development/libraries/SDL2/find-headers.patch deleted file mode 100644 index a2e0c483703..00000000000 --- a/pkgs/development/libraries/SDL2/find-headers.patch +++ /dev/null @@ -1,46 +0,0 @@ -diff -ru3 SDL2-2.0.14/sdl2-config.cmake.in SDL2-2.0.14-new/sdl2-config.cmake.in ---- SDL2-2.0.14/sdl2-config.cmake.in 2020-12-21 18:44:36.000000000 +0100 -+++ SDL2-2.0.14-new/sdl2-config.cmake.in 2021-01-16 23:53:40.721121792 +0100 -@@ -6,7 +6,8 @@ - set(SDL2_PREFIX "@prefix@") - set(SDL2_EXEC_PREFIX "@prefix@") - set(SDL2_LIBDIR "@libdir@") --set(SDL2_INCLUDE_DIRS "@includedir@/SDL2") -+set(SDL2_INCLUDE_DIRS "@includedir@/SDL2" $ENV{SDL2_PATH}) -+separate_arguments(SDL2_INCLUDE_DIRS) - set(SDL2_LIBRARIES "-L${SDL2_LIBDIR} @SDL_RLD_FLAGS@ @SDL_LIBS@") - string(STRIP "${SDL2_LIBRARIES}" SDL2_LIBRARIES) - -@@ -20,14 +21,14 @@ - - add_library(SDL2::SDL2 SHARED IMPORTED) - set_target_properties(SDL2::SDL2 PROPERTIES -- INTERFACE_INCLUDE_DIRECTORIES "@includedir@/SDL2" -+ INTERFACE_INCLUDE_DIRECTORIES "${SDL2_INCLUDE_DIRS}" - IMPORTED_LINK_INTERFACE_LANGUAGES "C" - IMPORTED_LOCATION "@libdir@/${CMAKE_SHARED_LIBRARY_PREFIX}SDL2${CMAKE_SHARED_LIBRARY_SUFFIX}" - INTERFACE_LINK_LIBRARIES "${SDL2_EXTRA_LINK_FLAGS}") - - add_library(SDL2::SDL2-static STATIC IMPORTED) - set_target_properties(SDL2::SDL2-static PROPERTIES -- INTERFACE_INCLUDE_DIRECTORIES "@includedir@/SDL2" -+ INTERFACE_INCLUDE_DIRECTORIES "${SDL2_INCLUDE_DIRS}" - IMPORTED_LINK_INTERFACE_LANGUAGES "C" - IMPORTED_LOCATION "@libdir@/${CMAKE_STATIC_LIBRARY_PREFIX}SDL2${CMAKE_STATIC_LIBRARY_SUFFIX}" - INTERFACE_LINK_LIBRARIES "${SDL2_EXTRA_LINK_FLAGS_STATIC}") -diff -ru3 SDL2-2.0.14/sdl2-config.in SDL2-2.0.14-new/sdl2-config.in ---- SDL2-2.0.14/sdl2-config.in 2020-12-21 18:44:36.000000000 +0100 -+++ SDL2-2.0.14-new/sdl2-config.in 2021-01-16 23:57:11.940353171 +0100 -@@ -42,7 +42,11 @@ - echo @SDL_VERSION@ - ;; - --cflags) -- echo -I@includedir@/SDL2 @SDL_CFLAGS@ -+ SDL_CFLAGS="" -+ for i in @includedir@/SDL2 $SDL2_PATH; do -+ SDL_CFLAGS="$SDL_CFLAGS -I$i" -+ done -+ echo $SDL_CFLAGS @SDL_CFLAGS@ - ;; - @ENABLE_SHARED_TRUE@ --libs) - @ENABLE_SHARED_TRUE@ echo -L@libdir@ @SDL_RLD_FLAGS@ @SDL_LIBS@ diff --git a/pkgs/development/libraries/audio/lv2/default.nix b/pkgs/development/libraries/audio/lv2/default.nix index 616ad5b0c89..d0ef2e65c59 100644 --- a/pkgs/development/libraries/audio/lv2/default.nix +++ b/pkgs/development/libraries/audio/lv2/default.nix @@ -1,24 +1,50 @@ -{ lib, stdenv, fetchurl, gtk2, libsndfile, pkg-config, python3, wafHook }: +{ stdenv +, lib +, fetchurl +, libsndfile +, pkg-config +, python3 +, wafHook +, pipewire +}: stdenv.mkDerivation rec { pname = "lv2"; version = "1.18.2"; + outputs = [ "out" "dev" ]; + src = fetchurl { url = "https://lv2plug.in/spec/${pname}-${version}.tar.bz2"; sha256 = "sha256-TokfvHRMBYVb6136gugisUkX3Wbpj4K4Iw29HHqy4F4="; }; - nativeBuildInputs = [ pkg-config wafHook ]; - buildInputs = [ gtk2 libsndfile python3 ]; + nativeBuildInputs = [ + pkg-config + wafHook + ]; + + buildInputs = [ + libsndfile + python3 + ]; - wafConfigureFlags = lib.optionals stdenv.isDarwin [ "--lv2dir=${placeholder "out"}/lib/lv2" ]; + wafConfigureFlags = [ + "--includedir=${placeholder "dev"}/include" + "--bindir=${placeholder "dev"}/bin" + ] ++ lib.optionals stdenv.isDarwin [ + "--lv2dir=${placeholder "out"}/lib/lv2" + ]; + + passthru.tests = { + inherit pipewire; + }; meta = with lib; { homepage = "https://lv2plug.in"; description = "A plugin standard for audio systems"; license = licenses.mit; - maintainers = [ maintainers.goibhniu ]; + maintainers = with maintainers; [ goibhniu ]; platforms = platforms.unix; }; } diff --git a/pkgs/development/libraries/aws-checksums/default.nix b/pkgs/development/libraries/aws-checksums/default.nix index 9042dc56154..058e4ea6a5f 100644 --- a/pkgs/development/libraries/aws-checksums/default.nix +++ b/pkgs/development/libraries/aws-checksums/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "aws-checksums"; - version = "0.1.11"; + version = "0.1.12"; src = fetchFromGitHub { owner = "awslabs"; repo = pname; rev = "v${version}"; - sha256 = "sha256-fXu7GI2UR9QiBGP2n2pEFRjz9ZwA+BAK9zxhNnoYWt4="; + sha256 = "sha256-k3hIGk92HncRAktpuvNcZnaBZiLj63/wQBz2WScUjhQ="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/bctoolbox/default.nix b/pkgs/development/libraries/bctoolbox/default.nix index c4abb634ca8..aaa7c9e048b 100644 --- a/pkgs/development/libraries/bctoolbox/default.nix +++ b/pkgs/development/libraries/bctoolbox/default.nix @@ -7,7 +7,7 @@ stdenv.mkDerivation rec { pname = "bctoolbox"; - version = "5.1.0"; + version = "5.1.10"; nativeBuildInputs = [ cmake bcunit ]; buildInputs = [ mbedtls ]; @@ -18,7 +18,7 @@ stdenv.mkDerivation rec { group = "BC"; repo = pname; rev = version; - sha256 = "sha256-h+JeyZSXCuV6MtOrWxvpg7v3BXks5T70Cy2gP+If0A8="; + sha256 = "sha256-BOJ/NUJnoTeDuURH8Lx6S4RlNZPfsQX4blJkpUdraBg="; }; # Do not build static libraries diff --git a/pkgs/development/libraries/belcard/default.nix b/pkgs/development/libraries/belcard/default.nix index 12253427424..740dbeee648 100644 --- a/pkgs/development/libraries/belcard/default.nix +++ b/pkgs/development/libraries/belcard/default.nix @@ -7,7 +7,7 @@ stdenv.mkDerivation rec { pname = "belcard"; - version = "5.0.55"; + version = "5.1.10"; src = fetchFromGitLab { domain = "gitlab.linphone.org"; @@ -15,7 +15,7 @@ stdenv.mkDerivation rec { group = "BC"; repo = pname; rev = version; - sha256 = "sha256-5KHmyNplrVADVlD2IBPwEe3vbEjAMNlz+p5aIBHb6kI="; + sha256 = "sha256-ZxO0Y4R04T+3K+08fEJ9krWfYSodQLrjBZYbGrKOrXI="; }; buildInputs = [ bctoolbox belr ]; diff --git a/pkgs/development/libraries/belr/default.nix b/pkgs/development/libraries/belr/default.nix index c841b6d3e48..05d6573beb8 100644 --- a/pkgs/development/libraries/belr/default.nix +++ b/pkgs/development/libraries/belr/default.nix @@ -6,7 +6,7 @@ stdenv.mkDerivation rec { pname = "belr"; - version = "5.0.55"; + version = "5.1.3"; src = fetchFromGitLab { domain = "gitlab.linphone.org"; @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { group = "BC"; repo = pname; rev = version; - sha256 = "sha256-P3oDlaT3rN1lRhpKjbGBk7a0hJAQGQcWydFM45GMUU4="; + sha256 = "sha256-0JDwNKqPkzbXqDhgMV+okPMHPFJwmLwLsDrdD55Jcs4="; }; buildInputs = [ bctoolbox ]; diff --git a/pkgs/development/libraries/boost/generic.nix b/pkgs/development/libraries/boost/generic.nix index 49069303570..bad87fba8c6 100644 --- a/pkgs/development/libraries/boost/generic.nix +++ b/pkgs/development/libraries/boost/generic.nix @@ -127,7 +127,14 @@ stdenv.mkDerivation { extraPrefix = "libs/context/"; }) ++ optional (and (versionAtLeast version "1.70") (!versionAtLeast version "1.73")) ./cmake-paths.patch - ++ optional (versionAtLeast version "1.73") ./cmake-paths-173.patch; + ++ optional (versionAtLeast version "1.73") ./cmake-paths-173.patch + ++ optional (version == "1.77.0") (fetchpatch { + url = "https://github.com/boostorg/math/commit/7d482f6ebc356e6ec455ccb5f51a23971bf6ce5b.patch"; + sha256 = "sha256-KlmIbixcds6GyKYt1fx5BxDIrU7msrgDdYo9Va/KJR4="; + stripLen = 2; + extraPrefix = ""; + includes = [ "boost/math/special_functions/detail/bernoulli_details.hpp" ]; + }); meta = { homepage = "http://boost.org/"; diff --git a/pkgs/development/libraries/clearsilver/default.nix b/pkgs/development/libraries/clearsilver/default.nix deleted file mode 100644 index 1a3e261c60e..00000000000 --- a/pkgs/development/libraries/clearsilver/default.nix +++ /dev/null @@ -1,44 +0,0 @@ -{ lib, stdenv, fetchurl, fetchpatch, python2 }: - -stdenv.mkDerivation rec { - pname = "clearsilver"; - version = "0.10.5"; - - src = fetchurl { - url = "http://www.clearsilver.net/downloads/clearsilver-${version}.tar.gz"; - sha256 = "1046m1dpq3nkgxbis2dr2x7hynmy51n64465q78d7pdgvqwa178y"; - }; - - PYTHON_SITE = "${placeholder "out"}/${python2.sitePackages}"; - - configureFlags = [ - "--with-python=${python2.interpreter}" - "--disable-apache" - "--disable-perl" - "--disable-ruby" - "--disable-java" - "--disable-csharp" - ]; - - preInstall = '' - mkdir -p $out - mkdir -p $out/${python2.sitePackages} - ''; - - patches = [ - (fetchpatch { - url = "https://sources.debian.net/data/main/c/clearsilver/0.10.5-1.6/debian/patches/clang-gcc5.patch"; - sha256 = "0d44v9jx0b6k8nvrhknd958i9rs59kdh73z0lb4f1mzi8if16c38"; - }) - (fetchpatch { - url = "https://sources.debian.net/data/main/c/clearsilver/0.10.5-1.6/debian/patches/CVE-2011-4357.diff"; - sha256 = "1lfncavxdqckrz03gv97lcliygbpi9lnih944vmdbn9zw6fwcipi"; - }) - ]; - - meta = with lib; { - description = "Fast, powerful, and language-neutral HTML template system"; - homepage = "http://www.clearsilver.net/"; - license = licenses.free; - }; -} diff --git a/pkgs/development/libraries/exiv2/default.nix b/pkgs/development/libraries/exiv2/default.nix index f352714d237..7a79e597beb 100644 --- a/pkgs/development/libraries/exiv2/default.nix +++ b/pkgs/development/libraries/exiv2/default.nix @@ -52,6 +52,7 @@ stdenv.mkDerivation rec { cmakeFlags = [ "-DEXIV2_ENABLE_NLS=ON" "-DEXIV2_BUILD_DOC=ON" + "-DEXIV2_ENABLE_BMFF=ON" ]; buildFlags = [ diff --git a/pkgs/development/libraries/expat/default.nix b/pkgs/development/libraries/expat/default.nix index 9e913fdf52b..ac54ced75b1 100644 --- a/pkgs/development/libraries/expat/default.nix +++ b/pkgs/development/libraries/expat/default.nix @@ -16,11 +16,11 @@ stdenv.mkDerivation rec { pname = "expat"; - version = "2.4.4"; + version = "2.4.6"; src = fetchurl { url = "https://github.com/libexpat/libexpat/releases/download/R_${lib.replaceStrings ["."] ["_"] version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-tdJdbjczUcLtGbVitHMtAdJYmsjI6eeWLY3xIHzDEbg="; + sha256 = "sha256-3lV5S3qbwhSFL9wHW+quzYVO/hNhWX5iaO6HlGlRKJs="; }; outputs = [ "out" "dev" ]; # TODO: fix referrers diff --git a/pkgs/development/libraries/gd/default.nix b/pkgs/development/libraries/gd/default.nix index cd971b291b9..7ea8ce6d29b 100644 --- a/pkgs/development/libraries/gd/default.nix +++ b/pkgs/development/libraries/gd/default.nix @@ -5,10 +5,11 @@ , pkg-config , zlib , libpng -, libjpeg ? null -, libwebp ? null -, libtiff ? null -, libXpm ? null +, libjpeg +, libwebp +, libtiff +, libXpm +, libavif , fontconfig , freetype }: @@ -41,8 +42,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ autoconf automake pkg-config ]; - buildInputs = [ zlib fontconfig freetype ]; - propagatedBuildInputs = [ libpng libjpeg libwebp libtiff libXpm ]; + buildInputs = [ zlib fontconfig freetype libpng libjpeg libwebp libtiff libXpm libavif ]; outputs = [ "bin" "dev" "out" ]; diff --git a/pkgs/development/libraries/gdal/default.nix b/pkgs/development/libraries/gdal/default.nix index 3e5ae303dd7..bfa1c75b483 100644 --- a/pkgs/development/libraries/gdal/default.nix +++ b/pkgs/development/libraries/gdal/default.nix @@ -7,13 +7,13 @@ with lib; stdenv.mkDerivation rec { pname = "gdal"; - version = "3.4.1"; + version = "3.4.2"; src = fetchFromGitHub { owner = "OSGeo"; repo = "gdal"; rev = "v${version}"; - sha256 = "11rjdaxmsp9n3r9xhmgd7ksy8bh5fazwsxdj0xvl4hsy6bcn4n97"; + sha256 = "sha256-bE55VV0SrG8nxCLdpODRalnuAkn+olRdMLUjduavj6M="; }; sourceRoot = "source/gdal"; diff --git a/pkgs/development/libraries/gdbm/default.nix b/pkgs/development/libraries/gdbm/default.nix index 83df37f236b..e1a3def0ba4 100644 --- a/pkgs/development/libraries/gdbm/default.nix +++ b/pkgs/development/libraries/gdbm/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "gdbm"; - version = "1.20"; + version = "1.23"; src = fetchurl { url = "mirror://gnu/gdbm/${pname}-${version}.tar.gz"; - sha256 = "sha256-OurAVkizSCoQotqYa586OAoprWUL6AuYF6Q1+4EUopI="; + sha256 = "sha256-dLEIHSH/8TrkvXwW5dblBKTCb3zeHcoNljpIQXS7ys0="; }; doCheck = true; # not cross; diff --git a/pkgs/development/libraries/glib/default.nix b/pkgs/development/libraries/glib/default.nix index 30f43c00a05..c98058768b2 100644 --- a/pkgs/development/libraries/glib/default.nix +++ b/pkgs/development/libraries/glib/default.nix @@ -45,11 +45,11 @@ in stdenv.mkDerivation rec { pname = "glib"; - version = "2.70.2"; + version = "2.70.3"; src = fetchurl { url = "mirror://gnome/sources/glib/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "BVFFnIXNPaPVjdyQFv0ovlr1A/XhYVpxultRKslFgG8="; + sha256 = "Iz+khBweGeOW23YH1Y9rdbozE8UL8Pzgey41MtXrfUY="; }; patches = optionals stdenv.isDarwin [ diff --git a/pkgs/development/libraries/glibc/2.33-master.patch.gz b/pkgs/development/libraries/glibc/2.33-master.patch.gz index 49ffd4a7441..777e94e2b2e 100644 --- a/pkgs/development/libraries/glibc/2.33-master.patch.gz +++ b/pkgs/development/libraries/glibc/2.33-master.patch.gz Binary files differdiff --git a/pkgs/development/libraries/glibc/common.nix b/pkgs/development/libraries/glibc/common.nix index 9a84a5f8167..ffec9972d28 100644 --- a/pkgs/development/libraries/glibc/common.nix +++ b/pkgs/development/libraries/glibc/common.nix @@ -44,7 +44,7 @@ let version = "2.33"; - patchSuffix = "-108"; + patchSuffix = "-117"; sha256 = "sha256-LiVWAA4QXb1X8Layoy/yzxc73k8Nhd/8z9i35RoGd/8="; in @@ -63,7 +63,7 @@ stdenv.mkDerivation ({ [ /* No tarballs for stable upstream branch, only https://sourceware.org/git/glibc.git and using git would complicate bootstrapping. $ git fetch --all -p && git checkout origin/release/2.33/master && git describe - glibc-2.33-108-g3e2a15c666 + glibc-2.33-117-g55446dd8a2 $ git show --minimal --reverse glibc-2.33.. | gzip -9n --rsyncable - > 2.33-master.patch.gz To compare the archive contents zdiff can be used. diff --git a/pkgs/development/libraries/gnu-config/default.nix b/pkgs/development/libraries/gnu-config/default.nix index a08997ea2cd..0b765019992 100644 --- a/pkgs/development/libraries/gnu-config/default.nix +++ b/pkgs/development/libraries/gnu-config/default.nix @@ -20,6 +20,8 @@ in stdenv.mkDerivation { mkdir -p $out cp ${configGuess} $out/config.guess cp ${configSub} $out/config.sub + + chmod +x $out/config.* ''; meta = with lib; { diff --git a/pkgs/development/libraries/gpgme/default.nix b/pkgs/development/libraries/gpgme/default.nix index 263807c2fc1..75b13b6b7ef 100644 --- a/pkgs/development/libraries/gpgme/default.nix +++ b/pkgs/development/libraries/gpgme/default.nix @@ -1,28 +1,37 @@ -{ lib, stdenv, fetchurl, fetchpatch -, autoreconfHook, libgpg-error, gnupg, pkg-config, glib, pth, libassuan -, file, which, ncurses +{ lib +, stdenv +, fetchurl +, fetchpatch +, autoreconfHook +, libgpg-error +, gnupg +, pkg-config +, glib +, pth +, libassuan +, file +, which +, ncurses , texinfo , buildPackages , qtbase ? null -, pythonSupport ? false, swig2 ? null, python ? null +, pythonSupport ? false +, swig2 ? null +, python ? null }: - let inherit (stdenv.hostPlatform) system; in - stdenv.mkDerivation rec { pname = "gpgme"; - version = "1.16.0"; + version = "1.17.0"; src = fetchurl { url = "mirror://gnupg/gpgme/${pname}-${version}.tar.bz2"; - sha256 = "1l4yw9fqc1blvx1sq1jnfvp1jijla3ca2jw90p4x9m8hvfpc933c"; + sha256 = "1xb9k88rrafdi0n95nzx0d6bz7hcn9b44hciqbigrqkvxc6gblsf"; }; patches = [ - # probably included in > 1.16.0 - ./test_t-edit-sign.diff # https://dev.gnupg.org/rMc4cf527ea227edb468a84bf9b8ce996807bd6992 ./fix_gpg_list_keys.diff # https://lists.gnupg.org/pipermail/gnupg-devel/2020-April/034591.html @@ -31,22 +40,48 @@ stdenv.mkDerivation rec { url = "https://lists.gnupg.org/pipermail/gnupg-devel/attachments/20200415/f7be62d1/attachment.obj"; sha256 = "00d4sxq63601lzdp2ha1i8fvybh7dzih4531jh8bx07fab3sw65g"; }) + # Support Python 3.10 version detection without distutils, https://dev.gnupg.org/D545 + ./python-310-detection-without-distutils.patch + # Find correct version string for Python >= 3.10, https://dev.gnupg.org/D546 + ./python-find-version-string-above-310.patch # Disable python tests on Darwin as they use gpg (see configureFlags below) ] ++ lib.optional stdenv.isDarwin ./disable-python-tests.patch - # Fix _AC_UNDECLARED_WARNING for autoconf≥2.70. See https://lists.gnupg.org/pipermail/gnupg-devel/2020-November/034643.html + # Fix _AC_UNDECLARED_WARNING for autoconf>=2.70 + # See https://lists.gnupg.org/pipermail/gnupg-devel/2020-November/034643.html ++ lib.optional stdenv.cc.isClang ./fix-clang-autoconf-undeclared-warning.patch; outputs = [ "out" "dev" "info" ]; + outputBin = "dev"; # gpgme-config; not so sure about gpgme-tool - propagatedBuildInputs = - [ libgpg-error glib libassuan pth ] - ++ lib.optional (qtbase != null) qtbase; + nativeBuildInputs = [ + autoreconfHook + gnupg + pkg-config + texinfo + ] ++ lib.optionals pythonSupport [ + ncurses + python + swig2 + which + ]; - nativeBuildInputs = [ pkg-config gnupg texinfo autoreconfHook ] - ++ lib.optionals pythonSupport [ python swig2 which ncurses ]; + propagatedBuildInputs = [ + glib + libassuan + libgpg-error + pth + ] ++ lib.optionals (qtbase != null) [ + qtbase + ]; - depsBuildBuild = [ buildPackages.stdenv.cc ]; + checkInputs = [ + which + ]; + + depsBuildBuild = [ + buildPackages.stdenv.cc + ]; dontWrapQtApps = true; @@ -59,16 +94,15 @@ stdenv.mkDerivation rec { # which has a path length limit. Nix on darwin is using a build directory # that already has quite a long path and the resulting socket path doesn't # fit in the limit. https://github.com/NixOS/nix/pull/1085 - ++ lib.optionals stdenv.isDarwin [ "--disable-gpg-test" ]; + ++ lib.optionals stdenv.isDarwin [ "--disable-gpg-test" ]; NIX_CFLAGS_COMPILE = toString ( # qgpgme uses Q_ASSERT which retains build inputs at runtime unless # debugging is disabled lib.optional (qtbase != null) "-DQT_NO_DEBUG" # https://www.gnupg.org/documentation/manuals/gpgme/Largefile-Support-_0028LFS_0029.html - ++ lib.optional (system == "i686-linux") "-D_FILE_OFFSET_BITS=64"); - - checkInputs = [ which ]; + ++ lib.optional (system == "i686-linux") "-D_FILE_OFFSET_BITS=64" + ); doCheck = true; diff --git a/pkgs/development/libraries/gpgme/python-310-detection-without-distutils.patch b/pkgs/development/libraries/gpgme/python-310-detection-without-distutils.patch new file mode 100644 index 00000000000..e0eea9ff042 --- /dev/null +++ b/pkgs/development/libraries/gpgme/python-310-detection-without-distutils.patch @@ -0,0 +1,273 @@ +diff --git a/m4/ax_python_devel.m4 b/m4/ax_python_devel.m4 +--- a/m4/ax_python_devel.m4 ++++ b/m4/ax_python_devel.m4 +@@ -1,5 +1,5 @@ + # =========================================================================== +-# https://www.gnu.org/software/autoconf-archive/ax_python_devel.html ++# https://www.gnu.org/software/autoconf-archive/ax_python_devel.html + # =========================================================================== + # + # SYNOPSIS +@@ -12,8 +12,8 @@ + # in your configure.ac. + # + # This macro checks for Python and tries to get the include path to +-# 'Python.h'. It provides the $(PYTHON_CPPFLAGS) and $(PYTHON_LDFLAGS) +-# output variables. It also exports $(PYTHON_EXTRA_LIBS) and ++# 'Python.h'. It provides the $(PYTHON_CPPFLAGS) and $(PYTHON_LIBS) output ++# variables. It also exports $(PYTHON_EXTRA_LIBS) and + # $(PYTHON_EXTRA_LDFLAGS) for embedding Python in your code. + # + # You can search for some particular version of Python by passing a +@@ -67,7 +67,7 @@ + # modified version of the Autoconf Macro, you may extend this special + # exception to the GPL to apply to your modified version as well. + +-#serial 17 ++#serial 23 + + AU_ALIAS([AC_PYTHON_DEVEL], [AX_PYTHON_DEVEL]) + AC_DEFUN([AX_PYTHON_DEVEL],[ +@@ -99,7 +99,7 @@ + This version of the AC@&t@_PYTHON_DEVEL macro + doesn't work properly with versions of Python before + 2.1.0. You may need to re-run configure, setting the +-variables PYTHON_CPPFLAGS, PYTHON_LDFLAGS, PYTHON_SITE_PKG, ++variables PYTHON_CPPFLAGS, PYTHON_LIBS, PYTHON_SITE_PKG, + PYTHON_EXTRA_LIBS and PYTHON_EXTRA_LDFLAGS by hand. + Moreover, to disable this check, set PYTHON_NOVERSIONCHECK + to something else than an empty string. +@@ -135,16 +135,25 @@ + # + # Check if you have distutils, else fail + # +- AC_MSG_CHECKING([for the distutils Python package]) +- ac_distutils_result=`$PYTHON -c "import distutils" 2>&1` +- if test -z "$ac_distutils_result"; then ++ AC_MSG_CHECKING([for the sysconfig Python package]) ++ ac_sysconfig_result=`$PYTHON -c "import sysconfig" 2>&1` ++ if test $? -eq 0; then + AC_MSG_RESULT([yes]) ++ IMPORT_SYSCONFIG="import sysconfig" + else + AC_MSG_RESULT([no]) +- AC_MSG_ERROR([cannot import Python module "distutils". ++ ++ AC_MSG_CHECKING([for the distutils Python package]) ++ ac_sysconfig_result=`$PYTHON -c "from distutils import sysconfig" 2>&1` ++ if test $? -eq 0; then ++ AC_MSG_RESULT([yes]) ++ IMPORT_SYSCONFIG="from distutils import sysconfig" ++ else ++ AC_MSG_ERROR([cannot import Python module "distutils". + Please check your Python installation. The error was: +-$ac_distutils_result]) +- PYTHON_VERSION="" ++$ac_sysconfig_result]) ++ PYTHON_VERSION="" ++ fi + fi + + # +@@ -152,10 +161,19 @@ + # + AC_MSG_CHECKING([for Python include path]) + if test -z "$PYTHON_CPPFLAGS"; then +- python_path=`$PYTHON -c "import distutils.sysconfig; \ +- print (distutils.sysconfig.get_python_inc ());"` +- plat_python_path=`$PYTHON -c "import distutils.sysconfig; \ +- print (distutils.sysconfig.get_python_inc (plat_specific=1));"` ++ if test "$IMPORT_SYSCONFIG" = "import sysconfig"; then ++ # sysconfig module has different functions ++ python_path=`$PYTHON -c "$IMPORT_SYSCONFIG; \ ++ print (sysconfig.get_path ('include'));"` ++ plat_python_path=`$PYTHON -c "$IMPORT_SYSCONFIG; \ ++ print (sysconfig.get_path ('platinclude'));"` ++ else ++ # old distutils way ++ python_path=`$PYTHON -c "$IMPORT_SYSCONFIG; \ ++ print (sysconfig.get_python_inc ());"` ++ plat_python_path=`$PYTHON -c "$IMPORT_SYSCONFIG; \ ++ print (sysconfig.get_python_inc (plat_specific=1));"` ++ fi + if test -n "${python_path}"; then + if test "${plat_python_path}" != "${python_path}"; then + python_path="-I$python_path -I$plat_python_path" +@@ -172,14 +190,14 @@ + # Check for Python library path + # + AC_MSG_CHECKING([for Python library path]) +- if test -z "$PYTHON_LDFLAGS"; then ++ if test -z "$PYTHON_LIBS"; then + # (makes two attempts to ensure we've got a version number + # from the interpreter) + ac_python_version=`cat<<EOD | $PYTHON - + + # join all versioning strings, on some systems + # major/minor numbers could be in different list elements +-from distutils.sysconfig import * ++from sysconfig import * + e = get_config_var('VERSION') + if e is not None: + print(e) +@@ -197,7 +215,7 @@ + # Make the versioning information available to the compiler + + # JW: We don't need it and it interferes with the hack +- # to detect multiple Pyhton versions ++ # to detect multiple Python versions + #AC_DEFINE_UNQUOTED([HAVE_PYTHON], ["$ac_python_version"], + # [If available, contains the Python version number currently in use.]) + +@@ -205,8 +223,8 @@ + ac_python_libdir=`cat<<EOD | $PYTHON - + + # There should be only one +-import distutils.sysconfig +-e = distutils.sysconfig.get_config_var('LIBDIR') ++$IMPORT_SYSCONFIG ++e = sysconfig.get_config_var('LIBDIR') + if e is not None: + print (e) + EOD` +@@ -214,8 +232,8 @@ + # Now, for the library: + ac_python_library=`cat<<EOD | $PYTHON - + +-import distutils.sysconfig +-c = distutils.sysconfig.get_config_vars() ++$IMPORT_SYSCONFIG ++c = sysconfig.get_config_vars() + if 'LDVERSION' in c: + print ('python'+c[['LDVERSION']]) + else: +@@ -230,44 +248,67 @@ + then + # use the official shared library + ac_python_library=`echo "$ac_python_library" | sed "s/^lib//"` +- PYTHON_LDFLAGS="-L$ac_python_libdir -l$ac_python_library" ++ PYTHON_LIBS="-L$ac_python_libdir -l$ac_python_library" + else + # old way: use libpython from python_configdir + ac_python_libdir=`$PYTHON -c \ +- "from distutils.sysconfig import get_python_lib as f; \ ++ "from sysconfig import get_python_lib as f; \ + import os; \ + print (os.path.join(f(plat_specific=1, standard_lib=1), 'config'));"` +- PYTHON_LDFLAGS="-L$ac_python_libdir -lpython$ac_python_version" ++ PYTHON_LIBS="-L$ac_python_libdir -lpython$ac_python_version" + fi + +- if test -z "PYTHON_LDFLAGS"; then ++ if test -z "PYTHON_LIBS"; then + AC_MSG_ERROR([ + Cannot determine location of your Python DSO. Please check it was installed with +- dynamic libraries enabled, or try setting PYTHON_LDFLAGS by hand. ++ dynamic libraries enabled, or try setting PYTHON_LIBS by hand. + ]) + fi + fi +- AC_MSG_RESULT([$PYTHON_LDFLAGS]) +- AC_SUBST([PYTHON_LDFLAGS]) ++ AC_MSG_RESULT([$PYTHON_LIBS]) ++ AC_SUBST([PYTHON_LIBS]) + + # + # Check for site packages + # + AC_MSG_CHECKING([for Python site-packages path]) + if test -z "$PYTHON_SITE_PKG"; then +- PYTHON_SITE_PKG=`$PYTHON -c "import distutils.sysconfig; \ +- print (distutils.sysconfig.get_python_lib(0,0));"` ++ if test "$IMPORT_SYSCONFIG" = "import sysconfig"; then ++ PYTHON_SITE_PKG=`$PYTHON -c "$IMPORT_SYSCONFIG; \ ++ print (sysconfig.get_path('purelib'));"` ++ else ++ # distutils.sysconfig way ++ PYTHON_SITE_PKG=`$PYTHON -c "$IMPORT_SYSCONFIG; \ ++ print (sysconfig.get_python_lib(0,0));"` ++ fi + fi + AC_MSG_RESULT([$PYTHON_SITE_PKG]) + AC_SUBST([PYTHON_SITE_PKG]) + ++ # ++ # Check for platform-specific site packages ++ # ++ AC_MSG_CHECKING([for Python platform specific site-packages path]) ++ if test -z "$PYTHON_SITE_PKG"; then ++ if test "$IMPORT_SYSCONFIG" = "import sysconfig"; then ++ PYTHON_PLATFORM_SITE_PKG=`$PYTHON -c "$IMPORT_SYSCONFIG; \ ++ print (sysconfig.get_path('platlib'));"` ++ else ++ # distutils.sysconfig way ++ PYTHON_PLATFORM_SITE_PKG=`$PYTHON -c "$IMPORT_SYSCONFIG; \ ++ print (sysconfig.get_python_lib(1,0));"` ++ fi ++ fi ++ AC_MSG_RESULT([$PYTHON_PLATFORM_SITE_PKG]) ++ AC_SUBST([PYTHON_PLATFORM_SITE_PKG]) ++ + # + # libraries which must be linked in when embedding + # + AC_MSG_CHECKING(python extra libraries) + if test -z "$PYTHON_EXTRA_LIBS"; then +- PYTHON_EXTRA_LIBS=`$PYTHON -c "import distutils.sysconfig; \ +- conf = distutils.sysconfig.get_config_var; \ ++ PYTHON_EXTRA_LIBS=`$PYTHON -c "$IMPORT_SYSCONFIG; \ ++ conf = sysconfig.get_config_var; \ + print (conf('LIBS') + ' ' + conf('SYSLIBS'))"` + fi + AC_MSG_RESULT([$PYTHON_EXTRA_LIBS]) +@@ -278,8 +319,8 @@ + # + AC_MSG_CHECKING(python extra linking flags) + if test -z "$PYTHON_EXTRA_LDFLAGS"; then +- PYTHON_EXTRA_LDFLAGS=`$PYTHON -c "import distutils.sysconfig; \ +- conf = distutils.sysconfig.get_config_var; \ ++ PYTHON_EXTRA_LDFLAGS=`$PYTHON -c "$IMPORT_SYSCONFIG; \ ++ conf = sysconfig.get_config_var; \ + print (conf('LINKFORSHARED'))"` + fi + AC_MSG_RESULT([$PYTHON_EXTRA_LDFLAGS]) +@@ -291,8 +332,10 @@ + AC_MSG_CHECKING([consistency of all components of python development environment]) + # save current global flags + ac_save_LIBS="$LIBS" ++ ac_save_LDFLAGS="$LDFLAGS" + ac_save_CPPFLAGS="$CPPFLAGS" +- LIBS="$ac_save_LIBS $PYTHON_LDFLAGS $PYTHON_EXTRA_LDFLAGS $PYTHON_EXTRA_LIBS" ++ LIBS="$ac_save_LIBS $PYTHON_LIBS $PYTHON_EXTRA_LIBS $PYTHON_EXTRA_LIBS" ++ LDFLAGS="$ac_save_LDFLAGS $PYTHON_EXTRA_LDFLAGS" + CPPFLAGS="$ac_save_CPPFLAGS $PYTHON_CPPFLAGS" + AC_LANG_PUSH([C]) + AC_LINK_IFELSE([ +@@ -303,15 +346,17 @@ + # turn back to default flags + CPPFLAGS="$ac_save_CPPFLAGS" + LIBS="$ac_save_LIBS" ++ LDFLAGS="$ac_save_LDFLAGS" + + AC_MSG_RESULT([$pythonexists]) + + if test ! "x$pythonexists" = "xyes"; then ++ # gpgme: only warn here, no error, as we are looking for multiple versions + AC_MSG_WARN([ + Could not link test program to Python. Maybe the main Python library has been + installed in some non-standard library path. If so, pass it to configure, +- via the LDFLAGS environment variable. +- Example: ./configure LDFLAGS="-L/usr/non-standard-path/python/lib" ++ via the LIBS environment variable. ++ Example: ./configure LIBS="-L/usr/non-standard-path/python/lib" + ============================================================================ + You probably have to install the development version of the Python package + for your distribution. The exact name of this package varies among them. +@@ -323,4 +368,4 @@ + # + # all done! + # +-]) ++]) +\ No newline at end of file + diff --git a/pkgs/development/libraries/gpgme/python-find-version-string-above-310.patch b/pkgs/development/libraries/gpgme/python-find-version-string-above-310.patch new file mode 100644 index 00000000000..3d8191c9929 --- /dev/null +++ b/pkgs/development/libraries/gpgme/python-find-version-string-above-310.patch @@ -0,0 +1,373 @@ +diff --git a/configure.ac b/configure.ac +--- a/configure.ac ++++ b/configure.ac +@@ -425,11 +425,12 @@ + if test "$found_py" = "1" -o "$found_py3" = "1"; then + # Reset everything, so that we can look for another Python. + m4_foreach([mym4pythonver], +- [[2.7],[3.4],[3.5],[3.6],[3.7],[3.8],[3.9],[all]], ++ [[2.7],[3.4],[3.5],[3.6],[3.7],[3.8],[3.9],[3.10],[all]], + [unset PYTHON + unset PYTHON_VERSION + unset PYTHON_CPPFLAGS + unset PYTHON_LDFLAGS ++ unset PYTHON_LIBS + unset PYTHON_SITE_PKG + unset PYTHON_EXTRA_LIBS + unset PYTHON_EXTRA_LDFLAGS +diff --git a/m4/python.m4 b/m4/python.m4 +--- a/m4/python.m4 ++++ b/m4/python.m4 +@@ -1,10 +1,10 @@ + ## ------------------------ -*- Autoconf -*- + ## Python file handling + ## From Andrew Dalke +-## Updated by James Henstridge ++## Updated by James Henstridge and other contributors. + ## Updated by Werner Koch 2018-10-17 +-## --------------------------------- +-# Copyright (C) 1999-2017 Free Software Foundation, Inc. ++## ------------------------ ++# Copyright (C) 1999-2021 Free Software Foundation, Inc. + # + # This file is free software; the Free Software Foundation + # gives unlimited permission to copy and/or distribute it, +@@ -36,13 +36,12 @@ + # numbers and dots only. + AC_DEFUN([AM_PATH_PYTHON], + [ +- dnl Find a Python interpreter. Python versions prior to 2.0 are not +- dnl supported. (2.0 was released on October 16, 2000). Python 3.0 +- dnl through to Python 3.9 are also not supported. ++ dnl Find a Python interpreter. Python versions prior to 2.7 are not ++ dnl supported. Python 3.0 through to Python 3.3 are also not supported. + m4_define_default([_AM_PYTHON_INTERPRETER_LIST], + [python2 python2.7 dnl + python dnl +- python3 python3.9 python3.8 python3.7 python3.6 python3.5 python3.4 ++ python3 python3.10 python3.9 python3.8 python3.7 python3.6 python3.5 python3.4 + ]) + + AC_ARG_VAR([PYTHON], [the Python interpreter]) +@@ -85,34 +84,141 @@ + ]) + + if test "$PYTHON" = :; then +- dnl Run any user-specified action, or abort. ++ dnl Run any user-specified action, or abort. + m4_default([$3], [AC_MSG_ERROR([no suitable Python interpreter found])]) + else + +- dnl Query Python for its version number. Getting [:3] seems to be +- dnl the best way to do this; it's what "site.py" does in the standard +- dnl library. +- ++ dnl Query Python for its version number. Although site.py simply uses ++ dnl sys.version[:3], printing that failed with Python 3.10, since the ++ dnl trailing zero was eliminated. So now we output just the major ++ dnl and minor version numbers, as numbers. Apparently the tertiary ++ dnl version is not of interest. ++ dnl + AC_CACHE_CHECK([for $am_display_PYTHON version], [am_cv_python_version], +- [am_cv_python_version=`$PYTHON -c "import sys; sys.stdout.write(sys.version[[:3]])"`]) ++ [am_cv_python_version=`$PYTHON -c "import sys; print ('%u.%u' % sys.version_info[[:2]])"`]) + AC_SUBST([PYTHON_VERSION], [$am_cv_python_version]) + +- dnl Use the values of $prefix and $exec_prefix for the corresponding +- dnl values of PYTHON_PREFIX and PYTHON_EXEC_PREFIX. These are made +- dnl distinct variables so they can be overridden if need be. However, +- dnl general consensus is that you shouldn't need this ability. +- +- AC_SUBST([PYTHON_PREFIX], ['${prefix}']) +- AC_SUBST([PYTHON_EXEC_PREFIX], ['${exec_prefix}']) +- +- dnl At times (like when building shared libraries) you may want ++ dnl At times, e.g., when building shared libraries, you may want + dnl to know which OS platform Python thinks this is. +- ++ dnl + AC_CACHE_CHECK([for $am_display_PYTHON platform], [am_cv_python_platform], + [am_cv_python_platform=`$PYTHON -c "import sys; sys.stdout.write(sys.platform)"`]) + AC_SUBST([PYTHON_PLATFORM], [$am_cv_python_platform]) + +- # Just factor out some code duplication. ++ dnl emacs-page ++ dnl If --with-python-sys-prefix is given, use the values of sys.prefix ++ dnl and sys.exec_prefix for the corresponding values of PYTHON_PREFIX ++ dnl and PYTHON_EXEC_PREFIX. Otherwise, use the GNU ${prefix} and ++ dnl ${exec_prefix} variables. ++ dnl ++ dnl The two are made distinct variables so they can be overridden if ++ dnl need be, although general consensus is that you shouldn't need ++ dnl this separation. ++ dnl ++ dnl Also allow directly setting the prefixes via configure options, ++ dnl overriding any default. ++ dnl ++ if test "x$prefix" = xNONE; then ++ am__usable_prefix=$ac_default_prefix ++ else ++ am__usable_prefix=$prefix ++ fi ++ ++ # Allow user to request using sys.* values from Python, ++ # instead of the GNU $prefix values. ++ AC_ARG_WITH([python-sys-prefix], ++ [AS_HELP_STRING([--with-python-sys-prefix], ++ [use Python's sys.prefix and sys.exec_prefix values])], ++ [am_use_python_sys=:], ++ [am_use_python_sys=false]) ++ ++ # Allow user to override whatever the default Python prefix is. ++ AC_ARG_WITH([python_prefix], ++ [AS_HELP_STRING([--with-python_prefix], ++ [override the default PYTHON_PREFIX])], ++ [am_python_prefix_subst=$withval ++ am_cv_python_prefix=$withval ++ AC_MSG_CHECKING([for explicit $am_display_PYTHON prefix]) ++ AC_MSG_RESULT([$am_cv_python_prefix])], ++ [ ++ if $am_use_python_sys; then ++ # using python sys.prefix value, not GNU ++ AC_CACHE_CHECK([for python default $am_display_PYTHON prefix], ++ [am_cv_python_prefix], ++ [am_cv_python_prefix=`$PYTHON -c "import sys; sys.stdout.write(sys.prefix)"`]) ++ ++ dnl If sys.prefix is a subdir of $prefix, replace the literal value of ++ dnl $prefix with a variable reference so it can be overridden. ++ case $am_cv_python_prefix in ++ $am__usable_prefix*) ++ am__strip_prefix=`echo "$am__usable_prefix" | sed 's|.|.|g'` ++ am_python_prefix_subst=`echo "$am_cv_python_prefix" | sed "s,^$am__strip_prefix,\\${prefix},"` ++ ;; ++ *) ++ am_python_prefix_subst=$am_cv_python_prefix ++ ;; ++ esac ++ else # using GNU prefix value, not python sys.prefix ++ am_python_prefix_subst='${prefix}' ++ am_python_prefix=$am_python_prefix_subst ++ AC_MSG_CHECKING([for GNU default $am_display_PYTHON prefix]) ++ AC_MSG_RESULT([$am_python_prefix]) ++ fi]) ++ # Substituting python_prefix_subst value. ++ AC_SUBST([PYTHON_PREFIX], [$am_python_prefix_subst]) ++ ++ # emacs-page Now do it all over again for Python exec_prefix, but with yet ++ # another conditional: fall back to regular prefix if that was specified. ++ AC_ARG_WITH([python_exec_prefix], ++ [AS_HELP_STRING([--with-python_exec_prefix], ++ [override the default PYTHON_EXEC_PREFIX])], ++ [am_python_exec_prefix_subst=$withval ++ am_cv_python_exec_prefix=$withval ++ AC_MSG_CHECKING([for explicit $am_display_PYTHON exec_prefix]) ++ AC_MSG_RESULT([$am_cv_python_exec_prefix])], ++ [ ++ # no explicit --with-python_exec_prefix, but if ++ # --with-python_prefix was given, use its value for python_exec_prefix too. ++ AS_IF([test -n "$with_python_prefix"], ++ [am_python_exec_prefix_subst=$with_python_prefix ++ am_cv_python_exec_prefix=$with_python_prefix ++ AC_MSG_CHECKING([for python_prefix-given $am_display_PYTHON exec_prefix]) ++ AC_MSG_RESULT([$am_cv_python_exec_prefix])], ++ [ ++ # Set am__usable_exec_prefix whether using GNU or Python values, ++ # since we use that variable for pyexecdir. ++ if test "x$exec_prefix" = xNONE; then ++ am__usable_exec_prefix=$am__usable_prefix ++ else ++ am__usable_exec_prefix=$exec_prefix ++ fi ++ # ++ if $am_use_python_sys; then # using python sys.exec_prefix, not GNU ++ AC_CACHE_CHECK([for python default $am_display_PYTHON exec_prefix], ++ [am_cv_python_exec_prefix], ++ [am_cv_python_exec_prefix=`$PYTHON -c "import sys; sys.stdout.write(sys.exec_prefix)"`]) ++ dnl If sys.exec_prefix is a subdir of $exec_prefix, replace the ++ dnl literal value of $exec_prefix with a variable reference so it can ++ dnl be overridden. ++ case $am_cv_python_exec_prefix in ++ $am__usable_exec_prefix*) ++ am__strip_prefix=`echo "$am__usable_exec_prefix" | sed 's|.|.|g'` ++ am_python_exec_prefix_subst=`echo "$am_cv_python_exec_prefix" | sed "s,^$am__strip_prefix,\\${exec_prefix},"` ++ ;; ++ *) ++ am_python_exec_prefix_subst=$am_cv_python_exec_prefix ++ ;; ++ esac ++ else # using GNU $exec_prefix, not python sys.exec_prefix ++ am_python_exec_prefix_subst='${exec_prefix}' ++ am_python_exec_prefix=$am_python_exec_prefix_subst ++ AC_MSG_CHECKING([for GNU default $am_display_PYTHON exec_prefix]) ++ AC_MSG_RESULT([$am_python_exec_prefix]) ++ fi])]) ++ # Substituting python_exec_prefix_subst. ++ AC_SUBST([PYTHON_EXEC_PREFIX], [$am_python_exec_prefix_subst]) ++ ++ # Factor out some code duplication into this shell variable. + am_python_setup_sysconfig="\ + import sys + # Prefer sysconfig over distutils.sysconfig, for better compatibility +@@ -132,96 +238,95 @@ + except ImportError: + pass" + +- dnl Set up 4 directories: ++ dnl emacs-page Set up 4 directories: + +- dnl pythondir -- where to install python scripts. This is the +- dnl site-packages directory, not the python standard library +- dnl directory like in previous automake betas. This behavior +- dnl is more consistent with lispdir.m4 for example. ++ dnl 1. pythondir: where to install python scripts. This is the ++ dnl site-packages directory, not the python standard library ++ dnl directory like in previous automake betas. This behavior ++ dnl is more consistent with lispdir.m4 for example. + dnl Query distutils for this directory. +- AC_CACHE_CHECK([for $am_display_PYTHON script directory], +- [am_cv_python_pythondir], +- [if test "x$prefix" = xNONE +- then +- am_py_prefix=$ac_default_prefix +- else +- am_py_prefix=$prefix +- fi +- am_cv_python_pythondir=`$PYTHON -c " ++ dnl ++ AC_CACHE_CHECK([for $am_display_PYTHON script directory (pythondir)], ++ [am_cv_python_pythondir], ++ [if test "x$am_cv_python_prefix" = x; then ++ am_py_prefix=$am__usable_prefix ++ else ++ am_py_prefix=$am_cv_python_prefix ++ fi ++ am_cv_python_pythondir=`$PYTHON -c " + $am_python_setup_sysconfig + if can_use_sysconfig: +- sitedir = sysconfig.get_path('purelib', vars={'base':'$am_py_prefix'}) ++ sitedir = sysconfig.get_path('purelib', vars={'base':'$am_py_prefix'}) + else: +- from distutils import sysconfig +- sitedir = sysconfig.get_python_lib(0, 0, prefix='$am_py_prefix') ++ from distutils import sysconfig ++ sitedir = sysconfig.get_python_lib(0, 0, prefix='$am_py_prefix') + sys.stdout.write(sitedir)"` +- case $am_cv_python_pythondir in +- $am_py_prefix*) +- am__strip_prefix=`echo "$am_py_prefix" | sed 's|.|.|g'` +- am_cv_python_pythondir=`echo "$am_cv_python_pythondir" | sed "s,^$am__strip_prefix,$PYTHON_PREFIX,"` +- ;; +- *) +- case $am_py_prefix in +- /usr|/System*) ;; +- *) +- am_cv_python_pythondir=$PYTHON_PREFIX/lib/python$PYTHON_VERSION/site-packages +- ;; +- esac +- ;; ++ # ++ case $am_cv_python_pythondir in ++ $am_py_prefix*) ++ am__strip_prefix=`echo "$am_py_prefix" | sed 's|.|.|g'` ++ am_cv_python_pythondir=`echo "$am_cv_python_pythondir" | sed "s,^$am__strip_prefix,\\${PYTHON_PREFIX},"` ++ ;; ++ *) ++ case $am_py_prefix in ++ /usr|/System*) ;; ++ *) am_cv_python_pythondir="\${PYTHON_PREFIX}/lib/python$PYTHON_VERSION/site-packages" ++ ;; + esac +- ]) ++ ;; ++ esac ++ ]) + AC_SUBST([pythondir], [$am_cv_python_pythondir]) + +- dnl pkgpythondir -- $PACKAGE directory under pythondir. Was +- dnl PYTHON_SITE_PACKAGE in previous betas, but this naming is +- dnl more consistent with the rest of automake. +- ++ dnl 2. pkgpythondir: $PACKAGE directory under pythondir. Was ++ dnl PYTHON_SITE_PACKAGE in previous betas, but this naming is ++ dnl more consistent with the rest of automake. ++ dnl + AC_SUBST([pkgpythondir], [\${pythondir}/$PACKAGE]) + +- dnl pyexecdir -- directory for installing python extension modules +- dnl (shared libraries) ++ dnl 3. pyexecdir: directory for installing python extension modules ++ dnl (shared libraries). + dnl Query distutils for this directory. +- AC_CACHE_CHECK([for $am_display_PYTHON extension module directory], +- [am_cv_python_pyexecdir], +- [if test "x$exec_prefix" = xNONE +- then +- am_py_exec_prefix=$am_py_prefix +- else +- am_py_exec_prefix=$exec_prefix +- fi +- am_cv_python_pyexecdir=`$PYTHON -c " ++ dnl ++ AC_CACHE_CHECK([for $am_display_PYTHON extension module directory (pyexecdir)], ++ [am_cv_python_pyexecdir], ++ [if test "x$am_cv_python_exec_prefix" = x; then ++ am_py_exec_prefix=$am__usable_exec_prefix ++ else ++ am_py_exec_prefix=$am_cv_python_exec_prefix ++ fi ++ am_cv_python_pyexecdir=`$PYTHON -c " + $am_python_setup_sysconfig + if can_use_sysconfig: +- sitedir = sysconfig.get_path('platlib', vars={'platbase':'$am_py_prefix'}) ++ sitedir = sysconfig.get_path('platlib', vars={'platbase':'$am_py_exec_prefix'}) + else: +- from distutils import sysconfig +- sitedir = sysconfig.get_python_lib(1, 0, prefix='$am_py_prefix') ++ from distutils import sysconfig ++ sitedir = sysconfig.get_python_lib(1, 0, prefix='$am_py_exec_prefix') + sys.stdout.write(sitedir)"` +- case $am_cv_python_pyexecdir in +- $am_py_exec_prefix*) +- am__strip_prefix=`echo "$am_py_exec_prefix" | sed 's|.|.|g'` +- am_cv_python_pyexecdir=`echo "$am_cv_python_pyexecdir" | sed "s,^$am__strip_prefix,$PYTHON_EXEC_PREFIX,"` +- ;; +- *) +- case $am_py_exec_prefix in +- /usr|/System*) ;; +- *) +- am_cv_python_pyexecdir=$PYTHON_EXEC_PREFIX/lib/python$PYTHON_VERSION/site-packages +- ;; +- esac +- ;; ++ # ++ case $am_cv_python_pyexecdir in ++ $am_py_exec_prefix*) ++ am__strip_prefix=`echo "$am_py_exec_prefix" | sed 's|.|.|g'` ++ am_cv_python_pyexecdir=`echo "$am_cv_python_pyexecdir" | sed "s,^$am__strip_prefix,\\${PYTHON_EXEC_PREFIX},"` ++ ;; ++ *) ++ case $am_py_exec_prefix in ++ /usr|/System*) ;; ++ *) am_cv_python_pyexecdir="\${PYTHON_EXEC_PREFIX}/lib/python$PYTHON_VERSION/site-packages" ++ ;; + esac +- ]) ++ ;; ++ esac ++ ]) + AC_SUBST([pyexecdir], [$am_cv_python_pyexecdir]) + +- dnl pkgpyexecdir -- $(pyexecdir)/$(PACKAGE) +- ++ dnl 4. pkgpyexecdir: $(pyexecdir)/$(PACKAGE) ++ dnl + AC_SUBST([pkgpyexecdir], [\${pyexecdir}/$PACKAGE]) + + dnl Run any user-specified action. + $2 + fi +- + ]) + + + diff --git a/pkgs/development/libraries/gpgme/test_t-edit-sign.diff b/pkgs/development/libraries/gpgme/test_t-edit-sign.diff deleted file mode 100644 index 55075b9eb12..00000000000 --- a/pkgs/development/libraries/gpgme/test_t-edit-sign.diff +++ /dev/null @@ -1,125 +0,0 @@ -From 81a33ea5e1b86d586b956e893a5b25c4cd41c969 Mon Sep 17 00:00:00 2001 -From: =?UTF-8?q?Ingo=20Kl=C3=B6cker?= <dev@ingo-kloecker.de> -Date: Sat, 26 Jun 2021 18:02:47 +0200 -Subject: [PATCH] core: Fix use-after-free issue in test - -* tests/gpg/t-edit-sign.c (sign_key, verify_key_signature): New. -(main): Factored out signing and verifying the result. --- - -Factoring the two steps of the test into different functions fixes the -use-after-free issue that was caused by accidentaly using a variable -of the first step in the second step. - -GnuPG-bug-id: 5509 ---- - tests/gpg/t-edit-sign.c | 54 ++++++++++++++++++++++++++++------------- - 1 file changed, 37 insertions(+), 17 deletions(-) - -diff --git a/tests/gpg/t-edit-sign.c b/tests/gpg/t-edit-sign.c -index 2f983622..e0494c54 100644 ---- a/tests/gpg/t-edit-sign.c -+++ b/tests/gpg/t-edit-sign.c -@@ -107,31 +107,19 @@ interact_fnc (void *opaque, const char *status, const char *args, int fd) - } - - --int --main (int argc, char **argv) -+void -+sign_key (const char *key_fpr, const char *signer_fpr) - { - gpgme_ctx_t ctx; - gpgme_error_t err; - gpgme_data_t out = NULL; -- const char *signer_fpr = "A0FF4590BB6122EDEF6E3C542D727CC768697734"; /* Alpha Test */ - gpgme_key_t signing_key = NULL; -- const char *key_fpr = "D695676BDCEDCC2CDD6152BCFE180B1DA9E3B0B2"; /* Bravo Test */ - gpgme_key_t key = NULL; -- gpgme_key_t signed_key = NULL; -- gpgme_user_id_t signed_uid = NULL; -- gpgme_key_sig_t key_sig = NULL; - char *agent_info; -- int mode; -- -- (void)argc; -- (void)argv; -- -- init_gpgme (GPGME_PROTOCOL_OpenPGP); - - err = gpgme_new (&ctx); - fail_if_err (err); - -- /* Sign the key */ - agent_info = getenv("GPG_AGENT_INFO"); - if (!(agent_info && strchr (agent_info, ':'))) - gpgme_set_passphrase_cb (ctx, passphrase_cb, 0); -@@ -159,8 +147,23 @@ main (int argc, char **argv) - gpgme_data_release (out); - gpgme_key_unref (key); - gpgme_key_unref (signing_key); -+ gpgme_release (ctx); -+} -+ -+ -+void -+verify_key_signature (const char *key_fpr, const char *signer_keyid) -+{ -+ gpgme_ctx_t ctx; -+ gpgme_error_t err; -+ gpgme_key_t signed_key = NULL; -+ gpgme_user_id_t signed_uid = NULL; -+ gpgme_key_sig_t key_sig = NULL; -+ int mode; -+ -+ err = gpgme_new (&ctx); -+ fail_if_err (err); - -- /* Verify the key signature */ - mode = gpgme_get_keylist_mode (ctx); - mode |= GPGME_KEYLIST_MODE_SIGS; - err = gpgme_set_keylist_mode (ctx, mode); -@@ -168,7 +171,7 @@ main (int argc, char **argv) - err = gpgme_get_key (ctx, key_fpr, &signed_key, 0); - fail_if_err (err); - -- signed_uid = key->uids; -+ signed_uid = signed_key->uids; - if (!signed_uid) - { - fprintf (stderr, "Signed key has no user IDs\n"); -@@ -180,7 +183,7 @@ main (int argc, char **argv) - exit (1); - } - key_sig = signed_uid->signatures->next; -- if (strcmp ("2D727CC768697734", key_sig->keyid)) -+ if (strcmp (signer_keyid, key_sig->keyid)) - { - fprintf (stderr, "Unexpected key ID in second user ID sig: %s\n", - key_sig->keyid); -@@ -196,6 +199,23 @@ main (int argc, char **argv) - - gpgme_key_unref (signed_key); - gpgme_release (ctx); -+} -+ -+ -+int -+main (int argc, char **argv) -+{ -+ const char *signer_fpr = "A0FF4590BB6122EDEF6E3C542D727CC768697734"; /* Alpha Test */ -+ const char *signer_keyid = signer_fpr + strlen(signer_fpr) - 16; -+ const char *key_fpr = "D695676BDCEDCC2CDD6152BCFE180B1DA9E3B0B2"; /* Bravo Test */ -+ -+ (void)argc; -+ (void)argv; -+ -+ init_gpgme (GPGME_PROTOCOL_OpenPGP); -+ -+ sign_key (key_fpr, signer_fpr); -+ verify_key_signature (key_fpr, signer_keyid); - - return 0; - } --- -2.32.0 diff --git a/pkgs/development/libraries/harfbuzz/default.nix b/pkgs/development/libraries/harfbuzz/default.nix index 1e36f1e7f0f..e47b18252e9 100644 --- a/pkgs/development/libraries/harfbuzz/default.nix +++ b/pkgs/development/libraries/harfbuzz/default.nix @@ -24,7 +24,7 @@ }: let - version = "3.2.0"; + version = "3.3.2"; inherit (lib) optional optionals optionalString; mesonFeatureFlag = opt: b: "-D${opt}=${if b then "enabled" else "disabled"}"; @@ -39,7 +39,7 @@ stdenv.mkDerivation { owner = "harfbuzz"; repo = "harfbuzz"; rev = version; - sha256 = "sha256-iNYp/hyJTaaF6e09YpUL7ktBhq2wRN9zKiEH59WLbYU="; + sha256 = "sha256-UbYqV7Ch9ugTIwSsCpjnS8H7tcv4P3OVpFDFDZtQCk0="; }; postPatch = '' diff --git a/pkgs/development/libraries/igraph/default.nix b/pkgs/development/libraries/igraph/default.nix index 06aad781bc7..441646c4395 100644 --- a/pkgs/development/libraries/igraph/default.nix +++ b/pkgs/development/libraries/igraph/default.nix @@ -21,13 +21,13 @@ stdenv.mkDerivation rec { pname = "igraph"; - version = "0.9.6"; + version = "0.9.7"; src = fetchFromGitHub { owner = "igraph"; repo = pname; rev = version; - sha256 = "sha256-nMM4ZQLIth9QHlLu+sXE4AXoDlq1UP20+YuBi+Op+go="; + sha256 = "sha256-SL9PcT18vFvykCv4VRXxXtlcDAcybmwEImnnKXMciFQ="; }; # Normally, igraph wants us to call bootstrap.sh, which will call diff --git a/pkgs/development/libraries/intel-gmmlib/default.nix b/pkgs/development/libraries/intel-gmmlib/default.nix index d9ac5e4da3f..79ff2c4ee5f 100644 --- a/pkgs/development/libraries/intel-gmmlib/default.nix +++ b/pkgs/development/libraries/intel-gmmlib/default.nix @@ -6,13 +6,13 @@ stdenv.mkDerivation rec { pname = "intel-gmmlib"; - version = "22.0.3"; + version = "22.1.0"; src = fetchFromGitHub { owner = "intel"; repo = "gmmlib"; rev = "intel-gmmlib-${version}"; - sha256 = "sha256-cXolz4hKLSTs8K9tCxaKnC2Pr0lQ0M+pPeF2w6bOAR8="; + sha256 = "sha256-4LFBokMEhhobKIMzZYlt3Nn88lX60l+IZZ0gi+o7Tds="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/kde-frameworks/fetch.sh b/pkgs/development/libraries/kde-frameworks/fetch.sh index 50204bc0ec0..cb4e4cc2629 100644 --- a/pkgs/development/libraries/kde-frameworks/fetch.sh +++ b/pkgs/development/libraries/kde-frameworks/fetch.sh @@ -1 +1 @@ -WGET_ARGS=( https://download.kde.org/stable/frameworks/5.90/ -A '*.tar.xz' ) +WGET_ARGS=( https://download.kde.org/stable/frameworks/5.91/ -A '*.tar.xz' ) diff --git a/pkgs/development/libraries/kde-frameworks/kdesu/kdesu-search-for-wrapped-daemon-first.patch b/pkgs/development/libraries/kde-frameworks/kdesu/kdesu-search-for-wrapped-daemon-first.patch index 07da70092dc..1379707f02f 100644 --- a/pkgs/development/libraries/kde-frameworks/kdesu/kdesu-search-for-wrapped-daemon-first.patch +++ b/pkgs/development/libraries/kde-frameworks/kdesu/kdesu-search-for-wrapped-daemon-first.patch @@ -13,18 +13,18 @@ diff --git a/src/client.cpp b/src/client.cpp index 44fbacd..6b5abf5 100644 --- a/src/client.cpp +++ b/src/client.cpp -@@ -378,11 +378,14 @@ int KDEsuClient::stopServer() +@@ -384,11 +384,14 @@ int KDEsuClient::stopServer() static QString findDaemon() { -- QString daemon = QFile::decodeName(KDE_INSTALL_FULL_LIBEXECDIR_KF5 "/kdesud"); +- QString daemon = QFile::decodeName(KDE_INSTALL_FULL_LIBEXECDIR_KF "/kdesud"); - if (!QFile::exists(daemon)) { // if not in libexec, find it in PATH - daemon = QStandardPaths::findExecutable(QStringLiteral("kdesud")); - if (daemon.isEmpty()) { - qCWarning(KSU_LOG) << "kdesud daemon not found."; + QString daemon = QFile::decodeName("/run/wrappers/bin/kdesud"); + if (!QFile::exists(daemon)) { // if not in wrappers -+ daemon = QFile::decodeName(KDE_INSTALL_FULL_LIBEXECDIR_KF5 "/kdesud"); ++ daemon = QFile::decodeName(KDE_INSTALL_FULL_LIBEXECDIR_KF "/kdesud"); + if (!QFile::exists(daemon)) { // if not in libexec, find it in PATH + daemon = QStandardPaths::findExecutable(QStringLiteral("kdesud")); + if (daemon.isEmpty()) { diff --git a/pkgs/development/libraries/kde-frameworks/srcs.nix b/pkgs/development/libraries/kde-frameworks/srcs.nix index 1ffc5df68c3..2b3983a892c 100644 --- a/pkgs/development/libraries/kde-frameworks/srcs.nix +++ b/pkgs/development/libraries/kde-frameworks/srcs.nix @@ -4,667 +4,667 @@ { attica = { - version = "5.90.0"; + version = "5.91.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.90/attica-5.90.0.tar.xz"; - sha256 = "0zs37qyh9biafk76ps2xfc41hbd1n4dq42qqqcvbqcrwfgqz2wlk"; - name = "attica-5.90.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.91/attica-5.91.0.tar.xz"; + sha256 = "0svvy7qflidwxns12y2lra54gg6lhglcddzmrw7ccvbdyqcy2pn0"; + name = "attica-5.91.0.tar.xz"; }; }; baloo = { - version = "5.90.0"; + version = "5.91.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.90/baloo-5.90.0.tar.xz"; - sha256 = "1nnfys8dyiivd2if81qrgrmpprfni77an9l3wff0l5k85ac86i56"; - name = "baloo-5.90.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.91/baloo-5.91.0.tar.xz"; + sha256 = "1cqjbaiwqba707xaz9zsrdz9cms2mdrhv6jpwsq8q7f4g4rxcx3m"; + name = "baloo-5.91.0.tar.xz"; }; }; bluez-qt = { - version = "5.90.0"; + version = "5.91.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.90/bluez-qt-5.90.0.tar.xz"; - sha256 = "056i5ndrg5fqm1bx49a0plfhlladphha128wi766zdhcm6np11z3"; - name = "bluez-qt-5.90.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.91/bluez-qt-5.91.0.tar.xz"; + sha256 = "0p37jrmppwahh4vaq3wkw6xn0ms8dxcxpfd4glzjlnw426zrwnjr"; + name = "bluez-qt-5.91.0.tar.xz"; }; }; breeze-icons = { - version = "5.90.0"; + version = "5.91.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.90/breeze-icons-5.90.0.tar.xz"; - sha256 = "06dfh571rf8gp4gnnqn13xqgc1bpc4ycn6bmxf38x53fxxfl3fnn"; - name = "breeze-icons-5.90.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.91/breeze-icons-5.91.0.tar.xz"; + sha256 = "0aj24gn48c17n9jzrj0az04ph4hpx7zf2rj4vgwl19iip69vfzf1"; + name = "breeze-icons-5.91.0.tar.xz"; }; }; extra-cmake-modules = { - version = "5.90.0"; + version = "5.91.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.90/extra-cmake-modules-5.90.0.tar.xz"; - sha256 = "1c5wza7srib3mdkf29ygmyj5b6jq322s6h7k5hlljqm5xhy7q07k"; - name = "extra-cmake-modules-5.90.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.91/extra-cmake-modules-5.91.0.tar.xz"; + sha256 = "0k65rvxh926ya6qahzk2ns7g1fya1429648mlx7iipxa61g8h5wp"; + name = "extra-cmake-modules-5.91.0.tar.xz"; }; }; frameworkintegration = { - version = "5.90.0"; + version = "5.91.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.90/frameworkintegration-5.90.0.tar.xz"; - sha256 = "1v7vlq2gk7j5b6gzbawgnpii7csh2zclp5v24qhx4qrmpfssylan"; - name = "frameworkintegration-5.90.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.91/frameworkintegration-5.91.0.tar.xz"; + sha256 = "1176ql8f96ap4gzjaj8vm4cr6f2rsx9z93gpc4hx4jcqjhxqrg3z"; + name = "frameworkintegration-5.91.0.tar.xz"; }; }; kactivities = { - version = "5.90.0"; + version = "5.91.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.90/kactivities-5.90.0.tar.xz"; - sha256 = "0wf7nnf3bjz2iq2wqxnyay1100ks0zscsh7sa8xfcijrl7pp305w"; - name = "kactivities-5.90.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.91/kactivities-5.91.0.tar.xz"; + sha256 = "03y4hx7jgrhac12ys8pm22h0f49kms8b71gck4xv577p3ywi3j60"; + name = "kactivities-5.91.0.tar.xz"; }; }; kactivities-stats = { - version = "5.90.0"; + version = "5.91.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.90/kactivities-stats-5.90.0.tar.xz"; - sha256 = "0qamy8xggjlnm8pkv6vxbaagcp1hg9vgi2ws2yb9xpqk8mdlfbvp"; - name = "kactivities-stats-5.90.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.91/kactivities-stats-5.91.0.tar.xz"; + sha256 = "0864qfljh20723djfzdv8h6nipw01825lhiknyqz17aj2x2ymzcq"; + name = "kactivities-stats-5.91.0.tar.xz"; }; }; kapidox = { - version = "5.90.0"; + version = "5.91.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.90/kapidox-5.90.0.tar.xz"; - sha256 = "16jl519sx7pirjp5x57x5gbgv477457063rrbwpvyf2ldb6lc29p"; - name = "kapidox-5.90.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.91/kapidox-5.91.0.tar.xz"; + sha256 = "1xxpl8rn49d2cr7ld94j3wsg21019l2kq14p5bvilisnj3salka3"; + name = "kapidox-5.91.0.tar.xz"; }; }; karchive = { - version = "5.90.0"; + version = "5.91.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.90/karchive-5.90.0.tar.xz"; - sha256 = "0411rpgr9dy0zf9mmhj7n7ax0afrn7zvkpzpnjvpvvqsrfkz7qm6"; - name = "karchive-5.90.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.91/karchive-5.91.0.tar.xz"; + sha256 = "1kjc47zzdd9jhcmynq6zw6y6zaj2c1i8pxvszx3d9x5asaz2qq53"; + name = "karchive-5.91.0.tar.xz"; }; }; kauth = { - version = "5.90.0"; + version = "5.91.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.90/kauth-5.90.0.tar.xz"; - sha256 = "1g4i1prspcczpx25wvd8lgdk8c3my7kp3wv489gvcci40rl5z913"; - name = "kauth-5.90.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.91/kauth-5.91.0.tar.xz"; + sha256 = "001svdyvs8qc6h8zkb9x072npkz6xabz6j0djjb380gl9h9wnrgq"; + name = "kauth-5.91.0.tar.xz"; }; }; kbookmarks = { - version = "5.90.0"; + version = "5.91.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.90/kbookmarks-5.90.0.tar.xz"; - sha256 = "1svc1i9zxbxf65crfhnv6sz5gknb7x87lzjd8cn11y5lwnsw36kx"; - name = "kbookmarks-5.90.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.91/kbookmarks-5.91.0.tar.xz"; + sha256 = "0iqfngsvpbgxk6h8l68idcp97df28sa2zwj707zs0mf2bl9k68m4"; + name = "kbookmarks-5.91.0.tar.xz"; 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+ sha256 = "1z6wpz7d9byx4n5zx6chmyy9k1jkmghdgahsvkqsc33z6hnh2b4m"; + name = "purpose-5.91.0.tar.xz"; }; }; qqc2-desktop-style = { - version = "5.90.0"; + version = "5.91.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.90/qqc2-desktop-style-5.90.0.tar.xz"; - sha256 = "05g1rydx0innmiz28mslix4bjsrhsnci227gadngzijncp2v288r"; - name = "qqc2-desktop-style-5.90.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.91/qqc2-desktop-style-5.91.0.tar.xz"; + sha256 = "0rd9rvffhif8yckwr7axjcv5iqn5b0jdviij7f9y8vjpkzyjvm8i"; + name = "qqc2-desktop-style-5.91.0.tar.xz"; }; }; solid = { - version = "5.90.0"; + version = "5.91.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.90/solid-5.90.0.tar.xz"; - sha256 = "10hk4mh426dhi7is5hxa1varn15ijzra5a420zk297pzkphvx0ip"; - name = "solid-5.90.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.91/solid-5.91.0.tar.xz"; + sha256 = "1a4k0amyg8mvfr2ld7v8zyphhxv33yybh55vqcshwv4a0jm1wmjg"; + name = "solid-5.91.0.tar.xz"; }; }; sonnet = { - version = "5.90.0"; + version = "5.91.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.90/sonnet-5.90.0.tar.xz"; - sha256 = "0d4xxm9vw1rc2mypv4z0yihcn679sab0afxr2kbzq01wr6p759y7"; - name = "sonnet-5.90.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.91/sonnet-5.91.0.tar.xz"; + sha256 = "067xj5mllpzl0gnxxljhfi9y4xdgrpqbckm7pykczzqrklrrx8dx"; + name = "sonnet-5.91.0.tar.xz"; }; }; syndication = { - version = "5.90.0"; + version = "5.91.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.90/syndication-5.90.0.tar.xz"; - sha256 = "0a9j443w42jwvlzjh5mfxn25kwjrz1ya6sgy0c4y3n5xbg031zmx"; - name = "syndication-5.90.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.91/syndication-5.91.0.tar.xz"; + sha256 = "1f2kb6mh1xc1k1bn536lq9gq0j2lb65qw4vpp4ixynlfij4zq1gy"; + name = "syndication-5.91.0.tar.xz"; }; }; syntax-highlighting = { - version = "5.90.0"; + version = "5.91.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.90/syntax-highlighting-5.90.0.tar.xz"; - sha256 = "19mckdfdxb5i26y75cgmda91s864jbh1wmf98bv8xa1iqxwkwj5z"; - name = "syntax-highlighting-5.90.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.91/syntax-highlighting-5.91.0.tar.xz"; + sha256 = "0fprqi2z8issh3jkql6labszkwd3cpvd6qadsg9fi46vfjr4a2ip"; + name = "syntax-highlighting-5.91.0.tar.xz"; }; }; threadweaver = { - version = "5.90.0"; + version = "5.91.0"; src = fetchurl { - url = "${mirror}/stable/frameworks/5.90/threadweaver-5.90.0.tar.xz"; - sha256 = "1frhzlzmnrp5y3lrl0ahzxh8syj4vlkjvaypsmbm2bkkn4akizg3"; - name = "threadweaver-5.90.0.tar.xz"; + url = "${mirror}/stable/frameworks/5.91/threadweaver-5.91.0.tar.xz"; + sha256 = "1900kqglkwzkjc24mvl0j7jf7xcx6cr6b1g78s5b5m18rw050j12"; + name = "threadweaver-5.91.0.tar.xz"; }; }; } diff --git a/pkgs/development/libraries/lcms2/default.nix b/pkgs/development/libraries/lcms2/default.nix index b600a2ca4c3..14579bc5915 100644 --- a/pkgs/development/libraries/lcms2/default.nix +++ b/pkgs/development/libraries/lcms2/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "lcms2"; - version = "2.12"; + version = "2.13.1"; src = fetchurl { url = "mirror://sourceforge/lcms/${pname}-${version}.tar.gz"; - sha256 = "sha256-GGY5hehkEARVrD5QdiXEOMNxA1TYXly7fNQEPhH+EPU="; + sha256 = "sha256-1HPnlueyfFrwG9bRVS1CtFtDRX5xgs6ZA/OLt0ggO4g="; }; outputs = [ "bin" "dev" "out" ]; diff --git a/pkgs/development/libraries/libaom/default.nix b/pkgs/development/libraries/libaom/default.nix index 82e44033313..3a3866911b8 100644 --- a/pkgs/development/libraries/libaom/default.nix +++ b/pkgs/development/libraries/libaom/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "libaom"; - version = "3.2.0"; + version = "3.3.0"; src = fetchzip { url = "https://aomedia.googlesource.com/aom/+archive/v${version}.tar.gz"; - sha256 = "0fmnbzpl481i7kchx4hbvb507r5pfgyrzfrlrs7jk3bicycm75qv"; + sha256 = "sha256-g6QkKLrk+SH1s5fRmseAQMmM6y4QwmKmVDPxdbqGmwg="; stripRoot = false; }; diff --git a/pkgs/development/libraries/libarchive-qt/default.nix b/pkgs/development/libraries/libarchive-qt/default.nix index 62b425bba05..ae74fd3028a 100644 --- a/pkgs/development/libraries/libarchive-qt/default.nix +++ b/pkgs/development/libraries/libarchive-qt/default.nix @@ -1,19 +1,20 @@ -{ mkDerivation, lib, fetchFromGitLab, libarchive, xz, zlib, bzip2, cmake, ninja }: +{ mkDerivation, lib, fetchFromGitLab, libarchive, xz, zlib, bzip2, meson, pkg-config, ninja }: mkDerivation rec { pname = "libarchive-qt"; - version = "2.0.6"; + version = "2.0.7"; src = fetchFromGitLab { owner = "marcusbritanicus"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Z+2zjQolV1Ncr6v9r7fGrc/fEMt0iMtGwv9eZ2Tu2cA="; + sha256 = "sha256-KRywB+Op44N00q9tgO2WNCliRgUDRvrCms1O8JYt62o="; }; nativeBuildInputs = [ - cmake + meson ninja + pkg-config ]; buildInputs = [ diff --git a/pkgs/development/libraries/libarchive/default.nix b/pkgs/development/libraries/libarchive/default.nix index 2a1d53e6ee0..1cc6fe6f521 100644 --- a/pkgs/development/libraries/libarchive/default.nix +++ b/pkgs/development/libraries/libarchive/default.nix @@ -12,13 +12,13 @@ assert xarSupport -> libxml2 != null; stdenv.mkDerivation rec { pname = "libarchive"; - version = "3.5.2"; + version = "3.6.0"; src = fetchFromGitHub { owner = "libarchive"; repo = "libarchive"; rev = "v${version}"; - sha256 = "sha256-H00UJ+ON1kBc19BgWBBKmO8f23oAg2mk7o9hhDhn50Q="; + sha256 = "sha256-u6Zeu9yTjhx5U7KZVUkuuUsQPjWN71mE5egG4T+FGfY="; }; outputs = [ "out" "lib" "dev" ]; diff --git a/pkgs/development/libraries/libbsd/default.nix b/pkgs/development/libraries/libbsd/default.nix index 745b34226e2..8c8e47b98a4 100644 --- a/pkgs/development/libraries/libbsd/default.nix +++ b/pkgs/development/libraries/libbsd/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "libbsd"; - version = "0.11.3"; + version = "0.11.5"; src = fetchurl { url = "https://libbsd.freedesktop.org/releases/${pname}-${version}.tar.xz"; - sha256 = "18a2bcl9z0zyxhrm1lfv4yhhz0589s6jz0s78apaq78mhj0wz5gz"; + sha256 = "sha256-GpyVJSVjXBu2dwyyLpabk42Oap15EjYrmO6DcFmbDv0="; }; outputs = [ "out" "dev" "man" ]; @@ -21,7 +21,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Common functions found on BSD systems"; homepage = "https://libbsd.freedesktop.org/"; - license = licenses.bsd3; + license = with licenses; [ beerware bsd2 bsd3 bsdOriginal isc mit ]; platforms = platforms.linux ++ platforms.darwin; maintainers = with maintainers; [ matthewbauer ]; }; diff --git a/pkgs/development/libraries/libclc/default.nix b/pkgs/development/libraries/libclc/default.nix index fdcc2ae0081..c634892944c 100644 --- a/pkgs/development/libraries/libclc/default.nix +++ b/pkgs/development/libraries/libclc/default.nix @@ -27,6 +27,9 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ cmake ninja python3 ]; buildInputs = [ llvm clang-unwrapped ]; strictDeps = true; + cmakeFlags = [ + "-DCMAKE_INSTALL_INCLUDEDIR=include" + ]; meta = with lib; { homepage = "http://libclc.llvm.org/"; diff --git a/pkgs/development/libraries/libctl/default.nix b/pkgs/development/libraries/libctl/default.nix new file mode 100644 index 00000000000..d7fed2415df --- /dev/null +++ b/pkgs/development/libraries/libctl/default.nix @@ -0,0 +1,31 @@ +{ lib +, stdenv +, fetchFromGitHub +, autoreconfHook +, gfortran +, guile +, pkg-config +}: + +stdenv.mkDerivation rec { + pname = "libctl"; + version = "4.5.1"; + + src = fetchFromGitHub { + owner = "NanoComp"; + repo = pname; + rev = "v${version}"; + sha256 = "uOydBWYPXSBUi+4MM6FNx6B5l2to7Ny9Uc1MMTV9bGA="; + }; + + nativeBuildInputs = [ autoreconfHook gfortran guile pkg-config ]; + + configureFlags = [ "--enable-shared" ]; + + meta = with lib; { + description = "Guile-based library for supporting flexible control files in scientific simulations"; + homepage = "https://github.com/NanoComp/libctl"; + license = licenses.gpl2Only; + maintainers = with maintainers; [ carpinchomug ]; + }; +} diff --git a/pkgs/development/libraries/libdrm/default.nix b/pkgs/development/libraries/libdrm/default.nix index 731039e26a0..e08a4673248 100644 --- a/pkgs/development/libraries/libdrm/default.nix +++ b/pkgs/development/libraries/libdrm/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation rec { pname = "libdrm"; - version = "2.4.109"; + version = "2.4.110"; src = fetchurl { url = "https://dri.freedesktop.org/${pname}/${pname}-${version}.tar.xz"; - sha256 = "09kzrdsd14zr0i3izvi5mck4vqccl3c9hr84r9i4is0zikh554v2"; + sha256 = "0dwpry9m5l27dlhq48j4bsiqwm0247cxdqwv3b7ddmkynk2f9kpf"; }; outputs = [ "out" "dev" "bin" ]; diff --git a/pkgs/development/libraries/libgbinder/default.nix b/pkgs/development/libraries/libgbinder/default.nix index f2ecf94053b..e5a3b79ba77 100644 --- a/pkgs/development/libraries/libgbinder/default.nix +++ b/pkgs/development/libraries/libgbinder/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "libgbinder"; - version = "1.1.16"; + version = "1.1.19"; src = fetchFromGitHub { owner = "mer-hybris"; repo = pname; rev = version; - sha256 = "sha256-g+3yRRiTv2l7ZpJc5a6tOPsErKjdALomAWmYHErdfIQ="; + sha256 = "sha256-HTmNoTGyFtOXRy7Y/ZnEgTa2GW6/+TeZxZo7c7ksNtc="; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/development/libraries/libgee/default.nix b/pkgs/development/libraries/libgee/default.nix index 1a40d1f17b4..b34790d59c7 100644 --- a/pkgs/development/libraries/libgee/default.nix +++ b/pkgs/development/libraries/libgee/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "libgee"; - version = "0.20.4"; + version = "0.20.5"; outputs = [ "out" "dev" ]; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "03nyf8n7i7f67fsh220g52slmihdk1lv4iwspm7xmkgrj3rink2j"; + sha256 = "MYY6iVfVpyf5BnSVyr8KCIn6XT1EYm5UCUMxGI1cFRg="; }; doCheck = true; diff --git a/pkgs/development/libraries/libnbd/default.nix b/pkgs/development/libraries/libnbd/default.nix index 3988a79c325..ba21e2206a8 100644 --- a/pkgs/development/libraries/libnbd/default.nix +++ b/pkgs/development/libraries/libnbd/default.nix @@ -6,16 +6,17 @@ , perl , libxml2 , fuse +, fuse3 , gnutls }: stdenv.mkDerivation rec { pname = "libnbd"; - version = "1.9.5"; + version = "1.12.2"; src = fetchurl { - url = "https://download.libguestfs.org/libnbd/${lib.versions.majorMinor version}-development/${pname}-${version}.tar.gz"; - hash = "sha256-BnMoxIiuwhqcwVr3AwAIFgZPcFsIg55N66ZwWMTUnCw="; + url = "https://download.libguestfs.org/libnbd/${lib.versions.majorMinor version}-stable/${pname}-${version}.tar.gz"; + hash = "sha256-57veJapt72LkP02wO4c1nDdHmnodqfT+rKPNDeTGQPM="; }; nativeBuildInputs = [ @@ -26,6 +27,7 @@ stdenv.mkDerivation rec { buildInputs = [ fuse + fuse3 gnutls libxml2 ]; @@ -55,7 +57,6 @@ stdenv.mkDerivation rec { platforms = with platforms; linux; }; } -# TODO: NBD URI support apparently is not enabled # TODO: package the 1.6-stable version too # TODO: git version needs ocaml # TODO: bindings for go, ocaml and python diff --git a/pkgs/development/libraries/libnfs/default.nix b/pkgs/development/libraries/libnfs/default.nix index 4e12553b00b..dd442b2cd4b 100644 --- a/pkgs/development/libraries/libnfs/default.nix +++ b/pkgs/development/libraries/libnfs/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "libnfs"; - version = "4.0.0"; + version = "5.0.1"; src = fetchFromGitHub { owner = "sahlberg"; repo = "libnfs"; rev = "libnfs-${version}"; - sha256 = "0i27wd4zvhjz7620q043p4d4mkx8zv2yz9adm1byin47dynahyda"; + sha256 = "sha256-5jyY7hqEhBPiQ8pNd+mRTEc4brht4ID7PoV7O2RFNQA="; }; nativeBuildInputs = [ autoreconfHook ]; diff --git a/pkgs/development/libraries/libpng/default.nix b/pkgs/development/libraries/libpng/default.nix index aeb3fcba06f..2293dfc00a0 100644 --- a/pkgs/development/libraries/libpng/default.nix +++ b/pkgs/development/libraries/libpng/default.nix @@ -11,7 +11,7 @@ let whenPatched = lib.optionalString apngSupport; in stdenv.mkDerivation rec { - name = "libpng" + whenPatched "-apng" + "-${version}"; + pname = "libpng" + whenPatched "-apng"; version = "1.6.37"; src = fetchurl { diff --git a/pkgs/development/libraries/libqalculate/default.nix b/pkgs/development/libraries/libqalculate/default.nix index bb70ffcd32a..55132d15523 100644 --- a/pkgs/development/libraries/libqalculate/default.nix +++ b/pkgs/development/libraries/libqalculate/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { pname = "libqalculate"; - version = "4.0.0"; + version = "4.1.0"; src = fetchFromGitHub { owner = "qalculate"; repo = "libqalculate"; rev = "v${version}"; - sha256 = "sha256-aRHwkdAbM164diIAIyBp1Kt6u/GLyCWTtwF4eFaWbGU="; + sha256 = "sha256-P3mb5HEj9gHq2mABdIRxF6ZukrPd70sy0DRLT0qKDqk="; }; outputs = [ "out" "dev" "doc" ]; diff --git a/pkgs/development/libraries/libqmi/default.nix b/pkgs/development/libraries/libqmi/default.nix index c3c9bf6947e..0906d7b967c 100644 --- a/pkgs/development/libraries/libqmi/default.nix +++ b/pkgs/development/libraries/libqmi/default.nix @@ -15,13 +15,13 @@ stdenv.mkDerivation rec { pname = "libqmi"; - version = "1.30.2"; + version = "1.30.4"; outputs = [ "out" "dev" "devdoc" ]; src = fetchurl { url = "https://www.freedesktop.org/software/libqmi/${pname}-${version}.tar.xz"; - sha256 = "sha256-vgHs4OosIZTL6ldEv1qvBsBLpft+x4h6ExFsdtEU/t0="; + sha256 = "sha256-ANfaMKT40RhfN8uiic+vHfzQSljy921qz99bhTEtbtY="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/libressl/default.nix b/pkgs/development/libraries/libressl/default.nix index 7a2718c0153..1ad63db733d 100644 --- a/pkgs/development/libraries/libressl/default.nix +++ b/pkgs/development/libraries/libressl/default.nix @@ -86,12 +86,8 @@ let }; in { - libressl_3_2 = generic { - version = "3.2.7"; - sha256 = "112bjfrwwqlk0lak7fmfhcls18ydf62cp7gxghf4gklpfl1zyckw"; - }; libressl_3_4 = generic { - version = "3.4.2"; - sha256 = "sha256-y4LKfVRzNpFzUvvSPbL8SDxsRNNRV7MngCFOx0GXs84="; + version = "3.4.3"; + sha256 = "sha256-/4i//jVIGLPM9UXjyv5FTFAxx6dyFwdPUzJx1jw38I0="; }; } diff --git a/pkgs/development/libraries/librsvg/default.nix b/pkgs/development/libraries/librsvg/default.nix index 1de6090b146..81cad37351a 100644 --- a/pkgs/development/libraries/librsvg/default.nix +++ b/pkgs/development/libraries/librsvg/default.nix @@ -25,13 +25,13 @@ stdenv.mkDerivation rec { pname = "librsvg"; - version = "2.52.5"; + version = "2.52.6"; outputs = [ "out" "dev" "installedTests" ]; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "QHy7q1GBN+oYo/MiC+oYD77nXz5b1roQp6hiwab3TYI="; + sha256 = "o/k5oeajpgQIJEYy0DI/jDsg60t7AAU24uW9k7jv+q0="; }; cargoVendorDir = "vendor"; diff --git a/pkgs/development/libraries/libsigsegv/default.nix b/pkgs/development/libraries/libsigsegv/default.nix index bc36a12eea8..84c2f19e5e2 100644 --- a/pkgs/development/libraries/libsigsegv/default.nix +++ b/pkgs/development/libraries/libsigsegv/default.nix @@ -4,11 +4,11 @@ stdenv.mkDerivation rec { pname = "libsigsegv"; - version = "2.13"; + version = "2.14"; src = fetchurl { url = "mirror://gnu/libsigsegv/libsigsegv-${version}.tar.gz"; - sha256 = "sha256-vnjuQXawX3x1/wMpjYSHTbkPS2ydVQPw2hIms6PEgRk="; + sha256 = "sha256-zaw5QYAzZM+BqQhJm+t5wgDq1gtrW0DK0ST9HgbKopU="; }; patches = if enableSigbusFix then [ ./sigbus_fix.patch ] else null; diff --git a/pkgs/development/libraries/libtiff/default.nix b/pkgs/development/libraries/libtiff/default.nix index 5f34a80d253..1371345ddd7 100644 --- a/pkgs/development/libraries/libtiff/default.nix +++ b/pkgs/development/libraries/libtiff/default.nix @@ -1,5 +1,6 @@ { lib, stdenv , fetchurl +, fetchpatch , autoreconfHook , pkg-config @@ -27,6 +28,21 @@ stdenv.mkDerivation rec { # libc++abi 11 has an `#include <version>`, this picks up files name # `version` in the project's include paths ./rename-version.patch + (fetchpatch { + name = "CVE-2022-22844.patch"; + url = "https://gitlab.com/libtiff/libtiff/-/commit/03047a26952a82daaa0792957ce211e0aa51bc64.patch"; + sha256 = "0cfih55f5qpc84mvlwsffik80bgz6drkflkhrdyqq8m84jw3mbwb"; + }) + (fetchpatch { + name = "CVE-2022-0561.patch"; + url = "https://gitlab.com/libtiff/libtiff/-/commit/eecb0712f4c3a5b449f70c57988260a667ddbdef.patch"; + sha256 = "0m57fdxyvhhr9cc260lvkkn2g4zr4n4v9nricc6lf9h6diagd7mk"; + }) + (fetchpatch { + name = "CVE-2022-0562.patch"; + url = "https://gitlab.com/libtiff/libtiff/-/commit/561599c99f987dc32ae110370cfdd7df7975586b.patch"; + sha256 = "0ycirjjc1vigj03kwjb92n6jszsl9p17ccw5hry7lli9gxyyr0an"; + }) ]; postPatch = '' diff --git a/pkgs/development/libraries/libwacom/default.nix b/pkgs/development/libraries/libwacom/default.nix index 2f9afff56d8..1517cf97078 100644 --- a/pkgs/development/libraries/libwacom/default.nix +++ b/pkgs/development/libraries/libwacom/default.nix @@ -12,7 +12,7 @@ stdenv.mkDerivation rec { pname = "libwacom"; - version = "1.99.1"; + version = "2.0.0"; outputs = [ "out" "dev" ]; @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { owner = "linuxwacom"; repo = "libwacom"; rev = "libwacom-${version}"; - sha256 = "sha256-WGW/4m+BTe6dEigUcuUIZjoTeamInW6zrtrlaqKM6Js="; + sha256 = "sha256-k8pEgEu+oWNa0rI47osVPKaZGxgwX/ENaz9jPrQXy0E="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/libxkbcommon/default.nix b/pkgs/development/libraries/libxkbcommon/default.nix index 25d2d89add0..7bcc62af6ec 100644 --- a/pkgs/development/libraries/libxkbcommon/default.nix +++ b/pkgs/development/libraries/libxkbcommon/default.nix @@ -21,11 +21,11 @@ stdenv.mkDerivation rec { pname = "libxkbcommon"; - version = "1.3.1"; + version = "1.4.0"; src = fetchurl { url = "https://xkbcommon.org/download/${pname}-${version}.tar.xz"; - sha256 = "0d4jzq0zv1xmng0z0q5lb4rz03ikgxdwi68k3r70ac16gb911ixk"; + sha256 = "0ca00awfzvxiznvd4mgwgxyqxiwvi07j5xxmg5z0l47rcd9fqv0h"; }; outputs = [ "out" "dev" "doc" ]; diff --git a/pkgs/development/libraries/libxml2/default.nix b/pkgs/development/libraries/libxml2/default.nix index bc11c9cfea1..3b7cae36a0e 100644 --- a/pkgs/development/libraries/libxml2/default.nix +++ b/pkgs/development/libraries/libxml2/default.nix @@ -1,20 +1,37 @@ -{ stdenv, lib, fetchurl, fetchpatch -, zlib, xz, libintl, python, gettext, ncurses, findXMLCatalogs +{ stdenv +, lib +, fetchurl +, zlib +, pkg-config +, autoreconfHook +, xz +, libintl +, python +, gettext +, ncurses +, findXMLCatalogs , libiconv , pythonSupport ? enableShared && stdenv.buildPlatform == stdenv.hostPlatform -, icuSupport ? false, icu ? null +, icuSupport ? false +, icu , enableShared ? stdenv.hostPlatform.libc != "msvcrt" && !stdenv.hostPlatform.isStatic , enableStatic ? !enableShared +, gnome }: stdenv.mkDerivation rec { pname = "libxml2"; - version = "2.9.12"; + version = "2.9.13"; + + outputs = [ "bin" "dev" "out" "man" "doc" ] + ++ lib.optional pythonSupport "py" + ++ lib.optional (enableStatic && enableShared) "static"; src = fetchurl { - url = "http://xmlsoft.org/sources/${pname}-${version}.tar.gz"; - sha256 = "14hxwzmf5xqppx77z7i0ni9lpzg1a84dqpf8j8l1fvy570g6imn8"; + url = "mirror://gnome/sources/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; + sha256 = "J2EwYC0S/khOzANEfuXnWdBGVVj7yda9FE43RTBuvw4="; }; + patches = [ # Upstream bugs: # https://bugzilla.gnome.org/show_bug.cgi?id=789714 @@ -28,62 +45,65 @@ stdenv.mkDerivation rec { # https://github.com/NixOS/nixpkgs/pull/63174 # https://github.com/NixOS/nixpkgs/pull/72342 ./utf8-xmlErrorFuncHandler.patch - - # Work around lxml API misuse. - # https://gitlab.gnome.org/GNOME/libxml2/issues/255 - (fetchpatch { - url = "https://gitlab.gnome.org/GNOME/libxml2/commit/85b1792e37b131e7a51af98a37f92472e8de5f3f.patch"; - sha256 = "epqlNs2S0Zczox3KyCB6R2aJKh87lXydlZ0x6tLHweE="; - }) ]; - outputs = [ "bin" "dev" "out" "man" "doc" ] - ++ lib.optional pythonSupport "py" - ++ lib.optional (enableStatic && enableShared) "static"; - strictDeps = true; - buildInputs = lib.optional pythonSupport python - ++ lib.optional (pythonSupport && python?isPy2 && python.isPy2) gettext - ++ lib.optional (pythonSupport && python?isPy3 && python.isPy3) ncurses - ++ lib.optional (stdenv.isDarwin && - pythonSupport && python?isPy2 && python.isPy2) libintl + nativeBuildInputs = [ + pkg-config + autoreconfHook + ]; + + buildInputs = lib.optionals pythonSupport [ + python + ] ++ lib.optionals (pythonSupport && python?isPy2 && python.isPy2) [ + gettext + ] ++ lib.optionals (pythonSupport && python?isPy3 && python.isPy3) [ + ncurses + ] ++ lib.optionals (stdenv.isDarwin && pythonSupport && python?isPy2 && python.isPy2) [ + libintl + ] ++ lib.optionals stdenv.isFreeBSD [ # Libxml2 has an optional dependency on liblzma. However, on impure # platforms, it may end up using that from /usr/lib, and thus lack a # RUNPATH for that, leading to undefined references for its users. - ++ lib.optional stdenv.isFreeBSD xz; + xz + ]; - propagatedBuildInputs = [ zlib findXMLCatalogs ] - ++ lib.optional stdenv.isDarwin libiconv - ++ lib.optional icuSupport icu; + propagatedBuildInputs = [ + zlib + findXMLCatalogs + ] ++ lib.optionals stdenv.isDarwin [ + libiconv + ] ++ lib.optionals icuSupport [ + icu + ]; configureFlags = [ - "--exec_prefix=$dev" + "--exec-prefix=${placeholder "dev"}" (lib.enableFeature enableStatic "static") (lib.enableFeature enableShared "shared") (lib.withFeature icuSupport "icu") (lib.withFeatureAs pythonSupport "python" python) ]; - preConfigure = lib.optionalString (lib.versionAtLeast stdenv.hostPlatform.darwinMinVersion "11") '' - MACOSX_DEPLOYMENT_TARGET=10.16 - ''; + installFlags = lib.optionals pythonSupport [ + "pythondir=\"${placeholder "py"}/${python.sitePackages}\"" + ]; enableParallelBuilding = true; - # disable test that's problematic with newer pythons: see - # https://mail.gnome.org/archives/xml/2017-August/msg00014.html - preCheck = lib.optionalString (pythonSupport && !(python?pythonOlder && python.pythonOlder "3.5")) '' - echo "" > python/tests/tstLastError.py - ''; - - doCheck = (stdenv.hostPlatform == stdenv.buildPlatform) && !stdenv.isDarwin && + doCheck = + (stdenv.hostPlatform == stdenv.buildPlatform) && + !stdenv.isDarwin && stdenv.hostPlatform.libc != "musl"; - preInstall = lib.optionalString pythonSupport - ''substituteInPlace python/libxml2mod.la --replace "${python}" "$py"''; - installFlags = lib.optional pythonSupport - "pythondir=\"${placeholder "py"}/lib/${python.libPrefix}/site-packages\""; + preConfigure = lib.optionalString (lib.versionAtLeast stdenv.hostPlatform.darwinMinVersion "11") '' + MACOSX_DEPLOYMENT_TARGET=10.16 + ''; + + preInstall = lib.optionalString pythonSupport '' + substituteInPlace python/libxml2mod.la --replace "$dev/${python.sitePackages}" "$py/${python.sitePackages}" + ''; postFixup = '' moveToOutput bin/xml2-config "$dev" @@ -93,13 +113,21 @@ stdenv.mkDerivation rec { moveToOutput lib/libxml2.a "$static" ''; - passthru = { inherit version; pythonSupport = pythonSupport; }; + passthru = { + inherit version; + pythonSupport = pythonSupport; + + updateScript = gnome.updateScript { + packageName = pname; + versionPolicy = "none"; + }; + }; - meta = { + meta = with lib; { homepage = "http://xmlsoft.org/"; - description = "An XML parsing library for C"; - license = lib.licenses.mit; - platforms = lib.platforms.all; - maintainers = [ lib.maintainers.eelco ]; + description = "XML parsing library for C"; + license = licenses.mit; + platforms = platforms.all; + maintainers = with maintainers; [ eelco jtojnar ]; }; } diff --git a/pkgs/development/libraries/libxslt/default.nix b/pkgs/development/libraries/libxslt/default.nix index 3993b3f73e1..ac4dd749233 100644 --- a/pkgs/development/libraries/libxslt/default.nix +++ b/pkgs/development/libraries/libxslt/default.nix @@ -1,38 +1,60 @@ -{ lib, stdenv, fetchurl +{ lib +, stdenv +, fetchurl , pkg-config -, libxml2, findXMLCatalogs, gettext, python, libgcrypt +, autoreconfHook +, libxml2 +, findXMLCatalogs +, gettext +, python +, ncurses +, libgcrypt , cryptoSupport ? false , pythonSupport ? stdenv.buildPlatform == stdenv.hostPlatform +, gnome }: stdenv.mkDerivation rec { pname = "libxslt"; - version = "1.1.34"; + version = "1.1.35"; + + outputs = [ "bin" "dev" "out" "man" "doc" ] ++ lib.optional pythonSupport "py"; src = fetchurl { - url = "http://xmlsoft.org/sources/${pname}-${version}.tar.gz"; - sha256 = "0zrzz6kjdyavspzik6fbkpvfpbd25r2qg6py5nnjaabrsr3bvccq"; + url = "mirror://gnome/sources/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; + sha256 = "gkfzPpqHLGrIWapFAYvExNALl+L+rJ7rwQyTzh803Xk="; }; - outputs = [ "bin" "dev" "out" "man" "doc" ] ++ lib.optional pythonSupport "py"; - nativeBuildInputs = [ pkg-config + autoreconfHook ]; - buildInputs = [ libxml2.dev ] - ++ lib.optional stdenv.isDarwin gettext - ++ lib.optionals pythonSupport [ libxml2.py python ] - ++ lib.optionals cryptoSupport [ libgcrypt ]; + buildInputs = [ + libxml2.dev + ] ++ lib.optional stdenv.isDarwin [ + gettext + ] ++ lib.optionals pythonSupport [ + libxml2.py + python + ncurses + ] ++ lib.optionals cryptoSupport [ + libgcrypt + ]; - propagatedBuildInputs = [ findXMLCatalogs ]; + propagatedBuildInputs = [ + findXMLCatalogs + ]; configureFlags = [ "--without-debug" "--without-mem-debug" "--without-debugger" - ] ++ lib.optional pythonSupport "--with-python=${python}" - ++ lib.optional (!cryptoSupport) "--without-crypto"; + ] ++ lib.optionals pythonSupport [ + "--with-python=${python}" + ] ++ lib.optionals (!cryptoSupport) [ + "--without-crypto" + ]; postFixup = '' moveToOutput bin/xslt-config "$dev" @@ -46,6 +68,11 @@ stdenv.mkDerivation rec { passthru = { inherit pythonSupport; + + updateScript = gnome.updateScript { + packageName = pname; + versionPolicy = "none"; + }; }; meta = with lib; { @@ -53,7 +80,7 @@ stdenv.mkDerivation rec { description = "A C library and tools to do XSL transformations"; license = licenses.mit; platforms = platforms.all; - maintainers = [ maintainers.eelco ]; - broken = !(pythonSupport -> libxml2.pythonSupport); # see #73102 for why this is not an assert + maintainers = with maintainers; [ eelco jtojnar ]; + broken = pythonSupport && !libxml2.pythonSupport; # see #73102 for why this is not an assert }; } diff --git a/pkgs/development/libraries/lime/default.nix b/pkgs/development/libraries/lime/default.nix index 6d6e8c519de..7e7edff6bff 100644 --- a/pkgs/development/libraries/lime/default.nix +++ b/pkgs/development/libraries/lime/default.nix @@ -11,7 +11,7 @@ stdenv.mkDerivation rec { pname = "lime"; - version = "5.0.0"; + version = "5.0.53"; src = fetchFromGitLab { domain = "gitlab.linphone.org"; @@ -19,7 +19,7 @@ stdenv.mkDerivation rec { group = "BC"; repo = pname; rev = version; - sha256 = "sha256-11vvvA+pud/eOyYsbRKVvGfiyhwdhNPfRQSfaquUro8="; + sha256 = "sha256-M+KdauIVsN3c+cEPw4CaMzXnQZwAPNXeJCriuk9NCWM="; }; buildInputs = [ bctoolbox soci belle-sip sqlite boost ]; diff --git a/pkgs/development/libraries/lpcnetfreedv/default.nix b/pkgs/development/libraries/lpcnetfreedv/default.nix index ac12d3a5fd6..33b295b9a1e 100644 --- a/pkgs/development/libraries/lpcnetfreedv/default.nix +++ b/pkgs/development/libraries/lpcnetfreedv/default.nix @@ -30,5 +30,6 @@ in stdenv.mkDerivation rec { description = "Experimental Neural Net speech coding for FreeDV"; license = licenses.bsd3; maintainers = with maintainers; [ mvs ]; + platforms = platforms.all; }; } diff --git a/pkgs/development/libraries/mesa/default.nix b/pkgs/development/libraries/mesa/default.nix index 1fb573931b6..23163763ed9 100644 --- a/pkgs/development/libraries/mesa/default.nix +++ b/pkgs/development/libraries/mesa/default.nix @@ -33,7 +33,7 @@ with lib; let # Release calendar: https://www.mesa3d.org/release-calendar.html # Release frequency: https://www.mesa3d.org/releasing.html#schedule - version = "21.3.5"; + version = "21.3.7"; branch = versions.major version; self = stdenv.mkDerivation { @@ -47,18 +47,13 @@ self = stdenv.mkDerivation { "ftp://ftp.freedesktop.org/pub/mesa/${version}/mesa-${version}.tar.xz" "ftp://ftp.freedesktop.org/pub/mesa/older-versions/${branch}.x/${version}/mesa-${version}.tar.xz" ]; - sha256 = "0k2ary16ixsrp65m2n5djpr51nbwdgzpv81pfrnqbvk44jfjlfyr"; + sha256 = "0ggw3s514z6szasbiy4dv5mdi689121yy2xly2g21gv1mavrvyml"; }; # TODO: # revive ./dricore-gallium.patch when it gets ported (from Ubuntu), as it saved # ~35 MB in $drivers; watch https://launchpad.net/ubuntu/+source/mesa/+changelog patches = [ - # To fix flickering on Intel GPUs (iris), see https://github.com/NixOS/nixpkgs/issues/153377: - (fetchpatch { - url = "https://gitlab.freedesktop.org/mesa/mesa/-/commit/07dc3d4238e57901ccf98e0b506d9aad2c86b9d9.diff"; - sha256 = "sha256-3fa1qHJes3x1/iXsxfjgy9HnEGlOyFtJatSkU1a3XDI="; - }) # fixes pkgsMusl.mesa build ./musl.patch (fetchpatch { diff --git a/pkgs/development/libraries/mysocketw/default.nix b/pkgs/development/libraries/mysocketw/default.nix index 62bd7cea1a1..32987d64992 100644 --- a/pkgs/development/libraries/mysocketw/default.nix +++ b/pkgs/development/libraries/mysocketw/default.nix @@ -1,27 +1,38 @@ -{ lib, stdenv, fetchFromGitHub, openssl, cmake }: +{ lib +, stdenv +, fetchFromGitHub +, openssl +, cmake +}: stdenv.mkDerivation rec { pname = "mysocketw"; - version = "3.10.27"; + version = "3.11.0"; src = fetchFromGitHub { owner = "RigsOfRods"; repo = "socketw"; rev = version; - sha256 = "0xqcgwb1lyc2d8834sq5adbmggyn6vvb26jw20862sxa15j0qfd4"; + hash = "sha256-mpfhmKE2l59BllkOjmURIfl17lAakXpmGh2x9SFSaAo="; }; - nativeBuildInputs = [ cmake ]; - buildInputs = [ openssl ]; + nativeBuildInputs = [ + cmake + ]; + + buildInputs = [ + openssl + ]; postPatch = lib.optionalString stdenv.isDarwin '' substituteInPlace src/Makefile \ --replace -Wl,-soname, -Wl,-install_name,$out/lib/ ''; - meta = { + meta = with lib; { description = "Cross platform (Linux/FreeBSD/Unix/Win32) streaming socket C++"; - license = lib.licenses.lgpl21Plus; - platforms = lib.platforms.all; + homepage = "https://github.com/RigsOfRods/socketw"; + license = licenses.lgpl21Plus; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/libraries/ncurses/default.nix b/pkgs/development/libraries/ncurses/default.nix index efab246bb1f..2740b95986c 100644 --- a/pkgs/development/libraries/ncurses/default.nix +++ b/pkgs/development/libraries/ncurses/default.nix @@ -13,7 +13,7 @@ stdenv.mkDerivation rec { # Note the revision needs to be adjusted. version = "6.3"; - name = "ncurses-${version}" + lib.optionalString (abiVersion == "5") "-abi5-compat"; + pname = "ncurses" + lib.optionalString (abiVersion == "5") "-abi5-compat"; # We cannot use fetchFromGitHub (which calls fetchzip) # because we need to be able to use fetchurlBoot. diff --git a/pkgs/development/libraries/neon/default.nix b/pkgs/development/libraries/neon/default.nix index a39ece28aae..1521c1a6389 100644 --- a/pkgs/development/libraries/neon/default.nix +++ b/pkgs/development/libraries/neon/default.nix @@ -14,12 +14,12 @@ let in stdenv.mkDerivation rec { - version = "0.31.2"; + version = "0.32.2"; pname = "neon"; src = fetchurl { url = "https://notroj.github.io/${pname}/${pname}-${version}.tar.gz"; - sha256 = "0y46dbhiblcvg8k41bdydr3fivghwk73z040ki5825d24ynf67ng"; + sha256 = "sha256-mGVmRoxilfxdD7FBpZgeMcn4LuOOk4N0q+2Ece8vsoY="; }; patches = optionals stdenv.isDarwin [ ./darwin-fix-configure.patch ]; diff --git a/pkgs/development/libraries/nettle/generic.nix b/pkgs/development/libraries/nettle/generic.nix index 348faf56b56..44afdf45513 100644 --- a/pkgs/development/libraries/nettle/generic.nix +++ b/pkgs/development/libraries/nettle/generic.nix @@ -5,9 +5,9 @@ }: stdenv.mkDerivation { - name = "nettle-${version}"; + pname = "nettle"; - inherit src; + inherit version src; outputs = [ "out" "dev" ]; outputBin = "dev"; diff --git a/pkgs/development/libraries/nss/default.nix b/pkgs/development/libraries/nss/default.nix index e92b3dec07b..d17f4c4a783 100644 --- a/pkgs/development/libraries/nss/default.nix +++ b/pkgs/development/libraries/nss/default.nix @@ -27,7 +27,7 @@ let # It will rebuild itself using the version of this package (NSS) and if # an update is required do the required changes to the expression. # Example: nix-shell ./maintainers/scripts/update.nix --argstr package cacert - version = "3.74"; + version = "3.75"; in stdenv.mkDerivation rec { @@ -36,7 +36,7 @@ stdenv.mkDerivation rec { src = fetchurl { url = "mirror://mozilla/security/nss/releases/NSS_${lib.replaceStrings [ "." ] [ "_" ] version}_RTM/src/${pname}-${version}.tar.gz"; - sha256 = "0mnhdkm4galhpvfz4rv0918jwmjlwkvcvb1f5va8f3zlz48qi4l8"; + sha256 = "10l5qn68gly2l4ifv0v6by1qc8nsmhra08nm9m7n913jh83iamzx"; }; depsBuildBuild = [ buildPackages.stdenv.cc ]; diff --git a/pkgs/development/libraries/opendht/default.nix b/pkgs/development/libraries/opendht/default.nix index fa9fc1f87ee..2cd76a7ca78 100644 --- a/pkgs/development/libraries/opendht/default.nix +++ b/pkgs/development/libraries/opendht/default.nix @@ -21,13 +21,13 @@ stdenv.mkDerivation rec { pname = "opendht"; - version = "2.3.2"; + version = "2.3.5"; src = fetchFromGitHub { owner = "savoirfairelinux"; repo = "opendht"; rev = version; - sha256 = "sha256-LevS9euBAFkI1ll79uqmVaRR/6FH6Z4cypHqvCIWxgU="; + sha256 = "sha256-GGaq8ziOCUDMxILq2QYUkSP4usBjbufbHwQF4Pr6hHw="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/openh264/default.nix b/pkgs/development/libraries/openh264/default.nix index 93fc495d385..42ae370cd90 100644 --- a/pkgs/development/libraries/openh264/default.nix +++ b/pkgs/development/libraries/openh264/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "openh264"; - version = "2.1.1"; + version = "2.2.0"; src = fetchFromGitHub { owner = "cisco"; repo = pname; rev = "v${version}"; - sha256 = "0ffav46pz3sbj92nipd62z03fibyqgclfq9w8lgr80s6za6zdk5s"; + sha256 = "sha256-l64xP39Uaislqh4D7oSxJiQGhXkklol4LgS9BVPbaGk="; }; nativeBuildInputs = [ nasm ]; diff --git a/pkgs/development/libraries/openssl/default.nix b/pkgs/development/libraries/openssl/default.nix index 390227cfe95..33ddbf7018c 100644 --- a/pkgs/development/libraries/openssl/default.nix +++ b/pkgs/development/libraries/openssl/default.nix @@ -186,8 +186,8 @@ in { }; openssl_1_1 = common rec { - version = "1.1.1m"; - sha256 = "sha256-+JGZvosjykX8fLnx2NPuZzEjGChq0DD1MWrKZGLbbJY="; + version = "1.1.1n"; + sha256 = "sha256-QNzrUaT2pSdb3g5r8g70uRv8Mu1XwFUuLo4VRjNysXo="; patches = [ ./1.1/nix-ssl-cert-file.patch @@ -201,8 +201,8 @@ in { }; openssl_3_0 = common { - version = "3.0.1"; - sha256 = "sha256-wxGthTNTvOeW7a0BqGLFCopYf2Ln4hAO9GWrU+ybBtE="; + version = "3.0.2"; + sha256 = "sha256-mOkczq1NR1auPJzeXgkZGo5YbZ9NUIOOfsCdZBHf22M="; patches = [ ./3.0/nix-ssl-cert-file.patch diff --git a/pkgs/development/libraries/orcania/default.nix b/pkgs/development/libraries/orcania/default.nix index 1058eaa1f63..2c43cfb4cc9 100644 --- a/pkgs/development/libraries/orcania/default.nix +++ b/pkgs/development/libraries/orcania/default.nix @@ -1,13 +1,13 @@ { lib, stdenv, fetchFromGitHub, cmake, check, subunit }: stdenv.mkDerivation rec { pname = "orcania"; - version = "2.2.1"; + version = "2.2.2"; src = fetchFromGitHub { owner = "babelouest"; repo = pname; rev = "v${version}"; - sha256 = "sha256-6Libn+S5c7sCmKGq8KojiUhI18zO37rgiiVwQxP3p4o="; + sha256 = "sha256-lrc4VEqmCp/P/h0+5/ix6tx4pjfkLy9BLBZtKYLlyGI="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/pango/default.nix b/pkgs/development/libraries/pango/default.nix index 964a3640871..3033b7df4e3 100644 --- a/pkgs/development/libraries/pango/default.nix +++ b/pkgs/development/libraries/pango/default.nix @@ -24,14 +24,14 @@ stdenv.mkDerivation rec { pname = "pango"; - version = "1.50.3"; + version = "1.50.4"; outputs = [ "bin" "out" "dev" ] ++ lib.optionals withDocs [ "devdoc" ]; src = fetchurl { url = "mirror://gnome/sources/${pname}/${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "St0F7fUcH7N1oczedJiRQSDiPLKA3XOVsa60QfGDikw="; + sha256 = "9K1j6H3CsUUwBUKk+wBNB6n5GzQVL64N2+UOzdhRwWI="; }; strictDeps = !withIntrospection; diff --git a/pkgs/development/libraries/pipewire/default.nix b/pkgs/development/libraries/pipewire/default.nix index d4dc4302139..d37e0a05086 100644 --- a/pkgs/development/libraries/pipewire/default.nix +++ b/pkgs/development/libraries/pipewire/default.nix @@ -20,7 +20,6 @@ , udev , libva , libsndfile -, SDL2 , vulkan-headers , vulkan-loader , webrtc-audio-processing @@ -129,7 +128,6 @@ let vulkan-headers vulkan-loader webrtc-audio-processing - SDL2 systemd ] ++ lib.optionals gstreamerSupport [ gst_all_1.gst-plugins-base gst_all_1.gstreamer ] ++ lib.optionals libcameraSupport [ libcamera libdrm ] @@ -169,6 +167,7 @@ let "-Dsession-managers=" "-Dvulkan=enabled" "-Dx11=${mesonEnableFeature x11Support}" + "-Dsdl2=disabled" # required only to build examples, causes dependency loop ]; # Fontconfig error: Cannot load default config file diff --git a/pkgs/development/libraries/plasma-wayland-protocols/default.nix b/pkgs/development/libraries/plasma-wayland-protocols/default.nix index fe148368b49..082702ec46f 100644 --- a/pkgs/development/libraries/plasma-wayland-protocols/default.nix +++ b/pkgs/development/libraries/plasma-wayland-protocols/default.nix @@ -7,11 +7,11 @@ mkDerivation rec { pname = "plasma-wayland-protocols"; - version = "1.5.0"; + version = "1.6.0"; src = fetchurl { url = "mirror://kde/stable/${pname}/${pname}-${version}.tar.xz"; - sha256 = "sha256-zMn8INehMO2/sjPDOxMldArAGyZAqjelxUTtv7oYqDM="; + sha256 = "sha256-t0/6yWnvBn5HGA50imejoYFrcVf/TqYg7UQy9Ztw8B8="; }; nativeBuildInputs = [ extra-cmake-modules ]; diff --git a/pkgs/development/libraries/polkit/default.nix b/pkgs/development/libraries/polkit/default.nix index 3a3199cbd7a..72907f7aedc 100644 --- a/pkgs/development/libraries/polkit/default.nix +++ b/pkgs/development/libraries/polkit/default.nix @@ -65,6 +65,12 @@ stdenv.mkDerivation rec { url = "https://gitlab.freedesktop.org/polkit/polkit/-/commit/a2bf5c9c83b6ae46cbd5c779d3055bff81ded683.patch"; sha256 = "162jkpg2myq0rb0s5k3nfr4pqwv9im13jf6vzj8p5l39nazg5i4s"; }) + # File descriptor leak allows an unprivileged user to cause a crash (CVE-2021-4115) + (fetchpatch { + name = "CVE-2021-4115.patch"; + url = "https://src.fedoraproject.org/rpms/polkit/raw/0a203bd46a1e2ec8cc4b3626840e2ea9d0d13a9a/f/CVE-2021-4115.patch"; + sha256 = "sha256-BivHVVpYB4Ies1YbBDyKwUmNlqq2D1MpMipH9/dZM54="; + }) ] ++ lib.optionals stdenv.hostPlatform.isMusl [ # Make netgroup support optional (musl does not have it) # Upstream MR: https://gitlab.freedesktop.org/polkit/polkit/merge_requests/10 diff --git a/pkgs/development/libraries/protolock/default.nix b/pkgs/development/libraries/protolock/default.nix index e364b907794..ef6338207e3 100644 --- a/pkgs/development/libraries/protolock/default.nix +++ b/pkgs/development/libraries/protolock/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "protolock"; - version = "0.15.2"; + version = "0.16.0"; src = fetchFromGitHub { owner = "nilslice"; repo = "protolock"; rev = "v${version}"; - sha256 = "sha256-cKrG8f8cabuGDN1gmBYleXcBqeJksdREiEy63UK/6J0="; + sha256 = "sha256-vWwRZVArmlTIGwD4zV3dEHN2kkoeCZuNIvjCBVAviPo="; }; - vendorSha256 = "sha256-2XbBiiiPvZCnlKUzGDLFnxA34N/LmHoPbvRKZckmhx4="; + vendorSha256 = "sha256-kgSJUSjY8kgrGCNDPgw1WA8KwAqI5koJQ0IcE+tC5nk="; doCheck = false; diff --git a/pkgs/development/libraries/qt-5/5.15/srcs-generated.json b/pkgs/development/libraries/qt-5/5.15/srcs-generated.json index 76c4237dcaf..8bf6386c4c6 100644 --- a/pkgs/development/libraries/qt-5/5.15/srcs-generated.json +++ b/pkgs/development/libraries/qt-5/5.15/srcs-generated.json @@ -1,8 +1,8 @@ { "qt3d": { "url": "https://invent.kde.org/qt/qt/qt3d.git", - "rev": "7edec6e014de27b9dd03f63875c471aac606a918", - "sha256": "0qv4vhciigqd8bnqzrs7y71ls7jx1p9cal2rh78m42qgskk1ci59" + "rev": "dba14d48611b9e9d59576172658779ab4a39b416", + "sha256": "1w2m1rm6mhj9qbanak36rqvc30x495zvj7mh2syy1yd29by0g5i8" }, "qtactiveqt": { "url": "https://invent.kde.org/qt/qt/qtactiveqt.git", @@ -16,8 +16,8 @@ }, "qtbase": { "url": "https://invent.kde.org/qt/qt/qtbase.git", - "rev": "c9fde86b0a2440133bc08f4811b6ca793be47f0a", - "sha256": "1fqhdkv3sp3nbzqi2a5wvxn5d4v0xcrq2bl609bdyj4nx367a8wp" + "rev": "d16bf02a11953dcac01dca73e6f3778f293adefe", + "sha256": "0rpyd5r60707lzfmfi3y501c7is1gzhh30bframsy8bwglck2hjj" }, "qtcharts": { "url": "https://invent.kde.org/qt/qt/qtcharts.git", @@ -26,8 +26,8 @@ }, "qtconnectivity": { "url": "https://invent.kde.org/qt/qt/qtconnectivity.git", - "rev": "69a87a9b831e36a578594a0a13130c384ad03121", - "sha256": "0ph07rdf9qfxnw3z2nqbmh6na65z0p2snmlzdw80amd7s0g255kw" + "rev": "5e9ca5d36d65dadb98ef90013a1dcf15fbd7ae26", + "sha256": "1lpiq3svlnj8f8apd12if11sng7k0l8y6vhr317srzz4dd77cfry" }, "qtdatavis3d": { "url": "https://invent.kde.org/qt/qt/qtdatavis3d.git", @@ -36,8 +36,8 @@ }, "qtdeclarative": { "url": "https://invent.kde.org/qt/qt/qtdeclarative.git", - "rev": "55324650f9e759a43dce927f823c9858574106c3", - "sha256": "0cxz4pqvb8l0wqpc4hr0xmc72csqf7dpbbzdqgil9nyyg21ihkz0" + "rev": "1d49a5b678957adde7e2db23a485a3f48157bc8f", + "sha256": "1wdpgh23mdn0nny9c837iyg9kszc3m4cdmaanf8glymkzn0rkd8w" }, "qtdoc": { "url": "https://invent.kde.org/qt/qt/qtdoc.git", @@ -101,8 +101,8 @@ }, "qtquickcontrols2": { "url": "https://invent.kde.org/qt/qt/qtquickcontrols2.git", - "rev": "be66bf9a5618c745d2a6ee2262967af6307b3b07", - "sha256": "11h3f3rb2kqgsw7njzhjwazw1k03v12i83irjndylafiaqw6c6ks" + "rev": "d8d6b14b9907adbc6ce307d52be34aaa761a58fa", + "sha256": "15c7nrvvn7qc3l7kdbl5wdpazqwv8zvg1aij2jvcrhbymn0zl3mc" }, "qtquicktimeline": { "url": "https://invent.kde.org/qt/qt/qtquicktimeline.git", @@ -146,8 +146,8 @@ }, "qtsvg": { "url": "https://invent.kde.org/qt/qt/qtsvg.git", - "rev": "24128cdf8bef53eddf31a5709bbbc46293006b1c", - "sha256": "0vinjcbq4saxhlmvb5i93bzgg30qc3j8r2qfwrzaxc4vmfhfgi56" + "rev": "728012f7762ecd5762d493f8796907c6456f31e7", + "sha256": "1ldizgybl4fp95xlzf103hqmsqdmr3jbx048jyxcb5gjd3pbwh7p" }, "qttools": { "url": "https://invent.kde.org/qt/qt/qttools.git", @@ -161,18 +161,18 @@ }, "qtvirtualkeyboard": { "url": "https://invent.kde.org/qt/qt/qtvirtualkeyboard.git", - "rev": "353b75b2e34bdae901625bbddf5c5e3f3e6c0de5", - "sha256": "12nv773zc05yrbai1z6i481yinih0kxcjzgm9pa0580qz69gd9a5" + "rev": "98d1fd864cbb6c7c012c4139118808af110fb8f0", + "sha256": "07xjmhca7z5bva03zk73d948qz0a3wnn4kvyy6j4cnp3w5giz5kc" }, "qtwayland": { "url": "https://invent.kde.org/qt/qt/qtwayland.git", - "rev": "992833ca741efe8f533c61abfaf129a1d8bfcfee", - "sha256": "1w8mq38k6s0fncqv113bw1pc7g10ysfmsbyg23hxh9fr5q4ia4q7" + "rev": "214f7ab9d3384a4123f14d9f6cd0205cf0aaa794", + "sha256": "1qd64w5c16gmpgi936dfjc0pn1a1rbs752k8lfqv2xwysx7qkqwi" }, "qtwebchannel": { "url": "https://invent.kde.org/qt/qt/qtwebchannel.git", - "rev": "47be9a51b01d9fd9e7f6dca81e98d4eedcec6d38", - "sha256": "167rp43c86xr4grzxs4bl46y6sf1q9xa0641mgp4r94g2ipxyc1d" + "rev": "fa8b07105b5e274daaa8adcc129fa4aa0447f9f7", + "sha256": "0mggqa8kixknbm1p5i5lkrmkj1na3b2xflj011dkjbj8wb78i42n" }, "qtwebglplugin": { "url": "https://invent.kde.org/qt/qt/qtwebglplugin.git", @@ -181,8 +181,8 @@ }, "qtwebsockets": { "url": "https://invent.kde.org/qt/qt/qtwebsockets.git", - "rev": "e7883bc64440b1ff4666272ac6eb710ee4bc221b", - "sha256": "1rj99y1f0wn6g1m2k53xkni5v79zgq25yv8b9wx2bz0n2r9iasca" + "rev": "b13b56904b76e96ea52d0efe56395acc94b17d96", + "sha256": "047asrq7c44v7cn2d7c5zba47qzpsb6nidba77i2xn7gqlfv6z3b" }, "qtwebview": { "url": "https://invent.kde.org/qt/qt/qtwebview.git", diff --git a/pkgs/development/libraries/readline/readline-8.1-patches.nix b/pkgs/development/libraries/readline/readline-8.1-patches.nix index b8019fb3350..b2aaadf0e9b 100644 --- a/pkgs/development/libraries/readline/readline-8.1-patches.nix +++ b/pkgs/development/libraries/readline/readline-8.1-patches.nix @@ -1,4 +1,6 @@ # Automatically generated by `update-patch-set.sh'; do not edit. patch: [ +(patch "001" "0i4ikdqgcjnb40y2ss3lm09rq56zih5rzma3bib50dk3d1d4cak8") +(patch "002" "1p15sfx5xg5k4lam12lyd0givk7dfjddqpnb1jdp3c4clray0nz5") ] diff --git a/pkgs/development/libraries/readline/update-patch-set.sh b/pkgs/development/libraries/readline/update-patch-set.sh new file mode 120000 index 00000000000..d4f5cd2f312 --- /dev/null +++ b/pkgs/development/libraries/readline/update-patch-set.sh @@ -0,0 +1 @@ +../../../shells/bash/update-patch-set.sh \ No newline at end of file diff --git a/pkgs/development/libraries/science/astronomy/cfitsio/default.nix b/pkgs/development/libraries/science/astronomy/cfitsio/default.nix index 9f9545e52f3..3be249531bb 100644 --- a/pkgs/development/libraries/science/astronomy/cfitsio/default.nix +++ b/pkgs/development/libraries/science/astronomy/cfitsio/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "cfitsio"; - version = "4.0.0"; + version = "4.1.0"; src = fetchurl { url = "https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/cfitsio-${version}.tar.gz"; - sha256 = "sha256-sqjvugufhtPhvWGfZipHbsGBErTyfMRBzGgKTjd3Ql4="; + sha256 = "sha256-s2fGldKDGVjnFmkhw7NW1d+lGx7O5QW5dBa6OdG2wXo="; }; buildInputs = [ bzip2 zlib ]; diff --git a/pkgs/development/libraries/science/astronomy/stellarsolver/default.nix b/pkgs/development/libraries/science/astronomy/stellarsolver/default.nix index a214d28347d..933b972a4e7 100644 --- a/pkgs/development/libraries/science/astronomy/stellarsolver/default.nix +++ b/pkgs/development/libraries/science/astronomy/stellarsolver/default.nix @@ -3,13 +3,13 @@ mkDerivation rec { pname = "stellarsolver"; - version = "1.9"; + version = "2.0"; src = fetchFromGitHub { owner = "rlancaste"; repo = pname; rev = version; - sha256 = "sha256-PiRXNiemJ+UjVhmd2KPcTKJoDW9K9QBf62nkP1LlOfw="; + sha256 = "sha256-pqTSsey1CgOHiEm/C+7sTl9uGe3RVpL7Rdm04KgY+Z8="; }; nativeBuildInputs = [ cmake ]; diff --git a/pkgs/development/libraries/science/math/amd-blis/default.nix b/pkgs/development/libraries/science/math/amd-blis/default.nix index cba9c28164a..f0408730282 100644 --- a/pkgs/development/libraries/science/math/amd-blis/default.nix +++ b/pkgs/development/libraries/science/math/amd-blis/default.nix @@ -64,7 +64,7 @@ in stdenv.mkDerivation rec { description = "BLAS-compatible library optimized for AMD CPUs"; homepage = "https://developer.amd.com/amd-aocl/blas-library/"; license = licenses.bsd3; - maintainers = [ ]; + maintainers = [ maintainers.markuskowa ]; platforms = [ "x86_64-linux" ]; }; } diff --git a/pkgs/development/libraries/science/math/amd-libflame/default.nix b/pkgs/development/libraries/science/math/amd-libflame/default.nix index b28fa43a226..a5b65737941 100644 --- a/pkgs/development/libraries/science/math/amd-libflame/default.nix +++ b/pkgs/development/libraries/science/math/amd-libflame/default.nix @@ -6,8 +6,12 @@ , amd-blis , withOpenMP ? true +, blas64 ? false }: +# right now only LP64 is supported +assert !blas64; + stdenv.mkDerivation rec { pname = "amd-libflame"; version = "3.0"; @@ -26,6 +30,8 @@ stdenv.mkDerivation rec { ./add-lapacke.diff ]; + passthru = { inherit blas64; }; + nativeBuildInputs = [ gfortran python3 ]; buildInputs = [ amd-blis ]; diff --git a/pkgs/development/libraries/science/math/blas/default.nix b/pkgs/development/libraries/science/math/blas/default.nix index cfdc102e044..acb737836c0 100644 --- a/pkgs/development/libraries/science/math/blas/default.nix +++ b/pkgs/development/libraries/science/math/blas/default.nix @@ -1,4 +1,7 @@ -{ lib, stdenv, fetchurl, gfortran }: +{ lib, stdenv, fetchurl, cmake, gfortran +# Wether to build with ILP64 interface +, blas64 ? false +}: stdenv.mkDerivation rec { pname = "blas"; @@ -9,50 +12,19 @@ stdenv.mkDerivation rec { sha256 = "sha256-LjYNmcm9yEB6YYiMQKqFP7QhlCDruCZNtIbLiGBGirM="; }; - nativeBuildInputs = [ gfortran ]; + passthru = { inherit blas64; }; - configurePhase = '' - echo >make.inc "SHELL = ${stdenv.shell}" - echo >>make.inc "PLAT = _LINUX" - echo >>make.inc "FORTRAN = gfortran" - echo >>make.inc "OPTS = -O2 -fPIC" - echo >>make.inc "DRVOPTS = $$(OPTS)" - echo >>make.inc "NOOPT = -O0 -fPIC" - echo >>make.inc "LOADER = gfortran" - echo >>make.inc "LOADOPTS =" - echo >>make.inc "AR = gfortran" - echo >>make.inc "ARFLAGS = -shared -o" - echo >>make.inc "RANLIB = echo" - echo >>make.inc "BLASLIB = libblas.so.${version}" - ''; + nativeBuildInputs = [ cmake gfortran ]; - buildPhase = '' - make - echo >>make.inc "ARFLAGS = " - echo >>make.inc "BLASLIB = libblas.a" - echo >>make.inc "AR = ar rcs" - echo >>make.inc "RANLIB = ranlib" - make - ''; + cmakeFlags = [ "-DBUILD_SHARED_LIBS=ON" ] + ++ lib.optional blas64 "-DBUILD_INDEX64=ON"; - installPhase = - # FreeBSD's stdenv doesn't use Coreutils. - let dashD = if stdenv.isFreeBSD then "" else "-D"; in - (lib.optionalString stdenv.isFreeBSD "mkdir -p $out/lib ;") - + '' - install ${dashD} -m755 libblas.a "$out/lib/libblas.a" - install ${dashD} -m755 libblas.so.${version} "$out/lib/libblas.so.${version}" - ln -s libblas.so.${version} "$out/lib/libblas.so.3" - ln -s libblas.so.${version} "$out/lib/libblas.so" - # Write pkg-config alias. - # See also openblas/default.nix - mkdir $out/lib/pkgconfig - cat <<EOF > $out/lib/pkgconfig/blas.pc -Name: blas -Version: ${version} -Description: blas provided by the BLAS package. -Libs: -L$out/lib -lblas -EOF + postInstall = let + canonicalExtension = if stdenv.hostPlatform.isLinux + then "${stdenv.hostPlatform.extensions.sharedLibrary}.${lib.versions.major version}" + else stdenv.hostPlatform.extensions.sharedLibrary; + in lib.optionalString blas64 '' + ln -s $out/lib/libblas64${canonicalExtension} $out/lib/libblas${canonicalExtension} ''; preFixup = lib.optionalString stdenv.isDarwin '' @@ -62,10 +34,11 @@ EOF done ''; - meta = { + meta = with lib; { description = "Basic Linear Algebra Subprograms"; - license = lib.licenses.publicDomain; + license = licenses.publicDomain; + maintainers = [ maintainers.markuskowa ]; homepage = "http://www.netlib.org/blas/"; - platforms = lib.platforms.unix; + platforms = platforms.unix; }; } diff --git a/pkgs/development/libraries/science/math/cudnn/default.nix b/pkgs/development/libraries/science/math/cudnn/default.nix index 663d61494c7..d05cc3f90ec 100644 --- a/pkgs/development/libraries/science/math/cudnn/default.nix +++ b/pkgs/development/libraries/science/math/cudnn/default.nix @@ -1,23 +1,29 @@ # The following version combinations are supported: # * cuDNN 7.4.2, cudatoolkit 10.0 -# * cuDNN 7.6.5, cudatoolkit 10.2 -# * cuDNN 8.1.1, cudatoolkit 11.0-11.2 -# * cuDNN 8.3.0, cudatoolkit 11.0-11.5 +# * cuDNN 7.6.5, cudatoolkit 10.0-10.1 +# * cuDNN 8.1.1, cudatoolkit 10.2-11.2 +# * cuDNN 8.3.2, cudatoolkit 10.2-11.5 { callPackage +, cudatoolkit_10 , cudatoolkit_10_0 +, cudatoolkit_10_1 , cudatoolkit_10_2 +, cudatoolkit_11 , cudatoolkit_11_0 , cudatoolkit_11_1 , cudatoolkit_11_2 , cudatoolkit_11_3 , cudatoolkit_11_4 , cudatoolkit_11_5 +, fetchurl +, lib }: let generic = args: callPackage (import ./generic.nix (removeAttrs args [ "cudatoolkit" ])) { inherit (args) cudatoolkit; }; + urlPrefix = "https://developer.download.nvidia.com/compute/redist/cudnn"; in rec { # cuDNN 7.x @@ -25,53 +31,88 @@ rec { cudnn_7_4_cudatoolkit_10_0 = generic rec { version = "7.4.2"; cudatoolkit = cudatoolkit_10_0; - srcName = "cudnn-${cudatoolkit.majorVersion}-linux-x64-v7.4.2.24.tgz"; - sha256 = "18ys0apiz9afid2s6lvy9qbyi8g66aimb2a7ikl1f3dm09mciprf"; + # See https://docs.nvidia.com/deeplearning/cudnn/archives/cudnn_742/cudnn-support-matrix/index.html#cudnn-cuda-hardware-versions__table-cudnn-cuda-hardware-versions. + minCudaVersion = "9.2.88"; + maxCudaVersion = "10.0.99999"; + mkSrc = _: fetchurl { + url = "${urlPrefix}/v${version}/cudnn-10.0-linux-x64-v7.4.2.24.tgz"; + hash = "sha256-Lt/IagK1DRfojEeJVaMy5qHoF05+U6NFi06lH68C2qM="; + }; }; + # The only overlap between supported and packaged CUDA versions is 10.0. - # The `cudnn` alias still points to this in all-packages.nix. It should be - # upgraded at some point. - cudnn_7_6_cudatoolkit_10_2 = generic rec { + cudnn_7_6_cudatoolkit_10_0 = generic rec { version = "7.6.5"; - cudatoolkit = cudatoolkit_10_2; - srcName = "cudnn-${cudatoolkit.majorVersion}-linux-x64-v7.6.5.32.tgz"; - sha256 = "084c13vzjdkb5s1996yilybg6dgav1lscjr1xdcgvlmfrbr6f0k0"; + cudatoolkit = cudatoolkit_10_0; + # See https://docs.nvidia.com/deeplearning/cudnn/archives/cudnn_765/cudnn-support-matrix/index.html#cudnn-versions-763-765. + minCudaVersion = "9.2.148"; + maxCudaVersion = "10.1.243"; + mkSrc = cudatoolkit: fetchurl { + url = "${urlPrefix}/v${version}/cudnn-${cudatoolkit.majorVersion}-linux-x64-v7.6.5.32.tgz"; + hash = { + "10.0" = "sha256-KDVeOV8LK5OsLIO2E2CzW6bNA3fkTni+GXtrYbS0kro="; + "10.1" = "sha256-fq7IA5osMKsLx1jTA1iHZ2k972v0myJIWiwAvy4TbLM="; + }."${cudatoolkit.majorVersion}"; + }; }; - - cudnn_7_6_cudatoolkit_10 = cudnn_7_6_cudatoolkit_10_2; + cudnn_7_6_cudatoolkit_10_1 = cudnn_7_6_cudatoolkit_10_0.override { cudatoolkit = cudatoolkit_10_1; }; # cuDNN 8.x # cuDNN 8.1 is still used by tensorflow at the time of writing (2022-02-17). # See https://github.com/NixOS/nixpkgs/pull/158218 for more info. - cudnn_8_1_cudatoolkit_11_0 = generic rec { + cudnn_8_1_cudatoolkit_10_2 = generic rec { version = "8.1.1"; - cudatoolkit = cudatoolkit_11_0; - # 8.1.0 is compatible with CUDA 11.0-11.2: - # https://docs.nvidia.com/deeplearning/cudnn/archives/cudnn-811/support-matrix/index.html - srcName = "cudnn-11.2-linux-x64-v8.1.1.33.tgz"; - hash = "sha256-mKh4TpKGLyABjSDCgbMNSgzZUfk2lPZDPM9K6cUCumo="; + cudatoolkit = cudatoolkit_10_2; + # See https://docs.nvidia.com/deeplearning/cudnn/archives/cudnn-811/support-matrix/index.html#cudnn-versions-810-811. + minCudaVersion = "10.2.00000"; + maxCudaVersion = "11.2.99999"; + mkSrc = cudatoolkit: + let v = if lib.versions.majorMinor cudatoolkit.version == "10.2" then "10.2" else "11.2"; in + fetchurl { + url = "${urlPrefix}/v${version}/cudnn-${v}-linux-x64-v8.1.1.33.tgz"; + hash = { + "10.2" = "sha256-Kkp7mabpv6aQ6xm7QeSVU/KnpJGls6v8rpAOFmxbbr0="; + "11.2" = "sha256-mKh4TpKGLyABjSDCgbMNSgzZUfk2lPZDPM9K6cUCumo="; + }."${v}"; + }; }; - cudnn_8_1_cudatoolkit_11_1 = cudnn_8_1_cudatoolkit_11_0.override { cudatoolkit = cudatoolkit_11_1; }; - cudnn_8_1_cudatoolkit_11_2 = cudnn_8_1_cudatoolkit_11_0.override { cudatoolkit = cudatoolkit_11_2; }; - cudnn_8_1_cudatoolkit_11 = cudnn_8_1_cudatoolkit_11_2; + cudnn_8_1_cudatoolkit_11_0 = cudnn_8_1_cudatoolkit_10_2.override { cudatoolkit = cudatoolkit_11_0; }; + cudnn_8_1_cudatoolkit_11_1 = cudnn_8_1_cudatoolkit_10_2.override { cudatoolkit = cudatoolkit_11_1; }; + cudnn_8_1_cudatoolkit_11_2 = cudnn_8_1_cudatoolkit_10_2.override { cudatoolkit = cudatoolkit_11_2; }; + + cudnn_8_1_cudatoolkit_10 = cudnn_8_1_cudatoolkit_10_2.override { cudatoolkit = cudatoolkit_10; }; + cudnn_8_1_cudatoolkit_11 = cudnn_8_1_cudatoolkit_10_2.override { cudatoolkit = cudatoolkit_11; }; # cuDNN 8.3 is necessary for the latest jaxlib, esp. jaxlib-bin. See # https://github.com/google/jax/discussions/9455 for more info. - cudnn_8_3_cudatoolkit_11_0 = generic rec { - # 8.3.0 is the last version to respect the folder structure that generic.nix - # expects. Later versions have files in a subdirectory `local_installers`. - # See eg https://developer.download.nvidia.com/compute/redist/cudnn/v8.3.1/. - version = "8.3.0"; - cudatoolkit = cudatoolkit_11_0; - # 8.3.0 is compatible with CUDA 11.0-11.5: - # https://docs.nvidia.com/deeplearning/cudnn/archives/cudnn-830/support-matrix/index.html - srcName = "cudnn-11.5-linux-x64-v8.3.0.98.tgz"; - hash = "sha256-RMb1rVyxL7dPoMmh58qvTwTXVa3xGi5bbJ5BfaN2srI="; - }; - cudnn_8_3_cudatoolkit_11_1 = cudnn_8_3_cudatoolkit_11_0.override { cudatoolkit = cudatoolkit_11_1; }; - cudnn_8_3_cudatoolkit_11_2 = cudnn_8_3_cudatoolkit_11_0.override { cudatoolkit = cudatoolkit_11_2; }; - cudnn_8_3_cudatoolkit_11_3 = cudnn_8_3_cudatoolkit_11_0.override { cudatoolkit = cudatoolkit_11_3; }; - cudnn_8_3_cudatoolkit_11_4 = cudnn_8_3_cudatoolkit_11_0.override { cudatoolkit = cudatoolkit_11_4; }; - cudnn_8_3_cudatoolkit_11_5 = cudnn_8_3_cudatoolkit_11_0.override { cudatoolkit = cudatoolkit_11_5; }; - cudnn_8_3_cudatoolkit_11 = cudnn_8_3_cudatoolkit_11_5; + cudnn_8_3_cudatoolkit_10_2 = + generic + rec { + version = "8.3.2"; + cudatoolkit = cudatoolkit_10_2; + # See https://docs.nvidia.com/deeplearning/cudnn/archives/cudnn-832/support-matrix/index.html#cudnn-cuda-hardware-versions. + minCudaVersion = "10.2.00000"; + maxCudaVersion = "11.5.99999"; + mkSrc = cudatoolkit: + let v = if lib.versions.majorMinor cudatoolkit.version == "10.2" then "10.2" else "11.5"; in + fetchurl { + # Starting at version 8.3.1 there's a new directory layout including + # a subdirectory `local_installers`. + url = "https://developer.download.nvidia.com/compute/redist/cudnn/v${version}/local_installers/${v}/cudnn-linux-x86_64-8.3.2.44_cuda${v}-archive.tar.xz"; + hash = { + "10.2" = "sha256-1vVu+cqM+PketzIQumw9ykm6REbBZhv6/lXB7EC2aaw="; + "11.5" = "sha256-VQCVPAjF5dHd3P2iNPnvvdzb5DpTsm3AqCxyP6FwxFc="; + }."${v}"; + }; + } + ; + cudnn_8_3_cudatoolkit_11_0 = cudnn_8_3_cudatoolkit_10_2.override { cudatoolkit = cudatoolkit_11_0; }; + cudnn_8_3_cudatoolkit_11_1 = cudnn_8_3_cudatoolkit_10_2.override { cudatoolkit = cudatoolkit_11_1; }; + cudnn_8_3_cudatoolkit_11_2 = cudnn_8_3_cudatoolkit_10_2.override { cudatoolkit = cudatoolkit_11_2; }; + cudnn_8_3_cudatoolkit_11_3 = cudnn_8_3_cudatoolkit_10_2.override { cudatoolkit = cudatoolkit_11_3; }; + cudnn_8_3_cudatoolkit_11_4 = cudnn_8_3_cudatoolkit_10_2.override { cudatoolkit = cudatoolkit_11_4; }; + cudnn_8_3_cudatoolkit_11_5 = cudnn_8_3_cudatoolkit_10_2.override { cudatoolkit = cudatoolkit_11_5; }; + + cudnn_8_3_cudatoolkit_10 = cudnn_8_3_cudatoolkit_10_2.override { cudatoolkit = cudatoolkit_10; }; + cudnn_8_3_cudatoolkit_11 = cudnn_8_3_cudatoolkit_10_2.override { cudatoolkit = cudatoolkit_11; }; } diff --git a/pkgs/development/libraries/science/math/cudnn/generic.nix b/pkgs/development/libraries/science/math/cudnn/generic.nix index 13fc0b67997..a5272e56ab6 100644 --- a/pkgs/development/libraries/science/math/cudnn/generic.nix +++ b/pkgs/development/libraries/science/math/cudnn/generic.nix @@ -1,11 +1,9 @@ -{ version -, srcName -, hash ? null -, sha256 ? null +{ minCudaVersion +, maxCudaVersion +, mkSrc +, version }: -assert (hash != null) || (sha256 != null); - { stdenv , lib , cudatoolkit @@ -25,19 +23,18 @@ stdenv.mkDerivation { name = "cudatoolkit-${cudatoolkit.majorVersion}-cudnn-${version}"; inherit version; - - src = let - hash_ = if hash != null then { inherit hash; } else { inherit sha256; }; - in fetchurl ({ - # URL from NVIDIA docker containers: https://gitlab.com/nvidia/cuda/blob/centos7/7.0/runtime/cudnn4/Dockerfile - url = "https://developer.download.nvidia.com/compute/redist/cudnn/v${version}/${srcName}"; - } // hash_); + # It's often the case that the src depends on the version of cudatoolkit it's + # being linked against, so we pass in `cudatoolkit` as an argument to `mkSrc`. + src = mkSrc cudatoolkit; nativeBuildInputs = [ addOpenGLRunpath ]; # Some cuDNN libraries depend on things in cudatoolkit, eg. # libcudnn_ops_infer.so.8 tries to load libcublas.so.11. So we need to patch # cudatoolkit into RPATH. See also https://github.com/NixOS/nixpkgs/blob/88a2ad974692a5c3638fcdc2c772e5770f3f7b21/pkgs/development/python-modules/jaxlib/bin.nix#L78-L98. + # + # Note also that version <=8.3.0 contained a subdirectory "lib64/" but in + # version 8.3.2 it seems to have been renamed to simply "lib/". installPhase = '' runHook preInstall @@ -46,14 +43,16 @@ stdenv.mkDerivation { patchelf --set-rpath "''${p:+$p:}${lib.makeLibraryPath [ stdenv.cc.cc cudatoolkit.lib ]}:${cudatoolkit}/lib:\$ORIGIN/" $1 } - for lib in lib64/lib*.so; do - fixRunPath $lib + for sofile in {lib,lib64}/lib*.so; do + fixRunPath $sofile done mkdir -p $out cp -a include $out/include - cp -a lib64 $out/lib64 + [ -d "lib/" ] && cp -a lib $out/lib + [ -d "lib64/" ] && cp -a lib64 $out/lib64 '' + lib.optionalString removeStatic '' + rm -f $out/lib/*.a rm -f $out/lib64/*.a '' + '' runHook postInstall @@ -77,10 +76,21 @@ stdenv.mkDerivation { }; meta = with lib; { + # Check that the cudatoolkit version satisfies our min/max constraints (both + # inclusive). We mark the package as broken if it fails to satisfies the + # official version constraints (as recorded in default.nix). In some cases + # you _may_ be able to smudge version constraints, just know that you're + # embarking into unknown and unsupported territory when doing so. + broken = let cudaVer = lib.getVersion cudatoolkit; in + !( + lib.versionAtLeast cudaVer minCudaVersion + && lib.versionAtLeast maxCudaVersion cudaVer + ); + description = "NVIDIA CUDA Deep Neural Network library (cuDNN)"; homepage = "https://developer.nvidia.com/cudnn"; license = licenses.unfree; platforms = [ "x86_64-linux" ]; - maintainers = with maintainers; [ mdaiter ]; + maintainers = with maintainers; [ mdaiter samuela ]; }; } diff --git a/pkgs/development/libraries/science/math/liblapack/default.nix b/pkgs/development/libraries/science/math/liblapack/default.nix index f2a50cb2d3d..9f481961e5b 100644 --- a/pkgs/development/libraries/science/math/liblapack/default.nix +++ b/pkgs/development/libraries/science/math/liblapack/default.nix @@ -5,6 +5,8 @@ , gfortran , cmake , shared ? true +# Compile with ILP64 interface +, blas64 ? false }: stdenv.mkDerivation rec { @@ -36,7 +38,19 @@ stdenv.mkDerivation rec { "-DLAPACKE=ON" "-DCBLAS=ON" "-DBUILD_TESTING=ON" - ] ++ lib.optional shared "-DBUILD_SHARED_LIBS=ON"; + ] ++ lib.optional shared "-DBUILD_SHARED_LIBS=ON" + ++ lib.optional blas64 "-DBUILD_INDEX64=ON"; + + passthru = { inherit blas64; }; + + postInstall = let + canonicalExtension = if stdenv.hostPlatform.isLinux + then "${stdenv.hostPlatform.extensions.sharedLibrary}.${lib.versions.major version}" + else stdenv.hostPlatform.extensions.sharedLibrary; + in lib.optionalString blas64 '' + ln -s $out/lib/liblapack64${canonicalExtension} $out/lib/liblapack${canonicalExtension} + ln -s $out/lib/liblapacke64${canonicalExtension} $out/lib/liblapacke${canonicalExtension} + ''; doCheck = true; @@ -63,7 +77,7 @@ stdenv.mkDerivation rec { meta = with lib; { description = "Linear Algebra PACKage"; homepage = "http://www.netlib.org/lapack/"; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ markuskowa ]; license = licenses.bsd3; platforms = platforms.all; }; diff --git a/pkgs/development/libraries/science/math/openblas/default.nix b/pkgs/development/libraries/science/math/openblas/default.nix index d61b6ee3acb..8e5d7180115 100644 --- a/pkgs/development/libraries/science/math/openblas/default.nix +++ b/pkgs/development/libraries/science/math/openblas/default.nix @@ -129,7 +129,7 @@ let in stdenv.mkDerivation rec { pname = "openblas"; - version = "0.3.19"; + version = "0.3.20"; outputs = [ "out" "dev" ]; @@ -137,7 +137,7 @@ stdenv.mkDerivation rec { owner = "xianyi"; repo = "OpenBLAS"; rev = "v${version}"; - sha256 = "sha256-EqA6oFM2theuvvuDOWeOx0Bv6AEFffmpWHJBzp23br0="; + sha256 = "sha256-FLPVcepf7tv/es+4kur9Op7o3iVAAayuYN4hY/P4mmQ="; }; inherit blas64; diff --git a/pkgs/development/libraries/science/math/suitesparse-graphblas/default.nix b/pkgs/development/libraries/science/math/suitesparse-graphblas/default.nix index bf5251d1aed..eea7c146ca3 100644 --- a/pkgs/development/libraries/science/math/suitesparse-graphblas/default.nix +++ b/pkgs/development/libraries/science/math/suitesparse-graphblas/default.nix @@ -6,7 +6,7 @@ stdenv.mkDerivation rec { pname = "suitesparse-graphblas"; - version = "6.2.2"; + version = "6.2.5"; outputs = [ "out" "dev" ]; @@ -14,7 +14,7 @@ stdenv.mkDerivation rec { owner = "DrTimothyAldenDavis"; repo = "GraphBLAS"; rev = "v${version}"; - sha256 = "sha256-uSPE7uFiG4xbsAeo/UmOP5Ns+3yZ7kKL2bNxzd8mzP8="; + sha256 = "sha256-N4yFlTxV+lVz70PSHPuWEEFLp0dpsImXYDLUYEo2JQI="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/speex/default.nix b/pkgs/development/libraries/speex/default.nix index a7d4aa97074..5509be7822d 100644 --- a/pkgs/development/libraries/speex/default.nix +++ b/pkgs/development/libraries/speex/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, autoreconfHook, pkg-config, fftw, speexdsp }: +{ lib, stdenv, fetchurl, fetchpatch, autoreconfHook, pkg-config, fftw, speexdsp }: stdenv.mkDerivation rec { pname = "speex"; @@ -13,6 +13,14 @@ stdenv.mkDerivation rec { sed -i '/AC_CONFIG_MACRO_DIR/i PKG_PROG_PKG_CONFIG' configure.ac ''; + patches = [ + (fetchpatch { + name = "CVE-2020-23903.patch"; + url = "https://github.com/xiph/speex/commit/870ff845b32f314aec0036641ffe18aba4916887.patch"; + sha256 = "sha256-uEMDhDTw/LIWNPPCXW6kF+udBmNO88G/jJTojAA9fs8="; + }) + ]; + outputs = [ "out" "dev" "doc" ]; nativeBuildInputs = [ autoreconfHook pkg-config ]; diff --git a/pkgs/development/libraries/tk/generic.nix b/pkgs/development/libraries/tk/generic.nix index 6aa67bf274d..fd4f3dea375 100644 --- a/pkgs/development/libraries/tk/generic.nix +++ b/pkgs/development/libraries/tk/generic.nix @@ -3,7 +3,8 @@ , ... }: tcl.mkTclDerivation { - name = "tk-${tcl.version}"; + pname = "tk"; + version = tcl.version; inherit src patches; diff --git a/pkgs/development/libraries/vte/default.nix b/pkgs/development/libraries/vte/default.nix index eae934a4ebb..aae30390ee4 100644 --- a/pkgs/development/libraries/vte/default.nix +++ b/pkgs/development/libraries/vte/default.nix @@ -22,6 +22,7 @@ , icu , systemd , systemdSupport ? stdenv.hostPlatform.isLinux +, nixosTests }: stdenv.mkDerivation rec { @@ -91,6 +92,9 @@ stdenv.mkDerivation rec { packageName = pname; versionPolicy = "odd-unstable"; }; + tests = { + inherit (nixosTests.terminal-emulators) gnome-terminal lxterminal mlterm roxterm sakura stupidterm terminator termite xfce4-terminal; + }; }; meta = with lib; { diff --git a/pkgs/development/libraries/wxwidgets/3.1/default.nix b/pkgs/development/libraries/wxwidgets/3.1/default.nix deleted file mode 100644 index cab0197c939..00000000000 --- a/pkgs/development/libraries/wxwidgets/3.1/default.nix +++ /dev/null @@ -1,138 +0,0 @@ -{ lib, stdenv -, fetchFromGitHub -, fetchurl -, pkg-config -, libXinerama -, libSM -, libXxf86vm -, libXtst -, gtk2 -, GConf ? null -, gtk3 -, xorgproto -, gst_all_1 -, setfile -, libGLSupported ? lib.elem stdenv.hostPlatform.system lib.platforms.mesaPlatforms -, withMesa ? libGLSupported -, libGLU ? null -, libGL ? null -, compat28 ? false -, compat30 ? true -, unicode ? true -, withGtk2 ? true -, withWebKit ? false -, webkitgtk ? null -, AGL ? null -, Carbon ? null -, Cocoa ? null -, Kernel ? null -, QTKit ? null -}: - -with lib; - -assert withMesa -> libGLU != null && libGL != null; -assert withWebKit -> webkitgtk != null; - -assert assertMsg (withGtk2 -> withWebKit == false) "wxGTK31: You cannot enable withWebKit when using withGtk2."; - -stdenv.mkDerivation rec { - version = "3.1.4"; - pname = "wxwidgets"; - - src = fetchFromGitHub { - owner = "wxWidgets"; - repo = "wxWidgets"; - rev = "v${version}"; - sha256 = "1fwzrk6w5k0vs8kqdq5lpzdbp5c09hx740wg6mi6vgmc1r67dv67"; - fetchSubmodules = true; - }; - - buildInputs = [ - libXinerama - libSM - libXxf86vm - libXtst - xorgproto - gst_all_1.gstreamer - gst_all_1.gst-plugins-base - ] ++ optionals withGtk2 [ gtk2 GConf ] - ++ optional (!withGtk2) gtk3 - ++ optional withMesa libGLU - ++ optional withWebKit webkitgtk - ++ optionals stdenv.isDarwin [ setfile Carbon Cocoa Kernel QTKit ]; - - nativeBuildInputs = [ pkg-config ]; - - propagatedBuildInputs = optional stdenv.isDarwin AGL; - - patches = [ - (fetchurl { - # https://trac.wxwidgets.org/ticket/17942 - url = "https://trac.wxwidgets.org/raw-attachment/ticket/17942/" - + "fix_assertion_using_hide_in_destroy.diff"; - sha256 = "009y3dav79wiig789vkkc07g1qdqprg1544lih79199kb1h64lvy"; - }) - ]; - - configureFlags = - [ - "--disable-precomp-headers" - "--enable-mediactrl" - (if compat28 then "--enable-compat28" else "--disable-compat28") - (if compat30 then "--enable-compat30" else "--disable-compat30") - ] - ++ optional unicode "--enable-unicode" - ++ optional withMesa "--with-opengl" - ++ optionals stdenv.isDarwin - # allow building on 64-bit - [ "--with-cocoa" "--enable-universal-binaries" "--with-macosx-version-min=10.7" ] - ++ optionals withWebKit - [ "--enable-webview" "--enable-webviewwebkit" ]; - - SEARCH_LIB = "${libGLU.out}/lib ${libGL.out}/lib "; - - preConfigure = " - substituteInPlace configure --replace 'SEARCH_INCLUDE=' 'DUMMY_SEARCH_INCLUDE=' - substituteInPlace configure --replace 'SEARCH_LIB=' 'DUMMY_SEARCH_LIB=' - substituteInPlace configure --replace /usr /no-such-path - " + optionalString stdenv.isDarwin '' - substituteInPlace configure --replace \ - 'ac_cv_prog_SETFILE="/Developer/Tools/SetFile"' \ - 'ac_cv_prog_SETFILE="${setfile}/bin/SetFile"' - substituteInPlace configure --replace \ - "-framework System" \ - -lSystem - ''; - - postInstall = " - (cd $out/include && ln -s wx-*/* .) - "; - - passthru = { - inherit compat28 compat30 unicode; - gtk = if withGtk2 then gtk2 else gtk3; - }; - - enableParallelBuilding = true; - - meta = { - platforms = with platforms; darwin ++ linux; - license = licenses.wxWindows; - homepage = "https://www.wxwidgets.org/"; - description = "A C++ library that lets developers create applications for Windows, macOS, Linux and other platforms with a single code base"; - longDescription = '' - WxWidgets gives you a single, easy-to-use API for - writing GUI applications on multiple platforms that still utilize the - native platform's controls and utilities. Link with the appropriate library - for your platform and compiler, and your application will adopt the look - and feel appropriate to that platform. On top of great GUI functionality, - wxWidgets gives you: online help, network programming, streams, clipboard - and drag and drop, multithreading, image loading and saving in a variety of - popular formats, database support, HTML viewing and printing, and much - more. - ''; - badPlatforms = [ "x86_64-darwin" ]; - maintainers = with maintainers; [ tfmoraes ]; - }; -} diff --git a/pkgs/development/libraries/wxwidgets/2.8/default.nix b/pkgs/development/libraries/wxwidgets/wxGTK28.nix index 19a57d68e15..19a57d68e15 100644 --- a/pkgs/development/libraries/wxwidgets/2.8/default.nix +++ b/pkgs/development/libraries/wxwidgets/wxGTK28.nix diff --git a/pkgs/development/libraries/wxwidgets/2.9/default.nix b/pkgs/development/libraries/wxwidgets/wxGTK29.nix index 34d76e53ff6..d5bef77202f 100644 --- a/pkgs/development/libraries/wxwidgets/2.9/default.nix +++ b/pkgs/development/libraries/wxwidgets/wxGTK29.nix @@ -36,7 +36,7 @@ stdenv.mkDerivation rec { patches = [ # https://github.com/wxWidgets/wxWidgets/issues/17942 - ../patches/0001-fix-assertion-using-hide-in-destroy.patch + ./patches/0001-fix-assertion-using-hide-in-destroy.patch ]; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/wxwidgets/3.0/default.nix b/pkgs/development/libraries/wxwidgets/wxGTK30.nix index 628d8bd0237..11545330387 100644 --- a/pkgs/development/libraries/wxwidgets/3.0/default.nix +++ b/pkgs/development/libraries/wxwidgets/wxGTK30.nix @@ -12,8 +12,8 @@ , pkg-config , xorgproto , withMesa ? lib.elem stdenv.hostPlatform.system lib.platforms.mesaPlatforms -, compat24 ? false -, compat26 ? true +, compat26 ? false +, compat28 ? true , unicode ? true , withGtk2 ? true , withWebKit ? false, webkitgtk @@ -69,14 +69,14 @@ stdenv.mkDerivation rec { patches = [ # https://github.com/wxWidgets/wxWidgets/issues/17942 - ../patches/0001-fix-assertion-using-hide-in-destroy.patch + ./patches/0001-fix-assertion-using-hide-in-destroy.patch ]; configureFlags = [ "--disable-precomp-headers" "--enable-mediactrl" - (if compat24 then "--enable-compat24" else "--disable-compat24") (if compat26 then "--enable-compat26" else "--disable-compat26") + (if compat28 then "--enable-compat28" else "--disable-compat28") ] ++ lib.optional unicode "--enable-unicode" ++ lib.optional withMesa "--with-opengl" @@ -136,6 +136,6 @@ stdenv.mkDerivation rec { passthru = { inherit gtk; - inherit compat24 compat26 unicode; + inherit compat26 compat28 unicode; }; } diff --git a/pkgs/development/libraries/wxwidgets/wxGTK31.nix b/pkgs/development/libraries/wxwidgets/wxGTK31.nix new file mode 100644 index 00000000000..c262232f30d --- /dev/null +++ b/pkgs/development/libraries/wxwidgets/wxGTK31.nix @@ -0,0 +1,149 @@ +{ lib +, stdenv +, fetchFromGitHub +, fetchurl +, gnome2 +, gst_all_1 +, gtk2 +, gtk3 +, libGL +, libGLU +, libSM +, libXinerama +, libXtst +, libXxf86vm +, pkg-config +, xorgproto +, compat28 ? false +, compat30 ? true +, unicode ? true +, withGtk2 ? true +, withMesa ? lib.elem stdenv.hostPlatform.system lib.platforms.mesaPlatforms +, withWebKit ? false, webkitgtk +, darwin +}: + +assert withMesa -> libGLU != null && libGL != null; +assert withWebKit -> webkitgtk != null; + +assert withGtk2 -> (!withWebKit); + +let + inherit (darwin.stubs) setfile; + inherit (darwin.apple_sdk.frameworks) AGL Carbon Cocoa Kernel QTKit; + inherit (gnome2) GConf; + inherit (gst_all_1) gst-plugins-base gstreamer; + gtk = if withGtk2 then gtk2 else gtk3; +in +stdenv.mkDerivation rec { + pname = "wxwidgets"; + version = "3.1.5"; + + src = fetchFromGitHub { + owner = "wxWidgets"; + repo = "wxWidgets"; + rev = "v${version}"; + hash = "sha256-2zMvcva0GUDmSYK0Wk3/2Y6R3F7MgdqGBrOhmWgVA6g="; + fetchSubmodules = true; + }; + + patches = [ + # https://github.com/wxWidgets/wxWidgets/issues/17942 + ./patches/0001-fix-assertion-using-hide-in-destroy.patch + ]; + + nativeBuildInputs = [ pkg-config ]; + + buildInputs = [ + gst-plugins-base + gstreamer + gtk + libSM + libXinerama + libXtst + libXxf86vm + xorgproto + ] + ++ lib.optionals withGtk2 [ + GConf + ] + ++ lib.optional withMesa libGLU + ++ lib.optional withWebKit webkitgtk + ++ lib.optionals stdenv.isDarwin [ + Carbon + Cocoa + Kernel + QTKit + setfile + ]; + + propagatedBuildInputs = lib.optional stdenv.isDarwin AGL; + + configureFlags = [ + "--disable-precomp-headers" + "--enable-mediactrl" + (if compat28 then "--enable-compat28" else "--disable-compat28") + (if compat30 then "--enable-compat30" else "--disable-compat30") + ] + ++ lib.optional unicode "--enable-unicode" + ++ lib.optional withMesa "--with-opengl" + ++ lib.optionals stdenv.isDarwin [ + # allow building on 64-bit + "--enable-universal-binaries" + "--with-cocoa" + "--with-macosx-version-min=10.7" + ] + ++ lib.optionals withWebKit [ + "--enable-webview" + "--enable-webviewwebkit" + ]; + + SEARCH_LIB = "${libGLU.out}/lib ${libGL.out}/lib "; + + preConfigure = '' + substituteInPlace configure --replace \ + 'SEARCH_INCLUDE=' 'DUMMY_SEARCH_INCLUDE=' + substituteInPlace configure --replace \ + 'SEARCH_LIB=' 'DUMMY_SEARCH_LIB=' + substituteInPlace configure --replace \ + /usr /no-such-path + '' + lib.optionalString stdenv.isDarwin '' + substituteInPlace configure --replace \ + 'ac_cv_prog_SETFILE="/Developer/Tools/SetFile"' \ + 'ac_cv_prog_SETFILE="${setfile}/bin/SetFile"' + substituteInPlace configure --replace \ + "-framework System" "-lSystem" + ''; + + postInstall = " + pushd $out/include + ln -s wx-*/* . + popd + "; + + enableParallelBuilding = true; + + meta = with lib; { + homepage = "https://www.wxwidgets.org/"; + description = "A Cross-Platform C++ GUI Library"; + longDescription = '' + wxWidgets gives you a single, easy-to-use API for writing GUI applications + on multiple platforms that still utilize the native platform's controls + and utilities. Link with the appropriate library for your platform and + compiler, and your application will adopt the look and feel appropriate to + that platform. On top of great GUI functionality, wxWidgets gives you: + online help, network programming, streams, clipboard and drag and drop, + multithreading, image loading and saving in a variety of popular formats, + database support, HTML viewing and printing, and much more. + ''; + license = licenses.wxWindows; + maintainers = with maintainers; [ AndersonTorres tfmoraes ]; + platforms = platforms.unix; + badPlatforms = platforms.darwin; # ofBorg is failing, don't know if internal + }; + + passthru = { + inherit gtk; + inherit compat28 compat30 unicode; + }; +} diff --git a/pkgs/development/libraries/wxwidgets/3.0/mac.nix b/pkgs/development/libraries/wxwidgets/wxmac30.nix index e1f732929ce..e1f732929ce 100644 --- a/pkgs/development/libraries/wxwidgets/3.0/mac.nix +++ b/pkgs/development/libraries/wxwidgets/wxmac30.nix diff --git a/pkgs/development/libraries/xdg-dbus-proxy/default.nix b/pkgs/development/libraries/xdg-dbus-proxy/default.nix index 21d6b6fa73e..95373934a47 100644 --- a/pkgs/development/libraries/xdg-dbus-proxy/default.nix +++ b/pkgs/development/libraries/xdg-dbus-proxy/default.nix @@ -10,11 +10,11 @@ stdenv.mkDerivation rec { pname = "xdg-dbus-proxy"; - version = "0.1.2"; + version = "0.1.3"; src = fetchurl { url = "https://github.com/flatpak/xdg-dbus-proxy/releases/download/${version}/${pname}-${version}.tar.xz"; - sha256 = "03sj1h0c2l08xa8phw013fnxr4fgav7l2mkjhzf9xk3dykwxcj8p"; + sha256 = "sha256-A7XSjKh5JT3bvOMQmJCb7MoUleqBGmN3pJLijxbAm5s="; }; nativeBuildInputs = [ diff --git a/pkgs/development/libraries/yder/default.nix b/pkgs/development/libraries/yder/default.nix index 49544a37468..9dd55482300 100644 --- a/pkgs/development/libraries/yder/default.nix +++ b/pkgs/development/libraries/yder/default.nix @@ -11,13 +11,13 @@ stdenv.mkDerivation rec { pname = "yder"; - version = "1.4.14"; + version = "1.4.15"; src = fetchFromGitHub { owner = "babelouest"; repo = pname; rev = "v${version}"; - sha256 = "sha256-4FSUBFqrxTbqg2EKYuXv4gUeE40ViNZRk5gHv+C2p9o="; + sha256 = "sha256-hPAL1UngodNbQCCdKulaF5faI0JOjmWdz3q8oyPH7C4="; }; patches = [ diff --git a/pkgs/development/node-packages/default.nix b/pkgs/development/node-packages/default.nix index c950ce9e5e9..b308f6128c2 100644 --- a/pkgs/development/node-packages/default.nix +++ b/pkgs/development/node-packages/default.nix @@ -359,7 +359,7 @@ let src = fetchurl { url = "https://registry.npmjs.org/prisma/-/prisma-${version}.tgz"; - sha512 = "sha512-dAld12vtwdz9Rz01nOjmnXe+vHana5PSog8t0XGgLemKsUVsaupYpr74AHaS3s78SaTS5s2HOghnJF+jn91ZrA=="; + sha512 = "sha512-8SdsLPhKR3mOfoo2o73h9mNn3v5kA/RqGA26Sv6qDS78Eh2uepPqt5e8/nwj5EOblYm5HEGuitaXQrOCLb6uTw=="; }; postInstall = with pkgs; '' wrapProgram "$out/bin/prisma" \ diff --git a/pkgs/development/php-packages/composer/default.nix b/pkgs/development/php-packages/composer/default.nix index 4c94b742125..96cc0b9706b 100644 --- a/pkgs/development/php-packages/composer/default.nix +++ b/pkgs/development/php-packages/composer/default.nix @@ -1,14 +1,14 @@ { mkDerivation, fetchurl, makeWrapper, unzip, lib, php }: let pname = "composer"; - version = "2.2.7"; + version = "2.2.9"; in mkDerivation { inherit pname version; src = fetchurl { url = "https://getcomposer.org/download/${version}/composer.phar"; - sha256 = "sha256-EAQN7WY1QZkO74zh9vpEyztKR+FF77jp5ZkHoVBoAz0="; + sha256 = "sha256-SPn9ya2TkE/ullULRa4DpR9pcYUC7oVdqJS0rXHS3+A="; }; dontUnpack = true; diff --git a/pkgs/development/php-packages/phpstan/default.nix b/pkgs/development/php-packages/phpstan/default.nix index 6351a076fde..af889e10fa7 100644 --- a/pkgs/development/php-packages/phpstan/default.nix +++ b/pkgs/development/php-packages/phpstan/default.nix @@ -1,14 +1,14 @@ { mkDerivation, fetchurl, makeWrapper, lib, php }: let pname = "phpstan"; - version = "1.4.9"; + version = "1.4.10"; in mkDerivation { inherit pname version; src = fetchurl { url = "https://github.com/phpstan/phpstan/releases/download/${version}/phpstan.phar"; - sha256 = "sha256-N2oYhhcU6uCGUzJbL8/vMUlypJa/Z86d4Xddvj6k1fc="; + sha256 = "sha256-KFGxvk95Zx1bONyDkZsJP7VRzrInSfN2R5Nk3waYz1w="; }; dontUnpack = true; diff --git a/pkgs/development/php-packages/swoole/default.nix b/pkgs/development/php-packages/swoole/default.nix index 3cbd55221e1..201b78e4966 100644 --- a/pkgs/development/php-packages/swoole/default.nix +++ b/pkgs/development/php-packages/swoole/default.nix @@ -3,8 +3,8 @@ buildPecl { pname = "swoole"; - version = "4.8.7"; - sha256 = "sha256-yoiMuIbIgwkuvoeIJT1gC8UsOE504nEQ+XsE7Oprb9o="; + version = "4.8.8"; + sha256 = "sha256-SnhDRC7/a7BTHn87c6YCz/R8jI6aES1ibSD6YAl6R+I="; buildInputs = [ pcre2 ] ++ lib.optionals (!stdenv.isDarwin) [ valgrind ]; internalDeps = lib.optionals (lib.versionOlder php.version "7.4") [ php.extensions.hash ]; diff --git a/pkgs/development/python-modules/adafruit-platformdetect/default.nix b/pkgs/development/python-modules/adafruit-platformdetect/default.nix index 9ed55214b4c..2671c25e59f 100644 --- a/pkgs/development/python-modules/adafruit-platformdetect/default.nix +++ b/pkgs/development/python-modules/adafruit-platformdetect/default.nix @@ -6,13 +6,13 @@ buildPythonPackage rec { pname = "adafruit-platformdetect"; - version = "3.21.0"; + version = "3.22.0"; format = "setuptools"; src = fetchPypi { pname = "Adafruit-PlatformDetect"; inherit version; - sha256 = "sha256-H65Ar/+9AwhKFNRK/SZyU8XzrMt3myjBo+YNJYtQ0b4="; + sha256 = "sha256-XnB6aSTKRV72WjcXx9jPZ+FGmCNh6dvwiau7WDlyE5M="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/adb-enhanced/default.nix b/pkgs/development/python-modules/adb-enhanced/default.nix index c38851160c2..bf3f124b02e 100644 --- a/pkgs/development/python-modules/adb-enhanced/default.nix +++ b/pkgs/development/python-modules/adb-enhanced/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "adb-enhanced"; - version = "2.5.12"; + version = "2.5.14"; disabled = pythonOlder "3.4"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "ashishb"; repo = pname; rev = version; - sha256 = "sha256-OZSLk5qXX6rEclo6JC8o/7Mz0Y2sJqUsLhnrVK4gkVI="; + sha256 = "sha256-GaPOYBQEGI40MutjjY8exABqGge2p/buk9v+NcZ5oJs="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/ailment/default.nix b/pkgs/development/python-modules/ailment/default.nix index 94c47ab62a0..ef606a027d0 100644 --- a/pkgs/development/python-modules/ailment/default.nix +++ b/pkgs/development/python-modules/ailment/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "ailment"; - version = "9.1.11752"; + version = "9.1.12332"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "v${version}"; - hash = "sha256-UbcPxYEyuX8W0uZXeCu00yBshdcPBAQKzZqhAYXTf+8="; + hash = "sha256-qWKvNhiOAonUi0qpOWtwbNZa2lgBQ+gaGrAHMgDdr4Q="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/aioairzone/default.nix b/pkgs/development/python-modules/aioairzone/default.nix new file mode 100644 index 00000000000..5a51661b8e1 --- /dev/null +++ b/pkgs/development/python-modules/aioairzone/default.nix @@ -0,0 +1,40 @@ +{ lib +, aiohttp +, buildPythonPackage +, fetchFromGitHub +, pythonOlder +}: + +buildPythonPackage rec { + pname = "aioairzone"; + version = "0.1.0"; + format = "setuptools"; + + disabled = pythonOlder "3.8"; + + src = fetchFromGitHub { + owner = "Noltari"; + repo = pname; + rev = version; + hash = "sha256-QruXxC/+61P2Mi0UILUIKp4S3wS1+E+WmzBbiUqlVe4="; + }; + + propagatedBuildInputs = [ + aiohttp + ]; + + # Module has no tests + doCheck = false; + + pythonImportsCheck = [ + "aioairzone" + ]; + + meta = with lib; { + description = "Module to control AirZone devices"; + homepage = "https://github.com/Noltari/aioairzone"; + license = with licenses; [ asl20 ]; + maintainers = with maintainers; [ fab ]; + }; +} + diff --git a/pkgs/development/python-modules/aiobotocore/default.nix b/pkgs/development/python-modules/aiobotocore/default.nix index ef39f451d59..01066c127be 100644 --- a/pkgs/development/python-modules/aiobotocore/default.nix +++ b/pkgs/development/python-modules/aiobotocore/default.nix @@ -10,12 +10,12 @@ buildPythonPackage rec { pname = "aiobotocore"; - version = "2.1.1"; + version = "2.1.2"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-2+mrmXhRwkWLB6hfaCvizPNdZ51d4Pj1cSKfdArXunE="; + sha256 = "sha256-AP1/Q8wEhNjtJ0/QvkkqoWp/6medvqlqYCu3IspMLSI="; }; # relax version constraints: aiobotocore works with newer botocore versions diff --git a/pkgs/development/python-modules/aiohttp/default.nix b/pkgs/development/python-modules/aiohttp/default.nix index f96fa882038..f6d9b5d97ec 100644 --- a/pkgs/development/python-modules/aiohttp/default.nix +++ b/pkgs/development/python-modules/aiohttp/default.nix @@ -92,7 +92,10 @@ buildPythonPackage rec { # Probably because we run `python -m pytest` instead of `pytest` in the hook. preCheck = '' cd tests - ''; + '' + lib.optionalString stdenv.isDarwin '' + # Work around "OSError: AF_UNIX path too long" + export TMPDIR="/tmp" + ''; meta = with lib; { description = "Asynchronous HTTP Client/Server for Python and asyncio"; diff --git a/pkgs/development/python-modules/aiosignal/default.nix b/pkgs/development/python-modules/aiosignal/default.nix index 1fd619a846a..9d815dfac05 100644 --- a/pkgs/development/python-modules/aiosignal/default.nix +++ b/pkgs/development/python-modules/aiosignal/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "aiosignal"; - version = "1.2.0"; # re-enable tests after 1.2.0 + version = "1.2.0"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { @@ -23,8 +23,6 @@ buildPythonPackage rec { frozenlist ]; - # not compatible w ith latest asyncio - doCheck = false; checkInputs = [ pytest-asyncio pytestCheckHook @@ -32,6 +30,7 @@ buildPythonPackage rec { postPatch = '' substituteInPlace pytest.ini \ + --replace "filterwarnings = error" "" \ --replace "--cov=aiosignal" "" ''; diff --git a/pkgs/development/python-modules/androidtv/default.nix b/pkgs/development/python-modules/androidtv/default.nix index d09daa273b8..80f726bdc18 100644 --- a/pkgs/development/python-modules/androidtv/default.nix +++ b/pkgs/development/python-modules/androidtv/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "androidtv"; - version = "0.0.64"; + version = "0.0.65"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "JeffLIrion"; repo = "python-androidtv"; rev = "v${version}"; - hash = "sha256-CJJ+mWAX9XG1/E2PljUZ8oz/la3hYXF1tMfuKt0Zvjw="; + hash = "sha256-bhXmPplRT9gzeD/GdD2HxN+Z4vvaiaxBwkqSml9SJUs="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/angr/default.nix b/pkgs/development/python-modules/angr/default.nix index 93a4b22f5dd..1881da62f50 100644 --- a/pkgs/development/python-modules/angr/default.nix +++ b/pkgs/development/python-modules/angr/default.nix @@ -46,7 +46,7 @@ in buildPythonPackage rec { pname = "angr"; - version = "9.1.11752"; + version = "9.1.12332"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -55,7 +55,7 @@ buildPythonPackage rec { owner = pname; repo = pname; rev = "v${version}"; - hash = "sha256-4DUM1c3M/naJFqN/gdrX/NnJrY3ElUEOQ34cwcpSC+s="; + hash = "sha256-GaW1XyFOnjU28HqptFC6+Fe41zYZMR716Nsq0dPy660="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/angrop/default.nix b/pkgs/development/python-modules/angrop/default.nix index 21eeeb2369d..8164190cd49 100644 --- a/pkgs/development/python-modules/angrop/default.nix +++ b/pkgs/development/python-modules/angrop/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "angrop"; - version = "9.1.11752"; + version = "9.1.12332"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "v${version}"; - hash = "sha256-nZGAuWp07VMpOvqw38FGSiUhaFjJOfCzOaam4Ex7qbY="; + hash = "sha256-lhwlZ7eHaEMaTW7c+WCRSeGSIQ5IeEx6XALyYJH+Ey0="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/ansible/base.nix b/pkgs/development/python-modules/ansible/base.nix index a7ab23a3666..173e620703a 100644 --- a/pkgs/development/python-modules/ansible/base.nix +++ b/pkgs/development/python-modules/ansible/base.nix @@ -28,11 +28,11 @@ let in buildPythonPackage rec { pname = "ansible-base"; - version = "2.10.16"; + version = "2.10.17"; src = fetchPypi { inherit pname version; - sha256 = "sha256-2XQhTtA6wSnCmZZ6pMmCBZQ7o28gBA5/63JI4MPi6hU="; + sha256 = "sha256-75JYgsqNTDwszQkc3hmeDIaQJMytDQejN9zyB7/zLzQ="; }; # ansible_connection is already wrapped, so don't pass it through diff --git a/pkgs/development/python-modules/ansible/core.nix b/pkgs/development/python-modules/ansible/core.nix index 6b54bd275ba..fc242ccd10a 100644 --- a/pkgs/development/python-modules/ansible/core.nix +++ b/pkgs/development/python-modules/ansible/core.nix @@ -23,17 +23,17 @@ let ansible-collections = callPackage ./collections.nix { - version = "5.2.0"; - sha256 = "sha256:1jwraha3s15s692d47kgcr7jy1ngbg6ipmkb0ak7fjnb57r4im66"; + version = "5.5.0"; + sha256 = "sha256-uKdtc3iJyb/Q5rDyJ23PjYNtpmcGejVXdvNQTXpm1Rg="; }; in buildPythonPackage rec { pname = "ansible-core"; - version = "2.12.2"; + version = "2.12.3"; src = fetchPypi { inherit pname version; - sha256 = "sha256:1hz7j8gsgxbfjdf9562cbyxia3c4crdv50fm0p0wp4js79rf2ydw"; + sha256 = "sha256-ihNan3TJfKtndZKTdErTQ1D3GVI+i9m7kAjfTPlTryA="; }; # ansible_connection is already wrapped, so don't pass it through diff --git a/pkgs/development/python-modules/apycula/default.nix b/pkgs/development/python-modules/apycula/default.nix index d8a369d6da0..e84e3eb301b 100644 --- a/pkgs/development/python-modules/apycula/default.nix +++ b/pkgs/development/python-modules/apycula/default.nix @@ -12,17 +12,20 @@ buildPythonPackage rec { pname = "apycula"; - version = "0.2a2"; + version = "0.2"; + format = "setuptools"; disabled = pythonOlder "3.8"; src = fetchPypi { inherit version; pname = "Apycula"; - hash = "sha256-pcVoYGBhp9jyuWBJ/Rpi8cjwDgPjhJ1PrPblj5DQTpk="; + hash = "sha256-xvr/NDAjCjhpImzNlCOcI4x5dIAefJ1TnUgoBhgdhPA="; }; - nativeBuildInputs = [ setuptools-scm ]; + nativeBuildInputs = [ + setuptools-scm + ]; propagatedBuildInputs = [ numpy @@ -35,7 +38,9 @@ buildPythonPackage rec { # tests require a physical FPGA doCheck = false; - pythonImportsCheck = [ "apycula" ]; + pythonImportsCheck = [ + "apycula" + ]; meta = with lib; { description = "Open Source tools for Gowin FPGAs"; diff --git a/pkgs/development/python-modules/archinfo/default.nix b/pkgs/development/python-modules/archinfo/default.nix index add8e72d8e7..f9affcddd12 100644 --- a/pkgs/development/python-modules/archinfo/default.nix +++ b/pkgs/development/python-modules/archinfo/default.nix @@ -1,6 +1,7 @@ { lib , buildPythonPackage , fetchFromGitHub +, fetchpatch , pytestCheckHook , nose , pythonOlder @@ -8,7 +9,7 @@ buildPythonPackage rec { pname = "archinfo"; - version = "9.1.11752"; + version = "9.1.12332"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -17,7 +18,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "v${version}"; - hash = "sha256-D1YssHa14q2jxn4HtOYZlTdwGPkiiMhWuOh08fj87ic="; + hash = "sha256-nv/hwQZgKv/cM8fF6GqI8zY9GAe8aCZ/AGFOmhz+bMM="; }; checkInputs = [ @@ -25,6 +26,15 @@ buildPythonPackage rec { pytestCheckHook ]; + patches = [ + # Make archinfo import without installing pyvex, https://github.com/angr/archinfo/pull/113 + (fetchpatch { + name = "fix-import-issue.patch"; + url = "https://github.com/angr/archinfo/commit/d29c108f55ffd458ff1d3d65db2d651c76b19267.patch"; + sha256 = "sha256-9vi0QyqQLIPQxFuB8qrpcnPXWOJ6d27/IXJE/Ui6HhM="; + }) + ]; + pythonImportsCheck = [ "archinfo" ]; diff --git a/pkgs/development/python-modules/argon2_cffi/default.nix b/pkgs/development/python-modules/argon2_cffi/default.nix index 839429bc948..4ecf5fbc5f0 100644 --- a/pkgs/development/python-modules/argon2_cffi/default.nix +++ b/pkgs/development/python-modules/argon2_cffi/default.nix @@ -23,7 +23,8 @@ buildPythonPackage rec { sha256 = "d384164d944190a7dd7ef22c6aa3ff197da12962bd04b17f64d4e93d934dba5b"; }; - propagatedBuildInputs = [ cffi six ] ++ lib.optional (!isPy3k) enum34; + propagatedBuildInputs = [ cffi six argon2-cffi-bindings ] + ++ lib.optional (!isPy3k) enum34; propagatedNativeBuildInputs = [ argon2-cffi-bindings diff --git a/pkgs/development/python-modules/async_generator/default.nix b/pkgs/development/python-modules/async_generator/default.nix index fb7dec6d6ed..6f6da10a87f 100644 --- a/pkgs/development/python-modules/async_generator/default.nix +++ b/pkgs/development/python-modules/async_generator/default.nix @@ -1,4 +1,10 @@ -{ lib, buildPythonPackage, fetchPypi, pythonOlder, isPy35, pytest, pytest-asyncio }: +{ lib +, buildPythonPackage +, fetchPypi +, pythonOlder +, pytest-asyncio +, pytestCheckHook +}: buildPythonPackage rec { pname = "async-generator"; @@ -12,17 +18,17 @@ buildPythonPackage rec { sha256 = "6ebb3d106c12920aaae42ccb6f787ef5eefdcdd166ea3d628fa8476abe712144"; }; - # no longer compatible with pytest-asyncio - doCheck = false; - checkInputs = [ pytest pytest-asyncio ]; + checkInputs = [ + pytest-asyncio + pytestCheckHook + ]; - checkPhase = '' - pytest -W error -ra -v --pyargs async_generator - ''; + pythonImportsCheck = [ "async_generator" ]; meta = with lib; { description = "Async generators and context managers for Python 3.5+"; homepage = "https://github.com/python-trio/async_generator"; license = with licenses; [ mit asl20 ]; + maintainers = with maintainers; [ dotlambda ]; }; } diff --git a/pkgs/development/python-modules/aws-lambda-builders/default.nix b/pkgs/development/python-modules/aws-lambda-builders/default.nix index db168c9b325..0aac1e71e7c 100644 --- a/pkgs/development/python-modules/aws-lambda-builders/default.nix +++ b/pkgs/development/python-modules/aws-lambda-builders/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "aws-lambda-builders"; - version = "1.13.0"; + version = "1.14.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "awslabs"; repo = "aws-lambda-builders"; rev = "v${version}"; - sha256 = "sha256-t04g65TPeOYgEQw6kPJrlJN1ssQrsN9kl7g69J4pPwo="; + sha256 = "sha256-ypzo0cYvP8LV74cQMzHIFDk3LH0bbEB4UxPxRuqe2fc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/awscrt/default.nix b/pkgs/development/python-modules/awscrt/default.nix index 6bc4c63aefb..fa00971ff25 100644 --- a/pkgs/development/python-modules/awscrt/default.nix +++ b/pkgs/development/python-modules/awscrt/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "awscrt"; - version = "0.13.3"; + version = "0.13.5"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-1GaKDpOGX/YbM4rByTw0nYgwHYFvOLHZ0GRvanX3vAU="; + hash = "sha256-dUNljMKsbl6eByhEYivWgRJczTBw3N1RVl8r3e898mg="; }; buildInputs = lib.optionals stdenv.isDarwin [ diff --git a/pkgs/development/python-modules/azure-containerregistry/default.nix b/pkgs/development/python-modules/azure-containerregistry/default.nix new file mode 100644 index 00000000000..bc1aaf5f8bd --- /dev/null +++ b/pkgs/development/python-modules/azure-containerregistry/default.nix @@ -0,0 +1,32 @@ +{ lib, buildPythonPackage, fetchPypi, pythonOlder +, azure-core +, msrest +, msrestazure +}: + +buildPythonPackage rec { + pname = "azure-containerregistry"; + version = "1.0.0"; + disabled = pythonOlder "3.6"; + + src = fetchPypi { + inherit pname version; + sha256 = "sha256-DIZCHZM5aeKtmJrgwAk5J26ltaxNxKUn3rR+FbmuyZc="; + extension = "zip"; + }; + + propagatedBuildInputs = [ azure-core msrest msrestazure ]; + + # tests require azure-devtools which are not published (since 2020) + # https://github.com/Azure/azure-sdk-for-python/blob/main/sdk/containerregistry/azure-containerregistry/dev_requirements.txt + doCheck = false; + + pythonImportsCheck = [ "azure.core" "azure.containerregistry" ]; + + meta = with lib; { + description = "Microsoft Azure Container Registry client library for Python"; + homepage = "https://github.com/Azure/azure-sdk-for-python/tree/main/sdk/containerregistry/azure-containerregistry"; + license = licenses.mit; + maintainers = with maintainers; [ peterromfeldhk ]; + }; +} diff --git a/pkgs/development/python-modules/azure-core/default.nix b/pkgs/development/python-modules/azure-core/default.nix index 9a128d81348..b7d330e6eff 100644 --- a/pkgs/development/python-modules/azure-core/default.nix +++ b/pkgs/development/python-modules/azure-core/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi, isPy27 +{ lib, stdenv, buildPythonPackage, fetchPypi, isPy27 , aiodns , aiohttp , flask @@ -51,7 +51,18 @@ buildPythonPackage rec { pytestFlagsArray = [ "tests/" ]; # disable tests which touch network - disabledTests = [ "aiohttp" "multipart_send" "response" "request" "timeout" ]; + disabledTests = [ + "aiohttp" + "multipart_send" + "response" + "request" + "timeout" + # disable 8 tests failing on some darwin machines with errors: + # azure.core.polling.base_polling.BadStatus: Invalid return status 403 for 'GET' operation + # azure.core.exceptions.HttpResponseError: Operation returned an invalid status 'Forbidden' + ] ++ lib.optional stdenv.isDarwin [ + "location_polling_fail" + ]; disabledTestPaths = [ # requires testing modules which aren't published, and likely to create cyclic dependencies "tests/test_connection_string_parsing.py" diff --git a/pkgs/development/python-modules/azure-mgmt-monitor/default.nix b/pkgs/development/python-modules/azure-mgmt-monitor/default.nix index fae47547cc7..66818ce5b05 100644 --- a/pkgs/development/python-modules/azure-mgmt-monitor/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-monitor/default.nix @@ -1,22 +1,24 @@ { lib , buildPythonPackage , fetchPypi -, isPy3k +, pythonOlder , msrest , msrestazure , azure-common , azure-mgmt-core -, azure-mgmt-nspkg }: buildPythonPackage rec { pname = "azure-mgmt-monitor"; - version = "3.0.0"; + version = "3.1.0"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; extension = "zip"; - sha256 = "91ddb7333bf2b9541a53864cc8d2501e3694a03a9c0e41cbfae3348558675ce6"; + hash = "sha256-ROcUAm0KgIjO2A2XBpS00IeEPgd8x4cjoMfn6X9C+Gw="; }; propagatedBuildInputs = [ @@ -24,13 +26,13 @@ buildPythonPackage rec { msrestazure azure-common azure-mgmt-core - ] ++ lib.optionals (!isPy3k) [ - azure-mgmt-nspkg ]; - pythonNamespaces = [ "azure.mgmt" ]; + pythonNamespaces = [ + "azure.mgmt" + ]; - # has no tests + # Module has no tests doCheck = false; meta = with lib; { diff --git a/pkgs/development/python-modules/azure-mgmt-netapp/default.nix b/pkgs/development/python-modules/azure-mgmt-netapp/default.nix index edf8057e503..8c2ec661f8c 100644 --- a/pkgs/development/python-modules/azure-mgmt-netapp/default.nix +++ b/pkgs/development/python-modules/azure-mgmt-netapp/default.nix @@ -1,4 +1,7 @@ -{ lib, buildPythonPackage, fetchPypi, isPy27 +{ lib +, buildPythonPackage +, fetchPypi +, pythonOlder , azure-common , azure-mgmt-core , msrest @@ -6,13 +9,14 @@ }: buildPythonPackage rec { - version = "6.0.1"; pname = "azure-mgmt-netapp"; - disabled = isPy27; + version = "7.0.0"; + + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "6ce683587be1638d8d77620b7af118060b8b7dfc4fd23d46a623a66edcb388e1"; + hash = "sha256-ziaddG+6MoPG18OYZyQ9HRx8nfGsz2UbWPC1pWacKto="; extension = "zip"; }; @@ -26,7 +30,10 @@ buildPythonPackage rec { # no tests included doCheck = false; - pythonImportsCheck = [ "azure.common" "azure.mgmt.netapp" ]; + pythonImportsCheck = [ + "azure.common" + "azure.mgmt.netapp" + ]; meta = with lib; { description = "Microsoft Azure NetApp Files Management Client Library for Python"; diff --git a/pkgs/development/python-modules/azure-multiapi-storage/default.nix b/pkgs/development/python-modules/azure-multiapi-storage/default.nix index ea6f47183ab..9bafac41ef3 100644 --- a/pkgs/development/python-modules/azure-multiapi-storage/default.nix +++ b/pkgs/development/python-modules/azure-multiapi-storage/default.nix @@ -7,13 +7,13 @@ }: buildPythonPackage rec { - version = "0.7.0"; + version = "0.8.0"; pname = "azure-multiapi-storage"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "cd4f184be8c9ca8aca969f93ed50dc7fe556d28ca11520440fc182cf876abdf9"; + sha256 = "sha256-ZRiqnxPRdSOqyRMwuvxqKiZcxMbhVEYJ09CIlepc/B4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/beancount_docverif/default.nix b/pkgs/development/python-modules/beancount_docverif/default.nix index 44ebb5d94f0..b39b52970f0 100644 --- a/pkgs/development/python-modules/beancount_docverif/default.nix +++ b/pkgs/development/python-modules/beancount_docverif/default.nix @@ -5,14 +5,14 @@ }: buildPythonPackage rec { - version = "1.0.0"; + version = "1.0.1"; pname = "beancount_docverif"; disabled = !isPy3k; src = fetchPypi { inherit pname version; - sha256 = "1kjc0axrxpvm828lqq5m2ikq0ls8xksbmm7312zw867gdx56x5aj"; + sha256 = "sha256-CFBv1FZP5JO+1MPnD86ttrO42zZlvE157zqig7s4HOg="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/beartype/default.nix b/pkgs/development/python-modules/beartype/default.nix index 097971c9ce3..8aeda35741c 100644 --- a/pkgs/development/python-modules/beartype/default.nix +++ b/pkgs/development/python-modules/beartype/default.nix @@ -7,14 +7,14 @@ buildPythonPackage rec { pname = "beartype"; - version = "0.10.2"; + version = "0.10.4"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-Lo1AUxj+QR7N2Tdif58zGBMSp5Pr0jmz2nacRDnLS5g="; + hash = "sha256-JOxp9qf05ul69APQjeJw3vMkhRgGAycJXSOxxN9kvyo="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/black/default.nix b/pkgs/development/python-modules/black/default.nix index 13f05fa6136..064fe8187ed 100644 --- a/pkgs/development/python-modules/black/default.nix +++ b/pkgs/development/python-modules/black/default.nix @@ -1,8 +1,12 @@ -{ stdenv, lib -, buildPythonPackage, fetchPypi, pythonOlder, setuptools-scm, pytestCheckHook +{ stdenv +, lib +, buildPythonPackage +, fetchPypi +, pythonOlder +, setuptools-scm +, pytestCheckHook , aiohttp , aiohttp-cors -, attrs , click , colorama , dataclasses @@ -19,13 +23,13 @@ buildPythonPackage rec { pname = "black"; - version = "21.12b0"; + version = "22.1.0"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-d7gPaTpWni5SeVhFljTxjfmwuiYluk4MLV2lvkLm8rM="; + hash = "sha256-p8AZLTVjX2/BF0vldct5FekuXdYp7nn9rw3PpBqAr7U="; }; nativeBuildInputs = [ setuptools-scm ]; @@ -61,17 +65,15 @@ buildPythonPackage rec { propagatedBuildInputs = [ aiohttp aiohttp-cors - attrs click colorama mypy-extensions pathspec platformdirs tomli - typed-ast # required for tests and python2 extra uvloop - ] ++ lib.optional (pythonOlder "3.7") dataclasses - ++ lib.optional (pythonOlder "3.8") typing-extensions; + ] ++ lib.optional (pythonOlder "3.8") typed-ast + ++ lib.optional (pythonOlder "3.10") typing-extensions; meta = with lib; { description = "The uncompromising Python code formatter"; diff --git a/pkgs/development/python-modules/boltztrap2/default.nix b/pkgs/development/python-modules/boltztrap2/default.nix index f80a8deb9ab..e697d97fea7 100644 --- a/pkgs/development/python-modules/boltztrap2/default.nix +++ b/pkgs/development/python-modules/boltztrap2/default.nix @@ -14,13 +14,13 @@ }: buildPythonPackage rec { - version = "20.7.1"; + version = "22.3.2"; pname = "BoltzTraP2"; disabled = pythonOlder "3.5"; src = fetchPypi { inherit pname version; - sha256 = "41caa32e5778323471d87033f23537f6178a7aea64fba894c7f2b2579b51f7ed"; + sha256 = "sha256-Yo37xdXxCQKkA+lrFEZp1DxjJy216Q6aYYT68PEx9JU="; }; dontUseCmakeConfigure = true; diff --git a/pkgs/development/python-modules/broadlink/default.nix b/pkgs/development/python-modules/broadlink/default.nix index dc1e4f37f3c..ba635a39257 100644 --- a/pkgs/development/python-modules/broadlink/default.nix +++ b/pkgs/development/python-modules/broadlink/default.nix @@ -2,22 +2,26 @@ , buildPythonPackage , fetchPypi , cryptography +, pythonOlder }: buildPythonPackage rec { pname = "broadlink"; - version = "0.18.0"; + version = "0.18.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "c66b3e4a097d6549f0fcc9ccdf289bd88f73f647ad9449e1c4e2958301ad1b04"; + hash = "sha256-KMfL1mY4th87gjPrdhvzQjdXucgwSChsykOCO3cPAD8="; }; propagatedBuildInputs = [ cryptography ]; - # no tests available + # Module has no tests doCheck = false; pythonImportsCheck = [ @@ -28,5 +32,6 @@ buildPythonPackage rec { description = "Python API for controlling Broadlink IR controllers"; homepage = "https://github.com/mjg59/python-broadlink"; license = licenses.mit; + maintainers = with maintainers; [ fab ]; }; } diff --git a/pkgs/development/python-modules/bumps/default.nix b/pkgs/development/python-modules/bumps/default.nix index 6e0637d2a6b..d1926c9631a 100644 --- a/pkgs/development/python-modules/bumps/default.nix +++ b/pkgs/development/python-modules/bumps/default.nix @@ -1,24 +1,37 @@ -{ lib, buildPythonPackage, fetchPypi, six}: +{ lib +, buildPythonPackage +, fetchPypi +, pythonOlder +, six +}: buildPythonPackage rec { pname = "bumps"; - version = "0.8.1"; + version = "0.9.0"; + format = "setuptools"; - propagatedBuildInputs = [six]; - - # Bumps does not provide its own tests.py, so the test - # always fails - doCheck = false; + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "f4f2ee712a1e468a2ce5c0a32f67739a83331f0cb7b9c50b9e7510daefc12169"; + hash = "sha256-BY9kg0ksKfrpQgsl1aDDJJ+zKJmURqwTtKxlITxse+o="; }; + propagatedBuildInputs = [ + six + ]; + + # Module has no tests + doCheck = false; + + pythonImportsCheck = [ + "bumps" + ]; + meta = with lib; { - homepage = "https://www.reflectometry.org/danse/software.html"; description = "Data fitting with bayesian uncertainty analysis"; - maintainers = with maintainers; [ rprospero ]; + homepage = "https://bumps.readthedocs.io/"; license = licenses.publicDomain; + maintainers = with maintainers; [ rprospero ]; }; } diff --git a/pkgs/development/python-modules/cchardet/default.nix b/pkgs/development/python-modules/cchardet/default.nix index e1c27d9e4fb..587d0d1f6c1 100644 --- a/pkgs/development/python-modules/cchardet/default.nix +++ b/pkgs/development/python-modules/cchardet/default.nix @@ -1,4 +1,5 @@ { lib +, stdenv , buildPythonPackage , fetchPypi , python @@ -20,9 +21,14 @@ buildPythonPackage rec { checkInputs = [ nose ]; + # on non x86-64 some charsets are identified as their superset, so we skip these tests (last checked with version 2.1.7) preCheck = '' cp -R src/tests $TMPDIR pushd $TMPDIR + '' + lib.optionalString (stdenv.hostPlatform.system != "x86_64-linux") '' + rm $TMPDIR/tests/testdata/th/tis-620.txt # identified as iso-8859-11, which is fine for all practical purposes + rm $TMPDIR/tests/testdata/ga/iso-8859-1.txt # identified as windows-1252, which is fine for all practical purposes + rm $TMPDIR/tests/testdata/fi/iso-8859-1.txt # identified as windows-1252, which is fine for all practical purposes ''; checkPhase = '' diff --git a/pkgs/development/python-modules/charset-normalizer/default.nix b/pkgs/development/python-modules/charset-normalizer/default.nix index ba7dd1db3b9..d406ea15fbd 100644 --- a/pkgs/development/python-modules/charset-normalizer/default.nix +++ b/pkgs/development/python-modules/charset-normalizer/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "charset-normalizer"; - version = "2.0.10"; + version = "2.0.12"; format = "setuptools"; disabled = pythonOlder "3.5"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "Ousret"; repo = "charset_normalizer"; rev = version; - hash = "sha256-QsUqrC2oycvyCbOzGmHahgNi40YZ0sujb3Cj8EnsGS8="; + hash = "sha256-d5vWnZtFR669l1Meg4ZSsYIyBlJZya7SpXJMx2AP8NU="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/check-manifest/default.nix b/pkgs/development/python-modules/check-manifest/default.nix index 608f3a0cac6..6c91633e8af 100644 --- a/pkgs/development/python-modules/check-manifest/default.nix +++ b/pkgs/development/python-modules/check-manifest/default.nix @@ -8,22 +8,21 @@ , pep517 , pytestCheckHook , toml +, pythonOlder }: buildPythonPackage rec { pname = "check-manifest"; - version = "0.47"; + version = "0.48"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "56dadd260a9c7d550b159796d2894b6d0bcc176a94cbc426d9bb93e5e48d12ce"; + hash = "sha256-O1dfHa3nvrMHjvS/M6lFGYNEV8coHbxyaxXFRmtVxlc="; }; - # Test requires filesystem access - postPatch = '' - substituteInPlace tests.py --replace "test_build_sdist" "no_test_build_sdist" - ''; - propagatedBuildInputs = [ build pep517 @@ -37,11 +36,18 @@ buildPythonPackage rec { pytestCheckHook ]; - pythonImportsCheck = [ "check_manifest" ]; + disabledTests = [ + # Test wants to setup a venv + "test_build_sdist_pep517_isolated" + ]; + + pythonImportsCheck = [ + "check_manifest" + ]; meta = with lib; { - homepage = "https://github.com/mgedmin/check-manifest"; description = "Check MANIFEST.in in a Python source package for completeness"; + homepage = "https://github.com/mgedmin/check-manifest"; license = licenses.mit; maintainers = with maintainers; [ lewo ]; }; diff --git a/pkgs/development/python-modules/chess/default.nix b/pkgs/development/python-modules/chess/default.nix index 9330a4b49e8..77b30071c07 100644 --- a/pkgs/development/python-modules/chess/default.nix +++ b/pkgs/development/python-modules/chess/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "chess"; - version = "1.8.0"; + version = "1.9.0"; disabled = pythonOlder "3.7"; @@ -15,7 +15,7 @@ buildPythonPackage rec { owner = "niklasf"; repo = "python-${pname}"; rev = "v${version}"; - sha256 = "sha256-ghBX0yRnggXliVREtrGxB/Xf0JWICeIi8XriSxS26Go="; + sha256 = "sha256-2/6pHU4gJnnVdO2KyXBe/RAbnEIuc2AY+h4TO70qiRk="; }; pythonImportsCheck = [ "chess" ]; diff --git a/pkgs/development/python-modules/claripy/default.nix b/pkgs/development/python-modules/claripy/default.nix index 10f5762f0c4..9816ff3782b 100644 --- a/pkgs/development/python-modules/claripy/default.nix +++ b/pkgs/development/python-modules/claripy/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "claripy"; - version = "9.1.11752"; + version = "9.1.12332"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Z50oKwS0MZVBEUeXfj9cgtPYXFAYf4i7QkgJiXdWrxo="; + sha256 = "sha256-YrR8OkDoop6kHAuk4cM4STYYOjjaMLZCQuE07/5IXqs="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/cle/default.nix b/pkgs/development/python-modules/cle/default.nix index e1b1b3b0bf4..6c8126172c0 100644 --- a/pkgs/development/python-modules/cle/default.nix +++ b/pkgs/development/python-modules/cle/default.nix @@ -15,7 +15,7 @@ let # The binaries are following the argr projects release cycle - version = "9.1.11752"; + version = "9.1.12332"; # Binary files from https://github.com/angr/binaries (only used for testing and only here) binaries = fetchFromGitHub { @@ -37,7 +37,7 @@ buildPythonPackage rec { owner = "angr"; repo = pname; rev = "v${version}"; - hash = "sha256-pnbFnv/te7U2jB6gNRvE9DQssBkFsara1g6Gtqf+WVo="; + hash = "sha256-xcj6Skzzmw5g+0KsBMLNOhRyXQA7nbgnc9YyfJLteCM="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/cloudscraper/default.nix b/pkgs/development/python-modules/cloudscraper/default.nix index cd11aa03f86..6f693f369cd 100644 --- a/pkgs/development/python-modules/cloudscraper/default.nix +++ b/pkgs/development/python-modules/cloudscraper/default.nix @@ -1,6 +1,6 @@ { lib , buildPythonPackage -, isPy3k +, pythonOlder , fetchPypi , requests , requests-toolbelt @@ -9,12 +9,14 @@ buildPythonPackage rec { pname = "cloudscraper"; - version = "1.2.58"; - disabled = !isPy3k; + version = "1.2.60"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "1wnzv2k8cm8q1x18r4zg8pcnpm4gsdp82hywwjimp2v2qll918nx"; + hash = "sha256-DTQTsv/59895UTsMmqxYtSfFosUWPRx8wMT4zKHQ9Oc="; }; propagatedBuildInputs = [ @@ -27,10 +29,12 @@ buildPythonPackage rec { # nixpkgs yet, and also aren't included in the PyPI bundle. TODO. doCheck = false; - pythonImportsCheck = [ "cloudscraper" ]; + pythonImportsCheck = [ + "cloudscraper" + ]; meta = with lib; { - description = "A Python module to bypass Cloudflare's anti-bot page"; + description = "Python module to bypass Cloudflare's anti-bot page"; homepage = "https://github.com/venomous/cloudscraper"; license = licenses.mit; maintainers = with maintainers; [ kini ]; diff --git a/pkgs/development/python-modules/cloudsmith-api/default.nix b/pkgs/development/python-modules/cloudsmith-api/default.nix index 92e5a71ee80..03203550600 100644 --- a/pkgs/development/python-modules/cloudsmith-api/default.nix +++ b/pkgs/development/python-modules/cloudsmith-api/default.nix @@ -9,14 +9,14 @@ buildPythonPackage rec { pname = "cloudsmith-api"; - version = "1.33.7"; + version = "1.42.3"; format = "wheel"; src = fetchPypi { pname = "cloudsmith_api"; inherit format version; - sha256 = "sha256-KNm2O2kZg+YzjtebsBoL7BOHCuffDELXm2k8vIFtKdk="; + sha256 = "sha256-P0QuKkyFk3jvYJwtul0/eUTrDyj2QKAjU/Ac+4VCYYk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/coqui-trainer/default.nix b/pkgs/development/python-modules/coqui-trainer/default.nix index 5ff53b8eb75..de04e444e83 100644 --- a/pkgs/development/python-modules/coqui-trainer/default.nix +++ b/pkgs/development/python-modules/coqui-trainer/default.nix @@ -4,7 +4,7 @@ , coqpit , fsspec -, pytorch-bin +, pytorch , pytestCheckHook , soundfile @@ -14,7 +14,7 @@ let pname = "coqui-trainer"; - version = "0.0.4"; + version = "0.0.5"; in buildPythonPackage { inherit pname version; @@ -23,21 +23,19 @@ buildPythonPackage { src = fetchFromGitHub { owner = "coqui-ai"; repo = "Trainer"; - # https://github.com/coqui-ai/Trainer/issues/4 - rev = "776eba829231543d3207927fc69b321d121e527c"; - hash = "sha256-ICveftJjBNsCgegTmd/ewd/Y6XGMg7YOvchx640RFPI="; + rev = "v${version}"; + hash = "sha256-NsgCh+N2qWmRkTOjXqisVCP5aInH2zcNz6lsnIfVLiY="; }; propagatedBuildInputs = [ coqpit fsspec - pytorch-bin + pytorch soundfile tensorboardx ]; - # tests are failing; tests require the clearml library - # https://github.com/coqui-ai/Trainer/issues/5 + # only one test and that requires training data from the internet doCheck = false; checkInputs = [ diff --git a/pkgs/development/python-modules/discogs-client/default.nix b/pkgs/development/python-modules/discogs-client/default.nix index f4940cf7c61..0295735abd7 100644 --- a/pkgs/development/python-modules/discogs-client/default.nix +++ b/pkgs/development/python-modules/discogs-client/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "discogs-client"; - version = "2.3.13"; + version = "2.3.14"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "joalla"; repo = "discogs_client"; rev = "v${version}"; - sha256 = "sha256-TOja0pCJv8TAI0ns8M/tamZ5Pp8k5sSKDnvN4SeKtW8="; + sha256 = "sha256-HJxqTwZ9byjZxdftQPTkVo0Ufio9gNGH69q5Q2gYR00="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/django-picklefield/default.nix b/pkgs/development/python-modules/django-picklefield/default.nix index 4710de2c7ec..b1dab2e73c9 100644 --- a/pkgs/development/python-modules/django-picklefield/default.nix +++ b/pkgs/development/python-modules/django-picklefield/default.nix @@ -1,8 +1,9 @@ -{ lib, buildPythonPackage, fetchFromGitHub, django, pytest, pytest-django }: +{ lib, buildPythonPackage, fetchFromGitHub, django, pytest, pytest-django, python }: buildPythonPackage rec { pname = "django-picklefield"; version = "3.0.1"; + format = "setuptools"; # The PyPi source doesn't contain tests src = fetchFromGitHub { @@ -14,17 +15,20 @@ buildPythonPackage rec { propagatedBuildInputs = [ django ]; - checkInputs = [ pytest pytest-django ]; + # Tests are failing with Django 3.2 + # https://github.com/gintas/django-picklefield/issues/58 + doCheck = false; checkPhase = '' - PYTHONPATH="$(pwd):$PYTHONPATH" \ - DJANGO_SETTINGS_MODULE=tests.settings \ - pytest tests/tests.py + runHook preCheck + ${python.interpreter} -m django test --settings=tests.settings + runHook postCheck ''; - meta = { + meta = with lib; { description = "A pickled object field for Django"; homepage = "https://github.com/gintas/django-picklefield"; - license = lib.licenses.mit; + license = licenses.mit; + maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/django/2.nix b/pkgs/development/python-modules/django/2.nix index c4df27beaaa..727bf304fdb 100644 --- a/pkgs/development/python-modules/django/2.nix +++ b/pkgs/development/python-modules/django/2.nix @@ -5,13 +5,14 @@ }: buildPythonPackage rec { - pname = "Django"; + pname = "django"; version = "2.2.27"; disabled = !isPy3k; src = fetchPypi { - inherit pname version; + pname = "Django"; + inherit version; sha256 = "sha256-HuNwRrC/K2HoOzoB0GcyNRbsO28rF81JsTJt1LqdyRM="; }; diff --git a/pkgs/development/python-modules/django/3.nix b/pkgs/development/python-modules/django/3.nix index 3ed7024c349..1538b8a82b4 100644 --- a/pkgs/development/python-modules/django/3.nix +++ b/pkgs/development/python-modules/django/3.nix @@ -12,13 +12,14 @@ }: buildPythonPackage rec { - pname = "Django"; + pname = "django"; version = "3.2.12"; disabled = pythonOlder "3.7"; src = fetchPypi { - inherit pname version; + pname = "Django"; + inherit version; sha256 = "sha256-l3Lmk1cD5Z6ZOWCDLWamFM8CM6HFEjvGIk7MataeQeI="; }; diff --git a/pkgs/development/python-modules/docx2txt/default.nix b/pkgs/development/python-modules/docx2txt/default.nix new file mode 100644 index 00000000000..6b3c2777d78 --- /dev/null +++ b/pkgs/development/python-modules/docx2txt/default.nix @@ -0,0 +1,26 @@ +{ lib +, buildPythonPackage +, fetchPypi +}: + +buildPythonPackage rec { + pname = "docx2txt"; + version = "0.8"; + format = "setuptools"; + + src = fetchPypi { + inherit pname version; + hash = "sha256-LAbZjXz+LTlH5XYKV9kk4/8HdFs3nIc3cjki5wCSNuU="; + }; + + pythonImportsCheck = [ + "docx2txt" + ]; + + meta = with lib; { + description = "A pure python-based utility to extract text and images from docx files"; + homepage = "https://github.com/ankushshah89/python-docx2txt"; + license = licenses.mit; + maintainers = with maintainers; [ ilkecan ]; + }; +} diff --git a/pkgs/development/python-modules/env-canada/default.nix b/pkgs/development/python-modules/env-canada/default.nix index 32b3098ffc7..18047eb719a 100644 --- a/pkgs/development/python-modules/env-canada/default.nix +++ b/pkgs/development/python-modules/env-canada/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "env-canada"; - version = "0.5.20"; + version = "0.5.21"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "michaeldavie"; repo = "env_canada"; rev = "v${version}"; - sha256 = "sha256-gYl5+rtOzci3nhgP74VM37tNk9pPWgcNBfcSSG1fSJs="; + sha256 = "sha256-jildWpYWll5j7siYhNECMBjz9bF41xFA6NyydWNdgQE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/eventlet/default.nix b/pkgs/development/python-modules/eventlet/default.nix index 7c8f520647e..096279b3453 100644 --- a/pkgs/development/python-modules/eventlet/default.nix +++ b/pkgs/development/python-modules/eventlet/default.nix @@ -57,6 +57,8 @@ buildPythonPackage rec { "test_hosts_no_network" "test_leakage_from_tracebacks" "test_patcher_existing_locks_locked" + # broken with pyopenssl 22.0.0 + "test_sendall_timeout" ]; disabledTestPaths = [ diff --git a/pkgs/development/python-modules/faraday-plugins/default.nix b/pkgs/development/python-modules/faraday-plugins/default.nix index 01857660a74..42f8a486050 100644 --- a/pkgs/development/python-modules/faraday-plugins/default.nix +++ b/pkgs/development/python-modules/faraday-plugins/default.nix @@ -16,14 +16,14 @@ buildPythonPackage rec { pname = "faraday-plugins"; - version = "1.6.0"; + version = "1.6.1"; format = "setuptools"; src = fetchFromGitHub { owner = "infobyte"; repo = "faraday_plugins"; rev = "v${version}"; - sha256 = "sha256-mvYbX8puqcT9kl1Abi785ptmmg9CxKZVTO6gPpk4sKU="; + sha256 = "sha256-NpPVA+fruI/xX0KMjRuRuMK8HYc/0ErbDhJOCNXKhyY="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/flake8-blind-except/default.nix b/pkgs/development/python-modules/flake8-blind-except/default.nix index c3974d0e007..ee3f46d078c 100644 --- a/pkgs/development/python-modules/flake8-blind-except/default.nix +++ b/pkgs/development/python-modules/flake8-blind-except/default.nix @@ -1,16 +1,32 @@ -{ lib, fetchPypi, buildPythonPackage }: +{ lib +, fetchPypi +, buildPythonPackage +, pythonOlder +}: buildPythonPackage rec { pname = "flake8-blind-except"; - version = "0.2.0"; + version = "0.2.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; + src = fetchPypi { inherit pname version; - sha256 = "02a860a1a19cb602c006a3fe0778035b0d14d3f57929b4b798bc7d6684f204e5"; + hash = "sha256-8lpXWp3LPus8dgv5wi22C4taIxICJO0fqppD913X3RY="; }; - meta = { - homepage = "https://github.com/elijahandrews/flake8-blind-except"; + + # Module has no tests + doCheck = false; + + pythonImportsCheck = [ + "flake8_blind_except" + ]; + + meta = with lib; { description = "A flake8 extension that checks for blind except: statements"; - maintainers = with lib.maintainers; [ johbo ]; - license = lib.licenses.mit; + homepage = "https://github.com/elijahandrews/flake8-blind-except"; + license = licenses.mit; + maintainers = with maintainers; [ johbo ]; }; } diff --git a/pkgs/development/python-modules/flatdict/default.nix b/pkgs/development/python-modules/flatdict/default.nix new file mode 100644 index 00000000000..186118d3010 --- /dev/null +++ b/pkgs/development/python-modules/flatdict/default.nix @@ -0,0 +1,27 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +}: + +buildPythonPackage rec { + pname = "flatdict"; + version = "4.0.0"; + + src = fetchFromGitHub { + owner = "gmr"; + repo = pname; + rev = version; + hash = "sha256-qH4MMDSXf92BPavnRdCka6lRoWZg+2KnHpHA8kt5JaM="; + }; + + pythonImportsCheck = [ + "flatdict" + ]; + + meta = with lib; { + description = "Python module for interacting with nested dicts as a single level dict with delimited keys"; + homepage = "https://github.com/gmr/flatdict"; + license = licenses.bsd3; + maintainers = with maintainers; [ lovesegfault ]; + }; +} diff --git a/pkgs/development/python-modules/forecast-solar/default.nix b/pkgs/development/python-modules/forecast-solar/default.nix index 6a77f57acf9..a1d3741584c 100644 --- a/pkgs/development/python-modules/forecast-solar/default.nix +++ b/pkgs/development/python-modules/forecast-solar/default.nix @@ -9,13 +9,13 @@ buildPythonPackage rec { pname = "forecast-solar"; - version = "2.1.0"; + version = "2.2.0"; src = fetchFromGitHub { owner = "home-assistant-libs"; repo = "forecast_solar"; rev = version; - sha256 = "sha256-UrLy+j8YDWuS9pciEDKb/+UoCcw54XWiIUAEYC72/W0="; + sha256 = "sha256-2gex50QEN55uUa8SfAQA7iDZ3SVnpOTXfD3Sxq7KvNw="; }; PACKAGE_VERSION = version; diff --git a/pkgs/development/python-modules/frozenlist/default.nix b/pkgs/development/python-modules/frozenlist/default.nix index 34660645b59..1bc295fbe33 100644 --- a/pkgs/development/python-modules/frozenlist/default.nix +++ b/pkgs/development/python-modules/frozenlist/default.nix @@ -8,14 +8,16 @@ buildPythonPackage rec { pname = "frozenlist"; - version = "1.2.0"; - disabled = pythonOlder "3.6"; + version = "1.3.0"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "aio-libs"; repo = pname; rev = "v${version}"; - sha256 = "sha256-rTbekdceC5QK0aiySi/4QUwaEoDfTlLrx2t6Kb9bH7U="; + hash = "sha256-cHKqkvsBUN7If+8swbd6aafFrSgnop3YlweBLPOHzyU="; }; nativeBuildInputs = [ @@ -35,7 +37,9 @@ buildPythonPackage rec { cython frozenlist/_frozenlist.pyx ''; - pythonImportsCheck = [ "frozenlist" ]; + pythonImportsCheck = [ + "frozenlist" + ]; meta = with lib; { description = "Python module for list-like structure"; diff --git a/pkgs/development/python-modules/gaphas/default.nix b/pkgs/development/python-modules/gaphas/default.nix index c3541bcc30a..0f23415fe6e 100644 --- a/pkgs/development/python-modules/gaphas/default.nix +++ b/pkgs/development/python-modules/gaphas/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "gaphas"; - version = "3.5.0"; + version = "3.5.1"; disabled = pythonOlder "3.7"; format = "pyproject"; src = fetchPypi { inherit pname version; - sha256 = "526f1943dd54efe91fbf45db38049103611fbac5939c42ad172ba9d2dce71fe1"; + sha256 = "sha256-71oYuLhqJ7bst0W7v9tQSoaisjONZSa9zEWzYWtGl2E="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/globus-sdk/default.nix b/pkgs/development/python-modules/globus-sdk/default.nix index ef809dcf700..6895db19abc 100644 --- a/pkgs/development/python-modules/globus-sdk/default.nix +++ b/pkgs/development/python-modules/globus-sdk/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "globus-sdk"; - version = "3.5.0"; + version = "3.6.0"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "globus"; repo = "globus-sdk-python"; rev = version; - hash = "sha256-doyKTGPm4tpmLrXQgsDOGklG54HSN8VFCAXa4Q73Uos="; + hash = "sha256-SBLQ+uSZE8YkT+fQWIKGlfhocJXX5k9kSejAbjazjM8="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-auth/default.nix b/pkgs/development/python-modules/google-auth/default.nix index c7fcb1a48ed..203053d53cd 100644 --- a/pkgs/development/python-modules/google-auth/default.nix +++ b/pkgs/development/python-modules/google-auth/default.nix @@ -59,6 +59,15 @@ buildPythonPackage rec { "test_request_headers" "test_request_error" "test_request_basic" + ] ++ lib.optionals (stdenv.isDarwin && stdenv.isAarch64) [ + # E MemoryError: Cannot allocate write+execute memory for ffi.callback(). + # You might be running on a system that prevents this. + # For more information, see https://cffi.readthedocs.io/en/latest/using.html#callbacks + "test_configure_mtls_channel_with_callback" + "test_configure_mtls_channel_with_metadata" + "TestDecryptPrivateKey" + "TestMakeMutualTlsHttp" + "TestMutualTlsAdapter" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/google-cloud-bigtable/default.nix b/pkgs/development/python-modules/google-cloud-bigtable/default.nix index 9ffa885ab4a..9763cd4e0ba 100644 --- a/pkgs/development/python-modules/google-cloud-bigtable/default.nix +++ b/pkgs/development/python-modules/google-cloud-bigtable/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "google-cloud-bigtable"; - version = "2.7.0"; + version = "2.7.1"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-TUgC/6IZ9kNE5iDtbhKPHJqo3sv9W+nl7KcxuXfrbyM="; + hash = "sha256-TUMgrv1JNt8h6DzCNtk0Fm4LQFC73/FNfpgTs9jhkYs="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-redis/default.nix b/pkgs/development/python-modules/google-cloud-redis/default.nix index fc1ca312125..ab432454bba 100644 --- a/pkgs/development/python-modules/google-cloud-redis/default.nix +++ b/pkgs/development/python-modules/google-cloud-redis/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "google-cloud-redis"; - version = "2.7.1"; + version = "2.8.0"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-tz2upcRjgE6/4cB0riARwot3Vhw4QSKqqHTlJS3i7is="; + hash = "sha256-7L3SjViQmzTp//5LWWG9VG+TQuPay70KZdUuzhy7HS0="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-secret-manager/default.nix b/pkgs/development/python-modules/google-cloud-secret-manager/default.nix index e3c3e05ac18..f7c79521b63 100644 --- a/pkgs/development/python-modules/google-cloud-secret-manager/default.nix +++ b/pkgs/development/python-modules/google-cloud-secret-manager/default.nix @@ -12,11 +12,11 @@ buildPythonPackage rec { pname = "google-cloud-secret-manager"; - version = "2.9.1"; + version = "2.9.2"; src = fetchPypi { inherit pname version; - sha256 = "sha256-apn1ex/2VX18GHgN5+JYurzTKMqzPTNqTNOAI+DEBLw="; + sha256 = "sha256-W93SDJR8bUPQX9KzoZ6YvV9kU+Twd9huH09Smap481g="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/google-cloud-storage/default.nix b/pkgs/development/python-modules/google-cloud-storage/default.nix index f77c718ed8b..629c323506b 100644 --- a/pkgs/development/python-modules/google-cloud-storage/default.nix +++ b/pkgs/development/python-modules/google-cloud-storage/default.nix @@ -9,15 +9,19 @@ , google-cloud-testutils , google-resumable-media , mock +, pythonOlder }: buildPythonPackage rec { pname = "google-cloud-storage"; - version = "2.1.0"; + version = "2.2.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "0a5e7ab1a38d2c24be8e566e50b8b0daa8af8fd49d4ab312b1fda5c147429893"; + hash = "sha256-AkT0YScQy17ERfxndDh1ZOI/mCM2P7QIsock4hAkAbc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/graphql-subscription-manager/default.nix b/pkgs/development/python-modules/graphql-subscription-manager/default.nix index 660a6f51688..2ca6a134ee2 100644 --- a/pkgs/development/python-modules/graphql-subscription-manager/default.nix +++ b/pkgs/development/python-modules/graphql-subscription-manager/default.nix @@ -8,7 +8,8 @@ buildPythonPackage rec { pname = "graphql-subscription-manager"; - version = "0.5.4"; + version = "0.5.5"; + format = "setuptools"; disabled = pythonOlder "3.7"; @@ -16,7 +17,7 @@ buildPythonPackage rec { owner = "Danielhiversen"; repo = "PyGraphqlWebsocketManager"; rev = version; - sha256 = "sha256-J3us0xZN1jOFRcvUQg8PQP6AVHa/swGjKU8IivmfjQE="; + hash = "sha256-7MqFsttMNnWmmWKj1zaOORBTDGt6Wm8GU7w56DfPl2c="; }; propagatedBuildInputs = [ @@ -27,7 +28,9 @@ buildPythonPackage rec { # no tests implemented doCheck = false; - pythonImportsCheck = [ "graphql_subscription_manager" ]; + pythonImportsCheck = [ + "graphql_subscription_manager" + ]; meta = with lib; { description = "Python3 library for graphql subscription manager"; diff --git a/pkgs/development/python-modules/gruut-ipa/default.nix b/pkgs/development/python-modules/gruut-ipa/default.nix index ad1da8b2917..f0824670731 100644 --- a/pkgs/development/python-modules/gruut-ipa/default.nix +++ b/pkgs/development/python-modules/gruut-ipa/default.nix @@ -1,32 +1,33 @@ { lib , buildPythonPackage , fetchFromGitHub -, pkgs +, espeak +, numpy , python }: buildPythonPackage rec { pname = "gruut-ipa"; - version = "0.12.0"; + version = "0.13.0"; format = "setuptools"; src = fetchFromGitHub { owner = "rhasspy"; repo = pname; rev = "v${version}"; - sha256 = "sha256-6pMdBKbp++/5321rc8A2euOSXZCHzHg+wmaEaMZ0egw="; + sha256 = "sha256-Q2UKELoG8OaAPxIrZNCpXgeWZ2fCzb3g3SOVzCm/gg0="; }; postPatch = '' - patchShebangs bin/speak-ipa + patchShebangs bin/* substituteInPlace bin/speak-ipa \ --replace '${"\${src_dir}:"}' "$out/lib/${python.libPrefix}/site-packages:" \ - --replace "do espeak" "do ${pkgs.espeak}/bin/espeak" + --replace "do espeak" "do ${espeak}/bin/espeak" ''; - postInstall = '' - install -m0755 bin/speak-ipa $out/bin/speak-ipa - ''; + propagatedBuildInputs = [ + numpy + ]; checkPhase = '' runHook preCheck diff --git a/pkgs/development/python-modules/gruut/default.nix b/pkgs/development/python-modules/gruut/default.nix index f1e490a65cb..5078c6fdb39 100644 --- a/pkgs/development/python-modules/gruut/default.nix +++ b/pkgs/development/python-modules/gruut/default.nix @@ -36,14 +36,14 @@ let in buildPythonPackage rec { pname = "gruut"; - version = "2.2.0"; + version = "2.2.3"; format = "setuptools"; src = fetchFromGitHub { owner = "rhasspy"; repo = pname; rev = "v${version}"; - sha256 = "sha256-9vj3x2IjTso8ksN1cqe5frwg0Y3GhOB6bPWvaBSBOf8="; + sha256 = "sha256-B5fPUW4YaMzDDXxncfrWwxGdUizuaxnPImNMf1ZZJ/I="; }; postPatch = '' diff --git a/pkgs/development/python-modules/hahomematic/default.nix b/pkgs/development/python-modules/hahomematic/default.nix index 515d6ed8d95..be9be54a79a 100644 --- a/pkgs/development/python-modules/hahomematic/default.nix +++ b/pkgs/development/python-modules/hahomematic/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "hahomematic"; - version = "0.36.3"; + version = "0.38.2"; format = "setuptools"; disabled = pythonOlder "3.9"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "danielperna84"; repo = pname; rev = version; - sha256 = "sha256-S5KWyW7aeR2qdBzXQ4ka2nuxGPt69LHyq2CUdRPG9ig="; + sha256 = "sha256-oyO4+zxyhr2azUdeNfw0WjgN6LFxi3+svJ/B/tUEqjQ="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/httplib2/default.nix b/pkgs/development/python-modules/httplib2/default.nix index 9a8a8853780..cd2134418a7 100644 --- a/pkgs/development/python-modules/httplib2/default.nix +++ b/pkgs/development/python-modules/httplib2/default.nix @@ -55,6 +55,7 @@ buildPythonPackage rec { ] ++ lib.optionals (stdenv.isDarwin) [ # fails with HTTP 408 Request Timeout, instead of expected 200 OK "test_timeout_subsequent" + "test_connection_close" ]; pytestFlagsArray = [ diff --git a/pkgs/development/python-modules/identify/default.nix b/pkgs/development/python-modules/identify/default.nix index 9f2a066ebdf..18a12fe9e19 100644 --- a/pkgs/development/python-modules/identify/default.nix +++ b/pkgs/development/python-modules/identify/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "identify"; - version = "2.4.11"; + version = "2.4.12"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "pre-commit"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Q86n2uAjmA05h+0NE77TBkbPiKoRYqB1b2H3MbOVmMY="; + sha256 = "sha256-kXhUlt+lcqK3ohOA8eziFcrm4U/FAYWpie4rH5xRejI="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/importlib-metadata/default.nix b/pkgs/development/python-modules/importlib-metadata/default.nix index 13b26e337ac..3917742a55a 100644 --- a/pkgs/development/python-modules/importlib-metadata/default.nix +++ b/pkgs/development/python-modules/importlib-metadata/default.nix @@ -10,15 +10,15 @@ buildPythonPackage rec { pname = "importlib-metadata"; - version = "4.10.1"; - format = "setuptools"; + version = "4.11.0"; + format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { pname = "importlib_metadata"; inherit version; - hash = "sha256-lR8NiltyYOnbXkHUKShbX0UekoR58Z2AgYh4Un026V4="; + hash = "sha256-nl5VO7uhhDy0oAgjAUuQdha+Ru5QPSuboAHSFKjaIY8="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/influxdb-client/default.nix b/pkgs/development/python-modules/influxdb-client/default.nix index 85456fcc15f..226d43b2bc4 100644 --- a/pkgs/development/python-modules/influxdb-client/default.nix +++ b/pkgs/development/python-modules/influxdb-client/default.nix @@ -14,7 +14,7 @@ buildPythonPackage rec { pname = "influxdb-client"; - version = "1.26.0"; + version = "1.27.0"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -23,7 +23,7 @@ buildPythonPackage rec { owner = "influxdata"; repo = "influxdb-client-python"; rev = "v${version}"; - hash = "sha256-9MI6AgFTEw9dnBWdry3FnPERXnXZJhbYX4tXj9sGMkg="; + hash = "sha256-M0Ob3HjIhlYSIWXGM54NXiEMSCmZzNLLNsCRyxAcjMc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/iniconfig/default.nix b/pkgs/development/python-modules/iniconfig/default.nix index 90761f76f9d..a8a4a611fee 100644 --- a/pkgs/development/python-modules/iniconfig/default.nix +++ b/pkgs/development/python-modules/iniconfig/default.nix @@ -1,4 +1,4 @@ -{ lib, buildPythonPackage, fetchPypi }: +{ lib, buildPythonPackage, fetchPypi, setuptools-scm }: buildPythonPackage rec { pname = "iniconfig"; @@ -9,12 +9,14 @@ buildPythonPackage rec { sha256 = "bc3af051d7d14b2ee5ef9969666def0cd1a000e121eaea580d4a313df4b37f32"; }; + nativeBuildInputs = [ setuptools-scm ]; + doCheck = false; # avoid circular import with pytest pythonImportsCheck = [ "iniconfig" ]; meta = with lib; { description = "brain-dead simple parsing of ini files"; - homepage = "https://github.com/RonnyPfannschmidt/iniconfig"; + homepage = "https://github.com/pytest-dev/iniconfig"; license = licenses.mit; maintainers = with maintainers; [ jonringer ]; }; diff --git a/pkgs/development/python-modules/intellifire4py/default.nix b/pkgs/development/python-modules/intellifire4py/default.nix index 329d7a77dfd..b93b9b9c957 100644 --- a/pkgs/development/python-modules/intellifire4py/default.nix +++ b/pkgs/development/python-modules/intellifire4py/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "intellifire4py"; - version = "1.0.0"; + version = "1.0.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "jeeftor"; repo = pname; rev = version; - hash = "sha256-lQV5KpASbrz+wCi9x/0rNYrQE+dLCZzsNBFhYAQvPH4="; + hash = "sha256-t3wJQ7dXX65yqxMYsFggViqqGvLCdASw1QLc5DJBn+4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/internetarchive/default.nix b/pkgs/development/python-modules/internetarchive/default.nix index d197ba9691b..c50563f5500 100644 --- a/pkgs/development/python-modules/internetarchive/default.nix +++ b/pkgs/development/python-modules/internetarchive/default.nix @@ -1,7 +1,6 @@ { buildPythonPackage , fetchPypi , pytest -, six , tqdm , pyyaml , docopt @@ -10,25 +9,25 @@ , args , schema , responses -, backports_csv -, isPy3k , lib , glibcLocales , setuptools , urllib3 +, pythonOlder }: buildPythonPackage rec { pname = "internetarchive"; - version = "2.3.0"; + version = "3.0.0"; + + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "fa89dc4be3e0a0aee24810a4a754e24adfd07edf710c645b4f642422c6078b8d"; + sha256 = "sha256-fRcqsT8p/tqXUpU2/9lAEF1IT8Cy5KK0+jKaeVwZshI="; }; propagatedBuildInputs = [ - six tqdm pyyaml docopt @@ -38,7 +37,7 @@ buildPythonPackage rec { schema setuptools urllib3 - ] ++ lib.optionals (!isPy3k) [ backports_csv ]; + ]; checkInputs = [ pytest responses glibcLocales ]; diff --git a/pkgs/development/python-modules/ipython/default.nix b/pkgs/development/python-modules/ipython/default.nix index 432f83e75cc..c1c0b049dc8 100644 --- a/pkgs/development/python-modules/ipython/default.nix +++ b/pkgs/development/python-modules/ipython/default.nix @@ -26,7 +26,7 @@ , testpath }: -buildPythonPackage (rec { +buildPythonPackage rec { pname = "ipython"; version = "8.0.1"; format = "pyproject"; @@ -76,14 +76,15 @@ buildPythonPackage (rec { testpath ]; + disabledTests = lib.optionals (stdenv.isDarwin) [ + # FileNotFoundError: [Errno 2] No such file or directory: 'pbpaste' + "test_clipboard_get" + ]; + meta = with lib; { description = "IPython: Productive Interactive Computing"; homepage = "http://ipython.org/"; license = licenses.bsd3; maintainers = with maintainers; [ bjornfor fridh ]; }; -} // lib.optionalAttrs stdenv.isDarwin { - disabledTests = [ - "test_clipboard_get" # uses pbpaste - ]; -}) +} diff --git a/pkgs/development/python-modules/itemadapter/default.nix b/pkgs/development/python-modules/itemadapter/default.nix index 5d85ad71952..b082387e23c 100644 --- a/pkgs/development/python-modules/itemadapter/default.nix +++ b/pkgs/development/python-modules/itemadapter/default.nix @@ -1,25 +1,33 @@ -{ lib, buildPythonPackage, fetchPypi, isPy27 }: +{ lib +, buildPythonPackage +, fetchPypi +, pythonOlder +}: buildPythonPackage rec { pname = "itemadapter"; - version = "0.4.0"; + version = "0.5.0"; + format = "setuptools"; - disabled = isPy27; + disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "f05df8da52619da4b8c7f155d8a15af19083c0c7ad941d8c1de799560ad994ca"; + hash = "sha256-BbanndMaepk9+y6Dhqkcl+O4xs8otyVT6AjmJeC4fCA="; }; - doCheck = false; # infinite recursion with Scrapy + # Infinite recursion with Scrapy + doCheck = false; - pythonImportsCheck = [ "itemadapter" ]; + pythonImportsCheck = [ + "itemadapter" + ]; meta = with lib; { description = "Common interface for data container classes"; homepage = "https://github.com/scrapy/itemadapter"; changelog = "https://github.com/scrapy/itemadapter/raw/v${version}/Changelog.md"; license = licenses.bsd3; - maintainers = [ maintainers.marsam ]; + maintainers = with maintainers; [ marsam ]; }; } diff --git a/pkgs/development/python-modules/jax/default.nix b/pkgs/development/python-modules/jax/default.nix index d5e53654019..332cac3133c 100644 --- a/pkgs/development/python-modules/jax/default.nix +++ b/pkgs/development/python-modules/jax/default.nix @@ -19,7 +19,7 @@ let in buildPythonPackage rec { pname = "jax"; - version = "0.3.1"; + version = "0.3.4"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -27,8 +27,8 @@ buildPythonPackage rec { src = fetchFromGitHub { owner = "google"; repo = pname; - rev = "${pname}-v${version}"; - sha256 = "0bpqmyc4hg25i8cfnrx3y2bwgp6h5rri2a1q9i8gb6r0id97zvcn"; + rev = "jax-v${version}"; + sha256 = "sha256-RZqSJP2vtt8U6nmftV2VzfkMGkkk3100QqsjI7PpQbc="; }; patches = [ diff --git a/pkgs/development/python-modules/jaxlib/bin.nix b/pkgs/development/python-modules/jaxlib/bin.nix index 7e6b00429df..0929831e32a 100644 --- a/pkgs/development/python-modules/jaxlib/bin.nix +++ b/pkgs/development/python-modules/jaxlib/bin.nix @@ -120,9 +120,15 @@ buildPythonPackage rec { done ''; - # pip dependencies and optionally cudatoolkit. Note that cudatoolkit is - # necessary since jaxlib looks for "ptxas" in $PATH. - propagatedBuildInputs = [ absl-py flatbuffers scipy ] ++ lib.optional cudaSupport cudatoolkit_11; + propagatedBuildInputs = [ absl-py flatbuffers scipy ]; + + # Note that cudatoolkit is snecessary since jaxlib looks for "ptxas" in $PATH. + # See https://github.com/NixOS/nixpkgs/pull/164176#discussion_r828801621 for + # more info. + postInstall = lib.optional cudaSupport '' + mkdir -p $out/bin + ln -s ${cudatoolkit_11}/bin/ptxas $out/bin/ptxas + ''; pythonImportsCheck = [ "jaxlib" ]; diff --git a/pkgs/development/python-modules/jaxlib/default.nix b/pkgs/development/python-modules/jaxlib/default.nix index 664e109719a..363bfe56134 100644 --- a/pkgs/development/python-modules/jaxlib/default.nix +++ b/pkgs/development/python-modules/jaxlib/default.nix @@ -259,7 +259,13 @@ buildPythonPackage { src = "${bazel-build}/jaxlib-${version}-cp${builtins.replaceStrings ["."] [""] python.pythonVersion}-none-manylinux2010_${stdenv.targetPlatform.linuxArch}.whl"; + # Note that cudatoolkit is necessary since jaxlib looks for "ptxas" in $PATH. + # See https://github.com/NixOS/nixpkgs/pull/164176#discussion_r828801621 for + # more info. postInstall = lib.optionalString cudaSupport '' + mkdir -p $out/bin + ln -s ${cudatoolkit}/bin/ptxas $out/bin/ptxas + find $out -type f \( -name '*.so' -or -name '*.so.*' \) | while read lib; do addOpenGLRunpath "$lib" patchelf --set-rpath "${cudatoolkit}/lib:${cudatoolkit.lib}/lib:${cudnn}/lib:${nccl}/lib:$(patchelf --print-rpath "$lib")" "$lib" diff --git a/pkgs/development/python-modules/jedi/default.nix b/pkgs/development/python-modules/jedi/default.nix index d9884ab3d9f..f271920706f 100644 --- a/pkgs/development/python-modules/jedi/default.nix +++ b/pkgs/development/python-modules/jedi/default.nix @@ -3,9 +3,7 @@ , buildPythonPackage , pythonOlder , fetchFromGitHub -, colorama , django -, docopt , pytestCheckHook , parso }: @@ -26,9 +24,7 @@ buildPythonPackage rec { propagatedBuildInputs = [ parso ]; checkInputs = [ - colorama django - docopt pytestCheckHook ]; @@ -50,7 +46,7 @@ buildPythonPackage rec { meta = with lib; { homepage = "https://github.com/davidhalter/jedi"; description = "An autocompletion tool for Python that can be used for text editors"; - license = licenses.lgpl3Plus; + license = licenses.mit; maintainers = with maintainers; [ ]; }; } diff --git a/pkgs/development/python-modules/jupyterlab/default.nix b/pkgs/development/python-modules/jupyterlab/default.nix index c000bb050d8..fbea0935ff3 100644 --- a/pkgs/development/python-modules/jupyterlab/default.nix +++ b/pkgs/development/python-modules/jupyterlab/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "jupyterlab"; - version = "3.3.1"; + version = "3.3.2"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-zkgnmTeccKqH5jtZ4sU3l3nOGGWLkkYM0gu0QVSGWXM="; + sha256 = "sha256-PHFr9VkssoxcVcYVxuW9PvxxiY9pV9E3GbVkeLu7WHo="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/jxmlease/default.nix b/pkgs/development/python-modules/jxmlease/default.nix index 727548f21d5..5036ede5e5e 100644 --- a/pkgs/development/python-modules/jxmlease/default.nix +++ b/pkgs/development/python-modules/jxmlease/default.nix @@ -18,6 +18,10 @@ buildPythonPackage rec { lxml ]; + # tests broken in expat bump + # https://github.com/Juniper/jxmlease/issues/26 + doCheck = false; + checkPhase = '' runHook preCheck ${python.interpreter} -m unittest discover -v diff --git a/pkgs/development/python-modules/keyrings-google-artifactregistry-auth/default.nix b/pkgs/development/python-modules/keyrings-google-artifactregistry-auth/default.nix new file mode 100644 index 00000000000..d77dc444f80 --- /dev/null +++ b/pkgs/development/python-modules/keyrings-google-artifactregistry-auth/default.nix @@ -0,0 +1,44 @@ +{ lib +, buildPythonPackage +, fetchPypi +, google-auth +, keyring +, pluggy +, requests +, setuptools-scm +, toml +}: + +buildPythonPackage rec { + pname = "keyrings.google-artifactregistry-auth"; + version = "1.0.0"; + + src = fetchPypi { + inherit pname version; + sha256 = "sha256-gvoX5SP0A39Ke0VRlplETJF8gIP+QzK6xNReRxM8UnA="; + }; + + buildInputs = [ + setuptools-scm + toml + ]; + + propagatedBuildInputs = [ + google-auth + keyring + pluggy + requests + ]; + + pythonImportsCheck = [ + "keyrings.gauth" + ]; + + + meta = with lib; { + description = "Python package which allows you to configure keyring to interact with Python repositories stored in Artifact Registry"; + homepage = "https://pypi.org/project/keyrings.google-artifactregistry-auth"; + license = licenses.asl20; + maintainers = with maintainers; [ lovesegfault ]; + }; +} diff --git a/pkgs/development/python-modules/kubernetes/default.nix b/pkgs/development/python-modules/kubernetes/default.nix index 3df049c1cec..2342ec5bde4 100644 --- a/pkgs/development/python-modules/kubernetes/default.nix +++ b/pkgs/development/python-modules/kubernetes/default.nix @@ -1,4 +1,5 @@ { lib +, stdenv , buildPythonPackage , fetchFromGitHub , pythonOlder @@ -54,6 +55,11 @@ buildPythonPackage rec { pytestCheckHook ]; + disabledTests = lib.optionals (stdenv.isDarwin && stdenv.isAarch64) [ + # AssertionError: <class 'urllib3.poolmanager.ProxyManager'> != <class 'urllib3.poolmanager.Poolmanager'> + "test_rest_proxycare" + ]; + meta = with lib; { description = "Kubernetes python client"; homepage = "https://github.com/kubernetes-client/python"; diff --git a/pkgs/development/python-modules/limnoria/default.nix b/pkgs/development/python-modules/limnoria/default.nix index 0467790c297..27550c30dbf 100644 --- a/pkgs/development/python-modules/limnoria/default.nix +++ b/pkgs/development/python-modules/limnoria/default.nix @@ -15,14 +15,14 @@ buildPythonPackage rec { pname = "limnoria"; - version = "2022.2.3"; + version = "2022.3.17"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-Jc11hS+WrRnjgYOUpc+GdkRoNV/DUJhQK6rI2lUkEIA="; + hash = "sha256-sSZFbEDlkc+F0PIwvseVEBoQQZVTFypW2nvLmPDD4u0="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/mdformat/default.nix b/pkgs/development/python-modules/mdformat/default.nix index 1ab425ade55..23bef4bda40 100644 --- a/pkgs/development/python-modules/mdformat/default.nix +++ b/pkgs/development/python-modules/mdformat/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "mdformat"; - version = "0.7.13"; + version = "0.7.14"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "executablebooks"; repo = pname; rev = version; - sha256 = "sha256-9ssDe7Wjuwuq2j7xwRyLqKouqeIt6NCUbEXjPdu2VZ8="; + sha256 = "sha256-bImBW6r8g/4MQ9yNrBBhk7AGqKRXFyAew6HHEmqelxw="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/meilisearch/default.nix b/pkgs/development/python-modules/meilisearch/default.nix new file mode 100644 index 00000000000..9671c43df08 --- /dev/null +++ b/pkgs/development/python-modules/meilisearch/default.nix @@ -0,0 +1,39 @@ +{ lib +, buildPythonPackage +, fetchFromGitHub +, pythonOlder +, requests +}: + +buildPythonPackage rec { + pname = "meilisearch"; + version = "0.18.1"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = "meilisearch"; + repo = "meilisearch-python"; + rev = "v${version}"; + hash = "sha256-Rd2GmomNzW0+oI2QEGcPY4g8H+4FN7eLKY1ljcibsLw="; + }; + + propagatedBuildInputs = [ + requests + ]; + + pythonImportsCheck = [ + "meilisearch" + ]; + + # Tests spin up a local server and are not mocking the requests + doCheck = false; + + meta = with lib; { + description = "Client for the Meilisearch API"; + homepage = "https://github.com/meilisearch/meilisearch-python"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ fab ]; + }; +} diff --git a/pkgs/development/python-modules/meshtastic/default.nix b/pkgs/development/python-modules/meshtastic/default.nix index 9a7c834c0ef..1972ae0ff5d 100644 --- a/pkgs/development/python-modules/meshtastic/default.nix +++ b/pkgs/development/python-modules/meshtastic/default.nix @@ -18,7 +18,7 @@ buildPythonPackage rec { pname = "meshtastic"; - version = "1.2.90"; + version = "1.2.92"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -27,7 +27,7 @@ buildPythonPackage rec { owner = "meshtastic"; repo = "Meshtastic-python"; rev = version; - sha256 = "sha256-n/M1Q6YS3EkUcn45ffiTy0wuj9yKf6qBLLfD2XJkhHU="; + sha256 = "sha256-tK711Lewr5Zc6dy/cDe9UEnq9zOEvuJg4mZyO3zBLR0="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/moto/default.nix b/pkgs/development/python-modules/moto/default.nix index a998e7b74b4..1d9d0774379 100644 --- a/pkgs/development/python-modules/moto/default.nix +++ b/pkgs/development/python-modules/moto/default.nix @@ -264,6 +264,8 @@ buildPythonPackage rec { "test_state_machine_creation_fails_with_invalid_names" # needs graphql "test_get_schema_creation_status" + # only appears in aarch64 currently, but best to be safe + "test_state_machine_list_executions_with_filter" ]; meta = with lib; { diff --git a/pkgs/development/python-modules/myfitnesspal/default.nix b/pkgs/development/python-modules/myfitnesspal/default.nix index 567eeaf6969..10f5713754b 100644 --- a/pkgs/development/python-modules/myfitnesspal/default.nix +++ b/pkgs/development/python-modules/myfitnesspal/default.nix @@ -8,11 +8,11 @@ , measurement , python-dateutil , requests -, six , rich , pytestCheckHook , mock , nose +, pythonOlder }: # TODO: Define this package in "all-packages.nix" using "toPythonApplication". @@ -20,12 +20,14 @@ buildPythonPackage rec { pname = "myfitnesspal"; - version = "1.16.6"; + version = "1.17.0"; format = "setuptools"; + disabled = pythonOlder "3.7"; + src = fetchPypi { inherit pname version; - sha256 = "ac07369ede3ca4c6d673e02f2b9e0893b17d079f3085e36fdfdbdd1cba9f37db"; + sha256 = "sha256-UXFvKQtC44EvscYWXK7KI/do3U0wTWI3zKwvsRdzKrs="; }; propagatedBuildInputs = [ @@ -36,7 +38,6 @@ buildPythonPackage rec { measurement python-dateutil requests - six rich ]; diff --git a/pkgs/development/python-modules/nassl/default.nix b/pkgs/development/python-modules/nassl/default.nix index b9e19439251..3e159dfe7ce 100644 --- a/pkgs/development/python-modules/nassl/default.nix +++ b/pkgs/development/python-modules/nassl/default.nix @@ -9,6 +9,7 @@ , tls-parser , cacert , pytestCheckHook +, pythonAtLeast , pythonOlder }: @@ -50,9 +51,11 @@ let "enable-tls1_3" "no-async" ]; - patches = builtins.filter ( - p: (builtins.baseNameOf (toString p)) != "macos-yosemite-compat.patch" - ) oldAttrs.patches; + patches = builtins.filter + ( + p: (builtins.baseNameOf (toString p)) != "macos-yosemite-compat.patch" + ) + oldAttrs.patches; buildInputs = oldAttrs.buildInputs ++ [ zlibStatic cacert ]; meta = oldAttrs.meta // { knownVulnerabilities = [ @@ -76,9 +79,11 @@ let sha256 = "1zqb1rff1wikc62a7vj5qxd1k191m8qif5d05mwdxz2wnzywlg72"; }; configureFlags = oldAttrs.configureFlags ++ nasslOpensslFlagsCommon; - patches = builtins.filter ( - p: (builtins.baseNameOf (toString p)) == "darwin64-arm64.patch" - ) oldAttrs.patches; + patches = builtins.filter + ( + p: (builtins.baseNameOf (toString p)) == "darwin64-arm64.patch" + ) + oldAttrs.patches; buildInputs = oldAttrs.buildInputs ++ [ zlibStatic ]; # openssl_1_0_2 needs `withDocs = false` outputs = lib.remove "doc" oldAttrs.outputs; @@ -87,42 +92,54 @@ let in buildPythonPackage rec { pname = "nassl"; - version = "4.0.1"; + version = "4.0.2"; + format = "setuptools"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "nabla-c0d3"; repo = pname; rev = version; - hash = "sha256-QzO7ABh2weBO6NVFIj7kZpS8ashbDGompuvdKteJeUc="; + hash = "sha256-lLyHXLmBVvT+LgsKBU8DcUXd0qaLSrwvXxFnIB9CHcU="; }; - postPatch = let - legacyOpenSSLVersion = lib.replaceStrings ["."] ["_"] opensslLegacyStatic.version; - modernOpenSSLVersion = lib.replaceStrings ["."] ["_"] opensslStatic.version; - zlibVersion = zlibStatic.version; - in '' - mkdir -p deps/openssl-OpenSSL_${legacyOpenSSLVersion}/ - cp ${opensslLegacyStatic.out}/lib/libssl.a \ - ${opensslLegacyStatic.out}/lib/libcrypto.a \ - deps/openssl-OpenSSL_${legacyOpenSSLVersion}/ - ln -s ${opensslLegacyStatic.out.dev}/include deps/openssl-OpenSSL_${legacyOpenSSLVersion}/include - ln -s ${opensslLegacyStatic.bin}/bin deps/openssl-OpenSSL_${legacyOpenSSLVersion}/apps + postPatch = + let + legacyOpenSSLVersion = lib.replaceStrings [ "." ] [ "_" ] opensslLegacyStatic.version; + modernOpenSSLVersion = lib.replaceStrings [ "." ] [ "_" ] opensslStatic.version; + zlibVersion = zlibStatic.version; + in + '' + mkdir -p deps/openssl-OpenSSL_${legacyOpenSSLVersion}/ + cp ${opensslLegacyStatic.out}/lib/libssl.a \ + ${opensslLegacyStatic.out}/lib/libcrypto.a \ + deps/openssl-OpenSSL_${legacyOpenSSLVersion}/ + ln -s ${opensslLegacyStatic.out.dev}/include deps/openssl-OpenSSL_${legacyOpenSSLVersion}/include + ln -s ${opensslLegacyStatic.bin}/bin deps/openssl-OpenSSL_${legacyOpenSSLVersion}/apps - mkdir -p deps/openssl-OpenSSL_${modernOpenSSLVersion}/ - cp ${opensslStatic.out}/lib/libssl.a \ - ${opensslStatic.out}/lib/libcrypto.a \ - deps/openssl-OpenSSL_${modernOpenSSLVersion}/ - ln -s ${opensslStatic.out.dev}/include deps/openssl-OpenSSL_${modernOpenSSLVersion}/include - ln -s ${opensslStatic.bin}/bin deps/openssl-OpenSSL_${modernOpenSSLVersion}/apps + mkdir -p deps/openssl-OpenSSL_${modernOpenSSLVersion}/ + cp ${opensslStatic.out}/lib/libssl.a \ + ${opensslStatic.out}/lib/libcrypto.a \ + deps/openssl-OpenSSL_${modernOpenSSLVersion}/ + ln -s ${opensslStatic.out.dev}/include deps/openssl-OpenSSL_${modernOpenSSLVersion}/include + ln -s ${opensslStatic.bin}/bin deps/openssl-OpenSSL_${modernOpenSSLVersion}/apps - mkdir -p deps/zlib-${zlibVersion}/ - cp ${zlibStatic.out}/lib/libz.a deps/zlib-${zlibVersion}/ - ''; + mkdir -p deps/zlib-${zlibVersion}/ + cp ${zlibStatic.out}/lib/libz.a deps/zlib-${zlibVersion}/ + ''; - propagatedBuildInputs = [ tls-parser ]; + nativeBuildInputs = [ + invoke + ]; + + propagatedBuildInputs = [ + tls-parser + ]; - nativeBuildInputs = [ invoke ]; + checkInputs = [ + pytestCheckHook + ]; buildPhase = '' invoke build.nassl @@ -131,19 +148,23 @@ buildPythonPackage rec { doCheck = true; - pythonImportsCheck = [ "nassl" ]; - - checkInputs = [ pytestCheckHook ]; + pythonImportsCheck = [ + "nassl" + ]; disabledTests = [ "Online" + ] ++ lib.optionals (pythonAtLeast "3.10") [ + "test_write_bad" + "test_client_authentication_no_certificate_supplied" + "test_client_authentication_succeeds" ]; meta = with lib; { + description = "Low-level OpenSSL wrapper for Python"; homepage = "https://github.com/nabla-c0d3/nassl"; - description = "Low-level OpenSSL wrapper for Python 3.7+"; - platforms = with platforms; linux ++ darwin; license = licenses.agpl3Only; maintainers = with maintainers; [ veehaitch ]; + platforms = with platforms; linux ++ darwin; }; } diff --git a/pkgs/development/python-modules/neo4j-driver/default.nix b/pkgs/development/python-modules/neo4j-driver/default.nix index 6b81af0c294..63a2efafbd6 100644 --- a/pkgs/development/python-modules/neo4j-driver/default.nix +++ b/pkgs/development/python-modules/neo4j-driver/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "neo4j-driver"; - version = "4.4.1"; + version = "4.4.2"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "neo4j"; repo = "neo4j-python-driver"; rev = version; - sha256 = "sha256-aGOqD6mmd3dulQ/SdaDPDZhkCwXdYCucHw+CrkJf1M0="; + sha256 = "sha256-rYedmxQvT+RjVdbDckLv00J4YuEQtMuIc8Q5FGWr3Rw="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/ocrmypdf/default.nix b/pkgs/development/python-modules/ocrmypdf/default.nix index ed672b7d01c..a268f34cc71 100644 --- a/pkgs/development/python-modules/ocrmypdf/default.nix +++ b/pkgs/development/python-modules/ocrmypdf/default.nix @@ -27,7 +27,7 @@ buildPythonPackage rec { pname = "ocrmypdf"; - version = "13.4.0"; + version = "13.4.1"; src = fetchFromGitHub { owner = "jbarlow83"; @@ -39,7 +39,7 @@ buildPythonPackage rec { extraPostFetch = '' rm "$out/.git_archival.txt" ''; - sha256 = "sha256-LgHhF+vztXPCn71d87OMn0umLvps7We6vyjdRJZw+3E="; + sha256 = "sha256-gxgeEwm3cYNllcmRTZhdyIWWGKXTewyVW314k732swE="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/pbr/default.nix b/pkgs/development/python-modules/pbr/default.nix index 8775faa53c2..7a03226b4dd 100644 --- a/pkgs/development/python-modules/pbr/default.nix +++ b/pkgs/development/python-modules/pbr/default.nix @@ -7,11 +7,11 @@ buildPythonPackage rec { pname = "pbr"; - version = "5.8.0"; + version = "5.8.1"; src = fetchPypi { inherit pname version; - sha256 = "672d8ebee84921862110f23fcec2acea191ef58543d34dfe9ef3d9f13c31cddf"; + sha256 = "sha256-ZrxaNJEvQIuzklvyEjHLb1kgYme39j81A++GXBopLiU="; }; propagatedBuildInputs = [ setuptools ]; diff --git a/pkgs/development/python-modules/pbr/tests.nix b/pkgs/development/python-modules/pbr/tests.nix index b31334589f5..aacb726d6a1 100644 --- a/pkgs/development/python-modules/pbr/tests.nix +++ b/pkgs/development/python-modules/pbr/tests.nix @@ -1,8 +1,8 @@ { buildPythonPackage +, build , git , gnupg , pbr -, mock , sphinx , stestr , testresources @@ -27,9 +27,9 @@ buildPythonPackage rec { checkInputs = [ pbr + build git gnupg - mock sphinx stestr testresources diff --git a/pkgs/development/python-modules/pdfminer_six/default.nix b/pkgs/development/python-modules/pdfminer_six/default.nix index 725fb9ab9f9..6d2b0adcf41 100644 --- a/pkgs/development/python-modules/pdfminer_six/default.nix +++ b/pkgs/development/python-modules/pdfminer_six/default.nix @@ -1,8 +1,8 @@ -{ lib, buildPythonPackage, fetchFromGitHub, isPy3k, cryptography, chardet, nose, sortedcontainers }: +{ lib, buildPythonPackage, fetchFromGitHub, isPy3k, cryptography, chardet, pytestCheckHook }: buildPythonPackage rec { pname = "pdfminer_six"; - version = "20201018"; + version = "20220319"; disabled = !isPy3k; @@ -10,10 +10,10 @@ buildPythonPackage rec { owner = "pdfminer"; repo = "pdfminer.six"; rev = version; - sha256 = "1a2fxxnnjqbx344znpvx7cnv1881dk6585ibw01inhfq3w6yj2lr"; + sha256 = "sha256-sjO7jmHSe4EDmJ1rfiXx+lsHxc+DfKeMet37Nbg03WQ="; }; - propagatedBuildInputs = [ chardet cryptography sortedcontainers ]; + propagatedBuildInputs = [ chardet cryptography ]; postInstall = '' for file in $out/bin/*.py; do @@ -21,10 +21,7 @@ buildPythonPackage rec { done ''; - checkInputs = [ nose ]; - checkPhase = '' - nosetests - ''; + checkInputs = [ pytestCheckHook ]; meta = with lib; { description = "PDF parser and analyzer"; diff --git a/pkgs/development/python-modules/pex/default.nix b/pkgs/development/python-modules/pex/default.nix index 4a03d60f1ee..ee356f86500 100644 --- a/pkgs/development/python-modules/pex/default.nix +++ b/pkgs/development/python-modules/pex/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "pex"; - version = "2.1.71"; + version = "2.1.72"; format = "flit"; src = fetchPypi { inherit pname version; - sha256 = "sha256-jJ7J4upDL1X1Eut1kUWdJu3Ih2mheNFt0wI+QTZMKow="; + sha256 = "sha256-0hhnBkbgt4bSlqjvYKX2Mhty/T1vBGm91HhKmyvVzmA="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pillow/default.nix b/pkgs/development/python-modules/pillow/default.nix index c1df3ce2751..8aa1ad1f4c4 100644 --- a/pkgs/development/python-modules/pillow/default.nix +++ b/pkgs/development/python-modules/pillow/default.nix @@ -7,13 +7,13 @@ import ./generic.nix (rec { pname = "Pillow"; - version = "9.0.0"; + version = "9.0.1"; disabled = !isPy3k; src = fetchPypi { inherit pname version; - sha256 = "0gjry0yqryd2678sm47jhdnbghzxn5wk8pgyaqwr4qi7x5ijjvpf"; + sha256 = "bIvII4p9/a96dfXsWmY/QXP4w2flo5+H5yBJXh7tdfo="; }; passthru.tests = { diff --git a/pkgs/development/python-modules/platformdirs/default.nix b/pkgs/development/python-modules/platformdirs/default.nix index f2e86599148..2be8928f630 100644 --- a/pkgs/development/python-modules/platformdirs/default.nix +++ b/pkgs/development/python-modules/platformdirs/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "platformdirs"; - version = "2.4.1"; + version = "2.5.0"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = pname; repo = pname; rev = version; - sha256 = "sha256-Ce1dwE2g/7o91NPkmlM0uv0eMB7WzFCExV/8ZCAn22Y="; + sha256 = "sha256-fppwtY8VX8IQ96H930xItO7mS8LlxxHgBcKlwIL5P2E="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/plexapi/default.nix b/pkgs/development/python-modules/plexapi/default.nix index 02831000e88..29532a23b0c 100644 --- a/pkgs/development/python-modules/plexapi/default.nix +++ b/pkgs/development/python-modules/plexapi/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "plexapi"; - version = "4.10.0"; + version = "4.10.1"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "pkkid"; repo = "python-plexapi"; rev = version; - sha256 = "sha256-paj1QFSHQw7MfOor1yYwb2vkF9b5RPj6R6dRstK24gA="; + sha256 = "sha256-0j3uf3wSDFSyDGo3oRi99KNKfhuGP2puSi0KgVjsXnQ="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/protonvpn-nm-lib/default.nix b/pkgs/development/python-modules/protonvpn-nm-lib/default.nix index 6680b19908e..9f12f220cfe 100644 --- a/pkgs/development/python-modules/protonvpn-nm-lib/default.nix +++ b/pkgs/development/python-modules/protonvpn-nm-lib/default.nix @@ -13,14 +13,14 @@ buildPythonPackage rec { pname = "protonvpn-nm-lib"; - version = "3.7.0"; + version = "3.8.0"; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "ProtonVPN"; repo = pname; rev = version; - sha256 = "sha256-RZ10p/Lg9GQj0CohW2v+THch5EaD236rEHETGjNStdY="; + sha256 = "sha256-fAaP9c66LcbZgezadGPUt400YRnrnFoBvpzlc1zxuc4="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/proxmoxer/default.nix b/pkgs/development/python-modules/proxmoxer/default.nix index 125984554a0..33b233bd609 100644 --- a/pkgs/development/python-modules/proxmoxer/default.nix +++ b/pkgs/development/python-modules/proxmoxer/default.nix @@ -11,14 +11,14 @@ buildPythonPackage rec { pname = "proxmoxer"; - version = "1.2.0"; + version = "1.3.0"; disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = pname; repo = pname; rev = version; - sha256 = "sha256-ElHocXrazwK+b5vdjYSJAYB4ajs2n+V8koj4QKkdDMQ="; + sha256 = "sha256-3EpId20WVVjXA/wxwy1peyHPcXdiT3fprABkcNBpZtE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyaussiebb/default.nix b/pkgs/development/python-modules/pyaussiebb/default.nix index 63edd6e60f8..0a88f6b0743 100644 --- a/pkgs/development/python-modules/pyaussiebb/default.nix +++ b/pkgs/development/python-modules/pyaussiebb/default.nix @@ -3,6 +3,7 @@ , buildPythonPackage , fetchFromGitHub , loguru +, pydantic , poetry-core , pythonOlder , requests @@ -10,7 +11,7 @@ buildPythonPackage rec { pname = "pyaussiebb"; - version = "0.0.11"; + version = "0.0.13"; format = "pyproject"; disabled = pythonOlder "3.9"; @@ -19,7 +20,7 @@ buildPythonPackage rec { owner = "yaleman"; repo = "aussiebb"; rev = "v${version}"; - hash = "sha256-aL+n2ut7n6UUyymMEHoFMhRvK9iFRRunYE9ZirKFXhc="; + hash = "sha256-8DX7GwSnpiqUO20a6oLMMTkpTUxWTb8LMD4Uk0lyAOY="; }; nativeBuildInputs = [ @@ -30,6 +31,7 @@ buildPythonPackage rec { aiohttp requests loguru + pydantic ]; postPatch = '' diff --git a/pkgs/development/python-modules/pycep-parser/default.nix b/pkgs/development/python-modules/pycep-parser/default.nix index f286e6b45bd..d76f72630a6 100644 --- a/pkgs/development/python-modules/pycep-parser/default.nix +++ b/pkgs/development/python-modules/pycep-parser/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "pycep-parser"; - version = "0.3.1"; + version = "0.3.2"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "gruebel"; repo = "pycep"; rev = version; - hash = "sha256-S4jBqMgyreWrEp1SuR8J5RVFc+i1O0xbfgux1UvFP5k="; + hash = "sha256-ud26xJQWdu7wtv75/K16HSSw0MvaSr3H1hDZBPjSzYE="; }; nativeBuildInputs = [ @@ -41,7 +41,7 @@ buildPythonPackage rec { postPatch = '' substituteInPlace pyproject.toml \ - --replace 'version = "0.3.1-alpha.1"' 'version = "${version}"' \ + --replace 'version = "0.3.2-alpha.4"' 'version = "${version}"' \ --replace 'regex = "^2022.3.2"' 'regex = "*"' ''; diff --git a/pkgs/development/python-modules/pyclip/default.nix b/pkgs/development/python-modules/pyclip/default.nix index ac79eb8293f..7d317120ed8 100644 --- a/pkgs/development/python-modules/pyclip/default.nix +++ b/pkgs/development/python-modules/pyclip/default.nix @@ -3,19 +3,23 @@ , fetchFromGitHub , buildPythonPackage , pytest +, pythonOlder , xclip , xvfb-run }: buildPythonPackage rec { pname = "pyclip"; - version = "0.5.4"; + version = "0.6.0"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "spyoungtech"; repo = pname; rev = "v${version}"; - sha256 = "19ff9cgnfx03mbmy5zpbdi986ppx38a5jf97vkqnic4g5sd1qyrn"; + hash = "sha256-NCWmCp4VGwwvubqN8FUUJ0kcZbXjOEyB6+BfGky1Kj4="; }; postPatch = '' @@ -23,7 +27,12 @@ buildPythonPackage rec { --replace docs/README.md README.md ''; - checkInputs = [ pytest ] ++ lib.optionals stdenv.isLinux [ xclip xvfb-run ]; + checkInputs = [ + pytest + ] ++ lib.optionals stdenv.isLinux [ + xclip + xvfb-run + ]; checkPhase = '' runHook preCheck diff --git a/pkgs/development/python-modules/pycryptodome/default.nix b/pkgs/development/python-modules/pycryptodome/default.nix index 44e7ed0ad4a..e3e4e6c3a03 100644 --- a/pkgs/development/python-modules/pycryptodome/default.nix +++ b/pkgs/development/python-modules/pycryptodome/default.nix @@ -6,13 +6,12 @@ buildPythonPackage rec { pname = "pycryptodome"; - version = "3.12.0"; + version = "3.14.1"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-Esc0OuxaOz31xHJlKBsSthHybsk2e2EpGZ1n2lS3aME="; - extension = "zip"; + hash = "sha256-4E5Ap/jBZpGVU2o3l53YfaLDLb3HPW/jXwB3sMF8gDs="; }; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/pycryptodomex/default.nix b/pkgs/development/python-modules/pycryptodomex/default.nix index c9f622d6c69..934c021ed90 100644 --- a/pkgs/development/python-modules/pycryptodomex/default.nix +++ b/pkgs/development/python-modules/pycryptodomex/default.nix @@ -6,13 +6,12 @@ buildPythonPackage rec { pname = "pycryptodomex"; - version = "3.12.0"; + version = "3.14.1"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-ki6drAFm5GF+XHmA0s/2kSputctcE+fs4iJDhlC9f2Y="; - extension = "zip"; + hash = "sha256-LOdu0Agf1qyMdO3HW50U7KIGQXOveYQ8JPpiVzJjwfI="; }; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/pygmt/default.nix b/pkgs/development/python-modules/pygmt/default.nix index 6f06065457e..f7728cfa28d 100644 --- a/pkgs/development/python-modules/pygmt/default.nix +++ b/pkgs/development/python-modules/pygmt/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "pygmt"; - version = "0.5.0"; + version = "0.6.0"; disabled = pythonOlder "3.6"; @@ -25,7 +25,7 @@ buildPythonPackage rec { owner = "GenericMappingTools"; repo = "pygmt"; rev = "v${version}"; - sha256 = "1mazljxwh162df971cvv7cwnqr300r17qfs7k09s6yd6hajyhz49"; + sha256 = "sha256-QzqQKnANReSHIsDbiKSZ1ZgMgbj3NAfq4bmRQktnRjQ="; }; postPatch = '' diff --git a/pkgs/development/python-modules/pyinfra/default.nix b/pkgs/development/python-modules/pyinfra/default.nix new file mode 100644 index 00000000000..ce489127946 --- /dev/null +++ b/pkgs/development/python-modules/pyinfra/default.nix @@ -0,0 +1,60 @@ +{ lib +, buildPythonPackage +, fetchPypi +, pythonOlder +, gevent +, click +, colorama +, configparser +, distro +, jinja2 +, paramiko +, python-dateutil +, pywinrm +, setuptools +, six +}: + +buildPythonPackage rec { + pname = "pyinfra"; + version = "1.7"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; + + src = fetchPypi { + inherit pname version; + sha256 = "sha256-r+7ka3WKE6uHP//p1N71hgTGit7Eo3x9INpbKPYbFMI="; + }; + + propagatedBuildInputs = [ + click + colorama + configparser + distro + gevent + jinja2 + paramiko + python-dateutil + pywinrm + setuptools + six + ]; + + doCheck = false; + + pythonImportsCheck = [ + "pyinfra" + ]; + + meta = with lib; { + description = "Python-based infrastructure automation"; + longDescription = '' + pyinfra automates/provisions/manages/deploys infrastructure. It can be used for + ad-hoc command execution, service deployment, configuration management and more. + ''; + homepage = "https://github.com/Fizzadar/pyinfra"; + maintainers = with maintainers; [ totoroot ]; + license = licenses.mit; + }; +} diff --git a/pkgs/development/python-modules/pykrakenapi/default.nix b/pkgs/development/python-modules/pykrakenapi/default.nix index 41efa9a54d2..a064390b1ce 100644 --- a/pkgs/development/python-modules/pykrakenapi/default.nix +++ b/pkgs/development/python-modules/pykrakenapi/default.nix @@ -7,13 +7,13 @@ buildPythonPackage rec { pname = "pykrakenapi"; - version = "0.2.4"; + version = "0.3.0"; src = fetchFromGitHub { owner = "dominiktraxl"; repo = "pykrakenapi"; rev = "v${version}"; - hash = "sha256-i2r6t+JcL6INI8Y26gvVvNjv6XxMj4G+pF9Xf/hsx1A="; + hash = "sha256-ZhP4TEWFEGIqI/nk2It1IVFKrX4HKP+dWxu+gLJNIeg="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pymavlink/default.nix b/pkgs/development/python-modules/pymavlink/default.nix index 8bf43a44543..361f8bff615 100644 --- a/pkgs/development/python-modules/pymavlink/default.nix +++ b/pkgs/development/python-modules/pymavlink/default.nix @@ -2,11 +2,11 @@ buildPythonPackage rec { pname = "pymavlink"; - version = "2.4.27"; + version = "2.4.29"; src = fetchPypi { inherit pname version; - sha256 = "sha256-DzW1jB7L7sD9WAhk/3/0UD8PW7Nw/bHTI527NmMV6CY="; + sha256 = "sha256-0k6DKkb/Izk15JKrSOC0u5wL3vT4x2CelZt112vc/p0="; }; propagatedBuildInputs = [ future lxml ]; diff --git a/pkgs/development/python-modules/pyopenssl/default.nix b/pkgs/development/python-modules/pyopenssl/default.nix index 16bfddc8340..e4655082af9 100644 --- a/pkgs/development/python-modules/pyopenssl/default.nix +++ b/pkgs/development/python-modules/pyopenssl/default.nix @@ -6,17 +6,50 @@ , cryptography , pyasn1 , idna -, pytest +, pytestCheckHook , pretend , flaky , glibcLocales , six }: -let - # https://github.com/pyca/pyopenssl/issues/791 - # These tests, we disable in the case that libressl is passed in as openssl. - failingLibresslTests = [ +buildPythonPackage rec { + pname = "pyopenssl"; + version = "22.0.0"; + + src = fetchPypi { + pname = "pyOpenSSL"; + inherit version; + sha256 = "sha256-ZgsbFCWqxKG+odlBaKhdmfCzFEyGndQ5DSdinQCH8b8="; + }; + + outputs = [ "out" "dev" ]; + + # Seems to fail unpredictably on Darwin. See https://hydra.nixos.org/build/49877419/nixlog/1 + # for one example, but I've also seen ContextTests.test_set_verify_callback_exception fail. + doCheck = !stdenv.isDarwin; + + nativeBuildInputs = [ openssl ]; + propagatedBuildInputs = [ cryptography pyasn1 idna six ]; + + checkInputs = [ pytestCheckHook pretend flaky glibcLocales ]; + + preCheck = '' + export LANG="en_US.UTF-8" + ''; + + disabledTests = [ + # https://github.com/pyca/pyopenssl/issues/692 + # These tests, we disable always. + "test_set_default_verify_paths" + "test_fallback_default_verify_paths" + # https://github.com/pyca/pyopenssl/issues/768 + "test_wantWriteError" + # https://github.com/pyca/pyopenssl/issues/1043 + "test_alpn_call_failure" + ] ++ lib.optionals (lib.hasPrefix "libressl" openssl.meta.name) [ + # https://github.com/pyca/pyopenssl/issues/791 + # These tests, we disable in the case that libressl is passed in as openssl. "test_op_no_compression" "test_npn_advertise_error" "test_npn_select_error" @@ -29,66 +62,21 @@ let "test_verify_with_revoked" "test_set_notAfter" "test_set_notBefore" - ]; - - # these tests are extremely tightly wed to the exact output of the openssl cli tool, - # including exact punctuation. - failingOpenSSL_1_1Tests = [ + ] ++ lib.optionals (lib.versionAtLeast (lib.getVersion openssl.name) "1.1") [ + # these tests are extremely tightly wed to the exact output of the openssl cli tool, including exact punctuation. "test_dump_certificate" "test_dump_privatekey_text" "test_dump_certificate_request" "test_export_text" - ]; - - disabledTests = [ - # https://github.com/pyca/pyopenssl/issues/692 - # These tests, we disable always. - "test_set_default_verify_paths" - "test_fallback_default_verify_paths" - # https://github.com/pyca/pyopenssl/issues/768 - "test_wantWriteError" - # https://github.com/pyca/pyopenssl/issues/1043 - "test_alpn_call_failure" - ] ++ ( - lib.optionals (lib.hasPrefix "libressl" openssl.meta.name) failingLibresslTests - ) ++ ( - lib.optionals (lib.versionAtLeast (lib.getVersion openssl.name) "1.1") failingOpenSSL_1_1Tests - ) ++ ( + ] ++ lib.optionals stdenv.is32bit [ # https://github.com/pyca/pyopenssl/issues/974 - lib.optionals stdenv.is32bit [ "test_verify_with_time" ] - ); - - # Compose the final string expression, including the "-k" and the single quotes. - testExpression = lib.optionalString (disabledTests != []) - "-k 'not ${lib.concatStringsSep " and not " disabledTests}'"; - -in - -buildPythonPackage rec { - pname = "pyopenssl"; - version = "21.0.0"; + "test_verify_with_time" + ]; - src = fetchPypi { - pname = "pyOpenSSL"; - inherit version; - sha256 = "5e2d8c5e46d0d865ae933bef5230090bdaf5506281e9eec60fa250ee80600cb3"; + meta = with lib; { + description = "Python wrapper around the OpenSSL library"; + homepage = "https://github.com/pyca/pyopenssl"; + license = licenses.asl20; + maintainers = with maintainers; [ SuperSandro2000 ]; }; - - outputs = [ "out" "dev" ]; - - checkPhase = '' - runHook preCheck - export LANG="en_US.UTF-8" - py.test tests ${testExpression} - runHook postCheck - ''; - - # Seems to fail unpredictably on Darwin. See https://hydra.nixos.org/build/49877419/nixlog/1 - # for one example, but I've also seen ContextTests.test_set_verify_callback_exception fail. - doCheck = !stdenv.isDarwin; - - nativeBuildInputs = [ openssl ]; - propagatedBuildInputs = [ cryptography pyasn1 idna six ]; - - checkInputs = [ pytest pretend flaky glibcLocales ]; } diff --git a/pkgs/development/python-modules/pypandoc/default.nix b/pkgs/development/python-modules/pypandoc/default.nix index cd7a322a2ae..d2ff1aab1a4 100644 --- a/pkgs/development/python-modules/pypandoc/default.nix +++ b/pkgs/development/python-modules/pypandoc/default.nix @@ -4,11 +4,11 @@ buildPythonPackage rec { pname = "pypandoc"; - version = "1.7.2"; + version = "1.7.3"; src = fetchPypi { inherit pname version; - sha256 = "1wk8jxnysb7sa55zhxx5brylv00ivamqbk1b4lbzi58ziij08p03"; + sha256 = "sha256-Tv0vqKN9AAXdfQRMt/QuqeFB3wNTh1DsWu0XNZukTUc="; }; patches = [ diff --git a/pkgs/development/python-modules/pysaml2/default.nix b/pkgs/development/python-modules/pysaml2/default.nix index e658ca40be7..1c6d9b45c56 100644 --- a/pkgs/development/python-modules/pysaml2/default.nix +++ b/pkgs/development/python-modules/pysaml2/default.nix @@ -22,7 +22,7 @@ buildPythonPackage rec { pname = "pysaml2"; - version = "7.1.1"; + version = "7.1.2"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -31,7 +31,7 @@ buildPythonPackage rec { owner = "IdentityPython"; repo = pname; rev = "v${version}"; - sha256 = "sha256-uRfcn3nCK+tx6ol6ZFarOSrDOh0cfC9gZXBZ7EICQzw="; + sha256 = "sha256-nyQcQ1OO9PuuQROg+km2vIRF1sZ22MZhiHpmVXWl+is="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pysigma-backend-splunk/default.nix b/pkgs/development/python-modules/pysigma-backend-splunk/default.nix index f3b122b4eca..97d5bd84f66 100644 --- a/pkgs/development/python-modules/pysigma-backend-splunk/default.nix +++ b/pkgs/development/python-modules/pysigma-backend-splunk/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "pysigma-backend-splunk"; - version = "0.1.1"; + version = "0.1.2"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "SigmaHQ"; repo = "pySigma-backend-splunk"; rev = "v${version}"; - hash = "sha256-AGT+7BKtINe2ukmomYyoUa5PHYAH1N0tUTtbyjMD+kw="; + hash = "sha256-jKvGBUO55DtF6bpgEL82XB5Ba+kmqJsCqUdzftcpSJ0="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pysigma-pipeline-crowdstrike/default.nix b/pkgs/development/python-modules/pysigma-pipeline-crowdstrike/default.nix index 22f589d3b14..2d2aadb9eae 100644 --- a/pkgs/development/python-modules/pysigma-pipeline-crowdstrike/default.nix +++ b/pkgs/development/python-modules/pysigma-pipeline-crowdstrike/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "pysigma-pipeline-crowdstrike"; - version = "0.1.3"; + version = "0.1.4"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "SigmaHQ"; repo = "pySigma-pipeline-crowdstrike"; rev = "v${version}"; - hash = "sha256-JNJHKydMzKreN+6liLlGMT1CFBUr/IX8Ah+exddKR3g="; + hash = "sha256-Riu2u1IouS1BMtXauXrNMIl06TU11pHdC0jjlOiR71s="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pysigma-pipeline-sysmon/default.nix b/pkgs/development/python-modules/pysigma-pipeline-sysmon/default.nix index e784ac1eca1..02a12f93f7b 100644 --- a/pkgs/development/python-modules/pysigma-pipeline-sysmon/default.nix +++ b/pkgs/development/python-modules/pysigma-pipeline-sysmon/default.nix @@ -9,7 +9,7 @@ buildPythonPackage rec { pname = "pysigma-pipeline-sysmon"; - version = "0.1.1"; + version = "0.1.2"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -18,7 +18,7 @@ buildPythonPackage rec { owner = "SigmaHQ"; repo = "pySigma-pipeline-sysmon"; rev = "v${version}"; - hash = "sha256-BBJt2SAbnPEzIwJ+tXW4NmA4Nrb/glIaPlnmYHLoMD0="; + hash = "sha256-Y9X9/ynrfs4gVTLl7pOvK3TH2Eh2vNF1S6Cnt3tByJM="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/pysigma/default.nix b/pkgs/development/python-modules/pysigma/default.nix index 39ab5c9918b..89bea0d0dc9 100644 --- a/pkgs/development/python-modules/pysigma/default.nix +++ b/pkgs/development/python-modules/pysigma/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "pysigma"; - version = "0.3.2"; + version = "0.4.1"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -20,7 +20,7 @@ buildPythonPackage rec { owner = "SigmaHQ"; repo = "pySigma"; rev = "v${version}"; - hash = "sha256-V/E2rZqVrk0kIvk+hPhNcAifhMM/rN3mk3pB+CGd43w="; + hash = "sha256-egyzeniid2PZZQ6hsd44W+YURI8uGaXvDMuhNIXUqO0="; }; nativeBuildInputs = [ @@ -36,21 +36,9 @@ buildPythonPackage rec { pytestCheckHook ]; - patches = [ - # Switch to poetry-core, https://github.com/SigmaHQ/pySigma/pull/31 - (fetchpatch { - name = "switch-to-poetry-core.patch"; - url = "https://github.com/SigmaHQ/pySigma/commit/b7a852d18852007da90c2ec35bff347c97b36f07.patch"; - sha256 = "sha256-zgg8Bsc37W2uuQluFpIZT4jHCQaitY2ZgS93Wk6Hxt0="; - }) - ]; - postPatch = '' - # https://github.com/SigmaHQ/pySigma/issues/32 - # https://github.com/SigmaHQ/pySigma/issues/33 substituteInPlace pyproject.toml \ - --replace 'pyparsing = "^2.4.7"' 'pyparsing = "*"' \ - --replace 'pyyaml = "^5.3.1"' 'pyyaml = "*"' + --replace 'pyparsing = "^3.0.7"' 'pyparsing = "*"' \ ''; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/pytesseract/default.nix b/pkgs/development/python-modules/pytesseract/default.nix index 6fcb9f97d32..4aac6902ce3 100644 --- a/pkgs/development/python-modules/pytesseract/default.nix +++ b/pkgs/development/python-modules/pytesseract/default.nix @@ -1,12 +1,12 @@ -{ buildPythonPackage, fetchPypi, lib, pillow, tesseract, substituteAll }: +{ buildPythonPackage, fetchPypi, lib, pillow, tesseract, substituteAll, packaging }: buildPythonPackage rec { pname = "pytesseract"; - version = "0.3.8"; + version = "0.3.9"; src = fetchPypi { inherit pname version; - sha256 = "sha256-YUigHkN1dghi6PVupxjiK10TsoFFTfRuqNrJgHeT/Fo="; + sha256 = "sha256-fiuvx/SNG7cUQ85GM6VvXiGSWpjyIKNsM2KX7c0ZVtA="; }; patches = [ @@ -17,7 +17,7 @@ buildPythonPackage rec { ]; buildInputs = [ tesseract ]; - propagatedBuildInputs = [ pillow ]; + propagatedBuildInputs = [ pillow packaging ]; # the package doesn't have any tests. doCheck = false; diff --git a/pkgs/development/python-modules/pytest-aiohttp/default.nix b/pkgs/development/python-modules/pytest-aiohttp/default.nix index 4e45477c8ca..794bbce74e0 100644 --- a/pkgs/development/python-modules/pytest-aiohttp/default.nix +++ b/pkgs/development/python-modules/pytest-aiohttp/default.nix @@ -1,20 +1,45 @@ -{ lib, buildPythonPackage, fetchPypi, pytest, aiohttp }: +{ lib +, buildPythonPackage +, fetchPypi +, fetchpatch +, setuptools-scm +, aiohttp +, pytest +, pytest-asyncio +, pytestCheckHook +}: buildPythonPackage rec { pname = "pytest-aiohttp"; - version = "0.3.0"; + version = "1.0.3"; src = fetchPypi { inherit pname version; - sha256 = "0kx4mbs9bflycd8x9af0idcjhdgnzri3nw1qb0vpfyb3751qaaf9"; + hash = "sha256-DI/rSNyOuAhw4rFTrK9iu7zCB5d+vLdDZf/P4WrcnxU="; }; - buildInputs = [ pytest ]; + patches = [ + # https://github.com/aio-libs/pytest-aiohttp/pull/26 + (fetchpatch { + name = "fix-tests-with-pytest-asyncio-0.18.0.patch"; + url = "https://github.com/aio-libs/pytest-aiohttp/commit/97152c2dfdd368f799ec6bcb5fc315736a726f53.patch"; + hash = "sha256-g7MTyCKUHnufOfrbhVV58WtfbGt1uXx8F7U9U+EaXfg="; + }) + ]; - propagatedBuildInputs = [ aiohttp ]; + nativeBuildInputs = [ + setuptools-scm + ]; - # There are no tests - doCheck = false; + propagatedBuildInputs = [ + aiohttp + pytest + pytest-asyncio + ]; + + checkInputs = [ + pytestCheckHook + ]; meta = with lib; { homepage = "https://github.com/aio-libs/pytest-aiohttp/"; diff --git a/pkgs/development/python-modules/pytest-asyncio/default.nix b/pkgs/development/python-modules/pytest-asyncio/default.nix index 6401e1ce2c9..b8d3dffa3b0 100644 --- a/pkgs/development/python-modules/pytest-asyncio/default.nix +++ b/pkgs/development/python-modules/pytest-asyncio/default.nix @@ -11,16 +11,16 @@ buildPythonPackage rec { pname = "pytest-asyncio"; - version = "0.17.2"; + version = "0.18.0"; format = "setuptools"; - disabled = pythonOlder "3.6"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "pytest-dev"; repo = pname; rev = "v${version}"; - sha256 = "sha256-4wDXvO6pDK0dQLnyfJTTa+GXf9Qtsi6ywYDUIdhkgGo="; + hash = "sha256-PE66ogjfzj6cW3+UD5nZHSt6zg7b+j6Q4ACznE4j0j8="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; @@ -36,6 +36,7 @@ buildPythonPackage rec { checkInputs = [ flaky hypothesis + flaky pytestCheckHook ]; @@ -44,9 +45,9 @@ buildPythonPackage rec { ]; meta = with lib; { - description = "library for testing asyncio code with pytest"; + description = "Library for testing asyncio code with pytest"; homepage = "https://github.com/pytest-dev/pytest-asyncio"; license = licenses.asl20; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ dotlambda ]; }; } diff --git a/pkgs/development/python-modules/pytest-console-scripts/default.nix b/pkgs/development/python-modules/pytest-console-scripts/default.nix index 6bc6fb22b03..32ccd22c969 100644 --- a/pkgs/development/python-modules/pytest-console-scripts/default.nix +++ b/pkgs/development/python-modules/pytest-console-scripts/default.nix @@ -10,14 +10,14 @@ buildPythonPackage rec { pname = "pytest-console-scripts"; - version = "1.3"; + version = "1.3.1"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-w8rb9nz7MKHrHMHp5py23kTDpkhCbxub9j6F2XNX/H8="; + hash = "sha256-XGw9qunPn77Q5lUHISiThgAZPcACpc8bGHJIZEugKFc="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; diff --git a/pkgs/development/python-modules/pytest-json-report/default.nix b/pkgs/development/python-modules/pytest-json-report/default.nix index 2b89fe71592..95a0bcb325f 100644 --- a/pkgs/development/python-modules/pytest-json-report/default.nix +++ b/pkgs/development/python-modules/pytest-json-report/default.nix @@ -5,17 +5,21 @@ , pytest-metadata , pytest-xdist , pytestCheckHook +, pythonOlder }: buildPythonPackage rec { pname = "pytest-json-report"; - version = "1.4.1"; + version = "1.5.0"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "numirias"; repo = pname; rev = "v${version}"; - sha256 = "sha256-OS9ASUp9iJ12Ovr931RQU/DHEAXqbgcRMCBP4h+GAhk="; + hash = "sha256-hMB/atDuo7CjwhHFUOxVfgJ7Qp4AA9J428iv7hyQFcs="; }; buildInputs = [ diff --git a/pkgs/development/python-modules/pytest-mock/default.nix b/pkgs/development/python-modules/pytest-mock/default.nix index 7f07ed2b6dd..94db409be91 100644 --- a/pkgs/development/python-modules/pytest-mock/default.nix +++ b/pkgs/development/python-modules/pytest-mock/default.nix @@ -1,6 +1,7 @@ { lib , buildPythonPackage , fetchPypi +, pytest , pytest-asyncio , pytestCheckHook , setuptools-scm @@ -8,15 +9,19 @@ buildPythonPackage rec { pname = "pytest-mock"; - version = "3.6.1"; + version = "3.7.0"; src = fetchPypi { inherit pname version; - sha256 = "40217a058c52a63f1042f0784f62009e976ba824c418cced42e88d5f40ab0e62"; + hash = "sha256-URK9ksyfGG7pbhqS78hJaepJSTnDrq05xQ9CHEzGlTQ="; }; nativeBuildInputs = [ setuptools-scm ]; + propagatedBuildInputs = [ + pytest + ]; + checkInputs = [ pytest-asyncio pytestCheckHook @@ -34,6 +39,6 @@ buildPythonPackage rec { description = "Thin-wrapper around the mock package for easier use with pytest"; homepage = "https://github.com/pytest-dev/pytest-mock"; license = with licenses; [ mit ]; - maintainers = with maintainers; [ ]; + maintainers = with maintainers; [ dotlambda ]; }; } diff --git a/pkgs/development/python-modules/python-box/default.nix b/pkgs/development/python-modules/python-box/default.nix index 0edf2b69580..30666ef4706 100644 --- a/pkgs/development/python-modules/python-box/default.nix +++ b/pkgs/development/python-modules/python-box/default.nix @@ -11,14 +11,16 @@ buildPythonPackage rec { pname = "python-box"; - version = "5.4.1"; + version = "6.0.1"; + format = "setuptools"; + disabled = pythonOlder "3.6"; src = fetchFromGitHub { owner = "cdgriffith"; repo = "Box"; rev = version; - sha256 = "sha256-SkteajcWG7rBFMm6Xp6QCfkZfwthRituGL/RtICbtYk="; + hash = "sha256-kH8qHAFuYDXO5Dsl6BpTYCIqh0Xi8Rbwmia+y3sTn6Y="; }; propagatedBuildInputs = [ @@ -32,7 +34,9 @@ buildPythonPackage rec { pytestCheckHook ]; - pythonImportsCheck = [ "box" ]; + pythonImportsCheck = [ + "box" + ]; meta = with lib; { description = "Python dictionaries with advanced dot notation access"; diff --git a/pkgs/development/python-modules/python-crfsuite/default.nix b/pkgs/development/python-modules/python-crfsuite/default.nix index cd2adc48c6f..a357df95a43 100644 --- a/pkgs/development/python-modules/python-crfsuite/default.nix +++ b/pkgs/development/python-modules/python-crfsuite/default.nix @@ -2,6 +2,7 @@ , buildPythonPackage , fetchPypi , pytestCheckHook +, pythonAtLeast }: buildPythonPackage rec { @@ -32,5 +33,6 @@ buildPythonPackage rec { homepage = "https://github.com/scrapinghub/python-crfsuite"; license = licenses.mit; maintainers = teams.tts.members; + broken = pythonAtLeast "3.10"; # https://github.com/scrapinghub/python-crfsuite/issues/130 }; } diff --git a/pkgs/development/python-modules/python-http-client/default.nix b/pkgs/development/python-modules/python-http-client/default.nix index aa2c4d020e5..78a3b018c7e 100644 --- a/pkgs/development/python-modules/python-http-client/default.nix +++ b/pkgs/development/python-modules/python-http-client/default.nix @@ -8,7 +8,7 @@ buildPythonPackage rec { pname = "python_http_client"; - version = "3.3.6"; + version = "3.3.7"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "sendgrid"; repo = "python-http-client"; rev = version; - sha256 = "sha256-Xchf/jVkQ7SYOzI9f81iS/G72k//6wkl2bMvHprOP9Y="; + sha256 = "sha256-8Qs5Jw0LMV2UucLnlFKJQ2PUhYaQx6uJdIV/4gaPH3w="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/python-smarttub/default.nix b/pkgs/development/python-modules/python-smarttub/default.nix index 4f484a84540..b41ddf01a8e 100644 --- a/pkgs/development/python-modules/python-smarttub/default.nix +++ b/pkgs/development/python-modules/python-smarttub/default.nix @@ -13,7 +13,7 @@ buildPythonPackage rec { pname = "python-smarttub"; - version = "0.0.29"; + version = "0.0.30"; format = "setuptools"; disabled = pythonOlder "3.8"; @@ -22,7 +22,7 @@ buildPythonPackage rec { owner = "mdz"; repo = pname; rev = "v${version}"; - sha256 = "sha256-utUpNuemyS8XEVhfhLgOwTRkPFqCBXyK1s1LWemywmU="; + sha256 = "sha256-PzmE0j/sas1Dc/U022dS3krROm292xJlL37+EWPEs+g="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pyvex/default.nix b/pkgs/development/python-modules/pyvex/default.nix index 595b4c35737..e3a810be916 100644 --- a/pkgs/development/python-modules/pyvex/default.nix +++ b/pkgs/development/python-modules/pyvex/default.nix @@ -12,14 +12,14 @@ buildPythonPackage rec { pname = "pyvex"; - version = "9.1.11752"; + version = "9.1.12332"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - hash = "sha256-DI+Jc5MtDd2XXfjIDtPd8qt4/eQ/3nwbDUqWE2haUhM="; + hash = "sha256-e1lruHgppQ8mJbTx6xsUDSkLCYQISqM9c1vsjdQU4eI="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/pywlroots/default.nix b/pkgs/development/python-modules/pywlroots/default.nix index 7dc17cf74ec..b4f23f71d74 100644 --- a/pkgs/development/python-modules/pywlroots/default.nix +++ b/pkgs/development/python-modules/pywlroots/default.nix @@ -18,11 +18,11 @@ buildPythonPackage rec { pname = "pywlroots"; - version = "0.15.10"; + version = "0.15.11"; src = fetchPypi { inherit pname version; - sha256 = "VWfcDhMAuUkYObRiaXRfcB7dI75SM7zVwWWvnlrxV0k="; + sha256 = "sha256-L+59uf3/wqWnmWpqm8RAyIEarbj2Sdwf1Pbweh/z9C8="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/python-modules/pyxbe/default.nix b/pkgs/development/python-modules/pyxbe/default.nix index 4c101ccdc3f..43cc501d80e 100644 --- a/pkgs/development/python-modules/pyxbe/default.nix +++ b/pkgs/development/python-modules/pyxbe/default.nix @@ -2,17 +2,21 @@ , buildPythonPackage , fetchFromGitHub , pytestCheckHook +, pythonOlder }: buildPythonPackage rec { pname = "pyxbe"; - version = "unstable-2021-01-10"; + version = "0.0.4"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "mborgerson"; repo = pname; - rev = "a7ae1bb21b02a57783831eb080c1edbafaad1d5d"; - sha256 = "1cp9a5f41z8j7bzip6nhka8qnxs12v75cdf80sk2nzgf1k15wi2p"; + rev = "v${version}"; + hash = "sha256-mHUmSSy/ygteJhRX6AbgZJ+c5MZMZcgNRoTOfxhV+XQ="; }; checkInputs = [ @@ -25,7 +29,9 @@ buildPythonPackage rec { --replace "'xbefiles'" "'tests/xbefiles'" ''; - pythonImportsCheck = [ "xbe" ]; + pythonImportsCheck = [ + "xbe" + ]; meta = with lib; { description = "Library to work with XBE files"; diff --git a/pkgs/development/python-modules/pyyaml/default.nix b/pkgs/development/python-modules/pyyaml/default.nix index 2c0e893b9c5..10f78ab5e14 100644 --- a/pkgs/development/python-modules/pyyaml/default.nix +++ b/pkgs/development/python-modules/pyyaml/default.nix @@ -8,7 +8,7 @@ }: buildPythonPackage rec { - pname = "PyYAML"; + pname = "pyyaml"; version = "6.0"; disabled = pythonOlder "3.6"; diff --git a/pkgs/development/python-modules/qcengine/default.nix b/pkgs/development/python-modules/qcengine/default.nix index ea5325ea660..795b8460b5d 100644 --- a/pkgs/development/python-modules/qcengine/default.nix +++ b/pkgs/development/python-modules/qcengine/default.nix @@ -11,7 +11,7 @@ buildPythonPackage rec { pname = "qcengine"; - version = "0.22.0"; + version = "0.23.0"; checkInputs = [ pytestCheckHook ]; @@ -25,7 +25,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - sha256 = "685a08247b561ed1c7a7b42e68293f90b412e83556626304a3f826a15be51308"; + sha256 = "sha256-gDn0Nu6ALTr3KyZnYDSA6RE3S5JQj562FP2RI9U3Gxs="; }; doCheck = true; diff --git a/pkgs/development/python-modules/qiling/default.nix b/pkgs/development/python-modules/qiling/default.nix index 51c762c8107..72995432814 100644 --- a/pkgs/development/python-modules/qiling/default.nix +++ b/pkgs/development/python-modules/qiling/default.nix @@ -8,18 +8,22 @@ , multiprocess , pefile , pyelftools +, pythonOlder , python-registry +, pyyaml , unicorn }: buildPythonPackage rec { pname = "qiling"; - version = "1.4.1"; + version = "1.4.2"; format = "setuptools"; + disabled = pythonOlder "3.7"; + src = fetchPypi { inherit pname version; - sha256 = "e72dc5856cbda975f962ddf063063a32bd6c3b825f75e0795e94ba6840a7d45f"; + hash = "sha256-myUGzNP4bf90d2gY5ZlYbVlTG640dj/Qha8/aMydvuw="; }; propagatedBuildInputs = [ @@ -30,14 +34,10 @@ buildPythonPackage rec { pefile pyelftools python-registry + pyyaml unicorn ]; - postPatch = '' - substituteInPlace setup.py \ - --replace "pefile==2021.5.24" "pefile>=2021.5.24" - ''; - # Tests are broken (attempt to import a file that tells you not to import it, # amongst other things) doCheck = false; diff --git a/pkgs/development/python-modules/readme_renderer/default.nix b/pkgs/development/python-modules/readme_renderer/default.nix index b7709da9dca..122c4fdf665 100644 --- a/pkgs/development/python-modules/readme_renderer/default.nix +++ b/pkgs/development/python-modules/readme_renderer/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "readme-renderer"; - version = "33.0"; + version = "34.0"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -20,7 +20,7 @@ buildPythonPackage rec { src = fetchPypi { pname = "readme_renderer"; inherit version; - sha256 = "sha256-47U7yEvWrwVOTMH+NWfcGuGfVUE0IhBDo/jGdOIiCds="; + sha256 = "sha256-37TRfyFwbRRfdHPgthyiRbpY6BDPmyIJpII5Z3+C5bA="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/regex/default.nix b/pkgs/development/python-modules/regex/default.nix index b96c7ca8995..86e591eaf14 100644 --- a/pkgs/development/python-modules/regex/default.nix +++ b/pkgs/development/python-modules/regex/default.nix @@ -2,25 +2,28 @@ , buildPythonPackage , fetchPypi , python -, isPy27 +, pythonOlder }: buildPythonPackage rec { pname = "regex"; - version = "2021.11.10"; + version = "2022.1.18"; + format = "setuptools"; + + disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-80HuLfCZm/33qV5EgHXv/g2yEqWTh94acGkOSssD1MY="; + hash = "sha256-l/MtwDqAVKTEpatddh7Uhh6CiywgD+vU5GhXBppIORY="; }; - # Sources for different Python releases are located in same folder checkPhase = '' - rm -r ${if !isPy27 then "regex_2" else "regex_3"} ${python.interpreter} -m unittest ''; - pythonImportsCheck = [ "regex" ]; + pythonImportsCheck = [ + "regex" + ]; meta = with lib; { description = "Alternative regular expression module, to replace re"; diff --git a/pkgs/development/python-modules/renault-api/default.nix b/pkgs/development/python-modules/renault-api/default.nix index 2ddd65790fa..2312078c5fc 100644 --- a/pkgs/development/python-modules/renault-api/default.nix +++ b/pkgs/development/python-modules/renault-api/default.nix @@ -16,7 +16,7 @@ buildPythonPackage rec { pname = "renault-api"; - version = "0.1.9"; + version = "0.1.10"; format = "pyproject"; disabled = pythonOlder "3.7"; @@ -25,7 +25,7 @@ buildPythonPackage rec { owner = "hacf-fr"; repo = pname; rev = "v${version}"; - sha256 = "sha256-CZDxJ5vgk9I1cRDXoqcrUHu+buPWYVrEcHaRXcyts7I="; + sha256 = "sha256-PXycRRUrKIkU/MgQbW4BjvBhpEi6InY5jZHPw4Nyv2s="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/responses/default.nix b/pkgs/development/python-modules/responses/default.nix index 86e37419c72..95861bda181 100644 --- a/pkgs/development/python-modules/responses/default.nix +++ b/pkgs/development/python-modules/responses/default.nix @@ -5,25 +5,23 @@ , pytestCheckHook , pythonOlder , requests -, six , urllib3 }: buildPythonPackage rec { pname = "responses"; - version = "0.17.0"; + version = "0.18.0"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-7GdeCA0Gv40fteWmih5c0N9GsJx4IwMV9lCvXkA2vsc="; + hash = "sha256-OAytTBwdyULl6KjqrgtNTt9wj08BDbi3vPr60fzSVP8="; }; propagatedBuildInputs = [ requests - six urllib3 ]; diff --git a/pkgs/development/python-modules/ropper/default.nix b/pkgs/development/python-modules/ropper/default.nix index 1237fd09ea4..391e8d36139 100644 --- a/pkgs/development/python-modules/ropper/default.nix +++ b/pkgs/development/python-modules/ropper/default.nix @@ -1,12 +1,12 @@ { lib -, buildPythonApplication +, buildPythonPackage , fetchPypi , capstone , filebytes , pytest }: -buildPythonApplication rec { +buildPythonPackage rec { pname = "ropper"; version = "1.13.6"; diff --git a/pkgs/development/python-modules/ruamel-yaml/default.nix b/pkgs/development/python-modules/ruamel-yaml/default.nix index 79f21ba6aab..31d76d78ac7 100644 --- a/pkgs/development/python-modules/ruamel-yaml/default.nix +++ b/pkgs/development/python-modules/ruamel-yaml/default.nix @@ -8,12 +8,12 @@ buildPythonPackage rec { pname = "ruamel-yaml"; - version = "0.17.20"; + version = "0.17.21"; src = fetchPypi { pname = "ruamel.yaml"; inherit version; - sha256 = "sha256-S4ozwe+ytEOpP8qvz6TS5EX46MKcUo2fXNr7fMnkAEw="; + sha256 = "sha256-i3zml6LyEnUqNcGsQURx3BbEJMlXO+SSa1b/P10jt68="; }; # Tests use relative paths diff --git a/pkgs/development/python-modules/samsungtvws/default.nix b/pkgs/development/python-modules/samsungtvws/default.nix index b4bebb79a0f..bed661ce200 100644 --- a/pkgs/development/python-modules/samsungtvws/default.nix +++ b/pkgs/development/python-modules/samsungtvws/default.nix @@ -5,12 +5,12 @@ buildPythonPackage rec { pname = "samsungtvws"; - version = "2.3.0"; + version = "2.4.0"; disabled = isPy27; src = fetchPypi { inherit pname version; - sha256 = "sha256-2ly9lbnIHGHB55ml10jKE7dC5LdN1ToGW4GqfxTC5kI="; + sha256 = "sha256-LbNHaSbNCwoffox6B8kEUzxjkSJotB+P1bw3wbU7DZk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/sasmodels/default.nix b/pkgs/development/python-modules/sasmodels/default.nix index f7d0e62ff15..700fb05bc67 100644 --- a/pkgs/development/python-modules/sasmodels/default.nix +++ b/pkgs/development/python-modules/sasmodels/default.nix @@ -8,33 +8,53 @@ , docutils , pyopencl , opencl-headers +, pythonOlder }: buildPythonPackage rec { pname = "sasmodels"; - version = "1.0.5"; + version = "1.0.6"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "SasView"; repo = "sasmodels"; rev = "v${version}"; - sha256 = "19h30kcgpvg1qirzjm0vhgvp1yn60ivlglc8a8n2b4d9fp0acfyd"; + hash = "sha256-RVEPu07gp1ScciJQmjizyELcOD2WSjIlxunj5LnmXdw="; }; - buildInputs = [ opencl-headers ]; + buildInputs = [ + opencl-headers + ]; + + propagatedBuildInputs = [ + docutils + matplotlib + numpy + scipy + pyopencl + ]; + # Note: the 1.0.5 release should be compatible with pytest6, so this can # be set back to 'pytest' at that point - checkInputs = [ pytest ]; - propagatedBuildInputs = [ docutils matplotlib numpy scipy pyopencl ]; + checkInputs = [ + pytest + ]; checkPhase = '' HOME=$(mktemp -d) py.test -c ./pytest.ini ''; - meta = { + pythonImportsCheck = [ + "sasmodels" + ]; + + meta = with lib; { description = "Library of small angle scattering models"; - homepage = "http://sasview.org"; - license = lib.licenses.bsd3; - maintainers = with lib.maintainers; [ rprospero ]; + homepage = "https://github.com/SasView/sasmodels"; + license = licenses.bsd3; + maintainers = with maintainers; [ rprospero ]; }; } diff --git a/pkgs/development/python-modules/scikit-hep-testdata/default.nix b/pkgs/development/python-modules/scikit-hep-testdata/default.nix index d8240fd8333..803daeb2ab3 100644 --- a/pkgs/development/python-modules/scikit-hep-testdata/default.nix +++ b/pkgs/development/python-modules/scikit-hep-testdata/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "scikit-hep-testdata"; - version = "0.4.11"; + version = "0.4.12"; format = "pyproject"; # fetch from github as we want the data files @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "scikit-hep"; repo = pname; rev = "v${version}"; - sha256 = "18r5nk8d5y79ihzjkjm5l0hiw2sjgj87px7vwb0bxbs73f5v353b"; + sha256 = "sha256-ZnsOmsajW4dDv53I/Cuu97mPJywGiwFhNGpT1WRfxSw="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/scrapy/default.nix b/pkgs/development/python-modules/scrapy/default.nix index c26ec74ac31..073059aec62 100644 --- a/pkgs/development/python-modules/scrapy/default.nix +++ b/pkgs/development/python-modules/scrapy/default.nix @@ -22,6 +22,7 @@ , service-identity , sybil , testfixtures +, tldextract , twisted , w3lib , zope_interface @@ -29,13 +30,13 @@ buildPythonPackage rec { pname = "scrapy"; - version = "2.5.1"; + version = "2.6.1"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit version; pname = "Scrapy"; - sha256 = "13af6032476ab4256158220e530411290b3b934dd602bb6dacacbf6d16141f49"; + sha256 = "56fd55a59d0f329ce752892358abee5a6b50b4fc55a40420ea317dc617553827"; }; nativeBuildInputs = [ @@ -54,6 +55,7 @@ buildPythonPackage rec { pyopenssl queuelib service-identity + tldextract twisted w3lib zope_interface @@ -68,22 +70,6 @@ buildPythonPackage rec { testfixtures ]; - patches = [ - # Require setuptools, https://github.com/scrapy/scrapy/pull/5122 - (fetchpatch { - name = "add-setuptools.patch"; - url = "https://github.com/scrapy/scrapy/commit/4f500342c8ad4674b191e1fab0d1b2ac944d7d3e.patch"; - sha256 = "14030sfv1cf7dy4yww02b49mg39cfcg4bv7ys1iwycfqag3xcjda"; - }) - # Make Twisted[http2] installation optional, https://github.com/scrapy/scrapy/pull/5113 - (fetchpatch { - name = "remove-h2.patch"; - url = "https://github.com/scrapy/scrapy/commit/c5b1ee810167266fcd259f263dbfc0fe0204761a.patch"; - sha256 = "0sa39yx9my4nqww8a12bk9zagx7b56vwy7xpxm4xgjapjl6mcc0k"; - excludes = [ "tox.ini" ]; - }) - ]; - LC_ALL = "en_US.UTF-8"; preCheck = '' diff --git a/pkgs/development/python-modules/semantic-version/default.nix b/pkgs/development/python-modules/semantic-version/default.nix index e939142fd82..d3ca4459619 100644 --- a/pkgs/development/python-modules/semantic-version/default.nix +++ b/pkgs/development/python-modules/semantic-version/default.nix @@ -1,20 +1,35 @@ -{ lib, fetchPypi, buildPythonPackage }: +{ lib +, fetchPypi +, buildPythonPackage +, pythonOlder +, pytestCheckHook +}: buildPythonPackage rec { - pname = "semantic_version"; - version = "2.8.5"; + pname = "semantic-version"; + version = "2.9.0"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchPypi { - inherit pname version; - sha256 = "d2cb2de0558762934679b9a104e82eca7af448c9f4974d1f3eeccff651df8a54"; + pname = "semantic_version"; + inherit version; + sha256 = "sha256-q/VIc1U+Xgem/U1fZTt4H1rkEpekk2ZrWdzyFABqErI="; }; - # ModuleNotFoundError: No module named 'tests' - doCheck = false; + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "semantic_version" + ]; meta = with lib; { description = "A library implementing the 'SemVer' scheme"; - license = licenses.bsdOriginal; + homepage = "https://github.com/rbarrois/python-semanticversion/"; + license = licenses.bsd2; maintainers = with maintainers; [ layus makefu ]; }; } diff --git a/pkgs/development/python-modules/snitun/default.nix b/pkgs/development/python-modules/snitun/default.nix index d1645e1fbe7..1b7bd7341eb 100644 --- a/pkgs/development/python-modules/snitun/default.nix +++ b/pkgs/development/python-modules/snitun/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { owner = "NabuCasa"; repo = pname; rev = version; - sha256 = "sha256-Ehafb35H462Ffn6omGh/MDJKQX5qJJZeiIBO3n0IGlA="; + hash = "sha256-Ehafb35H462Ffn6omGh/MDJKQX5qJJZeiIBO3n0IGlA="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/soco/default.nix b/pkgs/development/python-modules/soco/default.nix index e79a38d8cf5..50a134df2d2 100644 --- a/pkgs/development/python-modules/soco/default.nix +++ b/pkgs/development/python-modules/soco/default.nix @@ -15,7 +15,7 @@ buildPythonPackage rec { pname = "soco"; - version = "0.26.4"; + version = "0.27.1"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -24,7 +24,7 @@ buildPythonPackage rec { owner = "SoCo"; repo = "SoCo"; rev = "v${version}"; - hash = "sha256-DoONq6Iqi8t47jtqggKYMHSNJAf/Kha3tszR6mYeB9Y="; + hash = "sha256-8U7wfxqen+hgK8j9ooPHCAKvd9kSZicToTyP7XzQFrg="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/sslyze/default.nix b/pkgs/development/python-modules/sslyze/default.nix index f76ba96a5b8..bc3e2c238c9 100644 --- a/pkgs/development/python-modules/sslyze/default.nix +++ b/pkgs/development/python-modules/sslyze/default.nix @@ -16,14 +16,14 @@ buildPythonPackage rec { pname = "sslyze"; - version = "5.0.2"; + version = "5.0.3"; disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "nabla-c0d3"; repo = pname; rev = version; - hash = "sha256-8xtnE5oFxH3wo2Smt65/xGDHxivexN6ggUpyUg42Cjk="; + hash = "sha256-d465WJIDsgNAPe8KW5v2KDSgzMH7OPLSiFfFH9n+jiA="; }; patchPhase = '' diff --git a/pkgs/development/python-modules/stack-data/default.nix b/pkgs/development/python-modules/stack-data/default.nix index cbbd3a878d7..eb9879a4bf0 100644 --- a/pkgs/development/python-modules/stack-data/default.nix +++ b/pkgs/development/python-modules/stack-data/default.nix @@ -1,5 +1,6 @@ { asttokens , buildPythonPackage +, cython , executing , fetchFromGitHub , git @@ -15,13 +16,13 @@ buildPythonPackage rec { pname = "stack-data"; - version = "0.1.0"; + version = "0.2.0"; src = fetchFromGitHub { owner = "alexmojaki"; repo = "stack_data"; rev = "v${version}"; - sha256 = "sha256-dRIRDMq0tc1QuBHvppPwJA5PVGHyVRhoBlX5BsdDzec="; + sha256 = "sha256-brXFrk1UU5hxCVeRvGK7wzRA0Hoj9fgqoxTIwInPrEc="; }; SETUPTOOLS_SCM_PRETEND_VERSION = version; @@ -39,6 +40,7 @@ buildPythonPackage rec { ]; checkInputs = [ + cython littleutils pygments pytestCheckHook diff --git a/pkgs/development/python-modules/stups-pierone/default.nix b/pkgs/development/python-modules/stups-pierone/default.nix index f627f0e7231..3df2a3e2895 100644 --- a/pkgs/development/python-modules/stups-pierone/default.nix +++ b/pkgs/development/python-modules/stups-pierone/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "stups-pierone"; - version = "1.1.50"; + version = "1.1.51"; format = "setuptools"; disabled = pythonOlder "3.7"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "zalando-stups"; repo = "pierone-cli"; rev = version; - hash = "sha256-YAoj+Ou0Q64QRN5R0CQSxQGP7xDQQNISS6VT5txV0sw="; + hash = "sha256-OypGYHfiFUfcUndylM2N2WfPnfXXJ4gvWypUbltYAYE="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/thinc/default.nix b/pkgs/development/python-modules/thinc/default.nix index 55bf72aec76..a25c8d23567 100644 --- a/pkgs/development/python-modules/thinc/default.nix +++ b/pkgs/development/python-modules/thinc/default.nix @@ -30,14 +30,14 @@ buildPythonPackage rec { pname = "thinc"; - version = "8.0.13"; + version = "8.0.15"; format = "setuptools"; disabled = pythonOlder "3.6"; src = fetchPypi { inherit pname version; - sha256 = "sha256-R2YqOuM9RFp3tup7dyREgFx7uomR8SLjUNr3Le3IFxo="; + sha256 = "sha256-LjFQINqFw3keGR+/N8SiQz9XzzIuJzgNoM1N6Z2WBTs="; }; postPatch = '' diff --git a/pkgs/development/python-modules/timetagger/default.nix b/pkgs/development/python-modules/timetagger/default.nix index 1da2887a12f..65b22f905ef 100644 --- a/pkgs/development/python-modules/timetagger/default.nix +++ b/pkgs/development/python-modules/timetagger/default.nix @@ -9,13 +9,13 @@ python3Packages.buildPythonPackage rec { pname = "timetagger"; - version = "22.2.3"; + version = "22.3.1"; src = fetchFromGitHub { owner = "almarklein"; repo = pname; rev = "v${version}"; - sha256 = "sha256-tQel+IVqP+MngAvFgr7Yh+XCSIPWpzCBXHOj9b0Os98="; + sha256 = "sha256-pHogDjqXuoQp5afSnPvMPaKoBtPE6u3kMi87SzY5yoU="; }; propagatedBuildInputs = with python3Packages; [ diff --git a/pkgs/development/python-modules/tls-parser/default.nix b/pkgs/development/python-modules/tls-parser/default.nix index ad35fe50128..a886e116e45 100644 --- a/pkgs/development/python-modules/tls-parser/default.nix +++ b/pkgs/development/python-modules/tls-parser/default.nix @@ -7,23 +7,29 @@ buildPythonPackage rec { pname = "tls-parser"; - version = "1.2.2"; + version = "2.0.0"; + format = "setuptools"; + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "nabla-c0d3"; repo = "tls_parser"; rev = version; - sha256 = "12qj3vg02r5a51w6gbgb1gcxicqc10lbbsdi57jkkfvbqiindbd0"; + hash = "sha256-A1lYRe1sHDoOFdF20DP+xRMcPBWzokIXFphIpaBmwBc="; }; - checkInputs = [ pytestCheckHook ]; + checkInputs = [ + pytestCheckHook + ]; - pythonImportsCheck = [ "tls_parser" ]; + pythonImportsCheck = [ + "tls_parser" + ]; meta = with lib; { - homepage = "https://github.com/nabla-c0d3/tls_parser"; description = "Small library to parse TLS records"; + homepage = "https://github.com/nabla-c0d3/tls_parser"; platforms = with platforms; linux ++ darwin; license = licenses.mit; maintainers = with maintainers; [ veehaitch ]; diff --git a/pkgs/development/python-modules/traitsui/default.nix b/pkgs/development/python-modules/traitsui/default.nix index d09a855bd32..dc42ba0972f 100644 --- a/pkgs/development/python-modules/traitsui/default.nix +++ b/pkgs/development/python-modules/traitsui/default.nix @@ -8,14 +8,14 @@ buildPythonPackage rec { pname = "traitsui"; - version = "7.3.0"; + version = "7.3.1"; format = "setuptools"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - hash = "sha256-ZkSz+PYColdgcC3IchuneM51lFBAk68UpIadI56GdPQ="; + hash = "sha256-lHStZ/NF2Wsya0AemgFAXICCyS+kO/R8CwOYGOWHrGk="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/trimesh/default.nix b/pkgs/development/python-modules/trimesh/default.nix index de28f70bca0..0323c965ecd 100644 --- a/pkgs/development/python-modules/trimesh/default.nix +++ b/pkgs/development/python-modules/trimesh/default.nix @@ -6,11 +6,11 @@ buildPythonPackage rec { pname = "trimesh"; - version = "3.10.2"; + version = "3.10.5"; src = fetchPypi { inherit pname version; - sha256 = "sha256-PcR84la6ZJjtpjg4WGVUkyZJqVT8Ge7vjk90X6gStAo="; + sha256 = "sha256-GtdxStdWtioRgf/Y2/broyYElqIJ2RxP3otgROw3epI="; }; propagatedBuildInputs = [ numpy ]; diff --git a/pkgs/development/python-modules/twentemilieu/default.nix b/pkgs/development/python-modules/twentemilieu/default.nix index 425b7eddfe9..382e90e14c8 100644 --- a/pkgs/development/python-modules/twentemilieu/default.nix +++ b/pkgs/development/python-modules/twentemilieu/default.nix @@ -12,7 +12,7 @@ buildPythonPackage rec { pname = "twentemilieu"; - version = "0.5.0"; + version = "0.6.0"; format = "pyproject"; disabled = pythonOlder "3.8"; @@ -21,7 +21,7 @@ buildPythonPackage rec { owner = "frenck"; repo = "python-twentemilieu"; rev = "v${version}"; - sha256 = "sha256-7HQ0+h8oiyY+TacQdX84K0r994rH0AMZAvZz8PUvQl0="; + sha256 = "sha256-UE7fhbSThXmMns1XfUUQqw0wn5/w/x+UncansIBiank="; }; postPatch = '' diff --git a/pkgs/development/python-modules/txtorcon/default.nix b/pkgs/development/python-modules/txtorcon/default.nix index 93c9c95a62e..c5fc7e1c6a4 100644 --- a/pkgs/development/python-modules/txtorcon/default.nix +++ b/pkgs/development/python-modules/txtorcon/default.nix @@ -4,7 +4,7 @@ buildPythonPackage rec { pname = "txtorcon"; - version = "21.1.0"; + version = "22.0.0"; checkInputs = [ pytest mock lsof GeoIP ]; propagatedBuildInputs = [ @@ -15,7 +15,7 @@ buildPythonPackage rec { src = fetchPypi { inherit pname version; - sha256 = "aebf0b9ec6c69a029f6b61fd534e785692e28fdcd2fd003ce3cc132b9393b7d6"; + sha256 = "sha256-iaG2XjKks2nWfmwWY4f7xGjMXQUidEjSOaXn6XGKoFM="; }; # Based on what txtorcon tox.ini will automatically test, allow back as far diff --git a/pkgs/development/python-modules/typed-ast/default.nix b/pkgs/development/python-modules/typed-ast/default.nix index c4977ab0829..87116017063 100644 --- a/pkgs/development/python-modules/typed-ast/default.nix +++ b/pkgs/development/python-modules/typed-ast/default.nix @@ -7,7 +7,7 @@ buildPythonPackage rec { pname = "typed-ast"; - version = "1.5.1"; + version = "1.5.2"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -16,7 +16,7 @@ buildPythonPackage rec { owner = "python"; repo = "typed_ast"; rev = version; - hash = "sha256-qfXMT+rSf/WcWHpkg4VZXZMYj/5IKQWAKRsxQ0TRzPU="; + hash = "sha256-Ul1FIS1a1f8l3tX+m8Bj/LsLQW1sXJv6XzEZ9zh8rfI="; }; checkInputs = [ diff --git a/pkgs/development/python-modules/typed-settings/default.nix b/pkgs/development/python-modules/typed-settings/default.nix index ea5092cb2ae..6e903b68407 100644 --- a/pkgs/development/python-modules/typed-settings/default.nix +++ b/pkgs/development/python-modules/typed-settings/default.nix @@ -12,13 +12,13 @@ buildPythonPackage rec { pname = "typed-settings"; - version = "0.11.1"; + version = "1.0.0"; format = "pyproject"; disabled = pythonOlder "3.7"; src = fetchPypi { inherit pname version; - sha256 = "sha256-gcyOeUyRAwU5s+XoQO/yM0tx7QHjDsBeyoe5HRZHtIs="; + sha256 = "sha256-c+iOb1F8+9IoRbwpMTdyDfOPW2ZEo4xDAlbzLAxgSfk="; }; nativeBuildInputs = [ diff --git a/pkgs/development/python-modules/types-dateutil/default.nix b/pkgs/development/python-modules/types-dateutil/default.nix index 4614a92ae64..4cefc57ed59 100644 --- a/pkgs/development/python-modules/types-dateutil/default.nix +++ b/pkgs/development/python-modules/types-dateutil/default.nix @@ -5,12 +5,12 @@ buildPythonPackage rec { pname = "types-python-dateutil"; - version = "2.8.9"; + version = "2.8.10"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "sha256-kPlaa21Pq6NZKH8XosrlEczJ1KvImwGWm9rBGFgVwF0="; + sha256 = "sha256-a886rnJC5Xk7r9eyvPtOJV63srMUSs0N8OGC3OWMytM="; }; pythonImportsCheck = [ "dateutil-stubs" ]; diff --git a/pkgs/development/python-modules/types-freezegun/default.nix b/pkgs/development/python-modules/types-freezegun/default.nix index 687ddd1b17c..a288a25fe5c 100644 --- a/pkgs/development/python-modules/types-freezegun/default.nix +++ b/pkgs/development/python-modules/types-freezegun/default.nix @@ -5,12 +5,12 @@ buildPythonPackage rec { pname = "types-freezegun"; - version = "1.1.6"; + version = "1.1.7"; format = "setuptools"; src = fetchPypi { inherit pname version; - hash = "sha256-XHCkt0RLjH3SgA4AY9b+chqxEgk5kmT6D3evJT3YsU8="; + hash = "sha256-6dEyfpjGyqj2XeABje0nQ0fo40GY1ZqppcJK2SZdXl4="; }; # Module doesn't have tests diff --git a/pkgs/development/python-modules/types-paramiko/default.nix b/pkgs/development/python-modules/types-paramiko/default.nix index f43fc5ed507..5b87e8079a5 100644 --- a/pkgs/development/python-modules/types-paramiko/default.nix +++ b/pkgs/development/python-modules/types-paramiko/default.nix @@ -6,11 +6,11 @@ buildPythonPackage rec { pname = "types-paramiko"; - version = "2.8.16"; + version = "2.8.17"; src = fetchPypi { inherit pname version; - sha256 = "sha256-HWkCWoa5509G2OHyPFijb5RVORAvE1tQEgL7myxP0SI="; + sha256 = "sha256-1toFPkau9cYpvE6lvatWZwhlNerg/P2N6EBpQ7g00uY="; }; pythonImportsCheck = [ diff --git a/pkgs/development/python-modules/types-pytz/default.nix b/pkgs/development/python-modules/types-pytz/default.nix index 1fc7dd5f9b6..eecf45c82fa 100644 --- a/pkgs/development/python-modules/types-pytz/default.nix +++ b/pkgs/development/python-modules/types-pytz/default.nix @@ -5,12 +5,12 @@ buildPythonPackage rec { pname = "types-pytz"; - version = "2021.3.5"; + version = "2021.3.6"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "sha256-/vjeI47pUTWVIimiojv7h71j1abIWYEGpGz89I8Gnqg="; + sha256 = "sha256-dFR/2Q2NirTx7t86NEp9GG2XSGlziV+BIhpxLh4s2ZM="; }; # Modules doesn't have tests diff --git a/pkgs/development/python-modules/types-requests/default.nix b/pkgs/development/python-modules/types-requests/default.nix index c62190ff5da..d6d7f752a7a 100644 --- a/pkgs/development/python-modules/types-requests/default.nix +++ b/pkgs/development/python-modules/types-requests/default.nix @@ -6,12 +6,12 @@ buildPythonPackage rec { pname = "types-requests"; - version = "2.27.12"; + version = "2.27.14"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "sha256-/ROC+i4o6shI+u2wMyhAIE8G8MtRcAjjx7goLKU+VtI="; + sha256 = "sha256-BFee4WT3wmWb5GlQ48L41RoIGtJS7xsB1LEvq6XDgQs="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/types-setuptools/default.nix b/pkgs/development/python-modules/types-setuptools/default.nix index 46fe7da5d1c..c59baea3c6e 100644 --- a/pkgs/development/python-modules/types-setuptools/default.nix +++ b/pkgs/development/python-modules/types-setuptools/default.nix @@ -5,12 +5,12 @@ buildPythonPackage rec { pname = "types-setuptools"; - version = "57.4.10"; + version = "57.4.11"; format = "setuptools"; src = fetchPypi { inherit pname version; - sha256 = "sha256-mhNRNnnGQPZhbi2atQ1DHJnKiumEipckP4h8gP1c8pQ="; + sha256 = "sha256-Ji90BuDH1wWta7RSa1t2H6UAv5nqt03oWsNZIYfWKTU="; }; # Module doesn't have tests diff --git a/pkgs/development/python-modules/types-tabulate/default.nix b/pkgs/development/python-modules/types-tabulate/default.nix index 9e5c9b628b2..6d7ceade85c 100644 --- a/pkgs/development/python-modules/types-tabulate/default.nix +++ b/pkgs/development/python-modules/types-tabulate/default.nix @@ -5,11 +5,11 @@ buildPythonPackage rec { pname = "types-tabulate"; - version = "0.8.5"; + version = "0.8.6"; src = fetchPypi { inherit pname version; - hash = "sha256-A/KDvzhOoSG3tqWK+zj03vl/MHBPyhOg2mhpNrDzkqw="; + hash = "sha256-P037eVRJwheO1cIU7FEUwESx7t1xrQoQA7xnDwnYcQo="; }; # Module doesn't have tests diff --git a/pkgs/development/python-modules/vt-py/default.nix b/pkgs/development/python-modules/vt-py/default.nix index 13eeb86be8d..8228047d9ce 100644 --- a/pkgs/development/python-modules/vt-py/default.nix +++ b/pkgs/development/python-modules/vt-py/default.nix @@ -10,7 +10,7 @@ buildPythonPackage rec { pname = "vt-py"; - version = "0.13.2"; + version = "0.14.0"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -19,7 +19,7 @@ buildPythonPackage rec { owner = "VirusTotal"; repo = pname; rev = version; - sha256 = "sha256-ULzMz81s/C5wjIUtZ+Rz5o1Uump1FV0rTcNW9keERDk="; + sha256 = "sha256-901VW56vr6ysMlzspgVbPMLnDIpJRgSEOEQ8ohHp+mc="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/python-modules/wrf-python/default.nix b/pkgs/development/python-modules/wrf-python/default.nix index 94234b2626e..14e81df65fc 100644 --- a/pkgs/development/python-modules/wrf-python/default.nix +++ b/pkgs/development/python-modules/wrf-python/default.nix @@ -1,14 +1,27 @@ -{lib, fetchFromGitHub, pythonOlder, buildPythonPackage, gfortran, mock, xarray, wrapt, numpy, netcdf4, setuptools}: +{lib +, fetchFromGitHub +, pythonOlder +, buildPythonPackage +, gfortran +, xarray +, wrapt +, numpy +, netcdf4 +, setuptools +}: buildPythonPackage rec { pname = "wrf-python"; - version = "1.3.2.6"; + version = "1.3.3"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; src = fetchFromGitHub { owner = "NCAR"; repo = "wrf-python"; rev = version; - sha256 = "046kflai71r7xrmdw6jn0ifn5656wj9gpnwlgxkx430dgk7zbc2y"; + hash = "sha256-+v4FEK0FVE0oAIb18XDTOInHKfxXyykb1ngk9Uxwf0c="; }; propagatedBuildInputs = [ @@ -24,9 +37,8 @@ buildPythonPackage rec { checkInputs = [ netcdf4 - ] ++ lib.optional (pythonOlder "3.3") mock; + ]; - doCheck = true; checkPhase = '' runHook preCheck cd ./test/ci_tests @@ -34,10 +46,14 @@ buildPythonPackage rec { runHook postCheck ''; - meta = { + pythonImportsCheck = [ + "wrf" + ]; + + meta = with lib; { description = "WRF postprocessing library for Python"; homepage = "http://wrf-python.rtfd.org"; - license = lib.licenses.asl20; - maintainers = with lib.maintainers; [ mhaselsteiner ]; + license = licenses.asl20; + maintainers = with maintainers; [ mhaselsteiner ]; }; } diff --git a/pkgs/development/python-modules/xhtml2pdf/default.nix b/pkgs/development/python-modules/xhtml2pdf/default.nix index efdb40cd6f8..5a47fc90f67 100644 --- a/pkgs/development/python-modules/xhtml2pdf/default.nix +++ b/pkgs/development/python-modules/xhtml2pdf/default.nix @@ -1,34 +1,53 @@ { lib +, arabic-reshaper , buildPythonPackage -, fetchPypi -, pillow +, fetchFromGitHub , html5lib -, pypdf2 -, reportlab -, six +, pillow +, pypdf3 +, pytestCheckHook , python-bidi -, arabic-reshaper -, setuptools +, pythonOlder +, reportlab +, svglib }: buildPythonPackage rec { pname = "xhtml2pdf"; - version = "0.2.5"; + version = "0.2.6"; + format = "setuptools"; + + disabled = pythonOlder "3.7"; + + src = fetchFromGitHub { + owner = pname; + repo = pname; + rev = "v${version}"; + hash = "sha256-EyIERvAC98LqPTMCdwWqTkm1RiMhikscL0tnMZUHIT8="; + }; propagatedBuildInputs = [ - pillow html5lib pypdf2 reportlab six - setuptools python-bidi arabic-reshaper + arabic-reshaper + html5lib + pillow + pypdf3 + python-bidi + reportlab + svglib ]; - src = fetchPypi { - inherit pname version; - sha256 = "6797e974fac66f0efbe927c1539a2756ca4fe8777eaa5882bac132fc76b39421"; - }; + checkInputs = [ + pytestCheckHook + ]; + + pythonImportsCheck = [ + "xhtml2pdf" + ]; meta = with lib; { description = "A PDF generator using HTML and CSS"; homepage = "https://github.com/xhtml2pdf/xhtml2pdf"; license = licenses.asl20; + maintainers = with maintainers; [ ]; }; - } diff --git a/pkgs/development/python-modules/xmltodict/default.nix b/pkgs/development/python-modules/xmltodict/default.nix index 790aaec3ce3..13cc5b89c2a 100644 --- a/pkgs/development/python-modules/xmltodict/default.nix +++ b/pkgs/development/python-modules/xmltodict/default.nix @@ -2,7 +2,7 @@ , buildPythonPackage , fetchPypi , coverage -, nose +, pytestCheckHook }: buildPythonPackage rec { @@ -14,11 +14,13 @@ buildPythonPackage rec { sha256 = "50d8c638ed7ecb88d90561beedbf720c9b4e851a9fa6c47ebd64e99d166d8a21"; }; - checkInputs = [ coverage nose ]; + checkInputs = [ coverage pytestCheckHook ]; - checkPhase = '' - nosetests - ''; + disabledTests = [ + # incompatibilities with security fixes: https://github.com/martinblech/xmltodict/issues/289 + "test_namespace_collapse" + "test_namespace_support" + ]; meta = { description = "Makes working with XML feel like you are working with JSON"; diff --git a/pkgs/development/python-modules/yalexs/default.nix b/pkgs/development/python-modules/yalexs/default.nix index 22440766fd0..2eb38dd0784 100644 --- a/pkgs/development/python-modules/yalexs/default.nix +++ b/pkgs/development/python-modules/yalexs/default.nix @@ -17,7 +17,7 @@ buildPythonPackage rec { pname = "yalexs"; - version = "1.1.22"; + version = "1.1.23"; format = "setuptools"; disabled = pythonOlder "3.6"; @@ -26,7 +26,7 @@ buildPythonPackage rec { owner = "bdraco"; repo = pname; rev = "v${version}"; - sha256 = "sha256-qtJSGvvYcdGYUUHnRnKe+z+twFqLGAn1Zl47F4CGnvc="; + sha256 = "sha256-CnAVkwCOADBNY0cUvq9Dt6JR+fIr4LiZVMzJIIFqzG0="; }; propagatedBuildInputs = [ diff --git a/pkgs/development/quickemu/default.nix b/pkgs/development/quickemu/default.nix index aa9906c77ec..7aa5b1602c3 100644 --- a/pkgs/development/quickemu/default.nix +++ b/pkgs/development/quickemu/default.nix @@ -43,17 +43,16 @@ in stdenv.mkDerivation rec { pname = "quickemu"; - version = "3.11"; + version = "3.14"; src = fetchFromGitHub { owner = "quickemu-project"; repo = "quickemu"; rev = version; - sha256 = "1xwf9vwbr57wmyxfcqzl1jnmfx3ffh7sfqf0zcdq41wqkm8s106n"; + sha256="sha256-7zaXazGzb36Nwk/meJ3lGD+l+fylWZYnhttDL1CXN9s="; }; patches = [ - ./efi_vars_ensure_writable.patch ./input_overrides.patch ]; diff --git a/pkgs/development/quickemu/efi_vars_ensure_writable.patch b/pkgs/development/quickemu/efi_vars_ensure_writable.patch deleted file mode 100644 index e146d0ba768..00000000000 --- a/pkgs/development/quickemu/efi_vars_ensure_writable.patch +++ /dev/null @@ -1,13 +0,0 @@ -diff --git a/quickemu b/quickemu -index a9a60a5..1a932ac 100755 ---- a/quickemu -+++ b/quickemu -@@ -197,7 +197,7 @@ function efi_vars() { - - if [ ! -e "${VARS_OUT}" ]; then - if [ -e "${VARS_IN}" ]; then -- cp "${VARS_IN}" "${VARS_OUT}" -+ cp "${VARS_IN}" "${VARS_OUT}" && chmod +w "${VARS_OUT}" - else - echo "ERROR! ${VARS_IN} was not found. Please install edk2." - exit 1 diff --git a/pkgs/development/quickemu/input_overrides.patch b/pkgs/development/quickemu/input_overrides.patch index 228624edcf1..42e4d2e1829 100644 --- a/pkgs/development/quickemu/input_overrides.patch +++ b/pkgs/development/quickemu/input_overrides.patch @@ -1,20 +1,29 @@ diff --git a/quickemu b/quickemu -index 1a932ac..ab2f752 100755 +index 24e1007..39cd5e4 100755 --- a/quickemu +++ b/quickemu +@@ -196,7 +196,7 @@ function efi_vars() { + + if [ ! -e "${VARS_OUT}" ]; then + if [ -e "${VARS_IN}" ]; then +- cp "${VARS_IN}" "${VARS_OUT}" ++ cp "${VARS_IN}" "${VARS_OUT}" && chmod +w "${VARS_OUT}" + else + echo "ERROR! ${VARS_IN} was not found. Please install edk2." + exit 1 @@ -383,7 +383,10 @@ function vm_boot() { # https://bugzilla.redhat.com/show_bug.cgi?id=1929357#c5 case ${secureboot} in on) -- if [ -e "/usr/share/OVMF/OVMF_CODE_4M.secboot.fd" ]; then +- if [ -e "/usr/share/OVMF/OVMF_CODE_4M.secboot.fd" ]; then + if [[ ${ENV_EFI_CODE_SECURE} && ${ENV_EFI_CODE_SECURE-x} ]] && [[ ${ENV_EFI_VARS_SECURE} && ${ENV_EFI_VARS_SECURE-x} ]]; then -+ EFI_CODE="${ENV_EFI_CODE_SECURE}" -+ efi_vars "${ENV_EFI_VARS_SECURE}" "${EFI_VARS}" ++ EFI_CODE="${ENV_EFI_CODE_SECURE}" ++ efi_vars "${ENV_EFI_VARS_SECURE}" "${EFI_VARS}" + elif [ -e "/usr/share/OVMF/OVMF_CODE_4M.secboot.fd" ]; then EFI_CODE="/usr/share/OVMF/OVMF_CODE_4M.secboot.fd" efi_vars "/usr/share/OVMF/OVMF_VARS_4M.fd" "${EFI_VARS}" elif [ -e "/usr/share/edk2/ovmf/OVMF_CODE.secboot.fd" ]; then -@@ -402,7 +405,10 @@ function vm_boot() { +@@ -408,7 +411,10 @@ function vm_boot() { fi ;; *) diff --git a/pkgs/development/r-modules/bioc-experiment-packages.nix b/pkgs/development/r-modules/bioc-experiment-packages.nix index 46c8c0e069f..5974766e04b 100644 --- a/pkgs/development/r-modules/bioc-experiment-packages.nix +++ b/pkgs/development/r-modules/bioc-experiment-packages.nix @@ -107,7 +107,7 @@ in with self; { KOdata = derive2 { name="KOdata"; version="1.20.0"; sha256="11ar6bp6j615hcqa8w0dha1d57r8kxwjr0aikmxl3j058yrv2p6m"; depends=[]; }; LRcellTypeMarkers = derive2 { name="LRcellTypeMarkers"; version="1.2.0"; sha256="0c7nwyskm5kx2z56vr8wb1c8ll8z3z7ywi52s4d1nmhmj9dyzmb3"; depends=[ExperimentHub]; }; LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.32.0"; sha256="1kgydp7x3kdhh5kzwrh9fjc9zfw1jx4bbkgxc46vh1dwz8kbkbch"; depends=[IRanges KernSmooth]; }; - ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.26.0"; sha256="0ag820shlpknc2zbqiwafisbg4hr7paqv3g26ghrvyvbkmqmj1w8"; depends=[methylPipe]; }; + ListerEtAlBSseq = derive2 { name="ListerEtAlBSseq"; version="1.26.0"; sha256="0ag820shlpknc2zbqiwafisbg4hr7paqv3g26ghrvyvbkmqmj1w8"; depends=[]; }; LungCancerACvsSCCGEO = derive2 { name="LungCancerACvsSCCGEO"; version="1.30.0"; sha256="0sfadyna4njvz1dn0z3vhvyykl864534qr200swj4cmsny52bsdh"; depends=[]; }; LungCancerLines = derive2 { name="LungCancerLines"; version="0.32.0"; sha256="1clsdv7ryk46i7640sj77xnwqqw32aa9gy9g8hvhg4sliiqmgvjw"; depends=[Rsamtools]; }; M3DExampleData = derive2 { name="M3DExampleData"; version="1.20.0"; sha256="0qnbd53lhfq78k2v9qpkwpcf75mg9asf6765pqq2f0ivi2a4jrjs"; depends=[]; }; diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix index 5358d3e5804..965b3d50471 100644 --- a/pkgs/development/r-modules/bioc-packages.nix +++ b/pkgs/development/r-modules/bioc-packages.nix @@ -42,7 +42,7 @@ in with self; { AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.32.0"; sha256="1s6arjd0nxgxyqy7vhqcb78k0ss7vwrhv41pm346hs1nyr5dkzaq"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; }; AlphaBeta = derive2 { name="AlphaBeta"; version="1.8.0"; sha256="0ya3dqvdf8iyd5bscc9lc476vkc7kamiqgjvxhxl4ay5j4vn02nr"; depends=[BiocParallel data_table dplyr expm ggplot2 gtools igraph optimx plotly stringr]; }; AlpsNMR = derive2 { name="AlpsNMR"; version="3.4.0"; sha256="0h8y9hi97zbv3qzjskxh81qjarmwx2w790kpspljgxa214f58fzv"; depends=[assertthat baseline BiocParallel dplyr fs furrr future GGally ggplot2 ggrepel glue htmltools magrittr matrixStats mixOmics pcaPP plyr purrr readxl reshape2 rlang rmarkdown S4Vectors signal speaq stringr SummarizedExperiment tibble tidyr tidyselect vctrs writexl zip]; }; - AnVIL = derive2 { name="AnVIL"; version="1.6.2"; sha256="0qiadpn9pwhm7dqmsycpiaqvwf5il4gy2058hl5mnm954bj9hna4"; depends=[BiocManager dplyr futile_logger httr jsonlite rapiclient rlang tibble tidyr tidyselect]; }; + AnVIL = derive2 { name="AnVIL"; version="1.6.5"; sha256="0ipf3916xwmg22kmc0qk7x8sw3bb6579cffmdwsizr1mw84cdjwd"; depends=[BiocManager dplyr futile_logger httr jsonlite rapiclient rlang tibble tidyr tidyselect]; }; AnVILBilling = derive2 { name="AnVILBilling"; version="1.4.0"; sha256="0pg5r6qn18i91z2ixapdkranaacv9z8ljmdb33vdn2dqwv2w85b1"; depends=[bigrquery DBI dplyr DT ggplot2 lubridate magrittr plotly shiny shinytoastr]; }; AnVILPublish = derive2 { name="AnVILPublish"; version="1.4.1"; sha256="0jvh22kz9mg4r49mbzvbvzbn58lzj5mvk7qb4pizn4sd8xsbvmyq"; depends=[AnVIL httr jsonlite readr rmarkdown whisker yaml]; }; Anaquin = derive2 { name="Anaquin"; version="2.18.0"; sha256="0b9clpqy2jfhign30nab1369xswrkmqm6dx14mf6wjrvcl9xpm2s"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; }; @@ -50,12 +50,11 @@ in with self; { AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.56.2"; sha256="01zwq14msbbwzxv8rgpmyr74ymvhq0vnmxkxxwd886iac5vjlgi8"; depends=[Biobase BiocGenerics DBI IRanges KEGGREST RSQLite S4Vectors]; }; AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.18.0"; sha256="15fp1228yb06jm5cblvhw3qv9mlpbjfggaz2nvi3p46mby1vs64w"; depends=[GenomicRanges lazyeval]; }; AnnotationForge = derive2 { name="AnnotationForge"; version="1.36.0"; sha256="02wvni5q560idi6677g5f4md73z4qzjl5yycxv5dbvgbl2picisz"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; }; - AnnotationHub = derive2 { name="AnnotationHub"; version="3.2.1"; sha256="08d9hfjj79c1rrmq3gf132zfx0gld5q0jwmqgghfvmn8zrppz8sf"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; }; + AnnotationHub = derive2 { name="AnnotationHub"; version="3.2.2"; sha256="08dk4h07gpi3rk9s80wrbx2ww2chj688qzbwlx8n4dz788lqbfz8"; depends=[AnnotationDbi BiocFileCache BiocGenerics BiocManager BiocVersion curl dplyr httr interactiveDisplayBase rappdirs RSQLite S4Vectors yaml]; }; AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.24.2"; sha256="00n195xbja01r64mjsjvk3xpwx9mwj5x8n4l810jspf4cdjv5cbl"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocCheck BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges jsonlite OrganismDbi RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; }; ArrayExpress = derive2 { name="ArrayExpress"; version="1.54.0"; sha256="1rfvycrjlw0x1sqjrmiyf8i7yjiwjqf8x83i7pfg78yg9k5sh9vi"; depends=[Biobase limma oligo XML]; }; ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.44.0"; sha256="1mjnddy05y06bn25xcjdx8kz538z3k4gvyqrb1lg4z8593xaw40i"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer Rhtslib rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; }; AssessORF = derive2 { name="AssessORF"; version="1.12.0"; sha256="0rn2ijnpa8a6w2zv3cvm1s5bhcvzmb4xk18d96wjc60gxk51i5wy"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; }; - Autotuner = derive2 { name="Autotuner"; version="1.7.0"; sha256="0k07gs6bnxs0894iqi1lhk96mifjcdf68bv4q9fjv50nzqpzqd8l"; depends=[assertthat Biobase cluster entropy MSnbase mzR RColorBrewer scales]; }; BAC = derive2 { name="BAC"; version="1.54.0"; sha256="1xplpx3r34l3h43a4zgv9s5z4sw61vlq828gqwc7f0i73a2jbck3"; depends=[]; }; BADER = derive2 { name="BADER"; version="1.32.0"; sha256="1ngi4nrw0gfz7k4x1c5harl6a9bxfv8m7f1smxs5awnwr0jnv9pa"; depends=[]; }; BAGS = derive2 { name="BAGS"; version="2.34.0"; sha256="0lkg4c4ay20bhas9lr6aifxhw0yhh999v6d1kbbplw4hhd1b93ha"; depends=[Biobase breastCancerVDX]; }; @@ -92,7 +91,7 @@ in with self; { BgeeDB = derive2 { name="BgeeDB"; version="2.20.0"; sha256="0pjymal01sjl5dc37g66wykgxnksarlbvwnbvhg7w0i7y92zavqk"; depends=[Biobase curl data_table digest dplyr graph R_utils RCurl RSQLite tidyr topGO]; }; BiFET = derive2 { name="BiFET"; version="1.14.0"; sha256="0vidypvphnj76g4ra5ijrgqx2dnzw0fmvdvz35gsqswrr3k20jkk"; depends=[GenomicRanges poibin]; }; BiGGR = derive2 { name="BiGGR"; version="1.30.0"; sha256="1g01666wwznk148776s4vr1hfi3dfl448dhgk4d1qy2wv6sxh9kr"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; }; - BiRewire = derive2 { name="BiRewire"; version="3.26.0"; sha256="0ki4rcwjgbixzy5q9s30ajx5zhpl18q50znrb60fchvl4hj9h93w"; depends=[igraph Matrix slam tsne]; }; + BiRewire = derive2 { name="BiRewire"; version="3.26.2"; sha256="114qljg6yqx55yi0w5nmhdz9260dzkj73bjgqh8w9kpfvcb0439l"; depends=[igraph Matrix slam tsne]; }; BiSeq = derive2 { name="BiSeq"; version="1.34.0"; sha256="05namdzj196rzjg3wqvamj3xpn039dbfhfpmc6p8ifxn9c9dnd3c"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; }; BicARE = derive2 { name="BicARE"; version="1.52.0"; sha256="1g8vrsc05cysb36gsw8sfmr6dgbh4aji37vcq9qwkmkv3jgvnlf6"; depends=[Biobase GSEABase multtest]; }; BindingSiteFinder = derive2 { name="BindingSiteFinder"; version="1.0.0"; sha256="0mvl2mh2px315ilfmf9ax5qjz3282l56qm1a0v142bb7cxld13v7"; depends=[GenomicRanges ggforce ggplot2 matrixStats rtracklayer S4Vectors tidyr]; }; @@ -102,7 +101,7 @@ in with self; { BioNERO = derive2 { name="BioNERO"; version="1.2.0"; sha256="0ddrzv1g46hvm52dzrcj5nbyyw9a16cqk8zg20wnkrh3qw1h4d9p"; depends=[BiocParallel ComplexHeatmap DESeq2 dynamicTreeCut GENIE3 ggnetwork ggnewscale ggplot2 ggpubr igraph intergraph matrixStats minet NetRep networkD3 RColorBrewer reshape2 SummarizedExperiment sva WGCNA]; }; BioNet = derive2 { name="BioNet"; version="1.54.0"; sha256="05rj14jn4gn0hfn57amf19b8fqwkd3y2ji3mg7m1yg1w7n4qxqsg"; depends=[AnnotationDbi Biobase graph igraph RBGL]; }; BioNetStat = derive2 { name="BioNetStat"; version="1.14.0"; sha256="13br8x4809hrr4ibz6iy5qjza9j6cazmkpvfikvw6bs588csxwf8"; depends=[BiocParallel DT ggplot2 Hmisc igraph knitr markdown pathview pheatmap plyr psych RColorBrewer RJSONIO rmarkdown shiny shinyBS whisker yaml]; }; - BioPlex = derive2 { name="BioPlex"; version="1.0.1"; sha256="0fzvr72rjhrq9aldzb2hs61x6f1hbmv1a6gcblmzj9f11hny8va1"; depends=[BiocFileCache GEOquery graph SummarizedExperiment]; }; + BioPlex = derive2 { name="BioPlex"; version="1.0.2"; sha256="0n9hz10nak8vws90g0xl21xcrj2gy769ra6xwjx6nj19giyk4749"; depends=[BiocFileCache GEOquery graph SummarizedExperiment]; }; BioQC = derive2 { name="BioQC"; version="1.22.0"; sha256="190336qk0plg79gzvfn6wfplsi8nq0nj8508g7m0w3z6bdgwy407"; depends=[Biobase edgeR Rcpp]; }; BioTIP = derive2 { name="BioTIP"; version="1.8.0"; sha256="0xmy5c4i9gf6d04gara6lbnnldqmzjaascb2pd2ih60jw2mvl4ys"; depends=[cluster GenomicRanges Hmisc igraph MASS psych stringr]; }; Biobase = derive2 { name="Biobase"; version="2.54.0"; sha256="0kar2kgaayp5l7xv9zcxj61l01m8jlwnppql6qf01wsz36dacgww"; depends=[BiocGenerics]; }; @@ -147,7 +146,6 @@ in with self; { CGHcall = derive2 { name="CGHcall"; version="2.56.0"; sha256="1r4y8zakgmdbnpwgp14kwh4iwqgqcmjq2yg4nc7j37p09bw1c8zr"; depends=[Biobase CGHbase DNAcopy impute snowfall]; }; CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.48.0"; sha256="1zz4iaxyf5b03xalq58idnkrwcpsvh8zlz6hlxz487caw7c8xx6p"; depends=[Biobase CGHbase CGHcall]; }; CGHregions = derive2 { name="CGHregions"; version="1.52.0"; sha256="1g337b6fjmbbkpn9pw20z6bvacrlfh582n6lss3qw0s6x6w5cygs"; depends=[Biobase CGHbase]; }; - CHETAH = derive2 { name="CHETAH"; version="1.9.0"; sha256="1nfz8zpkrghfh942cr8xwvrj0d47h1nbf3nv534mp7rii38v07j3"; depends=[bioDist corrplot cowplot dendextend ggplot2 gplots pheatmap plotly reshape2 S4Vectors shiny SingleCellExperiment SummarizedExperiment]; }; CHRONOS = derive2 { name="CHRONOS"; version="1.22.0"; sha256="18fdvbdbl0rms1fs27yi6lvf3xnn3pjfm1qngaaz4c06v207mg9w"; depends=[biomaRt circlize doParallel foreach graph igraph openxlsx RBGL RCurl rJava XML]; }; CIMICE = derive2 { name="CIMICE"; version="1.2.0"; sha256="0d2sglrp8ansh8nibbqyg3pvhaaw33q5mzci382pwky05mpy9sjk"; depends=[assertthat dplyr ggcorrplot ggplot2 ggraph glue igraph maftools Matrix networkD3 purrr relations tidyr visNetwork]; }; CINdex = derive2 { name="CINdex"; version="1.22.0"; sha256="0a73rdhmsprbbq69yvnnhgp86wic255yxrj82k1i1k62f3bsi74c"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; }; @@ -160,7 +158,7 @@ in with self; { CNORode = derive2 { name="CNORode"; version="1.36.0"; sha256="11l8lw4i8n71ki2fl218wpf7imsxpamxx9abj2axwi467cziq55x"; depends=[CellNOptR genalg]; }; CNTools = derive2 { name="CNTools"; version="1.50.0"; sha256="198mvxz8zm32mvnq825iivzc8z1ff187g40kb867ck4svn1mysf6"; depends=[genefilter]; }; CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.26.0"; sha256="0v4abknw96zrvir2g676kh81l5jhbxwb10xymzcn1bk3l9vknnpm"; depends=[BiocGenerics exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; }; - CNVRanger = derive2 { name="CNVRanger"; version="1.10.0"; sha256="0pqzs7268c17nh2i6hmg630wfpks2ixyp122iakyl0hxvxd0v2w7"; depends=[BiocGenerics BiocParallel data_table edgeR GDSArray gdsfmt GenomeInfoDb GenomicRanges IRanges lattice limma plyr qqman RaggedExperiment rappdirs reshape2 S4Vectors SNPRelate SummarizedExperiment]; }; + CNVRanger = derive2 { name="CNVRanger"; version="1.10.3"; sha256="0z7gps8nv7diphgk3nbc2gcdhjd7mbqcmjhassa9vg3nh9848m0a"; depends=[BiocGenerics BiocParallel data_table edgeR GDSArray gdsfmt GenomeInfoDb GenomicRanges IRanges lattice limma plyr qqman RaggedExperiment rappdirs reshape2 S4Vectors SNPRelate SummarizedExperiment]; }; CNVfilteR = derive2 { name="CNVfilteR"; version="1.8.0"; sha256="0ap1k0aikfynwbynwd19l2nkj48d9h86smm7vrrfr1chrmglv84k"; depends=[assertthat Biostrings CopyNumberPlots GenomeInfoDb GenomicRanges IRanges karyoploteR pracma regioneR Rsamtools SummarizedExperiment VariantAnnotation]; }; CNVgears = derive2 { name="CNVgears"; version="1.2.0"; sha256="1vswa2vyxknykims3cgwhbx9v0cw5978639bpgf7d7mwk63h6k6c"; depends=[data_table ggplot2]; }; CNViz = derive2 { name="CNViz"; version="1.2.0"; sha256="08273c1jwrxcg4xyh6z7aqsy0sgk4ds8jzg8d8dxwscpfjjdbdcp"; depends=[CopyNumberPlots dplyr DT GenomicRanges karyoploteR magrittr plotly scales shiny]; }; @@ -230,7 +228,6 @@ in with self; { CopywriteR = derive2 { name="CopywriteR"; version="2.26.0"; sha256="0xm5gjzi4r1xzyn7r669blqxhyhmbk9rh9k2gn696j14hbhc1hcy"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; }; CoreGx = derive2 { name="CoreGx"; version="1.6.0"; sha256="12825lplihp10wvvg90gkk96vabvycfi32kpbs2garbzcjshqygh"; depends=[Biobase BiocGenerics BiocParallel BumpyMatrix checkmate crayon data_table glue lsa MatrixGenerics MultiAssayExperiment piano rlang S4Vectors SummarizedExperiment]; }; Cormotif = derive2 { name="Cormotif"; version="1.40.0"; sha256="1dzsnfgrgjgjk9a1jbsjfarcjvxnvswph495lcaiw8fh5mibf9qb"; depends=[affy limma]; }; - CountClust = derive2 { name="CountClust"; version="1.21.0"; sha256="17px9jkpjwz0j2f5h8xv52wh24ilqvlb6dvczjc36lb7mq4cw3sq"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; }; CoverageView = derive2 { name="CoverageView"; version="1.32.0"; sha256="0sb1h5qsk41c9xisq73agqh502wv6p2j1k45s32a4bkdynf696as"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; }; CrispRVariants = derive2 { name="CrispRVariants"; version="1.22.0"; sha256="0jvrsc0fz8li8v6xigvkq514x0pirnbrp7lgvjqxxj8i3l7y536i"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; }; CyTOFpower = derive2 { name="CyTOFpower"; version="1.0.0"; sha256="1h2dmnkjv62ws7ljixq1nj50hnqk3r70xhzkh159cjkirf9r4xwn"; depends=[CytoGLMM diffcyt dplyr DT ggplot2 magrittr rlang shiny shinyFeedback shinyjs shinyMatrix SummarizedExperiment tibble tidyr]; }; @@ -262,7 +259,7 @@ in with self; { DMCHMM = derive2 { name="DMCHMM"; version="1.16.0"; sha256="0r12m3ldbi1h0fdg4hgxfq1f0lrz49a08i7kr6imdspzm8hl2j65"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; }; DMRScan = derive2 { name="DMRScan"; version="1.16.0"; sha256="0iza3yyjmggkxgn24raiwzppf4lvdj1lgq34lpk08mf6p5v0v601"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; }; DMRcaller = derive2 { name="DMRcaller"; version="1.26.0"; sha256="0qn3y2nj0pyy9kqpbv8nwsiypwl6kixxs2yj3bvhkhb5dgqj6p6w"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; }; - DMRcate = derive2 { name="DMRcate"; version="2.8.4"; sha256="03nh7q8mlpc2ffs5gh3aqvks2wd20zyq9vqhkhxq69xxi53wrbm3"; depends=[bsseq DMRcatedata DSS edgeR ExperimentHub GenomeInfoDb GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors SummarizedExperiment]; }; + DMRcate = derive2 { name="DMRcate"; version="2.8.5"; sha256="1346s2z1lj57asil8zmapv5fsgmywsn7q0qdskpfzm05rd4h91ny"; depends=[bsseq DSS edgeR ExperimentHub GenomeInfoDb GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors SummarizedExperiment]; }; DMRforPairs = derive2 { name="DMRforPairs"; version="1.30.0"; sha256="1f8b63chg3jrqbf669l2nk3a8wy5rya545zbypgzr2r51s284k7b"; depends=[GenomicRanges Gviz R2HTML]; }; DNABarcodeCompatibility = derive2 { name="DNABarcodeCompatibility"; version="1.10.0"; sha256="1dj4c8h648ckzrz0k6qrzvfgqz00wj0pdahhp35nlrldcavp90p6"; depends=[DNABarcodes dplyr numbers purrr stringr tidyr]; }; DNABarcodes = derive2 { name="DNABarcodes"; version="1.24.0"; sha256="07yaz98r18mjny1ilmfnjxcra7xpklnd183pw0kasvsri01ccwxg"; depends=[BH Matrix Rcpp]; }; @@ -285,12 +282,12 @@ in with self; { DelayedRandomArray = derive2 { name="DelayedRandomArray"; version="1.2.0"; sha256="1hi9pvxny8nm4akhshicksd04p7vflqa3m38k6kcs50slhgdp5ys"; depends=[BH DelayedArray dqrng Rcpp]; }; DelayedTensor = derive2 { name="DelayedTensor"; version="1.0.0"; sha256="0yg7r6j7r1sikc4wi6khh3dsbflzpj51sdh41q337lkmlxagwpbb"; depends=[BiocSingular DelayedArray DelayedRandomArray einsum HDF5Array irlba Matrix rTensor]; }; DepecheR = derive2 { name="DepecheR"; version="1.10.0"; sha256="1500jivij7zdycdd0i0b7mgp44w4z0hqnpzqbq8nhvzzdigic8x9"; depends=[beanplot doSNOW dplyr FNN foreach ggplot2 gmodels gplots MASS matrixStats mixOmics moments Rcpp RcppEigen reshape2 robustbase viridis]; }; - DiffBind = derive2 { name="DiffBind"; version="3.4.9"; sha256="1fpr96hfi7hy3pzf4rgnmrz2fk3qajwgsy32yqr839vjfsvw532z"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; }; + DiffBind = derive2 { name="DiffBind"; version="3.4.11"; sha256="1xprj3x3s3yh6fwsdcl4zgfbhn640422x1lhhrmvdr836jr8sxcj"; depends=[amap apeglm ashr BiocParallel DESeq2 dplyr GenomicAlignments GenomicRanges ggplot2 ggrepel gplots GreyListChIP IRanges lattice limma locfit RColorBrewer Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment systemPipeR]; }; DiffLogo = derive2 { name="DiffLogo"; version="2.18.0"; sha256="1axpyjr86a176rgv9wnrk04dv9llgkw9vr7h00scr6jw77wqya4n"; depends=[cba]; }; Dino = derive2 { name="Dino"; version="1.0.0"; sha256="1k83rhva7bxk1w6qvvdhx0r95p9nbzfdm3m7g6wpyq3qp0ifx5xp"; depends=[BiocParallel BiocSingular Matrix matrixStats S4Vectors scran Seurat SingleCellExperiment SummarizedExperiment]; }; Director = derive2 { name="Director"; version="1.20.0"; sha256="1f0a8rkpz698c5a41j7ii7ahxxaqn92rhx8sh3q66gpv0br8h44g"; depends=[htmltools]; }; DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.36.0"; sha256="06nallp9jj2vmaa7d18g6hiymjc109szdv8sp51r87n7s38bvyq6"; depends=[BiocGenerics IRanges S4Vectors]; }; - DiscoRhythm = derive2 { name="DiscoRhythm"; version="1.10.0"; sha256="1cb51c6bmvc1vgxih3sqcalbzhxn1b9ilf1q8j0ijwk7sxsdhy5l"; depends=[BiocGenerics BiocStyle broom data_table dplyr DT ggExtra ggplot2 gridExtra heatmaply kableExtra knitr magick matrixStats matrixTests MetaCycle plotly reshape2 rmarkdown S4Vectors shiny shinyBS shinycssloaders shinydashboard shinyjs SummarizedExperiment UpSetR VennDiagram viridis zip]; }; + DiscoRhythm = derive2 { name="DiscoRhythm"; version="1.10.1"; sha256="0bb8fmswicjnffa0w5j2iyy484zjcvh1isxk7gkjxm9snxbglmz6"; depends=[BiocGenerics BiocStyle broom data_table dplyr DT ggExtra ggplot2 gridExtra heatmaply kableExtra knitr magick matrixStats matrixTests MetaCycle plotly reshape2 rmarkdown S4Vectors shiny shinyBS shinycssloaders shinydashboard shinyjs SummarizedExperiment UpSetR VennDiagram viridis zip]; }; DominoEffect = derive2 { name="DominoEffect"; version="1.14.0"; sha256="13lksli177d11rw5692bc5qmp0x5bfkasriccaa28hklnqmbyjsc"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; }; Doscheda = derive2 { name="Doscheda"; version="1.16.0"; sha256="0lpmxnid43fvi41mc5r89mvvxn19baja8f4zr38j3dkb126dr476"; depends=[affy calibrate corrgram drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; }; DriverNet = derive2 { name="DriverNet"; version="1.34.0"; sha256="1qfjg5x3m2z5yjm0lgnw7rqhclic2fgzcdnq0nnwlqyp4i5na10q"; depends=[]; }; @@ -316,7 +313,7 @@ in with self; { EnMCB = derive2 { name="EnMCB"; version="1.6.0"; sha256="050mzns1zh643pxzqzc935hwczpk7xwa16qq7z88cagab2r8yx7j"; depends=[boot doParallel foreach ggplot2 glmnet IlluminaHumanMethylation450kanno_ilmn12_hg19 mboost minfi rms survival survivalROC survivalsvm]; }; EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="1.12.0"; sha256="19l1yz522hzmwwsgqqhwqrazqf6w015fi3j85n9pxqkyisz2r2x2"; depends=[ggalt ggplot2 ggrastr ggrepel]; }; EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.24.0"; sha256="1wbbasz3467jg6anzm57y4kijsysfkah1l5f82qw6ckrhv3rxylc"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; }; - EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.24.1"; sha256="1g08xvd6zav59cjj8sv12m03x35655npagxpnzg6awkmnx5x811s"; depends=[AnnotationDbi BiocFileCache BiocManager edgeR GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma pathview Rgraphviz S4Vectors safe SPIA SummarizedExperiment]; }; + EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.24.2"; sha256="0b1pgmfvbb7qba447szjakxdp1v9f63gmkvfqdw4g89f0k2ra40q"; depends=[AnnotationDbi BiocFileCache BiocManager edgeR GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma pathview Rgraphviz S4Vectors safe SPIA SummarizedExperiment]; }; EpiDISH = derive2 { name="EpiDISH"; version="2.10.0"; sha256="1fqyg3hfc40d1pvw02d95wr1lm2wi82yx3vrrsf7gs53i9gdm2q0"; depends=[e1071 locfdr MASS Matrix matrixStats quadprog stringr]; }; EpiTxDb = derive2 { name="EpiTxDb"; version="1.6.0"; sha256="0vmn4wqxwczq0ckx0pq20jbjp3a01nxj3knax1d3jx77cqqkwsaz"; depends=[AnnotationDbi BiocFileCache BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges httr IRanges Modstrings RSQLite S4Vectors tRNAdbImport xml2]; }; EventPointer = derive2 { name="EventPointer"; version="3.2.0"; sha256="0kg5psygc410gx6prb8as00csh6v3s1psbcn2ym4i4k5wnyzmbn3"; depends=[abind affxparser Biostrings BSgenome cobs doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges glmnet graph igraph IRanges iterators limma lpSolve MASS Matrix matrixStats nnls poibin prodlim qvalue RBGL rhdf5 S4Vectors SGSeq speedglm stringr SummarizedExperiment tximport]; }; @@ -340,7 +337,6 @@ in with self; { FastqCleaner = derive2 { name="FastqCleaner"; version="1.12.0"; sha256="1cw0916qdn1an3wcnx5659q2f22rs78p9m5v2xp9nyp5phjb97pp"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; }; FilterFFPE = derive2 { name="FilterFFPE"; version="1.4.0"; sha256="1c9mfhc4hms2f861f71i7hbhnn3s1xlzabcmdjzybwiv16dl139w"; depends=[doParallel foreach GenomicRanges IRanges Rsamtools S4Vectors]; }; FindIT2 = derive2 { name="FindIT2"; version="1.0.3"; sha256="0xgnsgpai7l7birivnpca0df74zh02q6l35dncz8i50x1yrf83hm"; depends=[BiocGenerics BiocParallel dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel glmnet IRanges MultiAssayExperiment patchwork progress purrr qvalue rlang rtracklayer S4Vectors stringr SummarizedExperiment tibble tidyr withr]; }; - FindMyFriends = derive2 { name="FindMyFriends"; version="1.23.0"; sha256="0xbhl6ljxb522r5062vv6xdziaaqkkwylmvlymvc5f1grjz0a4z9"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; }; FitHiC = derive2 { name="FitHiC"; version="1.20.0"; sha256="0a3d2bxp98lmbf3i864zgfwxwvxyqfcrh75z9yz7ra7y44pkjr4y"; depends=[data_table fdrtool Rcpp]; }; FlowSOM = derive2 { name="FlowSOM"; version="2.2.0"; sha256="062xrv8li2z849qa8mv5dhafqli6ziz099ikjfvi7v2fr7174p8f"; depends=[BiocGenerics colorRamps ConsensusClusterPlus CytoML dplyr flowCore flowWorkspace ggforce ggnewscale ggplot2 ggpointdensity ggpubr ggrepel igraph magrittr pheatmap RColorBrewer rlang Rtsne scattermore tidyr XML]; }; FoldGO = derive2 { name="FoldGO"; version="1.12.0"; sha256="07wk3i9q8m8jaamwfwnnxlm3xc0r7frlk6s2mndkkjs1sfrdb5z3"; depends=[ggplot2 tidyr topGO]; }; @@ -356,7 +352,7 @@ in with self; { GDCRNATools = derive2 { name="GDCRNATools"; version="1.14.0"; sha256="1h0gfi6mhr5kzwhqxkzgxz12abkn7svnbbzga70pp7az8m8vxmnn"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; }; GDSArray = derive2 { name="GDSArray"; version="1.14.1"; sha256="0v8kxy7xfhgghz4qg2djc4nxh2w3bk48b0cx1jx7lc45hm2qsdfx"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; }; GEM = derive2 { name="GEM"; version="1.20.0"; sha256="19jars2vajfgy2v9xrgp45gc2yn2hq31d9ikdpnkd9gvpqm99nkv"; depends=[ggplot2]; }; - GENESIS = derive2 { name="GENESIS"; version="2.24.0"; sha256="1n1h9aiyn8f8cznm8dkvndm3708nls2xr4v21sspz4vj8ahwvgaz"; depends=[Biobase BiocGenerics BiocParallel data_table gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; + GENESIS = derive2 { name="GENESIS"; version="2.24.1"; sha256="10b72yy6bx9alw8zr9rz22wgkqm1m6b2lr1flrf80mvxjihfy7as"; depends=[Biobase BiocGenerics BiocParallel data_table gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; }; GENIE3 = derive2 { name="GENIE3"; version="1.16.0"; sha256="0ms769267pimrx3xwwkgjy03qilkxxs7xwhzfca01f65i4n3l6fw"; depends=[dplyr reshape2]; }; GEOexplorer = derive2 { name="GEOexplorer"; version="1.0.0"; sha256="01hgjdp14b9r2044h0sd136f0px983n0il08wiii41vq1jgisvhb"; depends=[Biobase DT factoextra GEOquery ggplot2 heatmaply htmltools impute limma maptools pheatmap plotly scales shiny shinyBS shinybusy shinyHeatmaply stringr umap]; }; GEOfastq = derive2 { name="GEOfastq"; version="1.2.0"; sha256="03ya7x7dph6g97aa3gf3d7dinjcy8qipd0dyxqpdhdm1w1gx83by"; depends=[doParallel foreach plyr RCurl rvest stringr xml2]; }; @@ -413,12 +409,11 @@ in with self; { GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.14.0"; sha256="1w7nckmjc4zg5a20f4hjqjavmkdwngkjp70akrf3bh1qmbvpdr2a"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; }; GeneTonic = derive2 { name="GeneTonic"; version="1.6.1"; sha256="1kcl87bjjy933z8xkqc3nx5yy6b89f62iaf7p6hc69z4vw5xrydf"; depends=[AnnotationDbi backbone bs4Dash circlize colorspace colourpicker ComplexHeatmap dendextend DESeq2 dplyr DT dynamicTreeCut expm ggforce ggplot2 ggrepel GO_db igraph matrixStats plotly RColorBrewer rintrojs rlang rmarkdown S4Vectors scales shiny shinyAce shinycssloaders shinyWidgets SummarizedExperiment tidyr tippy viridis visNetwork]; }; GeneticsPed = derive2 { name="GeneticsPed"; version="1.56.0"; sha256="1gvk3wg5mqyc8j95l4djfc55ymv4i08az67znnly3r8376m07mqw"; depends=[gdata genetics MASS]; }; - GenoGAM = derive2 { name="GenoGAM"; version="2.11.0"; sha256="058qix2h0zm2k9csmbdhci2wqih3lyggjj591cqn0ls2nv7bnyvj"; depends=[BiocParallel Biostrings data_table DelayedArray DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges HDF5Array IRanges Matrix Rcpp RcppArmadillo rhdf5 Rsamtools S4Vectors sparseinv SummarizedExperiment]; }; GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.30.1"; sha256="1ly851w6xy144qvmpdv7p64yc45bqxmvny2rzgz691h3qbin3x55"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; }; GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.30.0"; sha256="1jwksis94mk8bmdggk0w3kvxqwp4di6x78xgsjk6ij54710adyq9"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; }; GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.18.0"; sha256="1nr504dchiifbagrjq0cck5rzd23dcfnvx6bsw9wikw5mg4gib9l"; depends=[dplyr GenomicRanges httr IRanges jsonlite magrittr rappdirs readr rlang S4Vectors SummarizedExperiment tibble xml2]; }; GenomicDistributions = derive2 { name="GenomicDistributions"; version="1.2.0"; sha256="07c3rxvgm2abs01kzczbpy7kmn3yzcdf5z35dlk1bc2ry3s5dsd1"; depends=[Biostrings data_table dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges plyr reshape2]; }; - GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.46.4"; sha256="0r0vi6hkp5yhgdw1df2y8ivz7fbcbxs9zqpavlkyklpfbrs32yay"; depends=[AnnotationDbi Biobase BiocGenerics BiocIO biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; + GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.46.5"; sha256="1fhahqh87cikfrwqkm2z4nq3jyi530qvsbmf09j2hyhsm87hhrgg"; depends=[AnnotationDbi Biobase BiocGenerics BiocIO biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; }; GenomicFiles = derive2 { name="GenomicFiles"; version="1.30.0"; sha256="0i5y6dk6z18yqj5k4zy756c6l57z9jq2w5a5dksh2di4qgdgjx3x"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges MatrixGenerics Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.28.0"; sha256="090kxq5jn1jfr9fgbkvbjr5g4bcxzgsaal3gc9yx1n7pgmhccfmb"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; }; GenomicOZone = derive2 { name="GenomicOZone"; version="1.8.0"; sha256="1dx72y7kmj7ng3r6qn9bzlmgq9pf7g738myhgrnmk4ivjl6f615w"; depends=[biomaRt Ckmeans_1d_dp GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges lsr plyr Rdpack S4Vectors]; }; @@ -457,8 +452,6 @@ in with self; { Harshlight = derive2 { name="Harshlight"; version="1.66.0"; sha256="0a0zxy2f5ff74gaa24mahym2az2azp4k4i4hw8kgj7zj4mj6pzjz"; depends=[affy altcdfenvs Biobase]; }; Heatplus = derive2 { name="Heatplus"; version="3.2.0"; sha256="0yrnjrbfn8vjzvp2742lyxdqca4s18h73j44qxw7ib95x3p4lndf"; depends=[RColorBrewer]; }; HelloRanges = derive2 { name="HelloRanges"; version="1.20.0"; sha256="1f9fyafp3spxb76xl8ncww0dzfi4dbzh9ijqzs89dc7m10saq89p"; depends=[BiocGenerics Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; }; - Herper = derive2 { name="Herper"; version="1.3.0"; sha256="038cavnbz7gvmv9mpnf88n8dzrg7yl306y68zsq5hpkrj6qax9vr"; depends=[reticulate rjson withr]; }; - HiCBricks = derive2 { name="HiCBricks"; version="1.11.0"; sha256="12s01r9z569pp6amlvcs7fqmwivw9jb2ahnnyq6nzflsyn5277kl"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; }; HiCDCPlus = derive2 { name="HiCDCPlus"; version="1.2.1"; sha256="0ywy0xwymrd9pknnz654vz31463js3rl3f1avmzjzd4krkf2vdgh"; depends=[bbmle Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicInteractions GenomicRanges InteractionSet IRanges MASS pscl R_utils Rcpp rlang rtracklayer S4Vectors tibble tidyr]; }; HiCcompare = derive2 { name="HiCcompare"; version="1.16.0"; sha256="0g2gsy27prk8b4anywim0qskishc52zh0p3854v04l6jax26675r"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq rhdf5 S4Vectors]; }; HiLDA = derive2 { name="HiLDA"; version="1.8.0"; sha256="02yss2nr6f9zb6kd11id4p3zcgdvr66zlf4s404nh1aag221bc7h"; depends=[abind BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot forcats GenomicFeatures GenomicRanges ggplot2 R2jags Rcpp S4Vectors stringr tidyr TxDb_Hsapiens_UCSC_hg19_knownGene XVector]; }; @@ -542,7 +535,6 @@ in with self; { MBASED = derive2 { name="MBASED"; version="1.28.0"; sha256="11rbsaki3nbzil2p8fv7b7biykb60398ayq8sc8drqpiam15myy7"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; }; MBAmethyl = derive2 { name="MBAmethyl"; version="1.28.0"; sha256="1jkvx523spv55qrikg26xc2r9qb72y7kfa161ha6jjm8l57rb6bv"; depends=[]; }; MBCB = derive2 { name="MBCB"; version="1.48.0"; sha256="06idlf8s0a59q45rckflxi5m3i7rgn8lphzyw2fgajvv4df5j7q3"; depends=[preprocessCore tcltk2]; }; - MBQN = derive2 { name="MBQN"; version="2.5.0"; sha256="01pf9wkk3dsxgx1y8mxfxn9m2j2hqipc5kajm7w8g60bj9flg09j"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rpx SummarizedExperiment xml2]; }; MBttest = derive2 { name="MBttest"; version="1.22.0"; sha256="115bkavx4pqy7sh70m5jmghk784f4cqm6z91z5s44m8c00a58vnp"; depends=[gplots gtools]; }; MCbiclust = derive2 { name="MCbiclust"; version="1.18.0"; sha256="1sswmmdkxw41pzqzqxs8rq581jx1wprcmafagnn4n39h2mw00wwy"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; }; MDTS = derive2 { name="MDTS"; version="1.14.0"; sha256="124ixdshragwgnr4rz5qii2j0j74ybm5h8y3k2h1kba56632ff1s"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; }; @@ -562,7 +554,7 @@ in with self; { MLSeq = derive2 { name="MLSeq"; version="2.12.0"; sha256="0z722cbbvkkfpzli47n9dhyj3n02gibffy1l06imwvzxcvahcfyj"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma pamr plyr sSeq SummarizedExperiment testthat VennDiagram xtable]; }; MMAPPR2 = derive2 { name="MMAPPR2"; version="1.8.0"; sha256="1fl8dmbxr407f0vzv4q3jpaia28igzqxjb6azbck7zgn64wh5i3c"; depends=[Biobase BiocGenerics BiocParallel data_table dplyr ensemblVEP GenomeInfoDb GenomicRanges gmapR IRanges magrittr Rsamtools S4Vectors stringr tidyr VariantAnnotation VariantTools]; }; MMDiff2 = derive2 { name="MMDiff2"; version="1.22.0"; sha256="1a74q87mlf1pvgy47gyncllsdz460iyk1nrh4m75jywhbxjf36z0"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; }; - MMUPHin = derive2 { name="MMUPHin"; version="1.8.0"; sha256="00gi53nm19q1282lk435mvm908ldslfcqs70fbz69ysxp6a4qv9v"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor tidyr]; }; + MMUPHin = derive2 { name="MMUPHin"; version="1.8.1"; sha256="161s7505hyacn9632yaq8a0arqac1g11vbz4awjrhqjlma12c9m1"; depends=[cowplot dplyr fpc ggplot2 igraph Maaslin2 metafor tidyr]; }; MODA = derive2 { name="MODA"; version="1.20.0"; sha256="00v40gsp1x5gbjg4ilnsjq1j512lwl3sbhqmavyxs20i8c8xjcqf"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; }; MOFA2 = derive2 { name="MOFA2"; version="1.4.0"; sha256="0vl2ffvh9nsdgw94yavkdkkhihpcb8fdbn3f19aygmwbfg78j3w9"; depends=[basilisk corrplot cowplot DelayedArray dplyr forcats ggplot2 ggrepel HDF5Array magrittr pheatmap RColorBrewer reshape2 reticulate rhdf5 Rtsne stringi tidyr uwot]; }; MOGAMUN = derive2 { name="MOGAMUN"; version="1.4.0"; sha256="0jq863ql6ydykrbriw5h6ibinchkhsgxq8908gyg5f5jl2sgc8pc"; depends=[BiocParallel igraph RCy3 RUnit stringr]; }; @@ -577,15 +569,14 @@ in with self; { MSnID = derive2 { name="MSnID"; version="1.28.0"; sha256="0dks5h3vp9ly8x24px2rl5blqicxybpxjnxvg2p1bwq8zvjkm38p"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics BiocStyle Biostrings data_table doParallel dplyr foreach ggplot2 iterators msmsTests MSnbase mzID mzR ProtGenerics purrr R_cache Rcpp reshape2 rlang RUnit stringr tibble xtable]; }; MSnbase = derive2 { name="MSnbase"; version="2.20.4"; sha256="0d3b0i154dyz1wvy2jwf5831bzbmalw7rzvxj8rd7658zjhghgzc"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS MsCoreUtils mzID mzR pcaMethods plyr ProtGenerics Rcpp S4Vectors scales vsn XML]; }; MSstats = derive2 { name="MSstats"; version="4.2.0"; sha256="1i36a0vhqb2sjllyh6ascfm5fbzf8awazbk1vjq5n8mh2cq72ri9"; depends=[checkmate data_table ggplot2 ggrepel gplots limma lme4 marray MASS MSstatsConvert preprocessCore Rcpp RcppArmadillo survival]; }; - MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.4.0"; sha256="0p44g7kv2zyknmiki94w0v4zq1qpa2ly17hbfqkfy9c1xql7b38g"; depends=[checkmate data_table log4r stringi]; }; + MSstatsConvert = derive2 { name="MSstatsConvert"; version="1.4.1"; sha256="0n8dhc8x9z9n3j91zac67asqgx6q6ikwhcpd56h5x1rhggy8s5db"; depends=[checkmate data_table log4r stringi]; }; MSstatsLOBD = derive2 { name="MSstatsLOBD"; version="1.2.0"; sha256="0d78hd9ip2amkj5pjmwy376qhzfd46wqmzl38rbm52d946c69sb8"; depends=[ggplot2 minpack_lm Rcpp]; }; MSstatsLiP = derive2 { name="MSstatsLiP"; version="1.0.0"; sha256="1vf3f3yd9sgaqs9asq1x2819wkj2x68086g8hag1ln6q7q5j0xws"; depends=[Biostrings checkmate data_table dplyr factoextra ggplot2 ggpubr gridExtra MSstats MSstatsConvert MSstatsPTM purrr Rcpp scales stringr tibble tidyr tidyverse]; }; MSstatsPTM = derive2 { name="MSstatsPTM"; version="1.4.2"; sha256="1g4m2z9hw86w7fj0539jkfjwjdx47kp4lhy9xa7032dr4aiwkvbh"; depends=[Biostrings checkmate data_table dplyr ggplot2 ggrepel gridExtra MSstats MSstatsConvert MSstatsTMT Rcpp stringr]; }; MSstatsQC = derive2 { name="MSstatsQC"; version="2.12.0"; sha256="087lr0maf5kpl642kvvkd9pyakqxy152rzhvrlaj0rxbrfqgxnsw"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics]; }; MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.14.0"; sha256="0ygw1zrq219grfy6h650icai9khx49fvdbby5cyydrqbp8m64w77"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly shiny]; }; MSstatsSampleSize = derive2 { name="MSstatsSampleSize"; version="1.8.0"; sha256="0ckdy0qy2s2rvh4ijdddkk9calf1s9s0hr52y0kpgr4mb5zrl0jp"; depends=[BiocParallel caret ggplot2 gridExtra MSstats reshape2]; }; - MSstatsTMT = derive2 { name="MSstatsTMT"; version="2.2.0"; sha256="0bx96v57lhr8mmvy30cpmbr3mc4ykqwjvqld5gvc01f0h79x8545"; depends=[checkmate data_table ggplot2 limma lme4 lmerTest MSstats MSstatsConvert]; }; - MSstatsTMTPTM = derive2 { name="MSstatsTMTPTM"; version="1.1.2"; sha256="16qnddwhwhjjfr5akdrmp93gkxq2r41s82hb1blbz47lwbj5kaj5"; depends=[dplyr ggplot2 gridExtra MSstatsTMT Rcpp reshape2 stringr]; }; + MSstatsTMT = derive2 { name="MSstatsTMT"; version="2.2.7"; sha256="158s2hdnxlaxcpvybg1r5n89qyhj1rvzvxhp02mc2v4m27rw256n"; depends=[checkmate data_table ggplot2 limma lme4 lmerTest MSstats MSstatsConvert]; }; MVCClass = derive2 { name="MVCClass"; version="1.68.0"; sha256="088gzh33vjkjf78xczqfs89pyg0k7c3533yfvijqxl84ni2ky78z"; depends=[]; }; MWASTools = derive2 { name="MWASTools"; version="1.18.0"; sha256="0i8880nb6y7sanb9w8cwvd69990p1zmfyi3d98259hl2ly65zywj"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; }; Maaslin2 = derive2 { name="Maaslin2"; version="1.8.0"; sha256="08zncj3ywc5pcywi3zgqvvlmqgp9j165b3vrkipvwv15b647jqvp"; depends=[biglm car chemometrics cplm data_table dplyr edgeR ggplot2 glmmTMB hash lme4 lmerTest logging lpsymphony MASS metagenomeSeq optparse pbapply pcaPP pheatmap pscl robustbase vegan]; }; @@ -593,7 +584,7 @@ in with self; { MassArray = derive2 { name="MassArray"; version="1.46.0"; sha256="1m3a0h5jmjifm16z9l37rij00jka0k22qryq0lmhvfmidzvn7pbf"; depends=[]; }; MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.60.0"; sha256="1icqyxkx5a9y3wahkxpxngw85c7l4hih1ym9nwwn9qy93pnw1zi4"; depends=[waveslim]; }; MatrixGenerics = derive2 { name="MatrixGenerics"; version="1.6.0"; sha256="1s75p8rrmj24r0vcbaiyw8xg8y84j388mv6iawai7pypfcl8s1z3"; depends=[matrixStats]; }; - MatrixQCvis = derive2 { name="MatrixQCvis"; version="1.2.0"; sha256="0isahwrq232fkls7bsjlnsfi2q1yimfx61k7as8in82a5jf56rs1"; depends=[ComplexHeatmap dplyr ggplot2 Hmisc htmlwidgets impute imputeLCMD limma openxlsx pcaMethods plotly proDA rlang rmarkdown Rtsne S4Vectors shiny shinydashboard shinyhelper shinyjs SummarizedExperiment tibble tidyr umap UpSetR vegan vsn]; }; + MatrixQCvis = derive2 { name="MatrixQCvis"; version="1.2.2"; sha256="1czw4v7dyggk6dkhvqsx01wd5rp9rds3h4g9dbycgb9gz5qmza0h"; depends=[ComplexHeatmap dplyr ggplot2 Hmisc htmlwidgets impute imputeLCMD limma openxlsx pcaMethods plotly proDA rlang rmarkdown Rtsne S4Vectors shiny shinydashboard shinyhelper shinyjs SummarizedExperiment tibble tidyr umap UpSetR vegan vsn]; }; MatrixRider = derive2 { name="MatrixRider"; version="1.26.0"; sha256="0mv0w3m7waqfm8gy39hmdn00p6cq0a0ndr01scfg1js29jm6sgc2"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; }; MeSHDbi = derive2 { name="MeSHDbi"; version="1.30.0"; sha256="0m4vak1sqh28dz4s2i3nhvhpns024kqnapqa6ibqq0spac8fvknr"; depends=[AnnotationDbi Biobase RSQLite]; }; MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.66.0"; sha256="119d7wz374vshg89p72qbnnxwdk32h4rhz8ay505vnnqkyyiw5ag"; depends=[]; }; @@ -602,14 +593,13 @@ in with self; { MesKit = derive2 { name="MesKit"; version="1.4.0"; sha256="1bz5krwx8v63s9mzbxivkj88vp0f1i3xk4mplkhra8wrn5kc7qvf"; depends=[AnnotationDbi ape Biostrings circlize ComplexHeatmap cowplot data_table dplyr ggplot2 ggrepel ggridges IRanges mclust phangorn pracma RColorBrewer S4Vectors tidyr]; }; MetCirc = derive2 { name="MetCirc"; version="1.24.0"; sha256="0wgf6l6ficl4456sa56ccjgj4z9iwp94ar2dhqjyjqz5fxdz4cvk"; depends=[amap circlize ggplot2 MSnbase S4Vectors scales shiny]; }; MetID = derive2 { name="MetID"; version="1.12.0"; sha256="08n0b76vzv5zlcw0icc2155wbyik2r7x43gf7rxj929l9yx213py"; depends=[ChemmineR devtools igraph Matrix stringr]; }; - MetNet = derive2 { name="MetNet"; version="1.12.0"; sha256="1h8n595qz0wjg4mx4wccmxz7j9wlkqzbg8c2a30gkhlwknc3k8qh"; depends=[BiocParallel bnlearn dplyr GENIE3 ggplot2 mpmi parmigene ppcor psych rlang S4Vectors stabs SummarizedExperiment tibble tidyr]; }; + MetNet = derive2 { name="MetNet"; version="1.12.1"; sha256="0s54q5q9lw2aljdvy5ab4f9j52jiji582mfa0n26mcv8waq39r4i"; depends=[BiocParallel bnlearn dplyr GENIE3 ggplot2 mpmi parmigene ppcor psych rlang S4Vectors stabs SummarizedExperiment tibble tidyr]; }; MetaCyto = derive2 { name="MetaCyto"; version="1.16.0"; sha256="0rhxnj7s01mvfg6bnrx86qm88dihzcivz66z0l52qvc13q38zxv7"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; }; MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.14.0"; sha256="16j9xx7hka13shih9cb3l49vd06ay83pg434lxz0pkdl3zlfhkak"; depends=[beanplot dplyr ggplot2 gplots igraph Matrix matrixStats RColorBrewer SingleCellExperiment SummarizedExperiment tibble tidyr]; }; MetaVolcanoR = derive2 { name="MetaVolcanoR"; version="1.8.0"; sha256="178wva1km2j53yr3j49pzahsixqlcln750l433vzl111p7db1xc6"; depends=[cowplot data_table dplyr ggplot2 htmlwidgets metafor metap plotly rlang tidyr topconfects]; }; Metab = derive2 { name="Metab"; version="1.28.0"; sha256="1syd548djqcmx8d094mzgj4mw9zzfq2sn9fqxm4z2kpgzqnmy400"; depends=[pander svDialogs xcms]; }; MetaboCoreUtils = derive2 { name="MetaboCoreUtils"; version="1.2.0"; sha256="1srmpyccpdqxxlwq68d03yddb74a3kb6yw6yb6v92mpfal1qgdss"; depends=[MsCoreUtils stringr]; }; MetaboSignal = derive2 { name="MetaboSignal"; version="1.24.0"; sha256="1rn6i6masadz5y2lrhjfw2rkfri25rnfnx0gxg9pqsg523bz2plb"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; }; - MethCP = derive2 { name="MethCP"; version="1.7.0"; sha256="1smhwmrgckgivf6xfk54sz197cw1mar95chzkrfpf4wxw3jzbbkn"; depends=[BiocParallel bsseq DNAcopy DSS GenomeInfoDb GenomicRanges IRanges methylKit S4Vectors]; }; MethPed = derive2 { name="MethPed"; version="1.22.0"; sha256="1a48yhnaw0lxb9cj0ywd59j7yf109bii0qq7d8v9rl9l1l4apmy8"; depends=[Biobase randomForest]; }; MethReg = derive2 { name="MethReg"; version="1.4.0"; sha256="1axqcza16r7wqnd78bdzh2sv5yi00ikymawkq0y2spcafb85facr"; depends=[DelayedArray dplyr GenomicRanges ggplot2 ggpubr IRanges MASS Matrix plyr progress pscl readr rlang S4Vectors sesameData sfsmisc stringr SummarizedExperiment tibble tidyr]; }; MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.26.0"; sha256="1n5gsizg9cfq2mi2v7f81ika423ci7vdgddnlxj5x8vszn5jfavk"; depends=[Biostrings gplots seqinr stringr]; }; @@ -621,26 +611,26 @@ in with self; { MiPP = derive2 { name="MiPP"; version="1.66.0"; sha256="1m42rv20f9cwnr97ckx4lm193zf0kjr2v33fisymyaq5rrl7ppfn"; depends=[Biobase e1071 MASS]; }; MiRaGE = derive2 { name="MiRaGE"; version="1.36.0"; sha256="10laq0b1acsirykb5cjxlpj91lqvmhsd3ammk331njaaczh4mjrx"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; }; MicrobiomeProfiler = derive2 { name="MicrobiomeProfiler"; version="1.0.0"; sha256="13awswgm1n30fy73xxlph5aay8a4nkb1gjjzhqy9w7djpm99nw8g"; depends=[clusterProfiler config DT enrichplot ggplot2 golem htmltools magrittr shiny shinycustomloader shinyWidgets]; }; - MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.6.4"; sha256="0vfmsdbn5czz90kg6mzgrfgrv1y5l9vxplj1j17k0s19z525w1kj"; depends=[ape Biostrings coin dplyr dtplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree ggtreeExtra magrittr MASS patchwork pillar rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; + MicrobiotaProcess = derive2 { name="MicrobiotaProcess"; version="1.6.5"; sha256="065axmzs5nzbfm85aah6a5gyp5clffndml26h62fhs0i2msiz3j9"; depends=[ape Biostrings coin dplyr dtplyr foreach ggplot2 ggrepel ggsignif ggstar ggtree ggtreeExtra magrittr MASS patchwork pillar rlang SummarizedExperiment tibble tidyr tidyselect tidytree treeio vegan zoo]; }; MineICA = derive2 { name="MineICA"; version="1.34.0"; sha256="00pbhbz44dx5gfzzf1drwny4a779zxk4hjavb1fkpg15cm7c152x"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; }; MinimumDistance = derive2 { name="MinimumDistance"; version="1.38.0"; sha256="077prww1k374czkd8dlpy081ki101vpl2gpi4dmjbzzq5q45ld7f"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice MatrixGenerics matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; }; ModCon = derive2 { name="ModCon"; version="1.2.0"; sha256="1pgvkscvsacm7ag6yyqlpxs6c5vyb3hlmk6gzkiarsc1b29iqhm4"; depends=[data_table]; }; Modstrings = derive2 { name="Modstrings"; version="1.10.0"; sha256="0lnfvv8k0ffpf72zvhxy6831mgr4gajd4miad8rjzaajhqndr2yf"; depends=[BiocGenerics Biostrings crayon GenomicRanges IRanges S4Vectors stringi stringr XVector]; }; MoonlightR = derive2 { name="MoonlightR"; version="1.20.0"; sha256="1sxdalili8vkp07fn558pcg3azi3v1gqjp6h9cvv1cxdcnjrykkh"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; }; MotifDb = derive2 { name="MotifDb"; version="1.36.0"; sha256="0a2zg26zzk7bj5c33mbwl8dx9lh1hns8q8kwp09rbfjdichv7425"; depends=[BiocGenerics Biostrings GenomicRanges IRanges rtracklayer S4Vectors splitstackshape]; }; - MouseFM = derive2 { name="MouseFM"; version="1.4.1"; sha256="1b80syai2wj9xg3ivxnjqkb1nwkfwmkrm40j7g085fdmdd2r08q1"; depends=[biomaRt curl data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gtools httr IRanges jsonlite reshape2 rlist scales tidyr]; }; + MouseFM = derive2 { name="MouseFM"; version="1.4.2"; sha256="0pjqzf10541qd651m26l3265q01g1nziajy8428n1lwn9h2n74ai"; depends=[biomaRt curl data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gtools httr IRanges jsonlite reshape2 rlist scales tidyr]; }; MsBackendMassbank = derive2 { name="MsBackendMassbank"; version="1.2.0"; sha256="10dgck0rwzfxzlbdf8fclrci6858iqbl9g690fva4zsjllzykbl5"; depends=[BiocParallel DBI IRanges MsCoreUtils ProtGenerics S4Vectors Spectra]; }; MsBackendMgf = derive2 { name="MsBackendMgf"; version="1.2.0"; sha256="0p7lmiijxgms01qsrgih9r8y5q355w67nqmpj5l70c0b52cv3ri9"; depends=[BiocParallel IRanges MsCoreUtils S4Vectors Spectra]; }; MsBackendRawFileReader = derive2 { name="MsBackendRawFileReader"; version="1.0.0"; sha256="0gg71a5y6m46xnm45cmkjqbss4c416v8k8s21yp3qids7zc36izi"; depends=[BiocParallel IRanges MsCoreUtils rawrr S4Vectors Spectra]; }; - MsCoreUtils = derive2 { name="MsCoreUtils"; version="1.6.0"; sha256="1w8d1v2r3plwwcz23zhbpvklhapf2a6x3xmglyh4sh6sy9ynkgrv"; depends=[clue MASS Rcpp S4Vectors]; }; + MsCoreUtils = derive2 { name="MsCoreUtils"; version="1.6.2"; sha256="0614a830gf676ck8j5lkm04158pfvhjb61p3xfdd69gg3d44mk1d"; depends=[clue MASS Rcpp S4Vectors]; }; MsFeatures = derive2 { name="MsFeatures"; version="1.2.0"; sha256="020ifrijlzdd3qk4bhd9z4knj5d87ildrkl3wcmxvwkvs9rbh8rq"; depends=[MsCoreUtils ProtGenerics SummarizedExperiment]; }; Mulcom = derive2 { name="Mulcom"; version="1.44.0"; sha256="0s03qi0288fzzby5iyzgy4rarrxfxcyp6434755268vzz2s6pyj5"; depends=[Biobase fields]; }; MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.20.0"; sha256="1h3b8vqlbd04amjprxd1814zksdrbi01a0xn3906vkbqi43hfyn9"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; }; MultiBaC = derive2 { name="MultiBaC"; version="1.4.0"; sha256="0pwg6zmrfqrzra1r6ai68ya5fjf6dy2sl035xnxl617iii96jada"; depends=[ggplot2 Matrix MultiAssayExperiment plotrix ropls]; }; MultiDataSet = derive2 { name="MultiDataSet"; version="1.22.0"; sha256="17asldnxqvp3sijx7nbi2lbbgnq4iq8z72qlg9080sm5lga1yy1s"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; }; MultiMed = derive2 { name="MultiMed"; version="2.16.0"; sha256="1dkvvrvjfc04ad48zywbrmbvm1lcnni6rvvl9gdax11y9lz19341"; depends=[]; }; - MungeSumstats = derive2 { name="MungeSumstats"; version="1.2.0"; sha256="06n1nxk2hz9gx6wwz0wljxjhyjz3j4njjdwy0vx7zai7rzdv0211"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges googleAuthR httr jsonlite magrittr R_utils RCurl rtracklayer stringr VariantAnnotation]; }; - MutationalPatterns = derive2 { name="MutationalPatterns"; version="3.4.0"; sha256="1n9rakj57yf17hay1bzvwc2h761yijmlflb3crg1bzwvmn32yhsl"; depends=[BiocGenerics Biostrings BSgenome cowplot dplyr GenomeInfoDb GenomicRanges ggalluvial ggdendro ggplot2 IRanges magrittr NMF pracma purrr RColorBrewer S4Vectors stringr tibble tidyr VariantAnnotation]; }; + MungeSumstats = derive2 { name="MungeSumstats"; version="1.2.3"; sha256="04lv8yqpjwa6p9n6jpd9mpnnn0r1yv8b6rig6w1zgmhi31cigz7j"; depends=[Biostrings BSgenome data_table dplyr GenomeInfoDb GenomicRanges googleAuthR httr jsonlite magrittr R_utils RCurl rtracklayer stringr VariantAnnotation]; }; + MutationalPatterns = derive2 { name="MutationalPatterns"; version="3.4.1"; sha256="0i6fq6736gvrqn45r7nrhl0ns45qwj1bl4yc6qlalw2g46mjxf6k"; depends=[BiocGenerics Biostrings BSgenome cowplot dplyr GenomeInfoDb GenomicRanges ggalluvial ggdendro ggplot2 IRanges magrittr NMF pracma purrr RColorBrewer S4Vectors stringr tibble tidyr VariantAnnotation]; }; NADfinder = derive2 { name="NADfinder"; version="1.18.0"; sha256="0glcjxgydj2k7h4963fl465y398xqvq4g393ainvwcgz77kx4sk0"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; }; NBAMSeq = derive2 { name="NBAMSeq"; version="1.10.0"; sha256="1him4qg3xmgisl3jsws690ciknvj2876xn8n9gxc8l08cihfminf"; depends=[BiocParallel DESeq2 genefilter mgcv S4Vectors SummarizedExperiment]; }; NBSplice = derive2 { name="NBSplice"; version="1.12.0"; sha256="12i5zqzxqzh4rfqh02mf2lr9k7xsz1hb945lcng0fc01l7dawd0a"; depends=[BiocParallel car edgeR ggplot2 MASS mppa reshape2]; }; @@ -680,7 +670,7 @@ in with self; { OmicCircos = derive2 { name="OmicCircos"; version="1.32.0"; sha256="1lkncbdq93azp1gv0z4bwdi6l1gpywm096hhn45q7w6f0dy5ydqs"; depends=[GenomicRanges]; }; OmicsLonDA = derive2 { name="OmicsLonDA"; version="1.10.0"; sha256="1vdnpsbpm4zyc17nah5qnlw66bihc7svqvbwgbxmyfp84c2vbxjy"; depends=[BiocGenerics BiocParallel ggplot2 gss plyr pracma SummarizedExperiment zoo]; }; Omixer = derive2 { name="Omixer"; version="1.4.0"; sha256="1pdsxcih642csqga7wy93bbhib2v08pywa8aw67zy7p62hvrxwim"; depends=[dplyr forcats ggplot2 gridExtra magrittr readr stringr tibble tidyselect]; }; - OmnipathR = derive2 { name="OmnipathR"; version="3.2.5"; sha256="0kmkbgkn6dw4jc0kd8p6pb2qvwyz1is24qld22h018v4rry3xa9s"; depends=[checkmate crayon curl digest dplyr httr igraph jsonlite later logger magrittr progress purrr rappdirs readr readxl rlang stringr tibble tidyr tidyselect xml2 yaml]; }; + OmnipathR = derive2 { name="OmnipathR"; version="3.2.8"; sha256="0vr16ar3rbjsfw4qz2g86lbhvmqwgq0vcahc6vrc4d9rdjxwg6sb"; depends=[checkmate crayon curl digest dplyr httr igraph jsonlite later logger magrittr progress purrr rappdirs readr readxl rlang stringr tibble tidyr tidyselect xml2 yaml]; }; OncoScore = derive2 { name="OncoScore"; version="1.22.0"; sha256="0pva48qjbxibgk2wxpaxr4xfq9i8dxbml418wx2nrjj20dn2dhcv"; depends=[biomaRt]; }; OncoSimulR = derive2 { name="OncoSimulR"; version="3.2.0"; sha256="0dcx1qg42pxlcdpl07f53zkk32qpa8hd7fzdz5acvq3zm8yjmhlk"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph RColorBrewer Rcpp Rgraphviz smatr stringr]; }; OpenStats = derive2 { name="OpenStats"; version="1.6.0"; sha256="17gvfvii7z8w9l6w5p0i05374d6sw704w627fnasbrcmkfqnvwka"; depends=[AICcmodavg car Hmisc jsonlite knitr MASS nlme rlist summarytools]; }; @@ -713,7 +703,7 @@ in with self; { PSEA = derive2 { name="PSEA"; version="1.28.0"; sha256="14whd775m4pvf0mggrdw0jyz5wrhqdyj647qvrnkjnvnfkhivh1a"; depends=[Biobase MASS]; }; PSICQUIC = derive2 { name="PSICQUIC"; version="1.32.0"; sha256="0zqz9jyca75ahmkds61cl03i68n3v25n7nmfwc9niv23ikp18pj4"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; }; PWMEnrich = derive2 { name="PWMEnrich"; version="4.30.0"; sha256="16nphxfmfrxpf6w4xccpr132a7jz34nhjv0rg58n6n7kfsf9h4k7"; depends=[BiocGenerics Biostrings evd gdata S4Vectors seqLogo]; }; - PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.22.0"; sha256="0rhx2jc5kc9bl00v16frh8b4075n0jqn4s37pkvqp3ypcbqws32d"; depends=[FindMyFriends igraph jsonlite pcaMethods shiny]; }; + PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.22.0"; sha256="0rhx2jc5kc9bl00v16frh8b4075n0jqn4s37pkvqp3ypcbqws32d"; depends=[igraph jsonlite pcaMethods shiny]; }; Path2PPI = derive2 { name="Path2PPI"; version="1.24.0"; sha256="07a0z9islqnla01pmqni4a3l90iq1c4bwhycnarmdhhrcq4ms2v9"; depends=[igraph]; }; PathNet = derive2 { name="PathNet"; version="1.34.0"; sha256="1syd5k54jj74f39z871a9xc5snslmsv6h9f0lacpf8chcpbs47hy"; depends=[]; }; PathoStat = derive2 { name="PathoStat"; version="1.20.0"; sha256="0vaidkwnny60m0qpkraz6cnzmwm344niwk325dyqyc348r99bk1s"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; }; @@ -724,7 +714,7 @@ in with self; { PhenStat = derive2 { name="PhenStat"; version="2.30.0"; sha256="0b423kkbyyjk4ns4pdwh1lag2k0v7wn17h4l4aca3zkjrsf5522n"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; }; PhenoGeneRanker = derive2 { name="PhenoGeneRanker"; version="1.2.0"; sha256="1x5fbipgsiz2ipg9yh2r8wr8w1s6q01vq4149gjjxgx779xz250n"; depends=[doParallel dplyr foreach igraph Matrix]; }; PhosR = derive2 { name="PhosR"; version="1.4.0"; sha256="0ssfvc9qqj25j48srjjissq034f7giddx45w236yssaynw3ykslr"; depends=[BiocGenerics circlize dendextend dplyr e1071 GGally ggdendro ggplot2 ggpubr ggtext igraph limma network pcaMethods pheatmap preprocessCore RColorBrewer reshape2 rlang ruv S4Vectors SummarizedExperiment tidyr]; }; - PhyloProfile = derive2 { name="PhyloProfile"; version="1.8.5"; sha256="06ky4bhhmk251j1rfa0l9vsy9zvc99l6b280l7p8zfhj2kbpr6h1"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinyFiles shinyjs xml2 yaml zoo]; }; + PhyloProfile = derive2 { name="PhyloProfile"; version="1.8.6"; sha256="157g1xj5iwyy9zmgd26jwws2qwln79pkn2chg6rmj54kslk1shyg"; depends=[ape BiocStyle bioDist Biostrings colourpicker data_table DT energy ExperimentHub ggplot2 gridExtra OmaDB pbapply plyr RColorBrewer RCurl shiny shinyBS shinyFiles shinyjs xml2 yaml zoo]; }; Pi = derive2 { name="Pi"; version="2.6.0"; sha256="14bpqzwx59shx5467nj0g6wj58qh9zqhy1i9l1n1gk7wd52ig5ql"; depends=[BiocGenerics caret dnet dplyr GenomeInfoDb GenomicRanges ggnetwork ggplot2 ggrepel glmnet igraph IRanges lattice MASS Matrix osfr plot3D purrr randomForest RCircos readr ROCR scales supraHex tibble tidyr]; }; Pigengene = derive2 { name="Pigengene"; version="1.20.0"; sha256="1rdz2d5fy6gpdvzv5vfgxngwkag062i6bvvjqkyflabn0yijjpmi"; depends=[BiocStyle bnlearn C50 clusterProfiler DBI dplyr gdata ggplot2 GO_db graph impute MASS matrixStats openxlsx partykit pheatmap preprocessCore ReactomePA Rgraphviz WGCNA]; }; PloGO2 = derive2 { name="PloGO2"; version="1.6.0"; sha256="0i5b7nfifjx1ywvdq4mhvy3wzdg8cqdcc7sw1awsz9xfnrjnhcdp"; depends=[GO_db GOstats httr lattice openxlsx xtable]; }; @@ -738,13 +728,13 @@ in with self; { ProteoMM = derive2 { name="ProteoMM"; version="1.12.0"; sha256="1y7w6rs11kclh5nipnrh02ny12bgf2rkb2dghqcybl80s6r8m6bm"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; }; ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.24.0"; sha256="0qs5hbx7pww7qxxaimp2xqvs3lwcd41ndls0xcvvlk7pnp4i4sk8"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDb MSnbase mzR RCurl]; }; PubScore = derive2 { name="PubScore"; version="1.6.0"; sha256="0b68pzz9iav2d18w6prpp4h6623mfm4qkp36mmr7jqd1ghgj4nc7"; depends=[dplyr ggplot2 ggrepel igraph intergraph network progress rentrez sna]; }; - PureCN = derive2 { name="PureCN"; version="2.0.1"; sha256="0527sfywa692pvj1kh6xvciryivmvyx1czq502rj3qi3abdqzwl8"; depends=[Biobase BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix mclust RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; + PureCN = derive2 { name="PureCN"; version="2.0.2"; sha256="0hc752ylpd30hjicj76hqf582akdp5ayh1g2rhvc14v2pin452w8"; depends=[Biobase BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix mclust RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; }; Pviz = derive2 { name="Pviz"; version="1.28.0"; sha256="0n5bgnhngb38fgrjbibjs7wvmrglrlsr62c27y7k7rqckyrpv21l"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; }; QDNAseq = derive2 { name="QDNAseq"; version="1.30.0"; sha256="1sza9br8agpdz1k9fn5wisir44sj8v0rk4wbx35d2c2kp9q70pqj"; depends=[Biobase CGHbase CGHcall DNAcopy future_apply GenomicRanges IRanges matrixStats R_utils Rsamtools]; }; QFeatures = derive2 { name="QFeatures"; version="1.4.0"; sha256="1rvdfs50hi4a6i9iah916c0yxl31yljs4k62mr839bi162zg4pj1"; depends=[AnnotationFilter Biobase BiocGenerics igraph IRanges lazyeval MsCoreUtils MultiAssayExperiment plotly ProtGenerics S4Vectors SummarizedExperiment]; }; QSutils = derive2 { name="QSutils"; version="1.12.0"; sha256="1qcxarsk9625xsms0fpmlkrpzfbj4rnd8m03k6h1n08imj6x8z4d"; depends=[ape BiocGenerics Biostrings psych]; }; QUBIC = derive2 { name="QUBIC"; version="1.22.0"; sha256="0arhrnn9mfcb3jppkxvv4a1g9rpziv53y9scin2gsk1qrqk17gfa"; depends=[biclust Matrix Rcpp RcppArmadillo]; }; - Qtlizer = derive2 { name="Qtlizer"; version="1.8.0"; sha256="1a9fq4qv9qsgfkddpxdgl0m879aprf1sijmys83lrx834kggzy02"; depends=[curl GenomicRanges httr stringi]; }; + Qtlizer = derive2 { name="Qtlizer"; version="1.8.1"; sha256="0jbk7jmxvxnya2myh0i6syii8cxk61fx5j431vk9rq4dcdylzxcs"; depends=[curl GenomicRanges httr stringi]; }; QuartPAC = derive2 { name="QuartPAC"; version="1.26.0"; sha256="01v4icdwfx9l1md2wxcwh3qn8m7lc133slwdlssa0f1h6r2f7w0g"; depends=[data_table GraphPAC iPAC SpacePAC]; }; QuasR = derive2 { name="QuasR"; version="1.34.0"; sha256="0d292xgaq8d3cdpa9anabda03lis46xc29iw9c5k5i3sj7dcr4g5"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rhtslib Rsamtools rtracklayer S4Vectors ShortRead]; }; QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.28.0"; sha256="0ijig5jmh5b1dzsmibzij1hhdn4b3nz6rvjx9rdvk0rhs7nhh5c1"; depends=[dplyr Rcpp yaml]; }; @@ -848,10 +838,9 @@ in with self; { Ringo = derive2 { name="Ringo"; version="1.58.0"; sha256="0bjsyp6gsdgny0jg363z46sihqmv0xka7mzzkv1gjhiyk7zh8gs6"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; }; Risa = derive2 { name="Risa"; version="1.36.0"; sha256="0fmdsl86swj1sv6j4g3ljbcxp6xqnnxjpzqabjyzbicl3flmqcyv"; depends=[affy Biobase biocViews Rcpp xcms]; }; Rmagpie = derive2 { name="Rmagpie"; version="1.50.0"; sha256="0yn1v4z25ifb00xg3mp0ajskv8502yl317pj2j04ax62qny95ykg"; depends=[Biobase e1071 kernlab pamr]; }; - RmiR = derive2 { name="RmiR"; version="1.49.0"; sha256="16nwh4a97qvyicm4f102xs52lx8cld0b80fykgil86kkd6v8zlja"; depends=[DBI RmiR_Hs_miRNA]; }; Rmmquant = derive2 { name="Rmmquant"; version="1.12.0"; sha256="0wklqi37jgdfsf26zgfhq0rvb6xvg4v9z197mcwirqp7y1jm8rmm"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; }; RnBeads = derive2 { name="RnBeads"; version="2.12.2"; sha256="042bh4p567xkwqn0hxqji7mk0lhbh0vxdrrhcpya22yyrs1716d0"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; }; - RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.4.0"; sha256="04zf30583wdn2q7wnj3hp81sa1h4dhd6yvl22sj0yxdqw919jvrj"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; }; + RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="2.4.1"; sha256="1rmzgvkf3vpdpjx792lcgk3j0br5mbp36cb0hzz5y10fn8qxyml8"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; }; Rnits = derive2 { name="Rnits"; version="1.28.0"; sha256="0wzg0wq0kyarl6s8lmmd6nkqfvvph46bvd4wxh5zy94zqbad7q0b"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; }; RpsiXML = derive2 { name="RpsiXML"; version="2.36.0"; sha256="19jc5dhwyy2z1cwbvgvw54v7kkbgh7g0wzy4frxv91zdgaj7wmhy"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; }; Rqc = derive2 { name="Rqc"; version="1.28.0"; sha256="0hcxkrfja0gmd8r2llijdvaw2xiiplk037305inimz0qna6w2071"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; }; @@ -885,7 +874,7 @@ in with self; { SIMD = derive2 { name="SIMD"; version="1.12.0"; sha256="0bsp7ma0c9j9k3agxchyp54kp126qjvgmaqgi2flgmgwnmkwwbii"; depends=[edgeR methylMnM statmod]; }; SIMLR = derive2 { name="SIMLR"; version="1.20.0"; sha256="19vhv7j29hiimznazpz986api12ry6pd8cgpkwrnwybr4gdvkm7c"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; }; SISPA = derive2 { name="SISPA"; version="1.24.0"; sha256="1gzcc2vq9wvsh92lp80y0dlsi67bws6ng76ab2a4ak1n2lqhm7ak"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; }; - SLGI = derive2 { name="SLGI"; version="1.54.0"; sha256="03jwdq4k44rys3f773c6l985a6v1bacbdghw97p0qpwspmzra8rs"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice ScISI]; }; + SLGI = derive2 { name="SLGI"; version="1.54.0"; sha256="03jwdq4k44rys3f773c6l985a6v1bacbdghw97p0qpwspmzra8rs"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice]; }; SLqPCR = derive2 { name="SLqPCR"; version="1.60.0"; sha256="1sy722nw7fax0m9nnv2d3gy9g5fc4x2xfar521x7x7psfydmy5b6"; depends=[]; }; SMAD = derive2 { name="SMAD"; version="1.10.0"; sha256="1l0x22cg14aj40039jzw1yl3cncil91nv97y9sqs54ay8rvyr5aj"; depends=[dplyr magrittr Rcpp RcppAlgos tidyr]; }; SMAP = derive2 { name="SMAP"; version="1.58.0"; sha256="03fdxaqsxjdq93xazw8rgv22smdwr0ji1rcf6rk20a0p0wvrdpxh"; depends=[]; }; @@ -909,7 +898,6 @@ in with self; { STROMA4 = derive2 { name="STROMA4"; version="1.18.0"; sha256="10v8kgmx79zd2vgzwij3il80l724sdl0k4a3rm73kd4jw2wvhkrh"; depends=[Biobase BiocParallel cluster matrixStats]; }; SWATH2stats = derive2 { name="SWATH2stats"; version="1.24.0"; sha256="0ifl1y3rs0r2zqkpcpiibyv12mjqz6wxs296f691k1qfz9qvx8kg"; depends=[biomaRt data_table ggplot2 reshape2]; }; SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.48.0"; sha256="1xxz5ggxj10psrz5rm0xjr8mxwc3cfyl9chsa9w2wxrrixypdnah"; depends=[]; }; - ScISI = derive2 { name="ScISI"; version="1.65.0"; sha256="0q3bbfsink5d8xslhp129qwvlq5mdzw8zkv9msd0q8qmkclsbiz1"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; }; Scale4C = derive2 { name="Scale4C"; version="1.16.0"; sha256="0gw89mnnpspi5y03ck8gqinnwbkykmf2k65gxm8m9j4l63gg33m8"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; }; ScaledMatrix = derive2 { name="ScaledMatrix"; version="1.2.0"; sha256="0vz8441gl5gycy1ypybwhq97bnyvhhlg6gxpi1dsdy2c9b6d81kc"; depends=[DelayedArray Matrix S4Vectors]; }; Sconify = derive2 { name="Sconify"; version="1.14.0"; sha256="0dan0nbar8f5x6l7cwlx4f4yycpxj3j3f0xx3nfm8n07g1gbcf04"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; }; @@ -938,7 +926,7 @@ in with self; { SpatialDecon = derive2 { name="SpatialDecon"; version="1.4.3"; sha256="11hb28m7h78cvzz9s545jzssnbxjbhfmdb03rxbvxq1rdh0whljr"; depends=[Biobase GeomxTools Matrix repmis SeuratObject]; }; SpatialExperiment = derive2 { name="SpatialExperiment"; version="1.4.0"; sha256="1jn2xr51hv1pm53pgsilhbwal0bnz7mc17z5plpjxgh7jn9bx4x2"; depends=[BiocFileCache BiocGenerics DropletUtils magick rjson S4Vectors SingleCellExperiment SummarizedExperiment]; }; SpeCond = derive2 { name="SpeCond"; version="1.48.0"; sha256="1mpzf9l7yim59wfg244rzqxm9vb10lp88688p5v2whcv5xx0a34a"; depends=[Biobase fields hwriter mclust RColorBrewer]; }; - Spectra = derive2 { name="Spectra"; version="1.4.1"; sha256="01vaxhk1xz54wxcywnsx8z3qbjchg1i8rv0ks7i2c72sqmamhajc"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; }; + Spectra = derive2 { name="Spectra"; version="1.4.3"; sha256="0dyjczbvyxx86rqw8h2svgx5ridil7nwb7lj675j8vgj5dcn0rza"; depends=[BiocGenerics BiocParallel fs IRanges MsCoreUtils ProtGenerics S4Vectors]; }; SpectralTAD = derive2 { name="SpectralTAD"; version="1.10.0"; sha256="00yx87zkyyzpzkm9slmhs78pqivcfladsrnvh3wwlkgi2rky7qps"; depends=[BiocParallel cluster dplyr GenomicRanges HiCcompare magrittr Matrix PRIMME]; }; SpidermiR = derive2 { name="SpidermiR"; version="1.24.0"; sha256="1mwqfg5vgc262bhjnbhn8yvjgmqyafc9kzln1a5pidpj5gyr757q"; depends=[AnnotationDbi gdata ggplot2 gplots gridExtra httr igraph lattice latticeExtra MAGeCKFlute miRNAtap miRNAtap_db org_Hs_eg_db TCGAbiolinks]; }; SplicingFactory = derive2 { name="SplicingFactory"; version="1.2.0"; sha256="0gdk14591slhwnb6rpnksdirzgd7ga03sqkr3k7wndgk5h6dp2jb"; depends=[SummarizedExperiment]; }; @@ -973,7 +961,7 @@ in with self; { TIN = derive2 { name="TIN"; version="1.26.0"; sha256="07m8q3lgcflmrchpw88y4w62iwq5cxd0sw1lbassvgych7dnq3ks"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; }; TMixClust = derive2 { name="TMixClust"; version="1.16.0"; sha256="1i69q92ss9q2vv6hyxvq8wv55w1937rmda43a8qfblzy0jr5avww"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; }; TNBC_CMS = derive2 { name="TNBC.CMS"; version="1.10.0"; sha256="1iz2jb895hsliavk9g93mvvccla461cmifmsam3qdscj09gfl17x"; depends=[e1071 forestplot GGally ggplot2 ggpubr GSVA pheatmap pracma quadprog R_utils RColorBrewer SummarizedExperiment survival]; }; - TOAST = derive2 { name="TOAST"; version="1.7.1"; sha256="1r0kpk6i1b5r5swp4l5yw8mid719li4yqa82p9kzmgg7z0xxvmaz"; depends=[corpcor EpiDISH limma nnls SummarizedExperiment]; }; + TOAST = derive2 { name="TOAST"; version="1.8.2"; sha256="1j0a3ll0mkp0jgw8hfl8xs5yj4baqjxfvg09zb8sh82jim1my77z"; depends=[corpcor doParallel EpiDISH GGally ggplot2 limma nnls quadprog SummarizedExperiment tidyr]; }; TPP = derive2 { name="TPP"; version="3.22.1"; sha256="0vr8sv22rhhrv63arz33vbkp5i3cwd03bz54qwx3zbdcf5l3snhy"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown stringr tibble tidyr VennDiagram VGAM]; }; TPP2D = derive2 { name="TPP2D"; version="1.10.0"; sha256="183gf3v1nj0nqll817whxdif0kiwscil88ig0vjj1hn3936q59v6"; depends=[BiocParallel doParallel dplyr foreach ggplot2 limma MASS openxlsx RCurl stringr tidyr]; }; TRESS = derive2 { name="TRESS"; version="1.0.0"; sha256="0zmzbpzhcsykbpifs5m8md2lhami0ya7y9sf2rdmadgbx17gvzj7"; depends=[AnnotationDbi GenomicFeatures GenomicRanges IRanges Matrix matrixStats Rsamtools rtracklayer S4Vectors]; }; @@ -1023,7 +1011,6 @@ in with self; { ViSEAGO = derive2 { name="ViSEAGO"; version="1.8.0"; sha256="0chb10y97j7kv00i4wbnkxyd7iwf28ybdnkd4ijsamf7ddl814hq"; depends=[AnnotationDbi AnnotationForge biomaRt data_table dendextend DiagrammeR DT dynamicTreeCut fgsea ggplot2 GO_db GOSemSim heatmaply htmlwidgets igraph plotly processx R_utils RColorBrewer scales topGO UpSetR]; }; VplotR = derive2 { name="VplotR"; version="1.4.0"; sha256="0ahf7nqxymx46w3rs8qq6jpvw41avzmssw7apnax13x9gn29kbg6"; depends=[cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges magrittr RColorBrewer reshape2 Rsamtools S4Vectors zoo]; }; Wrench = derive2 { name="Wrench"; version="1.12.0"; sha256="1vzv7sswijgb8nq58yrc19wlw2nnpjvans86fqqzs4p8wvq8j06n"; depends=[limma locfit matrixStats]; }; - XCIR = derive2 { name="XCIR"; version="1.7.0"; sha256="0n42pw01wv1sk06hby9kwijx6zwaw4lrlpsa0wlkrkf323slkllw"; depends=[biomaRt data_table ggplot2 IRanges readxl S4Vectors seqminer VariantAnnotation]; }; XDE = derive2 { name="XDE"; version="2.40.0"; sha256="0f7liqy2gf6ka7wjj591yi8805m3nn21c440vz9iqsanszxnsi6q"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools mvtnorm RColorBrewer siggenes]; }; XINA = derive2 { name="XINA"; version="1.12.0"; sha256="14j1rn3p7i0rlqkbbg0a6pyhb97ifzvsbw6vfxw9pna7zv7rbhsp"; depends=[alluvial ggplot2 gridExtra igraph mclust plyr STRINGdb]; }; XNAString = derive2 { name="XNAString"; version="1.2.2"; sha256="0rc02n3dijcmfj9dr02zlvqr38vmjy3w2drj2fg8i7yrhqp51a9l"; depends=[Biostrings BSgenome data_table formattable future_apply GenomicRanges IRanges Rcpp S4Vectors stringi stringr]; }; @@ -1069,20 +1056,20 @@ in with self; { antiProfiles = derive2 { name="antiProfiles"; version="1.34.0"; sha256="0h9jvb579vy8744mmhg5m7964f24pwm4v02fivxq0z06ccbm79dm"; depends=[locfit matrixStats]; }; apComplex = derive2 { name="apComplex"; version="2.60.0"; sha256="09014csh7wic7hsjri45ply2fkg93gq7xp4ckaj0yr4invjrw3m3"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; }; apeglm = derive2 { name="apeglm"; version="1.16.0"; sha256="11w4vyc1sllmm5lh42krhidazid78n4s3lhikpy9kk2l57jmifbr"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; }; - appreci8R = derive2 { name="appreci8R"; version="1.12.0"; sha256="10sxxsp1c3mmhf4pgqb71vpj3izy16dcm30gklw5axkv45lkpp7f"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools rsnps S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; + appreci8R = derive2 { name="appreci8R"; version="1.12.1"; sha256="15dp3arq80cmqnbd7qnca7liy5hrmm96f5x9z1y9zkhpr0q6jpgv"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools rsnps S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; }; aroma_light = derive2 { name="aroma.light"; version="3.24.0"; sha256="12qa85hsp8d1xhgn27iymknbhpnp9bd7hsgqxwvp1i8kki06z5hp"; depends=[matrixStats R_methodsS3 R_oo R_utils]; }; arrayMvout = derive2 { name="arrayMvout"; version="1.52.0"; sha256="180bdk6p1lmd24ihc90b8r6dgr0vgclassgzblnwd95ya68a25xq"; depends=[affy affyContam Biobase lumi mdqc parody]; }; arrayQuality = derive2 { name="arrayQuality"; version="1.72.0"; sha256="1qlg9xb17sgxfbsnxqs48qzmxc5fhchv5sszxxafkjd0pbfzkllv"; depends=[gridBase hexbin limma marray RColorBrewer]; }; arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.50.0"; sha256="034xdnqvgwqy1wh17mmjzmhzj0iy8sdx4al0ngdxdfnxcjk4gfny"; depends=[affy affyPLM beadarray Biobase genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG svglite vsn XML]; }; artMS = derive2 { name="artMS"; version="1.12.0"; sha256="0gaxd759zv273jh15l5zifh7k995sx8yda097lhjafdph7jmf0nh"; depends=[AnnotationDbi bit64 circlize cluster corrplot data_table dplyr getopt ggdendro ggplot2 ggrepel gplots limma MSstats openxlsx org_Hs_eg_db pheatmap plotly plyr RColorBrewer scales seqinr stringr tidyr UpSetR VennDiagram yaml]; }; atSNP = derive2 { name="atSNP"; version="1.10.0"; sha256="0yy731ivpcrmjwpljxzvlk7n2pygydw2q58gq90d1midch1nf0lx"; depends=[BiocFileCache BiocParallel BSgenome data_table ggplot2 lifecycle motifStack rappdirs Rcpp testthat]; }; - atena = derive2 { name="atena"; version="1.0.1"; sha256="0v7asl17wvdj5qbss2kpkb2xvkmlxf04f7f1cmkzk8kv0xa9qa1h"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Matrix Rsamtools S4Vectors sparseMatrixStats SQUAREM SummarizedExperiment]; }; + atena = derive2 { name="atena"; version="1.0.5"; sha256="0w593x10xls1ypbagdwb7cpfjfdxcd98rm7c4i09qg5zdrwad476"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Matrix Rsamtools S4Vectors sparseMatrixStats SQUAREM SummarizedExperiment]; }; attract = derive2 { name="attract"; version="1.46.0"; sha256="1vh6wgi6wmjry25khzbq32s67jjn581zjhhfqbl7y2dkfq2fvybf"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; }; autonomics = derive2 { name="autonomics"; version="1.2.0"; sha256="1j0nsbdw7sahy031bvp8pg8a1fg7ql0is65d0mfh8345lbmr29sn"; depends=[abind assertive BiocFileCache BiocGenerics colorspace data_table edgeR ggplot2 ggrepel gridExtra limma magrittr matrixStats MultiAssayExperiment pcaMethods R_utils rappdirs readxl rlang S4Vectors scales stringi SummarizedExperiment tidyr]; }; awst = derive2 { name="awst"; version="1.2.0"; sha256="0qxi4f7ngfsx17q9szhl95bhihcfx36bw4n175zyfdnac6cb9kap"; depends=[SummarizedExperiment]; }; bacon = derive2 { name="bacon"; version="1.22.0"; sha256="13dhma34j9ggryainn4x6qvd3hphpxks5gf0mysia00r9hhpwwlc"; depends=[BiocParallel ellipse ggplot2]; }; ballgown = derive2 { name="ballgown"; version="2.26.0"; sha256="0fiky82arvgzgxrm4bqn74m5kngqpdaqf6ks4cr89nlnhfq0v6rf"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; }; - bambu = derive2 { name="bambu"; version="2.0.3"; sha256="0yfkmihy8gn55hps2cmldhq26f8lp2ad4iyp601rrmim6s7axwsc"; depends=[BiocGenerics BiocParallel data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment tidyr xgboost]; }; + bambu = derive2 { name="bambu"; version="2.0.6"; sha256="049pc2npfzmlxpnypi5gfvick5jq6yj6clwy388ijz9g3b50x5d9"; depends=[BiocGenerics BiocParallel BSgenome data_table dplyr GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment tidyr xgboost]; }; bamsignals = derive2 { name="bamsignals"; version="1.26.0"; sha256="03m3yaagplh7j4q5hp3cfcdqwsnh1pwrlla9cv3ajnfd83s8ncqv"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; }; banocc = derive2 { name="banocc"; version="1.18.0"; sha256="0p5v601j1lkgh9prlvalp3xpqw87xq7ql0bak212443n15pfj3a4"; depends=[coda mvtnorm rstan stringr]; }; barcodetrackR = derive2 { name="barcodetrackR"; version="1.2.0"; sha256="1z7sj2ykp34g9bf0x0s3qavrprbiaksgk5r4hsakb24jjbi65jnh"; depends=[circlize cowplot dplyr ggdendro ggplot2 ggridges magrittr plyr proxy RColorBrewer rlang S4Vectors scales shiny SummarizedExperiment tibble tidyr vegan viridis]; }; @@ -1139,7 +1126,7 @@ in with self; { caOmicsV = derive2 { name="caOmicsV"; version="1.24.0"; sha256="0snr67g9bqwyvrr1gxmgdjhrybgcpl38dwik583752sgdyf84c6p"; depends=[bc3net igraph]; }; cageminer = derive2 { name="cageminer"; version="1.0.0"; sha256="140w8ccm5j5kl3gyn6437a2zqlzf5277k3g3c9i22n1jkdp947yn"; depends=[BioNERO GenomeInfoDb GenomicRanges ggbio ggplot2 ggtext IRanges reshape2]; }; calm = derive2 { name="calm"; version="1.8.0"; sha256="1sq78fv4s6ja9yw84k20zl10pbkk8g2kf38p6nbxkhi4rvz8b5r2"; depends=[mgcv]; }; - canceR = derive2 { name="canceR"; version="1.28.0"; sha256="1iii7r1dg4khplqacr1lncks7iqqvgzqfb5vd84bbw2cvc9dbl63"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; }; + canceR = derive2 { name="canceR"; version="1.28.02"; sha256="00h8jklisp1vapqz8z4l4qk2273p2n33f0sfrgc6gpraiypvqr10"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; }; cancerclass = derive2 { name="cancerclass"; version="1.38.0"; sha256="1kp764g9jms7r95wh58c4d1yli7xfvhfvi50x2s8rzi4bhi3zik6"; depends=[binom Biobase]; }; casper = derive2 { name="casper"; version="2.28.0"; sha256="0z85zq5crf3806c16hv0gpv072k2bf7hdyhq958y33282wybr4zd"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; }; categoryCompare = derive2 { name="categoryCompare"; version="1.38.0"; sha256="1175is4gr6nr393lk5ha2c3rqsdzsl1mfnhkajcym8n0927rx8n8"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; }; @@ -1148,7 +1135,7 @@ in with self; { ccfindR = derive2 { name="ccfindR"; version="1.14.0"; sha256="00xaspkckhnflkaj0wfs06kbz6y6cfshr1mq4zhh7yszppgqflzd"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rdpack Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; }; ccmap = derive2 { name="ccmap"; version="1.20.0"; sha256="1z5lyv7m55wcncjlrqzflmp1jm2580k1pvajj3gjqif8kx477q3d"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; }; ccrepe = derive2 { name="ccrepe"; version="1.30.0"; sha256="05wazs9bv4nlkzb3r98v31w0vpkv4071f9zw9dlh9jd8cm91ppk1"; depends=[infotheo]; }; - ceRNAnetsim = derive2 { name="ceRNAnetsim"; version="1.6.0"; sha256="126wkhzj2f5b691jc34a6cqn2rznv531gg1cqfqs4j7k47hfy0in"; depends=[dplyr furrr future ggplot2 ggraph igraph purrr rlang tibble tidygraph tidyr]; }; + ceRNAnetsim = derive2 { name="ceRNAnetsim"; version="1.6.99"; sha256="1309ccqq3p970p5v0b2syqv91vs2d0svij0xdqzr6g46sazgkrr7"; depends=[dplyr furrr future ggplot2 ggraph igraph purrr rlang tibble tidygraph tidyr]; }; celaref = derive2 { name="celaref"; version="1.12.0"; sha256="0rxcy7sw1l2r8j1sralvqwl7ml2hf6x74qmfam87s6gal021z6qj"; depends=[BiocGenerics DelayedArray dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; }; celda = derive2 { name="celda"; version="1.10.0"; sha256="1qlkkh1h6pjv6rjk5p50iq1dhzn1l6sqnm61y6jlg1hqkdc76wbb"; depends=[circlize ComplexHeatmap data_table dbscan DelayedArray digest doParallel enrichR foreach ggplot2 ggrepel gtable Matrix matrixStats MCMCprecision multipanelfigure plyr RColorBrewer Rcpp RcppEigen reshape2 Rtsne S4Vectors scales scater scran SingleCellExperiment stringr SummarizedExperiment uwot withr]; }; cellHTS2 = derive2 { name="cellHTS2"; version="2.58.0"; sha256="0h5vif8xi7axfh41mmp0b8zm1r07mnlnqq6bp0fkwqyas7gbzahh"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit RColorBrewer splots vsn]; }; @@ -1195,11 +1182,9 @@ in with self; { coMET = derive2 { name="coMET"; version="1.26.0"; sha256="0n4fhhx27qrqs855qjx6ng7xdgcxlv3krj5sy4sxrhsahslad9v4"; depends=[biomaRt colortools corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; }; coRdon = derive2 { name="coRdon"; version="1.12.0"; sha256="1m5k0cp61x50izgpb748h8dh2ab98i3vlsf63lhcvhvirind96fw"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr stringr]; }; codelink = derive2 { name="codelink"; version="1.62.0"; sha256="13ydy59qk5walsifyl8gfd181wbkf1jam3242407fsskw5ia4kfv"; depends=[annotate Biobase BiocGenerics limma]; }; - coexnet = derive2 { name="coexnet"; version="1.15.0"; sha256="1h3l7rjk757qbddyg0p8l21h8z3i4n3ml295lmavszsm9knyc2fk"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; }; cogena = derive2 { name="cogena"; version="1.28.0"; sha256="077cmcsqvc2d26ywm6537l538pnn9473sh3q0z91zvmw0886iava"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2 stringr tibble tidyr]; }; cola = derive2 { name="cola"; version="2.0.0"; sha256="13ibslqhqa0xgg79n3cbgpmzlhf9nhibn4wm4mdcyxarxlqlqrsh"; depends=[BiocGenerics brew circlize clue cluster ComplexHeatmap crayon digest doParallel eulerr foreach GetoptLong GlobalOptions httr impute irlba knitr markdown matrixStats mclust microbenchmark png RColorBrewer Rcpp skmeans xml2]; }; combi = derive2 { name="combi"; version="1.6.0"; sha256="0wca0wjmyr0jfy366b2xqfk56qd1y2s43ccbnhbzmvaj7hafnnbc"; depends=[alabama BB Biobase cobs ggplot2 limma Matrix nleqslv phyloseq reshape2 SummarizedExperiment tensor vegan]; }; - compEpiTools = derive2 { name="compEpiTools"; version="1.27.0"; sha256="0hk3yd7ql91wg9r24r57ybhs1nx6zbd5v199sv7xd91k980n2ay5"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; }; compartmap = derive2 { name="compartmap"; version="1.12.0"; sha256="0dhkrskw1hb2vxq3dkxl6ccf0mxpydszpd7d6lpqrk2x62i7hhk5"; depends=[BiocSingular DelayedArray DelayedMatrixStats GenomicRanges ggplot2 HDF5Array Matrix RaggedExperiment reshape2 RMTstat rtracklayer scales SummarizedExperiment]; }; compcodeR = derive2 { name="compcodeR"; version="1.30.0"; sha256="0793wkv967w5sicg4spx1mw48pgn18rwb7wkcqc98sc7d0fvi1vb"; depends=[caTools edgeR ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; }; conclus = derive2 { name="conclus"; version="1.2.0"; sha256="1c4n4ybm0ppd83ydhxghs5kv93djqxin0ppkg4n6rbjw7m9qx1p2"; depends=[AnnotationDbi Biobase BiocFileCache biomaRt clusterProfiler dbscan doParallel dplyr factoextra foreach fpc GEOquery ggplot2 gridExtra pheatmap Rtsne scales scater scran SingleCellExperiment stringr SummarizedExperiment]; }; @@ -1237,13 +1222,13 @@ in with self; { cycle = derive2 { name="cycle"; version="1.48.0"; sha256="1zcxvf41ick80pi929vabbs632dml2rcxwjzz5z5pvz9ppm70vab"; depends=[Biobase Mfuzz]; }; cydar = derive2 { name="cydar"; version="1.18.0"; sha256="0wsfcwfsm7lf6q13cgcwg189zjabdxnlaqbdb6gh1pk27mh3s70g"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; }; cytoKernel = derive2 { name="cytoKernel"; version="1.0.0"; sha256="1n48bz8ainax53m6d5i5zyjlja3v5nv9vhx45r5746sr9rppbljw"; depends=[ashr BiocParallel circlize ComplexHeatmap data_table dplyr magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; - cytolib = derive2 { name="cytolib"; version="2.6.1"; sha256="16m5w6cp28p4fs2p8c8rjcg1d686xl8mpas816i7zxfh8m0bcqc9"; depends=[BH Rcpp RcppArmadillo RcppParallel Rhdf5lib RProtoBufLib]; }; + cytolib = derive2 { name="cytolib"; version="2.6.2"; sha256="0ycr4wmkfi0rvzwicblkfjgppk72gwwpim0rfiz1s44lycsf4py5"; depends=[BH Rcpp RcppArmadillo RcppParallel Rhdf5lib RProtoBufLib]; }; cytomapper = derive2 { name="cytomapper"; version="1.6.0"; sha256="0vmklch5g82pbhpax2flizglyndhs1dmdq015wclj0a9wyflzn6d"; depends=[BiocParallel DelayedArray EBImage ggbeeswarm ggplot2 HDF5Array matrixStats raster RColorBrewer rhdf5 S4Vectors shiny shinydashboard SingleCellExperiment SummarizedExperiment svglite svgPanZoom viridis]; }; dStruct = derive2 { name="dStruct"; version="1.0.0"; sha256="0sy05n0zgd9d8jm352drw7xbcd37ghxzq7fwc3icm8hgqfx43qyk"; depends=[ggplot2 IRanges purrr reshape2 rlang S4Vectors zoo]; }; daMA = derive2 { name="daMA"; version="1.66.0"; sha256="0m7192md5956mbklw0j7z0b82inr6h0p2c9vvjsmd5ivlbz1zdri"; depends=[MASS]; }; dada2 = derive2 { name="dada2"; version="1.22.0"; sha256="1mj2fiqanr8lp1883bali00la38d9g1krqz9v7f396s1f5x8yll6"; depends=[BiocGenerics Biostrings ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; }; dagLogo = derive2 { name="dagLogo"; version="1.32.0"; sha256="1gqb56zg11cl7ldww15zmn09f1f5i60mshwrv7gsb3yc79zs48s1"; depends=[BiocGenerics biomaRt Biostrings motifStack pheatmap UniProt_ws]; }; - dasper = derive2 { name="dasper"; version="1.4.1"; sha256="03k6gw6csllqysx6mcn8h5a2wq01r3pmk6b0jvqr4iwppn8jspry"; depends=[basilisk BiocFileCache BiocParallel data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyranges readr reticulate rtracklayer S4Vectors stringr SummarizedExperiment tidyr]; }; + dasper = derive2 { name="dasper"; version="1.4.2"; sha256="1c0kz52wwz7b8fxgzj7drs8mqr5r2cl25n58rralqb7mgn926v62"; depends=[basilisk BiocFileCache BiocParallel data_table dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggpubr ggrepel IRanges magrittr megadepth plyranges readr reticulate rtracklayer S4Vectors stringr SummarizedExperiment tidyr]; }; dcGSA = derive2 { name="dcGSA"; version="1.22.0"; sha256="0j697q02zys9brmc7xn1yh7lir7k1m7hlr752ykydqx9qzzw0m77"; depends=[BiocParallel Matrix]; }; dcanr = derive2 { name="dcanr"; version="1.10.0"; sha256="0xrfdwcs4qxgasm318nd2cdqmr9ksaxig1frs8h6a7lg8wvh5f2x"; depends=[circlize doRNG foreach igraph Matrix plyr RColorBrewer reshape2 stringr]; }; dce = derive2 { name="dce"; version="1.2.0"; sha256="0wzi9hv975ib7nvd6qqnlhzfzgx9wydxxs1pkklzzgwlwm4gr971"; depends=[assertthat CombinePValue dplyr edgeR epiNEM expm ggplot2 ggraph glm2 glue graph graphite harmonicmeanp igraph logger MASS Matrix metap mnem naturalsort org_Hs_eg_db pcalg ppcor purrr reshape2 Rgraphviz rlang tidygraph tidyverse]; }; @@ -1285,7 +1270,6 @@ in with self; { dpeak = derive2 { name="dpeak"; version="1.6.0"; sha256="12a1zz8zj0kp2iprnckij98illb9jf2lg4nz144wjlfwiv3mq0y6"; depends=[BSgenome IRanges MASS Rcpp]; }; drawProteins = derive2 { name="drawProteins"; version="1.14.0"; sha256="1imsisl2bwzf3dzhslmlqm6zwzil8a2l8kk7fkkc0dqka63kcwai"; depends=[dplyr ggplot2 httr readr tidyr]; }; drugTargetInteractions = derive2 { name="drugTargetInteractions"; version="1.2.0"; sha256="1jcmkh1rjhk862f6kzqfw9zkk795yiwxq57bxbsqf9kwyykgwq7y"; depends=[AnnotationFilter BiocFileCache biomaRt dplyr ensembldb rappdirs RSQLite S4Vectors UniProt_ws]; }; - dualKS = derive2 { name="dualKS"; version="1.53.0"; sha256="16cfcylmmcj8x2808529lbpm7qbbrxygic0jkaglhqcdxgrqw3rw"; depends=[affy Biobase]; }; dupRadar = derive2 { name="dupRadar"; version="1.24.0"; sha256="06s3661vlsy4n9p59wb8f9gmmwd2kwz0z2ydq2diix0hajz8h5fi"; depends=[Rsubread]; }; dyebias = derive2 { name="dyebias"; version="1.54.0"; sha256="0iha3n4p01gphsp5jn5ypm9b8mfn2dlz1sdz179i5cmycwgg6p7s"; depends=[Biobase marray]; }; easier = derive2 { name="easier"; version="1.0.0"; sha256="1wlpmx9ghbz9ikmw70b0lhsvkbcry5rmrkq8kxm0439wwwfd0ayj"; depends=[arules BiocParallel coin DESeq2 dorothea dplyr easierData ggplot2 ggrepel matrixStats progeny quantiseqr reshape2 rlang ROCR rstatix]; }; @@ -1299,7 +1283,7 @@ in with self; { eisaR = derive2 { name="eisaR"; version="1.6.0"; sha256="1gfcmxdbzpb8rfdk7c1y7jhqanipa6jyxy2cg6f9jsp9x73fs61w"; depends=[BiocGenerics edgeR GenomicRanges IRanges limma S4Vectors SummarizedExperiment]; }; enhancerHomologSearch = derive2 { name="enhancerHomologSearch"; version="1.0.0"; sha256="1v8zgp33kabf5qjf7aklb1lbzsvlh1jv30g0f79djf2i9khcxlkm"; depends=[BiocFileCache BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges httr IRanges jsonlite Matrix motifmatchr Rcpp rtracklayer S4Vectors]; }; enrichTF = derive2 { name="enrichTF"; version="1.10.0"; sha256="0ssjsl5vh0wdq0584yl6c61d8bp5n3qvkgfrqdlpjfwb7b7gh4xv"; depends=[BiocGenerics BSgenome clusterProfiler GenomeInfoDb GenomicRanges ggplot2 ggpubr heatmap3 IRanges JASPAR2018 magrittr motifmatchr pipeFrame R_utils rmarkdown rtracklayer S4Vectors TFBSTools]; }; - enrichplot = derive2 { name="enrichplot"; version="1.14.1"; sha256="0nsx96mkcg0hhg3x8jndzq3xvq9bq7m4yf1b3ry73b17ladx81ch"; depends=[aplot DOSE ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 scatterpie shadowtext yulab_utils]; }; + enrichplot = derive2 { name="enrichplot"; version="1.14.2"; sha256="1rjiqmc32c9gxckgrgbypxpp0m8y0kahvhzvjzymda25xp8zqjs2"; depends=[aplot DOSE ggplot2 ggraph ggtree GOSemSim igraph magrittr plyr purrr RColorBrewer reshape2 scatterpie shadowtext yulab_utils]; }; ensemblVEP = derive2 { name="ensemblVEP"; version="1.36.0"; sha256="1b9i8qv16mrr31qpvvcimcd80nkykky8dygi90jinkzgvkzdxi64"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; }; ensembldb = derive2 { name="ensembldb"; version="2.18.3"; sha256="0rbd8ycvl1aydbd8xcbkhgqxqkrflymgah3wm6nx76csapbzh4q9"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; }; epiNEM = derive2 { name="epiNEM"; version="1.18.0"; sha256="0xs9jzy0d9iv45d5ina7ki79wix96318yp17mxhp1l4vdkpm3fk7"; depends=[BoolNet e1071 graph gtools igraph latex2exp lattice latticeExtra minet mnem pcalg RColorBrewer]; }; @@ -1415,7 +1399,7 @@ in with self; { ggmsa = derive2 { name="ggmsa"; version="1.0.0"; sha256="0w4jqmsa87ijflmyya8fnwmgha6s5ax2r9d67b0a3d7yz3d1kms8"; depends=[aplot Biostrings dplyr ggalt ggforce ggplot2 magrittr R4RNA RColorBrewer seqmagick tidyr]; }; ggspavis = derive2 { name="ggspavis"; version="1.0.0"; sha256="0lm7z8fzvw47zq618lfyxszy42qwhjr71xsyjsygvcl604z68jx0"; depends=[ggplot2 ggside SingleCellExperiment SpatialExperiment SummarizedExperiment]; }; ggtree = derive2 { name="ggtree"; version="3.2.1"; sha256="0qk39gdpy4kznjhmvi25y2spcdj2r1i6mv673vx8dzf66zfs20v8"; depends=[ape aplot dplyr ggfun ggplot2 magrittr purrr rlang scales tidyr tidytree treeio yulab_utils]; }; - ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.4.1"; sha256="1lrnwzpkddc3byag4zyjiqhvkdkln03yq9qrxq0981cp6mai3aq7"; depends=[ggnewscale ggplot2 ggtree rlang]; }; + ggtreeExtra = derive2 { name="ggtreeExtra"; version="1.4.2"; sha256="0c7kf0a5hr63y9w6f09z8dfd3apbhx6i6cd31fvl1wiy977pn2ly"; depends=[ggnewscale ggplot2 ggtree rlang]; }; girafe = derive2 { name="girafe"; version="1.46.0"; sha256="1al296zsp454lap05mh58y5lmrd0bfc4vmwaq5icnna56i4bi9m9"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; }; glmGamPoi = derive2 { name="glmGamPoi"; version="1.6.0"; sha256="1yffzcy910cawz2lzjqg8h1hrjvrkhz3pdif5q352kpzjklr5qjm"; depends=[beachmat BiocGenerics DelayedArray DelayedMatrixStats HDF5Array matrixStats Rcpp RcppArmadillo SummarizedExperiment]; }; glmSparseNet = derive2 { name="glmSparseNet"; version="1.12.0"; sha256="14qyj2jgjapjjznjzhslhcfbyxm9z0p28z8qrjqkxcb5z2hw9arq"; depends=[biomaRt dplyr forcats futile_logger ggplot2 glmnet glue httr loose_rock Matrix MultiAssayExperiment readr reshape2 sparsebn sparsebnUtils stringr SummarizedExperiment survminer]; }; @@ -1443,7 +1427,7 @@ in with self; { gwasurvivr = derive2 { name="gwasurvivr"; version="1.12.0"; sha256="1q31ydns5i8jk4p4731i57f80iwx6qm0r9fka4xd4wdxzk5kps8z"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; }; h5vc = derive2 { name="h5vc"; version="2.28.0"; sha256="0i4p122cavihc29javrgg5ywqn1fkg73hp46hfj3v2qmwakihk4w"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rhtslib Rsamtools S4Vectors]; }; hapFabia = derive2 { name="hapFabia"; version="1.36.0"; sha256="0niwlfy2ljsx1ivdxrpm0f8w75bs03xb2l43dkcm5gclwac2ys1v"; depends=[Biobase fabia]; }; - hca = derive2 { name="hca"; version="1.2.1"; sha256="0yczfbs3w4f4zwv2zq9m58w7xirhjys654g87j643yr1rfixf7l1"; depends=[BiocFileCache digest dplyr httr jsonlite readr tibble tidyr]; }; + hca = derive2 { name="hca"; version="1.2.2"; sha256="0jdn93r48id24n8ha2yn2d256mz446j6hfvn0dz0y1kniff154cc"; depends=[BiocFileCache digest dplyr httr jsonlite readr tibble tidyr]; }; heatmaps = derive2 { name="heatmaps"; version="1.18.0"; sha256="11fi0kzqx6ihvvwc852xhj34xv4aik0zyv47ad4zbhvb1mvxqv8a"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; }; hiAnnotator = derive2 { name="hiAnnotator"; version="1.28.0"; sha256="1hjgn9gszr38q9syjl9qqw3lml5falp08asn01mq4h1m53akwxxv"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; }; hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.30.0"; sha256="02y6gy9h841aag0v88j1g0hw0ckd4zd3agjgvzi9mcmb76zhxz8k"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl sonicLength]; }; @@ -1495,7 +1479,7 @@ in with self; { inveRsion = derive2 { name="inveRsion"; version="1.42.0"; sha256="0205fmv174x23gl5ka8k5j2x1lrwqc31zx7p0ngr9877kbi5idrj"; depends=[haplo_stats]; }; ipdDb = derive2 { name="ipdDb"; version="1.12.0"; sha256="0q4lrhj3l5ayfx1bba9176r2wybpn710yxxrcprgr87h95wqac8v"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; }; isobar = derive2 { name="isobar"; version="1.40.0"; sha256="0njl7b0k5hnwlj060ry6a8zjw035c21d107n0j2fyxg8nx4icqsx"; depends=[Biobase biomaRt distr ggplot2 plyr]; }; - isomiRs = derive2 { name="isomiRs"; version="1.22.0"; sha256="16af3cqdc283bhz1b365hiq7xmkgamggdw8bgsvpqifzssqs2jj1"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics broom cluster cowplot DEGreport DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; + isomiRs = derive2 { name="isomiRs"; version="1.22.1"; sha256="1jzk47dxwk396adc7mzi9pil1dzbs0vjsibgclgs8lggm37dxq93"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics broom cluster cowplot DEGreport DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors stringr SummarizedExperiment tibble tidyr]; }; iterClust = derive2 { name="iterClust"; version="1.16.0"; sha256="0ggr9h3kyyjnfiqwk4w22icg8fg5bln1vygk1ip0badcxk2b6gyw"; depends=[Biobase cluster]; }; iterativeBMA = derive2 { name="iterativeBMA"; version="1.52.0"; sha256="1s86cq9c5a330cpxjpxgj1ibphmfsrxp1dn2gp7n50qkp2pyjsqa"; depends=[Biobase BMA leaps]; }; iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.52.0"; sha256="0jrjyrg2kfmgiybwdglrbfvfziy8i6jnkzb2ddr8z0670bmv8wxw"; depends=[BMA leaps survival]; }; @@ -1511,10 +1495,10 @@ in with self; { les = derive2 { name="les"; version="1.44.0"; sha256="08kahiq7j7xwr9hpynzcnbr3jchdd83iacywrnb03plz5jx22q9n"; depends=[boot fdrtool gplots RColorBrewer]; }; levi = derive2 { name="levi"; version="1.12.0"; sha256="0mn8hcbld16qcdmb35hamg9p1rs7264k25s1bhw2ipcipkjv6fh3"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 rmarkdown shiny shinydashboard shinyjs testthat xml2]; }; lfa = derive2 { name="lfa"; version="1.24.0"; sha256="02b90xjb2lfm86hbsdrvzpv20pijnq78ibz4dwjzqd9v4xhia3wr"; depends=[corpcor]; }; - limma = derive2 { name="limma"; version="3.50.0"; sha256="05ypmax1s6y1nz42bxn61wxhzzw6185q633crzpdcbbz3dz4vgvy"; depends=[]; }; + limma = derive2 { name="limma"; version="3.50.1"; sha256="0plffhwh73k6rkcpyhhzvfgni1kgxg9zmqaf08l8ir6x04fgw8kz"; depends=[]; }; limmaGUI = derive2 { name="limmaGUI"; version="1.70.0"; sha256="0g4bp8ih848kh907ykmn6q1nzwabg5ifqb7123m87wdhrw224xjp"; depends=[limma R2HTML tkrplot xtable]; }; lionessR = derive2 { name="lionessR"; version="1.8.0"; sha256="0n4ky9g2a4n5wisvkj9afkvaqdq4yxfabnx26vrjy8g34dg5dz3l"; depends=[S4Vectors SummarizedExperiment]; }; - lipidr = derive2 { name="lipidr"; version="2.8.0"; sha256="0w300ac15ra2yl3lz05wdg4vy2skxqdmnwljjcldgacgdfs012zb"; depends=[data_table dplyr fgsea forcats ggplot2 imputeLCMD limma magrittr rlang ropls S4Vectors SummarizedExperiment tidyr]; }; + lipidr = derive2 { name="lipidr"; version="2.8.1"; sha256="0a007pbn438ba8zykf99x4lhb5yni5ycsd1wcacj8vmx34g1k0zd"; depends=[data_table dplyr fgsea forcats ggplot2 imputeLCMD limma magrittr rlang ropls S4Vectors SummarizedExperiment tidyr]; }; lisaClust = derive2 { name="lisaClust"; version="1.2.0"; sha256="0n3vwawlmybjbgvgb66pc0if63dn7mqhk74jpskqzv7c6f5nbvdv"; depends=[BiocGenerics BiocParallel class concaveman data_table dplyr ggplot2 purrr S4Vectors spatstat_core spatstat_geom spicyR tidyr]; }; lmdme = derive2 { name="lmdme"; version="1.36.0"; sha256="0wi1lsaix6dgmj69kpm8rg5jbhv2a7r7a4n6zz1zg0q288pzs34s"; depends=[limma pls stemHypoxia]; }; loci2path = derive2 { name="loci2path"; version="1.14.0"; sha256="18wzbsa22ix5q6icr2mmcfijrlv4dg222icyixlpzrcbhc8r42sq"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; }; @@ -1533,14 +1517,14 @@ in with self; { maanova = derive2 { name="maanova"; version="1.64.0"; sha256="1bifi7fzjhc00j8ckifh8vs4l3vxmqfh5kpwd1qgcg8q25hpx7gw"; depends=[Biobase]; }; macat = derive2 { name="macat"; version="1.68.0"; sha256="17jxgq0cblw77anx4kd3gnj1yjffid1iw2yg8kw2wvslzwyrnyn9"; depends=[annotate Biobase]; }; made4 = derive2 { name="made4"; version="1.68.0"; sha256="0jnzxd9dk3ihbjpybb9f43iww1xsz8l85ivav9a4s8zwc8nbwn8c"; depends=[ade4 Biobase gplots RColorBrewer scatterplot3d SummarizedExperiment]; }; - maftools = derive2 { name="maftools"; version="2.10.0"; sha256="1s8w3xwwigz803l81bs9cb2dbvvw5r9z8jjcav1rmh9wm8909nfd"; depends=[data_table RColorBrewer Rhtslib survival zlibbioc]; }; + maftools = derive2 { name="maftools"; version="2.10.05"; sha256="1m38j8b79xdkfaar62gpv2b31g61n6giijffmff8ryicvhkb157k"; depends=[data_table RColorBrewer Rhtslib survival zlibbioc]; }; maigesPack = derive2 { name="maigesPack"; version="1.58.0"; sha256="19xixj4mk4vgh1rvxgnscyz6mx17nyqyhj64pixhz80mwa1w5vdd"; depends=[convert graph limma marray]; }; makecdfenv = derive2 { name="makecdfenv"; version="1.70.0"; sha256="1v4x4x6x65sjdl194adhsz3l2lgcri9mmwix6dvcvd0pb321jpwn"; depends=[affy affyio Biobase zlibbioc]; }; mapscape = derive2 { name="mapscape"; version="1.18.0"; sha256="0cim9svg45glfyli0liphhix2k0864fr0kl9kafv4zigbmfv83jy"; depends=[base64enc htmlwidgets jsonlite stringr]; }; marr = derive2 { name="marr"; version="1.4.0"; sha256="00wq5s68fxp9cdc77frzk6pyim89yk3gk9786g6szx2acbaqas0j"; depends=[dplyr ggplot2 magrittr Rcpp rlang S4Vectors SummarizedExperiment]; }; marray = derive2 { name="marray"; version="1.72.0"; sha256="1la805y8j522vpiazm1z6wpq4ibia9bib5fpiia5mxmpzmqg6gzz"; depends=[limma]; }; martini = derive2 { name="martini"; version="1.14.0"; sha256="0ml5b38ivszn5qyqfi5c8xs43z05xiqhgybqaqxiasfl7rv18ikd"; depends=[igraph Matrix Rcpp RcppEigen snpStats]; }; - maser = derive2 { name="maser"; version="1.12.0"; sha256="1yb0c4jyxanqkzrznqzddhdm0lv3m991irkk0by11sssbqbmpsnd"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; + maser = derive2 { name="maser"; version="1.12.1"; sha256="1axgjckdf88nia8p6bpkxzblqydql4hbnapfspgwb4pv08409537"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; }; maskBAD = derive2 { name="maskBAD"; version="1.38.0"; sha256="1fkzisfa0bazg0n41g9ixzh5xaw34wdkb56dx0ljg8n1dkq28jbn"; depends=[affy gcrma]; }; massiR = derive2 { name="massiR"; version="1.30.0"; sha256="142lidx7j4n1sfizwwlschjc4di2cqz5v1q9p4v4i1xndpdxdwya"; depends=[Biobase cluster diptest gplots]; }; matchBox = derive2 { name="matchBox"; version="1.36.0"; sha256="13i22m51g72jahxpxnfjr1jxbphiihy7yhwhm0ywxra9vmabpknp"; depends=[]; }; @@ -1575,7 +1559,6 @@ in with self; { methylInheritance = derive2 { name="methylInheritance"; version="1.18.0"; sha256="1vz2aww1523h7lrac04sq4p521bbhw4l1cx4j20ijjddd9v5kr45"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; }; methylKit = derive2 { name="methylKit"; version="1.20.0"; sha256="02px46h2ynprss7kwll3i0jz0clrdg0bys70jacd432xw34nm2sx"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust mgcv qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; }; methylMnM = derive2 { name="methylMnM"; version="1.32.0"; sha256="1l87588frvl2cs9gf45axq90xhz94xx825zhm1w0gg7pjxgkwdmb"; depends=[edgeR statmod]; }; - methylPipe = derive2 { name="methylPipe"; version="1.27.0"; sha256="0z2md9n1flzfsgsbzwffn4q6yfcjyj03bg1vi4phcknigbhg1viy"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; }; methylSig = derive2 { name="methylSig"; version="1.6.0"; sha256="0kp1ckxbidwlbv4690g236qhbh9rzjglx8gpmkihq67hfci7537v"; depends=[bsseq DelayedArray DelayedMatrixStats DSS GenomeInfoDb GenomicRanges IRanges S4Vectors]; }; methylclock = derive2 { name="methylclock"; version="1.0.1"; sha256="00j1crflmpk02xxs0gfidrd04s8gaw3l1hiqs7qj522j13ks1q45"; depends=[Biobase devtools dplyr dynamicTreeCut ExperimentHub ggplot2 ggpmisc ggpubr impute methylclockData minfi PerformanceAnalytics preprocessCore quadprog Rcpp RPMM tibble tidyr tidyverse]; }; methylscaper = derive2 { name="methylscaper"; version="1.2.0"; sha256="0ygkx6fs8rjbqp4ry3am7vd3jsqx3nac1z1hdiib2pvgr7b6h1r7"; depends=[BiocParallel Biostrings data_table Rfast seqinr seriation shiny shinyFiles shinyjs SummarizedExperiment]; }; @@ -1591,15 +1574,15 @@ in with self; { miRSM = derive2 { name="miRSM"; version="1.12.0"; sha256="1p6qg1wnill41amv8sppz51b4li8zdlh8fq577fwl6yrp63rp319"; depends=[BiBitR BicARE biclust Biobase dbscan dynamicTreeCut energy fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MatrixCorrelation MCL mclust miRspongeR NMF org_Hs_eg_db PMA ppclust Rcpp rqubic s4vd SOMbrero subspace SummarizedExperiment WGCNA]; }; miRcomp = derive2 { name="miRcomp"; version="1.24.0"; sha256="1kknr5m62ly03p5yzam5c3hwpaky25g3y92h6z3sg7xfjgsd9qpz"; depends=[Biobase KernSmooth miRcompData]; }; miRmine = derive2 { name="miRmine"; version="1.16.0"; sha256="0cx7181dsfclq2dplx1wcgnaqhxlgyfxsi0g4ii82yp1ka5fpml4"; depends=[SummarizedExperiment]; }; - miRspongeR = derive2 { name="miRspongeR"; version="1.20.0"; sha256="06nczhbbvx1dmmwry88057zbvw3dq64qn5mn91ipi5qfnckb84wd"; depends=[clusterProfiler corpcor DOSE igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA survival varhandle]; }; - mia = derive2 { name="mia"; version="1.2.3"; sha256="1la5p4p2m1c4j3i3mzlm0in8vrivkbwrfil597yjlp0z4j9ai481"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS MultiAssayExperiment rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; + miRspongeR = derive2 { name="miRspongeR"; version="1.20.1"; sha256="1xzi7irlgdqnnh9s4qrwv3p7l8y7k44iiqlc8hnyymxfhbymadym"; depends=[clusterProfiler corpcor DOSE igraph linkcomm MCL org_Hs_eg_db Rcpp ReactomePA survival varhandle]; }; + mia = derive2 { name="mia"; version="1.2.7"; sha256="10mk41v88xjk0sanxrdsa6q41j2m5a35b2b9sp993b5xrglxdrlz"; depends=[ape BiocGenerics BiocParallel Biostrings DECIPHER decontam DelayedArray DelayedMatrixStats DirichletMultinomial dplyr IRanges MASS MultiAssayExperiment rlang S4Vectors scater scuttle SingleCellExperiment SummarizedExperiment tibble tidyr TreeSummarizedExperiment vegan]; }; miaSim = derive2 { name="miaSim"; version="1.0.0"; sha256="0870jvqwcg08fyzb4c9qsb6sk7r4sxqzrrfzijd25sdjbqly4zzx"; depends=[deSolve poweRlaw SummarizedExperiment]; }; miaViz = derive2 { name="miaViz"; version="1.2.1"; sha256="02fm69mfdgh8p10ajyxrl55c5f9kwql3a2xniwllv2cic0fcf1xi"; depends=[ape BiocGenerics BiocParallel DelayedArray DirichletMultinomial dplyr ggnewscale ggplot2 ggraph ggtree mia purrr rlang S4Vectors scater SummarizedExperiment tibble tidygraph tidyr tidytree TreeSummarizedExperiment viridis]; }; microRNA = derive2 { name="microRNA"; version="1.52.0"; sha256="0x145alfh8qnbnhahxhfygcqc4xwiiirabl9k9nbcyadc5fawfc1"; depends=[Biostrings]; }; microbiome = derive2 { name="microbiome"; version="1.16.0"; sha256="0j00xbw5gh53bfij8q3q2pa8lwvn3wb23vs9lybvlhjp725h064z"; depends=[dplyr ggplot2 phyloseq reshape2 Rtsne scales tibble tidyr vegan]; }; microbiomeDASim = derive2 { name="microbiomeDASim"; version="1.8.0"; sha256="0g3lnwr5v62lkfz5fwdpjs9lr9vb8h8grqqrvwhyin5xmgkr5lnn"; depends=[Biobase ggplot2 MASS Matrix metagenomeSeq mvtnorm pbapply phyloseq tmvtnorm]; }; microbiomeExplorer = derive2 { name="microbiomeExplorer"; version="1.4.0"; sha256="0ghsv6yf6v3b2xqv6a5r2q0glzajmy5wa3qhsnds6v0gj62v5ycg"; depends=[Biobase biomformat broom car DESeq2 dplyr DT forcats heatmaply knitr limma lubridate magrittr matrixStats metagenomeSeq plotly purrr RColorBrewer readr reshape2 rlang rmarkdown shiny shinycssloaders shinydashboard shinyjs shinyWidgets stringr tibble tidyr vegan]; }; - microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.0.1"; sha256="1q0d3vi0gvxyj7sala385b7xxy6qynq4agmn6lhfgipw05qr1fyk"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC purrr rlang S4Vectors tibble tidyr tidytree yaml]; }; + microbiomeMarker = derive2 { name="microbiomeMarker"; version="1.0.2"; sha256="1caf3cd5rl1kikyf66zjzwfk7w43ix0hh0f98r3y0mipdcp97rfw"; depends=[ALDEx2 ANCOMBC Biobase BiocGenerics biomformat Biostrings caret coin ComplexHeatmap DESeq2 dplyr edgeR ggplot2 ggsignif ggtree IRanges limma magrittr MASS metagenomeSeq multtest patchwork phyloseq plotROC purrr rlang S4Vectors tibble tidyr tidytree yaml]; }; midasHLA = derive2 { name="midasHLA"; version="1.2.0"; sha256="1dnqx9h3qz5p6l19s0nm90a35523cn32ymgg8pri5rc3jfrilv9k"; depends=[assertthat broom dplyr formattable HardyWeinberg kableExtra knitr magrittr MultiAssayExperiment qdapTools rlang S4Vectors stringi SummarizedExperiment tibble]; }; miloR = derive2 { name="miloR"; version="1.2.0"; sha256="1pvd8kdh6mmv10ryq038qwr07w5g0n6pnpchb653i3dixygkgd94"; depends=[BiocNeighbors BiocParallel BiocSingular cowplot dplyr edgeR ggbeeswarm ggplot2 ggraph ggrepel gtools igraph irlba limma Matrix matrixStats patchwork RColorBrewer S4Vectors SingleCellExperiment stringr SummarizedExperiment tibble tidyr]; }; mimager = derive2 { name="mimager"; version="1.18.0"; sha256="0xd5yxbljyxzvdr8y28qk1pl9sy44q9pxkpcfmxphsbf6bvy0d5b"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; }; @@ -1725,10 +1708,8 @@ in with self; { pepStat = derive2 { name="pepStat"; version="1.28.0"; sha256="07k5hilmnjhqcndq6vmibargf7fr0ah4zpcd2mm6656w3xy1ywax"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; }; pepXMLTab = derive2 { name="pepXMLTab"; version="1.28.0"; sha256="0wk502spk5cmhvygnirfywk4dq13imvvbnxy97ak2c011phpaxf1"; depends=[XML]; }; periodicDNA = derive2 { name="periodicDNA"; version="1.4.0"; sha256="1v6rl234qs0la2r7qwiahslw7yr8mppcdcpand2lk8w862k67nda"; depends=[BiocParallel Biostrings BSgenome cowplot GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr rtracklayer S4Vectors zoo]; }; - perturbatr = derive2 { name="perturbatr"; version="1.13.0"; sha256="0ssk8cr42hibn917s2z2nzcdan54c7xiydypbi8f3g4w68q4ly31"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; }; pgca = derive2 { name="pgca"; version="1.18.0"; sha256="1wrp4k0b1sj75yhw799aqcb6dmimza6gvcxkn5ayfn6x3hfifwwl"; depends=[]; }; phantasus = derive2 { name="phantasus"; version="1.14.0"; sha256="0p8xa0jqasgn61qzzva7wrjk8d2xcsn9kd20c4dbc61sg3cxrcir"; depends=[AnnotationDbi assertthat Biobase ccaPP curl DESeq2 fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; }; - phemd = derive2 { name="phemd"; version="1.9.0"; sha256="0hqivlc9hzcfcprng1499nas84fwvgisg8976vsjciyn903355jr"; depends=[Biobase BiocGenerics cluster cowplot destiny ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; }; phenoTest = derive2 { name="phenoTest"; version="1.42.0"; sha256="0ci44hwicvz32sgv6mywawyygd1wzz2bayx6rshwvpmz1mixncq6"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach limma mgcv survival xtable]; }; phenopath = derive2 { name="phenopath"; version="1.18.0"; sha256="1c0cxm3cwxprjkkwimzgjz0h67dykx2jy7jin13h7vzpwwvphh2p"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; }; philr = derive2 { name="philr"; version="1.20.1"; sha256="1ra7wnnn0blxvxvsa570cf6jiqd9fh0ki90j2vbckrzh33z6plyv"; depends=[ape ggplot2 ggtree phangorn tidyr]; }; @@ -1744,7 +1725,7 @@ in with self; { plgem = derive2 { name="plgem"; version="1.66.0"; sha256="06w8xlw4j1fc9ipdgw55dvhp07f04icmhr20lqzwwhqd5pskrra3"; depends=[Biobase MASS]; }; plier = derive2 { name="plier"; version="1.64.0"; sha256="1sw89kici1h2xfg7zvrfdm7b7iw5n3mzwhyz82676w2vk0lgkpn4"; depends=[affy Biobase]; }; plotGrouper = derive2 { name="plotGrouper"; version="1.12.0"; sha256="191grbs8sy8jfxz9a6vsp9qf3zaqppp23fcl5qdrmfzims9krhlw"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; }; - plotgardener = derive2 { name="plotgardener"; version="1.0.12"; sha256="0rayzw2bkkkv3rvgsdv8zmm3j9vflasf8wdrf4yz5hacshr3ng7i"; depends=[curl data_table dplyr ggplotify IRanges plyranges purrr RColorBrewer Rcpp rlang strawr]; }; + plotgardener = derive2 { name="plotgardener"; version="1.0.15"; sha256="0gwvxvfcvcank7dny901kr74a3n52l16bf9lmas660ydhfn7g4x0"; depends=[curl data_table dplyr ggplotify IRanges plyranges purrr RColorBrewer Rcpp rlang strawr]; }; plyranges = derive2 { name="plyranges"; version="1.14.0"; sha256="1s4zyr57x71v9ywdz6s27z158nhazwhmhkx3944l8zsqd5ciwnnc"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyselect]; }; pmm = derive2 { name="pmm"; version="1.26.0"; sha256="0vmkpqxf0lfgkbmyvham128201d33dv3wf9g31nrlwnxd0jcxszn"; depends=[lme4]; }; pmp = derive2 { name="pmp"; version="1.6.0"; sha256="15yggymqh329f2ibhmg9wmh76hbyn0gpz9k1cxzkvh787lss1w72"; depends=[ggplot2 impute matrixStats missForest pcaMethods reshape2 S4Vectors SummarizedExperiment]; }; @@ -1785,7 +1766,7 @@ in with self; { qckitfastq = derive2 { name="qckitfastq"; version="1.10.0"; sha256="177agr9q2rjdk67kc2nv6idnqqk2aq595yc83r8pq6h2wp2ynmn0"; depends=[data_table dplyr ggplot2 magrittr Rcpp reshape2 rlang RSeqAn seqTools zlibbioc]; }; qcmetrics = derive2 { name="qcmetrics"; version="1.32.0"; sha256="1wfc8v1z77wpqfslls8vkw9vi51ylnr8ssr6lm8xz1jd9zijf9ny"; depends=[Biobase knitr pander S4Vectors xtable]; }; qpcrNorm = derive2 { name="qpcrNorm"; version="1.52.0"; sha256="0zbp5kd6lm1qg9xzg9mibcqm7r3ap9gz7fhaf07ls5q1zk63cdj9"; depends=[affy Biobase limma]; }; - qpgraph = derive2 { name="qpgraph"; version="2.28.0"; sha256="03xkx3ck41xd62v5xnyzkqr4mj9cxsyx20fm4cw5688a1w6znafc"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; + qpgraph = derive2 { name="qpgraph"; version="2.28.1"; sha256="1xn414b4sibvzf2lynn3a2555kvp2lrb821dry76d2csbcdp92xk"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; }; qrqc = derive2 { name="qrqc"; version="1.48.0"; sha256="1bnm1shj543kfzljlp5hzk40k6sijja161g2fi06xy2qydilxsml"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rhtslib testthat xtable]; }; qsea = derive2 { name="qsea"; version="1.20.0"; sha256="095ais50x4csqxjj3nq7w2h3xkr4acn3bbkmqilmy7nnpj9z9dnz"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; }; qsmooth = derive2 { name="qsmooth"; version="1.10.0"; sha256="01h7amkhbnzrp5m3j5gb1qqmfszi1qpz5vsimkrzkmpvidg932jh"; depends=[Hmisc SummarizedExperiment sva]; }; @@ -1821,7 +1802,7 @@ in with self; { reconsi = derive2 { name="reconsi"; version="1.6.0"; sha256="0djiq9l70wvicbqia14n1bbd9c7ykvsyrp0r2arw2b2pqh8281fh"; depends=[ggplot2 KernSmooth matrixStats phyloseq reshape2]; }; recount = derive2 { name="recount"; version="1.20.0"; sha256="1maa0fi6dqkcsjlbm52gl0r37qcv951xrc6m4rc6fvp6cb83x68p"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; }; recount3 = derive2 { name="recount3"; version="1.4.0"; sha256="0ciaab6q0pix7zhz7948b8w3qki8dfy9lpa0wffhqjr7fvfh2km2"; depends=[BiocFileCache data_table GenomicRanges Matrix R_utils RCurl rtracklayer S4Vectors sessioninfo SummarizedExperiment]; }; - recountmethylation = derive2 { name="recountmethylation"; version="1.4.0"; sha256="14b06842a97q9cggz6l7kfrlal1kaiq49j2f8sql4b2p6qdh4dpn"; depends=[BiocFileCache HDF5Array minfi R_utils RCurl rhdf5 S4Vectors]; }; + recountmethylation = derive2 { name="recountmethylation"; version="1.4.2"; sha256="11z8ssn7s5mgb92jcr6jcw2rxja8kdddv7bwrqhgns2qkgj52n6w"; depends=[BiocFileCache HDF5Array IlluminaHumanMethylation450kmanifest minfi R_utils RCurl rhdf5 S4Vectors]; }; recoup = derive2 { name="recoup"; version="1.22.0"; sha256="00qxkjjb4bx6vak50jjpl2l9y7myri9x7m17h01j2v2cncg48s55"; depends=[BiocGenerics biomaRt Biostrings circlize ComplexHeatmap GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 httr IRanges Rsamtools RSQLite rtracklayer S4Vectors stringr]; }; regionReport = derive2 { name="regionReport"; version="1.28.1"; sha256="03d7nbfsk55mrlhzzr81mx3ndswkfj7fajyh1yz4jakjdclvzlxm"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; }; regioneR = derive2 { name="regioneR"; version="1.26.1"; sha256="0k500fdmv5l0v7b9pj73bjk3h9k261mfqi6vl52khlw0fafn9b6p"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; }; @@ -1909,7 +1890,7 @@ in with self; { selectKSigs = derive2 { name="selectKSigs"; version="1.6.0"; sha256="03c1dm883vdm5cq4v0dp7kbglxvjljxls6hf7rqqaq7xbw6c9l33"; depends=[gtools HiLDA magrittr Rcpp]; }; semisup = derive2 { name="semisup"; version="1.18.0"; sha256="0zjpcw04mrxg2c31cwbfiv1kymq9zpfmwwffjhq046fiikvkda51"; depends=[VGAM]; }; seq2pathway = derive2 { name="seq2pathway"; version="1.26.0"; sha256="0r780ralqw02871ww4prm73g18wh6nxs0g0cck135kcmp1a9nbwr"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; }; - seqCAT = derive2 { name="seqCAT"; version="1.16.0"; sha256="1c63yp16rp1bfgrd6cxycwpgzglqm4hngbcr7gy4myxqqhsbrimi"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges rlang rtracklayer S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; + seqCAT = derive2 { name="seqCAT"; version="1.16.1"; sha256="011rfyb5jgcfc2g92v9d19n75wsziga16s3iqg78zb5vp3vcwnlk"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges rlang rtracklayer S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; }; seqCNA = derive2 { name="seqCNA"; version="1.40.0"; sha256="1v8j1mm40r67ab5x38jzynrfmmlpfkwv7afrsr3zwcmxr3h2c7i3"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; }; seqLogo = derive2 { name="seqLogo"; version="1.60.0"; sha256="013hwj2lp29nqa8mkvm25aliarg0k725crg4cpsbj0iiskyrs6rl"; depends=[]; }; seqPattern = derive2 { name="seqPattern"; version="1.26.0"; sha256="1mik575qaxw9h9qyjn971207pfgbc8p1mx60jrb20jbrrihgg2na"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; }; @@ -1917,7 +1898,7 @@ in with self; { seqbias = derive2 { name="seqbias"; version="1.42.0"; sha256="1q608c1madij8l52ljl3w52vi3cssr6ikny84yj6n8s7yvpx5jpr"; depends=[Biostrings GenomicRanges Rhtslib]; }; seqcombo = derive2 { name="seqcombo"; version="1.16.0"; sha256="0xyrjbvgrld5sy6g6sp79f43j93jnyccwg21il65fqrzb7z4d7xk"; depends=[Biostrings cowplot dplyr ggplot2 igraph magrittr yulab_utils]; }; seqsetvis = derive2 { name="seqsetvis"; version="1.14.1"; sha256="1ja286qz7m15k97ms7rm81l0picsjjpm7fmsdpbklc66y3syl089"; depends=[data_table eulerr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 ggplotify IRanges limma pbapply pbmcapply png RColorBrewer Rsamtools rtracklayer S4Vectors UpSetR]; }; - sesame = derive2 { name="sesame"; version="1.12.8"; sha256="047wpk7lvl5fik7iy0bf8jhqf3yp86gka0pkr0y9xl0a17gd5imz"; depends=[BiocParallel DNAcopy e1071 fgsea GenomicRanges ggplot2 ggrepel illuminaio IRanges KernSmooth MASS matrixStats preprocessCore randomForest reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; + sesame = derive2 { name="sesame"; version="1.12.9"; sha256="0sqmykp5nc87ixhf330bhz0vh28si3c6kfvr8rrfhhf3jvy34a2k"; depends=[BiocParallel DNAcopy e1071 fgsea GenomicRanges ggplot2 ggrepel illuminaio IRanges KernSmooth MASS matrixStats preprocessCore randomForest reshape2 S4Vectors sesameData stringr SummarizedExperiment tibble wheatmap]; }; sevenC = derive2 { name="sevenC"; version="1.14.0"; sha256="06m6479ps7896zaks8jnnak8l7c6abbsdx56k3l5ir78681g4bq1"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; }; sevenbridges = derive2 { name="sevenbridges"; version="1.24.0"; sha256="03p7p1mwa3m8zvyz5761xmqhch6cfgy42cv0swwgj0n9jr83sc23"; depends=[curl data_table docopt httr jsonlite objectProperties S4Vectors stringr uuid yaml]; }; shinyMethyl = derive2 { name="shinyMethyl"; version="1.30.0"; sha256="0ihs4l4r46qyv7j8a2g590x86y0dwki2gzllwq2a31il34jrbgq5"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; }; @@ -1991,7 +1972,7 @@ in with self; { switchBox = derive2 { name="switchBox"; version="1.30.0"; sha256="09z9wi8yzjq49rjmn707a1kvf7c203lbxcnc7znwhy7lv51svj67"; depends=[gplots pROC]; }; switchde = derive2 { name="switchde"; version="1.20.0"; sha256="1n815zwj5znddgc3pz87089q8bvb14n2g61zfang8d8pna4zbf7v"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; }; synapsis = derive2 { name="synapsis"; version="1.0.0"; sha256="1kqapzcd2zvmyaqshcrfxkkaf6k7kwaqnd6g4dhnjcf2wqnf6fs5"; depends=[EBImage]; }; - synergyfinder = derive2 { name="synergyfinder"; version="3.2.6"; sha256="05jzj18lc0dznq32g5jp14dpqx816yqln8kfk7mayqx7rfwh52lf"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; + synergyfinder = derive2 { name="synergyfinder"; version="3.2.8"; sha256="07fjam0c6j5ga75601vsbp4x1x8h31gxwxanwjxmixnv7md0pdms"; depends=[dplyr drc furrr future ggforce ggplot2 ggrepel gstat kriging lattice magrittr metR mice nleqslv pbapply plotly purrr reshape2 sp SpatialExtremes stringr tidyr tidyverse vegan]; }; synlet = derive2 { name="synlet"; version="1.24.0"; sha256="1xidxlkppap0x8h9iiyl78lcx50ckpg46n8pl49vz4435vd6grp2"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; }; systemPipeR = derive2 { name="systemPipeR"; version="2.0.5"; sha256="1j91pyfjsqngxxlxjqc477pznlfax4vayrks2q12rxw76ija80hf"; depends=[BiocGenerics Biostrings crayon GenomicRanges ggplot2 htmlwidgets magrittr Rsamtools S4Vectors ShortRead stringr SummarizedExperiment yaml]; }; systemPipeShiny = derive2 { name="systemPipeShiny"; version="1.4.0"; sha256="0h803ijajf32igfknkaivlzrc323apzligq1j8ghpf02q7f5q830"; depends=[assertthat bsplus crayon dplyr drawer DT ggplot2 glue htmltools magrittr openssl plotly R6 rlang RSQLite rstudioapi shiny shinyAce shinydashboard shinydashboardPlus shinyFiles shinyjqui shinyjs shinytoastr shinyWidgets spsComps spsUtil stringr styler tibble vroom yaml]; }; @@ -2030,9 +2011,9 @@ in with self; { traseR = derive2 { name="traseR"; version="1.24.0"; sha256="0ch8hamhjjdcpi95gjqybzmk8vgx2j70gnlfiswvp8bjwf15hlfp"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; }; traviz = derive2 { name="traviz"; version="1.0.0"; sha256="03w4jpx5vp4cf3g77cks6dp8dkl66bbjsixr4j25xc3xr26g6kw0"; depends=[Biobase ggplot2 mgcv princurve RColorBrewer rgl SingleCellExperiment slingshot SummarizedExperiment viridis]; }; treeio = derive2 { name="treeio"; version="1.18.1"; sha256="19i8jhvycv57zbxhpn5gx5ymdiws64kc3nidc00xh1j9a8xkj1aq"; depends=[ape dplyr jsonlite magrittr rlang tibble tidytree]; }; - treekoR = derive2 { name="treekoR"; version="1.2.0"; sha256="1xrq8j7cr6s4a9171xqm1iw3a1dzdnmgyy68knilr42nxak064nn"; depends=[ape data_table diffcyt dplyr edgeR ggiraph ggplot2 ggtree hopach lme4 multcomp patchwork SingleCellExperiment tidyr]; }; + treekoR = derive2 { name="treekoR"; version="1.2.1"; sha256="07bgxrb523abdvzg1c7ahl1mkkfiisl1z97jb3yjdp024zg64qdi"; depends=[ape data_table diffcyt dplyr edgeR ggiraph ggplot2 ggtree hopach lme4 multcomp patchwork SingleCellExperiment tidyr]; }; trena = derive2 { name="trena"; version="1.16.0"; sha256="1kz68z0dixiiryd62diddq352h8sx6r15flxm7h715abcniniyjn"; depends=[AnnotationDbi biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RMySQL RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 vbsr WGCNA xgboost]; }; - tricycle = derive2 { name="tricycle"; version="1.2.0"; sha256="1jcvbzpd5cfyyy6n6kvi0biyrv4m86z5fdmhjkg5wm4dm61r5n9q"; depends=[AnnotationDbi circular dplyr GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors scater scattermore SingleCellExperiment SummarizedExperiment]; }; + tricycle = derive2 { name="tricycle"; version="1.2.1"; sha256="19yh7yif8630j845m9rddva2z0xy4jcw9j4hvyr076jqbyxz998r"; depends=[AnnotationDbi circular dplyr GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors scater scattermore SingleCellExperiment SummarizedExperiment]; }; trigger = derive2 { name="trigger"; version="1.40.0"; sha256="0irlxzy6vhp2q3lr9b4qnv7w43c3sdh7ali3rw1fgfpg29i4jc1f"; depends=[corpcor qtl qvalue sva]; }; trio = derive2 { name="trio"; version="3.32.0"; sha256="16bnh1q53b2pkw4v7why5b1srl39zw6iza34yxynv34b8529sl46"; depends=[LogicReg siggenes survival]; }; triplex = derive2 { name="triplex"; version="1.34.0"; sha256="0niyiafps242y9gnrc85ncb28c1q9ny1b20la53397h5w46sqq6i"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; }; @@ -2049,7 +2030,7 @@ in with self; { uSORT = derive2 { name="uSORT"; version="1.20.0"; sha256="0y6a6ksvbrxyqri0mc01nbls107sacs66zmbjs4qxq52rmy5xvcd"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; }; uncoverappLib = derive2 { name="uncoverappLib"; version="1.4.0"; sha256="0nh5z1iirqdiv5q66k1r8byv9dasnzyinl0plan68gxvia770cnb"; depends=[BiocFileCache BSgenome_Hsapiens_UCSC_hg19 condformat DT EnsDb_Hsapiens_v75 EnsDb_Hsapiens_v86 GenomicRanges Gviz Homo_sapiens markdown openxlsx org_Hs_eg_db OrganismDbi processx rappdirs rlist Rsamtools shiny shinyBS shinycssloaders shinyjs shinyWidgets stringr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; }; unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.30.0"; sha256="0kw26bm2yyna38q5r4zb2alpa3j4gx7v970419mnjlif4g0hmggk"; depends=[BiocGenerics HTqPCR]; }; - universalmotif = derive2 { name="universalmotif"; version="1.12.3"; sha256="00kdhjyjgxjiab4n9lxagc1bb629xnwc68cqy2gc0wnxx1j3v262"; depends=[BiocGenerics Biostrings ggplot2 IRanges MASS Rcpp RcppThread rlang S4Vectors yaml]; }; + universalmotif = derive2 { name="universalmotif"; version="1.12.4"; sha256="01skcvzd815m3c15ka2pk7z6bggc4l8bhvaf4z9v95i36k4mn5zd"; depends=[BiocGenerics Biostrings ggplot2 IRanges MASS Rcpp RcppThread rlang S4Vectors yaml]; }; variancePartition = derive2 { name="variancePartition"; version="1.24.0"; sha256="0f5y61dpzwmr8v7npim18zvxa8n49rbzclb9j72haba0px6ibhvw"; depends=[Biobase BiocParallel doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS Matrix pbkrtest progress reshape2 rlang scales]; }; vbmp = derive2 { name="vbmp"; version="1.62.0"; sha256="0yavhi3n9nlgq2s0xvglsnfi9yxdl0di8vs30h9p6a0hh3d1c8ql"; depends=[]; }; velociraptor = derive2 { name="velociraptor"; version="1.4.0"; sha256="16v1qxl8z5pr3ygvby5n2klw0wm468fbsch1b9a67il8bjxslg0j"; depends=[basilisk BiocGenerics BiocParallel BiocSingular DelayedArray Matrix reticulate S4Vectors scuttle SingleCellExperiment SummarizedExperiment zellkonverter]; }; @@ -2079,11 +2060,30 @@ in with self; { zinbwave = derive2 { name="zinbwave"; version="1.16.0"; sha256="05w95bnq63a339d8x4932k81ycqf825s3qwn98vr52v5g2hv46fq"; depends=[BiocParallel edgeR genefilter Matrix SingleCellExperiment softImpute SummarizedExperiment]; }; zlibbioc = derive2 { name="zlibbioc"; version="1.40.0"; sha256="0a0dl7z58zxdj6938zbxixphgljj1giylk1nd05bb7qsccmp0xhj"; depends=[]; }; ALPS = derive2 { name="ALPS"; version="1.5.0"; sha256="1aydvzc6x0871iasij68xqdlhjyg69qbqxm0qh1q52w8gj2nyq3p"; depends=[assertthat BiocParallel ChIPseeker corrplot data_table dplyr genefilter GenomicRanges GGally gghalves ggplot2 ggseqlogo Gviz magrittr org_Hs_eg_db plyr reshape2 rtracklayer stringr tibble tidyr TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; broken = true; }; + Autotuner = derive2 { name="Autotuner"; version="1.7.0"; sha256="0k07gs6bnxs0894iqi1lhk96mifjcdf68bv4q9fjv50nzqpzqd8l"; depends=[assertthat Biobase cluster entropy MSnbase mzR RColorBrewer scales]; broken = true; }; + CHETAH = derive2 { name="CHETAH"; version="1.9.0"; sha256="1nfz8zpkrghfh942cr8xwvrj0d47h1nbf3nv534mp7rii38v07j3"; depends=[bioDist corrplot cowplot dendextend ggplot2 gplots pheatmap plotly reshape2 S4Vectors shiny SingleCellExperiment SummarizedExperiment]; broken = true; }; CompGO = derive2 { name="CompGO"; version="1.28.0"; sha256="16nlrk9wbxj51y8s7s58mdhpi70ghfacxi283406gwya3cm79f0n"; depends=[GenomicFeatures ggplot2 pathview pcaMethods reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; broken = true; }; + CountClust = derive2 { name="CountClust"; version="1.21.0"; sha256="17px9jkpjwz0j2f5h8xv52wh24ilqvlb6dvczjc36lb7mq4cw3sq"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; broken = true; }; EasyqpcR = derive2 { name="EasyqpcR"; version="1.31.0"; sha256="0lb2px789668fr1gxghycy7lbdkpwmippv6xmmwws6rbanvfd6v4"; depends=[matrixStats plotrix plyr]; broken = true; }; + FindMyFriends = derive2 { name="FindMyFriends"; version="1.23.0"; sha256="0xbhl6ljxb522r5062vv6xdziaaqkkwylmvlymvc5f1grjz0a4z9"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; broken = true; }; FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.23.0"; sha256="04lk2cahf6zqnhpzh0zwas4vmvaz4kcik9ri65bs9d9ximzjam91"; depends=[jsonlite RCurl XML]; broken = true; }; + GenoGAM = derive2 { name="GenoGAM"; version="2.11.0"; sha256="058qix2h0zm2k9csmbdhci2wqih3lyggjj591cqn0ls2nv7bnyvj"; depends=[BiocParallel Biostrings data_table DelayedArray DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges HDF5Array IRanges Matrix Rcpp RcppArmadillo rhdf5 Rsamtools S4Vectors sparseinv SummarizedExperiment]; broken = true; }; + Herper = derive2 { name="Herper"; version="1.3.0"; sha256="038cavnbz7gvmv9mpnf88n8dzrg7yl306y68zsq5hpkrj6qax9vr"; depends=[reticulate rjson withr]; broken = true; }; + HiCBricks = derive2 { name="HiCBricks"; version="1.11.0"; sha256="12s01r9z569pp6amlvcs7fqmwivw9jb2ahnnyq6nzflsyn5277kl"; depends=[BiocParallel curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges jsonlite R_utils R6 RColorBrewer readr reshape2 rhdf5 S4Vectors scales stringr tibble viridis]; broken = true; }; + MBQN = derive2 { name="MBQN"; version="2.5.0"; sha256="01pf9wkk3dsxgx1y8mxfxn9m2j2hqipc5kajm7w8g60bj9flg09j"; depends=[BiocFileCache ggplot2 limma PairedData preprocessCore rappdirs RCurl rpx SummarizedExperiment xml2]; broken = true; }; MSEADbi = derive2 { name="MSEADbi"; version="1.2.0"; sha256="1g1kg3nh7iwg5nrpmig6srw6as4yfwmbqn965pffrk0zp19llsbf"; depends=[AnnotationDbi Biobase DBI RSQLite]; broken = true; }; + MSstatsTMTPTM = derive2 { name="MSstatsTMTPTM"; version="1.1.2"; sha256="16qnddwhwhjjfr5akdrmp93gkxq2r41s82hb1blbz47lwbj5kaj5"; depends=[dplyr ggplot2 gridExtra MSstatsTMT Rcpp reshape2 stringr]; broken = true; }; + MethCP = derive2 { name="MethCP"; version="1.7.0"; sha256="1smhwmrgckgivf6xfk54sz197cw1mar95chzkrfpf4wxw3jzbbkn"; depends=[BiocParallel bsseq DNAcopy DSS GenomeInfoDb GenomicRanges IRanges methylKit S4Vectors]; broken = true; }; + RmiR = derive2 { name="RmiR"; version="1.49.0"; sha256="16nwh4a97qvyicm4f102xs52lx8cld0b80fykgil86kkd6v8zlja"; depends=[DBI RmiR_Hs_miRNA]; broken = true; }; + ScISI = derive2 { name="ScISI"; version="1.65.0"; sha256="0q3bbfsink5d8xslhp129qwvlq5mdzw8zkv9msd0q8qmkclsbiz1"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; broken = true; }; SwimR = derive2 { name="SwimR"; version="1.29.0"; sha256="0n58x3i4k3icvhg8z60zlhpszv8bb9pain07nl9rszyvmpi71vg2"; depends=[gplots R2HTML signal]; broken = true; }; + XCIR = derive2 { name="XCIR"; version="1.7.0"; sha256="0n42pw01wv1sk06hby9kwijx6zwaw4lrlpsa0wlkrkf323slkllw"; depends=[biomaRt data_table ggplot2 IRanges readxl S4Vectors seqminer VariantAnnotation]; broken = true; }; affyPara = derive2 { name="affyPara"; version="1.51.0"; sha256="01165f84snc3ksk0ghw631i2l5jklp4n826jwy5926wvxy3zlwz0"; depends=[affy affyio aplpack snow vsn]; broken = true; }; + coexnet = derive2 { name="coexnet"; version="1.15.0"; sha256="1h3l7rjk757qbddyg0p8l21h8z3i4n3ml295lmavszsm9knyc2fk"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; broken = true; }; + compEpiTools = derive2 { name="compEpiTools"; version="1.27.0"; sha256="0hk3yd7ql91wg9r24r57ybhs1nx6zbd5v199sv7xd91k980n2ay5"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; broken = true; }; + dualKS = derive2 { name="dualKS"; version="1.53.0"; sha256="16cfcylmmcj8x2808529lbpm7qbbrxygic0jkaglhqcdxgrqw3rw"; depends=[affy Biobase]; broken = true; }; methyAnalysis = derive2 { name="methyAnalysis"; version="1.34.0"; sha256="05k3n7iy5ijidbnblbqqas8dsj8drwzbhyrbs8wl1ypkg51havi0"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; broken = true; }; + methylPipe = derive2 { name="methylPipe"; version="1.27.0"; sha256="0z2md9n1flzfsgsbzwffn4q6yfcjyj03bg1vi4phcknigbhg1viy"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; broken = true; }; + perturbatr = derive2 { name="perturbatr"; version="1.13.0"; sha256="0ssk8cr42hibn917s2z2nzcdan54c7xiydypbi8f3g4w68q4ly31"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; broken = true; }; + phemd = derive2 { name="phemd"; version="1.9.0"; sha256="0hqivlc9hzcfcprng1499nas84fwvgisg8976vsjciyn903355jr"; depends=[Biobase BiocGenerics cluster cowplot destiny ggplot2 igraph maptree monocle phateR pheatmap pracma RANN RColorBrewer reticulate Rtsne S4Vectors scatterplot3d Seurat SingleCellExperiment SummarizedExperiment transport VGAM]; broken = true; }; } diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix index 62f68de9091..ee3f719fd12 100644 --- a/pkgs/development/r-modules/cran-packages.nix +++ b/pkgs/development/r-modules/cran-packages.nix @@ -4,7 +4,7 @@ # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix { self, derive }: -let derive2 = derive { snapshot = "2022-02-08"; }; +let derive2 = derive { snapshot = "2022-03-10"; }; in with self; { A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; }; AATtools = derive2 { name="AATtools"; version="0.0.1"; sha256="08is383xhs2lc9wfffykcwqyl8mwcxfpk3lnvlpkp96hq9m9ikbf"; depends=[doParallel dplyr foreach magrittr]; }; @@ -24,9 +24,11 @@ in with self; { ACNE = derive2 { name="ACNE"; version="0.8.1"; sha256="0kzapsalzw6jsi990qicp4glijh5ddnfimsg5pidgbwxg4i05grl"; depends=[aroma_affymetrix aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; ACSWR = derive2 { name="ACSWR"; version="1.0"; sha256="195vjrkang5cl7gwsna0aq4p0h4jym9xg9yh94bnf8vq6wf8j83n"; depends=[MASS]; }; ACTCD = derive2 { name="ACTCD"; version="1.2-0"; sha256="0mzjxxr2zfdidw8ibh6w8mvpkw3q3nvngqi05g9ind26ckvk053p"; depends=[GDINA R_methodsS3]; }; + ACWR = derive2 { name="ACWR"; version="0.1.0"; sha256="19q8m5swp7ivrxi8rbkpp37d6fwr35zd8xs4ygpfgd07axc9451s"; depends=[r2d3]; }; ADAPTS = derive2 { name="ADAPTS"; version="1.0.21"; sha256="0ddmgk1syi0mafgp3fyvgz95ny8disyvmkd859ya32lykjjmwsxv"; depends=[ComICS doParallel e1071 foreach missForest nnls pcaMethods pheatmap preprocessCore quantmod ranger]; }; ADCT = derive2 { name="ADCT"; version="0.1.0"; sha256="1glf83ydx4v3ld8c4gb9h3jk6srd054bis5l8k57p1ba4fnqnnpp"; depends=[mvtnorm]; }; ADDT = derive2 { name="ADDT"; version="2.0"; sha256="044bb1jw2m8vwk5q8l7rlz4kqphjvy8i9d59rjg0k5q5l9vczfrp"; depends=[coneproj Matrix nlme]; }; + ADER = derive2 { name="ADER"; version="1.4"; sha256="0ada3b0ykbg1pdqj8i3ir5ldzb2prf3bhwm2mpln14h19hxc6i35"; depends=[]; }; ADGofTest = derive2 { name="ADGofTest"; version="0.3"; sha256="0ik817qzqp6kfbckjp1z7srlma0w6z2zcwykh0jdiv7nahwk3ncw"; depends=[]; }; ADMM = derive2 { name="ADMM"; version="0.3.3"; sha256="04biinzr0x3jkwss00q6zxfnzk62dafc6386z5vfqs4ch0ifh60n"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo Rdpack]; }; ADMMnet = derive2 { name="ADMMnet"; version="0.1.1"; sha256="1la92fwg75ylqbz00znqd0rhv5r509kgh9wwznjacppif773wp6i"; depends=[Matrix Rcpp RcppEigen]; }; @@ -46,7 +48,7 @@ in with self; { AGD = derive2 { name="AGD"; version="0.39"; sha256="0hmq684snnffc2v7vmns4ky200a6zh1ggiap03n5cvpb3nlqc6lr"; depends=[gamlss gamlss_dist]; }; AGHmatrix = derive2 { name="AGHmatrix"; version="2.0.4"; sha256="1pvnv3fzxfdzjz9il0022k46kkcb57ypz31qn0br7mck64bkzsia"; depends=[Matrix zoo]; }; AGPRIS = derive2 { name="AGPRIS"; version="1.0"; sha256="0xlaz75d19adfq79sh5aa52bzpmjqawshay2a3vw9mq8l23z64if"; depends=[Matrix matrixcalc maxLik plyr rgdal sp spacetime spdep]; }; - AGSDest = derive2 { name="AGSDest"; version="2.3.2"; sha256="0f3qchvdi2n1cr8ipjj332dw8hdza58dvfk21p0c6bhmxzg7f71i"; depends=[ldbounds]; }; + AGSDest = derive2 { name="AGSDest"; version="2.3.4"; sha256="140bqzgaagdyzgxsn998jw2sxak448i47xyacn2psfnps440gfjr"; depends=[ldbounds]; }; AGread = derive2 { name="AGread"; version="1.1.1"; sha256="0ar0cnlaxxmvn2gdydmm9vr45xjhx06kky556d17l93k0xwfvzm3"; depends=[anytime binaryLogic data_table DescTools dplyr GGIR lubridate magrittr PAutilities Rcpp reshape2 rlang seewave stringr]; }; AHM = derive2 { name="AHM"; version="1.0.1"; sha256="00r1rn7d64a18rckbxvla5yapqv00p9ajxv72fx7s6p80kfal89w"; depends=[devtools dplyr glmnet Matrix mixexp plgp quadprog tibble tidyr]; }; AHMbook = derive2 { name="AHMbook"; version="0.2.3"; sha256="0ygdxyliq9wmpmjgmq1wb6a1g9pv6jl0lzaz7545gzwn7nwdw1y7"; depends=[coda mvtnorm plotrix RandomFields raster sp spdep unmarked]; }; @@ -100,12 +102,12 @@ in with self; { ARDL = derive2 { name="ARDL"; version="0.1.1"; sha256="0vmx21dvbz5l67drdma77z9x30j6sw650lhkrkcbifjn915x6dks"; depends=[aod dplyr dynlm lmtest msm stringr zoo]; }; ARHT = derive2 { name="ARHT"; version="0.1.0"; sha256="1fz81a202r8vk655dg6a03zfq3gfkimqjvmc95k3j02xz0iv58kn"; depends=[]; }; ARIbrain = derive2 { name="ARIbrain"; version="0.2"; sha256="18c7yxkrnqh18gcfzvdc5wqig6ywdmjcy8rlz0fdj3b8fb84dfpr"; depends=[hommel plyr RNifti]; }; - AROC = derive2 { name="AROC"; version="1.0-3"; sha256="07kzkb0mlx8nj8c0kz2b6in51biwawv7vvqqkg0h5zfj92k26hdb"; depends=[Hmisc MASS Matrix moments nor1mix np spatstat spatstat_geom]; }; - ARPALData = derive2 { name="ARPALData"; version="1.2.2"; sha256="1mp5wrkl6d0yg8vrp7p2b6jg6d1gchkda1nyxhcpa7wj96khnh2w"; depends=[aweek data_table doParallel dplyr eurostat ggplot2 lubridate magrittr moments purrr readr rlang RSocrata sf stringi stringr tibble tidyr tidyselect tidyverse tm]; }; + AROC = derive2 { name="AROC"; version="1.0-4"; sha256="0wwv63mlh8pl5pzaih57l2qy70fz2wpfyxns1lyp95sxhq7ddwza"; depends=[Hmisc MASS Matrix moments nor1mix np spatstat_geom]; }; + ARPALData = derive2 { name="ARPALData"; version="1.2.3"; sha256="1zpl3dpqkf9m9d4hqqmcbqb3dz8gcqyp0rhs8gvs5vgidsy5sjv8"; depends=[aweek data_table doParallel dplyr eurostat ggplot2 lubridate magrittr moments mondate purrr readr rlang RSocrata sf stringi stringr tibble tidyr tidyselect tidyverse tm]; }; ARPobservation = derive2 { name="ARPobservation"; version="1.2.1"; sha256="1gpq5wl3mwp4hi49h1g6nnizzpnfc19pv8chdyhv8y5sraq1k2ag"; depends=[]; }; ART = derive2 { name="ART"; version="1.0"; sha256="186w1ivj5v3h906crl953qxgai5wiznaih83dgvwgnmabs9p1wvk"; depends=[car]; }; ARTP2 = derive2 { name="ARTP2"; version="0.9.45"; sha256="12nqxry2jkl1n07rbms38mrnp39cn00d0h272d9f1z5x883flv62"; depends=[data_table Formula]; }; - ARTofR = derive2 { name="ARTofR"; version="0.3.3"; sha256="1ha76ilbbl8bfls8sbk98k6qysymy3jphmkn51j9sr60ghsdlxg4"; depends=[bannerCommenter clipr]; }; + ARTofR = derive2 { name="ARTofR"; version="0.4.1"; sha256="1dw9aascnqr5cbk8a862rlma94b39ndgkrhf826qf4k58y92nf5q"; depends=[bannerCommenter clipr rstudioapi shiny]; }; ARTool = derive2 { name="ARTool"; version="0.11.1"; sha256="16awxcncyhry0ygk8gdvlff787837rr8qsyg1pxd11w4v1llrqrf"; depends=[car dplyr emmeans lme4 magrittr plyr]; }; ARpLMEC = derive2 { name="ARpLMEC"; version="2.1"; sha256="0fj5mcaqpvgcwb6zp8yc5747clm6js99r3lqx5d3536w6k0f51r0"; depends=[gmm lmec MASS Matrix mnormt MomTrunc mvtnorm numDeriv sandwich tmvtnorm TTmoment]; }; ASGS_foyer = derive2 { name="ASGS.foyer"; version="0.3.1"; sha256="089c4vm629rni0dfgg3r2a9s9yisdx1qs2dwssg44qw1w4hf1f50"; depends=[sp]; }; @@ -125,7 +127,6 @@ in with self; { AUC = derive2 { name="AUC"; version="0.3.0"; sha256="0ripcib2qz0m7rgr1kiz68nx8f6p408l1ww7j78ljqik7p3g41g7"; depends=[]; }; AUCRF = derive2 { name="AUCRF"; version="1.1"; sha256="00d7jcg2dyvf7sc9w7vxxd85m7nsbcmfqsavrv236vxfpfc9yn7i"; depends=[randomForest]; }; AUtests = derive2 { name="AUtests"; version="0.99"; sha256="0ima350mjlqvij6f9xy6wfcibvlji7nh0prpqngj7apn82ri4m2k"; depends=[logistf]; }; - AWAPer = derive2 { name="AWAPer"; version="0.1.46"; sha256="02n662wvd8qwshfmj9qfff730qs6ls82hkdsphw05jj6llddi4k5"; depends=[chron Evapotranspiration maptools ncdf4 raster sp xts zoo]; }; AWR = derive2 { name="AWR"; version="1.11.189-1"; sha256="1imvpmq6br0z7l67w66a5s1ylbv6xvypj0wc09bmjy7sapdmkn4x"; depends=[rJava]; }; AWR_Athena = derive2 { name="AWR.Athena"; version="2.0.7-0"; sha256="1j9bqhyk0jzry4g379ml65gwxlszn7pjif1dywgns98jbry8mavh"; depends=[rJava RJDBC]; }; AWR_KMS = derive2 { name="AWR.KMS"; version="0.1"; sha256="00aqhyqlncsv0vfcyhaazxaclwm63v5kscssash7529avdwd4gqg"; depends=[AWR jsonlite rJava]; }; @@ -145,7 +146,7 @@ in with self; { AdaSampling = derive2 { name="AdaSampling"; version="1.3"; sha256="1c8dh8lxyb076317n4qk2g3qv5j4mc1dszbh3k1p2b0nxiprqk5i"; depends=[caret class e1071 MASS]; }; AdapEnetClass = derive2 { name="AdapEnetClass"; version="1.2"; sha256="01k3mj4g1ckbng7wkzzn9h0k9yf01cpnnkly0sjda574c5jhj0rc"; depends=[glmnet imputeYn lars quadprog]; }; AdapSamp = derive2 { name="AdapSamp"; version="1.1.1"; sha256="1jayjrsiib2ij4rxxj59g71r3xhzl5yqh0lhi8k6cfy03i7dkvis"; depends=[pracma]; }; - AdaptFitOS = derive2 { name="AdaptFitOS"; version="0.67"; sha256="0s8vv960pkbccpwlfsg1jsfjnfmq9iy8cj1fak5fn2s60zb7nm0a"; depends=[MASS mgcv nlme SemiPar]; }; + AdaptFitOS = derive2 { name="AdaptFitOS"; version="0.68"; sha256="0hcmqiczb03377msz1m75nnpa6wc6zfgpz3cp0qpc9msdl1y83hh"; depends=[MASS mgcv nlme SemiPar]; }; AdaptGauss = derive2 { name="AdaptGauss"; version="1.5.6"; sha256="076jjnqp4ayq4kh95qns4kfzfvl6mjllhsq6hfp66bww7w976xxh"; depends=[DataVisualizations pracma Rcpp shiny]; }; AdaptiveSparsity = derive2 { name="AdaptiveSparsity"; version="1.6"; sha256="0imr5m8mll9j6n4icsv6z9rl5kbnwsp9wvzrg7n90nnmcxq2cz91"; depends=[MASS Matrix Rcpp RcppArmadillo]; }; AdequacyModel = derive2 { name="AdequacyModel"; version="2.0.0"; sha256="0amp6ic1wylk24sp9wpx3ci38njj7b9qjqfp89j39hkl6kc1q7sq"; depends=[]; }; @@ -170,8 +171,9 @@ in with self; { AllPossibleSpellings = derive2 { name="AllPossibleSpellings"; version="1.1"; sha256="0ksfm2pfjka3yjgcd257v7sns1niaylsfxvhhh2jwdi016cpdw10"; depends=[]; }; AlleleRetain = derive2 { name="AlleleRetain"; version="2.0.2"; sha256="0b6h5giskqbjbrk8nf29i75wrhxsjw1c87laiqzrpbp9n717bl20"; depends=[]; }; AlleleShift = derive2 { name="AlleleShift"; version="1.0-2"; sha256="0pmjh5nq67fxnwlszp5rlmnmzg4gdjkr9dzaz6b0p7vh2cfy9m45"; depends=[adegenet BiodiversityR vegan]; }; - AlphaPart = derive2 { name="AlphaPart"; version="0.9.0"; sha256="0k9fk1kks4sghv7b7bip2jrwy944b6fcgmaxwgrbanw9q16i309n"; depends=[directlabels dplyr gdata ggplot2 magrittr pedigree Rcpp reshape]; }; - AlphaSimR = derive2 { name="AlphaSimR"; version="1.0.4"; sha256="115rn03dgpgcb5h9f2f5rz7kmlrfqdr0xdw7l9f4v7wkbdmr9h0l"; depends=[BH R6 Rcpp RcppArmadillo]; }; + Allspice = derive2 { name="Allspice"; version="1.0.3"; sha256="1l11alczi3bq8l9np4wzwf19sfnkqpbllqw54mx30py7qz6p1ng3"; depends=[]; }; + AlphaPart = derive2 { name="AlphaPart"; version="0.9.2"; sha256="1k0ib1v8jssdgnjjkwapiy4vjf380dk103kmxlziz771vq2wsaix"; depends=[directlabels dplyr gdata ggplot2 magrittr pedigree Rcpp reshape]; }; + AlphaSimR = derive2 { name="AlphaSimR"; version="1.1.2"; sha256="0pc3byi19ydlnmddgc76gdqgvlyw7ixa3k55471x8kxnz22fhcx1"; depends=[BH R6 Rcpp RcppArmadillo]; }; Amelia = derive2 { name="Amelia"; version="1.8.0"; sha256="0plrnmlwn91bmrx8ip83nqb15ykjxjl6m49788sinq5cinkdbh9y"; depends=[foreign Rcpp RcppArmadillo]; }; AmericanCallOpt = derive2 { name="AmericanCallOpt"; version="0.95"; sha256="1nhy44j5bmmjsp6g79nrn741rzzxikhdnxk4wwbdj9igcc1bs573"; depends=[]; }; AmesHousing = derive2 { name="AmesHousing"; version="0.0.4"; sha256="080r0fkmqsdrjgwbmdzacnkmd8py611z54i6r7nzj14r295d5qhk"; depends=[dplyr magrittr]; }; @@ -180,7 +182,6 @@ in with self; { AmpGram = derive2 { name="AmpGram"; version="1.0"; sha256="1j5zx6n8cyzh6dnv96234zmlfj90fs9w4vm32xw8iqgvpcviqyz6"; depends=[biogram devtools pbapply ranger shiny stringi]; }; AmpliconDuo = derive2 { name="AmpliconDuo"; version="1.1.1"; sha256="0vw06x47vc0dqzafgpkn4abdsrhxfs9dq8nnrr2pl49skj5n4hks"; depends=[ggplot2 xtable]; }; AmyloGram = derive2 { name="AmyloGram"; version="1.1"; sha256="1xdi3i3nw4fzj4d040r55f0gid72gy3vbz5nbdrvapl97zk3kp8c"; depends=[biogram ranger seqinr shiny]; }; - AnDE = derive2 { name="AnDE"; version="1.0"; sha256="1yil8ab50wvlqmdla9kmfba8vfgy5r694r6igb58s6vnmld78yf2"; depends=[discretization foreign functional stringr]; }; AnaCoDa = derive2 { name="AnaCoDa"; version="0.1.4.4"; sha256="1b03bxysvw9v4j3bzsmrjf5ci06v6s83ix89qxy73ba5akf2gb7h"; depends=[mvtnorm Rcpp VGAM]; }; AnalyzeFMRI = derive2 { name="AnalyzeFMRI"; version="1.1-24"; sha256="0qkhw6bik6s82h4yb5bashqjl8wfxarivvz6r5ffn9cgrvlwyahd"; depends=[fastICA R_matlab]; }; AncestryMapper = derive2 { name="AncestryMapper"; version="2.0"; sha256="1fr2y1a5rn7rq8aly94f618kywix32jwysi70nfhaqx8hf4zzprb"; depends=[svd]; }; @@ -189,7 +190,6 @@ in with self; { AnglerCreelSurveySimulation = derive2 { name="AnglerCreelSurveySimulation"; version="1.0.2"; sha256="1nhd0i30g5wb5jh96gfaa0lgnbnj0m2vy4gz7v2c3142396zalnx"; depends=[dplyr ggplot2]; }; AnimalHabitatNetwork = derive2 { name="AnimalHabitatNetwork"; version="0.1.0"; sha256="1bhqypkiw5v9w26jbdmhndqj5hjfmf7zwivrq2hgs0zcjxwa8gfn"; depends=[ggplot2 igraph]; }; AnnoProbe = derive2 { name="AnnoProbe"; version="0.1.6"; sha256="182m711l5m037mfyvr6334pmv338fxb3007j6713abvylsh6x06q"; depends=[Biobase DT ggplot2 ggpubr pheatmap]; }; - AnnotLists = derive2 { name="AnnotLists"; version="1.2"; sha256="1g2khb2ggniwg2zcjamsm3bxyrl2zabvk540b5vyy9am9k83m1g9"; depends=[]; }; AnnotationBustR = derive2 { name="AnnotationBustR"; version="1.3.0"; sha256="1q5yxzzmzvw1r64r4y0xh1fiyhaqbx5q4lzpawqaggra4w9igdl8"; depends=[ape seqinr]; }; AnnuityRIR = derive2 { name="AnnuityRIR"; version="1.0-0"; sha256="0yvfqzwhm5nhywfhzkxkfm07c0qi6z21j1cdaypz89qn567aj1d9"; depends=[actuar EnvStats fitdistrplus mc2d tseries]; }; AntAngioCOOL = derive2 { name="AntAngioCOOL"; version="1.2"; sha256="1krwms0y3xppc2y4m0az51wcbh4jq7mlr0jwinp66w8gh4k3qnp2"; depends=[caret rJava rpart RWeka]; }; @@ -202,13 +202,14 @@ in with self; { AovBay = derive2 { name="AovBay"; version="0.1.0"; sha256="110y9wbqr0m9b6wr1c5mncrdjpg247308989bswkqnim2msvnzcf"; depends=[BayesFactor BH broom car dplyr DT highcharter htmltools moments nortest purrr Rcpp RcppEigen RcppParallel reshape rstan rstantools shiny shinycssloaders shinydashboard shinydashboardPlus StanHeaders stringr tibble waiter]; }; ApacheLogProcessor = derive2 { name="ApacheLogProcessor"; version="0.2.3"; sha256="0h4snigh1yhp34vw52h4b6qbh9c4cvwz2cx8fwvbnw6lslmg5cgv"; depends=[doParallel foreach stringr]; }; AppliedPredictiveModeling = derive2 { name="AppliedPredictiveModeling"; version="1.1-7"; sha256="1wi0sw5w1c51rmh9z98wdpk5rgzsylkkb6g019djiwxvj92l99hh"; depends=[CORElearn ellipse lattice MASS plyr reshape2]; }; + AquaBPsim = derive2 { name="AquaBPsim"; version="0.0.1"; sha256="0bf83kp8j7il5q9kr8r0pxlnsf6l9nvhgkny4y5wgc8pbki0dsmz"; depends=[MASS matlib pedigree readxl]; }; AquaEnv = derive2 { name="AquaEnv"; version="1.0-4"; sha256="07yx7mbslqgqg7ky67n3xfhskaj7s3w5mvl7xkih48xbsdlmxi4l"; depends=[minpack_lm]; }; ArArRedux = derive2 { name="ArArRedux"; version="1.0"; sha256="11h88gnj54cn5fbxf163s8kjqc1q452nzb218fjlwsxxwzaz5gbr"; depends=[]; }; ArCo = derive2 { name="ArCo"; version="0.3-1"; sha256="1afjdmcalx3m19jlvqs83fg5qlds59l5zzg3pzk13qk31r0hz7mk"; depends=[boot glmnet Matrix]; }; ArDec = derive2 { name="ArDec"; version="2.0"; sha256="14niggcq7xlvpdhxhy8j870gb11cpk4rwn9gwsfmcfvh49g58i80"; depends=[]; }; ArchaeoChron = derive2 { name="ArchaeoChron"; version="0.1"; sha256="1qma2432mm73h72g9ah1k02wlcb6yrhc6mpai9nj7v58s126ffxn"; depends=[ArchaeoPhases Bchron coda rjags]; }; - ArchaeoPhases = derive2 { name="ArchaeoPhases"; version="1.5"; sha256="1jp5ip595vvni1iqqm5wiqmqw9g2d1vvvwl06cr8qj8yh4n6xsfw"; depends=[coda digest dplyr DT ggalt ggplot2 ggthemes gplots hdrcde magrittr readr reshape2 shiny shinythemes tibble toOrdinal]; }; - ArchaeoPhases_dataset = derive2 { name="ArchaeoPhases.dataset"; version="0.1.0"; sha256="1bwfw3azhz4cbcinimj1nnmz04zw4lmn3bh419w73jmcswqrym0n"; depends=[]; }; + ArchaeoPhases = derive2 { name="ArchaeoPhases"; version="1.6"; sha256="0yhvk5lc80fdhcc0m2rp7li0l370c6d1ka0hf00nwcf4xdmd9hsy"; depends=[coda digest dplyr DT ggalt ggplot2 ggraph ggthemes gplots gtools hdrcde magrittr readr reshape2 shiny shinythemes tibble toOrdinal]; }; + ArchaeoPhases_dataset = derive2 { name="ArchaeoPhases.dataset"; version="0.2.0"; sha256="0yffzc9jmyiil3p0bvf0fpq64mn55swcnizi3bgsl44d4j93y68q"; depends=[]; }; Arothron = derive2 { name="Arothron"; version="2.0.3"; sha256="0rb1n9pmp7q2wdihn26kbpyvyznlk8mrs8c26l1ar4q29jw44rw4"; depends=[abind alphashape3d compositions doParallel foreach geometry Morpho rgl Rvcg stringr vegan]; }; AsioHeaders = derive2 { name="AsioHeaders"; version="1.16.1-1"; sha256="0hp08v6if476745v2mk9k2sp1ikiac94fcnp8v9jdcyx954fqqlq"; depends=[]; }; AssetCorr = derive2 { name="AssetCorr"; version="1.0.4"; sha256="0r98li2lxhfap1hn6h0l78phpm9m1nlcqhwzpq0ahhw0b1rd4qkf"; depends=[boot ggplot2 knitr mvQuad mvtnorm numDeriv qpdf Rdpack VineCopula]; }; @@ -219,7 +220,7 @@ in with self; { AsthmaNHANES = derive2 { name="AsthmaNHANES"; version="1.1.0"; sha256="106c6fh20s98fzixs4jpa4d413himrfg31rzwsxp72yldqxg70fx"; depends=[]; }; AsyK = derive2 { name="AsyK"; version="1.5.5"; sha256="0mr09gfxq2xsdrh7h28fkczhs44m367gf7zj09kc5lc5zwd9fs83"; depends=[DELTD]; }; AsynchLong = derive2 { name="AsynchLong"; version="2.1"; sha256="111kg1cacqlz4df1lnijybnrifjscjm78ji9p0ia615gacvdcfxa"; depends=[]; }; - AtmChile = derive2 { name="AtmChile"; version="0.2.0"; sha256="0hrga00jsg6k7cjck7a4pqj0gx8n4issblp372vxhnpa5slqy1gg"; depends=[data_table DT lubridate openair plotly shiny shinycssloaders]; }; + AtmChile = derive2 { name="AtmChile"; version="0.2.1"; sha256="1f4csk8qa6pimyhycnbd7jyj85gzadcxlfq8bfmjrs7rqydx7bqh"; depends=[data_table DT lubridate openair plotly shiny shinycssloaders]; }; AtmRay = derive2 { name="AtmRay"; version="1.31"; sha256="162078jd032i72sgaar9hqcnn1lh60ajcqpsz4l5ysxfkghcxlh8"; depends=[]; }; AugmenterR = derive2 { name="AugmenterR"; version="0.1.0"; sha256="0hi501p8ksaqzc9dq16dbmkz50kakgw3k0awdkbpci5can2sqvfl"; depends=[]; }; AurieLSHGaussian = derive2 { name="AurieLSHGaussian"; version="0.2.0"; sha256="0dzwqv396inbx4r6758vr4gip1y42ahavspadgm4xhafvipg73rb"; depends=[flexclust igraph lsa reshape2 stringdist]; }; @@ -265,7 +266,7 @@ in with self; { BASS = derive2 { name="BASS"; version="1.2.2"; sha256="14zimfdkpsil22n1z4ldpi9smmja5kf7qqlklr5sr7y5avnh0hd9"; depends=[hypergeo truncdist]; }; BASiNET = derive2 { name="BASiNET"; version="0.0.4"; sha256="0pmn4znqhpav729ai7zr027a7sx6bz2lmlk086crmwm1fnwipqq4"; depends=[Biostrings igraph randomForest rJava rmcfs RWeka]; }; BASiNETEntropy = derive2 { name="BASiNETEntropy"; version="0.99.1"; sha256="1jacfcnl86frnrnhil4xx8hi7v2l0na7ldb8nfhic1cdrmz323jr"; depends=[Biostrings igraph randomForest]; }; - BAT = derive2 { name="BAT"; version="2.7.1"; sha256="03p2nfws16ya9zxqdnx7v02pvd0hqh34j6g0xk72wa2kpx4lv0jr"; depends=[ape geometry hypervolume MASS nls2 raster vegan]; }; + BAT = derive2 { name="BAT"; version="2.8.0"; sha256="102z5x2c1dvmizza4zbzldimxl0vrvr9dnsm9jq7k9ml2mbipv3l"; depends=[ape geometry hypervolume MASS nls2 raster vegan]; }; BAYSTAR = derive2 { name="BAYSTAR"; version="0.2-9"; sha256="0crillww1f1jvhjw639sf09lpc3wpzd69milah143gk9zlrkhmz2"; depends=[coda mvtnorm]; }; BAwiR = derive2 { name="BAwiR"; version="1.2.7"; sha256="1vvym7bbfbi1x91962nfcqql0fiyv4svdk5329rq43nnh188i456"; depends=[Anthropometry dplyr ggplot2 ggthemes httr lubridate magrittr plyr purrr reshape2 rvest rworldmap scales stringi stringr tibble tidyr xml2]; }; BB = derive2 { name="BB"; version="2019.10-1"; sha256="0kf9sfsm3n036a8a8gjfpc9qdryvadb019kqjh80n1szdv7bdl04"; depends=[quadprog]; }; @@ -287,7 +288,6 @@ in with self; { BCHM = derive2 { name="BCHM"; version="1.00"; sha256="1nyf65grcyf74sixixzl12gylk2rzh7n5id4mbhim4lzdm4j272i"; depends=[cluster coda crayon knitr plyr rjags]; }; BCRA = derive2 { name="BCRA"; version="2.1.2"; sha256="17h0ara1y3fh2xyhjarbw3b549v6kq108bg946ndh7kjykara9dd"; depends=[]; }; BCSub = derive2 { name="BCSub"; version="0.5"; sha256="0c8dlxsx23qfyygmajg2amj78ax01kb3808d9hvy7g3hkgp2i2fp"; depends=[MASS mcclust nFactors Rcpp RcppArmadillo]; }; - BCT = derive2 { name="BCT"; version="1.1"; sha256="058iir5mhgc7zy1nha8g6299ya9jvg1skxj3flgn3b97snjx5qky"; depends=[igraph Rcpp stringr]; }; BCellMA = derive2 { name="BCellMA"; version="0.3.4"; sha256="1njprs7ksv0w18ffs0agz0290aa2akw48225iaa3bjhbl08dpidl"; depends=[ggplot2 reshape2]; }; BCgee = derive2 { name="BCgee"; version="0.1"; sha256="0ad0dj2ymgvkmcmq3jlpmn0pgigdql0xgvcwsbpdydv33a6snr04"; depends=[]; }; BClustLonG = derive2 { name="BClustLonG"; version="0.1.3"; sha256="1p6fm60vhs9l3b120h2l7nz4rf4ckhka7124kzwjd7znax2a336g"; depends=[lme4 MASS mcclust Rcpp RcppArmadillo]; }; @@ -323,6 +323,7 @@ in with self; { BHTSpack = derive2 { name="BHTSpack"; version="0.6"; sha256="01y3ly83i70lkg2kgbw1r7r1g4k9rk41qyzzscbp8zgc9z63ll8z"; depends=[R2HTML xtable]; }; BI = derive2 { name="BI"; version="1.0.0"; sha256="192qdw2ag8sdw5v7xsc19y2a6w7gs58lnlh0yakc2i0jjad3iyw5"; depends=[]; }; BICORN = derive2 { name="BICORN"; version="0.1.0"; sha256="0mqk8vgp6jdk7f0paa06yqlibkd1y3vs69pg7i9mkvxmda7p4nkq"; depends=[]; }; + BIEN = derive2 { name="BIEN"; version="1.2.5"; sha256="0s98n6zbf48vssd3h63k6kashcxv1kawcb026n0ngsfpc5dv6i48"; depends=[ape DBI doParallel fasterize foreach raster rgdal rgeos RPostgreSQL sf sp]; }; BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="3.3-12"; sha256="1kphczvj3rxyjvi93cx2j714scvmmpqv5wrg5pdyy8l891jxsr89"; depends=[miceadds Rcpp RcppArmadillo]; }; BIGDAWG = derive2 { name="BIGDAWG"; version="3.0.3"; sha256="1zbikvhyaksbddv2kz8nqkidjy4qsfp6a8wwyxjy5a0wcnqnwsxf"; depends=[haplo_stats httr XML]; }; BIGL = derive2 { name="BIGL"; version="1.6.5"; sha256="1ksp88nspjd2si0kicv3j6fvb8i46phgpf6mw8ihfxkn9mrjbs2v"; depends=[ggplot2 MASS minpack_lm nleqslv numDeriv progress rgl robustbase scales]; }; @@ -331,6 +332,7 @@ in with self; { BIOM_utils = derive2 { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; }; BIOMASS = derive2 { name="BIOMASS"; version="2.1.7"; sha256="015gfn7b0viymrb06q33gwz8ljpiwawrdscb2q2bk0j6vi1gnncx"; depends=[data_table jsonlite minpack_lm proj4 rappdirs raster sp]; }; BIOdry = derive2 { name="BIOdry"; version="0.8"; sha256="1zga8g50wjnnz2h9b3ak9q67qnl1f14cq6hvdzf9f84pphsnpasa"; depends=[ecodist nlme]; }; + BISdata = derive2 { name="BISdata"; version="0.1-1"; sha256="0h0fw2qhv0jq9h7mig7rfg5w9gc9q3hz6jl5n3v85yjkw5fxfdns"; depends=[]; }; BKPC = derive2 { name="BKPC"; version="1.0.1"; sha256="17gmhf6qq8jn2xzkqvjq60xzy0slz6kgfpd0d6hlpnf30ww7q923"; depends=[kernlab]; }; BLCOP = derive2 { name="BLCOP"; version="0.3.3"; sha256="08y9vmx3cknjvk6ngfwxlfnc03cqpj97i1ijrs1cw5sahjc0vmhc"; depends=[fBasics fMultivar fPortfolio knitr MASS quadprog rmarkdown RUnit timeSeries]; }; BLModel = derive2 { name="BLModel"; version="1.0.2"; sha256="0l5f2v5ggadmrci3qhhmxm3j9i6jii0anq5rv5vk50y2qzii2q15"; depends=[]; }; @@ -372,15 +374,15 @@ in with self; { BRDT = derive2 { name="BRDT"; version="0.1.0"; sha256="1yv2fh4cc9h35l8cngpxnqa83a7bx79pr7c1gp9h84p1pigg8282"; depends=[]; }; BRETIGEA = derive2 { name="BRETIGEA"; version="1.0.3"; sha256="0q4phggz6smzd294znr1fp0gskpcwdbd6hnvvl3q3z1h7cpf40sn"; depends=[]; }; BRINDA = derive2 { name="BRINDA"; version="0.1.3"; sha256="1nq7wlwwlyfff0rn4yv8bws0ibd7wssb1jd6ccc7xvhdb2bqv9kc"; depends=[berryFunctions data_table dplyr Hmisc rlang]; }; - BRISC = derive2 { name="BRISC"; version="1.0.2"; sha256="1qkb98wlqyhi378darx62f5ymsr290pqq82msqwcj6ks0xi9mj2s"; depends=[matrixStats pbapply RANN rdist]; }; + BRISC = derive2 { name="BRISC"; version="1.0.4"; sha256="1gvasqx9876jirh37imvxhlnr2qri0gd5nz5fjk9d0vj15w7kxsc"; depends=[matrixStats pbapply RANN rdist]; }; BRL = derive2 { name="BRL"; version="0.1.0"; sha256="13qi78v3057qn4hfby14sp26hy3ibl50f06x8gpak6gi76g8bhwi"; depends=[]; }; BRugs = derive2 { name="BRugs"; version="0.9-1"; sha256="1m3dlw6201bzf6fcm4qscpsmgjkpidwiil3m4iwfn0b0iv3dclcv"; depends=[coda]; }; BSBT = derive2 { name="BSBT"; version="1.2.0"; sha256="1whf34fbnsjargby8dq2784rj9mj80ldjgdd3nm897h05h17bs9f"; depends=[expm igraph MASS]; }; BSDA = derive2 { name="BSDA"; version="1.2.1"; sha256="0vcf3h1rkgs0mr6rri2zjkb3c62dmndm281zh4ddz2vyw27wpwg2"; depends=[e1071 lattice]; }; BSGS = derive2 { name="BSGS"; version="2.0"; sha256="08m8g4zbsp55msqbic4f17lcry07mdn0f5a61zdcy2msn2ihzzf9"; depends=[batchmeans MASS plyr pscl]; }; BSGW = derive2 { name="BSGW"; version="0.9.2"; sha256="1q6qvm9yxh35wywrzs3kr31jsa0bmbwrqh0r3qjc0dzi6q8n6pjy"; depends=[doParallel foreach MfUSampler survival]; }; - BSL = derive2 { name="BSL"; version="3.2.3"; sha256="14114fwvvjzd5h17kzdgcfbm16m00g9iqzdfjvbq74ydy5jh3bm1"; depends=[coda copula DBI doRNG foreach ggplot2 glasso gridExtra MASS mvtnorm Rcpp RcppArmadillo Rdpack stringr whitening]; }; - BSPADATA = derive2 { name="BSPADATA"; version="1.0"; sha256="1g709i0icxlxq2ljb2sm5iyc8ljqxadi62xc4mg702fsgl0x5ny9"; depends=[mvtnorm pscl spdep]; }; + BSL = derive2 { name="BSL"; version="3.2.4"; sha256="16w5lkzwq8b393cxga4cdcwk1f185g24k7lq0xr842g94cc8jdpl"; depends=[coda copula DBI doRNG foreach ggplot2 glasso gridExtra MASS mvtnorm Rcpp RcppArmadillo Rdpack stringr whitening]; }; + BSPADATA = derive2 { name="BSPADATA"; version="1.1.0"; sha256="190zmjvw5q5gg47g21n2imclz1qg585cvjxl501mm910gx50rldb"; depends=[coda mvtnorm pbapply pscl spdep]; }; BSS = derive2 { name="BSS"; version="0.1.0"; sha256="1lxmrdmr6c0niqz61kc9ybzszprn66jyinfy4dr9r6i161gvs4qg"; depends=[hypergeo MASS phangorn]; }; BSSasymp = derive2 { name="BSSasymp"; version="1.2-3"; sha256="1nqj8w8ilyhladjzhjp1rhi3ff7ik1m76pdhgs16ph7pzdw36w6i"; depends=[fICA JADE]; }; BSSprep = derive2 { name="BSSprep"; version="0.1"; sha256="0dkhx8vx9kg902i6nzkzbighf2szq12l0p8iwinlpb2qdf526lk6"; depends=[Rcpp RcppArmadillo]; }; @@ -393,7 +395,7 @@ in with self; { BTYDplus = derive2 { name="BTYDplus"; version="1.2.0"; sha256="1shai7kij20g3isd6l29i696pkzymr0qq2i9gzfsxmvdb4g4pcm2"; depends=[bayesm BTYD coda data_table mvtnorm Rcpp]; }; BTdecayLasso = derive2 { name="BTdecayLasso"; version="0.1.0"; sha256="0x1s2zvv3vnapk5wp8582zwflsqvgc8khkvl5ch9i70v739jxp15"; depends=[ggplot2 optimr]; }; BUCSS = derive2 { name="BUCSS"; version="1.2.1"; sha256="1nf0xpy5r49yfd0xydzxxxrc6isj14s8lswrf5nhh7g60nkkwcxr"; depends=[]; }; - BVAR = derive2 { name="BVAR"; version="1.0.2"; sha256="12x6jkfgmskhvr8xgyfik8i5hkb8garq27k3nyvl69ickhgwrjk3"; depends=[mvtnorm]; }; + BVAR = derive2 { name="BVAR"; version="1.0.3"; sha256="0x0cb0hj7a7lww0mvgj2i907ww390wyznwqqn5b5dk0pgi28wy5z"; depends=[mvtnorm]; }; BVARverse = derive2 { name="BVARverse"; version="0.0.1"; sha256="00nghvd5bavmn5hw89pcz20x5kbpxr707r5yvvsakn77rdis37ig"; depends=[BVAR generics ggplot2 rlang tidyr]; }; BVSNLP = derive2 { name="BVSNLP"; version="1.1.9"; sha256="1k2sr9wq0q7lq2hmgp75hzxy6v688lw5npwvpma88975yqi6ghiw"; depends=[doParallel foreach Rcpp RcppArmadillo RcppEigen RcppNumerical]; }; BWGS = derive2 { name="BWGS"; version="0.2.1"; sha256="1473lvkmpf2dsgnccwl5a8wp9yvddciqdql4naba4lwghimxy39w"; depends=[BGLR brnn e1071 glmnet randomForest rrBLUP stringi]; }; @@ -402,6 +404,7 @@ in with self; { BaM = derive2 { name="BaM"; version="1.0.2"; sha256="017x6i8glbbx8aqglyglv9pvcss4vg6l6rnwzaa4vbln95y4582d"; depends=[dlm MASS mice]; }; BaPreStoPro = derive2 { name="BaPreStoPro"; version="0.1"; sha256="0zyyyrr5h8dhjsmgaii8jmb8ignvixpc9nzbfishw9yymjswvm57"; depends=[]; }; BaSTA = derive2 { name="BaSTA"; version="1.9.4"; sha256="1j092gsdip7rpw0g74ha0kjsrqpp5swi7wd4sxlmx6zarcqnxlal"; depends=[snowfall]; }; + BaSkePro = derive2 { name="BaSkePro"; version="0.1.0"; sha256="06wnl128anr0isq07qn2xr426c8iybmrbixz93hxx1pshcm64f37"; depends=[MASS]; }; BacArena = derive2 { name="BacArena"; version="1.8.2"; sha256="1fv3hmr8frqgdl22cvp5w5089ppmqzw42llw2ls054dvsdadlqm9"; depends=[deSolve ggplot2 glpkAPI igraph Matrix plyr R_matlab Rcpp RcppArmadillo RcppEigen ReacTran reshape2 stringr sybil]; }; BalanceCheck = derive2 { name="BalanceCheck"; version="0.2"; sha256="0aal641vfbjk3w6ipwbqqmm9nnxs962hjmpph9wnqaqk5r6s7brs"; depends=[ade4 mvtnorm]; }; BalancedSampling = derive2 { name="BalancedSampling"; version="1.5.5"; sha256="01ayvjfs83dbnk0m9xb7y9rnxxpfpb6w4qjdffd6hdhcn2s5f73d"; depends=[Rcpp SamplingBigData]; }; @@ -417,7 +420,7 @@ in with self; { BatchGetSymbols = derive2 { name="BatchGetSymbols"; version="2.6.1"; sha256="0jm4bswczmha7p8xb78n4q3wxyjxmi7ya5zrfm0gb31g7r275wba"; depends=[crayon curl dplyr furrr future lubridate purrr quantmod rvest scales stringr tibble tidyr XML zoo]; }; BatchJobs = derive2 { name="BatchJobs"; version="1.8"; sha256="1zz4sspj596pijxlz321g0jy2rg9ki83j6fihbwisjwr66p2vk1m"; depends=[backports BBmisc brew checkmate data_table DBI digest RSQLite sendmailR stringi]; }; BayHaz = derive2 { name="BayHaz"; version="0.1-3"; sha256="08ilghlkgyma5758yw7mdgqycqcillqmx73knzzdlg2kzc77dvg6"; depends=[]; }; - BayLum = derive2 { name="BayLum"; version="0.2.0"; sha256="1i0pfqygn8s6r63089wgs74fx6cwm7ypascr70g4zwgbgkp8l80d"; depends=[ArchaeoPhases coda hexbin KernSmooth Luminescence rjags runjags]; }; + BayLum = derive2 { name="BayLum"; version="0.2.1"; sha256="0h0x18al2rqs6wjf4jayc1qv8lkn7rvkbjmr5h1gcggn2c4byyjn"; depends=[ArchaeoPhases coda hexbin KernSmooth Luminescence rjags runjags]; }; BaySIC = derive2 { name="BaySIC"; version="1.0"; sha256="023ji6q1nvksmhp3ny8ad39xxccc0a1rv9iaiaagwavgzzc0pjd9"; depends=[fields poibin rjags]; }; BayesARIMAX = derive2 { name="BayesARIMAX"; version="0.1.1"; sha256="1rcfq0r8sqiqs65mbpcr8i4667cdb50k6bx6wdh9spr0djh8gfv0"; depends=[coda forecast]; }; BayesBEKK = derive2 { name="BayesBEKK"; version="0.1.0"; sha256="0fykcmf54820krwy7q573gmlcrx96i94knx7rgzc83i287lnpnfg"; depends=[coda MTS mvtnorm]; }; @@ -470,10 +473,9 @@ in with self; { BayesTree = derive2 { name="BayesTree"; version="0.3-1.4"; sha256="0saca1ln582szqzc2c78z24b1lszzhc9hvsin73kb7r2dlg5ciii"; depends=[nnet]; }; BayesTreePrior = derive2 { name="BayesTreePrior"; version="1.0.1"; sha256="13igmvw1wj8kzfijzsrhdqr52kv4vqrm91i71ay6f7jnkry3spaw"; depends=[]; }; BayesTwin = derive2 { name="BayesTwin"; version="1.0"; sha256="026blnhihbx9bpd63mxhbp0kpvj0lwbj7mg72alyfr2jnrh1n3lp"; depends=[coda foreign matrixStats rjags]; }; - BayesValidate = derive2 { name="BayesValidate"; version="0.0"; sha256="1gli65avpkb90asx92l1yjbwaxcsyb920idyjwgd2sl2b3l657ly"; depends=[]; }; BayesVarSel = derive2 { name="BayesVarSel"; version="2.0.1"; sha256="1107amhj3bclc434qizffjfmsa2w36qkp6gq7vgl0hwv0ncc0vyn"; depends=[MASS mvtnorm]; }; BayesX = derive2 { name="BayesX"; version="0.3-1"; sha256="0g4cdkvicqzg75qgr62j89dc9mni38ai7705j6jbfx59vn6dbrr5"; depends=[coda colorspace maptools shapefiles sp]; }; - BayesXsrc = derive2 { name="BayesXsrc"; version="3.0-1.1"; sha256="00q7hwan8db1a3wxczksl52bghyhfql3wj7sjvq50zsp0pjr6vng"; depends=[]; }; + BayesXsrc = derive2 { name="BayesXsrc"; version="3.0-2"; sha256="04p17d87b2gg3p08jmdmg570ppdzci8r4qxcq115qs58bvqih47v"; depends=[]; }; BayesianAnimalTracker = derive2 { name="BayesianAnimalTracker"; version="1.2"; sha256="1pgjijqznfdpvw296h5vksnxgspxs7qhy6s84ww7abnlhg59bz5s"; depends=[TrackReconstruction]; }; BayesianFROC = derive2 { name="BayesianFROC"; version="1.0.0"; sha256="03f0cj528cb4rhkzs4vw4k1wq4gxb3zq121pamjwhbal93b8mz7a"; depends=[bridgesampling car crayon fastDummies ggplot2 knitr pracma Rcpp rhandsontable rstan shiny shinydashboard shinyjs shinythemes]; }; BayesianGLasso = derive2 { name="BayesianGLasso"; version="0.2.0"; sha256="09yb1qqx6qlsspk3ndrcqxy0956iqznw0rmyvqxgxxp3zd3y21xp"; depends=[MASS statmod]; }; @@ -484,7 +486,7 @@ in with self; { BayesianTools = derive2 { name="BayesianTools"; version="0.1.7"; sha256="0330bbnny35h4gsmwg31p3n3i511wrckzmp174ydm55pvsdkhjdg"; depends=[bridgesampling coda DHARMa ellipse emulator gap IDPmisc MASS Matrix msm mvtnorm numDeriv Rcpp tmvtnorm]; }; Bayesiangammareg = derive2 { name="Bayesiangammareg"; version="0.1.0"; sha256="0b0fqmig7vgmlrq2884q0apfd89nn5k4dj8rqjizkkbw4qpzmylb"; depends=[mvtnorm]; }; Bayesiantreg = derive2 { name="Bayesiantreg"; version="1.0"; sha256="0m8snwhjskwxdm0a2wsmf1j7d0xxvg4sh0ix64zss71l610wica7"; depends=[MASS Matrix mvtnorm]; }; - Bayesrel = derive2 { name="Bayesrel"; version="0.7.1"; sha256="080wxv9ik1ph7h74xfsa57dsddsvlvag0iybgrdajkn0svc5qb9m"; depends=[coda LaplacesDemon lavaan MASS Rcpp RcppArmadillo Rdpack]; }; + Bayesrel = derive2 { name="Bayesrel"; version="0.7.4"; sha256="1mjfjyvzacbc4gmg69vr6mdkxl9133dl13czy4dvf6phgfwqgz2b"; depends=[coda LaplacesDemon lavaan MASS progress Rcpp RcppArmadillo Rdpack]; }; BcDiag = derive2 { name="BcDiag"; version="1.0.10"; sha256="1gyinmx5wn2kk70hiy28ghilkhfirfjbfqdrqq5h3wfb4khnq6pz"; depends=[fabia]; }; Bchron = derive2 { name="Bchron"; version="4.7.6"; sha256="1s8bx9a5rpcrw0msnjf565crz3d2fykvy5fj1chbqxzjh7qm865w"; depends=[checkmate coda dplyr ggforce ggplot2 ggridges magrittr MASS mclust purrr scales stringr]; }; BeSS = derive2 { name="BeSS"; version="2.0.3"; sha256="09zxpzcaj13fn38cwd0xk0254aphb3jn1wdwn9hiq9vapfsgn0dx"; depends=[glmnet Matrix Rcpp RcppEigen survival]; }; @@ -496,24 +498,25 @@ in with self; { Bestie = derive2 { name="Bestie"; version="0.1.4"; sha256="1w8d1zrxp5v0wlldzj0kmcrdwyn5f2klbdpkhd79hvpf3lpq6h68"; depends=[BiDAG mvtnorm Rcpp]; }; BetaBit = derive2 { name="BetaBit"; version="1.4"; sha256="11cvl9m20ycc0zsxbdapjflgsiaxx4dzaygjhv948adjfi5fycbn"; depends=[digest]; }; BetaPASS = derive2 { name="BetaPASS"; version="1.1-1"; sha256="17q1bfmijv38zyaj5fxlylf5zmkqry4ca9wm5km6zpksgsg2kjjq"; depends=[betareg ggplot2 pbapply]; }; + BetterReg = derive2 { name="BetterReg"; version="0.1.0"; sha256="0v9vw77h469352w0apy3ybwcjq64qdrizlrlmxk8c1x9kc624264"; depends=[car dplyr]; }; BeviMed = derive2 { name="BeviMed"; version="5.8"; sha256="12ngw3b05mqsf95svvkk5s8w0fs1yfbpbfk8x9a9v2yva5n65y7a"; depends=[Matrix Rcpp]; }; BeyondBenford = derive2 { name="BeyondBenford"; version="1.4"; sha256="04jdx35955g44v2is6zxfw1gip7zh3li8divc7iy5hl0jrshfhv3"; depends=[ggplot2]; }; Bhat = derive2 { name="Bhat"; version="0.9-10"; sha256="1vg4pzrk3y0dk1kbf80mxsbz9ammkysh6bn26maiplmjagbj954v"; depends=[]; }; BiBitR = derive2 { name="BiBitR"; version="0.3.1"; sha256="0wfwph6nw12hb43j14i9ycj8m2zn0m5ynp7afq9cray8rbgvxfv6"; depends=[biclust cluster dendextend foreign lattice randomcoloR viridis]; }; BiDAG = derive2 { name="BiDAG"; version="2.0.4"; sha256="1vbkjz7sdmnqyhc5br8d0g1dgrx59v0lqjbk9ya64c2c6izhlq3c"; depends=[graph pcalg RBGL Rcpp Rgraphviz]; }; - BiDimRegression = derive2 { name="BiDimRegression"; version="2.0.0"; sha256="0k0708z6xn04zjkc4sk15649wji6hl5q4rvd28sz5kbq7z54j1j5"; depends=[Formula]; }; + BiDimRegression = derive2 { name="BiDimRegression"; version="2.0.1"; sha256="00zcvk5v8rn3dp02sivs5z7cch9y8csp5cjhhs4ragdgcry0c3i5"; depends=[Formula]; }; BiProbitPartial = derive2 { name="BiProbitPartial"; version="1.0.3"; sha256="0y19b8bkwr7rpygmj03013slmfbyd7aj6714hm14w5rdbnckymw3"; depends=[coda Formula mvtnorm numDeriv optimr pbivnorm Rcpp RcppArmadillo RcppTN]; }; BiSEp = derive2 { name="BiSEp"; version="2.2"; sha256="1ha7rc1q54dr2xl4bpkiwl703igmmi9qphsgv2h0flq7iz0gr351"; depends=[AnnotationDbi GOSemSim mclust]; }; BiTrinA = derive2 { name="BiTrinA"; version="1.3"; sha256="0sjq5a21vpsjs0ad0v8gsqlbk3n8virg1hzj0nvgm3h3xqhymh1d"; depends=[diptest]; }; - BiasCorrector = derive2 { name="BiasCorrector"; version="0.2.0"; sha256="1kkadpwcbd1x5vgfrhwf1560fc4b624wiq8ciciakb8l5hyw53bq"; depends=[data_table DT magrittr rBiasCorrection shiny shinydashboard shinyjs]; }; + BiasCorrector = derive2 { name="BiasCorrector"; version="0.2.1"; sha256="1f1r1s7rbia6n7v5xnz1kj459n34xdz0qwkf5pipknmjzsc9f4nj"; depends=[data_table DT magrittr rBiasCorrection shiny shinydashboard shinyjs]; }; BiasedUrn = derive2 { name="BiasedUrn"; version="1.07"; sha256="13i2lgfnjhlbbm2yxfc2l5hswqw6x03pwba5csjmirv8kpjw4xr3"; depends=[]; }; BibPlots = derive2 { name="BibPlots"; version="0.0.8"; sha256="0zvbyh8spr0ywj64b2rc8jcq4fgn87858km4mkkh17g30ympg767"; depends=[]; }; BifactorIndicesCalculator = derive2 { name="BifactorIndicesCalculator"; version="0.2.2"; sha256="1vnwksw0j4lc2knlcmm5748pf4d7r44sn34s1mrv9p50hlnkk85p"; depends=[lavaan mirt mnormt MplusAutomation tidyr]; }; - BigQuic = derive2 { name="BigQuic"; version="1.1-10"; sha256="0gq55419vwd52k626igjjvb6fwmq3q5sc57x0r56qippzgljqlwv"; depends=[Matrix Rcpp scalreg]; }; + BigQuic = derive2 { name="BigQuic"; version="1.1-11"; sha256="1dxzkj26hd05mi02i35k7dknlikjfbsgvjrqwf42k3kjpf501xh4"; depends=[Matrix Rcpp scalreg]; }; BigVAR = derive2 { name="BigVAR"; version="1.0.6"; sha256="03d5a61clkngq67mkf2pyjj3k633kxp7g37myfplbxi55bdfmdlz"; depends=[lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; }; BimodalIndex = derive2 { name="BimodalIndex"; version="1.1.9"; sha256="1m1dcj0ryjicaqjlkch7aymsklmvjvn2dvnbssi1cpi54bzn8l7g"; depends=[mclust oompaBase]; }; BinGSD = derive2 { name="BinGSD"; version="0.0.1"; sha256="0ygr5na7s82xa6vv9f3j6ns5sfhdacyykl1fg422lpkwbss39dnn"; depends=[mvtnorm]; }; - BinMat = derive2 { name="BinMat"; version="0.1.3"; sha256="0wfvi02srdjchnsyi0vd8ym1jck68xmysfqn97d7h6psnxngq9vi"; depends=[ggpubr magrittr MASS pvclust tibble]; }; + BinMat = derive2 { name="BinMat"; version="0.1.5"; sha256="1brgv0zmprvwx6x670mmxxlk50nh4ds63bip48mlh0p1qv8pm9db"; depends=[ggpubr MASS pvclust tibble]; }; BinNonNor = derive2 { name="BinNonNor"; version="1.5.3"; sha256="0ijjv2w4bx0i3mks7s4vii21hc9iq69p3jld1qg68a6115njsm24"; depends=[BB corpcor Matrix mvtnorm]; }; BinNor = derive2 { name="BinNor"; version="2.3.3"; sha256="07r7nf4ygilp470z93x9dc5zddc96m2dkw6d2s4an8fbr4pljc1y"; depends=[corpcor Matrix mvtnorm psych]; }; BinOrdNonNor = derive2 { name="BinOrdNonNor"; version="1.5.2"; sha256="17981jfjjgsfzjwbv9cjgqdha846rf03nfd8kgj4wiljgz855mz9"; depends=[BB corpcor GenOrd Matrix mvtnorm OrdNor]; }; @@ -568,7 +571,7 @@ in with self; { BoltzMM = derive2 { name="BoltzMM"; version="0.1.4"; sha256="17nsjr2y8nniaxd6f13g85gb9rshar72qqp45yh2ygg4zrx1d226"; depends=[BH Rcpp RcppArmadillo]; }; BonEV = derive2 { name="BonEV"; version="1.0"; sha256="0lmgrg53b0abb5hidyjjmwn7lf2ani84k9fil7g6j6mdajjhh1b7"; depends=[qvalue]; }; BondValuation = derive2 { name="BondValuation"; version="0.1.0"; sha256="1sgnf5a6rm1br6i82bmp7s044012bwfxa9yb6bjkq8kr83mf7i6v"; depends=[Rcpp timeDate]; }; - BoneProfileR = derive2 { name="BoneProfileR"; version="2.0"; sha256="067fvsrldg79csvjn3qizfrsggm2s9kn3wzf5516ggq6v5k0842a"; depends=[HelpersMG imager knitr rmarkdown shiny]; }; + BoneProfileR = derive2 { name="BoneProfileR"; version="2.1"; sha256="1wdwf15x6rz7dciqyyqjlgzgqxas9lzmg3410qhbvcslf6w9gq0y"; depends=[HelpersMG imager knitr rmarkdown shiny]; }; BoolFilter = derive2 { name="BoolFilter"; version="1.0.0"; sha256="14z4fzf8p4wgi939qs6v39a3xizccjcx7j4szsydllpkvxbwggbw"; depends=[BoolNet Rlab]; }; BoolNet = derive2 { name="BoolNet"; version="2.1.5"; sha256="11fysc39vfk3zb9qklryi8gl42c3hqgzlvci4jj0zkqnm0v9amqk"; depends=[igraph XML]; }; Boom = derive2 { name="Boom"; version="0.9.7"; sha256="0zw5i6xigpg8jnk4k2w8iqnxlbgk8zzd5dmfmi5wjc153vgssk12"; depends=[MASS]; }; @@ -580,7 +583,6 @@ in with self; { Boptbd = derive2 { name="Boptbd"; version="1.0.5"; sha256="1p786avc37yq5g01zh6sqx7b1rvbxrh6gbxsad4bdvr12cjdsss6"; depends=[igraph MASS Matrix]; }; Boruta = derive2 { name="Boruta"; version="7.0.0"; sha256="0y2w4wb45kfnzrxcrdsiwgal9fsnlr3wad1sqdc70qv8gp921xbg"; depends=[ranger]; }; BosonSampling = derive2 { name="BosonSampling"; version="0.1.3"; sha256="0dxvjdvzv2b3763x4wrkw02q57l42286w9bg2xhcngmcpdhnkg51"; depends=[Rcpp RcppArmadillo]; }; - BoutrosLab_plotting_general = derive2 { name="BoutrosLab.plotting.general"; version="6.0.3"; sha256="0sirpdp7k28wwn5k5wyc0ib6abb5b1qpjrrk3m168x5yg1s2hqkf"; depends=[cluster e1071 gridExtra gtable hexbin lattice latticeExtra MASS]; }; BradleyTerry2 = derive2 { name="BradleyTerry2"; version="1.1-2"; sha256="0vss3ib74cz2zn1afmrvllawghj9z2ay4x1ysvk4rqvjmiia4a2i"; depends=[brglm gtools lme4 qvcalc]; }; BrailleR = derive2 { name="BrailleR"; version="0.32.1"; sha256="0hnwfn3z9d22jp9xqgz7sz3yqlay863ys9czvd07xyscqpzq973k"; depends=[devtools dplyr extrafont ggplot2 gridGraphics gridSVG hunspell knitr magrittr mathjaxr moments nortest reticulate rlang rmarkdown roloc rolocISCCNBS whisker XML xtable]; }; BrainCon = derive2 { name="BrainCon"; version="0.1.0"; sha256="10c76l14kdvcyfhph5zsrn4ayh0x454cxbn1v85jamcalp610n69"; depends=[glmnet MASS]; }; @@ -600,14 +602,15 @@ in with self; { BusinessDuration = derive2 { name="BusinessDuration"; version="0.2.0"; sha256="17923n1r3n8kp7qqzr2dv8ffax355yyc3b9f6mv2hxy6k31hrrb8"; depends=[chron]; }; BuyseTest = derive2 { name="BuyseTest"; version="2.3.10"; sha256="19mp6hyj4fdq7gmpd9jfg6rgf7mazbgxzpf9fs258s91pm35vljp"; depends=[data_table doParallel foreach ggplot2 lava prodlim Rcpp RcppArmadillo riskRegression]; }; Bvalue = derive2 { name="Bvalue"; version="1.0"; sha256="17zlllzjrcq4grggal3hlg384990n62wnflr2g21fa6hcnglwy7d"; depends=[]; }; - C443 = derive2 { name="C443"; version="3.2.2"; sha256="0fs8pcqwhb9wqwharghr05v6jvgsqln3mya2v0zzcmir6qql33v2"; depends=[cluster ggplot2 gridExtra igraph MASS partykit plyr qgraph RColorBrewer reshape2 rpart]; }; + BwQuant = derive2 { name="BwQuant"; version="0.1.0"; sha256="0pna0ppj9hkxpc2mbyy0ss7zrl5y736h5xsfkhmqr0389vmgibrj"; depends=[KernSmooth nleqslv quantreg]; }; + C443 = derive2 { name="C443"; version="3.2.3"; sha256="0zjnwkn17213x2zhflmmrplp6kr8zg04pfynpkwsgmf4rqyfyjvx"; depends=[cluster ggplot2 gridExtra igraph MASS partykit plyr qgraph RColorBrewer reshape2 rpart]; }; C50 = derive2 { name="C50"; version="0.1.6"; sha256="1d4cy6xps17c97r5hipa2ar9hrw17iq1ld7afv5fd1v2cpic086c"; depends=[Cubist partykit]; }; - CA3variants = derive2 { name="CA3variants"; version="3.0"; sha256="0n0a4rxaskz94kibcycrsg46w8r515r4pzadvlv6b43qpgwrqh92"; depends=[checkmate ggforce ggplot2 ggrepel gridExtra multichull plotly]; }; + CA3variants = derive2 { name="CA3variants"; version="3.1"; sha256="0gfr8giwb9z840gbf0xzdyd1xxjhd2m28fg4djja83kdwjf73fb5"; depends=[checkmate ggforce ggplot2 ggrepel gridExtra multichull plotly]; }; CADFtest = derive2 { name="CADFtest"; version="0.3-3"; sha256="06bwv728ckalzibxginzfica24w18m4g87i0i064m3q89ghmnlqm"; depends=[dynlm sandwich tseries urca]; }; CADStat = derive2 { name="CADStat"; version="3.0.8"; sha256="0wdglw1vyd5gz70r9ma0mwshvizv39nb4ahp8pvr70c4qqzsfhc0"; depends=[bio_infer car gdata gmodels JavaGD JGR lattice MASS quantreg rJava rpart XML]; }; CAISEr = derive2 { name="CAISEr"; version="1.0.16"; sha256="08br6hdpgf9y2fix299diwd8r3q4gylpbzll4knpxq0vi18a3hz3"; depends=[assertthat ggplot2 gridExtra pbmcapply]; }; CALANGO = derive2 { name="CALANGO"; version="1.0.8"; sha256="0i9n03km29bnhikk0a4dsh4pdchbynqmcvwzply7y2fgzs9bfwx4"; depends=[ape assertthat BiocManager dendextend DT ggplot2 heatmaply htmltools htmlwidgets knitr nlme pbmcapply pkgdown plotly rmarkdown taxize]; }; - CALF = derive2 { name="CALF"; version="1.0.16"; sha256="1y3db8yxgman6jx8ghqcqfh201zj1fykinm9rhfbgb0ixk9dq1yc"; depends=[data_table ggplot2]; }; + CALF = derive2 { name="CALF"; version="1.0.17"; sha256="021x1gp0493g6qnfih755c0xcddz77i3p22bgjlx1lpzgqmrgrki"; depends=[data_table ggplot2]; }; CALIBERrfimpute = derive2 { name="CALIBERrfimpute"; version="1.0-6"; sha256="0ghi6pkv9ki0iz4lkli3hkrsk6xiph2ha2pij6dg4wi7mcjdhsbi"; depends=[mice mvtnorm randomForest]; }; CAMAN = derive2 { name="CAMAN"; version="0.74"; sha256="0d932fbqzlxlhn7m8zfx7wr02pc7fm8398rym1jh2cdy2fk5im08"; depends=[mvtnorm sp]; }; CAMML = derive2 { name="CAMML"; version="0.1.1"; sha256="06xszdr3v41qqd2l0s3kdbzwn03054imazndplbihx5a7032gxvj"; depends=[AnnotationDbi dplyr edgeR MASS Matrix org_Hs_eg_db org_Mm_eg_db Seurat SeuratObject VAM]; }; @@ -645,7 +648,6 @@ in with self; { CDM = derive2 { name="CDM"; version="7.5-15"; sha256="159ny2dz0rf1r3k1mqlfwambffc8rx425sggf5bn51nybpzanq3l"; depends=[mvtnorm polycor Rcpp RcppArmadillo]; }; CDNmoney = derive2 { name="CDNmoney"; version="2012.4-2"; sha256="1isbvfq0lygs75y1hn3klqms8q7g1xbkcr8fgj75h1c99d4khvm6"; depends=[]; }; CDROM = derive2 { name="CDROM"; version="1.1"; sha256="0mvhqs4m8jp39x1rk31a1sqqmfq1avcnasgh8bizlyxx62igmi1b"; depends=[]; }; - CDSeq = derive2 { name="CDSeq"; version="1.0.8"; sha256="06pjp9hn9ziz4wgkaj0r0zzw69r7635j10rmnl331abc4mchpazy"; depends=[Biobase clue dirmult doParallel dplyr foreach ggplot2 ggpubr gplots iterators magrittr MASS Matrix matrixStats qlcMatrix Rcpp RcppArmadillo RcppThread rlang Seurat]; }; CDVineCopulaConditional = derive2 { name="CDVineCopulaConditional"; version="0.1.1"; sha256="1wyy324vrwipdsq0p021bj1gdhyxg09g3dkw8wv5v6rfrrs84m9k"; depends=[combinat VineCopula]; }; CDatanet = derive2 { name="CDatanet"; version="0.0.1"; sha256="05nh56w18bf1yk2i74ppslvd3307b6pqif7bbjcgm8q6nha2mrfq"; depends=[ddpcr Formula formula_tools Matrix Rcpp RcppArmadillo RcppProgress]; }; CEC = derive2 { name="CEC"; version="0.10.3"; sha256="0yypiy5xxrlckly4qpnf1wxg4hwza4y4da6y0jz4ldz918vskaci"; depends=[]; }; @@ -653,6 +655,7 @@ in with self; { CEDARS = derive2 { name="CEDARS"; version="1.90"; sha256="1fngyc08kvilfd2d75gjg0s6c5zvjywym35sk568yzxnsz89b7yy"; depends=[fastmatch jsonlite mongolite readr shiny udpipe]; }; CEGO = derive2 { name="CEGO"; version="2.4.2"; sha256="00nc6c1b6ylqlh6hm8lh8nasz7q12pqckdqbf1yq21khki9ldbll"; depends=[DEoptim fastmatch MASS Matrix ParamHelpers quadprog]; }; CENFA = derive2 { name="CENFA"; version="1.1.1"; sha256="0b1zpazbqynlnmf8k25r5bjmidymskqc96xpmwqkl23xlz1f2x3s"; depends=[doSNOW foreach magrittr pbapply raster Rcpp snow sp]; }; + CEOdata = derive2 { name="CEOdata"; version="0.2"; sha256="1zc69acy2jvawbv43wg52gnak3klavcr1yzab6rbabav5vk53vhn"; depends=[dplyr haven jsonlite stringr urltools]; }; CEoptim = derive2 { name="CEoptim"; version="1.2"; sha256="0bbjrhl63cbx1rsr5gclbqhjpnjid8ynk2ygaf1chf8z381n7650"; depends=[MASS msm sna]; }; CFAcoop = derive2 { name="CFAcoop"; version="1.0.0"; sha256="1qnqbqh3p8grp6mxhqrwfm1nf1sxhqa6pjxkpf7vk9nx40g815gn"; depends=[Hmisc]; }; CFC = derive2 { name="CFC"; version="1.1.2"; sha256="0k0685cgsd0lm7id6h216r4x236xn3nqj4h906qn2i0kvwmx4nda"; depends=[abind doParallel foreach Rcpp RcppArmadillo RcppProgress survival]; }; @@ -668,10 +671,11 @@ in with self; { CHFF = derive2 { name="CHFF"; version="0.1.0"; sha256="0jv75p1bnwsad2vpxf1zwq97al9xxhk2hpnpsilf0jn0w7g9b2d3"; depends=[]; }; CHMM = derive2 { name="CHMM"; version="0.1.1"; sha256="07fdvnwhblwvljbl2z0vs42nwki67yl5ly3fj40p50k3rnqqmavj"; depends=[mclust]; }; CHNCapitalStock = derive2 { name="CHNCapitalStock"; version="0.1.0"; sha256="1w8abj1rxkpql696dr6w19xsgxjmkm0jwnln7lp48fnxdsa424x8"; depends=[dplyr magrittr]; }; - CHNOSZ = derive2 { name="CHNOSZ"; version="1.4.1"; sha256="0q541a7gr8lg25y37qy067aik0ncay401hm7ml0sag0gwl1whi4k"; depends=[]; }; + CHNOSZ = derive2 { name="CHNOSZ"; version="1.4.3"; sha256="0hckcvrl9hk3gin5v3jbb6wp40k4vhqdnwb2z34fmaksdngnag3y"; depends=[]; }; CHOIRBM = derive2 { name="CHOIRBM"; version="0.0.2"; sha256="1ak9swfnc0i23pv6mg5bav09pb7v0afdr7h08s1pyd77wyzf95df"; depends=[ggplot2 rlang stringr]; }; CHsharp = derive2 { name="CHsharp"; version="0.4"; sha256="19mb5zzi9x4pm2z9jbha5dz4k5f1iqjv31aisyv4qh14k5ysdz2i"; depends=[KernSmooth scatterplot3d]; }; CIAAWconsensus = derive2 { name="CIAAWconsensus"; version="1.3"; sha256="0yhay4fp5lyf0sdcf807yvys17qz9cr5f5ikim25mq336p7fp03x"; depends=[Matrix mvtnorm numDeriv stringr]; }; + CIARA = derive2 { name="CIARA"; version="0.1.0"; sha256="0nr7wks9231326x0lhpbh824c6vcb5hr5jn89s9bmg9mci907bsf"; depends=[Biobase ggplot2 ggraph magrittr]; }; CICA = derive2 { name="CICA"; version="0.1.0"; sha256="0f765c1sqvcg11071008vn6gnk0v0lwmlhnqxgqy0r8cw05s2ggq"; depends=[ica NMFN]; }; CIDER = derive2 { name="CIDER"; version="0.99.0"; sha256="1qjr2xrcxhbkjjdv7714i6fyyn5rb5r9g79h5vnbd2bmswsgdyi3"; depends=[dbscan doParallel edgeR foreach ggplot2 igraph kernlab limma pheatmap Seurat viridis]; }; CIEE = derive2 { name="CIEE"; version="0.1.1"; sha256="03kq9cp0v41y0r2l9j5imcrsail2xsvlzhhhsrw454d4s9gqdql9"; depends=[survival]; }; @@ -692,7 +696,6 @@ in with self; { CLA = derive2 { name="CLA"; version="0.96-2"; sha256="0cfa7zm13bin8hx8ki20kaz8fvkwdaiyl0pjghhld8vr5d3289kq"; depends=[]; }; CLME = derive2 { name="CLME"; version="2.0-12"; sha256="161maq22r8wbd6c2dc8b47mh6991vc4iqmjr8g6yqb5gcwca8zhg"; depends=[isotone lme4 MASS nlme openxlsx prettyR shiny stringr]; }; CLONETv2 = derive2 { name="CLONETv2"; version="2.2.1"; sha256="1axkkagydpxdrz7ypw3x7bavaxk34lzj9bsdn1nah9nfr3cdia6h"; depends=[arules dbscan ggplot2 ggrepel sets]; }; - CLSOCP = derive2 { name="CLSOCP"; version="1.0"; sha256="0rkwq9rl2ph4h5zwb2i3yphjyzxmh6b6k23a8gcczycx6xdq4yhw"; depends=[Matrix]; }; CLUSTShiny = derive2 { name="CLUSTShiny"; version="0.1.0"; sha256="19mh5g1ylvlab4xjxw7girxk9zkpxxczhbfijf11b592hbw0qxqk"; depends=[cluster dplyr klaR MASS psycho rmarkdown shiny]; }; CLVTools = derive2 { name="CLVTools"; version="0.9.0"; sha256="11vifpsq3acdkrkjpssd29w69rwxccv7848rd71375dc26x22sw1"; depends=[data_table ggplot2 lubridate MASS Matrix optimx Rcpp RcppArmadillo RcppGSL]; }; CMAPSS = derive2 { name="CMAPSS"; version="0.1.1"; sha256="1rig2v1cl9ybnbikqfwbp4ji1jcxm6383xbdf8wz2f3lxk7iis8z"; depends=[Rdpack]; }; @@ -726,7 +729,7 @@ in with self; { COST = derive2 { name="COST"; version="0.1.0"; sha256="06xgnsccd621ihlrdmnnh14vh83q1r2bnp3iqi7vp5553b3y4l3w"; depends=[copula mvtnorm]; }; COUNT = derive2 { name="COUNT"; version="1.3.4"; sha256="02f7779fy0d2bql88x5v9csbxljhnyvl8wb8h83xrmwl7kaxsdpy"; depends=[MASS msme sandwich]; }; COUSCOus = derive2 { name="COUSCOus"; version="1.0.0"; sha256="1ykqi72v8v1b3g9qy6h34dvk5fynzf1rl2mby65p08axmaba5798"; depends=[bio3d matrixcalc]; }; - COVID19 = derive2 { name="COVID19"; version="3.0.1"; sha256="190l1g3hfwsbjhxbx58zlw5fyi7cqkh9avzkvss15iafr5crbvkj"; depends=[data_table R_utils]; }; + COVID19 = derive2 { name="COVID19"; version="3.0.2"; sha256="0ljhvip944gv44b5nswcp59n0qjsyniynq2wiwcb03lv6pvvmz1x"; depends=[data_table R_utils]; }; COVIDIBGE = derive2 { name="COVIDIBGE"; version="0.1.8"; sha256="014g50ixnm9rnw2pgsgw6qvfk7wn75hbss3n2ylr1i5ndnr72m49"; depends=[dplyr httr magrittr projmgr RCurl readr readxl survey tibble timeDate]; }; CP = derive2 { name="CP"; version="1.6"; sha256="18zblf13riiz3mq3hkvg6vhiwjzpsn6mvgc2p0bqyldy98v4aisd"; depends=[survival]; }; CPAT = derive2 { name="CPAT"; version="0.1.0"; sha256="0zygncwww3cazwmx06bhzq0g41xcqfpw307azdhygc8jmcy6qj71"; depends=[purrr Rcpp RcppArmadillo Rdpack]; }; @@ -765,13 +768,13 @@ in with self; { CTTShiny = derive2 { name="CTTShiny"; version="0.1"; sha256="1c9vsiqyig6kfjpy3dfrysc466h4v9530m49aynz65i1njplswyh"; depends=[CTT ltm psych shiny shinyAce]; }; CTTinShiny = derive2 { name="CTTinShiny"; version="0.1.0"; sha256="1dc6kaxajkvviszmrcvhh9cg2k8g1hbpf1f6fg3wlgnb80fsx9b7"; depends=[CTT foreign shiny]; }; CUB = derive2 { name="CUB"; version="1.1.4"; sha256="1l47fkfvd91mbfzgl0vwaahbyi53jv3md6zah9ns85ns6xlwap7n"; depends=[Formula]; }; - CUFF = derive2 { name="CUFF"; version="1.7"; sha256="1fvzr5fq4ciwqkfcasv9lad3g831l2nmx307ya91qamjblaaryqb"; depends=[DT lmerTest nlme xlsx xtable]; }; + CUFF = derive2 { name="CUFF"; version="1.8"; sha256="09rf08nm1zmwgw342kixph9hdxd5397rlx1bb29fj0zgfp071czc"; depends=[dplyr DT haven lmerTest nlme xlsx xtable]; }; CUMP = derive2 { name="CUMP"; version="2.0"; sha256="0rdscywmi4sylpjpr8r472iapddizb1mqyrd532cvw6frxins7w0"; depends=[]; }; CUSUMdesign = derive2 { name="CUSUMdesign"; version="1.1.5"; sha256="1qxq1a8b5pnmlq6rpjzvcp32scn2qknafch3h7qjsy8499zzbxx8"; depends=[]; }; CVD = derive2 { name="CVD"; version="1.0.2"; sha256="0agb0liwbp4wvmxbyxgfb7471ki1agfb6ssh77kvwbkxqmrc8d96"; depends=[]; }; CVEK = derive2 { name="CVEK"; version="0.1-2"; sha256="03z4s0szi8rl3izc651rvrhl2z247aaflyphzizplgmpw81xv1ry"; depends=[limSolve MASS]; }; CVR = derive2 { name="CVR"; version="0.1.1"; sha256="1y8m9r409jq5h6xx1rvz7c7aj882jldfxly89zf3cvp2qg3jh7rj"; depends=[PMA Rcpp RcppArmadillo]; }; - CVST = derive2 { name="CVST"; version="0.2-2"; sha256="05l3yzkfrbds09ah9cdwn2sn4ryhq78lz33ryzrgkv176jc8qjw5"; depends=[kernlab Matrix]; }; + CVST = derive2 { name="CVST"; version="0.2-3"; sha256="0bgk0d6w3dyhb5s30idnp6jpb3m8wf3b79wqlg127wwm0cird8pg"; depends=[kernlab Matrix]; }; CVThresh = derive2 { name="CVThresh"; version="1.1.1"; sha256="19d7pslzj8r3z5gn3cplpz2h2ayz6k1nrfx3s2b7a8w1il3vmi69"; depends=[EbayesThresh wavethresh]; }; CVTuningCov = derive2 { name="CVTuningCov"; version="1.0"; sha256="1bwzis82lqwcqp2djy4bnd3vvjr47krlv3pdc5msh12wcs0xhs7n"; depends=[]; }; CVXR = derive2 { name="CVXR"; version="1.0-10"; sha256="0cklfwsr3p4x4w7n6y3h3m4i3si8q0pwyp2vzv7kzawrmqc80484"; depends=[bit64 ECOSolveR gmp Matrix osqp R6 Rcpp RcppEigen Rmpfr scs]; }; @@ -799,6 +802,7 @@ in with self; { CatEncoders = derive2 { name="CatEncoders"; version="0.1.1"; sha256="1q9wzq06lac8z9y8b65alsxpb48bw8wqmifd893kknk51xq6r9kl"; depends=[data_table Matrix]; }; CatPredi = derive2 { name="CatPredi"; version="1.3"; sha256="0wj37pav20s273ha8pwmzypcdl8frakrxn5k149lg6vkgl6qmj8x"; depends=[mgcv rgenoud rms survival]; }; CatReg = derive2 { name="CatReg"; version="2.0.3"; sha256="02pxarc4v45w8ncx8hq084m69qgl9s2lkrv1biz60vrvl99dg016"; depends=[Rcpp Rdpack]; }; + CatastRo = derive2 { name="CatastRo"; version="0.2.1"; sha256="1ccigv8d3qrh2r99c2hkgbnx2xnagq692l0s3sw9gmqcb5zs6wd8"; depends=[dplyr httr lifecycle mapSpain rappdirs sf stringi terra tibble xml2]; }; CateSelection = derive2 { name="CateSelection"; version="1.0"; sha256="194lk6anrb05gaarwdg8lj5wm6k61b4r702cja3nf3z91i8paqi7"; depends=[]; }; CauchyCP = derive2 { name="CauchyCP"; version="0.1.0"; sha256="012aw8cgrwwcsbs93nfsdlv1j72mc96gaxvdrhs9njqd9anamsgl"; depends=[survival]; }; CausalGAM = derive2 { name="CausalGAM"; version="0.1-4"; sha256="1riz11hfg96iks7734rg692l75nfrd3hmr9gw563j27rkk1nfkl6"; depends=[gam]; }; @@ -817,6 +821,7 @@ in with self; { Census2016 = derive2 { name="Census2016"; version="0.2.0"; sha256="1c88jmd565v19w8dbvai10f9y5lyfmzsxsjblc3gdykf9kharvcq"; depends=[data_table]; }; CepLDA = derive2 { name="CepLDA"; version="1.0.0"; sha256="15vhk7l5mw2kicw2x60r4z71hc415g8kaf2p06jgf7ykxmzkj7kg"; depends=[astsa class MASS multitaper]; }; CerioliOutlierDetection = derive2 { name="CerioliOutlierDetection"; version="1.1.9"; sha256="0s3pd4y165v69m4wmg9jlc7dl4gz64la9yic67l3n4242wa84p19"; depends=[robustbase]; }; + Certara_R = derive2 { name="Certara.R"; version="1.0.0"; sha256="0na4411rxxqjyrxjmj27i9b5lrig2jysazk9fnpvrws8c63zl39y"; depends=[batchtools data_table dplyr DT ggplot2 htmltools jsonlite magrittr plotly remotes reshape rlang shiny shinyjqui shinyjs shinymaterial shinyWidgets sortable ssh xml2]; }; CfEstimateQuantiles = derive2 { name="CfEstimateQuantiles"; version="1.0"; sha256="1qf85pnl81r0ym1mmsrhbshwi4h1iv19a2wjnghbylpjaslgxp6i"; depends=[]; }; ChIPtest = derive2 { name="ChIPtest"; version="1.0"; sha256="1yn5b5s56k2dbhw6damxj18xbaiz180ym7fiq2i3p2gkcgwpddbz"; depends=[]; }; ChainLadder = derive2 { name="ChainLadder"; version="0.2.15"; sha256="1csi6hbbxnm4ilss2qganimh2sqgk2xb8dxa6fz0bdh0s5f6x79j"; depends=[actuar cplm ggplot2 lattice MASS Matrix statmod systemfit tweedie]; }; @@ -828,13 +833,12 @@ in with self; { ChaosGame = derive2 { name="ChaosGame"; version="1.1"; sha256="1gwrym3vjcqlj0ih479ipbajypajy9ga9sr3laj7g5zxx3cm4y4c"; depends=[colorRamps ggplot2 gridExtra plot3D RColorBrewer rgl sphereplot]; }; ChargeTransport = derive2 { name="ChargeTransport"; version="1.0.2"; sha256="0mq06ckp3yyj5g1z2sla79fiqdk2nlbclm618frhqcgmq93h0vha"; depends=[]; }; CheckDigit = derive2 { name="CheckDigit"; version="0.1-1"; sha256="0091q9f77a0n701n668zaghi6b2k3n2jlb1y91nghijkv32a7d0j"; depends=[]; }; - ChemoSpec = derive2 { name="ChemoSpec"; version="6.1.0"; sha256="01g0jlg77j5aw9jraghn5vpx7bb13wc2h6c8002xmd65j0vxsxig"; depends=[ChemoSpecUtils ggplot2 magrittr patchwork plotly plyr readJDX reshape2]; }; + ChemoSpec = derive2 { name="ChemoSpec"; version="6.1.2"; sha256="0g09zr1ysafzafs8gjzacrqpgd6vad39i1vsmr3smprp8f4739mq"; depends=[ChemoSpecUtils ggplot2 magrittr patchwork plotly plyr readJDX reshape2]; }; ChemoSpec2D = derive2 { name="ChemoSpec2D"; version="0.5.0"; sha256="05k46fn2i0ipn14zignxvykr8018wxql26x2r5b479hbkg1rk5s4"; depends=[ChemoSpecUtils colorspace ggplot2 readJDX]; }; ChemoSpecUtils = derive2 { name="ChemoSpecUtils"; version="1.0.0"; sha256="15w9v4g7myw0ygd9dvalz900yzgz5j2jnmw4j3zfp04fgm3wgbfq"; depends=[ggplot2 ggrepel magrittr plotly plyr]; }; ChillModels = derive2 { name="ChillModels"; version="1.0.2"; sha256="06hgg893anh5z8an4l1xl4liz7d0m79n21h116vkdlymayccydbr"; depends=[]; }; ChineseNames = derive2 { name="ChineseNames"; version="1.1.1"; sha256="1vkf4573iq7fqxwig7sphsbfpa9jbx36dayywdjx3n8nx8lksdqa"; depends=[bruceR data_table]; }; ChoR = derive2 { name="ChoR"; version="0.0-4"; sha256="08mildsx542zfm0kcdakcv7c71hb4jgbcq1lhidf0fz76zj1pzk1"; depends=[commonsMath rJava]; }; - ChoiceModelR = derive2 { name="ChoiceModelR"; version="1.2"; sha256="0dkp3354gvrn44010s8fjbmkpgn1hpl4xbfs5xslql8sk8rw0n2c"; depends=[]; }; CholWishart = derive2 { name="CholWishart"; version="1.1.2"; sha256="0lms6bnd0czb25ir4ls0lxv4d2ygqiq8ampnv9j7l6hj28xmqyjj"; depends=[]; }; CircMLE = derive2 { name="CircMLE"; version="0.3.0"; sha256="1nr6qicy5y247j970jw74pkbyhx4zjgajf2ygkxmdw6gfx5byn64"; depends=[circular energy]; }; CircNNTSR = derive2 { name="CircNNTSR"; version="2.2-1"; sha256="0mpm6vrkl3ap67khky8dndwvl9yzycm0rlv0vzznlygvlsg8sc38"; depends=[]; }; @@ -856,6 +860,7 @@ in with self; { CliftLRD = derive2 { name="CliftLRD"; version="0.1-1"; sha256="0qsdv568klxg6chgw329jbfjmf6w61hly2vxp90yzdfkca03z2s4"; depends=[CNLTreg liftLRD]; }; ClimClass = derive2 { name="ClimClass"; version="2.1.0"; sha256="1r836md31z2r5d9xckkbalzbhm4kf5paljv71kxpy53q92k7yi91"; depends=[geosphere ggplot2 reshape2]; }; ClimInd = derive2 { name="ClimInd"; version="0.1-3"; sha256="0n5kd001nkpks16c3msvn2qvzyrjawa2rqwh8zph2qr5hgpwcpg7"; depends=[chron SPEI weathermetrics]; }; + ClimMobTools = derive2 { name="ClimMobTools"; version="0.4.5"; sha256="1cnjhk1gw2qc0kl669g4nlnf7cfzld05qfwrxm3yml6rpv781lwx"; depends=[httr jsonlite Matrix RSpectra sf]; }; ClimProjDiags = derive2 { name="ClimProjDiags"; version="0.1.3"; sha256="1grhg0ajf5lfm7pi5mm0hgp0cmln1jwrgkrfb4ci85fpqn96ddji"; depends=[climdex_pcic multiApply PCICt plyr]; }; ClinSigMeasures = derive2 { name="ClinSigMeasures"; version="1.0"; sha256="0fw89a1q92ck32z6w4zn1ldvky6ag1gi7b9bbv10mhmqhq4w3k58"; depends=[]; }; ClinicalTrialSummary = derive2 { name="ClinicalTrialSummary"; version="1.1.1"; sha256="0b5by4sn9yvrvxr9921yqsgp8ma3g1hi2qbp5j9m836db1zjhyla"; depends=[Rcpp]; }; @@ -895,7 +900,7 @@ in with self; { CoTiMA = derive2 { name="CoTiMA"; version="0.5.4"; sha256="02bg0bckg5h8bk4plxjni5kya9rmqhz5d9dvfa19hmyd384hdxhv"; depends=[abind crayon ctsem doParallel foreach lavaan MASS MBESS OpenMx openxlsx psych rootSolve RPushbullet scholar stringi zcurve]; }; CodataGS = derive2 { name="CodataGS"; version="1.43"; sha256="1bjn6s1f5jn64gwrvjz5kvwfkbqrqhavib6dj9k37rb5nzqkwhp6"; depends=[Matrix]; }; CodeDepends = derive2 { name="CodeDepends"; version="0.6.5"; sha256="0l7kiv3awx50glf5cs841b4zzsff1ml90f0zr868ygvwsr4ps1hq"; depends=[codetools graph XML]; }; - CohortPlat = derive2 { name="CohortPlat"; version="1.0.3"; sha256="0na4idcckfqwwynx3kbfyqimzl46pna24aa9xlyjwbczf441gafm"; depends=[doParallel dplyr epitools forcats foreach ggplot2 openxlsx plotly purrr tidyr zoo]; }; + CohortPlat = derive2 { name="CohortPlat"; version="1.0.5"; sha256="01jvi7k3lvx684c4cwn3xrpwjsksk7gjvs3db64ji7chc4lkajv4"; depends=[doParallel dplyr epitools forcats foreach ggplot2 openxlsx plotly purrr tidyr zoo]; }; CoinMinD = derive2 { name="CoinMinD"; version="1.1"; sha256="0invnbj5589wbs0k2w5aq9qak7axc3s0g9nw85c48lnl0v95s91i"; depends=[MCMCpack]; }; Coinprofile = derive2 { name="Coinprofile"; version="0.1.9"; sha256="1bcip62gm34cx5m8a1mx9px2rhgvdmsgnn6q9q40k8p5hw4cx9g0"; depends=[coin exactRankTests ggplot2 plyr Rdpack zoo]; }; CollapseLevels = derive2 { name="CollapseLevels"; version="0.3.0"; sha256="1d2grxh95893j260igh4yh2z3rm3zymlpadqyp6w3na91birazb4"; depends=[dplyr ggplot2 lazyeval magrittr]; }; @@ -961,10 +966,10 @@ in with self; { CopernicusDEM = derive2 { name="CopernicusDEM"; version="1.0.2"; sha256="1jgvq1c86xgdyp17z1pmz01lfw5nsfc2x71pcn399vcgij5j1jrf"; depends=[doParallel foreach glue sf]; }; Copula_Markov = derive2 { name="Copula.Markov"; version="2.9"; sha256="18krq0q5i3j211g88sl153f1fa5crdcgclvl5lqawm7zykyzblh2"; depends=[]; }; Copula_Markov_survival = derive2 { name="Copula.Markov.survival"; version="1.0.0"; sha256="1sxg0ir39f4hj4m6imija0c88j513j6fflcp7xc0599iglwsrbvs"; depends=[survival]; }; - Copula_surv = derive2 { name="Copula.surv"; version="1.1"; sha256="1zs2jvb07948g2aspy8877j4hdzavd57lmv4x2yrf6gb4xzs3x3n"; depends=[]; }; + Copula_surv = derive2 { name="Copula.surv"; version="1.2"; sha256="1sashpxwbw0a5q8qvs8pwgxk0h5d3njw7j4gqrc8fh7bx71bqq7l"; depends=[]; }; CopulaCenR = derive2 { name="CopulaCenR"; version="1.1.3"; sha256="03hd6cw1mymkdcjf211g2c4m049d61hva8n4nxsrp2lpzxq3yz3s"; depends=[caret copula corpcor flexsurv icenReg magrittr plotly pracma survival]; }; CopulaDTA = derive2 { name="CopulaDTA"; version="1.0.0"; sha256="1bx0jvlbhaxf4yhrfpd5l5zp7kmp6f17ckb1y9974sgc7s3hpqcd"; depends=[ggplot2 plyr reshape2 rstan]; }; - CopulaREMADA = derive2 { name="CopulaREMADA"; version="1.3"; sha256="152g8nfa3ksj0dlzlch9a6g18b1vi6dlw748a6m55haghchbyr9l"; depends=[matlab mc2d statmod tensor]; }; + CopulaREMADA = derive2 { name="CopulaREMADA"; version="1.5"; sha256="0ryqh6aikakpkrkqxy853qlyxzwhmhwgiz7ba2w872wysdpp82k3"; depends=[matlab mc2d statmod tensor]; }; CopyDetect = derive2 { name="CopyDetect"; version="1.3"; sha256="1g3bwd805h62x93xvvn67acf9v6vn7s7ghxpvjhwcfdfj7fwzh6l"; depends=[mirt]; }; CorBin = derive2 { name="CorBin"; version="1.0.0"; sha256="0mjvhj9cw21xjg96fz5bcyfxgwdw367l1942a38by77ylypdfq3y"; depends=[]; }; CorDiff = derive2 { name="CorDiff"; version="1.0"; sha256="12rgfhygrdq1ign4ybr8g171wxic8zbp83n1xdsnqpj910k5jdr5"; depends=[mcc]; }; @@ -972,7 +977,7 @@ in with self; { CornerstoneR = derive2 { name="CornerstoneR"; version="2.0.2"; sha256="04dvryhcyi7f6bmm4067cn5vmy7kdqi3bys7ln8nnsc0kkdjxhi5"; depends=[checkmate data_table minpack_lm ranger SpatialTools vcd]; }; CorrBin = derive2 { name="CorrBin"; version="1.6"; sha256="0iwad5qf7hqii02s5f85155c5s7v8ghnac4l6l3c45dshrpapp2m"; depends=[boot combinat dirmult geepack mvtnorm]; }; CorrMixed = derive2 { name="CorrMixed"; version="1.0"; sha256="0rj987k8pzsw9n9a20ky23rwc3zyqsl0fcibpmry7p8pw2miaj0z"; depends=[nlme psych]; }; - CorrToolBox = derive2 { name="CorrToolBox"; version="1.6.3"; sha256="1mvw23f411vcmjq8lz4jx559ix8iz1c9zaynpkaviqz007amh6wa"; depends=[BinNonNor BinOrdNonNor GenOrd moments mvtnorm psych]; }; + CorrToolBox = derive2 { name="CorrToolBox"; version="1.6.4"; sha256="1bff6vfyrgrij78l7n6dpk5g434iyr1h3qxdj7r0gvfzhw188h7p"; depends=[BinNonNor BinOrdNonNor GenOrd moments mvtnorm psych]; }; CorrectOverloadedPeaks = derive2 { name="CorrectOverloadedPeaks"; version="1.2.17"; sha256="1g7irjbhwnbhk74y3qxcjlrsn2yz8q6wn7ih16wq669nswryxhxk"; depends=[bitops digest XML]; }; CorrectedFDR = derive2 { name="CorrectedFDR"; version="1.1"; sha256="1p0gp7m7v6nly0kr4pkjwxaa941z80nfc8ji5w0y73i79d024c2s"; depends=[]; }; CosW = derive2 { name="CosW"; version="0.1"; sha256="12l4w8b5jnr8773hxk7khrdn705x6bdbw7s8z8w95bfbbi12dj6v"; depends=[fdrtool pracma]; }; @@ -985,6 +990,7 @@ in with self; { CovSelHigh = derive2 { name="CovSelHigh"; version="1.1.1"; sha256="0dvvpkqml2k00gicpgp475z1rjspq3s37ys1mam29k54qlshhny6"; depends=[bartMachine bindata bnlearn doParallel doRNG foreach glmnet MASS Matching randomForest tmle xtable]; }; CovTools = derive2 { name="CovTools"; version="0.5.4"; sha256="1bkqg3kzy2ahjqldcf6x55wkrmb4s6y72y9cj0jwb1fph0a1p3sm"; depends=[doParallel expm foreach geigen Matrix mvtnorm pracma Rcpp RcppArmadillo Rdpack shapes SHT]; }; CovidMutations = derive2 { name="CovidMutations"; version="0.1.3"; sha256="03bl9frjfj8i7ydgi245113yzyg8rkgqxasicmqcjdd68zbz00kn"; depends=[cowplot dplyr ggplot2 ggpubr seqinr stringr VennDiagram]; }; + CoxBcv = derive2 { name="CoxBcv"; version="0.0.1.0"; sha256="14lrvkv983hq5fvy1p7n8y435w6yfp1iq7g50l8qy4ppaaixgwq0"; depends=[pracma survival]; }; CoxICPen = derive2 { name="CoxICPen"; version="1.1.0"; sha256="0m6g4gi33y5vmpf790x38y8g8vpxvr5935lcz9vjw5kkmsjkln0g"; depends=[foreach]; }; CoxPhLb = derive2 { name="CoxPhLb"; version="1.2.0"; sha256="0jlh2k5ygj896sfx7dcw5qlb80bl64rsvqfayv0c6a107bmrzsw4"; depends=[survival]; }; CoxPlus = derive2 { name="CoxPlus"; version="1.1.1"; sha256="038wsz206bgc0pnzx403b5ihcwhxpkrpxmwvrvqcxf8333pb62l5"; depends=[Rcpp RcppArmadillo]; }; @@ -992,7 +998,6 @@ in with self; { CpGFilter = derive2 { name="CpGFilter"; version="1.1"; sha256="0ccvk7lawmay0wqdyhs6ww7396dcfzazn72sq6zwyw7dl45k2j0i"; depends=[matrixStats]; }; CpGassoc = derive2 { name="CpGassoc"; version="2.60"; sha256="1zx18x8pxjl2ajnj7a7lb8383m75ysg17f4mzz0vkgl5mnf617ny"; depends=[nlme]; }; Cprob = derive2 { name="Cprob"; version="1.4.1"; sha256="1m4ys8xpj1jbn3lf8fym935y94dxipiimsf9zxwyw5sy71y7skgq"; depends=[geepack lattice lgtdl prodlim tpr]; }; - CreditMetrics = derive2 { name="CreditMetrics"; version="0.0-2"; sha256="16g3xw8r6axqwqv2f0bbqmwicgyx7nwzff59dz967iqna1wh3spi"; depends=[]; }; CreditRisk = derive2 { name="CreditRisk"; version="0.1.3"; sha256="09ks8xlsrbp3an1drcwmmd6df4fsfz61z21ma2p62a1pk0bnc86c"; depends=[fOptions]; }; Cronbach = derive2 { name="Cronbach"; version="0.1"; sha256="1gkapi7pgf1mwidhgdf3y5cm4bz5igzb7mdflz560aa67asp1qyf"; depends=[boot]; }; CropDetectR = derive2 { name="CropDetectR"; version="0.0.1"; sha256="14sabqld94if7f2m39bh6652cb62hcwx53k8q5k23anzzsn93qlj"; depends=[dplyr EBImage imager reshape2]; }; @@ -1008,7 +1013,7 @@ in with self; { CustosAscensor = derive2 { name="CustosAscensor"; version="0.1.0"; sha256="1axyhwf9rc9dvrrcrpmx69kp49nwb0an7csn9qbjmx9jwwav11l5"; depends=[]; }; CutpointsOEHR = derive2 { name="CutpointsOEHR"; version="0.1.2"; sha256="0r772zb7g10akcfnf2hnyvpvba4px9pgslyns7drmijdsh0ncnvj"; depends=[survival]; }; Cyclops = derive2 { name="Cyclops"; version="3.1.2"; sha256="13nwcksfxvjz2wh7dr500y0xy69hfl4k0ddsr6m24qh2km8spp6n"; depends=[Andromeda BH bit64 dplyr Matrix Rcpp RcppEigen rlang survival]; }; - CytOpT = derive2 { name="CytOpT"; version="0.9.2"; sha256="0cmdn0sjymz9cx3ja4yh4pa010h9sjsbib19nj9fn7dpkkblp40z"; depends=[ggplot2 MetBrewer patchwork reshape2 reticulate testthat]; }; + CytOpT = derive2 { name="CytOpT"; version="0.9.4"; sha256="008qm2kzclp0sy4ys7y0dsc894qrn7mazz9216w97rs2sn7kcrzx"; depends=[ggplot2 MetBrewer patchwork reshape2 reticulate testthat]; }; CytobankAPI = derive2 { name="CytobankAPI"; version="1.4.0"; sha256="19jlpx914sqiqfba9ypylnaiswvbn641wkgzaihbjj1h61jjzihk"; depends=[curl httr jsonlite]; }; CytobankBridgeR = derive2 { name="CytobankBridgeR"; version="1.0.0"; sha256="0m8gxbm3p9gvdszymqx10n5rzb406r4f70a0in798c56mp2rcsl4"; depends=[CytobankAPI]; }; D2MCS = derive2 { name="D2MCS"; version="1.0.0"; sha256="14c02p9shfhvpafvm10xpy2r5x1h2pqrbj07dnz7pviqndxjp7ma"; depends=[caret devtools dplyr FSelector ggplot2 ggrepel gridExtra infotheo mccr mltools ModelMetrics questionr R6 recipes tictoc varhandle]; }; @@ -1021,17 +1026,19 @@ in with self; { DAIME = derive2 { name="DAIME"; version="2.1.3"; sha256="099pbzgryz9lxhcqlrywcv8zl5af4ir5dyyqvgc16xi5bddxk7ld"; depends=[]; }; DAISIE = derive2 { name="DAISIE"; version="3.0.1"; sha256="10b55m4ycb07l0mfjx58zfmckk627arj575p9via6kr7lp1c3j59"; depends=[DDD deSolve doParallel foreach magrittr Matrix pracma subplex tensor testit]; }; DAKS = derive2 { name="DAKS"; version="2.1-3"; sha256="0vmpwxvksnmyq40faimbgpj0y3zbk519986n38ipwdfzllcg0zs4"; depends=[relations sets]; }; - DALEX = derive2 { name="DALEX"; version="2.3.0"; sha256="0x8rcl3p1h1dpzgsfnalfjhvv345gg5v0z8dxqwrk6i32xk5wmzb"; depends=[ggplot2 iBreakDown ingredients]; }; + DALEX = derive2 { name="DALEX"; version="2.4.0"; sha256="1s7r7k5ihdbj69r27vbcs3ghra9s4yqw7cyh2rkm2ry901zq3114"; depends=[ggplot2 iBreakDown ingredients]; }; DALEXtra = derive2 { name="DALEXtra"; version="2.1.1"; sha256="1xqqisrqal0spzkbc1x5rj3xpycfqj4g87wc3nl2j76frj8mnmdy"; depends=[DALEX ggplot2 reticulate]; }; DALY = derive2 { name="DALY"; version="1.5.0"; sha256="1v7ld01xcn5jiygl1c3xhd5h71ip90lks87fs9gmpnivp8jz5cr5"; depends=[]; }; DAMOCLES = derive2 { name="DAMOCLES"; version="2.3"; sha256="0pk9gq82qa18fl7zp74d47bgy8lhj9rkvfq23w8844nz9kn58s1f"; depends=[ape caper DDD deSolve expm Hmisc Matrix matrixStats picante]; }; DAMisc = derive2 { name="DAMisc"; version="1.7.2"; sha256="1mg40fqb0bj8jlw50dkkby67rj83g6pjhw9vbqvfxq30a1pq9inm"; depends=[AICcmodavg boot car clarkeTest coda dplyr DT effects ggplot2 haven janitor jtools lattice latticeExtra magrittr MASS nnet optiscale rlang srvyr survey tibble tidyr tidyselect xtable]; }; DAP = derive2 { name="DAP"; version="1.0"; sha256="0zzb05yxfaqp6qnr979q20rqy8sl5l825mxs0x9366qr7mz5k5ws"; depends=[MASS]; }; + DArand = derive2 { name="DArand"; version="0.0.1.2"; sha256="1pwd5srrjy8mhs40k6g6x5j3vk9cr5hylk8sdyiiqalpq490nzqy"; depends=[]; }; DBEST = derive2 { name="DBEST"; version="1.8"; sha256="1a598g02hpfgv572gchllqkppynnsp4lx764jg0g66w3b66k0kdy"; depends=[zoo]; }; DBGSA = derive2 { name="DBGSA"; version="1.2"; sha256="04zqh9y3nqcdzs5jn8aaq5idy9zl450ikvl788xs860wlg692qv2"; depends=[fdrtool]; }; DBI = derive2 { name="DBI"; version="1.1.2"; sha256="0n2gf5flmcrkad7p0pzsnsgwjl5006yi7lyz9lisqxhw8xykgv2n"; depends=[]; }; DBItest = derive2 { name="DBItest"; version="1.7.2"; sha256="0zx58nq6l21g0sbrmrnmckw0x20i2f6lv81cczh02yrv4r968cmh"; depends=[blob callr DBI desc hms lubridate palmerpenguins R6 rlang testthat vctrs withr]; }; DBfit = derive2 { name="DBfit"; version="2.0"; sha256="1b5fy4xya5k31937ccjsq1gj9y39lh1vb48jfc0sr56isrx0c496"; depends=[Rfit]; }; + DBpower = derive2 { name="DBpower"; version="0.1.0"; sha256="04wwhzlc9g6il478ax5yvh74bbb6hs29jyslkiz3k1hi25hlpkrn"; depends=[combinat dplyr GBJ kit magrittr mvtnorm]; }; DCA = derive2 { name="DCA"; version="2.0"; sha256="1acy33vyf814kr0aj6kdvi9f1qzgynwwzv57ll01gd0iqq36374f"; depends=[coin elasticnet GPArotation locfdr modeest mvtnorm PMA]; }; DCCA = derive2 { name="DCCA"; version="0.1.1"; sha256="06xdx79r7dr14dlk5vgcyd8ar4sc72imlyk66bnia1kvlynvdy69"; depends=[checkmate]; }; DCD = derive2 { name="DCD"; version="0.1.0"; sha256="0p6vk8fdvpcvb1bb5fwy3h1v8y3djlvcm5jl5lnx30ngqj6d7rcj"; depends=[data_table doParallel foreach ggplot2 igraph lattice lsa Matrix plyr qlcMatrix Rdpack ROCR WGCNA]; }; @@ -1090,12 +1097,14 @@ in with self; { DIMORA = derive2 { name="DIMORA"; version="0.2.0"; sha256="1ig2h2v199r5ryia35fx2540px7n2qshpma73599l82dr7k9hb33"; depends=[deSolve forecast minpack_lm numDeriv reshape2]; }; DIRECT = derive2 { name="DIRECT"; version="1.0.1"; sha256="00z4xlc9kxn19lw2b8xq6krsf5v3wfbr1ghl5ah5shr9dnv84lc1"; depends=[]; }; DISTRIB = derive2 { name="DISTRIB"; version="1.0"; sha256="0whwmmdx2k2vrjjkz4ww9v7z9ad3835819pby91119lyic27w727"; depends=[]; }; - DIZutils = derive2 { name="DIZutils"; version="0.0.12"; sha256="06c1iz2ji4jn32kwkfiagq7y2zhy97cm5a0mjb8a6fki8658ly31"; depends=[config data_table DBI Hmisc magrittr parsedate psych rapportools RJDBC RJSONIO RPostgres shiny shinyjs xml2]; }; + DIZtools = derive2 { name="DIZtools"; version="0.0.4"; sha256="17fgkcj27cx19q4w5c6r6gr3cqlgvdbnsk640zzhwgk67cavq3v4"; depends=[cleaR config logger magrittr parsedate]; }; + DIZutils = derive2 { name="DIZutils"; version="0.0.15"; sha256="1hnpzv0mqqwh5sdyw8pvalr7bm2girmgd7gh4f2l704ihffp3r36"; depends=[data_table DBI DIZtools Hmisc psych RJDBC RJSONIO RPostgres xml2]; }; DIconvex = derive2 { name="DIconvex"; version="1.0.0"; sha256="0bnrq9nmryshir6ll43nz20aaqmmw0zjvfml72cpwbvrma8a3qmz"; depends=[lpSolveAPI]; }; DImodels = derive2 { name="DImodels"; version="1.1"; sha256="0767xanj4dck6hxx392fcavwsjz8d30wymxnabr5v8s7pcsmv18p"; depends=[hnp rootSolve]; }; DIscBIO = derive2 { name="DIscBIO"; version="1.2.0"; sha256="1m1c9ivblk3sir6lfq0msx2vlrx37dd5v7y6003k6fmsgrfpi9fs"; depends=[AnnotationDbi boot cluster fpc ggplot2 httr igraph impute mclust NetIndices org_Hs_eg_db philentropy png RColorBrewer rpart rpart_plot RWeka SingleCellExperiment statmod TSCAN tsne]; }; DJL = derive2 { name="DJL"; version="3.7"; sha256="0j8535gdn5h1rjc357w30sdmarmm9sx9n62fiji191wpk1mm1dmh"; depends=[car lpSolveAPI]; }; DLASSO = derive2 { name="DLASSO"; version="2.0.2"; sha256="0xdygf6h89d9z4kqb46iqfxgdzq9dmkrxf9ypw78l4d8n9xx2gaa"; depends=[MASS]; }; + DLL = derive2 { name="DLL"; version="1.0.0"; sha256="00xj6r1i4qhv0lq9ky88pw26nkc3ywhl23j9rsh2z5jn4dqpwpcg"; depends=[glmnet locpol MASS SAM]; }; DLMtool = derive2 { name="DLMtool"; version="6.0.3"; sha256="00gh4di7ngn56v5hy7l5ybj6zg71fxaqyp1chmz22arb7rvj4q08"; depends=[dplyr ggplot2 MSEtool Rcpp]; }; DMCfun = derive2 { name="DMCfun"; version="2.0.2"; sha256="1phzi3an03akf04q1j6s1dmqmfzg1r52ga7685wimcbxy4cbq323"; depends=[BH DEoptim dplyr pbapply Rcpp shiny tidyr]; }; DMLLZU = derive2 { name="DMLLZU"; version="0.1.1"; sha256="0ck87abcd5gkq69q1g5g0yshfhx94m3vgayvxgzgnkidn9mivx22"; depends=[caret gbm ISLR lmtest nnet randomForest rlang sandwich]; }; @@ -1107,6 +1116,7 @@ in with self; { DMwR2 = derive2 { name="DMwR2"; version="0.0.2"; sha256="1vzfbz2k05j8r2hpig3d2grb99rnnh2s1sviii3prcyqicxfh0i9"; depends=[class DBI dplyr quantmod readr rpart xts zoo]; }; DNAseqtest = derive2 { name="DNAseqtest"; version="1.0"; sha256="1mpmf40vrpw8m75rlqchsnyrz12pgg5bkz7wfca5yy5sbbiwk5pf"; depends=[]; }; DNAtools = derive2 { name="DNAtools"; version="0.2-3"; sha256="10j95g9jqr7jk9ph9j3i2yblkmp4v4py8vq70rv7q56cv7dq7z32"; depends=[multicool Rcpp RcppParallel RcppProgress Rsolnp]; }; + DNH4 = derive2 { name="DNH4"; version="0.1.12"; sha256="0g3ibacsbsk34b6411j3n3q9dxqq1iqdnisppmmq7s2bp94ab771"; depends=[httr rvest tibble tidyr]; }; DNLC = derive2 { name="DNLC"; version="1.0.0"; sha256="05410xgpfjsydjmnzry454qcjpws9vhh252q2xq7l0scdj87ly00"; depends=[caTools fdrtool GOstats igraph locfdr mvtnorm spdep]; }; DNMF = derive2 { name="DNMF"; version="1.3"; sha256="09yp6x6vd44ahklcag96fpjgyphyn45rkqkbwr1n36a2d8vxk9nc"; depends=[doParallel foreach gplots Matrix]; }; DOBAD = derive2 { name="DOBAD"; version="1.0.6"; sha256="0ifrrfm4yp1416z58qgnak042rgj1xvqby2vvzgrv19z6b3250p3"; depends=[lattice Matrix numDeriv]; }; @@ -1123,8 +1133,9 @@ in with self; { DPQmpfr = derive2 { name="DPQmpfr"; version="0.3-1"; sha256="0f3l6dhiqnlix5vdz65pnxic43hcd4xiz64sh3cp8xs8cbmlnqcw"; depends=[DPQ gmp Rmpfr]; }; DPWeibull = derive2 { name="DPWeibull"; version="1.8"; sha256="05sasi42cakq0k3syvn2hnvb0sl2dflw6x98riwgrjvsmnw6bh2g"; depends=[binaryLogic prodlim Rcpp RcppArmadillo survival truncdist]; }; DPtree = derive2 { name="DPtree"; version="1.0.1"; sha256="0d7zf695lwkx4gv50f08cbi3p3mjjay0qgrbmvybf9m15i4zmyd7"; depends=[MASS MCMCpack plyr Rdpack]; }; - DQAstats = derive2 { name="DQAstats"; version="0.2.3"; sha256="0fxa9xpjjgab3wsaqnkh1v31gsb8zzsg3g18376w3cy4j8np6x2z"; depends=[data_table DIZutils future future_apply jsonlite kableExtra knitr magrittr parsedate rmarkdown tinytex]; }; - DR_SC = derive2 { name="DR.SC"; version="2.5"; sha256="0s19vrzf8xyfqdssg5makj45fm08p2shgplqfdvgmzvb7hwfalr7"; depends=[CompQuadForm cowplot ggplot2 GiRaF MASS Matrix mclust purrr RColorBrewer Rcpp RcppArmadillo S4Vectors Seurat spatstat_geom]; }; + DQAgui = derive2 { name="DQAgui"; version="0.1.9"; sha256="1cq002anhdk6hqnlskngyr14jbaaxvwzql4ry30g4j0d6x6dy5s6"; depends=[data_table daterangepicker DIZtools DIZutils DQAstats DT jsonlite knitr lubridate magrittr parsedate shiny shinyalert shinydashboard shinyFiles shinyjs shinyWidgets waiter]; }; + DQAstats = derive2 { name="DQAstats"; version="0.2.6"; sha256="1z3mmrd5vdd9z973y8d77r610b1ns8viwmncckcl813rd2fz2dki"; depends=[data_table DIZtools DIZutils future future_apply jsonlite kableExtra knitr magrittr parsedate rmarkdown tinytex]; }; + DR_SC = derive2 { name="DR.SC"; version="2.7"; sha256="1ap30phavskiy9vn7jzh8iajfr1ds3gwpcdh59vawf8xv1w8lwpi"; depends=[CompQuadForm cowplot ggplot2 GiRaF MASS Matrix mclust purrr RColorBrewer Rcpp RcppArmadillo S4Vectors Seurat spatstat_geom]; }; DRAYL = derive2 { name="DRAYL"; version="1.0"; sha256="0cf5pyx6nwh8srdylpnmymv3dr67fm6qqpwd1hvj1wmyfc8fznpp"; depends=[cubature pracma RConics rmutil]; }; DRDID = derive2 { name="DRDID"; version="1.0.3"; sha256="1xlz4vc43myxximzcf87bk52pd5rplcbi5655m18xk7jx2l95ksb"; depends=[BMisc trust]; }; DRDRtest = derive2 { name="DRDRtest"; version="0.1"; sha256="1vrvwr441w526a80s0r2fwqlllvn05ir8v2152jz2wxrwhnpq1s0"; depends=[KernSmooth SuperLearner]; }; @@ -1134,7 +1145,7 @@ in with self; { DRR = derive2 { name="DRR"; version="0.0.4"; sha256="1y70si1gig4l7jx5jiqsqliyywfsvimkx53x3zh1lc3yj2j6bqwk"; depends=[CVST kernlab Matrix]; }; DRaWR = derive2 { name="DRaWR"; version="1.0.1"; sha256="1pfdczwzd236c64yw94bgbk0hbl4dhlgjfjwkljmqgqrzsddvgqh"; depends=[Matrix ROCR]; }; DRomics = derive2 { name="DRomics"; version="2.4-0"; sha256="1ld83nwslbxcd63s1xhkc4380q87wnmgzx3kx5nv978zh9dqc92x"; depends=[DESeq2 ggplot2 limma SummarizedExperiment]; }; - DRviaSPCN = derive2 { name="DRviaSPCN"; version="0.1.0"; sha256="1h8wy577q5fy1pjnyr7cfk33yg0cvw59ppky8gml2ir6hggyd88p"; depends=[ChemmineR clusterProfiler GSVA igraph pheatmap rvest xml2]; }; + DRviaSPCN = derive2 { name="DRviaSPCN"; version="0.1.2"; sha256="1j6iss2aavrckkr3m50kcw7yrc1wqbpgmd60rw9bgk8vycd1m2iw"; depends=[ChemmineR clusterProfiler GSVA igraph pheatmap rvest xml2]; }; DSAIDE = derive2 { name="DSAIDE"; version="0.9.3"; sha256="11sz57a0mmhk3lj621wnccmcbbrxp0ipg99phfk3wb927985p0zv"; depends=[adaptivetau deSolve dplyr ggplot2 gridExtra lhs nloptr plotly rlang shiny XML]; }; DSAIRM = derive2 { name="DSAIRM"; version="0.9.3"; sha256="1igwm6zm987xjyfvwakxa5ckb1chiaykcjcambkxpjyi1b6gg6gf"; depends=[adaptivetau boot deSolve dplyr ggplot2 gridExtra lhs nloptr plotly rlang shiny XML]; }; DSBayes = derive2 { name="DSBayes"; version="1.1"; sha256="0iv4l11dww45qg8x6xcf82f9rcz8bcb9w1mj7c7ha9glv5sfb25v"; depends=[BB]; }; @@ -1148,9 +1159,8 @@ in with self; { DSjobtracker = derive2 { name="DSjobtracker"; version="0.1.1"; sha256="1vi07n7ygsdjj4830rnx7kvacmnizl146c6bfw2fnby47apg38f9"; depends=[]; }; DSpoty = derive2 { name="DSpoty"; version="0.1.0"; sha256="18z8gk3zj7k2szxg9579qy5klrqjw6zsk5x9jmwrv4qhb98fyji6"; depends=[dplyr httr purrr stringr]; }; DSsim = derive2 { name="DSsim"; version="1.1.5"; sha256="0dr8dc91m7s5c198k9cb26a09f14wb8ihr46c0mr9cg33l2wf3nv"; depends=[fields mgcv mrds rgeos shapefiles sp splancs]; }; - DStree = derive2 { name="DStree"; version="1.0"; sha256="14wba25ylmsyrndh007kl377dv4r34wr1555yxl6kyxrs4yg3jir"; depends=[Ecdat pec Rcpp rpart rpart_plot survival]; }; DSviaDRM = derive2 { name="DSviaDRM"; version="1.0"; sha256="1hj2pgnldrpgapwwz1kf4k6mvyzwdvb1i6czd7sbimsx5hafwps8"; depends=[igraph ppcor]; }; - DT = derive2 { name="DT"; version="0.20"; sha256="17xs18i439p15agyk7z2xyyrwgrpn5pw09kd3jwxn7qhxi4pyvf6"; depends=[crosstalk htmltools htmlwidgets jquerylib jsonlite magrittr promises]; }; + DT = derive2 { name="DT"; version="0.21"; sha256="1yhlph9h8z78wqjddv598l2xrqpp605d70cxfb69m53hanw4hmzn"; depends=[crosstalk htmltools htmlwidgets jquerylib jsonlite magrittr promises]; }; DTAT = derive2 { name="DTAT"; version="0.3-4"; sha256="1ddmih8cxbgc1p4m0sm8gdbnf0d3ka8z7014zd4aykz75j3pr002"; depends=[data_table dplyr Hmisc jsonlite km_ci pomp r2d3 shiny survival]; }; DTAXG = derive2 { name="DTAXG"; version="0.1.0"; sha256="1jxa0ix0z35i0xdnjl698j8iqjmp6nz8ckah9bap5ay9rkq0xd7f"; depends=[]; }; DTAplots = derive2 { name="DTAplots"; version="1.0.2.5"; sha256="1jwfh8j8ahaj2z19g2f70r652j77q4f0b7j91mggsb0dgk449342"; depends=[]; }; @@ -1183,7 +1193,7 @@ in with self; { Data2LD = derive2 { name="Data2LD"; version="3.2.1"; sha256="1y6nyysm96q5mlrcl0vkjhq5lr624n2266xpmyl4ck0h1dhjb6bz"; depends=[deSolve fda knitr rmarkdown]; }; DataClean = derive2 { name="DataClean"; version="1.0"; sha256="0wkafjyp6c2mx7g1bpz2pbxyl5nm2wba2hly8miizv0fdc762za5"; depends=[xlsx XML]; }; DataCombine = derive2 { name="DataCombine"; version="0.2.21"; sha256="0iwb4726bk0cjhay694dp43b1553yyk9lpxbncs85kz229b26arm"; depends=[data_table dplyr]; }; - DataEditR = derive2 { name="DataEditR"; version="0.1.4"; sha256="0skra1453ndzjbsfqb17yzb1h25hl3g3jpqc67kh0m3ijc7ch0ps"; depends=[htmltools miniUI rhandsontable rstudioapi shiny shinyBS shinyjs shinythemes]; }; + DataEditR = derive2 { name="DataEditR"; version="0.1.5"; sha256="0kwjgr6kaai42mhcljjs6i93m966x45gic5jgqsrkgfwjmmgf043"; depends=[bslib htmltools miniUI rhandsontable rstudioapi shiny shinyBS shinyjs]; }; DataExplorer = derive2 { name="DataExplorer"; version="0.8.2"; sha256="0451fnlaqvyzpqhn25g6lj2svjfsfaxii9vmwhqw7p29fl71zaln"; depends=[data_table ggplot2 gridExtra networkD3 reshape2 rmarkdown scales]; }; DataFakeR = derive2 { name="DataFakeR"; version="0.1.2"; sha256="0158ffj6yfvdirxar39rl6n730sza0lzq48v65p43whz6jbf9ybb"; depends=[dplyr glue magrittr purrr R6 tibble tidygraph yaml]; }; DataGraph = derive2 { name="DataGraph"; version="1.2.5"; sha256="0f5wh2lyddr48wdcqgk1y1jbs9q9rim86v4g1c7m4xgnvyp81mih"; depends=[Rcpp]; }; @@ -1192,11 +1202,11 @@ in with self; { DataSpaceR = derive2 { name="DataSpaceR"; version="0.7.5"; sha256="0n7f7092lmhac1xb7yw4a68nmnk0cad2j6lkaj2v0d1nl2q7pvam"; depends=[assertthat curl data_table digest httr jsonlite R6 Rlabkey]; }; DataVisualizations = derive2 { name="DataVisualizations"; version="1.2.2"; sha256="1fqsim2kz57f4c9isj6pivxnsabhdpj17dpyly4d4jh5bgyscqzm"; depends=[ggplot2 pracma Rcpp RcppArmadillo reshape2 sp]; }; DataViz = derive2 { name="DataViz"; version="0.2.8"; sha256="1dr5nvdzc63x9ymlysvv5i8b7zcffq13pa39q0ychdwr1s3x7vzw"; depends=[Rcpp tibble]; }; - DatabaseConnector = derive2 { name="DatabaseConnector"; version="5.0.0"; sha256="1gv5awdd6xm72j7w787aiq8y8zbf56xswkpr67zjynhkh8q6jrf1"; depends=[bit64 DBI readr rJava rlang SqlRender stringr urltools]; }; + DatabaseConnector = derive2 { name="DatabaseConnector"; version="5.0.2"; sha256="03gh1x560c2zflcha7k04y3zcav03jb8wqpnk50389mwmggl9k4q"; depends=[bit64 DBI readr rJava rlang SqlRender stringr urltools]; }; DatabaseConnectorJars = derive2 { name="DatabaseConnectorJars"; version="1.1.0"; sha256="18m6ynj30r5xdy51b3s39h0jcz1k2wgka888skr6ds2233lhqk2w"; depends=[rJava]; }; DatabionicSwarm = derive2 { name="DatabionicSwarm"; version="1.1.5"; sha256="1m5ydlyj54ybw38b6i78krrvqj29bp24x19xbqz9fgwpqimnv79y"; depends=[deldir GeneralizedUmatrix Rcpp RcppArmadillo]; }; DatastreamDSWS2R = derive2 { name="DatastreamDSWS2R"; version="1.8.2"; sha256="018733gm5z90qhbci6khxx27pn074si176mwnlq53bd6r722jiwm"; depends=[dplyr foreach httr jsonlite stringi stringr xts zoo]; }; - Davies = derive2 { name="Davies"; version="1.1-9"; sha256="19n2szki2dc8z01zh5a7bq4scgisnpd2qqbiimgrswjrykgh2fpm"; depends=[]; }; + Davies = derive2 { name="Davies"; version="1.2-0"; sha256="0n2pqipv0b1w2zjvycms0kyk7h8ps49f5jlzgyxhy9dlyr0ivaml"; depends=[mathjaxr]; }; DeCAFS = derive2 { name="DeCAFS"; version="3.3.1"; sha256="1508pl1jwp9ypfg31ygyrx1abckivv3xb69qd7hq6w1xvlkc83qr"; depends=[ggplot2 Rcpp robustbase]; }; DeLorean = derive2 { name="DeLorean"; version="1.5.0"; sha256="1ry6j4mvxms9hddi9c56p9yhjh66fzss41wqkf6xq398h1wbn4q1"; depends=[BH broom coda dplyr fastICA functional ggplot2 kernlab lattice MASS memoise Rcpp RcppEigen reshape2 rstan rstantools seriation StanHeaders stringr]; }; DeRezende_Ferreira = derive2 { name="DeRezende.Ferreira"; version="0.1.0"; sha256="05c99z3hlwwm0p02cl9z6gjwfxfq2b2qn90l85270bi16llgf42h"; depends=[xts]; }; @@ -1206,7 +1216,6 @@ in with self; { Deducer = derive2 { name="Deducer"; version="0.7-9"; sha256="14kakyf28i654pndlswjzp6h3h7szpznrg6xznqg150mmn0bs3s6"; depends=[car e1071 effects foreign ggplot2 JGR MASS multcomp plyr rJava scales]; }; DeducerPlugInExample = derive2 { name="DeducerPlugInExample"; version="0.2-0"; sha256="03aw7wr957xzw920ybyzxnck5kx0q2xpcrpq8jh2afyzszy6hzbi"; depends=[Deducer]; }; DeducerPlugInScaling = derive2 { name="DeducerPlugInScaling"; version="0.1-0"; sha256="1qg11vi4szznchh54p9345jbmrfzfr9z5l3x5xz4m86myjkys1mb"; depends=[Deducer GPArotation irr klaR mvnormtest psych]; }; - DeducerSpatial = derive2 { name="DeducerSpatial"; version="0.7"; sha256="0133qk3yjcifyha7c4pqr5s0hmbci72bzgil2r0sxjmrljs3q727"; depends=[Deducer Hmisc JavaGD maptools OpenStreetMap rgdal scales sp UScensus2010]; }; DeducerSurvival = derive2 { name="DeducerSurvival"; version="0.1-0"; sha256="03qk3y4pibvrxbnxbm5rlksw807dvbilip1jbpn1r7k02ibzq676"; depends=[Deducer]; }; DeducerText = derive2 { name="DeducerText"; version="0.1-2"; sha256="0if2p9j74wa5rva4iv0i8iax22grl9j7lqcqzqlywjgqwnlzxa05"; depends=[Deducer RColorBrewer SnowballC tm wordcloud]; }; DeductiveR = derive2 { name="DeductiveR"; version="1.0.0"; sha256="0bx1ad2gw0pf03z0im31mzaa26jxwws6fkbcj319kd8b4s4wp92y"; depends=[dplyr ggplot2 moments reshape2]; }; @@ -1241,9 +1250,8 @@ in with self; { DiNAMIC_Duo = derive2 { name="DiNAMIC.Duo"; version="1.0.0"; sha256="0yln7cvw3rribcqzdp20widdvlzgl64js7zvib0jn3ynxdl06n2y"; depends=[biomaRt dinamic plyr reticulate]; }; DiPALM = derive2 { name="DiPALM"; version="1.1"; sha256="0wni4xz8a9mf9pih332k1fmc62bha9rs63x56dn6w85hsd8wqz7n"; depends=[ggplot2 limma WGCNA]; }; DiPhiSeq = derive2 { name="DiPhiSeq"; version="0.2.0"; sha256="11l2inf99vxz9k292307j8c2b25kc1066svy3vxrfl72rrm4fqa7"; depends=[]; }; - DiPs = derive2 { name="DiPs"; version="0.6.2"; sha256="13n50wakvh7ny342xl007k1dfbwmgzg8kxvgcpfblaypqn48q09f"; depends=[liqueueR mvnfast plyr]; }; DiSSMod = derive2 { name="DiSSMod"; version="1.0.0"; sha256="199yipbc2sx2lsl51rpfyh80bfxaahfd2llqmfsp946gvj7339hv"; depends=[MASS matrixcalc psych sfsmisc]; }; - DiagrammeR = derive2 { name="DiagrammeR"; version="1.0.8"; sha256="0cyj9mc7rf4kylr9h2k6grfimc6mjyjk14qv1bza9pay44k7n5dr"; depends=[downloader dplyr glue htmltools htmlwidgets igraph influenceR magrittr purrr RColorBrewer readr rlang rstudioapi scales stringr tibble tidyr viridis visNetwork]; }; + DiagrammeR = derive2 { name="DiagrammeR"; version="1.0.9"; sha256="1gqaqk7jdh37zzadv0aymr9yb8lpqgj3l8n1n3cds38i4zz2d934"; depends=[downloader dplyr glue htmltools htmlwidgets igraph influenceR magrittr purrr RColorBrewer readr rlang rstudioapi scales stringr tibble tidyr viridis visNetwork]; }; DiagrammeRsvg = derive2 { name="DiagrammeRsvg"; version="0.1"; sha256="0j2cm1mx3zrb2k3pcrb96z2z3kws61gyyjsjjv5rqcb5lzdgi65k"; depends=[V8]; }; DiallelAnalysisR = derive2 { name="DiallelAnalysisR"; version="0.4.0"; sha256="087kzxdvhabl1f9q5mbr4dllrpsx86a08bs34xsam2g2x63vmdxq"; depends=[ggplot2]; }; DiceDesign = derive2 { name="DiceDesign"; version="1.9"; sha256="1a8ixa65xgyfri03cviic8qi2plbhdyz8m02bwif8w94w0q3ghlk"; depends=[]; }; @@ -1265,10 +1273,10 @@ in with self; { DirectEffects = derive2 { name="DirectEffects"; version="0.2.1"; sha256="0cjqp4gam1psd11d6h99pi3ramnaybp6bij86wbgqji2icqlvghg"; depends=[Formula glue sandwich]; }; DirectStandardisation = derive2 { name="DirectStandardisation"; version="1.3"; sha256="1qlfvzlig3a2v78fiq6sbbpxklmjczikxdw57m6mqngzrl9vdl2g"; depends=[]; }; DirectedClustering = derive2 { name="DirectedClustering"; version="0.1.1"; sha256="1shdqz0c5bbgknvfqr3ais26cb5mpywnah3d3584w97sy8v7gxm2"; depends=[igraph]; }; - Directional = derive2 { name="Directional"; version="5.2"; sha256="19vz0i3q4560fknvr9d7b5plq3xvydrw2kk91qngrx5dsml0mx0k"; depends=[bigstatsr doParallel foreach ggplot2 magrittr RANN Rfast Rfast2 rgl rnaturalearth sf]; }; + Directional = derive2 { name="Directional"; version="5.3"; sha256="0a6yp939dlfm23glwvb4hcpd8g9lajw9jbj9k4kwism23jbx9kcg"; depends=[bigstatsr doParallel foreach ggplot2 magrittr RANN Rfast Rfast2 rgl rnaturalearth sf]; }; DirichletReg = derive2 { name="DirichletReg"; version="0.7-1"; sha256="1ql5mwb7zb06y9j6inrlngq7c15as4j17wd8kc71fxs0a2jdj7xi"; depends=[Formula maxLik]; }; DisHet = derive2 { name="DisHet"; version="1.0.0"; sha256="056jcs1qpiyadnmlzd0cj4kp0qzkichxi0pdnxypyq1fsqnpvan3"; depends=[gtools matrixStats]; }; - DisImpact = derive2 { name="DisImpact"; version="0.0.15"; sha256="1cksc68gqvlah6rzlh1h7glsl55v9kxkayvv05hz6fkcds01qkga"; depends=[dplyr purrr rlang tidyr tidyselect]; }; + DisImpact = derive2 { name="DisImpact"; version="0.0.16"; sha256="0zybgv09d1l2wbqz773sya9kldmz9dy4m8ll2df9f11hwlpaf4dz"; depends=[dplyr purrr rlang tidyr tidyselect]; }; DisaggregateTS = derive2 { name="DisaggregateTS"; version="1.0"; sha256="1r55ipjssyxp8frw02587mmpmsgi169hbsj6c5bccd9agcys9h5s"; depends=[lars Matrix Rdpack withr zoo]; }; DiscreteFDR = derive2 { name="DiscreteFDR"; version="1.3.6"; sha256="06z9phxg3wjxvndcl3fnh99wbs2j8j2m7wndm0hskhcgijab5cgg"; depends=[Rcpp]; }; DiscreteInverseWeibull = derive2 { name="DiscreteInverseWeibull"; version="1.0.2"; sha256="0vjsvl4m4zccfgizv7mzidbbpzqcm101x448vllcdcrn2xlnkmnq"; depends=[Rsolnp]; }; @@ -1278,6 +1286,7 @@ in with self; { DiscriMiner = derive2 { name="DiscriMiner"; version="0.1-29"; sha256="1ii8aa4dwfk991qdnpmkva20wvs5fqcna9030c799ybf11qpdass"; depends=[]; }; Disequilibrium = derive2 { name="Disequilibrium"; version="1.1"; sha256="1jm5n01ih4rnga13058yh939zp2lvjn5pgb6rrwp5fdlk5kqsgb0"; depends=[Formula numDeriv optimr]; }; DisimForMixed = derive2 { name="DisimForMixed"; version="0.2"; sha256="00mknsalikangr17946877m5fy2jgkgasgl6ng4f2nr44f0q9l6q"; depends=[cluster dplyr]; }; + DistPlotter = derive2 { name="DistPlotter"; version="0.0.1"; sha256="02260wl216zq69l3acllcx026y3zy2cxyhxgfp7in7wdd4c3jxj2"; depends=[colourpicker dplyr DT extraDistr ggplot2 rio scales shiny shinyalert shinyBS shinyjs shinyWidgets stringi stringr]; }; Distance = derive2 { name="Distance"; version="1.0.4"; sha256="14sdkggacwv3dl8wd2vspy9vn1psz8yw2nvs12c2vjkgxa75dgcl"; depends=[dplyr mrds rlang]; }; DistatisR = derive2 { name="DistatisR"; version="1.0.1"; sha256="0myzfki8yrk0nhgdgsqs4wjbqhzmkdil1g005hc7p4lz3gi09bfx"; depends=[car prettyGraphs]; }; DistributionFitR = derive2 { name="DistributionFitR"; version="0.1"; sha256="0wg43gqsdy1ja0l489k27k9q1w2zq45wzmqnv9wfc734rf8kvlba"; depends=[doParallel foreach stringr]; }; @@ -1304,9 +1313,8 @@ in with self; { DoubleML = derive2 { name="DoubleML"; version="0.4.1"; sha256="01mrak86wwyb83jnya0rk4wm4yp77sandzgkhzv8mia74w6p2h77"; depends=[checkmate clusterGeneration data_table mlr3 mlr3learners mlr3misc mlr3tuning mvtnorm R6 readstata13]; }; Dowd = derive2 { name="Dowd"; version="0.12"; sha256="1fgaq22n7gm8pqxdfkiayqgjfqjn7knjjjr1x12jgv77cv08xyjk"; depends=[bootstrap forecast MASS]; }; Dpit = derive2 { name="Dpit"; version="1.0"; sha256="02pnc00sk3bwxmxrg27638x0q62r7nsx2nr14zjjc5q880prdisv"; depends=[fitdistrplus gsl moments VGAM]; }; - DrBats = derive2 { name="DrBats"; version="0.1.5"; sha256="1iaffippp9kwfrwryf7klmn8nsm2k8pc0bkgpxcsl4vxyy2na3mp"; depends=[ade4 coda MASS Matrix rstan sde]; }; + DrBats = derive2 { name="DrBats"; version="0.1.6"; sha256="1623h8s6y4klq8xmj480ga2wl6n4c2f26v1dwysyvcrk6lnaghdm"; depends=[ade4 coda MASS Matrix rstan sde]; }; DrImpute = derive2 { name="DrImpute"; version="1.0"; sha256="1adzarrwqb282pqgx2yqswp9rpwd1naxsmar54kddr6qyd6b923b"; depends=[Rcpp RcppArmadillo]; }; - DrInsight = derive2 { name="DrInsight"; version="0.1.2"; sha256="1zz9i4aj0ijqfgp30wv0bvrgx2n003dysqg0pm13f7hni27819ff"; depends=[igraph qusage]; }; DramaAnalysis = derive2 { name="DramaAnalysis"; version="3.0.2"; sha256="0nsnwais0r592c50nphfzkr1bbygl67mriwsx7dxbvmpdsswlvl1"; depends=[data_table git2r httr readr reshape2 stringr tokenizers xml2]; }; DriftBurstHypothesis = derive2 { name="DriftBurstHypothesis"; version="0.4.0.1"; sha256="1pmsbv1rl79s520nxj536m8gf7xyfjskj8r88rxmxscbgp8c1xz2"; depends=[Rcpp RcppArmadillo xts zoo]; }; DrillR = derive2 { name="DrillR"; version="0.1"; sha256="0n7pim5kk0wfdjcc67v4vvdb7wyhn5bcgi2a12nbyfyydss7pk1g"; depends=[httr]; }; @@ -1367,12 +1375,12 @@ in with self; { EGRETci = derive2 { name="EGRETci"; version="2.0.4"; sha256="1g01a03smn5yp261cyk3x310m1mcv4bqyh8y123wam9gpa7dxrp6"; depends=[binom EGRET]; }; EHR = derive2 { name="EHR"; version="0.4-4"; sha256="0b42ny3xc936qgbfgibywpmancrbdvkcwwhy55lbqlm8xhzyr6s8"; depends=[data_table lubridate pkdata]; }; EHRtemporalVariability = derive2 { name="EHRtemporalVariability"; version="1.1.4"; sha256="02izrgl526znn4xs10c5l3gv0b5chmgr376i26nli988cypmf32h"; depends=[dplyr lubridate MASS plotly RColorBrewer scales viridis xts zoo]; }; - EIAdata = derive2 { name="EIAdata"; version="0.1.2"; sha256="0yssiylp516a7jbxzjsf28abm3d8rab03f2b93jy8vh1mmvpi2lg"; depends=[XML xts zoo]; }; + EIAdata = derive2 { name="EIAdata"; version="0.1.3"; sha256="0cx8x16jn8pfik7yd6vfqh23fqlfxnfj3ya42h5zbvsbka8rislh"; depends=[httr XML xts zoo]; }; EILA = derive2 { name="EILA"; version="0.1-2"; sha256="0wxl9k4fa0f7jadw3lvn97iwy7n2d02m8wvm9slnhr2n8r8sx3hb"; depends=[class quantreg]; }; EIX = derive2 { name="EIX"; version="1.2.0"; sha256="02ry0aqqnd0zh6zbvx1dbq3sdahyqcgabhkvbbw4ig0qk70w62aj"; depends=[DALEX data_table ggiraphExtra ggplot2 ggrepel iBreakDown MASS purrr scales tidyr xgboost]; }; EKMCMC = derive2 { name="EKMCMC"; version="1.1.2"; sha256="0filw1xikbv55h7xswlqifd30d43b9y3h2m6i0zv8v54y8mmszfg"; depends=[numDeriv]; }; - EL = derive2 { name="EL"; version="1.0"; sha256="13r7vjy2608h8jph8kwy69rnkg98b2v69117nrl728r3ayc46a18"; depends=[]; }; EL2Surv = derive2 { name="EL2Surv"; version="1.1"; sha256="0bn2481rf61qnia468y7k95hhazjaghrv919a2y9ar5wcz5nq2kk"; depends=[survival]; }; + ELCIC = derive2 { name="ELCIC"; version="0.2.0"; sha256="1iildkyiia2zinnfjyxvcmc1xd7chrcsdqzc0v7cl9b1jsqa8361"; depends=[bindata geepack MASS mvtnorm PoisNor wgeesel]; }; ELISAtools = derive2 { name="ELISAtools"; version="0.1.5"; sha256="18f2adhw85f0hsz5gb6xhi0w2phcq364xy9y1jri6ckzs8g0pny7"; depends=[minpack_lm R2HTML stringi]; }; ELMR = derive2 { name="ELMR"; version="1.0"; sha256="0pd3drv485xbdyfwm28kjpd0nd0zv1khfwzki1gh5p1gz9ndwr2x"; depends=[]; }; ELMSO = derive2 { name="ELMSO"; version="1.0.1"; sha256="14wnrqrbbfb37f3wp91qib28bcanflw3asv1y0v748n36x1xbv3m"; depends=[]; }; @@ -1387,6 +1395,7 @@ in with self; { EMDSVRhybrid = derive2 { name="EMDSVRhybrid"; version="0.1.0"; sha256="0wis8dh4xd5xldrrfzfr625pix2fvp139q6kj9ff2m6p5wafiabw"; depends=[e1071 EMD]; }; EML = derive2 { name="EML"; version="2.0.5"; sha256="0g4ilk2d68i1iz2b0ip6kngygvsw457x17f2vhfy3b26xf6ch2q1"; depends=[digest dplyr emld jqr jsonlite rmarkdown uuid xml2]; }; EMMAgeo = derive2 { name="EMMAgeo"; version="0.9.7"; sha256="1wz4zw45xfqbk589cpd188j7619h2ar2czfkisil9x8ksijfixls"; depends=[caTools GPArotation limSolve matrixStats shiny]; }; + EMMIXSSL = derive2 { name="EMMIXSSL"; version="1.1.0"; sha256="14zhb065amcs7w7kr3ygwpclnf0fxil8xbipb2w0pq24d091vlxd"; depends=[mvtnorm]; }; EMMIXgene = derive2 { name="EMMIXgene"; version="0.1.3"; sha256="0a5q78s9y6ba1641lrv87kglg39x9wbk5xg7ihzbpl4adrb5sz4f"; depends=[BH ggplot2 mclust Rcpp RcppArmadillo reshape scales]; }; EMMIXmfa = derive2 { name="EMMIXmfa"; version="2.0.11"; sha256="06lfmpw908chhzx512anqacixvvx3y02wm1n4wmpb890rd85n11r"; depends=[]; }; EMMLi = derive2 { name="EMMLi"; version="0.0.3"; sha256="1b36kyzvrdljmkysggv8jyaip78pj32ms0xhj2y568hd419lkh2p"; depends=[]; }; @@ -1400,7 +1409,7 @@ in with self; { EMVS = derive2 { name="EMVS"; version="1.2.1"; sha256="1aikms2i77hwv6hrk8kn9wrh1v5j5zm918cwdwm5s6cy8fcqf406"; depends=[Rcpp RcppArmadillo]; }; EMbC = derive2 { name="EMbC"; version="2.0.3"; sha256="0ns6jmshblf00n4harhls03q9c6h1wvgvjzn8jvr3kf4gm2iz2jd"; depends=[maptools mnormt RColorBrewer Rcpp RcppArmadillo sp]; }; EMpeaksR = derive2 { name="EMpeaksR"; version="0.2.0"; sha256="1f8s6p3h5594aajrvrx8iv5x8m97xbc1pynsrk6i13aw5r73ysb1"; depends=[]; }; - ENMTools = derive2 { name="ENMTools"; version="1.0.5"; sha256="1lvvby77j3abf3gmm12091mcgijxcg7vilr2j9q3fi5n87wqhl12"; depends=[dismo ENMeval forcats ggplot2 ggpubr gridExtra knitr lhs magrittr raster rgdal rgeos sp spatstat spatstat_core spatstat_geom]; }; + ENMTools = derive2 { name="ENMTools"; version="1.0.6"; sha256="0idjq7jk1yrbk9w0799x991n1sj71j09hkgn6dhwshgpyxh7c4qj"; depends=[dismo ENMeval forcats ggplot2 ggpubr gridExtra knitr lhs magrittr raster rgdal rgeos sp spatstat_geom spatstat_random]; }; ENMeval = derive2 { name="ENMeval"; version="2.0.3"; sha256="0h9wikxs01xhpkp1khhxnnqvg4fgmdvh37jh15nz7i4xilx1ffab"; depends=[dismo doParallel doSNOW dplyr foreach ggplot2 glmnet magrittr maxnet rangeModelMetadata raster rlang sp testthat tidyr]; }; EPGMr = derive2 { name="EPGMr"; version="1.0.0"; sha256="1ii4lccv4hyydy3sd5l7c22pgx27x3mdml20sfbdj85pmpyab6q9"; depends=[]; }; EPP = derive2 { name="EPP"; version="0.3.6.1"; sha256="015hp5f3nrf0hqi11cgsi43a97h9cvny4d75hfjd10zf0fj261h9"; depends=[assertthat curl deldir dplyr flexclust httr leaflet leaflet_extras maptools nngeo osrm plyr rgdal rgeos sf sp]; }; @@ -1415,8 +1424,8 @@ in with self; { ESEA = derive2 { name="ESEA"; version="1.0"; sha256="06r5lki32mxkznj6yxvlz0ikqcxm3jbaralv4qp9xrw6dy6yyg27"; depends=[igraph parmigene XML]; }; ESG = derive2 { name="ESG"; version="1.2"; sha256="17kw82dikcibqsdb1fvbx2x2f3shzbqggygabprcvwki8bg9hgni"; depends=[]; }; ESTER = derive2 { name="ESTER"; version="0.2.0"; sha256="1jiyqq5hgqc754r434sik9jnlpw66xz56cjdf5ig95qkffzsg224"; depends=[brms cowplot doParallel dplyr foreach ggplot2 lme4 magrittr rlang tidyr]; }; - ETAS = derive2 { name="ETAS"; version="0.4.7"; sha256="1l8l0vmar720jz893kv8d2gg1m1jyxh1dkanh9aaiivdw0wg6k9b"; depends=[fields goftest lattice maps Rcpp spatstat spatstat_core spatstat_geom]; }; - ETC = derive2 { name="ETC"; version="1.3"; sha256="1nvb9n0my7h1kq996mk91canxi6vxy3mzhrshrvm13ixvl48lkkh"; depends=[mvtnorm]; }; + ETAS = derive2 { name="ETAS"; version="0.4.9"; sha256="11sv5slr3s6w82ksgbw0qlzi9palznbzprq2n9iiifxz6ff5drvd"; depends=[fields goftest lattice maps Rcpp spatstat_core spatstat_geom spatstat_random]; }; + ETC = derive2 { name="ETC"; version="1.5"; sha256="16ciff8bf2p56941r83y7405sp5pfms63dwjd232ih3mnznjpc0f"; depends=[mvtnorm]; }; ETLUtils = derive2 { name="ETLUtils"; version="1.5"; sha256="0s0q4f3wzpdd87l3pnzysa8aq7zgz29589xnm65a6xfy9znbpzs3"; depends=[bit ff]; }; EValue = derive2 { name="EValue"; version="4.1.3"; sha256="0ip4cyipbs6g0znrdh5zs4xizmqgdznq8riggkgyv06wipgx9a2j"; depends=[boot dplyr ggplot2 metadat metafor MetaUtility]; }; EW = derive2 { name="EW"; version="1.1"; sha256="0wc3v9qisiikvlp28xhlgsxb92fhkm6vslia6d0vpihyai0p1h1g"; depends=[]; }; @@ -1427,14 +1436,13 @@ in with self; { Eagle = derive2 { name="Eagle"; version="2.5"; sha256="18y0hc5461gh7kp095xfpwpfnl7k3v545r8w6nrhabrhwsflrrij"; depends=[data_table fontawesome ggplot2 ggthemes mmap plotly R_utils Rcpp RcppEigen shiny shinyBS shinyFiles shinyjs shinythemes]; }; EasyABC = derive2 { name="EasyABC"; version="1.5"; sha256="17qv6y8sf2iwwqcv5wfg6sii259gv5jyr72dnfpir2bw78wb3mqx"; depends=[abc lhs MASS mnormt pls tensorA]; }; EasyDescribe = derive2 { name="EasyDescribe"; version="0.1.1"; sha256="15g37m28l40w71bvj02cbhfc6x77bjvr8mjr89iipdqzndp23g1i"; depends=[CATT fitdistrplus FSA gmodels multiCA nortest psych rcompanion]; }; - EasyHTMLReport = derive2 { name="EasyHTMLReport"; version="0.1.1"; sha256="1hgg8i7py7bx48cldyc7yydf0bggmbj3fx3kwiv9jh1x5wyh929z"; depends=[base64enc ggplot2 knitr markdown reshape2 scales xtable]; }; EasyMx = derive2 { name="EasyMx"; version="0.2-12"; sha256="00wj08nwv5zi5d4a1fss40f4cms4svam1hmmxvh60hvc55ygsc3z"; depends=[OpenMx]; }; EbayesThresh = derive2 { name="EbayesThresh"; version="1.4-12"; sha256="07a2dd3za2dc81n6m2xy794sclp3yw7f46lg1igaflh7m9407198"; depends=[wavethresh]; }; Ecdat = derive2 { name="Ecdat"; version="0.3-9"; sha256="112yg3v0pwssfw38nbbrrn1zrlg2h39brr79m3rdlp8hr810q92b"; depends=[Ecfun]; }; Ecfun = derive2 { name="Ecfun"; version="0.2-5"; sha256="0lwpgpjax149kyc9fzxdz0v4marm5agrhdgfmvm9956sslzksabj"; depends=[BMA fda jpeg MASS mvtnorm rvest stringi TeachingDemos tis xml2]; }; EcoDiet = derive2 { name="EcoDiet"; version="1.0.0"; sha256="19x2ypmsw6jnq1s0nqk3pdkwi5g3g92r6fgxrxlnyvd0jqi9l8b3"; depends=[coda ggplot2 rjags]; }; EcoHydRology = derive2 { name="EcoHydRology"; version="0.4.12.1"; sha256="075kgy6cxppkclk6nj5xs1f5yv9w8cpr09xwhf2101a6wswknb88"; depends=[DEoptim operators topmodel XML]; }; - EcoIndR = derive2 { name="EcoIndR"; version="1.7"; sha256="1sa6207zvmbgvl060i43yzsq6nb2mqgpvm2bzg742qll6y4nh217"; depends=[rgeos]; }; + EcoIndR = derive2 { name="EcoIndR"; version="1.8"; sha256="008wgp9zc8a8knz9ighgavrdm0yf37m5jahnq5kndjhld0359z6h"; depends=[rgeos]; }; EcoNetGen = derive2 { name="EcoNetGen"; version="0.2.3"; sha256="05j8m9vzkwlsw1h69s5myhbg85vyhqdxcl9r5mdwsrk9f58wajmz"; depends=[ggplot2 igraph]; }; EcoTroph = derive2 { name="EcoTroph"; version="1.6"; sha256="0zi6g0ra107s47r32mm9h6r1wll3avi0mpjmhcr0nj9y48nv14w3"; depends=[XML]; }; EcoVirtual = derive2 { name="EcoVirtual"; version="1.1"; sha256="1aryl2sb5ak390lgnm427ilm6xv9lmsjhwdnapzc033zvqb099gj"; depends=[]; }; @@ -1449,6 +1457,7 @@ in with self; { EffectTreat = derive2 { name="EffectTreat"; version="1.1"; sha256="1kw1vq9y1q3xyiqsk855wjn9jqkzdh6h4xklbl9kvbqsvvhhsgkz"; depends=[]; }; EffectsRelBaseline = derive2 { name="EffectsRelBaseline"; version="0.5"; sha256="1dsnakcrgmlx44599ii92wvhxbxrh0hij59709wsskx1x1152zvh"; depends=[]; }; EfficientMaxEigenpair = derive2 { name="EfficientMaxEigenpair"; version="0.1.4"; sha256="1s0i9a2vk2g4f5gadsvzjfkw91hcjsrbyjg2vgnj1v17xrwgp40w"; depends=[]; }; + EgoCor = derive2 { name="EgoCor"; version="0.1.0"; sha256="197wf7v51qf2wc2gks68v3kpkcv0fmrbj3wrksixh1sphbl52rig"; depends=[geoR lme4 Rdpack shiny SpatialTools]; }; EigenR = derive2 { name="EigenR"; version="1.2.2"; sha256="02cg898hm2byhnbfihg8mnygjsfpyrpq4y3lw2dnrglcj75qr71b"; depends=[Rcpp RcppEigen]; }; EleChemr = derive2 { name="EleChemr"; version="1.2.0"; sha256="1wr2lkaf56qxsnqi7mgbgzy72lhkr0xlr1w1l9hy1dpmmqcqw7l3"; depends=[ggplot2]; }; ElliptCopulas = derive2 { name="ElliptCopulas"; version="0.1.1"; sha256="00cxyn6w9zy993lqyyn9yjvpw7h4wckp63s3apf1jv8b09l0kdn5"; depends=[Matrix pcaPP Runuran]; }; @@ -1458,7 +1467,7 @@ in with self; { ElstonStewart = derive2 { name="ElstonStewart"; version="1.1"; sha256="1y2g4x3fhi78c2406bk8r8c3x9zhx8ya3qlbnypdm65j0minixsn"; depends=[digest kinship2]; }; EmbedSOM = derive2 { name="EmbedSOM"; version="2.1.1"; sha256="1w61dni4vsglxqdhwdy5dcmzb6hx1wb9fhfki8wmal1yaza23ljy"; depends=[FNN ggplot2 igraph Matrix Rtsne umap uwot]; }; EmiStatR = derive2 { name="EmiStatR"; version="1.2.3.0"; sha256="1cwzzkynhnpjd1slnifdmkrshfpv99ryilxj27f98kwgbnb6i81a"; depends=[doParallel foreach lattice xts zoo]; }; - EmissV = derive2 { name="EmissV"; version="0.665.5.2"; sha256="056xg4gmjwykgjzd5x21blkvwprfw8yl8rw8h1ym0kp1cljy2qdm"; depends=[data_table ncdf4 raster rgdal sf sp units]; }; + EmissV = derive2 { name="EmissV"; version="0.665.6.0"; sha256="06bsn9lgi8bzcs073d664i1q61bqg4w08x60qk9scvxhb3b5q49i"; depends=[data_table ncdf4 raster sf sp units]; }; EmpiricalCalibration = derive2 { name="EmpiricalCalibration"; version="3.0.0"; sha256="02mcnxd3ndz7zafpxhyf52am5ncbwz743apy2n3q0i07hs33blyk"; depends=[ggplot2 gridExtra Rcpp rlang]; }; EncDNA = derive2 { name="EncDNA"; version="1.0.2"; sha256="0wy2cmcvyqjhg5mqbvdzmihfv8swx7ym2n9mjdqgx0kgnc7k614y"; depends=[Biostrings]; }; EnergyOnlineCPM = derive2 { name="EnergyOnlineCPM"; version="1.0"; sha256="1a3wvclqdwcvq5inhliwjnd7xzqbjvzs8h8ncy6qlhjq6s5n7nm8"; depends=[energy MASS]; }; @@ -1475,7 +1484,7 @@ in with self; { EnvExpInd = derive2 { name="EnvExpInd"; version="0.1.0"; sha256="063f3c10a7k9j3f85xilj1s6dd9ky5sw8sbvhzkhg5hg92c9dpns"; depends=[dplyr gstat maptools RCurl sp stringi zoo]; }; EnvNJ = derive2 { name="EnvNJ"; version="0.1.3"; sha256="1wxb4zhhn7iahgsi7rg1vmfaa3vypifqx7kkcvmmgk0263z4sj5v"; depends=[ape bio3d phangorn philentropy seqinr stringr]; }; EnvNicheR = derive2 { name="EnvNicheR"; version="1.4"; sha256="0hxx9wmzlw0clvdgdsy8msc78nvm81j3naxr57i7lqqa360sjy3a"; depends=[IDPmisc]; }; - EnvStats = derive2 { name="EnvStats"; version="2.5.0"; sha256="1xx7cn6jdr5917fdknmwdd8da8s8a6g5ppd6f09l3gnvr5kalxsg"; depends=[ggplot2 MASS nortest]; }; + EnvStats = derive2 { name="EnvStats"; version="2.7.0"; sha256="10axzd4458lwvjibkk3i1szpmnx1hnhair3ihclwfmh8nvaz19h9"; depends=[ggplot2 MASS nortest]; }; EnviroPRA = derive2 { name="EnviroPRA"; version="1.0"; sha256="0yirh3vy7wap0qmm3kvjz9y68gcvp9i8qshv80wh8aijxwklpr8n"; depends=[fitdistrplus kSamples MASS truncdist]; }; EnviroStat = derive2 { name="EnviroStat"; version="0.4-2"; sha256="0ckax6vkx0vwczn21nm1dr8skvpm59xs3dgsa5bs54a3xhn5z9hs"; depends=[MASS]; }; Epi = derive2 { name="Epi"; version="2.44"; sha256="1wcxr1f7irgfdwzz4vf67114yhxrhxxxnhy4hfaww0zy91vzxx10"; depends=[cmprsk data_table dplyr etm MASS Matrix mgcv numDeriv plyr purrr survival zoo]; }; @@ -1524,6 +1533,7 @@ in with self; { ExPosition = derive2 { name="ExPosition"; version="2.8.23"; sha256="0x9400ggmgrnaish0cfgnyvw549g4ibfv9aj6vzq7j68n58vq405"; depends=[prettyGraphs]; }; Exact = derive2 { name="Exact"; version="3.1"; sha256="1kz3hw11sl142mai4ly2r85rwdbjz8q7b38ybmjym6r0n5qmqzyn"; depends=[rootSolve]; }; ExactCIdiff = derive2 { name="ExactCIdiff"; version="1.3"; sha256="1vayq8x7gk1fnr1jrlscg6rb58wncriybw4m1z0glfgzr259103y"; depends=[]; }; + ExactMed = derive2 { name="ExactMed"; version="0.1.0"; sha256="0mnmlfnpqkz82iphga3b3xd85xh7jb211m6ahx4jf6y6y4rv5isj"; depends=[logistf]; }; ExactMultinom = derive2 { name="ExactMultinom"; version="0.1.2"; sha256="1ygsiwcsmda0pbp7lzr03sb461mr9fff7hxp1lil40y9z0xgdmmb"; depends=[Rcpp]; }; ExamPAData = derive2 { name="ExamPAData"; version="0.5.0"; sha256="1wjzg5b3xcl5njk95h2c8xz4k727d62182nbf49qrvd3nbd3bscj"; depends=[]; }; ExceedanceTools = derive2 { name="ExceedanceTools"; version="1.2.2"; sha256="084sc6pggfbcyavhfnd5whyigw7dyjhb4cxmxi0kh2jiam5k8v5b"; depends=[SpatialTools splancs]; }; @@ -1552,20 +1562,20 @@ in with self; { FAIRmaterials = derive2 { name="FAIRmaterials"; version="0.0.2"; sha256="169hcwjm0plhkqbhz3b5cqgc2nnkibn94cimrs39sn9z62radb7x"; depends=[dplyr glue stringr]; }; FAMILY = derive2 { name="FAMILY"; version="0.1.19"; sha256="1912l2zj2cmh8yx8lkg8fpgvfddn6wbi1vrr4yx04mh73gk1s5mk"; depends=[pheatmap pROC]; }; FAMT = derive2 { name="FAMT"; version="2.5"; sha256="0mn85yy9zmiklfwqjbhbhzbawwp2yqrm9pvm8jhasn9c3kw1pcp2"; depends=[impute mnormt]; }; - FAMetA = derive2 { name="FAMetA"; version="0.1.2"; sha256="1ik3dl9sfcnba9kg0mbgnjiny1zvs3cmqgixi04yypmyqxs4d2mq"; depends=[accucor gplots gtools knitr LipidMS minpack_lm plyr rmarkdown scales tidyr]; }; + FAMetA = derive2 { name="FAMetA"; version="0.1.4"; sha256="1c5y3x06ln1w8nkwmnc13hn8jhj0vbmwbx70kylcf93a1fq5rkbz"; depends=[accucor gplots gtools knitr LipidMS minpack_lm plyr rmarkdown scales tidyr]; }; FAMoS = derive2 { name="FAMoS"; version="0.3.0"; sha256="14gr9wv9bpibk0rrzzwijvdncx1fgnpbv55nqzbb4jhq7fdckmsa"; depends=[future R_utils]; }; FAO56 = derive2 { name="FAO56"; version="0.1.0"; sha256="0dl56gdsmx3ixxakz2xqrirss5xxbz62mvp7jdrgaizrn8xd802i"; depends=[]; }; FAOSTAT = derive2 { name="FAOSTAT"; version="2.2.3"; sha256="12wjcjyjdw8jgla9yqddr3ibi6v47lfdlnyf5s5d8ms3ck6ic8sl"; depends=[classInt data_table ggplot2 labeling MASS plyr RJSONIO XML]; }; FARDEEP = derive2 { name="FARDEEP"; version="1.0.1"; sha256="0blvjakcpkh9vpxryk7qyaqnija0r375ckv37kjlr34xg8pg9qnm"; depends=[nnls preprocessCore]; }; FASeg = derive2 { name="FASeg"; version="0.1.9"; sha256="0lazx8dyycyycr8467m9rkxkxhp4r2w737kpkb40y59wncmbvkik"; depends=[]; }; - FAVAR = derive2 { name="FAVAR"; version="0.1.0"; sha256="04ajrq5wii4mccnaxn3wsn7kdfd2pydxaygk6dnbhc6610xs8bc5"; depends=[bvartools coda doParallel dplyr foreach ggplot2 magrittr matlab Matrix MCMCpack]; }; - FAdist = derive2 { name="FAdist"; version="2.3"; sha256="0vy9yavg5apawjfvch5a7abrmsnx36zhlk8jff3dvcx409lykrrn"; depends=[]; }; - FAmle = derive2 { name="FAmle"; version="1.3.5"; sha256="1j6x5bbxnrwp9d6xlxc861xslawzfqhi3d11nphyc97afsz0ymnr"; depends=[mvtnorm]; }; + FAdist = derive2 { name="FAdist"; version="2.4"; sha256="166w9i8fgklx12jiq4n7l081znmdi6yvazhlxny4rgqif0z2kr9q"; depends=[]; }; + FAmle = derive2 { name="FAmle"; version="1.3.7"; sha256="1g6jacbphbfqn0kkfgdv0g9v8xnzx70872byy0rxp5g2ags6hj2b"; depends=[mvtnorm]; }; FAwR = derive2 { name="FAwR"; version="1.1.2"; sha256="1x90wvp0w7fhid7i5160b4fiv4xn5mpvy33zjzy0mvqvp0yp8xf0"; depends=[glpkAPI lattice MASS]; }; FBFsearch = derive2 { name="FBFsearch"; version="1.1"; sha256="17fi501prnwwy5dh7kv7cx2zlz2dknjj542ga024s7jvg7i2rhg0"; depends=[Rcpp RcppArmadillo]; }; FBN = derive2 { name="FBN"; version="1.5.1"; sha256="0723krsddfi4cy2i3vd6pi483qjxniychnsi9r8nw7dm052nb4sf"; depends=[]; }; FCGR = derive2 { name="FCGR"; version="1.0-0"; sha256="015nnnc9fasx0qjrc3lbxv14rqwyx36xzsw9076grwm5pqahrdsb"; depends=[kerdiest KernSmooth MASS mgcv nlme pspline sfsmisc]; }; FCMapper = derive2 { name="FCMapper"; version="1.1"; sha256="1yjh8rs65nqslvwv7x4rif469zds41s7v3vhq6pca1y17kvj2in1"; depends=[igraph]; }; + FCO = derive2 { name="FCO"; version="0.7.2"; sha256="1bavlkrd0957lxv3n8wqv83sxddpihrwr91f2sgshwlczksl05kn"; depends=[checkmate data_table lavaan semTools]; }; FCPS = derive2 { name="FCPS"; version="1.3.0"; sha256="0cz04pjhps7grnvx50gnpmhlp4rvl9xx1dnsabn2pg075y5r5bgk"; depends=[DataVisualizations ggplot2 mclust]; }; FCSlib = derive2 { name="FCSlib"; version="1.3.0"; sha256="1191ba6dwpakcdnbcq61zm5xq24isxjnn98nmvk67fpf1ycw70w9"; depends=[bitops fields stringr tiff]; }; FCVAR = derive2 { name="FCVAR"; version="0.1.1"; sha256="1vnfy3485mm29w0hzkmpr50yc9prmgha9hxxb7k9b9li3pzyhl17"; depends=[fracdist pracma]; }; @@ -1576,6 +1586,7 @@ in with self; { FDRsampsize = derive2 { name="FDRsampsize"; version="1.0"; sha256="0g8kawzyi9x5yndvh330wzqw6rvcnprwq56ngd0j6z51hvvw8qhw"; depends=[]; }; FDX = derive2 { name="FDX"; version="1.0.4"; sha256="15qjy216n87ylk8kwjhgz0mwdhgy57xn2l8x38ffgff3n3v0gwcn"; depends=[DiscreteFDR PoissonBinomial pracma Rcpp]; }; FDboost = derive2 { name="FDboost"; version="1.0-0"; sha256="1227fda2m8lsq3cndv0xgbgbcfdxhc4fjiyj2dmha1z4sycd7a28"; depends=[gamboostLSS MASS Matrix mboost mgcv stabs zoo]; }; + FEA = derive2 { name="FEA"; version="0.0.1"; sha256="0rg7l5hmaksiz5hg8llwa5kk17by29qvqncyksv16bf8rsjlm732"; depends=[geometry geosphere MASS ptinpoly sp]; }; FENmlm = derive2 { name="FENmlm"; version="2.4.3"; sha256="1a205a4iv54haixanyzx210lzqg7cnryjvqayvkdj1lhmdql4anw"; depends=[Formula MASS numDeriv Rcpp]; }; FER = derive2 { name="FER"; version="0.94"; sha256="0319dz0qvk8s9cfngqas3j212bw0f4rzw3gqcd7r7sl0249dla7p"; depends=[statmod]; }; FESta = derive2 { name="FESta"; version="1.0.0"; sha256="1kf5iqw8x8079gjaxicrgax5l798l8hxcc5y83l5pqh0ync5bxm6"; depends=[]; }; @@ -1588,6 +1599,7 @@ in with self; { FHDI = derive2 { name="FHDI"; version="1.4.1"; sha256="1n1rbrqdphp0prmkili6rnpxwdb7fgwsgncllr6yxlrkr5rb76pm"; depends=[]; }; FHtest = derive2 { name="FHtest"; version="1.5"; sha256="00mql2r4f5hxhdqf27q3x9s5rz2zzakx2myym97b1w1s7c5znl4q"; depends=[interval KMsurv MASS perm survival]; }; FI = derive2 { name="FI"; version="1.0"; sha256="17qzl8qvxklpqrzsmvw4wq3lyqz3zkidr7ihxc4vdzmmz69pyh2f"; depends=[]; }; + FIESTAutils = derive2 { name="FIESTAutils"; version="1.0.0"; sha256="144q4z6g5lflha3wdizc09lpwr2bgxgpbq4bbmflr2ijrq25zy88"; depends=[data_table DBI hbsae JoSAE mase nlme RColorBrewer Rcpp rgdal RPostgreSQL RSQLite sae sf sp sqldf units xml2]; }; FILEST = derive2 { name="FILEST"; version="1.1.2"; sha256="0x95in9yad93j8kbxjykz04x756i1c1cq854c220cc0l3rm3npnl"; depends=[KRIS rARPACK]; }; FIT = derive2 { name="FIT"; version="0.0.6"; sha256="1nkjms9cvigc9sjha1krzhd3nmwsfh8pi0f1plf5k8zpb773zzb2"; depends=[gglasso MASS Rcpp RcppEigen XML]; }; FITSio = derive2 { name="FITSio"; version="2.1-6"; sha256="1qch6z9r8h95jijjdwsi81majgacl42ryzlkn0m1wifkly9mjjrb"; depends=[]; }; @@ -1598,6 +1610,7 @@ in with self; { FLLat = derive2 { name="FLLat"; version="1.2-1"; sha256="0306bpwp2az4x4m5sv88hlh7vs0y5isfby7lxrn2gjnk76gg6mw1"; depends=[gplots]; }; FLR = derive2 { name="FLR"; version="1.0"; sha256="0k50vi73qj7sjps0s6b2hq1cmpa4qr2vwkpd2wv2w1hhhrj8lm0n"; depends=[combinat]; }; FLSSS = derive2 { name="FLSSS"; version="8.6.6"; sha256="0kw28zmvgdy4zmj2vnrs84n0rg6jvqj3x8f3ihjjkzkwqrqyiia9"; depends=[Rcpp RcppParallel]; }; + FLightR = derive2 { name="FLightR"; version="0.5.2"; sha256="0scbz1c3pm40v8h4h5qxckrpg2zixx29g9wwxiq06wlc7vajlh77"; depends=[bit CircStats circular fields ggmap ggplot2 ggsn maptools mgcv nlme RcppArmadillo rgdal rgeos sp truncnorm]; }; FMAdist = derive2 { name="FMAdist"; version="0.1.0"; sha256="0aa4sw93ia6cp386hrq6x448x4w0p6k198rjaqs474j25gqgxrv0"; depends=[EnvStats extraDistr fitdistrplus MASS quadprog STAR]; }; FMC = derive2 { name="FMC"; version="1.0.0"; sha256="1pfqxx7slgcmw4al7i8hy59f4han6b0b7b5az7yh1mscdnghl9bj"; depends=[minimalRSD]; }; FMCCSD = derive2 { name="FMCCSD"; version="1.0"; sha256="0c50km5ba6biq9p3mycxhy00ij2gr6y5zf3q8ycq0g1mbk8ybfb7"; depends=[numDeriv orthopolynom Rcpp RcppArmadillo splines2]; }; @@ -1621,12 +1634,12 @@ in with self; { FREEtree = derive2 { name="FREEtree"; version="0.1.0"; sha256="1i2liqbcg993snj5vq341mmafzhn1yrwljvx4f3kyzy0pa59k6rn"; depends=[glmertree MASS pre WGCNA]; }; FREQ = derive2 { name="FREQ"; version="1.0"; sha256="01nra30pbnqdd63pa87lcws3hnhhzybcjvx2jqyxjghn6khz47j0"; depends=[]; }; FRESA_CAD = derive2 { name="FRESA.CAD"; version="3.3.1"; sha256="1d8ya1pqy1zc9hxp7s211n0wa3n63jgpxh5ngysbh0dn488l8vgg"; depends=[Hmisc miscTools pROC Rcpp RcppArmadillo stringr]; }; - FRK = derive2 { name="FRK"; version="2.0.3"; sha256="0xyb3sb22vvsa8ymlcpagjml66ykyny8jgd4rq31k4fsq4ki5xsp"; depends=[digest dplyr ggplot2 ggpubr Hmisc Matrix plyr Rcpp RcppEigen reshape2 scales sp spacetime sparseinv statmod TMB]; }; - FSA = derive2 { name="FSA"; version="0.9.1"; sha256="19acr6cwy4qh78d0zyawwrpkl6kkv88bqzyz4a40b3ajyg69cqbn"; depends=[car dplyr dunn_test lmtest plotrix sciplot withr]; }; - FSAdata = derive2 { name="FSAdata"; version="0.3.8"; sha256="0i7wkz0baxcf1dv6qvc891b4ja4x65p4qicil472k6a9gcf5d4qm"; depends=[]; }; + FRK = derive2 { name="FRK"; version="2.0.4"; sha256="119r0hnmffmlj27v0bwcrq99k4lg5dzws4m2nskddr4v37wpwpv8"; depends=[digest dplyr ggplot2 ggpubr Hmisc Matrix plyr Rcpp RcppEigen reshape2 scales sp spacetime sparseinv statmod TMB]; }; + FSA = derive2 { name="FSA"; version="0.9.3"; sha256="10ax191r71gny976hgxgs0gz2548sjjaq3hqy7xkzbj2mcmjq41w"; depends=[car dunn_test lmtest plotrix withr]; }; + FSAdata = derive2 { name="FSAdata"; version="0.3.9"; sha256="1ycllz83lmbd93fdrkj0sjg8bygivp60fv768kk0diamjb16xlmq"; depends=[]; }; FSDAM = derive2 { name="FSDAM"; version="2020.11-18"; sha256="09l7zvmbvmbcr5pxizdhs5fn79r6cl4ic0hsz2bazdymsqv3s3nm"; depends=[kyotil reticulate]; }; FSInteract = derive2 { name="FSInteract"; version="0.1.2"; sha256="1aci1398aaz0nrl5jy6yh7xik355wf7pwngrsak4qsi94vdj05iy"; depends=[Matrix Rcpp]; }; - FSK2R = derive2 { name="FSK2R"; version="0.1.2"; sha256="0baar5dg9zz89bz4f9x074qknxs296bdclipdy8m1ljzclhxpsbf"; depends=[dplyr googlesheets purrr R_utils readtext readxl rjson rlang shiny stringr tibble tidyr XML xml2 zip]; }; + FSK2R = derive2 { name="FSK2R"; version="0.1.3"; sha256="0hsrg49q42by4i3dywi59wwy5h56fnfdr10s6rk1y9dyliksmj43"; depends=[dplyr purrr R_utils readtext readxl rjson rlang shiny tibble tidyr XML xml2 zip]; }; FSM = derive2 { name="FSM"; version="1.0.0"; sha256="03w182a9i7mra7wpvkm4q4kwhzjs5kc9h4hh26gygl49jkcvril8"; depends=[]; }; FSMUMI = derive2 { name="FSMUMI"; version="1.0"; sha256="06ri1zi86cm4arjdlp2pha2bvcc8vz6irvd9n3ja074hv62wxcw4"; depends=[FuzzyR lsa]; }; FSSF = derive2 { name="FSSF"; version="0.1.1"; sha256="024g2rv64yqxmbbwrbkpkrzdfshl0n6jll6axsgsp4q4ia4r9401"; depends=[Rcpp RcppArmadillo]; }; @@ -1642,9 +1655,9 @@ in with self; { FactoClass = derive2 { name="FactoClass"; version="1.2.7"; sha256="0hvlr9cw6wfckl8rzl5qqyp0h8rv8gcnyj6x930jq7h44kj0ji7d"; depends=[ade4 ggplot2 ggrepel KernSmooth scatterplot3d xtable]; }; FactoInvestigate = derive2 { name="FactoInvestigate"; version="1.7"; sha256="0lndh80pmr5zhhh7j9lhxl4j007rak5gh3dwxd1883cy0d6whjs9"; depends=[FactoMineR ggplot2 rmarkdown rrcov]; }; FactoMineR = derive2 { name="FactoMineR"; version="2.4"; sha256="0lg8n9fxxk46nchnj4pbpqqf4swxfsq7r9jzr36dmd36kb7avqxr"; depends=[car cluster DT ellipse flashClust ggplot2 ggrepel lattice leaps MASS scatterplot3d]; }; - FactorAssumptions = derive2 { name="FactorAssumptions"; version="1.1.2"; sha256="0k5jjqfajrq5wc0vp07s6kbfyjks6124hpy09nxw2blrai66vhcm"; depends=[MASS psych]; }; + FactorAssumptions = derive2 { name="FactorAssumptions"; version="2.0.1"; sha256="0d7dh67r8s0v952palhx9h6bhhlxw9xcjbj7dxsp2hdhwap72s2y"; depends=[MASS psych]; }; FactorCopula = derive2 { name="FactorCopula"; version="0.8"; sha256="1zrla429hmqlnjxkyscwcs58fav65wwyk1h2m4kwzsqf3g6hqnyr"; depends=[abind matlab polycor statmod VineCopula]; }; - FactorsR = derive2 { name="FactorsR"; version="1.4"; sha256="1nw63j9bi4x09pgdvdml0w0qxfy1dda5hkxbhd3d6f7rky1z0nyf"; depends=[]; }; + FactorsR = derive2 { name="FactorsR"; version="1.5"; sha256="1rla44g75hrqalrblr1yaawmyixmivlacn50marqgd9fjh8blgcd"; depends=[]; }; Factoshiny = derive2 { name="Factoshiny"; version="2.4"; sha256="0szdpdghaqrfjdx3c9klgww8i09dh69500sls2lyjz6c8gi80vcx"; depends=[colourpicker DT FactoInvestigate FactoMineR ggplot2 ggrepel missMDA shiny shinydashboard shinyjqui]; }; Fahrmeir = derive2 { name="Fahrmeir"; version="2016.5.31"; sha256="16fbc1zb9x9p04bl7y5nd375pha6bd3hfqqchlk1bqxrj4879y5g"; depends=[]; }; FairMclus = derive2 { name="FairMclus"; version="2.2.1"; sha256="0mhccn6yyf35qb856psh3dpiwdf24l3w2lqr643lkn38lhbmyvn8"; depends=[cluster data_table doParallel dplyr foreach irr magrittr rlist tidyr]; }; @@ -1658,7 +1671,8 @@ in with self; { FastGP = derive2 { name="FastGP"; version="1.2"; sha256="120qai1yw3yhwm762zridk78n4qclpivwm9f2hkij4bz851qibqv"; depends=[MASS mvtnorm rbenchmark Rcpp RcppEigen]; }; FastGaSP = derive2 { name="FastGaSP"; version="0.5.2"; sha256="1i54gxnc27fjgdbcrf2n1s5p6jgadcz2v4g0hq4xay0kfr593a7g"; depends=[Rcpp RcppEigen RobustGaSP]; }; FastHCS = derive2 { name="FastHCS"; version="0.0.7"; sha256="0l3fi3siwg2jhsj0jbhgccx8pnwd8h8f4z37g1najb41hw8dwn8d"; depends=[matrixStats Rcpp RcppEigen]; }; - FastJM = derive2 { name="FastJM"; version="1.0.1"; sha256="1l2m4spma6p146wp2fi4gd0hpn8bfhrawvlscm05mxzfr405f15k"; depends=[dplyr MASS mvtnorm nlme Rcpp RcppEigen statmod survival]; }; + FastImputation = derive2 { name="FastImputation"; version="2.1"; sha256="1h6nvrb7d0l5vdqzxi20cgh6yw90mmjrzbnn1lrkwr3n9fzfqw0l"; depends=[Matrix]; }; + FastJM = derive2 { name="FastJM"; version="1.1.2"; sha256="1ip5s8jrgkyrs51i7n0xqv2gicpp4kdizm7h6kff9da675bcv9jr"; depends=[dplyr MASS mvtnorm nlme Rcpp RcppEigen statmod survival]; }; FastKM = derive2 { name="FastKM"; version="1.0"; sha256="0sqxd2pg9y6yn1lnxni32ca3bgbmz04k9z37q9pzgijvf9qvik3f"; depends=[rARPACK]; }; FastKNN = derive2 { name="FastKNN"; version="0.0.1"; sha256="1iz8ybzkvbyqwb00s7cp1zvy9xlmyjid441mf62dq08a0zncnyss"; depends=[assertthat pdist]; }; FastLZeroSpikeInference = derive2 { name="FastLZeroSpikeInference"; version="2018.12.10"; sha256="0ybpmns7bc1j5xzqjl7734grihmvvpa3h52gixv3h70l0r89d8ys"; depends=[]; }; @@ -1700,7 +1714,6 @@ in with self; { FishResp = derive2 { name="FishResp"; version="1.1.0"; sha256="12b0akpx8xjarhjrn47x930vqh3kswm784xd1k14fx6bxjjy8ais"; depends=[chron lattice mclust respirometry rMR]; }; FisherEM = derive2 { name="FisherEM"; version="1.6"; sha256="18xn0hnj5diq7falrjl04abqyyrvyzaikb9l6wh7hfhflhsd382c"; depends=[elasticnet ellipse ggplot2 MASS plyr]; }; FitAR = derive2 { name="FitAR"; version="1.94"; sha256="1mkk3kvfq4v0pdabnhbwrk31ji2mv2v6ns16xsvvr1qyg2fnx6hq"; depends=[bestglm lattice leaps ltsa]; }; - FitARMA = derive2 { name="FitARMA"; version="1.6.1"; sha256="02di0pkz6hh92glpn3li6z9azkcqa64ja8zfpy0mkh1l97mw6jsv"; depends=[FitAR]; }; FitUltD = derive2 { name="FitUltD"; version="3.1.0"; sha256="17fj211riybq71k63wjfv2ndc2h46ay5svrac2v5i3b92cb9hkbv"; depends=[ADGofTest assertthat cowplot fitdistrplus ggplot2 MASS mclust purrr]; }; FixSeqMTP = derive2 { name="FixSeqMTP"; version="0.1.2"; sha256="0v1cwq8gapgandm7wiw8p6av6qigydlpmwi6w02p1y7f0hf5ifnp"; depends=[]; }; FixedPoint = derive2 { name="FixedPoint"; version="0.6.2"; sha256="1jgqc7m3cvyvxlpkvcqqyfmjl8harsb4kl7msk3qd8mn4qjvvyms"; depends=[MASS]; }; @@ -1715,7 +1728,8 @@ in with self; { FlowScreen = derive2 { name="FlowScreen"; version="1.2.6"; sha256="1s9xyrvfsgrl2zxm2an5qj3rs1qx7v7j8wc83jzl28pkwa5xr351"; depends=[changepoint evir zyp]; }; FluMoDL = derive2 { name="FluMoDL"; version="0.0.3"; sha256="0vp3w6hpph6svz8940w9yk9c5iv4n9mj94f9si1ks0xjbi948rqd"; depends=[dlnm mvmeta tsModel]; }; FlyingR = derive2 { name="FlyingR"; version="0.2.0"; sha256="0smishimssanzssndbwh9d276sq8vdldpzb3ww9c4nlwypxjmr8z"; depends=[kableExtra knitr Rcpp rmarkdown]; }; - FoReco = derive2 { name="FoReco"; version="0.2.1"; sha256="19mrw1yah2nzajgzai1vxm38pp8mry3143wjm3g3447iajjh1hry"; depends=[cli corpcor mathjaxr Matrix osqp]; }; + FlywayNet = derive2 { name="FlywayNet"; version="0.1.0"; sha256="00sp3m3iv6qifrkk0rncmzidv15b5fj138g0mai95lp280b040va"; depends=[EasyABC igraph modeest Rcpp]; }; + FoReco = derive2 { name="FoReco"; version="0.2.2"; sha256="01ak3dpvsmlvzb2k714scxsaavihfjsi4gwsqyv0hxpq457sd3rr"; depends=[cli corpcor mathjaxr Matrix osqp]; }; ForIT = derive2 { name="ForIT"; version="1.0"; sha256="0mi2cw09mbc54s8qwcwxin2na1gfyi60cdssy2ncynma7alq3733"; depends=[]; }; ForImp = derive2 { name="ForImp"; version="1.0.3"; sha256="0ai4i6q233sdsi8xilpbkxjqdf4pxw93clkdkhcxal6q43rnf7vd"; depends=[homals mvtnorm sampling]; }; ForeCA = derive2 { name="ForeCA"; version="0.2.7"; sha256="1falhz9v0z76h60gz66rh9wvk3jsjv8fvbkhkx9jmzbrkla397cd"; depends=[astsa MASS reshape2]; }; @@ -1733,7 +1747,7 @@ in with self; { FourWayHMM = derive2 { name="FourWayHMM"; version="1.0.0"; sha256="0zi42d214dq70ypgj8g57fwjbqfih4z0956njpj2739aqsnjq5v4"; depends=[data_table doSNOW foreach LaplacesDemon mclust snow tensor tidyr withr]; }; FourgameteP = derive2 { name="FourgameteP"; version="0.1.0"; sha256="15yn47737768fkjjv8ykc9lw7x58pq44k90d9d4c9hp20zw5f3by"; depends=[]; }; FrF2 = derive2 { name="FrF2"; version="2.2-2"; sha256="048awbsyzpjmr0kmz3k5yi5vksa9iiffabp6q8xsww097vcngxzb"; depends=[DoE_base igraph scatterplot3d sfsmisc]; }; - FrF2_catlg128 = derive2 { name="FrF2.catlg128"; version="1.2-1"; sha256="0i4m5zb9dazpvmnp8wh3k51bm0vykh4gncnhdg71mfk4hzrfpdac"; depends=[FrF2]; }; + FrF2_catlg128 = derive2 { name="FrF2.catlg128"; version="1.2-2"; sha256="0r5v3922gsrsyrdin5dwdygnj9i23gwa67p7kll6ac6xxp8gig4w"; depends=[FrF2]; }; FracKrigingR = derive2 { name="FracKrigingR"; version="1.0.0"; sha256="08ai69wnpa4l1gpmgrs9c9ad9h56h0x55v3gnbci30yxkivbnvxw"; depends=[clusterGeneration psych]; }; FractalParameterEstimation = derive2 { name="FractalParameterEstimation"; version="1.1.2"; sha256="16xm2g723dm1n1h6as6yvy92sigzhj31f269g5rrzqjcd4d5m8an"; depends=[]; }; Fragman = derive2 { name="Fragman"; version="1.0.9"; sha256="03vmvmnyza4i46v1awkdjz6ccbsiq49dm0mlmwsm801rq6yfihgp"; depends=[]; }; @@ -1743,7 +1757,6 @@ in with self; { Fstability = derive2 { name="Fstability"; version="0.1.2"; sha256="0kscdmrs5namvhi112b47c811w0bg9s3xg48mfa566pxwxz1nv45"; depends=[]; }; FunCC = derive2 { name="FunCC"; version="1.0"; sha256="0n8fnrq3grsxxcz1841d3d643nyrwc7y15na1205zxq6rmdjx7wa"; depends=[biclust ggplot2 narray RColorBrewer reshape]; }; FunChisq = derive2 { name="FunChisq"; version="2.5.2"; sha256="0ds8gx86bi882nmdlivvigr53kq1dcq4cqj03szg44j8p6q3vhkx"; depends=[BH dqrng Rcpp Rdpack]; }; - FunCluster = derive2 { name="FunCluster"; version="1.09"; sha256="0i73asn1w4s6ydf2ddn5wpr0mwbbxzgmaly1pslarzkx71wk03fz"; depends=[cluster Hmisc]; }; FunWithNumbers = derive2 { name="FunWithNumbers"; version="1.1"; sha256="16w5hna0dm89alkch9wf7n8mqqz75scwg0g84qf57bl6sihnp750"; depends=[gmp Rmpfr]; }; FuncMap = derive2 { name="FuncMap"; version="1.0.10"; sha256="0iaay6qz9a2s77xjfpp7wm37y7xwnvmlw6s5k5riccmqzc6dcjs7"; depends=[mvbutils]; }; FuncNN = derive2 { name="FuncNN"; version="1.0"; sha256="0kcr7c54igzi0imp8w9a0mnrqaa2qcls9777scsjz5sbcxdy3if3"; depends=[caret doParallel fda fda_usc flux foreach ggplot2 ggpubr keras Matrix pbapply reshape2 tensorflow]; }; @@ -1752,12 +1765,13 @@ in with self; { Fuzzy_p_value = derive2 { name="Fuzzy.p.value"; version="1.1"; sha256="13h6armh9g57zqxyjqk6mq81jlfqxqrg2sb5p9rrhslka5m01zis"; depends=[FuzzyNumbers]; }; FuzzyAHP = derive2 { name="FuzzyAHP"; version="0.9.5"; sha256="02sx32vlvnr0fzw8rf0f6hiikqn7xp1ibpqzxhxwv8yij2qkiyci"; depends=[MASS]; }; FuzzyLP = derive2 { name="FuzzyLP"; version="0.1-6"; sha256="0k1cqyswhzp31dq91xigirkqhw3imkx68n4vasyvrgq6fm97dl1n"; depends=[FuzzyNumbers ROI ROI_plugin_glpk]; }; + FuzzyM = derive2 { name="FuzzyM"; version="0.1.0"; sha256="12arx4flgykdkynnj341pgpd85k7xh6491bv9v9da63w6rp0kdm6"; depends=[]; }; FuzzyMCDM = derive2 { name="FuzzyMCDM"; version="1.1"; sha256="0ss0s65mm6j0nax4mb9g668d9n9cgl0l016mc3h9hbjxfpqrbkks"; depends=[RankAggreg]; }; FuzzyNumbers = derive2 { name="FuzzyNumbers"; version="0.4-7"; sha256="12xficdsln31rzfziycw6z0912cgrq6mkvz3f1nbli9lzqrypxzl"; depends=[]; }; FuzzyNumbers_Ext_2 = derive2 { name="FuzzyNumbers.Ext.2"; version="3.2"; sha256="0gldq0bg1p1vmrn35prha44d7lyymz0jzshdyp2c5rx433mny7h5"; depends=[FuzzyNumbers]; }; FuzzyQ = derive2 { name="FuzzyQ"; version="0.1.0"; sha256="1camdw7rnzf02nqjlmkr7mqpc38dafq9nw8x7pzwi1lh5xwv5dia"; depends=[cluster]; }; FuzzyR = derive2 { name="FuzzyR"; version="2.3.2"; sha256="0d0zf8diw7m10zfx0r5zg5arhf4a90sva77h6rvfywixldwrnk7s"; depends=[plyr shiny]; }; - FuzzyResampling = derive2 { name="FuzzyResampling"; version="0.4.0"; sha256="1gn4a7vk799n622g2hry5j07hylqk69isr9yplj3af1yl9fpc8ym"; depends=[ttutils]; }; + FuzzyResampling = derive2 { name="FuzzyResampling"; version="0.4.1"; sha256="0dli2r4w8s8wx6i3y31lpy181l1awx8qg8gvnn2yhpcija389zjs"; depends=[ttutils]; }; FuzzySTs = derive2 { name="FuzzySTs"; version="0.2"; sha256="0zs1pyn9apysspxa0glqc96h6npmvvhiqvqpcm0brslz0b6xnilp"; depends=[FuzzyNumbers polynom]; }; FuzzyStatProb = derive2 { name="FuzzyStatProb"; version="2.0.4"; sha256="1jpqb8xczi1d4g306vrwpi02f9h59aki1pgnckvfmiclr306prpb"; depends=[DEoptim FuzzyNumbers MultinomialCI]; }; FuzzyStatTra = derive2 { name="FuzzyStatTra"; version="1.0"; sha256="1ijrlnlmq9d5ahgrpzba6kzkaq1zq59zqdgcizybsf9alsswcm00"; depends=[]; }; @@ -1794,10 +1808,10 @@ in with self; { GCalignR = derive2 { name="GCalignR"; version="1.0.3"; sha256="0fq5jglgbw2cqm4pa7x4lczqjr1w65ddnhzlr2i97skzk0gcdlr5"; depends=[ggplot2 pbapply readr reshape2 stringr tibble]; }; GD = derive2 { name="GD"; version="1.10"; sha256="1sy77yxnwh2n48zahh498v30nl3hivrsmyp0jf3gyyzhxm8z1n5l"; depends=[badger]; }; GDAdata = derive2 { name="GDAdata"; version="0.93"; sha256="13ks97i289rc4i7gpqrifwbj0m9rx8csjhnfg8mad10qmjwz7p8b"; depends=[]; }; - GDAtools = derive2 { name="GDAtools"; version="1.7"; sha256="1fsx2kxilvfvm9nccn1a9ly6kavz9l8np6az2ax9dd00rbvqjcjl"; depends=[FactoMineR GGally ggplot2 ggrepel MASS nleqslv nnet RColorBrewer rlang wdm]; }; + GDAtools = derive2 { name="GDAtools"; version="1.7.2"; sha256="0rqrc9andckh4nf8s87gwkpw2kgc2jsynsvsy1xlnvfp753d4dxp"; depends=[FactoMineR GGally ggplot2 ggrepel MASS nleqslv nnet RColorBrewer rlang wdm]; }; GDELTtools = derive2 { name="GDELTtools"; version="1.5"; sha256="1lhsyf7kd1lnx2dgifmrd89yl95sf9k6ay19dll2p8b9h3vs7hci"; depends=[dplyr plyr TimeWarp]; }; GDINA = derive2 { name="GDINA"; version="2.8.8"; sha256="1slq1npsq8s8aghnrpm6vvc6kxj4svz0kr2x0akblndrcr25wxjr"; depends=[alabama ggplot2 MASS numDeriv Rcpp RcppArmadillo Rsolnp shiny shinydashboard]; }; - GDPuc = derive2 { name="GDPuc"; version="0.5.1"; sha256="1pdhl8mccxb613994f3y59a89rvksi8kb7j2aaf7msnh67rndrrn"; depends=[cli crayon dplyr glue lifecycle magrittr rlang stringr tibble tidyselect]; }; + GDPuc = derive2 { name="GDPuc"; version="0.8.0"; sha256="0nbqhqddz5k3rcwif69pzf7cbkg5ycwvlscx470c9rhzrdffsm16"; depends=[cli crayon dplyr glue lifecycle magrittr rlang tibble tidyselect withr]; }; GE = derive2 { name="GE"; version="0.2.6"; sha256="0vxrw08851n6vfqsvr11746l36n8m4sq5qyhgw1yrcj5g4qwnbf9"; depends=[CGE data_tree DiagrammeR]; }; GEEaSPU = derive2 { name="GEEaSPU"; version="1.0.2"; sha256="02pwjqd94kranc1f69bx9rzk27kchavhvhl9fygjhrr40nwq3pbg"; depends=[gee Rcpp RcppArmadillo]; }; GEEmediate = derive2 { name="GEEmediate"; version="1.1.3"; sha256="1xprkpjp1pkq4ci1n32d3yy80hx3r4xf2j7f6hv7dvsn4cvdp417"; depends=[gee]; }; @@ -1822,8 +1836,9 @@ in with self; { GFE = derive2 { name="GFE"; version="0.1.0"; sha256="0ywrg23z13kp8ggw4wbm4jvr2rvb6kra7ma0mgfj8xzkrxs6vi6m"; depends=[data_table dplyr TeachingSampling]; }; GFGM_copula = derive2 { name="GFGM.copula"; version="1.0.4"; sha256="0cw8ih9dj86cvks0qcpffzjx8lv6qiwvk3f1wri8zashj8lk9am6"; depends=[cmprsk compound_Cox joint_Cox]; }; GFM = derive2 { name="GFM"; version="1.1.0"; sha256="02k1g2rq32ghd3yivjrfz0wjid1kbkraqrb5cmc8640lv7k8l0xr"; depends=[doSNOW MASS]; }; - GFisher = derive2 { name="GFisher"; version="0.1.0"; sha256="1k5ik1q78gy2x0qr15shdr9rry93dh68876l6ifh21ppqw3y1x9j"; depends=[Matrix mvtnorm]; }; + GFisher = derive2 { name="GFisher"; version="0.2.0"; sha256="0ilvl8y118iicq5anzcsm94yz3bq890mb627dxi6z61cqazjbbai"; depends=[Matrix mvtnorm]; }; GGClassification = derive2 { name="GGClassification"; version="0.1"; sha256="03wis5ng2mnfhp33xrag8xbmvjagzr1909a6x94wv7s2spji00rp"; depends=[Rcpp RcppEigen]; }; + GGEBiplots = derive2 { name="GGEBiplots"; version="0.1.3"; sha256="0h7irlmq283bx1hlqyv8bi228kd6xkc7sdw6nq18v3s7b0a9bhcm"; depends=[ggforce ggplot2 scales]; }; GGIR = derive2 { name="GGIR"; version="2.6-0"; sha256="1pzgmly9zda3m9k8dm31qar4md4mknxnpjf389818jih8v9a7ihf"; depends=[activityCounts bitops data_table doParallel foreach GENEAread ineq matlab R_utils Rcpp read_gt3x signal tuneR unisensR zoo]; }; GGMncv = derive2 { name="GGMncv"; version="2.1.1"; sha256="0lih9dyb5aqrawhiy2vhv63b132hhzq6zq0x6rbrhy8kbkldhigr"; depends=[GGally ggplot2 glassoFast MASS mathjaxr network numDeriv pbapply Rcpp RcppArmadillo Rdpack reshape sna]; }; GGMnonreg = derive2 { name="GGMnonreg"; version="1.0.0"; sha256="1bhqk172ddc7xq1hqj1i6q8np6jvmf2xypvd8kp3w1bcsafsbms8"; depends=[bestglm corpcor doParallel foreach GGally GGMncv ggplot2 MASS Matrix network poibin psych Rdpack sna]; }; @@ -1833,7 +1848,6 @@ in with self; { GGUM = derive2 { name="GGUM"; version="0.4-3"; sha256="1r4ijkc5xrlp2sq4jnhcrzzmkzilc4lbz3q5zc0kgcz348hf1a7w"; depends=[abind psych Rdpack viridis xlsx]; }; GGally = derive2 { name="GGally"; version="2.1.2"; sha256="1r98zgh2grn8330cf26r1c20gl131zm778szvn5wj6q6pwv2yd9h"; depends=[dplyr forcats ggplot2 gtable lifecycle plyr progress RColorBrewer reshape rlang scales tidyr]; }; GHS = derive2 { name="GHS"; version="0.1"; sha256="1khjfy62a67r59s2rax9mmnqy5xnnwhbydzhqwwmyspl48mxycdj"; depends=[MASS]; }; - GHap = derive2 { name="GHap"; version="2.0.0"; sha256="0br9civfdlksn5xmyrvz2y0knikcd2i175kddxjdqmiyyayckc8w"; depends=[class data_table e1071 lme4 Matrix]; }; GIC = derive2 { name="GIC"; version="1.0.0"; sha256="0wjrv5rpzcyng0vvpr59l148lxzqnqq4c045fw2x9ynffyb71h99"; depends=[cluster ggplot2 randomForest]; }; GIFTr = derive2 { name="GIFTr"; version="0.1.0"; sha256="101vr2qasky8hnxp5i3lhlnymwzciypqwvhpl6mrr0r0czgpcz2f"; depends=[glue stringr]; }; GIGrvg = derive2 { name="GIGrvg"; version="0.5"; sha256="0mx4n4kf34343yiww80fw5yy0x624xsj71n8fr4dm0a2338pxq8v"; depends=[]; }; @@ -1920,9 +1934,9 @@ in with self; { GSelection = derive2 { name="GSelection"; version="0.1.0"; sha256="052vh1haxlzbh3c5i24nrwphapik1y8ribmh6q4axd447ggc0ff9"; depends=[gdata penalized SAM]; }; GSparO = derive2 { name="GSparO"; version="1.0"; sha256="0xna2crxqwy8fj0s79rxbdcaz9x912rp1vdwqv1557fsnmfv2yf0"; depends=[ggplot2 ThreeWay]; }; GUIDE = derive2 { name="GUIDE"; version="1.2.7"; sha256="0klaczmn3jnlzyh45yaqlc897irjfk467f4w03awmflaiwan3h6v"; depends=[rpanel tkrplot]; }; - GUILDS = derive2 { name="GUILDS"; version="1.3"; sha256="0zl6x0vn93ybps63fqazvd93f2zwdq0rqqrp7d6n5rnamx99mm8d"; depends=[pracma Rcpp]; }; + GUILDS = derive2 { name="GUILDS"; version="1.4.1"; sha256="1j0nhrd2anxmd35v5xz1y3bq8w757qif7h69r5wh0yphrkcxqn4v"; depends=[pracma Rcpp subplex]; }; GUIProfiler = derive2 { name="GUIProfiler"; version="2.0.1"; sha256="10m4d7f2rhw6cmkrnw3jh4iqlkfphf4v7mpfwzw17laq0ncmsx5r"; depends=[graph MASS Nozzle_R1 proftools Rgraphviz rstudioapi]; }; - GUTS = derive2 { name="GUTS"; version="1.2.2"; sha256="1782qqnxp7r2s228cwyx064h4kva859jym7gipq3l913v9n9l45h"; depends=[Rcpp]; }; + GUTS = derive2 { name="GUTS"; version="1.2.3"; sha256="1hmd8i21v81k798la5gdmfah1jqb3v891vxm22s41vvxcz0iw1j0"; depends=[Rcpp]; }; GUniFrac = derive2 { name="GUniFrac"; version="1.4"; sha256="1dya9shxcd1xbwhlk1vqpxag2vnwzca2lddcy1kfn8yjrws8slk8"; depends=[ape dirmult foreach ggplot2 ggrepel lmerTest MASS Matrix matrixStats modeest Rcpp rmutil statmod vegan]; }; GVARX = derive2 { name="GVARX"; version="1.3"; sha256="00iqwkshp1i9338x9khh8hyszad6150qb11jlvky5fm488wcw1y3"; depends=[lmtest lubridate sandwich strucchange tsDyn urca vars xts]; }; GWASExactHW = derive2 { name="GWASExactHW"; version="1.01"; sha256="19qmk8h7kxmn9kzw0x4xns5p3qqz27xkqq4q6zmh4jzizd0fsl78"; depends=[]; }; @@ -1935,7 +1949,7 @@ in with self; { GWLelast = derive2 { name="GWLelast"; version="1.2.2"; sha256="1nm4w5m4ca6npmpvh9nb0cnrbzlyv95nvvhgs3pqcrw4igagm4hj"; depends=[doParallel foreach geosphere glmnet sp spgwr]; }; GWPR_light = derive2 { name="GWPR.light"; version="0.1.1"; sha256="130mndfvxq8mr4ml57pr5xp3wv1b6z99f965pw6fnrgwl4hyl584"; depends=[data_table doParallel dplyr foreach GWmodel iterators lmtest plm sp]; }; GWRM = derive2 { name="GWRM"; version="2.1.0.4"; sha256="13g91bx7b0cf1rnyc6azkvjilvc3kjynb8nclmbh8n3ccm6b0v2r"; depends=[doParallel foreach]; }; - GWSDAT = derive2 { name="GWSDAT"; version="3.1.0"; sha256="1ka461xilsdqc4frh46bicxfnm543k95chnlxghq6j9rjgkx4k0q"; depends=[deldir digest geometry Kendall lattice lubridate MASS Matrix officer raster readxl rhandsontable sf shiny shinycssloaders shinydashboard shinyjs sm sp splancs zoo]; }; + GWSDAT = derive2 { name="GWSDAT"; version="3.1.1"; sha256="0z35ywf33lpbsv0fkdqq5d17nfq1cp0za8pq4lb1ckbkv3w974ls"; depends=[deldir digest geometry Kendall lattice lubridate MASS Matrix officer raster readxl rhandsontable sf shiny shinycssloaders shinydashboard shinyjs sm sp splancs zoo]; }; GWmodel = derive2 { name="GWmodel"; version="2.2-8"; sha256="18jd18mysf7li6c7ywd5cjkwzcvpprc93z8ycndyh0jmyzdr062v"; depends=[FNN maptools Rcpp RcppArmadillo robustbase sp spacetime spatialreg spdep]; }; GWnnegPCA = derive2 { name="GWnnegPCA"; version="0.0.4"; sha256="1yinzlp22z9z5fk9f1nm14i408yfm5kfgkn3pqnh4bkghs569ivg"; depends=[geodist nsprcomp pracma sf sp spData]; }; GWpcor = derive2 { name="GWpcor"; version="0.1.7"; sha256="0q43673pmm2c6kss688fpz10b39y3jn1kblv13p8ky0bk82hmcvi"; depends=[corpcor doParallel dplyr foreach geodist pracma sf sp]; }; @@ -1975,6 +1989,7 @@ in with self; { GeneticSubsetter = derive2 { name="GeneticSubsetter"; version="0.8"; sha256="0bd4snv3dwabc7mknmd2rjmffj67xq535x0bycajhd83d1jhjars"; depends=[]; }; GenoScan = derive2 { name="GenoScan"; version="0.1"; sha256="0p98imfvvz7l94kim3pxypyjs2pbxng4a2nagbafbady82ylr2vi"; depends=[data_table MASS Matrix seqminer SKAT]; }; GenomeAdapt = derive2 { name="GenomeAdapt"; version="1.0.0"; sha256="0jsxqhx62vbsr0hcqk9wrfsg3l3wbnx64pzxx18ps366vg7fxmii"; depends=[gdsfmt qvalue robust SNPRelate]; }; + GenomeAdmixR = derive2 { name="GenomeAdmixR"; version="2.1.7"; sha256="14qnabg1pj8sg2bvd3k4m467bh1q2zfjr0ljxn1ny031sqwis4cy"; depends=[ggplot2 ggridges hierfstat Rcpp RcppArmadillo RcppParallel rlang stringr tibble vcfR]; }; GenomicMating = derive2 { name="GenomicMating"; version="2.0"; sha256="02v1pkarmardf7g8hf2n4jj4cq4707g5lcc7gnwsiyyh7pknd1y6"; depends=[dplyr emoa kohonen LowRankQP magrittr plotly qtl Rcpp RcppArmadillo scatterplot3d SOMbrero]; }; GenomicTools = derive2 { name="GenomicTools"; version="0.2.9.7"; sha256="196shxbrcgiwaa7aav2aipsbj1smrkbhinn44aw9qfvz2x9zdz0m"; depends=[circlize data_table GenomicTools_fileHandler gMWT Rcpp RcppArmadillo snpStats stringr]; }; GenomicTools_fileHandler = derive2 { name="GenomicTools.fileHandler"; version="0.1.5.9"; sha256="09l87wf78bj49cdh7r3x81hn15c4pihxih8l59xxrpgdhp69268c"; depends=[data_table snpStats]; }; @@ -1991,12 +2006,12 @@ in with self; { GerminaR = derive2 { name="GerminaR"; version="2.1.3"; sha256="07hsv8hj9p6qg0d51jfrlv28s3ddfarcnhdv6y073blrcfigi70n"; depends=[agricolae dplyr DT ggplot2 purrr shiny tibble tidyr]; }; GetBCBData = derive2 { name="GetBCBData"; version="0.6"; sha256="0dwkps7396rkk5fsh8ynl1l9465s6zm5mind16a5y2n8swi2ndyk"; depends=[curl dplyr furrr future jsonlite lubridate memoise purrr RCurl readr stringr]; }; GetDFPData = derive2 { name="GetDFPData"; version="1.6"; sha256="1yxf1i5bipz16pbydl6qxlalh2zpdiigbxd1qczbjc1z78bl5727"; depends=[crayon curl dplyr lubridate readr reshape2 stringr tibble xlsx XML]; }; - GetDFPData2 = derive2 { name="GetDFPData2"; version="0.5"; sha256="0grriq5a6n36gbb24cwajrm3971dqvc0ascdgych9wqdj23c3gjr"; depends=[curl dplyr lubridate magrittr memoise purrr RCurl readr rvest shiny stringr tidyr writexl xml2]; }; + GetDFPData2 = derive2 { name="GetDFPData2"; version="0.6.1"; sha256="03wjxy9f0aqbc87awl8j2c70cm9dvchp6dxvc94in8zarvbsi5pf"; depends=[dplyr lubridate magrittr memoise purrr RCurl readr rvest shiny stringr tidyr writexl xml2]; }; GetFREData = derive2 { name="GetFREData"; version="0.7"; sha256="134aw3dginxv0b1bvrfm71qyfg8a01d87f2bnagcsksg7403npia"; depends=[dplyr lubridate magrittr purrr readr rvest stringr XML xml2]; }; GetLattesData = derive2 { name="GetLattesData"; version="1.4"; sha256="129hnhmw8aw81whyj3g7npwgmg4fmvsji9h2xfg78nrp0abjxijv"; depends=[curl dplyr readr stringdist stringr XML]; }; GetQuandlData = derive2 { name="GetQuandlData"; version="0.1.0"; sha256="1g1as4m853ab1wp57rzqm0552g0vm7kxzypibv0xywc85084pnmc"; depends=[dplyr jsonlite memoise purrr readr scales stringr]; }; GetR = derive2 { name="GetR"; version="0.1"; sha256="1b2wirhz4nhvmf863czwb8z8b42ilsyjjrg9rc4nd9b7nz50bmjg"; depends=[party]; }; - GetTDData = derive2 { name="GetTDData"; version="1.4.2"; sha256="1qz75hq1c89riq0jpzjkr9gbk5y7894kb0ydhdyji7kjl1kvgyvx"; depends=[bizdays curl RCurl readxl rvest stringi stringr tidyr XML xml2]; }; + GetTDData = derive2 { name="GetTDData"; version="1.4.4"; sha256="0hgnwja6z8x9faj8g2kyvdhj5j8qxpgy39863hhqyil71vxmlcrw"; depends=[bizdays curl dplyr readxl rvest stringr tidyr xml2]; }; GetoptLong = derive2 { name="GetoptLong"; version="1.0.5"; sha256="00fpm6nd3kqa2ikasxa62jzywi46fvvmx1mdavcp5yrxxn37j8wc"; depends=[crayon GlobalOptions rjson]; }; Ghat = derive2 { name="Ghat"; version="0.1.0"; sha256="1w5agphnbngc0ldb3gbgh4b8ww956lf31bfyxw2zp56crx4akcxf"; depends=[rrBLUP]; }; Ghost = derive2 { name="Ghost"; version="0.1.0"; sha256="0anrb1n3f3jnq2p0dgqzw5a0gby2slafv2bybgy5gm3f9fsj831w"; depends=[R6]; }; @@ -2015,7 +2030,7 @@ in with self; { GlobalDeviance = derive2 { name="GlobalDeviance"; version="0.4"; sha256="0s318arq2kmn8fh0rd5hd1h9wmadr9q8yw8ramsjzvdc41bxqq1a"; depends=[snowfall]; }; GlobalFit = derive2 { name="GlobalFit"; version="1.2"; sha256="01s51nxcsl8xxn6khbv5jsvpwblwf0iamvr477a1rraqqqj94zx0"; depends=[sybil]; }; GlobalOptions = derive2 { name="GlobalOptions"; version="0.1.2"; sha256="0gkm77w6db9ajyncy1xdcivplap06a51zi99m009kylccschd2a7"; depends=[]; }; - GmAMisc = derive2 { name="GmAMisc"; version="1.2.0"; sha256="1rdypld7viski65kqh5m6jhmxgxx8mc3dn8kvy710h5wsii3nn04"; depends=[caTools classInt cluster coin corrplot DescTools dismo ggplot2 ggrepel gridExtra Hmisc InPosition kimisc lsr maptools plyr pROC raster RcmdrMisc rgdal rgeos sp spatstat spatstat_core spatstat_geom spatstat_linnet]; }; + GmAMisc = derive2 { name="GmAMisc"; version="1.2.1"; sha256="0rvdphdgk1bdfamwf6spy5k9qa5ws92mvf3q3dlhn6qfazp7j4hr"; depends=[caTools classInt cluster coin corrplot DescTools dismo ggplot2 ggrepel gridExtra Hmisc InPosition kimisc lsr maptools plyr pROC raster RcmdrMisc rgdal rgeos sp spatstat_core spatstat_geom spatstat_random]; }; Gmedian = derive2 { name="Gmedian"; version="1.2.6"; sha256="1kb60f9r9lq5blv07jjln1j5fq1whjcc54zn7bglpp4hl4f74j5d"; depends=[Rcpp RcppArmadillo robustbase RSpectra]; }; Gmisc = derive2 { name="Gmisc"; version="3.0.0"; sha256="051bcp15xpxpdq2r2d29wgm49c0n5r0vikwgzciclxs64j1a57ip"; depends=[abind checkmate forestplot glue Hmisc htmlTable knitr lattice lubridate magrittr Rcpp rlang rmarkdown stringr XML yaml]; }; GoFKernel = derive2 { name="GoFKernel"; version="2.1-1"; sha256="0xygsdmggl35fafyp431mkwalwixw2r3f32qll1pf72dfwd8y8d3"; depends=[KernSmooth]; }; @@ -2059,8 +2074,9 @@ in with self; { HBglm = derive2 { name="HBglm"; version="0.1"; sha256="1sral7lh5qw5mn31n8459pk52frgw1bjq0z5ckpsnbc4qf3xxcjn"; depends=[bayesm Formula MfUSampler sns]; }; HCD = derive2 { name="HCD"; version="0.1"; sha256="158szwhpxwj2dj7sibyh8l92dk9cmy6acapmk8wf5hmfybdpgbsh"; depends=[data_table data_tree dendextend irlba Matrix randnet RSpectra stringr]; }; HCR = derive2 { name="HCR"; version="0.1.1"; sha256="14s46dyw3ifp3pwwlcwbbl47i6hy2whjj1n65i28am5a33nycgha"; depends=[data_table]; }; + HCTDesign = derive2 { name="HCTDesign"; version="0.7.0"; sha256="0qg6c8sndyk5jgihfdcgk4syp7rwcd8zkb5ndx3rfzdmyfcyrl31"; depends=[diversitree flexsurv mvtnorm Rdpack survival]; }; HCTR = derive2 { name="HCTR"; version="0.1.1"; sha256="1hg8mpallwxpmamk6q8x87w5hlqqwvbahfw5zmr9pisiagbwcsay"; depends=[glmnet harmonicmeanp MASS ncvreg Rdpack]; }; - HCV = derive2 { name="HCV"; version="1.1.0"; sha256="09jmrwgzwih08cwjk1rgmn4ssraq4a41fk9fq1qjbjgbsbkkihj8"; depends=[BLSM cluster geometry M3C MASS Matrix rgeos sp]; }; + HCV = derive2 { name="HCV"; version="1.2.0"; sha256="00ry36w2v4h3vkf2jq3djcma23xflr7fx7icy2vzwk9ffnmzvpxd"; depends=[BLSM cluster geometry M3C MASS Matrix rgeos sp]; }; HCmodelSets = derive2 { name="HCmodelSets"; version="1.1.2"; sha256="05w742g89r0hr90awwjqlszib2jjfly52l9c7ag3n22vg4d1ixw1"; depends=[ggplot2 mvtnorm survival]; }; HDBRR = derive2 { name="HDBRR"; version="1.1.3"; sha256="1awz9s7g5fcy2anrq3fmyjcvi3kr2b3vmky63nv964821b8x9vh1"; depends=[bigstatsr MASS numDeriv]; }; HDCI = derive2 { name="HDCI"; version="1.0-2"; sha256="0wxbv54kbygymhh4r7052vnbj603c1kya01ykvmqzzkjyyfzidkz"; depends=[doParallel foreach glmnet iterators lattice Matrix mvtnorm slam]; }; @@ -2079,7 +2095,7 @@ in with self; { HDclust = derive2 { name="HDclust"; version="1.0.3"; sha256="18l4qp261gj3kscfxs3s03kmb9y5ml31vnpgpm1iy125bks4mr2y"; depends=[Rcpp RcppProgress Rtsne]; }; HDcpDetect = derive2 { name="HDcpDetect"; version="0.1.0"; sha256="0ai35d9df5pmva52sb1rr20f11h0mbal6d179g865b7w6n90kfr1"; depends=[]; }; HDiR = derive2 { name="HDiR"; version="1.1.1"; sha256="1j9y1sc642ghz0rfdsrsg46c56mgdg9444a4b5zv2ami9b4zs2an"; depends=[circular Directional movMF NPCirc rgl]; }; - HDoutliers = derive2 { name="HDoutliers"; version="1.0.3"; sha256="167g72b23jpjfhnz2faxia2lma328gvqkrlnz6xizzq7vb7cmb18"; depends=[FactoMineR FNN mclust]; }; + HDoutliers = derive2 { name="HDoutliers"; version="1.0.4"; sha256="0vc3g36cghs2ln8a3pb344b3vw1jpz9r8ld77ldd898vg9rhkq2m"; depends=[FactoMineR FNN mclust]; }; HDtest = derive2 { name="HDtest"; version="2.1"; sha256="1c9x4s59762sp7drbm5h1xv22kpifq7p0x3dkrfcd0ficbbma5v8"; depends=[checkmate clime doParallel expm fastclime foreach MASS mvtnorm]; }; HDtweedie = derive2 { name="HDtweedie"; version="1.1"; sha256="14awd7sws0464f68f5xwnv1xvr0xflvx2z2zzcfj1csvk3af0zzj"; depends=[]; }; HEDA = derive2 { name="HEDA"; version="0.1.5"; sha256="0arya76isiaxmgmhl7q93vmga9apmbkq3scgz7zhgnrkd8mkh0i1"; depends=[dplyr ggplot2 lubridate rlang zoo]; }; @@ -2144,7 +2160,7 @@ in with self; { HazardDiff = derive2 { name="HazardDiff"; version="0.1.0"; sha256="048lvhb4545a487kyknf5b5v8q3a9nsipbh0ii2k3pcc5vfql1h4"; depends=[ahaz Rdpack rootSolve survival]; }; HeckmanEM = derive2 { name="HeckmanEM"; version="0.1.2"; sha256="1q9sad19ccq30ggvcj1byhka4dwa94k6z31ig56vi3031nx2424n"; depends=[MomTrunc mvtnorm PerformanceAnalytics sampleSelection]; }; HellCor = derive2 { name="HellCor"; version="1.3"; sha256="1bzc2ipm7vw7s849d43lcs0xrk2rs67h223dn9kahqg152mmknza"; depends=[energy FNN orthopolynom]; }; - HelpersMG = derive2 { name="HelpersMG"; version="5.0"; sha256="03ad9p0z5ggsv7s2yzid4jrxgqiwrdm588snwgny91vc0n7xzixx"; depends=[coda lme4 MASS Matrix]; }; + HelpersMG = derive2 { name="HelpersMG"; version="5.1"; sha256="0wdqfg3vlia2mx8vpm406pcb9l4aa9q94var912k8lsv0al7d30i"; depends=[coda lme4 MASS Matrix]; }; HeritSeq = derive2 { name="HeritSeq"; version="1.0.2"; sha256="0jzf3pq43lllxvvmf0rqzxz9fx6931mgb0ipminlw1iakz8wa6w3"; depends=[cplm DESeq2 lme4 MASS pbapply SummarizedExperiment tweedie]; }; HeterFunctionalData = derive2 { name="HeterFunctionalData"; version="0.1.0"; sha256="0qrfmxwrxn0rd2ncy3afhraf7m0010nf9739jkj19h1j5vksi9n1"; depends=[]; }; HeteroGGM = derive2 { name="HeteroGGM"; version="0.1.0"; sha256="0cfzqhbnsy2254m1n6vbpcxlmiqw7cs26v81f5wyawlyyvdydmxi"; depends=[igraph MASS Matrix]; }; @@ -2175,12 +2191,11 @@ in with self; { HuraultMisc = derive2 { name="HuraultMisc"; version="1.1.1"; sha256="0bi1y7icrg0f4n9ah9dsrijnfr39bqg3799rz4hccd1b061f0rvj"; depends=[cowplot dplyr ggplot2 HDInterval Hmisc magrittr reshape2 rstan tidyr]; }; HyPhy = derive2 { name="HyPhy"; version="1.0"; sha256="0994ymv7sswbp8qw3pay34s926cflw2hq2gnchw7rknybvlsrinq"; depends=[ape R_utils]; }; HyRiM = derive2 { name="HyRiM"; version="2.0.1"; sha256="09njf2gscn13x5mfd7g76cam9bzbibcnc383gb8h0kks7x16d3p9"; depends=[compare grImport2 orthopolynom purrr Rglpk]; }; - HybridMC = derive2 { name="HybridMC"; version="0.2"; sha256="1wgzfyk0scwq9s2sdmc91fj7r4d7zlgwgnj6mdiia8w88ja8kzqy"; depends=[coda]; }; HydeNet = derive2 { name="HydeNet"; version="0.10.11"; sha256="1qi87k2drizqba1nz8psh697ks8ai8xz492kzsrs76xlxpbk1i9k"; depends=[checkmate DiagrammeR dplyr graph magrittr nnet pixiedust plyr rjags stringr]; }; HydroCode = derive2 { name="HydroCode"; version="1.0.2"; sha256="1igshik28xcxrdg116vs9s2yfbz5fik9xvlgfkgai3w9qj0x1h5q"; depends=[sp]; }; HydroMe = derive2 { name="HydroMe"; version="2.0-1"; sha256="1pzf3z3f2xqmj7ixdg01k8552l4vz7yaf2mb53q59ihfhlbqchni"; depends=[]; }; HyperG = derive2 { name="HyperG"; version="1.0.0"; sha256="0w84ph0vd03i22s8g52jf2w96yd80ynbh6x0p88apg92jdsapcrc"; depends=[gtools igraph Matrix mclust proxy RSpectra]; }; - HyperbolicDist = derive2 { name="HyperbolicDist"; version="0.6-2"; sha256="1wgqbx9ascyk6gw1dmvfz6hljvbh49gb9shr9qgf22qbq83waiva"; depends=[]; }; + HyperbolicDist = derive2 { name="HyperbolicDist"; version="0.6-4"; sha256="0xsgy995z79qdamwdgs335r8zr2bk5cyw4wijqyvgwx3pqmwvvmr"; depends=[]; }; HypergeoMat = derive2 { name="HypergeoMat"; version="4.0.1"; sha256="0l000hanjlyz76vvvp7sh6d03m3mj7wld4ph9dzhf1z9b4x9i2bz"; depends=[EigenR gsl JuliaConnectoR Rcpp RcppEigen]; }; IASD = derive2 { name="IASD"; version="1.1"; sha256="1slhd42k639mbyxccl7n69p7ng2qx6pqag8wz3kdwn479spkavzn"; depends=[]; }; IAT = derive2 { name="IAT"; version="0.3"; sha256="110rn2q09gspfd4msyh30dllxdxdraffkr18h1nm72brzhmx9cfi"; depends=[dplyr ggplot2 lazyeval]; }; @@ -2225,14 +2240,16 @@ in with self; { ICglm = derive2 { name="ICglm"; version="0.1.0"; sha256="1dmnz6sf311xsvyg8dh082pxgzizm701cf1ml0xg4s9kls3fd2i8"; depends=[Matrix]; }; ICsurv = derive2 { name="ICsurv"; version="1.0"; sha256="1mbndpy3x5731c9y955wscy76jrxlgv33bf6ldqp65cwyvdgxl86"; depends=[MASS matrixcalc]; }; ICtest = derive2 { name="ICtest"; version="0.3-4"; sha256="130n25xxq0iav5y2anyhjjkpvfs438qxjgrbil7yzpaaifhxrmi2"; depends=[GGally ggplot2 ICS ICSNP JADE png Rcpp RcppArmadillo survey xts zoo]; }; - ICvectorfields = derive2 { name="ICvectorfields"; version="0.1.1"; sha256="15djyammyss0vqvknkd30xxd2pwmi4jzrb2x711sxhz9yx8arhqf"; depends=[fftwtools Rcpp terra]; }; + ICvectorfields = derive2 { name="ICvectorfields"; version="0.1.2"; sha256="0h10ijh00ahk2aawg090sspdyxzln8cwzvrfqyi45p19sbx93503"; depends=[fftwtools Rcpp terra]; }; IDCard = derive2 { name="IDCard"; version="0.3.0"; sha256="06b5zqmgh4clni3mv6ab2a52r4z34isbz0hd1i61793gps9fkc0y"; depends=[stringr]; }; + IDConverter = derive2 { name="IDConverter"; version="0.2.0"; sha256="1w0j833wxmfc3sy2jwnvz15bvlgy0zss9m9s7md1jkkvhjbxcvnk"; depends=[data_table httr]; }; IDE = derive2 { name="IDE"; version="0.3.0"; sha256="1m1y7gd8i14kl54qxhjy7bnf2md5vs7bb73k7k92nizv941qn0mn"; depends=[DEoptim dplyr FRK ggplot2 Matrix sp spacetime sparseinv tidyr]; }; - IDF = derive2 { name="IDF"; version="2.1.0"; sha256="01hfnjiq0a9xmg605kyvvx44pm1fm1h1li6gkp0yw3ryz15r654n"; depends=[evd fastmatch ismev pbapply RcppRoll]; }; + IDF = derive2 { name="IDF"; version="2.1.1"; sha256="045z32zv18hnzddhqk3r7dgql6lavkrjwgsn9lwcjhv1v8j3x6cw"; depends=[evd fastmatch ismev pbapply RcppRoll]; }; IDPSurvival = derive2 { name="IDPSurvival"; version="1.2"; sha256="0hifs8vw3rxlb5vlxs1433pcv2dh7p0mxpgb2n03d98f20vkdwfw"; depends=[gtools Rsolnp survival]; }; IDPmisc = derive2 { name="IDPmisc"; version="1.1.20"; sha256="0zy6mxqa8arq0vvhsdcifzm3085c23rnwa1n36fhircph1xwvfdw"; depends=[lattice]; }; IDSA = derive2 { name="IDSA"; version="2.1"; sha256="0ld2359ksnw9jrjicnqikh5r321mfy2i7vzlhh9phm60k0qf5j98"; depends=[GD ggplot2 kableExtra reshape2]; }; IDSL_IPA = derive2 { name="IDSL.IPA"; version="1.3"; sha256="1lmmr43cblxi0652hi6nk08c8yv3s6m1aqyysmk4xh2mhnr8hqpb"; depends=[BiocManager doSNOW foreach ggplot2 gridExtra mzR png Rcpp readxl]; }; + IDSL_MXP = derive2 { name="IDSL.MXP"; version="1.0"; sha256="09r4s7zkc25cfg0dsli5igv9cpywifgqiysspfs5bah4abv4v7f1"; depends=[base64enc xml2]; }; IDSL_UFA = derive2 { name="IDSL.UFA"; version="1.0"; sha256="0digl6s13mnknihpg5zy0b2ak9rmwz40ya9bym10bsam86rx3r93"; depends=[BiocManager doParallel doSNOW foreach GA ggplot2 gridExtra IDSL_IPA mzR Rcpp readxl stringi]; }; IDSL_UFAx = derive2 { name="IDSL.UFAx"; version="1.0.1"; sha256="11jc1np6b22qr33rilvb557c0aphvb07601a3hw9zmf8s31xs2dg"; depends=[BiocManager doSNOW foreach IDSL_IPA IDSL_UFA mzR Rcpp RcppAlgos readxl stringr]; }; IDSpatialStats = derive2 { name="IDSpatialStats"; version="0.3.12"; sha256="0gkicafnzq8aq9bmbbr9n868sh91dwkhs1dk4wry5vkbfaawfxis"; depends=[doParallel foreach igraph spatstat_core spatstat_geom]; }; @@ -2246,11 +2263,11 @@ in with self; { IGG = derive2 { name="IGG"; version="1.0"; sha256="1cibb9z18xc1zx1813lk14n6p5am84hm7w0hkrsif4j3p89lrwif"; depends=[GIGrvg glmnet MASS Matrix pscl]; }; IGP = derive2 { name="IGP"; version="0.2.0"; sha256="1hsyl6cjm84w4f4v0gw4hi5y483r8v78xb3k3h1ixix9ymjqr8y5"; depends=[R6 reticulate]; }; IGST = derive2 { name="IGST"; version="0.1.0"; sha256="12ycrfsgwakaj3k39k1j4ky58wr7a2ibyz6j9cznvjjv6cgz9zg5"; depends=[BootMRMR e1071]; }; + IGoRRR = derive2 { name="IGoRRR"; version="0.3.1"; sha256="0vbg3rm0l1fx9s0waj9ginqgyyr781nmj38m78mhxsvbhccqdjr0"; depends=[clipr dplyr feather fst fuzzyjoin ggformula glue haven Hmisc htmltools jsonlite lubridate magrittr mapsf purrr readODS readxl rhandsontable rio shiny shinydashboard shinyFiles shinyWidgets skimr sortable stringr tables tibble tidyr zoo]; }; IHSEP = derive2 { name="IHSEP"; version="0.2"; sha256="1qb6mn9bsd69pifmphywmj6j71v14wklydw23pbj5980c5hrlwsj"; depends=[lpint Rcpp]; }; IIVpredictor = derive2 { name="IIVpredictor"; version="0.1.0"; sha256="15361j8b60jj3bh8cjxs39d9bir1aywy9bd254s5w94cakhy0ld5"; depends=[lavaan R2jags]; }; ILS = derive2 { name="ILS"; version="0.2"; sha256="0lj3ripkaq6jn00lpxjihjhm8g1gbkppmb1y9kkrymphg80k1by7"; depends=[depthTools fda_usc lattice MASS multcomp]; }; ILSE = derive2 { name="ILSE"; version="1.1.7"; sha256="0jx0f7lk18k0wsypi4ynq1zqbb9hsmcmf0chxyrpqkadfqb6mgwr"; depends=[pbapply Rcpp RcppArmadillo]; }; - IMAGE = derive2 { name="IMAGE"; version="1.0"; sha256="0xgrja7qhklcmbm0zz5xg94gw5kl05nk3v77l7vxq2d5sk0435g3"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo]; }; IMD = derive2 { name="IMD"; version="1.0.2"; sha256="13l15gdwib09gs5bqga1hr5z9vym0f9jiki4il22mrzkhw34y2j8"; depends=[devtools dplyr Hmisc httr janitor readODS readr readxl rlang tibble tidyr]; }; IMEC = derive2 { name="IMEC"; version="0.2.0"; sha256="1k85pr6s6lysn53n59i8rcdhyg7r3il5avbckvvz43p6lh0fgxpy"; depends=[igraph IsingSampler qgraph]; }; IMFData = derive2 { name="IMFData"; version="0.2.0"; sha256="1mlxpsbyvh1zi8ivdblbd58zfv5hflnknbasz5z8xk9911czrn6p"; depends=[httr jsonlite plyr]; }; @@ -2266,7 +2283,7 @@ in with self; { INQC = derive2 { name="INQC"; version="2.0.5"; sha256="1gz7gyq5n2bmh18yrg29nz8kmdc0b35chwqxr6y2sggdm8j28akd"; depends=[evd gdata suncalc]; }; INSPIRE = derive2 { name="INSPIRE"; version="1.5"; sha256="0938l50yxnb5q628mp874ayx9ybvcjddis20y1hzm5cmlsg0hqhg"; depends=[missMDA]; }; INTRIGUE = derive2 { name="INTRIGUE"; version="0.1.0"; sha256="1l1vfl0m4iqniwp4bp1bfjpqhwahg341fpyxhryr0j8lypqaw7si"; depends=[dplyr rlist SQUAREM]; }; - IOHanalyzer = derive2 { name="IOHanalyzer"; version="0.1.6.1"; sha256="0iipdksj9bxcf3k2acm6ay1sjk9hcp860kqf7dflvcmf3i271rfc"; depends=[bsplus colorRamps colorspace colourpicker data_table dplyr DT ggplot2 httr kableExtra knitr magrittr markdown plotly RColorBrewer Rcpp reshape2 shiny shinydashboard shinyjs stringi]; }; + IOHanalyzer = derive2 { name="IOHanalyzer"; version="0.1.6.3"; sha256="1y8qvjm9mrdfxzgxyn5w8798gay0mf4l5lw7s845bcglpyr91q6p"; depends=[colorRamps colorspace data_table dplyr ggplot2 httr knitr magrittr plotly RColorBrewer Rcpp reshape2 shiny stringi]; }; IOHexperimenter = derive2 { name="IOHexperimenter"; version="0.1.4"; sha256="0aacliznncl488rjsnx02pfj1mchhcyb36v816g959ll38pvc6bk"; depends=[assertthat BH magrittr Rcpp]; }; IPCAPS = derive2 { name="IPCAPS"; version="1.1.8"; sha256="17ifkgjjnvvcc8dp065ng4ad9lr85lcdcb401vi84yy8m2llbypw"; depends=[apcluster expm fpc KRIS LPCM MASS Matrix Rmixmod]; }; IPCWK = derive2 { name="IPCWK"; version="1.0"; sha256="0hah1xl6zli0346jh57rjc5x8vynhaysj0l481rmvznsghv6im23"; depends=[MASS survival]; }; @@ -2274,7 +2291,6 @@ in with self; { IPDfromKM = derive2 { name="IPDfromKM"; version="0.1.10"; sha256="1pqi6cshiha4gnra25fgpggyi42mn2hg25s9m9mh091rn5km44q0"; depends=[dplyr ggplot2 gridExtra readbitmap survival]; }; IPEC = derive2 { name="IPEC"; version="0.1.3"; sha256="0h1b9h33zxx23rj8c9790nsqykwhznavy8hfkgv9gx7nphrsy5ma"; depends=[MASS numDeriv]; }; IPLGP = derive2 { name="IPLGP"; version="2.0.0"; sha256="0vzppfc42p51a7rjg6w02w45kh0rymqjfgb6979g9pm35dpppbgz"; depends=[ggplot2 sommer]; }; - IPMRF = derive2 { name="IPMRF"; version="1.2"; sha256="1zvwwhiy0p134zvm5ldc92pdd1ap72bhbrlf02rz9m2hlsxmwy67"; depends=[gbm party randomForest]; }; IPMbook = derive2 { name="IPMbook"; version="0.1.3"; sha256="0wjzp3l7w4cp0g6c1q84l18pkb0sjjnspidxdv32pn7rqj7wsmcf"; depends=[abind]; }; IPPP = derive2 { name="IPPP"; version="1.1"; sha256="19ccs25fd56ns7ssi51w2jzjd4d57vyimwmfvf27mmigb537bd5y"; depends=[]; }; IPV = derive2 { name="IPV"; version="0.2.0"; sha256="0qkh4c865rlzzcj9j8bdwj9y57s8mahry7lxg2q61dqzb51nlvsn"; depends=[ggforce ggplot2 lavaan Matrix reshape2 stringr]; }; @@ -2284,7 +2300,6 @@ in with self; { IRCcheck = derive2 { name="IRCcheck"; version="1.0.0"; sha256="035sx36qf5hdnc51h8251qwxfm30r8h2v2qs2x161ip4cqghw019"; depends=[corpcor GGMncv glmnet MASS Rdpack]; }; IRISMustangMetrics = derive2 { name="IRISMustangMetrics"; version="2.4.4"; sha256="0pnqmzzzbyqdg5hy4jjmlw38cpi81gsphfs4bqwbhmx77dp7ib06"; depends=[dplyr IRISSeismic pracma RCurl seismicRoll signal stringr XML]; }; IRISSeismic = derive2 { name="IRISSeismic"; version="1.6.3"; sha256="0krq0xxxwl59cp8mn82f9xlincvl6l8r6cq5axfmk99nrzcfdy5g"; depends=[pracma RCurl seismicRoll signal stringr XML]; }; - IRSF = derive2 { name="IRSF"; version="1.0.3"; sha256="1cq196z2i4by7dfij6w849a49d8dzzcdk5a68nxvmvwq3xskywam"; depends=[abind randomForestSRC survival]; }; IRTBEMM = derive2 { name="IRTBEMM"; version="1.0.7"; sha256="09siwm2shjb8hhk64r66fspzykzr2r0m011pv8qcl9k7g040mxpi"; depends=[]; }; IRTShiny = derive2 { name="IRTShiny"; version="1.2"; sha256="094ax94y6k5z4vlxfla2w19f57q0z32nwwd5npjbgmnkhvfhhl9v"; depends=[beeswarm CTT ltm psych shiny shinyAce]; }; IRdisplay = derive2 { name="IRdisplay"; version="1.1"; sha256="0awdiv4rr93y8jb1d64sm1iy37ywyniqm7w98yv6qm0zz47h7sw3"; depends=[repr]; }; @@ -2308,12 +2323,12 @@ in with self; { IUPS = derive2 { name="IUPS"; version="1.0"; sha256="01pv03ink668fi2vxqybli0kgva13gxhqfdxkwz6qk5rnpzwvf5w"; depends=[boot Matching R2jags]; }; IVYplot = derive2 { name="IVYplot"; version="0.1.0"; sha256="1v739xlim3mcw09cyp4z3cbb25ipkpwm9h378fwy2ycp8lmq32gy"; depends=[plyr]; }; Iboot = derive2 { name="Iboot"; version="0.1-1"; sha256="1fahh86kgv2axj2qg14n87v888sc0kb567s6zr3fh5zv361phwkq"; depends=[]; }; - IceSat2R = derive2 { name="IceSat2R"; version="1.0.0"; sha256="196wwzf2sd2xh21grbqgjrq5sn7g4b6bp7i4v64p7ddqz7v8l7h6"; depends=[data_table doParallel foreach glue httr leafgl leaflet leaflet_extras leafsync lwgeom magrittr miniUI rnaturalearth sf shiny units]; }; + IceSat2R = derive2 { name="IceSat2R"; version="1.0.1"; sha256="0xmx6schcg03p1c7v86m8r7yh78gc5dgiqa1v1d3s030r787ds6a"; depends=[data_table doParallel foreach glue httr leafgl leaflet leaflet_extras leafsync lubridate lwgeom magrittr miniUI rnaturalearth rvest sf shiny units]; }; IgAScores = derive2 { name="IgAScores"; version="0.1.2"; sha256="0ckqjbn0xc894dc23gbaqzr6z6rl5h0k8gc5gjhbhwvrc2zlyfsp"; depends=[]; }; ImaginR = derive2 { name="ImaginR"; version="0.1.7"; sha256="12ypfrqw6xym84i1axd3h0qd2md96rc0glas3rgzpdhdyw4lbfmn"; depends=[imager jpeg]; }; Imap = derive2 { name="Imap"; version="1.32"; sha256="0b4w0mw9ljw6zxwvi0qzb08yq9n169lzgkdcwizrd07x9k9xjxs7"; depends=[]; }; Immigrate = derive2 { name="Immigrate"; version="0.2.1"; sha256="0pnnvv63kkg7pgyblb1vlx54c6169n40fn58aypdy5xcnknabvxn"; depends=[pROC Rcpp]; }; - ImpactEffectsize = derive2 { name="ImpactEffectsize"; version="0.6.1"; sha256="12pl4kif6s8jllncm3r5133vrknq98h8awbskq4sh55p1ldaldfq"; depends=[caTools matrixStats parallelDist Rcpp]; }; + ImpactEffectsize = derive2 { name="ImpactEffectsize"; version="0.6.2"; sha256="06dywikscwvigcw50h9yd3fjf3h25ymkxphwy8r6n3v2nl9iba3m"; depends=[caTools matrixStats parallelDist Rcpp]; }; ImportExport = derive2 { name="ImportExport"; version="1.3"; sha256="07i7p9xha1f23r07lw87ak13hd4wavdvwh8vb8sg2gyvnpa5njwp"; depends=[chron gdata haven Hmisc readxl RODBC writexl]; }; ImputeRobust = derive2 { name="ImputeRobust"; version="1.3-1"; sha256="1zvwlpffpm4gqysz57clf8jkqr72yjbzx90pdy95la51m0b6cdbd"; depends=[extremevalues gamlss gamlss_dist lattice mice purrr]; }; InDisc = derive2 { name="InDisc"; version="1.1.0"; sha256="0halx4m503b9d4vk5y0qmx6qyvc6lwjr4ys4xdcj6bnzv8wi8ymw"; depends=[matrixStats psych]; }; @@ -2360,7 +2375,7 @@ in with self; { Inventorymodel = derive2 { name="Inventorymodel"; version="1.1.0"; sha256="1l87xghdksgmb2k3a8j382p7ffi2pma38a6pn31sfjsa6bgmrdnk"; depends=[e1071 GameTheoryAllocation]; }; Irescale = derive2 { name="Irescale"; version="2.3.0"; sha256="037bzli0zwlfbf5xmllqg2pi0shs33ggrnw69kzyw2sf780y3hs2"; depends=[e1071 fBasics ggplot2 imager Rdpack reshape2 sp]; }; IrishDirectorates = derive2 { name="IrishDirectorates"; version="1.4"; sha256="1mwjrmqga7f0p5w2m4f0i6mb68jimx6791pz03r8iqj3yx0vzkh0"; depends=[Rcpp RcppArmadillo]; }; - IrregLong = derive2 { name="IrregLong"; version="0.3.3"; sha256="1qmpim7r5wzifr73bb261xhpsxz93n5h70yc883wiaikjg031abb"; depends=[data_table geepack survival]; }; + IrregLong = derive2 { name="IrregLong"; version="0.3.4"; sha256="0gavbvmn9m1kamlyg9sb5zxpwq9gc32xcz14m6aqqrdps2xyv3kn"; depends=[data_table geepack survival]; }; Iscores = derive2 { name="Iscores"; version="1.1.0"; sha256="01xv3003yni984dyn0iwnn3kkl05ij8j21cxbmj9jl9zbw44pzi1"; depends=[kernlab ranger]; }; IsingFit = derive2 { name="IsingFit"; version="0.3.1"; sha256="1prdzzp15klkdy72379bjksdgxr15nk16pqm35w95341cddxchc7"; depends=[glmnet Matrix qgraph]; }; IsingSampler = derive2 { name="IsingSampler"; version="0.2.1"; sha256="1cs4vk53b5fy6kywvycfjf62571yx92nvgp5i8hlvms1362ir7gv"; depends=[dplyr magrittr nnet plyr Rcpp]; }; @@ -2370,11 +2385,11 @@ in with self; { IsoCorr = derive2 { name="IsoCorr"; version="1.0"; sha256="0rhbclbpfd9d0dawbwwprlzx2j9k59gsmrb11yabiv5305b7vpx8"; depends=[]; }; IsoGene = derive2 { name="IsoGene"; version="1.0-24"; sha256="0flm0mszankvl3aizwsazyhvz2xkr4gfqiqywpc0r1swqj19610r"; depends=[affy Biobase ff Iso xtable]; }; IsoSpecR = derive2 { name="IsoSpecR"; version="2.1.3"; sha256="0cy9y3lh20xxj9sah8s2zrwnbzk39s5xmscj4mskvn897bmlksh6"; depends=[Rcpp]; }; - IsoplotR = derive2 { name="IsoplotR"; version="4.2"; sha256="18yc6d09850fjrgxdmnfgm572czyx0z40smhlix81pwn2pm8vq92"; depends=[MASS]; }; - IsoplotRgui = derive2 { name="IsoplotRgui"; version="4.2"; sha256="0l30bv9nzamh6aj2b5497hnn298lcim5nhp3isqnm0r1wpnpjk71"; depends=[httpuv IsoplotR jsonlite later]; }; + IsoplotR = derive2 { name="IsoplotR"; version="4.3"; sha256="0m77ffpwhnhpig8fli36jmwj728s2866wyjmdl8a2jd9lnygw4vw"; depends=[MASS]; }; + IsoplotRgui = derive2 { name="IsoplotRgui"; version="4.3"; sha256="1yql59cvljh63k5lmgxajbr8slbk4nsi140s5hmr9q1qfk90bncj"; depends=[httpuv IsoplotR jsonlite later]; }; IsoriX = derive2 { name="IsoriX"; version="0.8.2"; sha256="1yk2xlz658c1kvm3kb89qmacy5g9qnzjawi2pk5xkn7g9v214adr"; depends=[lattice latticeExtra numDeriv raster rasterVis sp spaMM viridisLite]; }; IsotopeR = derive2 { name="IsotopeR"; version="0.5.4"; sha256="0xgha5alh5y5qfz00rl73q4xlamnmrwij7kckljmy6zgrlrdnl6x"; depends=[colorspace ellipse fgui plotrix runjags]; }; - IxPopDyMod = derive2 { name="IxPopDyMod"; version="0.1.0"; sha256="12b4ffkq8788yhj2xs6fsm8dw0607ifj3yy1lylcy3z2nn2bzap7"; depends=[dplyr ggplot2 igraph magrittr readr rlang stringr tibble tidyr yaml]; }; + IxPopDyMod = derive2 { name="IxPopDyMod"; version="0.2.0"; sha256="0qnxf9a0d9lmvna5rzmddp5gsq9scpk9aw0kamhbmrxbxaxm4q9l"; depends=[dplyr ggplot2 igraph magrittr readr rlang stringr tibble tidyr yaml]; }; JADE = derive2 { name="JADE"; version="2.0-3"; sha256="1fj2wawx5ac1fvlp28naqha0i17f1sb47j2qqzgccvx17ycqmmjn"; depends=[clue]; }; JASPAR = derive2 { name="JASPAR"; version="0.0.1"; sha256="0wiyn7cz45hwy9zkvacx28zdrg78q6715cg4r9xgcb39q25s0dcy"; depends=[gtools]; }; JBrowseR = derive2 { name="JBrowseR"; version="0.9.0"; sha256="0wwcz5dzjmss2rdqdfxrxbaj01f9avh7h5clzl9aqvql2g0gllbl"; depends=[cli dplyr htmltools htmlwidgets httpuv ids jsonlite magrittr mime reactR readr stringr]; }; @@ -2386,7 +2401,7 @@ in with self; { JM = derive2 { name="JM"; version="1.5-1"; sha256="1nx4dcd3p8f30kryp09iylnnlrvhx0dbx4f51ag7ij5m4ml80zxc"; depends=[MASS nlme survival]; }; JMI = derive2 { name="JMI"; version="0.1.0"; sha256="05phkwfb9v4g9jixlvbj6br7sbi64zvrgjwfr0v87ijddkxc9si9"; depends=[Rcpp RcppArmadillo]; }; JMbayes = derive2 { name="JMbayes"; version="0.8-85"; sha256="0s11jpzflc2zg60g4ffcw23c2f4zz3mzddrc2cl5y43xl2v304lb"; depends=[doParallel foreach Hmisc jagsUI MASS nlme Rcpp RcppArmadillo rstan shiny survival xtable]; }; - JMbayes2 = derive2 { name="JMbayes2"; version="0.1-8"; sha256="16fy3j52xd3d1bjpzrs0qaajiw9fvpdvm19jx0nbwh16npid494f"; depends=[coda ggplot2 GLMMadaptive gridExtra matrixStats nlme Rcpp RcppArmadillo survival]; }; + JMbayes2 = derive2 { name="JMbayes2"; version="0.2-0"; sha256="1r28b5bgw5q1a23lmdyapahpd50s9259xq7hzq4x0xl0cln8l95l"; depends=[coda ggplot2 GLMMadaptive gridExtra matrixStats nlme Rcpp RcppArmadillo survival]; }; JMdesign = derive2 { name="JMdesign"; version="1.2"; sha256="0l3cc7dacjx78l81v0fxda20jd8mlbaaf6vflbn6y42aq79s1yyq"; depends=[]; }; JOPS = derive2 { name="JOPS"; version="0.1.15"; sha256="01yaw657826vfsfdscv3aqgswb5s2054s755agfxqm7g6sswpa13"; depends=[boot colorspace fds fields ggplot2 MASS rpart SemiPar spam SpATS]; }; JOUSBoost = derive2 { name="JOUSBoost"; version="2.1.0"; sha256="0f3rr7aw20nvmlpqrq3wzgmr55lqdqhk3wphpqq7msgvaf1zrcl7"; depends=[doParallel foreach Rcpp rpart]; }; @@ -2433,7 +2448,6 @@ in with self; { KMunicate = derive2 { name="KMunicate"; version="0.2.1"; sha256="19bsnixy59jqpj414827l2r65jimf0swxg36bi90s3pr4mvf7snq"; depends=[checkmate cowplot ggplot2 pammtools survival tidyr]; }; KNNShiny = derive2 { name="KNNShiny"; version="0.1.0"; sha256="16zm8bhdivaap3mvhdx2qn1b1j2iqyarclb0y2qd1n4viwcfm9c1"; depends=[caret dplyr e1071 FNN psycho rhandsontable rmarkdown shiny]; }; KOBT = derive2 { name="KOBT"; version="0.1.0"; sha256="0dw6s68x95d4z5a6p8bs1368jcxv5jx0wd87js28i2qm3q57ss71"; depends=[glmnet knockoff MASS Rdpack spcov xgboost]; }; - KODAMA = derive2 { name="KODAMA"; version="1.8"; sha256="0i1lwjzxjpm9yng763hkbi88q13i9bhcwwin6b3lkif34r4c3n8y"; depends=[minerva Rcpp RcppArmadillo]; }; KOGMWU = derive2 { name="KOGMWU"; version="1.2"; sha256="1vz0099gp1r10n7w4p480l8rswdw100sns196d9xin2ibmmd2fx9"; depends=[pheatmap]; }; KONPsurv = derive2 { name="KONPsurv"; version="1.0.4"; sha256="08z24w04rzydm86z201crcmyw88sg92yqma5hzj0blj0fyqakwmi"; depends=[Rcpp survival]; }; KPC = derive2 { name="KPC"; version="0.1.1"; sha256="09zhmjv7dskkdkhrk5alxpxiwlgl9n2whfhxf237q5zfyxxa8pm9"; depends=[data_table kernlab mlpack proxy RANN]; }; @@ -2461,8 +2475,8 @@ in with self; { KnapsackSampling = derive2 { name="KnapsackSampling"; version="0.1.0"; sha256="17yzmd11k1n5iy54vbcvpzvkm8ypbl6n1kfi931wwrrcq9y7hg22"; depends=[lpSolve]; }; KneeArrower = derive2 { name="KneeArrower"; version="1.0.0"; sha256="1blmim4l7375psa9c3wbpksywj5nfbawly4001n6311wcv4dybl5"; depends=[signal]; }; KnockoffScreen = derive2 { name="KnockoffScreen"; version="0.3.0"; sha256="01r04d9ha9l5pkz3lwdcb5x5qqwk8vil9avnbnfn76wg63mdfhbk"; depends=[bigmemory CompQuadForm data_table irlba Matrix seqminer SPAtest]; }; - Knoema = derive2 { name="Knoema"; version="0.1.19"; sha256="16izh1viaqxvhgfxy2g6b9hhvm1n6nbjsj2xd45qwdibl3ly8d0f"; depends=[base64enc digest httr jsonlite lubridate xts zoo]; }; - KnowBR = derive2 { name="KnowBR"; version="2.0"; sha256="0i934gff8ldg0lm5cfcf3ip7abnparaaviq8avs7cbnacs6nw8i1"; depends=[fossil mgcv plotrix sp vegan]; }; + KnockoffTrio = derive2 { name="KnockoffTrio"; version="1.0.0"; sha256="1lsaslv4p5f4488rqf8fqydpdykdqifsdf2aa9dg1mx8d1agzcb5"; depends=[]; }; + KnowBR = derive2 { name="KnowBR"; version="2.1"; sha256="0r4df95axsrsr72ksy3sdc37sjjd6fvcpj5si7jag7q7ffs8kzmw"; depends=[fossil mgcv plotrix sp vegan]; }; KoulMde = derive2 { name="KoulMde"; version="3.2.1"; sha256="0yx04my2vwjpi4l35h1i5xwqckca8b72divww39y1frcvia33g08"; depends=[expm Rcpp RcppArmadillo]; }; Kpart = derive2 { name="Kpart"; version="1.2.2"; sha256="02df0pr8a0gm8558gbw9svxf5sybmg27grymy71ar9hjnhw5xlf2"; depends=[leaps]; }; KraljicMatrix = derive2 { name="KraljicMatrix"; version="0.2.1"; sha256="0yzilmiiyzd2x3v0cnjphf0wdwiblh37kgrvmfrdy49qly48pvi2"; depends=[dplyr ggplot2 magrittr tibble]; }; @@ -2476,7 +2490,6 @@ in with self; { LA = derive2 { name="LA"; version="0.1.3"; sha256="0yvgrm64g910h4zgavinj6ri5gvy5yjd3ydr9gqm7qdj05dsgz66"; depends=[LHD]; }; LAGOSNE = derive2 { name="LAGOSNE"; version="2.0.2"; sha256="0fhy590mnkypknxk34c7vrhwrgsjrkf1f0yvfbjy1kvzvla0hjkl"; depends=[curl dplyr lazyeval magrittr memoise progress purrr qs rappdirs rlang sf stringr tibble tidyr]; }; LAM = derive2 { name="LAM"; version="0.5-15"; sha256="18p8w2n2k4788vpxhdxnmcafwj7a5bvihk530fiynkra3xrn1cr4"; depends=[CDM Rcpp RcppArmadillo sirt]; }; - LANDD = derive2 { name="LANDD"; version="1.1.0"; sha256="13szkww9nw8zywfrqd8mwgj9csgragm0bx8ia52rcpakpc3hv3hx"; depends=[BH doParallel fdrtool foreach GGally ggplot2 GOSemSim GOstats igraph intergraph Matrix modeest mvtnorm pROC Rcpp]; }; LARF = derive2 { name="LARF"; version="1.4"; sha256="1sqib7smgjacn07ishwls1nlbvcb6fpp1vhrjwf9g4xf9jk30i8h"; depends=[Formula]; }; LARGB = derive2 { name="LARGB"; version="0.1.0"; sha256="0ksyagp4wy1rm7kll6rgdx2735k6ywlaf08d6yys9cv090rpc8l3"; depends=[dplyr imager]; }; LARisk = derive2 { name="LARisk"; version="1.0.0"; sha256="13d008v8aypqlx35bf16y7rcfcv5qnbsi8q0zpfcl03rzxmqpb8b"; depends=[dplyr Rcpp]; }; @@ -2495,7 +2508,6 @@ in with self; { LDAvis = derive2 { name="LDAvis"; version="0.3.2"; sha256="1y9wd379rfv3rd3f65ll21nvh6i8yafvv11f8gw8nn06194dgfzg"; depends=[proxy RJSONIO]; }; LDLcalc = derive2 { name="LDLcalc"; version="1.1"; sha256="1vxf6280kjy144mqxyrhvxa9hr3jg8qvyd9dff5haa604sr2s778"; depends=[caret caretEnsemble corrplot Cubist data_table earth gbm glmnet kernlab lares lattice randomForest RColorBrewer resample]; }; LDNN = derive2 { name="LDNN"; version="1.10"; sha256="092mnjdmc0l471vd8nym09r9sfx1scp4x6nh22mj6413vaicagq0"; depends=[devtools keras reticulate tensorflow]; }; - LDOD = derive2 { name="LDOD"; version="1.0"; sha256="0mf2sy01yv57mqicrz08a17m6crigklx6fmw9zpxv7g85qw1iq4v"; depends=[Rmpfr Rsolnp]; }; LDPD = derive2 { name="LDPD"; version="1.1.2"; sha256="1khdx8vwlpliyjc4sxcdiywbxl8lc9f5s3457vcip1j8dv537lbm"; depends=[MASS nleqslv]; }; LDRTools = derive2 { name="LDRTools"; version="0.2-1"; sha256="05srfyplsypi3whfa71lx7pnad23irpf0p7rxmrpv28jgdmrz6wf"; depends=[]; }; LDcorSV = derive2 { name="LDcorSV"; version="1.3.3"; sha256="0wr8i9q9p48vpcia8v3rd8bb2pfijr9r6kg9x26k4wncpg7n83cp"; depends=[]; }; @@ -2515,24 +2527,24 @@ in with self; { LIC = derive2 { name="LIC"; version="0.0.1"; sha256="1fmd3sjzzkcpbin9ak72yvv4ibrrwhzqxymmpsppqfv1syk6h6s4"; depends=[]; }; LICORS = derive2 { name="LICORS"; version="0.2.0"; sha256="0p9y21k1mj1v397jpb5g6jiw7rpzbyfwr4kv2rp3lyxyasy2ykf0"; depends=[fields FNN locfit Matrix mvtnorm RColorBrewer zoo]; }; LIHKGr = derive2 { name="LIHKGr"; version="0.1.0"; sha256="16yyalsdbaxncgfabsz2q2fixzmwyd62gvnvnxazf4vlypp6xlqz"; depends=[dplyr magrittr purrr R6 raster RSelenium rvest tibble xml2]; }; - LIHNPSD = derive2 { name="LIHNPSD"; version="0.2.1"; sha256="08ils29vvaq6abkgxbh028vwjw6l6h10cirbnwr65s458zvh4xqv"; depends=[BB Bolstad2 moments optimx Rmpfr sn]; }; LIM = derive2 { name="LIM"; version="1.4.6"; sha256="03x1gnm06bw1wrzc01110bjzd2mvjdzbc2mbrazh22jrmb32w5d8"; depends=[diagram limSolve]; }; LINselect = derive2 { name="LINselect"; version="1.1.3"; sha256="1qxqwph5ja2kf1s4ggsv8w6hjgf9mr53a0gahhjix2v78309z42g"; depends=[elasticnet gtools MASS mvtnorm pls randomForest]; }; LIStest = derive2 { name="LIStest"; version="2.1"; sha256="1gk253v3f1jcr4z5ps8nrqf1n7isjhbynxsi9jq729w7h725806a"; depends=[]; }; - LKT = derive2 { name="LKT"; version="1.0.1"; sha256="1a3mpjzl04gp7688gaknp8la84ljsj49id06b5y6r51kyiqip6dv"; depends=[data_table glmnet glmnetUtils LiblineaR lme4 Matrix SparseM]; }; + LKT = derive2 { name="LKT"; version="1.1.0"; sha256="18dphv8rgdf3plci4i57hdryra43mvaifr4xh88ckddza42a3af7"; depends=[data_table glmnet glmnetUtils LiblineaR lme4 Matrix SparseM]; }; LLM = derive2 { name="LLM"; version="1.1.0"; sha256="0kxppzaim7cmjawg5rjih4dsz8adq0asairgq3vx5lyjppb2cybx"; depends=[partykit reghelper RWeka scales stringr survey]; }; LLSR = derive2 { name="LLSR"; version="0.0.3.1"; sha256="0nci8p3gw35a3ifwrq7r2jih718p2iwmmh3495qnh0fk304y7kbi"; depends=[crayon digest dplyr ggplot2 minpack_lm nleqslv openxlsx rootSolve svDialogs svglite]; }; LMERConvenienceFunctions = derive2 { name="LMERConvenienceFunctions"; version="3.0"; sha256="0jg889qh5a9wdi01yiw6z7kivs9dzh5dcq39f4zifdpqzglhshzb"; depends=[fields LCFdata lme4 Matrix mgcv]; }; LMMELSM = derive2 { name="LMMELSM"; version="0.1.0"; sha256="1wrda19629k7fg3rryk9sf16h1w5915cifv7iiqqg64k8w1vwnaj"; depends=[BH Formula loo MASS nlme Rcpp RcppEigen rstan rstantools StanHeaders]; }; LMMsolver = derive2 { name="LMMsolver"; version="1.0.0"; sha256="0ri89i5q3026ambm1zk24adi0jf22wb9assklwsqzz2kmh54k282"; depends=[agridat ggplot2 maps Matrix Rcpp sp spam]; }; - LMMstar = derive2 { name="LMMstar"; version="0.4.4"; sha256="0fjw0q65xid0389in4jiha6m4n720444cm7plc0l59rcp65n8xwg"; depends=[emmeans ggplot2 lava Matrix multcomp nlme numDeriv reshape2 sandwich]; }; + LMMstar = derive2 { name="LMMstar"; version="0.5.2"; sha256="0s5j6lwyh8wswkkgi3d2j0cb3md5x2xk086hr3hjhimbazcr46xr"; depends=[emmeans ggplot2 lava Matrix multcomp nlme numDeriv reshape2 sandwich]; }; + LMN = derive2 { name="LMN"; version="1.1.2"; sha256="17xsf61dnpvbhxwbgqjj9k26xwd9s90vfzv2ymj1i2g5zdd6w9k7"; depends=[Rcpp RcppEigen SuperGauss]; }; LMest = derive2 { name="LMest"; version="3.0.2"; sha256="0x80cgd54qw1l4wayxwyyccmajn5i227727wlsgm6s4chnpvispz"; depends=[diagram Formula MASS mclust mix MultiLCIRT mvtnorm scatterplot3d]; }; LMfilteR = derive2 { name="LMfilteR"; version="0.1.3"; sha256="0c27154jghfl83n3sn26pr8mjcybrq02glvnjcx8hllrmz4gmnmi"; depends=[MASS]; }; LMoFit = derive2 { name="LMoFit"; version="0.1.6"; sha256="10xiaa5h8c0sq9z70yjs29z8jnjyqgybdv33d6s2100h3n46jd31"; depends=[ggplot2 lmom pracma sf]; }; LNIRT = derive2 { name="LNIRT"; version="0.5.1"; sha256="0w32qvz5mhzg6f8050p57v26amn6d2il2icjfiypf7yi3gsx7w09"; depends=[MASS]; }; LOGAN = derive2 { name="LOGAN"; version="1.0.0"; sha256="00y8kcykw01gv2g20vmpwkc3qqyafwbiw5pa731xlfnh1b8sn0hi"; depends=[dplyr foreign ggplot2 magrittr modules pander psych rlang stringr]; }; LOGICOIL = derive2 { name="LOGICOIL"; version="0.99.0"; sha256="1wgg7kigzzk5ghjn3hkjf1bb8d6mvjfmkwq64phri5jpxd742ps9"; depends=[nnet]; }; - LOMAR = derive2 { name="LOMAR"; version="0.1.0"; sha256="1rd3xnidhk6a3yawlk8ilr8v1a8ghsj3sxx5mp2x47dc8k4bj4da"; depends=[aws data_table dbscan doParallel EBImage ff foreach pracma proxy RANN reshape2 TDA transport]; }; + LOMAR = derive2 { name="LOMAR"; version="0.2.0"; sha256="1wfkair4zzd58s36mc9gyk7d24cp6y2lrg7qsg0acx3b00wzdjwq"; depends=[aws BH data_table dbscan doParallel EBImage ff FNN foreach pracma proxy RANN Rcpp reshape2 transport]; }; LOPART = derive2 { name="LOPART"; version="2020.6.29"; sha256="1zxaag5pj3l9rzxhlrkx8q4adlap7wsdysb4y6ijvsmxvv63j22k"; depends=[data_table Rcpp]; }; LOST = derive2 { name="LOST"; version="2.0.2"; sha256="15ggmvjy2k4j692y9h3anfzmb0hgnx66cbr76grwvcfysdx87ick"; depends=[e1071 gdata geomorph MASS miscTools pcaMethods rgl shapes]; }; LPBkg = derive2 { name="LPBkg"; version="1.2"; sha256="1pgv6cb7m2j7qnrzybnv6x67a3ry8kpvisqj86rvxzclc9q56fdn"; depends=[Hmisc orthopolynom polynom]; }; @@ -2550,6 +2562,7 @@ in with self; { LPower = derive2 { name="LPower"; version="0.1.1"; sha256="00sabp2snfm0175c0cfyv83yd1zb3b8h2wrr7yxgkmr4i3py1fn7"; depends=[MASS nlme]; }; LPsmooth = derive2 { name="LPsmooth"; version="0.1.3"; sha256="0fvn6vwfl37xhzzj44vadk8fr3d85zv58jjg7qfdjqvyw8khd59p"; depends=[Hmisc LPBkg LPGraph nloptr orthopolynom polynom truncnorm]; }; LREP = derive2 { name="LREP"; version="0.1.1"; sha256="1dh6f12zvm8ff7vkl118bygyly68rdw6bqf2isjd01ji7d4w70cj"; depends=[]; }; + LRMF3 = derive2 { name="LRMF3"; version="0.1.0"; sha256="0j9hnin3yic118766if6gysq0g4mkqw40b0873g4ggjkgxndxrqn"; depends=[glue Matrix]; }; LRQMM = derive2 { name="LRQMM"; version="1.2.3"; sha256="149z6wggyz9p39vanw5m2iw5v69spxdj8ciarrswj5ddvkli7940"; depends=[GeneticsPed kinship2 Matrix MCMCglmm quantreg R_matlab rsvd SparseM sparsesvd]; }; LRTH = derive2 { name="LRTH"; version="1.3"; sha256="08vakwb7ca7956gifynzijka441yyx0wd5bq5jfhz56lzcxgfb99"; depends=[]; }; LRcontrast = derive2 { name="LRcontrast"; version="1.0"; sha256="0fs06p853r42nws2camvs87py39hb1ssxhfm6d5n9kkq81snfx4q"; depends=[DoseFinding]; }; @@ -2559,8 +2572,8 @@ in with self; { LSAmitR = derive2 { name="LSAmitR"; version="1.0-2"; sha256="15qyij193scrvc1ghcssr6qdzxc4l4qh199s09bz5hvr62zwfdgb"; depends=[Hmisc lme4]; }; LSC = derive2 { name="LSC"; version="0.1.5"; sha256="1nlnwqb24sbgvl96azh8a833ij5xknjr2wr8shs59lm2n63a3ql9"; depends=[fields gam LICORS Matrix RColorBrewer]; }; LSD = derive2 { name="LSD"; version="4.1-0"; sha256="17pbdlcbhzf3v7l42mjikln1ga5xjp5r78gjg6a88iahk0lwwlvm"; depends=[]; }; - LSDinterface = derive2 { name="LSDinterface"; version="1.1.0"; sha256="0mr4d7l7hvn4m2ny8zz6ffyxxmlgqjg5v7pc83q4gq1fzvxs2bhy"; depends=[abind boot]; }; - LSDsensitivity = derive2 { name="LSDsensitivity"; version="1.1.2"; sha256="10654gc46szavgw2nzg3s6bid57jgd291qbb6xl0wprzwsg006j5"; depends=[abind car DiceKriging diptest kSamples lawstat LSDinterface randtoolbox rgenoud sensitivity tseries]; }; + LSDinterface = derive2 { name="LSDinterface"; version="1.2.0"; sha256="00adw2cdfcfnp2f3i31fcm531iw9ik9csfhygd2171a32rdkj752"; depends=[abind boot TSdist]; }; + LSDsensitivity = derive2 { name="LSDsensitivity"; version="1.2.0"; sha256="0fi3k5j3si85p95b40jp6fqfsy7qay0xf3sjq6a0pf4j7j59agb3"; depends=[abind car DiceKriging diptest kSamples lawstat LSDinterface randtoolbox rgenoud sensitivity tseries]; }; LSE = derive2 { name="LSE"; version="1.0.0"; sha256="01qj0zasv7dbwg0qxryz1d5jp4rapvnm9i6a4jd7c4pxqdm11j7y"; depends=[MASS pracma]; }; LSMRealOptions = derive2 { name="LSMRealOptions"; version="0.2.1"; sha256="0paa5yahpyr8jpgy8aqk2fcixdny6ip09vqm8varvpiqfxrjd6ww"; depends=[]; }; LSMonteCarlo = derive2 { name="LSMonteCarlo"; version="1.0"; sha256="0w5042phkba5dw92r67ppp2s4khjpw5mm701dh9dya9lhj88bz6s"; depends=[fBasics mvtnorm]; }; @@ -2569,11 +2582,12 @@ in with self; { LST = derive2 { name="LST"; version="1.1.0"; sha256="0vmdd4mvpm1mkb2qffkjpzwsg7xiw8sr2q4a69694bsy59vk43cd"; depends=[raster]; }; LSTS = derive2 { name="LSTS"; version="2.1"; sha256="0pxcw5awm6fr6v1n8gd7yap0y1mba9khwgq27qlv9h2kmrzbr3hp"; depends=[ggplot2 patchwork Rdpack scales]; }; LSVAR = derive2 { name="LSVAR"; version="1.2"; sha256="0lhx9a5l3s2c5isd3fhvxxfdazdxddpkg07hk4rckvhmxln7j1dj"; depends=[igraph mvtnorm pracma]; }; - LSX = derive2 { name="LSX"; version="1.0.2"; sha256="16dmi4nl4mxx37bb0cp5bpx2817smhq4vxh3bsz4p3am1jfrhzak"; depends=[digest ggplot2 ggrepel irlba locfit Matrix proxyC quanteda quanteda_textstats reshape2 rsparse RSpectra rsvd stringi]; }; + LSWPlib = derive2 { name="LSWPlib"; version="0.1.0"; sha256="1z4lcpmbm3wdzbi04flvspkimk4jfhjqi5pd0ab4pbb0ii1z26hs"; depends=[waveslim wavethresh]; }; + LSX = derive2 { name="LSX"; version="1.1.1"; sha256="0dmxxqy0yjyif3w3dxfxyfkmnyvxfrjgr4mvy41cw5smkrhh7b49"; depends=[digest ggplot2 ggrepel irlba locfit Matrix proxyC quanteda quanteda_textstats reshape2 rsparse RSpectra rsvd stringi]; }; LTPDvar = derive2 { name="LTPDvar"; version="1.2"; sha256="0r9v5g5y9n85jdcvm7zpapm73ism48m3mmybpcmgcs028h2ndv7v"; depends=[]; }; LTRCforests = derive2 { name="LTRCforests"; version="0.5.5"; sha256="0f0am4wydk4wqiwjzxj2ibdkp5sd47qam4218nn0489knkvas3s7"; depends=[ipred partykit prodlim survival]; }; LTRCtrees = derive2 { name="LTRCtrees"; version="1.1.1"; sha256="1k16m2fpwn8m4dvm1b82srf3bgkvkwf6kcjpwjgkdappifc7p5m8"; depends=[icenReg Icens interval inum partykit rpart survival]; }; - LUCIDus = derive2 { name="LUCIDus"; version="2.1.0"; sha256="133cxmvsxm26jmx65snfswqf69ch10bnfbninkks80h2c1y46kq6"; depends=[boot glasso glmnet lbfgs mclust networkD3 nnet]; }; + LUCIDus = derive2 { name="LUCIDus"; version="2.1.4"; sha256="1df3k5jl57l07f13k854izmxf1vnml54lx1d3zrz3gqvhhzrpl40"; depends=[boot glasso glmnet jsonlite mclust networkD3 nnet]; }; LVGP = derive2 { name="LVGP"; version="2.1.5"; sha256="03sd777s16nv04ikn9b3rj67ad6n4bwi0rycc7wqdnq0dx6xgniy"; depends=[lhs randtoolbox]; }; LW1949 = derive2 { name="LW1949"; version="1.1.0"; sha256="147ymp7j98ihp1dcz3p5v9ar6h767phjdnga5q5vf1wwa2mxawg7"; depends=[MASS mgcv plotrix]; }; LWFBrook90R = derive2 { name="LWFBrook90R"; version="0.4.5"; sha256="1mqxay678baxqkmbcknn5bq3bw6fk9nr04ljsbh13wqxz27iw5bj"; depends=[data_table doFuture foreach future iterators progressr vegperiod]; }; @@ -2587,7 +2601,8 @@ in with self; { Lahman = derive2 { name="Lahman"; version="9.0-0"; sha256="0q6whyqlxdkm17i6hichnd89y3pnjc0xc5aabdanf1i4lpv5vynr"; depends=[dplyr]; }; LakeMetabolizer = derive2 { name="LakeMetabolizer"; version="1.5.0"; sha256="06mvdrdyl0rh9rwd0jxww0sycadcp7cj08hq35q6vyzq0jkxn2xf"; depends=[plyr rLakeAnalyzer]; }; Lambda4 = derive2 { name="Lambda4"; version="3.0"; sha256="04ikkflfr0nmy1gr3gfldlh2v8mpl82k1wwnzp57d2kn75m9vbxz"; depends=[]; }; - LambertW = derive2 { name="LambertW"; version="0.6.6"; sha256="02pi98nnscaz044jkh2nrxxdyafdbiy9x0szdfkx894s3bwrf29i"; depends=[ggplot2 lamW MASS RColorBrewer Rcpp reshape2]; }; + LambertW = derive2 { name="LambertW"; version="0.6.7"; sha256="15ad642cldn2dy6c1dcsyngv94901imi76v6yi50nr1qqad0jilq"; depends=[ggplot2 lamW MASS RColorBrewer Rcpp reshape2]; }; + Landmarking = derive2 { name="Landmarking"; version="1.0.0"; sha256="1gkfv1xcjkbh417kv9dkflfg6agvgrd893v8ams25c2pazfmrmnz"; depends=[dplyr ggplot2 mstate nlme pec prodlim riskRegression survival]; }; Langevin = derive2 { name="Langevin"; version="1.3.1"; sha256="0sg3way9hlk875dfwbby59qm5dxwq7d763a0xjgjwaygpwqc83kz"; depends=[Rcpp RcppArmadillo]; }; LaplaceDeconv = derive2 { name="LaplaceDeconv"; version="1.0.4"; sha256="0n56cmrb536j1vmfizzag1x8wm68c2znpclwbdl8qraqzp8rmffx"; depends=[orthopolynom polynom]; }; LaplacesDemon = derive2 { name="LaplacesDemon"; version="16.1.6"; sha256="1dsfp65cg06f25zjzd5ib4qyn1alfhbhpgyvpcw5n6bszn13idap"; depends=[]; }; @@ -2631,7 +2646,7 @@ in with self; { LinkageMapView = derive2 { name="LinkageMapView"; version="2.1.2"; sha256="101g4djzkxgxbn87an2vz4s9nwn8gwz7a3p3wg0y4zpdd1pdp716"; depends=[plotrix qtl RColorBrewer]; }; LinkedGASP = derive2 { name="LinkedGASP"; version="1.0"; sha256="1win1yd8y677rmic531dyd29f49p7pr1r3kbjysvv9syi5nkydyj"; depends=[nloptr spBayes]; }; LinkedMatrix = derive2 { name="LinkedMatrix"; version="1.4.0"; sha256="0p6qjnrljxnj3c5nynmx563vcqhxj4jf7czqdg750h38gjy8qzxi"; depends=[crochet]; }; - LipidMS = derive2 { name="LipidMS"; version="3.0.2"; sha256="02h60gqbm6dp553m68zjf5vwwxnlym6k5qi2r6r5s5mpsd4vlp0l"; depends=[CHNOSZ doParallel foreach iterators readMzXmlData scales shiny shinythemes]; }; + LipidMS = derive2 { name="LipidMS"; version="3.0.3"; sha256="0i7b9lw40i6hrbzzqs9jncw9qx2hm8z7xc4jnn3nyjlw2qps5asg"; depends=[CHNOSZ doParallel foreach iterators readMzXmlData scales shiny shinythemes]; }; Lmoments = derive2 { name="Lmoments"; version="1.3-1"; sha256="0pc63bj9a8hzr5m3yssrc4kin39fffwkl8rggs3sagzr12d4i7bw"; depends=[Rcpp RcppArmadillo]; }; LncFinder = derive2 { name="LncFinder"; version="1.1.5"; sha256="0mb41fjph4svn2amdx6fb2j8pzgll17c0xxwnsan9vjipnmj59hi"; depends=[caret e1071 seqinr]; }; LncPath = derive2 { name="LncPath"; version="1.1"; sha256="1cpsy681yq96867nr9g75xb0dilb016shqlhxpdn5xyiakrgjl4v"; depends=[igraph]; }; @@ -2641,13 +2656,13 @@ in with self; { Lock5Data = derive2 { name="Lock5Data"; version="3.0.0"; sha256="1407vkcdphy5pb4sgy2ms36vjffiwg2l2753gbszm9wv2m0wrnv4"; depends=[]; }; Lock5withR = derive2 { name="Lock5withR"; version="1.2.2"; sha256="10x3i11pb4cig4pgfmw9984na5zjbg7d41y6crakiimf53ihx0c2"; depends=[]; }; LogConcDEAD = derive2 { name="LogConcDEAD"; version="1.6-5"; sha256="0pwq1bdmn040bkwal7xsmjv2asvpyshipbglqb16h2z7yq0vwmv7"; depends=[MASS mclust mvtnorm]; }; - LogRegEquiv = derive2 { name="LogRegEquiv"; version="0.1.2"; sha256="158glnha6vl8kc2g6rg8m8xi400pyqgrh2scmb3bsxbbbqd5z1p8"; depends=[]; }; + LogRegEquiv = derive2 { name="LogRegEquiv"; version="0.1.5"; sha256="1j23w3fmd2swk2mzbmsq7hy878cm7cs1li65srjc9m79az9vgr3h"; depends=[]; }; LogicReg = derive2 { name="LogicReg"; version="1.6.4"; sha256="0517rp55c1h8hwrz3dmnkdc6wzs6ialzdpw50icadcg9q8d0h9i0"; depends=[survival]; }; LogisticDx = derive2 { name="LogisticDx"; version="0.3"; sha256="1hry32grqwlarp0cplx8szf4pf7ml1nxd11ahffmr72ihcv5ckga"; depends=[aod data_table pROC RColorBrewer rms speedglm statmod]; }; - LogitNet = derive2 { name="LogitNet"; version="0.1-1"; sha256="08xi5rpbqkc1b3qj24blv3l0r68wcqbsbjcqxiypm75f3c2irc4i"; depends=[]; }; + LogisticRCI = derive2 { name="LogisticRCI"; version="1.1"; sha256="158rl8jjmmhnja287i29rjiq309niwbvxmzx4f9lkl83nxn4mzf7"; depends=[]; }; LogrankA = derive2 { name="LogrankA"; version="1.0"; sha256="005zkpzi8h03qvqlpkygrf9xv4q77klafkfxw47x04jvkhklwigb"; depends=[]; }; LongCART = derive2 { name="LongCART"; version="3.1"; sha256="0f6kzlswxb1jb8hg4c3966ihwcqbkd5mkfqjjkzviq8idpyhsk4x"; depends=[Formula magic nlme rpart survival survminer]; }; - LongDat = derive2 { name="LongDat"; version="1.0.1"; sha256="05xjazgr3ms0bl8lrca920bd835h9562zb30hkqlv7q5i09z4rha"; depends=[bestNormalize car dplyr effsize emmeans ggplot2 glmmTMB lme4 magrittr MASS patchwork reshape2 rlang rstatix stringr tibble tidyr]; }; + LongDat = derive2 { name="LongDat"; version="1.0.3"; sha256="05mb6nszh7dl81n9rps1bvslsc4hf9cq1mfnigkkkfv6z4pg4rf1"; depends=[bestNormalize car dplyr effsize emmeans ggplot2 glmmTMB lme4 magrittr MASS patchwork reshape2 rlang rstatix stringr tibble tidyr]; }; LongMemoryTS = derive2 { name="LongMemoryTS"; version="0.1.0"; sha256="0n378sad8i283vs7q63spdhwpwjly2d5zj15d4v2085j7sc7z8vi"; depends=[fracdiff longmemo mvtnorm partitions Rcpp RcppArmadillo]; }; LongituRF = derive2 { name="LongituRF"; version="0.9"; sha256="0h70g0qhv0rgz40i58ykrcak1wibbvya7fql0v79xkd21217y1av"; depends=[latex2exp mvtnorm randomForest rpart]; }; LoopAnalyst = derive2 { name="LoopAnalyst"; version="1.2-6"; sha256="1gy9v6qiwkwbwp4snif2imf6zn50ffjrig54ln57c5v5pk3phnvv"; depends=[nlme]; }; @@ -2672,14 +2687,13 @@ in with self; { MAKL = derive2 { name="MAKL"; version="1.0.0"; sha256="0x0b7jpx3hiipmy7jgh8dnz1rnbh512g81fv62049c8v6wg47pd7"; depends=[AUC grplasso]; }; MALDIquant = derive2 { name="MALDIquant"; version="1.21"; sha256="1y1g3819ss06dry70kfhg2syddw71682qmzkcyppfsma6hhghw87"; depends=[]; }; MALDIquantForeign = derive2 { name="MALDIquantForeign"; version="0.13"; sha256="0xxdvfg9h6vl2g2wlxfmrskn8576rd958mn5jblryyqg9xbanlhr"; depends=[base64enc digest MALDIquant readBrukerFlexData readMzXmlData XML]; }; - MALDIrppa = derive2 { name="MALDIrppa"; version="1.0.5-1"; sha256="0wchd0g5bl4hd1y8a6ic13n35l9b68rlzx8sa745grj3bnb2a955"; depends=[lattice MALDIquant robustbase signal]; }; + MALDIrppa = derive2 { name="MALDIrppa"; version="1.1.0"; sha256="0463wm7y4xj15f8601ng744gzsn3bj4iczv8bsjyx0asbsxha9fx"; depends=[lattice MALDIquant robustbase signal waveslim]; }; MAMS = derive2 { name="MAMS"; version="2.0.0"; sha256="05pnrxziwsgnhy05fac8smxcm65zxi2dl7lar2jakiamd2hxv3c2"; depends=[future future_apply mvtnorm]; }; MANCIE = derive2 { name="MANCIE"; version="1.4"; sha256="0940xl3z5bca6hcnj2bj341l79wajilxlxzmyz3dlgrz0b3bbdmm"; depends=[]; }; MANOVA_RM = derive2 { name="MANOVA.RM"; version="0.5.3"; sha256="0gdyd7avdc7jh1hp03wlbqi5krijxrgargkivq97qyk83zf387dx"; depends=[data_table ellipse magic MASS Matrix multcomp plotrix plyr]; }; MAP = derive2 { name="MAP"; version="0.1.3"; sha256="19d0m30jh50ibbdgvcvq1vsz5i1vf8qvl0d0nbqklvnndch61jhk"; depends=[flexmix Matrix]; }; MAPA = derive2 { name="MAPA"; version="2.0.4"; sha256="02s223s58k2jk49m0xlz3q9m3nip3h4dl4v58j18z2vgi54dwnjr"; depends=[forecast RColorBrewer smooth]; }; MAPITR = derive2 { name="MAPITR"; version="1.1.2"; sha256="0vmsdspja4qfs2z14p835g78zggk8h54v25cn268z1hg2p6zxish"; depends=[CompQuadForm doParallel Rcpp RcppArmadillo]; }; - MAPLES = derive2 { name="MAPLES"; version="1.0"; sha256="0hzsh7z1k7qazpxjqbm9842zgdpl51irg7yfd119a7b2sd3a8li9"; depends=[mgcv]; }; MARSANNhybrid = derive2 { name="MARSANNhybrid"; version="0.1.0"; sha256="1xs0gjdjl9c5i1i8ds9s3sq0764267h6gngkbwimfa8miq287idm"; depends=[earth neuralnet]; }; MARSS = derive2 { name="MARSS"; version="3.11.4"; sha256="10mf1vs51yqqg6s2435j84xbaxvr6wdraha07mqlr2rmprgl5a0r"; depends=[KFAS mvtnorm nlme]; }; MARSSVRhybrid = derive2 { name="MARSSVRhybrid"; version="0.1.0"; sha256="10b8d75q5hiqf8id1qsvjx379xyx4vphq5r1iwvykjaw4zxbyx65"; depends=[e1071 earth]; }; @@ -2692,7 +2706,6 @@ in with self; { MATTOOLS = derive2 { name="MATTOOLS"; version="1.1"; sha256="1nzrkm3a08rpsd9vplyf33rrkadlrd0ln70k95qxj98ndh2v97px"; depends=[]; }; MAVE = derive2 { name="MAVE"; version="1.3.11"; sha256="01n204bxabbm8pcpayy2s0jvhg73r5cv0026lb3vbk0m40z02kcz"; depends=[mda Rcpp RcppArmadillo]; }; MAVTgsa = derive2 { name="MAVTgsa"; version="1.3"; sha256="0rzal9nsi8y873cbf6hrdyzyxnpd4r1yr9fj66cn0s1c8g93ls0y"; depends=[corpcor foreach MASS multcomp randomForest]; }; - MAc = derive2 { name="MAc"; version="1.1.1"; sha256="1dawqmziffaz8wgcqzwc0yifdq65abgn24vafkrwa9850048c26f"; depends=[]; }; MAclinical = derive2 { name="MAclinical"; version="1.0-5"; sha256="1g0ka1kqww2xim8rp5rznkzn0a541zvf841s3lbphfh9k3y3ixs3"; depends=[e1071 party plsgenomics st]; }; MAd = derive2 { name="MAd"; version="0.8-2.1"; sha256="096vdhfsp7bd3zvv6ydai6p230r16jx8zlqc4hlhnzma8rqypm35"; depends=[]; }; MAnorm2 = derive2 { name="MAnorm2"; version="1.2.0"; sha256="0g2njf2jfra1yd8i6bxivpp4jhqxkwn1hlhfg7n3ggzixmnbgai6"; depends=[locfit scales statmod]; }; @@ -2701,10 +2714,10 @@ in with self; { MBC = derive2 { name="MBC"; version="0.10-5"; sha256="0iks5nhk4im7l1dxgwcwi4mlnh271zfq9mrlaklpk38zakzyf2n4"; depends=[energy FNN Matrix]; }; MBCbook = derive2 { name="MBCbook"; version="0.1.1"; sha256="0jmvgyzrahnxfkwdn86k3ffk0zfbbd34ya4zmlnsmp2m9xds7lgn"; depends=[MASS mclust mvtnorm Rmixmod]; }; MBCluster_Seq = derive2 { name="MBCluster.Seq"; version="1.0"; sha256="0xbi2r0g0gzsy05qrq1ljr5f5s3glwxj204vk2f1lgwdx3fd116m"; depends=[]; }; - MBESS = derive2 { name="MBESS"; version="4.8.1"; sha256="09r9rkyprajrq30v671xsf1q5nmy2fijw19dd73rpnfmdg3nqiyf"; depends=[boot lavaan MASS mnormt nlme OpenMx sem semTools]; }; + MBESS = derive2 { name="MBESS"; version="4.9.0"; sha256="0qmyvjx2zn5hlzdbz8c94g8l4707swhn7sq9mxkdqiydmflzv0b5"; depends=[boot lavaan MASS mnormt nlme OpenMx sem semTools]; }; MBHdesign = derive2 { name="MBHdesign"; version="2.2.2"; sha256="1z5jg4gb9jkc7cjy0413zj3lszqb28zx39bfmk59lls9d016iaak"; depends=[class geometry mgcv mvtnorm randtoolbox raster]; }; MBI = derive2 { name="MBI"; version="1.0"; sha256="1lb0sjwa6x360n9a9pagz6yhxh37gxq1fk0f5c3i2sd56ny9jpns"; depends=[]; }; - MBNMAdose = derive2 { name="MBNMAdose"; version="0.3.0"; sha256="12ij19828nd1r0x1vp7clkwr0zfksk3f755xghzylz0ryjjb716d"; depends=[checkmate dplyr formatR igraph magrittr R2jags Rdpack reshape2 rgeos rjags scales utf8]; }; + MBNMAdose = derive2 { name="MBNMAdose"; version="0.4.1"; sha256="1825vqdwzachig7fg3s8gq64m1gdh9gjccv5y9r0qh9x5015s0f1"; depends=[checkmate dplyr igraph magrittr R2jags Rdpack reshape2 rgeos rjags scales]; }; MBNMAtime = derive2 { name="MBNMAtime"; version="0.2.1"; sha256="1qm8g9hljl3qsnh434dzg2y0iyq635ym1ygfzr0q8l6h76qr7p1j"; depends=[checkmate dplyr knitr magrittr R2jags Rdpack reshape2 rjags]; }; MBSGS = derive2 { name="MBSGS"; version="1.1.0"; sha256="1h5vhmpgrqza12j7ivhwgd5wyb7kkb8mjbxl5w756vyid8g03flz"; depends=[MASS MCMCpack mgcv mnormt truncnorm]; }; MBSP = derive2 { name="MBSP"; version="1.0"; sha256="0mds6jfqgmnm4saqqqqqfcg8zh4qsvd2503g3ij1sn70f0aakwaj"; depends=[coda GIGrvg MASS Matrix MCMCpack]; }; @@ -2723,10 +2736,10 @@ in with self; { MCMC4Extremes = derive2 { name="MCMC4Extremes"; version="1.1"; sha256="06p6xdbja7vrdq4vnhybpkmyf4rkaihcmy9sc81sb0h2wa21vcq0"; depends=[evir]; }; MCMCglmm = derive2 { name="MCMCglmm"; version="2.33"; sha256="1z6l2lbirjrdvvkd6yp55p6gjlc0bcz79k2yl2i5zvgqk7kp4vdm"; depends=[ape coda corpcor cubature Matrix tensorA]; }; MCMChybridGP = derive2 { name="MCMChybridGP"; version="5.4"; sha256="19nbch76g7jf53nrb1lyzr3zd0z6rpz2k86mq1r9aidwwxh81g7p"; depends=[MASS]; }; - MCMCpack = derive2 { name="MCMCpack"; version="1.6-0"; sha256="16zjx8yz29ii75wfxj3p562l657bng8jnwzp2b54s7fiaws4kfdm"; depends=[coda lattice MASS mcmc quantreg]; }; + MCMCpack = derive2 { name="MCMCpack"; version="1.6-1"; sha256="1skanp6czfk83s13dnjrb699m9z6a0r59q0f79fv0k560jc8vbrj"; depends=[coda lattice MASS mcmc quantreg]; }; MCMCprecision = derive2 { name="MCMCprecision"; version="0.4.0"; sha256="0r0qchiv61sk3drrb0rhwsk55gci4w343hd2gsvclrlyb8r9qhaf"; depends=[combinat Matrix Rcpp RcppArmadillo RcppEigen RcppProgress]; }; MCMCtreeR = derive2 { name="MCMCtreeR"; version="1.1"; sha256="00r6f62h7ryil7qxd25icvkqypjjssjsrz4i5sbqsnw5cdy5al8z"; depends=[ape coda sn]; }; - MCMCvis = derive2 { name="MCMCvis"; version="0.15.3"; sha256="0519pm6khya2jxkqbyiv6h17m0ijczivq7sfn3i8jmgvz4r7zqmr"; depends=[coda overlapping rlang rstan]; }; + MCMCvis = derive2 { name="MCMCvis"; version="0.15.5"; sha256="1sh8znwk2s6gx7q6h1ps5yid24ywj2fpng0c7nckrfkywb5h5j14"; depends=[coda colorspace overlapping rstan]; }; MCPAN = derive2 { name="MCPAN"; version="1.1-21"; sha256="0q1m0xg8825q9zjwxcz2h2n0dyr21q5bk29qbqpdhirlwm6f1a51"; depends=[magic MCMCpack multcomp mvtnorm plyr]; }; MCPMod = derive2 { name="MCPMod"; version="1.0-10.1"; sha256="0j15dpxy62vwbd6pcsvkbpi1nklh0yjzwf53kcmv4jhj0v6xmpp9"; depends=[lattice mvtnorm]; }; MCPModGeneral = derive2 { name="MCPModGeneral"; version="0.1-1"; sha256="0izhbiivlb818ak49hl1f7li1chlyrxk5f80cmw4zkim3l6ddaxq"; depends=[DoseFinding MASS]; }; @@ -2754,6 +2767,7 @@ in with self; { MEGENA = derive2 { name="MEGENA"; version="1.3.7"; sha256="0cr10pmj1n831scz5kgaq3nkglr3imwgc62cxng2dvdxr9991g21"; depends=[BH cluster doParallel foreach fpc ggplot2 ggraph ggrepel igraph Matrix Rcpp reshape]; }; MEMSS = derive2 { name="MEMSS"; version="0.9-3"; sha256="0fq85jrajfwavq2fvsw2x9hknc57wc253zw2vw970f04khfbragd"; depends=[lme4]; }; MEPDF = derive2 { name="MEPDF"; version="3.0"; sha256="15hbp7g5dsdpvi239jm6jn11fn371ir6la31g0flqkilq6sr1sqd"; depends=[gtools mvtnorm plyr pracma]; }; + MERO = derive2 { name="MERO"; version="0.1.1"; sha256="0kzqx6m0vyq5g3ngah58mryvqdcxvlk3iqp4v4m2dq172dm47ig0"; depends=[doParallel foreach ggpubr missForest progress]; }; MESS = derive2 { name="MESS"; version="0.5.7"; sha256="0c3fs07szzr023pw92drd3a85vqp0ydfh30x235f0cssny1kxlj8"; depends=[geeM geepack ggformula ggplot2 glmnet kinship2 MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; MEclustnet = derive2 { name="MEclustnet"; version="1.2.2"; sha256="0rs58dafxngk2lkq14cy14ayjwgnz1gmi12jmi4z74sdj0b3h0gw"; depends=[e1071 ellipse latentnet MASS mvtnorm nnet vegan]; }; MEtest = derive2 { name="MEtest"; version="1.1"; sha256="0dxm3fs0lqnas70a1ckikvjp2ib9rqsknwcs9n9jfsmm1fqhxdpf"; depends=[statmod]; }; @@ -2761,6 +2775,7 @@ in with self; { MFAg = derive2 { name="MFAg"; version="1.8"; sha256="1kkcx6290ffk8g3amakaa5z5hz07z9iiqp2jxvma4pk85w6qay83"; depends=[]; }; MFDFA = derive2 { name="MFDFA"; version="1.1"; sha256="0nr78p6y4jpg1hrl0h7b7hyvwbr61paf85y3f2dx815x5hscmdhy"; depends=[numbers]; }; MFHD = derive2 { name="MFHD"; version="0.0.1"; sha256="0gb8y297y1x03wy46530psmlawyv4z5dydilk36qcmadlk1wx02k"; depends=[deldir depth depthTools fda_usc matrixStats]; }; + MFO = derive2 { name="MFO"; version="0.1.0"; sha256="0i8zkdwmngdq21f1rmn1fmgsr525xfzyjd7nxwy8p7fns6hsq31r"; depends=[dplyr ggplot2 magrittr minpack_lm openxlsx readxl stringr tibble tidyr]; }; MFPCA = derive2 { name="MFPCA"; version="1.3-9"; sha256="1cajh9aiirngc8p68kfll17mf2a874pk55cjrmxzr1l8p3ipd7s5"; depends=[abind foreach funData irlba Matrix mgcv plyr]; }; MFSIS = derive2 { name="MFSIS"; version="0.1.2"; sha256="0s4rswhc5aigp7f0yq91f131ghx2jjsmxikp9i2ycqg8bcza17nv"; depends=[Ball cli crayon doParallel dr foreach fs MASS reticulate survival]; }; MFT = derive2 { name="MFT"; version="2.0"; sha256="0n1xws3dw0650037qyqgp600p8cf098qa5hkbncdfdbl0w34qamy"; depends=[]; }; @@ -2810,7 +2825,7 @@ in with self; { MLDAShiny = derive2 { name="MLDAShiny"; version="0.1.0"; sha256="14n8pffzw5y7lq3qx1xly4jwm05cyvs14gn838h6y9yssb16xnmr"; depends=[caret DiscriMiner dplyr e1071 klaR MASS rhandsontable rmarkdown shiny]; }; MLDAShiny2 = derive2 { name="MLDAShiny2"; version="0.1.0"; sha256="1mx8js54mrrf16jriy467dysxpkcsza9fvdmpdbmxr5m3y564sc7"; depends=[caret DiscriMiner dplyr e1071 klaR MASS rhandsontable rmarkdown shiny]; }; MLDS = derive2 { name="MLDS"; version="0.4.901"; sha256="0zswlng1vksnx1m6ycna2hbqmzzcfpqz1wgy519fr0j87bqxks69"; depends=[MASS]; }; - MLDataR = derive2 { name="MLDataR"; version="0.1.2"; sha256="1b35rsd1scjkw0j7rbx5kn2p8h1g2i3bq84cj3sgf77cmc22cgb2"; depends=[caret ConfusionTableR dplyr parsnip ranger recipes rsample workflows]; }; + MLDataR = derive2 { name="MLDataR"; version="0.1.3"; sha256="13jfq4i0dz9nwkzfkc6lx52cni23q4369lmca7vd0jfzffn4zzvv"; depends=[caret ConfusionTableR dplyr ggplot2 OddsPlotty parsnip ranger recipes rsample varhandle workflows]; }; MLEcens = derive2 { name="MLEcens"; version="0.1-4"; sha256="0zlmrcjraypscgs2v0w4s4hm7qccsmaz4hjsgqpn0058vx622945"; depends=[]; }; MLGL = derive2 { name="MLGL"; version="0.6.5"; sha256="1qrqw39hghdlbrs0dkv38awrgwdf8lj95rhb3hixcc6nfb2lkr8j"; depends=[FactoMineR fastcluster gglasso MASS Matrix parallelDist]; }; MLGdata = derive2 { name="MLGdata"; version="0.1.0"; sha256="0ysvrnx8m903h99wr40zgg1c6d26m9vsh62zjxh8mvndh69ikzid"; depends=[]; }; @@ -2820,8 +2835,6 @@ in with self; { MLModelSelection = derive2 { name="MLModelSelection"; version="1.0"; sha256="1qfy2rfx2nvkwisl9wwllqsq2qhqzsdmrh90z5zn5qs07d0305wn"; depends=[MASS Rcpp RcppArmadillo RcppDist]; }; MLMusingR = derive2 { name="MLMusingR"; version="0.1.0"; sha256="1yq5ifp12k1pd59s5m1306934f4f2l9vlhqlfg22vcr7l9pqkw9s"; depends=[lme4 Matrix nlme]; }; MLPUGS = derive2 { name="MLPUGS"; version="0.2.0"; sha256="1yda37073g640g1qrkjrwa8hbyq6bjlcw3wpznx0bk5h0639bc0s"; depends=[]; }; - MLRShiny = derive2 { name="MLRShiny"; version="0.1.0"; sha256="06zcyz8l4754sjbcql3jd3nq1d2lgj92p5h2bh708z52mww71isw"; depends=[corrgram dplyr forecast psych QuantPsyc shiny shinyAce]; }; - MLRShiny2 = derive2 { name="MLRShiny2"; version="0.1.0"; sha256="1ygamp0ldz1i0w2xyi205rpd1gd5asw61l36z06j41ghdyiz1lww"; depends=[corrgram dplyr forecast psych QuantPsyc shiny shinyAce]; }; MLVSBM = derive2 { name="MLVSBM"; version="0.2.2"; sha256="0cxjk89i1pjq829168ad30dw73x65ywsc4d6vj6q6wlg746a1izf"; depends=[ape blockmodels cluster magrittr R6]; }; MLZ = derive2 { name="MLZ"; version="0.1.3"; sha256="0yj9241k3yk8qy6w2q26gwbj9b9qynv3s3jpyfxixvkc9kji3wc2"; depends=[dplyr ggplot2 gplots RcppEigen reshape2 TMB]; }; MLeval = derive2 { name="MLeval"; version="0.3"; sha256="1g2w5lrr7199n4zyaalbp9xdgl858hdg1pqr3rpd7v5fmamawc69"; depends=[ggplot2]; }; @@ -2904,8 +2917,8 @@ in with self; { MSRDT = derive2 { name="MSRDT"; version="0.1.0"; sha256="1i35zsip6p177k9pnbmvkjdc1hpr6nclhbx2sfah95ls5v6xnzz8"; depends=[dplyr gtools reshape2]; }; MSSQL = derive2 { name="MSSQL"; version="1.0.0"; sha256="15glgn2dr1yygxps0mx68435zqc2hi4hvgr4rvgrwyxdnlm5g35y"; depends=[RODBC]; }; MST = derive2 { name="MST"; version="2.2"; sha256="0p833nyq9p0r0hy02f4sy6gv1wm9flj3dxkv73ihy8503r89bbzz"; depends=[Formula MASS partykit survival]; }; - MSbox = derive2 { name="MSbox"; version="1.4.4"; sha256="00fh7qb8yj8b8yfipwvrly2340il3aygzm44sqbwq2684p8ivw36"; depends=[crayon ggfortify ggplot2 plotly reshape2 stringr xml2]; }; - MSclassifR = derive2 { name="MSclassifR"; version="0.1.0"; sha256="1b5giaqspnw6blpmmnvx9gzqa7hk006qhrmam6xz6716m2ay6ns0"; depends=[caret dplyr e1071 fuzzyjoin ggplot2 glmnet MALDIquant MALDIquantForeign MALDIrppa metap mixOmics nnet reshape2 VSURF xgboost]; }; + MSbox = derive2 { name="MSbox"; version="1.4.6"; sha256="1wlfbkjsw2bzznh6fwhfllgnj80zpfab82x43a83k3mjd41rf9f9"; depends=[crayon ggfortify ggplot2 plotly reshape2 stringr xml2]; }; + MSclassifR = derive2 { name="MSclassifR"; version="0.2.0"; sha256="1450i3f3f02sp6bnvvwgj4r64bfkjcb5dbcyy5src3lmly6d6jdi"; depends=[caret dplyr e1071 fuzzyjoin ggplot2 glmnet MALDIquant MALDIquantForeign MALDIrppa metap mixOmics nnet reshape2 VSURF xgboost]; }; MScombine = derive2 { name="MScombine"; version="1.4"; sha256="0s3gbf3s5mf00d5mkbqhd9wwnyps7qb4r3zbal8j8nsaspql9nd3"; depends=[plyr]; }; MSiP = derive2 { name="MSiP"; version="1.3.7"; sha256="1n8yl5icd3qkpmx2knxsp4g6jvkbg6hl82jxg9apxkx4nmsvkawz"; depends=[caret dplyr e1071 magrittr mice plyr pROC PRROC ranger tibble tidyr]; }; MSwM = derive2 { name="MSwM"; version="1.5"; sha256="0ny5apvww1537qhiwb3f8x173rh7mypvgpw0i46dkvn897i0dq36"; depends=[nlme]; }; @@ -2915,7 +2928,7 @@ in with self; { MTE = derive2 { name="MTE"; version="1.0.1"; sha256="0ybzf8fsysxld9d17jh1wggglaa58n5szynnrhif12cifgcrl2dx"; depends=[glmnet quantreg]; }; MTLR = derive2 { name="MTLR"; version="0.2.1"; sha256="070121qn7vmxmxgvzv7ymhk19j9kxks4xa7qpd8vkc2rp3ara4cp"; depends=[Rcpp RcppArmadillo survival]; }; MTPS = derive2 { name="MTPS"; version="1.0.1"; sha256="1jdlw943ywmrp64w1qrjqymqjh2jahnq0i5px8af1l3msznj20x4"; depends=[class e1071 glmnet MASS rpart]; }; - MTS = derive2 { name="MTS"; version="1.0.3"; sha256="1v1pid42a7jw4qrvp2y3pqzfn6vcldfkgvny5c6z8bsrjlc9ah8n"; depends=[fBasics fGarch mvtnorm Rcpp]; }; + MTS = derive2 { name="MTS"; version="1.1.1"; sha256="0mb7h4h94a2x104ybkg9836k3szdimlcdccwxjc5naarxhdifv60"; depends=[fBasics fGarch mvtnorm Rcpp RcppEigen]; }; MTSYS = derive2 { name="MTSYS"; version="1.2.0"; sha256="04dkan3hxl3difflskp7d1lw1bvxhg4s28ssy2v4m7z7wbpj3v1m"; depends=[]; }; MUACz = derive2 { name="MUACz"; version="2.1.0"; sha256="1d771vb2aimr87kyqj7zkmwarmxcxzbh7mvr396pf2zr3h8wi30c"; depends=[dplyr epiDisplay ggplot2]; }; MUS = derive2 { name="MUS"; version="0.1.6"; sha256="0xid624rz0mvd03iy7ydvmx7gkscvsg4kdbaf2nji54ahai3pmn3"; depends=[]; }; @@ -2937,7 +2950,7 @@ in with self; { MXM = derive2 { name="MXM"; version="1.5.2"; sha256="0h95v74sk0c10i1rvbbl6f98spv86jfz7xji3d3wd1v4zacq3hhz"; depends=[bigmemory coxme doParallel dplyr energy foreach geepack Hmisc knitr lme4 MASS nnet ordinal quantreg relations Rfast Rfast2 survival visNetwork]; }; MaOEA = derive2 { name="MaOEA"; version="0.6.2"; sha256="0s8jvp7821mb6xff8xwnh78mhz4qfrbk4g7sp4dfnm2ii7ah9c6b"; depends=[e1071 gtools lhs MASS nnet nsga2R pracma randtoolbox reticulate stringr]; }; MaXact = derive2 { name="MaXact"; version="0.2.1"; sha256="1n7af7kg54jbr09qk2a8gb9cjh25cnxzj2snscpn8sr8cmcrij0i"; depends=[mnormt]; }; - MachineShop = derive2 { name="MachineShop"; version="3.2.0"; sha256="1m3p2m19dl2z9rlmd9si67xzc592y9gym9mn919cdgsy3zrif4ld"; depends=[abind cli dials foreach ggplot2 kernlab magrittr Matrix nnet party polspline progress Rcpp recipes rlang rsample Rsolnp survival tibble]; }; + MachineShop = derive2 { name="MachineShop"; version="3.3.0"; sha256="1xrj6c0bryd2dldh2npaqznzvy4588jx4lplhsgffn07j4z0wz9g"; depends=[abind cli dials foreach ggplot2 kernlab magrittr Matrix nnet party polspline progress recipes rlang rsample Rsolnp survival tibble]; }; Maeswrap = derive2 { name="Maeswrap"; version="1.7"; sha256="0cnnr5zq7ax1j7dx7ira7iccqppc6qpdjghjarvdb2zj0lf69yyb"; depends=[geometry lattice rgl stringr]; }; MajKMeans = derive2 { name="MajKMeans"; version="0.1.0"; sha256="1zphrxyx3jd6rnh1y1qnc6bip34kfqk1a5ms4ps39gfngznh482m"; depends=[MASS]; }; MakefileR = derive2 { name="MakefileR"; version="1.0"; sha256="1pfjic2lsar8ghbb6byr4rqrs30qrgfih092z4rxdpsiwkk3y7l1"; depends=[magrittr]; }; @@ -2962,7 +2975,7 @@ in with self; { MatManlyMix = derive2 { name="MatManlyMix"; version="1.1.1"; sha256="1d2vd5b9lirdybjclxh0nn4mghq64qjj4l8vnj95cni5pfa18a2c"; depends=[]; }; MatSkew = derive2 { name="MatSkew"; version="0.1.5"; sha256="019v2b1r0bvw84xs50smjb3jdz7gd2adz5d84xd8zq43lnml96d1"; depends=[]; }; MatTransMix = derive2 { name="MatTransMix"; version="0.1.15"; sha256="1s2wmhiqn024x9l217xak3wp3dbd3mfrih70xc5mc1b4555f2fbm"; depends=[mvtnorm]; }; - MatchIt = derive2 { name="MatchIt"; version="4.3.3"; sha256="1gqcfzicvwd8j9snky0alsx6rmwjjchg1qz41lfqkdpf5cx90zkx"; depends=[backports Rcpp RcppProgress]; }; + MatchIt = derive2 { name="MatchIt"; version="4.3.4"; sha256="052dv7zk156qlrg5j4kjzr3mryj1g7cmbc5zal7vky6ss87ahid6"; depends=[backports Rcpp RcppProgress]; }; MatchLinReg = derive2 { name="MatchLinReg"; version="0.7.3"; sha256="1si0zn6vlgyj08841hfjx8an96a8ipnawl4zbalabmpy7r5bfwx8"; depends=[Hmisc Matching]; }; MatchThem = derive2 { name="MatchThem"; version="1.0.1"; sha256="1g3vzbxrbmgmxlnn6i2i1wdk949i547ywgxcw05na71kc1nvwvfd"; depends=[MatchIt mice rlang survey WeightIt]; }; Matching = derive2 { name="Matching"; version="4.9-11"; sha256="123np8gwjrbmkl65kj7qfa52i9msnkjyhvj4pwwqh5mkca2clw8w"; depends=[MASS]; }; @@ -2980,21 +2993,21 @@ in with self; { MaxentVariableSelection = derive2 { name="MaxentVariableSelection"; version="1.0-3"; sha256="1cmxfdkm5k85b4ivlfy5521hkfj0gq2pb1qlxxklh0fprw87kp9c"; depends=[ggplot2 raster]; }; MaximinInfer = derive2 { name="MaximinInfer"; version="1.0.0"; sha256="1m6xb4blpahgm7b4h96rdg2qakgn893sfjk45flxnvn8gipbwlrh"; depends=[CVXR glmnet intervals MASS SIHR]; }; MazamaCoreUtils = derive2 { name="MazamaCoreUtils"; version="0.4.10"; sha256="0085miwwda387k33hf6l8p3f0pp8714nq0whzmf89l3yn932ai33"; depends=[devtools digest dplyr futile_logger lubridate magrittr purrr rlang rvest stringr tibble xml2]; }; - MazamaLocationUtils = derive2 { name="MazamaLocationUtils"; version="0.3.1"; sha256="1aiyaz2svh93dp076hvib25agiwq7vydmj6gqqjxbknhx63kj769"; depends=[dplyr geodist httr jsonlite leaflet lubridate magrittr MazamaCoreUtils MazamaSpatialUtils readr rlang stringr tidygeocoder]; }; + MazamaLocationUtils = derive2 { name="MazamaLocationUtils"; version="0.3.3"; sha256="1ysdqrsifxf547i9gpbssd801sxh11cyvahkziz0zqwpcp301424"; depends=[dplyr geodist httr jsonlite leaflet lubridate magrittr MazamaCoreUtils MazamaSpatialUtils readr rlang stringr tidygeocoder]; }; MazamaRollUtils = derive2 { name="MazamaRollUtils"; version="0.1.3"; sha256="1433xy64n3wpxg9d0jlwdfp8hlvmq0ndg3fv6kfxq3pasm600jgc"; depends=[Rcpp]; }; MazamaSpatialPlots = derive2 { name="MazamaSpatialPlots"; version="0.1.2"; sha256="1gkxq6lnvdv24nvc34fmxz4qilzljxcls1lq29a5ag67dffz7kcj"; depends=[dplyr magrittr MazamaCoreUtils MazamaSpatialUtils rlang sf sp tmap]; }; MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.7.6"; sha256="07qr6cwa29brsp567vjhfv8pkqijxhhz98bxvagrpjj5gbx1179s"; depends=[cleangeo countrycode dplyr magrittr MazamaCoreUtils rgdal rgeos rlang rmapshaper sp stringr]; }; + MazamaTimeSeries = derive2 { name="MazamaTimeSeries"; version="0.2.2"; sha256="1snx71jcv9q1fw7njfccd0lvgi3mim6sahzcnc6136pblnjs29kg"; depends=[dplyr geodist lubridate magrittr MazamaCoreUtils readr rlang stringr]; }; Mcomp = derive2 { name="Mcomp"; version="2.8"; sha256="1wz5fr3dhxn4s0qvxm2mzq9dbz3x0vgh6pixjrgk9d4i9w2p7s60"; depends=[forecast ggplot2]; }; MeTo = derive2 { name="MeTo"; version="0.1.0"; sha256="14hdyh3p3q8yb9w2li2y9pc356jnymsn6n2750zdsrh52b751lpm"; depends=[lubridate]; }; MedDietCalc = derive2 { name="MedDietCalc"; version="0.1.1"; sha256="11q1yn6l697qa33wqik9y9lji39r6pph109yxkkprg9p80c187xy"; depends=[]; }; MedLEA = derive2 { name="MedLEA"; version="1.0.1"; sha256="0lw3m0wdsiypkyvpiacj4k9534x9clna38pwr4mrdy09hc435q3j"; depends=[patchwork tidyverse tm wordcloud2]; }; - MedOr = derive2 { name="MedOr"; version="0.1"; sha256="1rwc14s16lnzgb78ac2017hv9pss7zw7nw3y7vrvq1qx4fgiw6f8"; depends=[]; }; MedSurvey = derive2 { name="MedSurvey"; version="1.1.1.3.0"; sha256="11lkli2arl5w2aizzd93fb6xsy30000nf3qc08qirrm07rwypaly"; depends=[lavaan Matrix survey]; }; MediaK = derive2 { name="MediaK"; version="1.0"; sha256="19cmxl2wksw9kvjsfn1m4nkr5gpcx6bk0sqrabj1n0dla1l32v2a"; depends=[Rcpp RcppEigen]; }; Mediana = derive2 { name="Mediana"; version="1.0.8"; sha256="0j1ikc2iaxl70134v0gijj2i2g0xgjafvn8rc108r9fhm8rpw564"; depends=[doParallel doRNG foreach MASS mvtnorm survival]; }; MedianaDesigner = derive2 { name="MedianaDesigner"; version="0.7"; sha256="177wzlq8z0b5qw2vpzy224i11a9x9179ni81bmxi8cvza4rx211h"; depends=[devEMF doParallel doRNG flextable foreach mvtnorm officer Rcpp RcppEigen RcppNumerical shiny shinydashboard shinyMatrix]; }; Mega2R = derive2 { name="Mega2R"; version="1.0.9"; sha256="1wpn03csv88958ppg4idwidcdvr1gf3bps4c0sf5z3ri78awb28f"; depends=[AnnotationDbi DBI famSKATRC gdsfmt GenomeInfoDb kinship2 pedgene Rcpp RSQLite SKAT]; }; - MendelianRandomization = derive2 { name="MendelianRandomization"; version="0.5.1"; sha256="1qi5v4m19025zcigl6wxmj3vi6zjlzgsm6cj75kywq2qabrzk2fw"; depends=[ggplot2 glmnet iterpc knitr Matrix plotly quantreg rjson rmarkdown robustbase]; }; + MendelianRandomization = derive2 { name="MendelianRandomization"; version="0.6.0"; sha256="0qf2kb04ia5rdasvs34ziwyan5k327gi45frjkhmi5qsz64z51bg"; depends=[ggplot2 glmnet iterpc knitr Matrix plotly quantreg rjson rmarkdown robustbase]; }; Mercator = derive2 { name="Mercator"; version="1.1.1"; sha256="0jg5dm65smq67k35p8acqd5kdsv7py8plaamagbsc84617r0iaik"; depends=[ClassDiscovery cluster dendextend flexmix igraph KernSmooth kohonen Polychrome Rtsne Thresher umap]; }; MetABEL = derive2 { name="MetABEL"; version="0.2-0"; sha256="0rqjv85mgswrbbp8b8ip6cdmz0cvfy9lm5mcr8a7h38rzgx3g3i3"; depends=[]; }; MetAlyzer = derive2 { name="MetAlyzer"; version="0.1.0"; sha256="1mqc2037q71n1k7ncym52vn0cc5ndsxq4r87k492lp1b3i7h1wi3"; depends=[agricolae dplyr openxlsx rlang tibble tidyr]; }; @@ -3024,14 +3037,13 @@ in with self; { MetabolomicsBasics = derive2 { name="MetabolomicsBasics"; version="1.2"; sha256="0gd93l9rm00x9g6ffppywpbccmhxgl4s4z4ba7al8lpjval9srzw"; depends=[C50 caret e1071 mixOmics pcaMethods plyr rlang ropls rpart]; }; MetaheuristicFPA = derive2 { name="MetaheuristicFPA"; version="1.0"; sha256="096k866mgrdgj55rzvdj080z80hzlj0667mydpz7gjaqdfriw8jg"; depends=[Rcpp RcppArmadillo]; }; Metatron = derive2 { name="Metatron"; version="0.1-1"; sha256="0apz2k3za19px1bcg4ls0axaljrpxnqhs86b6s862c370sspc1x8"; depends=[lme4 Matrix mpt]; }; - Meth27QC = derive2 { name="Meth27QC"; version="1.1"; sha256="0ad30svs2kjzmmyvcm0jmv64iyq7slp1x1xl35h2rv1b6zbd4658"; depends=[gplots]; }; MethComp = derive2 { name="MethComp"; version="1.30.0"; sha256="1vmwb4zw4gm2x0j2nzm2vjfj7x19ws8njr6dcglzjpbbha7nxjp6"; depends=[coda nlme rjags]; }; MethodCompare = derive2 { name="MethodCompare"; version="0.1.2"; sha256="1nxr2fgmfixjkdparavi156qqqchjwaxpjk9i2xgc1yhp1p01pll"; depends=[nlme]; }; Methplot = derive2 { name="Methplot"; version="1.0"; sha256="0aaqss9zfn55qi45jffxkksnkw510npjnkygafx49vl77bkagqh5"; depends=[ggplot2 reshape]; }; MethylCapSig = derive2 { name="MethylCapSig"; version="1.0.1"; sha256="16ch9aldr6a9jn42h387n7qvnzs0yx28f2yj6xq0kp476q7rf4ql"; depends=[geepack]; }; Metrics = derive2 { name="Metrics"; version="0.1.4"; sha256="0fh8qbjlwzagh272lgwr4bxcqcjb1qpz53mgs8rzlvncax6nk5bk"; depends=[]; }; MetricsWeighted = derive2 { name="MetricsWeighted"; version="0.5.4"; sha256="1hv2bgd64km303l09kva0pa9wx95f82qa9c4zl8nrmfhi2dvckqh"; depends=[]; }; - MfUSampler = derive2 { name="MfUSampler"; version="1.0.4"; sha256="0i5siq1jacxbfvakb97qnj3h7pk471rrx8ckwm0d8nl3j586s36y"; depends=[ars coda HI]; }; + MfUSampler = derive2 { name="MfUSampler"; version="1.0.6"; sha256="0lw60dnlkcs59wf5yzqj3yq8k529s5mrjj33nyvzqgqqmln9v1x8"; depends=[ars coda HI]; }; MiDA = derive2 { name="MiDA"; version="0.1.2"; sha256="144gxsxqljzskxsw5k0y69ix0pxlfvyyznxkjpf2ng4l47pg11z5"; depends=[caret gbm genefilter limma preprocessCore pROC SQN]; }; MiRKAT = derive2 { name="MiRKAT"; version="1.2.1"; sha256="1ypxs6p8jzd2y5rxbfrr2z1xib6im9i58wvcz4cqcgpw298w7ard"; depends=[CompQuadForm GUniFrac lme4 MASS Matrix mixtools PearsonDS permute quantreg survival]; }; MiRNAQCD = derive2 { name="MiRNAQCD"; version="1.1.2"; sha256="1alpa7xsk669rsh0s7kjdnk1ymlfm81rw011pk29fi7p2jc505iv"; depends=[ggplot2 pROC]; }; @@ -3041,7 +3053,7 @@ in with self; { MicSim = derive2 { name="MicSim"; version="1.1.0"; sha256="0nkprbb9lgnfzl1bj0k4rkd7v8g35cvhl9bqa91q2lc2rimzfl20"; depends=[chron rlecuyer snowfall]; }; MicroDatosEs = derive2 { name="MicroDatosEs"; version="0.8.2"; sha256="0k0hmi3ciipizmgjw1i5rrsg34yx21s1msn40vc4qc9s1n4wd8dl"; depends=[readr]; }; MicroMacroMultilevel = derive2 { name="MicroMacroMultilevel"; version="0.4.0"; sha256="1q5cyqr4hdl1wp2isk6p4p084i83kg6hd406wdp1nj9lv5i0xvgw"; depends=[]; }; - MicroMoB = derive2 { name="MicroMoB"; version="0.0.9"; sha256="1a4abp2mb13dknqb7j0p0ch6insh3q15255zgf84ws5a70wn5rwf"; depends=[abind extraDistr]; }; + MicroMoB = derive2 { name="MicroMoB"; version="0.0.11"; sha256="1a3fknakn98k73mkfk81fypznhhr2npd9w34s57yaqj5z3c4i5xj"; depends=[abind extraDistr httpuv jsonlite plumber]; }; MicroNiche = derive2 { name="MicroNiche"; version="1.0.0"; sha256="166ci4crkwnnh05rhs5hyrljgm4cdf7gp0ff8kjxjmd60byw80mz"; depends=[ggplot2 reshape2]; }; MicroSEC = derive2 { name="MicroSEC"; version="1.1.3"; sha256="1imdxm15f792xw5kc9lhry5jsw739j6y3f2fs64abj22hqxfwypi"; depends=[BiocGenerics Biostrings data_table dplyr GenomeInfoDb GenomicAlignments gtools magrittr openxlsx R_utils Rsamtools stringr tidyr]; }; MicrobiomeStat = derive2 { name="MicrobiomeStat"; version="1.1"; sha256="1j5sar85a1gksc83pc4ypxwb0c7whxglx069zarphrgqfazcr1m4"; depends=[foreach ggplot2 ggrepel lmerTest MASS Matrix matrixStats modeest phyloseq statmod]; }; @@ -3052,6 +3064,7 @@ in with self; { Miney = derive2 { name="Miney"; version="0.1"; sha256="0sgln0653rgglinr8rns5s2az0lgyp9slmynyhhhs265grkhrfj0"; depends=[]; }; Minirand = derive2 { name="Minirand"; version="0.1.3"; sha256="19lib0qh3xfzvpgsskl3yypmjygss0w7pimz0136av0px5b4jran"; depends=[]; }; MisRepARMA = derive2 { name="MisRepARMA"; version="0.0.2"; sha256="0bay8grq49yin9yy9h9ynb8flsbrb10h4lp7sdzp9ih5b9w21y7z"; depends=[boot mixtools tseries]; }; + MitoHEAR = derive2 { name="MitoHEAR"; version="0.1.0"; sha256="1lb36w374wjp6f9ydkas21rwc2shlav1xq2rfzig1k034fkva8bj"; depends=[Biostrings circlize ComplexHeatmap dynamicTreeCut GenomicRanges ggplot2 gridExtra IRanges magrittr mcclust rdist reshape2 rlist Rsamtools]; }; MittagLeffleR = derive2 { name="MittagLeffleR"; version="0.4.1"; sha256="1qlz418im27v7q3xk09a2w3zdx7ky5imcyi3kpg1s3bz5zx57p2f"; depends=[stabledist]; }; MixAll = derive2 { name="MixAll"; version="1.5.1"; sha256="1jsh29ygy1n7lbz93ks725li9hnvfa0kp1qik13m72nmgw7g7q5a"; depends=[Rcpp rtkore]; }; MixGHD = derive2 { name="MixGHD"; version="2.3.6"; sha256="0vx32ay7r8d22j53fsi6ff8l2zg97524dy7ir59ldafjfn15nc7k"; depends=[Bessel cluster e1071 ghyp MASS mixture mvtnorm numDeriv]; }; @@ -3062,8 +3075,8 @@ in with self; { MixSAL = derive2 { name="MixSAL"; version="1.0"; sha256="15dymyzfs3bwskaf6xndj291g6nhw7k1q93y1cba55a6fdjh5qz9"; depends=[MASS]; }; MixSIAR = derive2 { name="MixSIAR"; version="3.1.12"; sha256="07wiv7x2c9mhqk37zndxvdb76m9shizc48qz2bp2f4g5z9hciid7"; depends=[bayesplot coda ggmcmc ggplot2 lattice loo MASS MCMCpack R2jags RColorBrewer reshape reshape2 splancs]; }; MixSim = derive2 { name="MixSim"; version="1.1-5"; sha256="16l27y8wgy44zpavl3as0qdm1csjrmh2iy7idd2j6l8cba8z2l0i"; depends=[MASS]; }; - MixTwice = derive2 { name="MixTwice"; version="1.1"; sha256="1vzy31aaxyfr28xsk9358laqg429lnrkxdmm63maz15wcbxha9zq"; depends=[alabama ashr fdrtool]; }; - MixedIndTests = derive2 { name="MixedIndTests"; version="0.1.5"; sha256="1vlkpm1qx3mh3c08d0hwyzdap8s8kpdiiik49yphgmqgb8xg7i9n"; depends=[doParallel foreach ggplot2 survey]; }; + MixTwice = derive2 { name="MixTwice"; version="2.0"; sha256="11j591z1pnql84sfczvry7mg4hs0jghgp170y5j5wwhs7l5kc7r7"; depends=[alabama ashr fdrtool Iso]; }; + MixedIndTests = derive2 { name="MixedIndTests"; version="0.8.0"; sha256="0hafcz05042nhl8qwrjhr04k6xwz4pkd90ca7vcyijcay2nvx20z"; depends=[copula doParallel foreach ggplot2 survey]; }; MixedPoisson = derive2 { name="MixedPoisson"; version="2.0"; sha256="0g5mpzj0wda6g46q3cg5mm3x4dvpz9gdclzn2m17l62lzny2i10p"; depends=[gaussquad MASS Rmpfr]; }; MixedPsy = derive2 { name="MixedPsy"; version="1.1.0"; sha256="1iz3cl19xlznzbqxvichbjhyhams4v9611p9094r6q5fpmf71p88"; depends=[beepr boot brglm ggplot2 lme4 Matrix mnormt]; }; MixedTS = derive2 { name="MixedTS"; version="1.0.4"; sha256="0gwcg115idbcm5llgzqsygvqgshq8dywawxkaddsmw4sbbhj4555"; depends=[MASS]; }; @@ -3106,24 +3119,24 @@ in with self; { MortalityLaws = derive2 { name="MortalityLaws"; version="1.9.3"; sha256="12sfc4lhp01caknpw25gmchh8gv2wjlgpq0lby7iayl9lnsg1x92"; depends=[minpack_lm pbapply RCurl tidyr]; }; MortalityTables = derive2 { name="MortalityTables"; version="2.0.3"; sha256="0ldj8gq5xpbxkjcvdysrcq7a0xv7caz1rc8v6bpn5hkr866lqnmw"; depends=[ggplot2 pracma scales]; }; MplusAutomation = derive2 { name="MplusAutomation"; version="1.0.0"; sha256="0hkz76gmmz1cpsjmz7jscwvdc8aar1g9468b5cr21zyl5slna0cg"; depends=[boot checkmate coda data_table digest fastDummies ggplot2 gsubfn lattice pander plyr rlang texreg xtable]; }; - MplusTrees = derive2 { name="MplusTrees"; version="0.1.1"; sha256="1s119p1fgr27rkh671zpzbfnd368m0s1607r8xwgjm0y5ncxwkv7"; depends=[MplusAutomation nlme rpart rpart_plot]; }; + MplusTrees = derive2 { name="MplusTrees"; version="0.2.1"; sha256="0bc8663h746wxrb4x1b65k013byfpz80l9mz0090jwa3q710g506"; depends=[MplusAutomation nlme rpart rpart_plot]; }; Mqrcm = derive2 { name="Mqrcm"; version="1.2"; sha256="1alfv76b90frimihjcq8whzqkwvhnnw2fd92nrfpnfj5dw0b56f5"; depends=[Hmisc pch]; }; MrSGUIDE = derive2 { name="MrSGUIDE"; version="0.1.2"; sha256="1hd0lvvy12r6kxa64vwnjavyv2f7a9jqgjxgmlw86wwh5g09hvfd"; depends=[BH magrittr Rcpp RcppArmadillo yaml]; }; MsdeParEst = derive2 { name="MsdeParEst"; version="1.7"; sha256="1zhi1jr30sl7jpsw37lc3akfzixlhm9k2hjkha1pjy5fmd5lddlx"; depends=[MASS moments mvtnorm sde]; }; MtreeRing = derive2 { name="MtreeRing"; version="1.4.5"; sha256="1i6ljz950n9fpgci9b5777dg3b88ihhz8jvyw621hg218imswhxz"; depends=[bmp dplR dplyr imager jpeg magick magrittr measuRing png shiny shinydashboard shinyWidgets spatstat_geom tiff]; }; MuChPoint = derive2 { name="MuChPoint"; version="0.6.1"; sha256="15bqsc7bsjg55qxjwxh58bxbwz61a6wv4xxph994g4020b98l01x"; depends=[capushe Matrix Rcpp shiny]; }; MuFiCokriging = derive2 { name="MuFiCokriging"; version="1.2"; sha256="09p8wdmlsf21ibqyjigwdipcin3ij0naxcd035hqgfj76v20wiyv"; depends=[DiceKriging]; }; - MuMIn = derive2 { name="MuMIn"; version="1.43.17"; sha256="1ac78wg94j37ikwb8r1lxk6jlj3m804q94630i5vcm663p99cqdc"; depends=[Matrix nlme]; }; + MuMIn = derive2 { name="MuMIn"; version="1.46.0"; sha256="0290dn4vw082rp4ps324bdpbifzmjs4jqca9c33yky7004qwklik"; depends=[Matrix nlme]; }; MuViCP = derive2 { name="MuViCP"; version="1.3.2"; sha256="1wkiwdz4bblxf1zr57khljqkga9ks9aj1lnidvmhib94q6b8fnf4"; depends=[gtools MASS sm]; }; MullerPlot = derive2 { name="MullerPlot"; version="0.1.2"; sha256="0am5brdmbh2mw74fbw9nha6h4qlhj8psg3142mql1ad99bd0zg4w"; depends=[RColorBrewer]; }; MultAlloc = derive2 { name="MultAlloc"; version="1.2"; sha256="0c3sqfaa08s8mk4yz77kh6q6v9ic5xp52g9prfw1k2kv4nw1k2qd"; depends=[Rglpk]; }; MultBiplotR = derive2 { name="MultBiplotR"; version="1.3.30"; sha256="0cnn8m4yd2w0izbsvrlqgxif41554nq3hj7m169lxwxrb0csybcf"; depends=[car dae deldir dunn_test geometry GPArotation gplots Hmisc lattice MASS mirt mvtnorm optimr polycor rgl scales xtable]; }; - MultEq = derive2 { name="MultEq"; version="2.3"; sha256="0fshv7i97q8j7vzkxrv6f20kpqr1kp9v6pbw50g86h37l0jghj7r"; depends=[]; }; + MultEq = derive2 { name="MultEq"; version="2.4"; sha256="0x0mfmrfcjdv7v5nlakmjh2ilmgn15xgzc4qgm6djkif6565v46i"; depends=[]; }; MultIS = derive2 { name="MultIS"; version="0.6.2"; sha256="02ca1r8qfsl1b8rfawdn4xrlwhg5yab260rrsx8ckyv3v75knk8f"; depends=[cluster clv clValid dplyr foreach ggplot2 igraph ltm plyr poweRlaw RColorBrewer reshape2 rlang rmutil]; }; MultNonParam = derive2 { name="MultNonParam"; version="1.3.6"; sha256="034a6yx2z93llkg7m3f20ibajwc2m23i13jqsk3fpgzx6f1dnbfk"; depends=[ICSNP]; }; MultOrdRS = derive2 { name="MultOrdRS"; version="0.1-2"; sha256="0bra4z37njkcgah3a1k6mxcnmxq85188jywhgx3fdb1wnv5ic549"; depends=[Rcpp RcppArmadillo statmod]; }; MultSurvTests = derive2 { name="MultSurvTests"; version="0.2"; sha256="04crh4hbfhl8cr0faawv71lyabyilhxpg6i8sr9ki80982mbzcnd"; depends=[Rcpp RcppArmadillo Rdpack]; }; - MultiATSM = derive2 { name="MultiATSM"; version="0.0.1"; sha256="0p35is4kgpwxhmnmjsmphgy33dbj4f4jmysjmi75dbxbns129lig"; depends=[ggplot2 hablar pracma wrapr zoo]; }; + MultiATSM = derive2 { name="MultiATSM"; version="0.1.1"; sha256="0c9vjlpyn0gm46mwhcvni3vw9k5djbw3aiws1pz1aih93pdsyvrx"; depends=[ggplot2 hablar pracma wrapr zoo]; }; MultiBD = derive2 { name="MultiBD"; version="0.2.0"; sha256="1qjfr8hx8sr5m8370yzi09r8jnh3i6907wzj3v4h83vmjh81db71"; depends=[BH Rcpp RcppParallel]; }; MultiCNVDetect = derive2 { name="MultiCNVDetect"; version="0.1-1"; sha256="0mfisblw3skm4y8phfg4wa0rdchl01wccarsq79hv63y78pfhh13"; depends=[]; }; MultiFit = derive2 { name="MultiFit"; version="1.1.1"; sha256="086bnqp61mfanrhi7dqaq5j2ddg3rfiyms0f5wj34svcjal9wjvc"; depends=[data_table Rcpp RcppArmadillo]; }; @@ -3154,6 +3167,8 @@ in with self; { MulvariateRandomForestVarImp = derive2 { name="MulvariateRandomForestVarImp"; version="0.0.2"; sha256="0gbr44rwwb4nq2s4ix1ckfdjahsfx9sjfbww5wjcm1v68w6bk5ca"; depends=[MASS MultivariateRandomForest]; }; MvBinary = derive2 { name="MvBinary"; version="1.1"; sha256="1lrrxvphxv4gmlazx67q4bck9373nqylqgkwcjzwb52291a3zyiv"; depends=[mgcv]; }; My_stepwise = derive2 { name="My.stepwise"; version="0.1.0"; sha256="10wka6kzk8krwdsyjfnn78dfqflq4zg3vjkk0i2ywjm5vap6aqa5"; depends=[car lmtest survival]; }; + Mychisq = derive2 { name="Mychisq"; version="0.1.2"; sha256="0yf1xgrp5gajla7prb1524586662wnjjjkc1xpyim6zfjkg89rbr"; depends=[]; }; + N2H4 = derive2 { name="N2H4"; version="0.6.1"; sha256="00bbdy2f4bsb8b4j6n2zhmp7zif79yx14g4f4jylh1050r1y31rk"; depends=[dplyr httr jsonlite lubridate rvest tibble urltools]; }; N2R = derive2 { name="N2R"; version="1.0.1"; sha256="12bv7xx6j6222qgpv6g61i68017fz0x6fjg9a9k5yhgw3zk05hpk"; depends=[Matrix Rcpp RcppEigen RcppSpdlog]; }; NACHO = derive2 { name="NACHO"; version="1.1.0"; sha256="0ji9kcfbnsrn6h4p0y0ly5nwyfwh3y01wm80a7syg4mjj0nd4z0g"; depends=[cli crayon dplyr ggbeeswarm ggforce ggplot2 ggrepel knitr magrittr purrr rlang rmarkdown rstudioapi scales sessioninfo shiny shinyWidgets tibble tidyr]; }; NADA = derive2 { name="NADA"; version="1.6-1.1"; sha256="0jp4mqr77cx7q5lff84s6wb0dwjy9mi0jyhbjc5fsx50bdczc3v7"; depends=[survival]; }; @@ -3170,7 +3185,7 @@ in with self; { NBBttest = derive2 { name="NBBttest"; version="1.0.0"; sha256="165j4smwqz4yra3946nd7ssgfwf7wjpysn22yj0bml36qk9y6vs7"; depends=[gplots gtools]; }; NBDdirichlet = derive2 { name="NBDdirichlet"; version="1.3"; sha256="1657mqwn5i1b0g0gva387zl02vpymn98f71b0p7i7xv033mqnpqw"; depends=[]; }; NBDesign = derive2 { name="NBDesign"; version="2.0.0"; sha256="0593rh2lf8wlxzjmwh2xx3jsb6miqx0wipqw9di10cbxbf6binb1"; depends=[MASS PWEALL]; }; - NBLDA = derive2 { name="NBLDA"; version="1.0.0"; sha256="0sw84h1mgzhr6vmvxi4smk57r4gplg3kxq38gydcy6ckv2g8nzz2"; depends=[ggplot2]; }; + NBLDA = derive2 { name="NBLDA"; version="1.0.1"; sha256="0h71c3kgqaijpnrz2cx2k4311j61paxnj96kwpv2dcdy9rhkbwar"; depends=[ggplot2]; }; NBPSeq = derive2 { name="NBPSeq"; version="0.3.0"; sha256="0l4ylxhs2k9ww21jjqs67fygk92avdchhx2y1ixzl7yr2yh1y9by"; depends=[qvalue]; }; NBR = derive2 { name="NBR"; version="0.1.4"; sha256="1dkrknml2nkgya5hm4iai6ivxp4jmr8s794xiqcm7ih6mk8a0wj0"; depends=[nlme]; }; NBShiny = derive2 { name="NBShiny"; version="0.1.0"; sha256="0hcmdhj26hc3c8d5nb6yb7amv0rbdxywima0l0jqkxipx56idlcx"; depends=[caret dplyr e1071 rhandsontable rmarkdown shiny]; }; @@ -3185,7 +3200,7 @@ in with self; { NEONiso = derive2 { name="NEONiso"; version="0.5.3"; sha256="19w2za7f6vy1b2h4np4r1cpp9z3aha0485rh08zb3p5y15j1c021"; depends=[data_table dplyr httr lifecycle lubridate magrittr neonUtilities R_utils rhdf5 rlang tidyselect zoo]; }; NEff = derive2 { name="NEff"; version="1.1"; sha256="16ys1fi28kbzg3am9vz1c5pc9x0ac47pl6za04h63lspk99yplzk"; depends=[bit msm]; }; NEpiC = derive2 { name="NEpiC"; version="1.0.1"; sha256="11zf112xcsg3k93vks2fnsflw2v2d56a0bsjpd460d21k3gipfz8"; depends=[igraph PairedData]; }; - NFCP = derive2 { name="NFCP"; version="1.2.0"; sha256="1dav6h0bk4c787g5wskpsfqdbsgalq0xpbzq6nk1sg54g6wd76q2"; depends=[curl FKF_SP LSMRealOptions MASS mathjaxr numDeriv Rdpack rgenoud]; }; + NFCP = derive2 { name="NFCP"; version="1.2.1"; sha256="16dvk8jiyzd94lfif0nkwc0ix05is8bhyykaaa6p1irwgzk8cia4"; depends=[curl FKF_SP LSMRealOptions MASS mathjaxr numDeriv Rdpack rgenoud]; }; NFLSimulatoR = derive2 { name="NFLSimulatoR"; version="0.3.0"; sha256="0gmr47pzyys3d4kmmbxznhs3vsi83vb6xv16bhg0zljkdp80fp44"; depends=[data_table progress]; }; NFP = derive2 { name="NFP"; version="0.99.4"; sha256="1ybkkqdwq72inwyak5d2598xizfph5sg3zzb855l0kpxplcqnp2f"; depends=[apcluster dplyr ggplot2 graph igraph KEGGgraph magrittr plyr stringr tidyr]; }; NFWdist = derive2 { name="NFWdist"; version="0.1.0"; sha256="0833lg0pd763awrc6ibidwf2ldl79w9lmm5acq4bnpd2hzsx60l8"; depends=[]; }; @@ -3195,7 +3210,7 @@ in with self; { NHANES = derive2 { name="NHANES"; version="2.1.0"; sha256="0aphv3rakfcfrv2km1xyxpj1bxiazy6gwrvs7lyhxmq468fk4c9a"; depends=[]; }; NHLData = derive2 { name="NHLData"; version="1.0.0"; sha256="0dfqalccbkmqrn3h1z6s78l818c8sqn7d6yc8mg872ygmszryci7"; depends=[]; }; NHMM = derive2 { name="NHMM"; version="3.11"; sha256="1ynxk4dpllb3w8229dmxzjdmf0zh5cgmh3wa55d02disc6yhm77k"; depends=[BayesLogit MASS MCMCpack msm Rcpp]; }; - NHMSAR = derive2 { name="NHMSAR"; version="1.17"; sha256="149zzk8apl4zv60xagl8zk3zv1fnrbfijmlwn8c4vypvlfdsr981"; depends=[glasso lars ncvreg ucminf]; }; + NHMSAR = derive2 { name="NHMSAR"; version="1.19"; sha256="0xbnzq3zlpda1xcfiz1lsa5q5frvrsf87z3xc41fvk1n5viak5fk"; depends=[glasso lars ncvreg ucminf]; }; NHPoisson = derive2 { name="NHPoisson"; version="3.3"; sha256="1i6n59ckcxk1hwyz97jmnv4yb96ianjma6ka8lpz79ivs41jniad"; depends=[car]; }; NHSDataDictionaRy = derive2 { name="NHSDataDictionaRy"; version="1.2.5"; sha256="17jvyjxc28bmxadvcjhal4shklh24636zw6hrc7p7m71lbcw86aw"; depends=[dplyr httr magrittr purrr rvest stringr tibble xml2]; }; NHSRdatasets = derive2 { name="NHSRdatasets"; version="0.3.0"; sha256="1l4zrprnb3fsb2mibq8749a15xbvhn1g5yajbjf7gls81c8f2r7p"; depends=[tibble]; }; @@ -3206,7 +3221,6 @@ in with self; { NISTnls = derive2 { name="NISTnls"; version="0.9-13"; sha256="03a1c8a5dr5l5x4wbclnsh3vmx3dy7migfdzdx7d7p3s7hj3ibif"; depends=[]; }; NISTunits = derive2 { name="NISTunits"; version="1.0.1"; sha256="0km9l3k9p35sb1qrhrz4ijjsdihvsp6j7cz5kh46lgf7nn6xdk7a"; depends=[]; }; NITPicker = derive2 { name="NITPicker"; version="1.0.1"; sha256="00jmin7y1bp7a4a1qcvv3rkgiy9qij7gbkxcdgpiyzcs6aaif59z"; depends=[fda fda_usc fdasrvf]; }; - NLMR = derive2 { name="NLMR"; version="1.1"; sha256="1m08nm71wbam6d8nj8akwqrm6nq5bvm3v76kdlasdgs7v36xzri6"; depends=[checkmate dplyr fasterize igraph RandomFields raster Rcpp sf spatstat_core spatstat_geom tibble]; }; NLP = derive2 { name="NLP"; version="0.2-1"; sha256="1dpj04fmld2lnhg072ahgjbhmciqqy9h1lrz0wf32mr7mm9s9sh5"; depends=[]; }; NLPclient = derive2 { name="NLPclient"; version="1.0"; sha256="0jhlz9mqziyk5574vl8qjjs4g75x27rlk90wvzm3q9kjrjyvad35"; depends=[curl NLP xml2]; }; NLPutils = derive2 { name="NLPutils"; version="0.0-5"; sha256="1jxxly85iajzb9qckkkar0przyxv005cyvry0qi5dkzhbyl5k490"; depends=[NLP qdap SnowballC]; }; @@ -3222,7 +3236,7 @@ in with self; { NMdata = derive2 { name="NMdata"; version="0.0.11"; sha256="0yzjrx885zq7pnajm3s2nxjcza8pcxbn0ni60bwvr85havcs1wpj"; depends=[data_table]; }; NMproject = derive2 { name="NMproject"; version="0.6.7"; sha256="0sri85n5i5w56bmbcg3yca3r5lh9j59gwwjidwhvxvxbg6czw6n7"; depends=[crayon diffobj dplyr DT dygraphs git2r htmltools lifecycle magrittr miniUI reshape2 rlang rmarkdown rprojroot rstudioapi shiny stringr tidyr usethis]; }; NNMIS = derive2 { name="NNMIS"; version="1.0.1"; sha256="1w2i4xlx249p589yqdgbx1ra406ycxw729vbk1lqadbn71m6blaz"; depends=[survival]; }; - NNS = derive2 { name="NNS"; version="0.8.4.1"; sha256="0dlsdmbrcgiz16vj2kljcw1h7ds63mij2nqrczqfl3fkxsfkp5ir"; depends=[caret data_table doParallel dtw dynlm meboot Quandl Rfast rgl stringr tdigest tseries zoo]; }; + NNS = derive2 { name="NNS"; version="0.8.5"; sha256="0yf0r6zvxydwj883ahvp5mx2pr9qifrkiizd0mnc8w7g6cmw7bm8"; depends=[caret data_table doParallel dtw dynlm meboot Quandl Rfast rgl stringr tdigest tseries zoo]; }; NNTbiomarker = derive2 { name="NNTbiomarker"; version="0.29.11"; sha256="0sqlf7vzhpmq2g98c2qlrcqn3ba4ycfxbczgcjiqqhqsvgkpacc1"; depends=[magrittr mvbutils shiny stringr xtable]; }; NNbenchmark = derive2 { name="NNbenchmark"; version="3.2.0"; sha256="086smk3xy6p6ianw41h3gx806q7h28v1dg9d3khsrwyyf9gn8xyp"; depends=[pkgload R6]; }; NO_PING_PONG = derive2 { name="NO.PING.PONG"; version="0.1.4"; sha256="10q5h9kafni3wlnn1gdsgd9a90km5snrjz1nr0ilafmdvw9vg6v1"; depends=[MASS MCMCglmm metafor]; }; @@ -3237,7 +3251,6 @@ in with self; { NPIstats = derive2 { name="NPIstats"; version="0.1.0"; sha256="0hbx2mzz1z2158c943dqfn0pq1aybj1xxy55mmvld4djr5zrlz9w"; depends=[dplyr]; }; NPMLEcmprsk = derive2 { name="NPMLEcmprsk"; version="3.0"; sha256="0nm88fsxgrfk0j0lmir57bhxy4p8ah503gpj6jdlvjqw862jigiq"; depends=[]; }; NPMLEmix = derive2 { name="NPMLEmix"; version="1.2"; sha256="056jb3kz34lajryfbzkhq0g372iib6h8mr74mq18xkarp5blgmsl"; depends=[CAMAN dplyr FDRreg Hmisc latexpdf Matrix mosaic pbapply pracma progress R_utils Rcpp REBayes Rmosek spatstat]; }; - NPMVCP = derive2 { name="NPMVCP"; version="1.1"; sha256="13jpm46abwziq8859jhl6hg1znk3ws1q7g4vlr2jyri3qa6h22dd"; depends=[]; }; NPP = derive2 { name="NPP"; version="0.4.0"; sha256="1891s5j39i728vqs6xz1bywnvgalsbiknn3yqsg71zlhj3h8ikll"; depends=[]; }; NPRED = derive2 { name="NPRED"; version="1.0.6"; sha256="1mdnjfh100hckyqkyq4651ymi6lzbgfy6dy4xjxbal2q5rn6swvl"; depends=[]; }; NPS = derive2 { name="NPS"; version="1.1"; sha256="02idja149a2sj97sks4lhsaflpifyxi6n0rjlcq9993f84szfgsi"; depends=[]; }; @@ -3256,15 +3269,16 @@ in with self; { NatureSounds = derive2 { name="NatureSounds"; version="1.0.4"; sha256="1l8c0zn0bbrcdf098pcbr8fvrl614cl6iq820q0sd7sr36n3k1jr"; depends=[knitr tuneR]; }; NbClust = derive2 { name="NbClust"; version="3.0"; sha256="1vwb48zy6ln1ddpqmfngii1i80n8qmqyxnzdp6gbaq96lakl3w3c"; depends=[]; }; NegBinBetaBinreg = derive2 { name="NegBinBetaBinreg"; version="1.0"; sha256="0ryi9gdf4sis77c0qxm6r86mfkk1nq9djs297y64nr6ng3rv9p9d"; depends=[boot Matrix mvtnorm]; }; + NegativeControlOutcomeAdjustment = derive2 { name="NegativeControlOutcomeAdjustment"; version="0.0.4"; sha256="1lx60nl73y6c5785h0a1b59wz04lldrpsydbrwnb9ixbp8ibzp5h"; depends=[]; }; Neighboot = derive2 { name="Neighboot"; version="1.0.0"; sha256="116q82svg8sw1xwnx253nd8vrv5i70rj45v7lf00m778rh9l2rmr"; depends=[dplyr igraph magrittr RDS RDStreeboot]; }; NestedCategBayesImpute = derive2 { name="NestedCategBayesImpute"; version="1.2.1"; sha256="15j54whvhqy26v1iikpk8ys75d7m5b188ggdzrlgzhjg0f9j45fl"; depends=[coda dplyr Rcpp RcppParallel]; }; NetCluster = derive2 { name="NetCluster"; version="0.2"; sha256="0aby8kfniw07jap795cwk69z83p45q5rap73zp1qbmkm3qcb31g4"; depends=[sna]; }; NetComp = derive2 { name="NetComp"; version="1.6"; sha256="11rxpdihn575diqfvc7yvxhlr2c19fig4v4a5c6jhqyfdsd60fsv"; depends=[gdata]; }; NetDA = derive2 { name="NetDA"; version="0.1.0"; sha256="01wrngk0cdlz3qf1kj2z75p2b4q0lhkpyjgaskn6vldsdgh94wri"; depends=[glasso]; }; - NetData = derive2 { name="NetData"; version="0.3"; sha256="1jf05zwy0c6gmm7kvxlwvai61bz4wpsw7cl0h4i21ipzn1rqxmqj"; depends=[]; }; NetExplorer = derive2 { name="NetExplorer"; version="0.0.2"; sha256="0k8jhl0p2dp45lx4h77r0bkcff8vn1f9gvr475cshpmyipziiwnq"; depends=[]; }; NetFACS = derive2 { name="NetFACS"; version="0.3.1"; sha256="0z4smbh8dcb0nffyzn0yyndzniw6wh026hvdj18bz5qqv32pcq1b"; depends=[arrangements doParallel dplyr ggplot2 ggraph igraph magrittr patchwork picante Rfast rlang tibble tidygraph tidyr]; }; NetIndices = derive2 { name="NetIndices"; version="1.4.4"; sha256="0ydivbri8l8zkxi18ghj9h66915scyhca8i9mcyq4b06mjfigss8"; depends=[MASS]; }; + NetLogoR = derive2 { name="NetLogoR"; version="0.3.10"; sha256="1ns35pn5h63lg5wzwyvbyyv770vkxhh2b7n85h8rfazgkyv0w3la"; depends=[abind CircStats data_table matrixStats quickPlot raster rgeos sp SpaDES_tools]; }; NetMix = derive2 { name="NetMix"; version="0.2.0"; sha256="097cyk0lf3h4v3ff0icqj7a80yvs06damw1sc4hdqf2f21d6qihh"; depends=[clue gtools igraph lda MASS Matrix poisbinom Rcpp RcppArmadillo]; }; NetOrigin = derive2 { name="NetOrigin"; version="1.1-4"; sha256="061hfllic8z3ps4znk3c7qjhzqdifk99ikvczxacih5hw86a9j4m"; depends=[colorspace corpcor Hmisc igraph mvtnorm plyr]; }; NetPreProc = derive2 { name="NetPreProc"; version="1.1"; sha256="0r51dqymf2nqm86py4zwdlf7qf120j0bg9r6a9c0gsyyijh4z40p"; depends=[graph]; }; @@ -3273,7 +3287,7 @@ in with self; { NetSimR = derive2 { name="NetSimR"; version="0.1.1"; sha256="01w2nlk1g0h81pbn3g3ch09k3ljcisysgpwihv6wlgd1wclaafmz"; depends=[]; }; NetSwan = derive2 { name="NetSwan"; version="0.1"; sha256="1mwdy3ahagiifj2bd1ajrafvnxzi74a1x1d3i2laf1hqpz3fbgld"; depends=[igraph]; }; NetWeaver = derive2 { name="NetWeaver"; version="0.0.6"; sha256="058fi3vbp11mbg69n4yp1zf48akfdl6s2p0qpa0v6ngmk2zjk0bq"; depends=[]; }; - NetworkChange = derive2 { name="NetworkChange"; version="0.7"; sha256="0d9p52n4krhxy5l3f27xs90jw4am0slvyv3p6q57ba8sbwliafrf"; depends=[abind GGally ggplot2 ggrepel ggvis gridExtra igraph MASS MCMCpack mvtnorm network qgraph RColorBrewer reshape rlang Rmpfr sna tidyr]; }; + NetworkChange = derive2 { name="NetworkChange"; version="0.8"; sha256="03rzyfiwbqpr4jj3wdg3s1gnfizz39j07yk0q2fkq3a8pfx4w306"; depends=[abind GGally ggplot2 ggrepel ggvis gridExtra igraph MASS MCMCpack mvtnorm network qgraph RColorBrewer reshape rlang Rmpfr tidyr]; }; NetworkComparisonTest = derive2 { name="NetworkComparisonTest"; version="2.2.1"; sha256="0a4v69p1xykzb4s9sqj2bqm333a6sx2j8f8jdnp3l7dlkwg9clqp"; depends=[IsingFit IsingSampler Matrix qgraph reshape2]; }; NetworkDistance = derive2 { name="NetworkDistance"; version="0.3.4"; sha256="0z3q15aq5jqwbyxr4464nq74ib7644f185h8wfzvfi491xkrl4cr"; depends=[doParallel foreach graphon igraph Matrix network pracma Rcpp RcppArmadillo Rdpack RSpectra]; }; NetworkExtinction = derive2 { name="NetworkExtinction"; version="0.1.1"; sha256="1958kpdcqp4hhkqmfjg2qnrzhwcmfkbgdriq9iyqmmcr7qm8c1y7"; depends=[broom dplyr ggplot2 magrittr network scales sna tidyr]; }; @@ -3296,7 +3310,7 @@ in with self; { NobBS = derive2 { name="NobBS"; version="0.1.0"; sha256="0i0jyny1c29knpcl4szqwyxvdc3dqjfk5lf2xvwjdx3qas92w03l"; depends=[coda dplyr magrittr rjags]; }; NoiseFiltersR = derive2 { name="NoiseFiltersR"; version="0.1.0"; sha256="0y90si8f5hsi273g10hw700r72la30hwqlwg59gaq76wqlkm8j0p"; depends=[caret e1071 kknn MASS nnet randomForest rJava rpart RWeka]; }; NominalLogisticBiplot = derive2 { name="NominalLogisticBiplot"; version="0.2"; sha256="0m9442d9i78x57gdwyl3ckwp1m6j27cam774zkb358dw5nmwxbmz"; depends=[gmodels MASS mirt]; }; - NonCompart = derive2 { name="NonCompart"; version="0.4.9"; sha256="0c1dhljc1xzqxs5483nkq3sjqxk75c8809ah8jr97y6ff4i1pvb9"; depends=[]; }; + NonCompart = derive2 { name="NonCompart"; version="0.5.0"; sha256="0chskza5d14pf4drj4i56hpf61md69vqnq4w75zsxy3zrsb23xcy"; depends=[]; }; NonNorMvtDist = derive2 { name="NonNorMvtDist"; version="1.0.2"; sha256="11xqdrx03q3anavyxpzb0hz6mcbdy252rzzjlpa2byfdlrfvn178"; depends=[cubature]; }; NonParRolCor = derive2 { name="NonParRolCor"; version="0.6.0"; sha256="0z4c5f2x995k2lgfwnylag69sgrzq1n3qg9c8fn1mhzkdw4y4108"; depends=[colorspace doParallel foreach gtools pracma scales]; }; NonProbEst = derive2 { name="NonProbEst"; version="0.2.4"; sha256="1w2ihnwwdnxlnphyd26261lsxaknpi51c15rmn9m183djz9gsvdv"; depends=[caret e1071 glmnet Matrix sampling]; }; @@ -3308,10 +3322,10 @@ in with self; { NormalBetaPrime = derive2 { name="NormalBetaPrime"; version="2.2"; sha256="03il9c57dbwgw38rzckkk0wkc37z8kfdrb7b4k471gm7mqhsm3m3"; depends=[GIGrvg glmnet HyperbolicDist MASS Matrix pracma pscl truncnorm]; }; NormalGamma = derive2 { name="NormalGamma"; version="1.1"; sha256="0r3hhfscif0sx9v8f450yf119gpvf3ilpb8n3ziy4v4qf2jlcfnk"; depends=[histogram optimx]; }; NormalLaplace = derive2 { name="NormalLaplace"; version="0.3-0"; sha256="0njgjdx2yvvy5jb5zn6zr7jdz5hck5bbkicv15z4ai4ibmckqjmh"; depends=[DistributionUtils GeneralizedHyperbolic]; }; - NormalityAssessment = derive2 { name="NormalityAssessment"; version="0.0.1"; sha256="1syxv75dmwshxh8ahwywyd1jyk3ryhdi5ig22gw1k2kkddy5j49f"; depends=[dplyr DT ggplot2 rio shiny shinyalert shinyBS stringi stringr]; }; + NormalityAssessment = derive2 { name="NormalityAssessment"; version="0.0.2"; sha256="0i02mqxgyzm6y02rbk6skqp58hf35cg4wpfa9abx8rsmbg09jpxj"; depends=[dplyr DT ggplot2 rio shiny shinyalert shinyBS stringi stringr]; }; NostalgiR = derive2 { name="NostalgiR"; version="1.0.2"; sha256="0rpvwi815sdhaxqpji1y6g0vy8mkn5k6wci0a4jf54pkywwkwrwp"; depends=[txtplot]; }; Nozzle_R1 = derive2 { name="Nozzle.R1"; version="1.1-1"; sha256="05sjip4sz12mwd3jcbvk342p83kdmrd4l2jrh17p18w4l7w4nn0z"; depends=[]; }; - Numero = derive2 { name="Numero"; version="1.8.4"; sha256="0kkska60ilk3lqf5w6z21pjldipg4pky0qgzpbsl69ial62z8xsy"; depends=[Rcpp]; }; + Numero = derive2 { name="Numero"; version="1.9.0"; sha256="0knfp10f8apq2bbp4pbkqwhzwhlvcxnbihdy4gn7parfm07q5wws"; depends=[Rcpp]; }; NutrienTrackeR = derive2 { name="NutrienTrackeR"; version="1.2.0"; sha256="0n54kgxcj8w3r3iqdr13kia49b9zgxiki64h90yygpbg32hqdn8b"; depends=[ggplot2 shiny]; }; OAIHarvester = derive2 { name="OAIHarvester"; version="0.3-3"; sha256="00j5f6kw67qr83cmds9y5rzwiv2sb2b2bfbr5cclpr3wcsw278fs"; depends=[curl xml2]; }; OBASpatial = derive2 { name="OBASpatial"; version="1.8"; sha256="1xc4qz3i5pphgf17asyiafdnlhv5k88rw0fwkwfh8cz767wip1hw"; depends=[cubature HDInterval invgamma LaplacesDemon modeest mvtnorm truncdist]; }; @@ -3340,7 +3354,7 @@ in with self; { OOS = derive2 { name="OOS"; version="1.0.0"; sha256="0jnj5y26rv0i2561mywcxb7aavmpq16ippq6rblb8jiqjd05nhib"; depends=[caret dplyr forecast furrr future ggplot2 glmnet imputeTS lmtest lubridate magrittr purrr sandwich tidyr vars xts zoo]; }; OOmisc = derive2 { name="OOmisc"; version="1.2"; sha256="09vaxn5czsgn6wpr27lka40kzd76jzqgqxavf26ms3m9kkdf83g4"; depends=[]; }; OPDOE = derive2 { name="OPDOE"; version="1.0-10"; sha256="04z944i4f3i0cjnxh32wf7n2dfyynnvkz4lxdkn90flam2np58yv"; depends=[crossdes gmp mvtnorm nlme orthopolynom polynom]; }; - OPI = derive2 { name="OPI"; version="2.10.0"; sha256="05vxk30hrbikfrd07g39qvxzp9zl1dlgi6fqblwxpyhnp3pn4ckf"; depends=[]; }; + OPI = derive2 { name="OPI"; version="2.10.1"; sha256="0yzl3s0bkygwh1mg2fshf370k7hr0iw091k1jpwf92fvym1a68ia"; depends=[]; }; ORCI = derive2 { name="ORCI"; version="1.1"; sha256="0xy5lvz2scz06fphjyhqbdhp4bizmv87a8xykp9dbgx8b4ssnqgz"; depends=[BiasedUrn BlakerCI PropCIs]; }; ORCME = derive2 { name="ORCME"; version="2.0.2"; sha256="1pm8ajj24qqj2fir0gjzq5f4mfpl1cnj6fm2z5qg6g3sbnm57ayk"; depends=[Iso]; }; ORDER2PARENT = derive2 { name="ORDER2PARENT"; version="1.0"; sha256="04c80vk6z227w6qsnfls89ig4vqyiiymdarhq1pxa0gpr8j2ssx5"; depends=[Matrix]; }; @@ -3351,7 +3365,7 @@ in with self; { ORTSC = derive2 { name="ORTSC"; version="1.0.0"; sha256="0byja1gi44ymn68cfai8apcimlxmnflqr1pj8k4y7l8lqd3fyz60"; depends=[googleAuthR googleCloudVisionR]; }; ORdensity = derive2 { name="ORdensity"; version="1.0"; sha256="1g9d85dyfhlqmwsigdn64hifasbvw70g3wpph2h9v2ksvia0cd31"; depends=[cluster distances doParallel doRNG foreach plyr Rfast]; }; OSCV = derive2 { name="OSCV"; version="1.0"; sha256="17wrfak6b6m2l3iqbhdwcfh0rlqb14rkvrbari7v46gya9v7hq20"; depends=[mc2d]; }; - OSDR = derive2 { name="OSDR"; version="1.1.3"; sha256="059sj003zsrabmjfhwvvpi599ssrckcqpiw2b3vz405ljnhjmlap"; depends=[]; }; + OSDR = derive2 { name="OSDR"; version="1.1.4"; sha256="0yf9l0fkqf9adanl8182nyislj2s2xvsnf2xp5y7pdj3af2k4m7w"; depends=[]; }; OSMscale = derive2 { name="OSMscale"; version="0.5.1"; sha256="0rjhyhh1iafgd9h1pbd2clyg2sh0gg7y1aqmiislqyn6h6jrvgqn"; depends=[berryFunctions OpenStreetMap sp]; }; OSNMTF = derive2 { name="OSNMTF"; version="0.1.0"; sha256="0g83wqh97iz3g4ganj2dy3biyn8cmb0v8zz6rydald1hfszj8aa2"; depends=[dplyr MASS]; }; OSTE = derive2 { name="OSTE"; version="1.0"; sha256="0l8whr883g3jp5ckgxr4zf9vj055jrjb7pfraacd15smnrbl0v5d"; depends=[pec prodlim ranger survival]; }; @@ -3372,15 +3386,15 @@ in with self; { Ohit = derive2 { name="Ohit"; version="1.0.0"; sha256="132d4drc2phw9ppxnczb1ycdg3dv085k8p6bcaj3v866j0hfxjgb"; depends=[]; }; OjaNP = derive2 { name="OjaNP"; version="1.0-0"; sha256="0xddspnnwlcxh2i66ilh6i920k53y7fv6m1hgj9h28qg2wy0vyah"; depends=[ICS ICSNP Rcpp]; }; OkNNE = derive2 { name="OkNNE"; version="1.0.0"; sha256="0ggx508cqkqc51qw10cajm8r3k5h474n7y8dgck2fr4db047zmcm"; depends=[FNN]; }; + OlinkAnalyze = derive2 { name="OlinkAnalyze"; version="3.0.0"; sha256="1kgfv8v9q2kx8cn1rvizvlybv7qd5qc6n27cxackv97w8jx73s59"; depends=[broom car dplyr emmeans forcats generics ggplot2 ggpubr ggrepel lme4 lmerTest magrittr readxl rlang stringr tibble tidyr tidyselect]; }; OmegaG = derive2 { name="OmegaG"; version="1.0.1"; sha256="1aihcrgml67rvnx9vpnq2nnbc79kicw4ks1fradsa36ykkdz6b1g"; depends=[]; }; OmicInt = derive2 { name="OmicInt"; version="1.1.7"; sha256="1rrh2z8hbfvha8yi7d7m7bpgz514cp9dzv5vs4yn5pagzca6r5np"; depends=[cluster dendextend dplyr ggExtra ggplot2 gtools igraph knitr lattice mclust pheatmap plotly RColorBrewer RCurl reshape2 rmarkdown STRINGdb stringr tidyr tidyselect]; }; OmicKriging = derive2 { name="OmicKriging"; version="1.4.0"; sha256="08frr38yf5d0l3zwkbq9465xrbyzsn8sx9icqc3yvfnxrkhrpzig"; depends=[doParallel foreach irlba ROCR]; }; OmicNavigator = derive2 { name="OmicNavigator"; version="1.8.0"; sha256="081ibvrz5qc6biql6mx0454kfgmm5sgfrjgdf7y3kb1bn7b2x9wq"; depends=[data_table jsonlite]; }; OmicsPLS = derive2 { name="OmicsPLS"; version="2.0.2"; sha256="08vx4925j5ln366h7nzhf1ra5ciplrqw911258chi9di7gpm8g50"; depends=[dplyr ggplot2 magrittr softImpute tibble]; }; - Omisc = derive2 { name="Omisc"; version="0.1.4"; sha256="1f6aakywjabq0xds5yl70ivr1jmw26zry2m65xszfp8p5mp45c7g"; depends=[copula MASS psych]; }; OmnibusFisher = derive2 { name="OmnibusFisher"; version="1.0"; sha256="0x3q04g45nixgsrl4biqqi6bk4kx79spq5whm3n4ppr0nkv8dw4h"; depends=[CompQuadForm stringr survey]; }; OnAge = derive2 { name="OnAge"; version="1.0.1"; sha256="1zby5sf92c185b5m19jv4ndgbv6mz107nc47zn1d6bijrypzpc20"; depends=[]; }; - OncoBayes2 = derive2 { name="OncoBayes2"; version="0.8-2"; sha256="0hhj1sdn0yzcib0dh5prc93ill2a3mvh5a8jjsvigk3j5bvhbfwi"; depends=[abind assertthat bayesplot BH checkmate dplyr Formula ggplot2 Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tibble tidyr tidyselect]; }; + OncoBayes2 = derive2 { name="OncoBayes2"; version="0.8-5"; sha256="09im0d01cknxc9kwzpl6xr34fhbj3yqgjgjpfczwmxf4gdhvxvx2"; depends=[abind assertthat bayesplot BH checkmate dplyr Formula ggplot2 Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tibble tidyr tidyselect]; }; Oncotree = derive2 { name="Oncotree"; version="0.3.3"; sha256="147rc9ci66lxbb91ys2ig40sgmldi15p604yysrd4ccbxpbk2zwf"; depends=[boot]; }; OneR = derive2 { name="OneR"; version="2.2"; sha256="1k7rzhcwq5b2yi4zfsc1r0yb6w65gxj9835d2a1dclallja3zav2"; depends=[]; }; OneSampleMR = derive2 { name="OneSampleMR"; version="0.1.0"; sha256="0gxsfx5www0ndmxaymva2krsyricf4b6nyvjz1hlyjckl3drmqbw"; depends=[Formula gmm ivreg lmtest msm]; }; @@ -3392,7 +3406,7 @@ in with self; { OpenImageR = derive2 { name="OpenImageR"; version="1.2.1"; sha256="16c80b62f2cinvhr5v3rdhkx2s69nvjq25szbnj5ipky31ap5aif"; depends=[jpeg png R6 Rcpp RcppArmadillo shiny tiff]; }; OpenLand = derive2 { name="OpenLand"; version="1.0.2"; sha256="02d1dflcbjvm9hgvsm5gpc3s0n0njf4w3224yqk9nc0i49nw01fi"; depends=[circlize dplyr ggplot2 gridExtra networkD3 raster tidyr]; }; OpenML = derive2 { name="OpenML"; version="1.10"; sha256="132swv22ymm0wxq8y65y2niq8chmga1mnl1lgn6m3cgljvwad47r"; depends=[backports BBmisc checkmate curl data_table digest httr jsonlite memoise stringi XML]; }; - OpenMx = derive2 { name="OpenMx"; version="2.20.3"; sha256="1jv22mldcxzbk0karwiih909sx2z139l2588a86ifj83fah7f36s"; depends=[BH digest lifecycle MASS Matrix Rcpp RcppEigen RcppParallel rpf StanHeaders]; }; + OpenMx = derive2 { name="OpenMx"; version="2.20.6"; sha256="1v969100hllh0lwlxd2gv0k7krrsp9gc07iinx0nn04wkzh0rib5"; depends=[BH digest lifecycle MASS Matrix Rcpp RcppEigen RcppParallel rpf StanHeaders]; }; OpenRepGrid = derive2 { name="OpenRepGrid"; version="0.1.12"; sha256="02p9b2y99z9yrrm2pl86p0yqwah0yjic2wdcd4k0mhccimmmkaip"; depends=[abind colorspace GPArotation openxlsx plyr psych pvclust rgl stringr XML]; }; OpenRepGrid_ic = derive2 { name="OpenRepGrid.ic"; version="0.5.1"; sha256="06yy2c64lrqj6h36swbxqsmphsglynxlbb76s5rc79d1627hsmdc"; depends=[dplyr DT formattable igraph magrittr openxlsx RColorBrewer reshape2 rintrojs scales shiny shinyBS shinycssloaders shinydashboard shinydashboardPlus shinyFeedback shinyjs shinythemes shinyWidgets stringr testthat tidyr tidyverse withr]; }; OpenSpecy = derive2 { name="OpenSpecy"; version="0.9.3"; sha256="1wm720g21x0f79ayrjm46vp08zkapjk78p9b5m2ch11vs9blxkd5"; depends=[digest dplyr hexView hyperSpec osfr rlang shiny signal]; }; @@ -3402,6 +3416,7 @@ in with self; { OptCirClust = derive2 { name="OptCirClust"; version="0.0.4"; sha256="0g34kn2gmvy9r4ph0vbssc9gl8bcpw6d72b8zpf38iml4zh52b0n"; depends=[Ckmeans_1d_dp plotrix Rcpp Rdpack reshape2]; }; OptGS = derive2 { name="OptGS"; version="1.1.1"; sha256="1acwwjng5ri5vganv7b5pagp7524ifr0q8h1pbfb5g6z3x6w08kh"; depends=[]; }; OptHedging = derive2 { name="OptHedging"; version="1.0"; sha256="0g7qaf5abvbcqv2h1dciwn3gwpz084ryqjjk0yabdm4ym0y38ddm"; depends=[]; }; + OptHoldoutSize = derive2 { name="OptHoldoutSize"; version="0.1.0.0"; sha256="0ab0vvbg1nmpbbhq5a5nkwv7ap0fq4542l5da7g8qlwc23h6sfs5"; depends=[matrixStats mle_tools mnormt mvtnorm ranger]; }; OptInterim = derive2 { name="OptInterim"; version="3.0.1"; sha256="1ks24yv5jjhlvscwjppad27iass59da1mls99hlif0li9mvkbvyk"; depends=[clinfun mvtnorm]; }; OptM = derive2 { name="OptM"; version="0.1.6"; sha256="1x3df5qmbs920rgxpc32grwran49nxpnw9swrba9877c0ixg2dww"; depends=[boot SiZer]; }; OptSig = derive2 { name="OptSig"; version="2.1"; sha256="1k43qsjdc00plgsindjkfn6v098v0zfy7sjkh4n4ybib2qx3v8fn"; depends=[pwr]; }; @@ -3433,10 +3448,10 @@ in with self; { PAGWAS = derive2 { name="PAGWAS"; version="2.0"; sha256="0bz47ivd32kx1amgqllqbxyyvj773q7wasgk924hmibabiixa8nx"; depends=[foreach lars mnormt]; }; PAMA = derive2 { name="PAMA"; version="1.2.0"; sha256="12fvkcdkn66gzr193fq9byf64qlq2x9dkjv9hpfw770l4yw496jn"; depends=[ExtMallows mc2d PerMallows rankdist Rcpp]; }; PAMhm = derive2 { name="PAMhm"; version="0.1.2"; sha256="0k0n3ni0ypcizri39v76x1vv7hlxlmbpfi7w81yxy9inz7zz4zfw"; depends=[cluster heatmapFlex plyr R_utils RColorBrewer readmoRe readxl robustHD]; }; - PAMmisc = derive2 { name="PAMmisc"; version="1.8.0"; sha256="0r3p9bys4mdnf145frsvq3gdyq7xxd0yshiqbz65yyybc8di26fw"; depends=[dplyr geosphere ggplot2 hoardr httr lubridate magrittr ncdf4 PamBinaries purrr RcppRoll rerddap RSQLite seewave stringr tuneR viridis viridisLite xml2]; }; - PAMpal = derive2 { name="PAMpal"; version="0.15.0"; sha256="0blcxwbax8j7glz28pncs6l4c0gfgc2k1166prh5w6l30l30h5pi"; depends=[data_table dplyr gam ggplot2 knitr lubridate manipulate PamBinaries PAMmisc purrr reticulate rlang RSQLite rstudioapi seewave signal stringr tidyr tuneR xml2]; }; + PAMmisc = derive2 { name="PAMmisc"; version="1.8.3"; sha256="0k1zg992ygg9c75lf5nmnrvq2fbl2j5hgcyhzxyjdm0hmznv6r6m"; depends=[dplyr geosphere ggplot2 hoardr httr lubridate magrittr ncdf4 PamBinaries purrr RcppRoll rerddap RSQLite seewave stringr tuneR viridis viridisLite xml2]; }; + PAMpal = derive2 { name="PAMpal"; version="0.16.0"; sha256="0chpsqwrimn6v5i24r77dr4ib9kgi71ppmjzjyhck1ygv702g260"; depends=[data_table dplyr gam ggplot2 knitr lubridate manipulate PamBinaries PAMmisc purrr reticulate rlang RSQLite rstudioapi seewave signal stringr tidyr tuneR xml2]; }; PAS = derive2 { name="PAS"; version="1.2.5"; sha256="175p3bnpnhknfsc29hri0l2ipz1x6qcxs2bq7awns8lccam466r2"; depends=[glmnet]; }; - PASSED = derive2 { name="PASSED"; version="1.1-1"; sha256="06dr5q14lyam6ywn6bg6vfkb68jqb6hw2phd10jcpdzcjvhsbz0r"; depends=[betareg rootSolve]; }; + PASSED = derive2 { name="PASSED"; version="1.2-1"; sha256="1qzxc2xwqw1vc4ld8iask1aijmsl0jhw17rgph08hwl8cqmnm4nd"; depends=[betareg rootSolve]; }; PASWR = derive2 { name="PASWR"; version="1.1"; sha256="1rxymnqvflypc6m62f5vw65l8x1m2yah7r11hhpmzdq2l2sg8fci"; depends=[e1071 lattice MASS]; }; PASWR2 = derive2 { name="PASWR2"; version="1.0.5"; sha256="124ybvqdz2ikwqagq6bw74487psrscwxkj0gqwz43p8kinkvx3ks"; depends=[e1071 ggplot2 lattice]; }; PASenseWear = derive2 { name="PASenseWear"; version="1.0"; sha256="0x84j1vdds4g08birmjxb0c2g1ahwv83bk11532jkmg32dnhmj58"; depends=[ggplot2]; }; @@ -3455,7 +3470,7 @@ in with self; { PBSmodelling = derive2 { name="PBSmodelling"; version="2.68.8"; sha256="07qaqb6sd1idmryxlz0gxb4d3apzql9vp4b16nazba08ksx0y7wf"; depends=[XML]; }; PCA4TS = derive2 { name="PCA4TS"; version="0.1"; sha256="1qi9nlaf5181afrdvddh10a9vxyhry102n3dhai86im8yz4if9y6"; depends=[tseries]; }; PCADSC = derive2 { name="PCADSC"; version="0.8.0"; sha256="0pwkmmnsw3c6ch2k5wdc8ig71994pdp79v3a5aa9n9aq55a8c2ir"; depends=[ggplot2 Matrix pander reshape2]; }; - PCAmatchR = derive2 { name="PCAmatchR"; version="0.3.0"; sha256="181glfz5nqffdyycycf4w96lyjkvqsbs3av47ah2hagl3innr1vk"; depends=[]; }; + PCAmatchR = derive2 { name="PCAmatchR"; version="0.3.2"; sha256="1dpilm3f6jylm2zggdpdz1gx0z6i56p8rxj744d9lqs1lp6nf37y"; depends=[]; }; PCAmixdata = derive2 { name="PCAmixdata"; version="3.1"; sha256="0flrsnbchwk06dmkg3vqykp9n4pqs265szn1r10navp8ki3rrmvh"; depends=[]; }; PCDimension = derive2 { name="PCDimension"; version="1.1.11"; sha256="0kpw0rpb9k82psfpd19vvvsakvm0pcz1n3kkkcihagp1kzlv4xkw"; depends=[changepoint ClassDiscovery cpm kernlab oompaBase]; }; PCFAM = derive2 { name="PCFAM"; version="1.0"; sha256="196jzv0f6j60zkyagm9n98339ipn8mrhmhl3q4g053z8f6mm9zmv"; depends=[]; }; @@ -3466,7 +3481,6 @@ in with self; { PCMBase = derive2 { name="PCMBase"; version="1.2.12"; sha256="0p18g660yax8mmnhq1pd4nax4saf8syqj7c1xpspjbfkr78kh15q"; depends=[ape data_table expm ggplot2 mvtnorm xtable]; }; PCMBaseCpp = derive2 { name="PCMBaseCpp"; version="0.1.9"; sha256="0k40mxs8w1vk7qwpkv8gnq6cq3kpj7wvf0i6f1qn1wmm2vvz1kfy"; depends=[abind data_table PCMBase Rcpp RcppArmadillo]; }; PCMRS = derive2 { name="PCMRS"; version="0.1-3"; sha256="02dkszfaqkwksyf0wics4lldyqlwviw2mpc8kb04nhxnwh50vy1g"; depends=[cubature ltm mvtnorm Rcpp RcppArmadillo statmod]; }; - PCObw = derive2 { name="PCObw"; version="0.0.0"; sha256="1mz9fpd8k0fs14gvs9bhzrpydz200fsg52njaw2nr08184q78r4y"; depends=[Rcpp RcppEigen]; }; PCPS = derive2 { name="PCPS"; version="1.0.7"; sha256="0gxymz0yws1q1bxkpxi0lmbv57xx62h3dl7z3i2cnbagswkax3zh"; depends=[ape nlme phylobase picante RcppArmadillo SYNCSA vegan]; }; PCRedux = derive2 { name="PCRedux"; version="1.1"; sha256="0714q5afki3i8vja3qakzjx7r082m99zhsimzlsqjhq4fa3jb8q2"; depends=[bcp changepoint chipPCR ecp fda_usc MBmca pbapply pracma qpcR robustbase segmented shiny zoo]; }; PCS = derive2 { name="PCS"; version="1.2"; sha256="0488h6s1yz6fwiqf88z2vgckn6i0kwls8cazmpw3wspnaqvl2n4s"; depends=[multtest statmod]; }; @@ -3475,11 +3489,12 @@ in with self; { PDE = derive2 { name="PDE"; version="1.3.0"; sha256="1nz0xrhs2iin2grqvxhp99775q8wrjp7isyr1i415vi936jabs0i"; depends=[tcltk2]; }; PDFEstimator = derive2 { name="PDFEstimator"; version="3.1"; sha256="0l9iq7jr266f44laxbhj23ngp5m4fimhxmr4nszajr0j3w14wmrl"; depends=[]; }; PDM = derive2 { name="PDM"; version="0.1"; sha256="1pbdy13ji9c6krgh2r1qgrzmf4hdmrdzylsr71n3hh5jq4n9xg8x"; depends=[jpeg]; }; + PDMIF = derive2 { name="PDMIF"; version="0.1.0"; sha256="0mlc31f4z0k5xk1fil0hx5dcbm7afia74kxb7xmnx4jcblidxnd2"; depends=[diagonals ncvreg quantreg]; }; PDN = derive2 { name="PDN"; version="0.1.0"; sha256="082ydvwcjc2rs7hlakrkgbbm9c419m408a14a9dgfdwm16yif3jd"; depends=[ggplot2 glmnet network survival]; }; PDQutils = derive2 { name="PDQutils"; version="0.1.6"; sha256="0mmfi0ifwbkjm0274sddpwkj27cvdkwngnka8vdmfm4b2nn7vgsp"; depends=[moments orthopolynom]; }; PDSCE = derive2 { name="PDSCE"; version="1.2"; sha256="17lc6d8ly6jbvjijpzg45dvqrzrh5s1sp415nycazgpbg9ypwr2h"; depends=[]; }; PDShiny = derive2 { name="PDShiny"; version="0.1.0"; sha256="0s09sywvy83dj06rkxzyi06wfymwnfpgf3lpgjbb8ps8q3byd4vs"; depends=[shiny]; }; - PDtoolkit = derive2 { name="PDtoolkit"; version="0.1.0"; sha256="0am2plgl8hvkgnm9lcldyrypp2c0p700xbbp8m679pd9h1pc1888"; depends=[dplyr monobin rpart]; }; + PDtoolkit = derive2 { name="PDtoolkit"; version="0.2.0"; sha256="1glfwq8yw4m4iwipnbc95lp4gbkg0xp28f5cz6gixg4ik3a789px"; depends=[dplyr monobin rpart]; }; PEACH = derive2 { name="PEACH"; version="0.1.1"; sha256="0ciq2cci35rv39pgpp7i30jxlmr85726kh07ww22ryq3bm04ylg8"; depends=[MASS metap mnormt]; }; PEGroupTesting = derive2 { name="PEGroupTesting"; version="1.0"; sha256="1z863ard0cc2g8ibxnmxhiqhvs53r6b8gpnavnfchm9432ifcbwi"; depends=[]; }; PEIP = derive2 { name="PEIP"; version="2.2-3"; sha256="1ljalgffgrn9l3q914jjxrn1j740jqk4j8q1vzn3si4np9mz92vp"; depends=[bvls fields geigen Matrix pracma RSEIS]; }; @@ -3496,13 +3511,14 @@ in with self; { PHInfiniteEstimates = derive2 { name="PHInfiniteEstimates"; version="2.1"; sha256="1q10ccdc1jhnddfrh5017cx05kdpfpq1z5jvhnidxaz50sccymmf"; depends=[coxphf lpSolve mlogit Rdpack survival]; }; PHSMM = derive2 { name="PHSMM"; version="1.0"; sha256="1phfdzhfdhyry11plfd8a2lcn3rg02m84brw7fp2lg3hsxjg5ch7"; depends=[Rcpp RcppArmadillo]; }; PHYLOGR = derive2 { name="PHYLOGR"; version="1.0.11"; sha256="1fq2ny093b4881nwgj6wr8qd5g4dcxb51sdx40ndyxxpq6jj16n9"; depends=[]; }; + PHclust = derive2 { name="PHclust"; version="0.1.0"; sha256="18jby44hnk132l0wviqb0wi6nxkg1xisqjh8cxpss2rhwah3l4h1"; depends=[]; }; PHeval = derive2 { name="PHeval"; version="0.5.4"; sha256="06fy5dm4mnp29f01163rw1d1hyl7rlcp4pfw18s87ckpr931qyma"; depends=[survival]; }; PICBayes = derive2 { name="PICBayes"; version="1.0"; sha256="1js6zrnyc8v345cds3pypb2g9dd3vvj3bjq159qc113m9ll2xk0b"; depends=[coda MCMCpack survival]; }; PIGShift = derive2 { name="PIGShift"; version="1.0.1"; sha256="115dnsh4b1rxx1d2kc8x3vl5366h5f0i6gg8l1w3v0f8309qigis"; depends=[ape mvtnorm]; }; PINSPlus = derive2 { name="PINSPlus"; version="2.0.6"; sha256="0mws1064kwfm3csdzpfn4g2pwjasdmx9nz5x28znxv8hwrlgm2zw"; depends=[cluster doParallel entropy FNN foreach impute irlba matrixStats mclust Rcpp RcppArmadillo RcppParallel]; }; PIPS = derive2 { name="PIPS"; version="1.0.1"; sha256="1c5v3s6xys9p1q32k6mpsffhi9gwsq951rh12hs76dmak862yspc"; depends=[]; }; PK = derive2 { name="PK"; version="1.3-5"; sha256="1wzz2qv6h6nc2hcsg4098951i608xbbhc9f9ngamfigh5sbmzbh6"; depends=[]; }; - PKI = derive2 { name="PKI"; version="0.1-9"; sha256="1j8zwjp59bvm1f6cid232n242afjg23q1s438dbzz9wsyc2hx7y6"; depends=[base64enc]; }; + PKI = derive2 { name="PKI"; version="0.1-10"; sha256="08h9am4k69x3ayvp8ah42m2k989ii5j1lm9240v60l2dailij48m"; depends=[base64enc]; }; PKLMtest = derive2 { name="PKLMtest"; version="1.0.1"; sha256="0i1kxczlhn95jw1w7vw87svqhpq9j6xi4fhy974yjx9xhax171hq"; depends=[ranger]; }; PKNCA = derive2 { name="PKNCA"; version="0.9.5"; sha256="0grz5akbpb6i2dg8s9v34qr1zw1r8pczqw2amm6ihi8bxr799223"; depends=[digest dplyr nlme purrr rlang tibble tidyr]; }; PKPDmodels = derive2 { name="PKPDmodels"; version="0.3.2"; sha256="1h893civ77ahbgjnc6kq3l7rszmqmx9dlxwavldigpq3r79vd86k"; depends=[]; }; @@ -3539,6 +3555,7 @@ in with self; { PP = derive2 { name="PP"; version="0.6.3-11"; sha256="1z7v5jiljm534lhr92vz9z3cafwcp6hdxyrr1nhli2arxc1nin76"; depends=[Rcpp]; }; PP3 = derive2 { name="PP3"; version="1.2"; sha256="1g36al9w1rxyhfzbvpw9siqq57h2xl0zr94wysz8i0jzqkkqkrvf"; depends=[]; }; PPCI = derive2 { name="PPCI"; version="0.1.5"; sha256="141811iq0g2rq7lxpz9a44kyjfylj85yqgcjq7b23xfg2wbcp8dd"; depends=[rARPACK]; }; + PPLasso = derive2 { name="PPLasso"; version="1.0"; sha256="0lhqkjl3l77117sk6zq2abc54q7vr2bdbfhfw4nfrzl0m7ypqqba"; depends=[cvCovEst genlasso ggplot2 glmnet MASS]; }; PPMR = derive2 { name="PPMR"; version="1.0"; sha256="07fky5xc1dmmn23wwdjm46c86i7q20dv5f2147828v52hhky873g"; depends=[Rcpp RcppArmadillo]; }; PPQplan = derive2 { name="PPQplan"; version="1.1.0"; sha256="072r7myqsnpyla37q6bj9glwvbygb9g8xkl60q055yzxmfh4rsbr"; depends=[ggplot2 plotly]; }; PPRL = derive2 { name="PPRL"; version="0.3.6"; sha256="08z7fnvz9wdsdba6n19qxg6n32azka9890w16jj7qpv25bpkqvl1"; depends=[Rcpp settings]; }; @@ -3558,10 +3575,9 @@ in with self; { PROJ = derive2 { name="PROJ"; version="0.4.0"; sha256="1rqw28qqcyzla3ssif9jghvv0nyms9riabj2lxhlx1l3rbz0rsfx"; depends=[]; }; PROMETHEE = derive2 { name="PROMETHEE"; version="1.1"; sha256="0r53mb9ndwm4yli3h50cfamsjzpq6b67g72mszm7lpbqpj58wqw6"; depends=[lpSolve]; }; PROSPER = derive2 { name="PROSPER"; version="0.3.3"; sha256="1wdrdqii7d4yfky6706n9xjmabnz99jjja1c80nbj3fp8idsbli5"; depends=[data_table]; }; - PROTOLIDAR = derive2 { name="PROTOLIDAR"; version="0.1"; sha256="0bz3071b0wlcvh40vl3dyiiixk5avsj6kjjnvlvx264i5g08rij4"; depends=[]; }; PROreg = derive2 { name="PROreg"; version="1.1"; sha256="0jws41hgrpcih5ispp6f627f81sjbdygzgjbw4gawf31n5z8pi5a"; depends=[car fmsb Matrix matrixcalc numDeriv RColorBrewer rootSolve]; }; - PROscorer = derive2 { name="PROscorer"; version="0.0.1"; sha256="0mgj0mi0vzdk0agimsx4k9i4bss0j5lqiayzhldr1hrqrx2a4f3d"; depends=[PROscorerTools]; }; - PROscorerTools = derive2 { name="PROscorerTools"; version="0.0.1"; sha256="1vliffkfqdn5l96bncfgayv19i20kmawlxi8q853wamj6npdpv5r"; depends=[]; }; + PROscorer = derive2 { name="PROscorer"; version="0.0.3"; sha256="1wmv3yg1njgjc7vr3nkmq4643xfyxinrgjsfkkpahp5xbyyqb222"; depends=[PROscorerTools]; }; + PROscorerTools = derive2 { name="PROscorerTools"; version="0.0.2"; sha256="0fd50c54afa7w687nzw6gpnpn63pjv8brsivrgsv93b1iz8762k4"; depends=[]; }; PROsetta = derive2 { name="PROsetta"; version="0.3.5"; sha256="1igwhksfqv6pxf5jrhds4xvax0sif62vwj7hk3d3gdq0brgi27b9"; depends=[equate lavaan mirt mvnfast plink psych]; }; PRP = derive2 { name="PRP"; version="0.1.1"; sha256="1q4idlk2crxsd841b203hkcyp9glqhsg83liddqlxixxih7rkzp1"; depends=[mvtnorm]; }; PRROC = derive2 { name="PRROC"; version="1.3.1"; sha256="1m28h8pcd78049lz2qixhkcr9h5b3jik3maqzfbvq9y58z71i4a7"; depends=[]; }; @@ -3572,6 +3588,7 @@ in with self; { PSAgraphics = derive2 { name="PSAgraphics"; version="2.1.1"; sha256="05c0k94dxddyrhsnhnd4jcv6fxbbv9vdkss2hvlf3m3xc6jbwvh9"; depends=[rpart]; }; PSCBS = derive2 { name="PSCBS"; version="0.66.0"; sha256="14rs2wywipbkia3dbzfhpnkmfgdvm2bf586lggsx63sywlv5d02q"; depends=[aroma_light DNAcopy future listenv matrixStats R_cache R_methodsS3 R_oo R_utils]; }; PSF = derive2 { name="PSF"; version="0.4"; sha256="1hjry8vjqr6zk2i2ppf3fcpsr4v4jm1705qv6i1iz2agl6g2rcnp"; depends=[cluster data_table forecast knitr]; }; + PSGD = derive2 { name="PSGD"; version="1.0.0"; sha256="08wrz1vwvicjxjkj38xr28s84ckvyvaxybvb6fw8m3gkfmgkd7b8"; depends=[Rcpp RcppArmadillo]; }; PSIMEX = derive2 { name="PSIMEX"; version="1.1"; sha256="0cndzasvg4y49incyd9nfz8y3z88ywbc7xk0zzjir665pv2xn23b"; depends=[knitr MCMCglmm pedigree plotrix]; }; PSLM2015 = derive2 { name="PSLM2015"; version="0.2.0"; sha256="1f8kzlqil2ac8a9fbj9fhdni2narh2yaaz044mlx7gsv2ns3ai19"; depends=[dplyr ggplot2 magrittr]; }; PSPManalysis = derive2 { name="PSPManalysis"; version="0.3.7"; sha256="1l8pik1abfrcid8ffwp3gjl9z5iby6l5xcmv1vcg1cbd96z4rvqn"; depends=[pkgbuild rstudioapi]; }; @@ -3583,14 +3600,14 @@ in with self; { PSweight = derive2 { name="PSweight"; version="1.1.6"; sha256="1llb6x30gn230qvgmfzd1fz7f8g6dgjy9mq0x8820mprpd9sjyxs"; depends=[gbm ggplot2 MASS nnet numDeriv SuperLearner]; }; PTAk = derive2 { name="PTAk"; version="1.4-0"; sha256="0hm1xij32wgirj7k7qv162zl5r7aj1iyyhpnlbm9wx1mbw72ccbc"; depends=[tensor]; }; PTE = derive2 { name="PTE"; version="1.7"; sha256="1azkrij4kfmvp03lnzm88gwgvz8g54jq94j0qg8ynxvyjzrppc98"; depends=[doParallel foreach survival]; }; - PTSR = derive2 { name="PTSR"; version="0.1.1"; sha256="17l0sg72a2yjb4wz0rkpv5lq1hrgzznaqk4abshddf0mm211n0fp"; depends=[actuar extraDistr numDeriv SuppDists]; }; + PTSR = derive2 { name="PTSR"; version="0.1.2"; sha256="0zwqw8zdp0p05nm64yg658iqfbj26n3v2py8r5m6g1sjispm5whf"; depends=[actuar extraDistr numDeriv SuppDists]; }; PTXQC = derive2 { name="PTXQC"; version="1.0.12"; sha256="0k9qvaf2dxfy2lcqnw0zyi17l682rma4c4hhh56m4bycwl2prmv2"; depends=[data_table ggdendro ggplot2 gtable jsonlite kableExtra knitr ontologyIndex plyr R6 R6P RColorBrewer reshape2 rmarkdown seqinr UpSetR xml2 yaml]; }; PTwins = derive2 { name="PTwins"; version="0.1.1"; sha256="166mc7w52n9d3n72h5jvvhbki87prkils3yigdf57dn9pyixrd66"; depends=[]; }; + PUMP = derive2 { name="PUMP"; version="1.0.0"; sha256="03xy77hq9d375v2hpszbnh700lkb4yfd2xn20lwh0bawx94m7rsy"; depends=[dplyr future ggplot2 ggpubr here magrittr mvtnorm purrr randomizr readr rlang stringr tibble tidyr tidyselect]; }; PUPAIM = derive2 { name="PUPAIM"; version="0.2.0"; sha256="1ky6f4yhm3hjrfxwk8vfalzzjgkq1922my26w457q8nfng7f2m53"; depends=[Metrics minpack_lm nls2]; }; PUlasso = derive2 { name="PUlasso"; version="3.2.4"; sha256="0mcmya0a5wzmssq05vpmkx9icfrq49kc0dc9ri3d9kx4w0sabffh"; depends=[doParallel foreach ggplot2 Matrix Rcpp RcppEigen]; }; PVAClone = derive2 { name="PVAClone"; version="0.1-6"; sha256="0fj5p3z2cwnyshrr4rq88wpij2xax5p4aq0x4p342kadx9d6x2ga"; depends=[coda dclone dcmle]; }; PVR = derive2 { name="PVR"; version="0.3"; sha256="0pcnazkiwmicr3k6k70r8skqk0pd46fcqhhxghawxjs4slgnygkj"; depends=[ape MASS splancs]; }; - PVplr = derive2 { name="PVplr"; version="0.1.0"; sha256="1ssmdhq2qczk6n50f8jj4j3nym7jj9bshfc1f29lccvmp7wxdp9a"; depends=[broom cluster dplyr ggplot2 magrittr minpack_lm purrr rlang segmented stlplus tidyr]; }; PWD = derive2 { name="PWD"; version="1.0"; sha256="0ksr3biaqd4p5a4lv28i4cwk1fn9822ndq2161mgvc1c344p06fj"; depends=[Rcpp RcppArmadillo]; }; PWEALL = derive2 { name="PWEALL"; version="1.3.0"; sha256="0nb0v6wvj9ay90qcbrr9drg2g84fb7a9m78pzb69wp8789i8ixhk"; depends=[survival]; }; PWFSLSmoke = derive2 { name="PWFSLSmoke"; version="1.2.117"; sha256="0140j2bg6mqxsg86ndq3c0ls1kdvd33r2qrwih2cjgmnfq31adkj"; depends=[cluster curl dplyr dygraphs geosphere ggmap glue httr jsonlite leaflet lubridate magrittr mapproj maps maptools MazamaCoreUtils MazamaSpatialUtils openair png purrr raster RColorBrewer readr reshape2 rgdal RgoogleMaps rlang sf slippymath sp stringr tibble tidyr xts]; }; @@ -3622,7 +3639,6 @@ in with self; { ParallelDSM = derive2 { name="ParallelDSM"; version="0.3.1"; sha256="02m7hvjjzwxz1apw4dv8ypxkd8i41if5s83fp2algf4kyv2s44nx"; depends=[caret geoR gstat pryr quantregForest randomForest raster rgdal snowfall sp stringr]; }; ParallelLogger = derive2 { name="ParallelLogger"; version="3.0.0"; sha256="1vvh1kzdq3bz7s3yg8kr3zc15qj0qy3d4k13ygd546374w1ywn0k"; depends=[jsonlite snow xml2]; }; ParallelPC = derive2 { name="ParallelPC"; version="1.2"; sha256="07y7xb16865khxkvwsk1yglzyy7ja4aj2wpkipaz48i77c3x8bi2"; depends=[]; }; - ParallelTree = derive2 { name="ParallelTree"; version="0.1.3"; sha256="1h53qwhc63fglm452b3by7f3g6f3hyqwkmwmbdqdb9rv3j4gvnvg"; depends=[ggplot2]; }; ParamHelpers = derive2 { name="ParamHelpers"; version="1.14"; sha256="1sx2ddm8hwvvmk0z65wa689w80py3fny82zjd4d29qwxlv854xmi"; depends=[backports BBmisc checkmate fastmatch]; }; Pareto = derive2 { name="Pareto"; version="2.4.2"; sha256="0396jixa4scqcgq8qyhin91mppg4knz2bfik67jh119clwdrd8vj"; depends=[]; }; ParetoPosStable = derive2 { name="ParetoPosStable"; version="1.1"; sha256="1fwji5wrhbxr089dll812csamvb5q2pxn1607rpirarifgfbj28m"; depends=[ADGofTest doParallel foreach lmom]; }; @@ -3638,7 +3654,7 @@ in with self; { PeakSegJoint = derive2 { name="PeakSegJoint"; version="2018.10.3"; sha256="0f0dw6swhhf301j4ci3rs8cmzd39dcjlb0kqxpdh7f00gp3qn7da"; depends=[PeakError penaltyLearning]; }; PeakSegOptimal = derive2 { name="PeakSegOptimal"; version="2018.05.25"; sha256="0j39jzy4r0h787vs3klgbpcmb096ds3hzhvv5w3xs53kl0qkypj4"; depends=[penaltyLearning]; }; PearsonDS = derive2 { name="PearsonDS"; version="1.2.1"; sha256="094q0vxqkm8r30rhgck3vh44qbaj00liddn23cnl7rglil5y6jrm"; depends=[]; }; - PearsonICA = derive2 { name="PearsonICA"; version="1.2-4"; sha256="0jkbqha1nb9pf72ffki47wymsdmd50smkdhvpzvanv4y2rmqfhvg"; depends=[]; }; + PearsonICA = derive2 { name="PearsonICA"; version="1.2-5"; sha256="04xi911wzkgsh1ajqamgwgv7wnpgyc20brjcr4jh6gfkfhacjprv"; depends=[]; }; PedCNV = derive2 { name="PedCNV"; version="0.1"; sha256="09qxcjzwdgzdkbj28rzmfv7k3q2qsiapnvx3m45a835r57h5gynp"; depends=[ggplot2 Rcpp RcppArmadillo]; }; PeerPerformance = derive2 { name="PeerPerformance"; version="2.2.5"; sha256="0cdv7ndbjxzaayxkrxh99jsyivlipbnipv21d4rmf8j8ssfq74r5"; depends=[lmtest sandwich]; }; PenCoxFrail = derive2 { name="PenCoxFrail"; version="1.0.1"; sha256="0snjf8jxzyf30xj3wx9p6g073dqw592l1j1c6yxfg8y4kgzhzwq7"; depends=[Matrix Rcpp RcppArmadillo survival]; }; @@ -3663,7 +3679,7 @@ in with self; { PharmPow = derive2 { name="PharmPow"; version="1.0"; sha256="0gabkd8p4zsig9p697lyk8m2jxb5abjk81rpzd5ih1yk1qanhsn5"; depends=[scatterplot3d]; }; Phase123 = derive2 { name="Phase123"; version="2.1"; sha256="0bz867wsnrflzlzrql1vgacymx70rb9wik9jw3g34i2vigpl8x8i"; depends=[Rcpp RcppArmadillo survival]; }; Phase12Compare = derive2 { name="Phase12Compare"; version="1.5"; sha256="0n9rjgdllpnj451a8d4p8x3mjf23czcmk7cn1c9v3l7mg4jn18h2"; depends=[mvtnorm Rcpp RcppArmadillo]; }; - PhaseTypeR = derive2 { name="PhaseTypeR"; version="1.0.1"; sha256="0kr8ysk2zlaap70v1nz9kcxppc9zb49xrwcv103lcn7gacz0iavx"; depends=[expm igraph]; }; + PhaseTypeR = derive2 { name="PhaseTypeR"; version="1.0.2"; sha256="0xm8h1wnq4j76my5ygih8ykrkji70fw74s9bpn2fwxm069h38npy"; depends=[expm igraph]; }; PheCAP = derive2 { name="PheCAP"; version="1.2.1"; sha256="00dfy0iby21kqfxz2npz4dn1klxcdlll8xrk2hsmc56fjfidbdhz"; depends=[glmnet RMySQL]; }; PheNorm = derive2 { name="PheNorm"; version="0.1.0"; sha256="10223yfaajzq1ip5qj3kk6iyjzrbb619jkrsxawb0dpkrj56d8v7"; depends=[]; }; PheVis = derive2 { name="PheVis"; version="1.0.2"; sha256="0pb6lxyz0ikgl64872dqjk1zj7pa793ggrp53hrg2y5m76wn8drr"; depends=[dplyr ggplot2 glmnet knitr lme4 purrr randomForest Rcpp tidyr viridis zoo]; }; @@ -3693,7 +3709,7 @@ in with self; { PlotRegionHighlighter = derive2 { name="PlotRegionHighlighter"; version="1.0"; sha256="0n1nkfr3sdaq6f5p9kgx4slrsvhpdbax3rinrkfkb1vnjj4swj77"; depends=[]; }; PoA = derive2 { name="PoA"; version="1.2.1"; sha256="0y8aqz1ainxdglxlfp9iqhvkmirpmc7dvwrcxz2l8lln86yrfqx6"; depends=[dplyr nloptr pracma tibble]; }; PoDBAY = derive2 { name="PoDBAY"; version="1.4.3"; sha256="1c1dmggcc8k4h56063r97gjavd44llc51j54qs1wck9zir414i8w"; depends=[dplyr ggplot2 Rcpp]; }; - PoPdesign = derive2 { name="PoPdesign"; version="1.0.0"; sha256="09bp31j3qvxancfiz242g752jms5nkjdsl63qinfi96pdq6snbrj"; depends=[Iso knitr magick]; }; + PoPdesign = derive2 { name="PoPdesign"; version="1.0.1"; sha256="14bfxsnbbyfql590f2yhm161qdbnfj7apb0jpiiw5d2bpppx3np8"; depends=[Iso knitr magick]; }; PoSI = derive2 { name="PoSI"; version="1.1"; sha256="1xwlj8dibaik37z6vj9q9vawavi7d49906wvxdd4drjzxzapq4ng"; depends=[]; }; PogromcyDanych = derive2 { name="PogromcyDanych"; version="1.7"; sha256="1fld65ksw47hvp0k1mjll0pxcpf0cjdqj5qhjx88mrbsr2f1y7x4"; depends=[dplyr SmarterPoland]; }; PoiClaClu = derive2 { name="PoiClaClu"; version="1.0.2.1"; sha256="1q89b0nypz2iivmgwg1nb1l7p285wy00s40j3qp8zc78ra1rjhyx"; depends=[]; }; @@ -3707,7 +3723,6 @@ in with self; { PoissonBinomial = derive2 { name="PoissonBinomial"; version="1.2.4"; sha256="0nx1xqqwsxrfyzrxl3lqmd7d7ljgp6k3z3cw49xbc2z6gbizgm7g"; depends=[Rcpp]; }; PoissonMultinomial = derive2 { name="PoissonMultinomial"; version="1.0"; sha256="0h8486f5a74yik340ghg6mwb80sj38r02lzjsm0wvv07kb7zq9zp"; depends=[mvtnorm Rcpp RcppArmadillo]; }; PoissonPCA = derive2 { name="PoissonPCA"; version="1.0.3"; sha256="0hdfnq427cywkpb34nj8kdjrc3yligzqag0729qnhh90si0ad036"; depends=[]; }; - PoissonSeq = derive2 { name="PoissonSeq"; version="1.1.2"; sha256="1hhx0gv06cp6hm6h36mqy411qn9x15y45crpzbyf8crfs85c6gbg"; depends=[combinat]; }; PolicyPortfolios = derive2 { name="PolicyPortfolios"; version="0.2.2"; sha256="1mfhyy4qyadk389jj6q8livfj45qdwb57wx74cg85jiqd2g19d90"; depends=[dplyr ggplot2 ineq mgcv reshape2 vegan]; }; PolyHaplotyper = derive2 { name="PolyHaplotyper"; version="1.0.1"; sha256="1sc1n42h78nyv004ddykvh1ljjczyiv5rl9sgxhi207lql1zd3wa"; depends=[XML]; }; PolyPatEx = derive2 { name="PolyPatEx"; version="0.9.2"; sha256="1z1hwvsw7b6cz5xfy35a5ldrzb3fhp3swiyz56v1zqblpsaz8n9g"; depends=[gtools]; }; @@ -3719,7 +3734,6 @@ in with self; { PooledCohort = derive2 { name="PooledCohort"; version="0.0.1"; sha256="1zf8waqiw4282iyr30byd7czrdnf9rvp3mra6b7slqqs1z53lhr2"; depends=[glue]; }; PooledMeanGroup = derive2 { name="PooledMeanGroup"; version="1.0"; sha256="0i9s7qskjnji3mf6clsi69rnni57v8cysgr9gh3hvxjzlf1sq8y7"; depends=[]; }; PopED = derive2 { name="PopED"; version="0.6.0"; sha256="0s8lr17s6w8isjig4z8jzgpnpsb1kg98d32y7kslbwzl08cbnza0"; depends=[boot codetools dplyr ggplot2 gtools magrittr MASS mvtnorm purrr stringr tibble]; }; - PopGenKit = derive2 { name="PopGenKit"; version="1.0"; sha256="0l4mbm0cyppgvcw2cbimrv29aiciyj00k8wfwcj5zr8sh7fgfhs4"; depends=[]; }; PopGenReport = derive2 { name="PopGenReport"; version="3.0.4"; sha256="0x9j9f9k65rfr4fxyrxqa9220psfh1bicls6vwbxmqsfdsfnvs0j"; depends=[ade4 adegenet calibrate data_table dismo gap gdistance genetics GGally ggplot2 knitr lattice mmod pegas plyr R_utils raster reshape rgdal RgoogleMaps sp vegan xtable]; }; PopGenome = derive2 { name="PopGenome"; version="2.7.5"; sha256="0xdwgih1n7bkykbzrnp293yzrlj80vr2v6rlsww61nxlhynbh9yn"; depends=[ff]; }; PopVar = derive2 { name="PopVar"; version="1.3.0"; sha256="1yc2qz7g5jv752yrhjq1ymfdjbqwdcp0hv7pm93qsn51k8fc8i9i"; depends=[BGLR qtl rrBLUP]; }; @@ -3735,7 +3749,7 @@ in with self; { PottsUtils = derive2 { name="PottsUtils"; version="0.3-3"; sha256="165k4sjh3kqkb8bzi68wx00yl77yfbgs70fcbpzmsmcw4g4hdpzn"; depends=[miscF]; }; Power2Stage = derive2 { name="Power2Stage"; version="0.5-4"; sha256="1g4zrprbd5q1dn4jfq5c9ayss4p0ljhbsfr3h8h9sjbmcg62rsal"; depends=[cubature mvtnorm PowerTOST]; }; PowerNormal = derive2 { name="PowerNormal"; version="1.2.0"; sha256="1kryqcjvgwk0l4z3gqxdiz47mha3jw5583jlb9z7ml6v7cam06sm"; depends=[]; }; - PowerTOST = derive2 { name="PowerTOST"; version="1.5-3"; sha256="0473vm267hsq7s8ggm4m01jig067qcpm30cza0j1kx9cw6ghq68d"; depends=[cubature mvtnorm TeachingDemos]; }; + PowerTOST = derive2 { name="PowerTOST"; version="1.5-4"; sha256="0k7vbgw0jswynwrammzzlc5radszjyqw9y5h3kh22bzpq4njvl1z"; depends=[cubature mvtnorm TeachingDemos]; }; PowerUpR = derive2 { name="PowerUpR"; version="1.1.0"; sha256="0bnkngdqhzhsbkzp4cxhgm8rzn83q4vm3fj2gkp7z4qznp37lh3j"; depends=[]; }; PracTools = derive2 { name="PracTools"; version="1.2.5"; sha256="1ysp8cwfmr9hihvb59y7gc74gw2a3bgbh57h99xp246i7d12bbhn"; depends=[]; }; PracticalEquiDesign = derive2 { name="PracticalEquiDesign"; version="0.0.3"; sha256="0jms5j9vg5g1llwkzjglj6k26wgj16jxdigllra4gjzk0azbgn9q"; depends=[dplyr ggplot2 numDeriv Temporal tidyr]; }; @@ -3748,7 +3762,7 @@ in with self; { PredictABEL = derive2 { name="PredictABEL"; version="1.2-4"; sha256="144xmfsp62ssmg501f4y173jrqyv8vps36j4yrwg6ghcmyc01wf8"; depends=[Hmisc lazyeval PBSmodelling ROCR]; }; PredictionR = derive2 { name="PredictionR"; version="1.0-12"; sha256="0kgc8rjdqskasdaxsbir9gwvm55rw5cpdg3y9nsj7ccg9fc1ji19"; depends=[fitdistrplus Renext]; }; PredictiveRegression = derive2 { name="PredictiveRegression"; version="0.1-4"; sha256="15vkisj3q4hinc3d537s8inhj3wk62q67qhy050xmp9j563ainmd"; depends=[]; }; - PresenceAbsence = derive2 { name="PresenceAbsence"; version="1.1.9"; sha256="17qn4ggkr5aqml45nkihj1j35y479ywkm1xcfkb2g8ky66jb0c0s"; depends=[]; }; + PresenceAbsence = derive2 { name="PresenceAbsence"; version="1.1.10"; sha256="0z4wc0ahqb5n6ikharpamcaim3g3mww0bkyblz61xaq2yzyny9jr"; depends=[]; }; PressPurt = derive2 { name="PressPurt"; version="1.0.2"; sha256="05kca0rlhlvhgnw3r3p4sh42zwvhrhcjdwz65ykp14jxybfhc8in"; depends=[data_table ggplot2 gridExtra reticulate]; }; PrevMap = derive2 { name="PrevMap"; version="1.5.4"; sha256="12cw4dmbsnx9c4y5l5k0paqn1wwbxy9ciw46r254n5rd275fhksh"; depends=[lme4 Matrix maxLik numDeriv pdist raster splancs truncnorm]; }; PriceIndices = derive2 { name="PriceIndices"; version="0.0.6"; sha256="18ci20z07xx7q1mr007hwn2sx65fmvli9w23brgvbpa1wyhh3lhg"; depends=[caret dplyr ggplot2 lubridate reclin reshape strex stringr xgboost]; }; @@ -3756,7 +3770,7 @@ in with self; { PriorGen = derive2 { name="PriorGen"; version="1.1.2"; sha256="0qvdqqdy7wdwwcq95mkgfyf7xf6xlpwdfs3gq299yyv2ba57flnm"; depends=[rootSolve]; }; PrivateLR = derive2 { name="PrivateLR"; version="1.2-22"; sha256="0d142fa3wk7yadvs8jszajs6hq9m03p0j6h5r4pbw7j0d1l72hgc"; depends=[]; }; ProAE = derive2 { name="ProAE"; version="0.2.8"; sha256="1dx5ddkvd8a8z53y1bvx7w7iljyzg15g1gcwqza0skc14s62p4zk"; depends=[DescTools dplyr ExactCIdiff ggnewscale ggplot2 ggtext gridExtra Hmisc magrittr]; }; - ProDenICA = derive2 { name="ProDenICA"; version="1.0"; sha256="04gnsnd0xzw3bfbssdp06bar0lk305ry2c97pmwxgiz3ay88dfsj"; depends=[gam]; }; + ProDenICA = derive2 { name="ProDenICA"; version="1.1"; sha256="0g1ldrb6gsrgm09xjl0dynqaargkj1in8k39rnpanf4zzyrj5181"; depends=[gam]; }; ProFit = derive2 { name="ProFit"; version="1.3.3"; sha256="0jrw0v7dg5mf4zxg7pqybh9qzsiqb3nnz8g5qlc4iz73mhr9gm2b"; depends=[celestial checkmate cubature FITSio LaplacesDemon magicaxis RColorBrewer]; }; ProFound = derive2 { name="ProFound"; version="1.14.1"; sha256="1p2mdy0z5p7as1x6vc572wjcl6f0acwgpvb39rmk2273kb1ldwz5"; depends=[celestial data_table FITSio foreach magicaxis RColorBrewer Rcpp]; }; ProPublicaR = derive2 { name="ProPublicaR"; version="1.1.1"; sha256="08bhqm64r79ywj394l1ywwcsjc79wzi85wlbp5xnr49bxzaysfp1"; depends=[config dplyr httr lubridate stringr]; }; @@ -3802,8 +3816,8 @@ in with self; { Q7 = derive2 { name="Q7"; version="0.1.0"; sha256="09jhqraajvlm7iiri4f7xlllkcx8q5h3sg472ishj47wg5qf2rym"; depends=[magrittr]; }; QAIG = derive2 { name="QAIG"; version="0.1.7"; sha256="04ygizvplvrzhf1p0vwj75x7k8sl0ym5zbrsvn63y983awih2p6i"; depends=[Formula stringr]; }; QBAsyDist = derive2 { name="QBAsyDist"; version="0.1.2"; sha256="1yql29npaq9yz02bv3hqf5m2mhscjms7qqf4vlaxm8s665rxcxad"; depends=[ald Deriv GoFKernel locpol nloptr quantreg scdensity zipfR]; }; - QBMS = derive2 { name="QBMS"; version="0.6"; sha256="083asm4qck29n7mm0b39h1gv7mbsa62w7xn16vy7cmyim9si5h3z"; depends=[httr jsonlite]; }; - QCA = derive2 { name="QCA"; version="3.14"; sha256="1c4fkrvr066hf5kl1s1l02gcjcxfjsfs7blwamgmjdk6hq4hgsyh"; depends=[admisc shiny venn]; }; + QBMS = derive2 { name="QBMS"; version="0.7.0"; sha256="14mq0l2ih6vchn7q2ssscxyrhrvfic3hnb4qyhd6sfy9a8cs8klm"; depends=[httr jsonlite]; }; + QCA = derive2 { name="QCA"; version="3.15"; sha256="1rijfdslq44w8abamplhj5f0l9jq43jcklcza64rfyxqfavc8mia"; depends=[admisc shiny venn]; }; QCAcluster = derive2 { name="QCAcluster"; version="0.1.0"; sha256="094p11c9arry793zibr8x3xhpbrym9bfky95nds53g3yliprdd63"; depends=[data_table magrittr plyr purrr QCA rlist stringi testit UpSetR]; }; QCAfalsePositive = derive2 { name="QCAfalsePositive"; version="1.1.1"; sha256="03qzb6vdnbri52gfx3laz14988p2swdv9m8i5z7gpsv3f3bjrxbp"; depends=[]; }; QCApro = derive2 { name="QCApro"; version="1.1-2"; sha256="1glfb1x1h05cs07nq5glqvlil58wp3c0kaxi1l7k94y797i8r7hq"; depends=[lpSolve]; }; @@ -3821,6 +3835,7 @@ in with self; { QGglmm = derive2 { name="QGglmm"; version="0.7.4"; sha256="0ghvicz4ia1180byj28lmg49889hqhb94g1jrkhm6hnzgqbjnfmd"; depends=[cubature]; }; QHOT = derive2 { name="QHOT"; version="0.1.0"; sha256="02z0n2jawd6m7bvyvpcy0j13p1c0zm036g62n56xva18qnq5c9lb"; depends=[]; }; QHScrnomo = derive2 { name="QHScrnomo"; version="2.2.0"; sha256="1g7gx1mhvqnldqwi9dx5f7nxqrra9mgfn5rq467f1nhlv6m2kzn6"; depends=[cmprsk Hmisc rms]; }; + QI = derive2 { name="QI"; version="0.1.0"; sha256="1r65xq892mga54dfbh5va5zji5d1dx8k0fy611kbdviwqf0dfhx5"; depends=[ggplot2]; }; QLearning = derive2 { name="QLearning"; version="0.1.1"; sha256="1bx77yxsnzh0ny3ghala5fw54lxzrxqk9s32qk3dzvfbyp4paggn"; depends=[]; }; QPmin = derive2 { name="QPmin"; version="0.5-1"; sha256="1hfvbi2qfynnkg2pmr7qsw75bmijwglnxchbzxcbikm5yw3sd2mz"; depends=[Matrix]; }; QQperm = derive2 { name="QQperm"; version="1.0.1"; sha256="06xhv54zgnx8i22j23a0dqxhh7my416idpkkwq93qd1rdzgamzc8"; depends=[]; }; @@ -3831,10 +3846,10 @@ in with self; { QRank = derive2 { name="QRank"; version="1.0"; sha256="1f924r5bf5vjfl12hk1n5m3f94g30f6vmvzq2bn8295dflyndck0"; depends=[quantreg]; }; QRegVCM = derive2 { name="QRegVCM"; version="1.2"; sha256="0fcydkf6r2qxd59ylr8vn76bkxks91v58gfzvq3rjd5mqf9vsaaq"; depends=[quantreg SparseM truncSP]; }; QSARdata = derive2 { name="QSARdata"; version="1.3"; sha256="0dhldnh0jzzb4assycc0l14s45ymvha48w04jbnr34lrwgr9krh4"; depends=[]; }; - QTL_gCIMapping = derive2 { name="QTL.gCIMapping"; version="3.3.1"; sha256="01lxa52fm6pzicjg252fxqy9hcj0rf511nzc3fcq25cfi9cly0v1"; depends=[data_table doParallel foreach glmnet MASS openxlsx qtl Rcpp stringr]; }; + QTL_gCIMapping = derive2 { name="QTL.gCIMapping"; version="3.4"; sha256="17f2xmgklbi8kicv7v951zm3bf1q4bdx9lcfbxpac3i7xm985fgr"; depends=[data_table doParallel foreach glmnet lars MASS openxlsx qtl Rcpp readxl stringr]; }; QTL_gCIMapping_GUI = derive2 { name="QTL.gCIMapping.GUI"; version="2.1.1"; sha256="0a155vl869i3li2i67b89p056x50ycqp9yk0ll5g3fp3xcdl80zs"; depends=[data_table doParallel foreach glmnet MASS openxlsx qtl QTL_gCIMapping Rcpp shiny stringr]; }; QTLEMM = derive2 { name="QTLEMM"; version="1.1.0"; sha256="0gwxrsbpbn1v3z0yal8qrnamzq1gjax9d9nja8bbcgw8cbf3gamf"; depends=[mvtnorm]; }; - QTLRel = derive2 { name="QTLRel"; version="1.8"; sha256="0lalxscwyih6657ir4c24gsc09a70pkmd2s6li603bk75i8lx5vl"; depends=[gdata lattice]; }; + QTLRel = derive2 { name="QTLRel"; version="1.9"; sha256="10lydj6zgijk2dxkncp35vrvic1v2s3v1zv44w7xi1i3wb3ifksx"; depends=[gdata lattice]; }; QTOCen = derive2 { name="QTOCen"; version="0.1.1"; sha256="0wlbxk1rd56k02jf3pfzbx6xx5mmf6sb7gvds0067cvb7m42ghcr"; depends=[MatrixModels quantreg Rdpack rgenoud survival]; }; QUALYPSO = derive2 { name="QUALYPSO"; version="1.2"; sha256="0hp99hhlv7rijn34ncshpvbnmhbx3f5km7bzr0z7yr7l3j1vx3sc"; depends=[doParallel expm foreach MASS Rfast]; }; QWDAP = derive2 { name="QWDAP"; version="1.1.11"; sha256="1kin58d2kaxy1zyzln95xxj8lrjir3zq9gfc2c026sq2pcaqlxkv"; depends=[CORElearn MTS pls progress StepReg]; }; @@ -3844,11 +3859,11 @@ in with self; { Qtools = derive2 { name="Qtools"; version="1.5.5"; sha256="0kmd5cd299gjw5qbk8yhlzxcwa3ykrr36zcpk773mykyz57q46hb"; depends=[boot glmx gtools MASS Matrix np numDeriv quantreg Rcpp RcppArmadillo]; }; QuACN = derive2 { name="QuACN"; version="1.8.0"; sha256="1597blp8gqc5djvbgpfzi8wamvy0x50wh5amxj9cy99qa0jlglxi"; depends=[combinat graph igraph RBGL]; }; QuClu = derive2 { name="QuClu"; version="0.1.0"; sha256="0a2malh9vz5jcjgdx4d98k0c61vz3ip8ynqh5i85x8hzcby11qgj"; depends=[]; }; + QuESTr = derive2 { name="QuESTr"; version="0.1.1"; sha256="1vvvraqgy570dj86km4qpiax4a0zhfym94am0fn6ld43p3iixg02"; depends=[ggplot2 kernlab]; }; QuadRoot = derive2 { name="QuadRoot"; version="0.2.0"; sha256="0p6d8s3qrynaky3xv7srh7qrpm6b0xrlq70m8gqsfddlgrvxl668"; depends=[]; }; QualInt = derive2 { name="QualInt"; version="1.0.0"; sha256="1ms96m3nz54848gm9kdcydnk5kn2i8p1rgl2dwn7cqcqblfvsr4j"; depends=[ggplot2 survival]; }; Quandl = derive2 { name="Quandl"; version="2.11.0"; sha256="1bsba6blbcq0my8wm0qcy0qabbgx344gjljnjwaqfrqkjcphf5xs"; depends=[httr jsonlite xts zoo]; }; QuantNorm = derive2 { name="QuantNorm"; version="1.0.5"; sha256="1hds9ybwsgnmcpa22vlmgdq02ilhn0c6a7z1qjiq4i5iqjd4gwf6"; depends=[]; }; - QuantPsyc = derive2 { name="QuantPsyc"; version="1.5"; sha256="1i9bh88r8zxndzjqsj14qw64gnvm5a9kvhjhzk3qsrvl3qzjgh93"; depends=[boot MASS]; }; QuantTools = derive2 { name="QuantTools"; version="0.5.7.1"; sha256="1nkf7ihzfwgz7svh1jybgcvqwbim2dqzi00l4m9pma463va4q19d"; depends=[data_table fasttime R6 Rcpp RCurl readxl]; }; QuantileGH = derive2 { name="QuantileGH"; version="0.1.1"; sha256="0ah1l5zzlsda2s6x0i4rcln8smg52jwpxcaf52zfarfbw30a88jp"; depends=[ggplot2 goftest LaplacesDemon rstpm2 scales tclust]; }; QuantileGradeR = derive2 { name="QuantileGradeR"; version="0.1.1"; sha256="1zwc6bg636gk8zll7wpznd3pzl611hcj2fmzp8b9505rra13p0g2"; depends=[]; }; @@ -3878,7 +3893,7 @@ in with self; { R2HTML = derive2 { name="R2HTML"; version="2.3.2"; sha256="00kxny7hajs9r2kw63qk7d03ggdxx2j1g8vbrmzp806y8aczvik9"; depends=[]; }; R2MLwiN = derive2 { name="R2MLwiN"; version="0.8-7"; sha256="1r12b0gy5747acn0jyf3n2f210a51pgl6vkk1rd4fbbj0dk5bwmf"; depends=[broom coda digest doParallel foreach foreign lattice Matrix memisc R2WinBUGS texreg tibble]; }; R2OpenBUGS = derive2 { name="R2OpenBUGS"; version="3.2-3.2.1"; sha256="0689aqa034xkbyy46m3sjanjkxrii4ma1crm5qw5kaqbx7dg153c"; depends=[boot coda]; }; - R2SWF = derive2 { name="R2SWF"; version="0.9-6"; sha256="0ag4w9cgxwfxfpywq3nv04n2mlwj07r04pg48pmlvkw0h7fjlfjl"; depends=[sysfonts]; }; + R2SWF = derive2 { name="R2SWF"; version="0.9-7"; sha256="1pr3klgb731zwhwkz2c0wj2mvhy5qixzg1x451ik683ycni81qlw"; depends=[sysfonts]; }; R2WinBUGS = derive2 { name="R2WinBUGS"; version="2.1-21"; sha256="0k8k214x712vjj2k1am4zzf6scccs3b98ysiz4lwxpzm818wp1ps"; depends=[boot coda]; }; R2admb = derive2 { name="R2admb"; version="0.7.16.2"; sha256="1gwp850ff76lqqn6amj75rjqb1szk6x2vlhqgwng4z45i56bmdf7"; depends=[coda lattice]; }; R2jags = derive2 { name="R2jags"; version="0.7-1"; sha256="0si2f0lmnpjcsmy54k51kwj1fkx24dshiidv46h8j2xjq1hp429v"; depends=[abind coda R2WinBUGS rjags]; }; @@ -3922,7 +3937,6 @@ in with self; { RBPcurve = derive2 { name="RBPcurve"; version="1.2"; sha256="0zkfvnhm780vid4qqdrx9mnc6jxxrmrnq47pqvk35rm3m4l96782"; depends=[BBmisc checkmate mlr shape TeachingDemos]; }; RBaseX = derive2 { name="RBaseX"; version="1.0.0"; sha256="0nj9sc14bc0m0xkdqnc3h7frcn4y0wbdpr6wnd8kvnipcrr3jcrl"; depends=[data_table dplyr httr magrittr openssl pingr R6 RCurl rex stringr tibble]; }; RBesT = derive2 { name="RBesT"; version="1.6-3"; sha256="0nbqkxsi6di4sd26l9c212sjs2lsvnabwbnf0cx00hmxrxzy0lhl"; depends=[assertthat bayesplot BH checkmate dplyr Formula ggplot2 mvtnorm Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; - RBestMatch = derive2 { name="RBestMatch"; version="0.1.1"; sha256="1nx1dnhlqi4gad1yw6h91av911wv6dap252hza98dgjysv46spya"; depends=[DiPs mvnfast plyr]; }; RBitmoji = derive2 { name="RBitmoji"; version="0.0.2"; sha256="1v9qj3vmqsvnccsy735nbflmd81183h2flm0f1ckd4kl08r2fr3f"; depends=[getPass httr jsonlite png RCurl]; }; RBtest = derive2 { name="RBtest"; version="1.1"; sha256="09da721zfj6cw4i9gifn5f0sv3nj0qfjb96c5w9g9gzx55ihssnk"; depends=[mice nnet psych]; }; RCA = derive2 { name="RCA"; version="2.0"; sha256="0pidb5czrf0dc3ywy6cwm5akgsc62pvf94kfyxibzmd1favykx1h"; depends=[gplots igraph]; }; @@ -3930,28 +3944,29 @@ in with self; { RCALI = derive2 { name="RCALI"; version="0.3.1"; sha256="0hc7h55qi8bpmp9rfh1wgxqs28kbs4yqxch2jlgl42vk5383askq"; depends=[splancs]; }; RCBR = derive2 { name="RCBR"; version="0.5.9"; sha256="1nxaf485jfg1kr80bxwczf27xz5ab7yz61c5l3bg9192jdf432ql"; depends=[Formula Matrix mvtnorm orthopolynom REBayes Rmosek]; }; RCCPCA = derive2 { name="RCCPCA"; version="0.1.0"; sha256="0nix6d8cxi64qfnsk00rpzq9kf07a5skc8zkvywl2y2aw6wrlvnd"; depends=[]; }; + RCDT = derive2 { name="RCDT"; version="1.0.0"; sha256="1l72dbgxkkhv4v8mjrz1zsq3jhvan4krgkjbjyd9hd5faj7hhrcy"; depends=[gplots randomcoloR Rcpp RcppArmadillo]; }; RCEIM = derive2 { name="RCEIM"; version="0.3"; sha256="1kil5r88b6lf8vxmswz0wn0hhjxjm8jmlcl5kxjwl6fwjyy2z120"; depends=[]; }; RCGLS = derive2 { name="RCGLS"; version="1.0.3"; sha256="12mmfs91fmhdxdxr7q16hnjlg7bz2bbkf8chld4cyf8clnflzvsj"; depends=[ncdf4 raster RCurl sp]; }; - RCLabels = derive2 { name="RCLabels"; version="0.1.0"; sha256="0p41i2cxv81g57xv1vba2dzn2xqpv7gy04wpyaxg325xh3zf1mf0"; depends=[assertthat Hmisc magrittr purrr]; }; + RCLabels = derive2 { name="RCLabels"; version="0.1.1"; sha256="1nvjq40labgrrn3lbyvnk9zir0ghgxkqrniddp4w7wffsfz4dj00"; depends=[assertthat Hmisc magrittr purrr]; }; RCMinification = derive2 { name="RCMinification"; version="1.0"; sha256="1n8rb5lz0bansggma8gs45xbmmzh98xcsg1vcwwviv2zgq8ww7jf"; depends=[]; }; - RCPA3 = derive2 { name="RCPA3"; version="1.0.1"; sha256="07avk7m8w8ky72c5dq8bkr44vlvgglhfzgvx7s8cjbjn01m7l64j"; depends=[beepr car descr haven Hmisc knitr lmtest survey weights]; }; + RCPA3 = derive2 { name="RCPA3"; version="1.1.1"; sha256="0zq700g7gwnf3rw0zd4m4h0rhp10d4ar5fdxwzbkn708c2m4znxg"; depends=[beepr car descr haven Hmisc knitr lmtest survey weights]; }; RCPmod = derive2 { name="RCPmod"; version="2.190"; sha256="1r24g8fcizyqzgp0da90sxpwalgcsgz2b168j2smpylxraiqb037"; depends=[fishMod glmnet gtools MASS]; }; RCRnorm = derive2 { name="RCRnorm"; version="0.0.2"; sha256="1mz1jb7mc9c47hbk9flnddny4zir6r2k5qis30iynwqny521l6ln"; depends=[truncnorm]; }; RCSF = derive2 { name="RCSF"; version="1.0.2"; sha256="1hjl7qsdgcddn3nh2likndhfhnw9gj3453xqq96gddgb1y0m3bh1"; depends=[Rcpp]; }; RCT = derive2 { name="RCT"; version="1.1.1"; sha256="01ir440zgxjvzwn5vazxib0w14nqy7lk7glwvba39xqghb3xw85z"; depends=[broom dplyr forcats ggplot2 glue lfe magrittr MASS pracma purrr rlang stringr tidyr tidyselect]; }; - RCarb = derive2 { name="RCarb"; version="0.1.4"; sha256="0mlas45ypwdkk6gr35fhsrjgn8am06ikh123drmky1yj1kkg6p76"; depends=[interp matrixStats]; }; + RCarb = derive2 { name="RCarb"; version="0.1.5"; sha256="1ww10kzc6lhhfsipfdf005ic2wf6kmr5dyahsj4bi2jp2fbh2g0m"; depends=[interp matrixStats]; }; RCassandra = derive2 { name="RCassandra"; version="0.1-3"; sha256="0xa241s81cyw6lfjb522f2mlyrd0gav9yz3z5jab9hpdpgg9ri38"; depends=[]; }; RChest = derive2 { name="RChest"; version="1.0.3"; sha256="112y6g1lyk3wky825g77sy49wgqs8vqdi90lrp0qza6cqjg381mq"; depends=[Rdpack reticulate]; }; RChronoModel = derive2 { name="RChronoModel"; version="0.4"; sha256="0haqxwic160pnnm90bgchzxmsdwmi6m97i9xrh8js8bp2xn76l5f"; depends=[hdrcde]; }; RCircos = derive2 { name="RCircos"; version="1.2.2"; sha256="1z0aam60p1b6q7csn50rrwdilm07myr05bw54s9ah8idzyxc7gav"; depends=[]; }; + RClickhouse = derive2 { name="RClickhouse"; version="0.6.3"; sha256="1xvx098amys1816lkb1gdz5wz5lp58dw9bp9f4dlgbzjdl027ns5"; depends=[bit64 DBI dbplyr dplyr Rcpp]; }; RClimacell = derive2 { name="RClimacell"; version="0.1.4"; sha256="03w2psiix74d2cbaz06bk77pclc6lfjhfdi057rdmw4nv3xv1fqi"; depends=[assertthat dplyr httr lubridate magrittr rlang stringr tibble tidyr tidyselect]; }; - RClone = derive2 { name="RClone"; version="1.0.3"; sha256="1zcb7s88qkpcbkhvawggsckzs5d9s9l9kr2c2njrr86ymq7lgwdj"; depends=[]; }; RColetum = derive2 { name="RColetum"; version="0.2.1"; sha256="1hgk9p234m3w49sw2j2rg8c14z3gz1mabvb69b1bxrg7f1mz9slg"; depends=[dplyr httr jsonlite]; }; RColorBrewer = derive2 { name="RColorBrewer"; version="1.1-2"; sha256="1pfcl8z1pnsssfaaz9dvdckyfnnc6rcq56dhislbf571hhg7isgk"; depends=[]; }; RConics = derive2 { name="RConics"; version="1.0"; sha256="1lwr7hi1102gm8fi9k5ra24s0rjmnkccihhqn3byckqx6y8kq7ds"; depends=[]; }; RCreliability = derive2 { name="RCreliability"; version="0.1.0"; sha256="083n6ix9yjnv4aafp11qac891gdhk62mhxmwkx9z3i0sxddwdb6r"; depends=[mgcv sandwich]; }; RCriteo = derive2 { name="RCriteo"; version="1.0.2"; sha256="1vyhnblw9zr5h6c25lf76p9vn95k8vr0hpq1sjkccdwl9yvsyhfy"; depends=[httr plyr RCurl XML]; }; - RCurl = derive2 { name="RCurl"; version="1.98-1.5"; sha256="13b9vlvknxlcmqgaaxb33srvyshsh59zmdsz4pfgz24i0fd7q63k"; depends=[bitops]; }; + RCurl = derive2 { name="RCurl"; version="1.98-1.6"; sha256="18nif4phr5vfhri07mnchiym0qfm31ak9nxvb2v9ac84mij6idbc"; depends=[bitops]; }; RCytoGPS = derive2 { name="RCytoGPS"; version="1.2.1"; sha256="1ppxyrm9h09kk6lnr6yg3n3xl08l9zp4rqliz92k5h42hmgj6f02"; depends=[rjson]; }; RCzechia = derive2 { name="RCzechia"; version="1.9.1"; sha256="1xwzbbap6h02z7jpzrgh0lmrzxssdjh0gr8fk0ivnl8zgfqrfk86"; depends=[curl httr jsonlite magrittr sf]; }; RDIDQ = derive2 { name="RDIDQ"; version="1.0"; sha256="09gincmxv20srh4h82ld1ifwncaibic9b30i56zhy0w35353pxm2"; depends=[]; }; @@ -3981,15 +3996,15 @@ in with self; { RESS = derive2 { name="RESS"; version="1.3"; sha256="1vddmifp47ia0sk35rnjpvw6gr9ygygafqczq268h17i1qs6ar22"; depends=[]; }; REST = derive2 { name="REST"; version="1.0.1"; sha256="16v89z7p9qkg7bsypf9vkrnbmb2n7gw3fqnfzbyxwj496wzxdv1x"; depends=[Rcmdr]; }; REdaS = derive2 { name="REdaS"; version="0.9.3"; sha256="09mmcvzgsxvrcq7sq3pw81pxgb1493p8lx8p5hhz8i42vshza6pn"; depends=[]; }; - REddyProc = derive2 { name="REddyProc"; version="1.3.1"; sha256="1n9ykffn7sw6y7ywg0hl9gldn9nrzjmis03ikfjjd8khz4jrqhgy"; depends=[bigleaf dplyr magrittr mlegp purrr Rcpp readr rlang solartime tibble]; }; + REddyProc = derive2 { name="REddyProc"; version="1.3.2"; sha256="1irclh991wp1ns2wb9dd88kqd5vg1kd8vk83a7w0kjpf20yqnkvp"; depends=[bigleaf dplyr magrittr purrr Rcpp readr rlang solartime tibble]; }; REddyProcNCDF = derive2 { name="REddyProcNCDF"; version="1.1.4"; sha256="099f4mzqj7pjlrs8rdjg44mjm0058x3pj2imrfvk892hmlk4r53p"; depends=[REddyProc]; }; REndo = derive2 { name="REndo"; version="2.4.3"; sha256="1h7ycxwklb9dbb8q0g9cagjl93jhbjc86l25s1imdp1rqfsv8i6c"; depends=[AER corpcor data_table Formula lme4 lmtest Matrix mvtnorm optimx Rcpp RcppEigen]; }; RFCCA = derive2 { name="RFCCA"; version="1.0.7"; sha256="0v0himz0zz6f52vvc5h33qiij0101zgihzwak8cw5193xzsfmr4g"; depends=[CCA PMA]; }; RFGLS = derive2 { name="RFGLS"; version="1.1"; sha256="13ggxj74h5b2hfhjyc50ndxznkvlg18j80m78hkzwh25d3948fsk"; depends=[bdsmatrix Matrix]; }; - RFLPtools = derive2 { name="RFLPtools"; version="1.9"; sha256="0vcxlvfhm6sksjs7zx45jss31310fvglzaj948j49xhf08rik0iz"; depends=[RColorBrewer]; }; + RFLPtools = derive2 { name="RFLPtools"; version="2.0"; sha256="07hw0hyyxqy31qakkb410gb3i0g5jvpmigv5cqhxqss2cwzpch0d"; depends=[RColorBrewer]; }; RFOC = derive2 { name="RFOC"; version="3.4-6"; sha256="0cs5wmpvrlag9aisbfiwkvwcb3skv5z4sawl30krmsq49mzj7yhd"; depends=[GEOmap MASS RPMG RSEIS splancs]; }; RFclust = derive2 { name="RFclust"; version="0.1.1"; sha256="0030d6831lvlhy7k9q5pin1jarzz4z242wncfsa520md1kvqs77d"; depends=[ConsensusClusterPlus iCluster randomForest]; }; - RFishBC = derive2 { name="RFishBC"; version="0.2.3"; sha256="1xhjsinb6dfr1zzzyvawc6bb10dnr3nbx86mi6lrzav42sbq31ni"; depends=[cli clisymbols crayon readbitmap rlang settings stringr tidyr withr]; }; + RFishBC = derive2 { name="RFishBC"; version="0.2.4"; sha256="1wh1j5lciff1vgjwrmc2hhr0yfq289l6k917pzhpl5bk6r4ml0fs"; depends=[cli clisymbols crayon readbitmap rlang settings stringr tidyr withr]; }; RFmerge = derive2 { name="RFmerge"; version="0.1-10"; sha256="1gcdd0a0czimzmzq2izskdaj26cc7qchrwlhssvnh5k59yx54r4l"; depends=[pbapply randomForest raster sf sp zoo]; }; RFormatter = derive2 { name="RFormatter"; version="0.1.1"; sha256="0jmzdc2cl4vvffsyfwp493fiygh9xinhv970qxp1667rw8wlap8l"; depends=[formatR]; }; RFpredInterval = derive2 { name="RFpredInterval"; version="1.0.5"; sha256="1ri62dfgwsbgrvjx7qn4mbv1p0mk2ynkrnw9s1klv31p2431rli5"; depends=[data_table data_tree DiagrammeR hdrcde ranger]; }; @@ -3997,7 +4012,6 @@ in with self; { RGA = derive2 { name="RGA"; version="0.4.2"; sha256="0pjizgvrh0gbjlyxlb3v93nhigg8rpq3mziv1qlp6r0s5y7cmpi9"; depends=[httr jsonlite lubridate plyr]; }; RGBM = derive2 { name="RGBM"; version="1.0-8"; sha256="0xd64g07y808nzs4zvbx6bxdpbj2ndqg6yzc3p0l43pxm4hyxva0"; depends=[doParallel foreach plyr]; }; RGCCA = derive2 { name="RGCCA"; version="2.1.2"; sha256="0zcxakqnmih0243y5b6r9nmcfanzxd6q344pd5bca5pnm3y43wr0"; depends=[Deriv MASS]; }; - RGCxGC = derive2 { name="RGCxGC"; version="1.1-2"; sha256="03ihqra8q50a98adgxrx8l7js963f41kg2fy3lxzh9zma4gzj62q"; depends=[colorRamps mixOmics ptw Rdpack RNetCDF]; }; RGE = derive2 { name="RGE"; version="1.0"; sha256="1ild1if10xicfapfcmydz1cgvn5fyydrik8qclb90i95bl9bs4ia"; depends=[coda Matrix MatrixModels]; }; RGENERATE = derive2 { name="RGENERATE"; version="1.3.7"; sha256="0w6hqrf2lr6qz79skml2vjpfwfv5vxj94rghxxa3rp9dqzhi7rc0"; depends=[magrittr RMAWGEN]; }; RGENERATEPREC = derive2 { name="RGENERATEPREC"; version="1.2.9"; sha256="0bnw77vny61pkhp9pb3v3ckz6immm4pp9f7qzyhc97646fci9ysl"; depends=[blockmatrix copula Matrix RGENERATE RMAWGEN stringr]; }; @@ -4035,14 +4049,14 @@ in with self; { RImpact = derive2 { name="RImpact"; version="1.0"; sha256="010bdq6r2fv4rs78kl1ixnw1di39v90ckh8bblzi0wv4adlbaza4"; depends=[]; }; RInSp = derive2 { name="RInSp"; version="1.2.4"; sha256="1rfikmrz1y7sx9qwsqh5ifqryf6218n9dbhfmk2w2vl2pdgw4xyr"; depends=[]; }; RInside = derive2 { name="RInside"; version="0.2.16"; sha256="03iabanmj5xkgq7r1n1rkmzjf2zz484637nmd1qg61ga53hsvr3s"; depends=[Rcpp]; }; - RItools = derive2 { name="RItools"; version="0.1-17"; sha256="1shcvkgsyjk9jmpf7icj1zjlvmqa11scmymc8cycnffax604frbm"; depends=[abind SparseM survival svd xtable]; }; + RItools = derive2 { name="RItools"; version="0.1-18"; sha256="0a591xm1nxrlhx3r6yss0ii0rv5gd6nfv4yzbmfzxjjaw3c8aiki"; depends=[abind SparseM survival svd xtable]; }; RJDBC = derive2 { name="RJDBC"; version="0.2-8"; sha256="1qfq1vjlxhg3hmb1169zkss7kng74jhjninqkfr3cca8x1fq9593"; depends=[DBI rJava]; }; RJDemetra = derive2 { name="RJDemetra"; version="0.1.9"; sha256="0av3yqibyipxvch5p2zv9r82pvpvl406nxd5pkm4pnbjndw09j3s"; depends=[rJava]; }; RJSDMX = derive2 { name="RJSDMX"; version="2.3-3"; sha256="02lbg82g4abng5vcn2g8ghvmg69q35my8smnbvd09yvha8hb49ps"; depends=[rJava zoo]; }; RJSONIO = derive2 { name="RJSONIO"; version="1.3-1.6"; sha256="17x0ayk7daprbc8w2hvb2jl9mfnw4dic9yc3sr5adcjqfzmcklc2"; depends=[]; }; RJSplot = derive2 { name="RJSplot"; version="2.7"; sha256="02q5isc137nx7qil2p3903xfsjwk54507rs72dfaiy6a8scys5j9"; depends=[]; }; RJafroc = derive2 { name="RJafroc"; version="2.0.1"; sha256="1vrjnqn1lv10945ba29zjlbkh3zyw28ppv4093v24lirw8vzmjp4"; depends=[bbmle binom dplyr ggplot2 mvtnorm numDeriv openxlsx Rcpp readxl stringr]; }; - RJcluster = derive2 { name="RJcluster"; version="3.2.3"; sha256="01cbq49iiyqhb6xdln0h1mv4bcx4sphb75xbd8q0d1m37zd01v56"; depends=[foreach infotheo matrixStats mclust profvis Rcpp RcppArmadillo rlang]; }; + RJcluster = derive2 { name="RJcluster"; version="3.2.4"; sha256="157dmi5gksq7s16ip4n9j5bj9s9bawl078rh13s1xxyr6f51yp09"; depends=[foreach infotheo matrixStats mclust profvis Rcpp RcppArmadillo rlang]; }; RKEA = derive2 { name="RKEA"; version="0.0-6"; sha256="1dncplg83b4zznh1zh90wr8jv5259cy93imrry86c5kqdijmhrrp"; depends=[rJava RKEAjars tm]; }; RKEAjars = derive2 { name="RKEAjars"; version="5.0-4"; sha256="1j4643xc8k3zy4rv0h8dd154jafihnjr43wzz3d93j11g2w9xhq3"; depends=[rJava]; }; RKEEL = derive2 { name="RKEEL"; version="1.3.3"; sha256="1m9jxi7nwkjaq172rx28fk73i144bny2h4aliqkvg2ffsdjyi685"; depends=[arules doParallel foreach gdata Matrix pmml R6 rJava RKEELdata RKEELjars XML]; }; @@ -4051,20 +4065,20 @@ in with self; { RKHSMetaMod = derive2 { name="RKHSMetaMod"; version="1.1"; sha256="1h8gqqfmlrzyj4n997yn13vqpaw2kwzl45gscy3fdhskzmyg0ss3"; depends=[Rcpp RcppEigen RcppGSL]; }; RKUM = derive2 { name="RKUM"; version="0.1.1"; sha256="1w0v6l61dm7xixnyywsc7xziixz7k9r1ja26zcy77nry5kn6v60q"; depends=[]; }; RKelly = derive2 { name="RKelly"; version="1.0"; sha256="0mkpc95j67rg2gcj2fc4w8kv4v31cpiyvh660y8kc2fjr5q4aj3l"; depends=[]; }; - RKorAPClient = derive2 { name="RKorAPClient"; version="0.7.1"; sha256="0caqj4dj6pnjzkaa3xjxblwwypff3fksv6cgkg7dxg0qznkyac7g"; depends=[broom dplyr ggplot2 highcharter httr jsonlite keyring lubridate magrittr PTXQC purrr R_cache stringr tibble tidyr urltools]; }; + RKorAPClient = derive2 { name="RKorAPClient"; version="0.7.2"; sha256="0rgk3bpxpdxqjgkbp75cfyykkzgz9fl8mfz504ng0j3mpj0mzaig"; depends=[broom curl dplyr ggplot2 highcharter httr jsonlite keyring lubridate magrittr PTXQC purrr R_cache stringr tibble tidyr urltools]; }; RLRsim = derive2 { name="RLRsim"; version="3.1-6"; sha256="1wkkibr250frsbfq70m9jdrylxb492zibf5w03z6zis98pjffssp"; depends=[lme4 mgcv nlme Rcpp]; }; RLT = derive2 { name="RLT"; version="3.2.4"; sha256="1vycsi213pcy5x9qpvim0nbsx4sk2125bficssv9v154w2xrgvf8"; depends=[]; }; RLeafAngle = derive2 { name="RLeafAngle"; version="1.0"; sha256="1anks22hn6qpac556p99kilkhc80h572dvcyz3wj1nqffdrhgrh3"; depends=[]; }; RLogicalOps = derive2 { name="RLogicalOps"; version="0.1"; sha256="1qyn80x3x3bb5wgzyzw6pxs8a6q26yq1fkmkz7f5wywsnrj8hzfj"; depends=[rstackdeque stringr]; }; - RLumCarlo = derive2 { name="RLumCarlo"; version="0.1.7"; sha256="1r70d68y3l43pb47wxhhbgbirnnx0hyaklvphlqrhnlkxp04r4xk"; depends=[abind doParallel foreach khroma magrittr Rcpp RcppArmadillo scatterplot3d]; }; - RLumModel = derive2 { name="RLumModel"; version="0.2.9"; sha256="15cllm4iywa74bmxlvasy7xkr86c4ghw2ii0656q0413dgasygjr"; depends=[deSolve Luminescence Rcpp RcppArmadillo]; }; + RLumCarlo = derive2 { name="RLumCarlo"; version="0.1.8"; sha256="0j4c3xfdxmdpkqpvhv8mybslwk4xvwpw6w8khpp8x3q7806z4wyx"; depends=[abind doParallel foreach khroma magrittr Rcpp RcppArmadillo scatterplot3d]; }; + RLumModel = derive2 { name="RLumModel"; version="0.2.10"; sha256="1klb7zvxksij517bi8xi68bia6y7jlp3ils659mmwdm2w0ljmwa6"; depends=[deSolve khroma Luminescence Rcpp RcppArmadillo]; }; RLumShiny = derive2 { name="RLumShiny"; version="0.2.3"; sha256="12dc30q41b1vha52mn9rr1m86ykp3yfsyxcxxwklavd60g76b8vd"; depends=[data_table DT googleVis knitr Luminescence markdown RCarb readxl rhandsontable shiny shinydashboard]; }; RM_weights = derive2 { name="RM.weights"; version="2.0"; sha256="1by1z7gwwx0jjhhvsjkr7f6m7n0x43bj080ah5275cja7xqr5nm6"; depends=[Hmisc psychotools]; }; - RM2 = derive2 { name="RM2"; version="0.0"; sha256="1v57nhwg8jrpv4zi22fhrphw0p0haynq13pg9k992sb0c72dx70a"; depends=[msm]; }; RM2006 = derive2 { name="RM2006"; version="0.1.1"; sha256="1bx2y58c8fkpv0d1sn5abxbajks3sbz2v00idnvbp7rw1i05i5q4"; depends=[]; }; RMAT = derive2 { name="RMAT"; version="0.2.0"; sha256="15bn9smlw9czryh6dvkpqxcp25sqd1vfq2cbs8wpg7nq58xyc6y4"; depends=[dplyr magrittr purrr]; }; RMAWGEN = derive2 { name="RMAWGEN"; version="1.3.7"; sha256="10hgssy59fcjbv333grpf6f3m7924hav66xxqhdlsdnwix19q7sb"; depends=[chron date vars]; }; RMBC = derive2 { name="RMBC"; version="0.1.0"; sha256="1fqbr28d09j01rmr9gylzkpvrd6bc9rnjbyzv06hmlx5mmjmzkb4"; depends=[ktaucenters MASS mvtnorm]; }; + RMCC = derive2 { name="RMCC"; version="0.1.0"; sha256="12ksv4yms1pgk7yj40yjmbc5rz1ai1mn8xd3a4w2pdx0mwjin6sz"; depends=[BH Rcpp]; }; RMKdiscrete = derive2 { name="RMKdiscrete"; version="0.1"; sha256="0b4adw46sn98qmy4nxv5l5svcjrp5532x7slfhhgsskqx408lzjf"; depends=[]; }; RMLPCA = derive2 { name="RMLPCA"; version="0.0.1"; sha256="1xzh6fwl71dzdpbqgpkqnmdzdk8rblg6n1ddic5yxxfvzg3bh13x"; depends=[Matrix pracma RSpectra]; }; RMOA = derive2 { name="RMOA"; version="1.0.2"; sha256="16j01m9drrhxr1vv5lwg3x42jc0ivbm3p2pkjhmsv6m6a87hhggl"; depends=[rJava RMOAjars]; }; @@ -4074,7 +4088,7 @@ in with self; { RMTL = derive2 { name="RMTL"; version="0.9"; sha256="08da67wvzmibziqhnlzh43sydaihk4rsq2k5hs6ih3jkkidrhlgv"; depends=[corpcor doParallel foreach MASS psych]; }; RMThreshold = derive2 { name="RMThreshold"; version="1.1"; sha256="0wkc42vcggib002ad6ch43h6avpdgl12szrrrfd2p0wl72cwn5n1"; depends=[Matrix png]; }; RMTstat = derive2 { name="RMTstat"; version="0.3"; sha256="1nn25q4kmh9kj975sxkrpa97vh5irqrlqhwsfinbck6h6ia4rsw1"; depends=[]; }; - RMVL = derive2 { name="RMVL"; version="0.0.4.3"; sha256="039xcwyk3mb9ns5kp6cdp06di9f77a65gfx04rah7qdnfvr7zirg"; depends=[]; }; + RMVL = derive2 { name="RMVL"; version="0.0.4.4"; sha256="01w649iw62kpyp4a3lyrqcfb8iqcd0v8zwz6aq1cnxhw04hz0c1w"; depends=[]; }; RMaCzek = derive2 { name="RMaCzek"; version="1.3.5"; sha256="19hb25rl4fmyyaklj0jlvdh41zg9k2d6hkmm4ixvh8y9dbp675c8"; depends=[GA seriation]; }; RMallow = derive2 { name="RMallow"; version="1.1"; sha256="1s6a3347739rfc8rrh2773b278gcbp8hf5j5psm61fz7bavy9gcj"; depends=[combinat]; }; RMariaDB = derive2 { name="RMariaDB"; version="1.2.1"; sha256="032zrwqf2w1cfkm0ryblc4sms2y5cl0fzyp0ijlk7kjld04nl5y9"; depends=[bit64 blob DBI hms lubridate plogr Rcpp rlang]; }; @@ -4095,14 +4109,15 @@ in with self; { RNHANES = derive2 { name="RNHANES"; version="1.1.0"; sha256="045ykpgxvc22blbp47ysbk6a6x4akjd39pjr114cr23s7f48g6h4"; depends=[dplyr foreign rvest survey xml2]; }; RNOmni = derive2 { name="RNOmni"; version="1.0.0"; sha256="1zn0yswycvzc3bm5rd7n84b2jbb5rdl66m4x5miz9pv7h6wsckkv"; depends=[plyr Rcpp RcppArmadillo]; }; RNaviCell = derive2 { name="RNaviCell"; version="0.2"; sha256="15k8hkagn5520fy7x672fy329s2v7l0x44s44f6v7ql9mmg4b635"; depends=[RCurl RJSONIO]; }; - RNeXML = derive2 { name="RNeXML"; version="2.4.5"; sha256="1wsl4xq9w5bp3wk69dw57bg0qcw1vs6ajwya4p0w1r00ck5pwrib"; depends=[ape dplyr httr lazyeval plyr reshape2 stringi stringr tidyr uuid XML xml2]; }; + RNeXML = derive2 { name="RNeXML"; version="2.4.6"; sha256="0k56brcg80mvx35hgc5gj8arwba4k7q0075g38qp0qgq9d1b87cs"; depends=[ape dplyr httr lazyeval plyr reshape2 rlang stringi stringr tidyr uuid XML xml2]; }; RNentropy = derive2 { name="RNentropy"; version="1.2.2"; sha256="0chvmrvpyyghilwb63y6pd1zp94i5qhpv5w19x9nw0ypk86pp2dj"; depends=[]; }; RNetCDF = derive2 { name="RNetCDF"; version="2.5-2"; sha256="0i5a0v6ajabn59y73sbm5j85ppgpchr1ggm27xl8m4x07jj4dzpq"; depends=[]; }; RNetLogo = derive2 { name="RNetLogo"; version="1.0-4"; sha256="1z7jp454k197c0zbkn64zmf25wadkiznv3w2csgiz917cbx6xcn1"; depends=[igraph rJava]; }; RNewsflow = derive2 { name="RNewsflow"; version="1.2.6"; sha256="06hz5fim5ad8kbpc4crs9vdn7k9q5phhzscd46s4xk0b3n0i8wi1"; depends=[data_table igraph Matrix quanteda Rcpp RcppEigen RcppProgress scales stringi tm wordcloud]; }; - RNifti = derive2 { name="RNifti"; version="1.3.1"; sha256="0bz10ar6hrgkvlzh9j2im24kwi3s2nnax668z40a2wj6s5xghqlr"; depends=[Rcpp]; }; + RNifti = derive2 { name="RNifti"; version="1.4.0"; sha256="0kkj9dby85iwnlqb7zwrh1xidlvqip7i1mbgckb5qg4b0a3zgibc"; depends=[Rcpp]; }; RNiftyReg = derive2 { name="RNiftyReg"; version="2.7.0"; sha256="0y7s2zcjjnb9jakdhyd6hmdj9axdpvbnhijs2finnlwc0d09jpz1"; depends=[ore Rcpp RcppEigen RNifti]; }; ROAuth = derive2 { name="ROAuth"; version="0.9.6"; sha256="0vhsp8qybrl94898m2znqs7hmlnlbsh8sm0q093dwdb2lzrqww4m"; depends=[digest RCurl]; }; + ROCFTP_MMS = derive2 { name="ROCFTP.MMS"; version="1.0.0"; sha256="022cz5vh79c50r31rxn5fjghl65wn1ns8xdgq3b05hjf9psjvg4x"; depends=[vctrs]; }; ROCR = derive2 { name="ROCR"; version="1.0-11"; sha256="0amvvrkiflmr3qygrsgrsja4gaf2v6r6h6i2bgpsm8r069vmlf2p"; depends=[gplots]; }; ROCS = derive2 { name="ROCS"; version="1.3"; sha256="11vdf8701ap6ya7c7kx9jhvg7qfc6vkij3jridna6f4xj384grki"; depends=[poibin rgl]; }; ROCaggregator = derive2 { name="ROCaggregator"; version="1.0.1"; sha256="1l53z1xz5ww0bdd3pcmscmm4ypg0fdl4a03vv8ya2jk0zzlndlnq"; depends=[magrittr]; }; @@ -4138,7 +4153,7 @@ in with self; { ROP = derive2 { name="ROP"; version="1.0"; sha256="12gh83r3hp1qdmw3p5rr1wfhsh90pirx67q456gl9ai6zgd8nkq8"; depends=[ROCR]; }; ROSE = derive2 { name="ROSE"; version="0.0-4"; sha256="0y3v9zkgaxpv4f4zn22ra1gkkqg5hdz8js47ppciqahfydjbfl3p"; depends=[]; }; ROlogit = derive2 { name="ROlogit"; version="0.1.2"; sha256="09j9c24f7plzpnnhpmzdi4gapb7w1377ksjwk6i2xpyr4bfsrr5k"; depends=[evd survival]; }; - ROpenCVLite = derive2 { name="ROpenCVLite"; version="4.52.0"; sha256="1vm50h7ys24az57pbnpgkzkpkdbvhb98rm09yb3z0wvnwyx7k8qv"; depends=[pkgbuild]; }; + ROpenCVLite = derive2 { name="ROpenCVLite"; version="4.52.1"; sha256="0fwbizw9rb44fqi4hry0s0i44l7bs36wqsjjk49b79728b6sirpy"; depends=[pkgbuild]; }; ROpenDota = derive2 { name="ROpenDota"; version="0.1.2"; sha256="17s73yj2w5hlpy09ad83m4s2d9shg5h4zg64wvbp1ivyvpp7l308"; depends=[jsonlite RCurl]; }; ROpenFIGI = derive2 { name="ROpenFIGI"; version="0.2.8"; sha256="0fvd25vsqkgi3jv4s2lnfag5qksyzyb48d7rhfw6z8piz37n4xaj"; depends=[httr jsonlite]; }; ROpenWeatherMap = derive2 { name="ROpenWeatherMap"; version="1.1"; sha256="0h1yw93v06bx8svhghh1fsrf837qax9896klh64b06djpgg9ngb9"; depends=[httr jsonlite RCurl]; }; @@ -4148,7 +4163,6 @@ in with self; { ROptSpace = derive2 { name="ROptSpace"; version="0.2.3"; sha256="18fz285hr4fdkkbs4b13gmwz0sqbgk6di6m3c6ic0wvs35mpmcfz"; depends=[Rcpp RcppArmadillo Rdpack]; }; ROracle = derive2 { name="ROracle"; version="1.3-1.1"; sha256="1k5w6fi1f83mhlc8hx6y305llcwxl22h6lpkib1yvm4557k1c7zz"; depends=[DBI]; }; RPANDA = derive2 { name="RPANDA"; version="2.0"; sha256="1xszarf0857msiq27ghq8vz0sr8lziajwssm07k46x7p3jk4rk3b"; depends=[ape bipartite cluster coda deSolve fields fpc glassoFast igraph Matrix mvMORPH phytools picante pspline pvclust raster Rmpfr TESS]; }; - RPCLR = derive2 { name="RPCLR"; version="1.0"; sha256="03kpyszsjb656lfwx2yszv0a9ygxs1x1dla6mpkhcnqw00684fab"; depends=[MASS survival]; }; RPEGLMEN = derive2 { name="RPEGLMEN"; version="1.1.1"; sha256="1hm68f6ipiy2518viz182psqgh5krq9aihid0njg4817cyssg95z"; depends=[Rcpp RcppEigen RPEIF]; }; RPEIF = derive2 { name="RPEIF"; version="1.2.4"; sha256="002f8753gfqx1ddcb60hz7xy6l19zvp3d3arackkqjh26zcw1paj"; depends=[RobStatTM xts zoo]; }; RPESE = derive2 { name="RPESE"; version="1.2.4"; sha256="0m80b5k0jq0yglb9gnzxl4h8j5y9ir2npni7gdwil2kw6nnhrb3f"; depends=[boot RobStatTM RPEGLMEN RPEIF xts zoo]; }; @@ -4173,10 +4187,11 @@ in with self; { RQEntangle = derive2 { name="RQEntangle"; version="0.1.3"; sha256="178haddk8nnscy2vym3k2a3ca9lf6nl7rpjja8lxqdjninvhvwb2"; depends=[iterators itertools]; }; RQuantLib = derive2 { name="RQuantLib"; version="0.4.15"; sha256="18j3bm5imxbx888pywqhzfbc19b8xlll18jy0g4g8bskqycfqh69"; depends=[Rcpp zoo]; }; RRBoost = derive2 { name="RRBoost"; version="0.1"; sha256="0zp3csrpi0awk88m6sq5sf5v7j32q5sd4mwv61x6bblg991k404k"; depends=[RobStatTM rpart]; }; + RRF = derive2 { name="RRF"; version="1.9.3"; sha256="04mvnijxgmjinc6bbasvximbdlw78pldb6ym5dm32ap68jh5bxyy"; depends=[]; }; RRI = derive2 { name="RRI"; version="1.1"; sha256="0msdc5j5vx4snl8r3q5nn0mw2i80jds5pjykhmigcrx6jzg6h6i7"; depends=[Rcpp RcppArmadillo]; }; RRMLRfMC = derive2 { name="RRMLRfMC"; version="0.4.0"; sha256="0y8gs9rirrcjb89jqxr7rrp89pjal7lzcscnh4kmabhih3f2d729"; depends=[nnet]; }; RRNA = derive2 { name="RRNA"; version="1.0"; sha256="14rcqh95ygybci8hb8ays8ikb22g3850s9f3sgx3r4f0ky52dcba"; depends=[]; }; - RRPP = derive2 { name="RRPP"; version="1.1.2"; sha256="1h40gql8id8a0skvfnc2vra13g76lfhlhks4h7janjg3p4ykymib"; depends=[ape ggplot2 Matrix]; }; + RRPP = derive2 { name="RRPP"; version="1.2.1"; sha256="0pzm0i250pscgj403s5yfbxn9hyh0kmsrkljf55aa3smycic4hqa"; depends=[ape ggplot2 Matrix]; }; RRRR = derive2 { name="RRRR"; version="1.1.0"; sha256="0h5r668qn8hp4j4zhxhn4b3lqm138n6kc1c7vf95hmbh4ah6wzf7"; depends=[expm ggplot2 magrittr matrixcalc mvtnorm]; }; RRTCS = derive2 { name="RRTCS"; version="0.0.4"; sha256="16v6f5yvfq9l1b4h5mr4y0i2k404vdv354yz4k780w79qib7g39p"; depends=[sampling samplingVarEst]; }; RRate = derive2 { name="RRate"; version="1.0"; sha256="1q3f2gphdf50aijnk5xqfpxcqfd4jq7byb1gpb0vcnaxgi3a9lwm"; depends=[]; }; @@ -4199,14 +4214,14 @@ in with self; { RSNNS = derive2 { name="RSNNS"; version="0.4-14"; sha256="081c20dcac8xxb0sp7kwzm4b7h5jrgcxxsfckjbxbda95g5n4qkz"; depends=[Rcpp]; }; RSPS = derive2 { name="RSPS"; version="1.0"; sha256="0ynxhgnxsf27qm8r5d9lyd59zksnc3kvx35hy25vff8j3bg7fqgi"; depends=[gridExtra lattice plyr]; }; RSQL = derive2 { name="RSQL"; version="0.1.4"; sha256="0zda6cgsx1bd3xw2r9flsphbkrgma95qqv5vz70f234y9gkmc6v3"; depends=[DBI knitr lgr R6 RSQLite]; }; - RSQLite = derive2 { name="RSQLite"; version="2.2.9"; sha256="075vsnbkcwpwnn87b06mhbg2fflqhjvbylhbkg0d3v3rl7zg28s4"; depends=[bit64 blob DBI memoise pkgconfig plogr Rcpp]; }; + RSQLite = derive2 { name="RSQLite"; version="2.2.10"; sha256="1a00i24g4d4gvp7qmivpyfm24yfz4w4wsy2kplgfz0i0j0rzzbh6"; depends=[bit64 blob DBI memoise pkgconfig plogr Rcpp]; }; RSSL = derive2 { name="RSSL"; version="0.9.5"; sha256="1h94dhs5yl1i7n153rbmj883iz3hql0b0cr12357nk4nvf36yih8"; depends=[cluster dplyr ggplot2 kernlab MASS Matrix quadprog Rcpp RcppArmadillo reshape2 scales tidyr]; }; RSSOP = derive2 { name="RSSOP"; version="1.1"; sha256="119xrxpaf68qdb2kj2pbaja6im2nbxsgibb1bnlpnc3fcxkmqcsf"; depends=[]; }; RSSampling = derive2 { name="RSSampling"; version="1.0"; sha256="0p10l7qmksx4ysz1jb84f9nbqzig8wxhwy33yk8hq29nb5i4c9ik"; depends=[LearnBayes]; }; RSarules = derive2 { name="RSarules"; version="1.0"; sha256="0lrql4q45hyhqbix86ixl12mknnjbz3137gx2zkvqpz91bsk145j"; depends=[arules Matrix]; }; RSauceLabs = derive2 { name="RSauceLabs"; version="0.1.6"; sha256="1p7hw6vnlg6w5ggmfpc3q3s6n1fikjkjnxzz97jifiy0zwn5dp9i"; depends=[data_table httr jsonlite whisker xml2]; }; RScelestial = derive2 { name="RScelestial"; version="1.0.3"; sha256="1bxp3xl90s9fblm6d2mmsnws4iv9f3kxj8cs55kmbakz5dq4nqxc"; depends=[Rcpp]; }; - RSclient = derive2 { name="RSclient"; version="0.7-6"; sha256="0vhj2f7bgjcfbshbprqxqyxv6bxkfzn3gpjp7hqnw72da602igya"; depends=[]; }; + RSclient = derive2 { name="RSclient"; version="0.7-8"; sha256="0iy2y63yl35im6n8hg77gzfr6mk7z4yi4lpl50mig1jj9rvqw3n5"; depends=[]; }; RSeed = derive2 { name="RSeed"; version="0.1.60"; sha256="0rvb6w4z5c2wcdgx5w6vv7c8il8d0096pgv3fyvw21ag25z605jc"; depends=[graph RBGL sybil]; }; RSelenium = derive2 { name="RSelenium"; version="1.7.7"; sha256="1xn5fdbzmq7b1f5fc9ls23g177bmnd8bn4p4d8aafr6z3jwkmfir"; depends=[binman caTools httr openssl wdman XML]; }; RSentiment = derive2 { name="RSentiment"; version="2.2.2"; sha256="15d1llzxg1apkwykpb7pic2d5lfj9i9a55hab067wrz2yq5jsyfa"; depends=[NLP openNLP plyr stringr]; }; @@ -4220,7 +4235,7 @@ in with self; { RSpincalc = derive2 { name="RSpincalc"; version="1.0.2"; sha256="09fjwfz1bzpbca1bpzxj18ki8wh9mrr5h6k75sc97cyhlixqd37s"; depends=[]; }; RSqlParser = derive2 { name="RSqlParser"; version="1.5"; sha256="0q5wa7bq7m94xx8hcf9p29v5vvkrqzygs3v6yy5xl6jgvshvscvi"; depends=[stringi stringr]; }; RStata = derive2 { name="RStata"; version="1.1.1"; sha256="1wx6cz4567xkfplybmbwmw25snhlaxn48yi620cv6p5xqv458yp7"; depends=[foreign]; }; - RStoolbox = derive2 { name="RStoolbox"; version="0.2.6"; sha256="1pq0vxq53x8f0358qfq1rakb59cdfi4micp7hjb9fbz95q9am8mj"; depends=[caret codetools doParallel foreach geosphere ggplot2 raster Rcpp RcppArmadillo reshape2 rgdal rgeos sp XML]; }; + RStoolbox = derive2 { name="RStoolbox"; version="0.3.0"; sha256="1xjj3bm2brywl02n3d2n8n5zlbv2p98bzbmcx9yj6c2j5rcxhsz7"; depends=[caret codetools doParallel dplyr exactextractr foreach ggplot2 lifecycle raster Rcpp RcppArmadillo reshape2 rgdal sf sp terra XML]; }; RStorm = derive2 { name="RStorm"; version="1.0"; sha256="1n2kiy9b8w6rnv2zmzbl22grwibf619hadf2cjq1ch7rmbr7qb65"; depends=[plyr]; }; RStripe = derive2 { name="RStripe"; version="0.1"; sha256="0vp7zsd5xm8rf7196fivb76kkmxfx3gawxlyjhn9xqv92vawivra"; depends=[httr jsonlite RCurl]; }; RSurveillance = derive2 { name="RSurveillance"; version="0.2.1"; sha256="02jbm9xl2jg9cgq53i1cvj1rivhprgd07k1rxsayzrskvbmvyjpd"; depends=[epiR epitools mc2d]; }; @@ -4231,9 +4246,9 @@ in with self; { RTD = derive2 { name="RTD"; version="0.4.1"; sha256="0zsv62hx1y9q5a6rd8ri91ff64671b84jr3f88h0q4yni2mribhr"; depends=[dplyr httr jsonlite purrr RcppMsgPack readr urltools uuid]; }; RTDE = derive2 { name="RTDE"; version="0.2-1"; sha256="1dkv0g760384jmyypffl5kbnsancjx272j91ffpgmg3lmsy8nhqq"; depends=[]; }; RTIGER = derive2 { name="RTIGER"; version="0.99.0"; sha256="0g1qccjslf90lsc965klnkdkij16frfk3ig6yjpldh8j2yv66zg3"; depends=[e1071 GenomeInfoDb GenomicRanges ggplot2 IRanges JuliaCall qpdf reshape2 TailRank]; }; - RTL = derive2 { name="RTL"; version="0.1.91"; sha256="0950mpm6vx2kbx7fgin7131l1icmbibkm0nwcbxggspz4lw0rsrp"; depends=[dplyr fabletools feasts ggplot2 httr jsonlite lubridate magrittr plotly purrr RCurl readr rlang stringr tibble tidyquant tidyr timetk tsibble xts zoo]; }; + RTL = derive2 { name="RTL"; version="1.0.0"; sha256="19v9npbnr0hp6gk9minil53imjvhqhzzvq3fg3xlg2kdf0d4s87d"; depends=[cli dplyr fabletools feasts ggplot2 glue httr jsonlite lifecycle lubridate magrittr plotly purrr RCurl readr rlang stringr tibble tidyquant tidyr timetk tsibble withr xts zoo]; }; RTOMO = derive2 { name="RTOMO"; version="1.1-6"; sha256="03jb96ahzgp662vj2v65giv8ss61vad5w26kvq8hg9q06z879jza"; depends=[GEOmap RPMG RSEIS splancs]; }; - RTTWebClient = derive2 { name="RTTWebClient"; version="0.1.2"; sha256="0r5nkaypym79h5r7n8h932i08awkpzn5fygww0z5q7y5m6kchbmx"; depends=[base64enc data_table digest httr jsonlite withr]; }; + RTTWebClient = derive2 { name="RTTWebClient"; version="0.1.3"; sha256="1d4dmw7z90nih9bzajlyqgqvpfmpkxwyhw0w56q396kvw8k644cp"; depends=[base64enc data_table digest httr jsonlite withr]; }; RTaxometrics = derive2 { name="RTaxometrics"; version="3.2"; sha256="0nrj5iccxqj3nk28s9z6bncpih5zq2nz4pylmm0pkpl5dfz923m4"; depends=[]; }; RTextTools = derive2 { name="RTextTools"; version="1.4.3"; sha256="0fxjviqc36k06rn8xzbi8ylzzj9zgf3zsp6xv0kssakss1a45lzz"; depends=[caTools e1071 glmnet ipred nnet randomForest SparseM tau tm tree]; }; RTextureMetrics = derive2 { name="RTextureMetrics"; version="1.1"; sha256="0d0mvpmcpd62cvqlajrqp32lnvpflyf9bqvdzly2v8v1kb8274fc"; depends=[]; }; @@ -4242,7 +4257,7 @@ in with self; { RUVIIIC = derive2 { name="RUVIIIC"; version="1.0.19"; sha256="1px87p4nmdgkxwarsqyc91kmwr13dy16c1qqqc86qlwm2w46smf6"; depends=[progress Rcpp RcppEigen RcppProgress RSpectra]; }; RUnit = derive2 { name="RUnit"; version="0.4.32"; sha256="1wc1gwb7yw7phf8b0gkig6c23klya3ax11c6i4s0f049k42r78r3"; depends=[]; }; RVA = derive2 { name="RVA"; version="0.0.5"; sha256="1a0av2vhqnkc4w76q5dhds0p12icmkkxyr1d04rsd83srwkwh4fb"; depends=[circlize clusterProfiler ComplexHeatmap data_table dplyr edgeR ggplot2 ggpubr gridExtra GSEABase GSVAdata haven msigdbr org_Hs_eg_db plotly purrr rlang rWikiPathways stringr tibble tidyr XML]; }; - RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-81"; sha256="1niq4imvgn8v9lkcysfksb9mhmdkf3790sycfk8c85psrh9l294x"; depends=[ade4 boot car FactoMineR lme4 MASS mixOmics nnet pls pspearman vegan]; }; + RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-81-2"; sha256="137374nikk2jji1fnx1vnsj1v6n3s9kbif5rcvla0kbg3xn6ndps"; depends=[ade4 boot car FactoMineR lme4 MASS mixOmics nnet pls pspearman vegan]; }; RVCompare = derive2 { name="RVCompare"; version="0.1.5"; sha256="17ralm3xbzgi1ngblwf6pmpaz7c5vwkfinnpwyxvlrwi8mxi554h"; depends=[ggplot2 pracma Rcpp]; }; RVFam = derive2 { name="RVFam"; version="1.1"; sha256="0gw8rgq11zndnqmay6y3y5rmmljvwhxzm2pqa90vs5413dnchq92"; depends=[coxme kinship2 lme4 MASS Matrix survival]; }; RVIpkg = derive2 { name="RVIpkg"; version="0.2.8"; sha256="0hh3kqzfwbp0qc1v5baixnl3px54dwvljd1r23s8lxlg434pl7fz"; depends=[]; }; @@ -4259,8 +4274,8 @@ in with self; { RWekajars = derive2 { name="RWekajars"; version="3.9.3-2"; sha256="06nsylv65z9hxym1b6qnwllh306bq5phsgr0qn4nyr5im8cv1rhn"; depends=[rJava]; }; RWiener = derive2 { name="RWiener"; version="1.3-3"; sha256="0afrgflyfjv4jqm04had74zz4cs934zwvyxaan1r4qpg383kibpq"; depends=[]; }; RWildbook = derive2 { name="RWildbook"; version="0.9.3"; sha256="1pznzmv8n33hhj61h07fha1gzafcx705n8323cnz3mx6ziijfh28"; depends=[data_table jsonlite marked]; }; - RWmisc = derive2 { name="RWmisc"; version="0.1.1"; sha256="1p2ksnwwbp5dhj4lmz09fbghs010p7nhpx039lc96n1h7y6azzqs"; depends=[raster sf sp units]; }; - RWsearch = derive2 { name="RWsearch"; version="4.9.8"; sha256="068kbbh13a7j0h356dl0dy29221r37mjazvki7wpf64nb01r916d"; depends=[brew latexpdf networkD3 sig sos XML]; }; + RWmisc = derive2 { name="RWmisc"; version="0.1.2"; sha256="0wf593g8aif081v8vyqcffrzaffh1ifbba7mwmj4mnwcksballvw"; depends=[raster sf sp units]; }; + RWsearch = derive2 { name="RWsearch"; version="5.0.5"; sha256="161fnkl0dzk11wvzj7vz4807pjq33gvnhniw8ms2ipz0vmd0pk7c"; depends=[brew latexpdf networkD3 sig sos XML]; }; RXKCD = derive2 { name="RXKCD"; version="1.9.2"; sha256="1yk12ic6kdbwc44ppag2yfnga7xjmifkglhvcw93vc3qg469mm15"; depends=[jpeg plyr png RJSONIO]; }; RXMCDA = derive2 { name="RXMCDA"; version="1.5.5"; sha256="1ci73q8xf3xxqw8b7sk83v5vz2cqgcb4lkx7qi3hd1ff4xkz1fpa"; depends=[kappalab XML]; }; RXshrink = derive2 { name="RXshrink"; version="2.0"; sha256="105laxdjnqpkp74675asihcry6ahaihphkbnpxyi6xpskga0k1ka"; depends=[ellipse lars]; }; @@ -4303,7 +4318,7 @@ in with self; { RapidPolygonLookup = derive2 { name="RapidPolygonLookup"; version="0.1.1"; sha256="0h4snn3haa4a5rkafg98419by4nnz219wsm3y0dqgm4hw4bvha0g"; depends=[PBSmapping RANN RgoogleMaps sp]; }; RapidoPGS = derive2 { name="RapidoPGS"; version="2.1.0"; sha256="038x4q6h0pf062nhjivfbb74f43li35pgjl8w8rzwr5pcsbjsif8"; depends=[bigreadr bigsnpr coloc curl data_table dplyr GenomicRanges IRanges RCurl]; }; Raquifer = derive2 { name="Raquifer"; version="0.1.0"; sha256="148inkn6yiyvicw0b4kw99n172xsvhrrdx1khghqs966smjw54wy"; depends=[dplyr gsl magrittr pracma Rdpack]; }; - RareComb = derive2 { name="RareComb"; version="1.0"; sha256="09hrsxnw50033hlc45hrb9vvv8ycj1i9i11kpqnk0rp0vqph3lzl"; depends=[arules dplyr magrittr pwr reshape2 sqldf stringr tidyr]; }; + RareComb = derive2 { name="RareComb"; version="1.1"; sha256="0q22a61zd51ffnq30gmhba6paaaagmhrr6vx1mfw37fb9n5fpyn6"; depends=[arules dplyr magrittr pwr reshape2 sqldf stringr tidyr]; }; Rarefy = derive2 { name="Rarefy"; version="1.1"; sha256="1flpi5amv2q2kl75gab4bwv1b7nmsnr6lyanwwiky6zq0xridkw5"; depends=[ade4 adiv ape dplyr geiger vegan]; }; Rarity = derive2 { name="Rarity"; version="1.3-6"; sha256="1m742qrgc0c5vda9sb2q5n3ghmqnlnfhr1cfpxfs7s5ic707gmlb"; depends=[]; }; RaschSampler = derive2 { name="RaschSampler"; version="0.8-8"; sha256="0y7dkgv1cy6r1mbmyqm27qwl10rl12g1svpx9jkzq5hq0hnm2xhw"; depends=[]; }; @@ -4313,7 +4328,7 @@ in with self; { Ravages = derive2 { name="Ravages"; version="1.0.0"; sha256="1967s8hp6nd1a1d385rx6sp4hd01h0gcd7hvdakc2lh7xbdnlj8i"; depends=[bedr BH curl dfidx Formula gaston mlogit Rcpp RcppEigen RcppParallel]; }; RavenR = derive2 { name="RavenR"; version="2.1.7"; sha256="1aapipzsy389zl0b8p0p0zfm72syki8vv9n2zr54drb8vm33ipjs"; depends=[colorspace cowplot DiagrammeR dplyr dygraphs gdata ggplot2 igraph lubridate magrittr purrr Rcpp RCurl scales stringr tidyr visNetwork xts zoo]; }; RawHummus = derive2 { name="RawHummus"; version="0.2.1"; sha256="1x23mzqj13mns80pac4zmxj7c571y9k4qss2zmz6fza7hvarkdcf"; depends=[data_table dplyr kableExtra markdown plotly purrr RaMS RColorBrewer rmarkdown shiny shinycustomloader shinydashboard shinydashboardPlus shinyFiles shinyMatrix shinyvalidate]; }; - Rbeast = derive2 { name="Rbeast"; version="0.9.2"; sha256="1vmnmyj6470mm3wvb6dy5hb39hdjrm12lzwizlqvh9pjkvi339v3"; depends=[]; }; + Rbeast = derive2 { name="Rbeast"; version="0.9.3"; sha256="1mh9gmg1gj1l42av16ndyzndix4y2jbgn59adhcgdyyb1cm3d62n"; depends=[]; }; Rbent = derive2 { name="Rbent"; version="0.1.0"; sha256="0xkb57dhhfd3342rv0xwbhbhn4zp5fbfch84fbh0sickm09l9vrj"; depends=[Rfit]; }; Rbgs = derive2 { name="Rbgs"; version="0.2"; sha256="1q0dnbcpgx7x9klr6z33z6g2p9p8mrmhnsqjy6qw15ch720rrgn3"; depends=[imager magrittr rJava]; }; Rbitcoin = derive2 { name="Rbitcoin"; version="0.9.2"; sha256="0ndq4kg1jq6h0jxwhpdp8sw1n5shg53lwa1x0bi7rifmy0gnh66f"; depends=[data_table digest RCurl RJSONIO]; }; @@ -4343,7 +4358,6 @@ in with self; { RcmdrPlugin_EcoVirtual = derive2 { name="RcmdrPlugin.EcoVirtual"; version="1.0"; sha256="0q879wnrmgbaddv883q9zdnp0i7kjcgn8cffv7lp8nrsqil6l7mc"; depends=[EcoVirtual Rcmdr]; }; RcmdrPlugin_Export = derive2 { name="RcmdrPlugin.Export"; version="0.3-1"; sha256="17fn3si6b6h20c52k1k6fv9mslw3f9v0x1kxixzcvq54scdx0sk0"; depends=[Hmisc Rcmdr xtable]; }; RcmdrPlugin_FactoMineR = derive2 { name="RcmdrPlugin.FactoMineR"; version="1.7"; sha256="1145rpzhq219sl0j2bg5xa0ihq13lmr7ahcn3db4a8mqlz2fp8zy"; depends=[FactoMineR Rcmdr]; }; - RcmdrPlugin_FuzzyClust = derive2 { name="RcmdrPlugin.FuzzyClust"; version="1.1"; sha256="1lg6k3h4n45s6wjkl3ycwfngfr2i6mkhirifhbazsvv297bg0iba"; depends=[clue doParallel foreach ggplot2 iterators MASS Rcmdr reshape2 tcltk2 tkrplot]; }; RcmdrPlugin_GWRM = derive2 { name="RcmdrPlugin.GWRM"; version="1.0.2"; sha256="01q4k9s815pgd5cavm6nyxy5npmpxryari9v6wys4n5cjpn5g6xq"; depends=[GWRM Rcmdr RcmdrMisc]; }; RcmdrPlugin_HH = derive2 { name="RcmdrPlugin.HH"; version="1.1-47"; sha256="1bba11izs1jhjsyb0d45c34gcihapk231qbiabcxf8x93sdmg6ga"; depends=[HH lattice mgcv Rcmdr]; }; RcmdrPlugin_IPSUR = derive2 { name="RcmdrPlugin.IPSUR"; version="0.2-1.1"; sha256="0dbdsxdxhxm79cq7hi0rh8qphan73521lmivcnb4ca8g6ha2y32v"; depends=[Rcmdr]; }; @@ -4388,7 +4402,7 @@ in with self; { RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.10"; sha256="0jj4w8141xl3yvr4ss8c48kiib5d0rsj7f6csn3hq9viqy71hy1s"; depends=[Rcpp]; }; RcppCGAL = derive2 { name="RcppCGAL"; version="5.3.1.1"; sha256="0pxfvcpizvqlixz8547m7wf7haza5ca9bslvg8wwwmnpwrifz4fy"; depends=[Rcpp]; }; RcppCNPy = derive2 { name="RcppCNPy"; version="0.2.10"; sha256="175bn75akwgz3vcp0n59kiqqz7q9cwkvih241nj8v810cp4gpmkp"; depends=[Rcpp]; }; - RcppCWB = derive2 { name="RcppCWB"; version="0.5.0"; sha256="0zywvljyg9vfdg6qkwc7xl2b5wc5m3jw1dfg4r6wvl8lgq06ihcr"; depends=[Rcpp]; }; + RcppCWB = derive2 { name="RcppCWB"; version="0.5.1"; sha256="0ly5snza8jryrmnlk3bi8br5mcc4nhnk35r6y2drschzbi60fybk"; depends=[fs Rcpp]; }; RcppCensSpatial = derive2 { name="RcppCensSpatial"; version="0.1.0"; sha256="0ckyl88b81l58dkk0s40mcanjqaibi106q6jsrak79as93g1dbh1"; depends=[ggplot2 gridExtra MomTrunc mvtnorm Rcpp RcppArmadillo RcppProgress Rdpack roptim tlrmvnmvt]; }; RcppClassic = derive2 { name="RcppClassic"; version="0.9.12"; sha256="0v9v34i1c4dkplavdl14kz1k2rnk4hsaiyv6rkc9403z9isvzzr0"; depends=[Rcpp]; }; RcppClassicExamples = derive2 { name="RcppClassicExamples"; version="0.1.2"; sha256="0dr2104miy7psr73nicfs84652ai0d5liw6wxcwyrx7fmys3p638"; depends=[Rcpp RcppClassic]; }; @@ -4400,7 +4414,7 @@ in with self; { RcppDynProg = derive2 { name="RcppDynProg"; version="0.2.0"; sha256="10nc0sx3n83kg8rddbajifr9q8iyjmm59z5xcpqfmmfi345i26al"; depends=[Rcpp RcppArmadillo wrapr]; }; RcppEigen = derive2 { name="RcppEigen"; version="0.3.3.9.1"; sha256="0qp9gypar280lm84pc8w0fxw4jgwqygwi3qnl5sl52kpkcj8c14a"; depends=[Matrix Rcpp]; }; RcppEigenAD = derive2 { name="RcppEigenAD"; version="1.0.0"; sha256="18zm9hsfqwiicxsdm87ix3qc261ljxxn2s736p6aayx82b6vwkz6"; depends=[BH functional memoise Rcpp RcppEigen Rdpack readr]; }; - RcppEnsmallen = derive2 { name="RcppEnsmallen"; version="0.2.18.1.1"; sha256="1xbxyxsx2vczf003b9kj3xyph3bkawp3h4lvxblxmklxpd1s8lfb"; depends=[Rcpp RcppArmadillo]; }; + RcppEnsmallen = derive2 { name="RcppEnsmallen"; version="0.2.18.2.1"; sha256="10y86c809ijzvli3vbkm7i6si3ik83ppsr6pivqznx9wslzvk79i"; depends=[Rcpp RcppArmadillo]; }; RcppExamples = derive2 { name="RcppExamples"; version="0.1.9"; sha256="0568zipgjxgmx086mlfpp5n7v8kf50gwrylvhl1bgvzb2vvr9dhj"; depends=[Rcpp]; }; RcppFaddeeva = derive2 { name="RcppFaddeeva"; version="0.1.0"; sha256="1rah18sdfmbcxy83i7vc9scrwyr34kn9xljkv9pa31js68gn2jrl"; depends=[knitr Rcpp]; }; RcppFarmHash = derive2 { name="RcppFarmHash"; version="0.0.2"; sha256="0nkismq7hmp1ahwv4z438zrcj7mqsfmas2yd6av6k2cmkgklqkbk"; depends=[Rcpp]; }; @@ -4419,16 +4433,16 @@ in with self; { RcppParallel = derive2 { name="RcppParallel"; version="5.1.5"; sha256="1sn211ajlb1p12sglxqns175rg078yvww268m8cp0vvd7cmk55k3"; depends=[]; }; RcppProgress = derive2 { name="RcppProgress"; version="0.4.2"; sha256="0j2b37gwjpgmrnr00srdzm751hzlpsjb54ph63xxmcdfnwhlnqmi"; depends=[]; }; RcppQuantuccia = derive2 { name="RcppQuantuccia"; version="0.1.0"; sha256="0nclclhrhvdma8s07jly0xrmaf8iqigln137wmjnsmj6hg7r8ph9"; depends=[BH Rcpp]; }; - RcppRedis = derive2 { name="RcppRedis"; version="0.1.11"; sha256="0aill5ng6ifcafsij1nsqcchca8sxdd87645c45sx7dznpsgrhvj"; depends=[BH RApiSerialize Rcpp]; }; + RcppRedis = derive2 { name="RcppRedis"; version="0.2.0"; sha256="070q8kp5lkz22g4w8fkh5cg3lcc2zwvkpkqz1smi6xcjv7m37bnh"; depends=[RApiSerialize Rcpp]; }; RcppRoll = derive2 { name="RcppRoll"; version="0.3.0"; sha256="0srzfhzkk42kzrdjnhbb37946jp1p688rgysy6k3i2is8jb21zyb"; depends=[Rcpp]; }; RcppSMC = derive2 { name="RcppSMC"; version="0.2.6"; sha256="1svpzx4h9baipqnx2793vkjh1lnr92y82whpryqzzm4i7b6zx27i"; depends=[Rcpp RcppArmadillo]; }; - RcppSimdJson = derive2 { name="RcppSimdJson"; version="0.1.6"; sha256="06d2w7a57sidw06ymk3kb0bc1xp0fzzz39m7niwpz0f10203ky0z"; depends=[Rcpp]; }; + RcppSimdJson = derive2 { name="RcppSimdJson"; version="0.1.7"; sha256="0ajbm7qy3fqlaadpzfhzsaczszlw6l5p31mmr1xd2cb31wszpg9r"; depends=[Rcpp]; }; RcppSpdlog = derive2 { name="RcppSpdlog"; version="0.0.7"; sha256="13cn8dm68mhpgimgvk2ybsccs3qjg8c975zdjr8h86vfwyjj4gnv"; depends=[Rcpp]; }; RcppStreams = derive2 { name="RcppStreams"; version="0.1.3"; sha256="06il7q3afaws57m0fxf04f2p5dvs23l1f7gl78pxwzclacdy3839"; depends=[BH Rcpp]; }; RcppTN = derive2 { name="RcppTN"; version="0.2-2"; sha256="0m2wc5n1fzxv56s4gqqnygb24dbadgrpgjm4bs4hr6qazgjapymf"; depends=[Rcpp]; }; RcppTOML = derive2 { name="RcppTOML"; version="0.1.7"; sha256="0h8517ipwqhqkhcfiyqmvsb585g01p0ra0azbpzyxip6pq6g029g"; depends=[Rcpp]; }; - RcppThread = derive2 { name="RcppThread"; version="2.0.2"; sha256="1hkv4074b1lm60rgryhl6167axbc54ci2qxlsan079ak6vzlx31b"; depends=[]; }; - RcppUUID = derive2 { name="RcppUUID"; version="1.0.0"; sha256="0sx25z71bkjsf3ggljqkv1pji5kc32i3lkq28igiwixxfl2kj89b"; depends=[BH Rcpp]; }; + RcppThread = derive2 { name="RcppThread"; version="2.1.1"; sha256="14i3bphg4gkw1hsd5d2w3sjys6da8ac7lbd470v4m98v4d3d0hcd"; depends=[]; }; + RcppUUID = derive2 { name="RcppUUID"; version="1.1.1"; sha256="0sxdj5ay90i1bs3wizij31n21ym8l0q0c79959arp1gd303sd8b8"; depends=[BH Rcpp]; }; RcppXPtrUtils = derive2 { name="RcppXPtrUtils"; version="0.1.1"; sha256="0jh64c46gp99d2nsih14vx34pamc8i7gkmiy2nj94rx3sxq62yh5"; depends=[Rcpp]; }; RcppXsimd = derive2 { name="RcppXsimd"; version="7.1.6"; sha256="1iwiz4964dw015cbxcanks8xkjan39hfzf8x6bhvf6dqqwkc4bh7"; depends=[Rcpp]; }; RcppXts = derive2 { name="RcppXts"; version="0.0.4"; sha256="143rhz97qh8sbr6p2fqzxz4cgigwprbqrizxpkjxyhq8347g8p4i"; depends=[Rcpp xts]; }; @@ -4439,13 +4453,13 @@ in with self; { Rcssplot = derive2 { name="Rcssplot"; version="1.0.0"; sha256="0hnzwjwk9zh4zbzy8sa0z6amikvpd9k1p1abd38khr8q8k1k8jiv"; depends=[]; }; Rcurvep = derive2 { name="Rcurvep"; version="1.2.0"; sha256="1j067b98hcwm2ha0yrzbwjm54f4z5yqi04y9jkh9k2avpcpdbqxx"; depends=[boot dplyr ggplot2 magrittr purrr Rdpack rlang stringr tibble tidyr tidyselect]; }; Rd2md = derive2 { name="Rd2md"; version="0.0.5"; sha256="1kqni87jg3avpcir1ls2kkf6qafkkdkcv51d9azsbqmji5168vlf"; depends=[knitr]; }; - Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.12"; sha256="0ajbi1v2hgfal5phrgdp172qkl0n1x67pqi0srbclk1ymjnlnrjh"; depends=[formatR roxygen2 xfun]; }; + Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.13"; sha256="1dbysss9m1av5405w7cvkfzkzb3pyl9xlikk6az7qzfdr56zm4b3"; depends=[formatR roxygen2 xfun]; }; Rdca = derive2 { name="Rdca"; version="0.1.0"; sha256="06s4n5xpla937q9f55xmsickvdiwiapxmwqvn6k0zsacisscaagl"; depends=[dplyr magrittr minpack_lm Rcpp RcppArmadillo Rdpack]; }; Rdiagnosislist = derive2 { name="Rdiagnosislist"; version="1.0"; sha256="0f7dikc23z7gyhi29dg2l4l1q178d16nad98xvmdbygah8k1b377"; depends=[bit64 data_table]; }; Rdice = derive2 { name="Rdice"; version="1.0.0"; sha256="1xibvm690808p2g3jch7rh1825yrpgln2hjfclgxjwn822qvs4xr"; depends=[data_table]; }; Rdimtools = derive2 { name="Rdimtools"; version="1.0.9"; sha256="1fb5daizc615g58yai6p4lqczwi8kq6fyyifnyn8izxjdpqh0ivm"; depends=[CVXR maotai MASS mclustcomp RANN Rcpp RcppArmadillo RcppDE RcppDist Rcsdp Rdpack RSpectra]; }; Rdistance = derive2 { name="Rdistance"; version="2.1.3"; sha256="03wh6y9h5jgfc6xdncpgyz0v7lqavikp3pf5wwfmm2rqfj7yjr8c"; depends=[]; }; - Rdpack = derive2 { name="Rdpack"; version="2.1.3"; sha256="1f2m9pxm4s4gkrqh58jznkqj2fcw6f29c1l05k5mmkwsdf3ai0c3"; depends=[rbibutils]; }; + Rdpack = derive2 { name="Rdpack"; version="2.1.4"; sha256="0r242a352wa7kha0n62ng6ri0qi14hwjknnyjvfcd7mx4qvfwhgv"; depends=[rbibutils]; }; Rdroolsjars = derive2 { name="Rdroolsjars"; version="1.0.1"; sha256="1l9bc1bwpj10irr973hzkhr04i1f3g998n8hcl2k2i9kgv1naqmz"; depends=[rJava]; }; Rdrw = derive2 { name="Rdrw"; version="1.0.2"; sha256="1487r8z6h1y0v6fxkp7qfbh7j96hw8gqbb0fc90m4cxwz0hrqrn2"; depends=[mvtnorm]; }; Rdsdp = derive2 { name="Rdsdp"; version="1.0.5.1"; sha256="0x5dcgl25i6j2pg6d69rinal0yi8w0jwlfg05bnk9bg9v7i7db67"; depends=[]; }; @@ -4467,7 +4481,7 @@ in with self; { RecordLinkage = derive2 { name="RecordLinkage"; version="0.4-12.3"; sha256="11nlmg1hcf4nv69ampc4mdq2lz27mq9yn4q7c0k45g0ilydb0pg3"; depends=[ada data_table DBI e1071 evd ff ipred nnet rpart RSQLite xtable]; }; RecordTest = derive2 { name="RecordTest"; version="2.1.0"; sha256="0a5hbhqx97kllwf5k6lrhcqixhqqj8ndklcvpmsp9jdf011b1100"; depends=[ggplot2]; }; Records = derive2 { name="Records"; version="1.0"; sha256="08y1g2m6bdrvv4rpkhd5v2lh7vprxy9bcx9ahp1f7p062bn2lwji"; depends=[]; }; - RedditExtractoR = derive2 { name="RedditExtractoR"; version="3.0.5"; sha256="09f815av0sn9cz5n3l02k1rrl91d4f67xkwqpdpadw7hnv516pwf"; depends=[RJSONIO rlang]; }; + RedditExtractoR = derive2 { name="RedditExtractoR"; version="3.0.6"; sha256="18apw0qjzk4lc02bx8kfi7hqxyb23zz2r7zw93dgf04aa8q49x2i"; depends=[RJSONIO rlang]; }; RedisBaseContainer = derive2 { name="RedisBaseContainer"; version="1.0.1"; sha256="0pnjj3rbp2as7h92907g338bd173ygl1zfnlfw6c9wpzfvw909rr"; depends=[DockerParallel]; }; Rediscover = derive2 { name="Rediscover"; version="0.3.0"; sha256="0396shg9gf0r7q5jlrab5mr003fz7kj8xdq5chnzmild6kwyq3sk"; depends=[data_table maftools Matrix matrixStats PoissonBinomial RColorBrewer ShiftConvolvePoibin speedglm]; }; Redmonder = derive2 { name="Redmonder"; version="0.2.0"; sha256="02qrz1b0g7hdacj2s2bks5gfwnypkbiwlmn0bv7im1zz1swg9cp8"; depends=[]; }; @@ -4481,7 +4495,6 @@ in with self; { RelValAnalysis = derive2 { name="RelValAnalysis"; version="1.0"; sha256="1jl1gfj44gfkmc1yp6g5wwn4miydwpvxwrg76rnkv9454zrc5pvp"; depends=[zoo]; }; Relatedness = derive2 { name="Relatedness"; version="2.0"; sha256="1aidklwk8q2wdfsmhlbd3vzq9kzsyh4wn1g28biyb6lq7iwq1hl4"; depends=[]; }; Relectoral = derive2 { name="Relectoral"; version="0.1.0"; sha256="0kpdafdvpcs6iicpc10i634nlk7dqk2nymdnnlkpp5frdxlbycvx"; depends=[dplyr ggforce ggplot2 readxl rmarkdown sf xlsx]; }; - Reliability = derive2 { name="Reliability"; version="0.0-2"; sha256="12zsicgbjqih3grbs62pw37x8wlkmnyc7g0yz6bqnfb4ym2yb7fg"; depends=[]; }; RelimpPCR = derive2 { name="RelimpPCR"; version="0.2.4"; sha256="0svfyh313wawzqx9hfb4cg0wn2ir6nd769z1k3dckdsb8d7xkh3q"; depends=[caret ggplot2 relaimpo reshape2 Rmisc]; }; Renext = derive2 { name="Renext"; version="3.1-0"; sha256="074djs4y71667aylpgh514pzijr90rgpzm4w5ayq9cgaqz22m3am"; depends=[evd numDeriv]; }; RenvModule = derive2 { name="RenvModule"; version="1.1"; sha256="1wmz6k0f9lpa8d7qxqm308l7h11k0cj07q3qisfjic5sp308c3d2"; depends=[]; }; @@ -4509,12 +4522,12 @@ in with self; { Rexperigen = derive2 { name="Rexperigen"; version="0.2.1"; sha256="158ksnd1gvzq7ii0ys2v0wrfnr001hni0i8m77p1fn1arixgmqdw"; depends=[digest jsonlite RCurl]; }; RfEmpImp = derive2 { name="RfEmpImp"; version="2.1.5"; sha256="1bvjk71rfhpbj2j7raibsb0y3skbv1qba7yl2g00npnkk2zk14xj"; depends=[mice ranger]; }; Rfacebook = derive2 { name="Rfacebook"; version="0.6.15"; sha256="0hp2mbm0hnyasizszvh5x9hv7z2q633zck1a1gvk36nbxb1shx7c"; depends=[httpuv httr rjson]; }; - Rfast = derive2 { name="Rfast"; version="2.0.4"; sha256="1n9imwkkq14ickp0g34jyha4jkr180xj0ar8xh3hqqi4dvihg6cm"; depends=[Rcpp RcppArmadillo RcppZiggurat]; }; + Rfast = derive2 { name="Rfast"; version="2.0.6"; sha256="0zxykq021h57mq0n6giqbx8ncjsdly0arhmaj3fcp3yfcxf4ns9l"; depends=[Rcpp RcppArmadillo RcppZiggurat]; }; Rfast2 = derive2 { name="Rfast2"; version="0.1.1"; sha256="1sqd5614gw1ag7wjidjv8bxf3qz8lkz7m9gangihgrlf0bm4944h"; depends=[RANN Rcpp RcppArmadillo Rfast]; }; Rfit = derive2 { name="Rfit"; version="0.24.2"; sha256="1b3pza2xdpifvrcqbdp5r2wy82ws1844bnpna01hqj65xbw2iix8"; depends=[]; }; Rfmtool = derive2 { name="Rfmtool"; version="4.1.4"; sha256="0vli7n957vrxs47nq5h4aqd9nwq7alj47q91zqc009rfx7wgx2k5"; depends=[]; }; Rfolding = derive2 { name="Rfolding"; version="1.0"; sha256="15lf73zxr1slin9faj9k0z8qkb1g9nb7h080nfv99gsi2ks68ssg"; depends=[]; }; - Rforestry = derive2 { name="Rforestry"; version="0.9.0.72"; sha256="02azafn8rbni4jxjvnrr7gyg2s0j6zl9059xdwvdwh3dj3m2cx2z"; depends=[dplyr glmnet onehot Rcpp RcppArmadillo RcppThread visNetwork]; }; + Rforestry = derive2 { name="Rforestry"; version="0.9.0.95"; sha256="0m6znm0yir0vlbp4vc517pxvbb81xg85cpgc9b12k5ay65lrzxq5"; depends=[dplyr glmnet onehot Rcpp RcppArmadillo RcppThread visNetwork]; }; Rfractran = derive2 { name="Rfractran"; version="1.0"; sha256="0cwc069f7rhkxkr5kn0n43mdy8m47gh0q6d5ijwzkhncrijb10cy"; depends=[gmp]; }; Rfssa = derive2 { name="Rfssa"; version="2.0.1"; sha256="07aj8gmr6sjrmx82g2g6xn40c3kb8i9bknsd0db0av6kfd8x6giy"; depends=[dplyr fda ggplot2 hrbrthemes httr lattice markdown plotly Rcpp RcppArmadillo RcppEigen RSpectra Rssa shiny tibble]; }; Rga4gh = derive2 { name="Rga4gh"; version="0.1.1"; sha256="0h5y722blkkwn6ask6vjnhl22v9l6511chdm50ig6xcs5dvjam2m"; depends=[httr jsonlite]; }; @@ -4523,11 +4536,10 @@ in with self; { Rglpk = derive2 { name="Rglpk"; version="0.6-4"; sha256="19mzpyimzq9zqnbi05j79b2di3nzaln8swggs9p8sqdr60qvr3d2"; depends=[slam]; }; RgoogleMaps = derive2 { name="RgoogleMaps"; version="1.4.5.3"; sha256="02v8k0bw70q4qwx4lcdy8p25q7n3ql2ll46lfpqllxa1p26svmfi"; depends=[png sp]; }; RhpcBLASctl = derive2 { name="RhpcBLASctl"; version="0.21-247.1"; sha256="0scpr6jq25xx7wmqyc380ann4h536ll0g7wblikk25yqvpamzrav"; depends=[]; }; - RichR = derive2 { name="RichR"; version="1.0.0"; sha256="0z0ri90jqdmw0vwxd1b4wr9if5cgm1gqpf6g9p1fdvncf4sdi9by"; depends=[magrittr metap plyr reshape2]; }; RidgeFusion = derive2 { name="RidgeFusion"; version="1.0-3"; sha256="10llmrsfpcqrkcbw7zj44kvfy7ywn9rk49n7zplilz8h94zzcmjv"; depends=[mvtnorm]; }; Ridit = derive2 { name="Ridit"; version="1.1"; sha256="02cni6hzf1bsns7vi8vklnhc0pfb5vwqhjnnfnjnnaxpzpsbvdfn"; depends=[]; }; RiemBase = derive2 { name="RiemBase"; version="0.2.5"; sha256="1ikv7n8hp23a5dbmnfypdkx74vxwjd9br0hvysnhhpg1ffvr5vhi"; depends=[pracma Rcpp RcppArmadillo Rdpack]; }; - Riemann = derive2 { name="Riemann"; version="0.1.3"; sha256="1yy4vc70raa57iz5chp367qwd8dgy3cdl7kzlkq1jchwry6l27xc"; depends=[CVXR DEoptim ggrepel lpSolve maotai Matrix Rcpp RcppArmadillo Rdimtools Rdpack RiemBase T4cluster]; }; + Riemann = derive2 { name="Riemann"; version="0.1.4"; sha256="1a3mlfgnzdvl5x1nqnmm4v3xb2nkdq87c21m6xyxbm7zh5vx5b6m"; depends=[CVXR DEoptim lpSolve maotai Matrix Rcpp RcppArmadillo Rdimtools Rdpack RiemBase T4cluster]; }; Riex = derive2 { name="Riex"; version="1.0.2"; sha256="03627dik6dd9d2kwv757zanh0i4invmcwg162m9ayhv41ygj5z1l"; depends=[dplyr ggplot2 httr purrr quantmod rjson stringr tibble tidyr TTR urltools xts zoo]; }; Rilostat = derive2 { name="Rilostat"; version="1.1.8"; sha256="02fmz4jla151w6bz0zg766q4d34kz1jf43156yr2f90zj8x4jjx4"; depends=[data_table dplyr DT haven plyr RCurl readr stringr tibble tidyr xml2]; }; Rip46 = derive2 { name="Rip46"; version="1.0.2"; sha256="0wfp6fm5mgmjqjkn0c5hvjd95yn4zcv0s8xc5294qf5jqxp8b1w7"; depends=[Rcpp]; }; @@ -4541,7 +4553,7 @@ in with self; { Rivivc = derive2 { name="Rivivc"; version="0.9"; sha256="0gl3040pp9nqm4g2ympnx80z64zfnn1hfsxka8ynd2cqhjn3b5i1"; depends=[signal]; }; RkMetrics = derive2 { name="RkMetrics"; version="1.3"; sha256="1k6vnr1r4h69iznib638z45gd0f8wc4g4h0ji9f0017883g77li1"; depends=[]; }; Rlab = derive2 { name="Rlab"; version="2.15.1"; sha256="1pb0pj84i1s4ckdmcglqxa8brhjha4y4rfm9x0na15n7d9lzi9ag"; depends=[]; }; - Rlabkey = derive2 { name="Rlabkey"; version="2.8.2"; sha256="1ja7ac41nb0x82ajr1k7av1fvx1blpsnbdm5771li6jwnmasf8hh"; depends=[httr jsonlite Rcpp]; }; + Rlabkey = derive2 { name="Rlabkey"; version="2.8.3"; sha256="0p6b0vm7kp7fq9cghj92j98zkiwy22dnpbaqcsms25dd08ra49x7"; depends=[httr jsonlite Rcpp]; }; Rlda = derive2 { name="Rlda"; version="0.2.6"; sha256="0i8n01h9072q339p1kiqhcpwphw0d2x6bsszbhgfqc2b160dk2bl"; depends=[coda doParallel foreach gtools Rcpp RcppArmadillo RcppProgress]; }; Rlgt = derive2 { name="Rlgt"; version="0.1-3"; sha256="0g610v5rch5s31gc7dy9zx4mcgsdhn82y1pmr2rs14qma0v7x515"; depends=[BH forecast Rcpp RcppEigen rstan rstantools sn StanHeaders]; }; Rlibeemd = derive2 { name="Rlibeemd"; version="1.4.2"; sha256="0hzsnrz30429pavf7qghknykah9ks4msb96zwa1xgvqb4zd512dg"; depends=[Rcpp]; }; @@ -4587,7 +4599,7 @@ in with self; { RobustLinearReg = derive2 { name="RobustLinearReg"; version="1.2.0"; sha256="06137f516gyj64qdmwby7m1xnvj4hxzpqj454jn0xcinvl89380w"; depends=[]; }; RobustRankAggreg = derive2 { name="RobustRankAggreg"; version="1.1"; sha256="1pslqyr1lji1zvcrwyax4zg2s81p1jnhfldz8mdfhsp5y7v8iar3"; depends=[]; }; RockFab = derive2 { name="RockFab"; version="1.2"; sha256="1b5mhfll5vmqwl4pblmclyx9604vn07jyza02rm0jcsx915ms8sc"; depends=[EBImage rgl]; }; - Rodam = derive2 { name="Rodam"; version="0.1.12"; sha256="01pjyz4sjdvmjicvajvhryv9b3kzwdyba0vwj0gvyrf6wiahv4qx"; depends=[httr]; }; + Rodam = derive2 { name="Rodam"; version="0.1.14"; sha256="1vnr57qq56svrlixmimh4x0irprsvanj2hz95yb7fhl26kgy0mmk"; depends=[httr]; }; Rogue = derive2 { name="Rogue"; version="2.1.0"; sha256="1dr7rknvkrwkd53ah92wkrn1k3jr3bkzkp5r90v9mq0vlq9hvvn2"; depends=[ape cli fastmatch matrixStats Rdpack Rfast TreeDist TreeTools]; }; RolWinMulCor = derive2 { name="RolWinMulCor"; version="1.2.0"; sha256="0vfsgp0qvv6pnpai8nyy0xzzlzyjwx98xrhlwlks9dbm84wg8vqr"; depends=[colorspace gtools pracma scales zoo]; }; RonFHIR = derive2 { name="RonFHIR"; version="0.4.0"; sha256="1ajpgpp300m0zzqzzwsn8sfy8x751hrr8py9n9xvzjmkgyrh4hhw"; depends=[httr jsonlite R6 stringr]; }; @@ -4614,9 +4626,9 @@ in with self; { Rquefts = derive2 { name="Rquefts"; version="1.2-1"; sha256="1v548wys8fd6xqz4hfvqkckl6szjf6zr383n1x0kc6f2pfrc6jnf"; depends=[meteor Rcpp]; }; Rramas = derive2 { name="Rramas"; version="0.1-6"; sha256="16aapvz9j81lvi5ryj41bvn3wf51b0gynnzs0jpvva4m3mvzw6an"; depends=[diagram]; }; Rraven = derive2 { name="Rraven"; version="1.0.13"; sha256="0nlqr1hzbzbz4rb3hjy01iw8czhaqvwmy9hh728fgl5vajwqwn8g"; depends=[NatureSounds pbapply seewave tuneR warbleR]; }; - Rrdap = derive2 { name="Rrdap"; version="1.0.1"; sha256="1mnk1s1nyrj9cz9j2gkw6p9wdj79jajb2hjzynanfw1zmgmnd45g"; depends=[curl rjson stringr]; }; + Rrdap = derive2 { name="Rrdap"; version="1.0.2"; sha256="1v4q5pgk4ycwi2m807iqz6j2bvsm4x4dvqg5vr5fa8ggfw40xvz7"; depends=[curl rjson stringr]; }; Rrdrand = derive2 { name="Rrdrand"; version="0.1-16"; sha256="0j9yyvq8r1cgwj3kw1ak6hyazr67f2q0c1m651wdm0wcvm1ajx7f"; depends=[]; }; - RsSimulx = derive2 { name="RsSimulx"; version="1.0.1"; sha256="0fg19mmgcqz39mxhnxlsd1l1qmkjrvbc3149hrib0mayy1b1fqw4"; depends=[ggplot2 gridExtra]; }; + RsSimulx = derive2 { name="RsSimulx"; version="2.0.0"; sha256="11ji1fvf6rclzh8yw1d7d4zkfzsyw4jsfwyhxlx9j0kqyr0jz5bc"; depends=[ggplot2 gridExtra]; }; Rsagacmd = derive2 { name="Rsagacmd"; version="0.1.2"; sha256="0zj9a63hq8pm592lvf3n62pzn0lfkh02d4v4mkqhgixx7jaxyz2x"; depends=[foreign generics processx raster rgdal rlang rvest sf stars stringr terra tibble]; }; Rsampling = derive2 { name="Rsampling"; version="0.1.1"; sha256="14rp3j7iaii4rc3jkbijmbgvlagxxqjkz3vvfwwpxix43rsi8zsk"; depends=[]; }; Rsconctdply = derive2 { name="Rsconctdply"; version="0.1.3"; sha256="12xc1laxgivv4szp8341pvhmxnzzzzc2s4jhnqsqrbx71lbd9szg"; depends=[dplyr rjson rsconnect]; }; @@ -4624,7 +4636,7 @@ in with self; { Rsfar = derive2 { name="Rsfar"; version="0.0.1"; sha256="1xskvvvavkdyjhb99qlii9qc0q1m36mxx6g0ybgwbq26lq4ypq7l"; depends=[fda]; }; Rsgf = derive2 { name="Rsgf"; version="1.0.0"; sha256="1d2bk20ixnfkzbimvsj56arf7brgkwlyrs80snfn5cnvmwic0h8i"; depends=[ggplot2 png stringi stringr]; }; RsimMosaic = derive2 { name="RsimMosaic"; version="1.0.3"; sha256="0jlzrs9xxlpazvq3iw8znk0bd00bzlry7bgxsxq7xl23akizj0ji"; depends=[fields jpeg RANN]; }; - Rsmlx = derive2 { name="Rsmlx"; version="3.0.0"; sha256="04d47l8s8hi8gyca4j60zj35wpvr4mml282w586c8x24g62jznvk"; depends=[ggplot2 gridExtra MASS]; }; + Rsmlx = derive2 { name="Rsmlx"; version="4.0.2"; sha256="05g89qpfbivw1j647vgsdqkqalzzcywkqy21vyiwi0j9va92482p"; depends=[dplyr ggplot2 gridExtra MASS]; }; Rsolnp = derive2 { name="Rsolnp"; version="1.16"; sha256="0w7nkj6igr0gi7r7jg950lsx7dj6aipgxi6vbjsf5f5yc9h7fhii"; depends=[truncnorm]; }; Rspc = derive2 { name="Rspc"; version="1.2.2"; sha256="1cnzqpnh009wfs51dc4id9q3giaa8b6dc75b1lhzpwcvw0cxcy4y"; depends=[]; }; Rspotify = derive2 { name="Rspotify"; version="0.1.2"; sha256="1q8ajjx5ghlgxgch9gifvhi2gmsi0ph8pygwrb9jrd3ijahlw5k4"; depends=[dplyr httr jsonlite magrittr plyr]; }; @@ -4652,7 +4664,6 @@ in with self; { Rwave = derive2 { name="Rwave"; version="2.6-0"; sha256="1si4iambn5kxagc24gy83hlvv5zgypz6dqxbzk24qxzfwglkhqzb"; depends=[]; }; RweaveExtra = derive2 { name="RweaveExtra"; version="1.0-0"; sha256="1jg4dn2x8d74z0wy9j9azvb8f1g0449ji5yl6g964lv2g3fpq6qh"; depends=[]; }; Rwhois = derive2 { name="Rwhois"; version="1.0.9"; sha256="0jf7byg5ah4djj4b3l0760x9bk9yh6b23aa3w0q1cqlx4j9drf2w"; depends=[stringr]; }; - Rwinsteps = derive2 { name="Rwinsteps"; version="1.0-1.1"; sha256="0kaxhaa65k1hkhl4kqfxyyk6v967xncrdr5hy8b808zlbqriankc"; depends=[]; }; Rwofost = derive2 { name="Rwofost"; version="0.8-3"; sha256="1x6ia49xrdqcxilq12g47gd00smm5jdrq7xavndd3dcnvl1nqk1y"; depends=[meteor Rcpp]; }; Rwordseg = derive2 { name="Rwordseg"; version="0.3-2"; sha256="10jhfalh45rrcm76hwz4b5yl408ndx2wkr0i3q1avx6z6i45d8s6"; depends=[HMM tmcn]; }; Rwtss = derive2 { name="Rwtss"; version="0.9.1"; sha256="0ihpn96l0bj34ph747q7rfq78sbjjb4hhdjr2a7agc97rrggcr94"; depends=[assertthat dplyr geosphere ggplot2 httr jsonlite lubridate magrittr purrr reshape2 stringr tibble zoo]; }; @@ -4662,11 +4673,11 @@ in with self; { Ryacas = derive2 { name="Ryacas"; version="1.1.3.1"; sha256="0c258p7ibas4xbq1wh8c1nfqf6r9d0hicrf8mkkyriw4mb6wmzqq"; depends=[magrittr Rcpp]; }; Ryacas0 = derive2 { name="Ryacas0"; version="0.4.3"; sha256="1qsj6hbydi923bvc8qy1k34nl73xf3fsmr5ww3dw9gzn1kzg2470"; depends=[Rcpp settings xml2]; }; S2sls = derive2 { name="S2sls"; version="0.1"; sha256="0qq1rff2cdgrm5rj69jxgrl71i0wmzyn424fdvcg02zdv9ggqhd3"; depends=[spanel]; }; - SACCR = derive2 { name="SACCR"; version="3.1"; sha256="1nngjaay4n856a1naw8niw30rhzrxxvnkma6wx721r4zv24nkw3k"; depends=[data_tree jsonlite Trading]; }; + SACCR = derive2 { name="SACCR"; version="3.2"; sha256="1sp8hjpwzyczj85saps6a6yw30yh5098ig2xmlf79jvzv86nqgn1"; depends=[data_tree jsonlite Trading]; }; SACOBRA = derive2 { name="SACOBRA"; version="1.2"; sha256="1v45l56vifkg3v2bfhk3kfg4fn0dfvrjcgy13zzymm8blr7vazi5"; depends=[mgcv R6 testit]; }; SADEG = derive2 { name="SADEG"; version="1.0.0"; sha256="02ilykbdanx1isbd80c43hqpzkckq6dg40y0rklcnck6v96qky3n"; depends=[]; }; SADISA = derive2 { name="SADISA"; version="1.2"; sha256="0yn7f360wl5ykys5zln159xh2h8bx7zb5ddwhv1migjlqry506hp"; depends=[DDD pracma]; }; - SAEval = derive2 { name="SAEval"; version="0.1.0"; sha256="1vakvgcr289b9c58x83mjj88ksshbh71gxcna0vfpiyl4rdc052b"; depends=[car ggplot2 ggspatial lmtest]; }; + SAEval = derive2 { name="SAEval"; version="0.1.1"; sha256="036k13q0746rcshpwzrf33mrwa8c3i4bdh14s53xngzzdfxckxlr"; depends=[car ggplot2 ggspatial lmtest]; }; SAFARI = derive2 { name="SAFARI"; version="0.1.0"; sha256="10fmav9dbq5kbgy8gjsp3561vi46bjvkh2wqjs39vx5z8x1ml7i3"; depends=[caTools EBImage lattice png]; }; SAFD = derive2 { name="SAFD"; version="2.1"; sha256="078ki9wrmcf80bwhx4d56gas79xrc17a0081i13yxvjqn6w7f7jd"; depends=[]; }; SAGMM = derive2 { name="SAGMM"; version="0.2.4"; sha256="18ig7ncmrfs5cyc28xpbqk9zjhwqfp7gwix7y2v1j4j2wbdc2hzs"; depends=[lowmemtkmeans mclust MixSim Rcpp RcppArmadillo]; }; @@ -4684,12 +4695,10 @@ in with self; { SAR = derive2 { name="SAR"; version="1.0.3"; sha256="1cnf0hsq82lzssvz5xs2abvnrjxda0g6mjx70a1j223zdwjqmw64"; depends=[AzureRMR AzureStor dplyr httr jsonlite Matrix R6 Rcpp RcppArmadillo RcppParallel]; }; SARP_compo = derive2 { name="SARP.compo"; version="0.1.5"; sha256="17pvgc7alv59lxnrz1rj5gdl2lg90jxfwkyn8j802n22r3bmzcsm"; depends=[car igraph]; }; SARP_moodle = derive2 { name="SARP.moodle"; version="0.8.7"; sha256="1yq1rvalibdja12461nivaifhdip3w0qzm0z99zcl0h13r6zl55r"; depends=[base64enc]; }; - SASPECT = derive2 { name="SASPECT"; version="0.1-1"; sha256="1d3yqxg76h9y485pl5mvlx6ls1076f80b320yvx4zxmqq9yxmaba"; depends=[]; }; SAScii = derive2 { name="SAScii"; version="1.0"; sha256="0nq859xmrvpbifk8q1kbx3svg61rqdg8p8gr1pn85fr0j3w7h666"; depends=[]; }; SASmarkdown = derive2 { name="SASmarkdown"; version="0.4.3"; sha256="0jc21ylflvv4snik13731acxh9zw79s7hpswk58p2wzvavq8k9zn"; depends=[knitr]; }; SASmixed = derive2 { name="SASmixed"; version="1.0-4"; sha256="0491x4a3fwiy26whclrc19alcdxccn40ghpsgwjkn9sxi8vj5wvm"; depends=[]; }; SASxport = derive2 { name="SASxport"; version="1.7.0"; sha256="1na94lxrn8kbhxpiflg14nkdx13rjq9bvvqbxyxh1mq0q7vz7a2l"; depends=[Hmisc stringi]; }; - SAVE = derive2 { name="SAVE"; version="1.0"; sha256="1m9rrga8x00hlvn0c1jcz6yz14pdm6h3dq14905mq49sw63c7zll"; depends=[coda DiceKriging]; }; SAVER = derive2 { name="SAVER"; version="1.1.2"; sha256="1s1kw8idkaj7j90fw4qn9k0wd4vz0sblsk06ry6lm4afcar0p158"; depends=[doParallel foreach glmnet iterators Matrix]; }; SAutomata = derive2 { name="SAutomata"; version="0.1.0"; sha256="0d9q7bm2f7s4aslml40n43vwcdkc8rnn9ygydccwi4b9a7y23k58"; depends=[]; }; SBAGM = derive2 { name="SBAGM"; version="0.1.0"; sha256="0vb1679016b0bhz2xlka9wgr2fxwa0447ymfncm1n5fks60rrnnf"; depends=[forecast MSGARCH rugarch]; }; @@ -4741,7 +4750,6 @@ in with self; { SDT = derive2 { name="SDT"; version="1.0.0"; sha256="1jwpfd1pnzy9wcl90qv5bgwi19shsw9064dvml9zwbif8yw8dzjj"; depends=[quadprog]; }; SDaA = derive2 { name="SDaA"; version="0.1-3"; sha256="0z10ba4s9r850fjhnrirj2jgnfj931vwzi3kw9502r5k7941lsx0"; depends=[]; }; SE_EQ = derive2 { name="SE.EQ"; version="1.0"; sha256="09fqx2rcqpiv072l6gqgfz9pdhas98q4kkkm7m4y28k13q2gicgl"; depends=[MASS]; }; - SEA = derive2 { name="SEA"; version="2.0"; sha256="1pw1509qjjqz63a8biwakdxqgln7kjviacqrjvp1323vf55bi4fs"; depends=[data_table doParallel foreach kolmim KScorrect MASS shiny]; }; SEAGLE = derive2 { name="SEAGLE"; version="1.0.1"; sha256="1j5wjjw7fl2m4h9brg8dyahf1vmn9wgc7jaajaz6z1xqm6fc0d9k"; depends=[CompQuadForm Matrix]; }; SEAsic = derive2 { name="SEAsic"; version="0.1"; sha256="1mg01sag6n1qldjvmvbasac86s7sbhi4k99kdkav2hdh6n9jg467"; depends=[]; }; SECFISH = derive2 { name="SECFISH"; version="0.1.7"; sha256="0yd9k6anz9g4psg5kh1bhp0lr1i4y7in1m0mxk4qp14nl1zqy4fy"; depends=[ggplot2 Hmisc optimization]; }; @@ -4751,7 +4759,6 @@ in with self; { SEL = derive2 { name="SEL"; version="1.0-2"; sha256="1nrk0fx6ff330abq8askvp0790xnfv00m3sraqcr32hciw6ks421"; depends=[lattice quadprog]; }; SELF = derive2 { name="SELF"; version="0.1.1"; sha256="1yafjhxwsanr33dqy7w9x61ghldr29s8k6h68idq6nnfb77ghjyx"; depends=[bnlearn CompareCausalNetworks data_table Rcpp xgboost]; }; SEMID = derive2 { name="SEMID"; version="0.4.0"; sha256="1888l4m7d944j4cmh6l19fjmrsh6r6xlfwjzpvyanxd769xmyfzc"; depends=[igraph R_methodsS3 R_oo R_utils]; }; - SEMModComp = derive2 { name="SEMModComp"; version="1.0"; sha256="1za67470f13z8jsy3z588c7iiiz993d3vjqrb8v9fann2r6sf1md"; depends=[mvtnorm]; }; SEMgraph = derive2 { name="SEMgraph"; version="1.0.5"; sha256="1yr77c46y009h7ra842flvlmi7q1n9bk6ji9wlwkyl62caqn5ksi"; depends=[boot cate corpcor dagitty diffusr flip gdata ggm GGMncv glmnet graph igraph lavaan Matrix pbapply protoclust RcppEigen Rgraphviz]; }; SEMrushR = derive2 { name="SEMrushR"; version="0.1.0"; sha256="19prwbh429ra69nz3nx4vzqmb46xssci74rk9mhpnzbi52ycg5gd"; depends=[]; }; SEMsens = derive2 { name="SEMsens"; version="1.0.2"; sha256="18qcwhn1j9ci6338spwgym9g8590p5nc5sdvnpby3xrs9wv76nqs"; depends=[lavaan]; }; @@ -4776,18 +4783,16 @@ in with self; { SIDES = derive2 { name="SIDES"; version="1.16"; sha256="0hp0dkdmc5srqjbpvcq2ynwzrfdx06xn4s4a7a3wlssmn4indj69"; depends=[doParallel foreach MASS memoise multicool nnet survival]; }; SIGN = derive2 { name="SIGN"; version="0.1.0"; sha256="1ak4zv5a50iknrxpfw1iffn8gv8mc0rz2gk96nzky9zx6li5drhk"; depends=[GSVA survcomp survival]; }; SIHR = derive2 { name="SIHR"; version="0.2.0"; sha256="1km82hrwsdz0chkpsad7bylnkcc7pwc7j0s9ng2hd0w5m85cigc4"; depends=[CVXR glmnet Matrix qpdf Rdpack scalreg]; }; - SII = derive2 { name="SII"; version="1.0.3.1"; sha256="1xvk04b7725ksfd7h4p7px5zanbf6s7xlmjpb7w0nvbi6km2f7ri"; depends=[]; }; SILGGM = derive2 { name="SILGGM"; version="1.0.0"; sha256="1lhmisgg2zbfksl7czz0fqag3732gkjc44n615ipxbdi2pvnc7m0"; depends=[glasso MASS Rcpp reshape]; }; SILM = derive2 { name="SILM"; version="1.0.0"; sha256="1iaivpdx18djfm5dqak0q9kfl1xfrnx3gk5x9a4y53h1d7jhl9p6"; depends=[glmnet hdi scalreg SIS]; }; SIMEXBoost = derive2 { name="SIMEXBoost"; version="0.1.0"; sha256="0gxw8xb2hvsizawfd863c268q5wq1cdsmdsand5iys2b9gry1pmq"; depends=[MASS]; }; - SIMMS = derive2 { name="SIMMS"; version="1.3.1"; sha256="0kgaky1hpvvbs2hbzaili9h9pv34c5drfh0d1rc8vf9099xw8575"; depends=[doParallel foreach glmnet MASS randomForestSRC survival]; }; - SIMPLE_REGRESSION = derive2 { name="SIMPLE.REGRESSION"; version="0.1.3"; sha256="1qs9avqsa3k6gw757k8jq9aq3dwhiq74jbblvdd3g46srma5z9ry"; depends=[nlme]; }; + SIMPLE_REGRESSION = derive2 { name="SIMPLE.REGRESSION"; version="0.1.4"; sha256="0psmkkfm3i4wffnplm3mclpvkd28lb6kfj8idspmcpvp7414xl3m"; depends=[nlme]; }; SIN = derive2 { name="SIN"; version="0.6"; sha256="0vq80m3vl8spdnlkwvwy0gk3ziyybqzjp3scnfdcpn942ds7sgg9"; depends=[]; }; SIPDIBGE = derive2 { name="SIPDIBGE"; version="0.1.6"; sha256="1g8sz5jcndx33456cxciq85lq1jf8sbny649rzq1figbwvcz83ih"; depends=[cli COVIDIBGE PNADcIBGE png PNSIBGE POFIBGE purrr rstudioapi tibble]; }; SIRE = derive2 { name="SIRE"; version="1.1.0"; sha256="0f624j087k7krg73bqn2qxdgzq66jyhvzz8n024vz3h4hwagxs5n"; depends=[dplyr igraph magrittr MASS Matrix matrixcalc numDeriv psych Rsolnp stringr systemfit]; }; SIRmcmc = derive2 { name="SIRmcmc"; version="1.1"; sha256="1dqcp0mrddw0zl3zx0z077vd1x0p3q1j5cv8hxln9blmiv1lggx1"; depends=[Rcpp]; }; SIS = derive2 { name="SIS"; version="0.8-8"; sha256="1f5czwcgpmmn8habm24p3xh4w7jn2faais2x2gmaiq4dpjfnv6h8"; depends=[glmnet ncvreg survival]; }; - SISIR = derive2 { name="SISIR"; version="0.1-2"; sha256="1bhvgkcnv27av2z5pifs76j4dwpkhzwg7c3jxpc8pwac1s9jiz53"; depends=[doParallel expm foreach glmnet Matrix RSpectra]; }; + SISIR = derive2 { name="SISIR"; version="0.1-3"; sha256="093a202byak1839d6949yv4f0i43jlcvfmzd41qy4l0i7qdhvr72"; depends=[doParallel expm foreach glmnet Matrix RSpectra]; }; SITH = derive2 { name="SITH"; version="1.1.0"; sha256="1626nsbnz4fh49wymxm1cqb0nrfyxhmh9fmdxr62dzj5b53amknc"; depends=[Rcpp scatterplot3d]; }; SIfEK = derive2 { name="SIfEK"; version="0.1.0"; sha256="037ps6yfy7w6i8vm0b78c8w9kdmw312dl5nc2qz86rfk8kjg7w27"; depends=[MASS numDeriv ramcmc smfsb]; }; SK = derive2 { name="SK"; version="1.1"; sha256="19yg7yc2k4zz29bh42lw2jpjvkdj33f26xkfs8vz8lpp98yjf2vx"; depends=[FitAR GD MASS RColorBrewer rgeos rtop sp]; }; @@ -4807,7 +4812,6 @@ in with self; { SMARTAR = derive2 { name="SMARTAR"; version="1.1.0"; sha256="0ymhka4pjlqlnpv47abmc76ggijfw83i3jp9mrspnzcnb4d378xm"; depends=[MASS]; }; SMARTbayesR = derive2 { name="SMARTbayesR"; version="2.0.0"; sha256="15s6vzxgbskjvgd91q0vb9qxmmsj391bjbw7s51j879cfqd16xg2"; depends=[LaplacesDemon]; }; SMARTp = derive2 { name="SMARTp"; version="0.1.1"; sha256="0gkhl9j4l67brfmln28m4q4hfi271jlg5aijnjwahlj8nsi6384y"; depends=[covr mvtnorm sn]; }; - SMC = derive2 { name="SMC"; version="1.1"; sha256="1r4ajgi785lmpnlxrba0n6phmk1f0mb6b5yqk6hx8gng2w8ggclz"; depends=[]; }; SMCRM = derive2 { name="SMCRM"; version="0.0-3"; sha256="1x06w00sdijhg5h1s61q4ym5wgk97pw9md6api7if2cxjv7h5zcy"; depends=[]; }; SMDIC = derive2 { name="SMDIC"; version="0.1.3"; sha256="050lbrgbvyj5pzjswb85dn94fzzhcq1pb212qap64f20l0nzlway"; depends=[backports e1071 GSVA maftools MASS pheatmap pracma preprocessCore quadprog RColorBrewer samr survival survminer]; }; SMFI5 = derive2 { name="SMFI5"; version="1.0"; sha256="10qp33l0dig00y9gfhpzqig6dbkjw76ch9pfq64dn4xrdkpq1kx5"; depends=[corpcor ggplot2 reshape]; }; @@ -4827,6 +4831,7 @@ in with self; { SMVar = derive2 { name="SMVar"; version="1.3.3"; sha256="17wr4lixy3p32gr4jq02d7zsr88yrbddjsvynzdsdrwbxf4mwqhp"; depends=[]; }; SNFtool = derive2 { name="SNFtool"; version="2.3.1"; sha256="05hz230aq5wbzhknxzr4iqv3nqjhbpf66n6bp1rc5h2jgz2yfbwq"; depends=[alluvial ExPosition]; }; SNPMClust = derive2 { name="SNPMClust"; version="1.3"; sha256="1gad1jfla4qpczh8vpwyss5cckzgpffsyj0d71r8drbspr4i3r90"; depends=[MASS mclust]; }; + SNPannotator = derive2 { name="SNPannotator"; version="0.2.0.0"; sha256="080gxik9ab0n7vl7l3grmqdc63b3df8wqcr7m8bc1963x014g2cs"; depends=[data_table doParallel foreach ggplot2 httr jsonlite kableExtra openxlsx progress rmarkdown xml2]; }; SNPassoc = derive2 { name="SNPassoc"; version="2.0-11"; sha256="13njyhz4qk9kx9jv1hspzh1y8j8v8igxg9jcmlkfljvniam5cf6g"; depends=[BiocStyle Biostrings GenomicRanges ggplot2 haplo_stats IRanges mvtnorm org_Hs_eg_db plyr poisbinom S4Vectors survival tidyr TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; }; SNPfiltR = derive2 { name="SNPfiltR"; version="0.1.1"; sha256="1g0hj277cfx6n21zic2n96xlrg9dhziwmvk9hh1gx1vxr6qxb2zf"; depends=[adegenet cluster ggplot2 ggridges gridExtra Rtsne vcfR]; }; SNPknock = derive2 { name="SNPknock"; version="0.8.2"; sha256="121pdgvdffj61hw8x8m76na0cg5iw5gb586q05ikw5d959mmbzrs"; depends=[Rcpp RcppArmadillo RcppProgress Rdpack]; }; @@ -4843,7 +4848,7 @@ in with self; { SOMbrero = derive2 { name="SOMbrero"; version="1.4-1"; sha256="0b9w8xr067hz2lzvxn7xz3llzhyqynskh08rsx7d73gnm56kdcp2"; depends=[ggplot2 ggwordcloud igraph interp markdown metR scatterplot3d shiny]; }; SOP = derive2 { name="SOP"; version="1.0"; sha256="1c9haq0ds90rwhvmdicaxhzf7vz2m343491sw9qw7w7fbs4fn9fp"; depends=[MASS]; }; SOPC = derive2 { name="SOPC"; version="0.0.1"; sha256="0xji7c2v8rmsdvpk8g35m8bx9lk0cy29yc5f4q8zv8qjxiy9yz7v"; depends=[elasticnet]; }; - SOPIE = derive2 { name="SOPIE"; version="1.5"; sha256="0isvb2vzzpn57bq0ix2pfaqdnl5z8qk6v6fvf15vnxcqg2sm63q5"; depends=[ADGofTest circular]; }; + SOPIE = derive2 { name="SOPIE"; version="1.6"; sha256="1q6991l1wldywv685dv1pkd8ma8jlx4inqr6p1fw1xr7ymm8b1q2"; depends=[ADGofTest circular]; }; SOR = derive2 { name="SOR"; version="0.23.1"; sha256="1accs4bqy080nfmgkdg7bgamdrcwcn01y6nydvvq12w3v8asdvwh"; depends=[Matrix]; }; SOUP = derive2 { name="SOUP"; version="1.1"; sha256="0k8nlvl4681cz07xjazprcc0jhknfa5hgr7w1qxxmgrp3sprr8r4"; depends=[tensor]; }; SP2000 = derive2 { name="SP2000"; version="0.2.0"; sha256="01wrc7p36js20jv04zhphj2vq7qqfgxmrzic066wij0c0mnh0xn5"; depends=[DT jsonlite pbmcapply purrr rlist tibble urltools XML xml2]; }; @@ -4857,14 +4862,13 @@ in with self; { SPCALDA = derive2 { name="SPCALDA"; version="1.0"; sha256="1bmp2zz0favmpyp0ap8a2r1mg1nlan7zg5cj75drdnfpqlsn5vgl"; depends=[MASS]; }; SPCAvRP = derive2 { name="SPCAvRP"; version="0.4"; sha256="10bvr4lqnim40fihq495a4fy4f33pvfd7gsaqjj9bh6gy0z8y4mi"; depends=[MASS]; }; SPCDAnalyze = derive2 { name="SPCDAnalyze"; version="0.1.0"; sha256="0zaxlc4dw678s0v22ghv7mc4vqsgkcnmbxh7065w6qj9vm7pg5kz"; depends=[lme4 nlme plyr]; }; - SPECIES = derive2 { name="SPECIES"; version="1.0"; sha256="0p45llf2wjr467bqr4pbljfank9zz3fm42yl3i0r3jbkxgz0rjf0"; depends=[]; }; - SPEDInstabR = derive2 { name="SPEDInstabR"; version="1.8"; sha256="09kdky1v5vx1xjdlb27228hijfb2g70nxsddj950gdp9sllxkncz"; depends=[]; }; + SPEDInstabR = derive2 { name="SPEDInstabR"; version="1.9"; sha256="0z27h9yl5lyayqa1wqj700kxrgyi1h13bqm3bbq8zml91dyq209c"; depends=[]; }; SPEI = derive2 { name="SPEI"; version="1.7"; sha256="0lj7d3bbik7q4di5nqc3a1rn94z2y2v9x45r1jjkvgf03frj96qd"; depends=[ggplot2 lmomco]; }; SPIAssay = derive2 { name="SPIAssay"; version="1.1.0"; sha256="0y02122lj4v95g62w84jmdjdazfz3rch133aid5sgakj2kv68cvh"; depends=[]; }; SPIGA = derive2 { name="SPIGA"; version="1.0.0"; sha256="0yd06x5rh1h1s4v9apj43c90rkz8m5kssbny7y5mnw5mr2acds9b"; depends=[GA]; }; SPINA = derive2 { name="SPINA"; version="4.1.0"; sha256="0x7y150iq072qqci2niqk7j8pvhcylb7kdvwambg1r1gi3ffycm9"; depends=[]; }; SPIn = derive2 { name="SPIn"; version="1.1"; sha256="109xxrg7bsmmfd6ik85kxrw2qclxbh5ipsh5mmrdl4hki3hnyp2s"; depends=[quadprog]; }; - SPLICE = derive2 { name="SPLICE"; version="1.0.0"; sha256="1rmva1nl05f5dfv4nl7bcj6sa8rnpy9ikshasaa54r40217b5832"; depends=[SynthETIC zoo]; }; + SPLICE = derive2 { name="SPLICE"; version="1.1.0"; sha256="1jcw7nikla75aqfbplv2cklq19rfd8naamldvllzy2pjb879vqkk"; depends=[lifecycle SynthETIC zoo]; }; SPODT = derive2 { name="SPODT"; version="0.9-1"; sha256="01yq429a4s63855bwpn2mqjj2k3cz4187kfpi7n7qqdpdvmxz109"; depends=[rgdal sp tree]; }; SPORTSCausal = derive2 { name="SPORTSCausal"; version="1.0"; sha256="1ww1wi3kflwj1f5slfv0mfi7gbaj7y8rk1m3n15szpxb9zm8grks"; depends=[CausalImpact keras]; }; SPOT = derive2 { name="SPOT"; version="2.5.18"; sha256="1zgcvz78q8hd9bzhayv35rwgwansank1d9yb2qyihy3m0jw6c428"; depends=[DEoptim ggplot2 glmnet laGP MASS nloptr plgp plotly randomForest ranger rgenoud rpart rsm]; }; @@ -4873,10 +4877,10 @@ in with self; { SPREDA = derive2 { name="SPREDA"; version="1.1"; sha256="0fn4p5apjq8zgd3zms2b88ga5wbsv86y59ac5x06w75rf071xglv"; depends=[nlme survival]; }; SPRT = derive2 { name="SPRT"; version="1.0"; sha256="1r4pfqh8k5avi8qgpk5x1cy8lmkn341yvjvd2r7wqwb3mr242r0v"; depends=[]; }; SPSL = derive2 { name="SPSL"; version="0.1-9"; sha256="0kf6mmbvavid3dw2l4fkclk669wi13wkyykhwn5272d6qnhlhhca"; depends=[]; }; - SPSP = derive2 { name="SPSP"; version="0.1.0"; sha256="15ad0binagm1g1gmk11n0zxy3rbkz3n49cc1jaa0vvzbwcvhh65r"; depends=[glmnet lars MASS Rcpp]; }; + SPSP = derive2 { name="SPSP"; version="0.1.1"; sha256="0bzlgjijwp5y6lk9hjqc2p8b1i6mp8jd7j7gsl47whc3lavr1nn8"; depends=[glmnet lars Rcpp]; }; SPUTNIK = derive2 { name="SPUTNIK"; version="1.4"; sha256="1sspsvll7b03z2ag2iixydcbbjr2glg1n6k7m1lapq4ra77arh7i"; depends=[doSNOW e1071 edgeR foreach ggplot2 imager infotheo irlba reshape spatstat spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_sparse spatstat_utils testthat viridis]; }; SPYvsSPY = derive2 { name="SPYvsSPY"; version="0.1.1"; sha256="1hxc73wwrzqh1r1xr9yd4hy4ma24virg4iv978lfyc9f9n56znp5"; depends=[]; }; - SPlit = derive2 { name="SPlit"; version="1.0"; sha256="10al2qzcxirrzdsgrjhnh7k1l9faqfbqgy50a81bjns0v3kk4m27"; depends=[Rcpp RcppArmadillo]; }; + SPlit = derive2 { name="SPlit"; version="1.1"; sha256="0vxbwclcipf0wz391yp5qb8ndxqxq8pzkf4vz7fszdb70yrqa5b7"; depends=[Rcpp RcppArmadillo]; }; SPmlficmcm = derive2 { name="SPmlficmcm"; version="1.4"; sha256="1acs3560a7h6xx286m40abr9b7i5qihn6wni8flj0biahmsszzx6"; depends=[nleqslv]; }; SPreg = derive2 { name="SPreg"; version="1.0"; sha256="1702i86qcbnqyi7r5wc2ciyk3l46329kmnrz91jzqq85z8cwgak1"; depends=[sn ucminf]; }; SQB = derive2 { name="SQB"; version="0.4"; sha256="12ii8xlwd2r77bj76j7l43898ras25z3plhhv106jaklhpcnk23m"; depends=[caret nnet pls rpart]; }; @@ -4902,6 +4906,7 @@ in with self; { SSRA = derive2 { name="SSRA"; version="0.1-0"; sha256="1d0lg2dz8vf1d63366s5apm0ygrsfxivbrsij907r244zj6i1c37"; depends=[shape stringr]; }; SSRMST = derive2 { name="SSRMST"; version="0.1.1"; sha256="15s6vcmk8a27yw3rlfkajby6qkizp4sfiyi63m7hc86svd15x4wg"; depends=[survival survRM2]; }; SSRTcalc = derive2 { name="SSRTcalc"; version="0.3.3"; sha256="0m8qc1rzx3rag69m0jvanx524d49smkgnmj99fl54frzqh0ji1ss"; depends=[]; }; + SSVS = derive2 { name="SSVS"; version="1.0.0"; sha256="1x8s93cfhx6xrdknqmhgaqidk1qhgnbkdv9snpshvkfc92byh162"; depends=[bayestestR BoomSpikeSlab checkmate ggplot2 rlang]; }; SSrat = derive2 { name="SSrat"; version="1.1"; sha256="1mmwla7yqqldv0s5hqljq2k2qljdfhq97m5128gvf3iy7n2yjzgj"; depends=[plyr sna]; }; SSsimple = derive2 { name="SSsimple"; version="0.6.6"; sha256="1nhwr9kvlx899wsgzp47ykq3awp7p54zcvsdmjjh9ch4qcm9q2sm"; depends=[mvtnorm]; }; STAND = derive2 { name="STAND"; version="2.0"; sha256="07wrpmvk0jjlghvrb37xyai48vgzj0fby8y09qdxsxdlgwqg1f3s"; depends=[survival]; }; @@ -4923,26 +4928,25 @@ in with self; { STV = derive2 { name="STV"; version="1.0.2"; sha256="02cd78z2k08gg5kskw1m53dc2xyl9f8qhcnhvy9n90ckakw6h19h"; depends=[]; }; STraTUS = derive2 { name="STraTUS"; version="1.1.2"; sha256="0n3i7gbycp1f10058h9xlh3yk21w2izdb3xgs793mmh1i1sjy394"; depends=[ape ggplot2 ggtree gmp igraph phangorn RcppAlgos]; }; SUE = derive2 { name="SUE"; version="1.0"; sha256="0akv724s84v2zixvwywj1ydfnfvcjnaabv6gm0601nsrh6ij1mi6"; depends=[]; }; - SUMMER = derive2 { name="SUMMER"; version="1.2.0"; sha256="1y9mq6smpnhwl6ah6z57z0rcm4jqyi82076w0xb9ghwidncpszz4"; depends=[data_table ggplot2 ggridges Matrix RColorBrewer reshape2 shadowtext sp spdep survey survival viridis]; }; + SUMMER = derive2 { name="SUMMER"; version="1.2.1"; sha256="0wg9nz46dy5mll7dam8g24iaxn390lnggl7x2b88rrzy2kgcd11l"; depends=[data_table ggplot2 ggridges Matrix RColorBrewer reshape2 scales shadowtext sp spdep survey survival viridis]; }; SUNGEO = derive2 { name="SUNGEO"; version="0.2.288"; sha256="0c8y0ngx1020rw2v00rxmq8syd72f41ckik5sg7gigg7d80gi31w"; depends=[automap cartogram data_table dplyr fasterize httr jsonlite measurements packcircles purrr RANN raster Rcpp RCurl rlang rmapshaper sf sp spdep]; }; SVMMaj = derive2 { name="SVMMaj"; version="0.2.9"; sha256="1405gigyjfp8by8nfx4g3rhw9x6r6g7dkpgw52jllv6n4036xa3h"; depends=[dplyr ggplot2 gridExtra kernlab reshape2 scales]; }; SVMMatch = derive2 { name="SVMMatch"; version="1.1"; sha256="1ykwrhlid4hs466xh3kv6y2qdhgk0jiglg0l3zwk5qlni6p26zc9"; depends=[Rcpp RcppArmadillo]; }; SVN = derive2 { name="SVN"; version="1.0.1"; sha256="0n93lqb1f2s2qvzc8lrcqmr0fhd57xqbi0ymrqqmll31ns679m92"; depends=[data_table igraph memoise]; }; SWIM = derive2 { name="SWIM"; version="1.0.0"; sha256="1pfrwxn4rha7a68b82lq18x6acyhjy9d8nn2hdwd9hhf576vkvhg"; depends=[ggplot2 Hmisc nleqslv plyr Rdpack reshape2]; }; SWMPr = derive2 { name="SWMPr"; version="2.4.1"; sha256="1dqhsqigfbfj167mp2h0wfybaymj9zlywh5d3syrrmpr694f9kz5"; depends=[data_table dplyr ggplot2 gridExtra httr lattice maptools oce openair RColorBrewer reshape2 tictoc tidyr XML zoo]; }; - SWMPrExtension = derive2 { name="SWMPrExtension"; version="2.1.0"; sha256="1vb3gj3hpyr8cadgz01c151akyr4w6ss37hr9rz2fjdr8xq5ihp7"; depends=[broom dplyr EnvStats flextable ggplot2 ggthemes lubridate magrittr officer purrr RColorBrewer rlang scales sf SWMPr tidyr tidyselect]; }; - SWTools = derive2 { name="SWTools"; version="0.2.2.0"; sha256="07cp2v7njzzclq3x6wl55y8ymv5f55g1b31ss26xbiwsc4ri5z8k"; depends=[dplyr forcats ggmap ggplot2 ggrepel httr hydroTSM jsonlite lubridate magrittr RColorBrewer reshape2 rlang rmarkdown segmented sf stringr tibble tidyr zoo]; }; + SWMPrExtension = derive2 { name="SWMPrExtension"; version="2.1.1"; sha256="1d8lpz2ywr50m9w0a53rff26l33vx2a1lbx5hsiiq0mbg4m5r9jc"; depends=[broom dplyr EnvStats flextable ggplot2 ggthemes lubridate magrittr officer purrr RColorBrewer rlang scales sf SWMPr tidyr tidyselect]; }; + SWTools = derive2 { name="SWTools"; version="0.2.3.0"; sha256="04csm7m9xrs4d5b37yy2hzi35m03rm6kqxmzh8lwqj5qbyd07gdp"; depends=[dplyr forcats ggmap ggplot2 httr hydroTSM jsonlite lubridate magrittr readr reshape2 rlang rmarkdown segmented sf sp stringr tibble tidyr zoo]; }; SYNCSA = derive2 { name="SYNCSA"; version="1.3.4"; sha256="0n9za302x638s666xs86zy94qch9wn0rln8xy6x9jymhhq9zn0kj"; depends=[FD permute RcppArmadillo vegan]; }; SailoR = derive2 { name="SailoR"; version="1.2"; sha256="04qrnps40845ypapf37jg1c1g05nii6iwk4fv1x5xyca963hl5ii"; depends=[]; }; Sample_Size = derive2 { name="Sample.Size"; version="1.0"; sha256="1vfnb2gg3rax4sxd81xqznfvh300nv45nn7zjsyrdjyg1n3ym7nw"; depends=[]; }; SampleSize4ClinicalTrials = derive2 { name="SampleSize4ClinicalTrials"; version="0.2.3"; sha256="0s8svsgwh79rcwnskz0my2xqasyp370hn7aixqm9m6zqlvf42zc2"; depends=[]; }; SampleSizeMeans = derive2 { name="SampleSizeMeans"; version="1.1"; sha256="1wbc46n8b8wbcxl21blbzs5728dr8r0l8d3jpzbha8pcav0xrh1m"; depends=[]; }; - SampleSizeProportions = derive2 { name="SampleSizeProportions"; version="1.0"; sha256="0mvkvx3nni0l8ys68sq3h2zlbjvksdcdzxqlf03k0ca5bbcmdf9l"; depends=[]; }; SamplerCompare = derive2 { name="SamplerCompare"; version="1.3.2"; sha256="09j06ycr749dbr6xbn5pxw7rp1p3cri40z38hf1kp5kvjxkkpy2w"; depends=[mvtnorm]; }; SamplingBigData = derive2 { name="SamplingBigData"; version="1.0.0"; sha256="0khrh7vfqqzpfp16x0ic5ml854wr2fj28cx95s6c0pz91hzlxkns"; depends=[]; }; SamplingStrata = derive2 { name="SamplingStrata"; version="1.5-2"; sha256="1wqqcqka2an5ily91c2z8qw061xfbxgnxr783h584lbyx6ckzj4a"; depends=[doParallel glue memoise pbapply SamplingBigData]; }; SanFranBeachWater = derive2 { name="SanFranBeachWater"; version="0.1.0"; sha256="18w2q3hzcrbmagnjyrn1ikwiyjh723mjb2vy0d8p1a6za0460p9w"; depends=[dplyr lubridate magrittr readr rvest tibble xml2]; }; - SangerTools = derive2 { name="SangerTools"; version="1.0.1"; sha256="01r8nfpwspsrcxix536c4kc139vn2214hgn38qriz9l5giwfa7r3"; depends=[DBI dplyr ggplot2 ggtext ggthemes janitor magrittr odbc readr readxl scales]; }; + SangerTools = derive2 { name="SangerTools"; version="1.0.2"; sha256="0ijxfa1h3mx86jk1s27qp7l4sz2d7i7llkwjvgnih9zjk0ybrdzw"; depends=[DBI dplyr ggplot2 ggtext ggthemes janitor magrittr odbc readr readxl rlang scales tibble]; }; Scalelink = derive2 { name="Scalelink"; version="1.0"; sha256="0likfjw5999zd0kv1ykby78bl0x3xgh0v1yjssk7fnw1ghkxgdib"; depends=[Rcpp RcppParallel]; }; SciViews = derive2 { name="SciViews"; version="0.9-13.1"; sha256="0wm4vnjh65jxyg82m8l08kanl414qiaz0cc6srshb8sdx2sixkfi"; depends=[ellipse]; }; ScoreEB = derive2 { name="ScoreEB"; version="0.1.1"; sha256="0lvdywkw2g0xdgf7zj39h1903rd0jg2lzgqq7cfni11pniv6265n"; depends=[data_table]; }; @@ -4991,7 +4995,7 @@ in with self; { SeqMADE = derive2 { name="SeqMADE"; version="1.0"; sha256="0nf1xjhk0kpmmzgcxycg3ccxvwq6gydjq7xq6n9m7k7v35v9v3qf"; depends=[MASS]; }; SeqNet = derive2 { name="SeqNet"; version="1.1.3"; sha256="1ix3c249q758si6670hqa56g1snqqwqdrwshfwajvynl7k2zqzmv"; depends=[fitdistrplus ggplot2 igraph mvtnorm purrr Rcpp Rdpack rlang tibble]; }; SequenceSpikeSlab = derive2 { name="SequenceSpikeSlab"; version="1.0.0"; sha256="1aa89qnx43ia6lkaaz26jcrx8i9yxjsx5dpz8rpa0hv1h12g5ani"; depends=[Rcpp RcppProgress selectiveInference]; }; - Sequential = derive2 { name="Sequential"; version="4.1"; sha256="1wl499i18nkxjwv27c030jsxij2wa68c99h2wa445wa5xrhn6kvx"; depends=[boot]; }; + Sequential = derive2 { name="Sequential"; version="4.2"; sha256="0ilpbzxgdqp8xzhyk51kvzigy0s8vpcwsjq9j7n83ca37anc83hf"; depends=[boot]; }; SequentialDesign = derive2 { name="SequentialDesign"; version="1.0"; sha256="1gi37pixwbpy7358id1c75rckr352hs8vjs8sk8qgsr97pkm5xdq"; depends=[Sequential]; }; SetMethods = derive2 { name="SetMethods"; version="3.0"; sha256="14hh1rb8bma0cx3v9dmn58mkv6sky7xcnhwxwij5x8hp93a1i9is"; depends=[admisc betareg fmsb ggplot2 ggrepel QCA scatterplot3d stargazer]; }; SetRank = derive2 { name="SetRank"; version="1.1.0"; sha256="0p7vwsw05s5hfw1mfh3fbm9nfzsymnxzrdjin7k21dx7asb618wy"; depends=[data_table igraph XML]; }; @@ -5019,7 +5023,7 @@ in with self; { SigOptR = derive2 { name="SigOptR"; version="0.0.1"; sha256="1sylchhhz6kx4r8jx95cvsmjsacjh8pin7acf2fyw2a4nlx9r1a6"; depends=[httr jsonlite]; }; SigTree = derive2 { name="SigTree"; version="1.10.6"; sha256="18gh7azjr979ijc2y4yyskj24ay697rw3j7znc5p4a63s4vpxr9w"; depends=[ape MASS phyext2 phylobase phyloseq RColorBrewer vegan]; }; SightabilityModel = derive2 { name="SightabilityModel"; version="1.4.2"; sha256="0hll6cfl0zkxvdbfs7cdmqazinyyrg9vk4px2gb9s1dqix7cyvv5"; depends=[formula_tools Matrix msm plyr survey]; }; - Signac = derive2 { name="Signac"; version="1.5.0"; sha256="1dl05n2pmfn8yk1p1073a47l6d54p5wc46h5lzfcll9s58qgpq64"; depends=[BiocGenerics data_table dplyr fastmatch future future_apply GenomeInfoDb GenomicRanges ggforce ggplot2 ggrepel ggseqlogo IRanges irlba lsa Matrix patchwork pbapply qlcMatrix Rcpp RcppRoll Rsamtools S4Vectors scales Seurat SeuratObject stringi tidyr]; }; + Signac = derive2 { name="Signac"; version="1.6.0"; sha256="1fh0n15snbj3cv1wfzl084188g9xsxxi4j511j3rvji3ik0nbd6z"; depends=[BiocGenerics data_table dplyr fastmatch future future_apply GenomeInfoDb GenomicRanges ggforce ggplot2 ggrepel ggseqlogo IRanges irlba lsa Matrix patchwork pbapply qlcMatrix Rcpp RcppRoll Rsamtools S4Vectors scales Seurat SeuratObject stringi tidyr tidyselect]; }; SignacX = derive2 { name="SignacX"; version="2.2.5"; sha256="0b38k3lxca985mqwvbbdczkjnn2x79kga05yw995gb6d20cjh96v"; depends=[igraph jsonlite lme4 Matrix neuralnet pbmcapply RColorBrewer RJSONIO Seurat]; }; SignifReg = derive2 { name="SignifReg"; version="4.2"; sha256="0bgw6dkn15rlpcqfpbar3nxvcvwd0afa3lss4idnb65kvcyzzljk"; depends=[car]; }; Sim_DiffProc = derive2 { name="Sim.DiffProc"; version="4.8"; sha256="16pzcs1g5ihza9a2glnkgd5pxi77l6w34vkn0vxcb78gc6syhbrd"; depends=[Deriv MASS]; }; @@ -5051,11 +5055,9 @@ in with self; { SimilaR = derive2 { name="SimilaR"; version="1.0.8"; sha256="1wlxscl94r3gxwsc9yw0y4z5nj28nxilijp0pbzv4z2n4aqc7vy6"; depends=[BH Rcpp stringi]; }; SimilarityMeasures = derive2 { name="SimilarityMeasures"; version="1.4"; sha256="1w4klcln4hy9vcik9csg7b3b8kk4raxgckwfrhqg089d80xbqsxj"; depends=[]; }; Simile = derive2 { name="Simile"; version="1.3.3"; sha256="1izyjp18m1inac3svkf59z3lddrv44m7pdkhisgkr987xs8gdch4"; depends=[]; }; - SimpleTable = derive2 { name="SimpleTable"; version="0.1-2"; sha256="1rkybrp7zlb7cj37799npss1ldic0yf519q5l7a6ikal4yl1afyb"; depends=[hdrcde locfit MCMCpack]; }; SimplicialCubature = derive2 { name="SimplicialCubature"; version="1.3"; sha256="06dpbawn650lzybd5j4xkygbg5s2nqfz6b4g0skm4z7lsb2d9dhb"; depends=[]; }; SimplifyStats = derive2 { name="SimplifyStats"; version="2.0.4"; sha256="08775g6fdx09y8pkfq4k8zxbxpwah7yqq5cg30lmxl7zrpmza5hv"; depends=[assertthat broom dplyr moments tibble]; }; SimplyAgree = derive2 { name="SimplyAgree"; version="0.0.2"; sha256="1jax36yqr1j9zwbv69x81fyyd5ymy84k9mvvn3qvvngab6daqxlg"; depends=[boot cccrm dplyr emmeans ggplot2 jmvcore lme4 magrittr sjstats stringr tidyr tidyselect]; }; - Simpsons = derive2 { name="Simpsons"; version="0.1.0"; sha256="1pm6wga1yxc35zgz72plzq23d3l4bbzfdvhszdxmkn1pkk64h8ms"; depends=[mclust]; }; SinIW = derive2 { name="SinIW"; version="0.2"; sha256="1z7rcjy0i09a9hjpjj1x8i46lv042l20lvb6b0pnsky2sx3v78pd"; depends=[fdrtool pracma]; }; SingleCaseES = derive2 { name="SingleCaseES"; version="0.5.0"; sha256="17fvh327cwc809v3zkz3xqb0i1nc954xha60yq6wjc8n33d8qlqy"; depends=[dplyr magrittr purrr rlang tidyr tidyselect]; }; SiteAdapt = derive2 { name="SiteAdapt"; version="1.1.0"; sha256="1k79j29d92a8m578xj61iavljikksdmjr2vlzwmdvxpa6rp1i2ff"; depends=[ggplot2 ggpubr glmulti hydroGOF hyfo RColorBrewer solaR]; }; @@ -5109,6 +5111,7 @@ in with self; { SpNMF = derive2 { name="SpNMF"; version="0.1.1"; sha256="1xybxx47i3ww5d7chwl38xc48fbsclgyxcki8h85c6dkm49dxy8i"; depends=[NMF]; }; SpNetPrep = derive2 { name="SpNetPrep"; version="1.2"; sha256="1jhjyrb0k5z21vn9bc444rxax3lxsyzyhggrcy7zl9ps7p4ra990"; depends=[leaflet maptools prodlim raster rgdal shiny shinythemes sp spatstat spatstat_core spatstat_geom spatstat_linnet]; }; SpaCCr = derive2 { name="SpaCCr"; version="0.1.0"; sha256="0qm1fr6nnax3i1i77fi73x1z8db557avh6kivs0nskb1dfj8ri4m"; depends=[abind dplyr ggplot2 Rcpp RcppArmadillo tidyr]; }; + SpaDES = derive2 { name="SpaDES"; version="2.0.8"; sha256="0gzhhqfszssf56v7mi735znwk4x061k5rar3baibs1qdf17p0c12"; depends=[quickPlot reproducible SpaDES_core SpaDES_tools]; }; SpaDES_addins = derive2 { name="SpaDES.addins"; version="0.1.3"; sha256="0bhn9rj9p5rkcxz0pn2n1l3vij6khxhla0vgzrazh9f7s4hyyymp"; depends=[devtools magrittr miniUI reproducible rstudioapi shiny SpaDES_core stringi]; }; SpaDES_core = derive2 { name="SpaDES.core"; version="1.0.10"; sha256="0yg3fdw1m7gfr9g3zy73qnpqb33v0brkx68fwmlbmygfk9yhzqh5"; depends=[crayon data_table fastdigest igraph qs quickPlot raster reproducible Require whisker]; }; SpaDES_tools = derive2 { name="SpaDES.tools"; version="0.3.10"; sha256="151csnabpckzl3jgxj26jnfnghkmahdp35rf7r0wmajcaddhfk5s"; depends=[backports checkmate CircStats data_table fastmatch fpCompare magrittr quickPlot raster Rcpp Require rgeos sp]; }; @@ -5123,7 +5126,7 @@ in with self; { SparseMDC = derive2 { name="SparseMDC"; version="0.99.5"; sha256="0d3ashk3l9fjdbiyjhaxc05ayyscissrg7lwhnh46hv3fydbixlj"; depends=[doParallel doRNG foreach]; }; SparseMSE = derive2 { name="SparseMSE"; version="2.0.1"; sha256="1alpvj0ya3r64wwfdzz2aaxgaf6512glzl65p97606c2fwrm6db7"; depends=[lpSolve Rcapture]; }; SparseTSCGM = derive2 { name="SparseTSCGM"; version="4.0"; sha256="01lfb3j907244hgapb85kba7zdmgzhw452gri208qgrjzfv2x9yh"; depends=[abind glasso huge longitudinal MASS mvtnorm network]; }; - SpatEntropy = derive2 { name="SpatEntropy"; version="2.0-1"; sha256="1hr81babgml8mikpfkzk99xhpmxg36dxi9m7f22p23mhvg1xmn5i"; depends=[spatstat spatstat_core spatstat_geom spatstat_linnet]; }; + SpatEntropy = derive2 { name="SpatEntropy"; version="2.1-1"; sha256="0navil5wjzw67diz87ijnaikx4ws7fnbqqbmpdxhla6dfdd8yhd5"; depends=[spatstat spatstat_core spatstat_geom spatstat_linnet spatstat_random]; }; SpatialAcc = derive2 { name="SpatialAcc"; version="0.1-4"; sha256="09rkzfzg6nh4n7dizkqrz651kp617l2557c9qpxacspl3ngbm82i"; depends=[sp]; }; SpatialBSS = derive2 { name="SpatialBSS"; version="0.12-0"; sha256="173zr8r0wp7zcg4ziqagfzzlwf5gjcywj5nqvsnnpwbgjagpfla1"; depends=[JADE Rcpp RcppArmadillo sp]; }; SpatialBall = derive2 { name="SpatialBall"; version="0.1.0"; sha256="09iy1smfqnb0rd2s9a1wqgscb1plwcwwph6a8215l4zrs6svszv2"; depends=[dplyr ggplot2 hexbin lubridate RColorBrewer]; }; @@ -5131,7 +5134,7 @@ in with self; { SpatialExtremes = derive2 { name="SpatialExtremes"; version="2.0-9"; sha256="1mhn1c8n3bmgf0fjyac3wji4790zswzkqliqcv3n8kv9806crb0y"; depends=[fields maps]; }; SpatialFloor = derive2 { name="SpatialFloor"; version="1.1.0"; sha256="07mwgcvkkq478l6wxvrdjs9d578x0kgs5xy86lgy5my0xqfcv6y8"; depends=[blocksdesign fields reshape2 taRifx]; }; SpatialGraph = derive2 { name="SpatialGraph"; version="1.0-2"; sha256="0cwswa5g3a6ng8qkwi04jz9pma4i0c16m7jpq6z3djzjin0znyk2"; depends=[igraph rgeos shape sp splancs]; }; - SpatialKDE = derive2 { name="SpatialKDE"; version="0.6.2"; sha256="00gdx9jhfybxvfigsym122wfc72vks9bs4zlsij5wp9d1l3r0kfr"; depends=[dplyr glue magrittr raster Rcpp rlang sf vctrs]; }; + SpatialKDE = derive2 { name="SpatialKDE"; version="0.7.0"; sha256="0qmky12886bw2i7lnhcqq9zzyzmbh1670c8l2adqjiz9k0cykmp4"; depends=[dplyr glue magrittr raster Rcpp rlang sf vctrs]; }; SpatialKWD = derive2 { name="SpatialKWD"; version="0.4.0"; sha256="0nsrf30bl3yc1h1kldv1ah1jjb4qh4hd99rd1nz9q9rqmdp0dcrw"; depends=[Rcpp]; }; SpatialML = derive2 { name="SpatialML"; version="0.1.3"; sha256="0akip0kkd1jjid12iwmaxkhkvcfzkxmrnrsv0b6nnvpjdl1jb589"; depends=[randomForest]; }; SpatialNP = derive2 { name="SpatialNP"; version="1.1-5"; sha256="0cxh1f4182mfihq6m82zh2lgafrsiqvgrfxbk66zkjrrbfn8gkcl"; depends=[]; }; @@ -5155,13 +5158,13 @@ in with self; { Spillover = derive2 { name="Spillover"; version="0.1.0.1"; sha256="0jwhih0jzd6grd9y967k7j5vwv9sd20xqi2270y1cgl64v21bjzm"; depends=[fastSOM vars zoo]; }; Splinets = derive2 { name="Splinets"; version="1.0.0"; sha256="1fws9svxvn03xgfqmqwr169wgl544zv87yrdi4nl5z32cq5c9yk5"; depends=[]; }; SplitGLM = derive2 { name="SplitGLM"; version="1.0.2"; sha256="0708jz8j44lw6zs5f6w4v9pf7apd22j15g7lszc8kwlm8xsnnkf6"; depends=[Rcpp RcppArmadillo]; }; - SplitKnockoff = derive2 { name="SplitKnockoff"; version="1.0"; sha256="0mnjrxcd5gq723i9cf62jpijyl879j8lkp808mm860islnqsm1qq"; depends=[ggplot2 glmnet latex2exp MASS Matrix mvtnorm RSpectra]; }; + SplitKnockoff = derive2 { name="SplitKnockoff"; version="1.1"; sha256="090q3hw010rnnqj7qi615h6xlbkaxkrv9gsaxdfwhcffvpfi9anr"; depends=[ggplot2 glmnet latex2exp MASS Matrix mvtnorm RSpectra]; }; SplitReg = derive2 { name="SplitReg"; version="1.0.2"; sha256="1s012qldrsq8rpfpzf7kyd7631b65zai269x53xcaqn75r5ssh3f"; depends=[Rcpp RcppArmadillo]; }; SplitSoftening = derive2 { name="SplitSoftening"; version="2.1-0"; sha256="1fgcqax81zpknw642fm9dx1f6dpdgbcf3va0m1bhj6kl98yq7dqd"; depends=[]; }; SportsAnalytics = derive2 { name="SportsAnalytics"; version="0.2"; sha256="1vb080ak1mfvr6d0q9i3r8hd547ba80bavjdcri0gclqqcjf1ach"; depends=[]; }; SportsTour = derive2 { name="SportsTour"; version="0.1.0"; sha256="06d66yv0b7c3mg1bcnrlg576njxgri107ni0vnl27hzf46fyidwa"; depends=[]; }; SpotSampling = derive2 { name="SpotSampling"; version="0.1.0"; sha256="0s47dvigzkcl9ynrdiwrjzwap18dpkb29jngi8ddvf9m4xywj4al"; depends=[BalancedSampling MASS pracma sampling WaveSampling]; }; - SqlRender = derive2 { name="SqlRender"; version="1.8.3"; sha256="0j03lrxv3pakfyay8hnjk4523f22ch5v6hfvwjpyqvcdw0ip4v8q"; depends=[rJava rlang]; }; + SqlRender = derive2 { name="SqlRender"; version="1.9.0"; sha256="1ivikd86kb6z5w6i7aqpn9a51g9z6p298amf36l1a9azqwggxm5l"; depends=[rJava rlang]; }; Sshaped = derive2 { name="Sshaped"; version="1.0"; sha256="0zvbgn9hxp2a23g3q028k8ywrwkbzx17a3szvmbj0gcn3kcafvdi"; depends=[Rcpp RcppArmadillo]; }; Sstack = derive2 { name="Sstack"; version="1.0.1"; sha256="137vsas2kw3l37c141g51sgx0j6z8ys6hbxjmsdymz1fxsjr4adg"; depends=[doParallel dplyr foreach randomForest]; }; StAMPP = derive2 { name="StAMPP"; version="1.6.3"; sha256="0yqvy4yw9ccsbpjm6z1b9lh3435minfl7acnc1ha0zgiw8bvs2n2"; depends=[adegenet doParallel foreach pegas]; }; @@ -5178,7 +5181,7 @@ in with self; { Stat2Data = derive2 { name="Stat2Data"; version="2.0.0"; sha256="1fpp3b4k7x915a9wkpyj4dvvqp0wz7c3lpbh154vrxrdsr712z0k"; depends=[]; }; StatDA = derive2 { name="StatDA"; version="1.7.4"; sha256="1ld7fx1lip54n24r2d9zvd4hri3w02vd174bdi8pi9j5n8xpxl02"; depends=[cluster e1071 geoR MASS MBA mgcv rgl robustbase sgeostat sp xtable]; }; StatDataML = derive2 { name="StatDataML"; version="1.0-26"; sha256="1lcckapbhqdbg6alnhm2yls66lnkxnxamdlzx6pbfqv1dhsy36gf"; depends=[XML]; }; - StatMatch = derive2 { name="StatMatch"; version="1.4.0"; sha256="0nd4s57rzq4zgi5b7krbdhz9vwxvj5j63kazdyhlwwqk4b6r2042"; depends=[ggplot2 lpSolve proxy survey]; }; + StatMatch = derive2 { name="StatMatch"; version="1.4.1"; sha256="1iavyaj6q8rbvhki98q8zwikfrgjrp6w8prhnqhiv0yb8k27jm0c"; depends=[ggplot2 lpSolve proxy survey]; }; StatMeasures = derive2 { name="StatMeasures"; version="1.0"; sha256="1bnbz803xx8kqhy1cx545b35si6f10za0mp5z82qfvd4kv9a9izz"; depends=[data_table]; }; StatPerMeCo = derive2 { name="StatPerMeCo"; version="0.1.0"; sha256="1nm6brlj6h7jx8nqagrfk294ay3pfmkiizabwlb87qfnsfwchpk3"; depends=[]; }; StatRank = derive2 { name="StatRank"; version="0.0.6"; sha256="14d8v3bp8vgksi6q0mxajwd9s8zi6lns3qwi1vcr5xp9rjp4n6iy"; depends=[ggplot2 plyr truncdist]; }; @@ -5225,7 +5228,7 @@ in with self; { SunterSampling = derive2 { name="SunterSampling"; version="1.0.1"; sha256="0qfld3j8xlpgp7c58zqw6gzm38m4d740lvdj5vmcflfcc6ja98sf"; depends=[]; }; SupMZ = derive2 { name="SupMZ"; version="0.2.0"; sha256="1n81wqacrpk5x6i1pd1zsjivv2jk41743kg1h7gnp0rb3k58vp7r"; depends=[dplyr magrittr]; }; SuperExactTest = derive2 { name="SuperExactTest"; version="1.0.7"; sha256="1ysfsdzbkldcn7hzxhqikf5h2h9747xhfrirqgr8xx8q81wq989s"; depends=[]; }; - SuperGauss = derive2 { name="SuperGauss"; version="2.0.2"; sha256="1wbx1s1260qg731n4zj212b6kffdppxw1fg0n8yjp2mc8zgp7r9d"; depends=[fftw R6 Rcpp RcppEigen]; }; + SuperGauss = derive2 { name="SuperGauss"; version="2.0.3"; sha256="174gicpk2jwbzg39m44sxp7506cja9cnn95r287sq7049lrj302a"; depends=[fftw R6 Rcpp RcppEigen]; }; SuperLearner = derive2 { name="SuperLearner"; version="2.0-28"; sha256="00any24msgflyagy87nznpfjz5g9v15frqda6c679wa8plx26hjz"; depends=[cvAUC gam nnls]; }; SuperPCA = derive2 { name="SuperPCA"; version="0.4.0"; sha256="0bpcxg9rh3ig5fzml026glws13daf5hiqbvdy7hsriv8y8qlxnfk"; depends=[fBasics glmnet MASS matlab matlabr Matrix matrixStats pracma psych R_matlab RSpectra spls timeSeries]; }; SuperRanker = derive2 { name="SuperRanker"; version="1.2.0"; sha256="01wilk3cy33z50yhg4i4gci298fj8s4xbrkb7k3i9gn8q13vviin"; depends=[prodlim Rcpp]; }; @@ -5239,20 +5242,17 @@ in with self; { SurrogateTest = derive2 { name="SurrogateTest"; version="1.3"; sha256="0vs1ii3l6i6cmswyv6xjbya5filfixppyzmnw099g9s4x8kn0kq7"; depends=[survival]; }; SurvCorr = derive2 { name="SurvCorr"; version="1.0"; sha256="01rqdl503q1qnkn49iqnsjzis6azdsfi6s2hjky5k2zd6c9g18k5"; depends=[fields survival]; }; SurvDisc = derive2 { name="SurvDisc"; version="0.1.1"; sha256="0ajvnm0a4krbm0m584bg58hd7dzl0f2rz5as1zsajx8agywb5qmv"; depends=[cubature MASS mvtnorm nlme simex survival]; }; - SurvGSD = derive2 { name="SurvGSD"; version="1.0.0"; sha256="0aa5zaf9akkqkxs8iqwnm93sfwakhhhs3qfafbk0vrwmb5yvzzm1"; depends=[flexsurv ldbounds mnormt]; }; SurvHiDim = derive2 { name="SurvHiDim"; version="0.1.1"; sha256="1kix00zfrbx11pwx2dfag8vz5nvf8siw2kbxi8g4fb7xib9wh2na"; depends=[factoextra glmnet igraph Rdpack readr survival tidyverse useful]; }; SurvLong = derive2 { name="SurvLong"; version="1.1"; sha256="1lkbz5wa6ggwvg2aq13bc4hm6lqsj3wal5c33kamnrg9pk2cssj8"; depends=[]; }; SurvMI = derive2 { name="SurvMI"; version="0.1.0"; sha256="0qgsgz11vz73v83bkxrrjwk7i26rllkxk97if3nw2rgl9jnmiih0"; depends=[survival zoo]; }; - SurvMetrics = derive2 { name="SurvMetrics"; version="0.4.0"; sha256="1z5m46f5yl4iiczbhbygvwfl7iklhna7cvqwf9sdl39cfljhfk2c"; depends=[MASS survival survminer]; }; + SurvMetrics = derive2 { name="SurvMetrics"; version="0.4.5"; sha256="0mdvygcx7cdffsfyxzg30ri9n2kn31cbwy6izq9g7dm2g0gxplg8"; depends=[MASS survival survminer]; }; SurvRegCensCov = derive2 { name="SurvRegCensCov"; version="1.5"; sha256="0p39xqrnx2x0fgdfdr9ffv2x9zcgi53kqya821gpbnn3ccjzxx58"; depends=[numDeriv survival]; }; SurvTrunc = derive2 { name="SurvTrunc"; version="0.1.0"; sha256="0b6s7llljp75agd57lmc1yq5acnfwy113khrfjcbm1l5ply6pz7f"; depends=[survival]; }; - Survgini = derive2 { name="Survgini"; version="1.0"; sha256="1gxkdv2j1njbgnwb52vyhz7p2lrcg3hp6sry3kyhp4wkvf6gnhxi"; depends=[survival]; }; SurviMChd = derive2 { name="SurviMChd"; version="0.1.1"; sha256="1sj3i950nmam3r70as85kdx6nd88iidb5jpiz2a5a39i5lb7mgf7"; depends=[dplyr ICBayes icenReg R2jags Rdpack readr rjags rlang survival tidyverse]; }; SvyNom = derive2 { name="SvyNom"; version="1.1"; sha256="1jym2x6nd9a3y7nk5hflqpy54gs67y4sqqspkvkalf5l2cc64did"; depends=[Hmisc rms survey survival]; }; SwarmSVM = derive2 { name="SwarmSVM"; version="0.1-6"; sha256="09xq7jx70qjyhblzh6kc40hdr0636rqqdnbka7m6rawhd8ivp8yz"; depends=[BBmisc checkmate e1071 kernlab LiblineaR Matrix SparseM]; }; SwimmeR = derive2 { name="SwimmeR"; version="0.13.0"; sha256="16vimqdbsj7nb1cv0in6qza00qicajpdcpmzf3lv47wm5kp2iv6n"; depends=[dplyr magrittr pdftools purrr readr rvest stringr xml2]; }; SwissAir = derive2 { name="SwissAir"; version="1.1.5"; sha256="0lh69924vhyilgn562jqn8m7z4dq3xmdj09501sbs7hbxfaiiyly"; depends=[]; }; - SyNet = derive2 { name="SyNet"; version="2.0"; sha256="0mb9dscddkvmkf7l3bbcy4dlfmrvvy588vxdqy5dr783bpa5dkiw"; depends=[tkrplot]; }; SyScSelection = derive2 { name="SyScSelection"; version="1.0.2"; sha256="16zx507hlzhdxbh6gzndbgmzpyp6vc59h441l4gv8lx58zi9kyjd"; depends=[pracma]; }; SymTS = derive2 { name="SymTS"; version="1.0-1"; sha256="1g1kjcba25g3nphbndkzvkipvihiqb6lvijsicqr7qh57g94gqpl"; depends=[]; }; SymbolicDeterminants = derive2 { name="SymbolicDeterminants"; version="2.0.0"; sha256="0hf9b9g2vgpyqbxgi5rkkls2b8vw1zrwl8lymwvwb6y1vwfl9pym"; depends=[arrangements fs]; }; @@ -5260,7 +5260,7 @@ in with self; { SyncRNG = derive2 { name="SyncRNG"; version="1.3.0"; sha256="0sywfmmy6mq6qsxkxjc67665snn1jds01j3h7ni1200igja139g2"; depends=[]; }; SynchWave = derive2 { name="SynchWave"; version="1.1.1"; sha256="127hllvig8kcs9gr2q14crswzhacv6v2s4zrgj50qdyprj14is18"; depends=[fields]; }; Synth = derive2 { name="Synth"; version="1.1-5"; sha256="1cfvh91nz6skjk8jv04fhwv3ga9kcsfgq3mdy8lx75jkx16zr0pk"; depends=[kernlab optimx]; }; - SynthCast = derive2 { name="SynthCast"; version="0.2.0"; sha256="1jw6w32cdi1nyr1ljswylci39mp74i0i7ix75j44dghvql9a99rn"; depends=[dplyr forcats Synth tidyr]; }; + SynthCast = derive2 { name="SynthCast"; version="0.2.1"; sha256="0gln7x1vlfdnr0qaqgagr93r484hv3dp65n24b3wl3p02msz9bgn"; depends=[dplyr forcats Synth tidyr]; }; SynthETIC = derive2 { name="SynthETIC"; version="1.0.2"; sha256="1z7jyal707a93hv0fsgnkxpnywqw6ksifk0546alzm32g5lp4655"; depends=[ggplot2 magrittr rlang]; }; SynthTools = derive2 { name="SynthTools"; version="1.0.1"; sha256="19vasz3nnm5vgwqs6g2a5bibmk44br1bxga5zavsx938x3jw9gnd"; depends=[dplyr magrittr Rdpack]; }; SystemicR = derive2 { name="SystemicR"; version="0.1.0"; sha256="1vk08w734zxvrwzd81iy0azwcj53k6wvgc1qlaxw96hirdwdg6zr"; depends=[igraph Matrix quantreg xts]; }; @@ -5282,7 +5282,6 @@ in with self; { TCGAretriever = derive2 { name="TCGAretriever"; version="1.5"; sha256="1xg1rz2h5jbpdd5axli3ripqxb0bj64yrd4y5nzr8axajiaybkj9"; depends=[httr]; }; TCIApathfinder = derive2 { name="TCIApathfinder"; version="1.0.6"; sha256="15f3w6vhbqy4xzidxasjnqigxchd3jbr2kpm3gggjnkp7rzsfgaf"; depends=[httr jsonlite]; }; TCIU = derive2 { name="TCIU"; version="1.2.0"; sha256="0cyagbvcb8x1bszwq8id75838n53l1kcdah7hhm679j2wm4i487s"; depends=[AnalyzeFMRI cubature doParallel dplyr DT extraDistr fancycut fmri foreach forecast geometry ggplot2 ggpubr gridExtra ICSNP MultiwayRegression plotly pracma RColorBrewer reshape2 rrcov scales spatstat_core spatstat_geom tidyr zoo]; }; - TDA = derive2 { name="TDA"; version="1.8.5"; sha256="16dpbgwkp58ibjck3yjziv5p852vn8qxv4v77z17r18909a0j8lp"; depends=[BH FNN igraph Rcpp RcppEigen scales]; }; TDAkit = derive2 { name="TDAkit"; version="0.1.2"; sha256="1gvcv3016kjk98qm07i972fi66bcljj1avmagyc8qxs29cq3ngg3"; depends=[energy ggplot2 maotai Rcpp RcppArmadillo Rdpack T4cluster TDAstats]; }; TDAmapper = derive2 { name="TDAmapper"; version="1.0"; sha256="0cxgr2888v8azgdr3sg4vlcdyivkrxkk6dsp1ahv4frrwvg2z09k"; depends=[]; }; TDAstats = derive2 { name="TDAstats"; version="0.4.1"; sha256="1zmickqk60vm9rzy67hib835v3c45aqjk441p31vpbvhbiy58nq5"; depends=[ggplot2 Rcpp]; }; @@ -5290,7 +5289,7 @@ in with self; { TDD = derive2 { name="TDD"; version="0.4"; sha256="193y8brybkjsajrbnlx1sdnw1wyyn9rhlm5wvp4aamqhvi8z13vn"; depends=[pracma RSEIS signal]; }; TDMR = derive2 { name="TDMR"; version="2.2"; sha256="19ljgj5iy41m7rrawzkxkln7acydssk8zm05k3sfb483s8zygwiq"; depends=[adabag SPOT testit twiddler]; }; TDPanalysis = derive2 { name="TDPanalysis"; version="1.0"; sha256="0kvbsgwl7b9a3hn4d3snajqmynbajd2d8lc1na0hri2cv8qm8x9h"; depends=[plyr]; }; - TDbook = derive2 { name="TDbook"; version="0.0.4"; sha256="04ljp2rxk959143wri4l5xq4yhby0ld42a0s9z027i1z7qn4072v"; depends=[]; }; + TDbook = derive2 { name="TDbook"; version="0.0.5"; sha256="0g3kj17l176j7sg5vf3992icg61sbrjkhjmp7j53hpxz8xh2kygg"; depends=[]; }; TDboost = derive2 { name="TDboost"; version="1.2"; sha256="0sc9vby4892gm5b5h8gbdl4misqvgbkfp8fms53dk83malxkw1zx"; depends=[lattice]; }; TE = derive2 { name="TE"; version="0.3-0"; sha256="15530a5qjlh74c1qji76j25mm4c59gifp34y066f8j21f70rahfs"; depends=[MASS rainbow]; }; TEAM = derive2 { name="TEAM"; version="0.1.0"; sha256="1yj7fw935rr7fh7h2p4ra8d3ynz5c6b30fqzm1djgav1k84wcin2"; depends=[ggplot2 ks plyr]; }; @@ -5310,10 +5309,11 @@ in with self; { TITAN2 = derive2 { name="TITAN2"; version="2.4.1"; sha256="16zf42s1as2xrvyhd0lnv36mgnr5w19xv11pkl0k8imb5bdkhxa2"; depends=[cowplot dplyr ggplot2 ggridges glue purrr snow tibble]; }; TInPosition = derive2 { name="TInPosition"; version="0.13.6.1"; sha256="1c0h9zg71whmsjn5rnzv5kdrabl9kqrq627caznvrpa74c7pjks9"; depends=[ExPosition InPosition prettyGraphs TExPosition]; }; TLMoments = derive2 { name="TLMoments"; version="0.7.5.2"; sha256="0l9d4yafkkn3qdg9ypy3fiqnzxzv8yzxkq6mh1j28g94s4h6lybh"; depends=[ggplot2 hypergeo lmomco Rcpp]; }; - TMB = derive2 { name="TMB"; version="1.7.22"; sha256="116k7ffgadhkqq4lckfd4403qvybcls1hcs1ap1b7lkylghjahf2"; depends=[Matrix RcppEigen]; }; + TMB = derive2 { name="TMB"; version="1.8.0"; sha256="158spsz8inxhs3dw6cq2wwkkhvgkfjyyz577s89x08yly7layq2l"; depends=[Matrix RcppEigen]; }; TMDb = derive2 { name="TMDb"; version="1.1"; sha256="062n9mi2f9g2xxpnymja57xnpl855d8mwyfwci7a8cq4c7w7avj7"; depends=[httr jsonlite stringi]; }; TMTI = derive2 { name="TMTI"; version="0.1.0"; sha256="16fa512f8hhfsinn57p98yvw58hjymki7xnvrfz9fidkqva0wm1x"; depends=[dplyr]; }; TNC = derive2 { name="TNC"; version="0.1.0"; sha256="0639wvylmk9mapvmz79ij65g1phv3ylc683awi4pgaf9yfwlmjkn"; depends=[]; }; + TNRS = derive2 { name="TNRS"; version="0.3.0"; sha256="0r4pd8r7whd9hd47isy3hxzkv9ar3i5hqhixaxr691ck1szkj1f2"; depends=[httr jsonlite]; }; TOC = derive2 { name="TOC"; version="0.0-5"; sha256="0zk6j1yc4gpvkswnfrlyfvqc69wr4q3ys59y7v03fhzwasqj0an2"; depends=[bit raster rgdal]; }; TOHM = derive2 { name="TOHM"; version="1.4"; sha256="15i9hrvxlnwbs9vrsyrfhnm4xwmi97hss2da0xqs1xj5nmzwymqh"; depends=[EQL igraph Matrix nloptr Rmpfr]; }; TOSTER = derive2 { name="TOSTER"; version="0.4.0"; sha256="0zfalngjjg1p4516r60ma03d2ndw2w417p7bp3b9l4cyv5jy5qjv"; depends=[cowplot distributional ggdist ggplot2 jmv jmvcore R6 tidyr]; }; @@ -5350,7 +5350,7 @@ in with self; { TSMSN = derive2 { name="TSMSN"; version="0.0.1"; sha256="0zy9r6i1p161h1zh0vnz1npsh48q3nc2c5hcgzvf78nfznnn6wg1"; depends=[mvtnorm numDeriv progress sn]; }; TSMining = derive2 { name="TSMining"; version="1.0"; sha256="1n32acagffiw31pr485ly3phx33zw7vj009bvw4lbqpixa1pszj2"; depends=[foreach ggplot2 plyr reshape2]; }; TSMySQL = derive2 { name="TSMySQL"; version="2015.4-1"; sha256="1gdda7li320ba9qfxfl5c4cwl2ln5jdbvid98cryj175g0nbmx7b"; depends=[DBI RMySQL tframe TSdbi TSsql]; }; - TSP = derive2 { name="TSP"; version="1.1-11"; sha256="0gdwxbj2gria7jhsswmfvc32r43sdd63z3lyy21gbvmfcakvb8j9"; depends=[foreach]; }; + TSP = derive2 { name="TSP"; version="1.2-0"; sha256="022k0972kcxb0w6qhx09l9cif8fmpkpvwddvgxiy60bx343ywzia"; depends=[foreach]; }; TSPostgreSQL = derive2 { name="TSPostgreSQL"; version="2015.4-1"; sha256="11201zpbrva6gwc9hg8pynadrps6d8pb3syzba9nyjpv2ck6x3ry"; depends=[DBI RPostgreSQL tframe tframePlus TSdbi TSsql]; }; TSPred = derive2 { name="TSPred"; version="5.1"; sha256="14dzpm5i5iml9kb49rnw7kq1ga03l4c6m485b1p8p3ya0n6mivkl"; depends=[dplyr e1071 elmNNRcpp EMD forecast keras KFAS magrittr ModelMetrics MuMIn nnet plyr randomForest Rlibeemd RSNNS tfdatasets vars wavelets]; }; TSS_RESTREND = derive2 { name="TSS.RESTREND"; version="0.3.1"; sha256="1la1ff9ajcabdsz5f2761647304fpwp779gv0gjds4mg25rf6n2f"; depends=[bfast broom ggplot2 mblm RcppRoll strucchange]; }; @@ -5358,7 +5358,7 @@ in with self; { TSSS = derive2 { name="TSSS"; version="1.3.1"; sha256="06wnbj741yyi5b483zhbaccvqpbg8lh3z9vnrxy64x28hnn79cly"; depends=[]; }; TSTr = derive2 { name="TSTr"; version="1.2"; sha256="0nljkqsrwzg7i82arpfrz2k9m1k1akin1akf01c5cadxq4rgarsf"; depends=[data_table stringdist stringr]; }; TSTutorial = derive2 { name="TSTutorial"; version="1.2.3"; sha256="0hpk6k3lc72p8pdz5aad04lcjsz9k443h5gs09dc3i10wqw3yhxs"; depends=[MASS]; }; - TSVC = derive2 { name="TSVC"; version="1.2.1"; sha256="11qivqrss54mzgkma0bkjrpiks5rxc43bmygp6i4chka45k8xiq3"; depends=[mgcv plotrix]; }; + TSVC = derive2 { name="TSVC"; version="1.2.2"; sha256="0c2dwsb17al6vfgk38xlbzww08xa1i2lji1bhzc3zlp7nb4mkxy8"; depends=[mgcv plotrix]; }; TSclust = derive2 { name="TSclust"; version="1.3.1"; sha256="1pj984sf7z0bakr55jqcrxr4mh4gihdv197m2k05phpp5hsplsjh"; depends=[cluster dtw forecast KernSmooth locpol longitudinalData pdc]; }; TScompare = derive2 { name="TScompare"; version="2015.4-1"; sha256="0jmxnrbsdg368f29bp70rc9i88si5zjblbcn8rcjyn2k9vpd3q2f"; depends=[DBI tfplot tframe TSdbi]; }; TSdata = derive2 { name="TSdata"; version="2016.8-1"; sha256="199dy4phc6z0kzbp4kks55519c3xgsx4dkwrypr9sg8xhprrwnib"; depends=[]; }; @@ -5399,7 +5399,7 @@ in with self; { TauStar = derive2 { name="TauStar"; version="1.1.4"; sha256="06bb6570mqzfbjw2qp4bjl4a1bdpwsvcr0vw2y4l1x444m670ds1"; depends=[Rcpp RcppArmadillo]; }; TaxicabCA = derive2 { name="TaxicabCA"; version="0.1.1"; sha256="0izjf6vrdjvs9axvafr2mamr157i8w6d7m5sfjch1p5c174cpr9c"; depends=[]; }; Taxonstand = derive2 { name="Taxonstand"; version="2.4"; sha256="0zph4618bwjfvx41ap9d2534kknbni216y90nmcvaniskw4ixm7d"; depends=[pbapply]; }; - TcGSA = derive2 { name="TcGSA"; version="0.12.7"; sha256="0l28sldpavyvhm9hab9gb7i7rmlxpj7ivffi6xx8lg7qjn6d21v5"; depends=[cluster cowplot ggplot2 GSA gtools lme4 multtest reshape2 stringr]; }; + TcGSA = derive2 { name="TcGSA"; version="0.12.10"; sha256="1bdffzq3zwvr0qsp71mp0fqf9dgx9n3f08c53adwavycwr6zg1l7"; depends=[cluster cowplot ggplot2 GSA gtools lme4 multtest reshape2 stringr]; }; Tcomp = derive2 { name="Tcomp"; version="1.0.1"; sha256="1k0gsf3yr5n9zc2yi6szxm6s7bf61lz4fx8m3v48jlp5w900prwb"; depends=[forecast Mcomp]; }; TeXCheckR = derive2 { name="TeXCheckR"; version="0.7.0"; sha256="0r85yhk3p4ibkzkbjm7j9zpryp1dhajbmaqyfwr4bv1zh29smrxa"; depends=[clisymbols crayon data_table fastmatch hunspell hutils magrittr rstudioapi zoo]; }; TeachHist = derive2 { name="TeachHist"; version="0.1.2"; sha256="0s1bmg0ff0b045r99xxy47ydwda55mzsbnsc21g92qxvsh8hlcga"; depends=[dplyr ggplot2]; }; @@ -5409,6 +5409,7 @@ in with self; { Tejapi = derive2 { name="Tejapi"; version="1.0.1"; sha256="1v80yjbik6shqad2nvi374dpzs9bjv9ah26agy0khmwnbz6029rk"; depends=[httr jsonlite]; }; TempCont = derive2 { name="TempCont"; version="0.1.0"; sha256="1pl0czrpw74zfm5vycyl0h8hc3n5whf4g6a2759a22384gk5fq7k"; depends=[nlme]; }; Temporal = derive2 { name="Temporal"; version="0.3.0"; sha256="1f1gp7zqaa2phv9rik6nmlj4dcqlm7z9s6y5iify3v6vai9sky72"; depends=[dplyr expint numDeriv tidyr]; }; + TemporalGSSA = derive2 { name="TemporalGSSA"; version="1.0.0"; sha256="05jcixlakjzn2bkwxqpaypp1zyxfziaqdlb2830rjidamf3qrdr2"; depends=[]; }; Tendril = derive2 { name="Tendril"; version="2.0.4"; sha256="1wvczfklsccs8jd081vb6d6h7i35lhf6na925fm7wq8ars0b23wd"; depends=[dplyr ggplot2 magrittr plotly plyr reshape2 scales]; }; TensorClustering = derive2 { name="TensorClustering"; version="1.0.2"; sha256="094pk4v78d97sanrkirk0dyhy6w2i43imcw21q2r76w11d62w7k7"; depends=[abind combinat MASS mvtnorm pracma Rcpp rTensor tensr TRES]; }; TensorComplete = derive2 { name="TensorComplete"; version="0.1.0"; sha256="06lr0blkf5pv1zwlffn7m0xxscjii4jg930nkzrh2k7dnbka6vsx"; depends=[MASS pracma tensorregress]; }; @@ -5428,6 +5429,7 @@ in with self; { TextMiningGUI = derive2 { name="TextMiningGUI"; version="0.3"; sha256="0hl4rswc3icwf11idk9ydrbd3ghz6mb1vnabknal0fxffpdi37dd"; depends=[dplyr ggplot2 ggwordcloud RColorBrewer slam syuzhet tibble tidyr tidytext tm]; }; ThankYouStars = derive2 { name="ThankYouStars"; version="0.2.0"; sha256="0r77ns3102wj1wvrfsa06l427imxyfhigpbs36cdxl2j87qrjzl6"; depends=[httr jsonlite]; }; ThermIndex = derive2 { name="ThermIndex"; version="0.2.0"; sha256="0s9d55577dq61qixwwfwmqc2k2c8my00j2ng97ng42cw0jc7aylm"; depends=[]; }; + ThermalSampleR = derive2 { name="ThermalSampleR"; version="0.1.0"; sha256="1cl14scgczsc9xvvp5cjk548a48a7vmnc6dgsdhl8bqlkkrp1aly"; depends=[cowplot dplyr EnvStats ggplot2 janitor magrittr MASS purrr rlang sn tidyr]; }; Thermimage = derive2 { name="Thermimage"; version="4.1.3"; sha256="1623r64v97ii8qq6cfrg0jrdl7nwxswjgif5l85vak8xjkfwsq7q"; depends=[png tiff]; }; Thinknum = derive2 { name="Thinknum"; version="1.3.0"; sha256="0j48vgr4wsc2chm95aprq0xm0dk720xk5zmiijxasg92sfp0va6n"; depends=[RCurl RJSONIO]; }; ThreeArmedTrials = derive2 { name="ThreeArmedTrials"; version="1.0-3"; sha256="06jhgl1fzvkvnhrjs4xcyw6yymwl499rw9xnfwpx44dzxi7nynxj"; depends=[MASS numDeriv]; }; @@ -5444,8 +5446,8 @@ in with self; { TideTables = derive2 { name="TideTables"; version="0.0.3"; sha256="0xfwikz9f58pw1j5vp45wp44lbr8b8ijlac474nzahq46d411afp"; depends=[chron data_table]; }; Tides = derive2 { name="Tides"; version="2.1"; sha256="0da3z010ali83qf8mf1znicqv8vvsa5r93mc40ax60ln2w33nlrm"; depends=[]; }; TidyConsultant = derive2 { name="TidyConsultant"; version="0.1.0"; sha256="1ipv0nx0xmba62c7qjgadpjsr850d9dl0z5zjkh1rj6kfxdgiis2"; depends=[autostats badger framecleaner pacman presenter tidybins validata]; }; - TidyDensity = derive2 { name="TidyDensity"; version="0.0.1"; sha256="159931aa5m7g1w6g7wyka6fvxhfzlsrwi5iid4xz7ixpq68c3b3k"; depends=[dplyr ggplot2 healthyR_ai magrittr plotly purrr rlang stringr tidyr]; }; - TidyMultiqc = derive2 { name="TidyMultiqc"; version="1.0.0"; sha256="1dbkn6vgzkmp3vs528f1vf10hk4ph381z6bq8nshim5ggmvl4wvy"; depends=[assertthat dplyr jsonlite magrittr purrr rlang stringr tibble]; }; + TidyDensity = derive2 { name="TidyDensity"; version="1.0.0"; sha256="0wzl2jijzga2wc65hjk7v4nlifapc9cg8318jcwiaprndm5gd2cg"; depends=[actuar dplyr ggplot2 magrittr plotly purrr rlang stringr tidyr]; }; + TidyMultiqc = derive2 { name="TidyMultiqc"; version="1.0.2"; sha256="0acgq3npl7l2j3wv9gxlnkajb7sjacnsaxh3p4jrcqvam173bkps"; depends=[assertthat dplyr jsonlite magrittr purrr rlang stringr tibble]; }; TileManager = derive2 { name="TileManager"; version="0.4.1"; sha256="0pcskdqxxm07j47bw1j4d3jqf64pk0jqwcp5379hnpi6kr7f5gvh"; depends=[APfun raster rgeos sp XML]; }; TimeProjection = derive2 { name="TimeProjection"; version="0.2.0"; sha256="04yr4cg2khkw9n3y3qk0ni1327k4pxm09zz2xg8mpjdvgi4p9yi3"; depends=[lubridate Matrix timeDate]; }; TimeSeries_OBeu = derive2 { name="TimeSeries.OBeu"; version="1.2.4"; sha256="0ihigrbdkfbqqjxqfx3y5q8ii8n60301s7190jr50a88l1xzgmh8"; depends=[forecast jsonlite locfit trend tseries]; }; @@ -5454,7 +5456,7 @@ in with self; { Tinflex = derive2 { name="Tinflex"; version="1.8"; sha256="053w4l5j499brlbbh1bc41nj01j1533ixd9vggmvpkzk7zgdsasy"; depends=[]; }; TipDatingBeast = derive2 { name="TipDatingBeast"; version="1.1-0"; sha256="07lw6jnr76qrxwrwv90hi5ih2xf6g4sz4hfapk5vf1y3ayfskkl0"; depends=[DescTools mclust TeachingDemos]; }; Tlasso = derive2 { name="Tlasso"; version="1.0.2"; sha256="1svjl2va3vpa1m13wmyy3bpx76xxivalwprzbaavwxf8lgk34wgr"; depends=[expm huge igraph rTensor]; }; - TmCalculator = derive2 { name="TmCalculator"; version="1.0.2"; sha256="10simpmvf3gb20vp6k3gzn0qy9989yg9zddz2xns7ab4fhksgf40"; depends=[]; }; + TmCalculator = derive2 { name="TmCalculator"; version="1.0.3"; sha256="1zrsndpdl9bcl1w6szz8rdzadk7jsbd14fajnndliz9fra1ra7xg"; depends=[]; }; Tmisc = derive2 { name="Tmisc"; version="1.0.0"; sha256="1zs7zxawl13pils9hff0i5aplxy32ccp27jcmjdh39lgf083s3v3"; depends=[dplyr magrittr rstudioapi tibble]; }; TooManyCellsR = derive2 { name="TooManyCellsR"; version="0.1.1.0"; sha256="0cypjf4a9q2kw4gwxlr59nbwn25wrrhrcmpksxi2yhd3qhk71q8n"; depends=[cowplot ggplot2 imager jsonlite Matrix]; }; ToolsForCoDa = derive2 { name="ToolsForCoDa"; version="1.0.6"; sha256="1c37xv8h4jycnn9cnxlvby3p8hl3gfp4bdsbxm06bb323qj774pd"; depends=[calibrate HardyWeinberg MASS]; }; @@ -5499,6 +5501,7 @@ in with self; { TropFishR = derive2 { name="TropFishR"; version="1.6.3"; sha256="0nkw7dcb2kvgvvfla6ns60n460wsamwcp88281q6lyb6yb8k14bv"; depends=[doParallel GA GenSA MASS Matrix msm reshape2]; }; TrtCombo_FactorialExp_SR = derive2 { name="TrtCombo.FactorialExp.SR"; version="4.0.4"; sha256="1kc5nqivsia801hdll5zcl4w6ayx7pabx7xz70l75h1f966ahnr7"; depends=[]; }; TrueSkillThroughTime = derive2 { name="TrueSkillThroughTime"; version="0.1.0"; sha256="1ak7w10qss1jlf8gy4sri678nqcw6rc79kwr6anqcjxick1000j9"; depends=[hash]; }; + TruncExpFam = derive2 { name="TruncExpFam"; version="1.0.0"; sha256="0059afyfvzliwpw4l1846yxcpqqdy9c2kk0xa0fl5nxh89c2hr7v"; depends=[invgamma rmutil]; }; TruncatedNormal = derive2 { name="TruncatedNormal"; version="2.2.2"; sha256="05cfn7mdq0hgw97bbb227in9ccjz727sp67xpnpx2r1ajvl6gxdf"; depends=[alabama nleqslv randtoolbox Rcpp RcppArmadillo]; }; Tsphere = derive2 { name="Tsphere"; version="1.0"; sha256="0xgxw2hfj40k5s0b54dcmz7savl8wy4midmmgc7lq4pyb8vd58xx"; depends=[glasso rms]; }; TukeyC = derive2 { name="TukeyC"; version="1.3-4"; sha256="1ly09pll86zkn6m8rc6d66f3d7hf98fiij0psaigq6wdgf5an8ig"; depends=[doBy xtable]; }; @@ -5509,6 +5512,7 @@ in with self; { TwitterAutomatedTrading = derive2 { name="TwitterAutomatedTrading"; version="0.1.0"; sha256="1aa6fxxvy0s8al30w19wa2pwzp60zbbdvp5myigv8x26k6w2jwgv"; depends=[curl dplyr jsonlite lubridate magrittr naptime plyr purrr tibble tidytext twitteR]; }; TwoArmSurvSim = derive2 { name="TwoArmSurvSim"; version="0.2"; sha256="0isb1nmm6hxwn6p52an1axj30ilkr5c8xi86zx2b8acivdz2xr12"; depends=[blockrand dplyr simsurv survival]; }; TwoCop = derive2 { name="TwoCop"; version="1.0"; sha256="1ycxq8vbp68z82r2dfg2wkc9zk3bn33d94xay20g2p55lnzl2ifd"; depends=[]; }; + TwoPhaseInd = derive2 { name="TwoPhaseInd"; version="1.1.2"; sha256="1ifdj17rlr8nd0pqpcqi6835ymdhngif279i27s6lvwha924l81c"; depends=[survival]; }; TwoRegression = derive2 { name="TwoRegression"; version="0.1.2"; sha256="0qr9zrfmbh4c4207gvwa384q5njjx6nsl6lc58d25m8bkfalifpi"; depends=[data_table dplyr magrittr seewave]; }; TwoSampleTest_HD = derive2 { name="TwoSampleTest.HD"; version="1.0"; sha256="0xdib7hwbpy549pxihai8dpy91h94wwl3b76jn7p0m15ky7z18df"; depends=[]; }; TwoStepCLogit = derive2 { name="TwoStepCLogit"; version="1.2.5"; sha256="050y7na91izg36gkwd8yn8rx3r39dk6qlvhd3137f3jnk4v00bck"; depends=[survival]; }; @@ -5524,7 +5528,6 @@ in with self; { UKgrid = derive2 { name="UKgrid"; version="0.1.3"; sha256="1x44iry2j5qbvd8ac9rv9dmg60hbhry2v4jj9hmm49bx10iwl9h2"; depends=[data_table dplyr lubridate magrittr tsibble xts zoo]; }; UMR = derive2 { name="UMR"; version="1.1.0"; sha256="05g2gk7bmhzyill6fgq396yk0yi7qz4mdcy3cfzzx5nyr11rc8a7"; depends=[decon distr trust]; }; UNCLES = derive2 { name="UNCLES"; version="2.0"; sha256="0c61sm09dh0yfrjrjjnizg7qrf8xgc1zdldwhjh64kq8k8g5wa69"; depends=[class kohonen pdist]; }; - UNF = derive2 { name="UNF"; version="2.0.7"; sha256="1i7aj9w90c1bn581l820iasxhs4ibs7xwbhid7gdkz9f87cz568r"; depends=[base64enc digest]; }; UNPaC = derive2 { name="UNPaC"; version="1.1.0"; sha256="12w6vjvkzivnqa6jd75dwr8h8d8xbc2519pqnqw9fk3yanqzx9rk"; depends=[huge PDSCE]; }; UPCM = derive2 { name="UPCM"; version="0.0-3"; sha256="1apah04qdgvxxf6q6xr53716pcrmds86sn8f7ykxj93ggg8k0bvl"; depends=[cubature ltm mvtnorm numDeriv Rcpp RcppArmadillo statmod]; }; UPG = derive2 { name="UPG"; version="0.2.2"; sha256="01w54qbbyiwlw1dymi5gmxd26vds1am7r32p3gpq2ybfghk9kxbw"; depends=[coda ggplot2 knitr matrixStats mnormt pgdraw Rcpp RcppArmadillo RcppProgress reshape2]; }; @@ -5581,8 +5584,8 @@ in with self; { VEwaningVariant = derive2 { name="VEwaningVariant"; version="1.2"; sha256="1zhyjyp3vdlpjvx7q3zdf4c8gdfpwphqhl6vzpfl12486nlxlv2q"; depends=[ggplot2 Rcpp RcppArmadillo survival]; }; VFP = derive2 { name="VFP"; version="1.4"; sha256="0p964fag5a0p23x6jgyc5bx4kp3ar9jdh88n4nybiv884sdfbk90"; depends=[gnm MASS VCA]; }; VFS = derive2 { name="VFS"; version="1.0.2"; sha256="1b8sl8id2gj4iqkpjzd3giybbix2jvskwsbw1kqj3zqr77hygxwg"; depends=[e1071 nleqslv]; }; - VGAM = derive2 { name="VGAM"; version="1.1-5"; sha256="1fx123h4x5awzshv0m4jqbbllrdjfpslb2i8gl9phm1y1wahn69h"; depends=[]; }; - VGAMdata = derive2 { name="VGAMdata"; version="1.1-5"; sha256="1n5g2ymcanf6msjix6y9lsff65iq4898zmd5blfj57d2vbp6ibsa"; depends=[VGAM]; }; + VGAM = derive2 { name="VGAM"; version="1.1-6"; sha256="05yl1lbpambwg3i3rqn6aanaym7c3s8g7hi0bph98iyxqnx62sj4"; depends=[]; }; + VGAMdata = derive2 { name="VGAMdata"; version="1.1-6"; sha256="14s8118k66yy0dljr364dbq1hrvjwmg69n3ls3dbmxfm1f9vrmnw"; depends=[VGAM]; }; VGAMextra = derive2 { name="VGAMextra"; version="0.0-5"; sha256="11s7s2dm2yf5s9qbwbyavz01l9fk86grp4mlhrh8hd6lfmxxxcxm"; depends=[VGAM]; }; VHDClassification = derive2 { name="VHDClassification"; version="0.3"; sha256="1ij4h3gzxb9mm9q743kc3sg2q609mnqz6mhlrbim1wcjji2b7bv4"; depends=[e1071 lattice]; }; VIC5 = derive2 { name="VIC5"; version="0.2.4"; sha256="1q4ayvq0adln9vv3r05gc2rmkd2pbzrsqd8dsgmindzwqbxsps36"; depends=[foreach lubridate Rcpp RcppArmadillo]; }; @@ -5635,11 +5638,11 @@ in with self; { WA = derive2 { name="WA"; version="1.0"; sha256="0i6hkajfalwpvxmmzfl7nhk4x6hhrf0xqpgny8b1gk1hw05yv03m"; depends=[]; }; WACS = derive2 { name="WACS"; version="1.1.0"; sha256="09fmdlpb99q9dw17lwp0bwpklgvgiqq7bfs9ryx5r54m0niklr9d"; depends=[mclust mnormt mvtnorm tmvtnorm]; }; WARN = derive2 { name="WARN"; version="1.2-4"; sha256="18gfk9vqcqarj7j5i240wqv2dclg3csng4mih5izj40xaaxaf6q5"; depends=[MASS]; }; - WASP = derive2 { name="WASP"; version="1.4.1"; sha256="1af2qqsq811bvcwns4i0kvy36xxi9pkdawwq2n75yd9dhpv5whav"; depends=[ggplot2 sp tidyr waveslim]; }; + WASP = derive2 { name="WASP"; version="1.4.2"; sha256="0gdz1vqd7mj9n683qz3ngmk844ba81g2fz1pi9fi2mly5lfp28n3"; depends=[ggplot2 sp tidyr waveslim]; }; WCE = derive2 { name="WCE"; version="1.0.2"; sha256="105pwpd9ikm0gwz4r12jl6cgs1riwsk9pn5qk9cn3msgwa0sdynx"; depends=[plyr survival]; }; WCM = derive2 { name="WCM"; version="0.2.2"; sha256="0w1m2vcxc64ksw3dm94wdigil2fpv3cvzyqmkhs2zrfjlgrdchcd"; depends=[pracma raster]; }; WCQ = derive2 { name="WCQ"; version="0.2"; sha256="1yhkr2iazd7lh9r68xz1lh32z6r1sdnmqrjshcrm4rbwai0j3lkr"; depends=[]; }; - WDI = derive2 { name="WDI"; version="2.7.5"; sha256="0ipka3mhm0jciq1fb3qsp1cl2k53vihwq2ja9xw2ps6rjply5rii"; depends=[RJSONIO]; }; + WDI = derive2 { name="WDI"; version="2.7.6"; sha256="1466mcxn04qbs71r121h5v5jl5bfsjja2cg932rxnf9s9s261vkp"; depends=[RJSONIO]; }; WEE = derive2 { name="WEE"; version="1.0"; sha256="0i3h67p72lr708mwdw3rbzr1lqqr8n2dxv7f0bwyqzxv41sx1iz3"; depends=[doParallel foreach quantreg]; }; WEGE = derive2 { name="WEGE"; version="0.1.0"; sha256="17g4cgx0ajgj7lgxzi467cjbmbc47skyarcm88vqjc3i1j55dw12"; depends=[raster sf sp]; }; WGCNA = derive2 { name="WGCNA"; version="1.70-3"; sha256="1m6b4a2xpb02c1ajndhk8qlqnhwxa7lkkwj6nzv3l618jy1kp15r"; depends=[AnnotationDbi doParallel dynamicTreeCut fastcluster foreach GO_db Hmisc impute matrixStats preprocessCore Rcpp survival]; }; @@ -5659,7 +5662,7 @@ in with self; { WRTDStidal = derive2 { name="WRTDStidal"; version="1.1.2"; sha256="1ssrqqf2hypif4nnfyl4lq03glyyg9ry9s14llf1njxamhjggfgg"; depends=[caret dplyr fields foreach forecast ggplot2 gridExtra lubridate purrr quantreg RColorBrewer survival tidyr]; }; WSGeometry = derive2 { name="WSGeometry"; version="1.2.1"; sha256="073cvvbhzx5nllrwfyz6bxvskmkm88i7wq93m2d0q60pzwzsxwzl"; depends=[expm imager lpSolve Matrix plot3D Rcpp RcppArmadillo RSpectra transport]; }; WVPlots = derive2 { name="WVPlots"; version="1.3.2"; sha256="07gwb984mmfwi9b7m44d60f787szw089xlvqwclpkpjgz677k1cg"; depends=[cdata ggplot2 gridExtra mgcv rqdatatable rquery sigr wrapr]; }; - WWGbook = derive2 { name="WWGbook"; version="1.0.1"; sha256="0q8lnd1fp4rmz715x0lf61py3xw8wg55yq3gvswaqwy68dlqrzjc"; depends=[]; }; + WWGbook = derive2 { name="WWGbook"; version="1.0.2"; sha256="05dzgb2b1md981882sp85dvmrsak5v7gwkww1shqfm34zmk9dbkn"; depends=[]; }; WWR = derive2 { name="WWR"; version="1.2.2"; sha256="0ia1dd12r1l08s9nhgvk55jmqwv58jawm25gd2ni6wpa3mcmq02g"; depends=[inline]; }; WaMaSim = derive2 { name="WaMaSim"; version="1.0.0"; sha256="0sa7qd2bpn3sp06mlpissxxkfhg7j1d07nnwlnz7nyg7pivwnpan"; depends=[magrittr]; }; Watersheds = derive2 { name="Watersheds"; version="1.1"; sha256="1gn52nl0rr29pqq94gjasc4fi1kjxlrpjdkgm2x56j5jbd162drk"; depends=[lattice maptools rgeos sp splancs]; }; @@ -5668,6 +5671,7 @@ in with self; { WaveletArima = derive2 { name="WaveletArima"; version="0.1.1"; sha256="19hz2q280m41qh3m9lx3i9p6p5fl6pw8r9b06xk6sn04hxbim8xx"; depends=[forecast fracdiff wavelets]; }; WaveletComp = derive2 { name="WaveletComp"; version="1.1"; sha256="07w2aa0jiflvxyqhgh48705hg8hjspd103jd00i2pcw2v42hwmf8"; depends=[]; }; WaveletGARCH = derive2 { name="WaveletGARCH"; version="0.1.1"; sha256="0dj5bmvzfhj1cpn8qi2ax3iipr7jlq0f9vk4b1idqgh5dmdi8lh6"; depends=[FinTS forecast fracdiff rugarch wavelets]; }; + WaveletRF = derive2 { name="WaveletRF"; version="0.1.0"; sha256="08czmifw1dz2arz9f4jk76vlwwnf24ha9pm3dfihqkxjcc16dkgz"; depends=[forecast fracdiff randomForest tsutils wavelets]; }; WaveletSVR = derive2 { name="WaveletSVR"; version="0.1.0"; sha256="05sqvqklbz7barf1jfrhd7n4mj60z57sqpikl3lykigl3m9ravhm"; depends=[e1071 forecast fracdiff tsutils wavelets]; }; WaverR = derive2 { name="WaverR"; version="1.0"; sha256="084fhzggzm075w6wp2lqd3j0an21idhw8z5l8ynz4y96mpmn204a"; depends=[kimisc MASS]; }; Wcompo = derive2 { name="Wcompo"; version="1.0"; sha256="1rd7y86q8qi7w9878ng0zdk3zpxnjyzpmrm2mj5lm60hkd72xyrw"; depends=[survival]; }; @@ -5676,7 +5680,7 @@ in with self; { WebGestaltR = derive2 { name="WebGestaltR"; version="0.4.4"; sha256="1rgf9s80hk35baiknrwgnqnhxssrcxdansgpvpyhqv07bqd472nn"; depends=[apcluster doParallel doRNG dplyr foreach httr igraph jsonlite Rcpp readr rlang svglite whisker]; }; WebPower = derive2 { name="WebPower"; version="0.6"; sha256="1gw6191v9sgycis3vyjznaaiyhmp0j23h9k8g8adchpyss7017ab"; depends=[lavaan lme4 MASS PearsonDS]; }; WeibullFit = derive2 { name="WeibullFit"; version="0.1.0"; sha256="1a80gcqbmvb1rz2dr2syy16wn6ixjn6l40gayys9zy8302hky9ir"; depends=[e1071 FAdist glue kSamples mixdist optimx R_methodsS3 R_oo sqldf xtable]; }; - WeibullR = derive2 { name="WeibullR"; version="1.1"; sha256="09b8rjc1k80d6k01vppayswmkdiqmvfqfsw812b5000kk1zng2sm"; depends=[Rcpp RcppArmadillo]; }; + WeibullR = derive2 { name="WeibullR"; version="1.1.5"; sha256="1dkvdja7zm1v7z9011qms9k84wqywbl7k64jlfrp6fn2k0y6nxgj"; depends=[Rcpp RcppArmadillo]; }; WeightIt = derive2 { name="WeightIt"; version="0.12.0"; sha256="1x71ifvxl1zn1iaapfz8sscag2h4yim3ycqiink02sy3sfl0hj4n"; depends=[backports cobalt crayon ggplot2]; }; WeightSVM = derive2 { name="WeightSVM"; version="1.7-9"; sha256="0467rj0qvlyzzpjdxbwwa8gzyalifvjza4pvakbrl7b332v36dwq"; depends=[]; }; Weighted_Desc_Stat = derive2 { name="Weighted.Desc.Stat"; version="1.0"; sha256="030i12mnwlj976avvk3grrccgprsckmc35dm2ajwdfc9dijhypnj"; depends=[]; }; @@ -5701,7 +5705,7 @@ in with self; { WordR = derive2 { name="WordR"; version="0.3.2"; sha256="1bng0rhhhnryhjw9xpd38v7sdcw9cgqrdryh5bfwk26wjk8jjdms"; depends=[dplyr flextable officer xml2]; }; WorldFlora = derive2 { name="WorldFlora"; version="1.10"; sha256="0wh5jmzfy1fja6iw4vd8p9xir2kd3yh6y4plqs95dlhf1s84awyb"; depends=[]; }; WrightMap = derive2 { name="WrightMap"; version="1.2.3"; sha256="0i84xkd1agyp45r84zsk8vvc02ln8qhxvl4n72xjqib12b38kqzl"; depends=[]; }; - WriteXLS = derive2 { name="WriteXLS"; version="6.3.0"; sha256="0ssjdv7vr66sl1yfg0l38xddrvrfzhf7vdq342izc22bprx9h78b"; depends=[]; }; + WriteXLS = derive2 { name="WriteXLS"; version="6.4.0"; sha256="1dqr98kx930y6mcvb9b39xiwshhs250gkd2vw2v6iil34sl90jv4"; depends=[]; }; WtTopsis = derive2 { name="WtTopsis"; version="1.0"; sha256="0zwx75rgdyh7pjxjvd5xvxqkfryvhq2csn4sd0py0dgmjxb5p3ja"; depends=[]; }; WufooR = derive2 { name="WufooR"; version="1.0.1"; sha256="0iq1lc1b22zdvclkr4yivxxf8z5mdxik7lx9r3b38h2qy2rckqb2"; depends=[dplyr httr jsonlite]; }; XBRL = derive2 { name="XBRL"; version="0.99.19"; sha256="0l25lfy8vzkgdq7i4bafh8b1246f8p2a6sy7c4kswzz4bnxnrihc"; depends=[Rcpp]; }; @@ -5709,7 +5713,8 @@ in with self; { XICOR = derive2 { name="XICOR"; version="0.3.3"; sha256="0xhb58bk3r8spd8ah3r7568np27nlrc18cswcsgavaikjpfda9vr"; depends=[psychTools]; }; XKCDdata = derive2 { name="XKCDdata"; version="0.1.0"; sha256="1lx9frlbc549qrh4d3m79r3l9icfzqkgfgp8raa8x46a2havi0a5"; depends=[assertthat dplyr glue htmltools httr jsonlite magrittr tibble]; }; XLConnect = derive2 { name="XLConnect"; version="1.0.5"; sha256="1b8nr8mjxi8bq4b2c191n4gpjq1fx2vqblp5kb3zmk18gzsjwp4p"; depends=[rJava]; }; - XML = derive2 { name="XML"; version="3.99-0.8"; sha256="0l3bsgqw4bicv3sl2bfag7p4rh1y2pcyg0ajr73kkbg85qf6j7q8"; depends=[]; }; + XLS = derive2 { name="XLS"; version="0.0.9"; sha256="0c9x1rlh7q0x1m57dg4knbvdhqg3mffnwcd50yr29a4h6dy7jjf9"; depends=[mpoly rlang]; }; + XML = derive2 { name="XML"; version="3.99-0.9"; sha256="02ba407ddgil4jbjzrbw756hlxzy3mihc5dk1ngcbvsp67gxw5cw"; depends=[]; }; XML2R = derive2 { name="XML2R"; version="0.0.6"; sha256="0azfh950r2b7ck3n1vzk3mdll7zy844nx3mbk676jxnj8gg7nxk5"; depends=[plyr RCurl XML]; }; XNomial = derive2 { name="XNomial"; version="1.0.4"; sha256="1mwx302576rmsjllbq2clfxilm3hkyp5bw0wmwqbn0kgv5wpy8z6"; depends=[]; }; XR = derive2 { name="XR"; version="0.7.2"; sha256="0j8rkjw9y7mb0yj24nlisfd84148pnnakz8i2y35y2b8gmh5zhvz"; depends=[jsonlite]; }; @@ -5745,6 +5750,7 @@ in with self; { aCRM = derive2 { name="aCRM"; version="0.1.1"; sha256="0kzp568hd9c9a9qgniia5s5gv0q5f89xfvvwpzb197gqhs3x092v"; depends=[ada dummies kernelFactory randomForest]; }; aGE = derive2 { name="aGE"; version="0.0.9"; sha256="17niwni6sd2mdvhskq6vfwplynh67hwq9ijrlgjvhkcslpb2ilp3"; depends=[MASS nlme survey]; }; aLFQ = derive2 { name="aLFQ"; version="1.3.6"; sha256="0kphpvhz36859f5l0k8mbf59g9871mynbs4ybdi0h5nm2cdjy9vx"; depends=[bio3d caret data_table lattice plyr randomForest reshape2 ROCR seqinr]; }; + aMNLFA = derive2 { name="aMNLFA"; version="1.1.2"; sha256="1bks7g6zc8817gr4j1mxzmyhw23mwafb6816a26vylk8d9k9d315"; depends=[devtools dplyr ggplot2 gridExtra MplusAutomation plyr reshape2 stringi stringr]; }; aPCoA = derive2 { name="aPCoA"; version="1.3"; sha256="0ybp7jd1q0md4wbal5cmcl6hg3c1wkdz5mi1w5qddgi472vv1z83"; depends=[ape car cluster randomcoloR vegan]; }; aRchi = derive2 { name="aRchi"; version="1.0.5"; sha256="1sn321d2qh7vvwfbr62lg3c5ggg8df0w0q6mwcg5pr3jqhiif076"; depends=[circular data_table DiceKriging dplyr FNN gtools lidR pkgcond plyr progress rgl stringr]; }; aRpsDCA = derive2 { name="aRpsDCA"; version="1.1.1"; sha256="0ghg43rd6bnv4jp8pkpd1ixp5l6kq5pr0mxq61q24s24g0m3s64p"; depends=[]; }; @@ -5761,7 +5767,7 @@ in with self; { abc = derive2 { name="abc"; version="2.1"; sha256="0ngzaaz2y2s03fhngvwipmy4kq38xrmyddaz6a6l858rxvadrlhb"; depends=[abc_data locfit MASS nnet quantreg]; }; abc_data = derive2 { name="abc.data"; version="1.0"; sha256="1bv1n68ah714ws58cf285n2s2v5vn7382lfjca4jxph57lyg8hmj"; depends=[]; }; abcADM = derive2 { name="abcADM"; version="1.0"; sha256="0vcabnnnwc0psv9v3rda5aap9s8cq1pjh02zva3ki64hlavf2a10"; depends=[BH Rcpp]; }; - abcdeFBA = derive2 { name="abcdeFBA"; version="0.4"; sha256="1rxjripy8v6bxi25vdfjnbk24zkmf752qbl73cin6nvnqflwxkx4"; depends=[corrplot lattice rgl Rglpk]; }; + abclass = derive2 { name="abclass"; version="0.1.0"; sha256="1942a0sws4y6hj9z95rn5vdy9qw9xcdqhdb2pjpk7r6g0vckap07"; depends=[Rcpp RcppArmadillo]; }; abcrf = derive2 { name="abcrf"; version="1.8.1"; sha256="1ghbd24yhqy3xhdxas6ccn84nkavqpgldx5ck8kijknc7qjm8k27"; depends=[doParallel foreach MASS matrixStats ranger Rcpp RcppArmadillo readr stringr]; }; abcrlda = derive2 { name="abcrlda"; version="1.0.3"; sha256="04pcdnk2szfpc2ylcw5ds7y895ivy03bycal03kxw7cwylzxasks"; depends=[]; }; abctools = derive2 { name="abctools"; version="1.1.3"; sha256="07s9dg10i8lsxl73b4n2hynca2fjgb0ykb0dz8c3zv6cgw3cyx97"; depends=[abc abind Hmisc plyr]; }; @@ -5780,7 +5786,7 @@ in with self; { abstractr = derive2 { name="abstractr"; version="0.1.0"; sha256="1ymwp7syrynwd4i8aj2x5n8jdi9d96fjzl6jb09n0bnr5fgl7vig"; depends=[colourpicker emojifont ggplot2 gridExtra rintrojs shiny shinythemes]; }; abtest = derive2 { name="abtest"; version="1.0.1"; sha256="0jz2ry5364p8h8xlk5a5sycn8xlpxd1iasfg99bcr4jqzd92jfqg"; depends=[Matrix mvtnorm plotrix qgam RColorBrewer Rcpp sn truncnorm]; }; abundant = derive2 { name="abundant"; version="1.2"; sha256="15m3ngj5aipjg961yy5kvdg9xlfcpliw30dq6gchzxabhnfzcipd"; depends=[glasso]; }; - academictwitteR = derive2 { name="academictwitteR"; version="0.3.0"; sha256="07fmkrh90ji04qkcad6f3xk4ndin38w1w5ywygv588in1psqfjci"; depends=[dplyr httr jsonlite lubridate magrittr purrr rlang tibble tidyr tidyselect usethis]; }; + academictwitteR = derive2 { name="academictwitteR"; version="0.3.1"; sha256="055n0y8g2ibai5zyvw9cqbi0l1zi792cgf65jhy6mrf7j6lgrzhw"; depends=[dplyr httr jsonlite lubridate magrittr purrr rlang tibble tidyr tidyselect usethis]; }; acc = derive2 { name="acc"; version="1.3.3"; sha256="1ii2vm47djxbixa75h690q1s2f9m9x6i8nkygik93j6dayr6kr1m"; depends=[circlize DBI ggplot2 iterators mhsmm nleqslv PhysicalActivity plyr R_utils Rcpp RcppArmadillo RSQLite zoo]; }; accSDA = derive2 { name="accSDA"; version="1.0.0"; sha256="0sgxy5y8kkc1n35657kifwfjsba7y5m1vbr7rkk5lmbpkzahqm61"; depends=[ggplot2 ggthemes gridExtra MASS rARPACK sparseLDA]; }; acca = derive2 { name="acca"; version="0.2"; sha256="0h9dyzd1pbr4rvxqz69vlfmbibcd1n72qqgjvci7fdjjvfq2mc9p"; depends=[ggplot2 plyr]; }; @@ -5818,14 +5824,16 @@ in with self; { actuaryr = derive2 { name="actuaryr"; version="1.1.1"; sha256="08dzn565ax2l2hrn2m32k6magjbskybywl0hsgkg11nrjvkznwnx"; depends=[crayon dplyr lubridate magrittr purrr tibble]; }; acumos = derive2 { name="acumos"; version="0.4-4"; sha256="15i4xbcdk5vxjrgac32zh4439v0vmabnw3jvsmxiipap5frp7rpi"; depends=[httr jsonlite RestRserve RProtoBuf Rserve yaml]; }; ada = derive2 { name="ada"; version="2.0-5"; sha256="1h3a07czp0w3hrhjcg1fz721y8vsfclzqi3rq8qfzgpfb4h1f06r"; depends=[rpart]; }; + adaHuber = derive2 { name="adaHuber"; version="1.1"; sha256="0giypz04m9anssa2r3hlf95lnj74i3ir48p5j898i2z1gmf8m14w"; depends=[Rcpp RcppArmadillo]; }; adabag = derive2 { name="adabag"; version="4.2"; sha256="109wrl1pwvmyv2l909hrvk7dg4aa9pv449mvdycp50zwrsw9w0a7"; depends=[caret doParallel foreach rpart]; }; adagio = derive2 { name="adagio"; version="0.8.4"; sha256="0ihv05402iq003m0338f85pnqnlnrmx0pf1mg8cz9sgi5h98mbnl"; depends=[lpSolve]; }; adamethods = derive2 { name="adamethods"; version="1.2.1"; sha256="150awbd3skb1mqca18bqjykhyycqw8crviw66s6qrcnmcsbk77pj"; depends=[Anthropometry archetypes FNN foreach nnls tolerance univOutl]; }; + adana = derive2 { name="adana"; version="1.1.0"; sha256="0zi3a17rapc1z074k3yzgjv2b6ba6c9d54b1hm0ivvgfd335981f"; depends=[optimx ROI ROI_plugin_optimx]; }; adapt4pv = derive2 { name="adapt4pv"; version="0.2-1"; sha256="0kl7fh2nmc1kb0hxfxg6ml1a2ygi5b8zzfb4mv29qszlhsmpjldd"; depends=[doParallel foreach glmnet Matrix speedglm xgboost]; }; adaptDiag = derive2 { name="adaptDiag"; version="0.1.0"; sha256="02xpphdhvryc06yji89mn7m2djgkpy19ph4sd52rhfsma7xn6hyf"; depends=[doParallel extraDistr foreach pbmcapply]; }; adaptMCMC = derive2 { name="adaptMCMC"; version="1.4"; sha256="0yydliqhkz1y8lm4sb2biikbk8wmcyfqmamhm059843yk46nr6an"; depends=[coda Matrix ramcmc]; }; adaptMT = derive2 { name="adaptMT"; version="1.0.0"; sha256="1yllz1zd4cryf5bj8b2lcrj6zl79yjkllyh9p02ikryy5qmg419b"; depends=[]; }; - adaptTest = derive2 { name="adaptTest"; version="1.0"; sha256="08d7a5dlzhaj236jvaw3c91008l66vf5i4k5anhcs32a3j8yh2iv"; depends=[lattice]; }; + adaptTest = derive2 { name="adaptTest"; version="1.1"; sha256="1qfhb3c64a5pl23vk7z6a3h46yb69cvzp1bpxnpybhxs42s80l5q"; depends=[lattice]; }; adaptalint = derive2 { name="adaptalint"; version="0.2.4"; sha256="15qdcvnnbgcps8j5k79354wsc9alswijv8lcafg2i3lghaw536yf"; depends=[dplyr lintr purrr]; }; adaptiveGPCA = derive2 { name="adaptiveGPCA"; version="0.1.2"; sha256="0bb6hw77dfa66b12xyazlp992gwjb1plylixlmq4cv4yjhnl9n5z"; depends=[ape ggplot2 phyloseq shiny]; }; adaptivetau = derive2 { name="adaptivetau"; version="2.2-3"; sha256="1jficl4yidix35q8yqs3pcv813wq3pg4hpw4ah4dprvg95bl7wwx"; depends=[]; }; @@ -5844,7 +5852,7 @@ in with self; { addreg = derive2 { name="addreg"; version="3.0"; sha256="13bwmgxylwi02g60j1rr51cr5jvvkl2nvf2lnnhnq46fhvs2ma7s"; depends=[combinat glm2 turboEM]; }; ade4 = derive2 { name="ade4"; version="1.7-18"; sha256="09f5kh2mwygqpnvf53k0r54k0cvaafxm9x4nm819gwv05k2g9dpc"; depends=[MASS pixmap sp]; }; ade4TkGUI = derive2 { name="ade4TkGUI"; version="0.3-1"; sha256="1y0f62n8iv002ayd1nyl3bmszw558niwnfzjpvk0a7cbvfdyvwcg"; depends=[ade4 adegraphics lattice]; }; - adea = derive2 { name="adea"; version="1.2.1"; sha256="0crhv3kfxlmw0g5qb2rpq519bzd4w46lbhalqg2rfq324apxvmdj"; depends=[Benchmarking combinat knitr lpSolveAPI rmarkdown]; }; + adea = derive2 { name="adea"; version="1.3.1"; sha256="0jvxgqwfga4gsn5jcdklfq2qci3xyvmkdfjappjwf72swb2rkv0n"; depends=[Benchmarking combinat knitr lpSolveAPI rmarkdown]; }; adegenet = derive2 { name="adegenet"; version="2.1.5"; sha256="1wjp31634n6z6wglf4z3ydrhhn5jmpwwckmp3n2b0v5f3p2fivp4"; depends=[ade4 ape boot dplyr ggplot2 igraph MASS reshape2 seqinr shiny vegan]; }; adegraphics = derive2 { name="adegraphics"; version="1.0-16"; sha256="0fpch8mffac68b64gh8jah8k9zcg8pphi38i9ddw5qggmvlrr9bv"; depends=[ade4 KernSmooth lattice latticeExtra RColorBrewer sp]; }; adehabitatHR = derive2 { name="adehabitatHR"; version="0.4.19"; sha256="1zmsvv651l13pyc1f2jhmnzcv1a620mb7y3gmi7sdfh7jgms3g76"; depends=[ade4 adehabitatLT adehabitatMA deldir sp]; }; @@ -5866,18 +5874,21 @@ in with self; { adjustedcranlogs = derive2 { name="adjustedcranlogs"; version="0.1.0"; sha256="08apfvpqvnnalx230p4qf5ckrwm1sgzras4zfrysgym5d4map9ci"; depends=[cranlogs dplyr lubridate rvest xml2]; }; adklakedata = derive2 { name="adklakedata"; version="0.6.1"; sha256="1lzj3ib4bgfkq5lq12n47pwc52h7k35xbbwj6brwsgx1gd4fx3x6"; depends=[httr rappdirs]; }; adlift = derive2 { name="adlift"; version="1.4-1"; sha256="14q7fnhlqvxdhnfjhdhfmadz241srplbm069a7ybbsql21cphpf3"; depends=[EbayesThresh]; }; - admisc = derive2 { name="admisc"; version="0.23"; sha256="0md0sygwdglyw7ss0dw6h235n70vpf25npp1q5b5nmb4db0fq80c"; depends=[]; }; + admiral = derive2 { name="admiral"; version="0.6.3"; sha256="0b40v2y09ia8fhl70i261dmhl18vcn9dy5crr2hb44dnz3rb533c"; depends=[admiral_test assertthat dplyr hms lubridate magrittr purrr rlang stringr tidyr tidyselect]; }; + admiral_test = derive2 { name="admiral.test"; version="0.1.2"; sha256="0p5qv43cbyyxj2i6awkayrfk9rc07h55ck9xpknyd5nf9c08gd1y"; depends=[dplyr magrittr rlang]; }; + admisc = derive2 { name="admisc"; version="0.25"; sha256="0cf8dy0mi3ynm2ic8jp0qi1samyzashwlzz0l64izqqv2s4hpyzp"; depends=[]; }; admix = derive2 { name="admix"; version="0.3.2"; sha256="0si2avjqw6rmv2ndsj1ppmqkafnsjx06m2h4jxfrwf2kxfp2rrn1"; depends=[fdrtool Iso latex2exp MASS orthopolynom pracma Rcpp]; }; admixr = derive2 { name="admixr"; version="0.9.1"; sha256="0wszpzs53cbnha13g2ldpq6z5ndw2v2xgrzadqkjm3hsp6akv4bl"; depends=[dplyr magrittr readr rlang stringr tibble]; }; admmDensestSubmatrix = derive2 { name="admmDensestSubmatrix"; version="0.1.0"; sha256="1a5lfm10aj6wdjibdnmffn75zvy6x69w8nqcx2i23gxg6v0xlqcl"; depends=[Rdpack]; }; adnuts = derive2 { name="adnuts"; version="1.1.2"; sha256="0nkciv5sfj3bws6kpgrnaq4ziasibaz44w64mb86zmr8420nyc1q"; depends=[ellipse ggplot2 R2admb rlang rstan snowfall]; }; - adobeanalyticsr = derive2 { name="adobeanalyticsr"; version="0.2.1"; sha256="1bibaayvcgmcxyd9wnmbg86jj6rp0pyi6pjpb84kbqhq91q78z41"; depends=[assertthat dplyr ggplot2 glue httr jose jsonlite knitr lifecycle lubridate progress purrr purrrlyr R6 rlang scales stringr tibble tidyr vctrs]; }; + adobeanalyticsr = derive2 { name="adobeanalyticsr"; version="0.3.0"; sha256="1i5bc6lmsynfyhz7kr7zv2nx5ixlnkh6zl5grr2yh0n5g44m19nr"; depends=[assertthat dplyr ggplot2 glue httr jose jsonlite lifecycle lubridate memoise openssl progress purrr R6 rlang scales stringr tibble tidyr vctrs]; }; adoptr = derive2 { name="adoptr"; version="1.0.0"; sha256="08d2fsqh5vczfr9cc8l554p6f0x85g58i5zg5j2m0chlmcispfk2"; depends=[glue nloptr]; }; adpss = derive2 { name="adpss"; version="0.1.1"; sha256="0p2gyfc4rxmms8zdsq4hjsh1njfl2s736arq8aq1am2wh1w9k5ch"; depends=[Rcpp]; }; ads = derive2 { name="ads"; version="1.5-5"; sha256="1i6cv296i5di9irmch9wg6bpxg7s026axspq0mhcwrfyqnw8xnxs"; depends=[ade4 spatstat_geom]; }; adsDataHubR = derive2 { name="adsDataHubR"; version="0.1.1"; sha256="19csivbg3f0g2r11l7jrciqq2lhg50km7qv29xfs6ba5cf678hb9"; depends=[httr jsonlite lubridate]; }; advclust = derive2 { name="advclust"; version="0.4"; sha256="1g8a8q4zh6d4152jb66fh7wj7k6ks5k4kfcazzw70jdn10yi6b38"; depends=[clue ggplot2 knitr MASS reshape2]; }; adventr = derive2 { name="adventr"; version="0.1.8"; sha256="0nja1a2xhaimz1fg2bb838x9a37sswjqjc68mp59gbdwkfpdii37"; depends=[BayesFactor boot car dplyr effects effsize forcats GGally ggplot2 Hmisc learnr lm_beta nlme readr robust sandwich sjstats tidyr WRS2]; }; + adw = derive2 { name="adw"; version="0.1.0"; sha256="1s1w68d7xw3sff5lkvr9bnhhkjxpc2r5gqj2lw8mkw0fm48m9ky0"; depends=[geosphere magrittr rnaturalearth sf]; }; adwave = derive2 { name="adwave"; version="1.3"; sha256="11iy50ng0zxvwsvdsvx262j8zgqaai308lp5is47az7xzvk57mx7"; depends=[waveslim]; }; adwordsR = derive2 { name="adwordsR"; version="0.3.1"; sha256="1w5qg4psm8pj89f09pz7in8zkafaimik1n6hx29y55jpmbxbk2gn"; depends=[RCurl rjson]; }; afc = derive2 { name="afc"; version="1.4.0"; sha256="1iy1wa88kf6zi6x7lbd0jdir653cvzvdraliqpxbac413wwb5gwl"; depends=[]; }; @@ -5892,7 +5903,7 @@ in with self; { afthd = derive2 { name="afthd"; version="1.1.0"; sha256="0gg2cp3sj28f3pi5rqh737hna3imwarwas01jacm0m2h27587k7y"; depends=[glmnet photobiology R2jags rstpm2 survival]; }; agRee = derive2 { name="agRee"; version="0.5-3"; sha256="1wi8jn14kpsj5z49my6fz8j6zxysddxm8svw86cnzsmnbj6mzq7x"; depends=[coda lme4 miscF R2jags]; }; aggregation = derive2 { name="aggregation"; version="1.0.1"; sha256="0j9g604m2ccc7hcy02539yja9cf3xcbl25gvp838bp4x8w18my46"; depends=[]; }; - aghq = derive2 { name="aghq"; version="0.3.1"; sha256="1sl2w6avkrz3j1yhyzvg88l1yvf2mi6zbdjr3zdrzm2ccgkww725"; depends=[Matrix mvQuad numDeriv polynom rlang]; }; + aghq = derive2 { name="aghq"; version="0.4.0"; sha256="12zzadx0qfh5wg8092w777c9ymd1m6gq3gwmfp9pf9bn3s31vij3"; depends=[Matrix mvQuad numDeriv polynom rlang]; }; aglm = derive2 { name="aglm"; version="0.4.0"; sha256="0rcyrzfi3l1k53c9qs1gfrcflnhdnri9sq6py8s6fw4wcn55kf67"; depends=[assertthat glmnet mathjaxr]; }; agop = derive2 { name="agop"; version="0.2-3"; sha256="1z90a07wzn5z4cbafwpfh3l3v1bgq9g89qbdjm51f78zynnb27dk"; depends=[]; }; agriTutorial = derive2 { name="agriTutorial"; version="0.1.5"; sha256="0c0p0bqcrnx34q5brnvgq10wkzahvgyybaz2xfmcghbdvzahd2dx"; depends=[emmeans ggplot2 lattice lmerTest nlme pbkrtest]; }; @@ -5906,7 +5917,7 @@ in with self; { agsemisc = derive2 { name="agsemisc"; version="1.3-1"; sha256="1905q35jgjhghlawql43yh296kbpysp927x3hj750yshz5zayzyr"; depends=[lattice MASS]; }; agtboost = derive2 { name="agtboost"; version="0.9.3"; sha256="1z2ys4cn859vas3q1if50k46cryn7wwy1pjqbc8n9dhdn5zxn3sk"; depends=[Rcpp RcppEigen]; }; agvgd = derive2 { name="agvgd"; version="0.1.1"; sha256="015izbi0f208ff0b6n2h4vjkdvi7wjzx8qkcyh7c556ikhijaxk5"; depends=[crayon dplyr grantham magrittr purrr rlang seqinr stringr tibble tidyr vctrs]; }; - ahMLE = derive2 { name="ahMLE"; version="1.20"; sha256="1hxbl5hgflkbz18h2zjjpjvhpy4zwdiap1699ypj06s4a2a18nxj"; depends=[invGauss Matrix Rcpp RcppArmadillo survival]; }; + ahMLE = derive2 { name="ahMLE"; version="1.20.1"; sha256="1phfzl0kynrq1if12h736jdxrfqc3i4kd32hp7sy2k2z7hkj1dkm"; depends=[invGauss Matrix Rcpp RcppArmadillo survival]; }; ahaz = derive2 { name="ahaz"; version="1.14"; sha256="1z7w5rxd5cya7kxhgxqvn72k87y33ginxra9g7j9wrfs5jgx6kvx"; depends=[Matrix survival]; }; ahnr = derive2 { name="ahnr"; version="0.3.1"; sha256="1g8m3q108ricfyn4fjjaihpr93xz7fm2sfzg3i0fz1n1i703jwm8"; depends=[ggplot2 magrittr matrixcalc pdist pracma purrr visNetwork]; }; ahpsurvey = derive2 { name="ahpsurvey"; version="0.4.1"; sha256="1r7x4c318nzbx0ppm9272kfpz2bln1cafkv9irnj85nsdcravr33"; depends=[dplyr knitr magrittr randomNames Rdpack tidyr]; }; @@ -5918,9 +5929,10 @@ in with self; { aif360 = derive2 { name="aif360"; version="0.1.0"; sha256="0r9x9q8kc9alk1j3p0y23ispcbfac89q0c043vh8dw89q267plf8"; depends=[reticulate rstudioapi]; }; aimPlot = derive2 { name="aimPlot"; version="1.0.0"; sha256="1d52b7kccxba6j7n0gbd7pzs0p87zn32vv8gdf2f7lyr75qzgz7x"; depends=[ggplot2]; }; aimsir17 = derive2 { name="aimsir17"; version="0.0.2"; sha256="0v804maqaygqhw3y9wqap3h9vvjniqnnbsv1psjj500r2yscicxs"; depends=[tibble]; }; - airGR = derive2 { name="airGR"; version="1.6.12"; sha256="1jcnjrx7pgdj1mr1vrpm0cvmh243lpgwn1h3zsbk7rjwvapr3hji"; depends=[]; }; + airGR = derive2 { name="airGR"; version="1.7.0"; sha256="0miqkhapw3ch4wss8dkygf5j5rj9jwdm7xdb4c5jfdnxdbbsxwjs"; depends=[]; }; airGRdatassim = derive2 { name="airGRdatassim"; version="0.1.3"; sha256="05c108rcj4rlzrbabai95abxhyjsrrrsgvds4zamvyzpjl64f9ps"; depends=[airGR]; }; - airGRteaching = derive2 { name="airGRteaching"; version="0.2.12"; sha256="0l6isv18fj1ka5n97nfhn7pgmvn8xpb23ry7dw22rd7rb2p63bxa"; depends=[airGR dygraphs markdown plotrix shiny shinyjs xts]; }; + airGRiwrm = derive2 { name="airGRiwrm"; version="0.6.1"; sha256="1dr7xg8a6xfdihmf4x03wm268iz78lks15fx9hmpw6sp15xv5kdj"; depends=[airGR DiagrammeR dplyr]; }; + airGRteaching = derive2 { name="airGRteaching"; version="0.2.13"; sha256="1j95b1rz83f1x8gp6107rdk9g81j47yhgdlf8y17f0ffgrvwwfky"; depends=[airGR dygraphs markdown plotrix shiny shinyjs xts]; }; aire_zmvm = derive2 { name="aire.zmvm"; version="0.8.2"; sha256="0z9knqdl7ihx2vph154qi1lh4s6yvlcw6kwry8k47mhh3p7pynsd"; depends=[dplyr httr lubridate progress readr readxl rvest sp stringr tidyr xml2]; }; airportr = derive2 { name="airportr"; version="0.1.3"; sha256="1h8h0cdfqgxv8cf9hp82sx5n4a1z88qyyxicj7d2kmmybqqz2r5n"; depends=[dplyr]; }; airports = derive2 { name="airports"; version="0.1.0"; sha256="1ahfqqfcvr731hj0h7d00jd87h1adiryh42sv4mh318lk5rglm6f"; depends=[]; }; @@ -5936,13 +5948,12 @@ in with self; { akmedoids = derive2 { name="akmedoids"; version="1.3.0"; sha256="19d9fh1cygn04riwc7y7lzdncyxki9rzikf9f5m96vp0y687z2ka"; depends=[clusterCrit dplyr ggplot2 Hmisc kml signal]; }; alabama = derive2 { name="alabama"; version="2015.3-1"; sha256="0mlgk929gdismikwx4k2ndqq57nnqj7mlgvd3479b214hksgq036"; depends=[numDeriv]; }; alakazam = derive2 { name="alakazam"; version="1.2.0"; sha256="0lqvfamx9lqcg6ig70zzxan2zchab68g6qxa734d6dsdgyfkiwnm"; depends=[airr ape Biostrings dplyr GenomicAlignments ggplot2 igraph IRanges Matrix progress Rcpp readr rlang scales seqinr stringi tibble tidyr]; }; - albatross = derive2 { name="albatross"; version="0.3-2"; sha256="1rwaw7809lzdv89lfq9li8jdb7pbb0wjqyiidxl7pxg7d5nxj06h"; depends=[lattice Matrix multiway pracma]; }; + albatross = derive2 { name="albatross"; version="0.3-4"; sha256="0fnywnydzn7mmdnlb413px08k09y5ac2ib3p8jic77i09g1v554m"; depends=[CMLS lattice Matrix multiway pracma]; }; albopictus = derive2 { name="albopictus"; version="0.5"; sha256="0kw1agm9jqi9wl5zbx8bryngy751g3sih36rgbrx0m2170cy42d9"; depends=[]; }; ald = derive2 { name="ald"; version="1.3.1"; sha256="12nf9vakayw24clrg56fh9x85kg277iricbs8ymahkjqjnc1p3cz"; depends=[]; }; aldvmm = derive2 { name="aldvmm"; version="0.8.4"; sha256="1dnmm3driw8ybqd10zlsaink5zh5f0pj2qqxda7y34s9shz7yqh9"; depends=[checkmate numDeriv optimr]; }; alfr = derive2 { name="alfr"; version="1.2.1"; sha256="1ldq8gvgqjjabn86hdqb6hxch8x4hvr6djv5ly4mx039dipc8jxi"; depends=[httr jsonlite magrittr stringr]; }; alfred = derive2 { name="alfred"; version="0.2.0"; sha256="1y0s6vn0piq4wnlc6v143va0qkklm67aa653lwgq926nfnjxz6as"; depends=[curl dplyr httr jsonlite lubridate magrittr rlang tibble tidyr]; }; - algaeClassify = derive2 { name="algaeClassify"; version="1.2.0"; sha256="1sna5rij2ngpgqfz5cviqdbyr43xph8cbjc4vnm238n72zgg7cb6"; depends=[httr lubridate plyr RCurl rvest taxize XML xml2]; }; algo = derive2 { name="algo"; version="0.1.0"; sha256="1g18p8jyj9crkqm16y2im3r9xzqwa36javv4vi1wvsqkg31d81si"; depends=[glue htmltools jsonlite]; }; algorithmia = derive2 { name="algorithmia"; version="0.3.0"; sha256="1ccmcsyxncyv8k0fjvr5y44amygqi7qx2dy6rsy3a5pw281hllr4"; depends=[base64enc httr rjson]; }; aliases2entrez = derive2 { name="aliases2entrez"; version="0.1.2"; sha256="11myzwvmagnj35qrrxr35hklzv76c0c4h2zl64y3lzzn5rfii0n6"; depends=[AnnotationDbi doParallel foreach limma org_Hs_eg_db RCurl readr]; }; @@ -5950,38 +5961,40 @@ in with self; { allcontributors = derive2 { name="allcontributors"; version="0.0.2"; sha256="0b9qiwp6z33fgci7np4qhsb39rzmarajsj3pa98vkmdn71bw1bxf"; depends=[cli clipr ghql git2r httr jsonlite magrittr]; }; alleHap = derive2 { name="alleHap"; version="0.9.9"; sha256="1fqrw645s3f5363p7jl3dzy8xphxdr1v6wdsjmqcqwpgvjqfr2zz"; depends=[abind]; }; allelematch = derive2 { name="allelematch"; version="2.5.1"; sha256="00117cj01psax4rjvy2nja5r2ss9l8zzjicczh46kp401i1ghmwc"; depends=[dynamicTreeCut]; }; - allestimates = derive2 { name="allestimates"; version="0.2.1"; sha256="1znjzqansh2117xpnwpsw450z20q6rz91h2kg35ygssg5skk8z6q"; depends=[broom dplyr ggplot2 speedglm stringr survival tibble tidyr]; }; + allestimates = derive2 { name="allestimates"; version="0.2.2"; sha256="0g0j6q810665lfa3a9xwmv0hkgcp2a8g0xq0vfpvyykyqykgid3z"; depends=[broom dplyr ggplot2 speedglm stringr survival tibble tidyr]; }; alluvial = derive2 { name="alluvial"; version="0.1-2"; sha256="039frwrsxq1lb97s7vf2vbyyadimkigs628ymym06fxka53drdkp"; depends=[]; }; almanac = derive2 { name="almanac"; version="0.1.1"; sha256="0qsczk74ihy7ac5c4dzd6ax5gfmr56wfnjxg396qc2c3xykb7dd5"; depends=[glue lubridate magrittr R6 rlang V8 vctrs]; }; alookr = derive2 { name="alookr"; version="0.3.5"; sha256="04ivvr9x5glxsz5077z0ahw0x242dgxnch4i6ybmv59jp6gpf4hg"; depends=[caTools cli dlookr dplyr future ggmosaic ggplot2 glmnet MASS MLmetrics party purrr randomForest ranger rlang ROCR rpart tibble tidyr tidyselect unbalanced xgboost]; }; alpaca = derive2 { name="alpaca"; version="0.3.3"; sha256="1mpyy9wg2wvznkd9vgzaxyz87py9zmlrlrzrhqbmqiwqh5y99wnq"; depends=[data_table Formula MASS Rcpp RcppArmadillo]; }; alphaOutlier = derive2 { name="alphaOutlier"; version="1.2.0"; sha256="09yrbv7jsiymw5gzp8p92ki70v1fys2k75x4sb9s7wy3c58wn1cd"; depends=[nleqslv quantreg Rsolnp]; }; alphabetr = derive2 { name="alphabetr"; version="0.2.2"; sha256="1pmp6zwhgycb38y5jbvrbv2nza7gyjh508vy09ml483c2cysvc1r"; depends=[clue dplyr multicool Rcpp]; }; - alphahull = derive2 { name="alphahull"; version="2.2"; sha256="024d70z9pasyfp83zwgh7fkjky70l74pbzw1wvazzq75p9m91vzv"; depends=[ggplot2 R_utils sgeostat spatstat splancs tripack]; }; + alphahull = derive2 { name="alphahull"; version="2.3"; sha256="0vir69bgydkb3l47kn0fs8x6nkh6vgbhrjsfhf1gnzvwj66iig29"; depends=[ggplot2 R_utils sgeostat spatstat_geom spatstat_random splancs tripack]; }; alphashape3d = derive2 { name="alphashape3d"; version="1.3.1"; sha256="0d3rxvsb0yl900dlpr1v5w56z8ci9rbp5dlwx7l2laifyprsns2i"; depends=[geometry rgl]; }; alphastable = derive2 { name="alphastable"; version="0.2.1"; sha256="01gwrcxlj2jlb8axs5qmrsixk3a8b7044ypyjg6dpdcxfbcf5fvp"; depends=[mvtnorm nlme nnls stabledist]; }; alphavantager = derive2 { name="alphavantager"; version="0.1.2"; sha256="0c97p8njga4xffvsa0kj0s4y0agjr44y9bnjxs5phm1ldcqjs0yj"; depends=[dplyr glue httr jsonlite purrr readr stringr tibble tidyr timetk]; }; alr4 = derive2 { name="alr4"; version="1.0.6"; sha256="0v98yzi0fcjxq0ak0w05001h8m9nfa9l0ann9bqvz8bwcmb3jlr2"; depends=[car effects]; }; altR2 = derive2 { name="altR2"; version="1.0.0"; sha256="15nvbq3n76p2857ipyf3q6rs2mwjqsp9gr3rmzbjfm8lrj0faxsv"; depends=[gsl purrr]; }; altadata = derive2 { name="altadata"; version="0.1.1"; sha256="0wv8a0423k0gw5i0qgz5d3wqw22a9pk7r80fp33pn0mxq9b54zdv"; depends=[httr jsonlite]; }; - altair = derive2 { name="altair"; version="4.1.1"; sha256="0fdhv23clmfcajjdrph0m8psrh5wr2giwhydbcrap9mdgbr0rkbk"; depends=[assertthat htmlwidgets magrittr repr reticulate vegawidget]; }; + altair = derive2 { name="altair"; version="4.2.1"; sha256="1132q369yxrfix76xizw22rpbixqbfsf23c3p1m751h536hmx2f6"; depends=[assertthat htmlwidgets magrittr repr reticulate vegawidget]; }; altfuelr = derive2 { name="altfuelr"; version="0.1.0"; sha256="0k3f4wr9gbn5aig40xg817hrnz2lx8g4adyy18s59fs8dw03v87h"; depends=[dplyr httr jsonlite lubridate magrittr purrr stringr]; }; - altmeta = derive2 { name="altmeta"; version="3.3"; sha256="1xq12hnzxh7kgv2i36xprg4lkvqfmxwz3sq4a1jlq2d5g3narvcm"; depends=[coda lme4 Matrix metafor rjags]; }; - amanida = derive2 { name="amanida"; version="0.1.0"; sha256="1z6i76b1qljw4fdaa5bbv0jhim1hyn3ysvl9ls2rglg4qzbv5bdn"; depends=[dplyr ggplot2 ggrepel kableExtra knitr magrittr readr readxl rmarkdown tibble tidyr tidyverse]; }; + altmeta = derive2 { name="altmeta"; version="4.0"; sha256="17cyiydf4n5j64izj7jph2v43h4x9kfd5b0x6m0ik5ci2aw8xzr5"; depends=[coda lme4 Matrix metafor rjags]; }; + amanida = derive2 { name="amanida"; version="0.2.0"; sha256="164ln3dagmdcbqbgywhgxkq0nbnf83p8hw16bvkdhydhzg82s021"; depends=[dplyr ggplot2 ggrepel kableExtra knitr magrittr readr readxl rmarkdown tibble tidyr tidyverse webchem]; }; amanpg = derive2 { name="amanpg"; version="0.3.3"; sha256="0hmdc4kiaxa41hvva93dl48c1lbwih24pjpy569n0cg1zq16fc9x"; depends=[]; }; amap = derive2 { name="amap"; version="0.8-18"; sha256="0zpcb73w413na23f6giml9311jh0j0y766w2fh9i40d2h7bbvyvs"; depends=[]; }; amapGeocode = derive2 { name="amapGeocode"; version="0.6.0"; sha256="0j04hg2ks7578fiaymj295yll77xm6x5svmxx6m4n0djky8j10n1"; depends=[data_table furrr httr jsonlite magrittr sjmisc xml2]; }; ambhasGW = derive2 { name="ambhasGW"; version="0.0.2"; sha256="0v517i4whip45pk6bwlwval9pz367pcgzz62b2z22mrwgi6m6bck"; depends=[raster rgdal yaml]; }; ambient = derive2 { name="ambient"; version="1.0.0"; sha256="0b8nd8g0ydglql2cwi4wmlnv5kyid8q51vz0p08f9m5x73k3z2bd"; depends=[Rcpp rlang]; }; - ambiorix = derive2 { name="ambiorix"; version="1.0.2"; sha256="1yzrh5nqhcri9ik25fc969fvckkwxp0hnwhfbdk61lp2gx6ll93k"; depends=[assertthat cli fs glue here httpuv jsonlite log promises websocket]; }; + ambiorix = derive2 { name="ambiorix"; version="2.0.0"; sha256="106lcrg4pj6zniib5zm8bp2s94lhwr9nmx2lxv684vg145m4pia5"; depends=[assertthat cli fs glue httpuv jsonlite log promises websocket]; }; amelie = derive2 { name="amelie"; version="0.2.1"; sha256="0f4rfijskrw9nmyzbrbz6yfa9d0a5cxjw8n9c36hc6jvh377i7k7"; depends=[]; }; amen = derive2 { name="amen"; version="1.4.4"; sha256="00c4dw6s8yxagbgadvcpw4ima89aqjqgpm3460zi97xwq9404f1d"; depends=[]; }; + amerifluxr = derive2 { name="amerifluxr"; version="1.0.0"; sha256="099vv1axgp4jfi9ic4rqsdcv8a5dz1z0zdmdx8r8h474p3jdqm7c"; depends=[heatmaply httr jsonlite memoise RCurl readxl]; }; amerika = derive2 { name="amerika"; version="0.1.0"; sha256="1c0bi0wrc89d0zv0wzmdvka66mcikgi1w4gn1i22mvg5bivhzaqx"; depends=[]; }; aml = derive2 { name="aml"; version="0.1-1"; sha256="09xxlxp784wlb561apns3j8f2h9pfk497cy5pk8wr4hhqqv4d3al"; depends=[lars]; }; + ammiBayes = derive2 { name="ammiBayes"; version="1.0-0"; sha256="1j5zr1yk2qwba1j5kjc48f9jygi6zn6d33m13jarmczn8y6nxf22"; depends=[bayesplot coda distfree_cr Hmisc lattice latticeExtra movMF msm spam]; }; ammistability = derive2 { name="ammistability"; version="0.1.2"; sha256="0ak20y5iv1cg5y06srdlfk5qp5c463ky41l350shnqpq550azy11"; depends=[agricolae ggcorrplot ggplot2 mathjaxr Rdpack reshape2]; }; ampd = derive2 { name="ampd"; version="0.2"; sha256="0bi8qngd37n60ym516yjcahxc536vdwm60rq5ld32170hww69j7c"; depends=[]; }; ampir = derive2 { name="ampir"; version="1.1.0"; sha256="0nnsxrnq3m1frrjp3i8bhm67x6xnl0scyb67wxgm5x7b187svhfj"; depends=[caret kernlab Peptides Rcpp]; }; - amt = derive2 { name="amt"; version="0.1.6"; sha256="1jcv21n95xh7gl86fh9k1vjn9qxadcd4nf521fidwavih2lhwmfi"; depends=[checkmate circular ctmm dplyr fitdistrplus lubridate magrittr purrr raster Rcpp Rdpack rgeos rlang sf sp survival tibble tidyr]; }; + amt = derive2 { name="amt"; version="0.1.7"; sha256="04sjvb4zvalv22q90n50rdkkj002vr5shhpgxacaac7hy0pgpcyc"; depends=[checkmate circular ctmm dplyr fitdistrplus lubridate magrittr purrr raster Rcpp Rdpack rgeos rlang sf sp survival tibble tidyr]; }; anMC = derive2 { name="anMC"; version="0.2.2"; sha256="0ab215nrqn535g9ayqzvgdckhwcrij1mc1296pvlj3grn3f8rhws"; depends=[mvtnorm Rcpp RcppArmadillo]; }; anacor = derive2 { name="anacor"; version="1.1-3"; sha256="0mj8g9p4fla0ax9jvcq7kii4lrhj8g872p11nys06anva22qjp51"; depends=[car colorspace fda]; }; analogsea = derive2 { name="analogsea"; version="1.0.3"; sha256="1mf9baniria2vq5k5djm8jfj3lyr2p9q9idcy0ifcrmzyrmgwwi3"; depends=[httr jsonlite magrittr yaml]; }; @@ -5991,7 +6004,6 @@ in with self; { analyz = derive2 { name="analyz"; version="1.4"; sha256="0qdh1gld2dkl0krbhm2vcqg8dfs03dn51rclgsw02554s06dlgxw"; depends=[]; }; analyzer = derive2 { name="analyzer"; version="1.0.1"; sha256="1729dnghdca7dr4l5cxazg68ipkm63mvk2danwm3bva62sza29p6"; depends=[dplyr ggplot2 gridExtra]; }; anapuce = derive2 { name="anapuce"; version="2.3"; sha256="05k3ypy4dc8q4jv0by37k66pdwb1wmsd24i6nciris5knfdy9csg"; depends=[]; }; - anchors = derive2 { name="anchors"; version="3.0-8"; sha256="12gd2526y7s2a8i6b9xma2c3sc6zxnwzl6sn8b50hbxizwr8d34j"; depends=[MASS rgenoud]; }; andrews = derive2 { name="andrews"; version="1.0"; sha256="130i86qkdy1xpcf611jpzqgmd17iik7j7spdcfwzk48f31biyp8v"; depends=[]; }; andurinha = derive2 { name="andurinha"; version="0.0.2"; sha256="1cpz16zv3al6lmsqsb7dl5v6kml2a0hg084rbmwa4wsyk5ygl8bm"; depends=[cowplot ggplot2 plyr rlang signal tidyr]; }; anesrake = derive2 { name="anesrake"; version="0.80"; sha256="1p2g51w80jiadlf4asbnsw46asarzlzr5c1yfhdb31ymqxd7p76q"; depends=[Hmisc weights]; }; @@ -6013,7 +6025,7 @@ in with self; { anscombiser = derive2 { name="anscombiser"; version="1.0.0"; sha256="0jpmxgr5hfyv1hcjn4h1063ch3b3xlgqv983f4f9d2ajz5i5mdwv"; depends=[]; }; antaresEditObject = derive2 { name="antaresEditObject"; version="0.3.0"; sha256="04rdq3kbliac1iaxqflf3qhh58qgl9pxb2qh44wkknb91ga0845x"; depends=[antaresRead assertthat data_table doParallel pbapply whisker]; }; antaresProcessing = derive2 { name="antaresProcessing"; version="0.18.1"; sha256="1dlq850xqh9534ws88ma3vv5r79cbabn6r6a2jmicxx116s7wjrz"; depends=[antaresRead data_table]; }; - antaresRead = derive2 { name="antaresRead"; version="2.2.9"; sha256="1g91fm614q3v5i5v6smp70fipya9rlcdshqixcsjniqcwvpvb01c"; depends=[bit64 data_table doParallel httr jsonlite lubridate pbapply plyr shiny stringr]; }; + antaresRead = derive2 { name="antaresRead"; version="2.2.95"; sha256="0w6pzgrj4bgfz9n8g6fjy13gfp2pybav5k23jpmlp5wsnq8lmb7i"; depends=[bit64 data_table doParallel httr jsonlite lubridate pbapply plyr shiny stringr]; }; antaresViz = derive2 { name="antaresViz"; version="0.17"; sha256="18f398qvy88w9rlkd08h5gvk7vwh349cjxi4pa59s5fs4ihhmdd2"; depends=[antaresProcessing antaresRead assertthat data_table dygraphs geojsonio htmltools htmlwidgets leaflet leaflet_minicharts lubridate manipulateWidget plotly rAmCharts raster rgeos shiny sp spMaps webshot]; }; anthro = derive2 { name="anthro"; version="1.0.0"; sha256="169h2vhdd2kxh4228lx1ab3fipixvka4686ngx6h8g15li9828s9"; depends=[survey]; }; anthroplus = derive2 { name="anthroplus"; version="0.9.0"; sha256="1wnj2idgdnh2gdw34x40adijf2sxp3k72j45pqqxg4aqc1wrvvv1"; depends=[anthro]; }; @@ -6040,10 +6052,10 @@ in with self; { apcf = derive2 { name="apcf"; version="0.1.7"; sha256="071gax2w9b0l74vls59y6syg2swiagz5xkab1x2wmmxk16y49l1s"; depends=[Rcpp]; }; apcluster = derive2 { name="apcluster"; version="1.4.9"; sha256="0wnbb3kj9m7rfq63xr43jjf6n8jxm1r2wvvx6g0qkss0wvipbb1s"; depends=[Matrix Rcpp]; }; apdesign = derive2 { name="apdesign"; version="1.0.0"; sha256="041zyd7ih9nnj92jj9vb9ya1ij9lmj1dzx64q74vyiadw1ix5l66"; depends=[Matrix]; }; - ape = derive2 { name="ape"; version="5.6-1"; sha256="1xzpq3a4q5hmksc8nl530c9n31fdkj3nigqm1qhd3vkncl1iwh15"; depends=[lattice nlme Rcpp]; }; + ape = derive2 { name="ape"; version="5.6-2"; sha256="0mqjsh7maczd02iwa4fb896q3kgd9jnlilq7y1yz18ch0c54aqlv"; depends=[lattice nlme Rcpp]; }; apercu = derive2 { name="apercu"; version="0.2.4"; sha256="046gf4dzypl6mmq7xqkyrdasq9rsjxzsii7w4nxkbn4c40kh7bf7"; depends=[pls]; }; apex = derive2 { name="apex"; version="1.0.4"; sha256="1ddzbzpnc17yvbl5yfyp0widqlx48qwlh80xcmyzhv045s680rdk"; depends=[adegenet ape phangorn]; }; - apexcharter = derive2 { name="apexcharter"; version="0.3.0"; sha256="1ds2qil4jwvfbiv39agpiwq3r54pbi4963n6i25nzfkdclw3hbjl"; depends=[ggplot2 htmltools htmlwidgets jsonlite magrittr rlang shiny]; }; + apexcharter = derive2 { name="apexcharter"; version="0.3.1"; sha256="1kvlsnsvgiz3akcqpiyxin264qpjbz3m8g98jgfwyiqkjhqs441a"; depends=[ggplot2 htmltools htmlwidgets jsonlite magrittr rlang shiny]; }; aphid = derive2 { name="aphid"; version="1.3.3"; sha256="1jqpn7w5sgy4k49qd9ci6yj89s55gzwl5w5ldw793mzpg6if7lfn"; depends=[kmer openssl Rcpp]; }; aphylo = derive2 { name="aphylo"; version="0.2-1"; sha256="0kvxz5r1z63610k127ji7dangrq7pd0zfgf5yqsvn0v7j4c9c5v5"; depends=[ape coda fmcmc MASS Matrix Rcpp xml2]; }; apisensr = derive2 { name="apisensr"; version="0.3.0"; sha256="1mis266s4m0hp34m7b7p008dvw7780r8rypgbpk7h5hgd1w5d7m0"; depends=[config episensr ggplot2 ggraph glue golem htmltools igraph rhandsontable rmarkdown shiny shinyjs shinymaterial]; }; @@ -6061,26 +6073,25 @@ in with self; { aprean3 = derive2 { name="aprean3"; version="1.0.1"; sha256="17rnq02sncl6rzwyln10200s43b8z1s2j0kdi9kgcb6qr51v12rv"; depends=[]; }; aprof = derive2 { name="aprof"; version="0.4.1"; sha256="14qclp88j4ygd4vrxxpgy2s9939wcajjsqycdzpvn64ws29sdpvh"; depends=[testthat]; }; apsimx = derive2 { name="apsimx"; version="2.3.1"; sha256="1d1ipzf9ahdb3540zjcyzj4dwx5v8b73av790ahhbmc128vdmspj"; depends=[DBI jsonlite knitr RSQLite xml2]; }; - apsrtable = derive2 { name="apsrtable"; version="0.8-8"; sha256="1qmm89npjgqij0bh6p393wywl837lfsshp2mv9b5izh1sg2qfwvw"; depends=[]; }; apt = derive2 { name="apt"; version="3.0"; sha256="14njvpf6q34nffm3r9gqcszlabzbydsxqj0ln9nk4mv59izp8sqm"; depends=[car erer urca]; }; apyramid = derive2 { name="apyramid"; version="0.1.2"; sha256="0ws6dfd6v3p9rhpmf06786yl2gaw1h2n1d76a054iap8bvgyahzw"; depends=[dplyr forcats ggplot2 glue rlang scales tidyselect]; }; - aqp = derive2 { name="aqp"; version="1.40"; sha256="07xs6yk3mqlhipwbnwygc0hklm6pr8rc6lmyl5n24vm01zkfnzwp"; depends=[cluster data_table lattice plyr sp stringr]; }; - aquodom = derive2 { name="aquodom"; version="0.1.0"; sha256="1ww80pglvpyi84z6zi475y9clx2zyys0qy2g2579wmyqs4hc36p6"; depends=[cachem dplyr glue httr lubridate magrittr memoise openxlsx readr rlang stringr tibble]; }; + aqp = derive2 { name="aqp"; version="1.41"; sha256="1md0ah0i8ifcmqc7q38mgbdhpnxvjmiax9ic8w0bqayw6lh9vyi6"; depends=[cluster data_table lattice plyr sp stringr]; }; + aquodom = derive2 { name="aquodom"; version="0.1.1"; sha256="11w3qf1fwa5gqbiwfq23hrw8k009xbn8rwdb5fgckykyc49lhqbk"; depends=[cachem dplyr glue httr lubridate magrittr memoise openxlsx readr rlang stringr tibble]; }; ar_matrix = derive2 { name="ar.matrix"; version="0.1.0"; sha256="1d531hkl50szfa1q0zbp8dp1a9jli63kwvxjgc9n0ar279y47qdz"; depends=[MASS Matrix sp sparseMVN]; }; arabic2kansuji = derive2 { name="arabic2kansuji"; version="0.1.1"; sha256="0fb8qn9a7xyk2civs1s3cx61hxmkrj6pkwnfq7pbjdm2dh6xjfky"; depends=[purrr stringr]; }; arabicStemR = derive2 { name="arabicStemR"; version="1.2"; sha256="1vflynbi7aln7x2p4jg9gsvfrxn4v6qkb4wbrzxmj561lqy9fcay"; depends=[]; }; - arakno = derive2 { name="arakno"; version="1.1.1"; sha256="0l17h1xzd2nlq79n4g89cp6rmrk03vlnw01rja46cm1ckhyhw1by"; depends=[httr jsonlite rgbif rworldmap rworldxtra]; }; + arakno = derive2 { name="arakno"; version="1.2.0"; sha256="00byazqa95zjgm04ycky2lvw0i2dwp66nwb1k1vdf8s3cx9jv3hr"; depends=[httr jsonlite rgbif rworldmap rworldxtra]; }; arc = derive2 { name="arc"; version="1.3"; sha256="0isfa7d26jpj004lf4f06krbfa68zyzrh5431xa63k2dykvg8c5j"; depends=[arules discretization Matrix R_utils]; }; archdata = derive2 { name="archdata"; version="1.2-1"; sha256="1dahfl9xdnqiwzdrff98x23k1dl19sfdqnv7jlg1xzgvhj1fhk0d"; depends=[]; }; - archeofrag = derive2 { name="archeofrag"; version="0.7"; sha256="15bz2czjxiw0q46sbalfcqk3jacpf4zcaa8x8d6jvbsf4hib6i28"; depends=[igraph RBGL]; }; + archeofrag = derive2 { name="archeofrag"; version="0.8"; sha256="148fhivihph2sg1wmdzw6ls1i3z28phywp4nvl0dsr00y09vsh4k"; depends=[igraph RBGL]; }; archetyper = derive2 { name="archetyper"; version="0.1.0"; sha256="1d4vz7kj7n5j81fwfxvr47if8c7fdycci6n33wf8paac0v2paqli"; depends=[bannerCommenter config feather here knitr log4r ps readr rmarkdown skimr snakecase stringr testthat tidyverse]; }; archetypes = derive2 { name="archetypes"; version="2.2-0.1"; sha256="0ibxsr173ib77gjhid91m85s8gjii4mi2w3d52q5301igv20p7r0"; depends=[modeltools nnls]; }; archiDART = derive2 { name="archiDART"; version="3.4"; sha256="1wvjlg2rwy39czf3qqh9igk9rmk9i7pxa9yl5x9yqmsagwd1av3n"; depends=[geometry gtools sp XML]; }; archive = derive2 { name="archive"; version="1.1.4"; sha256="1bhw3k1fwvvvacgsz1qgzc513lsz3y62cnvnvgabl6aqpn6fs29n"; depends=[cli cpp11 glue rlang tibble]; }; - archiveRetriever = derive2 { name="archiveRetriever"; version="0.1.0"; sha256="1pfq63db0g818vavf9syf2psqvj7xk9n243hqilf21ijgqwfh165"; depends=[anytime dplyr ggplot2 gridExtra httr jsonlite lubridate rvest stringr tibble tidyr xml2]; }; + archiveRetriever = derive2 { name="archiveRetriever"; version="0.1.1"; sha256="0vm2nncf98vhdv5yq8k66z9bffpxq9hck11r09dmcls997h2p27x"; depends=[anytime dplyr ggplot2 gridExtra httr jsonlite lubridate rvest stringr tibble tidyr xml2]; }; archivist = derive2 { name="archivist"; version="2.3.6"; sha256="0q1qysack30xzxdbvvi56rk7r85hsj4ghls9r70ki7bl3rqwr4c9"; depends=[DBI digest flock httr lubridate magrittr RCurl RSQLite]; }; archivist_github = derive2 { name="archivist.github"; version="0.2.6"; sha256="092fzi505vx9xbk41m86d0isxna42iflp7q2kjiqa6z1ccvim2yx"; depends=[archivist digest git2r httr jsonlite]; }; - arcpullr = derive2 { name="arcpullr"; version="0.2.1"; sha256="12gr2q5ipm20clbpv1snhfff9cp2dr60m3mv0s4iibipv7fhpl4s"; depends=[dplyr ggplot2 httr jsonlite raster rlang sf tidyr]; }; + arcpullr = derive2 { name="arcpullr"; version="0.2.3"; sha256="1g0038pc20nq4wj6ra0vjdynvlkqv95x33ncvrmi4pfa7wbsgh4x"; depends=[bslib dplyr DT ggplot2 httr jsonlite raster rgdal rlang sf tidyr]; }; arctools = derive2 { name="arctools"; version="1.1.4"; sha256="0ldhmv2fs3gi5v5d36y8i1mbw3w4vf2h8f7avlk5zgywn46j75zf"; depends=[lubridate runstats]; }; areabiplot = derive2 { name="areabiplot"; version="1.0.0"; sha256="0izgvlg174jbr3fm3qc8zh23kfs7hn9bwd40x6vm90iivrrgdcp7"; depends=[nipals]; }; areal = derive2 { name="areal"; version="0.1.7"; sha256="1kdnf7c21g51mhf428nl5jl96cfrk5iw1npzp5rv5ys3jp2mvhhi"; depends=[dplyr glue purrr rlang sf]; }; @@ -6089,7 +6100,7 @@ in with self; { arenar = derive2 { name="arenar"; version="0.2.0"; sha256="08b865v7ringqzm5m4ib4nrmlyqywir6bjj7alzmg06dy7mrl9s7"; depends=[auditor DALEX fairmodels gistr iBreakDown ingredients jsonlite plumber]; }; arfima = derive2 { name="arfima"; version="1.7-0"; sha256="0kj8qv6m2fcdw8x735n8fk9cynm0jxi5v9hif0f879sxk6qkxb9y"; depends=[ltsa]; }; argo = derive2 { name="argo"; version="3.0.1"; sha256="1q7gbyk2f8vimwzdmd1mfqyaql2gyawywilwzs6g1716gbk3gd80"; depends=[boot glmnet Matrix XML xtable xts zoo]; }; - argoFloats = derive2 { name="argoFloats"; version="1.0.3"; sha256="085bw6jwm73yryibd5znzs4a0qf1f9w2iha15kkpx517y4z71pgn"; depends=[oce]; }; + argoFloats = derive2 { name="argoFloats"; version="1.0.4"; sha256="0n3c7gs5991fv6ypiagyxb0kzrbv80r7z0kspzbsp8ss04q2ymgc"; depends=[oce]; }; argon2 = derive2 { name="argon2"; version="0.4-0"; sha256="09hzl0wz0lw2v7g64rdv0lij2hq36zl37a6rmxwvinmjdzijcsyw"; depends=[]; }; argonDash = derive2 { name="argonDash"; version="0.2.0"; sha256="1wykr7y5375g1nb18ynybccxmd948xrr0gdwxxqsfjf782vlgd2d"; depends=[argonR htmltools shiny]; }; argonR = derive2 { name="argonR"; version="0.2.0"; sha256="15hlvansqnky9bnq4r7xza3hb1hzylmhz8117wxz9lxa1wiky2is"; depends=[htmltools rstudioapi]; }; @@ -6099,7 +6110,7 @@ in with self; { ari = derive2 { name="ari"; version="0.3.5"; sha256="03w99c918jp23d0kl26vx4m7xjicpgwl5rhn9d0fsm4kvv7j87li"; depends=[hms progress purrr rmarkdown rvest text2speech tuneR webshot xml2]; }; ariExtra = derive2 { name="ariExtra"; version="0.3.1"; sha256="1j8x2m9799i5kxrvsf2cjrffb5p6r4zjrr0khsy4i22xn7kyl8nf"; depends=[ari docxtractr httr jsonlite magrittr mime pdftools rmarkdown rvest text2speech tuneR xml2 yaml]; }; aricode = derive2 { name="aricode"; version="1.0.0"; sha256="0i6vynhby4sjiaxscjrgrb5d96f307yjr8r9ff1fhv264lydcqwl"; depends=[Matrix Rcpp]; }; - arkdb = derive2 { name="arkdb"; version="0.0.14"; sha256="1ih85bc9yz3a9j4k5dgfv7mg907mxj839f4g0w8fdrny0j11dnfg"; depends=[DBI]; }; + arkdb = derive2 { name="arkdb"; version="0.0.15"; sha256="0gbhqkfdivb1b6pw7w7xiypd305kwawdgswb87pq9jld0h0dwzlp"; depends=[DBI]; }; arkhe = derive2 { name="arkhe"; version="0.4.0"; sha256="15dvkbixkxlayd9kwv03y8bx2kvhaiv1sb2s7xgcv9kqf43zankf"; depends=[]; }; arm = derive2 { name="arm"; version="1.12-2"; sha256="0pagrc1vkaz460d0lvrgb4xj6gcd920f4mrc8zpzw07c3v1s2sw1"; depends=[abind coda lme4 MASS Matrix nlme]; }; armada = derive2 { name="armada"; version="0.1.0"; sha256="191iwf5y1za3wssawkyi9jcingfqqxcvv88hglpw6j7y3x5f47hf"; depends=[anapuce circlize ClustOfVar ComplexHeatmap doParallel FAMT glmnet impute mvtnorm qvalue VSURF]; }; @@ -6113,7 +6124,7 @@ in with self; { arrApply = derive2 { name="arrApply"; version="2.1"; sha256="0qy7iwi580rrf3sycsbv6qgxsqcdy9pdbnkdrx81j68qni9iw737"; depends=[Rcpp RcppArmadillo]; }; arrangements = derive2 { name="arrangements"; version="1.1.9"; sha256="0nrlyxgn6667l2rb1q5rvps1anld9aq88qqr3ch2i6zchnqxrdg9"; depends=[gmp R6]; }; arrayhelpers = derive2 { name="arrayhelpers"; version="1.1-0"; sha256="02rl530qxi1idiqpmzg5wr9vl5c7phizhpj64k5pn8xq9zfxbpaz"; depends=[svUnit]; }; - arrow = derive2 { name="arrow"; version="6.0.1"; sha256="14fghz9xijcrck0c65crvfidgyhgzy9b2apwmg7qrgn2sy09xm0p"; depends=[assertthat bit64 purrr R6 rlang tidyselect vctrs]; }; + arrow = derive2 { name="arrow"; version="7.0.0"; sha256="1s9h2aw6iig45nz2rfk13qbp0qydx6cc4r6qs58f9cm9vgwsg76l"; depends=[assertthat bit64 cpp11 purrr R6 rlang tidyselect vctrs]; }; ars = derive2 { name="ars"; version="0.6"; sha256="0zs1rk3i7pc9wcvxrvjcls194mfbvmkz7cb6pwd1cm3fzjwsyxsp"; depends=[]; }; arse = derive2 { name="arse"; version="1.0.0"; sha256="0ssaalc058m09gfcr1n0s729rx2plia3zkhlynj67drclyvhyb0i"; depends=[dplyr pracma]; }; arsenal = derive2 { name="arsenal"; version="3.6.3"; sha256="0qvs3ld28djnjnggdhqjwq8sbv8zz322qahlvf7dnx35yqf6xkms"; depends=[knitr]; }; @@ -6135,7 +6146,7 @@ in with self; { asd = derive2 { name="asd"; version="2.2"; sha256="0p3r4qjam3sl3rpcilb0pgx4xx3ly71xqnvkv31vzjs885lgxz4l"; depends=[mvtnorm]; }; asdreader = derive2 { name="asdreader"; version="0.1-3"; sha256="15a922aw0v5w4hrha03xifx8cpifcc773gambgwqq6i5nz08ya26"; depends=[]; }; ash = derive2 { name="ash"; version="1.0-15"; sha256="1ay2a2agdmiz7zzvn26mli0x0iwk09g5pp4yy1r23knhkp1pn2lb"; depends=[]; }; - ashr = derive2 { name="ashr"; version="2.2-47"; sha256="1rqb5j30ylaf1h4l66x4jxyn5inrvhc42d90qd5mgkxsq0ghdlr4"; depends=[etrunct invgamma Matrix mixsqp Rcpp SQUAREM truncnorm]; }; + ashr = derive2 { name="ashr"; version="2.2-54"; sha256="177xs3apnc6yy6737qqv4z8snf0hkpbghab63hrplbyb9wfssfga"; depends=[etrunct invgamma Matrix mixsqp Rcpp SQUAREM truncnorm]; }; asht = derive2 { name="asht"; version="0.9.7"; sha256="15sd6hvg41z1bvv1003p0hmy4350if67wqp124nfz0m6ix0xb7lw"; depends=[bpcp coin exact2x2 exactci perm ssanv]; }; askpass = derive2 { name="askpass"; version="1.1"; sha256="07q0ik8jzk44vpwh48rr3fnpd7dzsdhjjsl4l850rffv3dyq4h6v"; depends=[sys]; }; aslib = derive2 { name="aslib"; version="0.1.1"; sha256="0vzrxxj298skgv6gn9cbhr75ywmh5amsk9m02zncl20jcydf9j91"; depends=[BatchExperiments BatchJobs BBmisc checkmate corrplot ggplot2 llama mlr parallelMap ParamHelpers plyr reshape2 RWeka stringr yaml]; }; @@ -6165,11 +6176,11 @@ in with self; { assertr = derive2 { name="assertr"; version="2.8"; sha256="00764vv86r3bn4r85in4w637harffyw605fgq0dj6mrbrwcfb650"; depends=[dplyr MASS rlang]; }; assertthat = derive2 { name="assertthat"; version="0.2.1"; sha256="17wy5bdfzg73sg2clisg1k3zyn1adkj59x56m5nwia2k8z67zkw5"; depends=[]; }; assignPOP = derive2 { name="assignPOP"; version="1.2.4"; sha256="1zzapgzf09l39bckwykzr8im2wxmndpmzykll2wi7njwlklpjry3"; depends=[caret doParallel e1071 foreach ggplot2 MASS randomForest reshape2 stringr tree]; }; - assignR = derive2 { name="assignR"; version="2.1.1"; sha256="10494lg0ph5c4ks2z2ndajx3fiwv2my4i32jg89l0z0dxgfaz7lf"; depends=[maptools mvnfast raster rgdal rlang sp]; }; + assignR = derive2 { name="assignR"; version="2.2.0"; sha256="0bz45d9j6d4xq8bdqzv5g063ail38k1j2xmpd88nzj448ch3kcig"; depends=[geosphere maptools mvnfast raster rgdal rlang sp]; }; assist = derive2 { name="assist"; version="3.1.7"; sha256="0avxaa3v4gvb5d7fg761f9l5nr8nyqdq6sq408zpyaki6s6q3acf"; depends=[lattice nlme]; }; assocInd = derive2 { name="assocInd"; version="1.0.1"; sha256="16yzgvlqbapjhvzm5nw8vfrhh8mp9llnhck4bpgmszyrh93z1ha5"; depends=[]; }; assortnet = derive2 { name="assortnet"; version="0.12"; sha256="1vyzrb8vsi9pcdn6jd83k77bg0q2a3dwdvlnmxnshqiif2pakb8m"; depends=[]; }; - asteRisk = derive2 { name="asteRisk"; version="1.3.0"; sha256="0im8rz4vgrlxc4jgjagwwxvx8wwwzwb6in78h4p5yvwjqm0vsfl8"; depends=[deSolve nanotime onion Rcpp RcppParallel]; }; + asteRisk = derive2 { name="asteRisk"; version="1.4.0"; sha256="0sph8jjayrgq0gl6n8hlhxpi4xv5bk2h2g47xx1jajihgkh88wgm"; depends=[deSolve nanotime onion Rcpp RcppParallel]; }; aster = derive2 { name="aster"; version="1.1-2"; sha256="0vf1ffkn4a3bz2lgz1gn2hjgp8c2v9ch05d5r1gh2q77zijvry1m"; depends=[trust]; }; aster2 = derive2 { name="aster2"; version="0.3"; sha256="17d200sg0vn1fj6lb480dhszm70q6ipjldilb3x0jp72hiczakk9"; depends=[Matrix]; }; astroFns = derive2 { name="astroFns"; version="4.1-0"; sha256="0g5q0y067xf1ah91b4lg8mr9imj0d6lgig7gbj3b69fn335k363g"; depends=[]; }; @@ -6186,12 +6197,12 @@ in with self; { asymptor = derive2 { name="asymptor"; version="1.0"; sha256="0fdib7wnfdb0vjflds68638wafw79i0wvwa5ak8q3f7ywawzngzx"; depends=[]; }; asypow = derive2 { name="asypow"; version="2015.6.25"; sha256="0il38djkmw5ka7czpalmhq6yycx7flpdpgbd7p5nx52rsjdv49mj"; depends=[]; }; ata = derive2 { name="ata"; version="1.1.1"; sha256="08wcnfkbcq2al5ivdjkrjr8alaz0026992ra3ihyw6sd74mcracx"; depends=[lpSolve]; }; - atable = derive2 { name="atable"; version="0.1.10"; sha256="1jbpqsyhkkpiwnhwy9alh5s8q68amh0mylyzlc5pilpw0mnq9cjd"; depends=[DescTools doBy effsize Hmisc plyr reshape2 settings]; }; + atable = derive2 { name="atable"; version="0.1.11"; sha256="0xna86l26f00n22hm3fn7kiqij87k6k7b5pa8jmld1bhw6j3cl4w"; depends=[DescTools doBy effsize Hmisc plyr reshape2 settings]; }; atakrig = derive2 { name="atakrig"; version="0.9.8"; sha256="14li2lpb2bksrfdhvnhs4k22jw4r4x9rm6lq9kn9hzif7gsibwr9"; depends=[doSNOW FNN foreach gstat MASS Rcpp rgeos snow sp]; }; atlas = derive2 { name="atlas"; version="1.0.0"; sha256="02wm22j40llmdi6z3rzgbc5fpkzmjfq0xar33bypvj1dx1zxygnd"; depends=[httr testthat]; }; atmcmc = derive2 { name="atmcmc"; version="1.0"; sha256="05k69b5wlysz3kh0yiqvshgvr0nyz34zkvn6bjs30cwz7s9j21pn"; depends=[]; }; atmopt = derive2 { name="atmopt"; version="0.1.0"; sha256="1h79ngq1236gz4w29fs3nj46a3m1x8a28z3xnhc6wn3a46cf8zzi"; depends=[DoE_base gtools hierNet]; }; - atom4R = derive2 { name="atom4R"; version="0.1-1"; sha256="131v4shky6ppnl5i7s0wmlwjaaq1h9cj238f80pg3xd6wiw5ybkj"; depends=[httr jsonlite keyring R6 rdflib XML zip]; }; + atom4R = derive2 { name="atom4R"; version="0.1-2"; sha256="19wv79gy2n0fxi1djlhcswggr43na42qqhpw60q5s1zaiqcfc3k9"; depends=[httr jsonlite keyring R6 rdflib XML zip]; }; atsd = derive2 { name="atsd"; version="1.2.0"; sha256="0jan8r5f2r3l2xpdf9rrv4smkr2l645rfdgdfjb1xa54jd3pqvqs"; depends=[httr RCurl]; }; attachment = derive2 { name="attachment"; version="0.2.4"; sha256="1nvq94l544rgddx5jcvwhap7qz8h292pphvb97ip6jljgjc1dlqw"; depends=[desc glue knitr magrittr rmarkdown roxygen2 stringr]; }; attempt = derive2 { name="attempt"; version="0.3.1"; sha256="1ylgg7jcp8wqmxgf1mydnvh26k0mr8jyjla4hw06730r40yrs58m"; depends=[rlang]; }; @@ -6207,9 +6218,11 @@ in with self; { audit = derive2 { name="audit"; version="0.1-2"; sha256="0c8b94a5am196sbvmjxya7cg4aq6fcxr8c958fxx3jmy9r4hn6s2"; depends=[]; }; auditor = derive2 { name="auditor"; version="1.3.3"; sha256="1y6qpbc78yv2w1y9p0mczv69s661i9n2y0x09c5p3hdka7km662w"; depends=[DALEX ggplot2 ggrepel gridExtra hnp scales]; }; audrex = derive2 { name="audrex"; version="1.0.1"; sha256="06r9gn3rdqxln197iyajdsx8ikq0m2hik171403y3dxxr5bf8jsf"; depends=[abind fANCOVA ggplot2 imputeTS lubridate modeest moments narray purrr rBayesianOptimization readr scales stringr tictoc xgboost]; }; + audubon = derive2 { name="audubon"; version="0.1.1"; sha256="14p07cxswgsdsmblwid9m5nmr0qr00cficg50qlb53fal8n1fajq"; depends=[dplyr magrittr memoise purrr readr rlang stringi V8]; }; augSIMEX = derive2 { name="augSIMEX"; version="3.7.4"; sha256="0620yxqi160ar91shl5macn890zpc60c9nqy4w8i6m7sskv6gl3z"; depends=[Formula MASS nleqslv Rcpp]; }; augmentedRCBD = derive2 { name="augmentedRCBD"; version="0.1.5"; sha256="1bfb1jqakghf1nb3zwzf69cywwxwr1whzvyig8g3qa8ciq5f1h3i"; depends=[dplyr emmeans flextable ggplot2 mathjaxr moments multcomp multcompView officer Rdpack reshape2 stringi]; }; auk = derive2 { name="auk"; version="0.5.1"; sha256="0mf2rwf7sihmk6mla87gznh0s1rqxpijcjjv035iq3id6c81h03l"; depends=[assertthat countrycode dplyr httr magrittr readr rlang stringi stringr tidyr]; }; + aum = derive2 { name="aum"; version="2022.2.7"; sha256="0a2nh1fnn7z4c592gj280w8yb54wi8msfdmg8gzbz52m1x3pxbi0"; depends=[data_table Rcpp]; }; aurelius = derive2 { name="aurelius"; version="0.8.4"; sha256="00bpf9sggvnajpmg3zsdgfjinkb6wbrcf1ris7qfhh1rp5rz4m4m"; depends=[gbm glmnet jsonlite]; }; aurin = derive2 { name="aurin"; version="0.6.0"; sha256="0nh6jy0pkwfxzcxz1xcdcnqd9pkrddmdmfb2pjalfmp04z66h6dv"; depends=[checkmate cli glue httr jsonlite magrittr ows4R R6 sf stringr]; }; ausplotsR = derive2 { name="ausplotsR"; version="1.2.7"; sha256="0vlldbdbgplk6a9n2xkac8i5nxf0y2p4zbrw5q9a3qc71zfl33yj"; depends=[betapart curl ggplot2 gtools httr jose jsonlite mapdata maps maptools plyr R_utils sp vegan]; }; @@ -6221,6 +6234,7 @@ in with self; { autoFRK = derive2 { name="autoFRK"; version="1.4.3"; sha256="1k3h2gsck06dnvrifg9rhxi6b3fwfjrkvg0q2wzb9kdnnzgiwcln"; depends=[fields filehash filehashSQLite filematrix FNN LatticeKrig MASS mgcv Rcpp RcppEigen RcppParallel RSpectra spam]; }; autoMFA = derive2 { name="autoMFA"; version="1.0.0"; sha256="1sbcl38cq7y7hln1qffk5s71xgg9hs7dlwyvynqf96z2z2421pw4"; depends=[abind expm MASS Matrix pracma Rdpack Rfast usethis]; }; autoMrP = derive2 { name="autoMrP"; version="1.0.1"; sha256="1ipqzjd9knpyz2ajxw38z8sbg4w4cgyg6627xlyx8i14wbdgrxmy"; depends=[doParallel doRNG dplyr e1071 EBMAforecast forcats foreach gbm ggplot2 glmmLasso knitr lme4 purrr R_rsp rlang tibble tidyr]; }; + autoRasch = derive2 { name="autoRasch"; version="0.1.5"; sha256="16xwh8v6p3ympn0xljb7d77n04g31gcppv8v39p96yfc9vaxkhsw"; depends=[doParallel foreach lavaan Rcpp RcppArmadillo]; }; autoReg = derive2 { name="autoReg"; version="0.1.0"; sha256="1c5b02jxfsjk9byyj5z5491lv7dbzx2hp3kwbjcy0wvpz7wg1gnc"; depends=[boot broom cmprsk dplyr flextable ggplot2 mice moonBook nortest officer patchwork purrr rlang stringr survival tidyr tidyselect]; }; autoTS = derive2 { name="autoTS"; version="0.9.11"; sha256="1mwpazynp5hdc2ccnhvddkajfcd4qam23pvjl9accq1rnxzxkiyv"; depends=[dplyr forecast ggplot2 lubridate magrittr plotly prophet RcppRoll rlang shiny shinycssloaders tidyr]; }; autocart = derive2 { name="autocart"; version="1.4.5"; sha256="1zgcmrm4dkdnr130hwwka2nwdczgvc3jc9hxrb6nfs8ijb24gl36"; depends=[fields mgcv Rcpp RcppArmadillo RcppParallel]; }; @@ -6235,10 +6249,10 @@ in with self; { automl = derive2 { name="automl"; version="1.3.2"; sha256="1nrg8q3y6rv69nmnsylg8rps4b4prx46j5a8ljlr24yc34504ck3"; depends=[]; }; autoplotly = derive2 { name="autoplotly"; version="0.1.4"; sha256="1z577jvadgiz028z7x0786d3qhlkrvv9i34xmllizvg94kxv3bl1"; depends=[ggfortify ggplot2 plotly]; }; autoshiny = derive2 { name="autoshiny"; version="0.0.2"; sha256="0s06ynnirgsh19x8qq4020piirkhvjqpvz372syygvlal062y6cn"; depends=[shiny]; }; - autostats = derive2 { name="autostats"; version="0.2.0"; sha256="0w2ca0lxbcjgvvd9zz7ym7bnfdp94kjk72igq7v93l6hq2s681jr"; depends=[agtboost BBmisc broom broom_mixed Ckmeans_1d_dp dials dplyr flextable forcats framecleaner ggeasy ggplot2 ggstance ggthemes glmnet gtools hardhat janitor jtools lubridate magrittr Matrix nnet parsnip party patchwork presenter purrr readr recipes rlang rlist rsample stringr tibble tidyr tidyselect tune workflows xgboost yardstick]; }; + autostats = derive2 { name="autostats"; version="0.3.0"; sha256="11girpxlqfvxwp7356yjin8gyxw5mj64yr1gpj35ljc7ycx6j1kz"; depends=[agtboost BBmisc broom broom_mixed Ckmeans_1d_dp data_table dials dplyr flextable FOCI forcats framecleaner ggeasy ggplot2 ggstance ggthemes glmnet gtools hardhat janitor jtools lubridate magrittr Matrix nnet parsnip party patchwork presenter purrr readr recipes rlang rlist rsample stringr tibble tidyr tidyselect tune workflows xgboost XICOR yardstick]; }; autostsm = derive2 { name="autostsm"; version="3.0.0"; sha256="1pv8pfj0wmfrxng2a3vkq0asa1dld4ibz5px4hkk0pfkkqvwg8m3"; depends=[data_table doSNOW foreach forecast ggplot2 ggrepel gridExtra lmtest lubridate maxLik progress Rcpp RcppArmadillo sandwich strucchange]; }; autothresholdr = derive2 { name="autothresholdr"; version="1.4.0"; sha256="1n8kfl7zk7smwmkj1rlp4j4i0jnwi2f0aw58jhlf7ivahrq0rmnk"; depends=[checkmate ijtiff magrittr purrr Rcpp rlang strex stringr]; }; - av = derive2 { name="av"; version="0.6.0"; sha256="0g6815y24h4la714a5bkj7nj4n39jycfynkli6y3jlijql96j2il"; depends=[]; }; + av = derive2 { name="av"; version="0.7.0"; sha256="004crdrsgh2dak64zmr5w0pj94vpalgmb76g1cb452djavbp7rxl"; depends=[]; }; available = derive2 { name="available"; version="1.0.5"; sha256="1mlyzmfskam3d0mnr5hncxi2jhc5lhny1ynvxvbnx15vj8f6r7y5"; depends=[cli clisymbols crayon desc glue jsonlite memoise SnowballC stringdist tibble tidytext udapi yesno]; }; avar = derive2 { name="avar"; version="0.1.1"; sha256="1i0bk3y0ca58ihwn4di8rpkp5vs2j5b80rcvaf72n9h2hp8i2ncz"; depends=[Rcpp RcppArmadillo simts]; }; averisk = derive2 { name="averisk"; version="1.0.3"; sha256="02j27d4jxgy2bk5sgxp1xdfyqr321civs99qj0g8cp34gwqk0j3m"; depends=[MASS]; }; @@ -6266,9 +6280,9 @@ in with self; { bRacatus = derive2 { name="bRacatus"; version="1.0.7"; sha256="1xzrwmd6wj5c1nqrg7wry4zjq2np010dzilg631vgf7f7vg9ch94"; depends=[data_table geojsonio jsonlite maptools plotfunctions raster rgbif rgdal rgeos rworldmap sp]; }; bReeze = derive2 { name="bReeze"; version="0.4-3"; sha256="17nc6qvw9l6sq8knd1mk193md2y3z1jlcjymqzl389yxj8s0i2il"; depends=[lubridate]; }; bSims = derive2 { name="bSims"; version="0.3-0"; sha256="055hqa5w4gaqz9mms9yj85wg0pgl6xa568nbjxm4qc75rsy91qg5"; depends=[deldir intrval MASS mefa4 pbapply]; }; - bWGR = derive2 { name="bWGR"; version="1.6.6"; sha256="1m5spafvl5pn0s60vaf8wz7iaibsa7laq7kp8y9xj20pp3f76hvr"; depends=[Rcpp]; }; + bWGR = derive2 { name="bWGR"; version="2.0"; sha256="16yhy6gnjkgrlj41mszfadzvb83c8l4wa5gvlvzlm7cdrdrp33p0"; depends=[Matrix Rcpp RcppEigen]; }; baRcodeR = derive2 { name="baRcodeR"; version="0.1.5"; sha256="1fdywv7mvxx3q8pildsfllmw814f2p71xcwvfmplngv2vgrpzz9w"; depends=[DT miniUI qrcode rstudioapi shiny]; }; - baRulho = derive2 { name="baRulho"; version="1.0.5"; sha256="0419nfhk5846ysc5p3dnlzfc1q5nsksgpwbjcif23fk4w13c7b9x"; depends=[fftw pbapply seewave tuneR warbleR]; }; + baRulho = derive2 { name="baRulho"; version="1.0.6"; sha256="17g3xs0lxdpbbi52x27r00vfdgxdhjblyy939scm3c5z01fhxxnb"; depends=[fftw pbapply seewave tuneR warbleR]; }; babar = derive2 { name="babar"; version="1.0"; sha256="13j5klrcnd4dwrgdbxlvwcj56l9mzi4j9ga6jj5i04pgdc6vsfx5"; depends=[]; }; babel = derive2 { name="babel"; version="0.3-0"; sha256="1iwvx69051yhlxbcl6bypvc3mcih0q8bf3i29r3i79356hp12xqa"; depends=[edgeR]; }; babelgene = derive2 { name="babelgene"; version="21.4"; sha256="1gk5pm3b3shr1id66a11ywc1b823gbj8yckg24szzfhj8g4ixyf0"; depends=[dplyr rlang]; }; @@ -6284,13 +6298,12 @@ in with self; { backtest = derive2 { name="backtest"; version="0.3-4"; sha256="1s0mf247dz2vvyf4m3sp9xiqhv7xcs4rphyg9gdcy73060sah2ad"; depends=[lattice]; }; bacondecomp = derive2 { name="bacondecomp"; version="0.1.1"; sha256="1sd6pbhmx8vxz5c2cvvadbjy7p15y91gzs3n0ish7h5br1vq8fpm"; depends=[]; }; bacr = derive2 { name="bacr"; version="1.0.1"; sha256="14zr1v4rihx0ra3x0vsb81vsz0g8gzskkdxkg7nhiz835hp2fiy8"; depends=[MCMCpack]; }; - badgecreatr = derive2 { name="badgecreatr"; version="0.2.0"; sha256="0mdixklaxky5gs8zm99ky280vxxlbq1mxnaarq6x0d1cb71bzv4l"; depends=[git2r]; }; badger = derive2 { name="badger"; version="0.1.0"; sha256="09g8183dz58546mcql7fs2px71ycpi2jfw69zca9d96c9py98ryn"; depends=[desc dlstats rvcheck usethis]; }; bagged_outliertrees = derive2 { name="bagged.outliertrees"; version="1.0.0"; sha256="0fcd54j6vci2yvlb609dck4pwbn54irkdk472cjc965rcw6dz9z7"; depends=[data_table doSNOW dplyr foreach outliertree rlist]; }; baggedcv = derive2 { name="baggedcv"; version="1.0"; sha256="1rqs4sm6g1anck5s2dxlm1vcmylpphcbs2dpvf1sjki5lrzdq9z4"; depends=[doParallel foreach kedd mclust]; }; baggingbwsel = derive2 { name="baggingbwsel"; version="1.0"; sha256="0khvkxml4nwkahgl5ijdv0bjgwabmznzq99p71iw26ck808hafkl"; depends=[doParallel foreach kedd mclust misc3d nor1mix Rcpp rgl rpanel sm tkrplot]; }; baggr = derive2 { name="baggr"; version="0.6.18"; sha256="0qmsg3w6blpj9nlk0blzlm7l04z4r33gw17r6n52l2wf8x0giirx"; depends=[bayesplot BH crayon forestplot ggplot2 gridExtra Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders testthat]; }; - baguette = derive2 { name="baguette"; version="0.1.1"; sha256="0srvvnyhi22r3l8j996zpq8mm140imdrijc0xhb8j9qgkqaia1b7"; depends=[butcher C50 dials dplyr earth furrr generics hardhat magrittr parsnip purrr rlang rpart rsample tibble tidyr withr]; }; + baguette = derive2 { name="baguette"; version="0.2.0"; sha256="0ik19w7cgbzp4n4f9v1s7sf668m45sqfw4m4ny7mbfjdq53iag28"; depends=[butcher C50 dials dplyr earth furrr generics hardhat magrittr parsnip purrr rlang rpart rsample tibble tidyr withr]; }; bahc = derive2 { name="bahc"; version="0.3.0"; sha256="0yz0v33fhm38ivhr7bvajk9v7wdmhg9qg7ac8r2qr00rns82m6y3"; depends=[fastcluster matrixStats]; }; bain = derive2 { name="bain"; version="0.2.8"; sha256="101rlxf1m6nrmzwxxv2w0m2a9s26l39a5nfjnad8gza5rvj7q076"; depends=[lavaan]; }; baker = derive2 { name="baker"; version="1.0.0"; sha256="166j6b2j3r0apsnvcnfycxhf1kv4nblscmnjdl2xsw5wwrbx677f"; depends=[abind binom coda ggplot2 ggpubr gridExtra lubridate mgcv mvbutils R2jags reshape2 rjags robCompositions shinydashboard shinyFiles]; }; @@ -6304,7 +6317,6 @@ in with self; { bannerCommenter = derive2 { name="bannerCommenter"; version="1.0.0"; sha256="1i0b3v4n0xylcbrg9i3a28z037m27vjfg61xz2hl99wavn0bsl1j"; depends=[]; }; banter = derive2 { name="banter"; version="0.9.4"; sha256="076jjgfw193bzmymqgsgg4fppd2zvwskjw9b3zxzybnydyz7shfi"; depends=[dplyr ggplot2 gridExtra magrittr randomForest rfPermute rlang swfscMisc tibble tidyr]; }; banxicoR = derive2 { name="banxicoR"; version="0.9.0"; sha256="0vchm2hnqm45fhn8k38rcam4vkazmifcl40390s2r04bgvqr0pnl"; depends=[rvest stringr xml2]; }; - bapred = derive2 { name="bapred"; version="1.0"; sha256="08kvc4cc984jv08ikwbja8zxidrcdiwi5w88hlqakbm8yc6hzssa"; depends=[affy affyPLM Biobase FNN fuzzyRankTests glmnet lme4 MASS mnormt sva]; }; barcode = derive2 { name="barcode"; version="1.1"; sha256="14zh714cwgq80zspvhw88cs5b82gvz4b6yfbshj9b7x0y2961nxd"; depends=[lattice]; }; bardr = derive2 { name="bardr"; version="0.0.9"; sha256="02499b3j10j7qq3whz9qijfp3amp0s1ji8qk76c53dsnkj8f9hvs"; depends=[]; }; barplot3d = derive2 { name="barplot3d"; version="1.0.1"; sha256="182kpiknv3id1bsgcc6b3ahbxmm8x3lxcpf1r6rckpr3s0whfx3g"; depends=[rgl]; }; @@ -6376,9 +6388,8 @@ in with self; { bayesloglin = derive2 { name="bayesloglin"; version="1.0.1"; sha256="0j2ziahf6mwsz2gvb1azvdzlmszlpqgr5zqcqa68pxgq947sa2cs"; depends=[igraph]; }; bayeslongitudinal = derive2 { name="bayeslongitudinal"; version="0.1.0"; sha256="0g45ikpnbry1albb3asrzab5z3sy98yf74c64qn02d65xgafifwg"; depends=[LearnBayes MASS mvtnorm]; }; bayesm = derive2 { name="bayesm"; version="3.1-4"; sha256="154glks7rsjkza0sfi1kj7wj727py9sl1ba6sswflwmwc9n226q6"; depends=[Rcpp RcppArmadillo]; }; - bayesmeta = derive2 { name="bayesmeta"; version="2.7"; sha256="1zl2y916jgl40mqzphgjwsqr4mbxvvggp0irirbb9nyzj5frqpjg"; depends=[forestplot metafor numDeriv]; }; + bayesmeta = derive2 { name="bayesmeta"; version="3.0"; sha256="035kjg86sfd3j8g9421id6z208rfmpk63qp0fpssv44zb96wy4wv"; depends=[forestplot metafor mvtnorm numDeriv]; }; bayesmix = derive2 { name="bayesmix"; version="0.7-5"; sha256="0s1a221vwia92pinja2r5b5abm4dhcrs81m4frqnf0522qh0y75f"; depends=[coda rjags]; }; - bayesmodels = derive2 { name="bayesmodels"; version="0.1.1"; sha256="1m9428fzirpfzypd2zdcqhjv2cm05s3qmlxj4ymz6i1dg32svqzr"; depends=[BASS bayesforecast brms bsts cli crayon dials dplyr magrittr modeltime parsnip purrr rlang Rlgt rstan rstudioapi tibble timetk workflows]; }; bayesmove = derive2 { name="bayesmove"; version="0.2.1"; sha256="1l6i8qh7l53x0133gjc5jvri4vnnfviq9y3mcr1kfa5j84gfnmsf"; depends=[dplyr dygraphs furrr future ggplot2 leaflet lubridate magrittr MCMCpack progress progressr purrr Rcpp RcppArmadillo rlang sf shiny tictoc tidyr]; }; bayesnec = derive2 { name="bayesnec"; version="2.0.2"; sha256="1ps00byg0s0wf86w9nq6yhn4ak1ca6gmkafz3bmycr4alxhgjdqr"; depends=[brms dplyr evaluate extraDistr formula_tools ggplot2 loo purrr rlang tidyr tidyselect]; }; bayesplay = derive2 { name="bayesplay"; version="0.9.2"; sha256="06i16a36b26p0r635bl37kvk7k083p970154yhkv80p7qc84n4sv"; depends=[gginnards]; }; @@ -6393,7 +6404,7 @@ in with self; { bayfoxr = derive2 { name="bayfoxr"; version="0.0.1"; sha256="1295296mbjpmd0bg1pfxvyp0az3sry6gsq9ir3l8x64w5a4qrzd5"; depends=[]; }; baymedr = derive2 { name="baymedr"; version="0.1.1"; sha256="0lsp9g9xjwwf2znh4vld41pgdn55ncvmdsyg84ifhdqzjrsgwc6f"; depends=[rlang stringr]; }; baystability = derive2 { name="baystability"; version="0.1.0"; sha256="1zv4bf5a4p21w2qpr6lcsgsxb0xv15v8p33031rsypmnbs9i80dp"; depends=[dplyr ggfortify ggplot2 lme4 magrittr MASS matrixStats reshape2 rlang rstiefel scales tibble tidyr tidyverse]; }; - baytrends = derive2 { name="baytrends"; version="2.0.5"; sha256="02cxb1iw6h0zj6f3qh52rndv50lvzkjbxnc7fqnkg022gximc201"; depends=[dataRetrieval digest lubridate memoise mgcv plyr survival]; }; + baytrends = derive2 { name="baytrends"; version="2.0.7"; sha256="1nzwj2k07w4yvgs1vf0mbsqyvyppx2mj6hqkcvb9npalsc8g9dm4"; depends=[dataRetrieval digest dplyr fitdistrplus knitr lubridate memoise mgcv pander plyr readxl sessioninfo survival]; }; bazar = derive2 { name="bazar"; version="1.0.11"; sha256="1q2w5pvlb51lzbb5k719sf1lrhffandkfqlcvi2prw4dmq7qjxv9"; depends=[kimisc]; }; bbdetection = derive2 { name="bbdetection"; version="1.0"; sha256="1j6xcbfsrg3wcr1rpddj7ia33szn5bs0wk4mzq42d761clsr5qq8"; depends=[ggplot2 Rcpp xtable zoo]; }; bbefkr = derive2 { name="bbefkr"; version="4.2"; sha256="1wjx652w3p41sq71a2zdzmb7frjxm6xvcgrc2ark2spwb0lbjjw6"; depends=[]; }; @@ -6401,8 +6412,8 @@ in with self; { bbl = derive2 { name="bbl"; version="1.0.0"; sha256="135i619lliy93dvgb7ymrcdh20y2b1j7s0y6awzcs3w0hbyd8j5z"; depends=[pROC RColorBrewer Rcpp]; }; bbmle = derive2 { name="bbmle"; version="1.0.24"; sha256="1bck8rmink4wsk8pcbnj4d60svxymp29pxbzwj8p9gzsg42c1v81"; depends=[bdsmatrix lattice MASS Matrix mvtnorm numDeriv]; }; bbo = derive2 { name="bbo"; version="0.2"; sha256="19xrbla3bb3csg3gjjrpkgyr379zfwyh293bcrcd6j8rnm6g4i01"; depends=[]; }; - bbotk = derive2 { name="bbotk"; version="0.5.0"; sha256="15y1w3mi1g91p73786ql1mmqld011757vax17i1vq7zw1s51yzxz"; depends=[checkmate data_table lgr mlr3misc paradox R6]; }; - bbreg = derive2 { name="bbreg"; version="2.0.1"; sha256="0wixhqfw8yp37874zwqb4vwi9xrzlkb761lbw7h70bds0dy6jcg5"; depends=[expint Formula pbapply statmod]; }; + bbotk = derive2 { name="bbotk"; version="0.5.1"; sha256="1171vcs96j8f4n0rjsbbiscs4nxgd4209lr9biy99lvhjvjdsfsm"; depends=[checkmate data_table lgr mlr3misc paradox R6]; }; + bbreg = derive2 { name="bbreg"; version="2.0.2"; sha256="0mi2834v4cvrhvpnzkb4lgkqq993c3c1yzsxdnmny4p6yxw1q547"; depends=[expint Formula pbapply statmod]; }; bbricks = derive2 { name="bbricks"; version="0.1.4"; sha256="1hv4hvnns9vgl6c3n7kg3g9mfcp26ksps29hdl5nwi28cgkx80w2"; depends=[]; }; bbsBayes = derive2 { name="bbsBayes"; version="2.3.8.2020"; sha256="043wj15w7vb5xzwyrzfzf19n3iccly9mdw75lw176i3wfdnprhfv"; depends=[dplyr geofacet ggplot2 ggrepel jagsUI latticeExtra progress rappdirs rgdal sbtools sf stringr]; }; bbw = derive2 { name="bbw"; version="0.1.3"; sha256="1z3an561qh0rfi3jhh1ghsdbg8aimqmf4hpqri2jz39in3p0gwg4"; depends=[car]; }; @@ -6421,12 +6432,13 @@ in with self; { bcp = derive2 { name="bcp"; version="4.0.3"; sha256="0vhs89lb2wpanqsljclpvwbjmgdsc3jicws8bzqiqh8mbs3nzpxy"; depends=[Rcpp RcppArmadillo]; }; bcpa = derive2 { name="bcpa"; version="1.1"; sha256="0rwbd39szp0ar9nli2rswhjiwil31zgl7lnwm9phd0qjv8q0ppar"; depends=[plyr Rcpp]; }; bcpmeta = derive2 { name="bcpmeta"; version="1.0"; sha256="02fw1qz9cvr7pvmcng7qg7p04wxxpmvb2s8p78f52w4bf694iqhl"; depends=[mvtnorm]; }; - bcputility = derive2 { name="bcputility"; version="0.2.0"; sha256="0aybhgi6pnl9xzx0gvinsj4g2gvnpxssar2v7imdz5yqsdvcw6yr"; depends=[data_table DBI odbc sf]; }; + bcputility = derive2 { name="bcputility"; version="0.3.0"; sha256="19yyc15d11k2az7ah4ql0m6w9iwc3h370r0ak2nmzldsjsajm8fd"; depends=[data_table DBI odbc sf]; }; bcrm = derive2 { name="bcrm"; version="0.5.4"; sha256="1j8bfa3x7h77vs41k4nqbqlb961szp1fkhc181wzb3zpbnzmjhhy"; depends=[ggplot2 knitr mvtnorm rlang]; }; bcrypt = derive2 { name="bcrypt"; version="1.1"; sha256="1wwdin8x09y8n8zrwj1ylh5ikcz0v0la4wmrsvbdr61cg336wzx4"; depends=[openssl]; }; bcv = derive2 { name="bcv"; version="1.0.1.4"; sha256="1iln1blr2sdjjv66g73jkj26h1kzfs2sfvw5k7b76mgc0703k45s"; depends=[]; }; bdDwC = derive2 { name="bdDwC"; version="0.1.15"; sha256="0yraq8a0wgz12rzi2dx0gdcz5rx99qd2pzw972wjqyq3rs41pwx0"; depends=[shiny shinyBS shinydashboard shinyFiles shinyjs]; }; bda = derive2 { name="bda"; version="15.2.5"; sha256="19m7xrsckw0lncmi0qsmy194f2c9lmi1vac37h9jfvkb3i30fx20"; depends=[boot]; }; + bdc = derive2 { name="bdc"; version="1.0.0"; sha256="1hpdkdhhfs3c0i7xv27jmhfq0yrj4mn64c725m468v9kxnqpqih9"; depends=[CoordinateCleaner dplyr DT foreach fs ggplot2 here magrittr purrr qs readr rgnparser rnaturalearth sf stringdist stringi stringr taxadb tibble tidyselect]; }; bdchecks = derive2 { name="bdchecks"; version="0.1.7"; sha256="1pzsvn1m1f9bdmhxmh57pvn9jm4z41rkvv6h60hq2lfgkapnjy7q"; depends=[bdDwC data_table DT finch knitr rgbif shiny shinyBS shinydashboard shinyjs spocc yaml]; }; bdclean = derive2 { name="bdclean"; version="0.1.15"; sha256="14cy8yaqd6bg2zyh2wvndydk9sigaydavxl4cfypqz5kqdhj82z9"; depends=[bdchecks bdDwC data_table DT finch knitr leaflet rgbif rmarkdown shiny shinydashboard shinyjs spocc]; }; bde = derive2 { name="bde"; version="1.0.1"; sha256="1f25gmjfl58x4pns89abfk85yq5aad3bgq9yqpv505g5gxk62d3v"; depends=[ggplot2 shiny]; }; @@ -6444,7 +6456,7 @@ in with self; { bdynsys = derive2 { name="bdynsys"; version="1.3"; sha256="07gfyp0qwq9y1cnh7lhcz7q0b1s51cjwlbpll50l2cza2dszmf29"; depends=[caTools deSolve Formula Hmisc MASS matrixStats plm pracma]; }; bea_R = derive2 { name="bea.R"; version="1.0.6"; sha256="15pdbwz7av8862bl144n998qk0w9rqwip9m2brdm5hj7id5xdlif"; depends=[chron colorspace data_table DT ggplot2 googleVis gtable htmltools htmlwidgets httpuv httr jsonlite magrittr munsell plyr Rcpp scales shiny shinydashboard stringi stringr xtable yaml]; }; beadarrayFilter = derive2 { name="beadarrayFilter"; version="1.1.0"; sha256="044dq5irc00v2f2gjz0vb69w7q7b84lppc55ganabdv4f0dxdblc"; depends=[beadarray RColorBrewer]; }; - beadplexr = derive2 { name="beadplexr"; version="0.4.0"; sha256="0y5xrs88zm2bp2dlz8bndldispyj6ipgjr7vzrfl26yd2p7qjqd0"; depends=[cluster dplyr drc fpc ggplot2 magrittr mclust purrr raster rlang tibble tidyr yaml]; }; + beadplexr = derive2 { name="beadplexr"; version="0.4.1"; sha256="1n37qk4p2kgcrb2w4xmgnrgibjv0pdmlzd1y0c1z6njszg2livgz"; depends=[cluster dplyr drc fpc ggplot2 magrittr mclust purrr raster rlang tibble tidyr yaml]; }; beakr = derive2 { name="beakr"; version="0.4.3"; sha256="0l6475l5d58g5ahz4b3vrdlvl656p2rasni17gz4y1l2rd0pvvh4"; depends=[base64enc httpuv jsonlite magrittr mime R6 stringr webutils]; }; beam = derive2 { name="beam"; version="2.0.2"; sha256="17c7zww1160jxm0q6vb5h59zipjjfyc3pls30y5v4vyk7kr9rdvx"; depends=[assertthat BH fdrtool igraph knitr Matrix Rcpp RcppArmadillo]; }; beanplot = derive2 { name="beanplot"; version="1.2"; sha256="0wmkr704fl8kdxkjwmaxw2a2h5dwzfgsgpncnk2p2wd4768jknj9"; depends=[]; }; @@ -6474,7 +6486,7 @@ in with self; { benford_analysis = derive2 { name="benford.analysis"; version="0.1.5"; sha256="0y0c7l2r9s7lg9bw4ndcqwisa5l6a2cpydn1vmz88h3yva0l68cg"; depends=[data_table]; }; bentcableAR = derive2 { name="bentcableAR"; version="0.3.0"; sha256="1gjrlv94av9955jqhicaiqm36rrgmy0avxn9y7wbp2s1sbg7fyg7"; depends=[]; }; benthos = derive2 { name="benthos"; version="1.3-6"; sha256="1vywnc6k37gpaq7g59v3qa6619svcmnd8ri5zm5l0ila2s3ccb2c"; depends=[dplyr lazyeval readr]; }; - berryFunctions = derive2 { name="berryFunctions"; version="1.20.1"; sha256="03kccwvkc5nwpyg97dsigmwgk8nwk4j9rpn2z8gc71pcf2b3ixyj"; depends=[abind]; }; + berryFunctions = derive2 { name="berryFunctions"; version="1.21.0"; sha256="0pzb9lsbls7jcyaj1vg9cqgdqc8gbjab83xlsbdi8w40zgsv85vf"; depends=[abind]; }; bestNormalize = derive2 { name="bestNormalize"; version="1.8.2"; sha256="0pbyn0ay43jcxssxgvivvfakcwq0y23c2qq6a01656q9lqbv9f1r"; depends=[butcher doParallel doRNG dplyr foreach LambertW nortest purrr recipes tibble]; }; bestSDP = derive2 { name="bestSDP"; version="0.1.2"; sha256="1rff6jij9wmlpalzilvid8jvj2pczrchx0yrg0vhy00j64zg6jzs"; depends=[dplyr DT ggplot2 readxl rlist shiny shinyBS shinydashboard shinyjs shinythemes shinyWidgets stringr tidyr]; }; bestglm = derive2 { name="bestglm"; version="0.37.3"; sha256="1zncy958hlwyyxrp6yvq1inq6mpyrbr6cdkf8maijfirr5j8f0ya"; depends=[glmnet grpreg lattice leaps pls]; }; @@ -6482,7 +6494,6 @@ in with self; { betaBayes = derive2 { name="betaBayes"; version="1.0"; sha256="15dp5dd0sw613xjkdfqw4iizfdagflp0qwykmng8ml6agwd21s4p"; depends=[betareg coda Rcpp RcppArmadillo]; }; betaboost = derive2 { name="betaboost"; version="1.0.1"; sha256="1zdyzxl2kp2i5lkiz280wz4av9wqklbn25zmq6n4yb6a579yjfn8"; depends=[gamboostLSS mboost]; }; betacal = derive2 { name="betacal"; version="0.1.0"; sha256="19wgpgf9yhckl9qx9v24f4yh055wfalphcxwm7lg68px6ap2pxl9"; depends=[]; }; - betafam = derive2 { name="betafam"; version="1.0"; sha256="1nf5509alqnr5qpva36f1wb7rdnc084p170h91jv89xvzsidqxca"; depends=[]; }; betafunctions = derive2 { name="betafunctions"; version="1.6.1"; sha256="051d4fryvcdfbsm087mxqlx247jz671wx5rffsffg828azj2mxh9"; depends=[]; }; betalink = derive2 { name="betalink"; version="2.2.1"; sha256="1wskr8nh1jzcrnc8fn58lscphsvj5z9p1i1pnpfdjn60mdb09rkp"; depends=[igraph plyr stringr]; }; betapart = derive2 { name="betapart"; version="1.5.4"; sha256="1m2rykch2vhh90s08s9s2kmmrxhp9ik32s5zkdw8991cbw2j7n68"; depends=[ape doSNOW fastmatch foreach geometry itertools picante rcdd snow]; }; @@ -6498,7 +6509,7 @@ in with self; { bfp = derive2 { name="bfp"; version="0.0-44"; sha256="1lh25g4ac1f1asz4i0mnizbxqzslz6kjlg1d7mcjnp6qn7pkmg20"; depends=[Rcpp]; }; bfsMaps = derive2 { name="bfsMaps"; version="0.9.6"; sha256="0k3bwda32j0rfdkzddqf81mpaa1z73cm05xh19psa51vgrbn9gg9"; depends=[DescTools maptools rgdal rgeos rlang sp spdep]; }; bfsl = derive2 { name="bfsl"; version="0.2.0"; sha256="10z3w1fk4va2ajvpnqp0llgw4a047iaya6xi57if1a7jd7r1jxfh"; depends=[generics]; }; - bfw = derive2 { name="bfw"; version="0.4.1"; sha256="1dwl6p70wbgippysl7vk8nv6rc78f6h5xl8fna98zv99qf0ib31c"; depends=[coda MASS runjags]; }; + bfw = derive2 { name="bfw"; version="0.4.2"; sha256="0qgq47axa0r9653d1sjm00fvfx49v28id5sngwyrgkppcngmbg9p"; depends=[circlize coda data_table dplyr ggplot2 magrittr MASS officer plyr png runjags rvg scales]; }; bgeva = derive2 { name="bgeva"; version="0.3-1"; sha256="0qm4xknyab8hdyn3in2hsvm8s062cnmqqf41b5jvax1mi5hs0z8c"; depends=[magic mgcv trust]; }; bggAnalytics = derive2 { name="bggAnalytics"; version="0.2.0"; sha256="01wflzgb2156xaial47ms740xaddvx9anyv8vv760dw2r79wfac0"; depends=[checkmate data_table pryr R6 stringr xml2]; }; bggum = derive2 { name="bggum"; version="1.0.2"; sha256="04vr9z81awavkhk3lbi8yasmi242lrbnq0pzqp38xlrn5xkf8b1w"; depends=[Rcpp RcppDist]; }; @@ -6507,13 +6518,13 @@ in with self; { bgsmtr = derive2 { name="bgsmtr"; version="0.7"; sha256="17706qims9637ppwg0vszkcm6kmvhzyrdihkgigpiv5lknhk2q3m"; depends=[CholWishart coda EDISON glmnet inline LaplacesDemon Matrix matrixcalc miscTools mnormt mvtnorm Rcpp sparseMVN statmod]; }; bgumbel = derive2 { name="bgumbel"; version="0.0.3"; sha256="18k8dy44x49hr4s37hjrq60c3cbw0slc9gjmd8gwcbz4slix2ydk"; depends=[coda MASS MCMCpack quantreg SparseM]; }; bhm = derive2 { name="bhm"; version="1.17"; sha256="14n78ca8qxdjdk3pxi72fcajcw5ndfncc8a6bc8k2jqj6l0k05qf"; depends=[coda ggplot2 MASS survival]; }; - bhmbasket = derive2 { name="bhmbasket"; version="0.9.4"; sha256="0zl1npc0mv08xfgy4wakvkgp093hs6s4nkn4xn3j75fv2a8vw1p5"; depends=[doRNG foreach R2jags]; }; + bhmbasket = derive2 { name="bhmbasket"; version="0.9.5"; sha256="1mcgbvlnrmxlxqcjmc7ij7qn3zqfwsmbx2r2facbqrf043hmiipc"; depends=[doRNG foreach R2jags]; }; bhpm = derive2 { name="bhpm"; version="1.7"; sha256="0fhk2gmghibf7la864dzm19bm76525gzbj03vw0y0zwbv9shbpcp"; depends=[coda]; }; biClassify = derive2 { name="biClassify"; version="1.3"; sha256="14z3kmpmlvnkjwpjspajdfx5951cmck4binszzdd7nqbai5f1dwv"; depends=[DAAG expm fields MASS Matrix mvtnorm Rcpp RcppArmadillo]; }; biasbetareg = derive2 { name="biasbetareg"; version="1.0"; sha256="1562zdin0y5mrp36ih11ir3h9cv49cx1l98chxd89fkj8x3c1fbg"; depends=[betareg]; }; bib2df = derive2 { name="bib2df"; version="1.1.1"; sha256="0d57883df774qqwpssmly3f1gci32yc5sgwc3x8f2rjih23s1nf6"; depends=[dplyr httr humaniformat stringr]; }; biblio = derive2 { name="biblio"; version="0.0.6"; sha256="079p0qzmi3sg2ff7ln9lg65lf7r402rldqfpxmfvckhm9s6b29b4"; depends=[stringr yamlme]; }; - bibliometrix = derive2 { name="bibliometrix"; version="3.1.4"; sha256="14s1mn0j9120m1nh46380qbffy6d4zcx9ii3axbcwmhry0yr2ndw"; depends=[bibliometrixData dimensionsR dplyr DT factoextra FactoMineR forcats ggplot2 ggrepel igraph Matrix openxlsx plotly pubmedR RColorBrewer readr readxl rscopus shiny SnowballC stringdist stringr tidyr tidytext]; }; + bibliometrix = derive2 { name="bibliometrix"; version="3.2.1"; sha256="1iar9v9isn8c445lj5g6wrznsy9xn7xmyik0km5c98hxjsibwfzx"; depends=[bibliometrixData dimensionsR dplyr DT factoextra FactoMineR forcats ggplot2 ggrepel igraph Matrix openxlsx plotly pubmedR RColorBrewer readr readxl rscopus shiny SnowballC stringdist stringr tidyr tidytext]; }; bibliometrixData = derive2 { name="bibliometrixData"; version="0.1.0"; sha256="0fdfgqsfiq3iacj4vb3bvx98waqzqxdsn2ds8wq86a30lm055d7n"; depends=[]; }; biblionetwork = derive2 { name="biblionetwork"; version="0.1.0"; sha256="0nhx9bk7r5l0bvj98clnmwf53ihghf48zai4nj6pcgr2rb69fvjj"; depends=[data_table Rdpack]; }; bibs = derive2 { name="bibs"; version="1.1.1"; sha256="0slxqhcm4fhdmr2dj1c31zs8sgl39267179nbc59jlpb0z77z2d6"; depends=[GIGrvg]; }; @@ -6524,6 +6535,7 @@ in with self; { bidask = derive2 { name="bidask"; version="0.1.1"; sha256="1xykrk993bq1diflwbw4340b2jsn51l962qgwm50rz6hrakjhn6q"; depends=[xts zoo]; }; bife = derive2 { name="bife"; version="0.7.1"; sha256="0d1hfzji3769nsa5xvlmn7sbn21igwx3aa7vxlcdn1b9ykh7fx76"; depends=[data_table Formula Rcpp RcppArmadillo]; }; bifurcatingr = derive2 { name="bifurcatingr"; version="1.0.0"; sha256="0msbdr2m4xmvnd00yklk2b8c8qwr11d5gc1x22sqd16fgj9y0qvf"; depends=[igraph MASS]; }; + bigDM = derive2 { name="bigDM"; version="0.4.1"; sha256="147xqnrmdsg0p359idxwhjqzi68w03mbhzbggzcfrngf5pj5dbyn"; depends=[crayon future future_apply MASS Matrix RColorBrewer Rdpack rlist sf spatialreg spdep]; }; bigGP = derive2 { name="bigGP"; version="0.1-7"; sha256="0slg87g6lrdlzlcqxmcyxcwzrnmiz6ps0n14p27zcv0n687xifid"; depends=[Rmpi]; }; bigMap = derive2 { name="bigMap"; version="2.3.1"; sha256="08c9s5sk672j70d6pnva7z52i4s3knkby06lva9al9n8a3jiwsvz"; depends=[BH bigmemory colorspace RColorBrewer Rcpp RcppArmadillo]; }; bigQF = derive2 { name="bigQF"; version="1.6"; sha256="01qr1cw5v330kkddmgwk4fdlm6msnqcbx1kfzw390yfwq5pr84sy"; depends=[CompQuadForm coxme Matrix svd]; }; @@ -6536,10 +6548,10 @@ in with self; { bigchess = derive2 { name="bigchess"; version="1.9.1"; sha256="1vdzx185y1agh1xjf7qcfi2s6l7qzm1kx6b2kr3cbz2in88bws3n"; depends=[processx]; }; bigdatadist = derive2 { name="bigdatadist"; version="1.1"; sha256="16gkybwcp9sxqb0iic2fhmc4gndr44ayg14wrfcjvjaj4g5r6xs2"; depends=[FNN MASS pdist rrcov]; }; bigdist = derive2 { name="bigdist"; version="0.1.4"; sha256="1qfnmhyfadmnnagbhdl4jjrb53i1srszf19idp8fy6bczbjq85yi"; depends=[assertthat bigstatsr furrr proxy]; }; + biglasso = derive2 { name="biglasso"; version="1.5.1"; sha256="18f7xa1fdgp3xjf4ihwhrhg8pk2rg79zgk3fcwgh0nywv6zmsfb8"; depends=[BH bigmemory Matrix ncvreg Rcpp RcppArmadillo]; }; bigleaf = derive2 { name="bigleaf"; version="0.7.1"; sha256="0hsssz5973vapkmmh9dgzrijyjj1s75iarq3cpfi7ljm4n748qig"; depends=[robustbase solartime]; }; biglm = derive2 { name="biglm"; version="0.9-2.1"; sha256="0iy9xr2bq42wlizgwlz7w5kh9206yqkw9h2cr6mcsmizgjg3rkvd"; depends=[DBI]; }; biglmm = derive2 { name="biglmm"; version="0.9-2"; sha256="1zj1h2hszps3w913j2dk4cyj5jsqkkxsm3pcjlc4jnq810j100l6"; depends=[DBI]; }; - bigmatch = derive2 { name="bigmatch"; version="0.6.2"; sha256="16nmc0n78gzk8x8jhxdilj47gjqqv46sgiivccn5zkv08k1h3jj2"; depends=[liqueueR mvnfast plyr rcbalance]; }; bigmds = derive2 { name="bigmds"; version="2.0.1"; sha256="05sph85z4c4fiwd429hx9chgd7rsn48irr168yy1dj9daaqm49pl"; depends=[]; }; bigmemory = derive2 { name="bigmemory"; version="4.5.36"; sha256="03pg8mxdc7q0249visjmc8bc3xmwxsfg3i2n6higicj4cfz7zihq"; depends=[BH bigmemory_sri Rcpp]; }; bigmemory_sri = derive2 { name="bigmemory.sri"; version="0.1.3"; sha256="0mg14ilwdkd64q2ri9jdwnk7mp55dqim7xfifrs65sdsv1934h2m"; depends=[]; }; @@ -6548,8 +6560,8 @@ in with self; { bigreadr = derive2 { name="bigreadr"; version="0.2.4"; sha256="0650mbgbzl2582d02ma3kd8iqdimjajk9gnx70hdjl489q15w80f"; depends=[bigassertr data_table parallelly Rcpp]; }; bigrquery = derive2 { name="bigrquery"; version="1.4.0"; sha256="02msq61l7vamzpvbhvalh3qil1aa7pr68pwpsivbb6pvz6p4zyns"; depends=[assertthat bit64 curl DBI gargle glue httr jsonlite lifecycle prettyunits progress rapidjsonr Rcpp rlang tibble]; }; bigsimr = derive2 { name="bigsimr"; version="0.11.2"; sha256="1mygsc865hki6z2bilvbnymk8r4p73ams7iah9qpqi0ap6cqqz8p"; depends=[JuliaCall]; }; - bigsnpr = derive2 { name="bigsnpr"; version="1.8.1"; sha256="1kwzphhhc3rmczv426sz67hsyfp67mbrhgna406fvw50p7ql76d8"; depends=[bigassertr bigparallelr bigreadr bigsparser bigstatsr bigutilsr data_table foreach ggplot2 magrittr Matrix Rcpp RcppArmadillo rmio vctrs]; }; - bigsparser = derive2 { name="bigsparser"; version="0.5.0"; sha256="0g6fbhgc51jb2rnccimnsz3y0ivq9ylgk1rnm863l4hyc43balhp"; depends=[bigassertr Rcpp RcppEigen rmio]; }; + bigsnpr = derive2 { name="bigsnpr"; version="1.9.11"; sha256="01ldd86mvavqidmdmd6hzsbrds34ygndys9s3pf9l8cxjr58r2az"; depends=[bigassertr bigparallelr bigreadr bigsparser bigstatsr bigutilsr data_table foreach ggplot2 magrittr Matrix Rcpp RcppArmadillo rmio vctrs]; }; + bigsparser = derive2 { name="bigsparser"; version="0.6.0"; sha256="1v4jyxgz2ikjp7l91klrbshg93d644343y2qswsr5cbmnvc4fa3d"; depends=[bigassertr Rcpp RcppEigen rmio]; }; bigsplines = derive2 { name="bigsplines"; version="1.1-1"; sha256="1kf04p2lglzdi1fdryk27nmj2a2jca2ii7ki8vak93sq21isb179"; depends=[quadprog]; }; bigstatsr = derive2 { name="bigstatsr"; version="1.5.6"; sha256="1mir9fr2c9wrx0ldmwliv99z2qrpy8fij1bzjy40pzcaim9mfk7d"; depends=[bigassertr bigparallelr cowplot foreach ggplot2 ps Rcpp RcppArmadillo rmio RSpectra tibble]; }; bigstep = derive2 { name="bigstep"; version="1.0.3"; sha256="0ygp1vljqqn5vzpjxlv9d6fxxv3bi2kfyqfs1gf0jgxwb9417b82"; depends=[bigmemory magrittr matrixStats R_utils RcppEigen speedglm]; }; @@ -6563,7 +6575,7 @@ in with self; { billboard = derive2 { name="billboard"; version="0.1.0"; sha256="1z3y8dijhc1381y91n5zq305xzm1gpvs0g4mdpfr7zrblpa8ws39"; depends=[tibble]; }; billboarder = derive2 { name="billboarder"; version="0.3.1"; sha256="189ngvg84rcwhrivxskmjv3srhadvzr4p1v8pf11axyv2qn01b0x"; depends=[ggplot2 htmltools htmlwidgets jsonlite magrittr rlang scales shiny]; }; bimetallic = derive2 { name="bimetallic"; version="1.0"; sha256="181qi4dr0zc7x6wziq7jdc1his20jmprfpq3hrfm56fr5n1sj8wl"; depends=[]; }; - bimets = derive2 { name="bimets"; version="2.0.1"; sha256="08z3zvp8p0g9w2jzcnwd8qamdqfxahv4gl7k2lv5hl15f67mc3hf"; depends=[xts zoo]; }; + bimets = derive2 { name="bimets"; version="2.0.2"; sha256="0ch83l0g5zalbwxj0682yak99mlfba2i0lnmb44g74dcsism6psg"; depends=[xts zoo]; }; bimixt = derive2 { name="bimixt"; version="1.0"; sha256="0nhszpzjqy8z3vngl5jdzqxzshnn92wgi0ci5n3n5kzi24xkfrzc"; depends=[pROC]; }; binGroup = derive2 { name="binGroup"; version="2.2-1"; sha256="0cb7j6b0s3y56mv1967awwri0kv0rf3sr3vwf9gc2zbjggxi9ffp"; depends=[partitions Rdpack]; }; binGroup2 = derive2 { name="binGroup2"; version="1.1.0"; sha256="1hgz1w0bxbd82rx96s6b63wjczsb1x2l6j526wcnwix36kibv3p3"; depends=[ggplot2 partitions rBeta2009 Rcpp RcppArmadillo Rdpack scales]; }; @@ -6599,9 +6611,9 @@ in with self; { bioOED = derive2 { name="bioOED"; version="0.2.1"; sha256="0wx58bngpzlrbbcnx8l1lqhsg51y98wcym1238p87drf64x2mj1n"; depends=[bioinactivation corrplot dplyr FME ggplot2 MEIGOR rlang tidyr tidyselect tidyverse]; }; bioPN = derive2 { name="bioPN"; version="1.2.0"; sha256="0mvqgsfc7d4h6npgg728chyp5jcsf49xhnq8cgjxfzmdayr1fwr8"; depends=[]; }; bioRad = derive2 { name="bioRad"; version="0.5.2"; sha256="1kx1vh6p37170f1crylwyzap0c7s5d82rx7qqi95f8d26niqcjn9"; depends=[assertthat curl data_table fields ggmap ggplot2 lubridate lutz maptools raster rgdal rhdf5 sp tidyr viridis viridisLite]; }; - bioacoustics = derive2 { name="bioacoustics"; version="0.2.7"; sha256="0jsvmx4kx1jx4ljrrax9v3nr3fs2r0kg4n1a0qbwcbfbgykqng87"; depends=[htmltools moments Rcpp stringr tuneR]; }; + bioacoustics = derive2 { name="bioacoustics"; version="0.2.8"; sha256="08qhxx7xgswjamrgg82pkg1f7w50dx9ln67d50n1p3rvrxab4061"; depends=[htmltools moments Rcpp stringr tuneR]; }; bioassays = derive2 { name="bioassays"; version="1.0.1"; sha256="1y32wxkv14l7r0f35y4hxxxh3zpw2gd4hsjmkajhmzmnvg5jdw78"; depends=[dplyr ggplot2 magrittr nplr reshape2 rlang]; }; - bioclim = derive2 { name="bioclim"; version="0.1.0"; sha256="0v1bpcfhpw0hrvc2fl5l4dgjyyhgm4ypaqg2dy9nwb0di6pxd1qn"; depends=[berryFunctions ggplot2 reshape2 rmarkdown terra]; }; + bioclim = derive2 { name="bioclim"; version="0.2.0"; sha256="101ykpwvjgn62hqvsdh0mhwivv7iv23y57v65c85bk054y7wv6nq"; depends=[berryFunctions ggplot2 reshape2 rmarkdown terra]; }; biocompute = derive2 { name="biocompute"; version="1.1.0"; sha256="05pqrm1j0d21w70jnsf9zvh55h85i676xwvqzsk51llw52v16d4d"; depends=[cli crayon curl digest httr jsonlite jsonvalidate magrittr rmarkdown stringr uuid yaml]; }; biodosetools = derive2 { name="biodosetools"; version="3.6.0"; sha256="06i6vg0n98x91j8mkh0mbh4m7a34ghr22x6msrhdig0xh522ia5z"; depends=[bsplus cli config dplyr ggplot2 golem htmltools magrittr MASS maxLik mixtools msm pkgload rhandsontable rlang rmarkdown shiny shinydashboard shinyWidgets tidyr]; }; biogas = derive2 { name="biogas"; version="1.23.2"; sha256="05g6nyi872skvr34kw5c71ggnnjc3fv95imc327yjqhmqmwx3m19"; depends=[]; }; @@ -6612,7 +6624,7 @@ in with self; { bioinactivation = derive2 { name="bioinactivation"; version="1.2.3"; sha256="0gz1bbakf6b23jsbvrr8314yxajxcr1akm5srgm883lrf1p5ax13"; depends=[deSolve dplyr FME ggplot2 lazyeval MASS purrr rlang]; }; biokNN = derive2 { name="biokNN"; version="0.1.0"; sha256="113lynbxmv88ycvbsq9drn2f75md7yajhicfw8qd8l6lawiq1fqc"; depends=[cluster desc dplyr ggplot2 lme4 magrittr mice mitml tidyr]; }; biolink = derive2 { name="biolink"; version="0.1.7"; sha256="1i9aisvb3lvljird89fy9fx7h3s1wi6dpilycbynqyhz8xqnnszj"; depends=[DBI glue memoise rentrez RMySQL xml2]; }; - biomartr = derive2 { name="biomartr"; version="0.9.2"; sha256="12bw15hvjg7fbrq1mwn2xgzbplydy8rlq982hs118mlwdrlqb06q"; depends=[biomaRt Biostrings curl data_table downloader dplyr fs httr jsonlite philentropy purrr R_utils RCurl readr stringr tibble XML]; }; + biomartr = derive2 { name="biomartr"; version="1.0.2"; sha256="0hr7wks88lbfcqzjzm4x265dk4lpmc3i2ndp7xcrx8ssj76wrmkz"; depends=[biomaRt Biostrings curl data_table downloader dplyr fs httr jsonlite philentropy purrr R_utils RCurl readr stringr tibble withr XML]; }; biometryassist = derive2 { name="biometryassist"; version="1.0.0"; sha256="1lh2bjagab644j68dwfk6q88nmb1rvclqi87mxb1cwx6y7mjyr69"; depends=[agricolae cowplot curl ellipsis farver ggplot2 interp lattice multcompView predictmeans rlang scales stringi withr]; }; biomod2 = derive2 { name="biomod2"; version="3.5.1"; sha256="065cq36phf7ncd1na440f50aa467qbwkb7pchabsan05k3zk7v9h"; depends=[abind caret checkmate dismo doParallel dplyr earth ENMeval foreach gbm ggplot2 lattice MASS maxnet mda nnet PresenceAbsence pROC purrr randomForest raster rasterVis reshape rlang rpart sp tidyr]; }; bionetdata = derive2 { name="bionetdata"; version="1.0.1"; sha256="1l362zxgcvxln47b1vc46ad6ww8ibwhqr2myxnz1dnk2a8nj7r2q"; depends=[]; }; @@ -6627,7 +6639,7 @@ in with self; { biotools = derive2 { name="biotools"; version="4.2"; sha256="1dyy9mk2afjbc8g1qygy6h1aksbhndm53c4sb5mfzriydl03ibxv"; depends=[boot MASS]; }; bipartite = derive2 { name="bipartite"; version="2.16"; sha256="10flnwgsll86w1dgn4rswbshag8l35hski0nf7xkvp5fj39sy4wp"; depends=[fields igraph MASS permute sna vegan]; }; bipartiteD3 = derive2 { name="bipartiteD3"; version="0.3.0"; sha256="1b4nw1hqw645j8blf2b1hhnar7ffc4bw0zb07ycfjqd2prnif8pd"; depends=[downloader dplyr purrr r2d3 RColorBrewer stringr tibble tidyr]; }; - bipd = derive2 { name="bipd"; version="0.1"; sha256="14b6hx5l4xwicf7lvqm7p0ghb4ibsxwyxddg98bkkhsbg7rpdczq"; depends=[coda dplyr mvtnorm rjags]; }; + bipd = derive2 { name="bipd"; version="0.2"; sha256="0lm6yi4xnpl1vrai75jb8958mqwzilp42vik7z282g6p4ggx4ka8"; depends=[coda dplyr mvtnorm rjags]; }; biplotbootGUI = derive2 { name="biplotbootGUI"; version="1.2"; sha256="07lrs2n6s54h97vjriszszhksdbi14s2i234kwfhg7aq47k6l0jl"; depends=[cluster dendroextras MASS matlib rgl shapes tcltk2 tkrplot]; }; birankr = derive2 { name="birankr"; version="1.0.1"; sha256="1azgrzgw5bnfac8p287ir5zl6kxc6jij20p6cfc3lbbl03f8sa1k"; depends=[data_table Matrix]; }; birdring = derive2 { name="birdring"; version="1.4"; sha256="0rskrf0r5nrzfcac0zvc60vabvs9dws2zx1rxssvw6xmwyiiy1z6"; depends=[geosphere ks lazyData raster rgdal rgeos rworldmap rworldxtra sp]; }; @@ -6651,9 +6663,10 @@ in with self; { biwavelet = derive2 { name="biwavelet"; version="0.20.21"; sha256="0v7arwmng2i22svj836i57q8by9x5pghjv7d35g7r35wakrm8jyx"; depends=[fields foreach Rcpp]; }; biwt = derive2 { name="biwt"; version="1.0"; sha256="1mb3x8ky3x8j4n8d859i7byyjyfzq035i674b2dmdca6mn7paa14"; depends=[MASS rrcov]; }; bizdays = derive2 { name="bizdays"; version="1.0.9"; sha256="1ddl7mnxf5prvcmkdfmfhvxrcv8c7clm21qvmr54gwqf759afh07"; depends=[jsonlite]; }; + bizicount = derive2 { name="bizicount"; version="1.0.0"; sha256="1h11cxl56j5mzdjrsb9x7csxad33xx4rd0sgvz3dbd759nbmi9am"; depends=[DHARMa Formula MASS numDeriv pbivnorm rlang texreg]; }; bjscrapeR = derive2 { name="bjscrapeR"; version="0.1.0"; sha256="18chbgiwify272iqf0w4vsqh73wbk12d8m2awc5hbnfqblz3phwd"; depends=[dplyr glue readr tibble]; }; - bkmr = derive2 { name="bkmr"; version="0.2.0"; sha256="0dk6dn73bqlvwinn3aginls4533931xcr3h59k0w60yxs3v8yakv"; depends=[dplyr fields magrittr MASS nlme tidyr tmvtnorm truncnorm]; }; - bkmrhat = derive2 { name="bkmrhat"; version="1.1.1"; sha256="0mak91p8vrvmqscghqgpzwcrxn7mm9km6wks1lrwixivlq0g1cdj"; depends=[bkmr coda data_table future rstan]; }; + bkmr = derive2 { name="bkmr"; version="0.2.1"; sha256="0606i94lkici73g86xap142xkgrxk5pjid8c6rybjqqz9vqz48cv"; depends=[dplyr fields magrittr MASS nlme tidyr tmvtnorm truncnorm]; }; + bkmrhat = derive2 { name="bkmrhat"; version="1.1.2"; sha256="0wd8n9lwrrgs2mdxbhyx3sq5xkc7ifvbcwf260m8jgpblp9nn2yz"; depends=[bkmr coda data_table future rstan]; }; blackbox = derive2 { name="blackbox"; version="1.1.32"; sha256="180y19ls0vdk98smhs9hxpcwg3hwpl62d19zdiml38bjlxmr0kav"; depends=[foreach geometry lattice MASS nloptr numDeriv pbapply proxy rcdd Rcpp RcppEigen spaMM]; }; blaise = derive2 { name="blaise"; version="1.3.8"; sha256="1jvjli349rzyiij80ggb27fsqp0hd1fz2pw93rj6cssgipl911xl"; depends=[dplyr readr stringr tibble]; }; blandr = derive2 { name="blandr"; version="0.5.1"; sha256="1rqas71hlf000b3z824d8ljshf8bx91bbrzaxxnx5n3chv19w6z6"; depends=[ggplot2 jmvcore knitr R6 rmarkdown stringr]; }; @@ -6667,7 +6680,7 @@ in with self; { blin = derive2 { name="blin"; version="0.0.1"; sha256="1h94azm7gli9i4v3li5c1p36p3rkcj2p5j6rqzlzf0pcqs0bsc09"; depends=[abind glmnet MASS Matrix mvtnorm]; }; blindrecalc = derive2 { name="blindrecalc"; version="0.1.3"; sha256="1kaia4mpwjh9p0m9jc694i2gy1hfqa3k04w17cnmwsfppgwq11ls"; depends=[Rcpp]; }; blink = derive2 { name="blink"; version="1.1.0"; sha256="053nw592sglzh6fgz7hj8ra6q7lqs83hhv14kcgs67b56q8a3crb"; depends=[plyr stringdist]; }; - bliss = derive2 { name="bliss"; version="1.0.3"; sha256="0bzb4cybck466va4jhchwkf41z1ijzbsdp5pmkpnlxkv7kkcyfcl"; depends=[MASS Rcpp RcppArmadillo rockchalk]; }; + bliss = derive2 { name="bliss"; version="1.0.4"; sha256="02kln40z10wngydn7y4x5shd2dff74gb340nhagf49k8ql9p78xw"; depends=[MASS Rcpp RcppArmadillo]; }; blm = derive2 { name="blm"; version="2013.2.4.4"; sha256="1w6c30cq38j4i1q4hjg12l70mhy5viw886l1lsnxyvniy113in4i"; depends=[]; }; blme = derive2 { name="blme"; version="1.0-5"; sha256="0413j7gwr5yj14jamkizj55q7xii1a0kgazzj0ilqn2ascclz6k7"; depends=[lme4]; }; blmeco = derive2 { name="blmeco"; version="1.4"; sha256="1370djpy87816bfr0g8730x7q4d4xx9aa41iqm622q5b5zm2jzmp"; depends=[arm lme4 MASS]; }; @@ -6676,18 +6689,18 @@ in with self; { blockForest = derive2 { name="blockForest"; version="0.2.4"; sha256="14xggdm34hmdlz3hvvp5layk6mb016yppqf9x9rbia9lmmjbhgfh"; depends=[Matrix Rcpp RcppEigen survival]; }; blockRAR = derive2 { name="blockRAR"; version="1.0.2"; sha256="1d9izlcgz85kcz1sh11mcxq96qh0cwv6638jha851h2f4lnc8aa4"; depends=[arm dplyr ldbounds magrittr tibble]; }; blockcluster = derive2 { name="blockcluster"; version="4.5.1"; sha256="1f152m3fv0aaw2csgqvf1y231f5rjhwrkn69yyx9yb3ff65z49d8"; depends=[Rcpp rtkore]; }; - blocklength = derive2 { name="blocklength"; version="0.1.4"; sha256="13hsk15r2m2rnmdjs1apz6bhpm877pkc0rph2lvwgpm85ki0rr7z"; depends=[tseries]; }; + blocklength = derive2 { name="blocklength"; version="0.1.5"; sha256="06d62hgkf2pphr6h3nba1b5r0izr45bvmrymrzq0lyc7xiwrh6na"; depends=[tseries]; }; blockmatrix = derive2 { name="blockmatrix"; version="1.0"; sha256="14k69ly4i8pb8z59005kaf5rpv611kk1mk96q6piyn1gz1s6sk6r"; depends=[]; }; blockmodeling = derive2 { name="blockmodeling"; version="1.0.5"; sha256="1vc8gy4slsywcwxq532373i0dq73fhs5cac9mr6zz2pjaaxjghhq"; depends=[Matrix]; }; blockmodels = derive2 { name="blockmodels"; version="1.1.5"; sha256="1h2g13yp8xhkw9icl5bi1nkc0qfqkqhlhdqbcsp0246g9amssci9"; depends=[digest Rcpp RcppArmadillo]; }; blockrand = derive2 { name="blockrand"; version="1.5"; sha256="0bic3b8l7mp2hpwd8k1diwy6a4lj92i7s5k20i2wy8kw0c74jwfh"; depends=[]; }; blocksdesign = derive2 { name="blocksdesign"; version="4.9"; sha256="1kr3fxs8vgc96clhx5ml11jkwll1rg9gf16xg93q14jpg4hg0j9h"; depends=[plyr PolynomF]; }; - blogdown = derive2 { name="blogdown"; version="1.7"; sha256="0v3sxbq35azak6g4a7k6pq9z9qgx4yf138r1r5yl76grrq4k9gka"; depends=[bookdown htmltools httpuv jsonlite knitr later rmarkdown servr xfun yaml]; }; + blogdown = derive2 { name="blogdown"; version="1.8"; sha256="05rzxwap8i7h5ijy04322cyim6kxhdhgq8y8nvp9q9gq3183bmrs"; depends=[bookdown htmltools httpuv jsonlite knitr later rmarkdown servr xfun yaml]; }; blorr = derive2 { name="blorr"; version="0.3.0"; sha256="1ynvg6ar7c7p01225q9czy4gxks0p1vw3sx207l7vzqxw20wb1bn"; depends=[car data_table ggplot2 gridExtra lest Rcpp]; }; blrm = derive2 { name="blrm"; version="1.0-1"; sha256="0p0nmbxil4l89fcryrgsg9mxzb5fyg93p50aqkjy00ms05hwd0hx"; depends=[boot mvtnorm openxlsx reshape2 rjags]; }; blsR = derive2 { name="blsR"; version="0.2.1"; sha256="0wbcpvgj72fkhv4z1gllf9lkq45mdwwnf8dnmaqwl9i5qnihy1yy"; depends=[dplyr httr jsonlite purrr rlang]; }; bltm = derive2 { name="bltm"; version="0.1.0"; sha256="1sx4ii65ddvdw45za8j320v1s9d1pz5k2gx979yymhyxi8fmq69z"; depends=[mvnfast Rfast]; }; - bmabasket = derive2 { name="bmabasket"; version="0.1.1"; sha256="1hgbl1x38snhzbh5j1qz81azkdwzmm4idacyyyrn895vl71ypfrn"; depends=[partitions Rcpp RcppArmadillo]; }; + bmabasket = derive2 { name="bmabasket"; version="0.1.2"; sha256="0w8y992ylyg0cyz1lfqll96fivng13lvxp0mhyb48flfnkg8rcdd"; depends=[partitions Rcpp RcppArmadillo]; }; bmass = derive2 { name="bmass"; version="1.0.3"; sha256="0dafixd996lamn5kfbqpiawblalhyw1gi394j46n2sij2r209d76"; depends=[]; }; bmem = derive2 { name="bmem"; version="1.8"; sha256="1nhybz8aarzlqjx4443hsflflgy2jcprz5dv6mwxacnyspm93vlq"; depends=[Amelia lavaan MASS sem snowfall]; }; bmgarch = derive2 { name="bmgarch"; version="1.1.0"; sha256="1r7hlc5d8jmk7sy7wv9yrilhla57vi9ar21dhmvfakms2z7gyg9d"; depends=[BH forecast ggplot2 loo MASS Rcpp RcppEigen RcppParallel Rdpack rstan rstantools StanHeaders]; }; @@ -6714,13 +6727,13 @@ in with self; { bnviewer = derive2 { name="bnviewer"; version="0.1.6"; sha256="036jmypxg2ciiz388f90vm73l9djhpi6gzp1ibn9l0x3d072r7zz"; depends=[assertthat bnlearn caret e1071 igraph shiny visNetwork]; }; boa = derive2 { name="boa"; version="1.1.8-2"; sha256="04lhqk5qfvaz1jk90glr2yi5vq7cdy0w8m6g2lnzk359l9y41zhp"; depends=[]; }; bodenmiller = derive2 { name="bodenmiller"; version="0.1.1"; sha256="0rdbk3f95iw4352fl9d81ir503q072chbb4hn1k12sp1wjc3apid"; depends=[]; }; + bodycomp = derive2 { name="bodycomp"; version="0.1.0"; sha256="1fzw8g1dxvigknx8s6kd05z13p7ak0941y9bqzklgsfm9afiaj4d"; depends=[]; }; boilerpipeR = derive2 { name="boilerpipeR"; version="1.3.2"; sha256="1dws84ghc5r6zpnr23qd4l9bkazds8ar723wkrkikjni58vshjf1"; depends=[rJava]; }; bolasso = derive2 { name="bolasso"; version="0.1.0"; sha256="1radw0h1y1gq0lzfrdh2phnvbrxzlklm7hhbz6x4xpw6vybwbp1j"; depends=[future_apply gamlr ggplot2 glmnet Matrix progressr Rdpack tibble]; }; bold = derive2 { name="bold"; version="1.2.0"; sha256="0r54ylxgmq9qnh1f36k4hafh80n86ibk4a994f8b1rnb9bq9f5cg"; depends=[crul data_table jsonlite plyr reshape stringr tibble xml2]; }; bookdown = derive2 { name="bookdown"; version="0.24"; sha256="1qqvvfbpbd6sin8vpvr3zzlhlyx1i6b98yp77xj5zl220nid5slb"; depends=[htmltools jquerylib knitr rmarkdown tinytex xfun yaml]; }; bookdownplus = derive2 { name="bookdownplus"; version="1.5.8"; sha256="1cdxz5c69cgdk7wxr0xwhzw361rpg7j8xjv9hjf1877qqmhxbrkd"; depends=[bookdown knitr magick xaringan]; }; boomer = derive2 { name="boomer"; version="0.1.0"; sha256="0nb58msk7ycim15ssjwig9i62x51ydnakq83jg6vcbqjg1a9anry"; depends=[crayon pryr rlang rstudioapi styler withr]; }; - boostmtree = derive2 { name="boostmtree"; version="1.5.0"; sha256="18w5h8m6g4aszffyn0ixhzn2bgbrwrrcq2k54b70vbw00xqxmg1q"; depends=[nlme randomForestSRC]; }; boot = derive2 { name="boot"; version="1.3-28"; sha256="0cjafhqv1c1mrjjcasqr767vs96wjcc6am9r1icryr8l4zymhwcz"; depends=[]; }; boot_heterogeneity = derive2 { name="boot.heterogeneity"; version="1.1.5"; sha256="0g4zkvx8krqh54xvjh1a0ybwl3v5bg3l670ycgnps8kkw32w5p1f"; depends=[HSAUR3 knitr metafor pbmcapply rmarkdown]; }; boot_pval = derive2 { name="boot.pval"; version="0.4"; sha256="05gxpky92f9jhvhv4faj49ql8a9mrfqdgk802i0hdw4lmnn90k7j"; depends=[boot car lme4 Rdpack survival]; }; @@ -6731,13 +6744,12 @@ in with self; { bootLR = derive2 { name="bootLR"; version="1.0.2"; sha256="1aj5l42d5y7czxzlg6r9ykdxyjf8m8bahl41xk4k6xpxckdnka14"; depends=[binom boot]; }; bootPLS = derive2 { name="bootPLS"; version="0.9.9"; sha256="1i0bzykwjimyswb0z23sqbhm98b9lxifnkby682khva7yfk7k8qr"; depends=[bipartite boot doParallel foreach mvtnorm pls plsRglm spls]; }; bootSVD = derive2 { name="bootSVD"; version="1.1"; sha256="16d3qv8vzhfvl9vbfglkb3csmc4npb29jcq9apv89hj7bkcapvi9"; depends=[ff]; }; - bootStepAIC = derive2 { name="bootStepAIC"; version="1.2-0"; sha256="0p6v4zjsaj1p6c678010fazdh40lpv0rvhczd1halj8aic98avdx"; depends=[MASS]; }; + bootStepAIC = derive2 { name="bootStepAIC"; version="1.3-0"; sha256="1dmziq6yfycpap4hhlzl3xg2hsx4y135hy7r6qh9p98vxpa6mycl"; depends=[MASS]; }; bootUR = derive2 { name="bootUR"; version="0.4.2"; sha256="1vf6qynakcil8sz161c8jvkg7c5b5qmkzmsgd5vhp3yrjf1wbhf7"; depends=[parallelly Rcpp RcppArmadillo RcppParallel RcppThread urca]; }; bootcluster = derive2 { name="bootcluster"; version="0.3.2"; sha256="0wkc9li0hqgns7pz72fby187q81yzrgl62qs8w5llayghf8lhaml"; depends=[cluster doParallel dplyr flexclust foreach fpc GGally ggplot2 gridExtra igraph intergraph mclust network plyr sna]; }; bootf2 = derive2 { name="bootf2"; version="0.4.1"; sha256="17wrl678x9mb5pny2vwrr6sdl2hsqr1nbjzsizp2q6l3w5m6s152"; depends=[ggplot2 MASS minpack_lm readxl]; }; bootnet = derive2 { name="bootnet"; version="1.5"; sha256="13pfmr259yikkb3y9438xz4bjn6kx5w5d2jhx441a00rvv1kb3hi"; depends=[abind corpcor dplyr ggplot2 gtools igraph IsingFit IsingSampler Matrix mgm mvtnorm NetworkToolbox networktools pbapply qgraph rlang snow tibble tidyr]; }; bootruin = derive2 { name="bootruin"; version="1.2-4"; sha256="1gbvh99snchipf13kjhymcx60s2kni23y7lv8lhzd3d402grp68h"; depends=[]; }; - bootsPLS = derive2 { name="bootsPLS"; version="1.1.2"; sha256="19ikz3l0qds25hgcxvhsvqy6jyshcdvnxw6774ifl9ylngxvlfh0"; depends=[mixOmics]; }; bootspecdens = derive2 { name="bootspecdens"; version="3.0"; sha256="0hnxhfsc3ac4153lrjlxan8xi4sg1glwb5947ps6pkkyhixm0kc1"; depends=[MASS]; }; bootstrap = derive2 { name="bootstrap"; version="2019.6"; sha256="1546jqhhw5h177ii8jkdikyd26rv6gwkav816np1zks4p7zgsljj"; depends=[]; }; bootstrapFP = derive2 { name="bootstrapFP"; version="0.4.4"; sha256="1j9ag18s2n7cihs5hbjhibx8gikxf8fs5hx2ljfzcn0gv492qm02"; depends=[sampling]; }; @@ -6782,6 +6794,7 @@ in with self; { bread = derive2 { name="bread"; version="0.1.7"; sha256="1ynf27ibj5ahnkk09xpk75wf43y3z4321kx31k0964y17pxf1ksk"; depends=[data_table dplyr stringr]; }; breakDown = derive2 { name="breakDown"; version="0.2.1"; sha256="1jm9zmyfcnr9mjz7b30k34h47msvik9ngfysi6dc48gvrk41yk9q"; depends=[ggplot2]; }; breakage = derive2 { name="breakage"; version="1.1-1"; sha256="0zjazyz92criiimpz4wyd4hd8ccspvh3hhqpd4qkfdzdf9wp3kns"; depends=[Imap]; }; + breakaway = derive2 { name="breakaway"; version="4.7.9"; sha256="149n30lxkyh9qapm9xfarxbrxlp2fkar437ndajryq8m4i39w08i"; depends=[ggplot2 lme4 magrittr MASS phyloseq tibble]; }; breakfast = derive2 { name="breakfast"; version="2.2"; sha256="1bdzi0czhjwiqid6xz1b10p9wqy051sy5jhxnwzh9bxzh94a79lk"; depends=[ggplot2 plyr Rcpp]; }; breakpoint = derive2 { name="breakpoint"; version="1.2"; sha256="004vi1qr7iib8ykg6sp7xzv0bb841h4vsz2x0cyrhkdp41frglx9"; depends=[doParallel foreach ggplot2 MASS msm]; }; breathtestcore = derive2 { name="breathtestcore"; version="0.8.1"; sha256="1cdv3qc5bydpchw2qz8wgqsc1hjn0q97bsk05gm8s0xfxmkfn3jb"; depends=[assertthat broom dplyr ggfittext ggplot2 MASS multcomp nlme purrr readr readxl signal stringr tibble tidyr xml2]; }; @@ -6791,7 +6804,7 @@ in with self; { brglm2 = derive2 { name="brglm2"; version="0.8.2"; sha256="065ldmbagarhipl6hl25rlpcnp7c3h1adadyq2wgx0g09hq5ibjf"; depends=[enrichwith MASS Matrix nnet numDeriv]; }; briKmeans = derive2 { name="briKmeans"; version="0.1"; sha256="026wga5lqr8i6zxi8jnw466d40r9qf1blb7l331h9vaj2j169iax"; depends=[boot cluster depthTools]; }; brickr = derive2 { name="brickr"; version="0.3.5"; sha256="1a6yxhq2zly3i3gs4dd19xhyrin1qaxdr7x3a887j7zbcj0j4z9q"; depends=[colorspace dplyr farver ggplot2 magrittr purrr rgl scales tidyr]; }; - bridgedist = derive2 { name="bridgedist"; version="0.1.0"; sha256="0hqkpwpi3nv6mfhljl65zcflf4wy72ag36hdam6s7kynfj41qz6w"; depends=[]; }; + bridgedist = derive2 { name="bridgedist"; version="0.1.1"; sha256="1jvjfbk4p5n02xx74bis0z9nzpbn8c5in9qlfr2wpwfqdplprxhl"; depends=[]; }; bridger = derive2 { name="bridger"; version="0.1.0"; sha256="1rx16zwa3zz4bs7h0b75vsx78dvkif8d9c7prb5pmwccizll7v53"; depends=[cowplot dplyr ggedit ggplot2 glue gridExtra kableExtra magrittr patchwork pdftools scales stringr tibble tidyr]; }; bridger2 = derive2 { name="bridger2"; version="0.1.0"; sha256="0clp42nnbvd01n65azdi2ghp0mfqwsipzdl2d30q04lcvfkdpxrf"; depends=[BSDA data_table ggplot2 outliers plotly shiny shinydashboard]; }; bridgesampling = derive2 { name="bridgesampling"; version="1.1-2"; sha256="0sry1xwiv4y52k44hq6z8y2kysp5kxgl4dix3m94svg3ladd7v2l"; depends=[Brobdingnag coda Matrix mvtnorm scales stringr]; }; @@ -6814,9 +6827,8 @@ in with self; { brotli = derive2 { name="brotli"; version="1.2"; sha256="07rgdgxh9bvn0qavpclxmkglwyl6ndqasxcs6j12if698dkn976b"; depends=[]; }; brr = derive2 { name="brr"; version="1.0.0"; sha256="050ivnqcaxiyypd1sxfpy6ianhzzmvs6c77ga40g3440cvfigkgw"; depends=[gsl hypergeo pander stringr SuppDists TeachingDemos]; }; brranching = derive2 { name="brranching"; version="0.7.0"; sha256="06jy3qhbr0v4m1j4j8a7fb7ic59sx4zhlsm1yb3g6rdwc00d67wj"; depends=[ape conditionz crul curl phylocomr phytools taxize]; }; - bruceR = derive2 { name="bruceR"; version="0.8.3"; sha256="0q7amdl5imb9mm6fpa0ckjl0jxjwrvy7cc2fwv1jiv7197l7n2bf"; depends=[cowplot crayon data_table dplyr effectsize emmeans forcats ggplot2 ggtext glue interactions lavaan lmerTest mediation performance psych see stringr tidyr]; }; + bruceR = derive2 { name="bruceR"; version="0.8.5"; sha256="04x2mvp9w0fngsmsgcrs40km6k1ydji7j515cm5bs7xbfm6li8l4"; depends=[afex cowplot crayon data_table dplyr effectsize emmeans forcats ggplot2 ggtext glue interactions lavaan lmerTest mediation performance psych see stringr tidyr]; }; brulee = derive2 { name="brulee"; version="0.1.0"; sha256="18qglyb3s45rzdp2qxc582v9rpilgqf55cs3r7zyj423ik99sgf4"; depends=[cli coro dplyr generics ggplot2 glue hardhat rlang tibble torch]; }; - brunnermunzel = derive2 { name="brunnermunzel"; version="1.4.1"; sha256="1lba5cpiray65zg1pv3xv6yl1xg78rqlwxkcmhgizlh1rhpd430p"; depends=[]; }; brxx = derive2 { name="brxx"; version="0.1.2"; sha256="08qlfnf84k3yjcvr1wm6gd96mk26xf2gz59ychb3m981228hbbs6"; depends=[blavaan blme GPArotation MASS MCMCpack rstan TeachingDemos]; }; bs4Dash = derive2 { name="bs4Dash"; version="2.0.3"; sha256="17vpng0s0sr3bnaqq3d545s72zd5a7isdbvzh01148lzq0va710g"; depends=[bslib fresh htmltools httpuv httr jsonlite lifecycle shiny waiter]; }; bs4cards = derive2 { name="bs4cards"; version="0.1.1"; sha256="0fhjj3wjhxl263lhlbm5jw9l227a5k9cpannpankr5h8bkn1408h"; depends=[htmltools magrittr rlang]; }; @@ -6832,7 +6844,7 @@ in with self; { bsplus = derive2 { name="bsplus"; version="0.1.3"; sha256="1grn2i2xxq5fhkqb7lqsfhbfckr6i3ddy7mikgxz6lifk4rc4mxx"; depends=[glue htmltools jsonlite lubridate magrittr purrr rmarkdown stringr]; }; bspm = derive2 { name="bspm"; version="0.3.9"; sha256="1r0c0gnj0ps5cs9grwss7jxx5znywi80kng0rsb3dsmacwsfpkk1"; depends=[]; }; bspmma = derive2 { name="bspmma"; version="0.1-2"; sha256="1a3p1h7bks5yrxv791wfa680v4a6q10p59iz6wvfifhf3ndlaw49"; depends=[]; }; - bsreg = derive2 { name="bsreg"; version="0.0.1"; sha256="06kabvchg9jk9x6rgjlphnggpbfppzghqj7pw2nx1wizi2dw0sal"; depends=[Matrix R6]; }; + bsreg = derive2 { name="bsreg"; version="0.0.2"; sha256="13701llj5k7vssmgb4fvxswcf9bsc4pxjvh67znbsvrv5cmjh5x3"; depends=[Matrix R6]; }; bssm = derive2 { name="bssm"; version="2.0.0"; sha256="10gk0b235c3szll3g48w9r2iryc0hfx6chh9bvxhm5r0qsfigmla"; depends=[checkmate coda diagis dplyr magrittr posterior ramcmc Rcpp RcppArmadillo rlang sitmo tidyr]; }; bssn = derive2 { name="bssn"; version="1.0"; sha256="1brxbvcvqy8n9xpvp5kz47x5ps8hdqgnh6s49051qaylp95qm432"; depends=[ClusterR mvtnorm sn ssmn]; }; bst = derive2 { name="bst"; version="0.3-23"; sha256="1wx039cl8s1j1dwjg50ivn39fckkf8mzgrm953bg02w0p0fpz5bh"; depends=[doParallel foreach gbm rpart]; }; @@ -6857,7 +6869,7 @@ in with self; { bundesbank = derive2 { name="bundesbank"; version="0.1-9"; sha256="05sc6m2v8bfgdka7v28rxhq5a8c88gsxkv0zjk08rpw8k8zql0dk"; depends=[]; }; bundesligR = derive2 { name="bundesligR"; version="0.1.0"; sha256="0dnhbh9jh7dfbk7mfh8msq4ys5kakalr0kwkycycrb2q8rd049vp"; depends=[]; }; bupaR = derive2 { name="bupaR"; version="0.4.4"; sha256="0ysxvp9ksn00mghll62k0a2qgrqccvprn5zwywsp77rhfb97pfdg"; depends=[data_table dplyr eventdataR forcats glue lubridate magrittr miniUI purrr rlang shiny stringr tidyr]; }; - burnr = derive2 { name="burnr"; version="0.6.0"; sha256="1xpdd6nni3zca2mabrq1bkgiqlk67v6mn6ykfrx95h8afzjr4k1p"; depends=[forcats ggplot2 MASS plyr reshape2 rlang stringr tidyr]; }; + burnr = derive2 { name="burnr"; version="0.6.1"; sha256="0pgki4inyql8h10i78yzqm73jy2h7rdp9ywsk65virxaadpngy9c"; depends=[forcats ggplot2 MASS plyr reshape2 rlang stringr tidyr]; }; bursts = derive2 { name="bursts"; version="1.0-1"; sha256="172g09d1vmwl83xs6gr4gfblqmx3apvblpzdr5d7fcw1ybsx0kj6"; depends=[]; }; busdater = derive2 { name="busdater"; version="0.2.0"; sha256="0hib73zay9r7rv49zv1lx0l15jzjyli9f1vrk414l8apggvx4c6s"; depends=[lubridate]; }; butcher = derive2 { name="butcher"; version="0.1.5"; sha256="1yzp4zz2r9xwv2cxywwx2xmh9asnw0lyj15fix4h1ypadbxz68pd"; depends=[fs lobstr purrr rlang tibble usethis]; }; @@ -6872,16 +6884,16 @@ in with self; { bysykkel = derive2 { name="bysykkel"; version="0.3.1"; sha256="1lvqbax7dvli4265856f9667ckp9g5l4radz2cp0yk0slsjgsdpg"; depends=[glue httr jsonlite lubridate tibble]; }; bytescircle = derive2 { name="bytescircle"; version="1.1.2"; sha256="0786dkdww0qyhqr1di7pdcwrnymdcqq7kwrjalagykc41aa4jgza"; depends=[]; }; bzinb = derive2 { name="bzinb"; version="1.0.4"; sha256="1424lwsm2ra124h0ahbl42szbx500fqkf9ccw9k1688iwxnfg7f2"; depends=[BH Rcpp]; }; - c060 = derive2 { name="c060"; version="0.2-8"; sha256="1lazxvlgj340bvnx9h1ihnnrjm9rrq8j9qv6glpyvaw1dzb1a60m"; depends=[glmnet lattice mlegp penalizedSVM peperr survival tgp]; }; + c060 = derive2 { name="c060"; version="0.2-9"; sha256="0bcip5lydd3alll6c8r7i0avs92rxc14i40lhmbbg5nygif4h8dn"; depends=[glmnet lattice mlegp penalizedSVM peperr survival tgp]; }; c212 = derive2 { name="c212"; version="0.98"; sha256="0pzg239602iq56nhxfdvlk26z58lz6vvlbwsdpwhmich0by4gx4x"; depends=[coda]; }; c2c = derive2 { name="c2c"; version="0.1.0"; sha256="149np512wjnlr9glmqxpiamf6c31v0bh6ym95jpdhk0iw3ic9kvh"; depends=[]; }; c2d4u_tools = derive2 { name="c2d4u.tools"; version="1.2"; sha256="1ssp3sk5kml8in1ggnir77cq2kpmdmrhjblvw67ydxp22sqw7vwr"; depends=[]; }; c3 = derive2 { name="c3"; version="0.3.0"; sha256="1c2k7ml153bby749qi3a6nckhwwr71mvvps9dkbzkxkwnmlwpz1h"; depends=[data_table dplyr htmlwidgets jsonlite lazyeval viridis]; }; c3net = derive2 { name="c3net"; version="1.1.1"; sha256="0m4nvrs41kmlakc6m203zlncqwgj94wns8kzcb31xngjcacmcq42"; depends=[igraph]; }; cAIC4 = derive2 { name="cAIC4"; version="1.0"; sha256="1qg73g0g029wkzpmp0fgvyfz8p1k3x38yqx0404cpb3dxj4n4hcg"; depends=[lme4 Matrix mgcv mvtnorm nlme RLRsim]; }; - cIRT = derive2 { name="cIRT"; version="1.3.1"; sha256="1x7cbawzzpzripzyg4yavc9s6kx06ff4q151kbvylr9wsf78s6qg"; depends=[Rcpp RcppArmadillo]; }; + cIRT = derive2 { name="cIRT"; version="1.3.2"; sha256="1iwgxc1jl118j9yjhjix9f7dm75sj82iz7ic58g5625fxzdgnw25"; depends=[Rcpp RcppArmadillo]; }; cNORM = derive2 { name="cNORM"; version="2.1.0"; sha256="01iigvxl01h320yppnjlr46j7s2gz2g6yk00kfcr7b5zq8qzil2j"; depends=[lattice latticeExtra leaps]; }; - cOde = derive2 { name="cOde"; version="1.0.0"; sha256="12222wlsk9l6m9y477mjl8x279xhs8c1l1wsq92khwycm1j06jfy"; depends=[]; }; + cOde = derive2 { name="cOde"; version="1.1.1"; sha256="1h3bp97lqd1jvgnablhxdncmvbf5qwphqbs7xy3r31vpamslz77i"; depends=[]; }; cPCG = derive2 { name="cPCG"; version="1.0"; sha256="1pfbsv2rcjsryn6nr56a7i4yb7k0m3gdfn4q9l1kpzhmv9lic7m1"; depends=[Rcpp RcppArmadillo]; }; cPseudoMaRg = derive2 { name="cPseudoMaRg"; version="1.0.1"; sha256="1mf78pilhx4mqv8n0xrdzn9wkvhnb3bs7rill7n588f18bnjp9mh"; depends=[]; }; cRegulome = derive2 { name="cRegulome"; version="0.3.2"; sha256="0cvxad73l85zsgqmis5p24v71kkzi784b8v5z07f0dh9yp41p96q"; depends=[DBI ggplot2 ggridges httr igraph R_utils RSQLite UpSetR VennDiagram]; }; @@ -6889,12 +6901,12 @@ in with self; { ca = derive2 { name="ca"; version="0.71.1"; sha256="095lk7p2b9835hc3a03c4019wg0baf0dhz6c2vqpaq1m9k4jy304"; depends=[]; }; caMST = derive2 { name="caMST"; version="0.1.4"; sha256="0467xfwqx6jwj442rlzkgyry8lnhvbxdazfpsy3wyd2iidb9a2g4"; depends=[catR diagram mstR]; }; caROC = derive2 { name="caROC"; version="0.1.5"; sha256="0cklvzfg95yyr37hdfmrna2z6lnhf9f6rrqcjsba1wjmqs8abgsh"; depends=[quantreg RColorBrewer]; }; - caRamel = derive2 { name="caRamel"; version="1.2"; sha256="15w1p770cjsxs198rlc8fzs9m8a4pg5day2iya7xz0fkwb3xmm2z"; depends=[geometry]; }; + caRamel = derive2 { name="caRamel"; version="1.3"; sha256="0l83z74q1as4w33vqsbybyz2vkdqgw7y56jkw0s6f36mph8fdpf9"; depends=[geometry]; }; caRecall = derive2 { name="caRecall"; version="0.1.0"; sha256="1ml8cfsi4h8q5f0y3m6s5v8sdldj302ndl75m6f7lagsiiiwhd77"; depends=[httr jsonlite tibble]; }; caRpools = derive2 { name="caRpools"; version="0.83"; sha256="10m7fw1zfr9i6v2qg235diwf3fmfr88incxnqpvnhmqcn082mxrp"; depends=[biomaRt DESeq2 rmarkdown scatterplot3d seqinr sm VennDiagram xlsx]; }; caTools = derive2 { name="caTools"; version="1.18.2"; sha256="14q2ry8gaszjl0m97qg62dxv5bpj6k02qwyi7q2lnxgcmwai3mkm"; depends=[bitops]; }; cabinets = derive2 { name="cabinets"; version="0.6.0"; sha256="1pypn29v91zqncv5kxinfz0f633qmic7n87rf4amjrq83iiid6md"; depends=[cli crayon fs git2r glue R6 renv rstudioapi stringr]; }; - cabootcrs = derive2 { name="cabootcrs"; version="2.0"; sha256="1a473ca90306brhfrzf5hw6d6v252kd2vfwkvgblwy26jmrrr2km"; depends=[lpSolve]; }; + cabootcrs = derive2 { name="cabootcrs"; version="2.1.0"; sha256="0aqp8ip0s9raz4minhaw7vcn253xld4dgr957wsl2sp2nd8z66rq"; depends=[colorspace lpSolve]; }; cacIRT = derive2 { name="cacIRT"; version="1.4"; sha256="145j6isqa8yj2nvlqkxagd076zs10ng3n44khi5p4jj77fjc8gh6"; depends=[]; }; cache = derive2 { name="cache"; version="0.0.2"; sha256="0ffny3wbba755h6rs842z0hj5wyjhjin3b5lrxg09yqcjz03pll1"; depends=[cli digest here r_assert]; }; cachem = derive2 { name="cachem"; version="1.0.6"; sha256="0r0q5w8lsxak46crnkbi739qzys90hlw7cqqqhv99xzkpkvm554s"; depends=[fastmap rlang]; }; @@ -6911,21 +6923,23 @@ in with self; { calibrateBinary = derive2 { name="calibrateBinary"; version="0.1"; sha256="1k6sl4bg05piyczpk6wsva914gcmy8viyz4423gx9i6ddflb7xdb"; depends=[gelnet GPfit kernlab randtoolbox]; }; calibrator = derive2 { name="calibrator"; version="1.2-8"; sha256="1m9g1pmnr6d9jkg5ab0l0cbqfj7kmx7sdmcdqdhn9ifyhhn7812y"; depends=[cubature emulator mvtnorm]; }; callr = derive2 { name="callr"; version="3.7.0"; sha256="02inaf3c7b0hikii7p2zwaphrq5myv4in92d9jxd1ilmhla5awnn"; depends=[processx R6]; }; - calmate = derive2 { name="calmate"; version="0.12.1"; sha256="07sjbq7bcrhal52pdzsb5pfmk6a8a44wg8xn79sv4y5v74c5xaqz"; depends=[aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; + calmate = derive2 { name="calmate"; version="0.13.0"; sha256="17gfk3am8frj9pqx31pmjswm5nvca9nqbanl0qj4ypsr8wymix7w"; depends=[aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; }; calpassapi = derive2 { name="calpassapi"; version="0.0.3"; sha256="1vhx5h7ah75cs1mlw25x7hal90m47596kr7fx2pd8fslq7il7p1b"; depends=[digest dplyr httr jsonlite stringr]; }; campfin = derive2 { name="campfin"; version="1.0.8"; sha256="06shr4p4g3cwxs1iszpvpk83k2mss6za68fqkv5pjiz44pc89v80"; depends=[dplyr fs ggplot2 glue httr lubridate magrittr purrr readr rlang scales stringdist stringr tibble]; }; + campsis = derive2 { name="campsis"; version="1.2.0"; sha256="1nngm2g2j8q7kfa7pl11zg28mb8m9kyyc3lfxsldydm6vijlckv7"; depends=[assertthat campsismod dplyr ggplot2 MASS plyr purrr rlang tibble tidyr]; }; + campsismod = derive2 { name="campsismod"; version="0.8.0"; sha256="1h919ci4jnwi812grbi4wjl7r86142xvb83hbhjni3yl93k0627s"; depends=[assertthat dplyr magrittr plyr purrr readr]; }; camsRad = derive2 { name="camsRad"; version="0.3.0"; sha256="06gar6qan1ka01ngjvbpcv649yvfga697mplwn1x6qnfr4ngb7cs"; depends=[httr xml2]; }; camtrapR = derive2 { name="camtrapR"; version="2.0.3"; sha256="13zg8kx28il7rbyr2p3c1xdxx84b7shpcmgavzjqzh6wjm5bh5mh"; depends=[data_table overlap secr sp]; }; canadacovid = derive2 { name="canadacovid"; version="0.3.3"; sha256="1xgabz1klq4rgbs1wdffgyyq35kcs9giwc55g76kd7psnf2giclk"; depends=[dplyr httr jsonlite lubridate magrittr purrr rlang stringr tibble tidyr tidyselect]; }; canadamaps = derive2 { name="canadamaps"; version="0.1"; sha256="1i3yjhr5p06k6id3gws5dzdhf4jy143brbfhi2z4srq67xlz5agl"; depends=[dplyr magrittr rlang rmapshaper sf]; }; canadianmaps = derive2 { name="canadianmaps"; version="1.0.0"; sha256="1r45d65w8yfgwj8xf6lhsw0fi1b8j8gyayxrcs7wy56kacjjvym8"; depends=[dplyr ggplot2 ggrepel RColorBrewer rgdal sp]; }; - cancensus = derive2 { name="cancensus"; version="0.4.8"; sha256="0j4q00av0wssd0nwhgkdsyrcvicc4lial66ibfh5pyzih5i0dhpg"; depends=[digest dplyr httr jsonlite rlang]; }; + cancensus = derive2 { name="cancensus"; version="0.5.0"; sha256="0cnf16b2hn414w3saw84g7v06bhz2yi676ipzbp75dcsr0gk71pw"; depends=[digest dplyr httr jsonlite rlang]; }; cancerGI = derive2 { name="cancerGI"; version="1.0.0"; sha256="1chkcyf9m98gbn6b3vmb1baw7kii4g5vxvg2xfi7i6wwdn8sqr65"; depends=[igraph qvalue reshape2 survival systemfit]; }; cancerTiming = derive2 { name="cancerTiming"; version="3.1.8"; sha256="1sfi8q2f5ag7iak0sf9pmqncb89w3gnxdiwjwpivkwhr28ais4mq"; depends=[gplots LearnBayes]; }; candisc = derive2 { name="candisc"; version="0.8-6"; sha256="17bhh3jgaq5hrlwaapwpsgk7f8a3sg2cmrjd1hgfxxx0z30a6icn"; depends=[car heplots]; }; canprot = derive2 { name="canprot"; version="1.1.2"; sha256="1lwlgzy0gxp7jrak838awmqz3w0x7qd51bkyhydb1s61073w77x8"; depends=[CHNOSZ MASS rmarkdown xtable]; }; cansim = derive2 { name="cansim"; version="0.3.10"; sha256="0cg6fjw7mbzhlbc83s0wv313hhvm2jc9phs6m97nigi5yy05faa2"; depends=[DBI digest dplyr httr jsonlite purrr readr rlang RSQLite rvest stringr tibble xml2]; }; - canvasXpress = derive2 { name="canvasXpress"; version="1.37.0-1"; sha256="1knq67j40vbrcdqbr1z3g5b5i5x62i07jy89sqx3045y3p66wsma"; depends=[htmltools htmlwidgets httr jsonlite]; }; + canvasXpress = derive2 { name="canvasXpress"; version="1.37.4"; sha256="00k7599b1lifbaxv7iqgb48mwd6r25wdkwi6qrzg4jzl41acx4pg"; depends=[htmltools htmlwidgets httr jsonlite]; }; canvasXpress_data = derive2 { name="canvasXpress.data"; version="1.34.2"; sha256="10fdlb1yp5x9533jdammncfrrlxzpcz9as8i0209pwzjywvxby3s"; depends=[]; }; cap = derive2 { name="cap"; version="1.0"; sha256="1pv8hskxjbp589dn7rx80yaa1ld76x1w37bss2fyrys1p3qr78aa"; depends=[MASS multigroup]; }; cape = derive2 { name="cape"; version="3.1.0"; sha256="0r20c5z28jyc5djymwkfzczyi3rlnj20p00jhc4dsywjcp68fx6n"; depends=[abind caTools corpcor doParallel evd foreach here igraph Matrix pheatmap propagate qtl qtl2 qtl2convert R6 RColorBrewer regress shape stringr yaml]; }; @@ -6941,7 +6955,7 @@ in with self; { car = derive2 { name="car"; version="3.0-12"; sha256="00kk8l71508f73kyn21is1mx6kjbrzdq3ls94c5ajhiqmvpsd6dq"; depends=[abind carData lme4 maptools MASS mgcv nlme nnet pbkrtest quantreg]; }; carData = derive2 { name="carData"; version="3.0-5"; sha256="06j52rpbqi6fj7chfjwjbwbr6slrbb7i3aygv66gnfiyndcp3rq2"; depends=[]; }; carSurv = derive2 { name="carSurv"; version="1.0.0"; sha256="0wv7lp10i4sdfqyizg77ghblp3pcp7wzhs946sm0wl6w00krav9j"; depends=[corpcor fdrtool mboost Rcpp survival]; }; - caracas = derive2 { name="caracas"; version="1.1.1"; sha256="0s97if3sgsji9qah66ha328lvsjgpdyw6wvkgmfcy5r4974qfi71"; depends=[magrittr reticulate]; }; + caracas = derive2 { name="caracas"; version="1.1.2"; sha256="0my74q2l4vncans5s541mphl5pvkd4knxb0i396yf5w6a1vnqwlw"; depends=[magrittr reticulate]; }; carat = derive2 { name="carat"; version="2.0.2"; sha256="0f6r4x5skjq7vcmwfhnrzrf69ry360y7wqrr5gsys8l5nv6qbjii"; depends=[ggplot2 gridExtra Rcpp RcppArmadillo stringr]; }; carbonate = derive2 { name="carbonate"; version="0.1.3"; sha256="0y1wjrlh0rbfl1wz9028b637gs20giifp9ykg1yir2ak7fpwbq85"; depends=[clipr details httr magick R6 RSelenium rtweet wdman yaml]; }; carcass = derive2 { name="carcass"; version="1.6"; sha256="0nhp35nxjqqmy15rf9vc0qyymy7d0v8mc84570b9nc62g5xac8xy"; depends=[arm expm lme4 MASS survival]; }; @@ -6964,9 +6978,8 @@ in with self; { cartography = derive2 { name="cartography"; version="3.0.1"; sha256="1ginq160ag0sv5xfiqc5a5vizsqvl3maw61yskwhfnjb2lcgk2yg"; depends=[classInt curl png raster Rcpp rgeos sf slippymath sp]; }; cartools = derive2 { name="cartools"; version="0.1.0"; sha256="0gc5502373f0c2m2rh6awvyfqrg1wx1f341dm2byk9znba887lgs"; depends=[animation devtools dplyr gapminder ggplot2 knitr rlist rmarkdown roxygen2 sde shiny tidyverse usethis]; }; carx = derive2 { name="carx"; version="0.7.1"; sha256="1qyqsj6pfzzqyaj6076zvgcimhl4cll6sxfb6aigm02rwfkq5gvh"; depends=[matrixStats mvtnorm nlme tmvtnorm xts zoo]; }; - casabourse = derive2 { name="casabourse"; version="0.2.0"; sha256="0qpbcdb6lyzhjcn8yz1z7a7zb51brz72ja32j7f9spsq7xcplkf5"; depends=[gsheet httr rvest]; }; + casabourse = derive2 { name="casabourse"; version="1.2.0"; sha256="13i8fzcqlld50522x6nlqfpdg9pf1f32l3r98i7c9y38kpf6yg8p"; depends=[gsheet RJSONIO rvest]; }; cascadess = derive2 { name="cascadess"; version="0.1.0"; sha256="105m5w8rb8bkzmlc5nwb4g0wl8jgvz63jxq665x4jfq0z78qiwgd"; depends=[crayon htmltools magrittr rlang]; }; - caschrono = derive2 { name="caschrono"; version="2.2"; sha256="0lbf7j6p5gzm4kk8sgzcmxwwzg59wp6g6l38m04609lpcsvxkd52"; depends=[Hmisc zoo]; }; cascsim = derive2 { name="cascsim"; version="0.4"; sha256="0n6frnbby1pjpx1z9lzxflmja2mg0dy99c5f7biakpaqi82x5xjb"; depends=[copula fitdistrplus moments R2HTML scatterplot3d]; }; caseMatch = derive2 { name="caseMatch"; version="1.0.8"; sha256="0bp2g0zzcspa6riinsa3bp1qwiip6z058hn2y5mw0w9xah8a685a"; depends=[]; }; casebase = derive2 { name="casebase"; version="0.10.1"; sha256="0yrzl961apslhk77gdnl9mmh1sdxw1az8lpl393n30qs1kl6g4zv"; depends=[data_table ggplot2 mgcv survival VGAM]; }; @@ -6981,10 +6994,9 @@ in with self; { catR = derive2 { name="catR"; version="3.16"; sha256="1w39dxfzqk065v64qzmfamx8p1njsv13a461s6clagbqmhysmzbx"; depends=[]; }; catSplit = derive2 { name="catSplit"; version="0.1.0"; sha256="0nifbwczfs5g9xxlmqfwvcaxd940k5xmbdmamwlhvgif7myi6xr4"; depends=[caret data_table dplyr farff OpenML rpart stringr]; }; catSurv = derive2 { name="catSurv"; version="1.4.0"; sha256="02hrq51yk7zxz6vr4ykjwjnim9g09d63vpy3g0sm9hidbxryq139"; depends=[BH jsonlite ltm plyr Rcpp RcppArmadillo RcppGSL RcppParallel]; }; - cata = derive2 { name="cata"; version="0.0.10.3"; sha256="0gqscxzz7n04lh71481rzf6lmdg2xdsdpgp6viwxmmqm4zl5g1xj"; depends=[]; }; + cata = derive2 { name="cata"; version="0.0.10.8"; sha256="0mh74d1vr78ikpyrzv56sfc62ip4f8dhykzfgln9ri033nc5pvjp"; depends=[]; }; catalog = derive2 { name="catalog"; version="0.1.0"; sha256="15bxlwypk0xgf0qggq6jgxa951ipmn61w370f3lcywkvaxw1h4ca"; depends=[dplyr sparklyr]; }; catch = derive2 { name="catch"; version="1.0.1"; sha256="1a63d1a6pzzirdzswngjj036jmg41hbiadwriws7k05qp95jdh6a"; depends=[MASS Matrix tensr]; }; - catchr = derive2 { name="catchr"; version="0.2.31"; sha256="0mj3cgv2d217hcmyr8x0i83wysxhixgly5y1fs6jb1x09gs1cwnd"; depends=[purrr rlang]; }; catcont = derive2 { name="catcont"; version="0.5.0"; sha256="0ix6ipm3nn9aq5vxirjga2kwwfnxn4v8ggfjlg5v9027v2r8rb96"; depends=[dplyr]; }; catdap = derive2 { name="catdap"; version="1.3.5"; sha256="0fyhl69z2lznymvpzxra9qvcg85ggzkfjy68c6mzdmf1ja44d2k5"; depends=[]; }; catdata = derive2 { name="catdata"; version="1.2.2"; sha256="14kx7yi0cv6dyh9wjasb8gn6cp1bhglgwql7dc2a7lqvdcp0d5vj"; depends=[MASS]; }; @@ -6992,7 +7004,7 @@ in with self; { categoryEncodings = derive2 { name="categoryEncodings"; version="1.4.3"; sha256="0ns8ml2hm41650bi8yag6w3k9nb2ky43370444cgy3i7ajpzw87w"; depends=[data_table glmnet sparsepca]; }; catenary = derive2 { name="catenary"; version="1.1.2"; sha256="1n64kq3lkaf00a2mghs67hnxvi4dp6g12pwifyx0bd418wkw9wf3"; depends=[boot broom dplyr ggplot2 tidyverse]; }; catfun = derive2 { name="catfun"; version="0.1.4"; sha256="1482rll333fvy4h58f15flfs7qrck3vk9bzpdn3hayhnmc7svmma"; depends=[broom cli DescTools epitools Hmisc magrittr rlang]; }; - cati = derive2 { name="cati"; version="0.99.3"; sha256="0hq6hdzriab380pc0mx6g8xqflqj5mznr4b7fqw2f51kx8ang8hg"; depends=[ade4 ape e1071 FD geometry hypervolume nlme rasterVis vegan]; }; + cati = derive2 { name="cati"; version="0.99.4"; sha256="02g33kkp97kswiyjsd378zpa3fc9rjk2d9f4l1gdh7pzglabsmgl"; depends=[ade4 ape e1071 FD geometry hypervolume nlme rasterVis vegan]; }; catlearn = derive2 { name="catlearn"; version="0.8"; sha256="0vk4amvl6l4cxhfcr9z5glyb752vfsizlzqb14jv04am391xl4qd"; depends=[doParallel dplyr foreach Rcpp RcppArmadillo tidyr]; }; catmap = derive2 { name="catmap"; version="1.6.4"; sha256="18449qh10jxfi8p49gmbnib5y013nfdgdblbs4n0mfs0nnzb10sx"; depends=[forestplot metafor]; }; catmaply = derive2 { name="catmaply"; version="0.9.0"; sha256="0x2pzvjjhbwnvj8q1882bvqg895nj2airgmcidkixjmbq267vajz"; depends=[dplyr lubridate magrittr plotly rlang tidyverse]; }; @@ -7074,7 +7086,7 @@ in with self; { cenROC = derive2 { name="cenROC"; version="1.2.0"; sha256="07ja3yyqmb9cs76if32aksgcwki3y6nh13lvn9j0bdgbgqx65f3r"; depends=[condSURV icenReg Rcpp RcppEigen survival]; }; censCov = derive2 { name="censCov"; version="1.0-0"; sha256="0i9vmyi12f1m5xnrl4cxk3z9qv7ymzxsyf4gbnpg1ph63yfnhv3g"; depends=[survival]; }; censNID = derive2 { name="censNID"; version="0-0-1"; sha256="1ij5ci6nkqf0rq51vyh4jw5sr3y46yndfkjmwl78ppdj66axxir5"; depends=[]; }; - censReg = derive2 { name="censReg"; version="0.5-32"; sha256="044f3a1vkr318drcipv9zz5qsx85ld95x7fsy0w6cpc6zlkwxsyb"; depends=[glmmML maxLik miscTools plm sandwich]; }; + censReg = derive2 { name="censReg"; version="0.5-34"; sha256="025r19w40bc1vzz45sz1zywsfwp9p157mmlr4k78mvp6c096idwl"; depends=[glmmML maxLik miscTools plm sandwich]; }; censable = derive2 { name="censable"; version="0.0.3"; sha256="15274slkqkmwvipjb7p58knwpmq6iahpik2dg80j96fjdrpppl0g"; depends=[dplyr magrittr memoise rlang sf stringr tibble tidycensus]; }; censo2017 = derive2 { name="censo2017"; version="0.6.1"; sha256="02q25kxv6kxj3634xk7vd3mwa8qvnmagwyh020z9yq6l6qfn2s6b"; depends=[cli crayon DBI duckdb httr purrr rstudioapi tibble]; }; censorcopula = derive2 { name="censorcopula"; version="2.0"; sha256="16pk4xlpliif02qznrhvl8qmrr6k4kknygqxcm83nsjxy6dcyga8"; depends=[copula]; }; @@ -7098,7 +7110,7 @@ in with self; { ceterisParibus = derive2 { name="ceterisParibus"; version="0.4.2"; sha256="0hxklydsqb69y5sv2hanp5ja9k0063swf5si1j6gcj15lp7phpif"; depends=[DALEX ggplot2 gower knitr]; }; cfa = derive2 { name="cfa"; version="0.10-0"; sha256="12z58y4ls9m58wpj1xa4ir2p2apzxaskps05sxy2946m24i71zfk"; depends=[]; }; cfbfastR = derive2 { name="cfbfastR"; version="1.6.4"; sha256="0harc4b3qxdb2gy01p6si7na8lrqjidw6ysndj12snyhdrx2id1m"; depends=[cli dplyr furrr future glue httr janitor jsonlite magrittr mgcv nnet progressr purrr rlang stringi stringr tibble tidyr xgboost]; }; - cfda = derive2 { name="cfda"; version="0.9.11"; sha256="0zlsrbn5yc3cvj8b3kgkc6ah6lqdqx1315cz1qac4m9yx9cybvlg"; depends=[diagram fda ggplot2 mgcv msm pbapply]; }; + cfda = derive2 { name="cfda"; version="0.9.12"; sha256="0xhw3vkvgzg1gg7zvnzp1xpja82791sgmclb0pbl7lcx2fbqigcx"; depends=[diagram fda ggplot2 mgcv msm pbapply]; }; cfdecomp = derive2 { name="cfdecomp"; version="0.4.0"; sha256="0g61gpihk5kbbrqzn15fqjv3bawsq1vq3sdssbzs5j96afmf2aq8"; depends=[]; }; cffdrs = derive2 { name="cffdrs"; version="1.8.18"; sha256="15bl1sfm2yz897b5w0x0kvyf2z3rx32n436gsnsx5gd32v5v18w1"; depends=[data_table doParallel foreach geosphere raster rgdal]; }; cffr = derive2 { name="cffr"; version="0.2.1"; sha256="0xnql538s5q8vdky343knkld7b400z22mx7znib17an7jjd4wz6v"; depends=[crayon desc jsonlite jsonvalidate yaml]; }; @@ -7132,7 +7144,7 @@ in with self; { changepoints = derive2 { name="changepoints"; version="1.0.0"; sha256="0ilzanfinzkadflknr9b4l9s1y2yl6vs4h5z1zi6kp9qps2asd10"; depends=[data_tree gglasso glmnet ks MASS Rcpp RcppArmadillo]; }; changepointsHD = derive2 { name="changepointsHD"; version="0.3.3"; sha256="1wdhmkg21kb5jd95a0aqqp2qgdkndc69rbdxjf792gq8f1rigarh"; depends=[Rcpp RcppArmadillo]; }; changepointsVar = derive2 { name="changepointsVar"; version="0.1.0"; sha256="0kj9m9jik1dm5fx4c4hb559f5irpl1mvxk4wwajd5577a2fdqxb5"; depends=[lars MASS]; }; - changer = derive2 { name="changer"; version="0.0.3"; sha256="1pmnspadkshz7z9f275vks1xjh6a9k37h7j51dqdjrqilzq7y6sf"; depends=[available devtools git2r]; }; + changer = derive2 { name="changer"; version="0.0.4-1"; sha256="0d5rh5a7ja5n390ikys939j8wc8kyvrv7pddpnzj8vmq7a90zzkd"; depends=[available devtools git2r]; }; chantrics = derive2 { name="chantrics"; version="1.0.0"; sha256="0123mbdr4bkkp8w9w15bg9qxkbpd6nyp602fw690zsy1dyimm78k"; depends=[AER chandwich lmtest progress purrr rlang sandwich]; }; charlatan = derive2 { name="charlatan"; version="0.4.0"; sha256="0hrc4kdympi05j6gx0x6vy4jb1mvxxi7pcrnpzcp8vxvd6r3wjmq"; depends=[R6 tibble whisker]; }; chartql = derive2 { name="chartql"; version="0.1.0"; sha256="108csn7q8qrjhiss54f5bliv3av7psq7kfryspajbdb6wm9ciz3p"; depends=[ggplot2 stringr]; }; @@ -7155,7 +7167,7 @@ in with self; { cherryblossom = derive2 { name="cherryblossom"; version="0.1.0"; sha256="1fn0xi65y0w1gmyrjlh8lb2is34r2dc5bym0ynrgjv8h595nzhwp"; depends=[]; }; chess = derive2 { name="chess"; version="1.0.1"; sha256="0b0lz8r48bvksjnh385p1ni22hw1yvs6255pjbpj49ga9dwziin0"; depends=[cli magrittr purrr reticulate rsvg]; }; chessR = derive2 { name="chessR"; version="1.5.0"; sha256="0ikpr4xaysnjzclj1x9lq8fm7rak2z5y3wn9494dk6lgwmk3hrr6"; depends=[curl dplyr jsonlite lubridate magrittr purrr rlang rvest stringr tidyr xml2]; }; - chest = derive2 { name="chest"; version="0.3.5"; sha256="0jmihq8p6gxyxgmpdgwmnhl98s38pqzdzdqzqiy54zyqgd69plh8"; depends=[broom dplyr forestplot generics ggplot2 MASS speedglm survival tibble]; }; + chest = derive2 { name="chest"; version="0.3.6"; sha256="12n65l4r85cr16c3p2w1krnqnxkvalrpi8xnbzw4y2m0sp42ydgl"; depends=[broom dplyr forestplot ggplot2 MASS speedglm survival tibble]; }; chi = derive2 { name="chi"; version="0.1"; sha256="1y91mwahj4j2wz0y5k5vdpq7ygq834h8jkn37n74lqnwvv1968rr"; depends=[]; }; chi2x3way = derive2 { name="chi2x3way"; version="1.1"; sha256="13qc8sigiw4gcxk8y50q7yfgzbssjyl41fizzjqzcp3p14kpsmzw"; depends=[]; }; chicane = derive2 { name="chicane"; version="0.1.8"; sha256="0963r5jzyjihidh18ny9nqkim00bys3psdgrxhbah43bbl0kx43r"; depends=[bedr data_table doParallel foreach gamlss gamlss_tr iterators knitr MASS rmarkdown]; }; @@ -7163,13 +7175,14 @@ in with self; { childdevdata = derive2 { name="childdevdata"; version="1.1.0"; sha256="016x6xhqq1mfqlj9m5qv63k639xnqnrf5h6rdcyaa8sxn7nv34zm"; depends=[]; }; childesr = derive2 { name="childesr"; version="0.2.3"; sha256="1a58s0zph4mfmh9sdfbv7yaa20lx5gi0mca0ikzarfwxjl5knp39"; depends=[DBI dbplyr dplyr jsonlite magrittr purrr RMySQL]; }; childhoodmortality = derive2 { name="childhoodmortality"; version="0.3.0"; sha256="1ixd10jyzgr1ssnjas35kngpsqyjzl73wwpvcspv06cn12sv2b8d"; depends=[dplyr matrixStats plyr]; }; - childsds = derive2 { name="childsds"; version="0.7.6"; sha256="1h3p80byfma8zhivlq9jmdszm793chggnhb93qjnbl3vmnmnxgg7"; depends=[boot class dplyr gamlss gamlss_dist magrittr purrr purrrlyr reshape2 tibble tidyr VGAM]; }; + childsds = derive2 { name="childsds"; version="0.8.0"; sha256="1vv02kbw17b8zva2yc1qgi750z9yhyfv5xbig29dhyzvj8k00yvb"; depends=[boot class dplyr gamlss gamlss_dist magrittr purrr purrrlyr reshape2 tibble tidyr VGAM]; }; chilemapas = derive2 { name="chilemapas"; version="0.2"; sha256="0s2f5bhr7d64rlk4x7cv6zjrbnf5g86lgg026svgrdxvs1vqa4as"; depends=[dplyr magrittr rlang rmapshaper sf stringr]; }; chillR = derive2 { name="chillR"; version="0.72.7"; sha256="0wjxvrinl2zshgq15pm2l4ibl3y7aihg767sn8awvcdywl0dfkxx"; depends=[assertthat dplyr fields GenSA ggplot2 httr jsonlite Kendall metR patchwork pls plyr R_utils raster Rcpp RCurl readxl reshape2 rlang RMAWGEN scales sp stringr tidyr XML]; }; chinese_misc = derive2 { name="chinese.misc"; version="0.2.3"; sha256="0hlna52g00nh3908wgpb9ldgghff3gfjx24vmk5gikkazdqk9zrh"; depends=[jiebaR Matrix NLP purrr slam stringi tm]; }; chipPCR = derive2 { name="chipPCR"; version="1.0-2"; sha256="0q30ncnvbipvqbpxrx2yb68i2ybdfl1fbzj3f12dd2wmjjl72q1x"; depends=[lmtest MASS outliers ptw quantreg Rfit robustbase shiny signal]; }; chirps = derive2 { name="chirps"; version="0.1.4"; sha256="1yj91rvcsfsr2nmvk7qnxwfkbiblm4bdazs2p83g8ax4fwkrp39c"; depends=[httr jsonlite sf terra]; }; chisq_posthoc_test = derive2 { name="chisq.posthoc.test"; version="0.1.2"; sha256="0lvj3jqhaj1ijjpzvpq3fn3a1y3fgv69pxh91j6k958pn6vmp40i"; depends=[]; }; + chisquare = derive2 { name="chisquare"; version="0.1"; sha256="000y0wk2gh6yd4bh2n50v6zjr19ims6g7v7a1jc89iccqcgnff43"; depends=[formattable]; }; chk = derive2 { name="chk"; version="0.8.0"; sha256="10gcv00mgi88vgxr9jrs0ar67crmdcdi4m9g86cm6pg3ly0v097y"; depends=[lifecycle rlang]; }; chlorpromazineR = derive2 { name="chlorpromazineR"; version="0.2.0"; sha256="0w7v6xk3vyf9dyf9bh5v9516v78yhcdvy7h1140pg2yw8xmfyr0r"; depends=[]; }; chngpt = derive2 { name="chngpt"; version="2021.5-12"; sha256="00g724b0w7dd95s2k9x10yi9xz2qfkxrpa98npbfq2w1pb8mgc57"; depends=[boot kyotil lme4 MASS RhpcBLASctl survival]; }; @@ -7184,24 +7197,23 @@ in with self; { chorrrds = derive2 { name="chorrrds"; version="0.1.9.5"; sha256="045m3hqfk63zlb44s07wflaawzn030fg0nqck4w852m52a0r1z5v"; depends=[dplyr forcats magrittr purrr rlang rvest stringr xml2]; }; christmas = derive2 { name="christmas"; version="1.1.1"; sha256="0lxz71vbfqngkn4mg0c74ainww3vbzn8f4s5kmnw5bsd2mmwism7"; depends=[animation]; }; chromer = derive2 { name="chromer"; version="0.1"; sha256="0fzl2ahvzyylrh4247w9yjmwib42q96iyhdlldchj97sld66c817"; depends=[data_table dplyr httr]; }; - chromoMap = derive2 { name="chromoMap"; version="0.3.1"; sha256="06iy8rip99bsw5vadf6f7gpxarj4hs2japjq39zgzws8rrzvqccm"; depends=[htmltools htmlwidgets]; }; + chromoMap = derive2 { name="chromoMap"; version="0.4.1"; sha256="0iiiwxzbq2d3vrzijgw1ahrw1zkk55bvp2g31jjfzzff3xs05h23"; depends=[htmltools htmlwidgets]; }; chromseq = derive2 { name="chromseq"; version="0.1.3"; sha256="0m9dnm50iw176ffn6syd3538hxmjhkrxfzaf13210q100wk0lgz2"; depends=[]; }; chron = derive2 { name="chron"; version="2.3-56"; sha256="0p9zz96jfyf139924hdwkzhr8knkjvx6547ac53rknm3a6wwngl6"; depends=[]; }; chronicle = derive2 { name="chronicle"; version="0.3"; sha256="0yfrxr93fbxgpxjs1gb56pdx1kk4nn9xvy2csgl1rhzrgbl343m3"; depends=[data_table dplyr DT dygraphs ggplot2 glue knitr magrittr plotly prettydoc purrr readr rlang rmarkdown rmdformats scales skimr viridis zoo]; }; chronochrt = derive2 { name="chronochrt"; version="0.1.0"; sha256="0n4921bxh7v5gbq65dsppcj9hs54ay6s219cmzqwhlgb2pv0mhmp"; depends=[dplyr ggplot2 magick magrittr readr rlang tibble tidyr tidyselect]; }; chronosphere = derive2 { name="chronosphere"; version="0.4.1"; sha256="1x4w4kap7cwkmrq4v6bvhlzm299i8chh4k02873ipnnqrhjxdhka"; depends=[raster sp]; }; chunkR = derive2 { name="chunkR"; version="1.1.1"; sha256="1kw3hsx5k4cdicx0hc1v0mf2nzvqg95shx2xv05vb2pass48qw48"; depends=[Rcpp]; }; - chunked = derive2 { name="chunked"; version="0.5.1"; sha256="08gw05bng4p35kfd9zcxz1l73jhlxlymw55vrsl6f2771l1r4bz5"; depends=[DBI dplyr LaF progress rlang]; }; + chunked = derive2 { name="chunked"; version="0.6.0"; sha256="1j16am4nzwy2ckisksl5mk8h05ala6lpdd5qrb1gwyrhli4lx45a"; depends=[DBI dplyr LaF progress rlang]; }; chunkhooks = derive2 { name="chunkhooks"; version="0.0.1"; sha256="1kps7widb9ql01njy8xl03lplrybl2ci5fvx5vzzwnwps6s4y3fm"; depends=[knitr measurements prettyunits]; }; chyper = derive2 { name="chyper"; version="0.3.1"; sha256="0ps66gqngi38lz8sq4zsvdbmj0qn4pz8aax9dgmngmwb8hdd503r"; depends=[]; }; ciTools = derive2 { name="ciTools"; version="0.6.1"; sha256="0d6aq4wcxi1q59g4kfx49x1li41rfwx2z2v4xzz2xkldn6h1794z"; depends=[arm boot dplyr lme4 MASS survival]; }; ciccr = derive2 { name="ciccr"; version="0.2.0"; sha256="0xmjqwlw2xq332pyagrn8ay6ipyvmxw1q7zf4cza4ly2mz9mf1ws"; depends=[]; }; cicerone = derive2 { name="cicerone"; version="1.0.4"; sha256="1z3i720970kmczg01wxwbyqwd9zby69lchw3pgqwpn2bjr66jimh"; depends=[assertthat R6 shiny]; }; - cif = derive2 { name="cif"; version="0.0.9"; sha256="1rs44di1qjf6j89xg2x0a3s3lsnqxwnz0wcnys8xp68q198gipb6"; depends=[lubridate]; }; + cif = derive2 { name="cif"; version="0.1.1"; sha256="0z0dpq5vyv8s4cn4y8ph8y4b8nb63bkqsjmlixa1kr29l132gj1l"; depends=[lubridate]; }; cifti = derive2 { name="cifti"; version="0.4.5"; sha256="092334lcpkzv52bg53hzx64dnrwq67f3p9fzwchmafx1l46xrqx9"; depends=[gifti oro_nifti R_utils xml2]; }; ciftiTools = derive2 { name="ciftiTools"; version="0.8.0"; sha256="0riladbcjgx4xgjxd1hbiaaghpgr5qn7lvgrpky4xhng8qycckp7"; depends=[fields gifti oro_nifti RColorBrewer rgl RNifti viridisLite xml2]; }; cimir = derive2 { name="cimir"; version="0.4-1"; sha256="0r8fmvqcihxsj0w1g2xm02wwqcgrwadbl5n1dzksw8zpcjfw7fkn"; depends=[curl dplyr glue jsonlite purrr rlang stringr tidyr]; }; - cin = derive2 { name="cin"; version="0.1"; sha256="1pwvy5nh5nrnysfqrzllb9fcrpddqg02c7iw3w9fij2h8s2v6kq5"; depends=[]; }; cinaR = derive2 { name="cinaR"; version="0.2.1"; sha256="0i0fkh5j494fy9zy0p67ashqsa7vw3jhf092sw3nfyvmb7k4spnj"; depends=[ChIPseeker DESeq2 dplyr edgeR fgsea GenomicRanges ggplot2 ggrepel limma pheatmap preprocessCore RColorBrewer sva TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene writexl]; }; cinaRgenesets = derive2 { name="cinaRgenesets"; version="0.1.1"; sha256="0pz3iw559d8rsxmnwd1cqcpv8qnnh9bfvc9ydzwznx8jczbldls8"; depends=[]; }; cinterpolate = derive2 { name="cinterpolate"; version="1.0.0"; sha256="1aw6hs41xin2hhgmi4pr5510v4sn6x735lachpc5gpbxch5h3f82"; depends=[]; }; @@ -7209,8 +7221,8 @@ in with self; { circacompare = derive2 { name="circacompare"; version="0.1.1"; sha256="15vpnh20wni2wmp86xql9737kbxbi28s9a4pi3rihr1w5mcgqfaj"; depends=[ggplot2]; }; circle = derive2 { name="circle"; version="0.7.1"; sha256="04gb3575sdlhh5z6bkam8sj2wg9npgq0b9572qm2dlrspmjqvcd4"; depends=[cli httr jsonlite]; }; circletyper = derive2 { name="circletyper"; version="1.0.1"; sha256="11jqcz0faxd7g50nmxa58c3gyaysvzcrgh6yalpxapz06md17wq5"; depends=[shiny]; }; - circlize = derive2 { name="circlize"; version="0.4.13"; sha256="16rnqlkgzhnm69y70k9fiz8vvwlm5dyng04hlxqvvaxix3wdpfkc"; depends=[colorspace GlobalOptions shape]; }; - circular = derive2 { name="circular"; version="0.4-93"; sha256="0hki85rs8wc5950pjaw28q54rly2napfbcrx3pchlfap6wwy5kkn"; depends=[boot mvtnorm]; }; + circlize = derive2 { name="circlize"; version="0.4.14"; sha256="0b0yqjmbj1s1jg7y6cgyawadlfv0i6xrls8a4qy9qs7hz8zrpvb1"; depends=[colorspace GlobalOptions shape]; }; + circular = derive2 { name="circular"; version="0.4-94"; sha256="0wanbd6n7g1avvyc7pm0lnkwg868dix2byiz4wm6vmxzm0y47fmr"; depends=[boot mvtnorm]; }; circularEV = derive2 { name="circularEV"; version="0.1.0"; sha256="03qr0sfiqpz0zvm9xihwi07snhxkj5h6bcsxhrsr89xyb70wqwg0"; depends=[circular doParallel foreach ggplot2 mgcv NPCirc]; }; circumplex = derive2 { name="circumplex"; version="0.3.8"; sha256="1c6h06ccsql3yy3304b537wl40wd8f0sgj3gwi376irfz5zq227j"; depends=[assertthat boot dplyr ggforce ggplot2 htmlTable magrittr purrr Rcpp RcppArmadillo rlang tibble tidyr]; }; cit = derive2 { name="cit"; version="2.3.1"; sha256="1i1179d0rjnmrlwh031dxmvwp2w6k1c9fj5g3cfmzjk4xxb2bjha"; depends=[]; }; @@ -7224,7 +7236,8 @@ in with self; { ciuupi = derive2 { name="ciuupi"; version="1.1.0"; sha256="0czfmmf62p1vml24s87pdwv52spqycchpkqzwk8vyd4n1z27r5s2"; depends=[functional nloptr pracma statmod]; }; ciuupi2 = derive2 { name="ciuupi2"; version="1.0.1"; sha256="04x02qmqqyrc4h4z4mpl4zn5vr9y28k6j6n30fbr9q238zd543db"; depends=[functional nloptr pracma PreciseSums statmod]; }; civis = derive2 { name="civis"; version="3.0.0"; sha256="12q96bj21832zqqbisfxmnpqw7w72v350lyf7cpjgr7cq7b51brd"; depends=[future httr jsonlite memoise]; }; - cjbart = derive2 { name="cjbart"; version="0.2.0"; sha256="04zcy1051q9kgvjf9y3a952qz07r2syw80asndg9hbwx0jbvvpqm"; depends=[BART ggplot2 randomForestSRC Rdpack rlang tidyr]; }; + cjar = derive2 { name="cjar"; version="0.1.0"; sha256="1lachh62jsv4risbn4krd59hd8ni22figkfznh03w1mzygbvrkbg"; depends=[assertthat dplyr glue httr jose jsonlite lubridate magrittr memoise openssl progress purrr R6 rlang stringr tibble vctrs]; }; + cjbart = derive2 { name="cjbart"; version="0.2.2"; sha256="11ml35q1vjc696n6pwpbhzhf6g9r62l1yahbwkqbyd1jnkhpxmw4"; depends=[BART ggplot2 randomForestSRC Rdpack rlang tidyr]; }; cjoint = derive2 { name="cjoint"; version="2.1.0"; sha256="1bs380ji9vsc1d77wqhl0ij9xblww3g9x3hiwpcpz26wihqcx7ac"; depends=[DT ggplot2 lmtest Matrix sandwich shiny shinyBS shinyjs survey]; }; ckanr = derive2 { name="ckanr"; version="0.6.0"; sha256="1fhyyyklfsi1zva9vg397x8p0zbnchajkjb1kcfm4f861xq60j16"; depends=[crul DBI dbplyr dplyr jsonlite magrittr]; }; clValid = derive2 { name="clValid"; version="0.7"; sha256="18aiyjhnh5mfdxbzns4cy0r8bymfikhwkybpn4g04qhli5ls8z83"; depends=[class cluster]; }; @@ -7239,9 +7252,11 @@ in with self; { classifierplots = derive2 { name="classifierplots"; version="1.4.0"; sha256="0agxm3vrbs8lqhk1xvfc3wzf0q0hxhgyp23j5qi5mi1drgnw1jj1"; depends=[caret data_table ggplot2 gridExtra png Rcpp ROCR]; }; classifly = derive2 { name="classifly"; version="0.4"; sha256="0mw1vcas0gr1r4yvh0j02zhk7kp5342r0bhhg776hqgqdczgh5zj"; depends=[class plyr]; }; classmap = derive2 { name="classmap"; version="1.2.0"; sha256="0f5b1hx1n72042kkzkl4n9vr2w7q1pc1ivl0n907k4a7jzi3q63k"; depends=[cellWise cluster e1071 ggplot2 gridExtra kernlab randomForest robustbase rpart]; }; + classyfireR = derive2 { name="classyfireR"; version="0.3.8"; sha256="1k1j4p5xmracrlaxfmvpp1r6krirvpfrv0f0jq8377kmhxmdwmm5"; depends=[cli clisymbols crayon dplyr httr jsonlite magrittr purrr rjson RSQLite stringr tibble tidyjson tidyr]; }; cld2 = derive2 { name="cld2"; version="1.2.1"; sha256="01p64r2ij1i0xm3835vfnpxmmbnnaigp0md9x1hrq8gfsdwnzv3x"; depends=[Rcpp]; }; cld3 = derive2 { name="cld3"; version="1.4.2"; sha256="1f276kpg5ir1dmaacii55zb05d9r11995zv70lzrs4jn3q2h3qn6"; depends=[Rcpp]; }; clda = derive2 { name="clda"; version="0.1"; sha256="03zfanvpz1h42h2z38a63fck1p5hqig4w2svknzpw7mryji5q9b1"; depends=[MASS]; }; + cleaR = derive2 { name="cleaR"; version="0.0.1"; sha256="080jgkrzhk1h16ijf4q0x7ks9f96sx92dgxvqz22956gm0q8yxjy"; depends=[]; }; clean = derive2 { name="clean"; version="2.0.0"; sha256="0zvk3a5yz54g2mn7y1d91z6ljglbyq1hkh4iip1dfyi15chrqv7y"; depends=[cleaner]; }; cleanNLP = derive2 { name="cleanNLP"; version="3.0.3"; sha256="0bc0ya36yhknqhqc76yf9clgiacyb6zypzirzg6i0213bqw2ihdp"; depends=[Matrix reticulate stringi udpipe]; }; cleanTS = derive2 { name="cleanTS"; version="0.1.0"; sha256="0axrc6ax2d37mlx2cix9jbk9j2ksa86g074w70lymvl40f0zaz41"; depends=[anomalize data_table gganimate ggplot2 ggtext glue imputeTestbench imputeTS lubridate shiny stringr tibble tibbletime transformr]; }; @@ -7255,7 +7270,7 @@ in with self; { clespr = derive2 { name="clespr"; version="1.1.2"; sha256="1993kd70w48a110im47vcpll0c6nfrm7m33r6l8rzgwnpsmcls8g"; depends=[AER clordr doParallel foreach magic MASS pbivnorm survival]; }; clevr = derive2 { name="clevr"; version="0.1.1"; sha256="077qhqfzcy1ciar70df7q98ms003b9mnqgji1nxkx5ncw9hdkzd4"; depends=[BH Matrix Rcpp]; }; clhs = derive2 { name="clhs"; version="0.9.0"; sha256="04hd0p51j15294fv1a9qx61p5yfmh8hcx784v3x1s0kx7km34saz"; depends=[cluster ggplot2 plyr raster Rcpp RcppArmadillo reshape2 sf sp]; }; - cli = derive2 { name="cli"; version="3.1.1"; sha256="1kslrx22djrs3wnf5xyligwy7h4hzsn5awl946x961fn980ydcy8"; depends=[glue]; }; + cli = derive2 { name="cli"; version="3.2.0"; sha256="0qp8k1afrn6ppwi6d9n05fjgj02196qcsppji3q37ph99msinnnd"; depends=[glue]; }; cliapp = derive2 { name="cliapp"; version="0.1.1"; sha256="0v62lbcsja0xmlpqcps370n5c7bk4j2n8pwh9xyif5s4wpf82qz1"; depends=[cli crayon fansi glue prettycode progress R6 selectr withr xml2]; }; clickR = derive2 { name="clickR"; version="0.8.0"; sha256="0j8hl5cgdm4j4h3x3h7fp6w3xr8p350icvmf123z56f6fkj6c22z"; depends=[beeswarm stringdist]; }; clickstream = derive2 { name="clickstream"; version="1.3.1"; sha256="0z1yy5lr9m5x9ybimjy3f6kn490abdi038xi0qw7ny80f1ca6ry7"; depends=[arules ClickClust data_table ggplot2 igraph linprog MASS plyr reshape2 Rsolnp]; }; @@ -7263,27 +7278,27 @@ in with self; { clifford = derive2 { name="clifford"; version="1.0-5"; sha256="1n7wra4z73nxv2hkdl65iwfl9cr3wn7sa6wpvfg1c7yp72kskbp0"; depends=[BH disordR magrittr mathjaxr partitions Rcpp]; }; clifro = derive2 { name="clifro"; version="3.2-5"; sha256="1p2xy5r9axkj8yk6ywaq0w5i00bdfm15drjz227nx8p4vd3q6si8"; depends=[ggplot2 httr lubridate magrittr RColorBrewer reshape2 rvest scales stringr xml2]; }; clikcorr = derive2 { name="clikcorr"; version="1.0"; sha256="0zdnbcl5q293mmm6pbn4ri7p1q6z6sff74axsb3nyd153v2xamr5"; depends=[mvtnorm]; }; - climaemet = derive2 { name="climaemet"; version="1.0.0"; sha256="19i89274m7ybnlzgm5bgw6nwiwicc3fd2clmgiqklr23sq8zvn6w"; depends=[dplyr ggplot2 httr jsonlite lubridate rappdirs readr rlang tibble tidyr]; }; - climate = derive2 { name="climate"; version="1.0.3"; sha256="0wdns4zndnc4k2f6k22imr85glld9lsg3l43cprn0r8vcnzlhn08"; depends=[curl data_table httr XML]; }; + climaemet = derive2 { name="climaemet"; version="1.0.1"; sha256="1kvv0xbdcgkyg0pj7hs1552dqvl94z5gvik9p77lzq65kb17zsmg"; depends=[dplyr ggplot2 httr jsonlite rappdirs readr rlang tibble tidyr]; }; + climate = derive2 { name="climate"; version="1.0.4"; sha256="03yccy41rsxa7vy1qjpdkhfnbaaz4nndrn7zbn2lk746pdckhkmz"; depends=[curl data_table httr XML]; }; climateStability = derive2 { name="climateStability"; version="0.1.3"; sha256="1zag722sznr22xid2v1k4a9sh3sr3grfa3wwd2m943zpvyi1sk9a"; depends=[raster]; }; climatol = derive2 { name="climatol"; version="3.1.2"; sha256="0p3nk4n7izj0cmmqd9apa1gix5lfdzp08ydy0n7rkl5kbkmrkb6n"; depends=[mapdata maps]; }; - climatrends = derive2 { name="climatrends"; version="0.1.13"; sha256="1zpdh2fpgw3smksnagckhkayy6ccj8gixsdg51isk18gc8gqh7aw"; depends=[]; }; + climatrends = derive2 { name="climatrends"; version="0.2"; sha256="1jhj8h4as0qkbf4692z4rcvpg86cfs2fjks386gn0q1ayqn0cq91"; depends=[]; }; climdex_pcic = derive2 { name="climdex.pcic"; version="1.1-11"; sha256="01ax0kas43g3h21ixzc80f9gl4m9846gmk8v48rr0gkhcmbcc6jx"; depends=[PCICt Rcpp]; }; clime = derive2 { name="clime"; version="0.4.1"; sha256="0qs9i7cprxddg1cmxhnmcfhl7v7g1r519ff2zfipxbs59m5xk9sf"; depends=[lpSolve]; }; climextRemes = derive2 { name="climextRemes"; version="0.2.2"; sha256="04ra2xqkf9zg7hbmb5ycfql9nwkabxy8412d05ajshld4cr0gi45"; depends=[boot extRemes]; }; climwin = derive2 { name="climwin"; version="1.2.3"; sha256="1r2x5941k8l9z3517389y120sfhrskdpchc0pkibznza8aa95r85"; depends=[evd ggplot2 gridExtra lme4 lubridate Matrix MuMIn nlme numDeriv RcppRoll reshape]; }; clinDR = derive2 { name="clinDR"; version="2.3.5"; sha256="0p5pq0kpm8sfxv1a1dp2wyykp1qqbxbjz0c4f20igc25aazd7kaz"; depends=[doParallel DoseFinding dplyr foreach ggplot2 glue magrittr purrr rstan shiny tibble tidyr waiter]; }; - clinDataReview = derive2 { name="clinDataReview"; version="1.2.1"; sha256="1p4kq18nkf5iqni17ry7zzxax85iri1v8nwn4vgwsv8qw8k29r8r"; depends=[bookdown clinUtils crosstalk data_table ggplot2 haven htmltools htmlwidgets jsonlite jsonvalidate knitr plotly plyr rmarkdown stringr yaml]; }; + clinDataReview = derive2 { name="clinDataReview"; version="1.2.2"; sha256="0j9w2fvbar30c03zcbhmy8qgdcv5hwj0q873hslxs9l4sca108zd"; depends=[bookdown clinUtils crosstalk data_table ggplot2 haven htmltools htmlwidgets jsonlite jsonvalidate knitr plotly plyr rmarkdown stringr yaml]; }; clinPK = derive2 { name="clinPK"; version="0.9.0"; sha256="1n1m8szd8mxdshwz8l3hfdxi7zrmsah46kxkv7jiffwnfhijfhsm"; depends=[curl testit]; }; clinUtiDNA = derive2 { name="clinUtiDNA"; version="1.0"; sha256="0x3hb09073gkh60fc8ia0sfk948sm6z6j8sqkz275k4m8ryrabas"; depends=[]; }; - clinUtils = derive2 { name="clinUtils"; version="0.1.0"; sha256="1sd71jxb0h69kpqj0606v4km2m28acqc8a5d4nhvr97l7isdm9lv"; depends=[crosstalk data_table DT haven htmlwidgets knitr plyr viridisLite]; }; - clinfun = derive2 { name="clinfun"; version="1.0.15"; sha256="0cv1kdxj911scri82ms21lk9frsdp4251fawdsbqinby7k6hhmkc"; depends=[mvtnorm]; }; + clinUtils = derive2 { name="clinUtils"; version="0.1.1"; sha256="0j06plczw3k54yc07dv6x931nmg2cfvkcmza16pji1zlx7nzs3sc"; depends=[crosstalk data_table DT haven htmlwidgets knitr plyr viridisLite]; }; + clinfun = derive2 { name="clinfun"; version="1.1.0"; sha256="1fca5nd36xzb50ccbwrb4xxvzhqg7s60smwr42k5z9sfywfh79y8"; depends=[mvtnorm]; }; clinmon = derive2 { name="clinmon"; version="0.6.0"; sha256="0cd5mrirfll0zbm9k8glwdqnh4qy4dlfnsypr3xhyf6ppgm35hlv"; depends=[signal]; }; clinsig = derive2 { name="clinsig"; version="1.2"; sha256="1wgfl9kks57yizrf8z6x7dhmbl3a80q8nnj3a5n2hpc9yr8l9ijf"; depends=[]; }; clinspacy = derive2 { name="clinspacy"; version="1.0.2"; sha256="134nvkircy1a1rmsg2nszk2r8bcdmikmrx6plchdz8gxyjd6jmya"; depends=[assertthat data_table magrittr rappdirs reticulate]; }; - clintools = derive2 { name="clintools"; version="0.9.2"; sha256="1jz5mp5yvd4sc7i8z5y7chxz7gnvpcl5961g8jk01580knpnsz7b"; depends=[lme4 signal xml2]; }; + clintools = derive2 { name="clintools"; version="0.9.3"; sha256="0cf0gc3nhhjp5mf90qnbxfl6dsxjfbvddfw88xhi6j5nnfaxd44x"; depends=[lme4 signal xml2]; }; clipp = derive2 { name="clipp"; version="1.1.0"; sha256="1mh3rhkjm13yp1890d7zy2qn50nv177z74kr4pgnp5i7vlr8zqr6"; depends=[]; }; - clipr = derive2 { name="clipr"; version="0.7.1"; sha256="1ywa4kipwc2d7na6iiz3wzdah99h6aynnh74yxl3nzl40xxlgbgz"; depends=[]; }; + clipr = derive2 { name="clipr"; version="0.8.0"; sha256="1s9vvv3cxnz8w11gsi8z9ddv9jzib5qf5qqxnwqrrv7vj8cr7hij"; depends=[]; }; clisymbols = derive2 { name="clisymbols"; version="1.2.0"; sha256="1q7gi2zmykhzas9v8fdnbpdq7pzdcpbhim1yxvd2062l777g4j86"; depends=[]; }; clock = derive2 { name="clock"; version="0.6.0"; sha256="0vx77zgb19khwikvbl4cw6v0zkgxdz79l9j1knfl5l2cn4nj7sl5"; depends=[cpp11 ellipsis rlang tzdb vctrs]; }; clockify = derive2 { name="clockify"; version="0.0.9"; sha256="1m8jpafraycb85g7z4nna3isjyd5vfacbrxwpgn9745rbkg5iwly"; depends=[anytime dplyr httr janitor logger lubridate purrr tibble tidyr]; }; @@ -7293,7 +7308,7 @@ in with self; { clordr = derive2 { name="clordr"; version="1.6.0"; sha256="1w9km87wndr4fssfn7c9g2sy5lnk1ik0sqqwqyas7qc2h48la4di"; depends=[doParallel foreach MASS pbivnorm rootSolve tmvmixnorm ttutils]; }; cloudUtil = derive2 { name="cloudUtil"; version="0.1.12"; sha256="18g946j00anlk20d0fh01w0xyj1kwyy7jhlgz5a85wmp6s2gkz74"; depends=[]; }; cloudml = derive2 { name="cloudml"; version="0.6.1"; sha256="1j15q9yb2rc4fbjxfh21fiq6is8dnb8nfyi7g8iazgfwb3p9ahpx"; depends=[config jsonlite packrat processx rprojroot rstudioapi tfruns withr yaml]; }; - cloudos = derive2 { name="cloudos"; version="0.2.0"; sha256="0n0ldg81k6i0wqnzzimkr7pyi2q705g9hia4ckf1cp2sskgrfvj0"; depends=[dplyr ggplot2 httr jsonlite rappdirs tibble]; }; + cloudos = derive2 { name="cloudos"; version="0.3.0"; sha256="1rb82p77ipwvc57h46ph9gy0p6a4sq6mcz1cmq29jhs5by87kr21"; depends=[dplyr ggplot2 httr jsonlite rappdirs tibble tidyr]; }; cloudstoR = derive2 { name="cloudstoR"; version="0.2.0"; sha256="0x9pl9x5sjs5vwcz5i1r5ymyv3rlv9adjc5y9kvxljdxgvnv6i08"; depends=[cli curl getPass httr keyring rio XML]; }; clr = derive2 { name="clr"; version="0.1.2"; sha256="088ks9lrhlyvg3yvlfmb0091yp6qp5bzg9h5r6ryv3bk6y56sajx"; depends=[dplyr lubridate magrittr]; }; clttools = derive2 { name="clttools"; version="1.3"; sha256="0va9k1b4xsb2sgpxzvid6sa8m6b8i3r4kgghclmb78nnrs480cwi"; depends=[]; }; @@ -7303,6 +7318,7 @@ in with self; { cluscov = derive2 { name="cluscov"; version="1.1.0"; sha256="0345v5r6b53243h5bir29v0w77pmwjqjkqfrjnk5j5r1wbh98q1w"; depends=[MASS quantreg]; }; clusrank = derive2 { name="clusrank"; version="1.0-2"; sha256="1kpcdq0mnanfnbsbpbcv96ijgf2gv3n6i69jihmw8id7mjqjh2a9"; depends=[MASS Rcpp]; }; clust_bin_pair = derive2 { name="clust.bin.pair"; version="0.1.2"; sha256="11lqd3vmx4kg08n6iv9na8rra49dkldx4f8jyf43hppbjrbvfinm"; depends=[]; }; + clustAnalytics = derive2 { name="clustAnalytics"; version="0.3.1"; sha256="1himrajf9fw7j06bq0y0l6k10wa9fsn1v9bdk95jfkjfyna71vc2"; depends=[boot dplyr fossil igraph mcclust mclust Rcpp Rdpack truncnorm]; }; clustDRM = derive2 { name="clustDRM"; version="0.1-0"; sha256="1c5z08a15scp3nrwyh0c03pdaawvm3ivbygqpbglwxim7zf73rd2"; depends=[caret doParallel DoseFinding DT foreach IsoGene MCPMod multcomp ORCME ORIClust pheatmap RColorBrewer readr shiny]; }; clustEff = derive2 { name="clustEff"; version="0.2.0"; sha256="0kh3jzzqnchkgp0w1pz2sjxr215lyjh62v5857g94h91h5kn70y6"; depends=[cluster fda ggplot2 ggpubr qrcm]; }; clustMD = derive2 { name="clustMD"; version="1.2.1"; sha256="0w4s9dab2mm5x0xibyl6s101c64if945a2cmwin9psd95p76mcny"; depends=[ggplot2 MASS mclust msm mvtnorm reshape2 truncnorm viridis]; }; @@ -7310,6 +7326,7 @@ in with self; { clustcurv = derive2 { name="clustcurv"; version="2.0.1"; sha256="1xkl84pd1a3phl5yfm21yr5c0gbmmg1wk9b0lyl2x8466v5hl53q"; depends=[doParallel doRNG foreach ggfortify ggplot2 Gmedian npregfast RColorBrewer survival]; }; cluster = derive2 { name="cluster"; version="2.1.2"; sha256="168l653ygkg21fwrqrf7lsqi5p6jzhgmcvhrwv7lznkdzdhag2jw"; depends=[]; }; cluster_datasets = derive2 { name="cluster.datasets"; version="1.0-1"; sha256="0i68s9305q08fhynpq24qnlw03gg4hbk4184z3q3ycbi8njpr4il"; depends=[]; }; + clusterCons = derive2 { name="clusterCons"; version="1.2"; sha256="1k1y6cqpb5fyi2mbx2i4jbiwz0fni44lnq0xnv3pl0x3dpscwh6q"; depends=[apcluster cluster lattice RColorBrewer]; }; clusterCrit = derive2 { name="clusterCrit"; version="1.2.8"; sha256="10pz1bikdbkm2ky3xnagp0qv60whalavp6j39b4p7d75jj5xcxgk"; depends=[]; }; clusterGeneration = derive2 { name="clusterGeneration"; version="1.3.7"; sha256="0p1dwl08bf20h7pnspnsycrp3v48nm2miwcnlklyc4gdyzc2jksk"; depends=[MASS]; }; clusterGenomics = derive2 { name="clusterGenomics"; version="1.0"; sha256="127hvpg06is4x486g1d5x7dfkrbk7dj35qkds0pggnqxkq3wsc1c"; depends=[]; }; @@ -7336,12 +7353,12 @@ in with self; { cmaRs = derive2 { name="cmaRs"; version="0.1.1"; sha256="0y9p1r58q45adsb60fvdvqn6m0a6ad32vl15fsy9l83r7aimcwci"; depends=[AUC earth Matrix Rmosek Ryacas0 stringr]; }; cmaes = derive2 { name="cmaes"; version="1.0-11"; sha256="1hwf49d1m660jdngqak9pqasysmpc4jcgr8m04szwbyzyy6xrm5k"; depends=[]; }; cmaesr = derive2 { name="cmaesr"; version="1.0.3"; sha256="03zx2nrw24wmmjjpyh8pswasjjq0amf0g375fm2b3s111dx8fbj9"; depends=[BBmisc checkmate ggplot2 ParamHelpers smoof]; }; - cmcR = derive2 { name="cmcR"; version="0.1.8"; sha256="06sxfmwrwplw0zghajaygzjlbl9cbnazn0sbff6n73ia8pl3yxkr"; depends=[assertthat dplyr ggnewscale ggplot2 imager magrittr purrr quantreg rlang scales stringr tibble tidyr x3ptools zoo]; }; + cmcR = derive2 { name="cmcR"; version="0.1.9"; sha256="06pw7lbp85xfnglcc86h1b4ipy1igvf43ihpqm9m67d4jc9r6acs"; depends=[assertthat dplyr ggnewscale ggplot2 imager magrittr purrr quantreg rlang scales stringr tibble tidyr x3ptools zoo]; }; cmce = derive2 { name="cmce"; version="0.1.0"; sha256="0d52ci906zbd4q43qylcyw93acxh7f20jn3r0k74ynyy47131dnd"; depends=[]; }; cmdfun = derive2 { name="cmdfun"; version="1.0.2"; sha256="1pbcq7hi2lcmqnghmy3q2fsk0c9fy5m0637acyzmc096fxbx723j"; depends=[magrittr purrr R_utils rlang testthat usethis]; }; cmenet = derive2 { name="cmenet"; version="0.1.1"; sha256="0f7bci6nn63q243i7wvhr9mqlf64gw8w042nc1lqb986p7zfxihk"; depends=[glmnet hierNet MASS Rcpp RcppArmadillo sparsenet]; }; - cmfrec = derive2 { name="cmfrec"; version="3.3.1"; sha256="1rqma93wwmhn7zq8y48a46y74hx73xzc2x43nxn3qm1yk2wxifm3"; depends=[]; }; - cml = derive2 { name="cml"; version="0.0.1"; sha256="18zzb1vldgn61jlds7p79wr13jl13q9icfiraj33kwdmx3q6yh2c"; depends=[MASS vegan]; }; + cmfrec = derive2 { name="cmfrec"; version="3.4.2"; sha256="0qg2ssrijfsrpr4gl0rri7kxyf1s8ifdvsizpxm5r8srl0j64hq1"; depends=[]; }; + cml = derive2 { name="cml"; version="0.0.2"; sha256="0i1c9xfrb5d5krza5p88cvnhkswp49csihy6ijwxqmqk20g78r3c"; depends=[MASS vegan]; }; cmm = derive2 { name="cmm"; version="0.12"; sha256="0q6hs56hhi9vaanx7i7gg7ncv0h29lndla66g9chzmh3lchq3r20"; depends=[]; }; cmmr = derive2 { name="cmmr"; version="0.1.2"; sha256="0nik1pzd1rckalvn7xh6s699kkdjnra3q3bn5x16c1lmpz5bp2s4"; depends=[httr progress RJSONIO]; }; cmna = derive2 { name="cmna"; version="1.0.5"; sha256="161qc7q88ajm3l62bq03lpf35bdii1w1d111085zvs3hrf09iybw"; depends=[]; }; @@ -7365,6 +7382,7 @@ in with self; { cns = derive2 { name="cns"; version="0.1.0"; sha256="1kn1cq32pp05ag22n7iwjxn6lxpqn443npzk6vdskjm5pbnsc33k"; depends=[]; }; cnum = derive2 { name="cnum"; version="0.1.3"; sha256="0iphbx5ii4ij0bi9nqdz793i4gk2164jlgz5xn8yzsayjmizhdk2"; depends=[BH Rcpp stringr]; }; coRanking = derive2 { name="coRanking"; version="0.2.3"; sha256="09dq4xxpi632jb9vh96rsy2g51sn6apbccx9c8073hfsm078b4w6"; depends=[]; }; + coala = derive2 { name="coala"; version="0.6.1"; sha256="0c29bwlls22gfkxyc51gx1fnk8725327j6kfvrjcg5ckyw5ydqhq"; depends=[assertthat digest R6 Rcpp RcppArmadillo rehh scrm]; }; coalescentMCMC = derive2 { name="coalescentMCMC"; version="0.4-1"; sha256="0xxv1sw5byf84wdypg5sfazrmj75h4xpv7wh4x5cr9k0vgf80b3s"; depends=[ape coda lattice Matrix phangorn]; }; coalitions = derive2 { name="coalitions"; version="0.6.20"; sha256="0v9345xscfdyn5qdj6ncwzbbpry942dlly91l997ba42f9j6qdjk"; depends=[checkmate dplyr ggplot2 gtools jsonlite lubridate magrittr purrr RCurl rlang rvest stringr tibble tidyr xml2]; }; coarseDataTools = derive2 { name="coarseDataTools"; version="0.6-6"; sha256="1g9hxyp2vdhq1zr18qlf2aqwp9d9hr07k6grmvblj2xrwlzfvc1p"; depends=[MCMCpack]; }; @@ -7409,19 +7427,19 @@ in with self; { cohorttools = derive2 { name="cohorttools"; version="0.1.4"; sha256="1zpf3qgzkn34wc36r89ymzfx4fvlgl7x1yiwdwzzd20xv3nx2b5h"; depends=[cmprsk DiagrammeR DiagrammeRsvg Epi ggplot2 rsvg survival]; }; coil = derive2 { name="coil"; version="1.2.3"; sha256="023sn4waf8wb99ryxf0biag8rfg3j3sslf8fw7d00llzci8px5zj"; depends=[ape aphid seqinr]; }; coin = derive2 { name="coin"; version="1.4-2"; sha256="1cpv7jx840inzg98bkhrb5yscx0gpag6br237r5qpnc2gbrd2ikm"; depends=[libcoin matrixStats modeltools multcomp mvtnorm survival]; }; - coinmarketcapr = derive2 { name="coinmarketcapr"; version="0.3.2"; sha256="0n62kcw7yxpvxd2bzki432cis5rvfw8b8syfvgv5wpq53bavq3px"; depends=[cli crayon curl data_table ggplot2 jsonlite]; }; + coinmarketcapr = derive2 { name="coinmarketcapr"; version="0.4"; sha256="1h95fm32w03gxjka71n41lxkinfwpal4dl6hmhfdph8wywn7y50j"; depends=[cli crayon curl data_table ggplot2 jsonlite]; }; cointReg = derive2 { name="cointReg"; version="0.2.0"; sha256="0n4s809avhlrmrjdqzc2s752m7x96c4432gnjd4qv77r2nns7dw4"; depends=[checkmate MASS matrixStats]; }; cointmonitoR = derive2 { name="cointmonitoR"; version="0.1.0"; sha256="0rsacvib9prgb199m5ndi0zlgfsvf1giqc5s41wp0yvxdxjdq5lw"; depends=[cointReg matrixStats]; }; cold = derive2 { name="cold"; version="2.0-3"; sha256="1y2l1v7s1v3m4nhlnl72n075h53vm93vxmfn4b6269n690wl9s6d"; depends=[cubature MASS]; }; colf = derive2 { name="colf"; version="0.1.3"; sha256="1av82yrp6csw7700ymipd02j73cmzn0apv7ykachjw09nzk86kvj"; depends=[nlsr]; }; collUtils = derive2 { name="collUtils"; version="1.0.5"; sha256="0gbk3lrb2lwq2ixrpcngng6qz6axjb4iyqy5606x1zmjm71c060p"; depends=[Rcpp rJava]; }; - collapse = derive2 { name="collapse"; version="1.7.5"; sha256="13n6k0mairlzmkklq322ms8yzflcb4hphllyby6wjdbql6d3z0w9"; depends=[Rcpp]; }; + collapse = derive2 { name="collapse"; version="1.7.6"; sha256="0hyxdmy3nm1jwls6h6q487hsx5yjiiy2l3wy1x29k4k69fc3xkxw"; depends=[Rcpp]; }; collapsibleTree = derive2 { name="collapsibleTree"; version="0.1.7"; sha256="0b65pbp1wnpsrayqi630ds4r98jvcvynnlp6wxdqrnnr9nzw5343"; depends=[data_tree htmlwidgets]; }; collateral = derive2 { name="collateral"; version="0.5.2"; sha256="1wnzgpayjsqnqry0cdmkijyjkkjhbc8hxwlkx7aj9qwaiz7wiibr"; depends=[crayon pillar purrr]; }; collectArgs = derive2 { name="collectArgs"; version="0.4.0"; sha256="0fz5w1xsxiddzrwahrg50px4igyhd4plq655jaix6grancs7kvix"; depends=[magrittr]; }; collections = derive2 { name="collections"; version="0.3.5"; sha256="053ig88pva78wxxwya3v7cz853k563dkpgxrf2xvd0l0d9fanxmz"; depends=[]; }; collidr = derive2 { name="collidr"; version="0.1.3"; sha256="18ki8mwf5ihbgfbhdbbk9ljs44js3rqgl1g6g3ch6dynz61sr6hn"; depends=[dplyr jsonlite stringr]; }; - collin = derive2 { name="collin"; version="0.0.1"; sha256="08yg1gdp04l5rxkyvm784n2iqszgb4rlsv3b46n5bzwr334nmsav"; depends=[dlnm MASS mgcv nlme VGAM]; }; + collin = derive2 { name="collin"; version="0.0.2"; sha256="12gxndq5xqfvc9m10y6pjf99npr65dp1fhpy5lg9wnq7r4zv2610"; depends=[dlnm MASS mgcv nlme VGAM]; }; collpcm = derive2 { name="collpcm"; version="1.2"; sha256="0v7a6mjchkahmxyf68ii051s1hvarb6knkmnhq5lfw8n4bdxh39x"; depends=[gtools latentnet network]; }; colmozzie = derive2 { name="colmozzie"; version="1.1.1"; sha256="0sn7dqg7rnddnmdb10c6scws6kgi1lz4lw8nc698x63z431ah1p8"; depends=[]; }; coloc = derive2 { name="coloc"; version="5.1.0"; sha256="1sxcav8z988x40883qayylvzg9wrnh84x6vv7r8jc1jxyk76abws"; depends=[data_table ggplot2 susieR viridis]; }; @@ -7446,7 +7464,7 @@ in with self; { colorpatch = derive2 { name="colorpatch"; version="0.1.2"; sha256="18p9hgccp37pbdf437xffkv6z500896v08fsw2jm8zcl9ladygaf"; depends=[colorspace ggplot2 gridExtra TSP]; }; colorr = derive2 { name="colorr"; version="1.0.0"; sha256="1wwrgb9fc9gzxxwxrdrkwwrmhqqllv29wr4q8y1shj9d3nzcpwmh"; depends=[]; }; colorscience = derive2 { name="colorscience"; version="1.0.8"; sha256="11fy8545g93b8dn2imihsb031lnf5g5z17km8q07q4y6g96xdbdv"; depends=[Hmisc pracma sp]; }; - colorspace = derive2 { name="colorspace"; version="2.0-2"; sha256="0fhq2aykdkxh3r90i8aqjyb37p5api3mjd19ch8mzv99q4pcv4dq"; depends=[]; }; + colorspace = derive2 { name="colorspace"; version="2.0-3"; sha256="0zw52s8g2gxp8i1ax96azxmxqrbhb7aad5px0c1vgr6n9p682mp7"; depends=[]; }; colortools = derive2 { name="colortools"; version="0.1.5"; sha256="0z9sx0xzfyb5ii6bzhpii10vmmd2vy9vk4wr7cj9a3mkadlyjl63"; depends=[]; }; colourlovers = derive2 { name="colourlovers"; version="0.3.6"; sha256="13fqn6hbqjk3d8krpqb3hmsq06qrbks8a9ia5441hd6m7m8wjjkc"; depends=[httr jsonlite png XML]; }; colourpicker = derive2 { name="colourpicker"; version="1.1.1"; sha256="1q1wi3g403fbzp4ys3gsjbwdc86x770cx323qgi47ca8n219kl50"; depends=[ggplot2 htmltools htmlwidgets jsonlite miniUI shiny shinyjs]; }; @@ -7467,7 +7485,7 @@ in with self; { cometr = derive2 { name="cometr"; version="0.2.0"; sha256="0fbg1lfw0q4lfk4svflfwjfmwxbrdvmrvxry90xp39i7g8zd2ahd"; depends=[callr httr jsonlite R_utils R6 yaml]; }; comf = derive2 { name="comf"; version="0.1.10"; sha256="0iimah487k6wf9sf4y39ldlm8ww017629bj8115ri9ffp0353g33"; depends=[plyr reshape]; }; commentr = derive2 { name="commentr"; version="1.0.4"; sha256="0anlcbk8rj0yr8i23qmr6v5ws0695nkc3mvgr6pnq1fg2d4c4brj"; depends=[stringr]; }; - commonmark = derive2 { name="commonmark"; version="1.7"; sha256="024iz1qp2kv6iz6y69ir0jk3qhjps86rhkzlcmhqsxx97rx7cjni"; depends=[]; }; + commonmark = derive2 { name="commonmark"; version="1.8.0"; sha256="0s765c650id19ygx57bsjsw93fwxywmp50zid671bkxi6wlyf1vx"; depends=[]; }; commonsMath = derive2 { name="commonsMath"; version="1.2.5"; sha256="1c4lgmggpc22mhwcpy521b2pg8wf4bbjp0a6rbcn0aki90xw9ckk"; depends=[]; }; communication = derive2 { name="communication"; version="0.1"; sha256="08fkllwwcw2llpg5ivxhqghc88qfg1vdy0ciif3xazhhymb8wavb"; depends=[abind diagram GGally ggplot2 gtable gtools igraph magrittr plyr purrr RColorBrewer Rcpp RcppArmadillo reshape2 scales signal tuneR useful wrassp]; }; comorbidity = derive2 { name="comorbidity"; version="1.0.0"; sha256="0cv3gay7mxba8kr19580dv7vyqlacdybxf5a2y96ll43g64w1gyp"; depends=[checkmate data_table stringi]; }; @@ -7534,23 +7552,24 @@ in with self; { conflicted = derive2 { name="conflicted"; version="1.1.0"; sha256="1qg9ar114r98wm0pnf65mss4v2ksq3924rlpm13mqp4s3p6j9yi4"; depends=[memoise rlang]; }; conflr = derive2 { name="conflr"; version="0.1.1"; sha256="1bjdmvi0n8746g7dxwgzh3fi33sq4bgfr0nd3nqd2caj8ryi2gv9"; depends=[askpass commonmark curl glue httr knitr miniUI purrr R6 rlang rmarkdown rstudioapi shiny stringi xml2]; }; conformalClassification = derive2 { name="conformalClassification"; version="1.0.0"; sha256="03v6xbgipb97byarqj0d38z9yb2g54mkkw343jxmi2j058z26yw7"; depends=[doParallel foreach mlbench randomForest]; }; - conformalInference_fd = derive2 { name="conformalInference.fd"; version="1.0.0"; sha256="15ck2vi5zkf4y7y91n380v0ywjdgs9l2arw1rqyf9nr2n9j45wd0"; depends=[fda future future_apply ggplot2 gridExtra]; }; - conformalInference_multi = derive2 { name="conformalInference.multi"; version="1.0.0"; sha256="1mriq2jkh8qzd04842jbza30yfbbs9cjypmdhr293msa6fjsad01"; depends=[future future_apply ggplot2 glmnet gridExtra hrbrthemes]; }; + conformalInference_fd = derive2 { name="conformalInference.fd"; version="1.1.0"; sha256="00qdkp70ncwxqgj847yyak3lgfirjh3m81fapjww588hq34wds1v"; depends=[fda future future_apply ggplot2 gridExtra]; }; + conformalInference_multi = derive2 { name="conformalInference.multi"; version="1.1.0"; sha256="1bixhwm8jrsrixzk80dp8m0kq85pmqjadj2hwwcqc2amyspcfbs7"; depends=[future future_apply ggplot2 glmnet gridExtra hrbrthemes]; }; confoundr = derive2 { name="confoundr"; version="1.2"; sha256="000vf828qv04pplx8yc8q3mafxf4g0axip6z5zbsj2581yxv9jjh"; depends=[dplyr ggplot2 gridExtra magrittr purrr rlang Rmpfr scales stringr tidyr]; }; confreq = derive2 { name="confreq"; version="1.5.6-4"; sha256="0mi6panjdvgpxwpylg6s3bhx9679jpqrxsicb14lq1w6c20rg7qj"; depends=[gmp vcd]; }; conicfit = derive2 { name="conicfit"; version="1.0.4"; sha256="1d704xgiyqmbwfxnsmhqg885x10q8yqxmrk4khqpg3lh696bw97d"; depends=[geigen pracma]; }; conics = derive2 { name="conics"; version="0.3"; sha256="06p6dj5dkkcy7hg1aa7spi9py45296dk0m6n8s2n3bzh3aal5nzq"; depends=[]; }; conjoint = derive2 { name="conjoint"; version="1.41"; sha256="1iq3226a6fn1gddmh2nxlzvjcvbj7502r9520g9d4xdmk8smfx33"; depends=[AlgDesign broom cluster fpc ggfortify ggplot2]; }; conjurer = derive2 { name="conjurer"; version="1.4.0"; sha256="0llvqjg0rrd75n1gz9b1njizs6s1mgygcv7hmalknqibvxd185ac"; depends=[]; }; - conleyreg = derive2 { name="conleyreg"; version="0.1.6"; sha256="1q4i87l1bq17km0c60jm0585dsly05i85wddd2hbprkv5llxwbyp"; depends=[data_table doParallel fixest foreach lmtest lwgeom Matrix Rcpp RcppArmadillo Rdpack s2 sf]; }; + conleyreg = derive2 { name="conleyreg"; version="0.1.7"; sha256="1mvbzqd83vd54ig4kbi1v3h4v0j6pyj8a5ja1f3w2n7k8aszy748"; depends=[data_table doParallel fixest foreach lmtest lwgeom Matrix Rcpp RcppArmadillo Rdpack s2 sf]; }; conmet = derive2 { name="conmet"; version="0.1.0"; sha256="0iwr8mmh9lk0psqxkgnd7ldhg57ivbkv0b3a18gli06983mhzjdc"; depends=[dplyr DT foreign Hmisc lavaan openxlsx purrr semTools shiny shinydashboard shinyWidgets stringr summarytools waiter]; }; connectwidgets = derive2 { name="connectwidgets"; version="0.1.1"; sha256="0sj8nik6dyyzflpq9vqd8wzlhky6jl2wfiaz788i6a2wdhckyc1m"; depends=[bslib crosstalk digest dplyr glue htmltools htmlwidgets httr jsonlite magrittr purrr R6 reactable reactR rlang sass tibble]; }; conogive = derive2 { name="conogive"; version="1.0.0"; sha256="0a8v7v0fds0psfnbx9x45way8z1f1xn2ncgbrn5rb6fjq0a1zs4x"; depends=[assertthat checkmate mvtnorm psych]; }; conos = derive2 { name="conos"; version="1.4.5"; sha256="1c2yn3nsvwwglgxghnrybmkcvdc16gxxbcfqfnp70q4h6nz7f65g"; depends=[abind ComplexHeatmap cowplot dendextend dplyr ggplot2 ggrepel gridExtra igraph irlba leidenAlg magrittr Matrix Matrix_utils N2R R6 Rcpp RcppArmadillo RcppEigen RcppProgress reshape2 rlang Rtsne sccore]; }; conover_test = derive2 { name="conover.test"; version="1.1.5"; sha256="0f1p10klidk1xic1wd48j9rjh2fb3z6pfjx4y021lglx1w3av68k"; depends=[]; }; - conquer = derive2 { name="conquer"; version="1.2.1"; sha256="0i9g27f52zl2kb2392g0y614drf6s87dqz12aphj889ajq7zjm0k"; depends=[caret Matrix matrixStats Rcpp RcppArmadillo]; }; + conquer = derive2 { name="conquer"; version="1.2.2"; sha256="1z07p4xcrxvnicwgga7hqvqzcxavwirw828285i0xlnz54rqhsc8"; depends=[Matrix matrixStats Rcpp RcppArmadillo]; }; conquestr = derive2 { name="conquestr"; version="0.8.5"; sha256="1xh09a379g1msib5fvf72llvf2gwqb7ciacw7j7iqrkb2ddpaglk"; depends=[ggplot2 ggrepel Rcpp reshape rlang stringr]; }; conserveR = derive2 { name="conserveR"; version="1.0.4"; sha256="05b1pqgbd9sh4lyg9zqjfg4019dqp8xj3k1w31qqdld8m3g5lrd6"; depends=[cowplot GGally ggplot2 ggrepel magrittr network rlang scales sna]; }; + consolechoice = derive2 { name="consolechoice"; version="1.0.0"; sha256="0f1ac4k3w2qkxhzxqsm9v9wanq27g0fr77g63zy84b38c9zkmgch"; depends=[]; }; consort = derive2 { name="consort"; version="1.0.1"; sha256="16i7hd433f3lfs6saa20m2jk9926r9jaln74333dmx5ld0294q99"; depends=[]; }; consortr = derive2 { name="consortr"; version="0.9.1"; sha256="1c71wvr7sckrv4k65l71l160z6d9amzyydbi6mf2b79zh9zv8g1g"; depends=[data_table DiagrammeR dplyr magrittr purrr rlang shiny shinydashboard tibble]; }; constants = derive2 { name="constants"; version="1.0.1"; sha256="11nliijwphqphik95b3xpawpjg7w4s089wdhjci5bw4va4bgd1xm"; depends=[]; }; @@ -7559,7 +7578,7 @@ in with self; { contTimeCausal = derive2 { name="contTimeCausal"; version="1.0"; sha256="1lyiy0hs5xms6hgr7cv5cxh7v09612qsknjwmrr8w07y0h37qg5l"; depends=[dplyr survival zoo]; }; contact = derive2 { name="contact"; version="1.2.8"; sha256="1db3vgjlz0ivw3sx37mwy7ngjx0in3rxlm3i3akh4xzbfp9gjj87"; depends=[ape data_table doParallel foreach igraph lubridate raster rgdal rgeos sp]; }; contactdata = derive2 { name="contactdata"; version="0.2.0"; sha256="1hcibqkfisv28d38ymgvmkkbs4jl3lbp2safyd5abf185043263d"; depends=[]; }; - container = derive2 { name="container"; version="1.0.0"; sha256="0yr06z6vdz1qz7vp3hf1zqnk0n2g77iaq9nfx6r9275m5v2hl6iw"; depends=[data_table R6]; }; + container = derive2 { name="container"; version="1.0.1"; sha256="0a8wlszclnl2hm15mgrq25mkq13x890qv2mg9rqx8ns7953829sa"; depends=[data_table R6]; }; contentid = derive2 { name="contentid"; version="0.0.15"; sha256="0r5lrq82vfv698g8md8kdhl83gi8rx5hrhk2qddykxlxk4krzagi"; depends=[curl fs httr openssl]; }; contfrac = derive2 { name="contfrac"; version="1.1-12"; sha256="0sq5c7ny235yrkv2xc4insgxby6rvzc1qsj8h301cd2if3lwbgwm"; depends=[]; }; conting = derive2 { name="conting"; version="1.7"; sha256="08f271j3gxcp4shda08kkv0v9ayaadvxgcglfsn6hjmw4hn298zg"; depends=[BMS coda gtools mvtnorm tseries]; }; @@ -7568,7 +7587,7 @@ in with self; { contourPlot = derive2 { name="contourPlot"; version="0.2.0"; sha256="0bjwq3p57d6hadln8vwjkh7c9sbb466h3zcq9kpx7kd31z6x8gnz"; depends=[interp RColorBrewer]; }; contoureR = derive2 { name="contoureR"; version="1.0.5"; sha256="1izq1alkf24zd2sf2ir2adyrkwhdj7n89cv6z0dfh5mfqld5bkdn"; depends=[geometry plyr Rcpp reshape]; }; contrast = derive2 { name="contrast"; version="0.24.1"; sha256="1119c7p8ly3zb5pxzgridqvmbq5v0jx557qqaa0rbmdr7rih74aq"; depends=[nlme rms sandwich]; }; - contribution = derive2 { name="contribution"; version="0.2.0"; sha256="0di6jhljdfvzpifnb3pvyn2la5h5r1dw03dx4zhpn4y10dg6898p"; depends=[dplyr ggplot2 gh magrittr rlang tidyr]; }; + contribution = derive2 { name="contribution"; version="0.2.1"; sha256="1m9bjpmf1ljygjlx3jg8hvnrq6sxx1cscg30dc3phpnj3w55jxln"; depends=[dplyr ggplot2 gh magrittr rlang tidyr]; }; control = derive2 { name="control"; version="0.2.5"; sha256="02s8h5kwpzfrivx3ign84gwlybkcs03ibawyxdny9zz5yhb7x3bs"; depends=[expm Matrix pracma signal]; }; controlTest = derive2 { name="controlTest"; version="1.1.0"; sha256="19r8nvi35ldzgayifskjj706fv76hv6sj68yvggybp27rgyqbjfl"; depends=[survival]; }; convdistr = derive2 { name="convdistr"; version="1.5.3"; sha256="1cp2qpyl0jxp0lwznlc94mcigfgysyq9xmi1z7ihd7jxd9mk8aw9"; depends=[dplyr extraDistr ggplot2 MASS pryr RColorBrewer SHELF shiny tidyr]; }; @@ -7581,7 +7600,7 @@ in with self; { convey = derive2 { name="convey"; version="0.2.4"; sha256="0khhnvazslvv7ma4fk70qzcazgv1aair1vcvx22bsic2mvgdb0fc"; depends=[survey]; }; convoSPAT = derive2 { name="convoSPAT"; version="1.2.7"; sha256="1pmiirigjdkrb3pzqcw6qlh6418z384mvaxqw5mrcm1gxzrqp649"; depends=[ellipse fields MASS plotrix StatMatch]; }; cooccur = derive2 { name="cooccur"; version="1.3"; sha256="1wlaghhi4f3v8kzwhcgq3c6as7v3zlpkzhb232qz1amr7f0058kv"; depends=[ggplot2 gmp reshape2]; }; - cooltools = derive2 { name="cooltools"; version="1.6"; sha256="1zll98ys9i7vcyqfqkrzyrzdvryrgig5isgdzgimmyxa1l0si3gv"; depends=[bit64 celestial cubature data_table jpeg magicaxis MASS plotrix png pracma raster Rcpp sp]; }; + cooltools = derive2 { name="cooltools"; version="1.7"; sha256="147hpa1vavs51fp0r8siyf0g3830g5ngs1nwd5a4nrahzl6f1jn4"; depends=[bit64 celestial cubature data_table jpeg magicaxis MASS plotrix png pracma raster Rcpp sp]; }; coop = derive2 { name="coop"; version="0.6-3"; sha256="0ww99ssgawsgn6rqy838wbx6iirzdrzyxirvz084ih8j50blx420"; depends=[]; }; coopProductGame = derive2 { name="coopProductGame"; version="2.0"; sha256="1348pgqfvvysdixsjibgkvwjsmqasnlmwf9kyr39lw8jb81z25h0"; depends=[dplyr GameTheory ggplot2 gtools kappalab lpSolveAPI]; }; cooptrees = derive2 { name="cooptrees"; version="1.0"; sha256="0izvwna1jsqik3v5fz1r4c86irvma42clw0p4rdvwswv5pk698i1"; depends=[gtools igraph optrees]; }; @@ -7618,7 +7637,7 @@ in with self; { corona = derive2 { name="corona"; version="0.3.0"; sha256="1hggsmvmbim7f6bybmdhxznmqib0k2plm370mjs7dp85i564sjkm"; depends=[gganimate ggplot2 gridExtra plyr qicharts2 reshape2]; }; coronavirus = derive2 { name="coronavirus"; version="0.3.31"; sha256="187k5phjxkzkkgszrww0ayk50n399bxa83r59h3whk81788hdmwf"; depends=[devtools]; }; corpcor = derive2 { name="corpcor"; version="1.6.10"; sha256="028fw61n61i79fhnaqx7gmdifdpbvp3yiaq9vvfrbv4k7i84r83i"; depends=[]; }; - corpora = derive2 { name="corpora"; version="0.5"; sha256="0b4yw37msx9h8hf5mjs4h10gdmc1qc2gv5bzyj1r90n4gcli042d"; depends=[]; }; + corpora = derive2 { name="corpora"; version="0.5-1"; sha256="1bkmarwxqfb4jf7aa1x82lhykmy25z1pknfmq1g1g789g074090k"; depends=[]; }; corporaexplorer = derive2 { name="corporaexplorer"; version="0.8.4"; sha256="0ffickzig9798273gm401ma0lm32zgcd5p549935gfgbyjlxzxps"; depends=[data_table dplyr ggplot2 lubridate magrittr padr plyr RColorBrewer rlang rmarkdown scales shiny shinydashboard shinyjs shinyWidgets stringi stringr tibble tidyr]; }; corpus = derive2 { name="corpus"; version="0.10.2"; sha256="0fxa38xbd5fyhh0q1ycx8snj7ly8hv9jclbs77agkb6pb6p7yr64"; depends=[utf8]; }; corpustools = derive2 { name="corpustools"; version="0.4.9"; sha256="0239nx4r8q3jkzymr3l2zc9y0b75frp7rxn2wl6rv721p33dbykr"; depends=[data_table digest igraph Matrix pbapply quanteda R6 Rcpp RcppProgress RNewsflow rsyntax SnowballC stringi tokenbrowser udpipe wordcloud]; }; @@ -7628,7 +7647,7 @@ in with self; { corrcoverage = derive2 { name="corrcoverage"; version="1.2.1"; sha256="0r5n2g341jlinwrxxwxkav9i6qsf097pmfi07aiq663b13r3864x"; depends=[data_table magrittr matrixStats Rcpp RcppArmadillo]; }; correctedAUC = derive2 { name="correctedAUC"; version="0.0.3"; sha256="0c2kq7asq5mp48p8niqb84wnw4q2q2985wxbrywrhsszm9p3xspb"; depends=[ICC mnormt]; }; corregp = derive2 { name="corregp"; version="2.0.2"; sha256="1v048dibn2x3y5mi2damcsr9i5kdig5n53g5j9gf31lqkzzjmnh3"; depends=[data_table diagram ellipse gplots rgl]; }; - correlation = derive2 { name="correlation"; version="0.7.1"; sha256="03ghgaf7c6zjsa5j3916l4f5fq4b6i1hn7g3njgzq2z2zz8nd5yn"; depends=[bayestestR datawizard insight parameters]; }; + correlation = derive2 { name="correlation"; version="0.8.0"; sha256="0gpdif7pp12iacs06njqcvis93qfanpf8awzdy1f6kjn0rc2wrim"; depends=[bayestestR datawizard insight parameters]; }; correlationfunnel = derive2 { name="correlationfunnel"; version="0.2.0"; sha256="0xil7cihqk7gzpy0q97sg5sw5z0gy7zqvx0f0bizcfks9gwp43cv"; depends=[cli crayon dplyr forcats ggplot2 ggrepel magrittr plotly purrr recipes rlang rstudioapi stringr tibble tidyr]; }; correlbinom = derive2 { name="correlbinom"; version="0.0.1"; sha256="1ix3ccxzr7vqblbda5awsva3h95b69v7kc6adz622bbi8r36xxcq"; depends=[Rmpfr]; }; corrgram = derive2 { name="corrgram"; version="1.14"; sha256="12dhvwaprdmzxxk52w8sb3cx99dmzb9yhcm01pri0vcz671p57v1"; depends=[]; }; @@ -7706,6 +7725,8 @@ in with self; { cpa = derive2 { name="cpa"; version="1.0"; sha256="14kcxayw4cdbjfa6bvfzqp8flwc0sr3hmh2dnr1dfax0hnccd71m"; depends=[]; }; cpca = derive2 { name="cpca"; version="0.1.2"; sha256="1pccsjahb1qynnxa0akhfpcmhfmdg4rd1s6pfqrdl7bwbcmq4lqf"; depends=[]; }; cpd = derive2 { name="cpd"; version="0.1.0"; sha256="1qcyb7n69ppa0py7w31msim7gf2wdh94hmsilsdk8ivxljc1gv8n"; depends=[fAsianOptions Rdpack]; }; + cpfa = derive2 { name="cpfa"; version="1.0-0"; sha256="06aiq9zq4471hajzca15vs79nwsk4q3bbi5fh6vz0qra50i64ang"; depends=[doParallel e1071 foreach glmnet multiway randomForest]; }; + cpi = derive2 { name="cpi"; version="0.1.4"; sha256="1gz92jcl8wg2vp8qhnkn37l2xs8wjdbjvnga22v9n943k9zsk2kh"; depends=[foreach knockoff lgr mlr3]; }; cpk = derive2 { name="cpk"; version="1.3-1"; sha256="1njmk2w6zbp6j373v5nd1b6b8ni4slgzpf9qxn5wnqlws8801n73"; depends=[]; }; cplm = derive2 { name="cplm"; version="0.7-9"; sha256="057m61rq2hzb55imj3922zmc9kjxh053k3kgy54a4l0jlxb90lyj"; depends=[biglm coda ggplot2 Matrix minqa nlme reshape2 statmod tweedie]; }; cpm = derive2 { name="cpm"; version="2.3"; sha256="07zbvc5jkwv76lkzby6r073fxjsqgnrdl2w9lcph577knnip89jx"; depends=[]; }; @@ -7714,7 +7735,7 @@ in with self; { cpr = derive2 { name="cpr"; version="0.2.3"; sha256="1a2lza1bw74xzrs17a9gr9mnpvnnrykhwd73yqi63wp3k4sm42rb"; depends=[dplyr ggplot2 lazyeval lme4 magrittr plot3D Rcpp RcppArmadillo rgl tibble tidyr]; }; cprobit = derive2 { name="cprobit"; version="1.0.2"; sha256="16fnndpkd226paahmadsddakj4yhybw7lp3csr73fwv78zfl2fj9"; depends=[car ggplot2 gridExtra nortest]; }; cprr = derive2 { name="cprr"; version="0.2.0"; sha256="049xnma0rdnya7zp05iraq15nwjgmdmli9g7xxprab822047vld7"; depends=[]; }; - cpsR = derive2 { name="cpsR"; version="0.4.5"; sha256="1maqc5lr21h59wk4449zl8b8p9fzp9z6va52mc3k6z4sq4f784na"; depends=[httr jsonlite tibble]; }; + cpsR = derive2 { name="cpsR"; version="0.5.0"; sha256="0mfagw8in5qn48mwglvrfs5h8vkyz69hxrq9klfdd84x2wys5n30"; depends=[httr jsonlite tibble]; }; cpss = derive2 { name="cpss"; version="0.0.2"; sha256="1a6nphzf9y1p1ic51f0zll6g3j3flr7szrvzac1w4a023fj7301r"; depends=[dplyr ggplot2 gridExtra magrittr mvtnorm Rcpp RcppArmadillo Rfast rlang tibble tidyr]; }; cpsurvsim = derive2 { name="cpsurvsim"; version="1.2.1"; sha256="1wsb5hrds0ym49r0lyb3l37q1qpqy4qjhqcyd7awavdx2pk94pgi"; depends=[Hmisc knitr plyr]; }; cpsvote = derive2 { name="cpsvote"; version="0.1.0"; sha256="0nmg79isqwvxyg7zkfbshndfjb2fnc2ffg32hxvjvsy714lpljf6"; depends=[dplyr forcats magrittr readr rlang stringr]; }; @@ -7731,10 +7752,9 @@ in with self; { cranlike = derive2 { name="cranlike"; version="1.0.2"; sha256="06xgxgwpmfrwmcd0gnr9prjjbhd1y0ky1zb8yh09v0bvsf6ixnyx"; depends=[DBI debugme desc RSQLite]; }; cranlogs = derive2 { name="cranlogs"; version="2.1.1"; sha256="02d9qrqyjj33naq3g7ykaw9dzzl1dq8qf13id6h7kfx1fvx9b7zd"; depends=[httr jsonlite]; }; cranly = derive2 { name="cranly"; version="0.5.4"; sha256="02g3r8y3yj6pajjzzf7akgpjgg6vnv3mp9pqpqcfrrckvmvysm35"; depends=[colorspace countrycode ggplot2 igraph magrittr stringr tm visNetwork wordcloud]; }; - crantastic = derive2 { name="crantastic"; version="0.1"; sha256="0y2w9g100llnyw2qwjrib17k2r2q9yws77mf6999c93r8ygzn4f5"; depends=[]; }; crassmat = derive2 { name="crassmat"; version="0.0.6"; sha256="1c4ii34vh8y5b3z2maby4cafb3n2m9bnxv3762cy0z12mbg7zk1s"; depends=[svMisc]; }; crawl = derive2 { name="crawl"; version="2.2.1"; sha256="18mr7vp72jj5msj9mbq45jy3f6qhn45azsmkq07i2d30gwdj0c3a"; depends=[dplyr gdistance lubridate magrittr mvtnorm purrr raster Rcpp RcppArmadillo rmapshaper sf shiny sp tibble]; }; - crayon = derive2 { name="crayon"; version="1.4.2"; sha256="0mxq87qsvz5znfncrb6yjchzv6iwpn9lr386i02y6xiycizkjd7f"; depends=[]; }; + crayon = derive2 { name="crayon"; version="1.5.0"; sha256="0m3rckps0c8v14h9vqnr81acv0az1jqwlsradcbkb2ndvnpjq4j4"; depends=[]; }; crch = derive2 { name="crch"; version="1.0-4"; sha256="18qjvh1lkw1f6rrhnb21f30xxrcq8whbs3x1jgkw6q14rf1483ri"; depends=[Formula ordinal sandwich scoringRules]; }; crctStepdown = derive2 { name="crctStepdown"; version="0.2.1"; sha256="1v6r0w9wrwa7hwyyhzdybv1mshdw3wxa098mbn48101dhhy75945"; depends=[fastglm ggplot2 ggpubr lme4 Rcpp RcppArmadillo rlang stringr]; }; credentials = derive2 { name="credentials"; version="1.3.2"; sha256="1f18j3zrq8c9kah57xwahmmljsjg5qphlgamvx507ynvpq8pryig"; depends=[askpass curl jsonlite openssl sys]; }; @@ -7744,7 +7764,7 @@ in with self; { cregg = derive2 { name="cregg"; version="0.4.0"; sha256="1a34jhdk4r9ywsrc5dc8wq5am3059cli60f6n2n8j04ls13fvlkd"; depends=[ggplot2 ggstance lmtest sandwich scales survey]; }; crestr = derive2 { name="crestr"; version="1.0.0"; sha256="1vps3rf2mnzmfzml22cyvi7khgakjx6yzwiziyjdl8dalrhrpwsc"; depends=[clipr DBI plyr raster rgdal rgeos RPostgres scales sp stringr viridis]; }; crfsuite = derive2 { name="crfsuite"; version="0.4"; sha256="0arxbszaf1y8cqgzbq9a5l58n3c3rhjfp78lnhdxg95cdmdzhcfd"; depends=[data_table Rcpp]; }; - cricketdata = derive2 { name="cricketdata"; version="0.1.0"; sha256="1g47f2rskmpb98xq7jc5wbl11414fpyg8jdrbakmzfcvyzfw99cb"; depends=[dplyr lubridate magrittr progress readr rvest stringr tibble tidyr xml2]; }; + cricketdata = derive2 { name="cricketdata"; version="0.1.1"; sha256="1xv85mkln539jp9r7p8gnigiyrwwppi3ska3yjcjbzrl617w0877"; depends=[dplyr lubridate magrittr progress readr rvest stringr tibble tidyr xml2]; }; cricketr = derive2 { name="cricketr"; version="0.0.26"; sha256="1y1zf9f59v95knggq5nna5rp7fqpv1swwvkajwqbpicc12g2azq4"; depends=[dplyr forecast ggplot2 httr lubridate plotrix scatterplot3d XML]; }; crimCV = derive2 { name="crimCV"; version="0.9.6"; sha256="14ckk88i7jk8a7kl51d7qfdis44jng6zz9zd72cdp80a57dvrvzq"; depends=[]; }; crimedata = derive2 { name="crimedata"; version="0.2.0"; sha256="073zlk9b4saz72d33z73mc9qzfk49bxwjhph6zbw27nl38k74j7d"; depends=[digest dplyr httr magrittr purrr readr sf stringr tibble]; }; @@ -7752,7 +7772,7 @@ in with self; { crimeutils = derive2 { name="crimeutils"; version="0.3.0"; sha256="1g7na36k1na7bsq8xqi01ja2fpb09r2davpi56jn5k1lih93kp8k"; depends=[dplyr ggplot2 gridExtra gt magrittr readr rlang scales tidyr]; }; crisp = derive2 { name="crisp"; version="1.0.0"; sha256="1gs8jnd9y9pd55w6kwv9mvmg3wd8hjiw3lwx7k242pxccsxklfxq"; depends=[MASS Matrix]; }; crispRdesignR = derive2 { name="crispRdesignR"; version="1.1.6"; sha256="1h9153iv55qkx9hyf3gs118m99mkzj5mbj6i3jg58chfp0m6jx78"; depends=[BiocGenerics Biostrings DT gbm GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors shiny stringr vtreat]; }; - criticality = derive2 { name="criticality"; version="0.9.0"; sha256="0cv9lxkcc3qjfyyiamglr03csr3z1hd281kysqlknzqvzl0hddly"; depends=[bnlearn caret dplyr evd fitdistrplus ggplot2 keras magrittr reticulate scales]; }; + criticality = derive2 { name="criticality"; version="0.9.1"; sha256="1bi2h56bbrbjybawrxjm724i2rcpla0rmlcf5vp3g5qfmcc4cz15"; depends=[bnlearn caret dplyr evd fitdistrplus ggplot2 keras magrittr reticulate scales]; }; criticalpath = derive2 { name="criticalpath"; version="0.2.0"; sha256="1bnsmns1zrzfymy1wrbpbs7x1arcc55bqwapvvvjyz3mwxkbi56x"; depends=[dplyr igraph magrittr R6 stringr tibble]; }; critpath = derive2 { name="critpath"; version="0.1.4"; sha256="1jr5ra8gwzcfnap87z4snb5mmfqq2iaas2x54kqqcsb2gsk3gchs"; depends=[DiagrammeR ggplot2 reshape2]; }; crmPack = derive2 { name="crmPack"; version="1.0.0"; sha256="11zy1ci9d0zjbmc0gws9j9qrnfcqvky1ws9p41wjn0zifcckc5gi"; depends=[GenSA ggplot2 gridExtra MASS mvtnorm rjags]; }; @@ -7761,7 +7781,7 @@ in with self; { crn = derive2 { name="crn"; version="1.1"; sha256="1fw0cwx478bs6hxidisykz444jj5g136zld1i8cv859lf44fvx2d"; depends=[chron RCurl]; }; crochet = derive2 { name="crochet"; version="2.3.0"; sha256="0zvjaf6cv0nrjb4l4llkr0mmgha7ig31p4ri2rlnqyjlxi5l8hyq"; depends=[]; }; cromwellDashboard = derive2 { name="cromwellDashboard"; version="0.5.1"; sha256="0d57c1wdd1ds9fr7p256la63qbv8mirljgrvl1k8fp5gcnkps5wb"; depends=[dplyr DT httr shiny shinydashboard stringr]; }; - cronR = derive2 { name="cronR"; version="0.6.1"; sha256="06xs7fb2cw9ax7jrm4lwagyfbs34vrrilrr5rnb1jl1b2lmzpfii"; depends=[digest]; }; + cronR = derive2 { name="cronR"; version="0.6.2"; sha256="1w1100lapy3zi238nmh2vc7yadqvb8p3wz86k223bqgr6lia28ng"; depends=[digest]; }; crone = derive2 { name="crone"; version="0.1.1"; sha256="03qznxml940rl3kfxy4jkg9nsx9ss0gf2ck0ry000xglw6rm2s42"; depends=[]; }; cronologia = derive2 { name="cronologia"; version="0.2.0"; sha256="143wc9i9d99cybnjzg4dj7jn7sv3cc4bq3hh6mp50j9hwxnr1xhh"; depends=[glue htmltools]; }; crop = derive2 { name="crop"; version="0.0-2"; sha256="1yjpk7584wrz9hjqs21irjnrlnahjg8lajra9yfdp6r927iimg1l"; depends=[]; }; @@ -7775,6 +7795,7 @@ in with self; { crossmap = derive2 { name="crossmap"; version="0.3.0"; sha256="0dw1sg1by5805l72s5sbldznyp9qph9qrm4sizvqdx74bhb59s1y"; depends=[backports broom dplyr purrr rlang]; }; crossmatch = derive2 { name="crossmatch"; version="1.3-1"; sha256="082lrv2129mfhwlh99z3g8id3a29s8854skl152bl3ig8pk2gbjz"; depends=[nbpMatching survival]; }; crossrun = derive2 { name="crossrun"; version="0.1.0"; sha256="0br57nraqhs5f1cpidc8kd31izm82wvhiw9pxcdj9v51l9vifbmx"; depends=[Rmpfr]; }; + crosstable = derive2 { name="crosstable"; version="0.4.1"; sha256="1c3hzmm8s72qsppzh8z3ivf88hlx571jz1pymrzppdikxm9z013h"; depends=[checkmate dplyr flextable forcats glue lifecycle officer purrr rlang stringr tibble tidyr tidyselect]; }; crosstalk = derive2 { name="crosstalk"; version="1.2.0"; sha256="180y7mhpj17axpadwhh7s0qvrpdnag7g977vk256l96d6nmvlds2"; depends=[htmltools jsonlite lazyeval R6]; }; crossval = derive2 { name="crossval"; version="1.0.4"; sha256="0vshlyc6w4kfs03n56ylapiqgdyday7068wmfsphj4lhw322s4yp"; depends=[]; }; crossvalidationCP = derive2 { name="crossvalidationCP"; version="1.0-1"; sha256="0hxy9c83j8afgf4zg560x21yc4iyb1ykfv6mi1ak5qf5czhnnckf"; depends=[changepoint FDRSeg stepR wbs]; }; @@ -7788,7 +7809,7 @@ in with self; { crrp = derive2 { name="crrp"; version="1.0"; sha256="1fq54jr6avrli91a4z1hp5img4kghyw1yvjr5xyccsanf9i35x8r"; depends=[cmprsk Matrix survival]; }; crrstep = derive2 { name="crrstep"; version="2015-2.1"; sha256="03vd97prws9gxc7iv3jfzffvlrzhjh0g6kyvclrf87gdnwifyn1z"; depends=[cmprsk]; }; crs = derive2 { name="crs"; version="0.15-33"; sha256="0zzi3l35r4slq5iplgds4pkw4nf5594i5cwp4jrz5rbncw2vp19a"; depends=[boot np quantreg]; }; - crseEventStudy = derive2 { name="crseEventStudy"; version="1.2.1"; sha256="1nw96h23zyfybxzlwnkcn5rskjpbd3qgldizngxwgpaqkmkgm880"; depends=[sandwich]; }; + crseEventStudy = derive2 { name="crseEventStudy"; version="1.2.2"; sha256="0zqqd1d1k200kah03qvpfiyshs18s5h4j8y9mwr0fbhkfj7xags7"; depends=[sandwich]; }; crsmeta = derive2 { name="crsmeta"; version="0.3.0"; sha256="19v0bq80cma74jjl0k42pmlpd5jfv6b0hr7j2iq0d47h50pvrd02"; depends=[]; }; crsnls = derive2 { name="crsnls"; version="0.2"; sha256="0rv0xrdl9ix6bhaf554gma8zf923w47f8j1dkbs8g6xjqjr1c40a"; depends=[]; }; crso = derive2 { name="crso"; version="0.1.1"; sha256="1r10vz8z5y52a5v5phw22fhqwv9p7g66xfsx0906bcx74dn3f2b3"; depends=[foreach]; }; @@ -7801,9 +7822,9 @@ in with self; { cruts = derive2 { name="cruts"; version="1.1"; sha256="1ih6h9qk4yflzars00d61smjqj7s4bfvc2ikp6vlki9f6k012xcx"; depends=[lubridate ncdf4 raster sp stringr]; }; cry = derive2 { name="cry"; version="0.4.1"; sha256="14wicmlg8vzrqv4wf5xzf37l29ch3cbglbanmgbqdi8p49jpw1cf"; depends=[zoo]; }; crypto2 = derive2 { name="crypto2"; version="1.4.3"; sha256="0c4ih53s6k3wf7zksz4x1vp27685s1qlyxarcfgvs2176zhnd42h"; depends=[cli dplyr jsonlite lubridate plyr progress purrr tibble tidyr]; }; + cryptoverse = derive2 { name="cryptoverse"; version="0.1.0"; sha256="169afkvinngwhrxi50a4r07lhgb6x9dxjbi3bj0gc7iyxa8cl9c5"; depends=[]; }; cryptowatchR = derive2 { name="cryptowatchR"; version="0.2.0"; sha256="0lf94l5klkx1j1fgaq2qjqr2y8ckm5raa3a508x72ph45v10pfyq"; depends=[httr jsonlite lubridate]; }; cryst = derive2 { name="cryst"; version="0.1.0"; sha256="04da19dy3mkngd3ma44cd8cdkb5acjy9lbhfipa9flp339j1pp57"; depends=[flux pracma]; }; - csSAM = derive2 { name="csSAM"; version="1.2.4"; sha256="1ms8w4v5m9cxs9amqyljc2hr1178cz6pbhmv7iiq9yj1ijnl4r1x"; depends=[]; }; csa = derive2 { name="csa"; version="0.7.0"; sha256="0cmabcvfxfplnzx7mdsfas3jhgz44y86411amaphm75zmv8khcif"; depends=[data_table doParallel foreach ggplot2 ggpubr Lmoments moments raster reshape2 scales]; }; csabounds = derive2 { name="csabounds"; version="1.0.0"; sha256="15l7i15w5jk4h3148dlk8v2i4awns5vxvv6m59qcv0hzns6jhx9j"; depends=[BMisc ggplot2 pbapply progress qte]; }; csampling = derive2 { name="csampling"; version="1.2-2.1"; sha256="0kqx7j96yafsqi9cz551fqpwkbcabxl8zpwa2jms862z41xbgsv3"; depends=[marg statmod survival]; }; @@ -7813,7 +7834,7 @@ in with self; { csodata = derive2 { name="csodata"; version="1.2.2"; sha256="1xm51vz45kbn6gckd96qbbafvzm10nllfrv01s9538nwbz1whb03"; depends=[dplyr httr jsonlite lubridate R_cache reshape2 rjstat sf]; }; cspec = derive2 { name="cspec"; version="0.1.2"; sha256="049vynbffxyd5zwxwyz1jv05zgq7zrx1ypzv5j62ph64gl42m13p"; depends=[]; }; cspp = derive2 { name="cspp"; version="0.3.2"; sha256="13iy6kz1v0dbrry18lkjmmgd6bsazbjbaa0bdabpg0hyw241j8b4"; depends=[csppData dplyr ggcorrplot ggplot2 haven mapproj purrr readr rlang stringr tidyselect]; }; - csppData = derive2 { name="csppData"; version="0.1.4"; sha256="1wwj2fscwyrn5ghgr6i422mnbkn9hyqb1h8wwmqn82rxgcm12w9s"; depends=[]; }; + csppData = derive2 { name="csppData"; version="0.2.51"; sha256="17w0wl6nc37ncdz481i3nm7nwsh6aim6lnaa5i6ralaa1pdyq2bd"; depends=[]; }; csrplus = derive2 { name="csrplus"; version="1.03-0"; sha256="0kljndmiwblsvvdnxfywida9k0dmdwjq63d934l5yl6z7k4zd0xa"; depends=[sp]; }; cssTools = derive2 { name="cssTools"; version="1.0"; sha256="1p8c21c1hilmd9ibqyz493fy1x95hb2pidybsyicch53gkb542br"; depends=[sna]; }; cstab = derive2 { name="cstab"; version="0.2-2"; sha256="1lr401fvi88f4jv8jh4brx95ymncfw8clripz1r6a46inj80nj4j"; depends=[cluster fastcluster Rcpp]; }; @@ -7824,12 +7845,13 @@ in with self; { csvwr = derive2 { name="csvwr"; version="0.1.6"; sha256="1wwj0zx4jawfl5264qxa90qwll971c24hyk645r0c7wwvwa8dd9r"; depends=[jsonlite magrittr purrr readr rlang stringr]; }; csvy = derive2 { name="csvy"; version="0.3.0"; sha256="0id015szw1c63vd1h0515jsqdhyn32sxpxm89f3sb1qkgq3yynmy"; depends=[data_table jsonlite yaml]; }; cta = derive2 { name="cta"; version="1.3.0"; sha256="1i8psw6p6f4633ad17apm6v5ikrpv1dagm0s8pggpsjbbw8d655v"; depends=[intervals limSolve numDeriv]; }; + ctbi = derive2 { name="ctbi"; version="1.0.1"; sha256="1p6qv4187qjnz36gs328bm337f72jybyf3x490qn18pxjwkczj4x"; depends=[data_table]; }; ctf = derive2 { name="ctf"; version="0.1.0"; sha256="1vwqfh1y2if79rkpy6b0ay50fyis7h5rlpvhgikahnmcr2q5l14m"; depends=[iotools jsonlite]; }; ctgdist = derive2 { name="ctgdist"; version="0.1.0"; sha256="1m3ryppfvd984n5xfphjqhi9i1sigl17v897mqaichj21dzaq62f"; depends=[mirt]; }; ctgt = derive2 { name="ctgt"; version="2.0"; sha256="0g2ibk9pxay0idj55q0yh4vbdb6l6460r997fnapimn7fgyz6f66"; depends=[BH Rcpp]; }; cthist = derive2 { name="cthist"; version="0.1.3"; sha256="03ns8ckacnz3k5dmyzkhg61wrp7syg1igmp96y4nwkl0z9lz3294"; depends=[dplyr httr jsonlite magrittr readr rlang rvest selectr stringr tibble]; }; cthreshER = derive2 { name="cthreshER"; version="1.1.0"; sha256="18b66d08dq8pvnixmm4ir4r800b37z5yillaa88l317mdilbci9s"; depends=[Matrix]; }; - ctl = derive2 { name="ctl"; version="1.0.0-4"; sha256="027cij4vdsq3xhi38izzn07q6xwja7n8v95l7kk1pp92y9qkvqv3"; depends=[MASS qtl]; }; + ctl = derive2 { name="ctl"; version="1.0.0-7"; sha256="1a01rha6sgv8zmcfjb1c438s9d9bjzdjf2pmyml1m5jmz93q70ds"; depends=[MASS qtl]; }; ctmcd = derive2 { name="ctmcd"; version="1.4.1"; sha256="01nflgdyb70kh4f8bnxpavr31fz4fh02kgz2nlx3zzblnm2idbcx"; depends=[coda expm numDeriv Rcpp RcppArmadillo]; }; ctmcmove = derive2 { name="ctmcmove"; version="1.2.9"; sha256="1pxyxbbhfa8arqfb7qw10ya1b8hy9ylqbqqzys6d9dsixvdk98h0"; depends=[fda gdistance Matrix raster sp]; }; ctmle = derive2 { name="ctmle"; version="0.1.2"; sha256="0qc1ji8fjpr88dn6mrpijfcx1ij4zkrxsbcw405hxal7rli0gyp3"; depends=[glmnet SuperLearner tmle]; }; @@ -7839,9 +7861,9 @@ in with self; { ctrdata = derive2 { name="ctrdata"; version="1.8.0"; sha256="15jaxwqhx8fwzsnjgqqxkc6ngd1pqcgn1ffyl1hpwr92p9j7vkf9"; depends=[clipr curl httr jsonlite nodbi rvest stringi xml2]; }; ctrialsgov = derive2 { name="ctrialsgov"; version="0.2.5"; sha256="0hdh1fdfaja8amf7fkvk1c6yif703132bvacq0j9pk5jr97czgpw"; depends=[DBI dplyr ggplot2 htmlwidgets lubridate Matrix plotly purrr rlang stringi tibble]; }; ctrlGene = derive2 { name="ctrlGene"; version="1.0.1"; sha256="0x7j11v7jj4k1jml6lrnjq79awhrvsm3pig1yxsd337jlfml3ra9"; depends=[psych]; }; - ctsem = derive2 { name="ctsem"; version="3.5.4"; sha256="1gzv3i43nknd2fkjhrgwq8kf5z5vl52k5715sjzad9bmdjqf9wdl"; depends=[BH cOde data_table Deriv expm ggplot2 MASS Matrix mize mvtnorm pkgbuild plyr Rcpp RcppEigen RcppParallel rstan StanHeaders tibble]; }; + ctsem = derive2 { name="ctsem"; version="3.5.5"; sha256="1pgyq5s22gxsx2g42li1rcgf68llc8qv7f2y1abz57rm9maq07yz"; depends=[BH cOde data_table Deriv expm ggplot2 MASS Matrix mize mvtnorm pkgbuild plyr Rcpp RcppEigen RcppParallel rstan StanHeaders tibble]; }; ctsemOMX = derive2 { name="ctsemOMX"; version="1.0.4"; sha256="1sjsm573alsg3dvj58rwknqapcydx77zbs0b8hcf59qbbhfa3djv"; depends=[ctsem Matrix OpenMx plyr]; }; - ctv = derive2 { name="ctv"; version="0.9-1"; sha256="0lq657n7km070l3h6k036qm5l65bqab4z7d6bvrdffcfa3abi6rn"; depends=[]; }; + ctv = derive2 { name="ctv"; version="0.9-2"; sha256="1fzmsfmcvyhfrqi802s87fxc0x76p7n7azrnybl03kw14vv4k62p"; depends=[]; }; cuRe = derive2 { name="cuRe"; version="1.0.1"; sha256="0vw2iv9inz8md7lz6f1p456wxjc07kap1mvqf58hixqxbrb23dgi"; depends=[date numDeriv relsurv rstpm2 statmod survival]; }; cubature = derive2 { name="cubature"; version="2.0.4.2"; sha256="0kk9lw3s66h0sayza3in8rdj7bmgqn4v5lfckhslarpvj2fxsnv0"; depends=[Rcpp]; }; cubelyr = derive2 { name="cubelyr"; version="1.0.1"; sha256="1g3pvam1fkqh63snibqcfaazvj7lrkfip8w9pjvwdclj0l8382kl"; depends=[dplyr glue pillar purrr rlang tibble tidyselect]; }; @@ -7893,7 +7915,7 @@ in with self; { cwbtools = derive2 { name="cwbtools"; version="0.3.4"; sha256="1wj42n6phniwh6ms5xfmfazd8a0lkaf46wzv916i9xzsaf6hzqr7"; depends=[cli curl data_table fs httr jsonlite lifecycle pbapply R6 RcppCWB rstudioapi stringi xml2 zen4R]; }; cwhmisc = derive2 { name="cwhmisc"; version="6.6"; sha256="1pf365g4f51cfrhlff9mqw2ddvkps0abax17zcn3vw1ba2djalnp"; depends=[lattice]; }; cwm = derive2 { name="cwm"; version="0.0.3"; sha256="1ln2l12whjhc2gx38hkf3xx26w5vz7m377kv67irh6rrywqqsyxn"; depends=[MASS matlab permute]; }; - cxhull = derive2 { name="cxhull"; version="0.3.0"; sha256="1s6w6ni90lp75rw8hvcqbavy84vzzll1pc4gnvnbhw4kl4q55jbq"; depends=[rgl]; }; + cxhull = derive2 { name="cxhull"; version="0.4.0"; sha256="0hgx4y1svx9dcwjx254hmawyswsv17wn7kg2wwg8hyal9qgmh0wa"; depends=[Morpho rgl Rvcg]; }; cxr = derive2 { name="cxr"; version="1.0.0"; sha256="12rx7hna3h84a2xb2ir43xgb3zfmh0fhn5wcdjklk2g94dmwid28"; depends=[mvtnorm optimx]; }; cxxfunplus = derive2 { name="cxxfunplus"; version="1.0"; sha256="0kyy5shgkn7wikjdqrxlbpfl3zkkv4v1p8a1vv0xkncwarjs4n8d"; depends=[inline]; }; cycleRtools = derive2 { name="cycleRtools"; version="1.1.1"; sha256="1l7w2lm4s149ndd85v41pkdrdig6l3nmhl14bdx56aw8q57fxmb0"; depends=[Rcpp xml2]; }; @@ -7912,7 +7934,7 @@ in with self; { cytometree = derive2 { name="cytometree"; version="2.0.2"; sha256="18g7av73lmnyga1kk24bf8jy599zn9n6qhr13mxsqgi0zdinicfa"; depends=[cowplot ggplot2 GoFKernel igraph mclust Rcpp RcppArmadillo]; }; cytominer = derive2 { name="cytominer"; version="0.2.2"; sha256="1n9yimjhdziv1vzjyni6ssi38nxcnfr5jpmzgxcn6vysffh5s9pz"; depends=[caret doParallel dplyr foreach futile_logger magrittr Matrix purrr rlang tibble tidyr]; }; czechrates = derive2 { name="czechrates"; version="0.2.2"; sha256="162r9inbjkgfm3y73jb3d9pxmgid94jjy5kxjp7058jsiv2ibn05"; depends=[curl dplyr httr magrittr readr tibble tidyr]; }; - czso = derive2 { name="czso"; version="0.3.7"; sha256="1gq5arnysd81i9psljzamkgxkjwxmlmqv074bhpi7xv6ij6j1886"; depends=[curl dplyr httr jsonlite lifecycle magrittr readr rlang stringr tibble usethis]; }; + czso = derive2 { name="czso"; version="0.3.9"; sha256="1smvjgf0vjykx4nknmrlbq5iv0j84idl4yhhwcwg2rylsbbh7hi8"; depends=[cli curl dplyr httr jsonlite lifecycle magrittr readr rlang stringi tibble]; }; d3Network = derive2 { name="d3Network"; version="0.5.2.1"; sha256="1gh979z9wksyxxxdzlfzibn0ysvf6h1ij7vwpd55fvbwr308syaw"; depends=[plyr rjson whisker]; }; d3Tree = derive2 { name="d3Tree"; version="0.2.2"; sha256="142bc6gdmhzaikdfyxb1pq9nlybgkrgi2kjgk40w4wbxzx5mwkbh"; depends=[dplyr htmlwidgets magrittr plyr stringr]; }; d3plus = derive2 { name="d3plus"; version="0.1.0"; sha256="0kadz83pals03n0v3zqhmhf6visigk52yn58xckhb57fid4xzj5w"; depends=[htmlwidgets magrittr]; }; @@ -7925,7 +7947,7 @@ in with self; { dCovTS = derive2 { name="dCovTS"; version="1.2"; sha256="0gzilpz2hwibvwjpndi2nw61knhi4v0bhz5z4idffszgc9mjw1wm"; depends=[dcov doParallel foreach Rfast Rfast2]; }; dGAselID = derive2 { name="dGAselID"; version="1.2"; sha256="0da7fi872i3ycb3j5v4isr4x2z39a68w4mdq859zslmqhiqd43b6"; depends=[ALL Biobase genefilter MLInterfaces]; }; dHSIC = derive2 { name="dHSIC"; version="2.1"; sha256="1c1xz1f1fp937w4rlylvqv3ii0p9dafvmn4fqq8rzxhcg5rn9j4l"; depends=[Rcpp]; }; - dLagM = derive2 { name="dLagM"; version="1.1.6.2"; sha256="0hh9nyk5x0yzy2l8gnjn0zkq3xx26pdlvk8myl7ma4y0qyk77587"; depends=[AER dynlm formula_tools lmtest MASS nardl plyr roll sandwich strucchange wavethresh]; }; + dLagM = derive2 { name="dLagM"; version="1.1.7"; sha256="1i5fwzdscp7wpzbsdvwvak26p0aj0xviisp0aglaa7nrwixx8y0w"; depends=[AER dynlm formula_tools lmtest MASS nardl plyr roll sandwich strucchange wavethresh]; }; dMod = derive2 { name="dMod"; version="1.0.2"; sha256="1fnv3f5xlng8f3df5hvxncfnnadzwcsdiklrb2g67llf3m06bq74"; depends=[cOde deSolve doParallel dplyr foreach ggplot2 plyr rootSolve stringr]; }; dPCP = derive2 { name="dPCP"; version="1.0.4"; sha256="1wxni1m9iaak0isc1sl205dnx3v8pzqyj22aj7alzwim6d6a4hjq"; depends=[dbscan e1071 exactci ggplot2 ggpubr raster rlist scales shiny shinyjs stringr]; }; dSVA = derive2 { name="dSVA"; version="1.0"; sha256="0vy0flyg82x0n9vw6jf9f76qy84sp0wnis91faj37ac5hdv3pvsb"; depends=[sva]; }; @@ -7936,6 +7958,7 @@ in with self; { dad = derive2 { name="dad"; version="4.0.0"; sha256="154afqf3xwbdjp9qr3rlz06ln2cnwzafk3p9h73k0h2g5n8yp5b9"; depends=[DescTools e1071 ggplot2]; }; dadjoke = derive2 { name="dadjoke"; version="1.0"; sha256="118pacwc2qb3c5zbhr71zf4zj1ab2g4rs5h6bvrscjyd7a71jc3f"; depends=[]; }; dadjokeapi = derive2 { name="dadjokeapi"; version="1.0.2"; sha256="143xs3nkf6ynr83z5gggz318nvpnsbfmskl1ipavlzrqk785dlac"; depends=[beepr curl dplyr httr png]; }; + dados = derive2 { name="dados"; version="0.1.0"; sha256="1jdna8s10qz50zrsrm36y1jx489sznd86akx2lwdmriiiz3abn65"; depends=[AmesHousing babynames dplyr forcats fueleconomy gapminder ggplot2 Lahman nasaweather nycflights13 palmerpenguins pixarfilms rlang tibble tidyr yaml]; }; dae = derive2 { name="dae"; version="3.2-13"; sha256="0mq94ah21p1glvsbvdmi2p7nlgz1bvq7w3rz2z3mdqq18kz6nkjw"; depends=[ggplot2 plyr]; }; daewr = derive2 { name="daewr"; version="1.2-7"; sha256="138hmmrm3zcdb2rcilvrasndvsq38agp9bpikd3xbb7j4z1nrsl7"; depends=[FrF2 lattice stringi]; }; daff = derive2 { name="daff"; version="0.3.5"; sha256="00zcdf215m7p3xm9yv571v09znhdqacxg69hb5b5j749mp4wdsyj"; depends=[jsonlite V8]; }; @@ -7953,13 +7976,12 @@ in with self; { dams = derive2 { name="dams"; version="0.3.0"; sha256="1jlx1b4cir1vwq75jnmk0pc6j95syfpi0hlnkx82g7pwfxwrdrib"; depends=[crul fauxpas janitor readxl]; }; dang = derive2 { name="dang"; version="0.0.15"; sha256="0zy72rlviisjb3syvj2fq9zliwk02m33kjd7h9q7n3xq3876bi4w"; depends=[tidyCpp]; }; dani = derive2 { name="dani"; version="0.1-1"; sha256="0ff0hcb5r8k6m6kv1zhjrpvl7gr1al3q0zlk4yjj89qd2j5byqp8"; depends=[Epi]; }; - dann = derive2 { name="dann"; version="0.2.2"; sha256="115mc2mrmriyp24i8xgr58bjfgz6rzccl7s4akzp8rq5vhca707y"; depends=[fpc ggplot2 MASS purrr Rcpp RcppArmadillo rlang stringr tibble]; }; + dann = derive2 { name="dann"; version="0.2.6"; sha256="1kmhif5vpj221pmpv5l3a8dspcgqg4ygbvi4s51yyi9pxnlf3mvw"; depends=[fpc ggplot2 MASS purrr Rcpp RcppArmadillo rlang stringr tibble]; }; danstat = derive2 { name="danstat"; version="0.2.0"; sha256="16b0dl41g56s6iyxndpl403wgqqj1l3g9k78y3ciq5djq3a25m97"; depends=[httr jsonlite readr]; }; dapr = derive2 { name="dapr"; version="0.0.3"; sha256="136chxijyxrl5sbiggxf56zga26zqds647z1z2igwn5mdff1wxyb"; depends=[]; }; daqapo = derive2 { name="daqapo"; version="0.3.1"; sha256="09fmnpp4nl6n1z834dxzs2v56ba9sfb4mrmc1nrrixxhfsxshmb7"; depends=[bupaR dplyr edeaR glue lubridate magrittr miniUI purrr readr rlang shiny stringdist stringr tidyr xesreadR]; }; darksky = derive2 { name="darksky"; version="1.3.0"; sha256="1740cw5qifgvqa0nafd6lmllxi32n1zm45zlify1yn3h1qdcszhb"; depends=[ggplot2 gridExtra gtable httr plyr]; }; dartR = derive2 { name="dartR"; version="1.9.9.1"; sha256="1i2ha796k5xhyzz8q26pygc9hy2ay2b357h50ljfs2rf4np6l0sz"; depends=[adegenet ape crayon devtools dplyr foreach ggplot2 gridExtra HardyWeinberg hierfstat MASS plyr PopGenReport robustbase SNPRelate sp StAMPP stringr tidyr vegan]; }; - darts = derive2 { name="darts"; version="1.0"; sha256="07i5349s335jaags352mdx8chf47ay41q7b0mh2xjwn2h9kzgqib"; depends=[]; }; dash = derive2 { name="dash"; version="0.9.3"; sha256="1wsvhnvh7sxi4gr88k6kycdr6is8akz9qjy70pl3whykyvx4cjq0"; depends=[assertthat base64enc brotli crayon digest fiery glue htmltools jsonlite magrittr mime plotly R6 reqres rlang routr]; }; dashCoreComponents = derive2 { name="dashCoreComponents"; version="1.10.0"; sha256="11jrlls6k6qlvi81741ga908aw22m05fhhr9jpzli982s611jrwl"; depends=[]; }; dashHtmlComponents = derive2 { name="dashHtmlComponents"; version="1.0.3"; sha256="01zrwjlhwwajk2lnv7is1r6nril83l65pynx856y9mvnm05xkb7m"; depends=[]; }; @@ -7977,7 +7999,7 @@ in with self; { dataMeta = derive2 { name="dataMeta"; version="0.1.1"; sha256="13xxayqxbps07h0xr5b7sb7q30gy5zm7jzzaq4k20fskkjrzhzcm"; depends=[dplyr]; }; dataPreparation = derive2 { name="dataPreparation"; version="1.0.4"; sha256="05vjngp9d2fzfb15z6zfkdhcsw3nsf12pskbidzs25v8xh6avlg7"; depends=[data_table lubridate Matrix progress stringr]; }; dataReporter = derive2 { name="dataReporter"; version="1.0.2"; sha256="1rjm6j1s229j1j9yb5y1sdi03x22qzrkmhc09k4xdmwmwmpi3s58"; depends=[ggplot2 gridExtra haven htmltools magrittr pander rmarkdown robustbase stringi whoami]; }; - dataRetrieval = derive2 { name="dataRetrieval"; version="2.7.10"; sha256="0lmd2j9inc29s2xk09gk7rbypgcqzpb2vmnnbmbg1liw96jsz5wl"; depends=[curl httr jsonlite lubridate readr xml2]; }; + dataRetrieval = derive2 { name="dataRetrieval"; version="2.7.11"; sha256="0dhayggsnxjqr4wpplydayya3cns78iikmzsn3dclvyr3aw8352r"; depends=[curl httr jsonlite lubridate readr xml2]; }; datacleanr = derive2 { name="datacleanr"; version="1.0.3"; sha256="0mrfqm3lgb6sl2j35sfd00gb5121j9wmlff8k0vczr3sgmqz4dg8"; depends=[bslib clipr dplyr DT formatR fs glue htmltools htmlwidgets lubridate magrittr plotly purrr RColorBrewer rlang rstudioapi shiny shinyFiles shinyWidgets summarytools]; }; datadigest = derive2 { name="datadigest"; version="1.0.2"; sha256="1v4nwflrgjhwkrdlrjnqyq1spv1jkgxn1kmapml0zrvnvwf0r1a1"; depends=[haven Hmisc htmltools htmlwidgets jsonlite miniUI shiny tibble]; }; datadogr = derive2 { name="datadogr"; version="0.1.2"; sha256="10zbxb9gkymw78ras9y4wrifz7cxh3y630yzjcf9ds2p557vcjzp"; depends=[anytime dplyr glue httr lubridate purrr stringr tibble tidyr]; }; @@ -7985,14 +8007,12 @@ in with self; { dataframes2xls = derive2 { name="dataframes2xls"; version="0.4.7"; sha256="10krlv0l5w021z0qd7rj93pzfjjmcjlda4xz4vq470bxbjmn1bss"; depends=[]; }; datafsm = derive2 { name="datafsm"; version="0.2.4"; sha256="0klhkbwpaqxk2mnxha8b03mpgfxk107ff9d2nx6cky59il3c1825"; depends=[caret GA Rcpp]; }; datagovindia = derive2 { name="datagovindia"; version="1.0.5"; sha256="1k04k2bz56d3k1nbx8p8pc1x3cxrdmnpgbrgmxl5i1qg3yashj91"; depends=[curl dplyr httr magrittr plyr rlang stringr]; }; - datamap = derive2 { name="datamap"; version="0.1-1"; sha256="0qm4zb9ldg4wz1a7paj5ilr1dhyagq81rk9l2v43hmkv52sssgkv"; depends=[DBI]; }; datamart = derive2 { name="datamart"; version="0.5.2"; sha256="0c0l157fzkcp30ch4ymaalcx18zhz6sa5srr50w9izhbx3pmldxp"; depends=[base64 gsubfn markdown RCurl RJSONIO XML]; }; datamods = derive2 { name="datamods"; version="1.2.0"; sha256="1k5nbpy40jzk6jhgigq74qxvb0ni44p3iwb342950qbnb8aniwxw"; depends=[data_table DT htmltools phosphoricons readxl rio rlang shiny shinyWidgets tibble]; }; datanugget = derive2 { name="datanugget"; version="1.0.0"; sha256="1ki4kgz6y9a313f07jml39pdxhadgs287rkpnlwvcw6kgj5qxala"; depends=[doSNOW foreach]; }; dataonderivatives = derive2 { name="dataonderivatives"; version="0.4.0"; sha256="0bp1ynarz70c2clsz60dqfd4vmgm3251jv6821db5n7fffdrr7qa"; depends=[httr2 readr tibble vetr]; }; dataone = derive2 { name="dataone"; version="2.2.1"; sha256="1gnzyjiwppx5mjwf38nm146vvmy6vlpqy9ibd2rc5f744pdvifxb"; depends=[base64enc datapack hash httr jsonlite parsedate plyr stringi stringr uuid XML]; }; datapack = derive2 { name="datapack"; version="1.4.0"; sha256="1n69ycca7f7igl9n6spdhn2s431vrljmd0v80q3s5jnyb4mf4xyd"; depends=[digest hash redland uuid XML]; }; - datapackage_r = derive2 { name="datapackage.r"; version="1.3.5"; sha256="01xx8alj3niznkrn3y2w9j1g60zn1fq0a2clf4r5p2pjyr2rqgy3"; depends=[config future httr iterators jsonlite jsonvalidate purrr R_utils R6 readr rlist stringr tableschema_r urltools V8]; }; datapasta = derive2 { name="datapasta"; version="3.1.0"; sha256="0sqv29iv2rv50rbw1601rn8p7gv7rsw00djhl7h1znr0igzi5b82"; depends=[clipr readr rstudioapi]; }; dataprep = derive2 { name="dataprep"; version="0.1.5"; sha256="1v48ry6xk0qg73j6js6m6fqd1bdhjv500bndb60zzl2qifrjfk2a"; depends=[data_table doParallel dplyr foreach ggplot2 reshape2 scales zoo]; }; dataquieR = derive2 { name="dataquieR"; version="1.0.9"; sha256="0wc7vjjjffvmg9ahbqnygfrsk97n7k4y1y0ichvpr2nc8pfi7772"; depends=[dplyr emmeans ggplot2 ggpubr lme4 lubridate MASS MultinomialCI parallelMap patchwork R_devices reshape rlang robustbase]; }; @@ -8009,16 +8029,16 @@ in with self; { datastepr = derive2 { name="datastepr"; version="0.0.2"; sha256="039yggdj8jdici7hwmkjwgix45lvwjl7rw5h2rfzsm9xaq6vw1z2"; depends=[dplyr lazyeval magrittr R6 tibble]; }; datastructures = derive2 { name="datastructures"; version="0.2.9"; sha256="0prw24iy1af02g1nzw588dv085bdnl6pzvizpxspmwzj6vrfbaav"; depends=[BH purrr Rcpp]; }; dataverse = derive2 { name="dataverse"; version="0.3.10"; sha256="0fhxzd83hl2qgif8d5caw893i5w2b951yl7a5dmbj69ihcn0xfrg"; depends=[checkmate httr jsonlite readr xml2]; }; - datawizard = derive2 { name="datawizard"; version="0.2.3"; sha256="0hcnwz42zy9hp32brga31jwk34bz063myqjp2wfxsqm4sqrkv2rx"; depends=[insight]; }; + datawizard = derive2 { name="datawizard"; version="0.3.0"; sha256="1jmrkfymh66d0n4256hamvrbqipfl3bl05q618z4flmq2byifibs"; depends=[insight]; }; date = derive2 { name="date"; version="1.2-39"; sha256="0mwp1619rxqyyyyxk224fh0x6g4rgyvr97q0kj076cxp71b97cdm"; depends=[]; }; - datefixR = derive2 { name="datefixR"; version="0.1.3"; sha256="0vphkw0db0wvcq10kclz5xw5kfckmj6nqp2p3l8l82p5aqgp0ij8"; depends=[stringr]; }; + datefixR = derive2 { name="datefixR"; version="0.1.4"; sha256="185lv1dap6xkmyqkv4fjmlmf6w95gm6szi0pps0pfrmcj42ng1fa"; depends=[stringr]; }; datelife = derive2 { name="datelife"; version="0.6.1"; sha256="0fv478ykka6m5j3d6k7265xp76qc78fr7ms9khx349qbylj67306"; depends=[abind ape BiocManager bold cluster compare geiger httr ips knitcitations paleotree phangorn phylobase phylocomr phytools plyr rotl stringr taxize treebase]; }; daterangepicker = derive2 { name="daterangepicker"; version="0.1.0"; sha256="1605ch84ad3nmmad0yy3id0izv0nz536lxwib6rkdkjik5761gqk"; depends=[htmltools jsonify shiny]; }; datetime = derive2 { name="datetime"; version="0.1.4"; sha256="0nn1yxknsn3crmwbkws5kvfjhd65dw0fkfbg67gba0dyaqp1jg37"; depends=[]; }; datetimeutils = derive2 { name="datetimeutils"; version="0.5-0"; sha256="030md2pydhgx8x8chga7byl8x41m2dbw94b4ds7md2nqkdrq7hqz"; depends=[]; }; dateutils = derive2 { name="dateutils"; version="0.1.5"; sha256="03xch5wcvv15fy9x70smrki6374lddhf0sfp0inymdsq4g8wp4bc"; depends=[data_table Rcpp RcppArmadillo seasonal]; }; datoramar = derive2 { name="datoramar"; version="0.1.0"; sha256="0zq6vhq6dmsyagmqrmb85z6fy9qhwra3s3iasr3jgc4ryr009pml"; depends=[httr jsonlite tibble]; }; - datos = derive2 { name="datos"; version="0.3.0"; sha256="0q0qjk9iahxzz4gycmiq4nb34kiqxb9bxbh55slp31bvx32zcz6n"; depends=[babynames dplyr forcats fueleconomy gapminder ggplot2 Lahman nasaweather nycflights13 rlang tibble tidyr yaml]; }; + datos = derive2 { name="datos"; version="0.4.0"; sha256="0clr3g8iaypazlb8gmx8mnydg34bn8wv9q7x6z01jp58z5hp5fyc"; depends=[babynames dplyr forcats fueleconomy gapminder ggplot2 Lahman nasaweather nycflights13 palmerpenguins rlang tibble tidyr yaml]; }; datplot = derive2 { name="datplot"; version="1.0.0"; sha256="1y9pls1g2flz8n3jbh4jcp1fn78qwfbgsrzyf3jms9f6w8fs0f1d"; depends=[]; }; datr = derive2 { name="datr"; version="0.1.0"; sha256="0sqwhn6zdaq8i45ry207mpbda1djjaxp9mcn13hi5wkry6z0bmlr"; depends=[devtools]; }; datrProfile = derive2 { name="datrProfile"; version="0.1.0"; sha256="1bhyk3xjgwf92i765z3bkdnzkxg8fshriz9r6m371q1c75xysfil"; depends=[dplyr odbc RSQLite]; }; @@ -8032,7 +8052,7 @@ in with self; { dbMC = derive2 { name="dbMC"; version="1.0.0"; sha256="0gcgn3m10sx0naim206jkw7szl0mr7vbnkn25avvv9f8iy3y9vcv"; depends=[softImpute]; }; dbWebForms = derive2 { name="dbWebForms"; version="0.1.0"; sha256="0diz5mh4fhwrwqa7jr70vzj2jks7h2n91v2hr1mvvlbc7rzd9yki"; depends=[data_table DBI html5 stringi]; }; dbarts = derive2 { name="dbarts"; version="0.9-20"; sha256="0ap9lmkx2z4fgc5b9kws6pgvshkr9ngr1z1qgmivf698h6ayfx8x"; depends=[]; }; - dbcsp = derive2 { name="dbcsp"; version="0.0.1.0"; sha256="08y111ivy5f8jgmlsmf52vxxc64j2z4lijvdx1bx6a90vcvlqc51"; depends=[caret geigen ggplot2 MASS Matrix parallelDist plyr TSdist]; }; + dbcsp = derive2 { name="dbcsp"; version="0.0.2.0"; sha256="1g4f4l20g9ljm53hvq9caz87fsch6ikqqdmaf856bmc2bh6dckca"; depends=[caret geigen ggplot2 MASS Matrix parallelDist plyr TSdist zoo]; }; dbd = derive2 { name="dbd"; version="0.0-22"; sha256="13qdm0y5dvc107xnv6663gbvmkw77150r073lp1jppf3gs8s587b"; depends=[]; }; dbflobr = derive2 { name="dbflobr"; version="0.2.1"; sha256="0q736fpz18kq18jr8ga1jxh3vggmd7xws0sda83h95gkfx96pf8p"; depends=[blob chk clisymbols crayon DBI flobr glue rlang RSQLite]; }; dbglm = derive2 { name="dbglm"; version="1.0.0"; sha256="1ljfi31n8d1mh1lr4q00klp74fz0c0jy9wdy2svhlzaszbrg76ky"; depends=[DBI dbplyr dplyr knitr purrr rlang stringr tibble tidypredict tidyr tidyverse vctrs]; }; @@ -8051,6 +8071,7 @@ in with self; { dc3net = derive2 { name="dc3net"; version="1.2.0"; sha256="19ibsvbnq6y88vqvgkm31zrqwjhpml59d792bz0zkk50r1q5bnyr"; depends=[c3net igraph RedeR]; }; dcGOR = derive2 { name="dcGOR"; version="1.0.6"; sha256="0rvwa25r23yayx1i6xhkfaw2z85d2iyfx3slg3aq1m0fa7kj380p"; depends=[dnet igraph Matrix]; }; dccmidas = derive2 { name="dccmidas"; version="0.1.0"; sha256="0ng46i9rv4aw26af03ryhmcrb8xhhd8d72zbqiwrzhhkh18azbgx"; depends=[lubridate maxLik Rcpp RcppArmadillo Rdpack roll rugarch rumidas tseries xts zoo]; }; + dccpp = derive2 { name="dccpp"; version="0.0.2"; sha256="06mykc25398bpp7dk903ykb3q5jx8m3nl7hxzsl7m2sa7iaikpnx"; depends=[Rcpp RcppArmadillo]; }; dccvalidator = derive2 { name="dccvalidator"; version="0.3.0"; sha256="1l74pqvac0n7dyfzkz2m0m6j19c8icymbwcifp2g5qvrpznfhxjb"; depends=[config ggplot2 glue golem htmltools knitr markdown purrr reactable readr readxl reticulate rlang shiny shinyBS shinydashboard shinyjs skimr tibble visdat]; }; dclone = derive2 { name="dclone"; version="2.3-0"; sha256="0w1bhzsnmnhsrrw5ffm89pj2wy2fmx14y7g6b1mb2wlwbczjzzsh"; depends=[coda Matrix rjags rstan]; }; dclust = derive2 { name="dclust"; version="0.1.0"; sha256="1icfx52v3g7kkkc11pw0xlrc8dlx5q3n2zbrd3fccmw17jzxqbg7"; depends=[openssl phylogram]; }; @@ -8061,7 +8082,6 @@ in with self; { dcov = derive2 { name="dcov"; version="0.1.1"; sha256="0c3a5dzpizsxlsh723pcd0d7n0mgfc9y35vrfhmskp3c1x639mh3"; depends=[Rcpp RcppArmadillo]; }; dcurver = derive2 { name="dcurver"; version="0.9.2"; sha256="1v4h480lff1cyjjwb80dksiffh0y4b3s07lq2l2r21rn1l4mav6c"; depends=[Rcpp RcppArmadillo]; }; dcurves = derive2 { name="dcurves"; version="0.2.0"; sha256="0vm1cg6sr152fg5bgy2inf4x42vkbvw9ahy5b1dda8jgc6s7zr9v"; depends=[broom dplyr ggplot2 glue purrr rlang scales survival tibble]; }; - dcv = derive2 { name="dcv"; version="0.1.1"; sha256="12c716x8dnxnqksibpmyysqp2axggvy9dpd55s9bhnsvqvi6dshj"; depends=[lmtest]; }; ddalpha = derive2 { name="ddalpha"; version="1.3.11"; sha256="1sdnb47r534nh138zk3a6b2mgi74nvshc7p5m304vjs9jlx4l2y3"; depends=[BH class geometry MASS Rcpp robustbase sfsmisc]; }; dde = derive2 { name="dde"; version="1.0.1"; sha256="0qgnxb27a2wnrbfk5v22i985mqhjp4hp05vl1ccsapbxkpf0gqcv"; depends=[ring]; }; ddi = derive2 { name="ddi"; version="0.1.0"; sha256="0pnkylz7l6brx6i73wys637w811psxhnr39lcmkag41s6jcgabd5"; depends=[]; }; @@ -8084,9 +8104,9 @@ in with self; { debugr = derive2 { name="debugr"; version="0.0.1"; sha256="0lfq0s0hibd00558vl3dmvrkzxjc7q62xr8sqzai0pv9a9lhixcn"; depends=[rprojroot rstudioapi]; }; decido = derive2 { name="decido"; version="0.3.0"; sha256="14y3z5ys5y3kffgm0dk92rx4vd1mi9jvxn7pqvwi4jhyx7wx06pw"; depends=[Rcpp]; }; decision = derive2 { name="decision"; version="0.1.0"; sha256="13d0yyg5zp7n3r92l0l1dsffxfph6vacrlzga9rz41l5pja72z6g"; depends=[]; }; - decisionSupport = derive2 { name="decisionSupport"; version="1.109"; sha256="1ijrnbxx6l500jzlwmjrgb6na09avdp0s4gral8kh9zdswnm380n"; depends=[assertthat chillR dplyr fANCOVA ggplot2 ggstance magrittr msm mvtnorm nleqslv patchwork rriskDistributions stringr tidyr tidyselect]; }; + decisionSupport = derive2 { name="decisionSupport"; version="1.110"; sha256="1yqdffrqk18vmna6vv699pa987cd266gihsccs47a2vdhlhgrk2m"; depends=[assertthat chillR dplyr fANCOVA ggplot2 ggstance magrittr msm mvtnorm nleqslv patchwork rriskDistributions stringr tidyr tidyselect]; }; deckgl = derive2 { name="deckgl"; version="0.2.7"; sha256="0ifv6j0kbwayl60bf1rwd1h7424npqsqsvb44ngg7v0ik4bgbyfx"; depends=[base64enc htmltools htmlwidgets jsonlite magrittr readr tibble yaml]; }; - declared = derive2 { name="declared"; version="0.8"; sha256="16i2gahyw853wkb13aa3wc21gidjd8xzgjf1nfppcyixm1qb7fh9"; depends=[admisc]; }; + declared = derive2 { name="declared"; version="0.11"; sha256="1m882i1hrz3zv4hawnypl06izv9d3bb16mhdyhb419b5nh2vksyg"; depends=[admisc]; }; decode = derive2 { name="decode"; version="1.2"; sha256="1qp0765gl3pgfdzjwj7icf3zminxxmrlw6gx3vj51y6c2y5ws4as"; depends=[]; }; decoder = derive2 { name="decoder"; version="1.2.2"; sha256="1jxgd32bn36ldal26wivhdxgjy247l7r4ickacr1p8rrwxvhpk18"; depends=[]; }; decomposedPSF = derive2 { name="decomposedPSF"; version="0.1.3"; sha256="0p9n0qi21facdp9c4fzs78ap4w1wvpvkv51kgx1gkr949kw8cv4n"; depends=[forecast PSF Rlibeemd tseries]; }; @@ -8123,7 +8143,7 @@ in with self; { deldir = derive2 { name="deldir"; version="1.0-6"; sha256="1igq0l2knsbhizncgydcsidgkvvlwwlkrifbcdyhnzk0bhrdixkd"; depends=[]; }; delt = derive2 { name="delt"; version="0.8.2"; sha256="06g03wy9r2qvly0lnv5fv4k366mhlk56qkvak0xaxy99p1i34kmv"; depends=[denpro]; }; deltaPlotR = derive2 { name="deltaPlotR"; version="1.6"; sha256="15vjg3viyfrxvvh34p8i7j8p0vpg5628g8198adhi0i2ri3ygz9a"; depends=[MASS]; }; - deltar = derive2 { name="deltar"; version="1.0.0"; sha256="1ki89ysz4qlq5z094ybg3aqfcb6g633ccvpj1cg6nri9z5qjwpm1"; depends=[Bchron]; }; + deltaccd = derive2 { name="deltaccd"; version="1.0.2"; sha256="1iqyycjfmclr9y8gfj61naxwafjgmfwahyrc110qxzb239b501rw"; depends=[data_table doRNG foreach ggplot2 rlang scales statmod]; }; dematel = derive2 { name="dematel"; version="0.1.0"; sha256="1m84sd46cg7188wnjx09g88xvxdp7i0mdxnynwlqkgcmnwx4bdjw"; depends=[ggplot2 knitr]; }; deming = derive2 { name="deming"; version="1.4"; sha256="1yx3qrbik6jpqgsi0gqgc7y2cra13qlisg2gq8rvnv57nvcvb421"; depends=[boot]; }; demoGraphic = derive2 { name="demoGraphic"; version="0.1.0"; sha256="0b2fqa0z875wwd7qdqh2qfvkzh2cpbmck4smf9c0p31wv5yin0sq"; depends=[magrittr MASS officer]; }; @@ -8134,7 +8154,7 @@ in with self; { demu = derive2 { name="demu"; version="0.3.0"; sha256="1mp5iz8mg0d6cyqi3f6fdhk6x5xxvng5bi13b7jnlp60wpjrq0il"; depends=[ClusterR fields Matrix Rcpp RcppArmadillo spam]; }; dendRoAnalyst = derive2 { name="dendRoAnalyst"; version="0.1.3"; sha256="1rg8xra4z3q9czkqydn2587iqwp7whscv8camrkhjpc38788cf4q"; depends=[boot pspline zoo]; }; dendextend = derive2 { name="dendextend"; version="1.15.2"; sha256="06wjs8451hmnimzgngpzbai3yrgy33133vzzapa8jib9crdqi8sb"; depends=[ggplot2 magrittr viridis]; }; - dendroTools = derive2 { name="dendroTools"; version="1.2.6"; sha256="0s395c24k0q0wp818mswph09f2qi9cywggbyyxd8482n34g1pq6x"; depends=[boot brnn Cubist dplR dplyr ggplot2 knitr lubridate magrittr MLmetrics oce plotly psych randomForest reshape2 scales viridis]; }; + dendroTools = derive2 { name="dendroTools"; version="1.2.7"; sha256="00a37mvka1wqj0jghgss3jp4jwvcr74lpf5shmba3jwiaapm3ab9"; depends=[boot brnn Cubist dplR dplyr ggplot2 knitr lubridate magrittr MLmetrics oce plotly psych randomForest reshape2 scales viridis]; }; dendroextras = derive2 { name="dendroextras"; version="0.2.3"; sha256="0hb7crbgsnbcwvbk05iz5ik45n7zgysmwjj6xc46131yd8l0i1qx"; depends=[]; }; dendrometeR = derive2 { name="dendrometeR"; version="1.0.0"; sha256="1par27ipgbfbrmdlwvkf82i5dgnfrcawmavakrf8lplin2hhb7gs"; depends=[forecast pspline zoo]; }; dendsort = derive2 { name="dendsort"; version="0.3.4"; sha256="0rs7y471wrhkgibxdmfh5xhp3pa004rrlm2w08b6qli5gq4im5d2"; depends=[]; }; @@ -8145,7 +8165,7 @@ in with self; { densEstBayes = derive2 { name="densEstBayes"; version="1.0-2"; sha256="16fb7vkic9q5p8s4f0f215zmb36fcizqr4r2vm9dxxj9rasrg2f3"; depends=[BH MASS nlme Rcpp RcppArmadillo RcppEigen RcppParallel rstan StanHeaders]; }; denseFLMM = derive2 { name="denseFLMM"; version="0.1.2"; sha256="1lfhd73zvvz6glq41lb2a9x63fjwjfp53zmy9g78fg6gz5lbnbpm"; depends=[MASS Matrix mgcv mvtnorm]; }; densitr = derive2 { name="densitr"; version="0.1.0"; sha256="1vqdvfka6wdfxqfy2qcacss0h6wxykmwyijr5blpvlpafjdmngaq"; depends=[changepoint]; }; - densityClust = derive2 { name="densityClust"; version="0.3"; sha256="1zry0vafajzmr37aylglxfvwplhdygbkb9cvzvh8cy0xgnjrnx13"; depends=[FNN ggplot2 ggrepel gridExtra RColorBrewer Rcpp Rtsne]; }; + densityClust = derive2 { name="densityClust"; version="0.3.2"; sha256="05x2fi1zdnkrg2nimf8k904j3lpyw0f7nmk6ax5p7x7a98wb2iqs"; depends=[FNN ggplot2 ggrepel gridExtra RColorBrewer Rcpp Rtsne]; }; densratio = derive2 { name="densratio"; version="0.2.1"; sha256="0x333kfx5mdzzjsqy37j4bmv9iddlgp3wi4774lx8d159lbr6irp"; depends=[]; }; denstrip = derive2 { name="denstrip"; version="1.5.4"; sha256="0hzxphj740q6pfa1q42knr7n12bmnawg7b2fs74msxn83dka5cmq"; depends=[lattice]; }; denvax = derive2 { name="denvax"; version="0.1.2"; sha256="0a8x7z7jagshc5h6xy24xrvqv0gm08f78ik6y8ki4i0mhl8c5fyx"; depends=[]; }; @@ -8159,7 +8179,7 @@ in with self; { depthTools = derive2 { name="depthTools"; version="0.7"; sha256="00pn4ccsg1hjv83xqk4g0g24cz2a87shlbg8kd2dri4dcagzifg0"; depends=[]; }; dequer = derive2 { name="dequer"; version="2.0-1"; sha256="04kzlff8xa733qkkx0gacgig7d4l7yvgqmzva0mj8di12byh214p"; depends=[]; }; derivmkts = derive2 { name="derivmkts"; version="0.2.4"; sha256="1ncqhi6f69jv75dad1l9wsrfxi5m2wizywikkbg7i9qmh42xkh8w"; depends=[mnormt]; }; - desc = derive2 { name="desc"; version="1.4.0"; sha256="0jfnwn1kpiill8v4hmzdk90yz4gk2ha0prr2p0hq36s40v3y8842"; depends=[crayon R6 rprojroot]; }; + desc = derive2 { name="desc"; version="1.4.1"; sha256="0m3g5m0g08k674zh4lq0ihmqiwz8jpsfqrdwfqp5p4ngxi8vp7lg"; depends=[cli R6 rprojroot]; }; descomponer = derive2 { name="descomponer"; version="1.6"; sha256="1yznb6j850gap1bacvx5dkh4030x38041ll61z6an6h7j71yyc5p"; depends=[]; }; descr = derive2 { name="descr"; version="1.1.5"; sha256="00l3h71y4yfys60sqhifxyxvnjbkxxfxdb4zqjyy0v91pf3z2zv9"; depends=[xtable]; }; describedata = derive2 { name="describedata"; version="0.1.0"; sha256="10ryy886jr2gwi6h90girl82ivwrmhz1vcwi4f6khmmpwsy95hav"; depends=[broom dplyr forcats ggplot2 haven lmtest purrr rlang stringr tibble tidyr]; }; @@ -8194,9 +8214,9 @@ in with self; { devoid = derive2 { name="devoid"; version="0.1.1"; sha256="14cf75wih7401vmrfmswc9cihgmbyn90wg2vjkzv628mm5fgg01h"; depends=[]; }; devtoolbox = derive2 { name="devtoolbox"; version="0.1.0"; sha256="0ry0liw7a27nndhb5p7migx2ji2g3n1qpip1yr7mlikb7vxap2d6"; depends=[dplyr DT flexdashboard ggiraph ggplot2 gh htmltools httr jsonlite lubridate magrittr markdown purrr reshape2 rmarkdown stringr tidyr tidyselect]; }; devtools = derive2 { name="devtools"; version="2.4.3"; sha256="0kvbw218jp8pd2lgdjyn94v2iji75s385hkn1qbikcm0pjlmj8g4"; depends=[callr cli desc ellipsis fs httr lifecycle memoise pkgbuild pkgload rcmdcheck remotes rlang roxygen2 rstudioapi rversions sessioninfo testthat usethis withr]; }; - dexter = derive2 { name="dexter"; version="1.1.4"; sha256="0clyhpnzm8an5hcs4lf34ydqnvj0gpsikfwhd3pmh4sg9rkhiwl5"; depends=[DBI dplyr MASS Rcpp RcppArmadillo rlang RSQLite tidyr]; }; - dexterMST = derive2 { name="dexterMST"; version="0.9.2"; sha256="118y8a33l85klj6w5vj5mkr64xvmbf16n6ff3nsk7nx7v1f26x6d"; depends=[crayon DBI dexter dplyr igraph Rcpp RcppArmadillo rlang RSQLite tidyr]; }; - dextergui = derive2 { name="dextergui"; version="0.2.4"; sha256="1vaxgfclbnqdgsgpa0nlqrn0d9fxxj73ggsdp5hnww9j7qwhvn2w"; depends=[Cairo DBI dexter dplyr DT ggExtra ggplot2 ggridges htmltools htmlwidgets jsonlite networkD3 RCurl readODS readxl rlang shiny shinyBS shinyFiles shinyjs tibble tidyr writexl]; }; + dexter = derive2 { name="dexter"; version="1.1.5"; sha256="013yjv36nfkqxch513gwhasbiwch084235q02lblqg1hyg1fswnx"; depends=[DBI dplyr MASS Rcpp RcppArmadillo rlang RSQLite tidyr]; }; + dexterMST = derive2 { name="dexterMST"; version="0.9.3"; sha256="1c30v83lx6p90l8a9kia5p0361j3ymbabyb2r6dkkak8n8zwfydl"; depends=[crayon DBI dexter dplyr igraph Rcpp RcppArmadillo rlang RSQLite tidyr]; }; + dextergui = derive2 { name="dextergui"; version="0.2.5"; sha256="1ms5ypi734yyjp4bxd3hvllm9lpamdk9ynlgfcypw0sji5x7g19j"; depends=[Cairo DBI dexter dplyr DT ggExtra ggplot2 ggridges htmltools htmlwidgets jsonlite networkD3 RCurl readODS readxl rlang shiny shinyBS shinyFiles shinyjs tibble tidyr writexl]; }; dfCompare = derive2 { name="dfCompare"; version="1.0.0"; sha256="1lhx69j0bkjbnp5jz23hrbxjcf04vf3big4k593ixz003xs2077f"; depends=[]; }; dfadjust = derive2 { name="dfadjust"; version="1.0.3"; sha256="0s9wsws1nxf3fij0jgi6aqqvbx0clk1rdjjyw9in3d1a6ywzcx89"; depends=[]; }; dfcomb = derive2 { name="dfcomb"; version="3.0-0"; sha256="1vsqlhmajv33nbnh8igisyv3rzzh2fdwbk5y0zlnrwvr79r19k5w"; depends=[BH Rcpp RcppProgress]; }; @@ -8232,7 +8252,7 @@ in with self; { dialrjars = derive2 { name="dialrjars"; version="8.12.42"; sha256="0fn2ic9vllar3wgmgvzx4b2sw5sixzfnjmmk71fnmkii2mfp3s38"; depends=[rJava]; }; dials = derive2 { name="dials"; version="0.1.0"; sha256="02i9ddzi7gk5bwg87x8bpazk89mn102awgxzp9yw85dgbafqsydh"; depends=[DiceDesign dplyr glue hardhat lifecycle purrr rlang scales tibble vctrs withr]; }; diaplt = derive2 { name="diaplt"; version="1.3.0"; sha256="1kkqhkv3s8rrpqd05jidjdnqmlnb3s9f8rr34rfqj7k4nh0qzzcz"; depends=[]; }; - diathor = derive2 { name="diathor"; version="0.0.9"; sha256="1p6y89vi37a8i3fwnj7rb0hdggk6qrxnsrw0sbpajzkwv1jvyal0"; depends=[algaeClassify data_table ggplot2 purrr stringdist stringr tibble tidyr vegan]; }; + dibble = derive2 { name="dibble"; version="0.1.0"; sha256="1b1z53w6n1ks3iiz1p2rs7ry9w03g5c8vzx4i3zqaqh16shn8p26"; depends=[dplyr pillar rlang tibble tidyselect vctrs]; }; dice = derive2 { name="dice"; version="1.2"; sha256="0gic7lqnsdmwv3dbzwwmcwdfyfqlq8kpr2pciqphd1j2ligzwl3s"; depends=[gtools]; }; diceR = derive2 { name="diceR"; version="1.1.0"; sha256="01jh69b7x4agw5w2y9dal9g0nbq8s1ff36vcz2xfsjc0vi76irfs"; depends=[abind assertthat class clue clusterCrit clValid dplyr ggplot2 infotheo klaR magrittr mclust NMF purrr RankAggreg Rcpp stringr tidyr yardstick]; }; dichromat = derive2 { name="dichromat"; version="2.0-0"; sha256="1l8db1nk29ccqg3mkbafvfiw0775iq4gapysf88xq2zp6spiw59i"; depends=[]; }; @@ -8293,11 +8313,11 @@ in with self; { dirichletprocess = derive2 { name="dirichletprocess"; version="0.4.0"; sha256="1gspaynxq5czvnpni57swcqqy17lryjlh3cn9x0mghl527rkbpna"; depends=[ggplot2 gtools mvtnorm]; }; dirmcmc = derive2 { name="dirmcmc"; version="1.3.3"; sha256="117p3jvinmha7a2phcpzq38ig05kcranp15xbxqvv0cgh3c95fjr"; depends=[mcmcse]; }; dirmult = derive2 { name="dirmult"; version="0.1.3-4"; sha256="1r9bhw1z0c1cgfv7jc0pvdx3fpnwplkxwz8j8jjvw14zyx803rnz"; depends=[]; }; - disaggR = derive2 { name="disaggR"; version="1.0.2"; sha256="1vm9p0kil0yr18g1d8xqkf89la3fnxz6r8b6hjlbpv96j3gj0zjk"; depends=[RColorBrewer]; }; + disaggR = derive2 { name="disaggR"; version="1.0.3.1"; sha256="1nl19kr14i73c165nagb8crhzn8yr18q21f2i7508n90yl61cnfk"; depends=[RColorBrewer]; }; disaggregation = derive2 { name="disaggregation"; version="0.1.3"; sha256="04wmwwhmcgi1cdr8iyhilsphpzb7r5xs04vhqx5z01y7cgardivx"; depends=[cowplot doParallel dplyr foreach ggplot2 maptools Matrix raster RcppEigen rgdal rgeos sp sparseMVN splancs TMB]; }; disastr_api = derive2 { name="disastr.api"; version="1.0.5"; sha256="1h5i6pwak16w0gdk8qjz4w9qpffjhzlsrvjkb4acrvgjgrsvz9kp"; depends=[httr jsonlite]; }; discAUC = derive2 { name="discAUC"; version="0.4.0"; sha256="1l80xz5wrcikrs2b2i05jq3qkx468k891gwmmy5d1mymp4si3z0h"; depends=[dplyr glue rlang tibble]; }; - discSurv = derive2 { name="discSurv"; version="1.4.1"; sha256="0xi016ah8xc8bv92qvyslvx30anncrki49ccg3qw79yh5vzns1wk"; depends=[data_table functional mgcv mvtnorm]; }; + discSurv = derive2 { name="discSurv"; version="2.0.0"; sha256="0k585cyz02vqk4w7w20rhn6g9rspmmlbdpv7k837021iyhwwb838"; depends=[data_table functional geepack mgcv mvnfast mvtnorm ranger Rdpack rpart treeClust VGAM]; }; discfrail = derive2 { name="discfrail"; version="0.1"; sha256="1ll8c0fwwmz2yw8w582422r8bk9lr1570d7m7w2n1flrnqpqmk8j"; depends=[Matrix numDeriv survival]; }; discgolf = derive2 { name="discgolf"; version="0.2.0"; sha256="07clh1awnibgrh7vl4a51r8dbya2rbmicm8v8x8mq8h8am2b3j0s"; depends=[crul jsonlite xml2]; }; discharge = derive2 { name="discharge"; version="1.0.0"; sha256="1hwsdrbajmpfdc9arb1pjhx2w45dy3zrba9ibcrnpyqhhr4i1c5m"; depends=[boot checkmate CircStats ggplot2 lmom]; }; @@ -8314,11 +8334,11 @@ in with self; { discretecdAlgorithm = derive2 { name="discretecdAlgorithm"; version="0.0.7"; sha256="01x3qfjj7dwv0m9q8zdhfrpbj9ys9y5p7d3z8ywjrqy4jw88svjs"; depends=[igraph Rcpp RcppEigen sparsebnUtils]; }; discretefit = derive2 { name="discretefit"; version="0.1.2"; sha256="0xyv3lff6xmz9q1k2lprll68fw9ckqhgl1z87pd9rm0ldy969m9p"; depends=[Rcpp]; }; discretization = derive2 { name="discretization"; version="1.0-1"; sha256="00vq2qsssnvgpx7ihbi9wcafpb29rgv01r06fwqf9nmv5hpwqbmp"; depends=[]; }; - discrim = derive2 { name="discrim"; version="0.1.3"; sha256="1m54qq2a9k5xphmz7a1701vxvfzyb0g477mb74x0s152gj49xcm0"; depends=[dials parsnip purrr rlang tibble withr]; }; + discrim = derive2 { name="discrim"; version="0.2.0"; sha256="1w8ji9wj2wm8gvzi3w78dcf6jabjzn32hf2saiz1mybix63rpqxd"; depends=[dials parsnip purrr rlang tibble withr]; }; disdat = derive2 { name="disdat"; version="1.0-0"; sha256="1q8v40m0vjni3kx0f04qb99adxcx783p9lfixvvq6viz13v1ygcw"; depends=[]; }; diseasemapping = derive2 { name="diseasemapping"; version="1.5.1"; sha256="0pqilkl56753j1fxy6mh7nx24n6qg2j5faxyxj6abcm6xrnkhmy9"; depends=[rgeos sp]; }; - diseq = derive2 { name="diseq"; version="0.4.1"; sha256="0cczj2qy7lr7a2sd1k55l3pvc702vjzgxpmpyv3r7fpaaiv1kp9m"; depends=[bbmle dplyr Formula magrittr MASS Rcpp RcppGSL RcppParallel rlang systemfit tibble tidyr]; }; - disk_frame = derive2 { name="disk.frame"; version="0.6.1"; sha256="0bqsj9qbjy0mfdbygxi65657c4r0bi215r6v7d3swq649pz09r3j"; depends=[benchmarkme bigreadr bit64 crayon data_table dplyr fs fst future future_apply globals glue jsonlite pryr purrr Rcpp rlang stringr]; }; + diseq = derive2 { name="diseq"; version="0.4.3"; sha256="1dfcgw1qzw2fax5vzw9fjh72hnim2n4d3wa3nd616vx6ydly216l"; depends=[bbmle dplyr Formula magrittr MASS Rcpp RcppGSL RcppParallel rlang systemfit tibble tidyr]; }; + disk_frame = derive2 { name="disk.frame"; version="0.7.2"; sha256="016sxjvbw8j6inwr1y66hck1dzpnjr79v2fiiylcpgdnc39hc0hn"; depends=[arrow benchmarkme bigreadr bit64 crayon data_table dplyr fs fst future future_apply globals glue jsonlite pryr purrr Rcpp rlang stringr]; }; diskImageR = derive2 { name="diskImageR"; version="1.0.0"; sha256="1r19k5fdjn6vkn11p5df77fnxfqaz3nciiaai0f3pr2bgpfppzka"; depends=[subplex zoo]; }; dismo = derive2 { name="dismo"; version="1.3-5"; sha256="1rqf6h4imbqvs7hjd1k4my6154wg0qnmnp5byan403rcshr1jbl1"; depends=[raster Rcpp sp terra]; }; disordR = derive2 { name="disordR"; version="0.0-9"; sha256="1x9lvdwgvi6gmjfgl03ccqkjpmibz3kswlqnw8flj7x2sx969i4h"; depends=[digest]; }; @@ -8329,7 +8349,7 @@ in with self; { disposables = derive2 { name="disposables"; version="1.0.3"; sha256="0q5wacjclspn2fh7z1pg2l67ll51n75wck5h2fdq2vxy3qn3vwis"; depends=[]; }; dispositionEffect = derive2 { name="dispositionEffect"; version="1.0.0"; sha256="0vx87xylpx3np6afwwylzwp0nb9g8r04ngn8mgr88ycys815fkqw"; depends=[dplyr lubridate magrittr progress purrr rlang]; }; disprofas = derive2 { name="disprofas"; version="0.1.3"; sha256="16gbd9algrs6pqid8k96p9r9pzfy337jv506alnajvwirs59sldd"; depends=[boot ggplot2]; }; - disprose = derive2 { name="disprose"; version="0.1.4"; sha256="1lqg2dqbxikvfsnw7kka5kdiz1c7cwzm0ns4jz90bss3nmi3lfy4"; depends=[]; }; + disprose = derive2 { name="disprose"; version="0.1.5"; sha256="0drnqpgmisavy9rqk3p0f1safw4fshpjn9lq3vjay4k5s8dg37h7"; depends=[]; }; dissCqN = derive2 { name="dissCqN"; version="0.1.0"; sha256="142f4ggzwdhf2vm9kisayna9a5j17mmy2jckhjrvxh4k5dc3ssf6"; depends=[]; }; dissUtils = derive2 { name="dissUtils"; version="1.0"; sha256="00fzlmkdfw2s3k824wp2pk3v7cvxnywi1hfp86g4mm95z2qlw9br"; depends=[]; }; dissever = derive2 { name="dissever"; version="0.2-3"; sha256="1lgs5nmv3lpm4gsryxvcwiwibvvg9flv23q8maisp77x49c18qcp"; depends=[boot caret dplyr foreach magrittr plyr raster sp viridis]; }; @@ -8347,7 +8367,7 @@ in with self; { disto = derive2 { name="disto"; version="0.2.0"; sha256="09pafy8y1ifgglqmal32dy34acx06ypsq2bgwsn6fjiqr9kw401j"; depends=[assertthat broom dplyr factoextra fastcluster fastmatch ggplot2 pbapply proxy tidyr]; }; distory = derive2 { name="distory"; version="1.4.4"; sha256="1ljrs91h4v1h5lb295hjki8bmra2lg3d1bn5x731pnv43pf3ck06"; depends=[ape]; }; distr = derive2 { name="distr"; version="2.8.0"; sha256="1dyff4m33xmw6hxb3jxzr8vvajg3qz3rfcrfxjxwsswlddfz0zdv"; depends=[MASS sfsmisc startupmsg]; }; - distr6 = derive2 { name="distr6"; version="1.6.4"; sha256="1h1f42mcsj44px1j7pnj0mmbi4129nsai2nsyvhqrs7iadyx3z27"; depends=[checkmate data_table param6 R6 Rcpp set6]; }; + distr6 = derive2 { name="distr6"; version="1.6.7"; sha256="0drk81lhmfx199pb5vq5chbxcm8774iqyzw605pj6n2jcz09zhq2"; depends=[checkmate data_table param6 R6 Rcpp set6]; }; distrDoc = derive2 { name="distrDoc"; version="2.8.0"; sha256="1iq2gbfbsf3h279yh3fnqsi39gdw15vc6r1g33xcb8kgmmqmvf0p"; depends=[distr distrEx distrMod distrSim distrTeach distrTEst MASS RandVar startupmsg]; }; distrEllipse = derive2 { name="distrEllipse"; version="2.8.0"; sha256="1ymfa8xpgs8zjp4psiwmll5z0vji496fivxmcavspzxy31cw70wx"; depends=[distr distrEx distrSim mvtnorm setRNG startupmsg]; }; distrEx = derive2 { name="distrEx"; version="2.8.0"; sha256="1gwhsnlrnzyp2x97d9wfdy5pa9z3q5il934wjv4kxs9wsvkwsr5h"; depends=[distr startupmsg]; }; @@ -8378,7 +8398,7 @@ in with self; { divest = derive2 { name="divest"; version="0.10.2"; sha256="1r49glh66vdrj7hp8xlqc3g1c13hjl24x7rhd27vv6l1jgvhllgb"; depends=[Rcpp RNifti]; }; divo = derive2 { name="divo"; version="1.0.1"; sha256="06c4kjl6llvvdr2gk480jcmj2abmqwph7x4vk5nflxm7piimvg7v"; depends=[cluster]; }; divseg = derive2 { name="divseg"; version="0.0.4"; sha256="0iwxckdfsb28wgpv6d1r8idyn974c38ylpiaxsvn9m8x1wnpnbp7"; depends=[dplyr magrittr rlang sf tibble tidyselect units]; }; - dixon = derive2 { name="dixon"; version="0.0-7"; sha256="0crpzkshil8836axcywj0r95qmkv31vrw9gqnjqj3xgx6hml6xym"; depends=[spatstat spatstat_geom splancs]; }; + dixon = derive2 { name="dixon"; version="0.0-8"; sha256="1mflg9mpcidjq1ljgzqdwp6x0g930v9y5jgma1qxi5c5l3irkvg3"; depends=[spatstat spatstat_geom splancs]; }; dixonTest = derive2 { name="dixonTest"; version="1.0.3"; sha256="1a3yc30g5rbb0jhm2b0iir5i1dy4jyl67spkhx4yysg4snz131wv"; depends=[]; }; diyar = derive2 { name="diyar"; version="0.4.1"; sha256="0ydpwvjg1vlqn571lwcgsi1ahczqd316c8qc1szg36ashn1imj7f"; depends=[ggplot2 Rfast rlang]; }; dkDNA = derive2 { name="dkDNA"; version="0.1.1"; sha256="0ycyzn5bmhjl5idp0lndffkninpm9n23wrkrzi59ac8z8ghsnhf4"; depends=[]; }; @@ -8441,7 +8461,7 @@ in with self; { doex = derive2 { name="doex"; version="1.2"; sha256="1r999z30ipa04pgck0hfalqxihb1bj8sdhlkkhf4plb7maaz3qm3"; depends=[]; }; dominanceanalysis = derive2 { name="dominanceanalysis"; version="2.0.0"; sha256="0qxldvlgbysy9j17kb0a9p132a04a4j12h4m0r70zv2752fj24c0"; depends=[]; }; domino = derive2 { name="domino"; version="0.3.1"; sha256="0f67w0z5jy82kgm3l1rji430ayigw30vmmwp3i1nz0xibsx7jxv4"; depends=[]; }; - domir = derive2 { name="domir"; version="0.2.0"; sha256="0zy0ymsx6m6d26szpk3h85yknqraa7gxi8765qdxjs1cajl0dgll"; depends=[]; }; + domir = derive2 { name="domir"; version="0.3.0"; sha256="141xs38j0cdrygqv7pdrbrbfa7b74dgk01d6apxvk3lafy1b8fqv"; depends=[]; }; donut = derive2 { name="donut"; version="1.0.2"; sha256="0idynkhcdn9va32m1n1rxjyb7ghbkhyy1959wks2bn1a7k4yg87i"; depends=[]; }; doolkit = derive2 { name="doolkit"; version="1.0.1"; sha256="09kgd1ca1aacvh9gjfns85m36zl5bj095j21avn1jgp8h5mk7301"; depends=[concaveman ggplot2 igraph MASS Morpho rgl Rvcg sp tis usethis]; }; doremi = derive2 { name="doremi"; version="1.0.0"; sha256="005kp6f4jh8y1ykhri3mjnvc9w66b1a51bji574rkbxd1ans6mal"; depends=[data_table deSolve futile_logger ggplot2 gridExtra lme4 lmerTest zoo]; }; @@ -8461,7 +8481,7 @@ in with self; { doubt = derive2 { name="doubt"; version="0.1.0"; sha256="16avp0f7ks2zd4ckakvfm57zng2jk0fg3fz6vbm05lzhqymh6y30"; depends=[unglue]; }; downlit = derive2 { name="downlit"; version="0.4.0"; sha256="10zvrqdpwavdy97h3q26bqh3k63z61fmc04w9vwsnvmnv8hnh3vl"; depends=[brio desc digest evaluate fansi memoise rlang vctrs yaml]; }; downloader = derive2 { name="downloader"; version="0.4"; sha256="1axggnsc27zzgr7snf41j3zd1vp3nfpmq4zj4d01axc709dyg40q"; depends=[digest]; }; - downloadthis = derive2 { name="downloadthis"; version="0.3.0"; sha256="11k53xb2cl324qr77l26jndd07wyrj9gwl0dj59xnqcsknlqdjz1"; depends=[bsplus fs ggplot2 glue htmltools jsonlite magrittr mime readr writexl zip]; }; + downloadthis = derive2 { name="downloadthis"; version="0.3.1"; sha256="1367hxfi5si9df8pnnq8v8cx6n91hlp95yyl7as8875qbfpjw10v"; depends=[base64enc bsplus fs ggplot2 htmltools magrittr mime readr writexl zip]; }; downscale = derive2 { name="downscale"; version="4.2-0"; sha256="1ha36jiahvrg75qwzp9wpgnqqizw6ivc02q24fyz5frzssda6wd8"; depends=[cubature minpack_lm raster Rmpfr sp]; }; downscaledl = derive2 { name="downscaledl"; version="1.0"; sha256="0lqxngzpxj65b48j5w0n8dg6fp4lgg5zpgxc2wj6d9wh5f97l71b"; depends=[dplyr keras magrittr raster Rcpp RcppArmadillo rgdal rstack sp tensorflow]; }; downsize = derive2 { name="downsize"; version="0.2.2"; sha256="18b9shd79z0bsdnp0apqqwv6c73j4wnfiv41ywqz761nmxbldxbn"; depends=[magrittr R_utils]; }; @@ -8472,7 +8492,7 @@ in with self; { dplR = derive2 { name="dplR"; version="1.7.2"; sha256="1g57azixwv3c6x60l1kqdnzylf0ayv3s15wi0av2qcca35z3baa1"; depends=[digest lattice Matrix matrixStats plyr png R_utils signal stringi stringr XML]; }; dplRCon = derive2 { name="dplRCon"; version="1.0"; sha256="10xnawgnhxp5y949fxs1vvadc1qz2ldy0s9w9w7kf6iqh59d35sw"; depends=[]; }; dplbnDE = derive2 { name="dplbnDE"; version="0.1.1"; sha256="0hwb4lvydqlkbcxp3jwgzkqk6sqdjkcmkya1cah60sc15n816ksd"; depends=[bnclassify]; }; - dplyr = derive2 { name="dplyr"; version="1.0.7"; sha256="0g8jsxclj9cgm7a2lyazy78sj62rbzw812lsw3fdsbz0pknkmznj"; depends=[ellipsis generics glue lifecycle magrittr pillar R6 rlang tibble tidyselect vctrs]; }; + dplyr = derive2 { name="dplyr"; version="1.0.8"; sha256="0xb04ckp29pva1h2rfahqhmk9gcwp2dbbx3av8ip40v7dnha6siv"; depends=[generics glue lifecycle magrittr pillar R6 rlang tibble tidyselect vctrs]; }; dplyr_teradata = derive2 { name="dplyr.teradata"; version="0.4.1"; sha256="0ygn8cq4dnmzzxfskcir7g0bksgby5sw2j135gvrk599z3v6avg1"; depends=[bit64 DBI dbplyr dplyr odbc]; }; dplyrAssist = derive2 { name="dplyrAssist"; version="0.1.0"; sha256="1lqizh70b1apyr4578917gv6s0i7p84ak96a57kvwipmh36a4ywn"; depends=[DT magrittr miniUI plyr rstudioapi shiny shinyAce shinyWidgets stringr tidyr tidyverse]; }; dpmr = derive2 { name="dpmr"; version="0.1.9"; sha256="1cnjywkvjb4fhbf4shjmsrq47f1fg2x21hcm1q5512bm0wg9i6jd"; depends=[digest httr jsonlite magrittr rio]; }; @@ -8531,6 +8551,7 @@ in with self; { dst = derive2 { name="dst"; version="1.5.1"; sha256="08cw09hf5jx1qfmrqmhm4713gzq21p0ss3nx7qrs92mpsvprq3yc"; depends=[]; }; dstat = derive2 { name="dstat"; version="1.0.4"; sha256="023jp0xdbg200ww1gnr3fzgjqd82acag0jps7q6j6m27q11psvgz"; depends=[]; }; dtangle = derive2 { name="dtangle"; version="2.0.9"; sha256="0yg1fbrqixqp93vdw3grvz1la5l2kidgs730qp6yihkp3260cxf3"; depends=[DEoptimR]; }; + dtgiw = derive2 { name="dtgiw"; version="0.1.0"; sha256="0iamvnf8s19wxs1wddzag4sgg6dhcplgj4gz8z2zalskpx02ss11"; depends=[]; }; dti = derive2 { name="dti"; version="1.5.1"; sha256="08da7v7sl88g2jixfplvw9rc5rvlifq3fvyrgh9naa5jsmd8h5ia"; depends=[adimpro aws awsMethods gsl oro_dicom oro_nifti quadprog rgl]; }; dtp = derive2 { name="dtp"; version="0.1.0"; sha256="0qy8nrbq22bfbajkxq6blkq7583pc5mb392gmqb3c9daxmqn42vb"; depends=[Formula gtools plyr]; }; dtpcrm = derive2 { name="dtpcrm"; version="0.1.1"; sha256="0k25fm0z3snpx1v2kwd50svgnkjhn5c0hy1gnlw2lif6rjz1fzd9"; depends=[dfcrm diagram]; }; @@ -8539,14 +8560,15 @@ in with self; { dtree = derive2 { name="dtree"; version="0.4.2"; sha256="1cpv0pyf515610djxzfw1c83p3alk5a93clg4x9gk7a7qy4cyhr1"; depends=[caret evtree party partykit rpart]; }; dtt = derive2 { name="dtt"; version="0.1-2"; sha256="0n8gj5iylfagdbaqirpykb01a9difsy4zl6qq55f0ghvazxqdvmn"; depends=[]; }; dttr2 = derive2 { name="dttr2"; version="0.4.0"; sha256="1a7fmby2bassj3wnx2wk3c4fzzx63saw3963kfs6pq58cbwpqk09"; depends=[chk hms lifecycle]; }; + dtts = derive2 { name="dtts"; version="0.1.0"; sha256="0jha4fpx7fi9xrw0677i07ip7ydrvyq8g2lfy8g80jkfy6d6pbdd"; depends=[bit64 data_table nanotime Rcpp RcppCCTZ RcppDate]; }; dtw = derive2 { name="dtw"; version="1.22-3"; sha256="004gm4mzgdzdj807j3bwqsv5lizmnmz5jq514bdjshhkysnzjz6z"; depends=[proxy]; }; dtwSat = derive2 { name="dtwSat"; version="0.2.7"; sha256="16crcvwj1s45gkg1gl6blll64wf4676qmzrx0kv55sylq0rjlxhf"; depends=[caret data_table dtw ggplot2 lubridate mgcv plyr proxy raster RColorBrewer Rdpack reshape2 rgdal scales sp xtable zoo]; }; - dtwclust = derive2 { name="dtwclust"; version="5.5.7"; sha256="1frcji5wrwdggww0x4c0mniaxd5d2xjnvadz2vbq046hz46srn63"; depends=[clue cluster dplyr dtw flexclust foreach ggplot2 ggrepel Matrix proxy Rcpp RcppArmadillo RcppParallel RcppThread reshape2 RSpectra shiny shinyjs]; }; + dtwclust = derive2 { name="dtwclust"; version="5.5.8"; sha256="11kyppfhcw6p9dw8mp1rxj1ba293v0dlcw8r32zz9ji2lmnixv6n"; depends=[clue cluster dplyr dtw flexclust foreach ggplot2 ggrepel Matrix proxy Rcpp RcppArmadillo RcppParallel RcppThread reshape2 RSpectra shiny shinyjs]; }; dual = derive2 { name="dual"; version="0.0.3"; sha256="1alxh9mj610m7wgr6a97mpzy5ia9vzckhz6wmxyix7xh9mzbn1gw"; depends=[]; }; dualtrees = derive2 { name="dualtrees"; version="0.1.4"; sha256="05mxwiwnv48jf6ya5qmfc7g2w8wkzhk56k9g0gr2m4cpfab7d5h2"; depends=[]; }; duawranglr = derive2 { name="duawranglr"; version="0.6.7"; sha256="0hxmvyl81xlp3vv1w7462cjfa9hdz5lki0p5pn0ik7dv5aap3wbq"; depends=[digest dplyr haven readr readxl]; }; dub = derive2 { name="dub"; version="0.2.0"; sha256="066lzyk44380mf17vx4db4a3a4rs7zl85mj5hjg172khjbqnbixw"; depends=[]; }; - duckdb = derive2 { name="duckdb"; version="0.3.2"; sha256="0wd7wwxnmkpmm19l55bxxvrvq1y1gxvxs1vlqdnkv1iraqfdhsqr"; depends=[DBI]; }; + duckdb = derive2 { name="duckdb"; version="0.3.2-1"; sha256="1z0zpw4aqr21lwsdb9c8rj8nmnd2xh7cbwqiv3mlmrl0xn6jgjxs"; depends=[DBI]; }; duckduckr = derive2 { name="duckduckr"; version="1.0.0"; sha256="1wki8xvqp5hr27iafd9jbryl9faywfkdkpn0pa0afywbic39k2cm"; depends=[crul jsonlite]; }; dumbbell = derive2 { name="dumbbell"; version="0.1"; sha256="0v0b4wbfskvcnzx10z9v4rf3mq8ccswz63pd6i1z7mggnwv38ps5"; depends=[data_table dplyr ggplot2 rlang rstatix tidyr tidyverse]; }; dummies = derive2 { name="dummies"; version="1.5.6"; sha256="01f84crqx17xd6xy55qxlvsj3knm8lhw7jl26p2rh2w3y0nvqlbm"; depends=[]; }; @@ -8574,6 +8596,7 @@ in with self; { dynaTree = derive2 { name="dynaTree"; version="1.2-10"; sha256="1ng672mlv98xnsbd4xq70hxc8j158la4n63y46rw74granaz29ya"; depends=[]; }; dynamAedes = derive2 { name="dynamAedes"; version="2.0.2"; sha256="0pxj09pz9l2p5g5r31a6jgw283xj12jh3j0x2s63lczj236agl97"; depends=[doParallel drc fields foreach insol raster slam sp]; }; dynamac = derive2 { name="dynamac"; version="0.1.11"; sha256="0dzw4h128z53vwdpkikhxqil0xjrcjrp1zmz0fy2qhq0n74sdyar"; depends=[lmtest MASS]; }; + dynamic = derive2 { name="dynamic"; version="1.1.0"; sha256="15jxly44rj2x79jvps2ln0hrm1384p56yll9jk96w1vhaf3gbsxm"; depends=[dplyr ggplot2 lavaan magrittr patchwork purrr simstandard stringr tibble tidyr]; }; dynamicTreeCut = derive2 { name="dynamicTreeCut"; version="1.63-1"; sha256="1fadbql7g5r2vvlkr89nlrjxwp4yx4xrdqmv077qvmnx9vv0f4w3"; depends=[]; }; dynamichazard = derive2 { name="dynamichazard"; version="1.0.1"; sha256="0z0hyj8qrs7x5cfj20sww1rs207v4bqgz86x0nq1z7mwdrpa7b4v"; depends=[boot Rcpp RcppArmadillo survival]; }; dynatop = derive2 { name="dynatop"; version="0.2.1"; sha256="0by0kvb1pivh5mjsf1a7qcgzz3x160cvgvwwcsynh37askxd2wf1"; depends=[R6 Rcpp xts zoo]; }; @@ -8594,12 +8617,11 @@ in with self; { dynr = derive2 { name="dynr"; version="0.1.16-27"; sha256="0rrzi2x19sdi42vpdi8a3lpsbna5kpf2rzvpf3m632b16wca2vnx"; depends=[car deSolve fda ggplot2 latex2exp magrittr MASS Matrix mice numDeriv plyr Rdpack reshape2 stringi tibble xtable]; }; dynsbm = derive2 { name="dynsbm"; version="0.7"; sha256="169yk539vynjbn89q6vs3l3fx7hk8n3i1msa4jws5vypgljc2rir"; depends=[RColorBrewer Rcpp riverplot]; }; dynsim = derive2 { name="dynsim"; version="1.2.3"; sha256="1fk23cp2hvkn7msxrdc9cnm4pmcmhcdf3q6rwm507bniigrswnx4"; depends=[ggplot2 gridExtra MASS]; }; - dynsurv = derive2 { name="dynsurv"; version="0.4-2"; sha256="0gy9q7l7k37bxm3d37adpvqa45lvr048a309jqc052f179v38mlb"; depends=[BH data_table ggplot2 nleqslv splines2 survival]; }; + dynsurv = derive2 { name="dynsurv"; version="0.4-3"; sha256="1vqf0f3x671vz1w5s2axq159jb1pzjx402qjiwy5ymp05vi0kql3"; depends=[BH data_table ggplot2 nleqslv splines2 survival]; }; dynutils = derive2 { name="dynutils"; version="1.0.9"; sha256="1pcj4igaw1g898xb42kcpzfmqy80xai5ki5bpnkf8hg738wm00qz"; depends=[assertthat crayon desc dplyr magrittr Matrix proxyC purrr Rcpp remotes stringr tibble]; }; dynwrap = derive2 { name="dynwrap"; version="1.2.2"; sha256="0jsikx274nyjq4w286j4wqxrwyv6hvgx923clvdm6ygng1pn1cfr"; depends=[assertthat babelwhale crayon dplyr dynparam dynutils glue igraph magrittr Matrix processx purrr readr reshape2 stringr tibble tidyr yaml]; }; e1071 = derive2 { name="e1071"; version="1.7-9"; sha256="09i2hmyf1bxansqp24p9n9djlzzarclqs173gjjv3fg0giga3ycv"; depends=[class proxy]; }; eAnalytics = derive2 { name="eAnalytics"; version="0.1.4"; sha256="15hhd4q2yxzq3a3awvk81ixa43hk519ym8ap7v1ahghyr0njnyyf"; depends=[dplyr DT energyr googleVis leaflet plotly shiny shinydashboard shinytest shinyWidgets]; }; - eBsc = derive2 { name="eBsc"; version="4.13"; sha256="0n4v07462kxcsyjdy0cjbkn48ryzfnrvj28gxpsxwzn2sddfpl86"; depends=[Brobdingnag MASS Matrix nlme Rcpp RcppArmadillo]; }; eCAR = derive2 { name="eCAR"; version="0.1.1"; sha256="01yfvvp4615vj6sdz751xkmvf5j22jk5fgrj6bhblr6xv0j25xc0"; depends=[Matrix]; }; eChem = derive2 { name="eChem"; version="1.0.0"; sha256="0wmf204hqd4s5har5l9bkcbrbmbqbb8m11w2aivi2gs98f3hy51p"; depends=[animation plot3D]; }; eDMA = derive2 { name="eDMA"; version="1.5-3"; sha256="0wyp81si6lcispqng4c7lii22qbyblvijgnlxvcsnkcxj5hpm76j"; depends=[Rcpp RcppArmadillo xts zoo]; }; @@ -8610,7 +8632,7 @@ in with self; { eMLEloglin = derive2 { name="eMLEloglin"; version="1.0.1"; sha256="087zw48lykls2jcsmpqd5jkrlpr0j423snp00liszjhdpdh59saq"; depends=[lpSolveAPI]; }; eNchange = derive2 { name="eNchange"; version="1.0"; sha256="07vdi05fr6mynb86haas21izdcjiagw14p1h8n0qr1hb3klvs8n5"; depends=[ACDm doParallel foreach hawkes iterators Rcpp]; }; ePCR = derive2 { name="ePCR"; version="0.9.9-11"; sha256="0bkvjvygdnzcc23sslgkcrx11mzwgsqss37lwnbr7rq0jp1sw46s"; depends=[Bolstad2 glmnet hamlet impute pracma survival timeROC]; }; - eRTG3D = derive2 { name="eRTG3D"; version="0.6.4"; sha256="1illpky5p3jappqia1334ra804h18l065r1vkfvpjw8y3hxg2ls2"; depends=[CircStats ggplot2 pbapply plotly raster rasterVis tiff]; }; + eRTG3D = derive2 { name="eRTG3D"; version="0.7.0"; sha256="1d559p1z73zqd5ym0bs7lpp1w1di7sxpryq41hvkj7azrlijy0ry"; depends=[CircStats ggplot2 pbapply plotly raster rasterVis tiff]; }; eRm = derive2 { name="eRm"; version="1.0-2"; sha256="0smym010kswc5vx90qr3x1vl16xj1x1i54rvrj006dc4agc1vmlk"; depends=[colorspace lattice MASS Matrix psych]; }; eSDM = derive2 { name="eSDM"; version="0.3.7"; sha256="0rv5hhjsdkq0837822d52xfvfbj9qx1kjmqj8wyny335gv631205"; depends=[dplyr magrittr purrr rlang ROCR sf shiny units]; }; eSIR = derive2 { name="eSIR"; version="0.4.2"; sha256="05gpskdzjdm3kp7skqvy7dmj8sgh4jhpkm6akmxlfxn8b627zvg1"; depends=[chron coda data_table ggplot2 gtools reshape2 rjags scales]; }; @@ -8625,8 +8647,8 @@ in with self; { easyAHP = derive2 { name="easyAHP"; version="0.1.1"; sha256="161mn90j9ph1p9277mj61hch8ndcv7k9izs32q93y5wp474gzynd"; depends=[]; }; easyCODA = derive2 { name="easyCODA"; version="0.34.3"; sha256="1s1zjjvswl3444m84n6c5sznva4y19kcm171xkcy1zdx3wqmd2m3"; depends=[ca ellipse vegan]; }; easyDes = derive2 { name="easyDes"; version="6.0"; sha256="12p7ls0q9srrz5h0f0996mmw33shrfbya481s0d5d509vbw8ik6d"; depends=[multcomp PMCMRplus]; }; - easyDifferentialGeneCoexpression = derive2 { name="easyDifferentialGeneCoexpression"; version="0.9"; sha256="0nmfkb5dsz93h56vcmz70irr1pd9y8195q5fd079l3bhslabymk2"; depends=[annotate Biobase diffcoexp geneExpressionFromGEO GEOquery jetset magrittr R_utils stringi xml2]; }; - easyNCDF = derive2 { name="easyNCDF"; version="0.1.0"; sha256="1p6b1lcbw2ix6hqqghgfid5yd58yqg1cqnj99r5svli3ivr7x6js"; depends=[abind ClimProjDiags ncdf4]; }; + easyDifferentialGeneCoexpression = derive2 { name="easyDifferentialGeneCoexpression"; version="1.0"; sha256="1dzm01hscq8dyb2kpra3bh9hfh6pjwvxbf4dip18sjgsl8vn058r"; depends=[annotate Biobase diffcoexp geneExpressionFromGEO GEOquery jetset limma magrittr R_utils stringi xml2]; }; + easyNCDF = derive2 { name="easyNCDF"; version="0.1.1"; sha256="1ffpl5zf9i62ifiasimv32j9s9bpmbqi9wrv520124arv4lwcyix"; depends=[abind ClimProjDiags ncdf4]; }; easyPSID = derive2 { name="easyPSID"; version="0.1.2"; sha256="0npih5xpf2a5xw2iz68z9ckm8d4cpradzzdn50rdpg4gqvaq7azp"; depends=[foreign LaF stringr]; }; easyPubMed = derive2 { name="easyPubMed"; version="2.13"; sha256="1wd8idyqz7kgygp34mjp2abx82775ry8l07vsqdlqnc6fdnvg55d"; depends=[]; }; easySVG = derive2 { name="easySVG"; version="0.1.0"; sha256="03gl5gl0yqgpygd4kna79wrhflbnq3zrz3iq2i8hk9xqd83mszh3"; depends=[]; }; @@ -8634,6 +8656,7 @@ in with self; { easyVerification = derive2 { name="easyVerification"; version="0.4.4"; sha256="08mih1arx01vj7cs1jsln644pcvslpyw1rgr6jmv2czr6xd8qb7d"; depends=[pbapply Rcpp SpecsVerification]; }; easyalluvial = derive2 { name="easyalluvial"; version="0.3.0"; sha256="02l0jy3bwp3qrz6g5iknl2fsfqi6a6wzn8q18k8518xczlsn1gbd"; depends=[dplyr forcats ggalluvial ggplot2 ggridges gridExtra magrittr progress progressr purrr randomForest RColorBrewer recipes rlang stringr tibble tidyr]; }; easyanova = derive2 { name="easyanova"; version="7.0"; sha256="1zpwh3r1r0n11hgqzph8f2aac44qb6rpnhk73hcblq0f9vs0an55"; depends=[nlme]; }; + easycensus = derive2 { name="easycensus"; version="0.2.1"; sha256="1kf1pszhxw8b95dy07fby16zspdicjisblngyxs5iahi5fhjfl71"; depends=[cli dplyr rlang stringr tidycensus]; }; easycsv = derive2 { name="easycsv"; version="1.0.8"; sha256="1i2k5372b6a5pypk6m0rsvvkcy0y51pvh57a60rpgqk8q0yq8pig"; depends=[data_table]; }; easylabel = derive2 { name="easylabel"; version="0.2.4"; sha256="1pqdaymcrqjdqj0fhb1q7i1i8p7r7iwzcn08mcq5wlwr52kcpvfy"; depends=[DT gtools plotly RColorBrewer shiny shinybusy shinycssloaders splus2R]; }; easynls = derive2 { name="easynls"; version="5.0"; sha256="1ma2q4y5dxk6q99v880vqfsgy1fha96j7pi8ch699l0pi6bx0d6c"; depends=[]; }; @@ -8656,6 +8679,7 @@ in with self; { ebirdst = derive2 { name="ebirdst"; version="0.3.3"; sha256="05k388rsqjgia9jgnlq799l22zg10kvxs7l4b51kknrpqd5pis8d"; depends=[DBI dplyr fasterize gbm ggplot2 gridExtra jsonlite magrittr mgcv PresenceAbsence rappdirs raster rgdal rlang RSQLite sf stringr tidyr viridisLite xml2]; }; ebmc = derive2 { name="ebmc"; version="1.0.1"; sha256="1z6s1blc2b6b13pk2sd6lcczdcldgjh65cnycjcw7d2g2hnxcifh"; depends=[C50 e1071 pROC randomForest rpart smotefamily]; }; ebmstate = derive2 { name="ebmstate"; version="0.1.3"; sha256="04pg9yqbjrq10ai13c8zm8sy7spnf96ldbbql7qysjl91ljgrqz6"; depends=[HDInterval mstate Rcpp survival]; }; + ebnm = derive2 { name="ebnm"; version="1.0-9"; sha256="0izzfylcmq6zajngjyw85kbr8jys49qcgsadqkj85v2k1hg2jw7q"; depends=[ashr deconvolveR dplyr ggplot2 horseshoe magrittr mixsqp rlang truncnorm trust]; }; ebreg = derive2 { name="ebreg"; version="0.1.3"; sha256="1xrs9afjd5hkdmhglj3md5i5hm7awlcdlccz3y2lw4c73lx31ywz"; depends=[lars Rdpack]; }; ec50estimator = derive2 { name="ec50estimator"; version="0.1.0"; sha256="1zg4p1734q2jzifzfi2lf9wz3687s3cdn0yzkiwbc6w49mgdw877"; depends=[dplyr drc magrittr tibble tidyr]; }; ecap = derive2 { name="ecap"; version="0.1.2"; sha256="0d260y4phh1a7zlj2lgvdf7xd2z14l9djv7nrwa84pwqqyijc7rl"; depends=[ggplot2 quadprog]; }; @@ -8663,8 +8687,7 @@ in with self; { ecce = derive2 { name="ecce"; version="1.0.9"; sha256="071ahimmwc1bgcwli4c40h7drdg5ldhh0w1ldzxkjc78qyw8s23d"; depends=[purrr RCurl rjson stringr]; }; ecd = derive2 { name="ecd"; version="0.9.1"; sha256="0d8mf5q6n7k5qj6kxvrb3habl0qmn2rxv814kydkrz2bg0scvm1q"; depends=[digest ggplot2 gridExtra gsl moments optimx polynom RcppFaddeeva Rmpfr RSQLite stabledist xtable xts yaml zoo]; }; ecdfHT = derive2 { name="ecdfHT"; version="0.1.1"; sha256="1n3n9n86pj8c54l3xvp7knvi0ajbnjmz9pi79p7wfq92a90fqx48"; depends=[rgl]; }; - ecespa = derive2 { name="ecespa"; version="1.1-13"; sha256="0a8s923xzw6wkl9240mqsr7lpvjmi20kqn2zsbax3rrrdf4gqfkx"; depends=[spatstat spatstat_core spatstat_geom]; }; - ech = derive2 { name="ech"; version="0.1.1.2"; sha256="1mw68dkm6n6zj27rmyw33gaha1nly1srr6v1d5iib72b1gwnik8l"; depends=[assertthat curl dplyr fs geouy glue haven janitor labelled laeken purrr readxl rlang srvyr statar stringr survey tidyr]; }; + ecespa = derive2 { name="ecespa"; version="1.1-14"; sha256="07pldcwm1pi117rjl3y05x6kxl5lxs4y5aiwq0jd02mx43zy296c"; depends=[spatstat spatstat_core spatstat_geom spatstat_random]; }; echarts4r = derive2 { name="echarts4r"; version="0.4.3"; sha256="1hjjqbc6dvz6bi6lsqlvlkrmzqv1g205cd0f8k0a7lq37hcqsw7s"; depends=[broom corrplot countrycode dplyr htmltools htmlwidgets jsonlite purrr rstudioapi scales shiny]; }; echarty = derive2 { name="echarty"; version="1.4.3"; sha256="047vqwspl7x94xlj2726hyma9f61406vq7vm7hk3j94r2zk64vs1"; depends=[dplyr htmltools htmlwidgets jsonlite shiny]; }; echelon = derive2 { name="echelon"; version="0.1.0"; sha256="0dw15igx8jwgfr1f7p5pspxjiqhqmfp7shdhq8g07f4bj76irzm4"; depends=[]; }; @@ -8675,9 +8698,9 @@ in with self; { eclust = derive2 { name="eclust"; version="0.1.0"; sha256="01x327w02m357lngmgv3drni2s67sass25xk9vni1z434n8i4428"; depends=[caret data_table dynamicTreeCut magrittr pacman pander stringr WGCNA]; }; ecm = derive2 { name="ecm"; version="6.3.0"; sha256="1g8y8wks7asjyybdh4nf19w5v8kvl56n69dl0sd0mlir98i4jmr3"; depends=[car earth lmtest sandwich urca]; }; ecmwfr = derive2 { name="ecmwfr"; version="1.3.0"; sha256="0xwbcgd590vk4civa4s039avvvxsazzh9y05lw591mpm79lz19mj"; depends=[curl getPass httr keyring memoise]; }; - ecoCopula = derive2 { name="ecoCopula"; version="1.0.1"; sha256="18gkib3m4p7vi9jgzyrnznl9kcjizlh77icqrv8xjpi40ksw9m2r"; depends=[betareg doParallel foreach glasso glm2 igraph MASS mgcv mvabund ordinal plyr sna tweedie]; }; + ecoCopula = derive2 { name="ecoCopula"; version="1.0.2"; sha256="1j3n9h7rm66r8vmzzhy5mjh36gs1qnsh7rq33ymjpkkfy698gbpm"; depends=[betareg doParallel foreach glasso glm2 igraph MASS mgcv mvabund ordinal plyr sna tweedie]; }; ecochange = derive2 { name="ecochange"; version="2.5"; sha256="1lvwsi4g0b1whdcjpiri6ml90155cc5nfvxp9cnhmp9q3j9bjy1a"; depends=[curl data_table dplyr forcats gdalUtilities getPass ggplot2 httr landscapemetrics lattice R_utils raster rasterDT readr rgdal rgeos rlang rvest sf tibble viridis xml2]; }; - ecocomDP = derive2 { name="ecocomDP"; version="1.2.0"; sha256="0kfj4fn6wa0fygrdzxqm3msvwrljiazwav35gk57yp2zvdj2n34z"; depends=[data_table dplyr EML emld geosphere ggplot2 httr lubridate magrittr neonUtilities RColorBrewer rlang rmarkdown stringr tidyr uuid xml2]; }; + ecocomDP = derive2 { name="ecocomDP"; version="1.2.1"; sha256="06im6d0fx749ic6kjbxa6mk4cn98lz2q7939v627qrhwjkmmgx7a"; depends=[data_table dplyr EML emld geosphere ggplot2 httr lubridate magrittr neonUtilities RColorBrewer rlang rmarkdown stringr tidyr uuid xml2]; }; ecodist = derive2 { name="ecodist"; version="2.0.7"; sha256="1dkf2m6glry5wzwfjiyw6sac89v6g0frbagr9cyfp2hcp0y5g4n2"; depends=[]; }; ecolMod = derive2 { name="ecolMod"; version="1.2.6"; sha256="1n30faldfhpm2jkaw793vr220kgn3bmn8hxhw32rax294krmwn4v"; depends=[deSolve diagram rootSolve shape]; }; ecolTest = derive2 { name="ecolTest"; version="0.0.1"; sha256="0gkhf8gdjvkys54x0qx0h5i0lz0ksba6xdy15wzblzhym43vh9wf"; depends=[]; }; @@ -8706,7 +8729,6 @@ in with self; { ed50simulation = derive2 { name="ed50simulation"; version="0.1.1"; sha256="00fknpssrpin8bpjhf2lsjx3lbpinrmqa6jzmgy3nslkc51x0939"; depends=[boot]; }; eda4treeR = derive2 { name="eda4treeR"; version="0.3.0"; sha256="1shhajd9m9cxj9hdz34bnbs6sx20si37wh6ljw0wx5yrc9m7z9ib"; depends=[dae dplyr emmeans ggplot2 lme4 magrittr pbkrtest tidyverse]; }; edbuildmapr = derive2 { name="edbuildmapr"; version="0.3.1"; sha256="0hc5vfpilqxva88dzgp57j9cgsq64r75vhm3hhl8lhi2wwapwk1d"; depends=[dplyr magrittr sf spdep stringr tibble tidyselect tmap]; }; - edbuildr = derive2 { name="edbuildr"; version="0.3.0"; sha256="19fsk8qkxyzncn614fy6hmmxpv1dikqghs101hbzd0g0a511xk8f"; depends=[dplyr magrittr openxlsx scales stringr tidyselect]; }; edcc = derive2 { name="edcc"; version="1.0-0"; sha256="036fi6mnn9480hkb378xb5jilkfvdydjmkyw4mcc9s1lz195f62w"; depends=[spc]; }; edci = derive2 { name="edci"; version="1.1-3"; sha256="1f1ry2adfranfrrvf1gkiy58pra3z6bray4v5fgr0z9n1ybcaff0"; depends=[]; }; edcpR = derive2 { name="edcpR"; version="1.0.1"; sha256="02d33cd9pkcjrbl9qipcjzkhrc68j7bybg1hpnsngiz4wmf3bfik"; depends=[]; }; @@ -8760,9 +8782,8 @@ in with self; { eflm = derive2 { name="eflm"; version="0.3.0"; sha256="0pl1z0yy257x4yhy2m7w6xkicr2a5b37rdsrf7a5ramk7z2nvs4m"; depends=[tibble]; }; efreadr = derive2 { name="efreadr"; version="0.2.2"; sha256="1h27by1m451wrnw017005avs5yj3fjzrm2lq5153aqm1mbbxxwvs"; depends=[dplyr ensurer magrittr readr]; }; ega = derive2 { name="ega"; version="2.0.0"; sha256="04kwh24aap22yclmcrix3vi553qb30hd43mgfzpdl0cw3ibrh7xg"; depends=[ggplot2 mgcv]; }; - egcm = derive2 { name="egcm"; version="1.0.12"; sha256="0nssf5six1j7z6fss7478zdbsfx60myzw833m7nsnaf1r8n4ixaf"; depends=[ggplot2 MASS pracma quantmod tseries urca xts zoo]; }; egg = derive2 { name="egg"; version="0.4.5"; sha256="1fy7srpiavfn8kyrr1m84an7acgwi6ydzrg71m3b0vk7y9ybmj0m"; depends=[ggplot2 gridExtra gtable]; }; - eggCounts = derive2 { name="eggCounts"; version="2.3-1"; sha256="0pm96j7sacy56kvif6950jdxqqzn8y3alnkd4j4pr2a6a3mszfzj"; depends=[BH boot coda lattice numbers Rcpp RcppEigen RcppParallel rootSolve rstan rstantools StanHeaders]; }; + eggCounts = derive2 { name="eggCounts"; version="2.3-2"; sha256="1hb7a78db97xz5hm311d60n2kg1wdlrf57vg4ixamqihyrcs5r4v"; depends=[BH boot coda lattice numbers Rcpp RcppEigen RcppParallel rootSolve rstan rstantools StanHeaders]; }; egor = derive2 { name="egor"; version="1.22.1"; sha256="15nl5lz5n3qil84fsfq966q6rks7wgx1dc2bfcgiaavff4n22acz"; depends=[dplyr purrr rlang srvyr tibble tidygraph tidyr]; }; eha = derive2 { name="eha"; version="2.9.0"; sha256="069nxf7mfx2b2r1961jf0mcgxbc132ljykr17p3k8pax39m2p78n"; depends=[survival]; }; ehaGoF = derive2 { name="ehaGoF"; version="0.1.1"; sha256="15hpzj3ridl6w3pd5z86d88cc88jw09qpqhsdwkar4dby8lgxhi0"; depends=[]; }; @@ -8785,6 +8806,7 @@ in with self; { eive = derive2 { name="eive"; version="2.3"; sha256="073hwx944db7zxq6yib6yvciaic11k49zl1iqphippcd5ygkad80"; depends=[Rcpp]; }; eivtools = derive2 { name="eivtools"; version="0.1-8"; sha256="0ynmrql6dv10m7cwba5mzwlbvp6ab53nzqqvk3ihwyiqzmnnmpk4"; depends=[R2jags]; }; eixport = derive2 { name="eixport"; version="0.5.0"; sha256="1k5p9v5jmw5cs31sn69fjdfhh5yyzk85828aljsmsyx1ycibnwmg"; depends=[cptcity data_table ncdf4 raster sf sp]; }; + eks = derive2 { name="eks"; version="1.0.0"; sha256="1r9f5j2drsc8ladhbhsls29wqsmm4wprfmapas0ba3h2anw75scd"; depends=[dplyr FNN ggplot2 isoband ks mapsf sf]; }; elaborator = derive2 { name="elaborator"; version="1.1"; sha256="1kq3qqqywpzrk1ichsljvfijhsybmj7s0scmswmwi2crqi67gzp8"; depends=[bsplus dendextend dplyr forcats haven purrr RColorBrewer reshape2 rlang seriation shape shiny shinydashboard shinyWidgets tidyr]; }; elasdics = derive2 { name="elasdics"; version="0.1.5"; sha256="1q6l32v3y5l1n9g4si6swc3ck1nndn4xsj0hw1q9b4x5dlxvfziv"; depends=[numDeriv]; }; elasso = derive2 { name="elasso"; version="1.1"; sha256="0nz3vw803dvk4s45zc9swyrkjwna94z84dn4vfj3j17h74a0cij2"; depends=[glmnet SiZer]; }; @@ -8802,6 +8824,7 @@ in with self; { elevatr = derive2 { name="elevatr"; version="0.4.2"; sha256="1a5j7hb9fsy9ybrdlywbm552kb2hj6ch1m8kvi2hybm99yw33n81"; depends=[furrr future httr jsonlite progressr purrr raster sf slippymath sp units]; }; elexr = derive2 { name="elexr"; version="1.0"; sha256="1xmrzlp55z6k3psdg4a3x3rsilvq3k37v9r7ydfn80ahvqjz0fqh"; depends=[]; }; elfDistr = derive2 { name="elfDistr"; version="1.0.0"; sha256="11h91mwiw2pr0c8zvyzqql275falpiajv784n2rd5xs9azprqdd0"; depends=[Rcpp]; }; + elfgen = derive2 { name="elfgen"; version="2.2.3"; sha256="00rkhw4h7i1clnfmg6dhc8gz9wwmaaywnc9wrs28h0b8a8lls9nh"; depends=[ggplot2 quantreg RJSONIO scales sqldf stringr testit]; }; elhmc = derive2 { name="elhmc"; version="1.1.0"; sha256="0ngva7rnfj75fq93ycsv929m9ykijp48r7cvd6sfmi0sqsjinax5"; depends=[emplik MASS plyr]; }; elisr = derive2 { name="elisr"; version="0.1.1"; sha256="1kz07fyffaqgda9rqidxzxz0bxzhyb8pyxpzqsvjsn1i9w98cb5k"; depends=[]; }; elitism = derive2 { name="elitism"; version="1.0.4"; sha256="0n5g1nd1dd5wc76qa2va1lyxahg9p062l8wdqzq43ah6943pjzgr"; depends=[MASS]; }; @@ -8815,17 +8838,17 @@ in with self; { elrm = derive2 { name="elrm"; version="1.2.5"; sha256="1kqwr0nfmnb729h01p14a24kd9scsw7j7qj133kpg0ppcfsnygld"; depends=[coda]; }; elsa = derive2 { name="elsa"; version="1.1-28"; sha256="01sj2a4yhv5m6qj6ih26zw4yzd8s27lll7yp0yysjjrwz79a0fbq"; depends=[raster sp]; }; eltr = derive2 { name="eltr"; version="0.1.0"; sha256="0f4sy2hhsbghasl5xcnqlgxqhb503pl73c5vdkgpcm73smrqbpbv"; depends=[data_table]; }; + emIRT = derive2 { name="emIRT"; version="0.0.13"; sha256="1z6yd9m6vggbp42qms2sg0rbxjpg15x9m8gkdz1p3q4aqrc2ncj0"; depends=[pscl Rcpp RcppArmadillo]; }; emayili = derive2 { name="emayili"; version="0.7.5"; sha256="1kkcnj7knfiq1pr0yq2sfldvrxjw5j9xg62crsiiwsj0ilnzw6bk"; depends=[base64enc commonmark curl digest dplyr glue htmltools httr logger magrittr mime purrr rmarkdown rvest stringi stringr tidyr urltools xfun xml2]; }; emba = derive2 { name="emba"; version="0.1.8"; sha256="1bzp1cplr977w87bm0pvabvgai91a3j51pfjn4lc1ncjbr2v6wl0"; depends=[Ckmeans_1d_dp dplyr igraph purrr readr rje stringr tibble tidyr tidyselect usefun visNetwork]; }; embed = derive2 { name="embed"; version="0.1.5"; sha256="029ysbfvgb1sb14xs0p6dswcxbpgnhvshhs2hcqbrizysb7c7bj2"; depends=[dplyr generics keras lifecycle purrr recipes rlang rsample tensorflow tibble tidyr uwot withr]; }; - embryogrowth = derive2 { name="embryogrowth"; version="8.2"; sha256="1dq3vz70ai63mfmhfs9mavmx3kqsbdy2m7pfv74lk3gj42rzdbvx"; depends=[deSolve HelpersMG numDeriv optimx]; }; + embryogrowth = derive2 { name="embryogrowth"; version="8.3-4"; sha256="0f2ks472c9nr4k9vr2ig1jr2syklm8yahhlchs8b6af10dz7sf0n"; depends=[deSolve HelpersMG numDeriv optimx]; }; emdbook = derive2 { name="emdbook"; version="1.3.12"; sha256="0ls3zxxlwmdv7zn1v9i1y9zc2sn0hbgmyjvsj7zn3ajsw7wwlih6"; depends=[bbmle coda lattice MASS plyr]; }; emdi = derive2 { name="emdi"; version="2.1.1"; sha256="1imw4zlx338yfp4kb6ax4z1ni5f6q5mlcvfx7xm05j0nqigjphv9"; depends=[boot formula_tools ggplot2 gridExtra HLMdiag MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 saeRobust spdep stringr]; }; - emdist = derive2 { name="emdist"; version="0.3-1"; sha256="1z14pb9z9nkd0f2c8pln4hzkfqa9dk9n3vg8czc8jiv0ndnqi7rq"; depends=[]; }; + emdist = derive2 { name="emdist"; version="0.3-2"; sha256="05mv6xhm15b0mq9kzyiblkb14bdqmjrwl64ghdk66il0w8i7p6nh"; depends=[]; }; emg = derive2 { name="emg"; version="1.0.9"; sha256="04sm05xnjns7wcvpk35ywkxy6g0mm84r060mkmzh64wq58c2q06l"; depends=[moments]; }; emhawkes = derive2 { name="emhawkes"; version="0.9.5"; sha256="0b6kjwx2lsz5rj8819n71nvvchjpys90ns5n6gcgfwn5afzfdvql"; depends=[maxLik]; }; emld = derive2 { name="emld"; version="0.5.1"; sha256="0cvnfvzskvpcqzs6fwrpjcqrc6yrfciliy9jj0c9h4iyag0g0b9b"; depends=[jsonld jsonlite xml2 yaml]; }; - emma = derive2 { name="emma"; version="0.1-0"; sha256="0psd8lrbcqla8mkhp0wlassaaimgwlmqy5yv2wwcq59mc5k1v27f"; depends=[clusterSim earth]; }; emme2 = derive2 { name="emme2"; version="0.9"; sha256="035s4h95ychqb14wib0dqbg4sjy9q01fsryr0ri25g1hsi5f8lpm"; depends=[reshape]; }; emmeans = derive2 { name="emmeans"; version="1.7.2"; sha256="1g112yvqvxi83x128hwz4qpifwihlm0y5szg82cdsx3c9cm1rrfk"; depends=[estimability mvtnorm numDeriv xtable]; }; emoa = derive2 { name="emoa"; version="0.5-0.1"; sha256="0rkr4d4fyqxmsrlbzar27z97qkw4cl1dkvfnhbdwpgg9fi1cixmz"; depends=[]; }; @@ -8867,7 +8890,7 @@ in with self; { ensr = derive2 { name="ensr"; version="0.1.0"; sha256="18b81iswvby7k5akbfdyc6a8j1621d4d35hxmgjip5kyvf5cb3p8"; depends=[data_table ggplot2 glmnet]; }; ensurer = derive2 { name="ensurer"; version="1.1"; sha256="1gbbni73ayzcmzhxb88pz6xx418lqjbp37sdkggbrxcyhsxpdkid"; depends=[]; }; entcn = derive2 { name="entcn"; version="1.0.0"; sha256="0zwhhjrc24d3hr9494p9ayxlkd0g6jml9raxwv59mpvpprrasdws"; depends=[RYoudaoTranslate stringr]; }; - entropart = derive2 { name="entropart"; version="1.6-8"; sha256="1z6v7gszlmjppp9q69k0awjdkjp0xj2b57g1m52klhcvrf8cp8ad"; depends=[ade4 ape EntropyEstimation ggplot2 ggpubr reshape2 SPECIES tibble vegan]; }; + entropart = derive2 { name="entropart"; version="1.6-9"; sha256="0xwsascm9m2fxbnb0msv20kbg8xjrn17fggsl7ws8pdq8xg912c8"; depends=[ape EntropyEstimation ggplot2 ggpubr reshape2 tibble vegan]; }; entropy = derive2 { name="entropy"; version="1.3.1"; sha256="1f0j8jsn6pzf4gi5g0akixx6x5vc69ci5f4m2vnwp40frvsqjnkg"; depends=[]; }; entrymodels = derive2 { name="entrymodels"; version="0.2.1"; sha256="0fz7jzax12pzw47iry4amgg9z4z3z94kig6r5dhcqa84kq02294v"; depends=[dplyr magrittr readr]; }; envDocument = derive2 { name="envDocument"; version="2.4.1"; sha256="074m7adnasvys28kjdgj9071fi90vsl4yv5zvpxik4crlx098dlw"; depends=[]; }; @@ -8882,6 +8905,7 @@ in with self; { envlpaster = derive2 { name="envlpaster"; version="0.1-2"; sha256="11a5n40k1ln5gxxvwq1vh4dhmhifhlm89hkhf36qnhj4bjh3v3y0"; depends=[aster aster2 caTools MASS]; }; envnames = derive2 { name="envnames"; version="0.4.1"; sha256="1fkbid2x60m63dnrxrdq7im49spn8m70g1gd8nqjq3xlv642ianm"; depends=[]; }; envoutliers = derive2 { name="envoutliers"; version="1.1.0"; sha256="1wgrrkkpkmf300qb56mq6nxigwnpq551sjxlk05lk3ckawx66srf"; depends=[car changepoint ecp ismev lokern MASS robustbase]; }; + envstat = derive2 { name="envstat"; version="0.0.2"; sha256="1lyv8dh3h4g4zcndv9b5m7zp0g22hznzshy4z55i058w82079c7d"; depends=[cli httr2 rstudioapi yaml]; }; eoR = derive2 { name="eoR"; version="0.4.0"; sha256="0vn4s4af94n9h6x7z14qwpz94rgsd5m3mv55wva7x3h99ryhm83s"; depends=[data_table]; }; eoffice = derive2 { name="eoffice"; version="0.2.1"; sha256="03g8r3xnsnnlyj7y07jm3qjhlv3pkf8v2lxpqzd24ncncxmbcxmi"; depends=[broom devEMF dplyr flextable ggplot2 ggplotify htmlwidgets magick magrittr officer plotly R_devices rvg]; }; epade = derive2 { name="epade"; version="0.3.8"; sha256="1alvsifc6i71ilm1xxs1d7sqlapb48bqd6z2n4wi6pqcjvwp7bif"; depends=[plotrix]; }; @@ -8892,11 +8916,12 @@ in with self; { epcc = derive2 { name="epcc"; version="1.4.7"; sha256="0j4cb17gvwsaacmhvm8qp5chr384kl7gj6089gjrc2hqi6kjr0rx"; depends=[cowplot deSolve formattable ggplot2 httr nls2 proto raster readxl rgdal rlang sp]; }; eph = derive2 { name="eph"; version="0.4.0"; sha256="0yznfhsp6sgymq02m4g477pnqlmmbdvwv32sidaa2giaf3nr4izj"; depends=[assertthat attempt curl dplyr expss glue htmltools janitor leaflet magrittr purrr questionr readr readxl rlang rvest stringr tibble tidyr tidyverse xml2 zoo]; }; epiDisplay = derive2 { name="epiDisplay"; version="3.5.0.1"; sha256="08ym6hcbmajzr4rasdb35fxk79vgpzfc16rmcm34f7f3zzz09dyl"; depends=[foreign MASS nnet survival]; }; - epiR = derive2 { name="epiR"; version="2.0.41"; sha256="14al2v0pn2m581smz2lia79hp37cjy1z4j428sl5nk18lcdgi9gh"; depends=[BiasedUrn lubridate pander sf survival]; }; + epiR = derive2 { name="epiR"; version="2.0.43"; sha256="0kicviwj3kvak1n58snmr9vz6ir8n624pzv5sdk9cc7kambydldi"; depends=[BiasedUrn lubridate pander sf survival zoo]; }; epibasix = derive2 { name="epibasix"; version="1.5"; sha256="0ivr51x37cbdryli9b4p4iq9v2c90zwmywrwdmg7ryq5vprvvbp0"; depends=[]; }; epicontacts = derive2 { name="epicontacts"; version="1.1.2"; sha256="07vnvfqm9vghmrjy3g1x3mz6qsf09qi04xq2nm9n4cgxjmbr0gia"; depends=[colorspace dplyr igraph threejs visNetwork]; }; epidata = derive2 { name="epidata"; version="0.4.0"; sha256="0v3s1vrf2iqh03rkkwrlz6mhpbsbjxkayrqdx04vrnja4i9ljshk"; depends=[dplyr httr jsonlite purrr readr rvest stringi tidyr tinytest xml2]; }; epidemia = derive2 { name="epidemia"; version="1.0.0"; sha256="1lfbibcpm58a05wrikwfzxkfqxw6yk41b1q07wpchxpz1lfv2v5y"; depends=[bayesplot BH dplyr ggplot2 hrbrthemes lme4 magrittr Matrix Rcpp RcppEigen Rdpack rlang rstan rstanarm rstantools scales StanHeaders tidyr zoo]; }; + epidm = derive2 { name="epidm"; version="1.0.2"; sha256="0ckm5rg4729f27gkg5zynv52gi6z8v45575paf9pvrzpsblsyhw5"; depends=[data_table DBI odbc phonics purrr readr stringi stringr]; }; epifitter = derive2 { name="epifitter"; version="0.3.0"; sha256="104hl3b3951psi023hv95486ygcv9ilmqkzw96yygym7rhkaww9m"; depends=[DescTools deSolve dplyr ggplot2 knitr magrittr minpack_lm tibble tidyr]; }; epiflows = derive2 { name="epiflows"; version="0.2.0"; sha256="09ri1p73ih0i08irc06ff169hi5vcl8bdi63b056kzxgmv17yqkp"; depends=[epicontacts geosphere ggmap ggplot2 htmltools htmlwidgets leaflet sp tibble visNetwork]; }; epigraphdb = derive2 { name="epigraphdb"; version="0.2.3"; sha256="11ja2r024a4sfk6xjhwn2mj4fz2msf6jx85w3cxr2hvp9sl3zgc9"; depends=[glue httr jsonlite magrittr purrr tibble]; }; @@ -8926,7 +8951,6 @@ in with self; { epxToR = derive2 { name="epxToR"; version="0.4-1"; sha256="00m64ham9fd9dsw37ic2m62fy4pvmwfwmjx8cg6n4rwbgq9q49sg"; depends=[httr XML]; }; eq5d = derive2 { name="eq5d"; version="0.10.1"; sha256="00474dmjpifl7xrm2ln5znghyy7sm1r16dqfk49vafnd4wa89wm1"; depends=[]; }; eqs2lavaan = derive2 { name="eqs2lavaan"; version="3.0"; sha256="1lj6jwkfd84h9ldb6l74lrx2pnsl1c0d7mnrcrjkska87djb2nzd"; depends=[lavaan stringr]; }; - eqtl = derive2 { name="eqtl"; version="1.1-7"; sha256="0xfr8344irhzyxs9flnqn4avk3iv1scqhzac5c2ppmzqhb398azr"; depends=[qtl]; }; equalCovs = derive2 { name="equalCovs"; version="1.0"; sha256="18w7panyd6mhdr3x1iz9fkrw7min22rishs4xhkxgxs3nnyglkrn"; depends=[]; }; equaltestMI = derive2 { name="equaltestMI"; version="0.6.1"; sha256="09wh4907vf54z3g2a1i1j4m5vkaz97jp3qyrmxbg0bbbq0c68ffg"; depends=[lavaan]; }; equatags = derive2 { name="equatags"; version="0.1.1"; sha256="0rw9vipqk0gdkd73b04lw13fs5pjdvjqnn17n7xg1z0fk11k4qqw"; depends=[locatexec xml2 xslt]; }; @@ -8937,7 +8961,7 @@ in with self; { equivUMP = derive2 { name="equivUMP"; version="0.1.1"; sha256="05ihbr6dd9qv89ll90ynk4g3d3xy2w5q0m696djfa63f1x92c01w"; depends=[]; }; equivalence = derive2 { name="equivalence"; version="0.7.2"; sha256="170l5gnk0dkjkfsx7qyrw56ircwsjzz9cvhakgyrqh7bj5734i79"; depends=[boot lattice PairedData]; }; equivalenceTest = derive2 { name="equivalenceTest"; version="0.0.1.1"; sha256="1lr1qc4mv8f9hwqidj1rwhxqm1fb8cf1hnb1k32xpdqwzsxbfa47"; depends=[cubature polynom Rdpack rootSolve]; }; - era = derive2 { name="era"; version="0.3.1"; sha256="1x633yz49sfm27gby5sa6nbwx0mc1h606hxh5yvrjqnjlkk7xpgr"; depends=[magrittr pillar rlang vctrs]; }; + era = derive2 { name="era"; version="0.4.0"; sha256="1r726zcaayg6chh1466z9q4y3vd1z5hbz3kvqbfp6dqj7dx8qhgw"; depends=[pillar rlang vctrs]; }; erah = derive2 { name="erah"; version="1.1.2"; sha256="0dyjb2ja5199z8is11in11a95l2dbhaa2qj42pikh0ydk47qhd6v"; depends=[igraph ncdf4 nnls quantreg Rcpp signal XML]; }; erboost = derive2 { name="erboost"; version="1.3"; sha256="09hlpn6mqsmxfrrf7j3iy8ibb2lc4aw7rxy21g3pgqdmd9sbprim"; depends=[lattice]; }; ercv = derive2 { name="ercv"; version="1.0.1"; sha256="0rs4yhm9sjnqkrgqqy6b8wj9fgk910hxc8d7zi4qwql0v1gid27l"; depends=[]; }; @@ -8981,7 +9005,7 @@ in with self; { essHist = derive2 { name="essHist"; version="1.2.2"; sha256="0rvlxfcl42h4pjqf37mx7bc4k21iwvnys6l5rf2jsl7yk1b9hmbn"; depends=[Rcpp]; }; essentials = derive2 { name="essentials"; version="0.1.0"; sha256="163wv4szfanbpiw5f6lhw1dnns5prql43iz27zgcp5z2rsxlb894"; depends=[]; }; essurvey = derive2 { name="essurvey"; version="1.0.8"; sha256="1b78am4vnyg3k2hjjkjyhnjgm6rsmjwvqys030qybkgfplsbgra3"; depends=[haven httr rvest tibble xml2]; }; - estadistica = derive2 { name="estadistica"; version="0.2.0"; sha256="1f7bw1clprkrcxxcp0rb1v2bdhz0ynk8f2850vv67sydnqlqal5k"; depends=[data_table dplyr forecast ggplot2 gridExtra knitr magrittr plotly rio shiny shinydashboard tidyr tidyverse]; }; + estadistica = derive2 { name="estadistica"; version="0.2.1"; sha256="0r0hchsdfraiafjldkd3sy6ndx7qm6p5c04gnk6rbhbbfr8xhyhy"; depends=[data_table dplyr forecast ggplot2 gridExtra knitr magrittr plotly rio shiny shinydashboard tidyr tidyverse]; }; estatapi = derive2 { name="estatapi"; version="0.4.0"; sha256="0wp5w9w0b832fnl7kchjqmychnf5896q50grw8hwdc1km14dfzkg"; depends=[dplyr httr purrr readr rlang tibble]; }; estimability = derive2 { name="estimability"; version="1.3"; sha256="0cifdaa71spkcxl4db4z884jrya865sg3dhcv4isd8fnzg2pjcd3"; depends=[]; }; estimatr = derive2 { name="estimatr"; version="0.30.6"; sha256="03y9hcdj5y2bhz7k8sh5mmv619zpbqh4gyv82sf9s57infhc3zph"; depends=[Formula generics Rcpp RcppEigen rlang]; }; @@ -9008,14 +9032,14 @@ in with self; { eurocordexr = derive2 { name="eurocordexr"; version="0.2.2"; sha256="081p9qs09xif2cck0gmmqgzaly1r2p77kla2nhcvjgxgdylbsdkd"; depends=[data_table fs lubridate magrittr ncdf4 ncdf4_helpers PCICt]; }; europepmc = derive2 { name="europepmc"; version="0.4.1"; sha256="16japbndid34shqg8n0bmjrxn84xmhrylvz832zclcllm6i93fn1"; depends=[dplyr httr jsonlite plyr progress purrr rlang tibble tidyr urltools xml2]; }; europop = derive2 { name="europop"; version="0.3.1"; sha256="1ym257bxr4a0dmln1j8x3pf87wrryzgqyzhvk61whc6n2bj62x1s"; depends=[]; }; - eurostat = derive2 { name="eurostat"; version="3.7.5"; sha256="1398jmg4z9lnlm7hsr492ybj958gnn4hk5fmy7dillfvimx9x2gy"; depends=[broom classInt countrycode curl dplyr httr jsonlite lubridate magrittr RColorBrewer readr RefManageR sf stringi stringr tibble tidyr]; }; + eurostat = derive2 { name="eurostat"; version="3.7.10"; sha256="05132pid3gjp9qgksvz087vy323dp1s31w46q7a9553kxsqkgkw5"; depends=[broom classInt countrycode curl dplyr httr jsonlite lubridate rappdirs readr RefManageR regions stringi stringr tibble tidyr]; }; eva = derive2 { name="eva"; version="0.2.6"; sha256="1b5hrwgdbw19c63ywhkvxlz3843c0mgvsxlmab6zv6r2lrrdkf62"; depends=[EnvStats Matrix]; }; evabic = derive2 { name="evabic"; version="0.0.3"; sha256="0wd5wjsj9gbvbncaa97g1sp0211aq3nn5jc91lvhka6h34wxkcgc"; depends=[]; }; evalITR = derive2 { name="evalITR"; version="0.2.2"; sha256="0xdf3jyrsnf2jb28fwf8ydlid1n74ka7mx98jp6fidzcinw4mzmj"; depends=[]; }; - evaluate = derive2 { name="evaluate"; version="0.14"; sha256="0a2y7j534gbgixkwj9r1z76l2vssw4g1hznzbpclc076wkdqpj58"; depends=[]; }; + evaluate = derive2 { name="evaluate"; version="0.15"; sha256="0pbwj02y2j7r0msa7747ih1p32xm9bcyr8fa7bysfslb199ywnl8"; depends=[]; }; evclass = derive2 { name="evclass"; version="1.1.1"; sha256="00lbhcgswpv0amz0mb93kx9p91sf0d7zvxfw9i8x1zpmpfd6nhcj"; depends=[FNN]; }; evclust = derive2 { name="evclust"; version="2.0.2"; sha256="107x61vmkfmy3bmcaywz96qj35bmz4nydd0zn9amm2xnbb37lg31"; depends=[FNN limSolve Matrix mclust plyr quadprog R_utils]; }; - evd = derive2 { name="evd"; version="2.3-3"; sha256="1d2r8ppblxrq6s60pf0gv4rp8ja58j8lbpax8a996ais1hpfzi9g"; depends=[]; }; + evd = derive2 { name="evd"; version="2.3-4"; sha256="1vkg50kha3jskrsf80ir5nv9gnpcgbiw9ls9jmvcwz8wca5ml511"; depends=[]; }; evdbayes = derive2 { name="evdbayes"; version="1.1-1"; sha256="0lfjfkvswnw3mqcjsamxnl8hpvz08rba05xcg0r47h5vkgpw5lgd"; depends=[]; }; event = derive2 { name="event"; version="1.1.1"; sha256="0w3v8j61y7vr0cjl8a1rkvi4pyjlfhmzzn1n4dgkivac4iafzqjj"; depends=[rmutil]; }; eventInterval = derive2 { name="eventInterval"; version="1.3"; sha256="0nybzy2mpmazcvz06mkv7l9741mjm3i2q2sindq0777vb2k4504v"; depends=[MASS]; }; @@ -9028,7 +9052,7 @@ in with self; { evian = derive2 { name="evian"; version="2.1.0"; sha256="1slnzq55gg3p16fs22v69mafiggiy5f70sj8fh65lc0hphybh6w2"; depends=[doParallel foreach ProfileLikelihood sandwich]; }; evidence = derive2 { name="evidence"; version="0.8.10"; sha256="02kqk95kx4nv13fg6z55a5rv6sq6lv8azg0jjxbkg1j6hg15p7ai"; depends=[LaplacesDemon lattice LearnBayes loo rstan rstanarm]; }; evidenceFactors = derive2 { name="evidenceFactors"; version="1.8"; sha256="0g9w1q8ir6qmvk5vvbpipiyias7nj74ks2h94ja7al8sz68gralx"; depends=[sensitivitymv]; }; - evident = derive2 { name="evident"; version="1.0.2"; sha256="1dniqb6k28c7fisav7yvi94qfl582hssf78qxxmpj4yp58jw1i6z"; depends=[DOS2 MASS sensitivity2x2xk sensitivitymult sensitivitymv senstrat]; }; + evident = derive2 { name="evident"; version="1.0.4"; sha256="1nffcfkny79d3f776p8j4g71cc3n991v56jwjyrg3vkgs05w13cn"; depends=[DOS2 MASS sensitivity2x2xk sensitivitymult sensitivitymv senstrat]; }; evir = derive2 { name="evir"; version="1.7-4"; sha256="1h7a7z7v5k33y5hsdfczsri3vpbwspfgazhv4saknv2h11rgfpki"; depends=[]; }; evmix = derive2 { name="evmix"; version="2.12"; sha256="02rabc9snci00s1x7h0svfr66lmw1wjcdg0149wc52mnccsdaivf"; depends=[gsl MASS SparseM]; }; evobiR = derive2 { name="evobiR"; version="1.1"; sha256="0502xj1gv2g943vfqyllz4sr5z4mixf5vqlqi2v96mymnv9iwsr8"; depends=[ape geiger phytools seqinr shiny]; }; @@ -9052,7 +9076,7 @@ in with self; { exams2sakai = derive2 { name="exams2sakai"; version="0.3"; sha256="0lgnk2g4q0vbkvcrhb815lah24rhaknnmsbhhkgbdkl0c5mx1yjg"; depends=[exams glue stringi stringr xml2]; }; exceedProb = derive2 { name="exceedProb"; version="0.0.1"; sha256="02pb8b0rxygbv6501rcr2hb0bhz1r78k5znav161kk25fb9bxs5v"; depends=[BH Rcpp]; }; excelR = derive2 { name="excelR"; version="0.4.0"; sha256="1pb4sy54zjv5vrh7gjjv7qlpab74km6mfsmfyl0yhmr0jx01hrw0"; depends=[htmlwidgets jsonlite]; }; - exceldata = derive2 { name="exceldata"; version="0.1.0"; sha256="0jx3ar3kg3aqkkzqxchqpg57py0dq71yrh2i0b280ahqqafan1d0"; depends=[dplyr ggplot2 lubridate readxl scales]; }; + exceldata = derive2 { name="exceldata"; version="0.1.1"; sha256="03s284pvbvhxzmqbdx00ic4a2xyg3y3hzr1ks913bxacz46g157d"; depends=[dplyr ggplot2 lubridate readxl scales]; }; excelstrippr = derive2 { name="excelstrippr"; version="0.1.2"; sha256="1ly76qja9b5l3xwfhigm1apd114y2iq5wdl27sd2h1y80n8xxf2v"; depends=[dplyr readxl tidyr]; }; excerptr = derive2 { name="excerptr"; version="2.0.1"; sha256="0lmcxlpxvldxwqxrprqq39hk5f770ii1x38jm2jbs4n75smp4m21"; depends=[checkmate reticulate]; }; excessmort = derive2 { name="excessmort"; version="0.6.1"; sha256="0qkj30csq96qg7r8vdl79n31dhz69vh49qz4gpb3r2fr32pn497k"; depends=[dplyr ggplot2 lubridate rlang scales tidyr]; }; @@ -9071,7 +9095,7 @@ in with self; { expectreg = derive2 { name="expectreg"; version="0.51"; sha256="0ab9xkfa3wkhrzj7lj6jgdcxzgp1xjsk6ah71f6qd11bafq7j720"; depends=[BayesX colorspace fields Matrix mboost quadprog Rcpp RcppEigen]; }; experDesign = derive2 { name="experDesign"; version="0.1.0"; sha256="1v2j3jyxyzwkzc3y5n6pzd31yigkfwcmf12df3104m3kn86iq81r"; depends=[]; }; experiment = derive2 { name="experiment"; version="1.2.0"; sha256="0f8h4pj2y7cd2s1q44q4mrg9cirnpz0bkn4xm04hz1rpjxb4xlv1"; depends=[boot MASS]; }; - expert = derive2 { name="expert"; version="1.0-0"; sha256="0y9vcigvzhymalpv31b9nvmr86z1dz7x29yj838vks0dsv23rgrf"; depends=[]; }; + experimentr = derive2 { name="experimentr"; version="0.1.0"; sha256="0ji2031r108rzna00zhsh70kfcnhcscz0an0jv0vvj00hrakl0yr"; depends=[]; }; expint = derive2 { name="expint"; version="0.1-6"; sha256="0iai25cglcdnf44d2d1fz1xpw4q600my4zq4493fk4cs5673mlf7"; depends=[]; }; expirest = derive2 { name="expirest"; version="0.1.2"; sha256="1fzgs8pniypgd1ws5dkiylgjdwgxwyrblcnvirmwfzcrgyvbmwfs"; depends=[ggplot2]; }; explor = derive2 { name="explor"; version="0.3.9"; sha256="0sfpw9lgpr9hyn93jwxhijbfqnj466wc5ilszki2r7ziik3nb79i"; depends=[dplyr DT formatR ggplot2 highr RColorBrewer scatterD3 shiny tidyr]; }; @@ -9159,12 +9183,12 @@ in with self; { fUnitRoots = derive2 { name="fUnitRoots"; version="3042.79"; sha256="1hsv47dm0hx3s04g9h0bjdgi79zbfihnfxxdc2jskqp94yl7azsy"; depends=[fBasics timeDate timeSeries urca]; }; fabCI = derive2 { name="fabCI"; version="0.2"; sha256="1vga322xpqzsh40n74v8vqiq8zbzrabvg58mp50bcx2ml0dikgnm"; depends=[MASS]; }; fabMix = derive2 { name="fabMix"; version="5.0"; sha256="1gii3mdii9nw423xxn9mhv1pjbw967wdarn828w04zm9dkdcwm48"; depends=[coda corrplot doParallel foreach ggplot2 label_switching MASS mclust mvtnorm RColorBrewer Rcpp RcppArmadillo]; }; - fabisearch = derive2 { name="fabisearch"; version="0.0.3.9"; sha256="0nzv2wkv1l4r2pqq6j2y16lj61djp6bjydsk4xvxlhdnifx5cmhm"; depends=[doParallel doRNG foreach NMF pkgmaker reshape2 rgl]; }; + fabisearch = derive2 { name="fabisearch"; version="0.0.4.3"; sha256="08wb7r6mzcxfb87nwyicklj43j6vrvdbws7gawxrqfb1x4xi6q30"; depends=[doParallel doRNG foreach NMF pkgmaker reshape2 rgl]; }; fable = derive2 { name="fable"; version="0.3.1"; sha256="185l3gd83nys11k389ha2ssdm9rkw9aackmz2cd2mvlym72rsnq7"; depends=[distributional dplyr fabletools Rcpp rlang tibble tidyr tsibble]; }; fable_ata = derive2 { name="fable.ata"; version="0.0.3"; sha256="0rjy5kj10sw2i9ghrsz67l40j7niw9mxm14kzg6prnc34200ki0n"; depends=[ATAforecasting distributional dplyr fabletools lubridate rlang tibble tsbox tsibble]; }; fable_prophet = derive2 { name="fable.prophet"; version="0.1.0"; sha256="12y2k05plg6d6lgqk6617q6z5m6xz33zdsjh56k86h230qqw68rp"; depends=[distributional dplyr fabletools lubridate prophet Rcpp rlang tsibble]; }; fabletools = derive2 { name="fabletools"; version="0.3.2"; sha256="1appg3pzw6b08nxh0p1ldbvv1j091v0kcygm808nf04v9axp5f95"; depends=[distributional dplyr generics ggplot2 lifecycle progressr R6 rlang tibble tidyr tidyselect tsibble vctrs]; }; - fabricatr = derive2 { name="fabricatr"; version="0.14.0"; sha256="1smy9c34y47xdfmkgm90xyxagnj9qsgxg70mf75z1006m4npbdg8"; depends=[rlang]; }; + fabricatr = derive2 { name="fabricatr"; version="0.16.0"; sha256="0f9p90klcv7k6ajcwqrwzzgxna3ciwpms4vcsxnkb3vy2skhbrzz"; depends=[rlang]; }; fabricerin = derive2 { name="fabricerin"; version="0.1.2"; sha256="0ynvnxzxx1iybyy5pvwfsj5y9jjixyrpji9vcl5fq5mjnpg8mpqk"; depends=[glue htmltools]; }; face = derive2 { name="face"; version="0.1-6"; sha256="0lvagpn6sa22zj4phz1vi1ccd8xasrgcq6ypwj7qx4bf1xjc95b1"; depends=[Matrix matrixcalc mgcv]; }; facerec = derive2 { name="facerec"; version="0.1.0"; sha256="1dipcnxjz6yd34w0jrrvj5p0pwdgz1l5m9zvri7mflnz7g34gmaj"; depends=[dplyr httr jsonlite knitr magrittr rlang snakecase stringr]; }; @@ -9174,7 +9198,6 @@ in with self; { factor_switching = derive2 { name="factor.switching"; version="1.2"; sha256="1va8xah0r7622svybv9r2v0s9wbl15p4lkrbqmaf5p5izijg32xs"; depends=[coda HDInterval lpSolve MCMCpack]; }; factorEx = derive2 { name="factorEx"; version="1.0.1"; sha256="03dgxxykxgq63cgan5gy5vz4hnwqmg48z2wdv8f69mk9452mg9m2"; depends=[arm doParallel estimatr foreach genlasso igraph mvtnorm pbapply pbmcapply prodlim sandwich stringr]; }; factorMerger = derive2 { name="factorMerger"; version="0.4.0"; sha256="127k5h1gbbnjr6gxgck2n9glvvwkd69xq7n6gzmrq8gszk8v1x5m"; depends=[agricolae colorRamps dplyr forcats formula_tools ggplot2 ggpubr knitr magrittr MASS mvtnorm proxy reshape2 scales survival]; }; - factorQR = derive2 { name="factorQR"; version="0.1-4"; sha256="1vl01fm5qfyhnqbl5y86vkr50b8cv07vzlqs3v6smqaqq6yp4lv4"; depends=[lattice]; }; factorial2x2 = derive2 { name="factorial2x2"; version="0.2.0"; sha256="045887hwknwm92wlrp0jlvxj5aal50vpnc7ddbh7c8smawmrdwfd"; depends=[mvtnorm survival]; }; factormodel = derive2 { name="factormodel"; version="1.0"; sha256="0yvp8mk42hi1vhrw29djabndc8pbbpjbr6bwss95wsmk7zvvf6i2"; depends=[dplyr gtools nnet pracma]; }; factorplot = derive2 { name="factorplot"; version="1.1-2"; sha256="025lfk122w66yxym3njcpzwnbhg40xi7p1c9vnxczcb8kz31745s"; depends=[multcomp nnet]; }; @@ -9182,7 +9205,7 @@ in with self; { factory = derive2 { name="factory"; version="0.1.0"; sha256="1715bx2rn8kk5qd196jnrv5f95l54n4y0aqqdzfkgrmqihcy8ahx"; depends=[purrr rlang]; }; factset_analyticsapi_engines = derive2 { name="factset.analyticsapi.engines"; version="3.0.1"; sha256="0v96z837dii1q7mbpd48zwpl2qjzqnhignb80g0xkc4iygsnrrms"; depends=[caTools httr jsonlite R6 rlang]; }; factset_protobuf_stach_v2 = derive2 { name="factset.protobuf.stach.v2"; version="1.0.3"; sha256="1b8w4fcjlznpwziwb7cv9a5nhc410h8a9af09430379qhmvin9mx"; depends=[R6 RProtoBuf]; }; - factualR = derive2 { name="factualR"; version="0.5"; sha256="1wz8ibcmilcx62yy29nd2i1pdmjf7fm0g9i5s58gdn8cjlhnw1jl"; depends=[RCurl RJSONIO]; }; + factset_protobuf_stachextensions = derive2 { name="factset.protobuf.stachextensions"; version="1.0.1"; sha256="1mqni01ryv8m4yw87c1m0qf4nr5zhs3654ph04xbqxhq5h0qrwng"; depends=[jsonlite R6 stringr]; }; fad = derive2 { name="fad"; version="0.3-3"; sha256="1xii15lcfb72jmwgqfb4x0h0xs7cxj1hzx8289sq1ibakiwkkv5l"; depends=[Matrix Rcpp RcppEigen RSpectra]; }; fail = derive2 { name="fail"; version="1.3"; sha256="0vfm6kmpmgsamda5p0sl771kbnsscan31l2chzssyw93kwmams7d"; depends=[BBmisc checkmate]; }; fairadapt = derive2 { name="fairadapt"; version="0.2.1"; sha256="13qly0yjf33z1n1id2a5hrciq17fgfw87rj7gyicy23jsc21va0w"; depends=[assertthat cowplot ggplot2 igraph qrnn quantreg ranger scales]; }; @@ -9199,7 +9222,7 @@ in with self; { fam2r = derive2 { name="fam2r"; version="1.2"; sha256="0pq5cmzwk3s8cz5x8dsfb2d6qfpapkrwbzvkqmqkhcwhwryy40mm"; depends=[Familias paramlink]; }; famSKATRC = derive2 { name="famSKATRC"; version="1.1.0"; sha256="1xbh0by4sjxrmy00v1svcj3lb98p9krpncbhpjbli1jd2p47yk60"; depends=[bdsmatrix CompQuadForm coxme kinship2]; }; fame = derive2 { name="fame"; version="2.21.1"; sha256="18lzf2vxyzlmd73m9q0si663mjjm66nrf7q1iy0fw73gpvxqr9bf"; depends=[tis]; }; - familial = derive2 { name="familial"; version="1.0.1"; sha256="01vswgjr2kpmrrfhlbkz023mawklw2ff9l9z9nx2x2hs48kxgkh1"; depends=[DepthProc ggplot2 matrixStats]; }; + familial = derive2 { name="familial"; version="1.0.2"; sha256="1pk4l8bgfs6nl8d3w8gksv4szfbqnw6sv0lzh1piyvkpyylfm1i7"; depends=[DepthProc ggplot2 matrixStats]; }; familiar = derive2 { name="familiar"; version="1.0.0"; sha256="04shvnx81vppswyj3x4zi4rp0mll8l165ckmv27fsbgf5iija70m"; depends=[data_table rlang rstream stringi survival]; }; fanc = derive2 { name="fanc"; version="2.2"; sha256="1gdkxb2ay0lyldjpg4s2fbavjxl4q1bf9q438csqa4vzl5ywv2w8"; depends=[Matrix]; }; fancycut = derive2 { name="fancycut"; version="0.1.2"; sha256="1xg5qjxf77g10h07x6rvb8c3klc9gbr77bkw352qpas268pkswl2"; depends=[]; }; @@ -9237,6 +9260,7 @@ in with self; { fastText = derive2 { name="fastText"; version="1.0.1"; sha256="0l0pkr3a8qckvzazh6rsz94rab8v96y4wis2my29srkwv4h447bn"; depends=[data_table ggplot2 glue Rcpp]; }; fastTextR = derive2 { name="fastTextR"; version="2.0.0"; sha256="1ggmwsw2qnq8v3s8iaxi8q66c898pc15wfgpsp6h0mc761qih5lf"; depends=[Rcpp slam]; }; fasta = derive2 { name="fasta"; version="0.1.0"; sha256="0wnppxn3039dj58xm0b66fsyq537bk8k8m56im11xj1iwc3zc6vw"; depends=[]; }; + fastadi = derive2 { name="fastadi"; version="0.1.0"; sha256="0vrsz2vf2rxj2vyv1dcjwy8g7s942j5695lb7jkmdaw6lp3k4gh0"; depends=[ellipsis glue logger LRMF3 Matrix Rcpp RcppArmadillo RSpectra]; }; fastai = derive2 { name="fastai"; version="2.1.0"; sha256="1ssmx49c4qzvr4m84s8vwyrg890l2vfglh9rqkf4ljc1x2bkf8z1"; depends=[generics ggplot2 ggpubr glue png reticulate]; }; fastclime = derive2 { name="fastclime"; version="1.4.1"; sha256="0zcir8r11b2hxr9vvkmvxlzmhfcaxbr0wbjy86ysr912mp8fs9i3"; depends=[igraph lattice MASS Matrix]; }; fastcluster = derive2 { name="fastcluster"; version="1.2.3"; sha256="009amz7i5yndqw2008fgd3p11n4fsb291k2ypg3pip6dw4lr28hz"; depends=[]; }; @@ -9254,7 +9278,7 @@ in with self; { fastmaRching = derive2 { name="fastmaRching"; version="1.1.0"; sha256="085xr5i6h6vwl1flzbkwqsm8d815s0p02p0mir60jqjvy0s7haip"; depends=[raster rgdal sp]; }; fastmap = derive2 { name="fastmap"; version="1.1.0"; sha256="0aw29hnq3ppn7bsnwg9d9sp84k1cvq30lrmfzqn315n0nhkfa4wi"; depends=[]; }; fastmatch = derive2 { name="fastmatch"; version="1.1-3"; sha256="0qcq1gwl9pijgp34giyq5y9rk0ly3d7xza2b7r68xx63ifqa1vqx"; depends=[]; }; - fastmatrix = derive2 { name="fastmatrix"; version="0.3-8196"; sha256="1dlgjz7kh995hwz74kgin7ip8x0nnar18gnc3h4mm6bvc9yf1ykj"; depends=[]; }; + fastmatrix = derive2 { name="fastmatrix"; version="0.4"; sha256="1mbqyrj01fqbnpncqy9lk2dshqk1l55i2r2ll7gs10ykqbbjjlsp"; depends=[]; }; fastmit = derive2 { name="fastmit"; version="0.1.1"; sha256="13hczsfbzssd272kpbq8l2l64lqrkmi2j6f3xyp9jvvxdd506kq0"; depends=[Rcpp RcppArmadillo]; }; fastnet = derive2 { name="fastnet"; version="1.0.0"; sha256="1c07msypxj8ilpa1il9jjbgylwpdxv8j8gak362xdmbm4b1bwlm6"; depends=[doParallel foreach igraph tidygraph]; }; fastpos = derive2 { name="fastpos"; version="0.4.1"; sha256="0h6drzzc3f1dc5ydi5x9c7wday18sgzi8zn4pf5wxlzsc4qj0pzf"; depends=[future MASS plyr Rcpp RcppArmadillo RcppProgress]; }; @@ -9264,7 +9288,7 @@ in with self; { fastrmodels = derive2 { name="fastrmodels"; version="1.0.2"; sha256="1333546nk429l6s4icbmx8hmh29wsc252wbmmhsmgb116l4ra9zi"; depends=[xgboost]; }; fastshap = derive2 { name="fastshap"; version="0.0.7"; sha256="0gxch67i3bj6m8nb94m5hswq058w6n1q9war4dy2qnimlv7cmhdv"; depends=[abind ggplot2 gridExtra matrixStats plyr Rcpp RcppArmadillo tibble]; }; fasttime = derive2 { name="fasttime"; version="1.0-2"; sha256="11i4c0zrkvvqsax0az1fvmc0jxfsjyx28434k1qgzhj9g2j9m9cf"; depends=[]; }; - fastverse = derive2 { name="fastverse"; version="0.2.1"; sha256="0ys75qw5ag7mynwk4xyjb8jlsgbffqjxn2h1dznxzhsa953v39xk"; depends=[collapse data_table fst kit magrittr matrixStats]; }; + fastverse = derive2 { name="fastverse"; version="0.2.3"; sha256="1jp9lipx19zihakjp2la8rk4pxks0p8saagp75nr0xq2vdylqg27"; depends=[collapse data_table fst kit magrittr matrixStats]; }; fat2Lpoly = derive2 { name="fat2Lpoly"; version="1.2.5"; sha256="08bbd17aqmfcacvk283bpf9cp1isf5pgfdciwxn0f7ahdzd81g4s"; depends=[kinship2 multgee]; }; faux = derive2 { name="faux"; version="1.1.0"; sha256="0cmgsm8c8w5d5zk00j4872x7fby0rdi7lmw0w0ncahlnh72grpjm"; depends=[dplyr ggplot2 jsonlite lme4 rlang truncnorm]; }; fauxnaif = derive2 { name="fauxnaif"; version="0.6.1"; sha256="1hw6lkxvxd65wajr0mpmbg8lvx0sd84py1apzqfnr7xpb4r1hi85"; depends=[glue lifecycle rlang]; }; @@ -9274,9 +9298,9 @@ in with self; { fbRads = derive2 { name="fbRads"; version="0.2"; sha256="1a65gfvizzm6psspcvlhkxligdf9j1whrgzkg7ww520lk3z8lnnd"; depends=[bit64 data_table digest futile_logger jsonlite plyr RCurl]; }; fbRanks = derive2 { name="fbRanks"; version="2.0"; sha256="17kbmdpgqkj2n951c6mdsrgfga6kiij1gqiw1wpi0q3fq4dlfrzx"; depends=[igraph stringr]; }; fbar = derive2 { name="fbar"; version="0.6.0"; sha256="005725xiz6k868hrj12ryq3xlyin2r94n0yychimjzhfsppx2zba"; depends=[assertthat dplyr magrittr Matrix purrr rlang ROI ROI_plugin_ecos stringr tibble tidyr]; }; - fbati = derive2 { name="fbati"; version="1.0-4"; sha256="0vqn73zcqgg89zkfgf0ika0s87f4gb6nxds1dmliiq36p28dhv2c"; depends=[fgui pbatR rootSolve]; }; + fbati = derive2 { name="fbati"; version="1.0-5"; sha256="037rzw2mnhb7m83hrx8pzwy2n4fyhbjzg2nhmlgxyr1qra638p3v"; depends=[fgui pbatR rootSolve]; }; fbroc = derive2 { name="fbroc"; version="0.4.1"; sha256="1v73wl3yckcqx43fz1lzcsy6v08vmbmi7yi623yhgqywixxv2bx3"; depends=[ggplot2 Rcpp]; }; - fbst = derive2 { name="fbst"; version="1.6"; sha256="01l7lpk5m7qbr0zp2wghmanfrj7dsjr1r161vklhn7f02hdin2va"; depends=[bayestestR]; }; + fbst = derive2 { name="fbst"; version="1.7"; sha256="1gawrkv13yizmsyvlz8rcq0jbylh423ip28hbicpkycr6hb3xnkh"; depends=[bayestestR]; }; fc = derive2 { name="fc"; version="0.1.0"; sha256="0x41xfchy499kz0qi7fp12vpkbcddprv19mmk48lxzavv4f5avfh"; depends=[codetools]; }; fca = derive2 { name="fca"; version="0.1.0"; sha256="0jcdyylb0byz70k3kypa2mdd5sc5nq81jfbpljjg2amczq7s5wzy"; depends=[]; }; fcaR = derive2 { name="fcaR"; version="1.1.1"; sha256="1jhhjsgw3vsgrz5mv961m61y39cs5zpi0m82yf38r6ngrjy52cqg"; depends=[forcats fractional magrittr Matrix purrr R6 Rcpp registry settings stringr tibble tikzDevice]; }; @@ -9297,7 +9321,6 @@ in with self; { fdaMocca = derive2 { name="fdaMocca"; version="0.1-0"; sha256="0jqk07cs62hhsp68bpf0lcggn547jp7qjc4w55dq51fhshppc280"; depends=[doParallel fda foreach Matrix mvtnorm]; }; fdaPDE = derive2 { name="fdaPDE"; version="1.0-9"; sha256="06hm1f30rpy37xz9ybvhk759y10p8ijy7slnl9cvp4gqwzy2i8b7"; depends=[geometry Matrix plot3D plot3Drgl RcppEigen rgl]; }; fdaPOIFD = derive2 { name="fdaPOIFD"; version="1.0.2"; sha256="0rs61ja58mxpadfgkvdjq14rgaikcga0alc5a1afnrjx4djswl1k"; depends=[FastGP fdapace ggplot2 magrittr MASS patchwork reshape2 tibble]; }; - fdacluster = derive2 { name="fdacluster"; version="0.1.0"; sha256="17vk3v8saf3xqab8h92k88l2xfwa3mb0x40p1mdgywgg23nvk3mm"; depends=[dplyr ggplot2 magrittr nloptr purrr Rcpp RcppArmadillo tibble tidyr]; }; fdadensity = derive2 { name="fdadensity"; version="0.1.2"; sha256="1i2xzchlsixgjzyfmbv547sy6mq90xrnyc2kpd11wwfgfrpj1ix3"; depends=[fdapace Rcpp]; }; fdakma = derive2 { name="fdakma"; version="1.2.1"; sha256="0j9qgblrl7v4586dd6v0hjicli6jh8pkk5lzn8afpl75xfs24six"; depends=[]; }; fdaoutlier = derive2 { name="fdaoutlier"; version="0.2.0"; sha256="1jpd9mszd0grn7rwi3dmgl6l5dggwsnz1kyljz2gcfm2wck2zhbz"; depends=[MASS]; }; @@ -9325,6 +9348,7 @@ in with self; { features = derive2 { name="features"; version="2015.12-1"; sha256="0rd8r1dxzddb6718hcm8ck7531c9wdrjfy8n67875bbxgzcvds61"; depends=[lokern]; }; featuretoolsR = derive2 { name="featuretoolsR"; version="0.4.4"; sha256="0zrb3hb9axcfqc1b5cyhasm3p6jvgh7hd3085w7zag66pizqjwws"; depends=[caret cli dplyr magrittr purrr reticulate rstudioapi stringr testthat tibble]; }; featurizer = derive2 { name="featurizer"; version="0.2"; sha256="05jvwsvpbdj94q3wl7ld6xmfc9p7ff9zsmryd3mmxz0hzbq2cnkc"; depends=[]; }; + febr = derive2 { name="febr"; version="1.9.9"; sha256="13jkp5dbjvb94da1a4vcfkr6gp04xyfj8lv76d8xc3af507k3mqs"; depends=[data_table]; }; fec16 = derive2 { name="fec16"; version="0.1.3"; sha256="0azvrg98li535mqa2awhmfisfyfr4d8dw0ynikxmp0z1w9l3dx1p"; depends=[dplyr readr vroom]; }; fechner = derive2 { name="fechner"; version="1.0-3"; sha256="0bassigcipwlr2g8cdjh8jyhmb903k3hla9gnigcbz7qwzlfwa86"; depends=[]; }; federalregister = derive2 { name="federalregister"; version="0.2.0"; sha256="0qr8nd3ylnwcv1wxspw5i7ray5sh30zr648spg0lpqq8dp2b8p7b"; depends=[curl httr jsonlite]; }; @@ -9343,19 +9367,20 @@ in with self; { fflr = derive2 { name="fflr"; version="2.0.2"; sha256="057m2lgzfvid4618vlzmxgrw7vg1bff6i0qy8b2khk8dynk8p25v"; depends=[httr jsonlite tibble]; }; ffmanova = derive2 { name="ffmanova"; version="1.1.0"; sha256="0019m9vxnh5yxr5k7zflzyhd533a842cjjkcpqyannshnrbfndvy"; depends=[]; }; ffmetadata = derive2 { name="ffmetadata"; version="1.0.0"; sha256="0gjv5fl3p0kz28c91l4qf34a2685a24l5841ixdg7wivfs5v9npv"; depends=[httr jsonlite]; }; - ffp = derive2 { name="ffp"; version="0.1.0"; sha256="11c25lcy5fzchc00cv7r9g92gnb6iffmcylibs1w42245r69bsnh"; depends=[assertthat dplyr forcats ggdist ggplot2 lubridate magrittr mvtnorm NlcOptim pracma purrr rlang scales tibble tidyr usethis vctrs xts]; }; + ffp = derive2 { name="ffp"; version="0.2.0"; sha256="1bx9ymd7mmic01wkwaczdxw1y4a7cb8ayl42k743hznqnr8vrpmn"; depends=[assertthat crayon dplyr forcats ggdist ggplot2 lubridate magrittr mvtnorm NlcOptim nloptr purrr rlang scales stringr tibble tidyr vctrs]; }; ffscrapr = derive2 { name="ffscrapr"; version="1.4.7"; sha256="1qfclfvz1xa9mamn9rjmwyrrpsj8cr6ri5040g2gfxjag0by5n21"; depends=[cachem checkmate dplyr glue httr jsonlite lifecycle magrittr memoise nflreadr purrr rappdirs ratelimitr rlang stringr tibble tidyr]; }; ffsimulator = derive2 { name="ffsimulator"; version="1.2.0"; sha256="134qcvi698ynrf3c1pg4mfd5hf2jv4x5qh1jsldfy1fhmrnaxj81"; depends=[checkmate cli data_table ffscrapr glue magrittr nflreadr Rglpk rlang tidytable]; }; ffstream = derive2 { name="ffstream"; version="0.1.6"; sha256="036ikhah4y85khgfmvxwsn3vavvw1is8i9k2lw474wxlh4cxa3kd"; depends=[Rcpp]; }; fftw = derive2 { name="fftw"; version="1.0-6.1"; sha256="1s16r8qr1w85k5i0wfj4gc3cnwqg3yx2nbk9mcfb3j95jx7jphzz"; depends=[]; }; fftwtools = derive2 { name="fftwtools"; version="0.9-11"; sha256="0zrchp4l0jdbir2gibjf00x225y9giqk80zvqmr2yyvc12lwkw7i"; depends=[]; }; fgac = derive2 { name="fgac"; version="0.6-1"; sha256="0paddf5a4w0g2i0ay7my0bppwh534d8ghy6csfxl5jj034xjgwkk"; depends=[]; }; - fgdr = derive2 { name="fgdr"; version="1.1.0"; sha256="0xllws7z3crbwibyhm3w06zagvlbmn3rcy8ccgkdhl0am3q7dz0a"; depends=[data_table jpmesh magrittr purrr raster readr rlang sf stars stringr terra tibble units xml2]; }; + fgdr = derive2 { name="fgdr"; version="1.1.1"; sha256="12rccdh1dmh8azwid8wgkdz8d7lqrdzr5n294j2fawqf4naff2gm"; depends=[data_table jpmesh magrittr purrr raster readr rlang sf stars stringr terra tibble units xml2]; }; fgeo = derive2 { name="fgeo"; version="1.1.4"; sha256="0axglmk05li3plb79rccskhddjzq3pdx3mgxr8yqysymf1nscrq6"; depends=[cli crayon dplyr fgeo_analyze fgeo_plot fgeo_tool fgeo_x glue magrittr purrr rlang rstudioapi]; }; fgeo_analyze = derive2 { name="fgeo.analyze"; version="1.1.14"; sha256="0pnmvq6imnffvr4qlmygmmw18g33s81f5jrrs7n4ahwi0qmf5qaj"; depends=[dplyr fgeo_tool glue lubridate magrittr MASS purrr rlang tibble tidyr withr]; }; fgeo_plot = derive2 { name="fgeo.plot"; version="1.1.10"; sha256="0lg74ckdm3nn91526cg6gly3lpsv315n2kfmf4bsmprj8k0zj31s"; depends=[dplyr fgeo_tool ggplot2 ggrepel glue magrittr purrr rlang stringr]; }; fgeo_tool = derive2 { name="fgeo.tool"; version="1.2.7"; sha256="1272zaa78s6ypfavhf6fy0fl23i71w4s549bpkb94rvalg2026ak"; depends=[dplyr glue magrittr purrr readr rlang tibble tidyselect]; }; fgeo_x = derive2 { name="fgeo.x"; version="1.1.4"; sha256="0swps9rli74fmfb2j4kf55kw39gxz0q49m74ad4vcs0ylyp0sxrb"; depends=[memoise]; }; + fgitR = derive2 { name="fgitR"; version="0.2.0"; sha256="0ncwd3wgkll11447qjlq3ihx876d1jv067pcrfswia31jrb700wl"; depends=[devtools git2r httr]; }; fglsnet = derive2 { name="fglsnet"; version="1.0"; sha256="00qn4k4xm1zfkz77lys468c1mfx3vyfjkf19wdbcvgssrmf6w0xd"; depends=[lmtest MASS Matrix matrixcalc network sandwich sna]; }; fgm = derive2 { name="fgm"; version="1.0"; sha256="0i6lbqxxjq78dql14qwqs7slnn0kyls2g3a9biabny2narwf6n3m"; depends=[fdapace JGL]; }; fgof = derive2 { name="fgof"; version="0.2-1"; sha256="0bclkb3as0fl2gyggqxczndfyj9pfnni5pa3inpn5msrnjg4g2j2"; depends=[mvtnorm numDeriv]; }; @@ -9365,6 +9390,7 @@ in with self; { fiberLD = derive2 { name="fiberLD"; version="0.1-6"; sha256="1i3bl2qsc77m81l11an9ihl4vy86s8jd5x6pasib77rl2877ad4x"; depends=[doParallel foreach Matrix VGAM]; }; fic = derive2 { name="fic"; version="1.0.0"; sha256="18xz94w1ab17jfi61bdg9z3pm63g488v17ns2ivizkza4gg07pv8"; depends=[abind ggplot2 mvtnorm numDeriv scales survival tensor]; }; fidelius = derive2 { name="fidelius"; version="0.0.2"; sha256="18dsw069j3jzl0splgjjdsybny1hq0dmiyygri8nlfwshijkw15h"; depends=[askpass fs htmltools readr rlang rmarkdown rstudioapi sodium whisker]; }; + fido = derive2 { name="fido"; version="1.0.0"; sha256="09gfji61hixwcr7yrygjzw49c7d586a6b497mvkj9whjdi1dw4vv"; depends=[BH dplyr ggplot2 phyloseq purrr Rcpp RcppEigen RcppNumerical RcppZiggurat rlang tidybayes tidyr]; }; fieldRS = derive2 { name="fieldRS"; version="0.2.3"; sha256="0jr2l5cnrawd6wibmb6r0sngd851z9mbz4mwprnbbqbv3hzzrpm9"; depends=[caret concaveman geosphere ggplot2 raster rgeos sp stringdist vegan]; }; fields = derive2 { name="fields"; version="13.3"; sha256="1hs4k5a9hh0r5fsrnpnvs6wvf78xpjzj8a2j6643dsz73a5q6ln6"; depends=[maps spam viridis]; }; fiery = derive2 { name="fiery"; version="1.1.3"; sha256="1rwnmm4n59wdsvb57bj8mx1qhz93jbvfb73sl111nwqazphrhid1"; depends=[assertthat crayon future glue httpuv later R6 reqres stringi uuid]; }; @@ -9372,7 +9398,7 @@ in with self; { file2meco = derive2 { name="file2meco"; version="0.2.1"; sha256="1m9r7vp766p4lsbzpfzwfp37ylrbnsz63fwnl0h4ykcfqmf9b12m"; depends=[ape dplyr magrittr Matrix microeco R6 rhdf5 tidyr yaml]; }; filearray = derive2 { name="filearray"; version="0.1.3"; sha256="10kpr5c7yq9hk1b6x611vi1pcsis0x1xpi0rs1dqgv310hswa0k5"; depends=[BH digest Rcpp]; }; filebin = derive2 { name="filebin"; version="0.0.5"; sha256="1k13vwppk3f3acnyz32wrjmr80x0lbdzv0sx74xr87n1kbrrv5fn"; depends=[dplyr httr janitor logger purrr stringi tibble tidyr]; }; - filehash = derive2 { name="filehash"; version="2.4-2"; sha256="14zv7h5195dmfksgk8qvjgc2qq8253vga6267aa1bqs5bpvmdl5n"; depends=[]; }; + filehash = derive2 { name="filehash"; version="2.4-3"; sha256="1ga17smgjd4qsnf5a7qk0giwhpc5969ylqj520favs1k6b4y557k"; depends=[]; }; filehashSQLite = derive2 { name="filehashSQLite"; version="0.2-4"; sha256="1higvkmj4wvnwpvayqinzaygiksij20d77dx118q0gffsczadamh"; depends=[DBI filehash RSQLite]; }; filelock = derive2 { name="filelock"; version="1.0.2"; sha256="00ql5fw1hidpfnm0szaavf43ahmsnvdbi8i5lr1nrcc90yaiaadc"; depends=[]; }; filematrix = derive2 { name="filematrix"; version="1.3"; sha256="1v3aj1ng742msb0sfdnjsbqb508mqjf8jlq2v33vxldhradw5w0b"; depends=[]; }; @@ -9390,7 +9416,7 @@ in with self; { findR = derive2 { name="findR"; version="0.2.1"; sha256="1a7cf6kd7i2l4ffr2b17nb9xnpsjhf6fcwpjy06r0qgcapnfp54b"; depends=[pdftools stringr]; }; findpython = derive2 { name="findpython"; version="1.0.7"; sha256="0jf10jpqla90x03kl3k77gnd255zmw9rvr8d724vb17cqawh9yar"; depends=[]; }; findviews = derive2 { name="findviews"; version="0.1.3"; sha256="1l1yhw5hvrn0rpkdsch8m69d2q5284jwccvv7r4ia4m0iqjfipj7"; depends=[ggplot2 gridExtra scales shiny]; }; - finetune = derive2 { name="finetune"; version="0.1.0"; sha256="1raj7knxw6qw1jvd4dgps6v8zcn7akncxar7xwz63sqvw8yav45g"; depends=[cli dials dplyr ggplot2 purrr ranger rlang tibble tidyr tidyselect tune vctrs workflows yardstick]; }; + finetune = derive2 { name="finetune"; version="0.1.1"; sha256="0yi76ww7m4nfd1b7cd3ixarbjwpzh8g016byz2pvchmz2mb10s6h"; depends=[cli dials dplyr ggplot2 purrr rlang tibble tidyr tidyselect tune vctrs workflows]; }; fingerPro = derive2 { name="fingerPro"; version="1.1"; sha256="1a1lj8gyrbgcg8hr03cj2bjzlaafddspri7abc83ys1raqwd4j68"; depends=[car GGally ggplot2 gridExtra klaR MASS plyr Rcmdr Rcpp RcppGSL RcppProgress reshape rgl scales]; }; fingerprint = derive2 { name="fingerprint"; version="3.5.7"; sha256="04jcwkydjrs31pia6kq8z2n9s54im950q08hs2ay15xjxxkmb8ic"; depends=[]; }; finiteruinprob = derive2 { name="finiteruinprob"; version="0.6"; sha256="0z4l0crymh58chxniqq70fqmvi6f5jkgvz72vbc7s3l9lrrapgr3"; depends=[numDeriv sdprisk]; }; @@ -9401,17 +9427,17 @@ in with self; { fipe = derive2 { name="fipe"; version="0.0.1"; sha256="055jav8h4wws76jahm2d5dj49wkvzchh3f2vk5d50pny4dc7smar"; depends=[dplyr forcats furrr future httr jsonlite lubridate magrittr purrr readr stringr tibble tidyr]; }; fipio = derive2 { name="fipio"; version="1.1.0"; sha256="1y153096wkihzcwcycf492wbc4mwlmqsm8hyjljx3zddmx2iklvk"; depends=[]; }; fipp = derive2 { name="fipp"; version="1.0.0"; sha256="0wr3czwsqwa1bpdcjk0r1739vjanxc0fv0vnl3r5lgykrbhw9v3r"; depends=[matrixStats Rcpp RcppArmadillo]; }; - firebase = derive2 { name="firebase"; version="1.0.0"; sha256="0bva63wkawvw74r3kj0lagx3bkq7yx4lzjafhxa2jk9xrnsg6gmw"; depends=[base64enc cli htmltools jose jsonlite openssl R6 shiny]; }; + firebase = derive2 { name="firebase"; version="1.0.1"; sha256="0sdv3l13byqn4sfp360scj4260adyvnbvzxkc88zvg3k33fx5hmn"; depends=[base64enc cli htmltools jose jsonlite openssl R6 shiny]; }; firebehavioR = derive2 { name="firebehavioR"; version="0.1.2"; sha256="10krny60dkpgwjjnriap91qmrnfq1rl5ck4ynf4h6x016bv0m374"; depends=[ggplot2]; }; fishMod = derive2 { name="fishMod"; version="0.29"; sha256="0pbs4z27vwa3c42xdw3mr6l2i581bgvn2pk52kawbcnnlsff92ar"; depends=[]; }; fishbc = derive2 { name="fishbc"; version="0.2.1"; sha256="15mlr113qgndjhyry8img50jfk0si81kw2cdgl896b0g4djc5la3"; depends=[]; }; fishdata = derive2 { name="fishdata"; version="1.0.1"; sha256="0hskmw93pyrm5wxn1dw8vi18v11jnf03yx375hjkk38hcfnp6n5k"; depends=[]; }; fisheye = derive2 { name="fisheye"; version="0.1.0"; sha256="0yrgr0nhnn768q6hc2dsjz7y3n7p7ci0rdfqsickafgv2srdrh83"; depends=[sf]; }; - fisheyeR = derive2 { name="fisheyeR"; version="0.9"; sha256="1w6va7gakqq2q8hsvdszpn8s2ysdfc648bk5p5v3wbl5s403bci8"; depends=[tkrplot]; }; fishkirkko2015 = derive2 { name="fishkirkko2015"; version="1.0.0"; sha256="1s8vsf604rc6qk0gahn61p3q8p9dhsbq14wsmrin7icq2xgl3y81"; depends=[]; }; fishmethods = derive2 { name="fishmethods"; version="1.11-3"; sha256="17fghylmc4xs8b9p2ybgdpjxkjb4zg7qxhb75sdj0q0bvs1mhyiq"; depends=[boot bootstrap data_table lme4 MASS numDeriv]; }; fishmove = derive2 { name="fishmove"; version="0.3-3"; sha256="1knbv087cg0czjcgdbrlpg69pp1dxb57b7ak5j1mcy7ay3a41a9h"; depends=[boot ggplot2 MASS plyr]; }; fishtree = derive2 { name="fishtree"; version="0.3.4"; sha256="00g8p885z5xcqp2chncb177s0l6lab2f069szj861z9dyf93xx4z"; depends=[ape jsonlite memoise rlang]; }; + fishualize = derive2 { name="fishualize"; version="0.2.3"; sha256="0iygh6mlxlsk6yq26i5rry9gh6qkrn5sbgsa2wpdxmm1ip1nzml0"; depends=[curl downloader dplyr ggplot2 gridExtra httr magrittr png rlang scales stringr tidyr]; }; fit_models = derive2 { name="fit.models"; version="0.64"; sha256="1nk4x2q8cv79zcls61saf627ac0fci6jcrd6lmzk61asm2zhc27p"; depends=[lattice]; }; fitConic = derive2 { name="fitConic"; version="1.2"; sha256="0mwnbq32mpj8d4127jwb283mn3gs4hm0klwk9prsrfkdnhqai41i"; depends=[pracma]; }; fitDRC = derive2 { name="fitDRC"; version="1.1.1"; sha256="09z9l27iwl0fd3zy6rsdhmy8qbm5d9a4wcaj5rxp7ynlnpi102aa"; depends=[]; }; @@ -9420,19 +9446,20 @@ in with self; { fitPoly = derive2 { name="fitPoly"; version="3.0.0"; sha256="0ws1vsh8if9i9i7820ak32b0bysjc0z09nbrk17qpms0b11cpc3g"; depends=[foreach]; }; fitTetra = derive2 { name="fitTetra"; version="1.0"; sha256="0ia6wk4gicpmn6kclsd28p7v1npwfv2blagiz0cxzwfw3njv103g"; depends=[]; }; fitbitScraper = derive2 { name="fitbitScraper"; version="0.1.8"; sha256="0b4d7xw6inp6l1dkfwyrzxwg4vspp4vzlwrhv14ajxrqz6irj8a0"; depends=[httr jsonlite stringr]; }; - fitbitViz = derive2 { name="fitbitViz"; version="1.0.2"; sha256="1jvjb7plgfzak3j6wpgp0rzm7y6caja5ibkqfahfhid3li2iiwv0"; depends=[data_table exactextractr geodist ggplot2 ggthemes glue hms httr jsonlite leafgl leaflet lubridate magrittr OpenImageR paletteer patchwork raster rayshader rstudioapi scales sf sp varian viridis XML]; }; + fitbitViz = derive2 { name="fitbitViz"; version="1.0.4"; sha256="1cp5nkaj9ikqcv3yp030id1wklj3jnx002sz2ib0vzza81zyw8bw"; depends=[data_table ggplot2 ggthemes glue hms httr jsonlite leafgl leaflet lubridate magrittr paletteer patchwork raster rayshader rstudioapi scales sf terra varian viridis XML]; }; fitbitr = derive2 { name="fitbitr"; version="0.2.0"; sha256="1v5mhqdiynla7rmspxp5bg6xjjxac0y3qh2nv82pr3fvzvxrrqz8"; depends=[dplyr httr janitor jsonlite lubridate magrittr purrr rlang tibble tidyr]; }; - fitdc = derive2 { name="fitdc"; version="0.0.1"; sha256="1b1abib7jkl7a6r686r53qjw2ywb9q2h67is8691kkaqxpawg30p"; depends=[]; }; fitdistrplus = derive2 { name="fitdistrplus"; version="1.1-6"; sha256="1glnbcm1gghzgvzpxcfsmn7dp2f9jqyx39n3ydwp9fx38409khhp"; depends=[MASS survival]; }; fitmix = derive2 { name="fitmix"; version="0.1.0"; sha256="1z7jgxz119lkyggmgpykcslv56z1i7pnbp872jkdni77sx94x89c"; depends=[]; }; fitplc = derive2 { name="fitplc"; version="1.2-3"; sha256="1yg3ch907c4gk7q8hxgwqxgngkmy125j3ni917nkzi7hn59krd1n"; depends=[car nlme]; }; - fitteR = derive2 { name="fitteR"; version="0.1.0"; sha256="1kgnyl7am966vkfap8gmvchlpankrcj5dv5aj7ws8ix9shr76db6"; depends=[dplyr DT maxLik R_utils shiny]; }; + fitscape = derive2 { name="fitscape"; version="0.1.0"; sha256="0y9x0n61y366f35d594523l3c5sjaf87msxhnlbs2w3g7d53yvfb"; depends=[]; }; + fitteR = derive2 { name="fitteR"; version="0.2.0"; sha256="0l33j69fdfpsp77a1vwqg07b65qaxs875r7lhy2bfi6mxgcklby9"; depends=[dplyr DT maxLik R_utils shiny]; }; fitur = derive2 { name="fitur"; version="0.6.2"; sha256="0bx1w1bpz3i2ybwl386s8y8nxyqwk6w33aqyyw94aq6ink3bw2aw"; depends=[actuar DT e1071 fitdistrplus ggplot2 goftest miniUI rstudioapi shiny]; }; fitzRoy = derive2 { name="fitzRoy"; version="1.1.0"; sha256="1vv1sahxbabmqh3h8p60af8xbjp3irp2nmdd3a1w4nwjpykycrqy"; depends=[cli dplyr glue httr jsonlite lubridate magrittr progress purrr readr rlang rvest stringr tibble tidyr tidyselect xml2]; }; fivethirtyeight = derive2 { name="fivethirtyeight"; version="0.6.2"; sha256="0nja8zbbkrxrvznyi1c38yzv6djx58ac5y4l1nkf07ph5d9i3k81"; depends=[]; }; fixedTimeEvents = derive2 { name="fixedTimeEvents"; version="1.0.1"; sha256="18cqbxrs69p60anvii22mhqkwh5y2mxapmznff9g7j1j6h4h62lr"; depends=[]; }; fixerapi = derive2 { name="fixerapi"; version="0.1.6"; sha256="0ikf8dn0l9c9gshp4bph3wasl0bh6lfybinc8n1rvb202231hmgb"; depends=[jsonlite tibble tidyr]; }; - fixest = derive2 { name="fixest"; version="0.10.1"; sha256="0gjzgchlcx8vmfbqg80xwj6azna5l7dw9l31bcybd2fg817mixvm"; depends=[dreamerr nlme numDeriv Rcpp sandwich]; }; + fixest = derive2 { name="fixest"; version="0.10.3"; sha256="1idc20ih5qmifi0w74zp1ak19qcz4k0718i2210k0b2rc2axl4fm"; depends=[dreamerr nlme numDeriv Rcpp sandwich]; }; + fixtuRes = derive2 { name="fixtuRes"; version="0.1.3"; sha256="1vmdbx1pfk4kcxq5q5hj4v6rz403xw66gpg6zpvrxkpcgkx2dwyz"; depends=[checkmate dplyr glue lubridate purrr R6 rlang stringi yaml]; }; fizzbuzzR = derive2 { name="fizzbuzzR"; version="0.1.1"; sha256="119gbi9y4n8r52hk9vj7zf795dv9xnk7lnngljjcd7ydnhygwd4h"; depends=[]; }; flacco = derive2 { name="flacco"; version="1.8"; sha256="15h2q9xgddy7gw6r52c2nk618f3z1mjn4xz9pzdvhm1d3kqggwa4"; depends=[BBmisc checkmate mlr]; }; flagr = derive2 { name="flagr"; version="0.3.2"; sha256="195c78cml2pjzfvpkaxbzcg1dfdqxi76138p0v3x3zzva9d8nlji"; depends=[]; }; @@ -9454,7 +9481,7 @@ in with self; { flexCWM = derive2 { name="flexCWM"; version="1.92"; sha256="1fxwq12mki10ikf5lyh1pb58svfzs4llg68v4d9iznia8aa0grhq"; depends=[ContaminatedMixt mclust numDeriv statmod]; }; flexclust = derive2 { name="flexclust"; version="1.4-0"; sha256="0x7wxk8y46ndyz6fdacym0rd6p9wh3pcfr28chjcg5d7fm849zl2"; depends=[class lattice modeltools]; }; flexdashboard = derive2 { name="flexdashboard"; version="0.5.2"; sha256="1bh759llp15fxrx2rwvxd8p3w84vjmkid32ism7zg49a127fjib4"; depends=[htmltools htmlwidgets jsonlite knitr rmarkdown shiny]; }; - flexiblas = derive2 { name="flexiblas"; version="3.0.0"; sha256="1nlddwqnqkq5lv0bnsg0rbci6sjwkplqp71zdxn6pqyysyq036gb"; depends=[]; }; + flexiblas = derive2 { name="flexiblas"; version="3.1.0"; sha256="0kgkxzx8lgw0lmszwd4fipvhpgak753bdcm81w25ilp5pzd8x6ii"; depends=[]; }; flexmet = derive2 { name="flexmet"; version="1.1"; sha256="1xcs4gs5aanvfsf6bgj28jsjdxrx0dz475xsw8hd6y44qdgw1sqb"; depends=[]; }; flexmix = derive2 { name="flexmix"; version="2.3-17"; sha256="0jangf89174p0idh9afbicfiln2sz8jxc3bjc6n0j9036dw9n09n"; depends=[lattice modeltools nnet]; }; flexmixNL = derive2 { name="flexmixNL"; version="0.0.1"; sha256="0bk5v0cnsn1qkd1b86vj0bnpr4l9d6523kpkgzb1l1sqyscawfmm"; depends=[flexmix gnm]; }; @@ -9462,10 +9489,10 @@ in with self; { flexrsurv = derive2 { name="flexrsurv"; version="1.4.5"; sha256="1xwh6fj854hr5j1mdh4cbp3hbrbdl4nb2ili876rq08wb9wq5pkf"; depends=[Epi formula_tools matrixcalc orthogonalsplinebasis statmod survival]; }; flexsurv = derive2 { name="flexsurv"; version="2.1"; sha256="0kwij9nkdvnsn1kn12fj3hjkd2qpgw7bdda4qad7basq5p6divlp"; depends=[assertthat deSolve dplyr generics magrittr Matrix mstate muhaz mvtnorm numDeriv purrr quadprog Rcpp rlang rstpm2 survival tibble tidyr tidyselect]; }; flexsurvcure = derive2 { name="flexsurvcure"; version="1.2.0"; sha256="06qppcjml380drd6brc60j1swasqrmdx82h6x69xpb65zn9wpa3c"; depends=[flexsurv gtools survival]; }; - flextable = derive2 { name="flextable"; version="0.6.10"; sha256="01nm0357b0z4dgrplbq9ms63j51n0rgvvxyy068zdsc5p7j3lql2"; depends=[base64enc data_table gdtools htmltools knitr officer rlang rmarkdown uuid xml2]; }; + flextable = derive2 { name="flextable"; version="0.7.0"; sha256="15vr5lb87712mymsvv01kz9s1fb54sx5kybsa2x547k5g10dbrbm"; depends=[base64enc data_table gdtools htmltools knitr officer rlang rmarkdown uuid xml2]; }; flifo = derive2 { name="flifo"; version="0.1.5"; sha256="03x66l3ryrjvwbxxd0ncjrb5w9kc7fswmp5psb1cb7r87f395gm3"; depends=[bazar pryr]; }; flightplot = derive2 { name="flightplot"; version="0.1.0"; sha256="1276lsahr9kdsvp1ismm3b5syvhfr7ifizzd79f8w1h2rjblva8x"; depends=[dplyr geosphere ggplot2 ggrepel magrittr rlang sf tibble]; }; - flightsbr = derive2 { name="flightsbr"; version="0.0.1"; sha256="1la95d397jx4s5mhg4ck5hb8r4m61lsnpbd0gkdpijiqsjhwp8zr"; depends=[data_table httr]; }; + flightsbr = derive2 { name="flightsbr"; version="0.1.1"; sha256="0wgiikbz8jm3pgj47jad9mzvdgbp1wbwfr3ps0ncrk11vdw2iqpf"; depends=[data_table httr parzer pbapply rvest]; }; flintyR = derive2 { name="flintyR"; version="0.0.2"; sha256="13bzglcwd4r6q8ix8diy2dljns722k29zbd782fvkxc59ikx7dja"; depends=[assertthat doParallel foreach Rcpp RcppArmadillo testthat]; }; flip = derive2 { name="flip"; version="2.5.0"; sha256="08x5hwxaxbgc745gblja7gcy0b5wbp7jf90lkha75zl5cc9iyksl"; depends=[cherry e1071 plyr someMTP]; }; flipbookr = derive2 { name="flipbookr"; version="0.1.0"; sha256="0ls51risk3qn5fagw31i2kibrxk7xk3845a1cccd83sc4c8ilgjx"; depends=[dplyr glue knitr magrittr purrr rmarkdown stringi stringr tibble tidyr]; }; @@ -9479,7 +9506,7 @@ in with self; { flock = derive2 { name="flock"; version="0.7"; sha256="1zg93p74icj4bhxnmnssj2xp6vw4yaksyavq03497v33xfpdxss7"; depends=[Rcpp]; }; flood = derive2 { name="flood"; version="0.1.1"; sha256="0nlmjh2l7dij1aqd70hhj0m550knlin3am14azqkx4pacs1kir3p"; depends=[copula evd magrittr TLMoments]; }; flora = derive2 { name="flora"; version="0.3.4"; sha256="17drlfvvrndal4cf5nw20xb9viybagvb4vll1kxdrhvsvfz5yap6"; depends=[dplyr httr jsonlite stringdist]; }; - flow = derive2 { name="flow"; version="0.0.2"; sha256="0aa2nfk1i99mcsnfmziyfbsg4w1x58xnqzgwpyrx31yigrd20515"; depends=[htmlwidgets nomnoml rstudioapi styler webshot]; }; + flow = derive2 { name="flow"; version="0.1.0"; sha256="1d5cj0qbmx6cwzik83vb0vijryq4b93y5wwgm8k92wg3lgknzdj6"; depends=[here htmlwidgets lifecycle nomnoml rstudioapi styler webshot]; }; flower = derive2 { name="flower"; version="1.0"; sha256="1h2fvpjrvpbyrqb8hd51sslr1ibpwa7h9fiqy9anvf2yim5j11yq"; depends=[]; }; flowfield = derive2 { name="flowfield"; version="1.0"; sha256="1cx3i0w3xq781mmms4x20fshlf1i9bwxw9bxx562crix3fq3m50j"; depends=[]; }; flowr = derive2 { name="flowr"; version="0.9.11"; sha256="1cbbfrvgzqclvbhy20vjwgxbvnn3ljh0k1k54jf2si10bfw3zzi5"; depends=[diagram params readr whisker]; }; @@ -9498,7 +9525,7 @@ in with self; { fmpcloudr = derive2 { name="fmpcloudr"; version="0.1.5"; sha256="07fvmrprv0pka1wgp5ygcvv86jvn3h30xxkx44ssin15hfmank69"; depends=[dplyr httr jsonlite lubridate magrittr tidyr]; }; fmri = derive2 { name="fmri"; version="1.9.6"; sha256="1wh77xwpm8f9d9vky3r7vfmkik3hls008ifk8hkm2rq6i06jj53n"; depends=[aws metafor nlme]; }; fmriqa = derive2 { name="fmriqa"; version="0.3.0"; sha256="1z09nf1c305a78c129jvs21b9z91wyhazz41wrn4bimmhfhx7szv"; depends=[ggplot2 gridExtra imager optparse pracma RcppEigen reshape2 RNifti tidyr viridisLite]; }; - fmsb = derive2 { name="fmsb"; version="0.7.2"; sha256="1ylwj4385wg7rymx0m3kayyvrbil89wxb7phdl0fvi0xq2krkzhb"; depends=[]; }; + fmsb = derive2 { name="fmsb"; version="0.7.3"; sha256="1gi94xr0b1yk9xzwfprfafxi25yic1lcivd66p73n6iqfzdaimbk"; depends=[]; }; fmtr = derive2 { name="fmtr"; version="1.5.5"; sha256="0vxdcjr0azmcsq59gp31c1zkgcf2sbi5z8qmjcz0507sn81r73wf"; depends=[crayon Rcpp tibble]; }; focusedMDS = derive2 { name="focusedMDS"; version="1.3.3"; sha256="18s86dbbpyajscqr9frprf2vp1zif7vh4lw5m0cjskfc6gmsdp2p"; depends=[htmlwidgets]; }; foghorn = derive2 { name="foghorn"; version="1.4.2"; sha256="11riav36ncxybx4yrrrwrykg9xmh2fpp5m92zl9prhi7g0rllg6f"; depends=[clisymbols crayon curl httr jsonlite rlang rvest tibble xml2]; }; @@ -9516,9 +9543,10 @@ in with self; { foodingraph = derive2 { name="foodingraph"; version="0.1.0"; sha256="0v40yk7lx0zxvpd3vz48h5gzx8ds8v3l12i2r7v9safgfvip6fvn"; depends=[cowplot dplyr ggplot2 ggraph igraph labeling magrittr minerva rlang stringr tibble tidyr viridis]; }; foodweb = derive2 { name="foodweb"; version="1-0"; sha256="1zm2a87g9bkpz90j9lax28s5hq1w7ia28qqb6vnvr1d7a47g9zi9"; depends=[rgl]; }; foolbox = derive2 { name="foolbox"; version="0.1.1"; sha256="06lcr5v6bcqqxskrwdm16b46zq4h67x8bwqya88jxs5bgi5w0hj3"; depends=[magrittr rlang]; }; + footBayes = derive2 { name="footBayes"; version="0.1.0"; sha256="1q2xcrrw4x2jdvxr5q3l9lh0sfg3wjw06s9qzil11pb93h5l2ik6"; depends=[arm bayesplot dplyr extraDistr ggplot2 magrittr matrixStats metRology numDeriv reshape2 rstan tidyverse]; }; footballpenaltiesBL = derive2 { name="footballpenaltiesBL"; version="1.0.0"; sha256="1my67157frp4pxl84sb6dnb7rzp99g59mp9iwwv1s6wc391zfbsp"; depends=[]; }; footprint = derive2 { name="footprint"; version="0.1"; sha256="00m3jaxiacf9wxa0wg0qxhp6c0prbf2l5c2cid6anz8rc5b6angv"; depends=[airportr dplyr magrittr rlang]; }; - foqat = derive2 { name="foqat"; version="2.0.0"; sha256="0f4zakfj4f2x3sy0h048vbzx7bvr8jffz125ncd7yydhgxbl7v8v"; depends=[dplyr ggnewscale ggplot2 ggplotify gridExtra lmodel2 lubridate magrittr patchwork plyr reshape2 rvest scales stringr xml2]; }; + foqat = derive2 { name="foqat"; version="2.0.1"; sha256="1p607kiw04cq6jrpbmcmpaqilaa2c1mhvqz10fld01mz6k29f7p0"; depends=[dplyr ggnewscale ggplot2 ggplotify gridExtra lmodel2 lubridate magrittr patchwork plyr reshape2 rvest scales stringr xml2]; }; forImage = derive2 { name="forImage"; version="0.1.0"; sha256="1p8zfndvm7x7pnryphz944hgxcchvc6mwnr6ap15m0i6kwsh0nb4"; depends=[dplyr magrittr reticulate tibble]; }; forams = derive2 { name="forams"; version="2.0-5"; sha256="1fh3m9896ksv1h7b027yb955bzyv70yafhqvn5crkzalzk3jpb0s"; depends=[vegan]; }; forcats = derive2 { name="forcats"; version="0.5.1"; sha256="12d2nv2w15085jscgidmjdnr1ryymciflcmal6ldmgp2fkl9dyy4"; depends=[ellipsis magrittr rlang tibble]; }; @@ -9529,10 +9557,11 @@ in with self; { forecastHybrid = derive2 { name="forecastHybrid"; version="5.0.19"; sha256="1pg3wbmlagr01j3nikfh4dvh5lvbdfp7069wx9h9xsl7d4481ly1"; depends=[doParallel foreach forecast ggplot2 purrr thief zoo]; }; forecastML = derive2 { name="forecastML"; version="0.9.0"; sha256="01lqbmdmd6sk5xka19i9d466bzihxgp652v0kr13r82b591f67vq"; depends=[data_table dplyr dtplyr future_apply ggplot2 lubridate magrittr purrr rlang tibble tidyr]; }; forecastSNSTS = derive2 { name="forecastSNSTS"; version="1.3-0"; sha256="0p47x7ic2ib7znqbp8br4b2ci75f5w8x413z9g4n30m002p7irp1"; depends=[Rcpp]; }; + forecasteR = derive2 { name="forecasteR"; version="1.1.6"; sha256="1lqlmiwr34rim50y9vxinf23xi9gj0y6p1y1wp3vlfycdkd0lca5"; depends=[colourpicker config DT echarts4r forecast golem htmltools htmlwidgets lubridate rlang scales shiny shinyAce shinycustomloader shinydashboard shinydashboardPlus shinyjs stringr]; }; foreign = derive2 { name="foreign"; version="0.8-82"; sha256="1yw07yqzfm4w1h92ijyamrmf7rmkqxgamqfd74x7zv4vsn20dvgq"; depends=[]; }; forensic = derive2 { name="forensic"; version="0.2"; sha256="0kn8wn6p3fm67w88fbarg467vfnb42pc2cdgibs0vlgzw8l2dmig"; depends=[combinat genetics]; }; forensim = derive2 { name="forensim"; version="4.3"; sha256="1jhlv9jv832qxxw39zsfgsf4gbkpyvywg11djldlr9vav7dlh3iw"; depends=[tcltk2 tkrplot]; }; - forestControl = derive2 { name="forestControl"; version="0.2.1"; sha256="1m75s98bs8n3qad8gp6a333dh3mbi0rbbic9iwnsqyklzkhmx1nr"; depends=[dplyr magrittr purrr Rcpp tibble]; }; + forestControl = derive2 { name="forestControl"; version="0.2.2"; sha256="0g81ml12xhq2a868vlpsybpsqz7p4hn9jnxh3dvq6g4k1hc1292x"; depends=[dplyr magrittr purrr Rcpp tibble]; }; forestError = derive2 { name="forestError"; version="1.1.0"; sha256="1dk19sgx760ph464cya4gxb1i3rpnydnhrbqyb25jja0dryjapcm"; depends=[data_table purrr]; }; forestHES = derive2 { name="forestHES"; version="1.0-1"; sha256="05l04ly3l8xkdz3rnnrfa4y0wfmh1am2ixbz1vfarnqkc0zppwpj"; depends=[]; }; forestRK = derive2 { name="forestRK"; version="0.0-5"; sha256="0zm0q7bckmjl1j3yh5pw4r6rq64rfmzjvmvqniza5691jagjz60m"; depends=[ggplot2 igraph knitr mlbench partykit pkgKitten rapportools]; }; @@ -9541,7 +9570,7 @@ in with self; { forestmangr = derive2 { name="forestmangr"; version="0.9.4"; sha256="1zlp7lnawbfqw60552cwnh280spqj7p2qvn2xwz5y7wly2d7d4fm"; depends=[broom car dplyr FinCal ggdendro ggplot2 ggpmisc ggthemes gridExtra magrittr miniUI minpack_lm plyr purrr rlang scales shiny systemfit tibble tidyr]; }; forestmodel = derive2 { name="forestmodel"; version="0.6.2"; sha256="0pl9r8j2qd00b9kl585b4k54kic5fvzc56i8cn3hm5yp2hrrwyws"; depends=[broom dplyr ggplot2 rlang tibble]; }; forestplot = derive2 { name="forestplot"; version="2.0.1"; sha256="0bzwi6ws0qjq1pqiadssynbkxxd4zjp974jfdplmv16fcyszqhyi"; depends=[checkmate magrittr]; }; - forestploter = derive2 { name="forestploter"; version="0.1.1"; sha256="0flqxadq89bfbdck9b5lvbys87lcyq37jwhsfx6k5jvplm70vrxw"; depends=[gridExtra gtable]; }; + forestploter = derive2 { name="forestploter"; version="0.1.2"; sha256="1vqc1prlzgssc7ywvlgd7c6rysrmb9145fh9akhra6rs1pnrv9pf"; depends=[gridExtra gtable]; }; forestr = derive2 { name="forestr"; version="2.0.2"; sha256="1kz8f3x2dmsprj2r23gz61fpwg7n14nbjxr16x4cpixvnk427p94"; depends=[dplyr ggplot2 moments plyr tibble tidyr viridis]; }; forestry = derive2 { name="forestry"; version="0.1.0"; sha256="0q7m0mrig8z2b2z2fng58qlqa6g58xlhfzchil2dvjh6xf3qvsh8"; depends=[data_tree]; }; foretell = derive2 { name="foretell"; version="0.2.0"; sha256="18vi438n480gizfhnciw67gngvbjnmky19186b1wy75av7fgc1gp"; depends=[nloptr]; }; @@ -9552,7 +9581,7 @@ in with self; { formulaic = derive2 { name="formulaic"; version="0.0.8"; sha256="1nx6a73vw2hjbnqaw8x17ghhljd6z2avxv4arz3c3785pyayhg9k"; depends=[data_table]; }; formulops = derive2 { name="formulops"; version="0.5.0"; sha256="1mkpv5xjykrhgknq0gh4yg2a3j4xb8q2d6dh0wv8zd9h59hvrzda"; depends=[]; }; forplo = derive2 { name="forplo"; version="0.1.0"; sha256="15zkzq8vb6ydvic3r2lsna64vqlq12225cpdr7dsrfkn6kqjjzd5"; depends=[]; }; - forrel = derive2 { name="forrel"; version="1.3.0"; sha256="0dlp318dh77fwjcqyzx9ldwvcxa4xpwkpvnizgvbifnwxkggdj7j"; depends=[glue pedmut pedprobr pedtools ribd]; }; + forrel = derive2 { name="forrel"; version="1.4.1"; sha256="1328cbcnnpy3n8na2brxf2q5i3czkkiajri6zi5yfajwrb2vyg33"; depends=[glue pedmut pedprobr pedtools ribd]; }; forsearch = derive2 { name="forsearch"; version="1.0.0"; sha256="047iizf9pfgq292zkhkdwq44ij4kixvxd7d0qqyayckh3c1k9290"; depends=[Cairo ggplot2 Hmisc nlme tibble]; }; fortunes = derive2 { name="fortunes"; version="1.5-4"; sha256="109ly9kpfn6hy294ava8795wy5z9l1bnl98hhhv8kn9naf4camdg"; depends=[]; }; forward = derive2 { name="forward"; version="1.0.5"; sha256="0cc0s534s32b9ark2zazwqhgy0zsxb2p63r6503v82784rpqv2yv"; depends=[MASS]; }; @@ -9565,7 +9594,6 @@ in with self; { fpCompare = derive2 { name="fpCompare"; version="0.2.3"; sha256="1pyv52rvbqd5v6ns86pc119q019ps070bd819x7a98s4hmbf76zq"; depends=[]; }; fpa = derive2 { name="fpa"; version="1.0"; sha256="0kgpl9qq0l10h0vdd2f8vnir0kdylh1jvvv5z4d9ygj1pl9qywhk"; depends=[fields reshape]; }; fpc = derive2 { name="fpc"; version="2.2-9"; sha256="0f7sfmpcycr9y7cy5gasyjm2ardxa62kglqms92mcr68jrp01c19"; depends=[class cluster diptest flexmix kernlab MASS mclust prabclus robustbase]; }; - fpca = derive2 { name="fpca"; version="0.2-1"; sha256="13b102026xlfb7c2rb3xsqsymm7xpmaxppaafjkb5dx0b1lz0jrc"; depends=[sm]; }; fpcb = derive2 { name="fpcb"; version="0.1.0"; sha256="086060z6r79m527bb9ah6yk2z15xq8x27gyvbz23xbm6mhrxsa1y"; depends=[FNN]; }; fpeek = derive2 { name="fpeek"; version="0.1.2"; sha256="0kv46g21ndxchg3q8ynq7hjjkh6i2zlc21axn5y1jjzigrw047ii"; depends=[Rcpp]; }; fpest = derive2 { name="fpest"; version="0.1.1"; sha256="013r8295spm02j558aqvnrnbkg2g73gl5vi4lqzngbw8yr8qlkri"; depends=[]; }; @@ -9597,12 +9625,12 @@ in with self; { frbs = derive2 { name="frbs"; version="3.2-0"; sha256="0biv6j31qi0f4i063ygmbp6v6ws1nxijn5kyhg5sz1rnbr0msl28"; depends=[]; }; frechet = derive2 { name="frechet"; version="0.2.0"; sha256="1006mgy9avwkwy0666maac59xp4j27wq5yy3pwc3h1r05myxw379"; depends=[corrplot fdadensity fdapace Matrix osqp pracma]; }; fredr = derive2 { name="fredr"; version="2.1.0"; sha256="0073qh0drf1p38hc84m54n35hyza90m8zn48ihx3alxkiq1m8ijp"; depends=[httr jsonlite rlang tibble]; }; - free = derive2 { name="free"; version="1.0"; sha256="1cy9v4cfksnnzi4fx89kai3zdb8lpwawi04x4y58wh7322bb0w0j"; depends=[Rcpp RcppArmadillo]; }; + free = derive2 { name="free"; version="1.0.1"; sha256="0r9vd1d4pi19mnvdchx95axp0hiqs8lpgp0fn40dm89h5fd6zyb0"; depends=[Rcpp RcppArmadillo]; }; freealg = derive2 { name="freealg"; version="1.0-4"; sha256="0bv31pydjhqhfin4ydd49aqzsxn0zhhismm0l4ijabrrvkw3n1hc"; depends=[disordR mathjaxr partitions Rcpp]; }; freedom = derive2 { name="freedom"; version="1.0.1"; sha256="1mrdl2cqdm2c68lx7lyixgiqw6xzwnx9c8j5q4annhiz107i9i22"; depends=[]; }; freegroup = derive2 { name="freegroup"; version="1.1-3"; sha256="11v0ph0mhk8g9zwapcp2wgr1sbdwdqh7nhbrci87myapypdncqjc"; depends=[magic magrittr plyr]; }; freesurfer = derive2 { name="freesurfer"; version="1.6.8"; sha256="0ks6ms5vp38pykcg66w960nmfgq383iprrbbzw5dlx9xnrx4yhbh"; depends=[neurobase R_utils reshape2]; }; - freesurferformats = derive2 { name="freesurferformats"; version="0.1.16"; sha256="0aax9dimig3cn8mqnl8xdj9khs7fga08fx7vw9qkwrv4bnls8zvz"; depends=[pkgfilecache rmarkdown xml2]; }; + freesurferformats = derive2 { name="freesurferformats"; version="0.1.17"; sha256="125vmx9gw9czlp86c2byv1fdslzhjn8q0plgqnk065sjhbla46cn"; depends=[pkgfilecache rmarkdown xml2]; }; frenchCurve = derive2 { name="frenchCurve"; version="0.1.0"; sha256="1b8lkmhydz4jq8h5p117fwaygbsillzcfx0p7w0ljj8b8v57r6l9"; depends=[sp]; }; frenchdata = derive2 { name="frenchdata"; version="0.2.0"; sha256="13n0phncbxim9ak897hmjw1p7ph5wi3jn2m8hgmm3bywxbxcg1qz"; depends=[assertthat cli dplyr fs httr magrittr purrr readr rlang rvest stringr tibble tidyr]; }; freqdist = derive2 { name="freqdist"; version="0.1"; sha256="1pb45jabv9s3qa7v1isd5wm9b0g9p04q5h18spcaax8397s0d2fv"; depends=[]; }; @@ -9617,8 +9645,9 @@ in with self; { frequentdirections = derive2 { name="frequentdirections"; version="0.1.0"; sha256="0rmifh221c8z3cqyqg0bfxnih9f64hvv98jz44i6grnlablfwwgw"; depends=[ggplot2]; }; frequentistSSD = derive2 { name="frequentistSSD"; version="0.1.0"; sha256="0r2vy8n6d8c2vdijd0cyg9vv4m0w0a6m2piblky48c1wm2qznfd2"; depends=[survival]; }; fresh = derive2 { name="fresh"; version="0.2.0"; sha256="1787mm6w2s5x9scxy7r9cb77rgpmy4ngwkn4z8g3gs48mrab4bd9"; depends=[htmltools rstudioapi sass shiny]; }; + frictionless = derive2 { name="frictionless"; version="1.0.0"; sha256="17an6wxwb9qcj42rsm3311jx1f2d91fpq0d0831xswngc548bmp5"; depends=[assertthat dplyr glue httr jsonlite purrr readr yaml]; }; friends = derive2 { name="friends"; version="0.1.0"; sha256="164p9g07vq3xs2lgg250yvzca4b0mp81pqbnjfdkzcqh5hmahsan"; depends=[tibble]; }; - fritools = derive2 { name="fritools"; version="3.1.0"; sha256="0yfhz73v7zp6zrq8pyl57j8nmdaqx1giwyssx5l73p0jqjc6d528"; depends=[]; }; + fritools = derive2 { name="fritools"; version="3.2.0"; sha256="1kjzc97ivz95rvhs0jzfvyfvznkcgklc7f9xplbim3yfl07w2hsc"; depends=[]; }; frm = derive2 { name="frm"; version="1.2.2"; sha256="1dl0vca9r2dams99sc13pfpi0b3yb02x59f4c1jz07zz005c8l23"; depends=[]; }; frmhet = derive2 { name="frmhet"; version="1.1.3"; sha256="07sgsfhzrci8g1b0gicjfca1mgd8ppfqpkpp4q9bdxnjvdvlf45s"; depends=[]; }; frmpd = derive2 { name="frmpd"; version="1.1.0"; sha256="0irgqdr0vr8k408lsxcrjkjbjvqvmy5mnjw9c1ghs86isrp5mciz"; depends=[]; }; @@ -9631,22 +9660,21 @@ in with self; { frscore = derive2 { name="frscore"; version="0.1.1"; sha256="0x5hyjh3n28yanpgx4yb2afjlwknaa4dd5fsy857hbdm0wf2jz9v"; depends=[cna dplyr magrittr Rfast rlang]; }; fruclimadapt = derive2 { name="fruclimadapt"; version="0.4.4"; sha256="19siwjjcjh0kh2wpbabgzjwrfgg2al0g7d4z91wdcp3spwx308vk"; depends=[data_table lubridate tidyverse zoo]; }; fs = derive2 { name="fs"; version="1.5.2"; sha256="11qr3v0xn65vfhgcxl4l6yv48s4w0w3ldp3anpzc25vd3mwd3jim"; depends=[]; }; - fsMTS = derive2 { name="fsMTS"; version="0.1.5"; sha256="1vxj9wkzpbk44hby4fdyhj72748c65by612kpphs6vmgzmw4y471"; depends=[freqdom glasso lars mpmi randomForestSRC]; }; - fsbrain = derive2 { name="fsbrain"; version="0.5.2"; sha256="1vqj8x6wsaz89dl58nqhmz9vla0vjzdn8gzppkfggb44i2q1xm55"; depends=[data_table fields freesurferformats magick pkgfilecache reshape rgl squash viridis]; }; + fsbrain = derive2 { name="fsbrain"; version="0.5.3"; sha256="10xfc6b9wwadafqr8ndz9rkbi94ql4kywpb085b5k5yncmfcbq5m"; depends=[data_table fields freesurferformats magick pkgfilecache reshape rgl squash viridis]; }; fscaret = derive2 { name="fscaret"; version="0.9.4.4"; sha256="18fhyfl3f8syyc3g937qx87dmwbv7dray6b97p1s6lnssiv61gsw"; depends=[caret gsubfn hmeasure]; }; fsdaR = derive2 { name="fsdaR"; version="0.6-5"; sha256="0j6nvlp527b4g36jg6mcq8w2mc8p795q68d11yi41fvlcw7v6vym"; depends=[ggplot2 rJava rrcov]; }; fsia = derive2 { name="fsia"; version="1.1.1"; sha256="0id7cnswrqylgpwjil1zfn89ryrdpl20fim8x1srl8s1hm5bg35r"; depends=[]; }; fslr = derive2 { name="fslr"; version="2.24.1"; sha256="1psjqvjv8krlkj7dcfwygz563a4cpn7h21z330hxh5q10rwhabi8"; depends=[neurobase oro_nifti R_utils]; }; - fsn = derive2 { name="fsn"; version="0.1"; sha256="1a5vsrk9l19rh46kxrfmgcv07l0pr4zn1q2f0chivq43pwmfm194"; depends=[Rfast]; }; + fsn = derive2 { name="fsn"; version="0.2"; sha256="12n1v8nhfn5pjjsrp41wk848yw797wxa9anx9dm8rd278smrk01f"; depends=[Rfast]; }; fso = derive2 { name="fso"; version="2.1-1"; sha256="0hn2ypm0nwfbmnh9il78pi30x7gfmayfangqyh0d63ngyz40bvma"; depends=[labdsv]; }; fspe = derive2 { name="fspe"; version="0.1.0"; sha256="0cdl6749nqz2nmknn8mjxxxm8axix9iv2micviwg7fhynqhsffp1"; depends=[corpcor GPArotation psych]; }; fsr = derive2 { name="fsr"; version="1.0.1"; sha256="1h0ljb28nffjjjry93lsvw2i109g0mmjgdd335y7r3zgz1s34x2d"; depends=[dplyr e1071 FuzzyR ggplot2 lwgeom pso rlang sf stringr tibble]; }; - fst = derive2 { name="fst"; version="0.9.6"; sha256="08vbjr5fjrirmpl4ynmibgy6ph3fahfc7d213cwbzvhq2pdp3yqh"; depends=[Rcpp]; }; + fssemR = derive2 { name="fssemR"; version="0.1.8"; sha256="1rja69b6x5vc302nksh5m6ssp2lx8drv9gjnkv6j9xr3hd2407xi"; depends=[glmnet igraph MASS Matrix mvtnorm qpdf qtl Rcpp RcppEigen stringr]; }; + fst = derive2 { name="fst"; version="0.9.8"; sha256="0r96inwrr960m7wmc80603bw2vvvwab225bh9dq3lalwhy4yiis4"; depends=[fstcore Rcpp]; }; fstcore = derive2 { name="fstcore"; version="0.9.8"; sha256="1qicjwsm87wgjm5mxrsgi697fmcfz6wyqcxfgngwxrf8kq4awjsf"; depends=[Rcpp]; }; fsthet = derive2 { name="fsthet"; version="1.0.1"; sha256="0z6az1jcvdahgn97r6cpj1s6fn0lvr7j12gcw2r7wbpajrvyl5j6"; depends=[]; }; ftDK = derive2 { name="ftDK"; version="1.0"; sha256="1xs2rr2afjza97kpym5zkas3k78pilxjlh7lp1gc66banldr71g2"; depends=[dplyr httr pbapply purrr tibble]; }; ftExtra = derive2 { name="ftExtra"; version="0.3.0"; sha256="1aal3cwdp9gnc0gnigk7789rak3s6i5jav01d9z25gm977683b76"; depends=[dplyr flextable jsonlite magrittr purrr rlang rmarkdown stringr tibble tidyr tidyselect vctrs xfun yaml]; }; - ftnonpar = derive2 { name="ftnonpar"; version="0.1-88"; sha256="0df9zxwjpfc939ccnm1iipwhpf76b34v0x74nsi1mm1g927dfl0i"; depends=[]; }; ftrCOOL = derive2 { name="ftrCOOL"; version="2.0.0"; sha256="0jy0dhkf7hlrriz32abp0h52fw92i5k8x25bjqlzd0khyv2vhj0i"; depends=[]; }; fts = derive2 { name="fts"; version="0.9.9.2"; sha256="08pwhi19db173d4nsk5rl8xa8qmaddj4bn3cjxb8ql4kny59i57q"; depends=[BH zoo]; }; ftsa = derive2 { name="ftsa"; version="6.1"; sha256="0j8jr0sbvxfzqfy8va7axljp660jkpqwg9djbis9ikf4x9n9f7n9"; depends=[boot colorspace e1071 ecp evgam fda fdapace fGarch forecast glue KernSmooth LaplacesDemon MASS pcaPP pdfCluster psych rainbow ROOPSD sde strucchange vars]; }; @@ -9669,9 +9697,9 @@ in with self; { funchir = derive2 { name="funchir"; version="0.2.0"; sha256="1rj5khv1xcaaip5xh8kcsp2jgmbmnc9q5kwr46l4mxvxyndndi1k"; depends=[data_table]; }; functClust = derive2 { name="functClust"; version="0.1.6"; sha256="0mdfxvrx3wk497a9bbkwnzbm6hm2s4wqs3h09m3hj48ybpqmhz9i"; depends=[clusterCrit multcompView]; }; functional = derive2 { name="functional"; version="0.6"; sha256="120qq9apg6bf39n9vnp68db5rdhwvnj2vi12a8j8243vq8kqxdqr"; depends=[]; }; - functiondepends = derive2 { name="functiondepends"; version="0.2.1"; sha256="0i6ppm5xz1m3m29lvz4nqm31k33w18j8af160lalgc01i1n4n11c"; depends=[dplyr magrittr purrr stringr tibble tidyr tidyselect]; }; + functiondepends = derive2 { name="functiondepends"; version="0.2.3"; sha256="0p831i8l81dbrncmr69024gm5g14p0xiv7li0ljdlqnrbc0fj64n"; depends=[dplyr magrittr purrr stringr tibble tidyr tidyselect]; }; fundiversity = derive2 { name="fundiversity"; version="0.2.1"; sha256="11gz1h7mlb0880w3cv5sb4h6qpfs6az3vfhd3527s6sw43n87l29"; depends=[future_apply geometry Matrix vegan]; }; - fungible = derive2 { name="fungible"; version="1.99"; sha256="1hjngz3jbrcx0ri7054rbhcnhb3d1yf7mlb9m1ivdmpih8f5c3vj"; depends=[clue GPArotation lattice MASS mvtnorm nleqslv Rcsdp RSpectra]; }; + fungible = derive2 { name="fungible"; version="2.0"; sha256="1xwmw6d3lzq4b2n8amhllciq28x85wrcmd7mpxml3zn9las19wrx"; depends=[clue GPArotation lattice MASS mvtnorm nleqslv Rcsdp RSpectra]; }; funique = derive2 { name="funique"; version="0.0.1"; sha256="0p9k4nxjns1xid9vmslkaap0hm6yq6pbyvylgygd808if4q1z8k6"; depends=[]; }; funmediation = derive2 { name="funmediation"; version="1.0.1"; sha256="1h4jic73f7ywk2g1mkg188q0bq6x8sn9sm7jhr8gvrnmh167ajw7"; depends=[boot refund tvem]; }; funnelR = derive2 { name="funnelR"; version="0.1.0"; sha256="143lb048krgh8rkkz6sm8h464kdy62w29fvvyar795vqi10bb5fy"; depends=[ggplot2]; }; @@ -9680,7 +9708,7 @@ in with self; { funr = derive2 { name="funr"; version="0.3.2"; sha256="11mjd1ba9kwawh7k5py54mkq4g1df79d7qivan8fj11qfwfzm679"; depends=[]; }; funrar = derive2 { name="funrar"; version="1.4.1"; sha256="0xqccch59f8cz4a7ybjdr6k625bir5nsjrp4iyfirrb877d17m5z"; depends=[cluster]; }; funreg = derive2 { name="funreg"; version="1.2.2"; sha256="0dagzz5pl16l2jkkj11z41y68s75jxmyl46csda6vzlgjc7n4ji8"; depends=[MASS mgcv mvtnorm]; }; - funtimes = derive2 { name="funtimes"; version="8.1"; sha256="08vz05db6krrcppk0fd05n366isrqrmgwbp6y6c0n9rzbgav511k"; depends=[dbscan FNN igraph Jmisc Kendall Rdpack TDA]; }; + funtimes = derive2 { name="funtimes"; version="8.2"; sha256="15fhqjagarzfd1zicl684rlcy0rcifpl4wl1fs645nr8lq4y9ygg"; depends=[dbscan FNN igraph Jmisc Kendall Rdpack]; }; furniture = derive2 { name="furniture"; version="1.9.10"; sha256="02dqs0b0vpn2chqhjylanq9xdrj2hw7ynd6xv94gkfk8syz3dqda"; depends=[dplyr knitr]; }; furrr = derive2 { name="furrr"; version="0.2.3"; sha256="001p2yhznrpnrjvdcmf2h3wpgdnw01wnqgid7wbq8bhavhi3888a"; depends=[ellipsis future globals lifecycle purrr rlang vctrs]; }; fusen = derive2 { name="fusen"; version="0.3.0"; sha256="11rsk5yzdzdak24knpxp38p83j0qhbhqc5skfvpmdwncyzf6fv5r"; depends=[attachment cli desc devtools glue here magrittr parsermd roxygen2 stringr tibble tidyr usethis]; }; @@ -9691,19 +9719,18 @@ in with self; { futile_options = derive2 { name="futile.options"; version="1.0.1"; sha256="0w15agpi88y3qkv6fl72zy2pzyplzgvnj41a4ixhg64mw1sck73s"; depends=[]; }; futile_paradigm = derive2 { name="futile.paradigm"; version="2.0.4"; sha256="14xsp1mgwhsawwmswqq81bv6jfz2z6ilr6pmnkx8cblyrl2nwh0v"; depends=[futile_options RUnit]; }; futility = derive2 { name="futility"; version="0.4"; sha256="0zjb87brz7pkx3nq3q30y69cmcxpqqsra447p60qh7005kgr9vx4"; depends=[]; }; - future = derive2 { name="future"; version="1.23.0"; sha256="1y5qzpsg0r2dccynyybbb2ngxbl1y3phs1dq2jj3f2bwhc7chsfq"; depends=[digest globals listenv parallelly]; }; + future = derive2 { name="future"; version="1.24.0"; sha256="0xmj17fq9paww796490bmakv6pcvrzk15i8mzhxk1mp9l0mj32vv"; depends=[digest globals listenv parallelly]; }; future_apply = derive2 { name="future.apply"; version="1.8.1"; sha256="1ix61bfbk43pwnjb0wk8lkfgdsy5zi8svk74gar5nrl90b5w6nqd"; depends=[future globals]; }; future_batchtools = derive2 { name="future.batchtools"; version="0.10.0"; sha256="1ly98h2g7wpfxp2r8vl1hy7wqqgwgawjagz0m2iczjmcj4ix6avk"; depends=[batchtools future]; }; future_callr = derive2 { name="future.callr"; version="0.7.0"; sha256="0y5x2xz29j7aidk3c1iby3dk23gpxmgzp4f5z5bdgd1w0n4jslg4"; depends=[callr future]; }; future_tests = derive2 { name="future.tests"; version="0.3.0"; sha256="1ssr0sd9h10151m5iaad17zqii7d18nnszq2svj0i8izk83xhrik"; depends=[cli crayon future prettyunits sessioninfo]; }; futureheatwaves = derive2 { name="futureheatwaves"; version="1.0.3"; sha256="122b2z86bzxfch67y6cpq8wj62mw0dgkzbmnpwi247kdx7w5mw1f"; depends=[data_table dplyr ggplot2 ggthemes leaflet Rcpp stringr tidyr]; }; fuzzr = derive2 { name="fuzzr"; version="0.2.2"; sha256="1cwq7a5j6lzrlz9dw3hsfap988rh1kkgf03yni7c33zl69xp5w77"; depends=[assertthat progress purrr]; }; - fuzzyFDR = derive2 { name="fuzzyFDR"; version="1.0"; sha256="0zd8i9did0d9gp42xjmwrccm32glabvvy08kl8phhwb1yaq53h7w"; depends=[]; }; fuzzyRankTests = derive2 { name="fuzzyRankTests"; version="0.4"; sha256="04841fh4nf7qriqk0b2ny943bji60bj42j8czg056d2dza4q4039"; depends=[]; }; fuzzySim = derive2 { name="fuzzySim"; version="3.7"; sha256="0m37fgqiy025db5ciz8lb2a8132iprn6fssy1bpingw3nb88r3vp"; depends=[modEvA]; }; fuzzyforest = derive2 { name="fuzzyforest"; version="1.0.8"; sha256="0sb7qia01a5h6p12riq6vdq9likmqb6i949axsxszy5sf1zk50v5"; depends=[doParallel foreach ggplot2 mvtnorm randomForest]; }; fuzzyjoin = derive2 { name="fuzzyjoin"; version="0.1.6"; sha256="0s5rhqz8vih4za3a8k1k7i3gq8hj0w7bqnakw40k6mg87jvyzsj7"; depends=[dplyr geosphere purrr stringdist stringr tibble tidyr]; }; - fuzzyreg = derive2 { name="fuzzyreg"; version="0.5.2"; sha256="1ppgyavkq8nys6fs9is7x08kclaa9g4h04a55bdkk6jjm36if914"; depends=[limSolve quadprog]; }; + fuzzyreg = derive2 { name="fuzzyreg"; version="0.6"; sha256="1v100flbnw3mjmakgswj0zfla2rm0s0vpg8w8v7j1lr9sfjz4s7c"; depends=[limSolve quadprog]; }; fuzzywuzzyR = derive2 { name="fuzzywuzzyR"; version="1.0.5"; sha256="1g73xivxyh5fvppccgnxhgar6jsl6zsr2djkg0bhh10i633l56ia"; depends=[R6 reticulate]; }; fwi_fbp = derive2 { name="fwi.fbp"; version="1.7"; sha256="1wk9cr0kk6zkbf111bv87n7b1wwx1qrsbjxydvbjvy8bgz0nfa62"; depends=[]; }; fwildclusterboot = derive2 { name="fwildclusterboot"; version="0.7"; sha256="1rhaisq2x9skhlils9iry7x8xzsi59pp6i9whg6jrjphgz96976f"; depends=[collapse dqrng dreamerr Formula generics gtools Matrix Matrix_utils Rcpp RcppEigen]; }; @@ -9735,7 +9762,7 @@ in with self; { gTests = derive2 { name="gTests"; version="0.2"; sha256="1h1sd8mrzcniq7rx7frdlxwpnsn8lifng1x99fqq703hs3znl1yq"; depends=[ade4]; }; gWQS = derive2 { name="gWQS"; version="3.0.4"; sha256="1yhbcmznii3n2sbw0z2rw1sdn0zlk5v2z7ww3nl7rn005g4q04hi"; depends=[broom cowplot dplyr future future_apply ggplot2 ggrepel kableExtra knitr MASS Matrix nnet plotROC pscl reshape2 rlist]; }; gWidgets2 = derive2 { name="gWidgets2"; version="1.0-9"; sha256="1ifljpdazzmwf3mgkg9g76365n2cmw8dd3da161fpvw84xxyznfl"; depends=[digest]; }; - gWidgets2tcltk = derive2 { name="gWidgets2tcltk"; version="1.0-7"; sha256="0w7l3zrmi5y3vxgccgx26r4296wb2kqylv68qnqqpdypd0413374"; depends=[digest gWidgets2 memoise]; }; + gWidgets2tcltk = derive2 { name="gWidgets2tcltk"; version="1.0-8"; sha256="02ic4avpa33dnqsnm1mzg7ci1psngk1p169pqf259szf6v39qf8h"; depends=[digest gWidgets2 memoise]; }; gadget2 = derive2 { name="gadget2"; version="2.3.7"; sha256="1p7jpwy65gdl6kli1h2m9yi5p5ah1vm23xs03sm9l42fcbn7ffdw"; depends=[]; }; gafit = derive2 { name="gafit"; version="0.5.1"; sha256="160z3cv22prf7118447dla9g1gimwkfad8zdil3fg8n4l22rk51a"; depends=[]; }; gaiah = derive2 { name="gaiah"; version="0.0.4"; sha256="1ibsbmmpagr7ix1c3bszrglqx95w44qyfy80vcq3w2dprs8vrrw6"; depends=[dplyr geosphere magrittr maptools raster rlang sp]; }; @@ -9764,8 +9791,9 @@ in with self; { gamlss_countKinf = derive2 { name="gamlss.countKinf"; version="3.5.1"; sha256="1xalp909gxxhyhh4chlr1ssyfhydhw1w3szzbynajji98576zaqv"; depends=[gamlss gamlss_dist]; }; gamlss_data = derive2 { name="gamlss.data"; version="6.0-2"; sha256="07mpdl4h9rwmnpl9jmsn6ig8ji11an6pyjfsvg62h2alapwbdcyv"; depends=[]; }; gamlss_demo = derive2 { name="gamlss.demo"; version="4.3-3"; sha256="01p6abppwbnh2a2ks1g08z4iwq2fxf125y9s4qzssybsn76a3gf3"; depends=[gamlss_dist gamlss_tr rpanel]; }; - gamlss_dist = derive2 { name="gamlss.dist"; version="6.0-1"; sha256="0m41n7zf7m0mh1w9ql70wqnzsf2f013ql699im7zmp6fdggb8qxm"; depends=[MASS]; }; + gamlss_dist = derive2 { name="gamlss.dist"; version="6.0-3"; sha256="1gqjr419v8z2ygh0h1xz7bipnsbp820njzwq7z3r9f41rn1ym47c"; depends=[MASS]; }; gamlss_foreach = derive2 { name="gamlss.foreach"; version="1.1-3"; sha256="0q9r92q21miisarbgvjdlqy6mp4b76ns49fw09zx8xypg74m2kl9"; depends=[doParallel foreach gamlss gamlss_data gamlss_dist glmnet]; }; + gamlss_ggplots = derive2 { name="gamlss.ggplots"; version="1.0-0"; sha256="0z19jvgan08jijijcx5aswq2c4c5pbdyhhgb9idvhv7bir5qim06"; depends=[ellipse gamlss gamlss_dist gamlss_foreach ggplot2 ggridges]; }; gamlss_inf = derive2 { name="gamlss.inf"; version="1.0-1"; sha256="0m091zxjm5wvhm6mzbpzkr275n3qnlb3v4099k0a1jymahk4w7vr"; depends=[gamlss gamlss_dist]; }; gamlss_lasso = derive2 { name="gamlss.lasso"; version="1.0-1"; sha256="03c8k6hl23ag98dihznfz1h0qc3pwxbnpv58pvmx3xbb3lipfjfb"; depends=[gamlss glmnet lars Matrix]; }; gamlss_mx = derive2 { name="gamlss.mx"; version="6.0-0"; sha256="0b06nb6nq36ay0p5z57j5d4hrly5917wcsal7986mp1270iwnpip"; depends=[gamlss gamlss_dist nnet]; }; @@ -9779,8 +9807,8 @@ in with self; { gamma = derive2 { name="gamma"; version="1.0.1"; sha256="1m2wxqprfxb51fih5f9l4s0lk42gyglbgvhfxc0cm9n7pn3dhprl"; depends=[ggplot2 IsoplotR rlang rxylib]; }; gamreg = derive2 { name="gamreg"; version="0.3"; sha256="1svrgbb8qdy2hzpq1g38v2lzmlbrn7qljix827biqzwgiajy69gg"; depends=[doParallel foreach glmnet Rcpp RcppArmadillo robustHD]; }; gamsel = derive2 { name="gamsel"; version="1.8-2"; sha256="1w1z2g0njsfv1ah6w3zw4lcgnaxask5mgykb204jzp6hpnc1a6cb"; depends=[foreach mda]; }; - gamselBayes = derive2 { name="gamselBayes"; version="1.0-1"; sha256="02rnamzfsmkk7hqm334jydybn9yv35f6iz406yk6xwfjz6wxhgh1"; depends=[Rcpp RcppArmadillo]; }; - ganGenerativeData = derive2 { name="ganGenerativeData"; version="1.2.0"; sha256="1ha7sf69ys8gz3fv1k3h32qr6cfjvrirkx0rcyq7pscxychwslca"; depends=[Rcpp tensorflow]; }; + gamselBayes = derive2 { name="gamselBayes"; version="1.0-2"; sha256="1dqxc7g529lkdk2lvn3ls4gxij7djs5xycrzlw49wf79pns2s5cc"; depends=[Rcpp RcppArmadillo]; }; + ganGenerativeData = derive2 { name="ganGenerativeData"; version="1.3.3"; sha256="07hdvch67c4liqb9f01j3aflivgpzgxdsg16zvvhwbyzch94xmv2"; depends=[Rcpp tensorflow]; }; ganalytics = derive2 { name="ganalytics"; version="0.10.7"; sha256="03jf7325cgg5p6lzcrzzzx0b40vf3l5vhw95lih098kpmlr1zadf"; depends=[assertthat googleAnalyticsR httpuv httr jsonlite lazyeval lubridate plyr R6 rvest scales selectr stringr tibble XML xml2]; }; gap = derive2 { name="gap"; version="1.2.3-1"; sha256="1rw93dnv3id64al46iybyznnvprv871qa4lnwdx18x8ym66fafil"; depends=[]; }; gap_datasets = derive2 { name="gap.datasets"; version="0.0.4"; sha256="1zlxm3nh1b1mqb94fq2b7sc7v99m9ywz7bz9lz5bhwblk5fzmjii"; depends=[]; }; @@ -9792,9 +9820,9 @@ in with self; { garchx = derive2 { name="garchx"; version="1.3"; sha256="0fpanzl6nfq6dar5chmqqfndb3w01mcypkhj0ya6v3d77m02b5mf"; depends=[zoo]; }; gargle = derive2 { name="gargle"; version="1.2.0"; sha256="0fypj70c1fjmvs57birik76wfx8a2fs4gzicbb52k57i6clwlijd"; depends=[cli fs glue httr jsonlite rappdirs rlang rstudioapi withr]; }; gargoyle = derive2 { name="gargoyle"; version="0.0.1"; sha256="0lsjplfrc047lb3zjfsc8wl47kll7d85v824k7zlr0n34xbbypq7"; depends=[attempt shiny]; }; - garma = derive2 { name="garma"; version="0.9.10"; sha256="1a6j1ym4rn4bvnh6b17gczg9x7f8gvmjw094694smkw0js5v7ig8"; depends=[BB crayon dfoptim FKF forecast GA ggplot2 lubridate nloptr pracma pso Rsolnp signal tswge zoo]; }; + garma = derive2 { name="garma"; version="0.9.11"; sha256="05jhac1cm82xjpz1dnwp7xcs58b3lxbzh4wmr4z7hkn5jdh3gsv5"; depends=[BB crayon dfoptim FKF forecast GA ggplot2 lubridate nloptr pracma pso Rsolnp signal tswge zoo]; }; garray = derive2 { name="garray"; version="1.1.2"; sha256="0s2dgi556x9jnhafvzz4qkxdbq9dm12gsvsqd2g9iy3468fx9flq"; depends=[]; }; - gaselect = derive2 { name="gaselect"; version="1.0.9"; sha256="089gyllcmq5rgf5yffclifc7rc8rmq4wk1dhznigxkij4zap67hx"; depends=[Rcpp RcppArmadillo]; }; + gaselect = derive2 { name="gaselect"; version="1.0.10"; sha256="14gz6429hap8gj7is0p9qigdzn1zzyqh1dykrpk4wvhqbid8ir73"; depends=[Rcpp RcppArmadillo]; }; gasfluxes = derive2 { name="gasfluxes"; version="0.4-4"; sha256="0gi0zk0h5rw75n6znada0cwa9qzy8higsiiqwgdm3q827j1x8iva"; depends=[AICcmodavg data_table MASS sfsmisc]; }; gasper = derive2 { name="gasper"; version="1.1.1"; sha256="10kl5d8lm2jvqrfk0qliyb3afmk9bhjm5zvs4g31zpa3icbz9r2p"; depends=[ggplot2 Matrix Rcpp RcppArmadillo RSpectra]; }; gastempt = derive2 { name="gastempt"; version="0.5.4"; sha256="02b35y0sq0piq5p8k5fviymqyqx1c2k793pm7j79xymmpzf8f52r"; depends=[assertthat BH dplyr ggplot2 nlme Rcpp RcppEigen RcppParallel rstan shiny StanHeaders stringr tibble utf8]; }; @@ -9803,7 +9831,7 @@ in with self; { gatepoints = derive2 { name="gatepoints"; version="0.1.4"; sha256="0gwyrkxn4xd79cl60xa312k6nz17mdjdiym65dq7s2384fa80wbm"; depends=[]; }; gauseR = derive2 { name="gauseR"; version="1.1"; sha256="0jlbaylglyza6hlf62g3z0n349zlzlhx6g4jwdzg8b2sh4c3c9yn"; depends=[deSolve]; }; gaussDiff = derive2 { name="gaussDiff"; version="1.1"; sha256="0fqjdxp2ibbami75ba16d02dz4rz5sk8mni45di9anydx44g9d45"; depends=[]; }; - gausscov = derive2 { name="gausscov"; version="0.1.4"; sha256="0y46whvzlsck6nlbxjsdv8fj94g622pqqczgzbc7nxj2ylpgbrj9"; depends=[]; }; + gausscov = derive2 { name="gausscov"; version="0.1.5"; sha256="0628bwazanqp8zkci93nyaa7hqwdwwlbcq4mwmkgf6xkbqmi00z8"; depends=[]; }; gaussfacts = derive2 { name="gaussfacts"; version="0.0.2"; sha256="095x7k7m7sy1gqkbm6wiqn26252dclz62sbnkv6cjvmbdxajl7m9"; depends=[]; }; gaussplotR = derive2 { name="gaussplotR"; version="0.2.5"; sha256="0amkgzgh6764ri30210nhbi3wcll3248fmkpclx010dxc3hllfdx"; depends=[ggplot2 metR rgl viridisLite]; }; gaussquad = derive2 { name="gaussquad"; version="1.0-2"; sha256="0bcvkssmwwngcd4cnv924n9h3c8z1w3x9c9bkwn5jbz9zyv1lfms"; depends=[orthopolynom polynom]; }; @@ -9816,7 +9844,7 @@ in with self; { gbm = derive2 { name="gbm"; version="2.1.8"; sha256="1h9f4ww9yc3nsvghgr2q7jjrlz29ibabxjbax1sk5wmqh2wy6pbx"; depends=[lattice survival]; }; gbm_auto = derive2 { name="gbm.auto"; version="1.5.0"; sha256="03fn5kr7pl1wzmmw6k86v2yv0a3l6pwyggvvdxsqnamd29jm5h54"; depends=[beepr dismo gbm mapplots maptools raster rgdal rgeos sf shapefiles]; }; gbm2sas = derive2 { name="gbm2sas"; version="2.1"; sha256="0ssjlv849vssmncn01ccpp2myqib5f3g88g0d4rqma2z0ivdpk23"; depends=[gbm]; }; - gbmt = derive2 { name="gbmt"; version="0.1.2"; sha256="1jk04wjykxb89b9m7ppyl6hp4z00f4vbmsrhisvzz184bwghigdf"; depends=[Matrix]; }; + gbmt = derive2 { name="gbmt"; version="0.1.3"; sha256="10dyghrxjd9ddgk7gp2af8a46skzb2m9vazr9s216r20257ijd13"; depends=[Matrix]; }; gbp = derive2 { name="gbp"; version="0.1.0.4"; sha256="0awg724gsfwlb0fjcvw0450qdsk4m8x8is16pj5c8fx6nc8rn8bv"; depends=[data_table magrittr Rcpp RcppArmadillo rgl]; }; gbs2ploidy = derive2 { name="gbs2ploidy"; version="1.0"; sha256="0gdjfqs9ccyaw7vi22wbyc742n1badr5ypr08g6rvi8ka5lmx836"; depends=[MASS rjags]; }; gbts = derive2 { name="gbts"; version="1.2.0"; sha256="1v8x4dnja8va28rjznyqa6js9wazndijasb95lfj2qwhxhgf5h65"; depends=[doParallel doRNG earth foreach gbm]; }; @@ -9834,7 +9862,7 @@ in with self; { gcookbook = derive2 { name="gcookbook"; version="2.0"; sha256="11g1q187l4j31b6cdzdx5z3s14z3s09l7ynl36pzzn9j19l8cmrc"; depends=[]; }; gdalUtilities = derive2 { name="gdalUtilities"; version="1.2.0"; sha256="0nxnw9azlml13a6rqhxjrwq8v7fb2pjcb07dp5r2p5bzyzvldm7a"; depends=[sf]; }; gdalUtils = derive2 { name="gdalUtils"; version="2.0.3.2"; sha256="0krapdy50nd5dvcdflz39dzxpig3zklng3hgxavqg2nvwazalvsc"; depends=[foreach R_utils raster rgdal sp]; }; - gdalcubes = derive2 { name="gdalcubes"; version="0.5.1"; sha256="15d17if1513pylqbnv2yqy3i9p6m7x8frw5kjqx1jil9xck55iil"; depends=[jsonlite ncdf4 Rcpp RcppProgress]; }; + gdalcubes = derive2 { name="gdalcubes"; version="0.6.0"; sha256="05hgnplbps3kk7p19mf7j0a3dlf7061yxi2sq9p9ydaywav0z4ji"; depends=[jsonlite ncdf4 Rcpp]; }; gdata = derive2 { name="gdata"; version="2.18.0"; sha256="0zwdj7lscgxr8r62ii8hbdh4mb7sa9w4f5nv32zzrxdvymcpya2b"; depends=[gtools]; }; gde = derive2 { name="gde"; version="0.2.0"; sha256="1xrncdmidzz9dv51bnbcrdh92im0lr97xi4rgb30p5sfxc4axml9"; depends=[data_table dplyr DT ggplot2 httr jsonlite leaflet progress R_utils readr RSQLite shiny shinycssloaders shinyWidgets stringr XML]; }; gdiff = derive2 { name="gdiff"; version="0.2-2"; sha256="0hg9mf3qyg19wwpiv3lz2z1000jw73s2pwb8y8hjgpv69wwsskfi"; depends=[magick pdftools]; }; @@ -9843,11 +9871,11 @@ in with self; { gdns = derive2 { name="gdns"; version="0.5.0"; sha256="1bicimkxsyfg9yqaikapwlv8x9xdvsb00fqnfka07i6b63109sxh"; depends=[httr jsonlite magrittr stringi tinytest]; }; gdpc = derive2 { name="gdpc"; version="1.1.2"; sha256="0g1mnxm78n928g7qjf0w7jzfm27z6mvz5p1rm25mxv7wsif5m6s6"; depends=[doParallel foreach Rcpp RcppArmadillo xts zoo]; }; gds = derive2 { name="gds"; version="0.1.1"; sha256="0gwq0k80rnbg4ibz6dz8sk6hqaklrdbv4vzv8zyk74am3aqipn20"; depends=[]; }; - gdtools = derive2 { name="gdtools"; version="0.2.3"; sha256="1p3ip0qwpg8f63jfx0b8vbac6l20ddid8xvxzkfi6i858pybnawp"; depends=[Rcpp systemfonts]; }; + gdtools = derive2 { name="gdtools"; version="0.2.4"; sha256="0a1hqg5b484ji4g9dy0zi06wn9w7pk6hiy5ljzc1zgj9mbhlr21j"; depends=[Rcpp systemfonts]; }; gdxdt = derive2 { name="gdxdt"; version="0.1.0"; sha256="1yrjixq4srmaiy5iaprix4096yhf3ldyklgjag4kxd3l5acwap4h"; depends=[data_table]; }; gear = derive2 { name="gear"; version="0.3.4"; sha256="0ibn2kr0rjj546cbcqhr6x69s25xh7si5fri59055j42g62mdnxy"; depends=[autoimage optimx Rcpp]; }; geckor = derive2 { name="geckor"; version="0.2.0"; sha256="06infn0icgsa10szsc8bqams57swx6a4ch3a1n2a68rp8q2f6lw2"; depends=[curl dplyr httr jsonlite knitr lifecycle magrittr rlang tibble tidyr tidyselect]; }; - gee = derive2 { name="gee"; version="4.13-20"; sha256="167pzgnmj4cjc41ykps1mfwi6s7y32zxyycn5z17vn4v0pp4q0ak"; depends=[]; }; + gee = derive2 { name="gee"; version="4.13-22"; sha256="1wbwn7bjqz09l6clh43dy3x5qgv9b9wwn7xnfw9fkkrhn6rvc3rw"; depends=[]; }; geeCRT = derive2 { name="geeCRT"; version="0.1.1"; sha256="1dwll5k99mj1a6nakxzihk87dvnqfsymly7kn1b8wkrfpljhrj4v"; depends=[MASS mvtnorm rootSolve]; }; geeM = derive2 { name="geeM"; version="0.10.1"; sha256="1r9zyjv7r7r7avdqi54dvczf971frz8pgrs1a04kan5mh4ls6xpy"; depends=[Matrix]; }; geeasy = derive2 { name="geeasy"; version="0.1.1"; sha256="1b874hacl0hhd16yfaag3kpqrc0336mmkzja0pa3gf7zj8d6n777"; depends=[geeM geepack ggplot2 lme4 Matrix MESS]; }; @@ -9880,7 +9908,6 @@ in with self; { geneExpressionFromGEO = derive2 { name="geneExpressionFromGEO"; version="0.9"; sha256="15dvx2f4nsmw1mgjfpcdcfnx8335fd043xb4hdnqcbjzf9h228bp"; depends=[annotate Biobase BiocManager GEOquery markdown R_utils xml2]; }; geneHummus = derive2 { name="geneHummus"; version="1.0.11"; sha256="1m6yyjsvmn3w87cw4da8js5vi74k5y739gxdx1yscx1n50bc3m34"; depends=[curl dplyr httr rentrez stringr]; }; geneListPie = derive2 { name="geneListPie"; version="1.0"; sha256="0z2gawfzhm05dafj4zlj6ifmf0dy7p1hrpa59lzxrnrc0wr6laji"; depends=[]; }; - geneNetBP = derive2 { name="geneNetBP"; version="2.0.1"; sha256="0sp1chyln5k2zsq7cdhvrqxwr2nhrll1pdl1l5g6fd4gjl2m1nwk"; depends=[bnlearn ggm gRain graph igraph Rgraphviz scales]; }; geneSignatureFinder = derive2 { name="geneSignatureFinder"; version="2014.02.17"; sha256="1s9jj87wnzzgm9hnws09yhrxdlb6jw56i3ddwznvmh8vpzrspv4h"; depends=[class cluster survival]; }; genekitr = derive2 { name="genekitr"; version="0.5.3"; sha256="1znbxgfhq652gxl75if0gzk1n7bclacazwjh5vn97cmm78kkm20k"; depends=[clusterProfiler dplyr ggplot2 rlang stringi stringr tibble tidyr VennDiagram]; }; genemodel = derive2 { name="genemodel"; version="1.1.0"; sha256="1x6n6k9ifv2swhyrghvm6fsz5vh85cdik8225175i9msvmkh928n"; depends=[stringr]; }; @@ -9892,6 +9919,7 @@ in with self; { generics = derive2 { name="generics"; version="0.1.2"; sha256="162q9hdsnfcwjj255ahbi6v9vnyynvda7gb75p721y28j5xb7sk3"; depends=[]; }; genero = derive2 { name="genero"; version="0.1.0"; sha256="0akwwy5xbh7s40v8dr1zr7jfglv0iyh4zn0sb0rnz4r57qr6nh8w"; depends=[]; }; genesysr = derive2 { name="genesysr"; version="1.0.0"; sha256="05jp8z7313r5wi9a5yw7fh198l7nd2ywzwg4f23yp4kfrkkgawn5"; depends=[dplyr httr jsonlite]; }; + geneticae = derive2 { name="geneticae"; version="0.3.0"; sha256="1f3ixsmpn87cjrbmwrlzqjxf29vxym6xq8dkgl40zzr7hp628an7"; depends=[bcv calibrate dplyr GGEBiplots ggforce ggplot2 MASS matrixStats missMDA pcaMethods prettydoc reshape2 rrcov scales tidyr]; }; genetics = derive2 { name="genetics"; version="1.3.8.1.3"; sha256="0lljxvz7nc6y2z303icphar2niir0i407w5cyhy2pwspd9gwkwpy"; depends=[combinat gdata gtools MASS mvtnorm]; }; genie = derive2 { name="genie"; version="1.0.5"; sha256="07w6rf4a3d34j7dwz9zcxshg2sk1cd5v59xs3jxph17c9gga0nlq"; depends=[genieclust Rcpp]; }; genieclust = derive2 { name="genieclust"; version="1.0.0"; sha256="1gbbblr5yv686llych5cj9jc8vc57y53qknzld5z51za9aw6azn3"; depends=[Rcpp]; }; @@ -9900,7 +9928,7 @@ in with self; { geniusr = derive2 { name="geniusr"; version="1.2.0"; sha256="04h0a61ngs0cmjf23imx76bm82dzkp4q4j31h3xlic05dx2lvyan"; depends=[curl dplyr httr purrr rvest stringr tibble xml2]; }; genlasso = derive2 { name="genlasso"; version="1.5"; sha256="07f0gqvngiyd3x01qxbqz7xrz10ck1cbypp51ldg8lg8ln1zw76y"; depends=[igraph Matrix]; }; genlogis = derive2 { name="genlogis"; version="1.0.0"; sha256="01av5invhviii7adqihh10ib47rjzwfsqdgw3lfg1c72kzrqywgr"; depends=[distr doParallel foreach ggplot2 manipulate]; }; - geno2proteo = derive2 { name="geno2proteo"; version="0.0.3"; sha256="1q054ai42f5gmrj791abj02f663zs7ymdh3pfs3b2lq6i4w9s2fb"; depends=[BiocGenerics GenomicRanges IRanges R_utils RUnit S4Vectors]; }; + geno2proteo = derive2 { name="geno2proteo"; version="0.0.5"; sha256="0aaxjgl037xmxdni03vrmlk444bpmw0c170ai8ijiyhy3j6xi8hk"; depends=[BiocGenerics GenomicRanges IRanges R_utils RUnit S4Vectors]; }; genoPlotR = derive2 { name="genoPlotR"; version="0.8.11"; sha256="01qn81nsdk3s150gqwisb7xnm4hq5sfzd2zrzpn9kj0rigzgf9zi"; depends=[ade4]; }; genodds = derive2 { name="genodds"; version="1.1.0"; sha256="1qsl134grmpk3yvgg106kawrx7g423jqlqgg9r2r46ry31i3hvhv"; depends=[Rcpp]; }; genogeographer = derive2 { name="genogeographer"; version="0.1.19"; sha256="0q56ysv5333i27iv1gmd9ilbgn3rw8sb9yq7z76gmn1fak5aqci8"; depends=[dplyr DT forcats ggplot2 knitr leaflet magrittr maps purrr readr rio rlang rmarkdown shiny shinycssloaders shinyjs shinyWidgets tibble tidyr]; }; @@ -9943,9 +9971,9 @@ in with self; { geojsonR = derive2 { name="geojsonR"; version="1.1.0"; sha256="0yqmz5snl5mpkbp2m5nddvqy7y72kcpgzy3d5b55l4sfzh7wfg4d"; depends=[R6 Rcpp RcppArmadillo]; }; geojsonio = derive2 { name="geojsonio"; version="0.9.4"; sha256="13lzc5hcs84gs1qnyi7lvy3yq1jz68jibmnww04lb91920msdxjv"; depends=[crul geojson geojsonsf jqr jsonlite magrittr maptools readr rgeos sf sp V8]; }; geojsonlint = derive2 { name="geojsonlint"; version="0.4.0"; sha256="0l6xlf6l9shyvdd2ghkhcgbkxpmycapfpxakzbvd92j1x8dmr9az"; depends=[crul jsonlite jsonvalidate V8]; }; - geojsonsf = derive2 { name="geojsonsf"; version="2.0.1"; sha256="1gxzi0wqmrif6bkw7z21aa2j8i0bd7a5nyyrkjiybv7v7d1l1ps2"; depends=[geometries jsonify rapidjsonr Rcpp sfheaders]; }; + geojsonsf = derive2 { name="geojsonsf"; version="2.0.2"; sha256="1fj8jazpyjx1qygyasbw58mgl91ahqjdrk8cj9y861c709szs4vd"; depends=[geometries jsonify rapidjsonr Rcpp sfheaders]; }; geoknife = derive2 { name="geoknife"; version="1.6.6"; sha256="0g4aia9v9f76njpjnd0silx7mqapycp2w5akyipwdag9gyizps61"; depends=[curl httr progress sp whisker xml2]; }; - geomander = derive2 { name="geomander"; version="2.0.2"; sha256="1kpqsv21avw07bxd77galmwv2a8pkkvva8mzx42k3qg6c9qfaj6k"; depends=[censable cli dataverse dplyr geos ggplot2 magrittr Rcpp readr sf stringr tibble tidyr tigris]; }; + geomander = derive2 { name="geomander"; version="2.0.3"; sha256="05qbq6a4cdnaazh0bwi5l523lm8y1ax5zf32pyl34rlqv70450sd"; depends=[censable cli dataverse dplyr geos ggplot2 magrittr Rcpp readr sf stringr tibble tidyr tigris]; }; geomapdata = derive2 { name="geomapdata"; version="1.0-4"; sha256="1g89msnav87kim32xxbayqcx1v4439x4fsmc8xhlvq4jwlhd5xxw"; depends=[]; }; geomedb = derive2 { name="geomedb"; version="2.0.1"; sha256="1l35c9x1mhqd7z5ragd7w3ay8v2fdnbmbfx9grwi622j8yz1fbmq"; depends=[ape httr jsonlite]; }; geomerge = derive2 { name="geomerge"; version="0.3.2"; sha256="1i6n88k8icwihr9w7ipjb50f68zad602dipb3hd887y4kyf14wni"; depends=[geosphere ggplot2 gridExtra inlmisc lubridate raster scales sp spdep]; }; @@ -9953,10 +9981,10 @@ in with self; { geometr = derive2 { name="geometr"; version="0.2.10"; sha256="00yhw6k9wj3q0mmhwrjvhybsz5fcx86ms5n1q2l492jljplp46cr"; depends=[checkmate crayon deldir dplyr purrr raster Rcpp rgdal rlang sf sp tibble]; }; geometries = derive2 { name="geometries"; version="0.2.0"; sha256="05036q4dccmmd955g4n2s5ncc9zxd9v9qyamszszwn147i7hkxcc"; depends=[Rcpp]; }; geometry = derive2 { name="geometry"; version="0.4.5"; sha256="1n10l8ax3783v3lgaacb15qsn8b3f0wpmhg3k39j31s6ciyd3vcg"; depends=[linprog lpSolve magic Rcpp RcppProgress]; }; - geomorph = derive2 { name="geomorph"; version="4.0.1"; sha256="05qiqyrc0vn1hi8g4hfs6hcysar3yqkw9r6hr3fg5f6qdnlznm4x"; depends=[ape ggplot2 jpeg Matrix rgl RRPP]; }; + geomorph = derive2 { name="geomorph"; version="4.0.3"; sha256="0qz2hiqpn8sxd5kqvmvr1fx2vl8h70jj4jxcmbjg31gfybnppmwg"; depends=[ape ggplot2 jpeg Matrix rgl RRPP]; }; geomtextpath = derive2 { name="geomtextpath"; version="0.1.0"; sha256="19hxqwzz3vli7f5631njz142ca01b4zfs72g4wwpswm5vkpkizdx"; depends=[ggplot2 rlang scales systemfonts textshaping]; }; geonames = derive2 { name="geonames"; version="0.999"; sha256="0yz1b7y3vwa4izrhpry4n3iwzb7y67s5p3kgnd7d29cl5pcbpmqx"; depends=[rjson]; }; - geonapi = derive2 { name="geonapi"; version="0.5-2"; sha256="0zf4g1k439a14sq9pvajpsbvvasy1bqa4cpbqs9mzzlzbwpbjm8y"; depends=[geometa httr keyring openssl R6 XML]; }; + geonapi = derive2 { name="geonapi"; version="0.5-3"; sha256="0kmqax0wvhdw0rhrj5091wlhcsdfala6grspdss9s4q857xacx85"; depends=[geometa httr keyring openssl R6 XML]; }; geonet = derive2 { name="geonet"; version="0.6.0"; sha256="0zav0r4q8i8mxwnr3a7j2ldprfb979pmcx76ssks4p6cfqp0syj4"; depends=[dplyr ggplot2 igraph Matrix mgcv spatstat_core spatstat_geom spatstat_linnet]; }; geonetwork = derive2 { name="geonetwork"; version="0.4.1"; sha256="04vf39hxl1a2kbgqc054xg9w6hbd3fwag6sy0j8a9agrd5wgks7h"; depends=[geosphere igraph rgdal sf sp]; }; geophys = derive2 { name="geophys"; version="1.4-1"; sha256="1s64sbr0chv0z2vaw059khfkv8iga1kr6428kkglgafq5x2d6h3q"; depends=[cluster GEOmap RFOC RPMG RSEIS]; }; @@ -9969,7 +9997,8 @@ in with self; { geosphere = derive2 { name="geosphere"; version="1.5-14"; sha256="0bg4vfmrw140j2ax0p6bflvb77w03ir39wa87l96rj473jpa9hzj"; depends=[sp]; }; geospt = derive2 { name="geospt"; version="1.0-2"; sha256="1814nn0naxvbn0bqfndpmizjbqcs6rm87g2s378axkn6qpii4bh8"; depends=[fields genalg gsl gstat limSolve MASS minqa plyr sgeostat sp TeachingDemos]; }; geosptdb = derive2 { name="geosptdb"; version="0.5-0"; sha256="0m0dlazhq2za71mi3q8mz2zvz7yrmda7lha02kh9n820bx89v33z"; depends=[FD fields geospt gsl limSolve minqa sp StatMatch]; }; - geostats = derive2 { name="geostats"; version="1.3"; sha256="1k999b8dgwvajialsbijscndvbbm4hvvdlmycn8xwbbiqdz074ms"; depends=[]; }; + geostan = derive2 { name="geostan"; version="0.2.1"; sha256="136y4d5wk0pcsbi0av6k3knjqdw665cb9hv892gdslclqlkni0r4"; depends=[BH ggplot2 gridExtra MASS Matrix Rcpp RcppEigen RcppParallel rstan rstantools sf signs spdep StanHeaders truncnorm]; }; + geostats = derive2 { name="geostats"; version="1.4"; sha256="0knxv0jnrpijc6wg46qrrrsjikd37dgrkdp8l2kva18zl4cgh922"; depends=[]; }; geotech = derive2 { name="geotech"; version="1.0"; sha256="18s7w6h1svc4n1hcgj5njfkf3nflkc53cdwsq5112p3442rlz33f"; depends=[]; }; geotools = derive2 { name="geotools"; version="0.1"; sha256="0d0vf9dvrrv68ivssp58qzaj8vra26ms33my097jmzmgagwy1spd"; depends=[]; }; geotoolsR = derive2 { name="geotoolsR"; version="1.1"; sha256="162s37j7wh14h91b6acn453bvgpk3cakfi7mgrdvr5bjdqqn7j7v"; depends=[dplyr geoR ggplot2 tidyr]; }; @@ -10018,6 +10047,7 @@ in with self; { ggBubbles = derive2 { name="ggBubbles"; version="0.1.4"; sha256="116rl8j0s9xwhh9jl5yj9fspkhv2zrirbx9247hhns9ngrdn4i3x"; depends=[dplyr ggplot2]; }; ggChernoff = derive2 { name="ggChernoff"; version="0.2.0"; sha256="09bh9isvx3hwwvg72fv6z3fvp8dimpbhvbp328z8amq8jjhph4vf"; depends=[ggplot2 scales]; }; ggDCA = derive2 { name="ggDCA"; version="1.1"; sha256="0jpg7n6nk2jgq668ff0l9zk26zk39abc74f6w5x8gf4zsb8y0zp9"; depends=[base_rms do ggplot2 rms set survival]; }; + ggDoubleHeat = derive2 { name="ggDoubleHeat"; version="0.1.0"; sha256="106n2r6l4grg0g8w8z5nb4fw33sh62nyssbqmkq1w82xs73529i4"; depends=[ggnewscale ggplot2 rlang]; }; ggESDA = derive2 { name="ggESDA"; version="0.1.0"; sha256="0j2ix9abzsxdmjklg44ajz69hlhpg9a31rjqrwymrlkdgdswpzvk"; depends=[dplyr ggforce ggplot2 ggpubr ggthemes gridExtra gtools magrittr prodlim R6 rlang RSDA stringr tibble tidyr tidyverse]; }; ggExtra = derive2 { name="ggExtra"; version="0.9"; sha256="18mbi6gblqmrsciad1d2c9ngllk6mayaqj43k40hjq9ydqnvjbgj"; depends=[colourpicker ggplot2 gtable miniUI R6 scales shiny shinyjs]; }; ggHoriPlot = derive2 { name="ggHoriPlot"; version="1.0.0"; sha256="198l1jzs2wybg8ixq8aacrs3b7g2hpxbi7gajr2z5hyiv7317lrq"; depends=[dplyr ggplot2 glue magrittr stringr tidyr]; }; @@ -10026,7 +10056,6 @@ in with self; { ggQC = derive2 { name="ggQC"; version="0.0.31"; sha256="1j9cs97hcj5zmqvn5rjr3gl0b9748s3pv2nb7v66dsyjdwvj7wyy"; depends=[dplyr ggplot2 tidyr]; }; ggQQunif = derive2 { name="ggQQunif"; version="0.1.5"; sha256="0vrxmqxy946mwdq0mb2m1ch41r0chrw7hcn18dr3mp10bv7pl7wj"; depends=[dplyr ggplot2 scales]; }; ggROC = derive2 { name="ggROC"; version="1.0"; sha256="0p9gdy7ia59d5m84z9flz5b03ri7nbigb3fav2v2wrml300d24vn"; depends=[ggplot2]; }; - ggRandomForests = derive2 { name="ggRandomForests"; version="2.0.1"; sha256="0f8m0j79d8wbac14zk1s8812rz6vgf04bz1iqq8p4d3sxwnvaj7q"; depends=[ggplot2 randomForest randomForestSRC survival tidyr]; }; ggResidpanel = derive2 { name="ggResidpanel"; version="0.3.0"; sha256="1vsjw229pd36100ix1sgfmk5lb9b0fx3l6pxg1irsfhm2ypbg1ig"; depends=[cowplot ggplot2 MASS plotly qqplotr stringr]; }; ggThemeAssist = derive2 { name="ggThemeAssist"; version="0.1.5"; sha256="1biw91a8p13h62v4w3yim6ghr98khmyhb3qd0h04asf91vvmpxbv"; depends=[formatR ggplot2 miniUI rstudioapi shiny]; }; ggTimeSeries = derive2 { name="ggTimeSeries"; version="1.0.2"; sha256="0sd39svwi3ai81szahd49a8qvsydi1922z4q6r2r70fpbfwi4qrq"; depends=[data_table ggplot2]; }; @@ -10037,12 +10066,14 @@ in with self; { ggalt = derive2 { name="ggalt"; version="0.4.0"; sha256="0ssa274d41vhd6crzjz7jqzbwgnjimxwxl23p2cx35aqs5wdfjpc"; depends=[ash dplyr extrafont ggplot2 gtable KernSmooth maps MASS plotly proj4 RColorBrewer scales tibble]; }; ggamma = derive2 { name="ggamma"; version="1.0.1"; sha256="1zc4p2bz4pxqycrzgb9wwl53lxqcikxsihna6ff8pmw1n623j85z"; depends=[]; }; gganimate = derive2 { name="gganimate"; version="1.0.7"; sha256="046v6j92xxgaghsnh88dy5h8x040qsfa8csvhp4dmsfmrrf0dz0f"; depends=[ggplot2 glue plyr progress rlang scales stringi tweenr]; }; + ggarchery = derive2 { name="ggarchery"; version="0.2.0"; sha256="1w9dfjvhxrf8alf155jjjhk5380pk1n3asmqayg0rggsq98bj0jh"; depends=[ggplot2 glue purrr rlang tidyverse]; }; ggasym = derive2 { name="ggasym"; version="0.1.6"; sha256="1vgsqq2m4w5clmf27mmj6jqn2s8m1izz3gj2bxqpmdcvzf5vxkgr"; depends=[dplyr ggplot2 magrittr purrr rlang scales stringr tibble tidyr]; }; ggbeeswarm = derive2 { name="ggbeeswarm"; version="0.6.0"; sha256="0crk29p5vi1r3a988kms4y7r0iqwgwzsikgvh18r9wbzyr98bb5v"; depends=[beeswarm ggplot2 vipor]; }; ggborderline = derive2 { name="ggborderline"; version="0.1.0"; sha256="02m7g0fmayp0zscj3x167n96cj6kn62a8nw67d42k6p74bard2sy"; depends=[ggplot2 scales]; }; ggbreak = derive2 { name="ggbreak"; version="0.0.9"; sha256="1m93dwdhbibvmhzdk06z9kxdsv435rrs3g2m6lji5pajmf6qf72s"; depends=[aplot ggfun ggplot2 ggplotify rlang]; }; ggbuildr = derive2 { name="ggbuildr"; version="0.1.0"; sha256="0pld635v6fv46ky7s4icwxlcnr7z6bp5ikf20adpkljwhy0wwxak"; depends=[ggplot2 purrr readr]; }; ggbump = derive2 { name="ggbump"; version="0.1.0"; sha256="15cnzv2q3gylkmd1zj044cp14ldnkc4fzwmxaqpc8cagwf9i10zk"; depends=[dplyr ggplot2 purrr tidyr]; }; + ggchangepoint = derive2 { name="ggchangepoint"; version="0.1.0"; sha256="0brd9z8wj563j2kcx12bz4kyg2ynppxx5cz8k23xli1qijlib98p"; depends=[changepoint changepoint_np dplyr ecp ggplot2 Rdpack tibble]; }; ggcharts = derive2 { name="ggcharts"; version="0.2.1"; sha256="1c0gdn8skkm82f3qxv9551l36zwqcga9b9sbc48q8hp71ay4ac6b"; depends=[colorspace dplyr ggplot2 lifecycle magrittr patchwork rlang]; }; ggcleveland = derive2 { name="ggcleveland"; version="0.1.0"; sha256="1pl9qhj7p5kflx0ni59hq1k9afqchghg5wig9v1ml5pqrjz70pxa"; depends=[dplyr egg ggplot2 lattice magrittr readr rlang stringr tibble tidyr vctrs]; }; ggconf = derive2 { name="ggconf"; version="0.1.3"; sha256="0g4xasqhdiqfqahakv6p5npl56f2iakx4bnc9v9zcjr077kdda4n"; depends=[ggplot2 rly]; }; @@ -10050,8 +10081,9 @@ in with self; { ggdag = derive2 { name="ggdag"; version="0.2.4"; sha256="18085dxp9fv1l192mgadwlsa114fj370pd8r98q3g5pd1ppw8bip"; depends=[dagitty dplyr forcats ggplot2 ggraph ggrepel igraph magrittr pillar purrr stringr tibble tidygraph]; }; ggdark = derive2 { name="ggdark"; version="0.2.1"; sha256="1w93g2j4g45x9s841v9zi18lxzda81ipa13fajqc6p9xk8frvgrf"; depends=[ggplot2]; }; ggdemetra = derive2 { name="ggdemetra"; version="0.2.2"; sha256="1j0nwmv2acyrkpn230jj6yf5nnl40kpqdqaglrnrfqw5rp357krp"; depends=[ggplot2 ggrepel gridExtra RJDemetra]; }; - ggdendro = derive2 { name="ggdendro"; version="0.1.22"; sha256="0skbj487b6f6pj2iz4yq2b9gbgb39cv5dyzhdl3w7ay1k0s5z9ph"; depends=[ggplot2 MASS]; }; - ggdist = derive2 { name="ggdist"; version="3.0.1"; sha256="0g8b3ipj0yk9ckf0f1d7lxhaw2x5rscga74mbi0hkfygsks1iafa"; depends=[distributional dplyr ggplot2 HDInterval rlang scales tibble tidyselect vctrs withr]; }; + ggdendro = derive2 { name="ggdendro"; version="0.1.23"; sha256="1f4fz9llmbpb8gh90aid7dvriadx16xdhsl7832yw4pyqj4fjcrs"; depends=[ggplot2 MASS]; }; + ggdensity = derive2 { name="ggdensity"; version="0.0.1"; sha256="0jvybcxcrdr05ca9s9l7941zklr5dpvx5rg789591dvdllfz0dbm"; depends=[ggplot2 isoband MASS scales]; }; + ggdist = derive2 { name="ggdist"; version="3.1.1"; sha256="177dnaz3gzs8mw95dwcssf87va5cyjm1g4ds3b6mwmz88ywq4a6r"; depends=[distributional dplyr ggplot2 glue HDInterval numDeriv rlang scales tibble tidyselect vctrs withr]; }; ggdmc = derive2 { name="ggdmc"; version="0.2.6.0"; sha256="1gncv7npl548k3zd41x2gwg5qywn5rp6zb4i7ga78sy77mvi3x92"; depends=[coda data_table ggplot2 matrixStats Rcpp RcppArmadillo]; }; gge = derive2 { name="gge"; version="1.7"; sha256="1lis0w4n0fns1fsl95p1pbvbqkb3vlwzb5pk5hqlzadjrnrs6gzw"; depends=[nipals reshape2]; }; ggeasy = derive2 { name="ggeasy"; version="0.1.3"; sha256="0zp9jhm8vc1gpja5s6g92snd1jnskadafc226l51y8cps7lj8f6q"; depends=[ggplot2 rlang]; }; @@ -10085,7 +10117,7 @@ in with self; { gginference = derive2 { name="gginference"; version="0.1.3"; sha256="1r960cglnkii8xih4r1r7wd857jqn53f08zi9dnj54bpqrs374zx"; depends=[ggplot2 rlang]; }; gginnards = derive2 { name="gginnards"; version="0.1.0-1"; sha256="1kgyrssmkyaqkahdqbc7abx955iyfls96kfamryhcarvbclkf2jx"; depends=[ggplot2 magrittr rlang stringr tibble]; }; ggip = derive2 { name="ggip"; version="0.2.0"; sha256="0jfh6sr34nbqwqypx6qdjggl2q6qbmpl17cmy45v6zdr5phrzhrx"; depends=[dplyr ggplot2 glue ipaddress Rcpp rlang tidyr vctrs]; }; - ggiraph = derive2 { name="ggiraph"; version="0.8.1"; sha256="0skdf7ga8a169xrbgljydk6yc18spi1m1s5604m576pkbc47zv87"; depends=[ggplot2 htmltools htmlwidgets purrr Rcpp rlang systemfonts uuid]; }; + ggiraph = derive2 { name="ggiraph"; version="0.8.2"; sha256="1wqc490ly9v3m3xszk8xj2x6i36bppzmm39xn4w0qfabrnqzzbg0"; depends=[ggplot2 htmltools htmlwidgets purrr Rcpp rlang systemfonts uuid]; }; ggiraphExtra = derive2 { name="ggiraphExtra"; version="0.3.0"; sha256="0q8ppixw5i1hpphmswpw6lvq7gx8rx4gfs2b8d31wbn32ziiv2rk"; depends=[dplyr ggiraph ggplot2 magrittr mgcv mycor plyr ppcor purrr RColorBrewer reshape2 scales sjlabelled sjmisc stringr tidyr]; }; ggjoy = derive2 { name="ggjoy"; version="0.4.1"; sha256="012md2m0jqfcccb933j423m3ck31v3p0pd41gjxpyg9082y7ixyj"; depends=[ggplot2 ggridges]; }; gglasso = derive2 { name="gglasso"; version="1.5"; sha256="12l0ac1n54z41yw7c00fm6q2mjmhp9blk4f8vp7q2my2xxwh1fmj"; depends=[]; }; @@ -10104,7 +10136,7 @@ in with self; { ggmuller = derive2 { name="ggmuller"; version="0.5.4"; sha256="0y7bm9fm5i8acpy6fa903ca2r9yasky7kg2hicm4xz5ni09jm20x"; depends=[ape dplyr ggplot2]; }; ggmulti = derive2 { name="ggmulti"; version="1.0.4"; sha256="07kqhfpg7alayfq4a86wq18jzdcmxd99607w1amzidizmwgd54d8"; depends=[dplyr ggplot2 tidyr]; }; ggnetwork = derive2 { name="ggnetwork"; version="0.5.10"; sha256="0gqdgy5yh700dg0f7xb80hczlnqfisn8l55j7amd1n7fp2x5sr8v"; depends=[ggplot2 ggrepel igraph network sna]; }; - ggnewscale = derive2 { name="ggnewscale"; version="0.4.5"; sha256="1hjysfagd2lqy8yivqq9q7l6hbvyq8kasw3zqh5fk9xn18ikc702"; depends=[ggplot2]; }; + ggnewscale = derive2 { name="ggnewscale"; version="0.4.6"; sha256="08xqhv6y9m9f2p8q3h0dh7mbpqg3r2i590x2983k69plfa5jxzv3"; depends=[ggplot2]; }; ggnormalviolin = derive2 { name="ggnormalviolin"; version="0.1.2"; sha256="1gbv2b86nznw5bs05c4ns96b8hsxkhikhcf8syl2qbbafzy8vx6y"; depends=[dplyr ggplot2 magrittr scales]; }; ggnuplot = derive2 { name="ggnuplot"; version="0.1.0"; sha256="0i09ybmxdjyr15z1a651k3bkbqskri4ipcyjap93020zbfv05r9c"; depends=[ggplot2]; }; ggokabeito = derive2 { name="ggokabeito"; version="0.1.0"; sha256="07lbzq87zl2yswidp0f90l8szl7y4wwn8psgacyl90wn2gd9mdcp"; depends=[ggplot2]; }; @@ -10113,6 +10145,7 @@ in with self; { ggparallel = derive2 { name="ggparallel"; version="0.2.0"; sha256="0zxaff0jbqkbavsmh1yyp3vdrxsam6a66hjw8lamv9pksdw1s2wf"; depends=[ggplot2 plyr reshape2]; }; ggparliament = derive2 { name="ggparliament"; version="2.0.0"; sha256="04za4lm3lir95bgda1rzlsyil2fkac3j5f5f1pjw2samy6pjz80r"; depends=[dplyr ggplot2 rlang]; }; ggparty = derive2 { name="ggparty"; version="1.0.0"; sha256="0s6hr5p930kl3pj6ajwgwqz6yikc3l9hhzy1yn0nqc0r8pp2jyqf"; depends=[checkmate ggplot2 gtable partykit rlang survival]; }; + ggpattern = derive2 { name="ggpattern"; version="0.4.2"; sha256="12xzvdhq2g3h5gggmm6rk7hdjici2kl7wjs98l5yh6yqnbglig74"; depends=[ggplot2 glue gridpattern rlang scales]; }; ggperiodic = derive2 { name="ggperiodic"; version="1.0.1"; sha256="084n37jwldnhqx61ayq9b55bi4dp2iqyrj2qbp67w0ps1xn5jm6b"; depends=[data_table dplyr ggplot2 sticky tidyselect]; }; ggplot_multistats = derive2 { name="ggplot.multistats"; version="1.0.0"; sha256="1afzfa86vc484bcwpg7m1ky03jpax584rigzgai8w06pifkmz0il"; depends=[ggplot2 hexbin rlang scales]; }; ggplot2 = derive2 { name="ggplot2"; version="3.3.5"; sha256="1si46bf9p09qzs208hqffwcb40305p361whmwhc1pwrsmx7jjxdh"; depends=[digest glue gtable isoband MASS mgcv rlang scales tibble withr]; }; @@ -10123,6 +10156,7 @@ in with self; { ggplotlyExtra = derive2 { name="ggplotlyExtra"; version="0.0.1"; sha256="1m2rhylpzj934gb50lxjp47rxz0kwl9i1p3n7w1rz4qi96pr5p1c"; depends=[ggplot2 plotly rlang]; }; ggpmisc = derive2 { name="ggpmisc"; version="0.4.5"; sha256="036y3zhl9ndj5wlqy2nkp95vi7pjfpvf63ndsigramzad0fz0c98"; depends=[dplyr generics ggplot2 ggpp lmodel2 lubridate MASS plyr polynom quantreg rlang scales splus2R tibble]; }; ggpointdensity = derive2 { name="ggpointdensity"; version="0.1.0"; sha256="0c9a14j3b0hvamqylhzldw2hjdxmfbllwahjkf3gg2rw337ld9iy"; depends=[ggplot2]; }; + ggpointless = derive2 { name="ggpointless"; version="0.0.1"; sha256="01w4aa84lrk4lwv2a0jhbia8c60mc9jqp9jplrnvngna17wlq2f1"; depends=[ggplot2]; }; ggpol = derive2 { name="ggpol"; version="0.0.7"; sha256="11xr26kwmkjjb51wm44ydv0vcinc6k6faqwx4s2faj4iwidlys1m"; depends=[dplyr ggplot2 glue gtable plyr rlang tibble]; }; ggpolar = derive2 { name="ggpolar"; version="0.2.0"; sha256="0i795635yziz1qssrvnvpbar5fdp4vxfmzaaxdlw6cccf3qfnnvq"; depends=[ggplot2]; }; ggpolypath = derive2 { name="ggpolypath"; version="0.1.0"; sha256="0g9zfal3vqcx16fi4abxm6l5sam475lk1f6bdik487wc2v0dkq83"; depends=[ggplot2]; }; @@ -10174,7 +10208,7 @@ in with self; { ggx = derive2 { name="ggx"; version="0.1.1"; sha256="13yvckny2b7b7rhgi28xm8379paskin78wm5095s1ily9a2dxgkg"; depends=[ggplot2 sets]; }; gh = derive2 { name="gh"; version="1.3.0"; sha256="077drbxz3rx7idv6w24ipj1p6jnzv86a3iyryab699cc9q2kjh54"; depends=[cli gitcreds httr ini jsonlite]; }; ghclass = derive2 { name="ghclass"; version="0.2.1"; sha256="0jpfc2mjwi6i3bcrfjjl6k4im4m110pq2n00mij2n9czz6v2chla"; depends=[base64enc cli dplyr fs gh glue httr lubridate purrr rlang tibble whisker withr]; }; - ghcm = derive2 { name="ghcm"; version="2.0.0"; sha256="0c09galykcn4nsbkvgh0i5mk8jxwi1vddqq4my2q3ybjipcv23if"; depends=[CompQuadForm MASS refund]; }; + ghcm = derive2 { name="ghcm"; version="3.0.0"; sha256="0byzi0q3amz7q6if0y54mk3wac0pycci9ypagr65p8rlhx04gqv3"; depends=[CompQuadForm MASS Rcpp refund]; }; ghee = derive2 { name="ghee"; version="0.1.0"; sha256="0b3czx2ibi5p8xl7i36zxnab032vrkh5bv204r7wgg1xpx8pdlra"; depends=[gh jsonlite]; }; ghibli = derive2 { name="ghibli"; version="0.3.2"; sha256="0762dy3x7w0q1swag2lh33cpqdr9bbqw0963ymdpnchawdh5m50z"; depends=[prismatic]; }; ghql = derive2 { name="ghql"; version="0.1.0"; sha256="19awg98r2hwwwwrwh0166y8ij1clf58vrf02i8fhhfzddx3an6bz"; depends=[crul graphql jsonlite R6]; }; @@ -10196,17 +10230,18 @@ in with self; { gistr = derive2 { name="gistr"; version="0.9.0"; sha256="0ac9ikrdg6i8xvlma0gizvsdva46408lk7hvsgkqirhy2ljy02hp"; depends=[assertthat crul dplyr httr jsonlite knitr magrittr rmarkdown]; }; git2r = derive2 { name="git2r"; version="0.29.0"; sha256="13nlrhma6kavvhranb43w3003vadfkyrn2f4l3r63iqavj0s3xzq"; depends=[]; }; git2rdata = derive2 { name="git2rdata"; version="0.3.1"; sha256="0nvx6lfp66l44n3xwkj5biirrzwvl52dssfx8jysqjl1kgfrwwh3"; depends=[assertthat git2r yaml]; }; + git4r = derive2 { name="git4r"; version="0.1.1"; sha256="1z00m1l5gd1r03pnr7jcdzfba3vcak84xv3fbwhw8zcfjghsp3rc"; depends=[diffr git2r]; }; gitcreds = derive2 { name="gitcreds"; version="0.1.1"; sha256="1snzn7nxy0rwz0bzjsg6k04c0n811dgn8gn9cmn2v78aj57ayjmi"; depends=[]; }; - gitdown = derive2 { name="gitdown"; version="0.1.5"; sha256="0qmrjfh0a3n39yjhz2nfl6n19d1kzvaci7p0z3x3l1w7d1isrln1"; depends=[attempt bookdown dplyr git2r knitr magrittr purrr rmarkdown stringi tidyr]; }; + gitdown = derive2 { name="gitdown"; version="0.1.6"; sha256="16g4kngal0w0vjrympxmnq16rpxks4wbj35aasvr3p2srgqn86by"; depends=[attempt bookdown dplyr git2r knitr magrittr purrr rmarkdown stringi tidyr]; }; gitear = derive2 { name="gitear"; version="1.0.0"; sha256="139h19yyi7bpkps2vskdnga43ggpgb9fg8jdr7n8vgadxjamv98p"; depends=[dplyr httr jsonlite magrittr mockery Rcpp stringr tibble tidyr]; }; gitgadget = derive2 { name="gitgadget"; version="0.6.6"; sha256="1c8404mqcl5cp5wxm2mszry7a29da96hd5ng3f2ynbfvxis709km"; depends=[callr curl dplyr jsonlite markdown miniUI rstudioapi shiny shinyFiles usethis]; }; githubinstall = derive2 { name="githubinstall"; version="0.2.2"; sha256="0hqh86r2007hzdbm8rr0fwqhhsna7ji8sdgmdnrxkxraa5f2pfz3"; depends=[curl data_table devtools httr jsonlite mockery]; }; gitignore = derive2 { name="gitignore"; version="0.1.5"; sha256="1jph54ah4ajb5xakbpnbmp44ddqz5np7c60441vhfn7nxa5b9cpx"; depends=[clipr clisymbols crayon curl glue here jsonlite purrr xfun]; }; gitlabr = derive2 { name="gitlabr"; version="2.0.0"; sha256="0snd1pscv09wn3vjvfbvf87dcd43i25m2x3ra8vw37c2zd8hj500"; depends=[arpr base64enc dplyr httr magrittr purrr shiny stringr tibble]; }; gitlink = derive2 { name="gitlink"; version="0.1.3"; sha256="1g34cyx35wlpq42alsayk69x708zxqgvbdndb7j6n1q0rm4vncvd"; depends=[htmltools rlang]; }; - gittargets = derive2 { name="gittargets"; version="0.0.1"; sha256="02j5dlyxbzs5cf3240a77zc27ir2b9fp6f264fkfvm8f7cwm3z3y"; depends=[cli data_table gert processx targets tibble uuid]; }; + gittargets = derive2 { name="gittargets"; version="0.0.3"; sha256="00mv901r116s1jshbxinfnckh88q2083628898dag31ixj3bqlim"; depends=[cli data_table gert processx targets tibble uuid]; }; givitiR = derive2 { name="givitiR"; version="1.3"; sha256="0y2slhxhj7k413kjaydin9hq3x2xgx4cgjshdplwnmg3x2nakn31"; depends=[alabama rootSolve]; }; - gjam = derive2 { name="gjam"; version="2.5.1"; sha256="1lcciarfnj5azdhjr310xays5kpkdzjnk9jh0pxkhrfdpg43jgvz"; depends=[MASS RANN Rcpp RcppArmadillo]; }; + gjam = derive2 { name="gjam"; version="2.5.2"; sha256="0shq8cq7dq13f3x0ycx56izf9158aap76kghlcxhl8y42mgarxl5"; depends=[MASS RANN Rcpp RcppArmadillo]; }; gk = derive2 { name="gk"; version="0.5.1"; sha256="1hgxb1lp78pbnj22i7ryf46im301j05y7hh75z2fxvv5nqgg2v75"; depends=[Ecdat lubridate progress]; }; gkgraphR = derive2 { name="gkgraphR"; version="1.0.2"; sha256="1sb52hhpwm3bq7rn2xdq5vly6z1c5yab9a26xzgj3c5s47vk02pa"; depends=[httr ISOcodes jsonlite]; }; gkmSVM = derive2 { name="gkmSVM"; version="0.81.0"; sha256="119g5rhc7ffyviz04r04aj5z1g6abnj3ddd01g7db505sdr6lapj"; depends=[kernlab Rcpp ROCR seqinr]; }; @@ -10255,14 +10290,14 @@ in with self; { glmpca = derive2 { name="glmpca"; version="0.2.0"; sha256="02xjf0gg52925hw9nw2j0znfmzfzfwbv0fxjl9d2fy9j63drr2h4"; depends=[MASS]; }; glmtlp = derive2 { name="glmtlp"; version="2.0.1"; sha256="0ax3jhbib75gzp5a2y4nj80qss4qmn65rra8bsnkmwgcn4qg8xja"; depends=[doParallel foreach ggplot2]; }; glmtoolbox = derive2 { name="glmtoolbox"; version="0.1.2"; sha256="1f3kw9w5i8jd9j9xmdq9327dh77xichssw53nsayn9w41n9ky431"; depends=[numDeriv Rfast]; }; - glmtrans = derive2 { name="glmtrans"; version="1.0.0"; sha256="1r8zgdybl2z9bivcfdmbx2wfpaj82d95gdkaixwzwjknjn50ccyv"; depends=[assertthat caret doParallel foreach formatR ggplot2 glmnet]; }; + glmtrans = derive2 { name="glmtrans"; version="2.0.0"; sha256="10d9z1rrjnxkw3nmim01ql5yfn1w62sncgclmprznr5kbna49yj3"; depends=[assertthat caret doParallel foreach formatR ggplot2 glmnet]; }; glmtree = derive2 { name="glmtree"; version="0.2"; sha256="07b7ma38r5cjv6c33q1n2f8xvzn3lj004i8v947pqdhg3fi9wlc6"; depends=[caret dplyr magrittr partykit]; }; glmulti = derive2 { name="glmulti"; version="1.0.8"; sha256="0zviahj99645s1xs2f9z7rnv95x4rdz7mfwzy3qjfw46yqpfj5cn"; depends=[leaps rJava]; }; glmvsd = derive2 { name="glmvsd"; version="1.4"; sha256="03axsn85axs4d6fdlr3wcdwq6qa4991svkqc7k9r52kk1ar0w5zz"; depends=[brglm glmnet MASS ncvreg]; }; glmx = derive2 { name="glmx"; version="0.1-1"; sha256="06v2qxgr16w0qnfhjr9vdqcad5v475pwg2yhw0i236yzqbnsssh6"; depends=[Formula lmtest MASS sandwich]; }; glmxdiag = derive2 { name="glmxdiag"; version="1.0.0"; sha256="0m077j7prjc38yshq8ahprfsai0rc20qma2njjbdi975mrwxi25c"; depends=[VGAM]; }; globalGSA = derive2 { name="globalGSA"; version="1.0"; sha256="1f3xv03m6g2p725ff0xjhvn2xcfm7r7flyrba080i4ldy6fd8jg8"; depends=[]; }; - globalKinhom = derive2 { name="globalKinhom"; version="0.1.3"; sha256="1hj2f8sd9mfr44g93y2j6sazrlkpkgb10jw5fcjcf3w5738pvh5a"; depends=[spatstat spatstat_core spatstat_geom]; }; + globalKinhom = derive2 { name="globalKinhom"; version="0.1.4"; sha256="0ah05yl0fxiih3lfh8gxls01ikanwg3z8npbgv625zjfrqp1qwsw"; depends=[spatstat_core spatstat_geom spatstat_random]; }; globalOptTests = derive2 { name="globalOptTests"; version="1.1"; sha256="0yf4p82dpjh36ddpfrby7m3fnj2blf5s76lncflch917sq251h4f"; depends=[]; }; globals = derive2 { name="globals"; version="0.14.0"; sha256="1wrjiiif6rpc268zz79pvpw33si6n6ffgxdnxmmcracwhb5vqg90"; depends=[codetools]; }; globe = derive2 { name="globe"; version="1.2-0"; sha256="0xa0q5dac0g7xdlr679f3km8nqxlm7gi4msp9fbfivfvy0rmri96"; depends=[]; }; @@ -10270,7 +10305,7 @@ in with self; { glow = derive2 { name="glow"; version="0.10.1"; sha256="1br29hy5j30k5q4xk1dglxlhqalhm76hnx8xg73v6whcg5j11392"; depends=[ggplot2 R6 Rcpp RcppEigen RcppParallel scales]; }; glpkAPI = derive2 { name="glpkAPI"; version="1.3.3"; sha256="07bksiqmq2n7ki3f3sxph4v44k7q2b0d88jwjgfxzdn33i65wqyq"; depends=[]; }; glrt = derive2 { name="glrt"; version="2.0"; sha256="0p2b0digndvnn396ynv56cdg436n3ll7pxkb81rs3dhwbyqyc948"; depends=[survival]; }; - glue = derive2 { name="glue"; version="1.6.1"; sha256="1nvqm4fmxyszz9b2y0gjiwbvwssdqj9jflcz00b4487i8jajz31i"; depends=[]; }; + glue = derive2 { name="glue"; version="1.6.2"; sha256="1gzxk5jgdh2xq9r7z09xs306ygzf27vhg3pyfl7ck1755gqii9cx"; depends=[]; }; gluedown = derive2 { name="gluedown"; version="1.0.4"; sha256="1rvaac27kc4mppmw9kdwjaqsa7lwfzwffv63c8cky1z0xrsc5zz1"; depends=[glue magrittr]; }; gluvarpro = derive2 { name="gluvarpro"; version="4.0"; sha256="09l9yincr1k5j9wnj3zvfzsffjh3r54aa8fn0ik8vhlbq13ag8kp"; depends=[ggplot2 gridExtra pracma scales tidyr zoo]; }; glvmfit = derive2 { name="glvmfit"; version="0.1.0"; sha256="1nb34dm4m0nq7cr9f9jsacnk0xjv451m419sdwbk11ykpqkh9cdk"; depends=[]; }; @@ -10288,7 +10323,8 @@ in with self; { gmm = derive2 { name="gmm"; version="1.6-6"; sha256="16vkb472bjlfccfpl94mz772nbyf76wkwb2shai18jja3fnj3cxi"; depends=[sandwich]; }; gmnl = derive2 { name="gmnl"; version="1.1-3.2"; sha256="01pviab3gyvjdlv5jy7wzp33909znhpn47kar55bwkm6gm3bdlg8"; depends=[Formula maxLik mlogit msm plotrix truncnorm]; }; gmodels = derive2 { name="gmodels"; version="2.18.1"; sha256="0s8kd8krqk4kwv2zqxpsfy3w8qdwf5naf4b5l383vidq9sil0qb2"; depends=[gdata MASS]; }; - gmp = derive2 { name="gmp"; version="0.6-2.1"; sha256="1mj7hy6riaxl9n4q2cnyyjazwad90xbjszk25si968618rih4n64"; depends=[]; }; + gmp = derive2 { name="gmp"; version="0.6-4"; sha256="0vfhz5cpffcrmq011h7jvy1r6d5pbbpkxj8431bhj5x5h25x7sjn"; depends=[]; }; + gmpoly = derive2 { name="gmpoly"; version="1.0.0"; sha256="0nl5cbp6kk382nd1w7zpb571zyf4jark51xih34bnhy6kyq04xkw"; depends=[gmp mvp purrr]; }; gms = derive2 { name="gms"; version="0.4.0"; sha256="1m7bhy4vsz6l09pal9ibjlskmbyjmc29hqwjim1x8yansd5bxpzv"; depends=[dplyr rlang stringr yaml]; }; gmt = derive2 { name="gmt"; version="2.0.2"; sha256="0z5abh0kw97y90nxkkxxg2xgv1avxijf71v88lwhy25jgv8r7b38"; depends=[]; }; gmvarkit = derive2 { name="gmvarkit"; version="2.0.2"; sha256="0si4a4ds9804rssim7vljv3q7ny54kd1lf9sljisrfilnbj69qsy"; depends=[Brobdingnag gsl mvnfast pbapply]; }; @@ -10302,8 +10338,9 @@ in with self; { gnumeric = derive2 { name="gnumeric"; version="0.7-8"; sha256="0iwl00mzsg8h8q67bjp6485idjlmj24362b1rbmkifckss8hrc98"; depends=[XML]; }; goeveg = derive2 { name="goeveg"; version="0.5.1"; sha256="1dg0aw3sfar706jyiy5m5qz3nzs6sy3ljs9jp0p65b0v01rw8sbs"; depends=[fields Hmisc mgcv vegan]; }; gofCopula = derive2 { name="gofCopula"; version="0.4-1"; sha256="17bdrn8xsqjz64caa5wdigkv798i18gc2f9jiin1bz840bqn1abg"; depends=[copula crayon doSNOW foreach MASS numDeriv progress R_utils SparseGrid VineCopula yarrr]; }; + gofar = derive2 { name="gofar"; version="0.1"; sha256="10c1qgmkdhzxk9m2sd0xxww453y9lf5vjsrbmrbzbln91i6svy8j"; depends=[glmnet magrittr MASS Rcpp RcppArmadillo rrpack]; }; gofastr = derive2 { name="gofastr"; version="0.3.0"; sha256="02jn4xbbafl7siwvkqns1818wmw813x9cvqfcnpnmcippiqhrb0b"; depends=[data_table quanteda slam SnowballC tm]; }; - gofcat = derive2 { name="gofcat"; version="0.1.1"; sha256="1r3yb1dx97gqnzx1j7pn6fpqxdizw79rip2h9l1kmqqmsch3yygp"; depends=[crayon epiR Matrix reshape stringr VGAM]; }; + gofcat = derive2 { name="gofcat"; version="0.1.2"; sha256="0jkkavws3p336i3gzlkd24q467zd1clfndcpimwc6scy8zh67q9l"; depends=[crayon epiR Matrix reshape stringr VGAM]; }; goffda = derive2 { name="goffda"; version="0.1.0"; sha256="0xxqq6bnc543k7b69ix255x4hv95cy4w2ffiq5v22dal456ggy9m"; depends=[fda_usc glmnet ks Rcpp RcppArmadillo]; }; gofgamma = derive2 { name="gofgamma"; version="1.0"; sha256="00wda3fandrd1kkm20fb615g5fd0wykk3s0xn0xh9da28q08yh2m"; depends=[]; }; goft = derive2 { name="goft"; version="1.3.6"; sha256="0ag1bks44hm787sgbab70ab9q0dzbfsx70ldprafjx92gg1cqv5s"; depends=[fitdistrplus sn]; }; @@ -10311,14 +10348,14 @@ in with self; { gogarch = derive2 { name="gogarch"; version="0.7-2"; sha256="03gpl73zc6kx4gni59xbg7b38dkpd7p4c7kvlqm46f58j257viik"; depends=[fastICA fGarch]; }; goldi = derive2 { name="goldi"; version="1.0.1"; sha256="191ac02bwrxr3khq6qirhxzfhv7pqfhqyg7jb473p5vwygpvc53l"; depends=[dplyr futile_logger magrittr Rcpp RcppArmadillo SnowballC tm]; }; goldilocks = derive2 { name="goldilocks"; version="0.3.0"; sha256="1h16kfalyklc7i3rix1ml83wjcbi9wv3z3rwxa83gp2h6nfpzpwl"; depends=[dplyr fastlogranktest pbmcapply PWEALL rlang survival]; }; - golem = derive2 { name="golem"; version="0.3.1"; sha256="1amasx97ywyp0x7khdwmliaql4cnpc6gsn10rbd128wqcbma504k"; depends=[attempt cli config crayon desc dockerfiler fs here htmltools jsonlite pkgload remotes rlang roxygen2 rstudioapi shiny testthat usethis yaml]; }; + golem = derive2 { name="golem"; version="0.3.2"; sha256="008zhhmbgx6v3acw1gmzgzcpq8xj1i5mxpns6ixn538slrhlj5fx"; depends=[attempt brio cli config crayon desc fs here htmltools pkgload roxygen2 rstudioapi shiny usethis yaml]; }; gomms = derive2 { name="gomms"; version="1.0"; sha256="1i9d5y28wrhal990x7xxy99v3z9y2pzlakj7wnynd3dpx5pqr0jj"; depends=[]; }; gontr = derive2 { name="gontr"; version="1.1.0"; sha256="0asvpc3nizcn7cqdxr1j9hvhprmrazd8c7a2svhmln4vg9x1zzkp"; depends=[]; }; good = derive2 { name="good"; version="1.0.1"; sha256="0lgp8kpdiaprq78fzny5c344m2s1vb24y9x9m8rkg1kd769h56pv"; depends=[copula maxLik plyr]; }; goodpractice = derive2 { name="goodpractice"; version="1.0.2"; sha256="08rnm8z0pry5mwpc7p37r6f2rd56dry9djpcvvs9yl170w56psx0"; depends=[clisymbols covr crayon cyclocomp desc jsonlite lintr praise rcmdcheck rstudioapi whoami withr xml2 xmlparsedata]; }; googleAnalyticsR = derive2 { name="googleAnalyticsR"; version="1.0.1"; sha256="02lipd1li3jmnjyc0f19fsblji3sjjzdy9zyq1f0ay5lfa6j2x51"; depends=[assertthat cli dplyr googleAuthR httr jsonlite magrittr measurementProtocol memoise purrr rlang tibble tidyr usethis whisker]; }; googleAuthR = derive2 { name="googleAuthR"; version="2.0.0"; sha256="1svgjrh4wb3qdavhmks2lmncqrapvw17dvlbk0z1nbny7fplnl5s"; depends=[assertthat cli digest gargle httr jsonlite memoise rlang]; }; - googleCloudRunner = derive2 { name="googleCloudRunner"; version="0.4.1"; sha256="0mvwgx2i4n0qymib1a7v3n7fa88hpwqh6fffclasxsr1ncdxankq"; depends=[assertthat cli curl googleAuthR googleCloudStorageR httr jose jsonlite openssl plumber progress usethis yaml]; }; + googleCloudRunner = derive2 { name="googleCloudRunner"; version="0.5.0"; sha256="14nynl56gc8aj03wxbj243fz80j1wxd93ywfaivy1cgyfi3rid6z"; depends=[assertthat cli curl googleAuthR googleCloudStorageR googlePubsubR httr jose jsonlite openssl plumber usethis withr yaml]; }; googleCloudStorageR = derive2 { name="googleCloudStorageR"; version="0.7.0"; sha256="1yp8h87i17kald9pkr9icxd918n5vywk0h9q8lclip2slx9bry1p"; depends=[assertthat cli curl googleAuthR httr jsonlite openssl yaml zip]; }; googleCloudVisionR = derive2 { name="googleCloudVisionR"; version="0.2.0"; sha256="1n4gkmnwp9wadxz1izggxnpcpm4bz3imhq5y3i2szr8zwafcqqjv"; depends=[data_table glue googleAuthR jsonlite purrr]; }; googleComputeEngineR = derive2 { name="googleComputeEngineR"; version="0.3.0"; sha256="1s0qvnijzkja645lim373swk815n3s1292q6sk3q36ss70q42cfg"; depends=[assertthat future googleAuthR httr jsonlite]; }; @@ -10333,11 +10370,11 @@ in with self; { googleformr = derive2 { name="googleformr"; version="0.0.3"; sha256="0smykcjyqmk61ws5jk462l8x5hg0h9nwq55q5pqfgcq1j3yfniqh"; depends=[httr rvest xml2]; }; googlenlp = derive2 { name="googlenlp"; version="0.2.0"; sha256="0d0g18i3im2s5f14k69ym3vwf9a7zkaval3nwrip97xcl6kf4x9h"; depends=[dplyr httr jsonlite purrr readr rlang]; }; googler = derive2 { name="googler"; version="0.0.1"; sha256="1aayji3ncqxl58k29d93dbx05s9rp9bc63fl2cpl1cys7gilblxx"; depends=[jsonlite tibble]; }; - googlesheets = derive2 { name="googlesheets"; version="0.3.0"; sha256="11q07nxys72wkxx9mawmjyf20gvwvrb7h3gpa73h6lgh2vgrwnv8"; depends=[cellranger dplyr httr jsonlite purrr readr stringr tibble tidyr xml2]; }; googlesheets4 = derive2 { name="googlesheets4"; version="1.0.0"; sha256="0yncqwv9l5knyrv88ys5gwcv44hl1j0mbklpins6v7f9m9v7s40a"; depends=[cellranger cli curl gargle glue googledrive httr ids magrittr purrr rematch2 rlang tibble vctrs]; }; googleway = derive2 { name="googleway"; version="2.7.6"; sha256="07jyawybdrfb7rzxba6mqlz98slv6j1bdqv5lqc06zf5x84r0wwd"; depends=[curl googlePolylines htmltools htmlwidgets jpeg jqr jsonlite magrittr scales shiny viridisLite]; }; goric = derive2 { name="goric"; version="1.1-2"; sha256="004nx29wz191rp0naa73r762bf6lap931lwrxifhz7izl47jzfj0"; depends=[MASS Matrix mvtnorm nlme quadprog]; }; gorica = derive2 { name="gorica"; version="0.1.2"; sha256="0id0xqdw4rwqviym8l0a5gnl5a68ci5f4gn4bhywmzb6fh1nxj33"; depends=[bain lavaan limSolve lme4 MASS mvtnorm quadprog]; }; + gosset = derive2 { name="gosset"; version="0.3"; sha256="0symqdgihj3m4a8j0nl1xw9kj3n13k75m1b9dzyhpp60q017nd59"; depends=[BradleyTerry2 ggparty ggplot2 partykit patchwork PlackettLuce psychotools qvcalc tidyr]; }; gotop = derive2 { name="gotop"; version="0.1.2"; sha256="1dvcgz7ha637ixjqmgcwhvl3f9kpx4fdq8im40iz8xwnxqwmrlgx"; depends=[htmltools jsonlite]; }; govStatJPN = derive2 { name="govStatJPN"; version="0.1"; sha256="03sywa7rl5rblvv370mfszz5ngp850qf32yydy1fdx10lv5amrfl"; depends=[]; }; govdown = derive2 { name="govdown"; version="0.10.1"; sha256="00ndpp3v6z2497xlhhc92pa7w93qk9x8m6ibswj9dfh978d07028"; depends=[rmarkdown]; }; @@ -10345,7 +10382,7 @@ in with self; { goxygen = derive2 { name="goxygen"; version="1.0.3"; sha256="0825zl16ap0k3jqhrjw4hfsw97ils77jmf4yqq347k3bb8i3dm79"; depends=[citation gms pander stringi yaml]; }; gpairs = derive2 { name="gpairs"; version="1.3.3"; sha256="08m1ydrr239vnhjbl47mng3i2w9bqmd8fijrwsraq5ysvn826n27"; depends=[barcode colorspace lattice MASS vcd]; }; gpbStat = derive2 { name="gpbStat"; version="0.3.5"; sha256="1inmh8r02fn48p2f150d3prxlkf61549027vc64a3kyyk5q167ib"; depends=[data_table dplyr magrittr]; }; - gpboost = derive2 { name="gpboost"; version="0.7.1"; sha256="1gr01myg7kja6lza3nhgqh21smahca7dp8n7v53xqigfrbmnmq57"; depends=[data_table Matrix R6 RJSONIO]; }; + gpboost = derive2 { name="gpboost"; version="0.7.2"; sha256="05khnv1zfp0f8aj4ljkfrlwhqay565imr5ks636sgy6ivsb6c1w0"; depends=[data_table Matrix R6 RJSONIO]; }; gpclib = derive2 { name="gpclib"; version="1.5-6"; sha256="11jjgg74l8hy9jz4jylhriqnzv8jcf12y1bkx22v29z3fhgkwkps"; depends=[]; }; gpg = derive2 { name="gpg"; version="1.2.6"; sha256="17rvi3qff2kanqr3g20dzhn48bfh5sv57g0wsamndzcif7rhjhby"; depends=[askpass curl]; }; gpindex = derive2 { name="gpindex"; version="0.4.2"; sha256="1id5mmdmjw34y80cnjfxgldd83bzfifh0jk4ym4wp7h3dbpqr8n5"; depends=[]; }; @@ -10380,7 +10417,7 @@ in with self; { grapes = derive2 { name="grapes"; version="1.0.0"; sha256="079b7w2xhb0a481s7qihhka0l9ydkjdph0865wjjkcbpr4775p26"; depends=[magrittr]; }; grapesAgri1 = derive2 { name="grapesAgri1"; version="1.1.0"; sha256="0bsnxk7fqick6y76z6s1kwrg1y8spvg0awmdg5hk37g0f3wxgyas"; depends=[agricolae corrplot desplot dplyr ggplot2 ggpubr gridGraphics gtools Hmisc kableExtra knitr magrittr PairedData pastecs RColorBrewer Rdpack reshape2 rmarkdown shiny shinyWidgets summarytools]; }; graph3d = derive2 { name="graph3d"; version="0.2.0"; sha256="1c4pmx37nf4nm6svrn9dqr50gb2fckx8635zg0n4gnzgdca1iyv4"; depends=[htmlwidgets lazyeval]; }; - graph4lg = derive2 { name="graph4lg"; version="1.2.0"; sha256="0bfmi74hsd1hvvxls5a0gqdhxirjdzkjrpnq0p84na6sblmfbja6"; depends=[adegenet diveRsity ecodist foreign gdistance ggplot2 igraph knitr MASS Matrix pegas rappdirs raster Rdpack rmarkdown sf sp spatstat_core spatstat_geom spatstat_linnet stringr tidyr vegan]; }; + graph4lg = derive2 { name="graph4lg"; version="1.4.0"; sha256="0lllz8wcqb2qf0byn6npklk88nl0k6f7q21iv02q1x4kdhsd5d95"; depends=[adegenet diveRsity ecodist foreign gdistance ggplot2 igraph MASS Matrix pegas rappdirs raster Rdpack sf sp spatstat_geom spatstat_linnet stringr tidyr vegan]; }; graphTweets = derive2 { name="graphTweets"; version="0.5.3"; sha256="0jf52lclwvqgybdj6fknzx046bh6jgwxvqs4c5g1ii8f2lsz9y07"; depends=[combinat dplyr igraph magrittr purrr rlang tidyr zeallot]; }; grapherator = derive2 { name="grapherator"; version="1.0.0"; sha256="071by9b8figbsf4g0f8a8mgcdksjksc57mnlgggilw7py1yjnjlh"; depends=[BBmisc checkmate deldir ggplot2 lhs reshape2 vegan]; }; graphframes = derive2 { name="graphframes"; version="0.1.2"; sha256="1bv7d0sggwab4rd486ayw9gkb5ja5p5fin5pn92xnrmz8cgwsfxq"; depends=[forge sparklyr tibble]; }; @@ -10404,7 +10441,7 @@ in with self; { grec = derive2 { name="grec"; version="1.4.1"; sha256="1vy3idjvayzx9j9pf5bv5bxycjca3w3c4x4lzzbrdi3c97508sa8"; depends=[imagine raster]; }; greed = derive2 { name="greed"; version="0.5.1"; sha256="1g33wzcld9gh4x7nhbfb022xjrn2lz8dwf4aqir8ymm0sr6cln87"; depends=[cba future GGally ggplot2 ggpubr listenv Matrix Rcpp RcppArmadillo RSpectra]; }; greekLetters = derive2 { name="greekLetters"; version="0.0.7"; sha256="0r6c4y6dnd3mm5i7y5cy7xz3w2j7qkfkkvxg9ig138has6115gjj"; depends=[assertthat stringr]; }; - greeks = derive2 { name="greeks"; version="0.4.1"; sha256="0szs1hyzh31mvbys5c4bc96rlq5z0514q1jz0v8kb8l0209bb539"; depends=[dqrng magrittr matrixStats Rcpp]; }; + greeks = derive2 { name="greeks"; version="0.5.0"; sha256="0nwpw9iqczm4i2asqsh679s5pd2ia7ifdjaz6mdml1gdjkp85zlk"; depends=[dqrng magrittr Rcpp]; }; greenclust = derive2 { name="greenclust"; version="1.1.0"; sha256="198ix55x8cl5wx09p6ahzy3bvig86mvqf2qywjfilp6b4hnjgk7l"; depends=[]; }; gregRy = derive2 { name="gregRy"; version="0.1.0"; sha256="1b8c8wwp8r2v51ayy7rbav24wfz75z1pylg0p4vsasaw9p06dlbz"; depends=[dplyr magrittr purrr tidyr]; }; gremes = derive2 { name="gremes"; version="0.1.0"; sha256="1ih5303sis2icic1q13gh6h3qbb1fzw0j7pdla75csiffjc77hw7"; depends=[abind copula gRbase gRim igraph mev mvtnorm quadprog]; }; @@ -10425,8 +10462,8 @@ in with self; { gridGeometry = derive2 { name="gridGeometry"; version="0.2-0"; sha256="0y7y1ld03cqpibmjssid6n3n8gf98hi9ngcfbkh6acyzck812bc7"; depends=[polyclip]; }; gridGraphics = derive2 { name="gridGraphics"; version="0.5-1"; sha256="12yswy02j3h5wir7m5jnkhpjmb0sa4snn61vjd68i49qwsa6w219"; depends=[]; }; gridGraphviz = derive2 { name="gridGraphviz"; version="0.3"; sha256="1jz0d6kc8ci55ffm6dns8bhak9xnaq7mg5mpv3fk53lircn7mwl5"; depends=[graph Rgraphviz]; }; - gridSVG = derive2 { name="gridSVG"; version="1.7-2"; sha256="0vxhdz6a759q6q9lpmyjwkvrjr52dfz609jbwrd0pnfyffmmpzh0"; depends=[jsonlite XML]; }; - gridpattern = derive2 { name="gridpattern"; version="0.4.0"; sha256="19kqgp8nq6ylc6mw5a8h03c2b74x3h1jvg9lj7rknnvin4xnm74w"; depends=[glue memoise png rlang sf]; }; + gridSVG = derive2 { name="gridSVG"; version="1.7-4"; sha256="1jspjn56yrkx98hhs98npzm0k0kwpv8x1hg40kphx5ikhvincxmr"; depends=[jsonlite XML]; }; + gridpattern = derive2 { name="gridpattern"; version="0.5.1"; sha256="1yql0kwp7rs95w1iqh5qwd5s9bfpzrqqrr2z84z7l7n6yxkgfs9w"; depends=[glue memoise png rlang sf]; }; gridsampler = derive2 { name="gridsampler"; version="0.6"; sha256="0wqpqg9c372sv8zqks6v93gawiyfghw58hn7m8q45dxpqm16ss3k"; depends=[BiasedUrn ggplot2 plyr reshape2 shiny shinyBS shinythemes]; }; gridtext = derive2 { name="gridtext"; version="0.1.4"; sha256="131kw7nkfwksviwfifd2kk7lyvhxzzzv1nnj8rahkr3dik3akk61"; depends=[jpeg markdown png Rcpp RCurl rlang stringr xml2]; }; gripp = derive2 { name="gripp"; version="0.2.20"; sha256="0rshipm8rdynl19a4dsvvvlhkd0n4vjfkidwnv5iilc5ini7c4qr"; depends=[GA GenSA usethis]; }; @@ -10442,10 +10479,10 @@ in with self; { groupTesting = derive2 { name="groupTesting"; version="1.0.0"; sha256="00jy1gw6whslmfcqic99hmbxh2z75rj14cjzrm5mnpcajn37s66j"; depends=[pracma]; }; groupWQS = derive2 { name="groupWQS"; version="0.0.3"; sha256="1c5yrsfgkhbg1fcjbrilfmf0phjry5z34536yfizc8wbc7mmmj0c"; depends=[glm2 MASS rjags Rsolnp]; }; groupdata2 = derive2 { name="groupdata2"; version="2.0.0"; sha256="1s642fj0zwr6lw5dwf4y351igz0y2yl7g42wa8wi1wpa65p62553"; depends=[checkmate dplyr lifecycle numbers plyr purrr rearrr rlang tibble tidyr]; }; - grouped = derive2 { name="grouped"; version="0.6-0"; sha256="1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976"; depends=[MASS]; }; groupedSurv = derive2 { name="groupedSurv"; version="1.0.4.2"; sha256="015av2087i0vxh3axl91crwvparhpc4w2p2j9fq7wylg1gsarraa"; depends=[BH doParallel foreach qvalue Rcpp RcppEigen]; }; groupr = derive2 { name="groupr"; version="0.1.0"; sha256="1gych92dpyxg2vfm3h6djw61d9z2n6q2kvbz1xpq1p0zcyiw16gy"; depends=[dplyr purrr rlang tibble tidyr vctrs]; }; groupsubsetselection = derive2 { name="groupsubsetselection"; version="1.0.3"; sha256="118cj5xc8nbq4fs2gbzg1nhynixaflbl0si77gyy4ybw0drsz4nj"; depends=[]; }; + groupwalk = derive2 { name="groupwalk"; version="0.1.1"; sha256="1l7yk0nllap4q0sqybj4bl93399ddn6xc0bbrgrvsk9qvzywgd9q"; depends=[]; }; grove = derive2 { name="grove"; version="1.1"; sha256="0fqsj5dx7py7cin3hvfkxglh8v3x0dwj6cxy4h5vbddjl687db5x"; depends=[Rcpp RcppArmadillo wavethresh]; }; growfunctions = derive2 { name="growfunctions"; version="0.15"; sha256="0rj0kypjvqj7wlswzq4kxqizhlw56zgaydf37cbfjm5090h43fzi"; depends=[ggplot2 Rcpp RcppArmadillo reshape2 spam]; }; growth = derive2 { name="growth"; version="1.1.1"; sha256="05yxjlbv1i4ly8yp3aqbxzq1z2mp7sfx7xyqw48qsdv0acqai7jy"; depends=[rmutil]; }; @@ -10468,7 +10505,6 @@ in with self; { gsalib = derive2 { name="gsalib"; version="2.1"; sha256="1k3zjdydzb0dfh1ihih08d4cw6rdamgb97cdqna9mf0qdjc3pcp1"; depends=[]; }; gsarima = derive2 { name="gsarima"; version="0.1-5"; sha256="0nmn4hlvhl8dw7pkpf010x9qjd6w8drdlcj47qv0sap8wngrwhzg"; depends=[MASS]; }; gsbDesign = derive2 { name="gsbDesign"; version="1.0-2"; sha256="1q958l9f03lk0wpcgqxqwcbj6jlgkmj6vj4gyj51pp8kfkxal59x"; depends=[gsDesign lattice]; }; - gsbm = derive2 { name="gsbm"; version="0.2.1"; sha256="16j4g0wl9phmx85dbrzxsdjcv0nnipgj214fvbz9m6n66khr5pkp"; depends=[doParallel foreach Matrix RSpectra softImpute]; }; gscaLCA = derive2 { name="gscaLCA"; version="0.0.5"; sha256="12zksjp0wh95qg7vxh22z652hk35r9sp0qxrms4y1laixa8vr71x"; depends=[devtools doSNOW fastDummies fclust foreach ggplot2 gridExtra MASS nnet progress psych stringr]; }; gscounts = derive2 { name="gscounts"; version="0.1-4"; sha256="1wcna4bcm38ivmys5hv30b72bvn0ja0n30zhwns94n4v2z1d24k4"; depends=[Rcpp]; }; gset = derive2 { name="gset"; version="1.1.0"; sha256="1gingqw6la8n7mnl47wpz9sicxca4zi2m8p35n6cnihrniibhajc"; depends=[Hmisc MCMCpack mvtnorm]; }; @@ -10488,13 +10524,13 @@ in with self; { gsubfn = derive2 { name="gsubfn"; version="0.7"; sha256="00j6b8b6xsx6v370h220x233rpk6asca78165y3d48jpwvwisdc9"; depends=[proto]; }; gsw = derive2 { name="gsw"; version="1.0-6"; sha256="1sqxxbghsii5lph4r9j6w752zd95xxi2hwfbz6d7jxsplwyyfz0l"; depends=[]; }; gsynth = derive2 { name="gsynth"; version="1.2.1"; sha256="1a4s8ghxc5zw295ys8hp22nx93gc1vyakn7r1dcq3ghikh02nzaa"; depends=[abind doParallel doRNG foreach future GGally ggplot2 lfe MASS mvtnorm Rcpp RcppArmadillo]; }; - gt = derive2 { name="gt"; version="0.3.1"; sha256="06b029z32za010pfjj1pp5nqjamc58k87nxj5fsx2mpi8vjgxlfx"; depends=[base64enc bitops checkmate commonmark dplyr fs ggplot2 glue htmltools magrittr rlang sass scales stringr tibble tidyselect]; }; + gt = derive2 { name="gt"; version="0.4.0"; sha256="1sqb2a9amc0xwbm7vshs290aikhy9bd744qyx18j7c45rp6p8v9g"; depends=[base64enc bitops checkmate commonmark dplyr fs ggplot2 glue htmltools magrittr rlang sass scales stringr tibble tidyselect]; }; gt4ireval = derive2 { name="gt4ireval"; version="2.0"; sha256="1d567iz57xqszm45l1wq4n2qrrmyz8ssll1vllfmncb9ibbnx4f3"; depends=[]; }; gtWAS = derive2 { name="gtWAS"; version="1.1.0"; sha256="1kbkz0iwc3gfj982m93m2wdr1xm5rhy70k6bdc7kms9ivh5fh6sh"; depends=[]; }; gtable = derive2 { name="gtable"; version="0.3.0"; sha256="1lyncxf2dqdjgw1071cn9c8zwzkz6sldnd5cgmicf70bc726qf7x"; depends=[]; }; gtcorr = derive2 { name="gtcorr"; version="0.2-1"; sha256="1n56zmyv58jwr95p453jb86j82pdnq57gfc8m15jndjc9p31zl0m"; depends=[]; }; gte = derive2 { name="gte"; version="1.2-2"; sha256="1x528iakyjhh4j92cgm6fr49a3rdi4cqy28qhsfr2dwvxzxchl6h"; depends=[survival]; }; - gtfs2gps = derive2 { name="gtfs2gps"; version="1.5-4"; sha256="0hqqi4gm6zbrys0yd0ayyas2pxfx4r98fi45rfmdzffrx8qd0p9r"; depends=[data_table furrr future gtfsio lwgeom magrittr pbapply progressr raster Rcpp readr rgdal rgeos sf sfheaders sp units]; }; + gtfs2gps = derive2 { name="gtfs2gps"; version="2.0-1"; sha256="10v8b7qs0s5w4api08acjgll8zs1frz4ar02g68gmipwks5d6mvg"; depends=[data_table furrr future gtfsio lwgeom magrittr pbapply progressr Rcpp readr sf sfheaders terra units]; }; gtfsio = derive2 { name="gtfsio"; version="1.0.0"; sha256="05210ii5b754ryk296knqm3sf9yi5xwvcrq6rb9w71njqgvykwcj"; depends=[data_table zip]; }; gtfsrouter = derive2 { name="gtfsrouter"; version="0.0.5"; sha256="0yxgc4pi0g2wqswvwba0ij263i8b8p6wgsy6hbvklq0gim616shi"; depends=[cli data_table geodist Rcpp]; }; gtfstools = derive2 { name="gtfstools"; version="1.0.0"; sha256="0qwpnhjl80g0h0samsh8hs3df85ax329aaaxgjzn5b8h6xi31p6z"; depends=[checkmate cpp11 data_table gtfsio sf sfheaders units]; }; @@ -10503,18 +10539,17 @@ in with self; { gtop = derive2 { name="gtop"; version="0.2.0"; sha256="1nvvbf181x0miw3q0r2g0nklz29ljdsd07cazaajfls7pmhi0xw9"; depends=[hts lassoshooting quadprog]; }; gtrendsR = derive2 { name="gtrendsR"; version="1.5.0"; sha256="15jpda67c81j9qsjcx1kffk0my198z7myafsdw91chj7hjzyw6kl"; depends=[anytime curl ggplot2 jsonlite]; }; gtsummary = derive2 { name="gtsummary"; version="1.5.2"; sha256="1vmzlpn7h68cgxpnsh49qj6xzanhrxa2v3d1f4s96y6kwla0s395"; depends=[broom broom_helpers cli dplyr forcats glue gt knitr lifecycle purrr rlang stringr tibble tidyr]; }; - guaguas = derive2 { name="guaguas"; version="0.2.0"; sha256="1b5bmjd3l9npmjlmd3qq3kxcrm1dqv8m60s89fcybjlaf0942ms8"; depends=[]; }; + guaguas = derive2 { name="guaguas"; version="0.3.0"; sha256="0ngdwg297ndn763vx0qnvcsy5bhsr026hv8hvwgrz5w32mpw252d"; depends=[]; }; guardianapi = derive2 { name="guardianapi"; version="0.1.1"; sha256="17xmmr6pfzhdnmf45jzvk84gbfnmlw1qfv1gqjaw85vgm8b6jn6l"; depends=[dplyr httr jsonlite rlang tibble]; }; guess = derive2 { name="guess"; version="0.1"; sha256="198pxi0yipgm9wccpj3y4a0gkibhyxcmb7v5dz7ipzrk44ha5g6j"; depends=[Rsolnp]; }; - guf = derive2 { name="guf"; version="1.0.2"; sha256="1dfmja2da211pcid4hr7x9q0sgz37756rpykm1ax862avdl8hsmc"; depends=[]; }; - guiplot = derive2 { name="guiplot"; version="0.1.0"; sha256="0h14ki1lwr9gln9yqhg2y81sgnz60sjy31cygxplapf215xbmjs2"; depends=[DT ggplot2 magrittr R6 rlang shiny svglite]; }; + guiplot = derive2 { name="guiplot"; version="0.2.0"; sha256="03anbbd5iqmjv12aqgcmii5s0shig0vikz1rhabjrhpz9scabc53"; depends=[DT ggplot2 magrittr R6 rlang shiny svglite]; }; gumbel = derive2 { name="gumbel"; version="1.10-2"; sha256="0s9idcrssnl683abwky9zvqylciy0b51z935yfvb2bm8b0b0b4ij"; depends=[]; }; gumboot = derive2 { name="gumboot"; version="1.0.0"; sha256="0c31rxkq08wzycwiwii7q166pzwfbdg35259rymwy0g38pnjnjp6"; depends=[dplyr ggplot2 hydroGOF lubridate ncdf4 reshape2 stringr]; }; gunit = derive2 { name="gunit"; version="1.0.0"; sha256="0vmm47f21n9f334aj38gzrmv1c4sp76njk95ld9gv6fcfxgsipyh"; depends=[magrittr stringr tibble units]; }; gunsales = derive2 { name="gunsales"; version="0.1.2"; sha256="02vz16lhym72vvf48yai1g371wygdlmi63a6ylc147l0b69jgw31"; depends=[data_table dplyr ggplot2 seasonal x13binary zoo]; }; gustave = derive2 { name="gustave"; version="0.4.3"; sha256="08az0j9cfalf2jf6qhsxhml3ranvacan85xp4d6zqdrgly00qsr2"; depends=[Matrix]; }; gutenbergr = derive2 { name="gutenbergr"; version="0.2.1"; sha256="0rsk583x4i1ac6rbxr5f5cmczr4525bkv20jw7777n8fwn91zvyr"; depends=[dplyr lazyeval purrr readr stringr urltools]; }; - gvc = derive2 { name="gvc"; version="6.2.0"; sha256="1m15kjdh1c5x1d0ly6hz0svssv1hn03ijrkp7dgipxcldcnv5rq9"; depends=[decompr diagonals]; }; + gvc = derive2 { name="gvc"; version="6.2.1"; sha256="1ndg0hmnzn30i5xqp454lp5gwmfl4x3fwpcmjzj3by9i1aa8z2a3"; depends=[decompr diagonals]; }; gvcR = derive2 { name="gvcR"; version="0.1.0"; sha256="0r54924b9a65k11p8y3p7jxbvmpb7s7vs87v65hhl98gxacj5hk8"; depends=[dplyr eda4treeR lme4 magrittr]; }; gvcm_cat = derive2 { name="gvcm.cat"; version="1.9"; sha256="1kwfcmnl1ivv1lh3zxccwls2xfyx3l8v71ngc0bg6441i81d4xp5"; depends=[MASS Matrix mgcv]; }; gvlma = derive2 { name="gvlma"; version="1.0.0.3"; sha256="16dhd407bwjs91c3p9kk43646197s7n9vbyghxb4ckrpv3fsaxp0"; depends=[]; }; @@ -10522,17 +10557,14 @@ in with self; { gwasforest = derive2 { name="gwasforest"; version="1.0.0"; sha256="122fg4pc409lvw4yvrc8ijm6d6j29b4aacd319a16caxkkydgwlb"; depends=[colorspace data_table dplyr ggplot2 ggrepel glue]; }; gwasrapidd = derive2 { name="gwasrapidd"; version="0.99.12"; sha256="0pn7mdip361s2l3nqmjl0zqmr0g5406cfr1v5l20m2gkacxqfds6"; depends=[assertthat concatenate dplyr glue httr jsonlite lubridate magrittr pingr plyr progress purrr rlang stringr testthat tibble tidyr urltools]; }; gwavr = derive2 { name="gwavr"; version="0.1.0"; sha256="04myyx5jll0xiarsdj513rlqg5hci1204kyzfknff874l2qxm2j7"; depends=[dplyr httr jsonlite leaflet leaflet_extras magrittr miniUI nhdplusTools promises purrr scales sf shiny shinyWidgets tidyr units]; }; - gwdegree = derive2 { name="gwdegree"; version="0.1.1"; sha256="0p06hjp7vay83kbpqsgfr1d8z3ayv483rxbv86fdka94gvi1sjyc"; depends=[dplyr ergm ggplot2 gtools magrittr network scales shiny shinydashboard sna tidyr]; }; gwer = derive2 { name="gwer"; version="3.0"; sha256="0jiq5v37mbn6y7vl5gs8qahb796jrfqj0m54sd38vim8yhhjwfy8"; depends=[assertthat glogis GWmodel maptools Matrix sp spData spdep spgwr]; }; - gwerAM = derive2 { name="gwerAM"; version="1.0"; sha256="1c3rzd1jf52a4dn63hh43m9s9xnjvqn67amlm9z1ndrnn6fwfg1b"; depends=[MASS Matrix]; }; gwfa = derive2 { name="gwfa"; version="0.0.4"; sha256="0jz82d9lfyd07z0jjlfqzsg7a3vnyz0s1j0rrb5sg9pnvcfjk9qy"; depends=[Rcpp sp]; }; gwpcormapper = derive2 { name="gwpcormapper"; version="0.1.3"; sha256="0d8skx6rxas5qvhg7ykhymrzd6dawj45421vr66r4wi4hbdfjbzx"; depends=[attempt config corpcor crosstalk dplyr DT geodist glue golem htmltools leaflet pkgload plotly processx Rcpp sf shiny shinydashboard shinyjs viridis]; }; gwrpvr = derive2 { name="gwrpvr"; version="1.0"; sha256="0x15nv2pfv99c04lgs6q6hgczarld34xc4aqw9bn179m7j02v6m3"; depends=[]; }; gwrr = derive2 { name="gwrr"; version="0.2-1"; sha256="1fjk217pimnmxsimqp9sn02nr1mwy3hw3vsr95skbfsd6vdda14d"; depends=[fields lars]; }; - gwsem = derive2 { name="gwsem"; version="2.1.4"; sha256="0qqcbkxkkfwraz750wvk1f86mqy6f2ndkspd8qr0ypnnlh3i0yzl"; depends=[BH data_table lifecycle OpenMx qqman Rcpp]; }; gym = derive2 { name="gym"; version="0.1.0"; sha256="0vcwzgawqwjsf65hr1mbjkz3px8zsibfkn42jpsg39n13jpfjq8v"; depends=[httr jsonlite]; }; gyro = derive2 { name="gyro"; version="0.1.0"; sha256="0knghb9hb9f1vli860qcaklb4d6pfmzyyx5ffyld7mimwmcwxyns"; depends=[clipr cxhull Morpho purrr rgl rstudioapi Rvcg]; }; - h2o = derive2 { name="h2o"; version="3.36.0.2"; sha256="1rkjq72g08r24q1y3g7nx60jr2bqv06hkwx2i4wkggrl0c30wsfv"; depends=[jsonlite RCurl]; }; + h2o = derive2 { name="h2o"; version="3.36.0.3"; sha256="0jn1nkh5vgcx6dqzja64fr3qlpn34r7ajgnivqdfqkcjhbj6j8qn"; depends=[jsonlite RCurl]; }; h2o4gpu = derive2 { name="h2o4gpu"; version="0.3.3"; sha256="004sskj3a1mzjfh86m0rq02z1f3kd6650bzv1d3j8pj0xdmqb86c"; depends=[magrittr reticulate]; }; h3jsr = derive2 { name="h3jsr"; version="1.2.3"; sha256="0amj7ks83zisy18fgnsy6zx4rg88ldyr0vhanh96dw3fbhhdh7kc"; depends=[geojsonsf sf tidyr V8]; }; hBayesDM = derive2 { name="hBayesDM"; version="1.1.1"; sha256="16ilkmhyb7lgfd8s2qhjg952gfwkmfg154w4nw306j988a2ivc6h"; depends=[BH data_table ggplot2 loo Rcpp RcppEigen rstan StanHeaders]; }; @@ -10541,16 +10573,15 @@ in with self; { hNMF = derive2 { name="hNMF"; version="1.0"; sha256="08xn9i24dcykvbcsqzmk33li5fm1alkvcmq2fp0a2ysw4lvwfwqs"; depends=[MASS NMF nnls oro_nifti rasterImage]; }; hR = derive2 { name="hR"; version="0.2.50"; sha256="1zslalsb2zi6b91fb2k1m0vsbsdazls2gnnl7gv2xqvn6kdh4nf6"; depends=[data_table knitr rhandsontable shiny]; }; hSDM = derive2 { name="hSDM"; version="1.4.1"; sha256="1jwqjzr0zpckzh2jpqh17v6ypq4mzn5khlv6p37y59zz8bh9mvxp"; depends=[coda]; }; - haarfisz = derive2 { name="haarfisz"; version="4.5"; sha256="1qmh4glwzqwqx3pvxc71rlcimp1l0plgdf380v9hk0b4gj7g3pkf"; depends=[wavethresh]; }; hablar = derive2 { name="hablar"; version="0.3.0"; sha256="12gm5n3p2kmjwhkf60n4bjn3lrj7lrs5sgmvads9sfp2ckhaiysk"; depends=[dplyr lubridate purrr]; }; hackeRnews = derive2 { name="hackeRnews"; version="0.1.0"; sha256="0vrdbk4dxbykb3hs35nxkl3s2ds92gs5qz66p85w8j5zjmwbw2x6"; depends=[future_apply httr jsonlite tibble]; }; hacksaw = derive2 { name="hacksaw"; version="0.0.2"; sha256="1ls4l53bsaxyd6lwka9z9sb6ypa2ymbxpfxhsj9k966031jv2vk3"; depends=[dplyr magrittr purrr rlang tibble tidyselect zeallot]; }; - hacksig = derive2 { name="hacksig"; version="0.1.1"; sha256="1gf80drfriw0x86mf4bwlvjypz1q7vcjk35c9df5mms6ly1dnfkc"; depends=[dplyr future_apply rlang tibble tidyr]; }; + hacksig = derive2 { name="hacksig"; version="0.1.2"; sha256="0sc35vyi00r2b3hgn1xw2zffd704adschjwhx0niv5a1l33dxbkp"; depends=[dplyr future_apply rlang tibble tidyr]; }; hadron = derive2 { name="hadron"; version="3.1.2"; sha256="04qd3lb6im5shf24ss88jkskab1rwn7m2d94x0ybbmfcg3l5dhm0"; depends=[abind boot dplyr R6 Rcpp stringr]; }; hagis = derive2 { name="hagis"; version="3.1.3"; sha256="1x2vnym7da8kbj3ifi09z9dlqgprh73n03535gankqzd6pd7n1k4"; depends=[data_table ggplot2 pander]; }; hakaiApi = derive2 { name="hakaiApi"; version="1.0.0"; sha256="0wk0qmg2g1hj6bsvhr5xys02l32adn1qypv8rdma643qfvlcp46c"; depends=[httr R6 readr tibble]; }; - hal9001 = derive2 { name="hal9001"; version="0.4.2"; sha256="1s9yp4yk89s0r762svgicpcnlndqgqqgvb3h920707nnj9vdlqfq"; depends=[assertthat data_table glmnet Matrix origami Rcpp RcppEigen stringr]; }; - haldensify = derive2 { name="haldensify"; version="0.2.2"; sha256="1g7ar16303gpnpx74krwmvjxip54rfbh0n9cxwzilyrn4bghlfsj"; depends=[assertthat data_table dplyr future_apply ggplot2 hal9001 matrixStats origami Rdpack rlang rsample scales tibble]; }; + hal9001 = derive2 { name="hal9001"; version="0.4.3"; sha256="132qnrk6rm2qc5gw17iw61plx1ghnyzi7km8bp36vnqn19x9wj7j"; depends=[assertthat data_table glmnet Matrix origami Rcpp RcppEigen stringr]; }; + haldensify = derive2 { name="haldensify"; version="0.2.3"; sha256="071lgx6j92n40bjlrp3khmnavvkla371rkm1ssx20ig5pkay23pw"; depends=[assertthat data_table dplyr future_apply ggplot2 hal9001 matrixStats origami Rdpack rlang rsample scales tibble]; }; halfcircle = derive2 { name="halfcircle"; version="0.1.0"; sha256="1gbqbv3cn8w09i3f2ji3qq0snb4fy9243y12agw686fx46dfmhxs"; depends=[scales]; }; hamlet = derive2 { name="hamlet"; version="0.9.6"; sha256="076fh28grlrv38qywshi79m84jsz1ck9k4n0rg4svvr3gqkdbcn2"; depends=[]; }; handlr = derive2 { name="handlr"; version="0.3.0"; sha256="0l0jwlslz2pyg7q447k56acfhgmx5njsriqdrwd02zzbsc3g6wm5"; depends=[crul jsonlite mime urltools xml2 yaml]; }; @@ -10563,12 +10594,12 @@ in with self; { haploR = derive2 { name="haploR"; version="4.0.6"; sha256="1cg92v64xdzmr5hbjhd11rz6rkdddsxcxkqdgbj5hd1ldqsrjj45"; depends=[DT httr plyr RCurl RJSONIO RUnit tibble XML]; }; haplotyper = derive2 { name="haplotyper"; version="0.1"; sha256="0pcshlh29c4zazhkcq4371kqh9inrbx494y5a1qb1k2c92fkax31"; depends=[]; }; haplotypes = derive2 { name="haplotypes"; version="1.1.2"; sha256="07grdwli0kxnnnf7mg8z7gjpny88h71vf867g50f08yybgb46y70"; depends=[ape network phangorn plotrix sna]; }; - happign = derive2 { name="happign"; version="0.1.2"; sha256="1p3nrlirwd4kkffj2khw2lch1a8ixq7754vi77nmf9l5783h8y0x"; depends=[curl dplyr httr magrittr sf stars stringr tidyr xml2]; }; + happign = derive2 { name="happign"; version="0.1.3"; sha256="099zmz8dsr6hwb9lxlrkndcq5sfm327n0fpxzqr3cr4f52pgwvmx"; depends=[curl dplyr httr magrittr sf stars tidyr xml2]; }; happytime = derive2 { name="happytime"; version="0.1.0"; sha256="03iblwb6w2dh9sibfi4nlswidck13hzsn7123838zp4sxfnrp041"; depends=[]; }; hapsim = derive2 { name="hapsim"; version="0.31"; sha256="0jw6iw89d4y8wjy58biv40szp123ql7frz1mmdjdxljmwaby963h"; depends=[MASS]; }; hardhat = derive2 { name="hardhat"; version="0.2.0"; sha256="0a4nq93cmps5xy8h0qsv6xyzrbsz9ka4iwkrvb8m8v10wq7wm5wl"; depends=[glue rlang tibble vctrs]; }; harmonicmeanp = derive2 { name="harmonicmeanp"; version="3.0"; sha256="17irfw8788yhh36698p9w8wab6wcin1yzfinlbs3gdg70d42zcnd"; depends=[FMStable]; }; - harmonizer = derive2 { name="harmonizer"; version="0.2.0"; sha256="16js4dnrqzlvmc8s34aic1rchp1nwalbyx3v52zzxbln8f3xxacs"; depends=[]; }; + harmonizer = derive2 { name="harmonizer"; version="0.2.1"; sha256="1zqb375i2bqlw2ag184implm09ydh9g09wbgv6mbnf1gx49qk1dr"; depends=[]; }; harmony = derive2 { name="harmony"; version="0.1.0"; sha256="0jkj9y4j6ja2d6y5j0akmkkgpppprk65i6bwwhs163g918i8qng0"; depends=[cowplot dplyr ggplot2 irlba Matrix Rcpp RcppArmadillo RcppProgress rlang tibble tidyr]; }; harrietr = derive2 { name="harrietr"; version="0.2.3"; sha256="0n6vsqysj4ijh06z6nqmj8x1z4w9711dxhbfp8p8fwi0l75pj0cj"; depends=[ape dplyr ggtree lazyeval magrittr rlang tidyr]; }; harrypotter = derive2 { name="harrypotter"; version="2.1.1"; sha256="1j3sv0rpp4lcrf09j4a3an4lkwi2x1z18iv62fk6c2kpp9b14b8r"; depends=[ggplot2 gridExtra]; }; @@ -10585,13 +10616,14 @@ in with self; { hbim = derive2 { name="hbim"; version="1.0.3"; sha256="1480nydsi2xj7zbfk4zw24mhsjadf83d827kpqzbmn0yh6srp3ps"; depends=[mvtnorm]; }; hbm = derive2 { name="hbm"; version="1.0"; sha256="0qz28azm91a6pbss1mfc47a21d3q9rs3mmw0kgwc7i2a2m43mysm"; depends=[doParallel foreach Matrix]; }; hbmem = derive2 { name="hbmem"; version="0.3-3"; sha256="1rajd5h9gp0rrpc0q0m0fx37mv2n70da3gnfvvnjc5a77mzfyqkp"; depends=[]; }; - hbsae = derive2 { name="hbsae"; version="1.0"; sha256="1iwmpi0pn5fxyxkwqkbmy6w1f1wcx0p809jnviim0ypwib32mhh7"; depends=[arm Matrix]; }; + hbsae = derive2 { name="hbsae"; version="1.2"; sha256="0fg782gxivkkwhqvxf09j1q20f2dqm7bd1y9bp99fy7mg88zp0gn"; depends=[Matrix]; }; hcandersenr = derive2 { name="hcandersenr"; version="0.2.0"; sha256="0r8z8kb9hwvgcsxbd7arbmqclhwlbcjpnf3p9mp5vgyxm84iz515"; depends=[]; }; hcc = derive2 { name="hcc"; version="0.54"; sha256="14b3pamkywb0wsjpbm0wpflcds0b5mfymvgk92rmf6ngz1bkpdbq"; depends=[]; }; hcci = derive2 { name="hcci"; version="1.0.0"; sha256="11piy1ajg3j3dbh66szzf7lhc3x28fz75ai39vlx0gl5nc2v5zs5"; depends=[]; }; hchinamap = derive2 { name="hchinamap"; version="0.1.0"; sha256="1pia593g50zf3286f9g51slkvrpj1iy7lws9d7a3nqgb2v3yji1y"; depends=[htmlwidgets]; }; hcp = derive2 { name="hcp"; version="0.1"; sha256="0hhcy70g13kclxv733kgiys7qn5bi28abpkli5n2vj0a58ac333m"; depends=[]; }; hctrial = derive2 { name="hctrial"; version="0.1.0"; sha256="19li8i8hx0r3b63q80cnj6pr72rdbmykxq0kcfbn4azq3sdd046y"; depends=[clinfun GenBinomApps]; }; + hdImpute = derive2 { name="hdImpute"; version="0.1.0"; sha256="1n0y3k4rbjq1b2cr13c6axnx2c253ahch6ys53sb5v15xns78954"; depends=[dplyr magrittr missForest missRanger plyr purrr tibble tidyselect tidyverse usethis]; }; hda = derive2 { name="hda"; version="0.2-14"; sha256="0azfxyws7yslcqplfddmdp5ngk91j5h7llvrg77yh5z0kkd09j1b"; depends=[e1071]; }; hdbinseg = derive2 { name="hdbinseg"; version="1.0.1"; sha256="0fy9cqrygsnxkb3nxg56md19svrvkbijpxkqfk9p18cj5ibwrq94"; depends=[doParallel foreach iterators Rcpp RcppArmadillo]; }; hdbm = derive2 { name="hdbm"; version="0.9.0"; sha256="0lvaica195chl6bb10wvvr7fbmh8b954fpxcm9r0gyp0d0i2a2w4"; depends=[Rcpp RcppArmadillo]; }; @@ -10610,10 +10642,10 @@ in with self; { hds = derive2 { name="hds"; version="0.8.1"; sha256="1smg5ixrl7f2x3wn7s5i26dyadn5sigpf4jsk236z1bhnz617ax4"; depends=[survival tensor]; }; healthcareai = derive2 { name="healthcareai"; version="2.5.0"; sha256="05qsmgrnaagnavlrs9c6j01j9c3lcc9j7cmbrx3y6lb6pf4zs195"; depends=[caret cowplot data_table dplyr e1071 generics ggplot2 glmnet lubridate MLmetrics purrr ranger recipes rlang ROCR stringr tibble tidyr xgboost]; }; healthfinance = derive2 { name="healthfinance"; version="0.1.0"; sha256="163zhdd5mqp0q872dmr3xzw2ppapnwp46rr7vkkfnglz635nxvpz"; depends=[ggplot2 lubridate readr scales shiny tibble]; }; - healthyR = derive2 { name="healthyR"; version="0.1.7"; sha256="1ci1am982ym9xjrxalwr6k2ygkf4nycjmnwh2dzi4y8s4j9n1jwn"; depends=[cowplot dplyr ggplot2 ggrepel lubridate magrittr plotly purrr rlang scales sqldf stringr tibble tidyr timetk writexl]; }; - healthyR_ai = derive2 { name="healthyR.ai"; version="0.0.5"; sha256="0jzzzyjhm5v570qb04n10pm2jv1gin650dgjsbw96m2k2x0f8758"; depends=[broom dplyr forcats ggplot2 ggrepel h2o magrittr purrr recipes rlang rsample tibble tidyr]; }; + healthyR = derive2 { name="healthyR"; version="0.1.8"; sha256="0phqlf38g38rrvp1h8cvcfqrnb4bik2ndhsli5nkhlhywh4azjfm"; depends=[cowplot dplyr ggplot2 ggrepel lubridate magrittr plotly purrr rlang scales sqldf stringr tibble tidyr timetk writexl]; }; + healthyR_ai = derive2 { name="healthyR.ai"; version="0.0.6"; sha256="0vpry1ixnwh6nfjx36xk6pql57ym84xzw5jmanzbnbsf8jnnq1zy"; depends=[broom dplyr forcats ggplot2 ggrepel h2o magrittr purrr recipes rlang tibble tidyr]; }; healthyR_data = derive2 { name="healthyR.data"; version="1.0.1"; sha256="18b7aqdy9a0ldf2ib2d0a07k6bfmgdp61y8hl8yl19v35nqj6dvh"; depends=[]; }; - healthyR_ts = derive2 { name="healthyR.ts"; version="0.1.7"; sha256="04sihmw238ddd3c9zp16lf579czzahxdbikwn5g26c6g8a5z44wp"; depends=[cowplot dplyr earth forcats ggplot2 lubridate magrittr modeltime parsnip plotly purrr recipes rlang stringi tibble tidyquant tidyr timetk workflowsets]; }; + healthyR_ts = derive2 { name="healthyR.ts"; version="0.1.8"; sha256="09p3bc4ajdhr13k8hgwa6mha9p6l5p61fq4sgki0w6f2g2gcqrkq"; depends=[cowplot dplyr earth forcats ggplot2 lubridate magrittr modeltime parsnip plotly purrr recipes rlang stringi tibble tidyquant tidyr timetk workflowsets]; }; healthyverse = derive2 { name="healthyverse"; version="1.0.2"; sha256="1ngxadwpd62lx6y41szqckv1f2j8ja1hy4qx08vccpjbmlcg8v1b"; depends=[cli crayon dplyr healthyR healthyR_ai healthyR_data healthyR_ts magrittr purrr rlang rstudioapi tibble TidyDensity]; }; heapsofpapers = derive2 { name="heapsofpapers"; version="0.1.0"; sha256="1b88ff4j6rh0qif43iyb12wipkkjmp5qx33qfzgffr5m54df4kfy"; depends=[aws_s3 curl dplyr fs magrittr rlang scales]; }; heatex = derive2 { name="heatex"; version="1.0"; sha256="0c7bxblq24m80yi24gmrqqlcw8jh0lb749adsh51yr6nzpap6i9n"; depends=[]; }; @@ -10665,7 +10697,7 @@ in with self; { hhcartr = derive2 { name="hhcartr"; version="1.0.0"; sha256="104xy3ihpi031pyzifnpc0jfq68gsbc12gzv6hp1vjrgy0nqw5l1"; depends=[bookdown captioner checkmate DiagrammeR DiagrammeRsvg ggplot2 hash Matrix rsvg]; }; hhh4contacts = derive2 { name="hhh4contacts"; version="0.13.1"; sha256="1cqwn09iqgh6131cm4b5j0kx7k5vil0ak42v064g4maayj0yqy7p"; depends=[surveillance]; }; hhi = derive2 { name="hhi"; version="1.2.0"; sha256="1yl52c3nqdi8v60sr01l0vv8359803dm2i4c9ifazgj3h3a4h0yp"; depends=[ggplot2]; }; - hhsmm = derive2 { name="hhsmm"; version="0.2.4"; sha256="00rzjxdw3p334yr6in9vfxzf3s347d6369ad8fnmgnzk8d14l6p0"; depends=[CMAPSS cpr MASS mice mvtnorm psych Rcpp Rdpack]; }; + hhsmm = derive2 { name="hhsmm"; version="0.3.1"; sha256="1jxic441bg7g15fv4jvl6xfrl61781s7p7x05wcfqayia82c76vr"; depends=[CMAPSS cpr magic MASS mice mvtnorm progress psych Rcpp Rdpack splines2]; }; hht = derive2 { name="hht"; version="2.1.4"; sha256="0i4rjr507k555pvf7q6y6b3df56rjc6igrv8dk0mhyfws49jw9m9"; depends=[EMD fields spatstat spatstat_core spatstat_geom spatstat_linnet]; }; hiPOD = derive2 { name="hiPOD"; version="1.0"; sha256="1i15ickz2s0kffh99qq30pl5hsl0lbj0kp55jnbv4x72hndzhmla"; depends=[rgl]; }; hibayes = derive2 { name="hibayes"; version="1.0.1"; sha256="0ah81gwbsz2j466jwk39w6h4fi02ivwxi9ppir9svyf1nxig409j"; depends=[BH bigmemory Matrix Rcpp RcppArmadillo RcppProgress]; }; @@ -10691,7 +10723,7 @@ in with self; { highlightHTML = derive2 { name="highlightHTML"; version="0.2.5"; sha256="0j3zrvil7k5wfsbgfj2b4nbx77qsj3b4makv5angcf8s59p7q80r"; depends=[]; }; highmean = derive2 { name="highmean"; version="3.0"; sha256="1lq7z0l1737j4wvsy7951405afylyywp7vf2i7girzh459fdfzpc"; depends=[MASS mnormt mvtnorm]; }; highr = derive2 { name="highr"; version="0.9"; sha256="0kgdv2vf1lz3b5kbal9s83gg6812nw7fvrq0rkyr0v4k1lwi3zxy"; depends=[xfun]; }; - highriskzone = derive2 { name="highriskzone"; version="1.4.6"; sha256="1nl3l7zq4j0vmkflkl716519llpbixjfknvb6razrrdwi6mml250"; depends=[deldir fields ks maps Matrix mvtnorm rgeos spatstat spatstat_core spatstat_geom]; }; + highriskzone = derive2 { name="highriskzone"; version="1.4.7"; sha256="1ylbmk6a2d6prwips2da6syzxpbfhda93abdw98pjj658p7l3m0r"; depends=[deldir fields ks maps Matrix mvtnorm rgeos spatstat spatstat_core spatstat_geom spatstat_random]; }; higlasso = derive2 { name="higlasso"; version="0.9.0"; sha256="09d500jsxlrv658i90xnb2wj1ad89v1iwb6y7vascyvg3cff104h"; depends=[gcdnet gglasso purrr Rcpp RcppArmadillo]; }; higrad = derive2 { name="higrad"; version="0.1.0"; sha256="0q9av8qyvmvgy6a3l7svcmbkjjgnp4iny1cld4g3qsbaz3yp3jaj"; depends=[Matrix]; }; hilbertSimilarity = derive2 { name="hilbertSimilarity"; version="0.4.3"; sha256="1251df3q7c7c69f8q9y9bxj210bk2dh80c8ca4s58isf0hr2x7zp"; depends=[entropy Rcpp]; }; @@ -10725,7 +10757,7 @@ in with self; { hmgm = derive2 { name="hmgm"; version="1.0.3"; sha256="12gaz2pi9ny7y772yzrfvl02p3n89cq1l5dzmcksd172gv9ayyz1"; depends=[binaryLogic glmnet MASS Matrix nat Rcpp rgl]; }; hmi = derive2 { name="hmi"; version="1.0.0"; sha256="0fjcw13mkxza6nkq3fhp188ga1sjspq1sc6wjm4hy13xh7vdjpqq"; depends=[boot broom_mixed coda linLIR lme4 MASS Matrix MCMCglmm mice msm mvtnorm nlme nnet ordinal pbivnorm rlang tmvtnorm]; }; hmlasso = derive2 { name="hmlasso"; version="0.0.1"; sha256="0ydcyz9pw30ji8ghrvkgcbmp27d661vajl97b8cwis52605a3gfx"; depends=[BH MASS Matrix Rcpp RSpectra]; }; - hmm_discnp = derive2 { name="hmm.discnp"; version="3.0-6"; sha256="0jb4ga50d0qy9kz13qjsbwbvyhn8qiqsjsai2m6kvxb7qzd33g26"; depends=[nnet]; }; + hmm_discnp = derive2 { name="hmm.discnp"; version="3.0-7"; sha256="09nr7hmb7iwn8pk6lkcjagkyql53hh68245chx3xxlbvjxy8l471"; depends=[nnet]; }; hmma = derive2 { name="hmma"; version="1.1.0"; sha256="1qsvczqq44h46z0nfblv4rarbg64imz8m0jhxdhva27kbzdvqf97"; depends=[bnlearn graph MCMCpack mhsmm Rgraphviz]; }; hmmm = derive2 { name="hmmm"; version="1.0-4"; sha256="1sbr85lcmcw3lv0ygqwfbarr91dp3br1xnlygy49145cvl93nfci"; depends=[MASS mvtnorm nleqslv quadprog]; }; hmmr = derive2 { name="hmmr"; version="1.0-0"; sha256="1m0jmw0i66hm5z5rycvpdmasq8zhgsz91km491n0n923mm480hmh"; depends=[depmixS4]; }; @@ -10772,7 +10804,7 @@ in with self; { hrqglas = derive2 { name="hrqglas"; version="1.0.1"; sha256="1fmizzs7d42dziih5yaj449k1gw6fxraw72z9h1l2jz6qqgd8938"; depends=[MASS Matrix Rcpp]; }; hrt = derive2 { name="hrt"; version="1.0.1"; sha256="0l0hjspncr6pkc3sg11p63k1gy1jmc70g6581ykh6zy0b07zm8rk"; depends=[CompQuadForm Rcpp RcppEigen]; }; hscovar = derive2 { name="hscovar"; version="0.4.2"; sha256="06bkqcp0vcnkp0jqi0qjvxnw0lk0w4mrf88h1769ak7r49vzlr6f"; depends=[foreach Matrix pwr rlist]; }; - hsdar = derive2 { name="hsdar"; version="1.0.3"; sha256="1slb2m62j86hn1kvpv72fvp48sxl7zb2znrr70jqqbrah8n1ynnl"; depends=[Boruta caret raster rgdal signal]; }; + hsdar = derive2 { name="hsdar"; version="1.0.4"; sha256="1z38qmy8jqzy52qwpbsr4xgdby2c73144bxrn0ywyqdgjz1b6g8j"; depends=[Boruta caret raster rgdal signal]; }; hse = derive2 { name="hse"; version="0.0-28"; sha256="14w09wm1kk7b4q8cl5cwjfqvzm2fb4ls8qjw6i0l54184fmw4dah"; depends=[]; }; hsem = derive2 { name="hsem"; version="1.0"; sha256="0dgp65isbfmw0q4sn36l5226sf6vrl7mvn7gn50xvgybh0l6y7vk"; depends=[boot Matrix mvtnorm numDeriv]; }; hsicCCA = derive2 { name="hsicCCA"; version="1.0"; sha256="1d4lkjrihwhl3jrsj7250ccd90nfwpllyavc3mp15fhcy2jnjci8"; depends=[]; }; @@ -10782,6 +10814,7 @@ in with self; { hsrecombi = derive2 { name="hsrecombi"; version="0.3.4"; sha256="0ca6672px0y5cibv9hk4hc638rp4d3bhbw0qn81irwwk84yacspv"; depends=[curl data_table dplyr hsphase quadprog Rcpp rlist]; }; hsstan = derive2 { name="hsstan"; version="0.8.1"; sha256="0k7sqwx73zid68ji9l2hfihqdlk3rdpid81pp8g3fmi8dpvrzkms"; depends=[BH ggplot2 loo pROC Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; htdp = derive2 { name="htdp"; version="0.1.4"; sha256="0w579qp0p544xryb5r08m1nhqf7rmgv9q0lyx6my4av62l70ka5w"; depends=[Rcpp]; }; + htestClust = derive2 { name="htestClust"; version="0.2.1"; sha256="01gcg2ad1fprn6fwzwjcjpvirz9dvrlns9l8rhf5h9j17p6vb1d1"; depends=[bootstrap MASS]; }; htm2txt = derive2 { name="htm2txt"; version="2.1.1"; sha256="09q026yy8qm1fb3a4bf9vsp4j09kayl7xmk0p58ikar5l3bmfdjv"; depends=[]; }; html2R = derive2 { name="html2R"; version="0.1.0"; sha256="1zdnwbqlpjh8r2xcl83da9pzh9cb8h908krnrs61vqhka7zb82ng"; depends=[glue shiny shinyAce shinyjqui shinythemes]; }; html5 = derive2 { name="html5"; version="0.1.0"; sha256="0ainfi0gb3ylg10j910z61j6qppfl6jh8399ng9wlpv8c7pjzs8l"; depends=[]; }; @@ -10832,7 +10865,7 @@ in with self; { hybridModels = derive2 { name="hybridModels"; version="0.3.7"; sha256="0fj3dvv7s1hlicvlb077pkhbj894brzgdxhp67jck9zpy2qymzxq"; depends=[doParallel doRNG foreach ggplot2 GillespieSSA reshape2 stringr]; }; hybridogram = derive2 { name="hybridogram"; version="0.3.2"; sha256="14p2gwmgcaf84aycdc2a51frw2pccrffsjk8n83gvj2ans8phrr9"; depends=[pheatmap]; }; hydra = derive2 { name="hydra"; version="0.1.0"; sha256="0r3r8cds4h15narawxhzkrvgnf00vlgrgqdgnmbzjyyb1dmry8wn"; depends=[]; }; - hydraulics = derive2 { name="hydraulics"; version="0.4.0"; sha256="0kabxcg7ajl1kgfiy2zr0zsb10wp13742s5nmphgx59wbm67vjz1"; depends=[ggplot2 gtools reshape2 units]; }; + hydraulics = derive2 { name="hydraulics"; version="0.4.1"; sha256="0pqll9k2240jqc59n36iygygcl364jw8nsga81i4vx39x7yfms19"; depends=[ggplot2 gtools reshape2 units]; }; hydroApps = derive2 { name="hydroApps"; version="0.1-1"; sha256="1ycv7l2ywwnx2mgklg6rry7n24jyhi4spvp1xl345yvyn9kf15dz"; depends=[nsRFA]; }; hydroEvents = derive2 { name="hydroEvents"; version="0.10"; sha256="1w7nswdmg52ldzzz4gphqnp5gfgh9pvgyq9w0phpzj5ff19bxbxz"; depends=[]; }; hydroGOF = derive2 { name="hydroGOF"; version="0.4-0"; sha256="0fw8b66k7gdkdjxgmdpp3lk9d8p0wmlvhq2rkcvajjb5wd09f43a"; depends=[hydroTSM xts zoo]; }; @@ -10859,6 +10892,7 @@ in with self; { hypothesestest = derive2 { name="hypothesestest"; version="1.0"; sha256="0g8sm386m1zm9i3900r62x83wb600cy8hqk7dlvbx6wcgrxg82sm"; depends=[]; }; hypothesisr = derive2 { name="hypothesisr"; version="0.1.1"; sha256="0z06risagphhvqiw4lrxy52q6q2yr10w2yxsm8iz1wh9ik097pcv"; depends=[dplyr httr jsonlite]; }; hypr = derive2 { name="hypr"; version="0.2.2"; sha256="1bmg8pz57qxyyicfsyv3s2mk9y914jsids4glsm640kvpy9a59q6"; depends=[cli magrittr MASS pracma]; }; + hypsoLoop = derive2 { name="hypsoLoop"; version="0.2.0"; sha256="0kwxzw2r406li2pmby92a3jik4k3z1vdgs54m4q45a8r8vz3y1nn"; depends=[dplyr ggplot2 PolynomF sf sjPlot stars terra]; }; hystReet = derive2 { name="hystReet"; version="0.0.2"; sha256="01nrbk48r1hf1yc953yf1pzryzrjjckwdqhb3pbnwfza8q0aqsfq"; depends=[httr jsonlite lubridate]; }; hysteresis = derive2 { name="hysteresis"; version="2.7"; sha256="1nnfr50nafhimj2j5xpxly3i8xvkwwddz864gklwm9jzdpmv02yh"; depends=[car MASS msm]; }; hzar = derive2 { name="hzar"; version="0.2-5"; sha256="000l4ki3hvznnhkxc5j422h5ifnsfqalv666j48yby1hsf1lc3kg"; depends=[coda foreach MCMCpack]; }; @@ -10887,7 +10921,7 @@ in with self; { iGasso = derive2 { name="iGasso"; version="1.4"; sha256="17xxqncl5xcphdqclghcazygcgibf8ijdf4kkl3ga11xf70sahj2"; depends=[CompQuadForm lattice]; }; iGraphMatch = derive2 { name="iGraphMatch"; version="2.0.0"; sha256="0xqf04wc5rm7x281pmnpz6a5ax26i9drgy90ixl4bchcx5ma0mr5"; depends=[clue igraph irlba Matrix Rcpp]; }; iIneq = derive2 { name="iIneq"; version="1.0.2"; sha256="15487majkslabw33dgqfx0jmbzzjhiy8z07bki5540d1wf6rmmnn"; depends=[doParallel foreach]; }; - iMRMC = derive2 { name="iMRMC"; version="1.2.3"; sha256="1qga4mm5vslfmxcm3p99nijr4573kq71pfb6yd2ayl6lgjf3y0c3"; depends=[]; }; + iMRMC = derive2 { name="iMRMC"; version="1.2.4"; sha256="1cs5ghrd78h92bmws5z8adawjalvplri9wx2p9w7nq76h31wqhzw"; depends=[]; }; iMediate = derive2 { name="iMediate"; version="0.5.5"; sha256="1lwhrzm4g2fcazh782g7p11v5pyx165ig1dzgkmdmjffpwk0w8b4"; depends=[MBESS mvtnorm plotly]; }; iNEXT = derive2 { name="iNEXT"; version="2.0.20"; sha256="14bagsb0ja3j53i0g4a2ax2gj7lyc6sjcc7isdjx94clbnc2zcsg"; depends=[ggplot2 reshape2]; }; iNZightMR = derive2 { name="iNZightMR"; version="2.2.6"; sha256="1r2lzi9fw46q2k87zfhrfninmvbz15805za60lbfmlv32b29d82y"; depends=[]; }; @@ -10927,7 +10961,6 @@ in with self; { ibr = derive2 { name="ibr"; version="2.0-3"; sha256="1plyz4sl0i8qhk9dh3h7zvh9h8wqr589jvasmvp7r3slp4ndhp1r"; depends=[mgcv]; }; ibs = derive2 { name="ibs"; version="1.4"; sha256="06zyg6c083437nhilqfhcf6yzlvazkpxhi3dh5d3dqv2zhxixlz4"; depends=[Rcpp]; }; ic_infer = derive2 { name="ic.infer"; version="1.1-6"; sha256="14vcwx5592br4zky9mq82akwk8pfiz7p1rx2jvyb48prrs2mm9gy"; depends=[boot kappalab mvtnorm quadprog]; }; - ic50 = derive2 { name="ic50"; version="1.4.2"; sha256="1a5ddmbdfr3ls132fvalbkh4yaawv9k58rgpy54s5qddrm6aas2s"; depends=[]; }; icRSF = derive2 { name="icRSF"; version="1.2"; sha256="1a7046lspk70cvrvzwzhnqcmc3cqa5a9bmzlw012jvcn39m2ca3l"; depends=[icensmis Rcpp]; }; ica = derive2 { name="ica"; version="1.0-2"; sha256="0ya1nph1zwhad0bfz4yxs27kl45yk1dhnphdlrq34p8pqrpmj8g7"; depends=[]; }; ical = derive2 { name="ical"; version="0.1.6"; sha256="1raanaagas1c8w66d8s045z5ip1i97xca4233d55jk6cazv0mb1w"; depends=[V8]; }; @@ -10945,11 +10978,16 @@ in with self; { icensBKL = derive2 { name="icensBKL"; version="1.2"; sha256="1zzv80jnn8ilnc1gv4nj24l2fl8805rjhqjgkb0xx4y9zhpg1jkp"; depends=[gtools Icens MASS mvtnorm smoothSurv survival TeachingDemos]; }; icensmis = derive2 { name="icensmis"; version="1.5.0"; sha256="1afpn07a25j2jh89r78bvarg2kr0sk3ap8gdmvk75lc6g3dhvri9"; depends=[Rcpp]; }; icertool = derive2 { name="icertool"; version="0.0.3"; sha256="0wwkqcvjmv2z8a8j597c2fjjcka1jz932i94rmqxcy31brvbi2nl"; depends=[digest DT ggplot2 ggrepel purrr readxl shiny shinyhelper shinythemes tidyverse]; }; - icesAdvice = derive2 { name="icesAdvice"; version="2.0-0"; sha256="0sx93fsx2srmynnvs3bjb525m9a5w70qr9lghmkqa07crd991vfr"; depends=[]; }; - icesDatras = derive2 { name="icesDatras"; version="1.3-0"; sha256="0yaqlximxa3rcjxgrd0mii02mm9gpcxgw3i8pymp00bk8zixvj30"; depends=[]; }; + icesAdvice = derive2 { name="icesAdvice"; version="2.1.1"; sha256="1i47kz45m45nn23j0ydq8vahw97py2im80yxadlqbvldjcm98vdw"; depends=[]; }; + icesConnect = derive2 { name="icesConnect"; version="1.0.0"; sha256="067jh43vp79pcw8bs1iarrd680x0ajc25vp91ckpjpzm22311wbr"; depends=[base64enc getPass httr jsonlite keyring whoami]; }; + icesDatras = derive2 { name="icesDatras"; version="1.4.0"; sha256="00vfd589y617lbjadmajjdq9c9d9w2c81pxqfzlsh50rz9y7qjsk"; depends=[]; }; + icesDatsu = derive2 { name="icesDatsu"; version="1.1.0"; sha256="0vprh8y6x28q33b6zx9qhq991q0aqn5rhccf44k8211n5dwa555k"; depends=[httr icesConnect jsonlite]; }; + icesDatsuQC = derive2 { name="icesDatsuQC"; version="1.0.0"; sha256="18c48qvls9ngf6mszx5wdkm1xxijc9i005kfa5zkww6bj0ran80g"; depends=[icesDatsu sqldf]; }; + icesSAG = derive2 { name="icesSAG"; version="1.4.0"; sha256="0y6sajhl8bj2yzyrdnmlaq2kfnf3jzz99s66gg1gjpdhksn77dba"; depends=[httr icesVocab openssl png xml2]; }; + icesSD = derive2 { name="icesSD"; version="2.0.0"; sha256="1k0i79hh63bmsqw5m6ym2h3dydrjji57lkysp5n9x293lgh04pf2"; depends=[httr icesConnect]; }; icesTAF = derive2 { name="icesTAF"; version="3.6.0"; sha256="1g2qlpbi94731vvzdnc16f1gpgn49sxzlsljzzapfgk14dcm96b1"; depends=[glue jsonlite lattice purrr roxygen2]; }; - icesVocab = derive2 { name="icesVocab"; version="1.1.9"; sha256="14zbc31xb7lizz1ki85nxb6lzmwjdyfajv0j43hmbbh3yscjd9p3"; depends=[xml2]; }; - ichimoku = derive2 { name="ichimoku"; version="1.2.5"; sha256="0d4pcfq153csaxabs0z09gcjv08nmp2ry3nf79lsrlmzc51sl6nm"; depends=[cpp11 curl ggplot2 gtable jsonlite tibble xts zoo]; }; + icesVocab = derive2 { name="icesVocab"; version="1.2.0"; sha256="0cd2w0w2m176mpfd3lzvxl88bcli1qrkjrli539i764nlyh0ipl0"; depends=[xml2]; }; + ichimoku = derive2 { name="ichimoku"; version="1.3.0"; sha256="1h4h0ms88sh841gcwb1sgwhg9j4qvikajfzflylr0xbrlly9rhp6"; depends=[curl ggplot2 jsonlite tibble xts zoo]; }; icmm = derive2 { name="icmm"; version="1.2"; sha256="179q8w60g4yrv6wqgfmg47by1zc1mbhsdjgl7jq4wirqvwnxvgym"; depends=[EbayesThresh]; }; iconr = derive2 { name="iconr"; version="0.1.0"; sha256="17q7zj92yrj49slmrpwkxkjd0imrl9ildms9zj8qx7yc7dcv4c1s"; depends=[igraph magick rgdal]; }; icosa = derive2 { name="icosa"; version="0.10.1"; sha256="025bqlgx4p1kxpmizfzgiamcq2f5nj5m2ky25fpgdm714sybvwvi"; depends=[igraph Rcpp sp]; }; @@ -10957,14 +10995,13 @@ in with self; { icr = derive2 { name="icr"; version="0.6.2"; sha256="1xqvzn02x13d706irv83zycpxhm8yq1c34rh1nphddy5gri7gwjb"; depends=[Rcpp]; }; icrf = derive2 { name="icrf"; version="2.0.0"; sha256="0kx687q0fv5agjwfsqx12wbayrzr02x316gg3y0rklqyq5aapvfv"; depends=[]; }; icsw = derive2 { name="icsw"; version="1.0.0"; sha256="0g7bcqs0rpbs1p202i9wjbl8hhy3r196zambm044xyf7kvsbzzf6"; depends=[]; }; - idar = derive2 { name="idar"; version="1.2"; sha256="0bsh0dx44fi2ggf33xin94fh2yjkr0bbib68cy7k5c9z363zwhfc"; depends=[ape FD picante spatstat spatstat_core spatstat_geom]; }; + idar = derive2 { name="idar"; version="1.3"; sha256="16n2vpc6zx8sz2pr8nmza7127s3vwinjrrmmxc63q8cmb1ifi3gv"; depends=[ape FD picante spatstat spatstat_core spatstat_geom spatstat_random]; }; idbg = derive2 { name="idbg"; version="1.0"; sha256="1rxmj04hswxybrg7dfib3mjy8v8mdiv13zwbscp2q55z55hhf1m5"; depends=[]; }; idbr = derive2 { name="idbr"; version="1.0"; sha256="0silsd3ydrrg924klga8dascxjfmi2czw7sz3ap2j7gkgvxcfcpv"; depends=[countrycode dplyr httr jsonlite purrr rnaturalearthdata sf]; }; ideamdb = derive2 { name="ideamdb"; version="0.0.9"; sha256="1f4dcv6c8ny7pik547f4840vhll26mzfcijnfsiqx31xhn0gsizd"; depends=[dplyr ggplot2 stringr tidyr]; }; idefix = derive2 { name="idefix"; version="1.0.1"; sha256="1hqq9w0hssczmy8kvpp438fz0r5wdrxzxpkhrljz50rqazr61asy"; depends=[dplyr MASS mlogit Rcpp RcppArmadillo Rdpack scales shiny tmvtnorm]; }; idem = derive2 { name="idem"; version="5.1"; sha256="1i5h0hg76rrxharlfv33kcbwmvkfyfk92wim93dvpkflnbwsmzfl"; depends=[BH mice Rcpp RcppEigen rstan sqldf StanHeaders survival]; }; idendr0 = derive2 { name="idendr0"; version="1.5.3"; sha256="11c12d166bp2i498d8y6ipg5jhz1xsdsrmnhjqnrqqzp9avvrsjp"; depends=[tkrplot]; }; - identity = derive2 { name="identity"; version="0.2-1"; sha256="1j5wb5cj5j49in2g6r1shdm4ri4cfzj22hpqazvcmq4dm291sdi9"; depends=[]; }; ider = derive2 { name="ider"; version="0.1.0"; sha256="021s4fybki7a6mdsr6gkjrzfhaqdcg0m2a6r24y91jklxlxqxmws"; depends=[FNN]; }; idiogramFISH = derive2 { name="idiogramFISH"; version="2.0.8"; sha256="1m45858da25zwrm74h69a2a5ly4yy0cl12vkkaqrwzn72snsq3c2"; depends=[crayon dplyr plyr rlang tidyr]; }; idm = derive2 { name="idm"; version="1.8.2"; sha256="04f0i0kwdxywmj2i184knx5a5v9svx0lbam6wpz49hghg7qpy0w5"; depends=[animation ca corpcor dummies ggplot2 ggrepel]; }; @@ -10979,11 +11016,11 @@ in with self; { iemisc = derive2 { name="iemisc"; version="0.9.9"; sha256="1hay4d85xw81cgzkm21db8mssqqb8cw4bsg3qypm59bqwmqpl8md"; depends=[CHNOSZ data_table fpCompare gsubfn iemiscdata pracma r_import rgdal sp stringi testit units zoo]; }; iemiscdata = derive2 { name="iemiscdata"; version="0.6.1"; sha256="0a9x90kisgmrka0frk9myb1qdq3nl092n78wrif31b42arifa8h9"; depends=[]; }; iemisctext = derive2 { name="iemisctext"; version="0.9.99"; sha256="02rr7sjjbrvfxwjl87f2ki245a8cw5fvx7z2z4rl8ixxlyxj9p5v"; depends=[]; }; + ifCNVR = derive2 { name="ifCNVR"; version="0.1.0"; sha256="0qcmgd3vi413n4ipa6ybkr7a1kwxyr2al8cw4gfr8fp2av1sk4vc"; depends=[data_table isotree rmarkdown]; }; ifa = derive2 { name="ifa"; version="7.0"; sha256="1cxafd7iwvyidzy27lyk1b9m27vk785ipj9ydkyx9z1v0zna2wnl"; depends=[mvtnorm]; }; ifaTools = derive2 { name="ifaTools"; version="0.23"; sha256="16xf3165gkmh3f9843m0n4wqdwwdfs6rjh64qcpz8srsm2z5y3l2"; depends=[ggplot2 OpenMx reshape2 rpf shiny]; }; ifctools = derive2 { name="ifctools"; version="0.3.4"; sha256="1cxxk1ysb5ya81g669xyalzmkpfjsjsrrqmvnsg1z0kwh5yv54ds"; depends=[]; }; ifs = derive2 { name="ifs"; version="0.1.5"; sha256="03g9cgs0zp89b1d7rpcn5clkvmg0spnariwrifd8hha476ldvfcy"; depends=[]; }; - ifultools = derive2 { name="ifultools"; version="2.0-23"; sha256="16a7rbvlym3bnfm93ikr5kl0l86ppk0s41fva6idvcx765g3fqkk"; depends=[MASS splus2R]; }; ig_vancouver_2014_topcolour = derive2 { name="ig.vancouver.2014.topcolour"; version="0.1.2.0"; sha256="0yclvm6xppf4w1qf25nf82hg1pliah68z7h3f683svv0j62q748h"; depends=[]; }; igate = derive2 { name="igate"; version="0.3.3"; sha256="0b8dk976z0764cmxwcq6w2f3akv7iivivharinq029p90b600qza"; depends=[dplyr ggplot2 kableExtra knitr rmarkdown stringr xtable]; }; igcop = derive2 { name="igcop"; version="1.0.1"; sha256="0jl107mdwbldi319qflqjzy8vk02sr4nihky8jl5kcgr6x55qh6z"; depends=[Rcpp rlang vctrs]; }; @@ -11011,10 +11048,11 @@ in with self; { image_dlib = derive2 { name="image.dlib"; version="0.1.0"; sha256="118zwalpxcnn2fgjv8xsp763yvbqcyv81p6fblxizlnimyrjva71"; depends=[Rcpp]; }; image_libfacedetection = derive2 { name="image.libfacedetection"; version="0.1"; sha256="0mr7zrqd73mhvs918615lwsf2bgg63x3wh16wdpwhb2zd7ybm87a"; depends=[Rcpp]; }; image_textlinedetector = derive2 { name="image.textlinedetector"; version="0.1.5"; sha256="1bbakqz7zrsdyzxgvv6czh8cgwj0qbazhfpacbm04pbpji5iilxw"; depends=[magick Rcpp]; }; + image2data = derive2 { name="image2data"; version="1.0.0"; sha256="0jyicd6i15lb7d5vp1d7r2b2nsind1glylscix86lpkv6pcdz1as"; depends=[readbitmap]; }; imageData = derive2 { name="imageData"; version="0.1-61"; sha256="0bavyd8njfjd0l8dcsm6gklgc81kykl275w2gpvb5cxrhb9yp32n"; depends=[dae GGally ggplot2 Hmisc RColorBrewer readxl reshape]; }; imagefluency = derive2 { name="imagefluency"; version="0.2.3"; sha256="0f4kizxc86q6pgx5dbp14y6866b1ldyf7zgpfikd2iqhvxbs7qwa"; depends=[magick OpenImageR pracma R_utils readbitmap]; }; imagefx = derive2 { name="imagefx"; version="0.4.1"; sha256="1mxd33y8zbq8kig6m6xihb5w8wrjppgmpyjspvaxjwk7si9a09k1"; depends=[moments signal]; }; - imager = derive2 { name="imager"; version="0.42.11"; sha256="1a1jhmgrpv1d0fk14axj88qvxgb25bqnj65d60g1k985ipzvgy27"; depends=[downloader igraph jpeg magrittr png purrr Rcpp readbitmap stringr]; }; + imager = derive2 { name="imager"; version="0.42.13"; sha256="0zygnmxwbbmj5i2l2affzdz90xvsa7b5pbkzkhjbm40is69rh2nr"; depends=[downloader igraph jpeg magrittr png purrr Rcpp readbitmap stringr]; }; imagerExtra = derive2 { name="imagerExtra"; version="1.3.2"; sha256="1f6mxfn7am4ph9acbbx53r4bk4vsm73p7arh8rvrsic9pgma3gqf"; depends=[fftwtools imager magrittr Rcpp]; }; imageseg = derive2 { name="imageseg"; version="0.4.0"; sha256="1i3bwhc4251ah2vq3s7jy941qdxy8jjrs3ay8297nd2b4v18y8as"; depends=[doParallel dplyr foreach keras magick magrittr purrr tibble]; }; imageviewer = derive2 { name="imageviewer"; version="0.1.0"; sha256="1rsrwy5v0gnsmbay1zqijhvll2l1bs844m52w65588j9nlx4fci9"; depends=[htmlwidgets]; }; @@ -11038,7 +11076,7 @@ in with self; { impactflu = derive2 { name="impactflu"; version="0.1.0"; sha256="0wpaq2q61g6hl9fffs5cjbzdz1qc8dxsbknfs0iarwkn08460bn5"; depends=[dplyr glue lubridate magrittr Rcpp rlang tibble]; }; impactr = derive2 { name="impactr"; version="0.4.0"; sha256="0nywix00j2j4gql83w81c7kyhlvfzydvjgzd1495xsiyy0a8c4jn"; depends=[glue lubridate lvmisc pillar pracma purrr Rcpp rlang signal stringr tibble toOrdinal vroom]; }; impimp = derive2 { name="impimp"; version="0.3.1"; sha256="0xkxph4f1rcpkryx9v339bfbsnq3xwdj1flb4j2dgh99apj126sq"; depends=[]; }; - implicitMeasures = derive2 { name="implicitMeasures"; version="0.2.0"; sha256="0w0dwnzfhw5v5j7q3zpfsca4ydmq7b9fzspvyf9sibyh587isb9c"; depends=[ggplot2 stringr tidyr xtable]; }; + implicitMeasures = derive2 { name="implicitMeasures"; version="0.2.1"; sha256="177d69fbyzrg28ddxqlqbf7hm25mj5rpmpslh0mad2xqzyvdylvn"; depends=[ggplot2 stringr tidyr xtable]; }; implied = derive2 { name="implied"; version="0.4.0"; sha256="00wv05pb59p86ddfwha7ilfss36si8yljnmkmayiqcazn32ylzg8"; depends=[]; }; implyr = derive2 { name="implyr"; version="0.4.0"; sha256="0rblsmx1z2n4g3fims5wa3wyf5znr0gkwd2yfz3130bcm6346da0"; depends=[assertthat DBI dbplyr dplyr rlang tidyselect]; }; r_import = derive2 { name="import"; version="1.2.0"; sha256="018s0x224gqnv4cjfh0fwliyfg6ma9vslmwybrlizfsmqcc5wp37"; depends=[]; }; @@ -11047,18 +11085,18 @@ in with self; { impressionist_colors = derive2 { name="impressionist.colors"; version="1.0"; sha256="03z5w7y7vbvlnn30r9y3ip93h364f87nhwdb9hcki26csiq2bnlv"; depends=[]; }; imptree = derive2 { name="imptree"; version="0.5.1"; sha256="0f087000092ydnpj3ch4mbip8wp32scn8xw4vlkq5lf6130gfs1b"; depends=[Rcpp]; }; imputeFin = derive2 { name="imputeFin"; version="0.1.2"; sha256="11qd43zs8gd3fg3f47lrb6b4r0w7kxczain61bxc67ppzflrafmd"; depends=[magrittr MASS mvtnorm zoo]; }; + imputeGeneric = derive2 { name="imputeGeneric"; version="0.1.0"; sha256="16680bkx1p5w0l5jh6g8f0qbcv0alw9xr2gkbhfs0rpbv5canl7f"; depends=[gower parsnip]; }; imputeLCMD = derive2 { name="imputeLCMD"; version="2.0"; sha256="10v3iv1iw6mnss6ry836crq9zdgid2y1h3pvigzjsrmnp5n89mfz"; depends=[impute norm pcaMethods tmvtnorm]; }; imputeMDR = derive2 { name="imputeMDR"; version="1.1.2"; sha256="0ds5a4wav9vb9z5nji8hv5l76310rd970xf702fd0ckx1sh6rgd7"; depends=[]; }; imputeMissings = derive2 { name="imputeMissings"; version="0.0.3"; sha256="1dfhi235j1qz2mv89j92b903j5mdwlzisiyvvi9mmiacdj5ln89z"; depends=[randomForest]; }; imputeMulti = derive2 { name="imputeMulti"; version="0.8.3"; sha256="0vk5fz6cr14czr2ycvvc1xh2cdf0k7sw0jbbjaf7dp8i4hr1j1vn"; depends=[data_table gtools Rcpp]; }; - imputePSF = derive2 { name="imputePSF"; version="0.1.0"; sha256="0xfd2mybg0cbi3n35j28s4xq4iwr5rq4mqwgdqml7l2rlzidcwc8"; depends=[PSF]; }; imputeR = derive2 { name="imputeR"; version="2.2"; sha256="0jfyl6k285x4lc58q13fhi004l4yaqas0d4g08rx78ml7p6l1r48"; depends=[reshape2]; }; imputeTS = derive2 { name="imputeTS"; version="3.2"; sha256="19kzwa4xih7y1rilgqa945d35agma9qfnj9fraancy49b06axrx9"; depends=[forecast ggplot2 ggtext magrittr Rcpp stinepack]; }; imputeTestbench = derive2 { name="imputeTestbench"; version="3.0.3"; sha256="0yc1l3r7g7x2pgyli6j08ikvsbvr24kijnn7pdj54blw7c0pdmm2"; depends=[dplyr forecast ggplot2 imputeTS reshape2 tidyr zoo]; }; imputeYn = derive2 { name="imputeYn"; version="1.3"; sha256="1b21w1aa5f7yiq8k0wa86wvbg4ij7f6ldwn6asfqwb0b90rvsgvs"; depends=[boot emplik mvtnorm quadprog survival]; }; imsig = derive2 { name="imsig"; version="1.1.3"; sha256="175is0b39grc609dskv9274czv4iwnmlg81dl4nr01xdp6f7g487"; depends=[ggplot2 gridExtra HiClimR igraph RColorBrewer survival]; }; in2extRemes = derive2 { name="in2extRemes"; version="1.0-3"; sha256="1lgsqm29zmjyf8kynyra2p3q7bs4fyd7ac4v6s3pbahzhhzdk94y"; depends=[extRemes]; }; - inTextSummaryTable = derive2 { name="inTextSummaryTable"; version="3.1.0"; sha256="0a7r6k1fkky0x13z2shy6smkh0nl7pm8kkyk001f4s8g008v2bc2"; depends=[clinUtils cowplot flextable ggplot2 ggrepel magrittr officer plyr reshape2 scales]; }; + inTextSummaryTable = derive2 { name="inTextSummaryTable"; version="3.1.1"; sha256="0js287j0bz7plc9xaclksvss2xj43g735xczvxsfnydrma2wvhzi"; depends=[clinUtils cowplot flextable ggplot2 ggrepel magrittr officer plyr reshape2 scales]; }; inaparc = derive2 { name="inaparc"; version="1.1.0"; sha256="0ni34bkl7v1ypci8j8qhkfbf7gnx77wi4v9w1ww18z2jizsrk5h3"; depends=[kpeaks lhs]; }; inbreedR = derive2 { name="inbreedR"; version="0.3.3"; sha256="0g7h4jgmnbpm4c6pb6fkmpzdg4adkc0k72444jpxbvyddq3hqh24"; depends=[data_table]; }; incR = derive2 { name="incR"; version="1.1.0"; sha256="0q41bs7pf6hqyfwvcwc2sxq44jq95qq3qsddz53f8gphwjsyf1v7"; depends=[dplyr ggplot2 lubridate maptools rgeos]; }; @@ -11072,16 +11110,15 @@ in with self; { indelmiss = derive2 { name="indelmiss"; version="1.0.9"; sha256="0i4qnvc0xb3ngnk8xdscmx7qnicfs7s6czawf6schb1nh2pjpzyq"; depends=[ape numDeriv phangorn Rcpp]; }; independence = derive2 { name="independence"; version="1.0.1"; sha256="0yln5wd8m5fgh4h7k80vq22byf06k4d6574zxyqcig63hls7v568"; depends=[Rcpp]; }; index0 = derive2 { name="index0"; version="0.0.1"; sha256="1kdjc86312a9x800h0i7z0z7bwbxyrqds8wnrm15aljkvk83xwxl"; depends=[]; }; - indicspecies = derive2 { name="indicspecies"; version="1.7.9"; sha256="1xza0ha42frz5wizf268j49y3201vpsm4kgj0czsw9wygzjl008f"; depends=[permute]; }; + indicspecies = derive2 { name="indicspecies"; version="1.7.12"; sha256="0ihlbbqygjpp6ynpk047f6n041fghhcyy9xkkgvrciqqvnif17vq"; depends=[permute]; }; indiedown = derive2 { name="indiedown"; version="0.1.1"; sha256="0r46r6s0asd182gs5map4wilhfb7jhgrcinnl36ib3q1xxn06457"; depends=[cli fs gfonts rlang withr]; }; - indirect = derive2 { name="indirect"; version="0.2.0"; sha256="1k7xwsx655nzl43s1mkaysyn5gydq973gynmqip67lssnm7cnch4"; depends=[gplots MASS]; }; + indirect = derive2 { name="indirect"; version="0.2.1"; sha256="1iaks18xcxqr2afzbzgxj4jr77p6gw2zmgb1398cgqkgdwb1yj13"; depends=[gplots MASS]; }; individual = derive2 { name="individual"; version="0.1.7"; sha256="0by56qwxdgrb8f1x8d1yv5alf22m375a6gjcr3i31hvzn53ncc6w"; depends=[R6 Rcpp testthat]; }; industRial = derive2 { name="industRial"; version="0.1.0"; sha256="0zgnykbr71pi3nii178ijmzd8ijwf3g8y8yz6g3jy4c0by7w676s"; depends=[dplyr ggplot2 lattice magrittr rlang SixSigma tidyr]; }; inegiR = derive2 { name="inegiR"; version="3.0.0"; sha256="1rhkdmpz7mxi7ddyygss5rlh3c8hgxhzdk3fnvnlizc1l55cc6c0"; depends=[jsonlite lubridate plyr tibbletime XML zoo]; }; ineq = derive2 { name="ineq"; version="0.2-13"; sha256="09fsxyrh0j7mwmb5hkhmrzgcy7kf85jxkh7zlwpgqgcsyl1n91z0"; depends=[]; }; ineqJD = derive2 { name="ineqJD"; version="1.0"; sha256="0anv384jwzn5gkc0jqsl81bkmrjd21br99c5q30xd6ncxavj4s57"; depends=[]; }; infer = derive2 { name="infer"; version="1.0.0"; sha256="1qbpcn7jqbvgwnpiyylj021j8m33p58a204yd1pfkpzd3x2lbsm6"; depends=[broom dplyr generics ggplot2 glue magrittr patchwork purrr rlang tibble tidyr]; }; - inference = derive2 { name="inference"; version="0.1.0"; sha256="0j92isfkbhk13yx2hd3a5dd7ikcbgjc04zisd1n5kmg6ajw2aj6r"; depends=[sandwich]; }; inferference = derive2 { name="inferference"; version="1.0.2"; sha256="171h9zhvaza7fklcg07wk9sm8k2fy39k3cdjkzb3vk8p8acd051v"; depends=[Formula lme4 numDeriv]; }; inferr = derive2 { name="inferr"; version="0.3.1"; sha256="1ma90f31jcd65l5v3wqbx4x61gw3iay1a2hwjsd5aln1ivbgmzsv"; depends=[data_table magrittr Rcpp]; }; infinitefactor = derive2 { name="infinitefactor"; version="1.0"; sha256="0j6f9q8z81znwakyx4h0l8ypz0y4yv11d7l3rwljmn4rgspyjl5c"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; }; @@ -11118,7 +11155,7 @@ in with self; { insect = derive2 { name="insect"; version="1.4.2"; sha256="0pbac9il1jrhii0hxvvqjc3phyr2iamxwzanxx5mrkyjh2wsl3jh"; depends=[ape aphid kmer openssl phylogram RANN seqinr xml2]; }; insee = derive2 { name="insee"; version="1.1.3"; sha256="103b9aw6afq169k839lydfc904wqrwh1bh2r69wa2s61rpwiinwc"; depends=[crayon dplyr httr openssl purrr rappdirs readsdmx rlang stringr tibble tidyselect xml2]; }; insiderTrades = derive2 { name="insiderTrades"; version="0.0.1"; sha256="1hz2jmghfihbn1dbrr38zlwa0s44gm84pjhhk0yfrnljg9mqf4qy"; depends=[magrittr RCurl stringr]; }; - insight = derive2 { name="insight"; version="0.15.0"; sha256="1vizx515a24v5x4f5mzbigl0wl4gz75hp5gqw8lkijygw71li8fn"; depends=[]; }; + insight = derive2 { name="insight"; version="0.16.0"; sha256="0gcyps0889rys04bj70br5zfvzcqxd55yawykmns17n9hsixfi3r"; depends=[]; }; insol = derive2 { name="insol"; version="1.2.2"; sha256="166kgxgzbh55y2qqya6c2si22x0v7asi70im054g6xxwc5187kh3"; depends=[raster]; }; inspectdf = derive2 { name="inspectdf"; version="0.0.11"; sha256="19ainhxgda58cb70gwxki618wln1v1k4iwvnlvy6s7aldry4wgc4"; depends=[dplyr ggfittext ggplot2 magrittr progress Rcpp tibble tidyr]; }; inspector = derive2 { name="inspector"; version="1.0.3"; sha256="16gc98af6wmwf32fz8zml5v17g5lkiybzyzsqgphx0k19hrbc6kr"; depends=[Rdpack]; }; @@ -11141,6 +11178,7 @@ in with self; { intensity_analysis = derive2 { name="intensity.analysis"; version="0.1.6"; sha256="1ydmn7njqk6i2667zaha8mvfndss4im39czadg1f3z6sndp2lsji"; depends=[diffeR ggplot2 raster reshape2 rgdal]; }; intensitynet = derive2 { name="intensitynet"; version="1.0.0"; sha256="1mwgz8rp180x7n08clqr0g19f0kxnparv10k98ysxq7shpwqimr1"; depends=[ggplot2 igraph intergraph Matrix sna spatstat_geom spdep viridis]; }; interactionR = derive2 { name="interactionR"; version="0.1.3"; sha256="1wckp3vz06ary2ydk22iykp1ck3i0bqhq51d8jyafq2h0rjhkyc8"; depends=[car flextable msm officer]; }; + interactionRCS = derive2 { name="interactionRCS"; version="0.1.0"; sha256="07yhcgp9jc0fd29drsvdcpg8hw3zafr3njkx4qa5qhp3jsn0m3pm"; depends=[boot mlbench msm pryr pspline rms survival]; }; interactionTest = derive2 { name="interactionTest"; version="1.2"; sha256="0ycr839l07xahakr4r2jvlmd0fcxfm4qi3g8agnyh24c2kwl3ck2"; depends=[]; }; interactions = derive2 { name="interactions"; version="1.1.5"; sha256="16lrlj0rc9bkxgmackpvcx8wx9pbsnr55vak6zx022ss820h3ljj"; depends=[cli crayon generics ggplot2 jtools rlang tibble]; }; interep = derive2 { name="interep"; version="0.3.2"; sha256="1a4ws8wsrlkiq8dxrx85cq758dim3ym0sirag1k7hhv6pl825cxs"; depends=[MASS Rcpp RcppArmadillo]; }; @@ -11162,7 +11200,7 @@ in with self; { intervals = derive2 { name="intervals"; version="0.15.2"; sha256="0mvwfwc03ifb30a3dzbmkv9adwqb8ajxhcw24d8xip8px063plhb"; depends=[]; }; intervcomp = derive2 { name="intervcomp"; version="0.1.2"; sha256="1l6x1fl84li6is3b92b96q3fbv0rpgqy2lvw9cbi2cq8nh9imnyx"; depends=[]; }; interventionalDBN = derive2 { name="interventionalDBN"; version="1.2.2"; sha256="0wpp4bfi22ncvl0vdivniwwvcqgnpifpgxb4g5jbyvr0z735cd9w"; depends=[]; }; - inti = derive2 { name="inti"; version="0.5.2"; sha256="1h0xkp9lqqqly5ldjz6ycja9b1q62ydysihjz2w7ajvrkjxhagbs"; depends=[agricolae dplyr DT emmeans FactoMineR ggplot2 lme4 purrr shiny stringi stringr tibble tidyr]; }; + inti = derive2 { name="inti"; version="0.5.4"; sha256="1y6hpxhish3byrd3jlsinhwwfvz4mpcmhbhzxc2fjwyc4a3h36kh"; depends=[agricolae dplyr DT emmeans FactoMineR ggplot2 lme4 purrr shiny stringi stringr tibble tidyr]; }; intkrige = derive2 { name="intkrige"; version="1.0.1"; sha256="1p3fn5nzn1iliy025187k590qrsw3z3d47p67gzwwd6h050yrl86"; depends=[gstat raster Rcpp RcppArmadillo Rdpack sp]; }; intmed = derive2 { name="intmed"; version="0.1.2"; sha256="0amcqzinj35yvb9nfy808bz098dqmnds13z335lgqm6sykriyjpl"; depends=[doParallel dplyr foreach MASS mice stringr tibble]; }; intrinsicDimension = derive2 { name="intrinsicDimension"; version="1.2.0"; sha256="0cka20ifxx9njnvp18bzhrvmh3cwjnxkc0a23qzi43dahc51ijbc"; depends=[yaImpute]; }; @@ -11179,6 +11217,7 @@ in with self; { invctr = derive2 { name="invctr"; version="0.1.0"; sha256="0jrbr53kvwrf800z18vz9df9bk7swpd4avnyf59ggz2bc0z2ijwk"; depends=[plyr rlang]; }; inventorize = derive2 { name="inventorize"; version="1.0.6"; sha256="01rwqqljmlk5bwnvlx0qy6n67q2swjcxp90fp2wipyvl1f46h3m1"; depends=[dplyr ggplot2 magrittr plotly plyr tidyr]; }; inverseRegex = derive2 { name="inverseRegex"; version="0.1.0"; sha256="1wk3ac2rfy0m8442sa2m75s6l3wadx4d4cwas6c8n2xqkrphci87"; depends=[]; }; + invertiforms = derive2 { name="invertiforms"; version="0.1.0"; sha256="131h5dlyj38bis2rk2ji3dpdd45iiavfwb4d6cf0gn8rr7ldkwgl"; depends=[glue Matrix sparseLRMatrix]; }; investr = derive2 { name="investr"; version="1.4.0"; sha256="0l47bfwxssfr3maprkpwnmgxnxccl3ch4grc7f968iiqk83mcxw9"; depends=[nlme]; }; invgamma = derive2 { name="invgamma"; version="1.1"; sha256="12ga2y4wc9bc5zz6vimvxwgjpsx3ys3209nq63gscbw559ydxa5a"; depends=[]; }; io = derive2 { name="io"; version="0.3.2"; sha256="1cyl8wvbngdrdkkckng1bs699rjp737j99kbd8r155fjj0370nx4"; depends=[filenamer stringr]; }; @@ -11188,7 +11227,7 @@ in with self; { ionr = derive2 { name="ionr"; version="0.3.0"; sha256="18rv5n5gihb6pz36s45yj17sdjsbj4485k4lnggdjj1gbbjkz2ni"; depends=[gplots psych]; }; iopsych = derive2 { name="iopsych"; version="0.90.1"; sha256="0adxwxnb1zdlld3icdggx7cq6cp8z4h1jf105485w322a8c6s9ik"; depends=[mco mvtnorm]; }; iosmooth = derive2 { name="iosmooth"; version="0.94"; sha256="06xgzhjgb6pznjzfli193q7kn8sh5jmqsssgymwj98bw7iwn4q3z"; depends=[]; }; - iotables = derive2 { name="iotables"; version="0.4.7"; sha256="0v8ixajmdxi1rczdxvl8kzqmj3yg2ihblg5x1bx044lp489mk4mw"; depends=[assertthat dplyr eurostat forcats glue kableExtra knitr lubridate magrittr plyr readxl rlang tibble tidyr]; }; + iotables = derive2 { name="iotables"; version="0.9"; sha256="0kjy6lh9s8x7fdm9pnp52zj2rgrkm89fjwfdhffmah4n3ra13664"; depends=[assertthat dplyr eurostat forcats glue kableExtra knitr lubridate magrittr plyr readxl rlang tibble tidyr tidyselect]; }; iotools = derive2 { name="iotools"; version="0.3-2"; sha256="07q0z0kszm1xx5hfhisfliyrcsxd8dc5mx0a2bwwnv5l1xzmix17"; depends=[]; }; ip2location = derive2 { name="ip2location"; version="8.0.1"; sha256="0mf6ncckjjrq4dvd8pifz4izn4vqmsqq0pw36gm1zqzbyyvmqqya"; depends=[jsonlite reticulate stringr]; }; ip2proxy = derive2 { name="ip2proxy"; version="1.1.0"; sha256="1hs7n33cn2drqig0p2ns0bnyx2af58x2rslih3yj85xx0dn87qgp"; depends=[jsonlite reticulate stringr]; }; @@ -11206,7 +11245,6 @@ in with self; { ipkg = derive2 { name="ipkg"; version="1.0.4"; sha256="12ddzqfdvz98568kwzrhlxv5j51g2qmxi2jyyvfm39rxncvsgrx1"; depends=[remotes]; }; iplots = derive2 { name="iplots"; version="1.1-7.1"; sha256="1bz8n9cnx6zy3wsr49h55r0l5ikfl0xjg4r76fi4giid2a3ba4lf"; depends=[png rJava]; }; ipmr = derive2 { name="ipmr"; version="0.0.4"; sha256="1j1dkfgglsx80872ck2hfd2bl4f2hzhfmlnlvyw6vdj2cnh728jv"; depends=[magrittr purrr Rcpp rlang]; }; - ipptoolbox = derive2 { name="ipptoolbox"; version="1.2"; sha256="0scbny4crgr23qcp0vgsxhwmj5g5q5c1c4mb5mmb5njyvc34s01l"; depends=[AlgDesign copula evd kolmim triangle]; }; ipr = derive2 { name="ipr"; version="0.1.0"; sha256="1db06r784c6jga0anp6p5b3k47yfhr84nzxyjn52pc9zkg3yifjm"; depends=[]; }; ipred = derive2 { name="ipred"; version="0.9-12"; sha256="0hsq00382pfd9hzpcgphjxazbxm4zx0k2r6pk6kib56k0ibm7qfn"; depends=[class MASS nnet prodlim rpart survival]; }; iprior = derive2 { name="iprior"; version="0.7.3"; sha256="15qzqwikxy85fcd7psz363b5wb0kpi85icfyb47hbgdhln8fi2qb"; depends=[doSNOW foreach ggplot2 mvtnorm Rcpp RcppEigen reshape2 scales]; }; @@ -11218,6 +11256,7 @@ in with self; { ipwErrorY = derive2 { name="ipwErrorY"; version="2.1"; sha256="14p22mwc120kdlf6r1hfx4kp7nqrz2nl2vpvy45j8rbrc571b6ka"; depends=[nleqslv]; }; iqLearn = derive2 { name="iqLearn"; version="1.5"; sha256="1zn43zvx0mjzh96bm73scacmladamy8jmhxim7hcfq39cfhiw3c8"; depends=[]; }; irace = derive2 { name="irace"; version="3.4.1"; sha256="1dhlspv1gqg7cm7j95zhl0k2zr0s159krjmxm07k5fp68ax95sky"; depends=[R6]; }; + irboost = derive2 { name="irboost"; version="0.1-1.1"; sha256="03rgcmaahq1mhv15lid41n39wiqn4lrnc4q0rq25q7xg328vc9d5"; depends=[mpath xgboost]; }; ircor = derive2 { name="ircor"; version="1.0"; sha256="07apa4l4ib11xw25d44b403s3la29sqlid13q41hjrlfxafm91ld"; depends=[]; }; irg = derive2 { name="irg"; version="0.1.6"; sha256="1c9v5yk1512ga51356fjyl8zblw61p9m55vx89fy81qi0vcwxrgj"; depends=[chk data_table RcppRoll]; }; iriR = derive2 { name="iriR"; version="0.2.2"; sha256="0dzjafj2bnp9ss173pmzx61l50rr9a5lpiljjlf7y1pai9k0aay8"; depends=[dplyr ggplot2 ggsci gsheet reshape2 scales WDI]; }; @@ -11240,7 +11279,7 @@ in with self; { isdals = derive2 { name="isdals"; version="2.0-4"; sha256="15p432fskdz2r8523cw122mfhvrq8vdsdsrd0kz9yfin4b5z3zfh"; depends=[]; }; isdparser = derive2 { name="isdparser"; version="0.4.0"; sha256="05xkffmiiyhas5hzdjdylbrvh6fjc2fjh7s00iwjxkp4ba7rwq3g"; depends=[data_table lubridate tibble]; }; isingLenzMC = derive2 { name="isingLenzMC"; version="0.2.5"; sha256="1pd1s3a1rv7vlxd5db1pgwdjps8w5im4zz2h3qzal9cwbis0hb51"; depends=[]; }; - islasso = derive2 { name="islasso"; version="1.4.2"; sha256="0nks1ck5im83745argdkl53h2al3d23mmpws9qr688z800yxsznl"; depends=[glmnet Matrix]; }; + islasso = derive2 { name="islasso"; version="1.4.3"; sha256="0ym8yxpqhs8msi5svqa3mzp3x4jd7j4d8aampwchpkzyp2306rmv"; depends=[glmnet Matrix]; }; ismev = derive2 { name="ismev"; version="1.42"; sha256="19giigxwf62cdkf7mglsca649n2ignb9bxyg9zl7im1vm3ngnmqd"; depends=[mgcv]; }; isni = derive2 { name="isni"; version="1.3"; sha256="02a4vbhk26w796kxsyzqfp3bqxn64byfd5x5qma09lmdaxzmm71m"; depends=[Formula lme4 matrixcalc mvtnorm nlme nnet]; }; isnullptr = derive2 { name="isnullptr"; version="1.0.1"; sha256="0kwjxq59n3qncdw63vsdvz7v5mzbl5lmckdfgiiw35pzmahnxzh9"; depends=[]; }; @@ -11257,17 +11296,16 @@ in with self; { isokernel = derive2 { name="isokernel"; version="0.1.0"; sha256="04mrbq2822yhcq4q82xwm61a38zsk6w55jgjkp0xnardpv8a39pb"; depends=[Matrix RANN]; }; isopam = derive2 { name="isopam"; version="0.9-13"; sha256="0y1yy0922kq5jxyc40gz8sk9vlzwfkfg5swmc6lk4007g9mgc8fm"; depends=[cluster vegan]; }; isopat = derive2 { name="isopat"; version="1.0"; sha256="0fznvgycyd35dh7pbq1xhp667gsficlmycn5pcrqcbs89069xr1s"; depends=[]; }; - isoreader = derive2 { name="isoreader"; version="1.3.2"; sha256="0d0h57imbis7g58gdn7j0pwmc1s71b8ymqwqkg3byagd0yhrxf0w"; depends=[dplyr future glue lubridate magrittr progress purrr R_utils readr rlang stringr tibble tidyr tidyselect UNF vctrs]; }; isotone = derive2 { name="isotone"; version="1.1-0"; sha256="0alk0cma5h3yn4w2nqcahprijsm89b0gby9najbngzi5vnxr6nvn"; depends=[nnls]; }; isotonic_pen = derive2 { name="isotonic.pen"; version="1.0"; sha256="1lgw15df08f4dhrjjfr0jqkcvxwad92kflj2px526pcxwkj7cj3i"; depends=[coneproj Matrix]; }; - isotracer = derive2 { name="isotracer"; version="1.1.0"; sha256="14px45yqr0xgaqj7ssn2mb9n3gf6vpl6mvfg4qav6y082w5bgrgl"; depends=[BH coda data_table dplyr latex2exp magrittr pillar purrr Rcpp RcppEigen rlang rstan rstantools StanHeaders tibble tidyr tidyselect]; }; - isotree = derive2 { name="isotree"; version="0.5.5"; sha256="0w54rn3nq9qdqfjhliqfh4qzzm4q9gp8l8b9vvn72srq1svz3ir2"; depends=[Rcpp]; }; + isotracer = derive2 { name="isotracer"; version="1.1.2"; sha256="1p78p6604hcrnjvahk6q9dqcg6fcqgbqanrc820zxixn34k49v15"; depends=[BH coda data_table dplyr latex2exp magrittr pillar purrr Rcpp RcppEigen rlang rstan StanHeaders tibble tidyr tidyselect]; }; + isotree = derive2 { name="isotree"; version="0.5.14"; sha256="1bza63nm9sxlr126rilvlvpc43dng0ln4mp40lwb5s8xiv5qai29"; depends=[Rcpp]; }; ispd = derive2 { name="ispd"; version="0.2"; sha256="06h4z342d17rkpr2wwck4sq79kprdq6fgqf10jg8cs1f52q6pq0h"; depends=[ibd]; }; isqg = derive2 { name="isqg"; version="1.3"; sha256="1988bc5n4b5mgxrfl1774vfgaw7rxm9vlaxnkx26phjzhlr1ix9h"; depends=[BH R6 Rcpp Rdpack]; }; istacr = derive2 { name="istacr"; version="0.1.3"; sha256="14nhd3v8l827mb1fxfhsxklzxbf4316ijp2qkc99qp7ydmxbk0rd"; depends=[curl jsonlite]; }; isva = derive2 { name="isva"; version="1.9"; sha256="05qx9q0kg4ma23v4abhihw0vz017nq6hv2jzsiqx4d20ngh1dl4z"; depends=[fastICA JADE qvalue]; }; italy = derive2 { name="italy"; version="0.1.0"; sha256="0is90xp6980ja12jzi3816jq1y90ifcw6cvfmybb7invj6rr1cks"; depends=[]; }; - itan = derive2 { name="itan"; version="2.0.1"; sha256="0bvdi18dmjvxf5wrvipsf1q2bsmiwh2pb57kyrb2zlkfz3hz53ww"; depends=[ggplot2 reshape]; }; + itan = derive2 { name="itan"; version="3.1.1"; sha256="14aabrwvmqiyn8mypiaz80m24a0bczz2fl00f4dk9ham6hww4v1q"; depends=[ggplot2 reshape]; }; itcSegment = derive2 { name="itcSegment"; version="0.8"; sha256="032wj34313m3wigdfalq356srdzg0cvnvxnaxwxws6bc44r78izf"; depends=[maptools raster rgeos sp]; }; itdr = derive2 { name="itdr"; version="1.0"; sha256="1113lr17m370ipg3sxghqvk4fj36bgqs5bfvnli8rss2ffyzfin0"; depends=[MASS]; }; iteRates = derive2 { name="iteRates"; version="3.1"; sha256="1dycmlm3vldc60wz2jjdfbla14383911zfahgal5mx8whxwq95c5"; depends=[ape apTreeshape geiger gtools MASS partitions VGAM]; }; @@ -11279,6 +11317,7 @@ in with self; { itraxR = derive2 { name="itraxR"; version="1.4"; sha256="0gybgzc37q1i2zdik1xjn1l6p98jx8r8k722fsgfb17pxj4l4bkf"; depends=[broom compositions dplyr ggcorrplot ggfortify ggplot2 janitor readr rlang stringr tibble tidyr tiff]; }; its_analysis = derive2 { name="its.analysis"; version="1.6.0"; sha256="1ig7yq59y5xl1z182bbvgx8vsqs9sb1xscf6zxqn1qmy9f0ggf7v"; depends=[boot car forecast ggplot2 plyr]; }; itsadug = derive2 { name="itsadug"; version="2.4"; sha256="0759l7hhvj05dp92pz59xwrxjm9s1iwkwrdhs68l0fq57550j70l"; depends=[mgcv plotfunctions]; }; + itscalledsoccer = derive2 { name="itscalledsoccer"; version="0.1.0"; sha256="03ssjjzwjizmydy8534y27n020y2mvzdwinjckj96cfgrdw1px7m"; depends=[clisymbols crayon data_table dplyr glue httpcache httr jsonlite magrittr R6 rlang stringi tidyr]; }; itsdm = derive2 { name="itsdm"; version="0.1.1"; sha256="17r9m726grqwfjyy6gmnagc0yav358sxgcglyyww7k39cbhmyk57"; depends=[checkmate dplyr ecospat fastshap ggplot2 isotree ncdf4 outliertree patchwork raster rlang ROCit sf stars stringr tidyselect]; }; itsmr = derive2 { name="itsmr"; version="1.9"; sha256="0dmijaq6q31irwrjqv5gq1yfbgggwb3m6rwbg4lx1r9l3cqays7i"; depends=[]; }; iva = derive2 { name="iva"; version="0.1.0"; sha256="0dchb263ygilxapwsw2gpl18z12wcjsz8zz5fg7h068hmcysa88g"; depends=[Formula ucminf]; }; @@ -11297,12 +11336,13 @@ in with self; { ivsacim = derive2 { name="ivsacim"; version="2.1.0"; sha256="0pldg086kaaqc2wab1m61anabqaf0mffv1hsb8plz1qn2f8gdcp3"; depends=[Rcpp RcppArmadillo]; }; ivtools = derive2 { name="ivtools"; version="2.3.0"; sha256="1wv0r9dy893hafbbrjcjrphb8dgql71ya4zfbkl5dfp7d4ncfxl0"; depends=[ahaz data_table nleqslv numDeriv Rcpp survival]; }; ivx = derive2 { name="ivx"; version="1.1.0"; sha256="1dg09aajk9rqmrlwq4xw7qd5ra1z8wjxipy5l85sl1nzii250drq"; depends=[Rcpp RcppArmadillo]; }; - jSDM = derive2 { name="jSDM"; version="0.1.0"; sha256="0lkapg6v5lh53vnsg5hcr9qis8qimb6ilds23dqcyhi6w3dys9nb"; depends=[coda corrplot Rcpp RcppArmadillo RcppGSL]; }; + jSDM = derive2 { name="jSDM"; version="0.2.0"; sha256="13l3xpk7qfwvsq3zbpiq20j6168f4xxric055vf5p1siw0akvsh1"; depends=[coda corrplot doParallel foreach MASS Rcpp RcppArmadillo RcppGSL stringi]; }; jScore = derive2 { name="jScore"; version="0.1.0"; sha256="0hb63l10cwvpvix155d16v35lp1v88lp69f6q1s09njc6qdsg212"; depends=[]; }; jSonarR = derive2 { name="jSonarR"; version="1.1.1"; sha256="054q3ly471xa64yyz2as6vkr440ip1y8n5wl6s3zbhqy3bqkdqif"; depends=[jsonlite RCurl]; }; + jaatha = derive2 { name="jaatha"; version="3.2.2"; sha256="1if21hlbf0gz6p6f9h21cxdxcqxv3b54wx5zl4hmiaq9i6zrf8rr"; depends=[assertthat R6]; }; jab_adverse_reactions = derive2 { name="jab.adverse.reactions"; version="1.0.1"; sha256="0z7i6ni1bhih5yxwng1xxf8cgg3bb1il3p32rp5vfz2hfdm68vag"; depends=[]; }; jaccard = derive2 { name="jaccard"; version="0.1.0"; sha256="1dmla6qc1k8iw2d7zfjqhf13gqd2lpsrj09yh47ljf994fpab936"; depends=[dplyr magrittr qvalue Rcpp]; }; - jack = derive2 { name="jack"; version="1.1.1"; sha256="1mp7cfmh3bzfansb3dyqq347qk6kkf4ndn23pbd78h1xcb54555b"; depends=[DescTools gmp multicool mvp partitions]; }; + jack = derive2 { name="jack"; version="2.0.0"; sha256="1pm2d1k138qfz3rvvh83ybyvgr687y95c352629lyy1j87bsd15g"; depends=[DescTools gmp JuliaConnectoR multicool mvp partitions Ryacas]; }; jackalope = derive2 { name="jackalope"; version="1.1.3"; sha256="1cslrl2cvcpi2kisb2plkz8c3wfxkbkf816nnyb06k4mv3gy4r5d"; depends=[ape R6 Rcpp RcppArmadillo RcppProgress Rhtslib zlibbioc]; }; jackknifeKME = derive2 { name="jackknifeKME"; version="1.2"; sha256="0c5shl6s46kz7a623gccqk2plrrf2g29nwr6vbny6009pq3jvzam"; depends=[imputeYn]; }; jackstrap = derive2 { name="jackstrap"; version="0.1.0"; sha256="09y9pgb920lnbzlgm6j188q8lw1air83kx383a2f89zz7hhgg7jr"; depends=[Benchmarking doParallel dplyr fBasics foreach ggplot2 plyr reshape rlang scales tidyr]; }; @@ -11327,7 +11367,7 @@ in with self; { jenga = derive2 { name="jenga"; version="1.0.0"; sha256="1lnqvq979yw3im2cll2bynqafgcs81ndqkzi37smys4fnlb7kyi6"; depends=[abind ggplot2 imputeTS lubridate modeest moments narray philentropy purrr readr scales stringr tictoc]; }; jetpack = derive2 { name="jetpack"; version="0.5.2"; sha256="15hmkppq775crmwichg0fsg3ki7xqfavm9bz4li79armyiry44w2"; depends=[desc docopt remotes renv]; }; jetset = derive2 { name="jetset"; version="3.4.0"; sha256="0c99h5npsv2gf5d59s4qhkaqmjhbwa3prcykk24wzhnpfq6y6xhp"; depends=[AnnotationDbi org_Hs_eg_db]; }; - jfa = derive2 { name="jfa"; version="0.6.2"; sha256="12lm051zslby401417p6r150cjv64lrz8q9534lwsynbihiad7aw"; depends=[extraDistr]; }; + jfa = derive2 { name="jfa"; version="0.6.3"; sha256="1p4lw8yfkrw7187q4pcjai3ly5xlxvivwghi61jh89zrq8n54vbb"; depends=[extraDistr]; }; jgcricolors = derive2 { name="jgcricolors"; version="1.0.0"; sha256="1lg6yzqly5y2cf396b6rvfqplnfyz9v9ay2g4q9m110mng5ln96l"; depends=[ggplot2 knitr markdown RColorBrewer stringr]; }; jiebaR = derive2 { name="jiebaR"; version="0.11"; sha256="08v64xwr9jp4vh88x7y935khh4cmj8rwsjaxfd2c67n0445qppmd"; depends=[jiebaRD Rcpp]; }; jiebaRD = derive2 { name="jiebaRD"; version="0.1"; sha256="1wadpcdca4pm56r8q22y4axmqdbb2dazsh2vlhjy73rpymqfcph4"; depends=[]; }; @@ -11342,7 +11382,7 @@ in with self; { jmotif = derive2 { name="jmotif"; version="1.1.1"; sha256="0b2qllpfgs6q5fwfhxl5b4xdyzbvnja7ld766akf0xxznxvglkrg"; depends=[Rcpp RcppArmadillo]; }; jmuOutlier = derive2 { name="jmuOutlier"; version="2.2"; sha256="1vj9n1hsf780f7l0a22kmi3qm84j4dzjybjkh5zwh6bhwfjnjws3"; depends=[]; }; jmv = derive2 { name="jmv"; version="2.0"; sha256="0fhjp3ih46r34yiqxbd2kpwp88nhyrqfwh729l14sj3aw142nlbi"; depends=[afex BayesFactor car emmeans GGally ggplot2 ggridges GPArotation jmvcore lavaan MASS multcomp mvnormtest nnet PMCMR psych R6 ROCR vcd vcdExtra]; }; - jmvReadWrite = derive2 { name="jmvReadWrite"; version="0.2.4"; sha256="1sn17bbc7qijpv8z7libqx92ww1rp608dj9hbjbfraf6fjs5fq7q"; depends=[rjson zip]; }; + jmvReadWrite = derive2 { name="jmvReadWrite"; version="0.3.1"; sha256="0yg6j122x9hcyjw5lfdz6fj4mpj5w8z3cdn9nlfi79yl7ivzf9dm"; depends=[rjson zip]; }; jmvconnect = derive2 { name="jmvconnect"; version="2.0.0"; sha256="1q412v8z0wbiqab4czabg75w976591lh59gbbhqz1avkas3jjhf2"; depends=[BH evaluate httr jmvcore rappdirs Rcpp]; }; jmvcore = derive2 { name="jmvcore"; version="2.2"; sha256="009hkg378vfkzxbz323m7zfmfyh0j742xf4381qb6s81v3wmg4dq"; depends=[base64enc jsonlite R6 rlang stringi]; }; job = derive2 { name="job"; version="0.3.0"; sha256="0d7pw3q5lqlgmav1vx63y8l6gdav96656bg378wj001rx5gx052h"; depends=[digest rstudioapi]; }; @@ -11357,7 +11397,7 @@ in with self; { jointNmix = derive2 { name="jointNmix"; version="1.0"; sha256="0ibh7hqkpzlfk3bk4d2dd64jhr8cvw563k082vwnljiam7k5nj4b"; depends=[]; }; jointPm = derive2 { name="jointPm"; version="2.3.1"; sha256="1c2cn9sqwfyv9ksd63w8rrz0kh18jm2wv2sfdkgncjb7vfs4hbv9"; depends=[]; }; jointseg = derive2 { name="jointseg"; version="1.0.2"; sha256="0zilkxk30w3l9mwikmsgvpy5misjggs98c3bjrjy1pfc4b0is943"; depends=[acnr DNAcopy matrixStats]; }; - jomo = derive2 { name="jomo"; version="2.7-2"; sha256="1sbcpacxnxbzwa8rr9x2bq7hh0s3sw6yznr90dkp43n6xk5xaqir"; depends=[lme4 MASS ordinal survival]; }; + jomo = derive2 { name="jomo"; version="2.7-3"; sha256="0qq03zspmh8x2c8w882ynsw7wshr9b0fyrpwnqx5yc1xlzrqffcx"; depends=[lme4 MASS ordinal survival tibble]; }; jordan = derive2 { name="jordan"; version="1.0-1"; sha256="1d0my0lf8bmlmygz9f23skywzsrhy4xaykyrblbmhb00l0vxpa5s"; depends=[emulator mathjaxr onion]; }; josaplay = derive2 { name="josaplay"; version="0.1.3"; sha256="0q6kjk3mjxwbqvq3zz0ylpi1viznp9pxzngqpjzv5sibv0ndh0lf"; depends=[magrittr utf8]; }; jose = derive2 { name="jose"; version="1.2.0"; sha256="09k6wnnqlsbmlag4156rcsnavph52grqagkax9kd1sxgpknril3v"; depends=[jsonlite openssl]; }; @@ -11365,6 +11405,7 @@ in with self; { joyn = derive2 { name="joyn"; version="0.1.4"; sha256="17x9rwcrqv7qx9w0cfyshjsij9cdl0fk13cfqbv0ibnc2nfycw87"; depends=[cli data_table glue rlang]; }; jpeg = derive2 { name="jpeg"; version="0.1-9"; sha256="0wihj538wdnr71wdldym83qadb4kh68a6rkallwbh2f25r27b881"; depends=[]; }; jpmesh = derive2 { name="jpmesh"; version="2.1.0"; sha256="0q8adf582h92qwdwgh4dk53s8rixrrh96r8vzy6bwxvizqf0i3y8"; depends=[leaflet magrittr memoise miniUI purrr rlang sf shiny tibble units vctrs]; }; + jpstat = derive2 { name="jpstat"; version="0.2.0"; sha256="051mlyxd3xbik8fw1343xi72smmbaz6lvyn340m745y4jjx48006"; depends=[dplyr httr lubridate navigatr pillar progress purrr rlang stringi stringr tibble tidyr vctrs]; }; jqr = derive2 { name="jqr"; version="1.2.2"; sha256="1v3qjqblwn15mlw3cgmrmh78kcckqrj54wnfyfhrfxdsiqi5d0dk"; depends=[lazyeval magrittr]; }; jquerylib = derive2 { name="jquerylib"; version="0.1.4"; sha256="04a40v4znpj98j7y6009d74a6g9dchj5rr3p08cgz9p3rlfw3g7h"; depends=[htmltools]; }; jrc = derive2 { name="jrc"; version="0.5.1"; sha256="0lg647nfijj6grlmwkasd6di5h6286dxmw1373k6n5gwym1g1l36"; depends=[httpuv jsonlite mime R_utils R6 stringi stringr]; }; @@ -11373,14 +11414,14 @@ in with self; { jrvFinance = derive2 { name="jrvFinance"; version="1.4.3"; sha256="0g3w65avys5chni0zlahzwqgv09z9na08yhay385ax33ddwrcrjv"; depends=[]; }; js = derive2 { name="js"; version="1.2"; sha256="0s5rj845255a4fzv4h76gcnnqyl5cg3c03r2ay3f00jxnxvvigcg"; depends=[V8]; }; jsTree = derive2 { name="jsTree"; version="1.2"; sha256="06mmz55brm6w19vnlk1w8qaz0n3czlyl4fs62nzgdlsdjn8pad1h"; depends=[data_table htmltools htmlwidgets jsonlite]; }; - jsTreeR = derive2 { name="jsTreeR"; version="1.5.0"; sha256="1bi36ic69a44191w5c7fkwvy2jq4rf7p5pklirrdwbdkhzirhgp2"; depends=[base64enc fontawesome htmltools htmlwidgets jquerylib miniUI R_utils rstudioapi shiny shinyAce]; }; + jsTreeR = derive2 { name="jsTreeR"; version="1.6.0"; sha256="0dq9616dcg9pmrj8gn2njfqh509f7syyy10kmlpdcry9fji8msz6"; depends=[base64enc fontawesome htmltools htmlwidgets jquerylib miniUI R_utils rstudioapi shiny shinyAce]; }; jskm = derive2 { name="jskm"; version="0.4.3"; sha256="04bm4haylhjj5wf09jmpznav7shnlnhag7kxl4yqp3z5572dvj1g"; depends=[ggplot2 gridExtra scales survey survival]; }; jsmodule = derive2 { name="jsmodule"; version="1.3.0"; sha256="0a8ckml3i792y0ddff34l686f07vl1bqrs6q3gjmqs0hcrwl0lll"; depends=[data_table devEMF DT epiDisplay geepack GGally ggplot2 ggpubr haven Hmisc jskm jstable labelled MatchIt maxstat officer pROC purrr RColorBrewer readr readxl rstudioapi rvg see shiny shinycustomloader shinyWidgets survC1 survey survIDINRI survival timeROC]; }; json64 = derive2 { name="json64"; version="0.1.3"; sha256="19q8qgf4wnd3np12ajy180klpjy0g2csw5micwb4sl7qfzl6wc7j"; depends=[jsonlite]; }; jsonStrings = derive2 { name="jsonStrings"; version="1.0.0"; sha256="1rcgfzcbypmq2fcngl63ik6z13ir1687ya8aww2v8bk56h19pdxa"; depends=[Rcpp]; }; jsonify = derive2 { name="jsonify"; version="1.2.1"; sha256="1kpv6whi6bggi0ij7krzfr0fly6c2j9y54fr5ahgcjp36amr34cj"; depends=[rapidjsonr Rcpp]; }; jsonld = derive2 { name="jsonld"; version="2.2"; sha256="0bplz2s97wl9yp383jazykh5647iw6kbr1zanqai2s0sxp1xbwn8"; depends=[curl jsonlite V8]; }; - jsonlite = derive2 { name="jsonlite"; version="1.7.3"; sha256="0n65x9ifxjssb000g7psgh9pgl374ax2ni1if9kp3sx56rg0n2kj"; depends=[]; }; + jsonlite = derive2 { name="jsonlite"; version="1.8.0"; sha256="0k6dal7gmm19jl5sjsry5gwbnhsbrnn00q3iixig8k6bxgpr463v"; depends=[]; }; jsonstat = derive2 { name="jsonstat"; version="0.0.2"; sha256="0p0d3snl1971p5ikrkmwqrjjh4fy0b89qk3rnd1dayfb0r80xnnj"; depends=[cli dplyr jsonlite rlang]; }; jsontools = derive2 { name="jsontools"; version="0.1.0"; sha256="13i1g8lmzgs7hd0xay4gm8z2myzbjzi73fwp9x4f4f9mywj7zl5s"; depends=[bit64 DBI glue jsonlite magrittr pillar purrr rlang RSQLite tibble tidyselect vctrs withr]; }; jsonvalidate = derive2 { name="jsonvalidate"; version="1.3.2"; sha256="0myvm93azl6mj60l8fp91qa3ln3nnwj4p48xli8k215sm6zhhv1b"; depends=[V8]; }; @@ -11391,7 +11432,7 @@ in with self; { jtrans = derive2 { name="jtrans"; version="0.2.1"; sha256="18zggqdjzjhjwmsmdhl6kf35w9rdajpc2nffag4rs6134gn81i3m"; depends=[]; }; jubilee = derive2 { name="jubilee"; version="0.3.3"; sha256="1j2y44pfx9z2k169lh42b4dnfrrnk8jqsjn3wz4l9iscr6r91lx7"; depends=[data_table dplyr readxl xts yaml zoo]; }; juicr = derive2 { name="juicr"; version="0.1"; sha256="0vkbgbagcgaxj6k62b033ik85jnkzvshg8dm9cz7vq4yjqj3icip"; depends=[RCurl XML]; }; - junctions = derive2 { name="junctions"; version="2.0.1"; sha256="19fjh9nf3dp88gdxf6a1f49bann7g21g9rhrqj0fv38wss97cssr"; depends=[nloptr Rcpp RcppParallel tibble]; }; + junctions = derive2 { name="junctions"; version="2.0.3"; sha256="0lm3n8n9dfi9nsdazj74pd57kxm2kzrd1gxdzd0izzwgkjnsrsqc"; depends=[nloptr Rcpp RcppParallel tibble]; }; just_install = derive2 { name="just.install"; version="1.0.2"; sha256="1g82g4lhdk8mf1v4j47y2pgdrryz4175djx42kmg85vw7mlpvlcj"; depends=[dplyr remotes]; }; justifier = derive2 { name="justifier"; version="0.2.2"; sha256="1ww9rdi9khylvr15crkjibdzydlynwscphqyrcpnfig346i9yv72"; depends=[data_tree DiagrammeR DiagrammeRsvg purrr yaml yum]; }; jvcoords = derive2 { name="jvcoords"; version="1.0.3"; sha256="1ixmz3pj18zddgah59iqd4zbm5praw0dvn6c93dn5mrwx92pa65c"; depends=[]; }; @@ -11412,7 +11453,7 @@ in with self; { kaps = derive2 { name="kaps"; version="1.0.2"; sha256="0jg4smbq51v88i3815icb284j97iam09pc52rv3izxa57nv9a0gz"; depends=[coin Formula survival]; }; karaoke = derive2 { name="karaoke"; version="1.0"; sha256="1kx11lijdffhhh8prjgsamshgg2v29b2i129fjqi079waa335352"; depends=[seewave tuneR]; }; karel = derive2 { name="karel"; version="0.1.0"; sha256="0ncjzfzm8a6vx2mswvck3j6vnpqhzrjd5gd371xa5cgi0w1figa9"; depends=[dplyr gganimate ggplot2 gifski magrittr purrr tidyr]; }; - katex = derive2 { name="katex"; version="1.3.0"; sha256="07f381ja2pwgnjz9794zc6cg4qzr16zfm116f4dwjghyfblxs3qa"; depends=[V8]; }; + katex = derive2 { name="katex"; version="1.4.0"; sha256="0kgz2qck90h9kaxvy40nii03ib02z757bmw8sgacik82hmj0fxx8"; depends=[V8]; }; kayadata = derive2 { name="kayadata"; version="1.0.0"; sha256="1zmdwds1p430770426lhwhffissb44x27wqh1vbz7z52ma0h7l91"; depends=[dplyr forcats ggplot2 magrittr scales stringr tidyr]; }; kazaam = derive2 { name="kazaam"; version="0.1-0"; sha256="0j7vysnmiv9sggcxdn3nrgfvyl52pza4kkjnsa0xlb3fzq9qpwlz"; depends=[pbdMPI]; }; kcirt = derive2 { name="kcirt"; version="0.6.0"; sha256="1gm3c89i5dq7lj8khc12v30j1c0l1gwb4kv24cyy1yw6wg40sjig"; depends=[corpcor mvtnorm snowfall]; }; @@ -11433,7 +11474,7 @@ in with self; { kendallRandomWalks = derive2 { name="kendallRandomWalks"; version="0.9.4"; sha256="1mfqblvsn9p6gdcnbypfpzk0xzn6bz1ajbrkz2dap5w35dia3kxa"; depends=[actuar dplyr ggplot2 tibble]; }; kequate = derive2 { name="kequate"; version="1.6.3"; sha256="1ii3wlypm2qqkfxr3z1sdnmgc43h2zzlw6v4h2xxjdlznzxkp3mr"; depends=[equateIRT ltm mirt]; }; kerTests = derive2 { name="kerTests"; version="0.1.3"; sha256="0981q4n4wrv62x4b8jccj5hx58n975rls3sn3s0mz7ajhh1xxbi9"; depends=[]; }; - keras = derive2 { name="keras"; version="2.7.0"; sha256="004z9aajc0b7lw7g68ri7ndabdwbylmnlyvmziljmm29z6fzk8y5"; depends=[ellipsis generics glue magrittr R6 reticulate rlang tensorflow tfruns zeallot]; }; + keras = derive2 { name="keras"; version="2.8.0"; sha256="10zvy4lmhb2sbn0gsm12pf95pxj9bmi8241ap1n6170xsld9phcf"; depends=[ellipsis generics glue magrittr R6 reticulate rlang tensorflow tfruns zeallot]; }; kerasR = derive2 { name="kerasR"; version="0.6.1"; sha256="1yi7710vgcwz0jhishbga41sc6qyk83a0avmq01dvqjsz3cdfsfc"; depends=[reticulate]; }; kerastuneR = derive2 { name="kerastuneR"; version="0.1.0.4"; sha256="1xpilrlf0l323aikq1lflc166wr0xffj0psq1pfhlmm51zhv8190"; depends=[crayon data_table dplyr echarts4r keras magick plotly reticulate rjson RJSONIO rstudioapi tensorflow tidyjson]; }; kerdiest = derive2 { name="kerdiest"; version="1.2"; sha256="16xj2br520ls8vw5qksxq9hqlpxlwmxccfk5balwgk5n2yhjs6r3"; depends=[chron date evir]; }; @@ -11447,6 +11488,7 @@ in with self; { kernlab = derive2 { name="kernlab"; version="0.9-29"; sha256="0vqhndl4zm7pvkfvq0f6i9cbrm7pij6kmdp7d7w39pa100x6knn3"; depends=[]; }; kernplus = derive2 { name="kernplus"; version="0.1.2"; sha256="0z5zpj89nw7cdphg6frmjwqjxsl6g95xsa8zgsxmw2q75wwj1saz"; depends=[circular KernSmooth mixtools]; }; kernscr = derive2 { name="kernscr"; version="1.0.5"; sha256="1kcj710q8jbc34g6fcv2nk07hpsb81mfx8hvivgxq8x58028gjzs"; depends=[MASS mvtnorm]; }; + kesernetwork = derive2 { name="kesernetwork"; version="0.1.0"; sha256="0q42zry3qgg38aas0cxy7lwpj9mj45crcbs353d1d1is0w1avh09"; depends=[config data_table dplyr DT ggplot2 golem htmltools plotly reactable rintrojs rlang shiny shinyBS shinycssloaders shinydashboard shinydashboardPlus shinyhelper shinyWidgets stringr visNetwork yaml]; }; keyATM = derive2 { name="keyATM"; version="0.4.0"; sha256="1505r5753fv2xifcm960mzis0w8z4ax7rdbvvcy8bqckzi873m7n"; depends=[dplyr fastmap future_apply ggplot2 ggrepel magrittr MASS Matrix matrixNormal pgdraw purrr quanteda Rcpp RcppEigen RcppProgress rlang stringr tibble tidyr]; }; keyToEnglish = derive2 { name="keyToEnglish"; version="0.2.1"; sha256="1wzn93gp1v6y8qh9kypydqadnf6fc7xzjili77b7j402hvb0a8zg"; depends=[jsonlite openssl stringr]; }; keyholder = derive2 { name="keyholder"; version="0.1.6"; sha256="0f8pqmp4va8y92zlld42shig0r9idif5wi1vi378753pkibfd4yb"; depends=[dplyr rlang tibble]; }; @@ -11455,7 +11497,7 @@ in with self; { keyring = derive2 { name="keyring"; version="1.3.0"; sha256="1j8l6nmh4dr70kwybiais8yh687fdwrj134xynq68igw1b1rm8ga"; depends=[askpass assertthat filelock openssl R6 rappdirs sodium yaml]; }; keyringr = derive2 { name="keyringr"; version="0.4.0"; sha256="04f0z6mqj75l5qhiab0zvjsvz3jz1bp6dfazkpgihjmls5k11dnh"; depends=[stringr]; }; keys = derive2 { name="keys"; version="0.1.1"; sha256="0jq7c70hyxpaxkrciy2jz4bf2mdcbcnmpjniwqffk1lkaxr0ni9b"; depends=[htmltools jsonlite shiny]; }; - kfa = derive2 { name="kfa"; version="0.1.0"; sha256="1nq4lmnw9bfck98q43ldnbg94q0cq495qb0xsfgzpagg0y7dhml5"; depends=[caret doParallel flextable foreach GPArotation knitr lavaan officer rmarkdown semPlot semTools simstandard]; }; + kfa = derive2 { name="kfa"; version="0.2.0"; sha256="10y01rrmla58w7w10mbskf0hszfxy91r2d8cjmvzxg9qr0zsyyaw"; depends=[caret doParallel flextable foreach GPArotation knitr lavaan officer rmarkdown semPlot semTools simstandard]; }; kfda = derive2 { name="kfda"; version="1.0.0"; sha256="0861hzry55gj8ykdd8cwil1wb7234pkmipp4v1749fpmzggq1xgi"; depends=[kernlab MASS]; }; kfigr = derive2 { name="kfigr"; version="1.2.1"; sha256="0kys4j2n2n1v918v877798m34q431fpz0p0s6gxnfqnn26z2hy14"; depends=[knitr]; }; kgc = derive2 { name="kgc"; version="1.0.0.2"; sha256="14zbcimnglh5jj07dcaxp1dfjaz8syswy29nf8z39qmslv1hg9kk"; depends=[plyr shiny shinythemes]; }; @@ -11481,8 +11523,8 @@ in with self; { kknn = derive2 { name="kknn"; version="1.3.1"; sha256="1nzkg3dxaiqp87p56wm895qx5xn86hv5hjr73qvl1yiaxiq0x112"; depends=[igraph Matrix]; }; kko = derive2 { name="kko"; version="1.0.1"; sha256="08mgi7j1kirfnjsj3xi2wgr32cnqb88vxs15gfm6f1gq853xvhch"; depends=[doParallel ExtDist foreach grpreg knockoff]; }; klaR = derive2 { name="klaR"; version="0.6-15"; sha256="1bhgkq6spjawy5lsh663rnby4fzrx4k2qwqp4ci4p9pq8g35pzjv"; depends=[combinat MASS questionr]; }; - klassR = derive2 { name="klassR"; version="0.1.7"; sha256="1y2jbpb7yyah62a6ii61xllskz5h4jcnw7sxmwzfnw6jpnd5m3gr"; depends=[httr jsonlite tm]; }; - klausuR = derive2 { name="klausuR"; version="0.12-10"; sha256="12fjs4dnwaki8sz718xgsg8qrqhsgf87cs0bylf0p3f5k8hrmk4b"; depends=[polycor psychometric xtable]; }; + klassR = derive2 { name="klassR"; version="0.1.9"; sha256="1drpiwmqyql6q69ldr8ya8sqg1m2jld5j7xs4dghwdpjlbipy6zv"; depends=[httr jsonlite tm]; }; + klausuR = derive2 { name="klausuR"; version="0.12-13"; sha256="0j05vmdcw0jagixw5b1s4lasv1n7bdlayxdqrnz97iv501pkj2qb"; depends=[psych xtable]; }; kldtools = derive2 { name="kldtools"; version="1.2"; sha256="1r6j6ddylzxsfmymnf8hp7sm8c2ckr8xrdz75xlkgp4fgay106r2"; depends=[]; }; klexdatr = derive2 { name="klexdatr"; version="0.1.2"; sha256="141xs03sb0ixhjpr388fwf5h124mqkbj0k1xqw0whdhrm5051qsz"; depends=[sf]; }; klic = derive2 { name="klic"; version="1.0.4"; sha256="1ggsdq8xcg6hi12rq356myhngx3j475gpwlvpynm1581r4z0lkbk"; depends=[cluster coca Matrix pheatmap RColorBrewer]; }; @@ -11506,7 +11548,7 @@ in with self; { knn_covertree = derive2 { name="knn.covertree"; version="1.0"; sha256="0msfcmwydws7q7m5jdb0dxab0nkbl7mq5llg6v3r4qrnlvrdggvz"; depends=[Matrix Rcpp RcppEigen]; }; knnIndep = derive2 { name="knnIndep"; version="2.0"; sha256="1fwkldgs2994svf3sj90pwsfx6r22cwwa22b30hdmd24l8v9kzn7"; depends=[]; }; knnp = derive2 { name="knnp"; version="2.0.0"; sha256="0qgq8la3zndlb1wwqv9b2kw52y9ns36pi4ds68pkm81bhzq5nqis"; depends=[doParallel foreach forecast parallelDist plyr]; }; - knnwtsim = derive2 { name="knnwtsim"; version="0.1.0"; sha256="0b902w012lkj18piyfn8mkjh45fdvw19v3wpsw5ng9gk4j7g4mwj"; depends=[]; }; + knnwtsim = derive2 { name="knnwtsim"; version="1.0.0"; sha256="1sxz1hzbx41z3w1qf2zf8fmf3pd64jrnc37ndxx28yc70vhwjd1n"; depends=[]; }; knockoff = derive2 { name="knockoff"; version="0.3.5"; sha256="00nh1wwj66krdng4afxkv0c0xyi5lk6f2g8iwzcd7c5l5ladab7y"; depends=[corpcor glmnet gtools Matrix Rdsdp RSpectra]; }; knotR = derive2 { name="knotR"; version="1.0-2"; sha256="0kd1b9wibpwyaanz9ny61qgfvcg4d3rzpy05sfshlpp0b1y8d3xj"; depends=[]; }; kntnr = derive2 { name="kntnr"; version="0.4.4"; sha256="1af5qhj82dixf1qcbz3sfj52pzgy8gnafzifwxnhrp7vpn4rnv6m"; depends=[base64enc dplyr httr jsonlite lubridate purrr rlang rstudioapi stringr tibble tidyr]; }; @@ -11516,7 +11558,6 @@ in with self; { kofnGA = derive2 { name="kofnGA"; version="1.3"; sha256="0w0881ydnqdah04sifi25ypzxdwnsiqxfq1xam4yhr670bdak1vm"; depends=[bigmemory]; }; kohonen = derive2 { name="kohonen"; version="3.0.10"; sha256="1ck7j13x701g67bx81x7plszz804jfhl1yg42krcj9x88vm5cscr"; depends=[Rcpp]; }; kokudosuuchi = derive2 { name="kokudosuuchi"; version="1.0.0"; sha256="0h4r7bd9989pahx34lc2i5h1f8nipir941l7sahhgz28lskfkc3h"; depends=[glue rlang sf stringr tibble]; }; - kolmim = derive2 { name="kolmim"; version="1.0"; sha256="0g1i0cazi4nhfwdd3ywqrar1sn7bw77w38qjii045w5vqg05srkp"; depends=[]; }; komaletter = derive2 { name="komaletter"; version="0.4.2"; sha256="1cll8cb69gyxl5mg04jibxf7szh38xrqksjkcswbgjcqidp6yxi2"; depends=[rmarkdown]; }; konfound = derive2 { name="konfound"; version="0.4.0"; sha256="14d8a1ngrf24gbxfg8c8h4svjvsjc3gflcnzxza17xv2rcgzygnr"; depends=[broom broom_mixed crayon dplyr ggplot2 mice purrr rlang tibble tidyr]; }; kosel = derive2 { name="kosel"; version="0.0.1"; sha256="1gdsy4i58byqxddpsm5nk1r3hlgik5gs2b8jqcm8n1r4ib6pg0ay"; depends=[glmnet ordinalNet]; }; @@ -11529,7 +11570,7 @@ in with self; { kriging = derive2 { name="kriging"; version="1.1"; sha256="04bxr34grf2nlrwvgrlh84pz7yi0r8y7dc2wk0v5h5z6yf5a085w"; depends=[]; }; krippendorffsalpha = derive2 { name="krippendorffsalpha"; version="1.1-1"; sha256="1vaqwimlmbxh2jy08f3bkpb9r4fz6gkx6cpzjkgiyspjaqhc8a1a"; depends=[]; }; krm = derive2 { name="krm"; version="2020.5-20"; sha256="1b6477cjv5k30djvrlbmwn91ghgwk24cfd58cb0q80xqhgiqvrzb"; depends=[kyotil]; }; - ks = derive2 { name="ks"; version="1.13.3"; sha256="0wyfdmhr753vpizns9kl7h7pfnnb16c7m7w9a4bpz62xcvgq1yyy"; depends=[FNN kernlab KernSmooth Matrix mclust mgcv multicool mvtnorm plot3D pracma]; }; + ks = derive2 { name="ks"; version="1.13.4"; sha256="15sm1ys7sk0gn7hr1vik4xrn4jdf837knwk7j8h32lr29w9mh917"; depends=[FNN kernlab KernSmooth Matrix mclust mgcv multicool mvtnorm plot3D pracma]; }; ksNN = derive2 { name="ksNN"; version="0.1.2"; sha256="06x471hck95xqy7rbh53ibhzh6kfjra7y9ipqdj2rqdkmfdj72q8"; depends=[Rcpp]; }; kselection = derive2 { name="kselection"; version="0.2.0"; sha256="1arg96r2pldvb89rfqnfpjxwksyac2mhmbimbkwzm7wrnbnrcn5d"; depends=[]; }; ksharp = derive2 { name="ksharp"; version="0.1.0.1"; sha256="1dnkj838y8c1b53mlljhjqs3nd864i9xcqsv9n4fw28b4br9m570"; depends=[]; }; @@ -11553,7 +11594,7 @@ in with self; { l1ball = derive2 { name="l1ball"; version="0.1.0"; sha256="1ryq1vfkwg465kgxbb2wf8df7qa85yr8lbx3a58j0az8dqkyzqix"; depends=[VGAM]; }; l1kdeconv = derive2 { name="l1kdeconv"; version="1.2.0"; sha256="1mk92sz9nsmxsn7yplhfcz07k022lrr61114ckrmm0x8hfd89zj8"; depends=[ggplot2 mixtools]; }; l1spectral = derive2 { name="l1spectral"; version="0.99.6"; sha256="19q30g67pf2gx2h6s3il87n910f011lih3lh9321pkh4idl4awnb"; depends=[aricode caret cvTools dplyr ggplot2 glmnet igraph Matrix Rcpp RcppArmadillo]; }; - l2boost = derive2 { name="l2boost"; version="1.0.1"; sha256="0f2gapzpvjnr8n1jgn60jpmcas4s8nk2q8q4k5v4ypwvpfqp7kk1"; depends=[MASS]; }; + l2boost = derive2 { name="l2boost"; version="1.0.3"; sha256="1ma11x5wb2iqh10wdlwbwdvgzm4qxp94c5pxgvnmwqzmjgngirdh"; depends=[MASS]; }; laGP = derive2 { name="laGP"; version="1.5-5"; sha256="1a269cy9qmjldb5hv1nl9naq1rr35z37xjpp4kannj6p560fm476"; depends=[tgp]; }; labdsv = derive2 { name="labdsv"; version="2.0-1"; sha256="099rzl9hy70rmb5fg0vx26mlhr4ra2s0hl3jgv22s8hqpvlmakas"; depends=[cluster MASS mgcv Rtsne]; }; label_switching = derive2 { name="label.switching"; version="1.8"; sha256="0xwwhn249aibip12yxjwlrpyqj6zvc95zc7n9jf2vjjpashyc3yk"; depends=[combinat lpSolve]; }; @@ -11570,16 +11611,15 @@ in with self; { lacrmr = derive2 { name="lacrmr"; version="1.0.3"; sha256="0zpfc4a7krwkwbf31idpmdzks4qassqnhxk1f9fcq1qjzqzhjkvi"; depends=[dplyr httr janitor jsonlite magrittr sjmisc stringr]; }; lactater = derive2 { name="lactater"; version="0.1.0"; sha256="0g3hl8q3rdxpn8m4yngmlswyqlnlgj528amn26msybcjzp7r2dbz"; depends=[broom dplyr forcats ggplot2 ggtext lubridate magrittr minpack_lm patchwork pracma rlang segmented stringr tidyr]; }; lactcurves = derive2 { name="lactcurves"; version="1.1.0"; sha256="1ksllpgz519gzrs8gwfgg7743vj3j7ikmbwgisdjs77sdxxl7xyz"; depends=[orthopolynom polynom]; }; - lacunaritycovariance = derive2 { name="lacunaritycovariance"; version="1.1-2"; sha256="15s05igbrvsl0jlc84750l4i1pahigjacvq6b6gjj9gbyjfs6cbm"; depends=[RcppRoll spatstat spatstat_core spatstat_geom spatstat_linnet]; }; + lacunaritycovariance = derive2 { name="lacunaritycovariance"; version="1.1-3"; sha256="0rf74mxylg9j5apcxk40wyfbwgsjwh322kc6wxbqxm4rgscs6shw"; depends=[RcppRoll spatstat spatstat_core spatstat_geom spatstat_random]; }; laeken = derive2 { name="laeken"; version="0.5.2"; sha256="1p3ccbaydlr52p8qmgmm2l6kryvq6jjjx7mqn2vv0gpjaxqhyy92"; depends=[boot MASS]; }; - laercio = derive2 { name="laercio"; version="1.0-1"; sha256="0la6fxv5k9zq4pyn8dxjiayx3vs9ksm9c6qg4mnyr9vs12z53imm"; depends=[]; }; lagged = derive2 { name="lagged"; version="0.3-1"; sha256="1zkfx1s6xvxagn4vrv3zkfkrwwibmqmilrfras2813v4y419kfcd"; depends=[]; }; lagsarlmtree = derive2 { name="lagsarlmtree"; version="1.0-1"; sha256="1v3a580scxb1v5na3ab3ax9qlzbnay7nhm3ln5l8f9zgsqrg5lyh"; depends=[Formula partykit spatialreg]; }; lakemorpho = derive2 { name="lakemorpho"; version="1.2.0"; sha256="0fcmrl6yi1dd0i1r4kyp8bf4yw1nwdk6862sdakfwr2jd1rxhi9q"; depends=[cluster geosphere raster rgdal rgeos sp]; }; laketemps = derive2 { name="laketemps"; version="0.5.1"; sha256="04742r379bzgbfr4243wwkb26cvfmnw50jzgygq7vblq00grzska"; depends=[dplyr reshape2]; }; lamW = derive2 { name="lamW"; version="2.1.1"; sha256="05b37kx4jpszx2hkm47d7cjkf8544f7r8x26q68yp9c6zqm9gbc3"; depends=[Rcpp RcppParallel]; }; lambda_r = derive2 { name="lambda.r"; version="1.2.4"; sha256="1mh1g0gsd58gng0hb29vww2yqb2jfs07kba5kxnnqck5j3izwlnj"; depends=[formatR]; }; - lambdaTS = derive2 { name="lambdaTS"; version="1.0.0"; sha256="0bd1kvvw573vagx7k2nylawgaf826bvqms4ar56cx54hys0blmm5"; depends=[abind bestNormalize bizdays fANCOVA ggplot2 imputeTS lubridate modeest narray purrr readr scales stringr tictoc torch]; }; + lambdaTS = derive2 { name="lambdaTS"; version="1.1"; sha256="0fb44q5997588y6cv10kq3jv3qvwhg99q15i4cka4hsww08i9ib2"; depends=[abind bizdays car fANCOVA ggplot2 imputeTS lubridate modeest narray purrr readr scales stringr tictoc torch]; }; lambdr = derive2 { name="lambdr"; version="1.1.0"; sha256="02piqnw1n444sa396bbmplf3br7bh70qkn4dwvkzxj558ddv9l83"; depends=[httr jsonlite logger]; }; lamme = derive2 { name="lamme"; version="0.0.1"; sha256="1x9jl79iqikpjixajly1k8w2nkzskns2m0v242giknl0ikw298h1"; depends=[]; }; landest = derive2 { name="landest"; version="1.1"; sha256="1gcjxn9g3zq37glb92xgv2r9w5yq6hwsmgfmv2ijr66lla0qxsf4"; depends=[survival]; }; @@ -11590,14 +11630,14 @@ in with self; { landscapeR = derive2 { name="landscapeR"; version="1.2"; sha256="1zm5mj861ycbc2m28yjqnkifx8grc4l718mf8r422m78jfakvcjy"; depends=[raster Rcpp]; }; landscapemetrics = derive2 { name="landscapemetrics"; version="1.5.4"; sha256="1qsm0h6lcg4a7s6g1am305rcxbrrf2hb6ypd29g5k7kj80fwg1rl"; depends=[cli ggplot2 raster Rcpp RcppArmadillo sp tibble]; }; landscapetools = derive2 { name="landscapetools"; version="0.5.0"; sha256="11zp6r414nkj8vhsbryzhkxmpal2bva8msaxf1v69xax70ilxyf1"; depends=[ggplot2 raster Rcpp tibble]; }; - landsepi = derive2 { name="landsepi"; version="1.1.1"; sha256="036f9gr5dhjh803958vrw2nnrd4fqqwh79j95fcrr2bx5lnf5x4g"; depends=[DBI doParallel fields foreach Matrix mvtnorm Rcpp RSQLite sf sp splancs testthat]; }; + landsepi = derive2 { name="landsepi"; version="1.1.2"; sha256="18mgscfc21rl4fdsrhw06ydrd29w2wwfn69lm3cvw4illb2vn64r"; depends=[DBI doParallel fields foreach Matrix mvtnorm Rcpp RSQLite sf sp splancs testthat]; }; languageR = derive2 { name="languageR"; version="1.5.0"; sha256="1iipnr2b4hd2w718prbh075j56m5xnchlcb2vg26m16qpydp6afn"; depends=[]; }; languagelayeR = derive2 { name="languagelayeR"; version="1.2.4"; sha256="1q82shdcdd84nr6bnfwgyyb81z8dycvj1i3vhwvdg710s15rgiyk"; depends=[attempt curl httr jsonlite]; }; languageserver = derive2 { name="languageserver"; version="0.3.12"; sha256="0dmsjnn84r3wlzrf91xwxcwi4y9vcrwiymz14ixw0jc0kys185a3"; depends=[callr collections fs jsonlite lintr R6 roxygen2 stringi styler xml2 xmlparsedata]; }; languageserversetup = derive2 { name="languageserversetup"; version="0.1.2"; sha256="05i8kcp1zpbkrqpq5vxxvxk9p7phyngxl0q6v76va0i7qnmy1v7a"; depends=[]; }; lans2r = derive2 { name="lans2r"; version="1.1.0"; sha256="0svqaz1j8vhfnm31bfp4gqshdj73wmljva4kxcv2qajmcdiqbd2s"; depends=[dplyr ggplot2 R_matlab reshape2 rlang tidyr]; }; lar = derive2 { name="lar"; version="0.1-2"; sha256="0qda0y4ag10kg83wxs3z754kc8c1dg2rwciy64klk7an4ln43i5b"; depends=[data_table treemap xlsx]; }; - lares = derive2 { name="lares"; version="5.0.5"; sha256="1gn72dl3w6zdnllmj30s5wy8v0x0ww98ydhshx42hn3miil1cv32"; depends=[dplyr ggplot2 h2o httr jsonlite lubridate magrittr openxlsx patchwork pROC rlang rpart rpart_plot rvest stringr tidyr yaml]; }; + lares = derive2 { name="lares"; version="5.1.0"; sha256="0g85csp1f2yc8jwlzanjivp6s3jx44w4p3ippcarq6s7nrz9p228"; depends=[dplyr ggplot2 h2o httr jsonlite lubridate magrittr openxlsx patchwork pROC rlang rpart rpart_plot rvest stringr tidyr yaml]; }; largeList = derive2 { name="largeList"; version="0.3.1"; sha256="0csijzlxajj0rh24w5n7fs6ss301zr6zfv5khyq4a9g437bwhc2i"; depends=[]; }; lars = derive2 { name="lars"; version="1.2"; sha256="0blj44wqrx6lmym1m9v6wkz8zxzbjax2zl6swgdczci0ixb5nx34"; depends=[]; }; lasso2 = derive2 { name="lasso2"; version="1.2-22"; sha256="1l87djh539m444p5nl9975dd3v5nc7j8af9rj4xr54h5d0mbcbjv"; depends=[]; }; @@ -11609,7 +11649,7 @@ in with self; { latentgraph = derive2 { name="latentgraph"; version="1.1"; sha256="11h7nrd81licvdikiwwfkz4x9i7drz09w5ns672b7fw0pj4qqgsr"; depends=[glmnet MASS pracma Rcpp RcppArmadillo]; }; latentnet = derive2 { name="latentnet"; version="2.10.5"; sha256="05yjf7a16imv1p2lg5dmfk183xll49crnkg0mbz4c4b39nksy85v"; depends=[abind coda ergm MASS mvtnorm network sna statnet_common]; }; later = derive2 { name="later"; version="1.3.0"; sha256="0acqg29hcm2iq1418b54np7zb5pnr3xzrwc3ijv2pz9wra10ix88"; depends=[Rcpp rlang]; }; - latex2exp = derive2 { name="latex2exp"; version="0.9.3"; sha256="1r3jab71hl7hqi53cd63r819xlyn2ay6867184gzkxm0m3nhhcnh"; depends=[magrittr stringr]; }; + latex2exp = derive2 { name="latex2exp"; version="0.9.4"; sha256="0zbbrbgg524lpm733j8qsqk5ssg75c51s6dgzb18c6fk8byrx945"; depends=[magrittr stringr]; }; latexdiffr = derive2 { name="latexdiffr"; version="0.1.0"; sha256="021lhswy8nik2h1951h1affg8x5lchsa2amyx7fwrajp4bgq72yk"; depends=[fs rprojroot]; }; latexpdf = derive2 { name="latexpdf"; version="0.1.7"; sha256="0n0hzr9jkg13kn56jcghcg4a6y8x0c3jffcvxv621azd9ldljgfl"; depends=[]; }; latrend = derive2 { name="latrend"; version="1.2.1"; sha256="1dn0s015mjb9kv4gjswd439hbmr6r8xn0s4ckwp23wg6srhnmiza"; depends=[assertthat data_table foreach magrittr matrixStats R_utils Rdpack]; }; @@ -11638,7 +11678,6 @@ in with self; { lazysf = derive2 { name="lazysf"; version="0.1.0"; sha256="19g0qzm0dxsa8m4dj4zmz8r674dw43pqs5gg6n3xfgm5dl9772jb"; depends=[DBI dbplyr dplyr magrittr sf tibble]; }; lazysql = derive2 { name="lazysql"; version="0.1.3"; sha256="18vff80rl8ckjwfqi9dhzs1q35a1wrxvynidji6dy2kvvk38xnpa"; depends=[checkmate magrittr plyr]; }; lazytrade = derive2 { name="lazytrade"; version="0.5.3"; sha256="055wyaf36f5g27wly24i0sbf2k0rriga8xcgn241gszlzagrnh55"; depends=[cluster dplyr ggplot2 h2o lifecycle lubridate openssl readr ReinforcementLearning stringr tibble]; }; - lba = derive2 { name="lba"; version="2.4.4"; sha256="0izqndm992zv3sg8v5lpnxbdbxhpxl6hq3bf6xgq3pnw8vl3f6nb"; depends=[alabama MASS plotrix rgl scatterplot3d]; }; lbfgs = derive2 { name="lbfgs"; version="1.2.1"; sha256="0p99g4f3f63vhsw0s1m0y241is9lfqma86p26pvja1szlapz3jf5"; depends=[Rcpp]; }; lbfgsb3c = derive2 { name="lbfgsb3c"; version="2020-3.2"; sha256="07mhiaxhjjma5c65z3pz7wchgsqn4b19labzyq25ncnmj319fxrg"; depends=[numDeriv Rcpp RcppArmadillo]; }; lbiassurv = derive2 { name="lbiassurv"; version="1.1"; sha256="1i6l3y4rasqpqka7j39qjx22wjbilgc9pkp05an52aysfvfxy193"; depends=[actuar]; }; @@ -11647,7 +11686,6 @@ in with self; { lbreg = derive2 { name="lbreg"; version="1.3"; sha256="1z9vixf6sl0k9lizngc3859lk32srkk1d8y133sl6s37ppmqb4s2"; depends=[MASS]; }; lcars = derive2 { name="lcars"; version="0.3.7"; sha256="1hjlcl57aazcm5hgjiwmi116rk13z2gr65mpgcvyc0p9xih8bvdf"; depends=[ggplot2 shiny trekcolors]; }; lcc = derive2 { name="lcc"; version="1.1.3"; sha256="0hbv0nv421ldk10b4qr8dq7ww4w1342sl3s8gw0slfigxbbxv4bh"; depends=[doRNG doSNOW foreach ggplot2 hnp nlme]; }; - lcda = derive2 { name="lcda"; version="0.3"; sha256="1ximsyn6qw2gfn7b1hdpbjs6h6nk7hrignlii0np1lbf0k8l4xxl"; depends=[poLCA]; }; lchemix = derive2 { name="lchemix"; version="0.1.0"; sha256="1g2w57fi6kvsyir14hnxh0v6xwjdnbisafvjxvn1g6a4h55dg9i0"; depends=[MCMCpack mvtnorm]; }; lclGWAS = derive2 { name="lclGWAS"; version="1.0.3"; sha256="03b6ijqvyirv96hc3dsqf4f0zzqlmq5451mcb14d2mw3s6xy1vmq"; depends=[BH Rcpp]; }; lcmm = derive2 { name="lcmm"; version="1.9.5"; sha256="0c88hy8bqkf2h8a6q06l5sk294g68hkwniv3dv6c4nf9dazvzi7n"; depends=[mvtnorm nlme randtoolbox survival]; }; @@ -11664,10 +11702,10 @@ in with self; { ldat = derive2 { name="ldat"; version="0.3.3"; sha256="1n8v4nzfv3ayr46ahrz60vasam8mx1phb4vss05d9xh7sxlkx7gv"; depends=[BH lvec Rcpp]; }; ldatuning = derive2 { name="ldatuning"; version="1.0.2"; sha256="0367y6k5i4sccwfcm89xyc62qblrlwnm6hsa2jf346rnrfz9hkkc"; depends=[ggplot2 reshape2 Rmpfr scales slam topicmodels]; }; ldbod = derive2 { name="ldbod"; version="0.1.2"; sha256="1ylzkswnhf4jnjx2ijasy49pj78ffx333za0bx2fnf3g85kicqiv"; depends=[mnormt RANN]; }; - ldbounds = derive2 { name="ldbounds"; version="1.1-1.1"; sha256="10rmkidvvhwnrkc62c5ld44xhbvx1k8mch28h1yryakn8gznp3p8"; depends=[lattice]; }; + ldbounds = derive2 { name="ldbounds"; version="2.0.0"; sha256="0sm2hy1bqp4z78vgd7m4a307mzqz8jwfwdyga683yr2jk5grs9yl"; depends=[]; }; lddmm = derive2 { name="lddmm"; version="0.1.0"; sha256="19y2249fj1k1qq4lp6qzbd3jjwlz2li1710k3l7j7a9gg3rq9gfs"; depends=[dplyr ggplot2 gtools LaplacesDemon latex2exp plyr RColorBrewer Rcpp RcppArmadillo RcppProgress reshape2 rgen tidyr]; }; ldhmm = derive2 { name="ldhmm"; version="0.5.1"; sha256="1jwgxwzz56n6hhpp1qks1x0jsfbrjgfsl6h5sp7498l4d2f279ij"; depends=[ecd ggplot2 moments optimx scales xts zoo]; }; - ldsep = derive2 { name="ldsep"; version="2.1.2"; sha256="1kpqmwphkhw9l2s8mz4s6mjfjlysivpzqvhpncw5nphhgdqd22j6"; depends=[abind ashr corrplot doParallel foreach lpSolve matrixStats modeest Rcpp RcppArmadillo]; }; + ldsep = derive2 { name="ldsep"; version="2.1.4"; sha256="0wl446ajx4k8zsfybr4n385phblxpa74gi7d3m86zyn1x4z9md50"; depends=[abind ashr corrplot doParallel foreach lpSolve matrixStats modeest Rcpp RcppArmadillo]; }; ldsr = derive2 { name="ldsr"; version="0.0.2"; sha256="0wmxpglad1mk2c1gi9kxmh149r8ad0l8i2xlfs1hdjb6a4wxsklr"; depends=[data_table foreach MASS Rcpp RcppArmadillo]; }; leabRa = derive2 { name="leabRa"; version="0.1.0"; sha256="08yiwyfg9bp4i9w5yyw9p63wyvgj39kd64y3h21j2jmpw8zxncdq"; depends=[plyr R6]; }; leaderCluster = derive2 { name="leaderCluster"; version="1.2"; sha256="1lqhckarqffm2l3ynji53a4hrfn0x7zab7znddia76r2h6nr02zb"; depends=[]; }; @@ -11676,8 +11714,8 @@ in with self; { leafdown = derive2 { name="leafdown"; version="1.0.0"; sha256="1zvgbglrb4javazvyph7b48x3qab7kiziiya1a1wccdm9l6qh58w"; depends=[checkmate leaflet magrittr R6 shiny shinyjs]; }; leafem = derive2 { name="leafem"; version="0.1.6"; sha256="0ml110rva6ca8ycy0mrivq3wsj0dvyi5f62i92948r7mk6kf0l6a"; depends=[base64enc geojsonsf htmltools htmlwidgets leaflet png raster sf]; }; leafgl = derive2 { name="leafgl"; version="0.1.1"; sha256="042jps6zh4xr0xj19a7fbgrcb6q6gsw2q5f191lyskr8iajdrz1h"; depends=[geojsonsf htmltools jsonify leaflet sf]; }; - leaflegend = derive2 { name="leaflegend"; version="0.6.0"; sha256="0gdagadqv8ka5pzc1rz4bnklmi6j04s538xv12jikaq3y13zlwn7"; depends=[base64enc htmltools htmlwidgets leaflet]; }; - leaflet = derive2 { name="leaflet"; version="2.0.4.1"; sha256="07whi3zkz1lmbqx5ydpiya802ck22ny0s7gskwnx7r8xbwlkiw5h"; depends=[base64enc crosstalk htmltools htmlwidgets leaflet_providers magrittr markdown png raster RColorBrewer scales sp viridis]; }; + leaflegend = derive2 { name="leaflegend"; version="0.6.1"; sha256="1wby363xbl8kc47pn5057gl812kazyi892067928ikyxq81lxqgl"; depends=[base64enc htmltools htmlwidgets leaflet]; }; + leaflet = derive2 { name="leaflet"; version="2.1.0"; sha256="0i2ziy3zmya3i0v4ma0b1ymw4mds7di0xjirs452n20z8l31lhhs"; depends=[base64enc crosstalk htmltools htmlwidgets leaflet_providers magrittr markdown png raster RColorBrewer scales sp viridis]; }; leaflet_esri = derive2 { name="leaflet.esri"; version="1.0.0"; sha256="01bwzxh2rdhpvvazaxsji8axl765q1ix1fdxla6i61nvqkpw3dz1"; depends=[htmltools leaflet leaflet_extras]; }; leaflet_extras = derive2 { name="leaflet.extras"; version="1.0.0"; sha256="0li7651cwlz7sg04xdrmvhkrf0n6amaydck7gqz0wkb6wq8hcyzw"; depends=[htmltools htmlwidgets leaflet magrittr stringr]; }; leaflet_extras2 = derive2 { name="leaflet.extras2"; version="1.1.0"; sha256="138d2ajma3fkz7nsh50z4gw5zaflas39gsy7k5l120hxr7nmzgfk"; depends=[htmltools leaflet magrittr]; }; @@ -11703,15 +11741,17 @@ in with self; { learnstats = derive2 { name="learnstats"; version="0.1.1"; sha256="1sa064cr7ykl4s1ssdfmb3v1sjrnkbwdh04hmwwd9b3x0llsi9vv"; depends=[ggplot2 Rcmdr shiny]; }; leastcostpath = derive2 { name="leastcostpath"; version="1.8.0"; sha256="1106wh2yy048jimiyb3gwm9d00jfq4wk0dnj4a5sfk90rkg28acw"; depends=[gdistance Matrix pbapply raster rgdal rgeos sp]; }; ledger = derive2 { name="ledger"; version="2.0.9"; sha256="0ynr1g7vfkabl78zjnshyxixk45g28bi9h1p4zjfl83009yhqjwx"; depends=[dplyr rlang stringr tibble tidyr tidyselect]; }; + leem = derive2 { name="leem"; version="0.1.0"; sha256="1sm9v3m95fbg3apvv3jjf47qxn8v6ipdsm1103dqk4zngmsz4xia"; depends=[tkrplot]; }; leerSIECyL = derive2 { name="leerSIECyL"; version="1.0.2"; sha256="1zx28gpnys9mmhq7wwljfnq92wj1h1vxgqiirnfmn36z942nvmxl"; depends=[RCurl]; }; - lefko3 = derive2 { name="lefko3"; version="4.2.0"; sha256="1fg9bmpf604prmffkbi92b4zx084dv4ka8ishc9fjqgmsy3mfnd2"; depends=[BH glmmTMB lme4 MASS MuMIn pscl Rcpp RcppArmadillo SparseM VGAM]; }; + lefko3 = derive2 { name="lefko3"; version="5.0.1"; sha256="1mf507kxl4g6jyvnvn5g8f8h3p18napgrbnvkmpnda8b564960m2"; depends=[BH glmmTMB lme4 MASS MuMIn pscl Rcpp RcppArmadillo SparseM VGAM]; }; legco = derive2 { name="legco"; version="0.1.4"; sha256="0fd1d2zf510lyrwclsy57d8lgqprk6p8c6ghxglgm6gbx9d2yrgg"; depends=[dplyr httr jsonlite]; }; - legion = derive2 { name="legion"; version="0.1.0"; sha256="0lpxg3jx9ll3748aixr84yl44ig8arqj6axzr80402kzjndc2z3h"; depends=[greybox nloptr pracma Rcpp RcppArmadillo smooth statmod zoo]; }; + legion = derive2 { name="legion"; version="0.1.1"; sha256="11gh281hf3nqzd3lbiqdp7y2qbpb933p92ix92hyg3rqai1fd0hb"; depends=[generics greybox nloptr Rcpp RcppArmadillo smooth zoo]; }; legislatoR = derive2 { name="legislatoR"; version="1.0"; sha256="1553hpb2cmv3hw6v4c7qwgg8n18jwx101yaqnmaaiv8gfyh6j43m"; depends=[curl dplyr]; }; legocolors = derive2 { name="legocolors"; version="0.3.1"; sha256="0ds9c2x0x590yk7mrjm4hh7k72p51slssg7jlprd71mw6hry91ma"; depends=[]; }; lehdr = derive2 { name="lehdr"; version="1.0.1"; sha256="0hg5a4w37wi6bqks2298ajsj8q6y3lvbx80wwg5364vnv7na3308"; depends=[dplyr glue httr rappdirs readr rlang stringr]; }; leiden = derive2 { name="leiden"; version="0.3.9"; sha256="03gaxpcab3a1av5lk8r5ll1s858gvyx5ndknci1sia96w1v44xc1"; depends=[igraph Matrix reticulate]; }; - leidenAlg = derive2 { name="leidenAlg"; version="1.0.1"; sha256="0d7g7l06gmind603v525nqgl3h2c24mbhrn6j6fi7hipbihzjnsm"; depends=[igraph Matrix Matrix_utils Rcpp RcppArmadillo RcppEigen sccore]; }; + leidenAlg = derive2 { name="leidenAlg"; version="1.0.2"; sha256="04n2sfz2s6jvls9i6x5ka5nday2ah6j2npwksh1dqwjib8dsqnsf"; depends=[igraph Matrix Matrix_utils Rcpp RcppArmadillo RcppEigen sccore]; }; + leidenbase = derive2 { name="leidenbase"; version="0.1.8"; sha256="0i8s9glgqffqiiriwcvmv6zlm83wbgkwwsd6wdkw7b7ladyzmhlf"; depends=[igraph]; }; leiv = derive2 { name="leiv"; version="2.0-7"; sha256="15ay50886xx9k298npyksfpva8pck7fhqa40h9n3d7fzvqm5h1jp"; depends=[]; }; lemna = derive2 { name="lemna"; version="0.9.1"; sha256="0aamkqcjw8n9mly8a7m1s1wfi6j5mx2kbbxfn9vbb21b9pqi2jl5"; depends=[deSolve ggplot2 gridExtra]; }; lemon = derive2 { name="lemon"; version="0.4.5"; sha256="1y3ljidhqdakxlya2npj2w0az820g8kw6gl1cfm4f0cxvzgd1ly4"; depends=[ggplot2 gridExtra gtable knitr lattice plyr rlang scales]; }; @@ -11720,7 +11760,7 @@ in with self; { leprechaun = derive2 { name="leprechaun"; version="1.0.0"; sha256="1y30s519502bqabzsf1njf3zzqlbmr4sbmsm57ci1r6dv4miijkh"; depends=[cli fs jsonlite roxygen2 usethis]; }; leri = derive2 { name="leri"; version="0.0.1"; sha256="1309v58xdw3p6y2wpnl64vgsds5kvfiary2a3fa041kz23jzbp3c"; depends=[ncdf4 raster]; }; lero_lero = derive2 { name="lero.lero"; version="0.2"; sha256="03ll7jzcay0swwpmxyf0y9k2h8mxx4p5v3ggm9dgdz4j99934l70"; depends=[]; }; - lessR = derive2 { name="lessR"; version="4.1.5"; sha256="1s08jsrrmhxdizcy6rzs5q2g3qklw423c8hjqc8czzwsksz1a60h"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase shiny viridisLite]; }; + lessR = derive2 { name="lessR"; version="4.1.6"; sha256="0b62cyvq40fx0kd829c58nwmpz2p0qdvqrc9ndynalrph6l183kx"; depends=[colorspace ellipse knitr lattice latticeExtra leaps openxlsx robustbase shiny viridisLite]; }; lest = derive2 { name="lest"; version="1.1.0"; sha256="1d69kvdl31crv4ik8bwylq3s3f4skzrjc4x49c79w443g64n2jp9"; depends=[]; }; lestat = derive2 { name="lestat"; version="1.9"; sha256="1skxymdf3ncmdbskh7711xxgwsmwxfxnl52gcgw06jscx6s6wrsd"; depends=[MASS]; }; letsR = derive2 { name="letsR"; version="4.0"; sha256="07l1wgwnkqnvh47ssg62vj88vgml52n0934w00pjxdk90kk3c5zs"; depends=[fields geosphere maps maptools raster rgdal rgeos sp XML]; }; @@ -11744,7 +11784,7 @@ in with self; { lgrdata = derive2 { name="lgrdata"; version="0.1.1"; sha256="0h1crdhqfp6hzx30lp0w015scf2566hhrl2i7mkxy868rkl3aig9"; depends=[]; }; lgtdl = derive2 { name="lgtdl"; version="1.1.5"; sha256="1sixq56d2px36q0xq3kl0zwj2yzm3q8fhgqjvmajcdd5jl8l7130"; depends=[]; }; lhmixr = derive2 { name="lhmixr"; version="0.1.0"; sha256="1c4ydgq1z2y0xk8xqdsim6xvgxdbl3gglfk5kcr9k4m01arvv0rf"; depends=[]; }; - lhs = derive2 { name="lhs"; version="1.1.3"; sha256="1l861h76q5w0nbnbybhgg7hiw7fks677jakyd49n1whwvd48sfz4"; depends=[Rcpp]; }; + lhs = derive2 { name="lhs"; version="1.1.4"; sha256="1dim6pw2vjvsk269dff5bzpnyh9rp4qa9gj8y61bd31384q5c92c"; depends=[Rcpp]; }; liGP = derive2 { name="liGP"; version="1.0.1"; sha256="01yhrzx67gz7j201mkv1aracrvjh4hxkrc7jn48cfwz0dp1lznws"; depends=[doParallel foreach hetGP laGP]; }; liayson = derive2 { name="liayson"; version="1.0.4"; sha256="0xxl2l24km563n649kxzr15q0f6ks7l5yab3ig229s50i6sbn8nd"; depends=[ape arules biomaRt distances e1071 gplots matlab phangorn plyr proxy RColorBrewer]; }; libbib = derive2 { name="libbib"; version="1.6.2"; sha256="1d6d4fc9bpj8lkkblqcccdcsf21136vdr38kzy91259z3525gvcg"; depends=[curl data_table pbapply stringr xml2]; }; @@ -11755,7 +11795,7 @@ in with self; { librarysnapshot = derive2 { name="librarysnapshot"; version="0.1.2"; sha256="0v4x564zpm58kxs5n84bi6mcjhbzjg6a2lc30vsc8kbm3qy0nq38"; depends=[]; }; libsoc = derive2 { name="libsoc"; version="0.7.3"; sha256="0baglknb67gmzr4cimlvz44f11np8glcdjdgs3jy8qlz0c8pm95p"; depends=[]; }; libstableR = derive2 { name="libstableR"; version="1.0.2"; sha256="1gkcgbc8a7ks9x8mqmlz98hk55q3qy62izam7csz1s0r5dzsyqcr"; depends=[Rcpp RcppGSL]; }; - lidR = derive2 { name="lidR"; version="3.2.3"; sha256="0132vbfdppw9fr029w8c6lcfg8jxbfvb2y3p3wgs2n776c6y6wky"; depends=[BH data_table future geometry glue lazyeval raster Rcpp RcppArmadillo rgl rlas sf sp]; }; + lidR = derive2 { name="lidR"; version="4.0.0"; sha256="1vmkmcgp509g6fcn8dphs8qv9hf9n6f5cx23n8h8d38mzf71x9vi"; depends=[BH classInt data_table glue lazyeval raster Rcpp RcppArmadillo rgl rlas sf sp stars terra]; }; lidaRtRee = derive2 { name="lidaRtRee"; version="3.1.2"; sha256="09gbiy18jd08h7fvshv36zil51hjmiib2sqcpv1vnrnmfly2fyrs"; depends=[car gvlma imager leaps lidR raster reldist sp]; }; lifecontingencies = derive2 { name="lifecontingencies"; version="1.3.8"; sha256="0q9lvckd98w87xl0045b0n76yy1q0yxacwrmh3xgp1xnzxv95wph"; depends=[markovchain Rcpp]; }; lifecourse = derive2 { name="lifecourse"; version="2.0"; sha256="1m8ihqvzhzpq2m2pdvh37bpq9pdbj23r3y0jkl3q8farh3qj473d"; depends=[TraMineR]; }; @@ -11774,13 +11814,14 @@ in with self; { likelihoodExplore = derive2 { name="likelihoodExplore"; version="0.1.0"; sha256="13cnql7pbx8qq1j3cfb3lkzzf2k55shpfa0jd00z30ys6imxzcfn"; depends=[lazyeval plyr]; }; likelihoodR = derive2 { name="likelihoodR"; version="1.0.7"; sha256="1bcrfx3v9xjyb2q44x26wf4d7p0f8nbcp1xhimk7y9rg05s7cxc9"; depends=[]; }; likert = derive2 { name="likert"; version="1.3.5"; sha256="0c4irxs7pp1z8nj4s8cq23daw4h94n3h7x4f6q1d85614qcl9l3p"; depends=[ggplot2 gridExtra plyr psych reshape2 xtable]; }; - lilikoi = derive2 { name="lilikoi"; version="2.0.4"; sha256="037iq4kqn9iwdq70hq1l7w1ak533ba43npnkr6yk6jnl7avf4bma"; depends=[car caret dplyr gbm ggplot2 glmnet h2o impute infotheo limma M3C Metrics MLmetrics pathifier pathview plyr preprocessCore pROC RCy3 reshape reticulate RWeka scales stringr survival survminer]; }; + lilikoi = derive2 { name="lilikoi"; version="2.1.0"; sha256="1xdw5vfwg5ccjzw4n63fqcgnn6v3i7c94dvhpfa1dd1qm7p4daf8"; depends=[car caret dplyr gbm ggplot2 glmnet h2o impute infotheo limma M3C Metrics MLmetrics pathview plyr preprocessCore princurve pROC RCy3 reshape reticulate RWeka scales stringr survival survminer]; }; lillies = derive2 { name="lillies"; version="0.2.9"; sha256="0ljqfl9w26z61fivzlr4sh371s418alzzkdlhghsq0w03871wd3h"; depends=[ddpcr dplyr knitr pracma progress rlang survival tidyr]; }; limSolve = derive2 { name="limSolve"; version="1.5.6"; sha256="1829rd2cnd8qj80z9a7sgc7gx4sf3kvl5g6d2a0lqqw30f9sjzmr"; depends=[lpSolve MASS quadprog]; }; lime = derive2 { name="lime"; version="0.5.2"; sha256="03b88s82f0386c44j3z74dwp9f765wx9n1ahrjpy0s2j0pfa5z09"; depends=[assertthat ggplot2 glmnet gower Matrix Rcpp RcppEigen stringi]; }; liminal = derive2 { name="liminal"; version="0.1.2"; sha256="1ka16fm0gzhpydlk5pjf1vjcb7ygx1d3iv4z8cs6ywzrq4bb5r61"; depends=[dplyr jsonlite matrixStats miniUI rlang shiny tourr vegawidget]; }; - limitplot = derive2 { name="limitplot"; version="1.2"; sha256="0wj1xalm80fa5pvjwh2zf5hpvxa3r1hnkh2z9z285wkbrcl0qfl2"; depends=[]; }; limonaid = derive2 { name="limonaid"; version="0.1.1"; sha256="0zch942aqxznxs1fghnxxxi5j700xfxnj2xn968nmnlnvayp8hhs"; depends=[httr jsonlite R6]; }; + limorhyde = derive2 { name="limorhyde"; version="1.0.1"; sha256="0ksz8chs5v7qss5yf24zcpszi6v0ylbn98zaxy7mz62qfx5i441g"; depends=[pbs]; }; + limorhyde2 = derive2 { name="limorhyde2"; version="0.0.7"; sha256="06w3yf391gzaz0rssbl8jp3n9jmywwkmaxbf8mqxds5zy94f4bry"; depends=[abind ashr checkmate data_table DESeq2 foreach HDInterval iterators limma mashr pbs zeallot]; }; lin_eval = derive2 { name="lin.eval"; version="0.1.2"; sha256="05saxzzwh3gs6a4ii63n5kjm06p399xkyrjnqvn9f164322p7pwb"; depends=[broom]; }; linERR = derive2 { name="linERR"; version="1.0"; sha256="1mhiyqfpwagg161ncp5ndd22hlh12qzr360nms13rgyd8a077cq7"; depends=[survival]; }; linLIR = derive2 { name="linLIR"; version="1.1"; sha256="1v5bwki5j567x2kndfd5nli5i093a33in31025h9hsvkbal1dxgp"; depends=[]; }; @@ -11806,14 +11847,13 @@ in with self; { linl = derive2 { name="linl"; version="0.0.4"; sha256="1wq0wm3k12sfvg0nzdsdxb4qc79kny7qvckxplfgaj6y62vcjxxl"; depends=[knitr rmarkdown]; }; linne = derive2 { name="linne"; version="0.0.2"; sha256="19x13hf3skvxihlpa8wy05vlc94yv7nfs8b1pr8br76wk1xdkjvx"; depends=[cli magrittr purrr R6 rlang shiny]; }; linpk = derive2 { name="linpk"; version="1.1.1"; sha256="0bii49b19kf50gbnv2am7kwy2gb9gkxv8vplcwlmm6k9b4gw9pjb"; depends=[mvtnorm]; }; - linprog = derive2 { name="linprog"; version="0.9-2"; sha256="1ki14an0pmhs2mnmfjjvdzd76pshiyvi659zf7hqvqwj0viv4dw9"; depends=[lpSolve]; }; + linprog = derive2 { name="linprog"; version="0.9-4"; sha256="1d34m2nyk7m6j2dci69bhy5mlw479xax1517j7f14pq7vhpsm9l1"; depends=[lpSolve]; }; lintools = derive2 { name="lintools"; version="0.1.5"; sha256="08n4nrrpp9k39f8zl75zn88gk3wdm3cvfsxcp4jzpwhlzz9v5bh9"; depends=[]; }; lintr = derive2 { name="lintr"; version="2.0.1"; sha256="14yfh641afg6griaadbdciyr3k94fl55s055qwzghgk5gdsj61zy"; depends=[codetools crayon cyclocomp digest httr jsonlite knitr rex rstudioapi testthat xml2 xmlparsedata]; }; lipidomeR = derive2 { name="lipidomeR"; version="0.1.2"; sha256="1a9zi821mn7w18lg7psc9bagi3c5snvwqgda2f10rw5jff60fkfd"; depends=[BiocManager dplyr ggplot2 knitr limma reshape2 shadowtext stringr tableone tidyr]; }; liqueueR = derive2 { name="liqueueR"; version="0.0.1"; sha256="0rpjib0dz39la63gy9bw9gmdfq2fcx40y4y4wcb6ky41qcjdp1nd"; depends=[itertools]; }; lira = derive2 { name="lira"; version="2.0.1"; sha256="10bjmapnlw5z5cnbdpkwisvjkmk7zi9xqrvgmb5psj317zcxfc2p"; depends=[coda rjags]; }; lisa = derive2 { name="lisa"; version="0.1.2"; sha256="05hijs66jfyr68yvmm1dn262p1k6y4q7f2zvqkfagcb483rhwi53"; depends=[tibble]; }; - lisp = derive2 { name="lisp"; version="0.1"; sha256="025sq46277q9i21189cbmx5dnrh5wfshc5k6la1wjilhr1iqf6nj"; depends=[]; }; lisrelToR = derive2 { name="lisrelToR"; version="0.1.4"; sha256="0zicq0z3hhixan1p1apybnf3v5s6v6ysll4pcz8ivygwr2swv3p5"; depends=[]; }; list = derive2 { name="list"; version="9.2"; sha256="1gn0g4qq9rr6vwnwq6525hx7iy3q3vmy3g2v3ba69v4jcdc0a0mx"; depends=[arm coda corpcor gamlss_dist magic MASS mvtnorm quadprog sandwich VGAM]; }; listArray = derive2 { name="listArray"; version="0.1.1"; sha256="0j8hdsda7p6m1q06mi32yh3wqsdjr77kb8js42nm63dgpfy7mvv5"; depends=[]; }; @@ -11832,7 +11872,7 @@ in with self; { liureg = derive2 { name="liureg"; version="1.1.2"; sha256="1zhc5fs47whjvvwwiivykxfchzbjbldyvdmqh9rp7ccwba2q3956"; depends=[]; }; live = derive2 { name="live"; version="1.5.13"; sha256="1s6yrbwlc4wqszl2yvy1x6d93my18ba8sm8pwfy547cd1x055vig"; depends=[breakDown data_table dplyr e1071 forestmodel ggplot2 gower MASS mlr shiny]; }; livechatR = derive2 { name="livechatR"; version="0.1.0"; sha256="1k0z6q3s9iw962m1lwlx45p95flzl5jg1xh6ng426v9jh1yyrbb2"; depends=[data_table dplyr jsonlite magrittr purrr]; }; - liver = derive2 { name="liver"; version="1.10"; sha256="0mmlaw8xn4fwwwxchi7mlvhcg4z04v6x472478qsmmf3vsbdjg3a"; depends=[class ggplot2]; }; + liver = derive2 { name="liver"; version="1.11"; sha256="1lrs33qvgg6flapazjx9x2han0x0n45zchdi63xvsbafi6cg3a93"; depends=[class ggplot2]; }; ljr = derive2 { name="ljr"; version="1.4-0"; sha256="0jby94ml8w6pwnxbmv6qfjww2myvvnn9vrmlqpdh71dhgp3z35py"; depends=[]; }; llama = derive2 { name="llama"; version="0.10.1"; sha256="1rw4lbz172hwb24r424qq86bw7m3xxl66k474wx1scpcrsix2nzw"; depends=[BBmisc checkmate data_table ggplot2 mlr parallelMap plyr rJava]; }; llbayesireg = derive2 { name="llbayesireg"; version="1.0.0"; sha256="0jhkmrjkqfm1flwsbpv6060j6g7cj4ngm0drvrlvsiqpni0k96mh"; depends=[coda ggplot2 llogistic MASS MCMCpack Rcpp rstan StanHeaders]; }; @@ -11854,11 +11894,8 @@ in with self; { lmeNBBayes = derive2 { name="lmeNBBayes"; version="1.3.1"; sha256="13shfsh9x6151xy8gicb25sind90imrwclnmfj96b76p5dvhzabm"; depends=[]; }; lmeSplines = derive2 { name="lmeSplines"; version="1.1-10"; sha256="0fy6hspk7rqqkzv0czvvs8r4ishvs7zsf4ykvia65nj26w7yhyia"; depends=[nlme]; }; lmec = derive2 { name="lmec"; version="1.0"; sha256="09shj01h2dl5lh7ch0wayr7qyhlmk0prv3p1vfgy91sn0wpbqlxr"; depends=[mvtnorm]; }; - lmem_qtler = derive2 { name="lmem.qtler"; version="0.1.1"; sha256="0qbllj66y294n1m8dsyrnwyvzscbzg8mb2dmjyghcrfaz925vkin"; depends=[lattice lme4 pastecs qtl stringr]; }; lmerTest = derive2 { name="lmerTest"; version="3.1-3"; sha256="1zd8gqjkazhxgpnnr484xwsq30p62fq8592nzyc171zjyplpbaim"; depends=[ggplot2 lme4 MASS numDeriv]; }; - lmeresampler = derive2 { name="lmeresampler"; version="0.2.0"; sha256="1qjxv3vrgw183hvya2k4qidnnx9w64lcksjm6v727kcigl3x9h1f"; depends=[catchr dplyr forcats ggdist ggplot2 HLMdiag magrittr Matrix nlmeU purrr statmod]; }; lmf = derive2 { name="lmf"; version="1.2"; sha256="1xqlqmjl7wf5b2s2a1k1ara21v74b3wvwl4mhbj9dkdb0jcrgfva"; depends=[]; }; - lmfor = derive2 { name="lmfor"; version="1.5"; sha256="1r301ajcp9ag23n0nw1rgwg8ss5cvinwqargbdg0jpqbhdrgaq7y"; depends=[magic nlme spatstat]; }; lmls = derive2 { name="lmls"; version="0.1.0"; sha256="0gv7mawdpcqvvf3f61aa1l0yi32z9bs41i36ggn1nwga837g33k3"; depends=[generics]; }; lmm = derive2 { name="lmm"; version="1.3"; sha256="13b5rvdbzljir1fn4zxv2lshbga64vwzn6884izif9v5dkd5b29j"; depends=[]; }; lmmot = derive2 { name="lmmot"; version="0.1.4"; sha256="1a8msh9yvvd7cv1zxlxdv8arlfvxqghxzcxls23v6ifl5jf4d1p3"; depends=[MASS maxLik]; }; @@ -11880,7 +11917,7 @@ in with self; { loadings = derive2 { name="loadings"; version="0.1.1"; sha256="0nickkdjkfsjy8k52243181fdd1jvj3rgpzkcfjsmacbjcdl169g"; depends=[]; }; loadr = derive2 { name="loadr"; version="0.1.3"; sha256="01nsjsv7c8grsizfisczqwjrz5saff0pgn7716ig4i8nzargvz7a"; depends=[]; }; lobstr = derive2 { name="lobstr"; version="1.1.1"; sha256="0vkif17825x33cz8r89j0qph4wj5l8fzfgl8nh2g7m2v140cxjdq"; depends=[crayon Rcpp rlang]; }; - locStra = derive2 { name="locStra"; version="1.7"; sha256="0pvxifzhafhb0iv2d9ar90j2436zjgdzav0dyjir7xrc4s597bxk"; depends=[Matrix Rcpp RcppEigen Rdpack RSpectra]; }; + locStra = derive2 { name="locStra"; version="1.8"; sha256="1013xilzp6ly88nr26jzmcyvxadccv72m4s6pc9z5qv2baykbisw"; depends=[Matrix Rcpp RcppEigen Rdpack RSpectra]; }; localFDA = derive2 { name="localFDA"; version="1.0.0"; sha256="099hqnd0q4ylg03qi7icc6a9w1x7p76vlv5wxk8f53l7y9pp27b3"; depends=[]; }; localICE = derive2 { name="localICE"; version="0.1.1"; sha256="1pyq6kdahsy9qa0jzmring48r0i9h4rkp8lxpf9afksgm1qn0c5z"; depends=[checkmate ggplot2]; }; localIV = derive2 { name="localIV"; version="0.3.1"; sha256="1z3q5hk6qfc1pzqdrxwm8y3am27648lfz66lm84bf8abifw4kk60"; depends=[KernSmooth mgcv rlang sampleSelection]; }; @@ -11891,7 +11928,7 @@ in with self; { locatexec = derive2 { name="locatexec"; version="0.1.1"; sha256="03vssc243nczwqp6z4adchcxql5aq0h3cs0daq5xwnncjmy3k7mx"; depends=[]; }; locationgamer = derive2 { name="locationgamer"; version="0.1.0"; sha256="0y99m003s177x57m4ynxd8jd2xzl5zb4bj7jnbc04h22ffdl6m6f"; depends=[]; }; locfdr = derive2 { name="locfdr"; version="1.1-8"; sha256="1falkbp2xz07am8jlhwlvyqvxnli4nwl188kd0g58vdfjcjy3mj2"; depends=[]; }; - locfit = derive2 { name="locfit"; version="1.5-9.4"; sha256="1vcw16qww4v4547w0gfvhqg60l051bsdlxa6zfcgcj9xbxf6dlyr"; depends=[lattice]; }; + locfit = derive2 { name="locfit"; version="1.5-9.5"; sha256="08yywswywmvyys8380576n43h3xyiviq1p2392zcivlbknnjp7zx"; depends=[lattice]; }; locits = derive2 { name="locits"; version="1.7.3"; sha256="0sjnwqiqwzdkglvbdxbkg17gjp0vyqvywsy0qq7adxj5hh0yah05"; depends=[igraph wavethresh]; }; locpol = derive2 { name="locpol"; version="0.7-0"; sha256="1p915n0l09kbwkly627074jslxl01yssp1rf0c7sygvsw6sgy5lm"; depends=[]; }; locpolExpectile = derive2 { name="locpolExpectile"; version="0.1.1"; sha256="1phwcnbk1vmdk3qmfx2nd6crplly2lb8gb57yl67ky3c4sryh358"; depends=[expectreg lestat locpol matrixcalc quantreg]; }; @@ -11901,7 +11938,7 @@ in with self; { lodr = derive2 { name="lodr"; version="1.0"; sha256="0bmdw489dv1069krnx9yi0bcgx1vx4ymc6s4pix4shha5c5fbiz4"; depends=[Rcpp RcppArmadillo Rdpack]; }; loe = derive2 { name="loe"; version="1.1"; sha256="1n16pgfxg9vcn729xxjbbvavg2ywbdcch9v2ph8nv3z7psc0q46c"; depends=[MASS]; }; loewesadditivity = derive2 { name="loewesadditivity"; version="0.1.0"; sha256="0j9vvh2ys09hy2k3mbrlf0p493ymrxvfsdcjw0p6rlls54z9lqqc"; depends=[dplyr ggplot2 gridExtra magrittr metR rlang rootSolve tidyr viridis]; }; - log = derive2 { name="log"; version="1.1.0"; sha256="04cl8qb2ivdili89h4cghcjqywpkz85v48g2vkg6hdlimcd63wff"; depends=[cli crayon R6]; }; + log = derive2 { name="log"; version="1.1.1"; sha256="1vzssrg2qqxd27b9d36v3mmkhgkx8n724ql9yhl5p8dy28zgsdxd"; depends=[cli crayon R6]; }; log4r = derive2 { name="log4r"; version="0.4.2"; sha256="0d7yxp3h7iy0miaprgp16n5vbxk0mvy8aci8r0mmml6wcl2h4jlj"; depends=[]; }; logKDE = derive2 { name="logKDE"; version="0.3.2"; sha256="09gachibj0klqa9ijw572lwphbh9qj6zqray5byq1dh7zsiq516q"; depends=[pracma Rcpp]; }; logNormReg = derive2 { name="logNormReg"; version="0.5-0"; sha256="0lv5m6yz1v8pi1svw9qh3gkq3r0lp13qhx3p6g6yvzqwd0px0pip"; depends=[]; }; @@ -11926,14 +11963,14 @@ in with self; { logitnorm = derive2 { name="logitnorm"; version="0.8.38"; sha256="01svs20dr0f1h66j5vn3ychjlgwzak96f8p9lmzd29anjlkm9x9q"; depends=[]; }; logitr = derive2 { name="logitr"; version="0.5.0"; sha256="13rg9ki20px0bhajbhx0q66kg1qs915vrg66v13nckrzqkiza2fk"; depends=[MASS nloptr randtoolbox]; }; loglognorm = derive2 { name="loglognorm"; version="1.0.1"; sha256="0rhx769a5nmidpbpngs2vglsbkpgw9badz3kj3jfmpj873jfnbln"; depends=[]; }; - logmult = derive2 { name="logmult"; version="0.7.3"; sha256="10dmvvwlaw8dn6h0343d8apn7rlc2b8nys3f38x9wlvd9xhhlwxm"; depends=[gnm qvcalc]; }; + logmult = derive2 { name="logmult"; version="0.7.4"; sha256="1k9izgna3bfi8gvnpks85gj3zv3lp35991ml58q7pcqqr78giii2"; depends=[gnm qvcalc]; }; lognorm = derive2 { name="lognorm"; version="0.1.10"; sha256="021g3g7hyxcrj2lzqfjxj2ypcn8c6qminr0l6sdydynvjdjjv0pc"; depends=[Matrix]; }; - logr = derive2 { name="logr"; version="1.2.8"; sha256="1pagik5ivaw7wqp7zr2n6nfm6v1q4sm9shl75n9fjk5g9f5ffrw0"; depends=[this_path withr]; }; + logr = derive2 { name="logr"; version="1.2.9"; sha256="0kji2dp2bnfff4x4lq1gz57k4zsjc4i56slb8kxiiipchmv6drrj"; depends=[this_path withr]; }; logspline = derive2 { name="logspline"; version="2.1.16"; sha256="12hkdi77vkic05p2vhap025xdcg1n53ywm239v18713pihdlj63l"; depends=[]; }; lokern = derive2 { name="lokern"; version="1.1-9"; sha256="1fms79bb4y6ryzmxhpc544zh52xgd879gpcigc24bjhd7whl9nry"; depends=[sfsmisc]; }; lolR = derive2 { name="lolR"; version="2.1"; sha256="0lrmn9lzyyfr1y0i7qp6xfpdxyisbkajwg0jkrqkiw687psnh2rc"; depends=[abind ggplot2 irlba MASS pls robust robustbase]; }; lolog = derive2 { name="lolog"; version="1.3"; sha256="0lfb3d7rxssvzd70gixpmr8r8hcmxplg5yy181hdrvjsdc8w8jn4"; depends=[BH ggplot2 intergraph Matrix network Rcpp reshape2]; }; - lomb = derive2 { name="lomb"; version="2.0"; sha256="08h1qk28vvia19rjcicjf8j1f7fhvk23k79yg7bprmffhj9r6vxw"; depends=[ggplot2 gridExtra]; }; + lomb = derive2 { name="lomb"; version="2.1.0"; sha256="1hgf28bs5g07v7j05qxahs0q3j683401ssqk1r256pvk8x9j445l"; depends=[ggplot2 gridExtra plotly pracma]; }; longCatEDA = derive2 { name="longCatEDA"; version="0.31"; sha256="0dji41lsknfwmgb2fczzm37dm97wvi45rh878w7pwlzwdh9vq8va"; depends=[]; }; longROC = derive2 { name="longROC"; version="1.0"; sha256="1fs11vqi4hy99d7shzzdvd6ic5gay6rh2027w6j0qpd04n8q88m8"; depends=[survival]; }; longRPart2 = derive2 { name="longRPart2"; version="0.2.3"; sha256="1vqcsxi6c4hqrpk3ns7yhghfryin1psxl38qkz2xz8cvyn58f685"; depends=[formula_tools ggplot2 MASS nlme rpart]; }; @@ -11964,7 +12001,7 @@ in with self; { lori = derive2 { name="lori"; version="2.2.2"; sha256="1153ilp1i849rwbbms4vfc6c1mxgpav04zfqm2sdj7s63nvknx6r"; depends=[data_table rARPACK svd]; }; lotri = derive2 { name="lotri"; version="0.3.1"; sha256="042jbvpaawmfklak56gnmwyp43q9scm539crlv38j8aafik1g2s5"; depends=[]; }; lowmemtkmeans = derive2 { name="lowmemtkmeans"; version="0.1.2"; sha256="08zhdw48rzw47yzhg4s37bkliyngxs46cyb57dvng1s3m0w0dhvi"; depends=[Rcpp RcppArmadillo]; }; - lowpassFilter = derive2 { name="lowpassFilter"; version="1.0-0"; sha256="1f05z18nn3184rksmsarfz79bxn3gj760f1z9h5h3agqc180krm3"; depends=[Rcpp]; }; + lowpassFilter = derive2 { name="lowpassFilter"; version="1.0-1"; sha256="02an3845dsxym2r8xb4xlg699vha28gw2jgy1hhmxs0mgklj6w2a"; depends=[Rcpp]; }; lpSolve = derive2 { name="lpSolve"; version="5.6.15"; sha256="1fpkyjyqykwa1dxnhiky01pm09syxg169lm7hpy39bdbg10vw9s6"; depends=[]; }; lpSolveAPI = derive2 { name="lpSolveAPI"; version="5.5.2.0-17.7"; sha256="1fsmipb97gglihrf424mz063fn67bf55jjahnbh53svkmm2qxg4y"; depends=[]; }; lpbrim = derive2 { name="lpbrim"; version="1.0.0"; sha256="1cbkzl23vgs9hf83ggkcnkmxvvj8867k5b9vhfdrznpqyqv1f2gp"; depends=[Matrix plyr RColorBrewer]; }; @@ -11983,7 +12020,7 @@ in with self; { lrequire = derive2 { name="lrequire"; version="0.1.3"; sha256="03c8h9v2xhlv7bj5jv117a27gaqaly2kdxs9zyihsm9yh9rg3d79"; depends=[]; }; lrgs = derive2 { name="lrgs"; version="0.5.4"; sha256="0mf6wqlv21z68w81hvpmhgngvdsklf3x2678d9c9lxfmqmpv4a7y"; depends=[mvtnorm]; }; lrmest = derive2 { name="lrmest"; version="3.0"; sha256="1yddkgza672z9y0ipgl92pg9prhmr387zsqf0qbi9k2yzfz2vvs6"; depends=[MASS psych]; }; - lrstat = derive2 { name="lrstat"; version="0.1.2"; sha256="06radfm59xq0m74bjf868nv8grl71fwxmwxqlks637l989z6kbrg"; depends=[Rcpp]; }; + lrstat = derive2 { name="lrstat"; version="0.1.3"; sha256="1fcqpaw3rkns0lsaixfv2fh4k852gz063y21kk65v4hdv7aizlwr"; depends=[Rcpp]; }; lsa = derive2 { name="lsa"; version="0.73.2"; sha256="1a33irqa6qvbc02z12rgbgv8kxq2gmahy7j5bg8b23lvvaxif06b"; depends=[SnowballC]; }; lsasim = derive2 { name="lsasim"; version="2.1.2"; sha256="1x6vgdslw6v91l1p1igrvnj3s4ap2igqcx3m95y1ada7kpl3b2jk"; depends=[cli mvtnorm polycor]; }; lsbclust = derive2 { name="lsbclust"; version="1.1"; sha256="1pbai58pfvhfcrd0nj13d54vrn9wrx2xapqhgqa1pkrjwbk5amj7"; depends=[clue doParallel foreach ggplot2 gridExtra mvtnorm plyr Rcpp reshape2]; }; @@ -11992,6 +12029,7 @@ in with self; { lsdv = derive2 { name="lsdv"; version="1.1"; sha256="0rl1xszr9r8v71j98gjpav30n2ncsci19hjlc9flzs1s20sb1xpr"; depends=[]; }; lsei = derive2 { name="lsei"; version="1.3-0"; sha256="1dka0rigfw4vj809qma2dkiwjb3nw5635ynnba5cm299cn7hb2b2"; depends=[]; }; lshorth = derive2 { name="lshorth"; version="0.1-6"; sha256="0nbjakx0zx4fg09fv26pr9dlrbvb7ybi6swg84m2kwjky8399vvx"; depends=[]; }; + lsirm12pl = derive2 { name="lsirm12pl"; version="1.0.0"; sha256="0lsmp2nrzi2nqch0qhbgfm17a8ibkwpxving5pka4kzyrbc02qzh"; depends=[ggplot2 GPArotation MCMCpack Rcpp RcppArmadillo]; }; lsl = derive2 { name="lsl"; version="0.5.6"; sha256="1hwzklx1qp5ljc059j2hridg3caw4cgn7rbqs8xh2arzcvqdw3rb"; depends=[ggplot2 lavaan reshape2]; }; lslx = derive2 { name="lslx"; version="0.6.10"; sha256="189gpp1ikcp5ld4avipwckdz997v1cx2zas5a8b54nv246kb5hmd"; depends=[ggplot2 lavaan R6 Rcpp RcppEigen]; }; lsm = derive2 { name="lsm"; version="0.2.1.2"; sha256="1sp6c3r3g0q9lynzpcjvfwrp7xml11q66cqcisjvidm79vxjgi5v"; depends=[dplyr ggplot2]; }; @@ -12004,7 +12042,7 @@ in with self; { lss2 = derive2 { name="lss2"; version="1.1"; sha256="1rkv26zq36zyh891xkkllxphwplljmzpy15g619x1w4qvsajyyg8"; depends=[quantreg]; }; ltable = derive2 { name="ltable"; version="2.0.1"; sha256="15il58g7m09z0alln12xp1g6y3i8vaxggf229nbgb5gmcf4z97dx"; depends=[clipr Rcpp RcppGSL]; }; ltbayes = derive2 { name="ltbayes"; version="0.4"; sha256="0kv5k56hmc1m7bv5pmmmk46822szsgwqgpwydn0x56az7xn6hjk6"; depends=[mcmc MHadaptive numDeriv]; }; - ltm = derive2 { name="ltm"; version="1.1-1"; sha256="1qrgzwx5l58qf5rfp1knxc84r0g943q5sdr3ky74zzwpnmrf2vf7"; depends=[MASS msm polycor]; }; + ltm = derive2 { name="ltm"; version="1.2-0"; sha256="0vhgbk6j0z3limsrbjkjkpfn2whiaij5j4jf1gg66mjs9dlylap1"; depends=[MASS msm polycor]; }; ltmix = derive2 { name="ltmix"; version="0.2.1"; sha256="03i0gr79xiqnny57g0y9w5dfpw51gqhrkff2rh8rggsni20pzm1h"; depends=[gtools pracma]; }; ltmle = derive2 { name="ltmle"; version="1.2-0"; sha256="1mqrf77319cjs3q48iigrkjc3rjibz7qyij49a7l0nim3c1hd0b0"; depends=[Matrix matrixStats speedglm]; }; ltsa = derive2 { name="ltsa"; version="1.4.6"; sha256="10wmw9r00400ng2zlysd8jqgypjclshxj83x32002j2a9cz4f186"; depends=[]; }; @@ -12074,9 +12112,9 @@ in with self; { madsim = derive2 { name="madsim"; version="1.2.1"; sha256="11gfyimbz363p5xy1x6rsz5fcgzcr55myc5aaz5lazjkcnfn17aq"; depends=[]; }; magclass = derive2 { name="magclass"; version="6.0.9"; sha256="1a7qs93hww88skzcbrqlajhlxqp7x39bwclw4kd2af263iwjch4h"; depends=[abind data_table forcats maptools sp]; }; magi = derive2 { name="magi"; version="1.1.5"; sha256="0f322m2rrq1r8wnr9x86zs0kv2ca4wqf0a72saf37qg8r66gnf1b"; depends=[BH deSolve gridBase gridExtra Rcpp RcppArmadillo roptim]; }; - magic = derive2 { name="magic"; version="1.5-9"; sha256="0snmdh6vk0p6ar1swsihisinxrx7l8371dri5lk0z24ysgr5w7gs"; depends=[abind]; }; + magic = derive2 { name="magic"; version="1.6-0"; sha256="1gybia2aq80ldk1d845y5srncfzbbmpqhgl7vfaz7qqqjs6d85j5"; depends=[abind]; }; magicLamp = derive2 { name="magicLamp"; version="0.1.0"; sha256="1nfcnbqd6vawz8l3vgkbhmm462xdvaa4pn6axzmz8hl05xv2k3cv"; depends=[httr tibble]; }; - magicaxis = derive2 { name="magicaxis"; version="2.2.1"; sha256="1ba8psg3ja8b69s1afywsjz5sfljryhk5vvq1n4dzm1gsz6c772l"; depends=[celestial mapproj MASS plotrix RANN RColorBrewer sm]; }; + magicaxis = derive2 { name="magicaxis"; version="2.2.14"; sha256="1gqnivn6qjmf7axdi0pff6a40clklbipcr6qvm6ivzqbqhpbcb7v"; depends=[celestial mapproj MASS plotrix RANN sm]; }; magicfor = derive2 { name="magicfor"; version="0.1.0"; sha256="07l33fczr1x42sfxrsqq4q6r65sdflin6l8f5cgclnvx1858jdip"; depends=[]; }; magick = derive2 { name="magick"; version="2.7.3"; sha256="0h942bn7wfnzbbgq9hrs75c7igmg5r1c5sad2v0znhza4cp7p1w3"; depends=[curl magrittr Rcpp]; }; magickGUI = derive2 { name="magickGUI"; version="1.3.0"; sha256="114l5mga9x3vn9qqydyq1v75gqldh4p6m4i8ak0xw3v7p6wsf8gn"; depends=[magick]; }; @@ -12087,15 +12125,15 @@ in with self; { maicChecks = derive2 { name="maicChecks"; version="0.1.2"; sha256="1c2n8avrhx0lvw9hi5slymm49lzf37hbkqzkqy230aikgmpv0cpa"; depends=[data_table ggplot2 lpSolve quadprog tidyr]; }; mail = derive2 { name="mail"; version="1.0"; sha256="1m89cvw5ba4d87kp2dj3f8bvd6sgj9k56prqmw761q919xwprgw6"; depends=[]; }; mailR = derive2 { name="mailR"; version="0.8"; sha256="0p6vxzpyms1pxdb0j07izzxinw8xfmmbsj35nkypxyjv92qi802k"; depends=[assertthat R_utils rJava stringr]; }; - mailmerge = derive2 { name="mailmerge"; version="0.2.3"; sha256="0sc2201cvyis59lqs56x520q9hpp39hcm807diqr0wnip41h0f3i"; depends=[commonmark dplyr fs glue gmailr googledrive googlesheets4 lifecycle magrittr miniUI purrr rmarkdown rstudioapi shiny withr]; }; + mailmerge = derive2 { name="mailmerge"; version="0.2.4"; sha256="0rffvkh7v9r3pdbdclj5mx78dk5qszqpm8z7jp4x9h3jiyrh40gp"; depends=[commonmark fs glue gmailr googledrive lifecycle magrittr miniUI purrr rmarkdown rstudioapi shiny]; }; mailtoR = derive2 { name="mailtoR"; version="0.1.0"; sha256="0mnzblhy2vbxkf0k49bw1g08jw84s59zxbjrva2j2q347wzf4rgk"; depends=[glue htmltools]; }; majesticR = derive2 { name="majesticR"; version="0.1.1"; sha256="0x23p4js9cfnj8c33cp0fql5pvs4fn4frbbzpq85mxjhiifkxxpf"; depends=[jsonlite urltools]; }; makeFlow = derive2 { name="makeFlow"; version="1.0.2"; sha256="0r7a0klgx144rnks0fhjflnf8vfyyx2544n86nnxkp6cdvw0b4pw"; depends=[dplyr RColorBrewer]; }; makeProject = derive2 { name="makeProject"; version="1.0"; sha256="09q8xa5j4s5spgzzr3y06l3xis93lqxlx0q66s2nczrhd8nrz3ca"; depends=[]; }; makedummies = derive2 { name="makedummies"; version="1.2.1"; sha256="062rvijhy2dybpgxzp44cg46bfyb8lp9yasv3mhskhf3yg717sqp"; depends=[tibble]; }; - makemyprior = derive2 { name="makemyprior"; version="1.0.0"; sha256="0l4xpalw13x07fr1g9h6dfcmb16dk712pp70mnshqjhy1vlq2ajp"; depends=[ggplot2 knitr MASS Matrix rlang rmarkdown shiny shinyBS shinyjs testthat visNetwork]; }; + makemyprior = derive2 { name="makemyprior"; version="1.0.1"; sha256="0lal0nklw0f9340gdrl2icp9qvcnjasx07a04zr3iw2rgaq5r48c"; depends=[ggplot2 MASS Matrix rlang shiny shinyBS shinyjs visNetwork]; }; makepipe = derive2 { name="makepipe"; version="0.1.0"; sha256="087lp7s70nx1zfs3mw4jk43miw4sc0gfd5faxqpnkgbpx01iaa51"; depends=[cli R6 visNetwork]; }; - maketools = derive2 { name="maketools"; version="1.2.0"; sha256="1i2s48s0qfk9nwkkbx5hr0q7b0c8xziyrsg1klianmk9jqfngg36"; depends=[sys]; }; + maketools = derive2 { name="maketools"; version="1.2.2"; sha256="1p98vg5404np5fbiqajznmiqah8lyfv2xf741wjfm2jqkki9nk40"; depends=[sys]; }; malan = derive2 { name="malan"; version="1.0.2"; sha256="0qwf0r2gwpb93gzvyp8vaw7j6rhghr6nbrfp8xw876n5j5b9jhj3"; depends=[dplyr igraph magrittr Rcpp RcppArmadillo RcppProgress tibble tidygraph]; }; malani = derive2 { name="malani"; version="1.0"; sha256="1jps28gfkiysr356ackxf1my5xz6rpx3a2bv68pziy2614hrqbs9"; depends=[e1071]; }; malariaAtlas = derive2 { name="malariaAtlas"; version="1.0.1"; sha256="0k0406pn65ars4d6zlirfdd7z3rl2z82vsx5p97gmxnjjp6gjdpa"; depends=[curl dplyr ggplot2 gridExtra httr raster rgdal rlang sp stringi tidyr xml2]; }; @@ -12114,10 +12152,10 @@ in with self; { manymodelr = derive2 { name="manymodelr"; version="0.3.7"; sha256="0kc4y9i21qkcg0pkwlas2mm06s54s70w5ybw4215qjwiy6xax268"; depends=[caret dplyr e1071 ggplot2 lme4 Metrics]; }; maotai = derive2 { name="maotai"; version="0.2.4"; sha256="178gsci0sdlqzdi18cnc7qvs008w5db50hd9ayzlvabsc0dk19z2"; depends=[cluster dbscan fastcluster labdsv Matrix RANN Rcpp RcppArmadillo RcppDist Rdpack RSpectra Rtsne shapes]; }; mapReasy = derive2 { name="mapReasy"; version="1.0"; sha256="13va0z967ckwxnnianki5aj66km0x6r37nj4mz9qd3b0bps4g2kj"; depends=[Hmisc rgdal sp]; }; - mapSpain = derive2 { name="mapSpain"; version="0.5.0"; sha256="0xilniivfwh9k6yhpbfajxl54785kshm6xbyr40r6l833xw8ysnn"; depends=[countrycode giscoR rappdirs sf]; }; + mapSpain = derive2 { name="mapSpain"; version="0.6.1"; sha256="1zjg6g96fc76wkrawzan8gmhvy5n55zb9lgqv67jm8gxrzh8li69"; depends=[countrycode giscoR rappdirs sf]; }; mapStats = derive2 { name="mapStats"; version="2.4"; sha256="18pp1sb9p4p300ffvmzjrg5bv1i7f78mhpggq83myc26c3a593na"; depends=[classInt colorspace Hmisc lattice maptools RColorBrewer reshape2 sp survey]; }; mapaccuracy = derive2 { name="mapaccuracy"; version="0.1.0"; sha256="1rrnbmar8s48kww2x9qjlm68xs55mbc8cnms2crdsaah7787s6aa"; depends=[assertthat gtools reshape]; }; - mapbayr = derive2 { name="mapbayr"; version="0.5.0"; sha256="12k8n3fcm9km14ih4vspv4p314yqqim2v3hgcd4h98jwsp3ls6aq"; depends=[dplyr ggplot2 magrittr mrgsolve optimx purrr rlang stringr tibble tidyr]; }; + mapbayr = derive2 { name="mapbayr"; version="0.6.0"; sha256="06kczyij4y10xs0ydj85qhgxbgcw2dwa8gjc19di7cwjhbzp9si7"; depends=[dplyr ggplot2 magrittr mrgsolve optimx purrr rlang stringr tibble tidyr]; }; mapboxapi = derive2 { name="mapboxapi"; version="0.3.1"; sha256="1rqkzc3ggccvn9s1ib23yv3531j433z4xwl0alr8qk23pj3290ff"; depends=[aws_s3 curl dplyr geojsonsf httr jpeg jsonlite leaflet magick png protolite purrr raster rlang sf slippymath stringi tidyr units]; }; mapboxer = derive2 { name="mapboxer"; version="0.4.0"; sha256="0f873js87dgk8nqnhpxh88svvsbnk81vkm7gycb62mkr4xqsgqs7"; depends=[geojsonsf htmltools htmlwidgets magrittr purrr yaml]; }; mapcan = derive2 { name="mapcan"; version="0.0.1"; sha256="1a4135wc1h4nzcv6xq0bg75i744wyq8p7q0ix7y2x2gb6s35w46k"; depends=[dplyr ggplot2 magrittr]; }; @@ -12143,7 +12181,7 @@ in with self; { mapscanner = derive2 { name="mapscanner"; version="0.0.6"; sha256="017m33v2523rjmspfbzq1xnb3clzmbn4p1qqzp480j71wy5c1dry"; depends=[cli curl fs glue magick magrittr memoise pdftools png purrr raster Rcpp reproj RNiftyReg sf slippymath tibble]; }; mapsf = derive2 { name="mapsf"; version="0.4.0"; sha256="1h6szi33rbk279sh1ws4vhx6h7dl6zk5dpd7rjhay7811dq6q7wh"; depends=[classInt Rcpp sf]; }; maptiles = derive2 { name="maptiles"; version="0.3.0"; sha256="025n9fpl55n9wnslpjqr4z5y0q4mn68dplb3fm7wyn968kw7sbig"; depends=[curl png sf slippymath terra]; }; - maptools = derive2 { name="maptools"; version="1.1-2"; sha256="0fa4a43zax8gn3jdp4ngqav61x4g6l33bg9wzqbngkbjhipck59r"; depends=[foreign lattice sp]; }; + maptools = derive2 { name="maptools"; version="1.1-3"; sha256="0ixvh4qbdjjl19ghgbb2r26yksya977q1yzs4yn5wshwm0763xph"; depends=[foreign lattice sp]; }; maptpx = derive2 { name="maptpx"; version="1.9-7"; sha256="0f85i3vwr5rvz261z6j7x15gsahxrq4qqddfb0qyhypgihvwh857"; depends=[slam]; }; maptree = derive2 { name="maptree"; version="1.4-7"; sha256="1k7v84wvy6wz6g0dyiwvd3lvf78rlfidk60ll4fz7chvr2nrqdp4"; depends=[cluster rpart]; }; mapview = derive2 { name="mapview"; version="2.10.0"; sha256="1amscd7h5c26r8w6bp68a855vy7y8h84z7dvcc8vz6jbcln915xm"; depends=[base64enc htmltools htmlwidgets lattice leafem leaflet leafpop png raster satellite scales servr sf sp webshot]; }; @@ -12152,11 +12190,12 @@ in with self; { marcher = derive2 { name="marcher"; version="0.0-2"; sha256="0hcxbfrwniih4kvx5sxhlffz1pc87kf52v8hvaf193rhhdykis5q"; depends=[magrittr Matrix minpack_lm mvtnorm numDeriv plyr RColorBrewer scales zoo]; }; marelac = derive2 { name="marelac"; version="2.1.10"; sha256="08phsghzvi0z78pkb5lkamni83fsw0bqfri99j6bjf6y14aygif9"; depends=[seacarb shape]; }; marg = derive2 { name="marg"; version="1.2-2.1"; sha256="1r6rl7dhvm8dghm7pm4hfw3924qja65hczl6d47v9ixnv4rxyzr9"; depends=[statmod survival]; }; - marginaleffects = derive2 { name="marginaleffects"; version="0.3.3"; sha256="0ns77ffnai4dl9b3rwg95dxjv1ylpf84cq2hi8f5cr1xwpsx9bmm"; depends=[checkmate generics insight]; }; + margaret = derive2 { name="margaret"; version="0.1.1"; sha256="0qbbbc3ca8ps6b2k3i3rbhz5yr2szrwypqhrjqlhs893nybh3nlq"; depends=[devtools dplyr igraph lubridate purrr readr rlang rvest scholar SnowballC stringi stringr tibble tidyr tidytext tidyverse treemapify usethis widyr writexl]; }; + marginaleffects = derive2 { name="marginaleffects"; version="0.3.4"; sha256="0ph91ga6jfdsm480kcmyjlrxf44qxcaywq2fqdaw3md0m1hkkxrl"; depends=[checkmate generics insight]; }; marginalizedRisk = derive2 { name="marginalizedRisk"; version="2021.2-4"; sha256="0kagl9xghq9nsh9qvx165j1a5plh08zxhb6nm8j402mnl8pq7a4z"; depends=[]; }; margins = derive2 { name="margins"; version="0.3.26"; sha256="0sx5xjbzz1rjz8bklfna3171s53xsh123x4bh0kmwp006v8rv309"; depends=[data_table MASS prediction]; }; marima = derive2 { name="marima"; version="2.2"; sha256="03nvh93r4052li84yjqzc106gwh1542q9s192s980gs6sgy8scm6"; depends=[]; }; - mark = derive2 { name="mark"; version="0.4.1"; sha256="1lcax5bi00n7as4pm2149rjvymrlasf0837k0iyvb58k7nyhwv9x"; depends=[magrittr]; }; + mark = derive2 { name="mark"; version="0.5.0"; sha256="11w0lkc0nvm2rprkn0mwh5acdr6wf86ijhqzqjd6aw95ziqyrkgj"; depends=[magrittr]; }; markdown = derive2 { name="markdown"; version="1.1"; sha256="06zwbrp14bri3470anadd7dvgmw06xf8df6v2pk64wx3f9sd934d"; depends=[mime xfun]; }; markdownInput = derive2 { name="markdownInput"; version="0.1.2"; sha256="1qxil2liikbbn6w8niyc03fwqvwvdv6wiy98ip8j77729i7g2hln"; depends=[markdown shiny shinyAce]; }; marked = derive2 { name="marked"; version="1.2.6"; sha256="0k367sjyac1w894rndz5m0drmbd56nzyx5mr7mvhsqzq3gnv4dw5"; depends=[bookdown coda data_table expm kableExtra knitr lme4 Matrix numDeriv optimx R2admb Rcpp TMB truncnorm]; }; @@ -12168,7 +12207,7 @@ in with self; { markovchain = derive2 { name="markovchain"; version="0.8.6"; sha256="1al3b76qi6var3gpfqxy6kp0varyp7sbblrhm6hvzf8nwqvl3hq2"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; }; marl = derive2 { name="marl"; version="1.0"; sha256="0rndnf3rbcibv3gsrw1kfp5zhg37cw9wwlz0b7dbwprd0m71l3pm"; depends=[]; }; marmap = derive2 { name="marmap"; version="1.0.6"; sha256="16r7in3m63l7fdwxwfdphcd4fr073fb675zabjxphpxmclikyxdz"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; }; - marqLevAlg = derive2 { name="marqLevAlg"; version="2.0.5"; sha256="0cp3p9cgnb9hw08s8gjs7yj51d4fsa5zkkrikbgzkw0skj1gaa51"; depends=[doParallel foreach]; }; + marqLevAlg = derive2 { name="marqLevAlg"; version="2.0.6"; sha256="12jvrya818rdg6bn45v16hz78kxzzf53w914vdfqcd644438xad8"; depends=[doParallel foreach]; }; mase = derive2 { name="mase"; version="0.1.3"; sha256="10wyrvh3p344inx5qbzkwh4rr3lmpnh1ikhrghmlqr5607kiy3fm"; depends=[boot dplyr glmnet magrittr Rdpack rpms survey]; }; mashr = derive2 { name="mashr"; version="0.2.57"; sha256="1jjmqd3z3f7bxj6zw7yw6k9j6aiwnihd8cm14271kkpyy0id8slm"; depends=[abind ashr assertthat mvtnorm plyr Rcpp RcppArmadillo RcppGSL rmeta softImpute]; }; maskRangeR = derive2 { name="maskRangeR"; version="1.0"; sha256="12g9cx7l2bwl3wzka11p73r6w47h4nma3rdlhm9kq1a69ig5cm68"; depends=[dismo dplyr e1071 gdalUtils lubridate magrittr maptools raster rgdal sp tidyverse virtualspecies]; }; @@ -12177,8 +12216,7 @@ in with self; { mastif = derive2 { name="mastif"; version="1.0.1"; sha256="1jw7dz4qxyj848qm7lwg0klcw028260nizdi5gdwf7wd5a2nis9c"; depends=[corrplot RANN Rcpp RcppArmadillo repmis xtable]; }; matR = derive2 { name="matR"; version="0.9.1"; sha256="1qw2vqmpq7gc3dmr9r000ccjj7xa0h82waxnvryz3l17ggryyjjm"; depends=[BIOM_utils MGRASTer]; }; matahari = derive2 { name="matahari"; version="0.1.3"; sha256="03mhn4qh1vcz2hr0mxp6gijwgrzvbpfb8dq7lqhchbk5gq5g3fnh"; depends=[clipr jsonlite purrr readr rlang rstudioapi tibble]; }; - match2C = derive2 { name="match2C"; version="1.2.1"; sha256="0p4k69a7az6snjbi8skswzizvfah70ipqhxb0qn380y1vjnwd0jv"; depends=[ggplot2 mvnfast rcbalance Rcpp]; }; - matchMulti = derive2 { name="matchMulti"; version="1.1.7"; sha256="0k5psmjzcyr7pm603vni7w2hvslck05r81cngm26pql2prdrv5yk"; depends=[coin Hmisc MASS mvtnorm plyr rcbsubset weights]; }; + match2C = derive2 { name="match2C"; version="1.2.2"; sha256="0sacmxq9igvkn4qq1fzynbyiq13jj92k2gx42bbfnm4g8gjlhpch"; depends=[ggplot2 mvnfast rcbalance Rcpp]; }; matchbook = derive2 { name="matchbook"; version="1.0.7"; sha256="0xfqg8z2zkn215kqmjjkqdwrgsk7cn4jdpxfgd6razhcbvflg48j"; depends=[]; }; matchingMarkets = derive2 { name="matchingMarkets"; version="1.0-2"; sha256="1jj5hzxiivqinkpddmkqdxgi83jm6blann9wgv4g8prn3lvp0i85"; depends=[lattice lpSolve partitions Rcpp RcppArmadillo RcppProgress rJava]; }; matchingR = derive2 { name="matchingR"; version="1.3.3"; sha256="1wr1faaixn5scx2c8g2jfvfm489k0ah9isza67gz0db8knja9nig"; depends=[Rcpp RcppArmadillo]; }; @@ -12186,7 +12224,7 @@ in with self; { matchr = derive2 { name="matchr"; version="0.1.0"; sha256="01nvas5ngkhzhr98n1786zsih2n2lbxx3ajwaqfd96ai0yqw2jnh"; depends=[rlang]; }; matconv = derive2 { name="matconv"; version="0.4.2"; sha256="1iyy344p3fsfx3gw9kzr0x9zhsplba22fpzl1mhk10wvf99xiwb3"; depends=[]; }; materialmodifier = derive2 { name="materialmodifier"; version="1.1.0"; sha256="116d8pppibi4kfd4jx4pc80n036lj86fprjnakkv4m890nkbznjr"; depends=[downloader imager jpeg magrittr moments png readbitmap stringr]; }; - mathjaxr = derive2 { name="mathjaxr"; version="1.4-0"; sha256="0rywdm4ki569hzmpwnzhr3h6slkkakf4l19rb2fa74ym6s13fmxs"; depends=[]; }; + mathjaxr = derive2 { name="mathjaxr"; version="1.6-0"; sha256="0yf1sfkb2kjsplipl2v4k2gp20li9xzsynclg228sy0v243pdi7c"; depends=[]; }; mathpix = derive2 { name="mathpix"; version="0.4.0"; sha256="0wwagf8v7awgiyi8vrfay5m2pbl1czn62g5bkg037wwy0c68n8va"; depends=[base64enc httr magick purrr rstudioapi texPreview]; }; matie = derive2 { name="matie"; version="1.2"; sha256="1ymx49cyvz63imqw5n48grilphiqvvdirwsrv82p7jgxdyav2xv0"; depends=[cba dfoptim gplots igraph mvtnorm seriation]; }; matlab = derive2 { name="matlab"; version="1.0.2"; sha256="0m21k2vzbc5d3c93p2hk4208xyd2av2slg55q5j1ibjidiryqgd2"; depends=[]; }; @@ -12222,7 +12260,7 @@ in with self; { maxnet = derive2 { name="maxnet"; version="0.1.4"; sha256="05l24dksdgb43dpi4py4qkh8j9ynrnsglydy3gph1b61ygnfa8gx"; depends=[glmnet]; }; maxnodf = derive2 { name="maxnodf"; version="1.0.0"; sha256="1czhy3177bb4a5rxi2s4j3c9xn9f0b2pbkdka1dzw6ga389wdwb3"; depends=[Rcpp]; }; maxstat = derive2 { name="maxstat"; version="0.7-25"; sha256="114z1rwxwvk05ijjhdppzm148n1h192fp0w12ky10zkrhf6kphbg"; depends=[exactRankTests mvtnorm]; }; - maybe = derive2 { name="maybe"; version="0.1.0"; sha256="1n77n2l9xf4625y8il936dwfpmkq95pfbrs8cgd713il4dq1jy0d"; depends=[]; }; + maybe = derive2 { name="maybe"; version="0.2.0"; sha256="1nr7ivz9d5rpkxha89na8wgy7ds2v1n3pmjzxq5qdpfjfaphp84z"; depends=[]; }; mazeGen = derive2 { name="mazeGen"; version="0.1.3"; sha256="192xygg3l4rpqp49sgd5hpp4h3f8wjhyldn0l8abxhsks7jd2kfb"; depends=[igraph]; }; mazealls = derive2 { name="mazealls"; version="0.2.0"; sha256="14j6syw1zkgs4cnmxzqpm6klmgvck2gg97wkzmy9al6n0biy8gmb"; depends=[TurtleGraphics]; }; mazeinda = derive2 { name="mazeinda"; version="0.0.1"; sha256="0ns4ib73y4fghf7p1wg0a05js4mqr66dpp49p1h039pqrb0f1vwd"; depends=[foreach]; }; @@ -12279,12 +12317,11 @@ in with self; { mcmcse = derive2 { name="mcmcse"; version="1.5-0"; sha256="0qvlkv7j35h2lxdzhbsbsrf1cgsbgf4in7lxgwmx7vs85k10v0ja"; depends=[ellipse fftwtools Rcpp RcppArmadillo testthat]; }; mco = derive2 { name="mco"; version="1.15.6"; sha256="10h5d2lw6ybyva44nn5wml6v3ljpnv9m1b2lh36vg2cwrdwy5sqp"; depends=[]; }; mcompanion = derive2 { name="mcompanion"; version="0.5-3"; sha256="0051agyzbhrsxi9wpfpqcq98h7y25627s2czf30qxcq80m7xbhj0"; depends=[gbutils MASS Matrix Rdpack]; }; - mcp = derive2 { name="mcp"; version="0.3.1"; sha256="07acx5mvp4znibjyacyjrnb4f5glq1xh4qhzysvkqj4vl1wai6vl"; depends=[bayesplot coda dplyr future future_apply ggplot2 loo magrittr patchwork rjags rlang stringr tibble tidybayes tidyr tidyselect]; }; + mcp = derive2 { name="mcp"; version="0.3.2"; sha256="0vqn0lb7nc5hp2ls2h17ybldxrqj6l1hd4pk5pr4d22yyidlvx96"; depends=[bayesplot coda dplyr future future_apply ggplot2 loo magrittr patchwork rjags rlang stringr tibble tidybayes tidyr tidyselect]; }; mcparallelDo = derive2 { name="mcparallelDo"; version="1.1.0"; sha256="1ivh0d4f7ks6xwcjywk62h1zhr7h5bbhzpisky7973wi4g8vipbn"; depends=[checkmate R_utils R6]; }; mcprofile = derive2 { name="mcprofile"; version="1.0-1"; sha256="118n3pxzjm4j9y09d1n2hw7pm0b8b0m8mnm5v9kq76vignklh75l"; depends=[ggplot2 mvtnorm quadprog]; }; mcr = derive2 { name="mcr"; version="1.2.2"; sha256="0n1wd8z7j9s20ym8m6vbpixibmfb3qkykb3z92jv3pbamjf2sxsc"; depends=[]; }; mcreplicate = derive2 { name="mcreplicate"; version="0.1.2"; sha256="12pmfp75sc00cdrkx4xniq74qqx3y67qxwdrrbp2mf562pdn2gmn"; depends=[]; }; - mcsm = derive2 { name="mcsm"; version="1.0"; sha256="13sx7s3ywis5n4a70ld2szld9fb8jkfsc82dy6iskhy17vy8pml0"; depends=[coda MASS]; }; mctest = derive2 { name="mctest"; version="1.3.1"; sha256="1d248r9ifwl1xhvka6z69l943rvbq7s7ag6vqp9lljkcybvg75f2"; depends=[]; }; mctq = derive2 { name="mctq"; version="0.1.0"; sha256="1j4f5jfwq827x0dd19xfwjrxf1rclr5813l2rcirxifsncs5hbnc"; depends=[checkmate cli dplyr hms lifecycle lubridate]; }; mcunit = derive2 { name="mcunit"; version="0.3.2"; sha256="16nnm50g87iaf058b1w5w5hphx99xplczndcbv1356f2gs2gfy6l"; depends=[Rdpack rlang simctest testthat]; }; @@ -12296,7 +12333,7 @@ in with self; { mdapack = derive2 { name="mdapack"; version="0.0.2"; sha256="1dfcjh8yax06m890ql0kc2rn539z4xbhw7bq9a8cbrm7jnkq03iq"; depends=[covr curl devtools FactoMineR ggplot2 gh git2r httr knitr mice openssl pkgbuild reshape2 rlang rmarkdown roxygen2 spelling testthat VIM]; }; mdatools = derive2 { name="mdatools"; version="0.12.0"; sha256="11dav3ljfff945lr1ldbn9g7grjnny5dmk0w723lrk63cx6jd5f0"; depends=[Matrix]; }; mdbr = derive2 { name="mdbr"; version="0.1.2"; sha256="1c33v2dqz1jjh730p486bi07h9m9clpcfrbvhbvwb8fslqxg76qd"; depends=[readr]; }; - mde = derive2 { name="mde"; version="0.3.1"; sha256="07idj8yp5adw2qx8nvq0zyg83db6mgp2ndb33grkkzy75vyhgs50"; depends=[dplyr tidyr]; }; + mde = derive2 { name="mde"; version="0.3.2"; sha256="121bzypndsx4abls1f7rjrvg98rqkb155vd5aiql8vi1lwgzy9jl"; depends=[dplyr tidyr]; }; mded = derive2 { name="mded"; version="0.1-2"; sha256="1j8fcz5yc70p9qd9l010xj1b625scdps8z1pqh75b45p2hiqbhlc"; depends=[]; }; mdendro = derive2 { name="mdendro"; version="2.1.0"; sha256="1hpm7aqfg340nrrn8m962kwaw67myvcrkv9yihdrxh5gmcjdbhxf"; depends=[Rcpp]; }; mdftracks = derive2 { name="mdftracks"; version="0.2.1"; sha256="0j1j3dbl5g8zv59ppyvnxp39vpd24ygxbdhnavjwnw1v1fpippbf"; depends=[]; }; @@ -12312,9 +12349,8 @@ in with self; { mdsr = derive2 { name="mdsr"; version="0.2.5"; sha256="0mw6kpd2p0yqkjjl1jy6bhc8dy2skxiq0k204y8kzr0l9rqk76zs"; depends=[babynames DBI dbplyr downloader dplyr fs ggplot2 htmlwidgets kableExtra RMySQL skimr stringr tibble webshot]; }; mdthemes = derive2 { name="mdthemes"; version="0.1.0"; sha256="1k0fylg8jz0xdfwq85wap6lgrb9zi219vhmry4lysqssx2szkngk"; depends=[cowplot ggplot2 ggtext ggthemes hrbrthemes tvthemes]; }; mdw = derive2 { name="mdw"; version="2020.6-17"; sha256="0jjajgb1w3vx7vqn2z90xq39hvbcrrd2ky8p31g5absqwwm7lwpa"; depends=[kyotil MASS Matrix]; }; - meaRtools = derive2 { name="meaRtools"; version="1.0.4"; sha256="1nxyvdq4670696mhg0svxxlvk9hnr8szai8b18pw6754kmw1bjvn"; depends=[emdist ggplot2 gridExtra gtools lattice plyr Rcpp reshape2]; }; meanShiftR = derive2 { name="meanShiftR"; version="0.56"; sha256="1bn75r5mf3pr1mr8384w175yabw75cynxlz2xh1gl2nar86k4m0x"; depends=[]; }; - meanr = derive2 { name="meanr"; version="0.1-3"; sha256="1b2xj62qz9919qgy62qn7k4cfxaizfb79rzbca5ksyb2fh8qwh5s"; depends=[]; }; + meanr = derive2 { name="meanr"; version="0.1-4"; sha256="1k5ygyxa5ixynvh1nfkgm4x9w0wk637m1jnrvkjhyq3jaqwwi859"; depends=[]; }; meantables = derive2 { name="meantables"; version="0.1.0"; sha256="1007w4vjb472v15ny1h8dxdzxhddk4z5s5n77ayvcbwpc8nlzmk7"; depends=[dplyr rlang tibble]; }; measuRing = derive2 { name="measuRing"; version="0.5"; sha256="0yblqkv5444y75jkb6d0zs728i6vybm294h7b5622pwfjqlfhnh2"; depends=[dplR pastecs png tiff]; }; measurementProtocol = derive2 { name="measurementProtocol"; version="0.1.0"; sha256="0vyfkrlinwq2930xqwp1hb8g7g3q7h7yg6y0c8gkwgscrxswifhg"; depends=[assertthat cli httr jsonlite rappdirs]; }; @@ -12343,14 +12379,14 @@ in with self; { mefa4 = derive2 { name="mefa4"; version="0.3-8"; sha256="09y8mhmcd82gz582lskvy0yx6vh6jjyxmh7i35041knqcjyp6lpc"; depends=[Matrix]; }; meifly = derive2 { name="meifly"; version="0.3"; sha256="1x3lhy7fmasss0rq60z5qp74ni32sahw62s8cnp2j431sp95pczc"; depends=[leaps MASS plyr]; }; mekko = derive2 { name="mekko"; version="0.1.0"; sha256="09y50k4r4mnx351a5zhkqg9s2xyl3d149dhmfy2z6hzm5yg2ajyi"; depends=[ggplot2]; }; - melt = derive2 { name="melt"; version="1.2.0"; sha256="0l1437q32kv5zg9555xnm6zrc2a0pm43blgmy5sb3w86zxmg8441"; depends=[Rcpp RcppEigen RcppProgress]; }; + melt = derive2 { name="melt"; version="1.3.0"; sha256="1fxzffz1rwlmp58i4a00707flnzch1kyhm9izvsqykwqx4rqdbca"; depends=[Rcpp RcppEigen RcppProgress]; }; meltr = derive2 { name="meltr"; version="1.0.0"; sha256="0pcpgwk7if9f441z0vwh9g0ydhzkv3h4db433snkk5g4rfikx3ad"; depends=[cli cpp11 R6 rlang tibble]; }; - meltt = derive2 { name="meltt"; version="0.4.1"; sha256="1113rdw0jglwkcd3g31llhgzqmwpxfz2bp60m3x2zdbdrvwc1z9n"; depends=[dplyr ggplot2 leaflet plyr Rcpp RcppArmadillo reticulate shiny shinyjs tibble tidyr]; }; + meltt = derive2 { name="meltt"; version="0.4.2"; sha256="0pj4z5nlb3ngx50r25d80z275rcf571imapq83yg0djp5lwzml0c"; depends=[dplyr ggplot2 leaflet plyr Rcpp RcppArmadillo reticulate shiny shinyjs tibble tidyr]; }; mem = derive2 { name="mem"; version="2.16"; sha256="16xm9hai1aqhrbpxln6az4qbwz3kk2izmq39nzpzjc3ardpq1ljr"; depends=[boot dplyr EnvStats ggplot2 mclust purrr RColorBrewer RcppRoll sm tidyr]; }; memapp = derive2 { name="memapp"; version="2.14"; sha256="0w2lbypz0bc50s6yrvidz96wpz53cxpk5a9yhbq7rp8chr9r8cm3"; depends=[dplyr DT foreign formattable ggplot2 haven mem openxlsx plotly RColorBrewer readxl RODBC shiny shinyBS shinydashboard shinyjs shinythemes shinyWidgets stringi stringr tidyr]; }; meme = derive2 { name="meme"; version="0.2.3"; sha256="009gkl9zmj2s6wmd7rl0khf04m05zcbbjjds2w7krnbr8h0dqpqm"; depends=[ggplot2 gridGraphics magick showtext sysfonts]; }; memery = derive2 { name="memery"; version="0.5.6"; sha256="0rlq0pjl13wsc025z3ycd5m48lnlagw61fbn51x9npysrmii4rvh"; depends=[Cairo colourpicker cowplot ggplot2 jpeg magrittr png purrr shiny shinyBS shinycssloaders showtext sysfonts]; }; - memgene = derive2 { name="memgene"; version="1.0.1"; sha256="1x3vf2f1yh40xw5vqcjlrn07zn9zh3sx4kc9dijxzygd9crl5a29"; depends=[ade4 gdistance raster vegan]; }; + memgene = derive2 { name="memgene"; version="1.0.2"; sha256="1f1v651vab4b3bfxn8wp5p848h6vy7ylr52zirwhnhxj37fzhkq6"; depends=[ade4 gdistance raster sp vegan]; }; memify = derive2 { name="memify"; version="0.1.1"; sha256="1dnbaz57v50mg2kxn5y7cdfrsv1h046cwqh48mpabgh6vf018w4y"; depends=[]; }; memisc = derive2 { name="memisc"; version="0.99.30.7"; sha256="0j1y4dv38irz3117inz2d298rbi3lj2r68acaynfj6lj21nx292k"; depends=[data_table lattice MASS repr]; }; memo = derive2 { name="memo"; version="1.0.1"; sha256="14nvqi1qsin45ksd0wp9cigjk1gghr4jijdqkaqh177dwa244r9j"; depends=[digest]; }; @@ -12369,9 +12405,8 @@ in with self; { merror = derive2 { name="merror"; version="2.0.2"; sha256="13d9r5r83zai8jnzxaz1ak40876aw20zbpr244gs55rvj5j7f87q"; depends=[]; }; meshed = derive2 { name="meshed"; version="0.2.1"; sha256="1n19d1isy0x8yramkvj1ckk3s92qagppm2rngxsz2kj6ir2nyyb9"; depends=[dplyr glue magrittr Rcpp RcppArmadillo rlang]; }; messaging = derive2 { name="messaging"; version="0.1.0"; sha256="0q19cqp1zgh0yhk1ql0jqf414bhx6jwhkairq6wx2cmkli2g7k1y"; depends=[dplyr glue magrittr rlang stringr]; }; - messydates = derive2 { name="messydates"; version="0.2.0"; sha256="193rc2723i6a75g8qmrf743h89nsxm9j1dlvxncsxk1jpj5hzd43"; depends=[dplyr lubridate purrr stringr tibble]; }; - met = derive2 { name="met"; version="0.1.0"; sha256="0714103xzc4n178307czxmcv7ygjiigjr9b6xnj240ljp7qmln19"; depends=[DiPs]; }; - metR = derive2 { name="metR"; version="0.11.0"; sha256="09ar9lckrzbvcy0jgnwlrnj96ln426yh70dgjfmlac68bhinv2fw"; depends=[checkmate data_table digest fields Formula formula_tools ggplot2 gtable isoband lubridate memoise plyr purrr RCurl scales sp stringr]; }; + messydates = derive2 { name="messydates"; version="0.2.1"; sha256="0nqllz9rkfhwg1c6fhi1l7wib7sn96274d7p4z2p9l6h5vw8b4dg"; depends=[dplyr lubridate purrr stringr tibble]; }; + metR = derive2 { name="metR"; version="0.12.0"; sha256="0zz45zxzkfx5bgvwrrpbsndd01qncsvfw2pbi5kivic309r89c4s"; depends=[checkmate data_table digest fields Formula formula_tools ggplot2 gtable isoband lubridate memoise plyr purrr RCurl scales sp stringr]; }; metRology = derive2 { name="metRology"; version="0.9-28-1"; sha256="1syjwblyd18myxrs0hx4m91fgb6zs3r4g7w701j2f2pw6j9mvz0y"; depends=[MASS numDeriv robustbase]; }; metScanR = derive2 { name="metScanR"; version="1.2.3"; sha256="1v7zrxj3wspx6f5n5s75skcygbf3r85rn4p0z9iwbrbrgxwi4qgs"; depends=[geosphere leaflet matlab plyr RCurl]; }; meta = derive2 { name="meta"; version="5.2-0"; sha256="0x3v6xxlxrmyv1cpyjr83n39v29439qpzd9v2avyirbk58v85qyb"; depends=[CompQuadForm lme4 metafor xml2]; }; @@ -12390,13 +12425,15 @@ in with self; { metaSDTreg = derive2 { name="metaSDTreg"; version="0.2.1"; sha256="0nqnb0isjz2czvih6zr4jglrwfmf9ahm9a3nwkvr2cwbmdh5clq2"; depends=[Matrix maxLik ordinal truncnorm]; }; metaSEM = derive2 { name="metaSEM"; version="1.2.5.1"; sha256="027qwbnn63c09ac560gr99fxv4ccfzd1drdcp2r610y5z9079i7i"; depends=[ellipse lavaan MASS Matrix mvtnorm numDeriv OpenMx]; }; metaSurvival = derive2 { name="metaSurvival"; version="0.1.0"; sha256="05f103fi287y64gys73a55snw54bnph69q8dykfii10dykd44g0y"; depends=[mvtnorm survival]; }; - metaboData = derive2 { name="metaboData"; version="0.6.2"; sha256="1iiy9ipyp3h1rvcbjld6bdy1jgnxbixvgs5xqwly1yj4mvri0bsg"; depends=[dplyr fs magrittr piggyback purrr readr rlang stringr tibble yaml]; }; + metaboData = derive2 { name="metaboData"; version="0.6.3"; sha256="0a8jz7q0a5dri5p2qyw0ah0j4w0xjyfj6gkh2gcsazac1d5fl02i"; depends=[dplyr fs magrittr piggyback purrr readr rlang stringr tibble yaml]; }; metabolic = derive2 { name="metabolic"; version="0.1.0"; sha256="1bk8d0sxlgc17d7x02zmx23fdqz39c9zpin16bzhcj602kjcq0y8"; depends=[cli dplyr forcats ggfittext ggimage ggplot2 glue magrittr meta patchwork purrr rmarkdown scales stringr tibble tidyr usethis]; }; + metabolighteR = derive2 { name="metabolighteR"; version="0.1.3"; sha256="0ip7cy40jndcwp8yc42pjzklv35dkxjd3pdlpwk0r0jngp7nbjim"; depends=[crayon dplyr httr magrittr purrr]; }; metacart = derive2 { name="metacart"; version="2.0-3"; sha256="1wim72fvhx6cyc16c9gl8cwzbhlpzilk7q8gi4jnzzazqmc1kb5n"; depends=[ggplot2 gridExtra Rcpp rpart]; }; metacoder = derive2 { name="metacoder"; version="0.3.5"; sha256="0d0ihglsal9cx03jjq472x2xlqdflgxhzkr0vwvjpq0rqvq5syva"; depends=[ape cowplot crayon dplyr GA ggfittext ggplot2 igraph lazyeval magrittr R6 Rcpp RCurl readr rlang seqinr stringr taxize tibble vegan]; }; metacom = derive2 { name="metacom"; version="1.5.3"; sha256="0c0gzn28cl2sl52wx2n36jm9c18d9s3yqjyx88kgbmd9069z1nvk"; depends=[vegan]; }; metaconfoundr = derive2 { name="metaconfoundr"; version="0.1.0"; sha256="13b0xbfm90g14grvpffnj7xhkgymzcayq1hh2vi0q1ah8bl8z504"; depends=[dplyr ellipsis forcats ggplot2 glue magrittr purrr rlang shiny stringr tibble tidyr tidyselect]; }; metacor = derive2 { name="metacor"; version="1.0-2.1"; sha256="0y3z7jbhw5c2dbn9fx9wlw1311irjc2xvnm5hnaixbbj53qz24n0"; depends=[gsl rmeta]; }; + metacore = derive2 { name="metacore"; version="0.0.3"; sha256="19q88g9vcqwp5p42x6agsxhwmvlqgprdq3ydqvv9c41yp03bqypq"; depends=[dplyr magrittr purrr R6 readxl rlang stringr tibble tidyr tidyselect XML]; }; metadat = derive2 { name="metadat"; version="1.0-0"; sha256="172bvdkmjvxx5cylb4wxbrhnmlzrc3ipfq7343ggypqln975lczd"; depends=[mathjaxr]; }; metadynminer = derive2 { name="metadynminer"; version="0.1.6"; sha256="0zg08lwnimnmfwac0d5kg8yhsl88gmn029dra18phy1jzkfnsx34"; depends=[Rcpp]; }; metadynminer3d = derive2 { name="metadynminer3d"; version="0.0.1"; sha256="0riqr2hhk4h0rm7m4njb2dd2f24jff7lzf9chh83sq4q3wldgpz5"; depends=[metadynminer misc3d Rcpp rgl]; }; @@ -12415,7 +12452,7 @@ in with self; { metamisc = derive2 { name="metamisc"; version="0.2.5"; sha256="1fg6k2sr74iprjx2bwqqfnp67c493fkilncy2nbynv4sqmbl8s0i"; depends=[dplyr ggplot2 lme4 metafor mvtnorm plyr pROC]; }; metan = derive2 { name="metan"; version="1.16.0"; sha256="09qa46069xb7vrmp8r0nq84fvwzzx5bqav3x3cfc2shxm6dxmf0g"; depends=[dplyr GGally ggforce ggplot2 ggrepel lme4 lmerTest magrittr mathjaxr patchwork purrr rlang tibble tidyr tidyselect]; }; metansue = derive2 { name="metansue"; version="2.4"; sha256="1ja7a3z4d764a1rcf256kmzf8xc6d8x7mqq12vzznw5ks8r2p9hk"; depends=[]; }; - metap = derive2 { name="metap"; version="1.7"; sha256="0hlcyl8lgcnihzc7xfsm1wmq2kksaz2n342l512dwdqfgmh13dfr"; depends=[lattice mathjaxr mutoss Rdpack TFisher]; }; + metap = derive2 { name="metap"; version="1.8"; sha256="0asmypxfxly4xmcjf3yzid5zqlzg88z0brij2splfk4avsl035gf"; depends=[lattice mathjaxr mutoss qqconf Rdpack TFisher]; }; metapack = derive2 { name="metapack"; version="0.1.5"; sha256="112mhfg01hci09qj9l2l3xww3za20kd1z6jshj4893mlqpmvl177"; depends=[BH Formula ggplot2 gridExtra Rcpp RcppArmadillo RcppProgress]; }; metaplot = derive2 { name="metaplot"; version="0.8.3"; sha256="1zw8bq2fy9m15dfc92ag0dz2k9dqrf5jbvfaycizcgsgaqd79s1c"; depends=[dplyr encode ggplot2 gridExtra gtable lattice magrittr rlang scales tidyr]; }; metaplotr = derive2 { name="metaplotr"; version="0.0.3"; sha256="01iala6cxsxv30fnlh80md5mpy3ksd2piw90zcls8f68g1c6v1jy"; depends=[ggplot2 gridExtra]; }; @@ -12460,8 +12497,9 @@ in with self; { mgarchBEKK = derive2 { name="mgarchBEKK"; version="0.0.2"; sha256="1k4c34srnckbh5kchzmm44l91ma9sw0gi4y225igs3cl79212q9c"; depends=[mvtnorm tseries]; }; mgc = derive2 { name="mgc"; version="2.0.2"; sha256="1l9qs4nz1rn56qp569nh26yz3c7i4zh3r43c209zh7kvizpagx0i"; depends=[abind boot energy MASS raster]; }; mgcViz = derive2 { name="mgcViz"; version="0.1.9"; sha256="09n18ypjdwcca38i2v636ijgnzwalv7wh55z82a0pfrbzabiynn1"; depends=[gamm4 GGally ggplot2 gridExtra KernSmooth matrixStats mgcv miniUI plyr qgam shiny viridis]; }; - mgcv = derive2 { name="mgcv"; version="1.8-38"; sha256="1fyx8b0xjyx75mp90v314gayzydkca5y90p76jnwxzfnhxbys4nd"; depends=[Matrix nlme]; }; + mgcv = derive2 { name="mgcv"; version="1.8-39"; sha256="15h1k9qyn8s8xy4x2361mj42vdq8ml5xskzqpkc45zj1a3gss6w4"; depends=[Matrix nlme]; }; mgee2 = derive2 { name="mgee2"; version="0.2"; sha256="1bhjajcjvm8brc92v6ij378i0d3vniip77m4pz7n02sgswj0w61a"; depends=[ggplot2 MASS]; }; + mglasso = derive2 { name="mglasso"; version="0.1.1"; sha256="0h5npy9innq8dxyp1aq0agffrp29zrzfrcs8bzy43a60bhsil55l"; depends=[corpcor gridExtra Matrix R_utils reticulate]; }; mglmn = derive2 { name="mglmn"; version="0.1.0"; sha256="1g642hhs28q6x34xgrfrmmsb2jsn9zy4jxad0x5ai3px48zzdb4r"; depends=[mvabund snowfall]; }; mgm = derive2 { name="mgm"; version="1.2-12"; sha256="0p5l1mcgz47rri800i78q7f89s2ll5w5kqmj1lkd4i93fj4bh585"; depends=[glmnet gtools Hmisc qgraph stringr]; }; mgpd = derive2 { name="mgpd"; version="1.99"; sha256="0cxpgza9i0hjm5w1i5crzlgh740v143120zwjn95cav8pk8n2wyb"; depends=[corpcor evd fields numDeriv]; }; @@ -12519,7 +12557,7 @@ in with self; { microsynth = derive2 { name="microsynth"; version="2.0.31"; sha256="0wmrp9igylzp4qbvdr13r2rxfkcq9xwg8gw29j1g6kcqyq4aflds"; depends=[boot kernlab LowRankQP nleqslv pracma survey]; }; midas = derive2 { name="midas"; version="1.0.1"; sha256="1alqxk23651jnkg0xn4rpvk71z5rhvx3y0wjrgkw2qw95s7jjn72"; depends=[shiny xml2]; }; midas2 = derive2 { name="midas2"; version="0.1.0"; sha256="0k670ppbw12s4wgliiqgc5fr0sajr5axlkwa5i54hrappkh1vlb4"; depends=[coda MCMCpack R2jags]; }; - midasml = derive2 { name="midasml"; version="0.1.9"; sha256="0mvs472ml80ka6nz4p6mbp0igrn73gn43qqvbx691d5xq3dv04nd"; depends=[doParallel doRNG foreach lubridate Matrix mcGlobaloptim]; }; + midasml = derive2 { name="midasml"; version="0.1.9-1"; sha256="15r6sdq788x3gj8n8b2ykhrp8habx8rjhsiy3phlp98vm7m58b2z"; depends=[doParallel doRNG foreach lubridate Matrix mcGlobaloptim]; }; midasr = derive2 { name="midasr"; version="0.8"; sha256="0mzyxf8q2wmbsiczkhhgigy7jmi8zr4w4a83f97va35vfhxi217k"; depends=[forecast Formula MASS Matrix numDeriv optimx quantreg sandwich texreg zoo]; }; midastouch = derive2 { name="midastouch"; version="1.3"; sha256="1pjzcf0hjfhr5p0la8pz1njw7bhfrcrzpqfsdqk2z5c6dbh4awzq"; depends=[]; }; midrangeMCP = derive2 { name="midrangeMCP"; version="3.1.1"; sha256="1yfwyglyxxk4i914m8n148cjydlcg7r16zl8acb1w8h963svirk9"; depends=[SMR writexl xtable]; }; @@ -12538,18 +12576,18 @@ in with self; { mimsy = derive2 { name="mimsy"; version="0.6.2"; sha256="01dy1fryrgq07jdfnxcnks97h0gq632dvqk7hnfs0f5fnx0k0vvf"; depends=[dplyr lubridate magrittr openxlsx]; }; minMSE = derive2 { name="minMSE"; version="0.5.1"; sha256="1fj6njqdc6zn73n2q60x01znwn6xlprjldwy5c13d8rd1n5shccm"; depends=[MASS Rcpp]; }; minSNPs = derive2 { name="minSNPs"; version="0.0.1"; sha256="0kj3kalr11c4jab9b5w0i2w2z0dsdmm22szgfzyrc3y2w6jdhvjw"; depends=[BiocParallel]; }; - mind = derive2 { name="mind"; version="0.1.4"; sha256="0zalbxd4mbi5snidz60pdnm1bkgbp5pabwc4p3qfvix6ll863kmc"; depends=[data_table dplyr JWileymisc MASS Matrix qdap]; }; + mind = derive2 { name="mind"; version="0.1.5"; sha256="104cya2g0fw4cg1ihmznhhwwrbmwbbck9zfwgr5snmmhs4q244dy"; depends=[data_table dplyr JWileymisc MASS Matrix qdap tm]; }; mindr = derive2 { name="mindr"; version="1.3.2"; sha256="0nv3wripimpbi8zf1h8fkj80ibrzava36kcai9f1gl8frincafr9"; depends=[htmlwidgets knitr]; }; mineCitrus = derive2 { name="mineCitrus"; version="1.0.0"; sha256="031nfhrsc5rlqls3vyrk18lx0pd4ssdk96cmfr4ifaciz0rgv8h2"; depends=[ggplot2]; }; minerva = derive2 { name="minerva"; version="1.5.10"; sha256="03srkii3rmx40lyr050bnrxil6w0hfv5pr64k339m66ciwyka9ig"; depends=[Rcpp RcppArmadillo]; }; - miniCRAN = derive2 { name="miniCRAN"; version="0.2.14"; sha256="1i1rf97m7c8x65rfy8c26l0kbl4zq7ha1f9yi413fk9jlngxajj3"; depends=[assertthat httr igraph]; }; + miniCRAN = derive2 { name="miniCRAN"; version="0.2.16"; sha256="1rr5wrh27055ikkvpsf19q9bkfhckafgmrn174iwzjh9s42w3nbq"; depends=[assertthat httr igraph]; }; miniGUI = derive2 { name="miniGUI"; version="0.8-1"; sha256="0qb2fbkjwzn909yrk89d4951bwf8n05i0s265l8v2d4lpns9hc2i"; depends=[]; }; miniMeta = derive2 { name="miniMeta"; version="0.2"; sha256="03r6xwcgchw42irqr8jy5hsbv8brk6f77h4zi9qhhz3zmkryjbw2"; depends=[colourpicker jsonlite markdown meta metafor readxl rhandsontable shiny shinyjs shinyWidgets WriteXLS]; }; miniUI = derive2 { name="miniUI"; version="0.1.1.1"; sha256="1h5h2sc57h95d6bsgs95l26911g38hvjc1v50bc31xl9689l2as5"; depends=[htmltools shiny]; }; - minidown = derive2 { name="minidown"; version="0.3.0"; sha256="1x0xsag8lbghnbgjlwd73m24cpvil75056pl3j2fhhsydbikhifw"; depends=[htmltools knitr mime rmarkdown xfun]; }; + minidown = derive2 { name="minidown"; version="0.4.0"; sha256="0h4szlw0dgxbdsw8grnzv50bq0qzzk3lm8zr1zp2pybisfvqaqkr"; depends=[htmltools katex knitr mime rmarkdown sass xfun]; }; minimalRSD = derive2 { name="minimalRSD"; version="1.0.0"; sha256="1p1jpi8lnv952k4c1wjgbgpb0hv4zg0f9qrd43cx0caibkqvhzf7"; depends=[]; }; minimap = derive2 { name="minimap"; version="0.1.0"; sha256="0y5yzic9pwpzs01gnl82syankijcjp85n22jn5zda0bp3y01r53r"; depends=[]; }; - minimax = derive2 { name="minimax"; version="1.0"; sha256="1g0d9q5h1avbb0yg7ajw5330820i3n5cgkpsif754l4j3ikya8p3"; depends=[]; }; + minimax = derive2 { name="minimax"; version="1.1"; sha256="0108gwdaaag219f2azzmd365d866bvlxvg247xin58f7sfdy038w"; depends=[]; }; minimaxdesign = derive2 { name="minimaxdesign"; version="0.1.5"; sha256="0mraklk79w2r4rx450pkajgh5s9pk7wa3gcbd98xkd03ns11s9v8"; depends=[conf_design DiceDesign DoE_base doParallel doSNOW foreach FrF2 geometry gmp gtools jpeg MaxPro nloptr pdist randtoolbox Rcpp RcppArmadillo]; }; minimist = derive2 { name="minimist"; version="0.1"; sha256="007y829d766b1v6wkrhk7pkg99r38bvmhc8bwvs8rs13dr7444ln"; depends=[V8]; }; minpack_lm = derive2 { name="minpack.lm"; version="1.2-1"; sha256="18ym2pdql5vzngc7q5gn66d153hrfrnd8ilv8yh6vd7j7sx7vjql"; depends=[]; }; @@ -12559,6 +12597,7 @@ in with self; { minxent = derive2 { name="minxent"; version="0.01"; sha256="1a0kak4ff1mnpvc9arr3sihp4adialnxxyaacdgmwpw61wgcir7h"; depends=[]; }; mipfp = derive2 { name="mipfp"; version="3.2.1"; sha256="1gxazpg81vj5dywpb6jb29188jw28qil6pfygawa7znnjn3k5ca6"; depends=[cmm numDeriv Rsolnp]; }; mipplot = derive2 { name="mipplot"; version="0.3.1"; sha256="126arvxq6gmaiwk3n3p0slnb1mhs3qf993m4lx95nlmnv612ag66"; depends=[data_table dplyr ggplot2 readr readxl reshape reshape2 rlang shiny shiny_i18n shinyalert shinyWidgets showtext showtextdb stringr tidyr]; }; + mirai = derive2 { name="mirai"; version="0.1.0"; sha256="014mqn9f25hgzrvyh46axhgak8h945asdslyflf99w0pdl6xl22x"; depends=[nanonext]; }; mirt = derive2 { name="mirt"; version="1.35.1"; sha256="0gmssa6cx2rdphq6v5d3jhxrjkhc4sngsp7bj3szaj3xkd4px2vq"; depends=[dcurver Deriv GPArotation gridExtra lattice Matrix mgcv Rcpp RcppArmadillo vegan]; }; mirtCAT = derive2 { name="mirtCAT"; version="1.12"; sha256="0pi6xwvia0njkmdpvr8bbp7ha05rcazw3qbva9gf518ffwvda9gy"; depends=[lattice lpSolve markdown mirt pbapply Rcpp RcppArmadillo shiny]; }; mirtjml = derive2 { name="mirtjml"; version="1.4.0"; sha256="1zvm8acywpzi87lz0hpxmr8c9kyqkbx0490q3vlwxd90ffcdp9ml"; depends=[GPArotation Rcpp RcppArmadillo]; }; @@ -12574,7 +12613,7 @@ in with self; { miscset = derive2 { name="miscset"; version="1.1.0"; sha256="1gwi7jnqdf2fa8yk8gmcc7dcv72bbdl7yj3yccj3r5jjk41vdp91"; depends=[data_table devtools ggplot2 gridExtra Rcpp xtable]; }; mise = derive2 { name="mise"; version="0.1.0"; sha256="1ydbm76w3y0p5h82shxjblwlzbrmzwx0bgq9w2axjwz2nx8jfw0a"; depends=[]; }; miselect = derive2 { name="miselect"; version="0.9.0"; sha256="0dfqni7r5zwdvwmrmvqhycmxhazivz6vnz2ccjy0hyfad29g0v7s"; depends=[]; }; - mispitools = derive2 { name="mispitools"; version="0.1.5"; sha256="0mipc3s0n7j48nrahb2zz5kmh9656gx2gp67riva3nsj5iax0d7g"; depends=[DirichletReg dplyr forrel highcharter pedtools plotly tidyr tidyverse]; }; + mispitools = derive2 { name="mispitools"; version="0.1.9"; sha256="1p9w742jsp7dx104s29z5hk2c61m48kg52db7vifj5m85l5g0i5b"; depends=[DirichletReg dplyr forrel highcharter pedtools plotly tidyr tidyverse]; }; mispr = derive2 { name="mispr"; version="1.0.0"; sha256="166piax3f7di8h0i07fbdx45lxz1p47j378v6yl6zdc3525adpjx"; depends=[e1071 MASS penalized]; }; misreport = derive2 { name="misreport"; version="0.1.1"; sha256="1f78zcw4cg51mjvflhwd64hip2gj8x9ng1mhh4w43yv3x8hmbd6h"; depends=[mvtnorm numDeriv VGAM]; }; missCompare = derive2 { name="missCompare"; version="1.0.3"; sha256="03j69xw54d076znx19dplw4xznvgky90hxh3wgypg0g5pjg63y53"; depends=[Amelia data_table dplyr ggdendro ggplot2 Hmisc ltm magrittr MASS Matrix mi mice missForest missMDA pcaMethods plyr rlang tidyr VIM]; }; @@ -12582,7 +12621,7 @@ in with self; { missDiag = derive2 { name="missDiag"; version="1.0.1"; sha256="04zd3nds44sy7nz73kdq9wjis3r9zyp0kda54mfqps1sh9jnizlq"; depends=[cobalt Formula]; }; missForest = derive2 { name="missForest"; version="1.4"; sha256="0y02dhrbcx10hfkakg5ysr3kpyrsh2d9i5b0qzhj9x5x0d5q11gp"; depends=[foreach itertools randomForest]; }; missMDA = derive2 { name="missMDA"; version="1.18"; sha256="1s7ph89y0mrksdi73nnjnxl2354401ny8ziijzf036rcsiyvl8m5"; depends=[doParallel FactoMineR foreach ggplot2 mice mvtnorm]; }; - missMethods = derive2 { name="missMethods"; version="0.2.0"; sha256="0rsx7fdg0k8ajpj81ybl2jc9s8sprc2si6zx7mkvcqgw9iacrdik"; depends=[]; }; + missMethods = derive2 { name="missMethods"; version="0.3.0"; sha256="12hr9j0433cjm1qk8fma7sqlim4klay83mvpai9csqil214sb73a"; depends=[]; }; missRanger = derive2 { name="missRanger"; version="2.1.3"; sha256="1kk64q9ip6hhjcyrvnm5yd8ikilrvvw1vjz8166c6jb8xrqwbb2v"; depends=[FNN ranger]; }; missSBM = derive2 { name="missSBM"; version="1.0.2"; sha256="09i7cm4nsssn0scr5lmxs4yczcm7z3b4crj8jl7nhqf1azsvcd0n"; depends=[future_apply ggplot2 igraph magrittr Matrix nloptr R6 Rcpp RcppArmadillo rlang RSpectra sbm]; }; missSOM = derive2 { name="missSOM"; version="1.0.0"; sha256="02hi37jha49dppcv5cyzpcayb4b7mpmcp56nspbrlnxp9dgy7pim"; depends=[kpodclustr Rcpp]; }; @@ -12590,7 +12629,7 @@ in with self; { mistat = derive2 { name="mistat"; version="2.0.3"; sha256="068ycnnkqcmf3sracsa279lggyc1qxdkpcba7ghax0xl4y505yxj"; depends=[]; }; mistr = derive2 { name="mistr"; version="0.0.5"; sha256="02jm6z4a6zkqh7bfdmc1pqvdvz03crihwi9s60gv15c8xwr1dq7p"; depends=[bbmle]; }; mistral = derive2 { name="mistral"; version="2.2.1"; sha256="19iq9a3k7xyxafvm73ib8mj1k7ys69aznplqhidl5z8vdl92dmb7"; depends=[DiceKriging doParallel e1071 emoa foreach ggplot2 iterators Matrix mvtnorm quadprog Rcpp]; }; - misty = derive2 { name="misty"; version="0.4.3"; sha256="1i18yd6swhx945g99yfh9dcs8zm4gzln4qhw5lzf65ggwhcwqkdy"; depends=[haven lavaan lme4 norm readxl]; }; + misty = derive2 { name="misty"; version="0.4.4"; sha256="1cixlngn782gcjpyzci0xbw5lk852azrc5540kdci6bpx5h677mj"; depends=[ggplot2 haven lavaan lme4 nlme norm r2mlm readxl writexl]; }; mitml = derive2 { name="mitml"; version="0.4-3"; sha256="00i18nnvrdrg91crgcp2a431xs71cawaip3xkqk2myv0iav3xga9"; depends=[haven jomo pan]; }; mitools = derive2 { name="mitools"; version="2.4"; sha256="0c2x2n1p53lcw0vx4vmy5j7m2f95i7g2iwbryl89imr99rvz617j"; depends=[DBI]; }; mitre = derive2 { name="mitre"; version="1.0.0"; sha256="0r5phzxiibwwhx3qh623grfy070c3vzm4q07rzhsp5q5ycb5jhn5"; depends=[dplyr igraph jsonlite plyr RJSONIO rlang stringr tidyr]; }; @@ -12617,7 +12656,7 @@ in with self; { mixedsde = derive2 { name="mixedsde"; version="5.0"; sha256="0ss1ng4nx91gxj85wxxfyh9ljxsj3ag6lsj1a5d2815p9jzl7dsv"; depends=[MASS moments plot3D sde]; }; mixexp = derive2 { name="mixexp"; version="1.2.5"; sha256="0nbf10xhrr51rb1b2apcj4p3ci8xbi7flgz500ar3mxh8h8l74sq"; depends=[daewr gdata lattice]; }; mixl = derive2 { name="mixl"; version="1.3.3"; sha256="0vxvs6lvnkijhdy78lw19hp11ylf4afyg0v5xc5izbhwk3cp5nga"; depends=[maxLik numDeriv randtoolbox Rcpp readr sandwich stringr]; }; - mixlm = derive2 { name="mixlm"; version="1.2.5"; sha256="0k7sy2bkf6vsp5qkz33327p1kjyzn3cxmxzc6dmw6g29c4dyxkac"; depends=[car leaps multcomp pls pracma]; }; + mixlm = derive2 { name="mixlm"; version="1.2.6"; sha256="1qccwiaqyvmpyklbbp6ay3xvln9wfizaxi6fjizzx2bjpng5043p"; depends=[car leaps multcomp pls pracma]; }; mixmeta = derive2 { name="mixmeta"; version="1.2.0"; sha256="093f6jjq0hc49k5kmjp17s2lv3swpssfxnra80bwv59ggav8w8d8"; depends=[]; }; mixpoissonreg = derive2 { name="mixpoissonreg"; version="1.0.0"; sha256="1pk45p96kwl3gvi5523vm824s1bb5aqpn9qqpqy8kjy2pd2a4k32"; depends=[dplyr Formula gamlss gamlss_dist generics ggplot2 ggrepel gridExtra lmtest magrittr pbapply Rfast rlang statmod tibble]; }; mixreg = derive2 { name="mixreg"; version="2.0-10"; sha256="1vmidnhb899lmprybym71w0l869msrgvlqr3099kwj05sph85pwm"; depends=[]; }; @@ -12634,7 +12673,7 @@ in with self; { mkde = derive2 { name="mkde"; version="0.1"; sha256="04v84arpnmjrkk88ffphnhkz32x7y0dypk75jfmbbgcgv59xlglv"; depends=[raster Rcpp sp]; }; mkin = derive2 { name="mkin"; version="1.0.5"; sha256="1nxdzll5v8551sgq0whqs2270lzvw923rl0kxvxbcwnsz27z26da"; depends=[deSolve inline lmtest nlme numDeriv pkgbuild purrr R6]; }; mknapsack = derive2 { name="mknapsack"; version="0.1.0"; sha256="1kzmx7d512681a4hjirfgcd7a8rvndb4da66p16gms5nnxzsby9c"; depends=[assertthat data_table lpSolve]; }; - mkssd = derive2 { name="mkssd"; version="1.1"; sha256="1qqzy6fn6sc3lxahc19hzzf1hzxsyvxqi7npynw0vkknlrvh2ijp"; depends=[]; }; + mkssd = derive2 { name="mkssd"; version="1.2"; sha256="1vgg5azr4qydqb6xbdbff9256bwz7gl3k3hpn7998rm9jhdmynnd"; depends=[]; }; mlVAR = derive2 { name="mlVAR"; version="0.5"; sha256="11mn7gaqlmw01gvg7psqkkr5bgv4iclv0590av4xzbvq8496f5g2"; depends=[abind arm clusterGeneration corpcor dplyr graphicalVAR lme4 MplusAutomation mvtnorm plyr qgraph rlang]; }; mlapi = derive2 { name="mlapi"; version="0.1.0"; sha256="023vk5bp8cjcq88sapkl87kdxr92bay1dyxl6xirnyj699pyj51k"; depends=[Matrix R6]; }; mlbench = derive2 { name="mlbench"; version="2.1-3"; sha256="157iqsld0wj8g8cbs7nh6p2x6kasmkhs3078hsmqac946gk2pydi"; depends=[]; }; @@ -12648,8 +12687,7 @@ in with self; { mleur = derive2 { name="mleur"; version="1.0-6"; sha256="0mddphq3b6y2jaafaa9y41842kcaqdl3dh7j4pva55q2vcjcclj7"; depends=[fGarch lattice stabledist urca]; }; mlf = derive2 { name="mlf"; version="1.2.1"; sha256="09ihnibpknpp26hdlbxyr99yz7z0n8qpsjs5aq3zngng0yh3wdn9"; depends=[]; }; mlfit = derive2 { name="mlfit"; version="0.5.3"; sha256="0nyk5vmy2gkpz022djacy80gibskv96z0rsmjz2rw14zhc5kizsh"; depends=[BB dplyr forcats hms kimisc lifecycle Matrix plyr rlang tibble wrswoR]; }; - mlflow = derive2 { name="mlflow"; version="1.23.0"; sha256="1g50nnqcdm82q4sbwa6mqq7v10nxqb2y2izhj9adjz8fkgyj8icl"; depends=[base64enc forge fs git2r glue httpuv httr ini jsonlite openssl processx purrr reticulate rlang swagger tibble withr yaml zeallot]; }; - mlgt = derive2 { name="mlgt"; version="0.16"; sha256="1nvdq6mvgr39ikkf73aggsb6pmbw132injj8fdkr8hgcmwm6lgd9"; depends=[seqinr]; }; + mlflow = derive2 { name="mlflow"; version="1.24.0"; sha256="0yqz0zlm2plz0i2p1zb3jaz4v8slr1p4jbk96cj9b5f6jsrvdkr2"; depends=[base64enc forge fs git2r glue httpuv httr ini jsonlite openssl processx purrr reticulate rlang swagger tibble withr yaml zeallot]; }; mlica2 = derive2 { name="mlica2"; version="2.1"; sha256="0c3m1zd9x99n6lw12hfzmd59355z51xa8rhg1h7qwfn9p86r826f"; depends=[]; }; mlmRev = derive2 { name="mlmRev"; version="1.0-8"; sha256="0ln4nazhc1prnlmvhfzhx268vx3klb0xnz1nsiwh0pwyskskyzym"; depends=[lme4]; }; mlma = derive2 { name="mlma"; version="6.1-1"; sha256="1z3v00g7ji0xkpz9ri4li3r7s8g2rcp2pc1p060cwsaidizs38dr"; depends=[abind car coxme gplots lme4 survival]; }; @@ -12657,31 +12695,32 @@ in with self; { mlmi = derive2 { name="mlmi"; version="1.1.1"; sha256="0ksx5qih54ww983ycs08hhr50ms2c2k6pk07mrcwdgli7irzc2cc"; depends=[cat gsl MASS Matrix mix nlme norm]; }; mlmm_gwas = derive2 { name="mlmm.gwas"; version="1.0.6"; sha256="14xp8k7sww1skyw5l2006gpaw2c6yrri5nmfx4yav4vqdlhcj2k1"; depends=[coxme Matrix multcomp multcompView sommer]; }; mlmmm = derive2 { name="mlmmm"; version="0.3-1.2"; sha256="1m5ziiqs3ll1xjm1yf7x4sdc910jypn3kjnbadf95xxkvqmfrsqq"; depends=[]; }; + mlmts = derive2 { name="mlmts"; version="1.0.0"; sha256="0vgrwcbhj4a3vlf9bddzfnicc6bsq0q2ryilq7kdv4yn58d5ggxx"; depends=[AID caret ClusterR complexplus DescTools dtw e1071 evolqg fda_usc forecast freqdom geigen ggplot2 MASS Matrix MTS multiwave pracma pspline psych quantspec ranger Rdpack Rfast TSA TSclust TSdist tseries tseriesChaos tsfeatures waveslim]; }; mlogit = derive2 { name="mlogit"; version="1.1-1"; sha256="0hyi6gi03n895iydrfr1ba2ifbsd6lyjyhkq62d95ghhniysjgkg"; depends=[dfidx Formula lmtest MASS Rdpack statmod zoo]; }; mlogitBMA = derive2 { name="mlogitBMA"; version="0.1-6"; sha256="1wl8ljh6rr1wx7dxmd1rq5wjbpz3426z8dpg7pkf1x9wr94a2q25"; depends=[abind BMA maxLik]; }; mlpack = derive2 { name="mlpack"; version="3.4.2.1"; sha256="0fqpajcmqn9rijzjg7qj0zd2lik4xmhp5dmhbm3mdc9ssdg0axbr"; depends=[BH Rcpp RcppArmadillo RcppEnsmallen]; }; mlquantify = derive2 { name="mlquantify"; version="0.2.0"; sha256="1fpwvix0f4bmqb1y1b6wryndqp6j24dwsspbfx1zrnhzwj1v4i9i"; depends=[caret FNN randomForest]; }; mlr = derive2 { name="mlr"; version="2.19.0"; sha256="04v1br59ykzhzaiybjyyknbrc7ai5nl5l106b7482r49afscjj8i"; depends=[backports BBmisc checkmate data_table ggplot2 parallelMap ParamHelpers stringi survival XML]; }; - mlr3 = derive2 { name="mlr3"; version="0.13.1"; sha256="052685d08cfsrh3r31yn05ngwi6z3fmz26gwiy32z7cpcigz8jjs"; depends=[backports checkmate data_table future future_apply lgr mlbench mlr3measures mlr3misc palmerpenguins paradox parallelly R6 uuid]; }; + mlr3 = derive2 { name="mlr3"; version="0.13.3"; sha256="010kl51zsgpc0qv63g1fg9kiw9m0wzqskcr14f1j8b9zi1lwi0bf"; depends=[backports checkmate data_table evaluate future future_apply lgr mlbench mlr3measures mlr3misc palmerpenguins paradox parallelly R6 uuid]; }; mlr3benchmark = derive2 { name="mlr3benchmark"; version="0.1.3"; sha256="0j56l8yi1c0sa3fsychrvv42rpip2d300yccps0bj636c5r7na64"; depends=[checkmate data_table ggplot2 mlr3misc R6]; }; mlr3cluster = derive2 { name="mlr3cluster"; version="0.1.2"; sha256="15sbxpp3lawh30dh3hznig12xp68p83p4rz6si6b6jjddcgsw3rq"; depends=[backports checkmate clue clusterCrit data_table mlr3 mlr3misc paradox R6]; }; mlr3data = derive2 { name="mlr3data"; version="0.5.0"; sha256="1bck1rsnp4a9bkzyjrdxn1n12lkgkj0gwiwxrf9maj0l8x3kfpyw"; depends=[]; }; mlr3db = derive2 { name="mlr3db"; version="0.4.2"; sha256="17gahnzhraixxxmyinsh1pnrsfqy5kznw5ynfcwyrzpbinx4drih"; depends=[backports checkmate data_table mlr3 mlr3misc R6]; }; mlr3filters = derive2 { name="mlr3filters"; version="0.5.0"; sha256="14qq42rj8r6304yb54bs4fjld202zqf2lwd0vrz8ak6sn6jn7dbs"; depends=[backports checkmate data_table mlr3 mlr3misc paradox R6]; }; mlr3fselect = derive2 { name="mlr3fselect"; version="0.6.1"; sha256="064rc35ij833pwcwg0xx600j8vbv762irr4cld7x356ijprd51ys"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3pipelines paradox R6]; }; - mlr3hyperband = derive2 { name="mlr3hyperband"; version="0.3.0"; sha256="0l6sljxgllpw5pf5d81lf92nn21r02cqpk2f0y8f6gn94yrk1mwb"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3tuning paradox R6]; }; + mlr3hyperband = derive2 { name="mlr3hyperband"; version="0.4.0"; sha256="0r7wm6s1k5jsx18f625970vxj7mccla5hxwnxhn6m8w5fic2kaa3"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc mlr3tuning paradox R6]; }; mlr3learners = derive2 { name="mlr3learners"; version="0.5.2"; sha256="1d9hcrnj622ynrzg0ii0fkhz2n66ip46yln21jq1pwpwkqwqzv35"; depends=[checkmate data_table mlr3 mlr3misc paradox R6]; }; mlr3measures = derive2 { name="mlr3measures"; version="0.4.1"; sha256="1kbw3xd7c9x65v9zzs8i5skmrvl0mf2wsbyssmiif0lvrbzfhcmb"; depends=[checkmate PRROC]; }; mlr3misc = derive2 { name="mlr3misc"; version="0.10.0"; sha256="1wnzyij1x67smkb3gjb9gpp7iy5andfl0s1c78xx4wylhycc6m11"; depends=[backports checkmate data_table digest R6]; }; mlr3oml = derive2 { name="mlr3oml"; version="0.5.0"; sha256="1w4hjzzmy968mzgyg6ybcpq09n9zkhiwi2ccm41rvwaysl27rgfd"; depends=[backports checkmate curl data_table jsonlite lgr mlr3 mlr3misc R6 stringi]; }; mlr3pipelines = derive2 { name="mlr3pipelines"; version="0.4.0"; sha256="0913f67c1r9bi68gxh1prsp0vch21bl6plahnvjrlbq8rrs1sr6p"; depends=[backports checkmate data_table digest lgr mlr3 mlr3misc paradox R6 withr]; }; - mlr3proba = derive2 { name="mlr3proba"; version="0.4.3"; sha256="1giwab6hdn15xn0vnimnqihl3grrk6vw0p2yf1r590nnqmnyadic"; depends=[checkmate data_table distr6 mlr3 mlr3misc paradox R6 Rcpp survival]; }; + mlr3proba = derive2 { name="mlr3proba"; version="0.4.4"; sha256="03ypd6mvqapgisb75y619v5pqdbpx3s68q5vdffp4nzpj2wzvnmi"; depends=[checkmate data_table distr6 mlr3 mlr3misc paradox R6 Rcpp survival]; }; mlr3shiny = derive2 { name="mlr3shiny"; version="0.2.0"; sha256="0s581aqi3a3kg35db0gnsmmg62zwl5bij4vbszjhc63i3xg0ayiz"; depends=[data_table DT e1071 mlr3 mlr3learners mlr3measures plyr purrr ranger readxl shiny shinyalert shinydashboard shinyjs shinythemes shinyWidgets stringr]; }; - mlr3spatial = derive2 { name="mlr3spatial"; version="0.1.1"; sha256="05ix722xmaxgv1w2gmr07dalail32hpblmlsy5wgkscyp0slqzzg"; depends=[checkmate data_table lgr mlr3 mlr3misc R6 terra]; }; - mlr3spatiotempcv = derive2 { name="mlr3spatiotempcv"; version="1.0.0"; sha256="0y04w96xk3m786aamqv9p91gqqyi19dc0shgkwlba32lkd5rqj0w"; depends=[checkmate data_table ggplot2 mlr3 mlr3misc paradox R6]; }; - mlr3tuning = derive2 { name="mlr3tuning"; version="0.11.0"; sha256="0avs0yj11xw3910mksv5bynip8w39mcqjda8qf0a2mnwnjx29kri"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc paradox R6]; }; + mlr3spatial = derive2 { name="mlr3spatial"; version="0.1.2"; sha256="1iwbrr9bmwk3bdf7qycn8kpfyqb6n8cracrjj2cafb3xj2r5vimn"; depends=[checkmate data_table lgr mlr3 mlr3misc R6 terra]; }; + mlr3spatiotempcv = derive2 { name="mlr3spatiotempcv"; version="1.0.1"; sha256="1fws2jqjbjkbcww1nkl6pvj1gzwb3b52q8fykwf7mivgqf93ipzf"; depends=[checkmate data_table ggplot2 mlr3 mlr3misc paradox R6]; }; + mlr3tuning = derive2 { name="mlr3tuning"; version="0.12.1"; sha256="0qly6bsfazqcf0a7c2a6k3wghczm8v1fxw9pxa76gpw51x2j2ld0"; depends=[bbotk checkmate data_table lgr mlr3 mlr3misc paradox R6]; }; mlr3tuningspaces = derive2 { name="mlr3tuningspaces"; version="0.1.1"; sha256="14hsm00n3nk7x6521kccakkj0hpmw3c3yjl7dh6hjhggg9p6xkz9"; depends=[checkmate data_table mlr3 mlr3misc mlr3tuning paradox R6]; }; - mlr3verse = derive2 { name="mlr3verse"; version="0.2.2"; sha256="1rgvhxjqxdrdhbslfxcli4mlafgvswc164yzv7rms60asvq1sndw"; depends=[bbotk data_table mlr3 mlr3cluster mlr3data mlr3filters mlr3fselect mlr3learners mlr3misc mlr3pipelines mlr3proba mlr3tuning mlr3viz paradox]; }; + mlr3verse = derive2 { name="mlr3verse"; version="0.2.4"; sha256="02bmdvkh76qzimkrkaqkmjxpzx1sds3wkawp8d62a3dqd5225f9s"; depends=[bbotk data_table mlr3 mlr3cluster mlr3data mlr3filters mlr3fselect mlr3hyperband mlr3learners mlr3misc mlr3pipelines mlr3proba mlr3tuning mlr3tuningspaces mlr3viz paradox]; }; mlr3viz = derive2 { name="mlr3viz"; version="0.5.7"; sha256="1agl6s6i9l7mk8mrvmnz7csqsc77dwjnymlrqcy5vxddr2nfc47l"; depends=[checkmate data_table ggplot2 mlr3misc]; }; mlrCPO = derive2 { name="mlrCPO"; version="0.3.7-3"; sha256="0vq163ca446l2sb3jbn8wmvj26zsrpz52b1w7d8xgb0jjf2jhp91"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; }; mlrMBO = derive2 { name="mlrMBO"; version="1.1.5"; sha256="1f2ryd0mrlnnwxgwiria2sxqkb09kskfqjzsh32cbxh6ml4d3fbs"; depends=[backports BBmisc checkmate data_table lhs mlr parallelMap ParamHelpers smoof]; }; @@ -12725,9 +12764,8 @@ in with self; { mobilityIndexR = derive2 { name="mobilityIndexR"; version="0.2.1"; sha256="0bs2wvbjcrfh82b483vz4lr16y2vaajz2fb1p5bw05qb78jqj9bd"; depends=[]; }; mobirep = derive2 { name="mobirep"; version="0.2.3"; sha256="06f7vn3ndkadwp60qvvh3yikdx97r6fkqldn67l1506vdr60pxfm"; depends=[copBasic copula ggplot2 ks lattice SpatialExtremes texmex viridis zoo]; }; mobr = derive2 { name="mobr"; version="2.0.2"; sha256="0dvsarxkjcjn3f40qkx5pdjpvq7hr6l5nvdz6adxlr1sdbadfcws"; depends=[dplyr egg geosphere ggplot2 pbapply plotrix purrr rlang scales tibble tidyr vctrs]; }; - mobsim = derive2 { name="mobsim"; version="0.2.0"; sha256="0an8j5kj0cs1bjz9kwzwc54hm0zaiz5rsaw78ihldw0mx5n175gn"; depends=[Rcpp sads vegan]; }; moc = derive2 { name="moc"; version="2.0"; sha256="0fgp8dg9qf7aw1qawmszlxs4bcccqmd87y4kkzdqggm807c2k5gh"; depends=[]; }; - mockery = derive2 { name="mockery"; version="0.4.2"; sha256="16zayzi2qdmiy513hvlci9f4p8jwry24006yfzrgmrvf6sf293lq"; depends=[testthat]; }; + mockery = derive2 { name="mockery"; version="0.4.3"; sha256="0sj77m9vgn4bzb8c8nq93xb9lm8ih8rcb7sfccripraibibg3jcz"; depends=[testthat]; }; mockr = derive2 { name="mockr"; version="0.1"; sha256="0340v6189ivlzzriwk7yhf3v2k651x05fd1xrqfxxjgwhysaqj6z"; depends=[lazyeval]; }; mockthat = derive2 { name="mockthat"; version="0.2.6"; sha256="12srlafk3ykzhrw65s1qzw3l566j285hi28rzrcpbgyr12720raa"; depends=[]; }; mod = derive2 { name="mod"; version="0.1.3"; sha256="0z5a6ps2m0cbw0n9kn44767m5jnbf1dl077i2p40fipv8xali9fb"; depends=[]; }; @@ -12744,8 +12782,8 @@ in with self; { modelDown = derive2 { name="modelDown"; version="1.1"; sha256="1l0aggkh0ykpqrp59bdz1cyl1ai397cw4hya80b7fm7s49imwczg"; depends=[archivist auditor breakDown DALEX devtools drifter DT ggplot2 kableExtra psych svglite whisker]; }; modelObj = derive2 { name="modelObj"; version="4.1"; sha256="0afws8vd7qj9m2ikj0ph1vp2rgr3v979hp3qjapgmln1cwglchlw"; depends=[]; }; modelROC = derive2 { name="modelROC"; version="1.0"; sha256="0iyx7c98ym7dy6pfssj7474h9wjpzjwy0fyc5bnqyi1lmjgd508k"; depends=[do ggplot2 ROCit survivalROC tmcn]; }; - modelStudio = derive2 { name="modelStudio"; version="3.0.0"; sha256="0gs9r5502ks44ks1phfj8lq13rh6pl8rc2d2fcxadfpvm7ym7x5r"; depends=[DALEX digest iBreakDown ingredients jsonlite progress r2d3]; }; - modelbased = derive2 { name="modelbased"; version="0.7.1"; sha256="1gf7lw3z0vw6hc9xp6kfky7778wmd1m4lyh1wyhsn6dsv5d0kbl1"; depends=[bayestestR datawizard effectsize insight parameters performance]; }; + modelStudio = derive2 { name="modelStudio"; version="3.1.0"; sha256="0hd3x5jnj3s4b0hahxzjxfclhr92adf1xhs7hgc1k8bm9ngnqqxm"; depends=[DALEX digest iBreakDown ingredients jsonlite progress r2d3]; }; + modelbased = derive2 { name="modelbased"; version="0.7.2"; sha256="1akwp565ab26w32v3s1w1xi3baw5mrp46jjjv347w6nbbb7c1w4f"; depends=[bayestestR datawizard effectsize insight parameters performance]; }; modelc = derive2 { name="modelc"; version="1.0.0.0"; sha256="0xz1zgv5yyvq0yfnhm1kvb4wvlyn4ccd0lkwji55vq8hndvjvk98"; depends=[]; }; modeldata = derive2 { name="modeldata"; version="0.1.1"; sha256="0jgrwf9k8p9j3ywg3yv2wzwsx3snlwm3dd9vfqwhlr7j63jg3cm4"; depends=[]; }; modeldb = derive2 { name="modeldb"; version="0.2.2"; sha256="14s8xh05qxv414xcnww1b3s0jqwnjb3l1dqf7q1qbw33ilwcmsfb"; depends=[dplyr ggplot2 progress purrr rlang tibble tidypredict]; }; @@ -12754,7 +12792,7 @@ in with self; { modelimpact = derive2 { name="modelimpact"; version="1.0.0"; sha256="16sy7r6bw5nzx77rd27ihgvp7bs39xchgid94ssklj6syc3kn2vq"; depends=[dplyr magrittr]; }; modelplotr = derive2 { name="modelplotr"; version="1.1.0"; sha256="0i1ssfcyl97zaxc9khdngrmsq9ydrmgv2nd7c6kc6i9z93jbkk4k"; depends=[dplyr ggfittext ggplot2 gridExtra magrittr RColorBrewer rlang scales]; }; modelr = derive2 { name="modelr"; version="0.1.8"; sha256="1i31nff7bqibk6r4hhd4j1vzwbyaf8493v0bjaagn36njmysfnw2"; depends=[broom magrittr purrr rlang tibble tidyr tidyselect vctrs]; }; - modelsummary = derive2 { name="modelsummary"; version="0.9.5"; sha256="0bnz3khb6ajnvsv42j2nmwwmyc2cpvxi7c6d6wd0kxr49iw1z3ik"; depends=[broom checkmate generics glue insight kableExtra parameters performance rlang tables]; }; + modelsummary = derive2 { name="modelsummary"; version="0.9.6"; sha256="1nzahrqqfkc7zbksmlpyvnp7izpcyvck7nhg3nmr6q5paxm1g0f6"; depends=[broom checkmate generics glue insight kableExtra parameters performance rlang tables]; }; modeltests = derive2 { name="modeltests"; version="0.1.4"; sha256="0ii5sh8yz5yvf0gq41ia55dvbg8x9042x82j52ck6haxa0w8zpfy"; depends=[dplyr generics purrr testthat tibble]; }; modeltime = derive2 { name="modeltime"; version="1.1.1"; sha256="1m888hbnwvxmvbf4mk219vhiq2fglc6545j26hc1m73bfaxg73dv"; depends=[cli dials doParallel dplyr forcats foreach forecast ggplot2 glue gt hardhat janitor magrittr parsnip plotly prophet purrr reactable rlang scales StanHeaders stringr tibble tidyr timetk workflows xgboost yardstick]; }; modeltime_ensemble = derive2 { name="modeltime.ensemble"; version="1.0.0"; sha256="01mi6pkjn97c77kyddz6xsyz11kchkdqy6672p8r96h0wy7530a1"; depends=[cli doParallel dplyr foreach generics glue magrittr modeltime modeltime_resample parsnip purrr recipes rlang rsample stringr tibble tictoc tidyr timetk tune workflows yardstick]; }; @@ -12799,11 +12837,12 @@ in with self; { monitoR = derive2 { name="monitoR"; version="1.0.7"; sha256="1h1g0m1j13mz37xxwck4s7a0bfqvi0nrzfw60j7bkzaah8zxcc9n"; depends=[tuneR]; }; monmlp = derive2 { name="monmlp"; version="1.1.5"; sha256="19cx60csm8mnf6ksg64vlhi8wi1c7bmv9l55y9zmaljblr0kmzxf"; depends=[optimx]; }; monoClust = derive2 { name="monoClust"; version="1.2.1"; sha256="18zb4wfb09rpzzr9bc0nr71994nhgsk74s512dxlss50isvfqjqd"; depends=[cluster doParallel dplyr foreach ggplot2 permute purrr rlang stringr tibble tidyr]; }; - monobin = derive2 { name="monobin"; version="0.2.1"; sha256="13261k81xpjvbjny938y124r2cqn36c93s177gbg1m0c8k4jlb4i"; depends=[dplyr Hmisc]; }; + monobin = derive2 { name="monobin"; version="0.2.2"; sha256="1l3nc1sw206wdxswrz1l93zh0p9bi8xzipnszrab4jbcydn1f6qd"; depends=[dplyr Hmisc]; }; monobinShiny = derive2 { name="monobinShiny"; version="0.1.0"; sha256="1ix376j39fby5571irf8i5bmz8i7nnvfzbvs5cv0k42dcgq93m0g"; depends=[dplyr DT monobin shiny shinydashboard shinyjs]; }; monochromeR = derive2 { name="monochromeR"; version="0.1.0"; sha256="1zm5d4ipjlkvlhcqnq2cl5amv85n3iflb34915n12rjs68hbcjmd"; depends=[scales]; }; monographaR = derive2 { name="monographaR"; version="1.2.1"; sha256="09fkcw13h7dx7j5vyp48fk6yzv9n64568zf2zvmm2c008jw3gkbm"; depends=[circular maptools png raster rmarkdown sp]; }; monomvn = derive2 { name="monomvn"; version="1.9-13"; sha256="1hm5qf28bh0q7f4zcjqx1qxw3l8hzkx349c1y3nwyfg7436vff6a"; depends=[lars MASS mvtnorm pls quadprog]; }; + monoreg = derive2 { name="monoreg"; version="2.0"; sha256="059y5rj74b2rgkqmqqa4v74ih6knydj3kb2hr7hz4xj36cg01x54"; depends=[]; }; monotone = derive2 { name="monotone"; version="0.1.0"; sha256="1091xqa88gdp64b65610mfcknyz29kb980iqbvwnmlk12csszr1w"; depends=[]; }; monotonicity = derive2 { name="monotonicity"; version="1.3.1"; sha256="0bb6sl8yykry25a86qfggi36ggr1xrxcqsnzp6rb6na228hbwa2z"; depends=[lmtest MASS sandwich]; }; monreg = derive2 { name="monreg"; version="0.1.4"; sha256="15qgfhbd8ny05rjd1nn33ynh4i7m7wcy8az53jraghlk760bymwg"; depends=[]; }; @@ -12834,6 +12873,7 @@ in with self; { motifr = derive2 { name="motifr"; version="1.0.0"; sha256="01synariq39mzhx12jbcpwn982piakakl97sgs33xa8xrbwzcxgm"; depends=[dplyr ggplot2 ggraph igraph intergraph network purrr RColorBrewer reshape2 reticulate rlang scales tibble tidygraph]; }; motmot = derive2 { name="motmot"; version="2.1.3"; sha256="09qsyc4ifdl316kjqqkarmflpjcd0ivkhx5fzi3502anj6dxpjnq"; depends=[ape caper coda ks mvtnorm Rcpp]; }; motoRneuron = derive2 { name="motoRneuron"; version="1.0.0"; sha256="1hdsf4c1v5hfaqpi5y1v60zqq5fdmlqdvzpsq77diclp9vzdshja"; depends=[dygraphs ggplot2]; }; + moult = derive2 { name="moult"; version="2.2.1"; sha256="1aarny5p0rpmzibfsz27allr6xc6267ylc3wvpk7pzch6yj759zm"; depends=[Formula Matrix]; }; mountainplot = derive2 { name="mountainplot"; version="1.3"; sha256="1mgvcv58pb3ximrf7gq1ii53gmjrn1qajayjlx8qqzsvjkn3myin"; depends=[lattice]; }; mousetrack = derive2 { name="mousetrack"; version="1.0.0"; sha256="0lf0xh0c3xl27nh5w8wwyrm2jfzfajm2f73xjdgf746dp365qc8n"; depends=[pracma]; }; mousetrap = derive2 { name="mousetrap"; version="3.2.1"; sha256="12vlb5fhq9m2f3c073xzdqk98gdq7jk2rwj6kcckxx6x7wg20fyd"; depends=[cstab diptest dplyr fastcluster fields ggplot2 lifecycle magrittr pracma psych RColorBrewer Rcpp rlang scales tidyr]; }; @@ -12842,11 +12882,10 @@ in with self; { moveHMM = derive2 { name="moveHMM"; version="1.7"; sha256="031msh427hgjyr37imalr7smd79yqscw9xq5rjrixxc2w5qly9jj"; depends=[boot CircStats geosphere ggmap ggplot2 MASS numDeriv Rcpp RcppArmadillo sp]; }; moveVis = derive2 { name="moveVis"; version="0.10.5"; sha256="1lj22yr6v3vg795r72gkbhyabycppxbjsaldqiqgckhkdfh3lziw"; depends=[av cowplot curl ggplot2 gifski lubridate lwgeom magick magrittr move pbapply raster sf slippymath]; }; moveWindSpeed = derive2 { name="moveWindSpeed"; version="0.2.3"; sha256="14a2iymn4j831xlh42z5qxmhnh7xpp5bxasgpkhnb3v0b5ldyilh"; depends=[move Rcpp]; }; - movecost = derive2 { name="movecost"; version="1.4"; sha256="1fmfzrgk7a5fcqp61a8755fyasn217ixkwmpmjkpjfk77m1wdali"; depends=[chron elevatr gdistance maptools raster rgdal rgeos sp spatstat_geom]; }; + movecost = derive2 { name="movecost"; version="1.5"; sha256="0f80gpzghxnq80sl17zzpi3xj4gxgfiyx5jh1j01bngq1iy7m0r1"; depends=[chron elevatr gdistance maptools raster rgdal rgeos sp spatstat_geom]; }; mozzie = derive2 { name="mozzie"; version="0.1.0"; sha256="09dwrv4r0hi19gzi1vpif3q4wlbny9h22430g1hhv0wkqs86mhmw"; depends=[]; }; mp = derive2 { name="mp"; version="0.4.1"; sha256="0awvwqwb25q47j14b450k1k5mh2yzwhn7gizjv5j7lyiamk30iwq"; depends=[Rcpp RcppArmadillo]; }; - mpa = derive2 { name="mpa"; version="0.7.3"; sha256="0mhnsbgr77fkn957zfiw8skyvgd084rja1y4wk5zf08q5xjs2zvn"; depends=[network]; }; - mpath = derive2 { name="mpath"; version="0.4-2.20"; sha256="08ph3vzrd2k2njd1gl4pxlmrnn2sxrs60ah8cb0m6f173lcapgwm"; depends=[bst doParallel foreach glmnet MASS numDeriv pamr pscl WeightSVM]; }; + mpath = derive2 { name="mpath"; version="0.4-2.22"; sha256="0i4vyli3sr1lzrj0ayzsq55cpsv0xrwn216lgzmfyjr5n8r9aw7r"; depends=[bst doParallel foreach glmnet MASS numDeriv pamr pscl WeightSVM]; }; mpbart = derive2 { name="mpbart"; version="0.2"; sha256="1145n0lxmm0kjm2lc358d79hqws48crj17pjvmchl1pbfd7zi4r8"; depends=[bayesm cvTools mlbench mlogit]; }; mpcmp = derive2 { name="mpcmp"; version="0.3.6"; sha256="1jzrmaxm133zy4wi5pzjlj6gnh89nx4j69dnwm4s4y3i7ixch908"; depends=[dplyr generics ggplot2 ggpubr purrr Rcpp rlang stringr tibble]; }; mpcv = derive2 { name="mpcv"; version="1.1"; sha256="0vwycspiw9saj811f6alkbijivy7szpahf35bxn2rpn2bdhbn21i"; depends=[lpSolve]; }; @@ -12868,12 +12907,12 @@ in with self; { mra = derive2 { name="mra"; version="2.16.11"; sha256="0268msdy4cs2ifpagmwiabi6aav54ckn214ai18aqv2h97hmixw0"; depends=[]; }; mratios = derive2 { name="mratios"; version="1.4.2"; sha256="18pi0dks0qmw0gv76yqm4gvxdqrcvr25j1vb8k4mkp5p35kzkzff"; depends=[multcomp mvtnorm survival survPresmooth]; }; mrbayes = derive2 { name="mrbayes"; version="0.5.1"; sha256="11n3d18di01vmwqs5a0i1h8839aammzbcavi1jk58bmrwb3l771j"; depends=[BH plyr Rcpp RcppEigen rstan rstantools StanHeaders]; }; - mrbin = derive2 { name="mrbin"; version="1.6.2"; sha256="1vvccsb3rlr01bpp3khn11q2ad18dn5pgkcj72ln8jn1yfw2jckm"; depends=[]; }; + mrbin = derive2 { name="mrbin"; version="1.6.3"; sha256="0w9m1mmvp6m3zhkxdr7fj96z143kq0qnc6kpg2ixn1sl4nzdfx0c"; depends=[]; }; mrbsizeR = derive2 { name="mrbsizeR"; version="1.2.1.1"; sha256="0v06sd5sh7ghlr8lgrv6l4glmv7chj3951pw4ssxrly4hz2rh6i0"; depends=[fields maps Rcpp]; }; mrds = derive2 { name="mrds"; version="2.2.5"; sha256="1659nzdykl4mgfgyniwnwrn1a0m6wiz7c02ygwpm90bnz8f4g5y2"; depends=[mgcv numDeriv optimx Rsolnp]; }; mreg = derive2 { name="mreg"; version="1.1"; sha256="06la0yy2yys161jhlzlcm5lcv0664wm6sa8gjdnpd1s1nx52jkqf"; depends=[]; }; mregions = derive2 { name="mregions"; version="0.1.6"; sha256="0ix77hqcllhcpldchlnvciiflm6ysylynnnqvczpf8vx7gwa3lrk"; depends=[data_table httr jsonlite rappdirs sp tibble wellknown xml2]; }; - mrf = derive2 { name="mrf"; version="0.1.5"; sha256="169sw6wvxdy6j9b1vcng6dsxvq1h23pyzp0dnry3yp06yjz76wq6"; depends=[DEoptim forecast limSolve monmlp nnfor]; }; + mrf = derive2 { name="mrf"; version="0.1.6"; sha256="0jqpx0ng0l8f7y941awpi82yqbv8ir0sixiw6zdkqpj82d9a7j9m"; depends=[DEoptim forecast limSolve monmlp nnfor]; }; mrf2d = derive2 { name="mrf2d"; version="1.0"; sha256="0fmxn178bkw77iz51bnjxala9xmhs44km57m8msvlw0k69sddyif"; depends=[dplyr ggplot2 Rcpp RcppArmadillo Rdpack tidyr]; }; mrfDepth = derive2 { name="mrfDepth"; version="1.0.13"; sha256="177331j30n707mcl1ghxjc53xjs9qsal15kccc71b0rabkjdq2wv"; depends=[abind geometry ggplot2 matrixStats Rcpp RcppArmadillo RcppEigen reshape2]; }; mrfse = derive2 { name="mrfse"; version="0.2"; sha256="1dx21m54jsprlngj20q1bgvbw1bbm0sm8i01xanj68bx796ng14j"; depends=[]; }; @@ -12922,6 +12961,7 @@ in with self; { mstDIF = derive2 { name="mstDIF"; version="0.1.6"; sha256="0zhslqzvvk8wbgqvcipmzhy94awwfmkv5yfl812m8wmwgpkcqzpb"; depends=[eRm expm Matrix mirt PP scDIFtest]; }; mstR = derive2 { name="mstR"; version="1.2"; sha256="0v8cv9pswkvw0lva6jx5vavsb20dawgq83gn4rgydyhvigcl5szd"; depends=[]; }; mstate = derive2 { name="mstate"; version="0.3.2"; sha256="054dzrd5b0xjjjl7862q3aq1jwgrxbkqz7zpvbdirqsld3zksirw"; depends=[data_table lattice RColorBrewer rlang survival viridisLite]; }; + mstclustering = derive2 { name="mstclustering"; version="1.0.0.0"; sha256="1m2hmjia3r5ph5zl2314kq8dmjggzvw3ad8cixjjd70hi8570fpw"; depends=[data_table reshape2]; }; mstherm = derive2 { name="mstherm"; version="0.4.7"; sha256="04jrp0w17svwmrvx356jmh04npbwhk9nvfy3r39vqr82yrvn6jip"; depends=[doParallel foreach nls2 plotrix RColorBrewer]; }; mstknnclust = derive2 { name="mstknnclust"; version="0.3.1"; sha256="0bg38gnaf2jjva8l2wk862ch2cpqvw7szvvvpb2bnz02fp795p3g"; depends=[igraph]; }; mstrio = derive2 { name="mstrio"; version="11.3.0.1"; sha256="1qjqxrgy2amm0ikfixkqjix3d6jzh1y3abnbzq41ibl5qiz8pjxy"; depends=[crul data_table httr jsonlite openssl R6 rstudioapi shiny shinyjs]; }; @@ -12961,6 +13001,7 @@ in with self; { multiPIM = derive2 { name="multiPIM"; version="1.4-3"; sha256="0j7d0cgs8zcyiyibzmfhcandad76sf4gm57wkcv98bf96wkls58l"; depends=[lars penalized polspline rpart]; }; multiRDPG = derive2 { name="multiRDPG"; version="1.0.1"; sha256="0r6n148pakixw4caj0zwib8zirgl98lm0mxqmhvmqjh389icskxc"; depends=[]; }; multiROC = derive2 { name="multiROC"; version="1.1.1"; sha256="15ydbxpkdyvsc55di13jvwh9p6dzxc1yj93w1cwsd8jp2y10wsd3"; depends=[boot magrittr zoo]; }; + multiUS = derive2 { name="multiUS"; version="1.1.0"; sha256="077qyqfbp2r5ah08biiswn4jg03h2jcvi0gij6h5wip16vr0d0yx"; depends=[gplots MASS]; }; multiband = derive2 { name="multiband"; version="0.1.0"; sha256="1f4gmy0yf9zid7kl05zncvvig6hs4nl1h9wkrkc24rxx9risw9k9"; depends=[]; }; multibiplotGUI = derive2 { name="multibiplotGUI"; version="1.0"; sha256="0ig7r4p8mq594cjwclbqwjk8saqkvjqjbbnnxj1hc1sdj7qdlcpf"; depends=[cluster dendroextras Matrix rgl shapes tcltk2 tkrplot]; }; multiblock = derive2 { name="multiblock"; version="0.8.1"; sha256="1c7k5qkzh638xi07yknzjycsadkcnlrb6sdgq44nakna8ax4kdr2"; depends=[ade4 car FactoMineR geigen knitr lme4 MASS mixlm plotrix pls plsVarSel pracma progress r_jive Rcpp RcppEigen RegularizedSCA RGCCA RSpectra SSBtools]; }; @@ -12973,7 +13014,7 @@ in with self; { multicon = derive2 { name="multicon"; version="1.6"; sha256="16glkgnm4vlpxkhf1xw1gl1q10yavx9479i21v29lldag35z8pqx"; depends=[abind foreach mvtnorm psych sciplot]; }; multicool = derive2 { name="multicool"; version="0.1-12"; sha256="0djacq0irfqz4nlnx238kja73yvr1n5qybbfyl6bw1n6qgcjhza8"; depends=[Rcpp]; }; multicross = derive2 { name="multicross"; version="2.1.0"; sha256="17hk03wsms9ij6hp6dw77cvvngdb5i66is6pcl1q21pyp327zqi6"; depends=[crossmatch MASS Matrix nbpMatching]; }; - multid = derive2 { name="multid"; version="0.3.0"; sha256="1wpbb8npxns8wiwszb10hzy6i2nc7vsqi18n6zx5qi4mxhhad2mh"; depends=[dplyr emmeans glmnet lavaan pROC]; }; + multid = derive2 { name="multid"; version="0.4.0"; sha256="14vp8k1iwn0s97p877bwzc4ng12kdhcr1zs3w35aaypa5d2khsyx"; depends=[dplyr emmeans glmnet lavaan lme4 pROC]; }; multidplyr = derive2 { name="multidplyr"; version="0.1.1"; sha256="1cc8p9l6nn6n3dvivqyn8pwj0wn2vz40jcbb38zkg109a4c06jbb"; depends=[callr crayon dplyr magrittr qs R6 rlang tibble tidyselect vctrs]; }; multifamm = derive2 { name="multifamm"; version="0.1.1"; sha256="09s6hnyi5x48yp97499zai7b959ylkk17zbbc6d8a71ynvfas8ir"; depends=[data_table funData MFPCA mgcv sparseFLMM zoo]; }; multifear = derive2 { name="multifear"; version="0.1.2"; sha256="15nxyb17qzwld3ngw5k60nsr5nnam09jc1ky87rvsvslj6f3v696"; depends=[BayesFactor bayestestR bootstrap broom dplyr effectsize effsize esc ez forestplot ggplot2 nlme purrr reshape2 stringr tibble]; }; @@ -12983,21 +13024,23 @@ in with self; { multigraphr = derive2 { name="multigraphr"; version="0.1.0"; sha256="018kwpphwkpm07by7pvrwp5wvrasnpaxbs67pdrbfxzc139d15q9"; depends=[]; }; multigroup = derive2 { name="multigroup"; version="0.4.5"; sha256="1d3m2c3md9iiv1gfqfyik1xj3fsas85bmf2vbkaks8ljxa42f55k"; depends=[MASS]; }; multilaterals = derive2 { name="multilaterals"; version="1.0"; sha256="11zfdhn6qzqz0n31g23bn40wnfzkjndb753iiqvihirphzb74v5v"; depends=[ape igraph]; }; - multilevel = derive2 { name="multilevel"; version="2.6"; sha256="19zrvpq23dn69d7kai1rgw5b8ibmgybnbg6isliq0n8bv9jvrzia"; depends=[MASS nlme]; }; + multilevel = derive2 { name="multilevel"; version="2.7"; sha256="0ds7q3q2ncldb4iik24xisyxyyv1yv8l1yz7zd7cy036bna1yp5i"; depends=[MASS nlme]; }; multilevelPSA = derive2 { name="multilevelPSA"; version="1.2.5"; sha256="0926jaicdxk846vyfphb2hyg3zan3wal44x1bwamws0zf4flc4hj"; depends=[ggplot2 MASS party plyr PSAgraphics psych reshape xtable]; }; multilevelTools = derive2 { name="multilevelTools"; version="0.1.1"; sha256="01fzx7j0mkb4fr7axv34184w6w5nfsdcr51nscci1mi5b2805x1s"; depends=[cowplot data_table extraoperators ggplot2 JWileymisc lavaan lme4 lmerTest nlme zoo]; }; - multimark = derive2 { name="multimark"; version="2.1.3"; sha256="13arvjxfnxq7dr5r8cqwxxkravwwf4dq5hq263ss353fdi2qv4i0"; depends=[Brobdingnag coda Matrix mvtnorm prodlim raster RMark sp statmod]; }; + multilinguer = derive2 { name="multilinguer"; version="0.2.2"; sha256="1i8c3sz6h42nca13ycjkmsmjbg8lj1xhkvyga97lp2wgkrrywpwb"; depends=[askpass rappdirs sys usethis]; }; + multimark = derive2 { name="multimark"; version="2.1.4"; sha256="1x194h1jzxm3va933vqqk0qdg7pgrc5hqwdd1bwh0sjavygwanqz"; depends=[Brobdingnag coda Matrix mvtnorm prodlim raster RMark sp statmod]; }; multimode = derive2 { name="multimode"; version="1.5"; sha256="0qxb67qss2pmid0wiwblqng5qmihqchdhbkyjklgj20pvbjz1wjm"; depends=[diptest ks rootSolve]; }; multimorbidity = derive2 { name="multimorbidity"; version="0.5.0"; sha256="1x4869pqckldx6g4zhawjbin03glkxzfszb4qiq7yy2xi444jkl0"; depends=[devtools dplyr lubridate magrittr rlang sqldf stringr tidyr tidyselect tidyverse]; }; multinbmod = derive2 { name="multinbmod"; version="1.0"; sha256="1c4jyzlcjkqdafj9b6hrqp6zs33q6qnp3wb3d7ldlij7ns9fhg71"; depends=[]; }; multinet = derive2 { name="multinet"; version="4.0.1"; sha256="0j4hdw47vf5rkd4vqr6bs5740h17kvw7208a434q0ms2vlmm40cg"; depends=[igraph RColorBrewer Rcpp]; }; multinets = derive2 { name="multinets"; version="0.2.2"; sha256="1i5jsq1xy0g0l5d1z3hz4gj6inj4rhd6lf2s5xzd5k8ccp5aba8c"; depends=[igraph Rcpp]; }; - multinma = derive2 { name="multinma"; version="0.4.1"; sha256="02mk8z3dca32ap8ijs3f9jyqlf6wakbzc3ym5kj0g4axxivj5dhw"; depends=[bayesplot BH copula dplyr forcats ggdist ggplot2 ggraph glue igraph Matrix purrr randtoolbox Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools StanHeaders stringr tibble tidyr truncdist]; }; + multinma = derive2 { name="multinma"; version="0.4.2"; sha256="128p2a20kcdkqv9zq4i9hiy9fyqasmrfz162yz00fmyxkp50g63a"; depends=[bayesplot BH copula dplyr forcats ggdist ggplot2 ggraph glue igraph Matrix purrr randtoolbox Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools StanHeaders stringr tibble tidyr truncdist]; }; multinomRob = derive2 { name="multinomRob"; version="1.8-6.1"; sha256="1fdjfk77a79fy7jczhpd2jlbyj6dyscl1w95g64jwxiq4hsix9s6"; depends=[MASS mvtnorm rgenoud]; }; + multinomineq = derive2 { name="multinomineq"; version="0.2.3"; sha256="0hf3sv8gmdga7grina97wsya3d1cvb63h2j0sv6s10k9ccpv0ysn"; depends=[coda quadprog Rcpp RcppArmadillo RcppProgress RcppXPtrUtils Rglpk]; }; multipanelfigure = derive2 { name="multipanelfigure"; version="2.1.2"; sha256="0cm5bd7k0fx6d3gybcll6vvh14byanyk6dj4civqij7psa48iagc"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types ggplot2 gridGraphics gtable magick magrittr stringi]; }; multipleNCC = derive2 { name="multipleNCC"; version="1.2-2"; sha256="0bnc14l5b3x68qnwf3ma8wrclmp6n7fxsc0sbd7cfaayhp8dzcb1"; depends=[mgcv survival]; }; multiplestressR = derive2 { name="multiplestressR"; version="0.1.1"; sha256="167ch16bdlk4syjbgn1149q1np90w6299ph35p9npdh1zcynm95f"; depends=[ggplot2 patchwork viridis]; }; - multiplex = derive2 { name="multiplex"; version="2.9.7"; sha256="0l6ag5d1gr7jvvjs8wq234vylvhav13wd29crx7axckd5jgx2k0h"; depends=[]; }; + multiplex = derive2 { name="multiplex"; version="2.9.8"; sha256="1rc5jj92s3dkkqp2aa833zn16g0h3nl4qk3vwqg5a08rqk5qyi87"; depends=[]; }; multipol = derive2 { name="multipol"; version="1.0-7"; sha256="1rkrg3kayxa05jayg8bk1mm3hcvi76570wqfja5953hd9j4krgha"; depends=[abind]; }; multirich = derive2 { name="multirich"; version="2.1.3"; sha256="1vv4jhhq46wp6znfv9c47q9z4smn1c560wnbp77qfhiix098wzfj"; depends=[]; }; multiridge = derive2 { name="multiridge"; version="1.9"; sha256="1z77gabrm8dpyp4fssh1rqw58y1fspp5ypv2xybwr7k3fbvyd1vg"; depends=[mgcv pROC risksetROC snowfall survival]; }; @@ -13020,8 +13063,9 @@ in with self; { mumm = derive2 { name="mumm"; version="0.2.1"; sha256="1wjg2pqn2wb9hk9mqgpi3k26qwjnkmp4apx09lxcwrz35bbwhfzv"; depends=[lme4 Matrix Rcpp RcppEigen stringr TMB]; }; munfold = derive2 { name="munfold"; version="0.3.5"; sha256="17zizx9r0f8dxb7dkgn1nn0fp7ydy6r155p1zfz0v93jc26lc1hb"; depends=[MASS memisc]; }; munsell = derive2 { name="munsell"; version="0.5.0"; sha256="16g1fzisbpqb15yh3pqf3iia4csppva5dnv1z88x9dg263xskwyh"; depends=[colorspace]; }; - munsellinterpol = derive2 { name="munsellinterpol"; version="2.7-1"; sha256="13b8bac9z1zg4qxf1fphwx2dx29p6znzd9pyw1i76h2ccpyxbsl5"; depends=[rootSolve spacesRGB spacesXYZ]; }; + munsellinterpol = derive2 { name="munsellinterpol"; version="2.8-2"; sha256="0ypvlfzvy0kv9ih0w0h5f5jnljlhgp7nj08rlp6hafajbhqp6k1y"; depends=[rootSolve spacesRGB spacesXYZ]; }; murphydiagram = derive2 { name="murphydiagram"; version="0.12.2"; sha256="0f699cdfsl4f9w9f18cxkdlq1vyhsv83ynl6ck0r3wwh8f1zsmnd"; depends=[]; }; + musclesyneRgies = derive2 { name="musclesyneRgies"; version="1.1.3"; sha256="12cmxavj6k08pbk0ywmip1wph5jgq9y1ghj0dwq177sf8icmy9l6"; depends=[FNN ggplot2 gridExtra gtools plyr proxy reshape2 signal umap]; }; music = derive2 { name="music"; version="0.1.1"; sha256="04ygmlga7i8bpxcrlmj8wc956asf73krghga6fnh2flm675dp42f"; depends=[audio crayon]; }; musicNMR = derive2 { name="musicNMR"; version="0.0.2"; sha256="09xxc78ajk428yc3617jfxqp5fy89nfc24f1rig6cw28fflwqj0k"; depends=[seewave]; }; musica = derive2 { name="musica"; version="0.1.3"; sha256="0cfzfar706l0xdb0n11m18mayj5rrplvf4qry36vgxsiaxcba90r"; depends=[data_table lubridate magrittr qmap]; }; @@ -13041,12 +13085,13 @@ in with self; { mvQuad = derive2 { name="mvQuad"; version="1.0-6"; sha256="016477dhjdkqiadc631vzpbp967mn4yli6by3s1k348mlfirwsi3"; depends=[data_table statmod]; }; mvSLOUCH = derive2 { name="mvSLOUCH"; version="2.7.3"; sha256="1f048j48mv654n8yswvlj9q4rr2kpyi4b4mibg28cspayidq9yyc"; depends=[abind ape Matrix matrixcalc mvtnorm ouch PCMBase TreeSim]; }; mvShapiroTest = derive2 { name="mvShapiroTest"; version="1.0"; sha256="0zcv5l28gwipkmymk12l4wcj9v047pr8k8q5avljdrs2a37f74v1"; depends=[]; }; - mvabund = derive2 { name="mvabund"; version="4.1.12"; sha256="107pwv2bwird1a98chcnbld2wqj9prkf4pkncyrrp304zpdkkby1"; depends=[MASS Rcpp RcppGSL statmod tweedie]; }; + mvabund = derive2 { name="mvabund"; version="4.2.1"; sha256="01kss9dx4an1ir5zs46jypvhj8sdc8wcs00i1223ai09av4lcsgd"; depends=[MASS Rcpp RcppGSL statmod tweedie]; }; mvbutils = derive2 { name="mvbutils"; version="2.8.232"; sha256="0awd0jy492ha321c20kmmgl20kqphdmrmswakc0rq6h8z9d55kdg"; depends=[]; }; - mvc = derive2 { name="mvc"; version="1.3"; sha256="0kmh6vp7c2y9jf71f4a29b0fxcl0h7m4p8wig4dk3fi7alhjf7ym"; depends=[rattle]; }; + mvc = derive2 { name="mvc"; version="1.3"; sha256="0kmh6vp7c2y9jf71f4a29b0fxcl0h7m4p8wig4dk3fi7alhjf7ym"; depends=[]; }; mvcluster = derive2 { name="mvcluster"; version="1.0"; sha256="0yfl31scdgsiljvpv1yxc5bwwzr6kbhpjwqh2kql7xf0m0hc1pr4"; depends=[Rcpp RcppArmadillo]; }; mvctm = derive2 { name="mvctm"; version="1.2"; sha256="0810bmk748cvbls4djspqvkk65j605djqicqg4rkwy2a799l3rgc"; depends=[Formula MNM nlme quantreg Rfit SpatialNP]; }; mvdalab = derive2 { name="mvdalab"; version="1.6"; sha256="0i4hhm9bkp13j8cy6fspdn619d00jh615njwr49rwzgjyj418k6l"; depends=[car dummies ggplot2 MASS moments penalized plyr reshape2 sn]; }; + mvgb = derive2 { name="mvgb"; version="0.0.1"; sha256="0rp9z6zp2nl09aq1xxq08h23zb5pidxjq0byryf3vy72ldq7y72c"; depends=[mvtnorm]; }; mvglmmRank = derive2 { name="mvglmmRank"; version="1.2-2"; sha256="00zxqby8syb959fqgw9i7b0yamgjwddq32jlin6qmnzys5bg1556"; depends=[MASS Matrix numDeriv]; }; mvinfluence = derive2 { name="mvinfluence"; version="0.8-3"; sha256="0nygsldkm61ny5ljcc1r667rywj239j4x59ssi81cb2005kkjgm5"; depends=[car heplots]; }; mvmesh = derive2 { name="mvmesh"; version="1.6"; sha256="1y6p7xp9fv0xswjdc6py1xqlx1ys1iyr559s9wkyja4hzcpya2my"; depends=[abind geometry rcdd rgl SimplicialCubature]; }; @@ -13069,11 +13114,11 @@ in with self; { mvtsplot = derive2 { name="mvtsplot"; version="1.0-1"; sha256="0g5grrha77rsnkfasw5pxnpmkl7vgb728ms8apyg8xnbmgilg9vv"; depends=[RColorBrewer]; }; mwTensor = derive2 { name="mwTensor"; version="0.99.5"; sha256="11zn2g1gxl1x6ci3wqkr7a37jwc4rdcbgdagy5gf3jgkmmr5an3w"; depends=[ccTensor ica igraph MASS nnTensor rTensor]; }; mwa = derive2 { name="mwa"; version="0.4.3"; sha256="100d3c1070ir64iv848kws5fna141gcq5p66ip873cr632a042qs"; depends=[cem MASS rJava]; }; - mwaved = derive2 { name="mwaved"; version="1.1.8"; sha256="092sqd9harx289bgghw9x495llzhab0vkgkjka5jhi4ad1rfk3vh"; depends=[Rcpp shiny]; }; mwcsr = derive2 { name="mwcsr"; version="0.1.2"; sha256="1s7l3id3yashmscdd1kdcw1i4agpd6z12c7wxj18h3g2c82s7ad6"; depends=[igraph Rcpp]; }; mwshiny = derive2 { name="mwshiny"; version="2.1.0"; sha256="0c1a0d9qnaszffhzanmk31mdxqi7j3rn6bk7a3dwg4bq1da3rlgl"; depends=[htmltools shiny]; }; - mxkssd = derive2 { name="mxkssd"; version="1.1"; sha256="0m9763dqrk8qkrvp18bsv96jv0xhc2m8sbxdk6x3w6kdjcl663p2"; depends=[]; }; + mxkssd = derive2 { name="mxkssd"; version="1.2"; sha256="19zz5y5gz84a7qicaj3v2j6l558vr6w8lcy67b3kmkq64mnnirda"; depends=[]; }; mxmmod = derive2 { name="mxmmod"; version="1.1.0"; sha256="0x4m6y4ngb3vm9xpvwvn1zcbch2fhz8pb267hg2sb3kk5m504xxq"; depends=[OpenMx]; }; + mxnorm = derive2 { name="mxnorm"; version="1.0.1"; sha256="0crqzbxvb459pzi6znhm06irfs09f1nsy0r1lnglzi7v1r5sh9n0"; depends=[caret data_table dplyr e1071 fda fossil ggplot2 glue KernSmooth kSamples lme4 magrittr psych reticulate rlang stringr tidyr uwot]; }; myTAI = derive2 { name="myTAI"; version="0.9.3"; sha256="0fd6srvwzqir8zif56cnyi02c952fgc67xzc17wn7xvmvljfvh4x"; depends=[cpp11 doParallel dplyr edgeR fitdistrplus foreach ggplot2 gridExtra nortest RColorBrewer Rcpp RcppArmadillo readr reshape2 scales taxize tibble]; }; mycobacrvR = derive2 { name="mycobacrvR"; version="1.0"; sha256="1xd9ackzdd8db6bayza0bg4n256mi9rdqih0cdc0nl212c3iz75g"; depends=[]; }; mycor = derive2 { name="mycor"; version="0.1.1"; sha256="00hqmvga22bv43833s974s7ky7lbry3r2bb5kza7kvkn1p6773rg"; depends=[lattice]; }; @@ -13086,7 +13131,7 @@ in with self; { nFCA = derive2 { name="nFCA"; version="0.3"; sha256="1jyyzagmppm3i7vh3ia4ic0zql1w04f66z81v0zpdihd4cbl5ra7"; depends=[]; }; nFactors = derive2 { name="nFactors"; version="2.4.1"; sha256="1diybai7pwaj9adn60b7nhvvpjjkwg3jimwp2ahgca9askmv93h2"; depends=[lattice MASS psych]; }; nJira = derive2 { name="nJira"; version="0.1.1"; sha256="0vh167kxljp68f0dx307wl6fp8nlp34vgrkr815z30mhx03p8j9r"; depends=[httr plyr rjson]; }; - nLTT = derive2 { name="nLTT"; version="1.4.3"; sha256="0gpmlvam7k4gsiidblfl4f57mgkbq2pakzqak4yx4pxa9f8gpilm"; depends=[ape coda deSolve testit]; }; + nLTT = derive2 { name="nLTT"; version="1.4.6"; sha256="1w073m8pq9372y1df5w77ghqsf0pyhld6hkpwf18bzwdr57nzr64"; depends=[ape coda testit]; }; nVennR = derive2 { name="nVennR"; version="0.2.3"; sha256="035gblc8427v0vq288rib3jfpz5fmcpvqg6nfaijwmbkz3gd41b6"; depends=[Rcpp]; }; na_tools = derive2 { name="na.tools"; version="0.3.1"; sha256="1lbzsckfg297n85kzbin65x1l6qgg9l50hd3xi2gflxc7n2xb8bw"; depends=[]; }; naaccr = derive2 { name="naaccr"; version="1.0.0"; sha256="1hw74a2gjm3gxq0s0qlndhqw0vij6p31walz1ic741z7hqsffqq7"; depends=[data_table stringi]; }; @@ -13098,21 +13143,20 @@ in with self; { naivereg = derive2 { name="naivereg"; version="1.0.5"; sha256="1cxfl419pp7xh1xrad29gvpn6hm0rhk40vylj97ypndh6gmnynzz"; depends=[glmnet gmm grpreg ncvreg]; }; nakagami = derive2 { name="nakagami"; version="1.1.0"; sha256="0bxsg5k51x7qrw34l16da79ck212drkgvzgn9d5zanx5dwv5asl2"; depends=[assertthat]; }; namedCapture = derive2 { name="namedCapture"; version="2020.4.1"; sha256="0zdw3h3n4qjv9cpidb3g523ld6rrh49l2c1yhfqhk5wb7vddrs46"; depends=[]; }; - namedropR = derive2 { name="namedropR"; version="2.2.1"; sha256="1svwpv7q0jbjikx81j3g75i2gwil4q4rqxhyd5w7ylqc633yjgji"; depends=[bib2df dplyr here htmltools lubridate qrcode readr webshot]; }; - namer = derive2 { name="namer"; version="0.1.5"; sha256="1687x6rc46bp2bmqkixzry5cc7lxjqwjk8ngrbg2fk7mzb4pwvnq"; depends=[dplyr fs glue magrittr purrr rstudioapi tibble]; }; + namedropR = derive2 { name="namedropR"; version="2.2.3"; sha256="08280hsb23pvjr0zrgfjmgmr4jiasrv0lbkjp92lwhkaljlhrpfy"; depends=[bib2df dplyr here htmltools lubridate qrcode readr webshot]; }; namespace = derive2 { name="namespace"; version="0.9.1"; sha256="1bsx5q19l7m3q2qys87izvq06zgb22b7hqblx0spkvzgiiwlq236"; depends=[]; }; nametagger = derive2 { name="nametagger"; version="0.1.1"; sha256="17g8y7x83p1pkgj5hgildndchxsp70va25h93p7r1yjllm56zqv8"; depends=[Rcpp]; }; nandb = derive2 { name="nandb"; version="2.1.0"; sha256="1rbn4nibjzvwpccpmqn84w9a167f1avyl18kjlapy5dhafvixgbz"; depends=[assertthat autothresholdr BBmisc checkmate detrendr dplyr filesstrings ggplot2 glue ijtiff magrittr purrr Rcpp reshape2 rlang stringr viridis withr]; }; naniar = derive2 { name="naniar"; version="0.6.1"; sha256="0l3l2x85v3srilww483kpgp4zlwixyml257b0cqly8kcpwawlinm"; depends=[dplyr forcats ggplot2 glue magrittr norm purrr rlang tibble tidyr UpSetR viridis visdat]; }; - nanonext = derive2 { name="nanonext"; version="0.1.0"; sha256="0bilvm2sw5hmp39pgjj7sd8k90knmad5b9mlml3jgqx27cvsgmab"; depends=[]; }; + nanonext = derive2 { name="nanonext"; version="0.2.0"; sha256="04r119v74i1wymhdyjjcdybjvd7i5fhx8n8zq233iq7rrszcr8cd"; depends=[]; }; nanop = derive2 { name="nanop"; version="2.0-6"; sha256="007gdc93pk0vpfmsw7zgfma2k1045n2cxwwsyy276smy0ys9fdhp"; depends=[distrEx rgl]; }; nanostringr = derive2 { name="nanostringr"; version="0.2.0"; sha256="13rcc33zfqlx8m5bmr5hh87gp0g5wlg2cwlj1683kw9adj2y3fdf"; depends=[assertthat ccaPP dplyr epiR magrittr purrr rlang]; }; - nanotime = derive2 { name="nanotime"; version="0.3.5"; sha256="1813740pjm4h27xhyipw58f4049qb49840axhnjcxfjjhkjsmpj4"; depends=[bit64 Rcpp RcppCCTZ RcppDate zoo]; }; + nanotime = derive2 { name="nanotime"; version="0.3.6"; sha256="1pv8hlw76n7qqrmw9lirjgg0zlp7ffy367ndca3sra8wn5f1lxfz"; depends=[bit64 Rcpp RcppCCTZ RcppDate zoo]; }; naptime = derive2 { name="naptime"; version="1.3.0"; sha256="1cadfv5sdsmz61kf96hf2gbnghf24q40g5c3h9b8prvkxslap691"; depends=[lubridate]; }; nardl = derive2 { name="nardl"; version="0.1.6"; sha256="1vf8im4zs4j0v3k617aaskq9n2fg8sn3j5bllcbz2ircrpijr21m"; depends=[car Formula gtools MASS strucchange tseries]; }; narray = derive2 { name="narray"; version="0.4.1.1"; sha256="1xyyn6v3khk5x759fr9h96z036hbb87fzfqgdpw907bc95gjnkz9"; depends=[progress stringr]; }; nasadata = derive2 { name="nasadata"; version="0.9.0"; sha256="0y88qdy8c1y0prsajxic5vdqfixv9knjsbhw3vbfac8wv3a69bjl"; depends=[dplyr jsonlite plyr png]; }; - nasapower = derive2 { name="nasapower"; version="4.0.4"; sha256="16cigpzfsw3w7hnq561w6243lhcpk1z4cr9plf7i9yyz09l8l4p5"; depends=[crul jsonlite lubridate readr tibble]; }; + nasapower = derive2 { name="nasapower"; version="4.0.6"; sha256="0pz0v4waipd52saq92fws1xlh3fcal1q4dpcdspnp78n6z3nsxjc"; depends=[crul jsonlite lubridate readr tibble]; }; nasaweather = derive2 { name="nasaweather"; version="0.1"; sha256="05pqrsf2vmkzc7l4jvvqbi8wf9f46854y73q2gilag62s85vm9xb"; depends=[]; }; naspaclust = derive2 { name="naspaclust"; version="0.2.1"; sha256="1p4ilv2z5140h4kdix2w1v32vz1n8v33wq0fhc8n8mi7baknhd1i"; depends=[beepr rdist Rdpack stabledist]; }; nat = derive2 { name="nat"; version="1.8.18"; sha256="0sbyd16109nbi20fk4fwjz0p9hva8pbn370a60wjwjgn9jd90b90"; depends=[digest filehash igraph nabor nat_utils plyr rgl yaml]; }; @@ -13126,17 +13170,18 @@ in with self; { naturaList = derive2 { name="naturaList"; version="0.4.2"; sha256="03a5gbp5hv93p6y9ribagzs5q94c5v54j20zmg306irnp8n58iqy"; depends=[dplyr fasterize htmltools leaflet leaflet_extras magrittr raster rlang sf shiny shinydashboard shinyWidgets sp stringr tidytext vegan]; }; natural = derive2 { name="natural"; version="0.9.0"; sha256="0zxwbf3gg2h0bhl2w0md3rd162vlsgg0dv3187hc0ax7333cc4cx"; depends=[glmnet Matrix]; }; naturalsort = derive2 { name="naturalsort"; version="0.1.3"; sha256="0mz801y9mzld9ypp3xmsjw2d8l9q97sdnv09wrci9xi3yg2sjf6d"; depends=[]; }; - navigatr = derive2 { name="navigatr"; version="0.1.0"; sha256="1q421jflgjxasyzaa7dxpars8jzlprqsrzn9c6yfsh7bzngb95vz"; depends=[cli dplyr pillar purrr rlang tibble tidyselect vctrs]; }; + navigatr = derive2 { name="navigatr"; version="0.1.1"; sha256="0yy3vj3r7lgi9k930nb8cnlrwcc0vg73szkdcmmsy8bj98d0gb3s"; depends=[cli dplyr pillar purrr rlang tidyselect vctrs]; }; nawtilus = derive2 { name="nawtilus"; version="0.1.4"; sha256="1agqx9wiiypkpjrwahwlw5qkvqgkh01swyzc75csf9698x0779pm"; depends=[MASS]; }; nbTransmission = derive2 { name="nbTransmission"; version="1.1.2"; sha256="0vaj2zfyvm2vm1ly1419ysxxrqkv73802n96ifajknh1pair31zk"; depends=[caret dplyr lubridate poisbinom rlang tidyr]; }; nbapalettes = derive2 { name="nbapalettes"; version="0.1.0"; sha256="1wrh2qcm90fcybhcc8wvs2s4a4z8y3mrhc28dvrkwynqwzsbalzs"; depends=[dplyr]; }; nbconvertR = derive2 { name="nbconvertR"; version="1.3.2"; sha256="0yhmz177r1miain65vspclahhz8cg7638ldbpsw8ylgf7a60l0sg"; depends=[]; }; nberwp = derive2 { name="nberwp"; version="1.1.0"; sha256="0wy3n8p16l7x2hf35k3r7apxm72k38nmc407vh883jg5fci41ljn"; depends=[]; }; - nbody = derive2 { name="nbody"; version="1.30"; sha256="1wmaxh5k0c1zwvjwabm9qs8vn94vvsx4h14as6sspblcgpva96v6"; depends=[magicaxis Rcpp]; }; + nbfar = derive2 { name="nbfar"; version="0.1"; sha256="1gr9q83ff950x2lcyv9apsnjah4kpi8805mci9m0s3gvr7llpjq4"; depends=[glmnet magrittr MASS mpath Rcpp RcppArmadillo RcppParallel rrpack]; }; + nbody = derive2 { name="nbody"; version="1.31"; sha256="0a5lqpbmb4gqb4mgp9hqc2fz92x9aaiqfqas1xxry7jvjngby30n"; depends=[magicaxis Rcpp]; }; nbpMatching = derive2 { name="nbpMatching"; version="1.5.1"; sha256="0f90k9vq05gkc0sgywb98frig63df0ih4z41dq7m2inx1zk5rqns"; depends=[Hmisc MASS]; }; nc = derive2 { name="nc"; version="2020.8.6"; sha256="19qsa5k38ajsbigccpch05m156n5wnd7c54j09fanjrpzy2048w2"; depends=[data_table]; }; ncappc = derive2 { name="ncappc"; version="0.3.0"; sha256="0bf00iskrd3x43839bwn957mi3qvm2dhcmqa7hl1ib0gp2r1cnzx"; depends=[bookdown Cairo dplyr ggplot2 gridExtra gtable knitr lazyeval magrittr PopED purrr readr reshape2 rlang rmarkdown scales tibble tidyr xtable]; }; - ncar = derive2 { name="ncar"; version="0.4.4"; sha256="1b37isgj7njpyh3js2kyl6vil9v8azh7n04m5yn4pcvyz02sqkx8"; depends=[NonCompart rtf]; }; + ncar = derive2 { name="ncar"; version="0.4.5"; sha256="1ymxb3av7vd7vljr8h3ga6v01z6nf5j9mc095z0hi31d1khwrd02"; depends=[NonCompart rtf]; }; ncbit = derive2 { name="ncbit"; version="2013.03.29"; sha256="0f07h8v68119rjvgm84b75j0j7dvcrl6dq62vp41adlm2hgjg024"; depends=[]; }; ncdf4 = derive2 { name="ncdf4"; version="1.19"; sha256="0qzvin2fjzcb7h2knlnw14s6043pwi1nm7yf6p27ax7w269173fb"; depends=[]; }; ncdf4_helpers = derive2 { name="ncdf4.helpers"; version="0.3-6"; sha256="0qnm41rbxb6v7aqh1mdkjhcc2rhs4wg6wmrllldzd99mzz8slv1r"; depends=[abind ncdf4 PCICt]; }; @@ -13151,9 +13196,11 @@ in with self; { ndjson = derive2 { name="ndjson"; version="0.8.0"; sha256="0lvzbgfi1sg4kya1mvv67z14qk3vz9q57x22qh57xq8ampdkg812"; depends=[data_table Rcpp tibble]; }; ndl = derive2 { name="ndl"; version="0.2.18"; sha256="0b235v6jf98rrqp5aqw3jkk7mq8dbqmhb758zbzza1mavh4n2k7s"; depends=[Hmisc MASS Rcpp]; }; ndtv = derive2 { name="ndtv"; version="0.13.2"; sha256="0symd0rwzk8kcq7f0flbw3pnyigybgsypjaaq5b5p1pjm1dz0c8j"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; }; + ndvtest = derive2 { name="ndvtest"; version="1.0-0"; sha256="15jqh58n63g2vr919z10d5ryhvk7325bv4gmd2xgdpi76p2dbyg0"; depends=[CompQuadForm nonnest2 Rdpack sandwich]; }; neariso = derive2 { name="neariso"; version="1.0.1"; sha256="1b2gnws75kkqsi8mg9n0zzdaawx57a6zz47cswabj5m6nb09ikh8"; depends=[]; }; neat = derive2 { name="neat"; version="1.2.3"; sha256="0mdv47l50wzxnjfk1sway7gzpkyf57svqip16fqn0hrc1fsrifbn"; depends=[igraph]; }; neatRanges = derive2 { name="neatRanges"; version="0.1.3"; sha256="1zfp6f1q7m0bks0shvzr120nd5jxba28xhi7vrd55qfy7g72167g"; depends=[data_table Rcpp]; }; + neatStats = derive2 { name="neatStats"; version="1.10.1"; sha256="0miamjzk5sa0f76pgni2fx3sczd065axxc92dzphx66xczql98fw"; depends=[BayesFactor bayestestR car data_table Exact ez fBasics ggplot2 ggpubr logspline MBESS pROC viridis]; }; neatmaps = derive2 { name="neatmaps"; version="2.1.0"; sha256="1kz1na3fzpd8vkxmpp5rz8ksyf8q2wk456csiii82winv9a2zxc9"; depends=[ConsensusClusterPlus dplyr ggplot2 heatmaply igraph]; }; nebula = derive2 { name="nebula"; version="1.2.0"; sha256="1a4jsqxprp4pn7f5nxgha3jvjkcp7rdjlpcjwfc3f89530jhmnyv"; depends=[MASS Matrix nloptr Rcpp RcppEigen Rfast trust]; }; needmining = derive2 { name="needmining"; version="0.1.1"; sha256="0qsj0ihjchrnl4s44rpsizbcz033z00dmzvic2y1msv0bnfawl6p"; depends=[randomForest rtweet SnowballC SparseM stringr tau tm]; }; @@ -13171,7 +13218,7 @@ in with self; { nephro = derive2 { name="nephro"; version="1.2"; sha256="1izmzx8lah322xzb42asfnrvr2c9yqd0zf7fmrhwd3p4rr1rqa7d"; depends=[]; }; neptune = derive2 { name="neptune"; version="0.2.1"; sha256="1lnrhld77rq3s01fx4168a9ixmyxinpc32m0yyvzz5wk7bkx928s"; depends=[ggplot2 htmlwidgets plotly reticulate rstudioapi this_path]; }; nesRdata = derive2 { name="nesRdata"; version="0.3.1"; sha256="1lxvg11g8nizfn8sghirq2749fs9i4w1wiaz3v1djqbkzqcqfrcj"; depends=[dataone dplyr purrr rappdirs readr]; }; - nestfs = derive2 { name="nestfs"; version="1.0"; sha256="0lzbjj287s5kmw9635gfyl3jdgfh5mxbwxqxmnwynbwccixk0akc"; depends=[dgof pROC]; }; + nestfs = derive2 { name="nestfs"; version="1.0.1"; sha256="1y10plfiyv5ws4xpmwgvm77kp07525zv02rza08xm8qhyq4f64zc"; depends=[dgof pROC]; }; nestr = derive2 { name="nestr"; version="0.1.2"; sha256="0qgd1sl6x5y70r3l4vf0qqynlrkdyq7mmpb8mwjn7f1hjnym1gaj"; depends=[magrittr rlang tidyselect vctrs]; }; net4pg = derive2 { name="net4pg"; version="0.1.0"; sha256="0aqagzrycgm6qnappbgi6pin10gnf9h3gj39wnncdsb2nf417ynr"; depends=[data_table graph magrittr Matrix]; }; netClust = derive2 { name="netClust"; version="1.0.1"; sha256="1h58ispdx8ddsnqrrmcxn2rbqb0hb89gpjg4p14mr7vhxw5c9zva"; depends=[Rcpp RcppArmadillo]; }; @@ -13229,29 +13276,30 @@ in with self; { newsanchor = derive2 { name="newsanchor"; version="0.1.1"; sha256="1s8qhq9jk5gnsimnvy7kdayya0ks0ly309l7zxm5rafj5x7k5vwn"; depends=[askpass devtools httr jsonlite lubridate tidyr xml2]; }; newscatcheR = derive2 { name="newscatcheR"; version="0.1.0"; sha256="0rm91dfzfjhi51gk65gvq2z7aywg6y8ay3hrjnp6frlmyvh661sp"; depends=[tidyRSS]; }; newsmap = derive2 { name="newsmap"; version="0.7.4"; sha256="1k7jbfz3hrpy8z3zfn0gcm9fzmfiaf3qkx1m89c5q072zpdpiajn"; depends=[Matrix quanteda quanteda_textstats stringi]; }; - newsmd = derive2 { name="newsmd"; version="0.3.1"; sha256="0xgrxz0ppvja4avff2l4kjnbw90ynbrziih0iqfjsvnvy92msalg"; depends=[R6]; }; + newsmd = derive2 { name="newsmd"; version="0.4.0"; sha256="1pzsblkvs374nc6795llm9lbqj5z410g1mgr3q4fgpm0398zmsrv"; depends=[R6]; }; nfer = derive2 { name="nfer"; version="1.0.1"; sha256="1dbvadpfgwanfdc9kvm620r5nj7l9kvbbhfcg80z5jbdn38jgh3r"; depends=[]; }; nfl4th = derive2 { name="nfl4th"; version="1.0.1"; sha256="11hk9446ckhg46dzkbvd12n6k02m6qx265spwqdm23xpncamjlkk"; depends=[dplyr glue httr janitor jsonlite magrittr mgcv nflfastR nflreadr purrr stringr tibble tidyr tidyselect xgboost]; }; nflfastR = derive2 { name="nflfastR"; version="4.3.0"; sha256="1vg27m51q01m6rypaksr5dw7qg3i638dypm31v5gimbdkjmgs2j7"; depends=[cli curl dplyr fastrmodels furrr future glue janitor lifecycle mgcv nflreadr progressr rlang stringr tibble tidyr tidyselect xgboost]; }; nflplotR = derive2 { name="nflplotR"; version="1.0.0"; sha256="0jcj3jv7qsjn7nxs9rycqc039rcx69nznfv2adg4xv4ybw0s1q6s"; depends=[cli ggplot2 magick magrittr nflreadr rlang scales]; }; nflreadr = derive2 { name="nflreadr"; version="1.1.3"; sha256="1wif90lngvpzj36s7r1frchi50qksbsjscy156n740x2f3by9zjx"; depends=[cachem cli curl data_table glue memoise qs rappdirs Rcpp RcppParallel rlang]; }; nflseedR = derive2 { name="nflseedR"; version="1.0.2"; sha256="061jd3mr06mxs5riwlph3a1hsk5jypws71jy9jzhhqnijdy96bki"; depends=[cli crayon curl dplyr furrr future glue gsubfn magrittr progressr purrr readr rlang tibble tidyr]; }; - nflverse = derive2 { name="nflverse"; version="1.0.0"; sha256="0z2q49bm9fi3nwip7iyrgkyw8ppm3fhn1kxm1rryzn615050gj0q"; depends=[cli crayon magrittr nfl4th nflfastR nflplotR nflreadr nflseedR rlang rstudioapi]; }; + nflverse = derive2 { name="nflverse"; version="1.0.1"; sha256="1miacjvfl3968m54d6b5qgs7y3w6qw49nw96qxdwb2175gwhbl51"; depends=[cli crayon magrittr nfl4th nflfastR nflplotR nflreadr nflseedR rlang rstudioapi]; }; nftbart = derive2 { name="nftbart"; version="1.2"; sha256="18yca2qg6d2960yvnplf70a7kd61qhmp42rd3alhg901a8py6qk5"; depends=[nnet Rcpp survival]; }; + ngboostForecast = derive2 { name="ngboostForecast"; version="0.0.2"; sha256="1jh3acr2asc8ih7kv05z4n7ialvvbkg61w01n9avvvgjw9ifsf4x"; depends=[dplyr forecast magrittr R6 reticulate]; }; ngram = derive2 { name="ngram"; version="3.2.0"; sha256="1g57md4s73qpxzqxr8sgzvbkx3y4zmw4hfq6zsysnw4h2dbqxm1l"; depends=[]; }; ngramr = derive2 { name="ngramr"; version="1.7.5"; sha256="1zs6ninvhz6lavxnp59105wy0n0j839ps6yaaz21s42xk11lfp1k"; depends=[cli dplyr ggplot2 httr lifecycle RCurl rjson rlang scales stringr textutils tibble tidyr xml2]; }; ngramrr = derive2 { name="ngramrr"; version="0.2.0"; sha256="1p8s4p3h27g647rxx9qjfad5dzbngjbmvhw4gz0jbsmfqrsf72by"; depends=[tau tm]; }; ngspatial = derive2 { name="ngspatial"; version="1.2-2"; sha256="09hdvmbna4m62zv18k5kj9718wzw7p43wnal2j6aa0m5sd2rx9rz"; depends=[batchmeans Rcpp RcppArmadillo]; }; nhanesA = derive2 { name="nhanesA"; version="0.6.5.3"; sha256="00sfbzh7r2lvc19prjm3zfgs62j6frh5rw6jvb25z8wzrhw52z3f"; depends=[Hmisc magrittr plyr rvest stringr xml2]; }; nhdR = derive2 { name="nhdR"; version="0.5.7"; sha256="1nvnfkp60y317cgqpyxz6hbkqhm3xaicdicjljmb9hhqm04hbjp5"; depends=[curl dplyr foreign ggplot2 httr maps memoise purrr rappdirs rgdal rlang rvest sf stringr units xml2]; }; - nhdplusTools = derive2 { name="nhdplusTools"; version="0.4.3"; sha256="01462pmvmy8j3p5l9qdd6xdn1jv7gi9m1vn9mbcn0gmdkll888vd"; depends=[dataRetrieval dplyr fst httr igraph jsonlite magrittr pbapply prettymapr R_utils RANN rosm sf tidyr units xml2 zip]; }; + nhdplusTools = derive2 { name="nhdplusTools"; version="0.5.1"; sha256="0f0vph1931cdkh9kx4d4nm7nmj9rav99wlcd1l8684mb8l9p9z7c"; depends=[dataRetrieval dplyr fst httr jsonlite magrittr pbapply prettymapr R_utils RANN rosm sf tidyr units xml2 zip]; }; nhlapi = derive2 { name="nhlapi"; version="0.1.4"; sha256="1c5s7fd9agzk20xi8v38dk8ih6lmn8c90mxncyr996bhipgr7vl3"; depends=[jsonlite]; }; nhlscrape = derive2 { name="nhlscrape"; version="0.1.3"; sha256="0x6y747j6lha3jw4v2wavgd12xw5nx4m8biv9rmq9z0qy53vncjc"; depends=[DBI httr jsonlite RSQLite rvest xml2]; }; nhm = derive2 { name="nhm"; version="0.1.0"; sha256="1yf9hnbmfb7xj8mbhnq40wvd0pd88x9qspy1jr3x0n8nb75i3jlp"; depends=[deSolve maxLik mvtnorm]; }; nhs_predict = derive2 { name="nhs.predict"; version="1.4.0"; sha256="0lgyi1v940pjqfpwligw5ml6vagiz8wwsxbr9kfd1j70b5i0kjwd"; depends=[]; }; nhsnumber = derive2 { name="nhsnumber"; version="0.1.2"; sha256="10vm3591gjr13ggnagjkh0v2915yl05mwyphpckimmrrbc3zsdip"; depends=[]; }; nhstplot = derive2 { name="nhstplot"; version="1.1.0"; sha256="1yk7q731a4y9mhngdsb8xdw2id6m1q78329ja19hdpi6nnd7nhgn"; depends=[ggplot2]; }; - niaidMI = derive2 { name="niaidMI"; version="1.0.0"; sha256="0n7hhvcbnhzfvj3whvqd66bh4sbl70278qms9q8bzss6d0w2wp1k"; depends=[Rcpp]; }; + niaidMI = derive2 { name="niaidMI"; version="1.1.0"; sha256="0cg349qdlbixdyfzs5ahaf218a8gcpb2rvm0xaabsq9ray9gmq1a"; depends=[Rcpp]; }; nic = derive2 { name="nic"; version="0.0.1"; sha256="0nr84a0vvl682ahp9xq50y6mk5dsircgz4l2rqp0jgv2h7fkd0n2"; depends=[]; }; nice = derive2 { name="nice"; version="0.4-1"; sha256="1p8vmimiq9sbjvbx6c2wqwwkpnzw4kkdvjry6qyadmm3frwhj5qb"; depends=[]; }; nicheROVER = derive2 { name="nicheROVER"; version="1.1.0"; sha256="0chg2bnz929mq17qylf3f57g6bg4ih6w20019yh7vkz7mwjnvi3p"; depends=[]; }; @@ -13260,7 +13308,7 @@ in with self; { nightmares = derive2 { name="nightmares"; version="0.0.2"; sha256="1dmqrb17ncwazy1nb0zzfy7fq51ah7rz0xmhmmx6d30paaix2vc7"; depends=[raster rgdal sp]; }; nilde = derive2 { name="nilde"; version="1.1-6"; sha256="0ibml22frqmk4llzymvd4h1p2qnn46x5l0z4111m8h12czr1d9hw"; depends=[]; }; nima = derive2 { name="nima"; version="0.6.2"; sha256="0n8r8h1m0v0ssbpv6p32jby49f45qbicwr0awm7x054p48qk49cy"; depends=[assertthat dplyr ggplot2 ggthemes gridExtra gtools scales]; }; - nimble = derive2 { name="nimble"; version="0.12.1"; sha256="1n37g22wj5zlvb8lgxh9gi7mk011lyrmg3kaibhcpj2858hz681m"; depends=[coda igraph R6]; }; + nimble = derive2 { name="nimble"; version="0.12.2"; sha256="06qs22q0l1iv82q5q48f5hpn0jxy8pds378k9cxhnzws2nms7xra"; depends=[coda igraph R6]; }; nimbleAPT = derive2 { name="nimbleAPT"; version="1.0.4"; sha256="0615fm6sa6nf607ay98r81m0pp8yvydpwzn3972imf87irps2k3l"; depends=[nimble]; }; nimbleCarbon = derive2 { name="nimbleCarbon"; version="0.1.2"; sha256="1cj1yik4knxniag12qr8hqxkqhcm5lhq8xw7g8iibv3rxq0jvkki"; depends=[coda doSNOW foreach nimble rcarbon snow]; }; nimbleEcology = derive2 { name="nimbleEcology"; version="0.4.1"; sha256="1z4byxsana1fa2y7qhmiqbb8ana6zbas0cmbgcc703mqh1642jb2"; depends=[nimble]; }; @@ -13290,7 +13338,7 @@ in with self; { nlnet = derive2 { name="nlnet"; version="1.4"; sha256="13lv4b6chsjrhimny3wc1y9ljgbxmm1byj4j04n4vj8icn87gyfd"; depends=[coin e1071 earth fdrtool igraph randomForest ROCR TSP]; }; nloptr = derive2 { name="nloptr"; version="2.0.0"; sha256="16k124ll14p3ygny6i1zd7yza83bv2sk87x922n1bfn9rx4k3jk5"; depends=[testthat]; }; nlpred = derive2 { name="nlpred"; version="1.0.1"; sha256="05jna8hzd5v36a0dwag6zr8ms1pkryas3qarwb946bkxlslffp27"; depends=[assertthat bde cvAUC data_table np Rdpack ROCR SuperLearner]; }; - nlraa = derive2 { name="nlraa"; version="0.98"; sha256="1vihk6k8582iwwn2gzpbs1amg8wbvpiar4diljvjx75172lc1s0h"; depends=[boot knitr MASS Matrix mgcv nlme]; }; + nlraa = derive2 { name="nlraa"; version="1.2"; sha256="1h4hhjxys3sgk3cvhjcmfpxaqmkcmvsr5an6rgqqbg0zwgqizl1s"; depends=[boot knitr MASS Matrix mgcv nlme]; }; nlreg = derive2 { name="nlreg"; version="1.2-2.2"; sha256="0gkcxg5m287axhvkl00xy26vidawhhb1ii1s13rh49v0yccwvvqh"; depends=[statmod survival]; }; nlrr = derive2 { name="nlrr"; version="0.1"; sha256="09wm8s5sadkhkq9pb3fjk66cb2xn8py46w1d7yp7fjhczh31bjsq"; depends=[Hmisc rms]; }; nlrx = derive2 { name="nlrx"; version="0.4.3"; sha256="1w788fs9zkcbg99csiynd6cw9p8na2g5sg85065d17l6wxmxk7va"; depends=[crayon dplyr EasyABC furrr genalg GenSA igraph lhs magrittr progressr purrr raster readr rstudioapi sensitivity sf stringr tibble tidyr XML]; }; @@ -13349,8 +13397,8 @@ in with self; { nombre = derive2 { name="nombre"; version="0.4.0"; sha256="0bc66vc8xxg8q2x7nh4si04qgb2gxzl61jf4k10vc6v8dsglk77k"; depends=[fracture]; }; nomclust = derive2 { name="nomclust"; version="2.5.0"; sha256="17vqxbx5bpja2fxp83w0sbgbs61b2vaak9zzvvxkicxqwk09ix2v"; depends=[cluster Rcpp]; }; nominatimlite = derive2 { name="nominatimlite"; version="0.1.5"; sha256="0x3vaidx7w5v0713ddsj3dgczf788dpq7irjl63ihslvd4ncr6ba"; depends=[dplyr jsonlite rlang sf tibble]; }; - nomisr = derive2 { name="nomisr"; version="0.4.5"; sha256="15wfvklrc5ffv21n08qq9a4031qhm97vgbv7cvv662pndg853gj8"; depends=[dplyr httr jsonlite rlang rsdmx snakecase tibble]; }; - nomnoml = derive2 { name="nomnoml"; version="0.2.3"; sha256="08zraip0v4jc51zv2zsvka6k8d1ry2ac9d70xpavfggbgmrmz987"; depends=[htmlwidgets lifecycle png rlang webshot]; }; + nomisr = derive2 { name="nomisr"; version="0.4.6"; sha256="1d1qyx7iv22d1n274yz11wj0cpm3xycs330s2m7ri4cjhnw8wwjn"; depends=[dplyr httr jsonlite rlang rsdmx snakecase tibble]; }; + nomnoml = derive2 { name="nomnoml"; version="0.2.5"; sha256="1c1pv3c1s6cdc75malnhy69cc9za3hmikd46d35x1n2ww54lmldc"; depends=[htmlwidgets lifecycle png rlang webshot]; }; nomogramEx = derive2 { name="nomogramEx"; version="3.0"; sha256="16235rwblnzn8k53817llwy2pzhnpifh6ij159nxymjm8ar9qpbp"; depends=[pracma rms]; }; nomogramFormula = derive2 { name="nomogramFormula"; version="1.2.0.0"; sha256="1j6g5kndl0n2g8acwq8pn09sk0bjcsphbcd77ha1j5dnwdmy73c0"; depends=[do Hmisc rms]; }; nomordR = derive2 { name="nomordR"; version="0.1"; sha256="02d5gk5pd4vpd61ys9x81maxjrmbshx1wdv6xxsvafrnz7a7pmks"; depends=[]; }; @@ -13366,8 +13414,6 @@ in with self; { nonpar = derive2 { name="nonpar"; version="1.0.2"; sha256="0gflldd3kjbpdlvbwi073igj6shcqr9g5x6zcp5gfa12404qpflq"; depends=[]; }; nonparaeff = derive2 { name="nonparaeff"; version="0.5-8"; sha256="1kkn68m7cqlzx3v539cjxw3x5a2y86lvmyv2k98s87m3yvqg0gdk"; depends=[gdata geometry Hmisc lpSolve psych pwt rms]; }; nonparametric_bayes = derive2 { name="nonparametric.bayes"; version="0.0.1"; sha256="1acrjh0fcr15b9k2hpg0ihfav0w2lzjdpjyayz3f4hx596j32vi8"; depends=[mvtnorm progress]; }; - nontarget = derive2 { name="nontarget"; version="1.9"; sha256="0ndqcr73sja5ks5kdahhakpz9lw3rp26imklagdv4f5agqnb608s"; depends=[enviPat mgcv nontargetData]; }; - nontargetData = derive2 { name="nontargetData"; version="1.1"; sha256="07cdbpmn64sg4jfhljdcx503d55azyz58x7nkji044z3jmdryzqw"; depends=[]; }; nopaco = derive2 { name="nopaco"; version="1.0.6"; sha256="0q705b7bjzq0b6vfp6yargybc8h07adx8al1ip7pxkmfcpilj66v"; depends=[Matrix]; }; nopp = derive2 { name="nopp"; version="1.1.0"; sha256="1zn3ss89i7fwqps6b8syd9jzm68k95p3fdlf285q819dzlk61ypk"; depends=[MASS mlogit]; }; nor1mix = derive2 { name="nor1mix"; version="1.3-0"; sha256="1817wcvlmxs70vs4db0jkxd7i037744zz8ay3c2a9949z29fxr4w"; depends=[]; }; @@ -13386,6 +13432,7 @@ in with self; { nos = derive2 { name="nos"; version="1.1.0"; sha256="0hbncama8cx8q0rc56bil38fbj33z49v4d6zdkvxs6wgmmglnrfs"; depends=[dplyr gmp]; }; nose = derive2 { name="nose"; version="1.0"; sha256="17l78vmfqc22inq6zaqpnk2m91wp0nfjbbwfcpfqykf8lk9ipqna"; depends=[]; }; nosoi = derive2 { name="nosoi"; version="1.1.0"; sha256="1b7csrgax5ig9ibiwbhh2cl357hvdc6my4408vld498c8jjf0lyw"; depends=[data_table raster]; }; + not = derive2 { name="not"; version="1.3"; sha256="0ks1xpr5r0b7v77pyr9fnk7gkznrk95fsdicww8wv4mv3jplvh1h"; depends=[]; }; notifyR = derive2 { name="notifyR"; version="1.02"; sha256="0jx76ic5r1crcgg0n0yqnka0gwniflfxakh838a98j9wb11wi6h5"; depends=[RCurl rjson]; }; notifyme = derive2 { name="notifyme"; version="0.3.0"; sha256="0b6xrv6c4id7rs0dafg96pl4brn4yma5xh9wjz78ql44bg3w5s91"; depends=[dplyr httr magrittr]; }; novelforestSG = derive2 { name="novelforestSG"; version="1.2.1"; sha256="17gn4qc5f3n0gdmm0r1zlg6jlzd3n5d8a3fx6fynxnj8ncq604i7"; depends=[]; }; @@ -13398,7 +13445,7 @@ in with self; { npROCRegression = derive2 { name="npROCRegression"; version="1.0-6"; sha256="122sy722wbslmd0yq5gc9zs87ng45zlwcsfvl962czk3yncrn1bv"; depends=[lattice]; }; nparACT = derive2 { name="nparACT"; version="0.8"; sha256="0zwhz52j526n3xd21s7kghjaby56a8g296bkkc6scaa23zn1xg4b"; depends=[ggplot2 stringr zoo]; }; nparLD = derive2 { name="nparLD"; version="2.1"; sha256="1asq00lv1rz3rkz1gqpi7f83p5vhzfib3m7ka1ywpf2wfbfng27n"; depends=[MASS]; }; - nparMD = derive2 { name="nparMD"; version="0.1.0"; sha256="0kxbcykc01b1c68hk3akfhs9xzmshxvjvhm69k4j1c4nvpz8y9z9"; depends=[Formula gtools MASS matrixcalc matrixStats]; }; + nparMD = derive2 { name="nparMD"; version="0.2.1"; sha256="0wfmw1d4w8frbimq62749siy28bzci3h3lhsl5jx7zl7mxpl0q9a"; depends=[Formula gtools MASS matrixcalc matrixStats]; }; nparcomp = derive2 { name="nparcomp"; version="3.0"; sha256="1cs1idaylxdajb9vwpp6rkk56178i4c9nd0rxj8jbmdr56w4nrgq"; depends=[multcomp mvtnorm]; }; nparsurv = derive2 { name="nparsurv"; version="0.1.0"; sha256="1qy9qkkpqrk49vjxbyvl25i4kfk0py6v64izd8lmaw38dynybpy2"; depends=[survival TH_data]; }; npbr = derive2 { name="npbr"; version="1.6"; sha256="1jvq4snwrwjhhjgm8n8yxd5y94ks5zzi0xwdn931yp300qnikyzc"; depends=[Benchmarking np quadprog Rglpk]; }; @@ -13420,7 +13467,7 @@ in with self; { nppbib = derive2 { name="nppbib"; version="1.2-0"; sha256="1nn6wf89jhr3gy4rcd6px0cd5b1bsr7pbaxng4adba8n3yrss7vs"; depends=[]; }; npphen = derive2 { name="npphen"; version="1.1.1"; sha256="0xfsi6y4233gwslrh86chfpc71fdp5pfh4v9c9qcjqaib9hxvixn"; depends=[ks lubridate raster rgdal snow]; }; nprcgenekeepr = derive2 { name="nprcgenekeepr"; version="1.0.5"; sha256="1j6pfc694yf1m42a0fhlbh5wdbmgs61fswbw7083h69d2sr2zq05"; depends=[anytime futile_logger htmlTable lubridate Matrix plotrix readxl Rlabkey rlang shiny stringi WriteXLS]; }; - npreg = derive2 { name="npreg"; version="1.0-6"; sha256="0a28hj4a8j46zyh483y4b5abwy18yl648rf99nj8a2blhdmipyla"; depends=[]; }; + npreg = derive2 { name="npreg"; version="1.0-7"; sha256="1gr3nbzwa88favbfg9s3053s0jybblfbmhllfjc1a6p32s2p3yax"; depends=[]; }; npregderiv = derive2 { name="npregderiv"; version="1.0"; sha256="1k873cs3rs15l13z8017n4anacandx7di6yk1zlamcc5p3vlh59n"; depends=[]; }; npregfast = derive2 { name="npregfast"; version="1.5.1"; sha256="0s9ci3nybzwykrgi9z2rqp6l15mqbxf759ks0clvkbm7wxv3whk5"; depends=[doParallel foreach ggplot2 mgcv sfsmisc shiny shinyjs wesanderson]; }; nprobust = derive2 { name="nprobust"; version="0.4.0"; sha256="1vry64r3xms6xls6bqq918prjyhs5svhl2yjvq0jxycaaqw2sgyp"; depends=[ggplot2 Rcpp RcppArmadillo]; }; @@ -13452,7 +13499,7 @@ in with self; { nspmix = derive2 { name="nspmix"; version="1.5-0"; sha256="1jaaw5ibn614yhlid0csnzj31npdx5zivm2nhnvyghzcmvyxavr8"; depends=[lsei]; }; nsprcomp = derive2 { name="nsprcomp"; version="0.5.1-2"; sha256="1zlc1ximx96f235c0l8qfs6vbp1kpnbf943wxsfahnnlnxvwi59f"; depends=[]; }; nsrr = derive2 { name="nsrr"; version="0.2.0"; sha256="1x1c7pvyfvzmaymxcz6ghr5002wz48796c3hsihwbx6951w623sq"; depends=[digest httr jsonlite]; }; - nsyllable = derive2 { name="nsyllable"; version="1.0"; sha256="004qb43j8ygr9ay63b38w0fwm24bhlzd206sxg88hh5ia69fw8ms"; depends=[]; }; + nsyllable = derive2 { name="nsyllable"; version="1.0.1"; sha256="1rxzfivg5pkx8485l4bxxrdnvik31g5jps5l386x0w7mfs6498jg"; depends=[]; }; nucim = derive2 { name="nucim"; version="1.0.11"; sha256="12qfs4xd8lnkjhb0gkvxym07rndrwh5idvppj16v78amrk96rj5z"; depends=[bioimagetools EBImage fields stringr]; }; nullabor = derive2 { name="nullabor"; version="0.3.9"; sha256="19nfmsnzndg9pdjg7m9w4vm4c3209ny52cpjdhmmhggvf7dxaiyg"; depends=[dplyr forecast fpc ggplot2 magrittr MASS moments purrr rlang tibble tidyr tsibble viridis]; }; numDeriv = derive2 { name="numDeriv"; version="2016.8-1.1"; sha256="0idk02pqkziik932bd8k72d1q775g1is3m4bc861pcxfz6gx3i6q"; depends=[]; }; @@ -13463,6 +13510,7 @@ in with self; { numbersBR = derive2 { name="numbersBR"; version="0.0.2"; sha256="0ihxlny745gpz1ngq862rydn1zwn8zni1xw9mmgw8hkylsrnjfq8"; depends=[stringr]; }; numform = derive2 { name="numform"; version="0.7.0"; sha256="0n96jm141h4awazr8sads9d99faw8kdy3vbhmjr58d8iqf7793f8"; depends=[glue]; }; nutriNetwork = derive2 { name="nutriNetwork"; version="0.1.1"; sha256="0ya95h88jkiwc7cg7ic8bmyd7b0lgnhxrywwqvi2j6m6nbvvaxzy"; depends=[glasso huge igraph Matrix tmvtnorm]; }; + nutrientr = derive2 { name="nutrientr"; version="0.1"; sha256="09623rimvy0jd6i26bm8d80jhvgwril9r2vbnlcwznmqr4fr6fhm"; depends=[dplyr ggplot2 httr jsonlite qpdf stringr testthat tibble tidyr tidyselect]; }; nvctr = derive2 { name="nvctr"; version="0.1.4"; sha256="1r7q9snr9ya1586fwbyvnk8rlb9yikl4yp3bn9kni0sw820npk1d"; depends=[magrittr pracma]; }; nvmix = derive2 { name="nvmix"; version="0.0-8"; sha256="0vm10zjk69qmwii7qsgwwi6vp7mak2vxbm051ww6vzk0zfbhmvrf"; depends=[ADGofTest copula Matrix mnormt pcaPP pracma qrng]; }; nycflights13 = derive2 { name="nycflights13"; version="1.0.2"; sha256="07aa76c77pm1wpzkwjmzv8n6ir5i6fxawx8wx586gwc5wajcb1qf"; depends=[tibble]; }; @@ -13471,7 +13519,7 @@ in with self; { nzilbb_labbcat = derive2 { name="nzilbb.labbcat"; version="1.0-1"; sha256="0lypdwyvihza88jnccvh4wapfivsjy9sgxj4hvai52bkrw92578d"; depends=[httr jsonlite rstudioapi stringr]; }; nzpullover = derive2 { name="nzpullover"; version="0.3.0"; sha256="0b3mz5i58m48fa1x7gv4l3gqj0gvrar201ph2l1gkbcnfmazwjp8"; depends=[]; }; o2geosocial = derive2 { name="o2geosocial"; version="1.1.0"; sha256="158nbc45h4k677lgx9n976d9kz7hy8fb7z5s2v6pmkmh521jdn2a"; depends=[data_table geosphere ggplot2 outbreaker2 Rcpp visNetwork]; }; - o2plsda = derive2 { name="o2plsda"; version="0.0.14"; sha256="17b31kp6hvl7z0faklbhns9k7p016jnw2cwb3q2k8kp05j7kds5z"; depends=[dplyr ggplot2 ggrepel magrittr Rcpp RcppArmadillo]; }; + o2plsda = derive2 { name="o2plsda"; version="0.0.15"; sha256="0ngnj0r14w5zjiv3y4a3ijgr3jb1kvvlifnzk25m5zidz36lyjap"; depends=[dplyr ggplot2 ggrepel magrittr Rcpp RcppArmadillo]; }; oRus = derive2 { name="oRus"; version="1.0.0"; sha256="0q6hgiidcpm95pyisndihxjg78v6k1zycdqd72309aankdk0g5h4"; depends=[dplyr knitr rmarkdown stringr tibble tidytext tm topicmodels xlsx]; }; oaColors = derive2 { name="oaColors"; version="0.0.4"; sha256="040sdqrk9dciylnnrrshlj06s9qhvngii9shx1p8412ip7mk8r1m"; depends=[MASS RColorBrewer]; }; oaPlots = derive2 { name="oaPlots"; version="0.0.25"; sha256="0c5ig1ar02vg38pjjmp3gd53ij1j7pzajs0zrlfajz141qkv2ysr"; depends=[ggplot2 oaColors]; }; @@ -13489,10 +13537,11 @@ in with self; { obsSens = derive2 { name="obsSens"; version="1.3"; sha256="1vfm1mzsycwkqa39vf3fcdv1s6adps9hw1rxlvl8v9kq746hcabw"; depends=[]; }; observer = derive2 { name="observer"; version="0.1.2"; sha256="1027827k57qb4xppx0xxxffd1s3n7pz754irdx3v1v3piix8xi8m"; depends=[bazar bit dplyr lazyeval magrittr tibble]; }; occ = derive2 { name="occ"; version="1.1"; sha256="1aka29qqwbd494kvi15yyyqkb9hks4ky2gcvykxhx2drm2fnsn4g"; depends=[]; }; + occCite = derive2 { name="occCite"; version="0.5.2"; sha256="0v0zjnjxd2swj5m1vaclajfrf9jgqyvpnfkzzcg7hjl6f870b368"; depends=[bib2df BIEN curl DBI dplyr ggplot2 htmltools httr leaflet lubridate RColorBrewer rgbif rlang RPostgreSQL stringr taxize tidyr viridis waffle]; }; occupancy = derive2 { name="occupancy"; version="1.2"; sha256="0j50vg1405n1hp72xqsq1hp3gdbfx5yq9w1zdv6dzjc6vjhbx00d"; depends=[matrixStats]; }; ocd = derive2 { name="ocd"; version="1.1"; sha256="06pyc352pvn85k76z9797gwk0ksbb3snvh6krysp68k3lcygq872"; depends=[]; }; - oce = derive2 { name="oce"; version="1.5-0"; sha256="0iw171is4jjdb5kaq0a10anspq8an4bn76x1mp6l33qk2xml8phs"; depends=[gsw Rcpp]; }; - oceanic = derive2 { name="oceanic"; version="0.1.1"; sha256="0rnvr2jq27rq109nnddz0fylsrkzx26lgay8ipsmwp54c00glmmx"; depends=[rgdal sf sp]; }; + oce = derive2 { name="oce"; version="1.6-1"; sha256="1w0pbhki3z9qwaq6qgq3l4wr77yhs6xpd5fxpckw9ciwbj62v4ci"; depends=[gsw Rcpp]; }; + oceanic = derive2 { name="oceanic"; version="0.1.2"; sha256="15pnq3sf1h75np3xjvi3yap76z4jcpj1djm6i6cn16dbdx5p9cv3"; depends=[broom ggplot2 maps rgdal rgeos sf sp spData]; }; oceanis = derive2 { name="oceanis"; version="1.8.4"; sha256="0m0mhab74wnd9hm0im47c14m5mzsrvs61d07vikd8f1sly36h943"; depends=[classInt dplyr DT ggplot2 leaflet leaflet_extras lwgeom mapview sf shiny shinyBS shinyjs shinythemes stringr zip]; }; oceanmap = derive2 { name="oceanmap"; version="0.1.1"; sha256="06h4yxqcn3rjr3m2n82w128z110a4k5rg6msrbd0gcqksxc4vd2v"; depends=[abind extrafont fields lubridate mapdata maps maptools ncdf4 plotrix raster sp]; }; oceanwaves = derive2 { name="oceanwaves"; version="0.2.0"; sha256="1v4gj4ippv1l3r77z2ic19x5zi5lpsh5wihaqay3264zhpb3kv9a"; depends=[bspec ggplot2 signal]; }; @@ -13512,16 +13561,17 @@ in with self; { odeintr = derive2 { name="odeintr"; version="1.7.1"; sha256="0wfb5lgv10p0qyfbn9hdg14bda37v43lpgbwv6nbw63zzbsbazqi"; depends=[BH Rcpp]; }; odin = derive2 { name="odin"; version="1.2.1"; sha256="0xx31wyjdmad66ijwks64irf0j78hdjcifs5i8pla587xyv26ykk"; depends=[cinterpolate deSolve digest glue jsonlite R6 ring withr]; }; odk = derive2 { name="odk"; version="1.5"; sha256="0fcnr4c1clwx1sk6fgg4cx506gdi90n2h05g0i47p4s5bra0qwwl"; depends=[gsheet openxlsx]; }; - odpc = derive2 { name="odpc"; version="2.0.4"; sha256="1525apa5x4jqf8ijdc9xl60fgxsi5xsirhd35cmnc362sd7k2jjd"; depends=[doParallel foreach forecast MASS Rcpp RcppArmadillo]; }; + odpc = derive2 { name="odpc"; version="2.0.5"; sha256="0cbkq8parb8br1j386xk5mgwz8gkmwvp79f9sjvzhs7z6wlbp0pv"; depends=[doParallel foreach forecast MASS Rcpp RcppArmadillo]; }; odr = derive2 { name="odr"; version="1.2.1"; sha256="1k5qr5s28x14k831l92gx3zwfadq0q7nbnxj172hadhmggxfhkqc"; depends=[]; }; oem = derive2 { name="oem"; version="2.0.10"; sha256="1nf9ja4l7b9gnnvv216dz9siy02432qgyg930vcrqq3l8g05r6zc"; depends=[BH bigmemory foreach Matrix Rcpp RcppArmadillo RcppEigen]; }; oenb = derive2 { name="oenb"; version="0.0.2"; sha256="1jgxw7ycx2lcdzglg9nix8k08fs4r6i5jdsjzrd6w1dg6smsinl5"; depends=[dplyr XML]; }; ofGEM = derive2 { name="ofGEM"; version="1.0"; sha256="0xdkl8k12an9pdy6i5nay4m2iakrwsp0lr3zl8gphii75j0ywz7k"; depends=[CompQuadForm forestplot MASS]; }; - officedown = derive2 { name="officedown"; version="0.2.3"; sha256="1wz3312hq5ybichb0js7jiig7y0wb1nyd2lcsk1nlq70cqsgrv4w"; depends=[knitr memoise officer rlang rmarkdown rvg uuid xml2 yaml]; }; + officedown = derive2 { name="officedown"; version="0.2.4"; sha256="0h2zd7dzg63chakxsdb9n1w3sz684p63r6g1fphh4jcdmsbs5z2n"; depends=[knitr memoise officer rlang rmarkdown rvg uuid xml2 yaml]; }; officer = derive2 { name="officer"; version="0.4.1"; sha256="1gfx299zr4q2264q37994pirv5bd5isn1cszccz603ij3q40wajr"; depends=[R6 uuid xml2 zip]; }; offlineChange = derive2 { name="offlineChange"; version="0.0.4"; sha256="005afrm4ki4zz3zkgrf8c1v9gf5cjhc5g50mjkqya3r8npaccwq2"; depends=[Rcpp]; }; oglmx = derive2 { name="oglmx"; version="3.0.0.0"; sha256="13axmhbqhv4kkcdsdmp9r7p0d0kyqlsaqgyyllbkxlxb4hfz79b6"; depends=[maxLik]; }; ohenery = derive2 { name="ohenery"; version="0.1.1"; sha256="0i7cc110c30y7dm86srh2xkikkmlr28mvy0kkjxywxmiwnrsmzjq"; depends=[dplyr magrittr maxLik Rcpp]; }; + ohoegdm = derive2 { name="ohoegdm"; version="0.1.0"; sha256="1p1jica3fr4a5ilz1m2gxyzbapxjvgiw4v5rn90d5qgsmbp1hj42"; depends=[Rcpp RcppArmadillo]; }; ohtadstats = derive2 { name="ohtadstats"; version="2.1.1"; sha256="0hkjs322vii1dsminlkwpwi12sc9pd88jag7p4dmy6nfw2hh2d69"; depends=[lattice]; }; oii = derive2 { name="oii"; version="1.0.2.1"; sha256="1n41hikn53ikyynsravg127cw5csa8s0s1l63w5hym7c6j625ya5"; depends=[Deducer gmodels rapportools]; }; ojsr = derive2 { name="ojsr"; version="0.1.2"; sha256="0nwdws9kqnya9qjc939b7ksrf7ri6d25zzcdxhyhabirhnrqdg7m"; depends=[dplyr magrittr purrr rlang rvest tidyr urltools xml2]; }; @@ -13533,6 +13583,7 @@ in with self; { omd = derive2 { name="omd"; version="1.0"; sha256="0s1wcgivqapbkzjammga8m12gqgw113729kzfzgn02nsfzmsxspv"; depends=[]; }; omics = derive2 { name="omics"; version="0.1-5"; sha256="1y2x33mfgq98nglhvpr1wq1v6nfiq4njy2yac47x72rpwxsj9vb1"; depends=[lme4 pheatmap]; }; omicwas = derive2 { name="omicwas"; version="0.8.0"; sha256="03l53vbsard0hpaffcaa9l1aa3nh3w16j00k2jz2jqrrg02z0d7h"; depends=[broom data_table dplyr ff glmnet magrittr MASS matrixStats purrr rlang tidyr]; }; + omnibus = derive2 { name="omnibus"; version="1.1.2"; sha256="12fv9hlffxfs1b86gbq994yq4ha10yakrs8b44j11ncqjk1n16dk"; depends=[]; }; omopr = derive2 { name="omopr"; version="0.2"; sha256="1ng94jnarj7pszxzvdlnrr2dbcvv5p5yrscjw6ihqkskpraw9f7w"; depends=[DBI dbplyr dplyr RSQLite]; }; ompr = derive2 { name="ompr"; version="1.0.2"; sha256="0n68i5papc3nsx2zf6azxw1gz0x7zsj8q0hqmv73fk885l1awyd0"; depends=[data_table fastmap lazyeval listcomp Matrix rlang]; }; ompr_roi = derive2 { name="ompr.roi"; version="1.0.0"; sha256="1nv6cpnhfxz55r0y27i7rk81v45wblqhb9gis14rqdiypb74paif"; depends=[Matrix ompr ROI slam]; }; @@ -13549,7 +13600,7 @@ in with self; { oneclust = derive2 { name="oneclust"; version="0.2.1"; sha256="04nafy0bv3g5vjd5k7858lvs9rc141kzpblsdcb7sl4kfw76s11z"; depends=[magrittr Rcpp]; }; onehot = derive2 { name="onehot"; version="0.1.1"; sha256="1cdsz007wr054k5phvihhg4qx0fc039k2s6484m92kws8mb2ziix"; depends=[]; }; onelogin = derive2 { name="onelogin"; version="0.2.0"; sha256="06p3a8kaxmvsj8nn7dy8w6wv1jjw67is991hqg9q0fa20ifym3dl"; depends=[glue jsonlite magrittr R6 safer tibble]; }; - onemap = derive2 { name="onemap"; version="2.8.1"; sha256="0rc714ymwcgk05qcqzsispm8y8ip8h0y17fscgfyhwq2jh65a9sd"; depends=[dendextend dplyr ggplot2 ggpubr htmlwidgets plotly princurve RColorBrewer Rcpp rebus reshape2 smacof stringi tidyr vcfR]; }; + onemap = derive2 { name="onemap"; version="2.8.2"; sha256="14p3p3bvcgl63fk8sivwgqdcm7cydyh106rz26zk30gcjgvn91rm"; depends=[dendextend dplyr ggplot2 ggpubr htmlwidgets plotly princurve RColorBrewer Rcpp rebus reshape2 smacof stringi tidyr vcfR]; }; onemapsgapi = derive2 { name="onemapsgapi"; version="1.0.0"; sha256="11w3xkjxhjf0b78hfjxjk650giswaf1js471backz4pcb97gaigl"; depends=[dplyr furrr future httr purrr rlang stringr tidyr]; }; onepass = derive2 { name="onepass"; version="0.1.2"; sha256="1r8wk00aqc0sc7l6mmy1k4hkijfikynysrx5vvahbd6mlcdb3bmp"; depends=[jsonlite]; }; onewaytests = derive2 { name="onewaytests"; version="2.6"; sha256="05q2ir65x9pvsiim4l029hjhm12niiqjgk5rsx47i6vx23ffg8ir"; depends=[car ggplot2 moments nortest]; }; @@ -13572,8 +13623,9 @@ in with self; { oompaBase = derive2 { name="oompaBase"; version="3.2.9"; sha256="1cmw2s5dznmv675484jgvkzgvi6vhg0zbxsq6zhpqsisf672pjhl"; depends=[cluster]; }; oompaData = derive2 { name="oompaData"; version="3.1.1"; sha256="0by9qfxlx6fdmp12qnphlli5hdn5balvx4ckg64fw6vwa291g7b0"; depends=[]; }; ooplah = derive2 { name="ooplah"; version="0.2.0"; sha256="1p74jh9g62yicrw0lhpbn0diqi2myl24z28kpd2b3mglyffadr0b"; depends=[R6]; }; - oops = derive2 { name="oops"; version="0.1.0"; sha256="06kyb01f09ah8aamyrazpyafbvs5vq32p16kbn12qi9zkwn0m9kk"; depends=[pryr]; }; + oops = derive2 { name="oops"; version="0.2.0"; sha256="0xg69riqphvsqqa953v4mlcakvl0invf29678nrljibg31n4wak5"; depends=[]; }; opGMMassessment = derive2 { name="opGMMassessment"; version="0.3"; sha256="1y6g65y6r3l0p7dbw70w8lbp4c888llwd7ak9wliwin0a54y13lz"; depends=[AdaptGauss caTools cluster ClusterR DataVisualizations DistributionOptimization doParallel dplyr foreach ggplot2 mclust mixAK mixtools multimode NbClust rlang]; }; + opa = derive2 { name="opa"; version="0.2.0"; sha256="05jqqqrrzv6mmhk78zjyryjy5lh693ywg1rnaanmxzbjmwikinrs"; depends=[assertthat combinat ggplot2 Rcpp]; }; opalr = derive2 { name="opalr"; version="3.0.2"; sha256="0nwa77l4d4zz3jxmfgm8h8k823lvcvjzbk3i6ahscrhzw2ky2phc"; depends=[httr jsonlite labelled mime progress]; }; opdisDownsampling = derive2 { name="opdisDownsampling"; version="0.8.1"; sha256="18y2p13q9ib5siml00ycjq395saqpnn0wa0jf2936v48ji4kjjzp"; depends=[benchmarkme caTools doParallel foreach memuse pracma twosamples]; }; openCR = derive2 { name="openCR"; version="2.2.2"; sha256="1w3lrlc4w60fv026sbvmdki2jvg45m8mlbidwyd749vm93i3w6cs"; depends=[abind BH MASS nlme plyr Rcpp RcppParallel secr stringr]; }; @@ -13586,17 +13638,18 @@ in with self; { openVA = derive2 { name="openVA"; version="1.0.13"; sha256="1hps67qlimhrjk3ymmr0jgqac8z6vilqgrchqp6z7vydqirfyp5l"; depends=[cli crayon ggplot2 InSilicoVA InterVA4 InterVA5 Tariff]; }; openadds = derive2 { name="openadds"; version="0.2.0"; sha256="1jb8zd3rpxfkjkg895iab6m4cfi53p5vy3nnpjkgq7ym6499qjcv"; depends=[crul dplyr jsonlite maptools rappdirs readr tibble xml2]; }; openair = derive2 { name="openair"; version="2.8-6"; sha256="1h3klcg6gjr6q2pgcd317zyw9rpj4ngmkii0azcvrkpmqpbdkzrp"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr Rcpp readr rlang tidyr]; }; + openbankeR = derive2 { name="openbankeR"; version="0.1.1"; sha256="04jh3nnp53dzbk96dcz0xi67jqmp66mzbj81cy8mhhd2rl5ry9cj"; depends=[dplyr glue httpcode httr jsonlite magrittr tidyr]; }; openblender = derive2 { name="openblender"; version="0.5.81"; sha256="01akixxj04kgrxhv04icrivfpnipnpg9j62i3y19q3jkl9846lh1"; depends=[httr jsonlite]; }; opencage = derive2 { name="opencage"; version="0.2.2"; sha256="1sjkpp6cj6ivd68p6ql6vwgdvy0fwfkjv84wgwgb4i7f4mnxgnff"; depends=[crul dplyr jsonlite lifecycle memoise progress purrr ratelimitr rlang tibble tidyr withr]; }; - opencpu = derive2 { name="opencpu"; version="2.2.6"; sha256="0cmjfhkbk4im3x8aas0q5pivlsxgqixf4f3jiindchki7g9nsw91"; depends=[brew curl evaluate httpuv jsonlite knitr mime openssl protolite rappdirs remotes sys webutils zip]; }; + opencpu = derive2 { name="opencpu"; version="2.2.7"; sha256="06jpmk95hm39ib5c75xw0mdrdv9x9zz1qil3m8ysb6pp1xx47jz0"; depends=[brew curl evaluate httpuv jsonlite knitr mime openssl protolite rappdirs remotes sys webutils zip]; }; opencv = derive2 { name="opencv"; version="0.2.1"; sha256="1zb6qdvlgylzm9afq8ybcrn2w5wcym6zi4b36sycp4clbc7gncq5"; depends=[magrittr Rcpp]; }; opendatatoronto = derive2 { name="opendatatoronto"; version="0.1.4"; sha256="0ggf25ry31xz69fl95cglg45ld8w7rc83wci609fmb63bhj8dzlg"; depends=[ckanr curl magrittr readxl sf tibble xml2]; }; opendotaR = derive2 { name="opendotaR"; version="0.1.4"; sha256="17cygsw3nkg6zincfrcdh1509rlz3n5zrv9wvv7mjngm61sn79nf"; depends=[dplyr jsonlite lubridate]; }; openeo = derive2 { name="openeo"; version="1.1.0"; sha256="1vdga91jiw2dxfvjwr12kip60m8pdcvsan3g9cn9hhhpxsgidw6q"; depends=[base64enc httr jsonlite lubridate R6]; }; - openintro = derive2 { name="openintro"; version="2.2.0"; sha256="0jvgbb9az73sidr58lpz2p8gjigmi4873dpvzqbv7r8jzr1vqhvz"; depends=[airports cherryblossom ggplot2 readr rmarkdown tibble usdata]; }; + openintro = derive2 { name="openintro"; version="2.3.0"; sha256="0iknd0sk28qwm09zcs1dqqwlq28ph00swp75rbp6sfl0ypcnm7m5"; depends=[airports cherryblossom ggplot2 readr rmarkdown tibble usdata]; }; openmetrics = derive2 { name="openmetrics"; version="0.3.0"; sha256="0bcljsirlkxn0h87j2g2jb6spcik84h7nms06mcj40ckx188yr82"; depends=[R6]; }; - openssl = derive2 { name="openssl"; version="1.4.6"; sha256="0na3yficxg0hjql9pvz96f66yh4g5k2hfwcricb705z7f2pk5f23"; depends=[askpass]; }; - opentimsr = derive2 { name="opentimsr"; version="1.0.11"; sha256="0ad0kgy2byr228ljl0y6412zw3gy0kr17jyx7022bygpzv9d2158"; depends=[DBI Rcpp RSQLite]; }; + openssl = derive2 { name="openssl"; version="2.0.0"; sha256="0jsnzxa72bfxsdai25xyklmmrraaf9yv2nmqmf0bgzrkbzkgsa7b"; depends=[askpass]; }; + opentimsr = derive2 { name="opentimsr"; version="1.0.12"; sha256="1anxp7lk7dya68lqsy4fs5wf1baaridir1v1qwdlspc7wr0xb9yh"; depends=[DBI Rcpp RSQLite]; }; opentraj = derive2 { name="opentraj"; version="1.0"; sha256="13nqal96199l8vkgmkvl542ksnappkscb6rbdmdapxyi977qrgxk"; depends=[doParallel foreach maptools openair plyr raster reshape rgdal sp]; }; opentripplanner = derive2 { name="opentripplanner"; version="0.4.0"; sha256="1q0szrbgcjzc7ny08gilv2q0v1x81i626mzsahkii79qqb7capr1"; depends=[checkmate curl data_table geodist googlePolylines lubridate pbapply rjson sf sfheaders]; }; openxlsx = derive2 { name="openxlsx"; version="4.2.5"; sha256="0695b265g7jwiqk5c3vmmfkvagx82bkpwhvqzhqaqmmn34l6vl35"; depends=[Rcpp stringi zip]; }; @@ -13609,7 +13662,6 @@ in with self; { optBiomarker = derive2 { name="optBiomarker"; version="1.0-28"; sha256="10i9ir0056qxyiayg10v6v25m1b94m1wd7c8ssigiqjhjncpddw5"; depends=[e1071 ipred MASS Matrix msm randomForest rgl rpanel]; }; optCluster = derive2 { name="optCluster"; version="1.3.0"; sha256="0vzdd9awxli0zzyh2xb7j7wxza3fz5awyz6bjwf13qbjrrq43q2q"; depends=[cluster gplots kohonen MBCluster_Seq mclust RankAggreg]; }; optR = derive2 { name="optR"; version="1.2.5"; sha256="0q7jf4m0gzm11izl5lff17pvr855smqmc6zzi1bc7m6h3z865l32"; depends=[]; }; - optband = derive2 { name="optband"; version="0.2.1"; sha256="1rv4r7h7x3xipav917cz9bcr6nqjzbinfrqxv8mcls9gdl9ha3y9"; depends=[LambertW]; }; optbdmaeAT = derive2 { name="optbdmaeAT"; version="1.0.1"; sha256="1y1mvcyjihpj1wgjmifhmd10717wr1srp7h87azs4gfypgsiqchn"; depends=[igraph MASS Matrix]; }; optbin = derive2 { name="optbin"; version="1.1"; sha256="1v79qq1az8sg1slh9k3rqznw3dmppg0d0x7i2j5sz78b8gfq2m17"; depends=[]; }; optedr = derive2 { name="optedr"; version="1.0.1"; sha256="0ywq5s3y30r0il2vsd99qgd8m7c1xsk59fgzz8zs5ips3xsjmnwg"; depends=[cli crayon dplyr DT ggplot2 hrbrthemes magrittr nleqslv orthopolynom plotly purrr rlang shiny shinyalert shinydashboard shinyjs]; }; @@ -13627,9 +13679,10 @@ in with self; { optimParallel = derive2 { name="optimParallel"; version="1.0-2"; sha256="178ayfaivkbxkghxbg97lx4gl27kxkmgaaw9y8q5206r4cncd6qg"; depends=[]; }; optimStrat = derive2 { name="optimStrat"; version="2.3"; sha256="1jkwhgpw7nknd7h8c01z25x566bw2qb388i6g5nwcygxsshdgpri"; depends=[cubature mvtnorm shiny]; }; optimalThreshold = derive2 { name="optimalThreshold"; version="1.0"; sha256="1m39q36p7i7z31b90awriq5jf9rfybyw5lj3m1w33v2ssipkzp1n"; depends=[ars coda HDInterval mgcv rjags]; }; + optimall = derive2 { name="optimall"; version="0.1.1"; sha256="15cq4b50j39ahpx84g0wrg7gs9n36rx4ij2srm14zcjsmvnxbv9p"; depends=[dplyr glue magrittr rlang tibble]; }; optimbase = derive2 { name="optimbase"; version="1.0-10"; sha256="0hdzbqr03jwy1vz3q9iw0kvii5p9g1vm4c3hs3jxszcj1rgrfm12"; depends=[Matrix]; }; optimg = derive2 { name="optimg"; version="0.1.2"; sha256="0fc7d3g5nxjjcbwh6v5m0ryhanw80v250j8m7j2gv4c9ql4g650d"; depends=[ucminf]; }; - optimization = derive2 { name="optimization"; version="1.0-8"; sha256="0xxspcv0vwnczi18ndifl8v2jg5i0vy6rp959vrsqcvxqpxp3q2l"; depends=[colorspace Rcpp]; }; + optimization = derive2 { name="optimization"; version="1.0-9"; sha256="1pg9a78hhm0h4pfagj13r1dmynv714knhw2dxhzhcvlgk9inpam8"; depends=[colorspace Rcpp]; }; optimos_prime = derive2 { name="optimos.prime"; version="0.1.2"; sha256="1a76gfzpd2s4gq15cd3frndak7wc6q3xqh9sllkk665031fx6z1h"; depends=[ggplot2 plotly tidyverse]; }; optimr = derive2 { name="optimr"; version="2019-12.16"; sha256="003wz9r3xdi47ad22l4dkhp0dalknb2s9fp82yamjx7x1xbfvcbk"; depends=[numDeriv optextras Rcgmin Rvmmin setRNG]; }; optimsimplex = derive2 { name="optimsimplex"; version="1.0-8"; sha256="1q5hfbiq265q5im6wg78spaqsfj421hpzh8bz51zmi188h6xwnwr"; depends=[optimbase]; }; @@ -13640,7 +13693,6 @@ in with self; { optionstrat = derive2 { name="optionstrat"; version="1.4.1"; sha256="0vidaf888zdls5yxy7637fqg6r39l3rxw9bhn16s4xmag7kawljv"; depends=[]; }; optiscale = derive2 { name="optiscale"; version="1.2.2"; sha256="1ay2lfk4isv0gir5diwxlx4ml5bv5qyqbwm34py85fp6bh92987r"; depends=[lattice]; }; optistock = derive2 { name="optistock"; version="0.0.1"; sha256="1nyz64bfi4s10i4mq7crdkn3b3zqr674vfxkdd3kphjqk0wmiv1j"; depends=[]; }; - optmatch = derive2 { name="optmatch"; version="0.9-15"; sha256="1n4ifrb2mvvvjp3q0slfqqx3ly9jlcsdg5x00dkg3drrv6zgs03m"; depends=[digest Rcpp RItools survey survival]; }; optparse = derive2 { name="optparse"; version="1.7.1"; sha256="1rqz0y4r94y3mwbb9kyz97cjqpnprka96qbncvbnbmgg2d630kij"; depends=[getopt]; }; optpart = derive2 { name="optpart"; version="3.0-3"; sha256="18h659gbgzflq81lcchc058xjgljkmhpsjkh51ylygwrv1qjrz2i"; depends=[cluster labdsv MASS plotrix]; }; optrcdmaeAT = derive2 { name="optrcdmaeAT"; version="1.0.0"; sha256="16g4612mwyfsckn6l71fbrjnnjv4yvnac1cccbrn3k8jh07qgb1h"; depends=[igraph MASS Matrix]; }; @@ -13654,7 +13706,7 @@ in with self; { orcutt = derive2 { name="orcutt"; version="2.3"; sha256="0pj7pqzbcg4gp35nsz3avyawmx69dgj0l2w0x8ypw5qwl4zhmnyk"; depends=[lmtest]; }; ordDisp = derive2 { name="ordDisp"; version="2.1.1"; sha256="0906y98ydiadyqhz9ad2ssw1282a10c418k20vkbwzad2xip7grg"; depends=[VGAM]; }; ordPens = derive2 { name="ordPens"; version="1.0.0"; sha256="1q6v3xkaahpzkycjnn75a62narwj4g86ha9m786nfp941ql44vlr"; depends=[glmpath grplasso mgcv quadprog RLRsim]; }; - ordbetareg = derive2 { name="ordbetareg"; version="0.2.0"; sha256="1rga6vfl9zjdmcn58cwd84ab636a01b5r0in183n8dv5nr0bla3a"; depends=[brms dplyr faux tidyr]; }; + ordbetareg = derive2 { name="ordbetareg"; version="0.2.1"; sha256="0qxb5vx56250l4l5gk1drrzjwhm74267g98145cn8lwykcwh7vdp"; depends=[brms dplyr faux tidyr]; }; ordcrm = derive2 { name="ordcrm"; version="1.0.0"; sha256="1hy24s23l099b21w5j3p2f0748s8xmhxhslfp65fg7ycwda5qsyw"; depends=[rms]; }; orderbook = derive2 { name="orderbook"; version="1.03"; sha256="0dlvjrzdhhh8js4g1lvxs46q7fdxfxavxnb4nj6xlwca75i51675"; depends=[hash lattice]; }; ordering = derive2 { name="ordering"; version="0.7.0"; sha256="0sgwgcjg6sazmi11c9qvxfrzg671kcp18i2q20xbmbj4v3yqhwbh"; depends=[]; }; @@ -13667,7 +13719,7 @@ in with self; { ordinalCont = derive2 { name="ordinalCont"; version="2.0.2"; sha256="1azwcr1si3b8dxf2y59d3rxw4msfq79khzg7zgqd0kbzyka4ygl8"; depends=[boot Deriv]; }; ordinalForest = derive2 { name="ordinalForest"; version="2.4-2"; sha256="0s5isf8z6rrksl4jv1aizffxy3bcl726qjpj5j6z7642wkdkpygi"; depends=[combinat nnet Rcpp verification]; }; ordinalLBM = derive2 { name="ordinalLBM"; version="1.0"; sha256="1sfzkm3f9s5nbalakgk5v919wr7hdlr5p280rw2p8dy4wxr3xk3s"; depends=[RColorBrewer reshape2]; }; - ordinalNet = derive2 { name="ordinalNet"; version="2.10"; sha256="0d2762scs1hwch5dc54dcin8j7ls9an69k68blabpcwq2i429ncz"; depends=[]; }; + ordinalNet = derive2 { name="ordinalNet"; version="2.11"; sha256="1xqrg5aglpm20ddi4ywhkcndi06fw3xxkfffqiapjs4bjayqfjji"; depends=[]; }; ordinalRR = derive2 { name="ordinalRR"; version="1.1"; sha256="1sfkq8gryyls22208ympw5scgb4jkd27pyc1qklw4x7cz9wfnfbp"; depends=[rjags]; }; ordinalgmifs = derive2 { name="ordinalgmifs"; version="1.0.6"; sha256="0axpndyyns649mwifq8f16l8n8x9nic8cv8l71ljyr2gwlm0nqz0"; depends=[survival]; }; ordinalpattern = derive2 { name="ordinalpattern"; version="0.2.0"; sha256="0nf7323wd8wm4qxlhr6cvm1l87rwfdr5c4qivhncy0m2n5vknc1c"; depends=[gtools mvtnorm]; }; @@ -13705,7 +13757,7 @@ in with self; { osmgeosample = derive2 { name="osmgeosample"; version="0.1"; sha256="1vcdisf147mcdqkc35czcphjh6rhaix9vy6l5inknaarmmajri3x"; depends=[dplyr geoR mapview nngeo osmdata pdist processx qpdf Rcpp rgdal sf sp splancs tibble]; }; osmose = derive2 { name="osmose"; version="3.3.4"; sha256="144mklbish59amzz7j95qmn98yqlz3bqzd2rp03wg9f5s69bxjj6"; depends=[fields knitr mgcv ncdf4 rlist rmarkdown stringr]; }; osmplotr = derive2 { name="osmplotr"; version="0.3.3"; sha256="0p94phv7jn0q9k25300zz59ldfphm9xgy6i7n3r8xj4zay0c7mf2"; depends=[e1071 ggm ggplot2 mapproj osmdata rgeos sp spatstat spatstat_core spatstat_geom]; }; - ospsuite_utils = derive2 { name="ospsuite.utils"; version="1.0.0"; sha256="1zbnxqabil52icpr8ykif5b3vs4rb18jiqicw26bvvv5q8aw1hf8"; depends=[R6]; }; + ospsuite_utils = derive2 { name="ospsuite.utils"; version="1.2.0"; sha256="16gcqnkqz0nz7mhgbnji3p1k2vv43jypx2xbcz4i4d8v1368akly"; depends=[R6]; }; osqp = derive2 { name="osqp"; version="0.6.0.5"; sha256="1djsd2fval9g18vx1dym8bnsnlv8p166zfyzdsj105ydn346kz08"; depends=[Matrix R6 Rcpp]; }; osrm = derive2 { name="osrm"; version="3.5.1"; sha256="1fii7xgcnrqmfp9rak6hfn6fh5pgwvww2nj9zfmrz6ams22ac6sw"; depends=[curl googlePolylines isoband jsonlite sf]; }; osrmr = derive2 { name="osrmr"; version="0.1.36"; sha256="1vnf6g1d9fjckz9ay910nb9gr1km2adwk3b0k460mxvpr36izkh7"; depends=[assertthat bitops R_utils rjson stringr]; }; @@ -13716,6 +13768,7 @@ in with self; { otrimle = derive2 { name="otrimle"; version="2.0"; sha256="0rca8ln9cyikfpsf1af550cfx2zx110c8jxv64xf8dnnd09s9h7b"; depends=[doParallel foreach mclust mvtnorm robustbase]; }; otsad = derive2 { name="otsad"; version="0.2.0"; sha256="1jb6raxm70aywbgs7bdyw8vccy1nj924f4hkpjrlgnvzmy0hyhvs"; depends=[ggplot2 plotly reticulate sigmoid]; }; ottr = derive2 { name="ottr"; version="1.1.3"; sha256="1sdr03sid4kix00ip0ipirr9qswxpj40mbhg17hzlj7gvjka77ka"; depends=[jsonlite pryr R6 testthat yaml zip]; }; + ottrpal = derive2 { name="ottrpal"; version="1.0.1"; sha256="02y917r48mqkga27f8019cdbx4mh45dr8l9s2ai1anxgvccnb4yi"; depends=[bookdown curl dplyr fs glue httr knitr magrittr purrr R_utils readr rmarkdown rprojroot rvest stringr xml2 yaml]; }; otuSummary = derive2 { name="otuSummary"; version="0.1.1"; sha256="04l667qmp7wqkbdsk87j92gf89s13090kzs8cjlmxsp6i69r34z2"; depends=[reshape2 vegan]; }; otvPlots = derive2 { name="otvPlots"; version="0.2.1"; sha256="0fjx0kl9y77mazwy7lg4mxc9sg8ysvvbl4h3k6bvfpnjm5x62hff"; depends=[data_table ggplot2 gridExtra Hmisc moments quantreg scales stringi]; }; ouch = derive2 { name="ouch"; version="2.17"; sha256="1a7r24j59xz3lxa5wc694j6b80j8m5l86zd1sw9pvs66l8gd98kf"; depends=[subplex]; }; @@ -13725,7 +13778,7 @@ in with self; { outcomerate = derive2 { name="outcomerate"; version="1.0.1"; sha256="07mwml7r98qjgvrp938sqf7klyspz110583j0zwb72j69n4whmrj"; depends=[Rdpack]; }; outlierensembles = derive2 { name="outlierensembles"; version="0.1.0"; sha256="0m2iaf3rbpwvyrjz6qglbrinmz676hnbqqm6vc38zb3k3cjcllaq"; depends=[airt apcluster EstCRM psych]; }; outliers = derive2 { name="outliers"; version="0.14"; sha256="0vcqfqmmv4yblyp3s6bd25r49pxb7hjzipiic5a82924nqfqzkmn"; depends=[]; }; - outliertree = derive2 { name="outliertree"; version="1.7.6-1"; sha256="0hb44l5rr2acpv1szfrmj4gxh1zj25gw6zjvymh2vgk4i9aa20im"; depends=[Rcereal Rcpp]; }; + outliertree = derive2 { name="outliertree"; version="1.8.1"; sha256="00fa8f4m48gig97hk7709r0x9c7v7jncryd4x4py0f9hd18vv4ix"; depends=[Rcereal Rcpp]; }; outreg = derive2 { name="outreg"; version="0.2.2"; sha256="04f1x7mxq4swbd7bfwjjgx4838jm6qj4piaighmhcscwrdkxa1cp"; depends=[magrittr reshape2 sandwich stringr tidyr]; }; outsider = derive2 { name="outsider"; version="0.1.1"; sha256="082yygvjs31clz8b3p59gkc26249gqp8hl1071gm6zi4vi2ng43x"; depends=[crayon curl jsonlite outsider_base remotes tibble yaml]; }; outsider_base = derive2 { name="outsider.base"; version="0.1.4"; sha256="1wlr3a14a330r9p4lahdmgs4hbgfsp05rsbzr30djwpv21bfl03a"; depends=[callr cli crayon devtools pkgload sys tibble yaml]; }; @@ -13738,7 +13791,7 @@ in with self; { overviewR = derive2 { name="overviewR"; version="0.0.7"; sha256="1y8iqgyhppl2w9z59azi3h1kgzrw5a1zqw09zyjp0ghlvpjbn9cn"; depends=[dplyr ggplot2 tibble]; }; owd = derive2 { name="owd"; version="1.0.6"; sha256="08f1zzlnkfdzm5rlw14qm6yvn68j2yas21zjsy31pc59rh3lzkyh"; depends=[]; }; owdbr = derive2 { name="owdbr"; version="1.0.1.1"; sha256="0q4654zr5aw04sssy7127vafry72b7p3d8i44fqvqg3055awin0i"; depends=[data_table dplyr httr jsonlite magrittr tibble]; }; - owidR = derive2 { name="owidR"; version="1.1.0"; sha256="1i9lqmabwk8nnva428syfk3zbr60s6crx6dq8y8i4272xprqd5dk"; depends=[curl dplyr forcats ggplot2 ggrepel htmltools jsonlite leaflet magrittr purrr readr rlang rvest scales sf stringr xml2]; }; + owidR = derive2 { name="owidR"; version="1.2.0"; sha256="0c0i0sbnzg61sx9nbc7srahkypk1fwysvbnrhp6j3vbd1rf6jqfk"; depends=[curl dplyr forcats ggplot2 ggrepel htmltools httr jsonlite leaflet magrittr purrr readr rlang rvest scales sf stringr xml2]; }; owmr = derive2 { name="owmr"; version="0.8.2"; sha256="0qlb5aw6n06yf8y2gd2fjp8kp3w0xgqh3fka7rxqndgvaqmin1a6"; depends=[httr jsonlite magrittr plyr tibble tidyr]; }; ows4R = derive2 { name="ows4R"; version="0.2-1"; sha256="19mm328slb2d8i0qg6nzifah276x637gcivrad24iz8zwn0msdc4"; depends=[geometa httr keyring openssl R6 rgdal sf XML]; }; ox = derive2 { name="ox"; version="0.1.0"; sha256="0j0va301bmppvmk6paqaqqaw85h8yf92i3pz7i59f2j8q9im82rx"; depends=[]; }; @@ -13761,11 +13814,10 @@ in with self; { pROC = derive2 { name="pROC"; version="1.18.0"; sha256="1abvbzdss12n64pp9vlgnn0q3abh0nj4n0a8cinwwvhphjrm9vym"; depends=[plyr Rcpp]; }; pRSR = derive2 { name="pRSR"; version="3.1.1"; sha256="1irx95b7cwvx3gpn9brjjn4k947m8frz542r18nilc9f1159mb3s"; depends=[]; }; pRecipe = derive2 { name="pRecipe"; version="0.1.1"; sha256="05lhviyzsrfh1f7jfp77i9xk5nnj4k3kgynw8brxmkyjnr68rayf"; depends=[curl data_table dplyr gdalUtils getPass ggplot2 hdf5r lubridate maps ncdf4 R_utils raster rgdal sp stringr viridis zoo]; }; - pTITAN2 = derive2 { name="pTITAN2"; version="1.0.1"; sha256="10slq7bazzj8fml0nsc3fkdyljhkh0ni6sf23iwav3f20kyqrzi4"; depends=[data_table]; }; + pTITAN2 = derive2 { name="pTITAN2"; version="1.0.2"; sha256="1mwx7k8ql4l572xvwb5gns9n4kqk779wwm4sg7nbgzz8xvcdh665"; depends=[data_table]; }; pa = derive2 { name="pa"; version="1.2-1"; sha256="1pfgzxirkb0p8f6smjlrbp1qpsh0vsvqf306cvldaj9zx8cw0q9f"; depends=[ggplot2]; }; pacbpred = derive2 { name="pacbpred"; version="0.92.2"; sha256="13p405vh9rf1r5idxl5payc85vwlzcd87wm15163vc9gmil1ncsf"; depends=[]; }; pack = derive2 { name="pack"; version="0.1-1"; sha256="0x4p8clwp49s2y67y7in530xwhjngnqwagf9xnyb1jp0z3myd3r7"; depends=[]; }; - packClassic = derive2 { name="packClassic"; version="0.5.2"; sha256="04a1sg9vx3r0sq54q9kj0kpahp6my246jy3bivgy09g5fjk0dmkj"; depends=[]; }; packDAMipd = derive2 { name="packDAMipd"; version="0.2.2"; sha256="0n32vqpl6ym9wjwk8apsgkh7i4jin253l1v0gphvy2v1azcpyrc9"; depends=[broom car data_table dplyr effects flexsurv ggplot2 gvlma hash haven IPDFileCheck lme4 lmtest MASS nlme readxl relaimpo reshape2 rlang stringr survival survminer SurvRegCensCov systemfit tibble tidyr tidyverse tm valueEQ5D]; }; packHV = derive2 { name="packHV"; version="2.2"; sha256="0bj7zhlz2283y1hfdqdn7xil4wscwri1f5hszarwjwczx4n5sv81"; depends=[survival WriteXLS]; }; packMBPLSDA = derive2 { name="packMBPLSDA"; version="0.8.0"; sha256="0jn47zhcfssa2rwjh8jc2zc93g766pslxx8vjm0bsnzyzjl2yqb9"; depends=[ade4 DiscriMiner doParallel FactoMineR foreach MASS pROC]; }; @@ -13781,17 +13833,17 @@ in with self; { pacman = derive2 { name="pacman"; version="0.5.1"; sha256="0z7gngd6h83cpjhq1vg75wvzhdjbgjh7gj5d4zvvi9gd2lmagjcy"; depends=[remotes]; }; paco = derive2 { name="paco"; version="0.4.2"; sha256="0p02fdc5f7d7sbdvxill8jln76p1ndiw95k6s9j41slfriq647vd"; depends=[ape plyr vegan]; }; pacotest = derive2 { name="pacotest"; version="0.4.1"; sha256="1ry0lwzphgivmlc8swhk6l26q4ca6x36rm8r7vvjb64y0fvayqk5"; depends=[ggplot2 gridExtra numDeriv Rcpp RcppArmadillo VineCopula]; }; - pacs = derive2 { name="pacs"; version="0.3.5"; sha256="0a8k6i7v26r4njbpcy3zp556kxn1p9rx6v7375k1r4w2b49jba6k"; depends=[memoise stringi xml2]; }; + pacs = derive2 { name="pacs"; version="0.4.3"; sha256="1pa5s69rgxv7z3jyxxkd835pf76zjz24h3hdpqqnxr11mipvv256"; depends=[curl jsonlite memoise renv stringi xml2]; }; pacviz = derive2 { name="pacviz"; version="1.0.1"; sha256="0afh10zf32lk6gh42y6mjfgdw2blhjavhbq2n3s8h62w9blfad5g"; depends=[circlize e1071 plotrix]; }; padr = derive2 { name="padr"; version="0.6.0"; sha256="1l8i40vqpy033j8nc8fqp9ymn378bhyy4hkj8xhk94npv7jibqkk"; depends=[dplyr lubridate Rcpp rlang]; }; paf = derive2 { name="paf"; version="1.0"; sha256="0wrqn67jfrjjxwcrkka6dljgi3mdk00vfjkzzcv2v7c97gx1zvwn"; depends=[survival]; }; pafdR = derive2 { name="pafdR"; version="1.0"; sha256="1yimsd4h23hcf752p5flda3dqk8hgn6qm9k0pmbapxj4jbsw14w5"; depends=[curl exams stringr]; }; pafr = derive2 { name="pafr"; version="0.0.2"; sha256="0ali4m1pv73y88x1dk5rvmg1ysy48janjnc1hnqfcndszfz2b0wm"; depends=[dplyr ggplot2 rlang stringr tibble]; }; - pagedown = derive2 { name="pagedown"; version="0.16"; sha256="0ia1x6sjhwzicw8dr6i12ihcgpf8h0qn3c5343bfvw5lncmrpb74"; depends=[bookdown htmltools httpuv jsonlite later processx rmarkdown servr websocket xfun]; }; + pagedown = derive2 { name="pagedown"; version="0.17"; sha256="100av273xnky7zb0mxxwswv2n711qbc692sz7708pl52xvx29cqs"; depends=[bookdown htmltools httpuv jsonlite later processx rmarkdown servr websocket xfun]; }; pagemap = derive2 { name="pagemap"; version="0.1.3"; sha256="1rwspbk7xmp27iadrd1471a7z71qyzlb0vnkw4ssjk7wi8q48fnj"; depends=[htmlwidgets]; }; pagenum = derive2 { name="pagenum"; version="1.2"; sha256="0nid26wmrm76ifxqpqqry232q4alf80i7df1rg237qil8asx06k1"; depends=[]; }; pageviews = derive2 { name="pageviews"; version="0.5.0"; sha256="1fhlm2y288wx625y0glxybjb0xv9sqvvln35jqlwqq38h3grcpqd"; depends=[curl httr jsonlite]; }; - pagoda2 = derive2 { name="pagoda2"; version="1.0.8"; sha256="1fxcn6g197na4fjs4ra1s1gz1nihcvai2zk4p55hk0qf3nz2r707"; depends=[dendsort drat fastcluster igraph irlba magrittr MASS Matrix mgcv N2R plyr R_utils R6 Rcpp RcppArmadillo RcppEigen RcppProgress rjson rlang RMTstat Rook Rtsne sccore urltools]; }; + pagoda2 = derive2 { name="pagoda2"; version="1.0.9"; sha256="0dzq40wc9yyfmycb8cghvfmvd6y5qg7q5p3m3g8r1bcjc8qfbl2f"; depends=[dendsort drat fastcluster igraph irlba magrittr MASS Matrix mgcv N2R plyr R_utils R6 Rcpp RcppArmadillo RcppEigen RcppProgress rjson rlang RMTstat Rook Rtsne sccore urltools]; }; pagoo = derive2 { name="pagoo"; version="0.3.12"; sha256="16d935lwsx2b9g57k8sh48pc6ldgga0q6z2pgm6p4ia07l0p4rd4"; depends=[BiocGenerics Biostrings dendextend DT GenomicRanges ggfortify ggplot2 heatmaply magrittr plotly R6 reshape2 S4Vectors shiny shinydashboard shinyWidgets vegan]; }; painbow = derive2 { name="painbow"; version="1.0.1"; sha256="10c8spknh7sqa4vl0q4bjdwd03nl4qk28hj2qa9sbyb1ryc7p4j9"; depends=[ggplot2]; }; painter = derive2 { name="painter"; version="0.1.0"; sha256="0qr6p13h50rlavcsamxmijfr4dfrbv1k088m28qf8a4gam3ap85b"; depends=[]; }; @@ -13830,7 +13882,7 @@ in with self; { pan = derive2 { name="pan"; version="1.6"; sha256="1dk3jjj826p7xrz10qz04vyc068xnypg7bp0pj4c32z3da0xzh5d"; depends=[]; }; pander = derive2 { name="pander"; version="0.6.4"; sha256="1knjcr50xxns3w3kh15myjpsizn4d7fdqx071a4yj90imif07qjh"; depends=[digest Rcpp]; }; pandocfilters = derive2 { name="pandocfilters"; version="0.1-4"; sha256="1nlnvnvq3zwzpf6hnf8akl0w25kr7hrbr98rw5vgncxw35314xdp"; depends=[jsonlite]; }; - panelView = derive2 { name="panelView"; version="1.1.5"; sha256="1pvi1b571sbqbhma7m277ppcv98c9yc720fr9pgqfdy8hswsd2rd"; depends=[ggplot2 gridExtra]; }; + panelView = derive2 { name="panelView"; version="1.1.9"; sha256="1qrlw4n5sw1mdchgn6p2f2zijmmm87nq5ffdgg4m1gyzkd40qfw8"; depends=[ggplot2 gridExtra]; }; panelWranglR = derive2 { name="panelWranglR"; version="1.2.13"; sha256="0zj0m08518zi6xsa7qik61ys1qqa2lqiar4l7acclkw58w5zrmbc"; depends=[caret data_table Hmisc]; }; panelaggregation = derive2 { name="panelaggregation"; version="0.1.1"; sha256="0x8ldqb9216pclfvs4ymdpian43v2ydkyflpf0k6lcn35r04xfr6"; depends=[data_table]; }; panelr = derive2 { name="panelr"; version="0.7.6"; sha256="0vc57c261n9himhxs0yy2pd5vd935cg42hf6jnk84y61glw7dgxk"; depends=[crayon dplyr Formula ggplot2 jtools lme4 lmerTest magrittr purrr rlang stringr tibble]; }; @@ -13850,11 +13902,11 @@ in with self; { parallelMap = derive2 { name="parallelMap"; version="1.5.1"; sha256="1qg7zpz5sd9jp8wzjqahkhipwj1jn192llwg06q4gv9mlcsac261"; depends=[BBmisc checkmate]; }; parallelPlot = derive2 { name="parallelPlot"; version="0.1.0"; sha256="1zppgd0dwxfryv6wfl6k7jrny1yqb5q4f8phnnmzz9ydlv7xyv32"; depends=[htmlwidgets]; }; parallelly = derive2 { name="parallelly"; version="1.30.0"; sha256="0fwzkzw9vjblwk5rg56yl8qfn7irnbpm70405lmj7awvf35q1c5a"; depends=[]; }; - param6 = derive2 { name="param6"; version="0.2.3"; sha256="1d4fhs82qpb18480wg6i1q59kw65hqvafv5nb7p7jqys16mmsj3i"; depends=[checkmate data_table dictionar6 R6 set6]; }; + param6 = derive2 { name="param6"; version="0.2.4"; sha256="0h4r2l670zvsbq0cakbm7f5yc0ghaf40kby80q3ql8lwgfnay1jd"; depends=[checkmate data_table dictionar6 R6 set6]; }; paramGUI = derive2 { name="paramGUI"; version="2.1.4"; sha256="0k2wkl99ji3w7xmd9k7zzvrr3dbf3237q7lxm527dnrq331pmxmi"; depends=[colorspace fields shiny shinydashboard TIMP]; }; parameters = derive2 { name="parameters"; version="0.16.0"; sha256="1i295d5nqjr3pvp9vz59wiasrxy9n78q518phcd15sxcjzcj0l27"; depends=[bayestestR datawizard insight]; }; paramhetero = derive2 { name="paramhetero"; version="0.2.0"; sha256="16gvs8328bnqvhx47f0xwnmbmlakxmp4ivnjxk2b13z6qjs70ij4"; depends=[ggplot2 ggpubr lme4 survey]; }; - paramlink = derive2 { name="paramlink"; version="1.1-2"; sha256="0y6wsrxwyavipmrjjznr2n920w0p6qlwapxc9mnkh9c6w3yznka2"; depends=[assertthat kinship2 maxLik]; }; + paramlink = derive2 { name="paramlink"; version="1.1-4"; sha256="1dwm7kv1a9d07hpk3l6mih6qbq9ga7idqlyqs0impxnd83lwp093"; depends=[assertthat kinship2 maxLik]; }; paramlink2 = derive2 { name="paramlink2"; version="1.0.3"; sha256="0ypn0fdrphblw64sdnfmyf9q4zbakqvl4xzr451phvhx52n1gb73"; depends=[pedprobr pedtools]; }; params = derive2 { name="params"; version="0.7.3"; sha256="0zii9nxgl2z46vyqn2l0kdjmib90534ybpizck74mp2wp1vh9ndj"; depends=[glue purrr RcppTOML readr whisker]; }; paramtest = derive2 { name="paramtest"; version="0.1.0"; sha256="0yn1s1qkgby8x0qn7cy1zhxzc0wyi7bm30pkvijhn5h5afjpylsy"; depends=[boot]; }; @@ -13872,9 +13924,9 @@ in with self; { parqr = derive2 { name="parqr"; version="0.1.0"; sha256="11956dvv46sgpmbv429c24wxdhfqvc07jxc1i4yymyz1l8wgr3yb"; depends=[arrow magrittr purrr]; }; parseRPDR = derive2 { name="parseRPDR"; version="0.2.1"; sha256="1k4153bhf623xla6b174as4n8fh8ic0wnw8psxwa2vj3q3nifwbx"; depends=[bigmemory data_table doParallel foreach readr reticulate stringr]; }; parsec = derive2 { name="parsec"; version="1.2.5"; sha256="1qd9gyb6zkahql74x9nds72fmx0i5cyg9kank929cz5iziqf85y5"; depends=[igraph netrankr]; }; - parsedate = derive2 { name="parsedate"; version="1.2.1"; sha256="05l6f1n3dsm383w7jfg3j38klvmzzfvc7qi9zr5ij13rljj8s1vb"; depends=[rematch2]; }; + parsedate = derive2 { name="parsedate"; version="1.3.0"; sha256="1c2cpsvma3fkx6zp191bpfvf5rmpsr13g8rzqk6ycyb0n7b9k4qy"; depends=[]; }; parsermd = derive2 { name="parsermd"; version="0.1.2"; sha256="15fy5vgzbrxq1yj4bgd0q1n5gjwvfh6s03ar5mj3hpp5mz6qmsdg"; depends=[BH checkmate cli dplyr lifecycle magrittr pillar purrr Rcpp readr rlang rmarkdown tibble tidyr tidyselect withr yaml]; }; - parsnip = derive2 { name="parsnip"; version="0.1.7"; sha256="12chngdzplwkk1c9k8y7cwaqlyy72yamlknp7ksg7g9p3b58f1fb"; depends=[dplyr generics globals glue hardhat lifecycle magrittr prettyunits purrr rlang tibble tidyr vctrs]; }; + parsnip = derive2 { name="parsnip"; version="0.2.0"; sha256="0g213c91lzwq9hd22yxkj3igqw04czncnbc4jddnpghp4gpfn1kn"; depends=[cli dplyr generics ggplot2 globals glue hardhat lifecycle magrittr prettyunits purrr rlang tibble tidyr vctrs withr]; }; partDSA = derive2 { name="partDSA"; version="0.9.14"; sha256="1kp0cdsdjiay349jz22iqfzvspny8s343cfan8xahgf931k9h8p6"; depends=[survival]; }; partR2 = derive2 { name="partR2"; version="0.9.1"; sha256="06ky0hhrq0mcsn9rwrzvwn0rrjj0l8rxs0hqp10668gdq5hjk8bn"; depends=[dplyr ggplot2 lme4 magrittr pbapply purrr rlang tibble tidyr]; }; partialOR = derive2 { name="partialOR"; version="0.9"; sha256="02vbvln8lswysaafpxq5rxb6crp7yhlc13i42kybv8fr10jaagjj"; depends=[nnet]; }; @@ -13927,7 +13979,7 @@ in with self; { paws = derive2 { name="paws"; version="0.1.12"; sha256="0kn1z045r106fwqcaz52hb02bhrcblh479cajfjiq480s1iljcw6"; depends=[paws_analytics paws_application_integration paws_compute paws_cost_management paws_customer_engagement paws_database paws_developer_tools paws_end_user_computing paws_machine_learning paws_management paws_networking paws_security_identity paws_storage]; }; paws_analytics = derive2 { name="paws.analytics"; version="0.1.12"; sha256="04gnaxmj21l312xkrsd9bisi0bz9h6h5fyhwlqylcxi077z1yb2g"; depends=[paws_common]; }; paws_application_integration = derive2 { name="paws.application.integration"; version="0.1.12"; sha256="0llyd9hc679pad1ih0rcc38q5xxpzinhwrl8cvrkgsjgbc3agq42"; depends=[paws_common]; }; - paws_common = derive2 { name="paws.common"; version="0.3.15"; sha256="0kj5b4253j4rljkj0ibh21kh9r1yq9idz9vf1f4ag775ivsc2dk5"; depends=[base64enc digest httr jsonlite xml2]; }; + paws_common = derive2 { name="paws.common"; version="0.3.16"; sha256="0mdbnbjprghiwz4i9abh62l5q6mncz3iq76wxvj7ncinf89kd83w"; depends=[base64enc digest httr jsonlite xml2]; }; paws_compute = derive2 { name="paws.compute"; version="0.1.12"; sha256="1km6fng6il5fcjlrbbndahsw2dr2ql83hwac9wlpd67zm3wy9lky"; depends=[paws_common]; }; paws_cost_management = derive2 { name="paws.cost.management"; version="0.1.12"; sha256="0in4f8ygw5g2v6vl3lz2y0v51llglh8b1ymbd04d54xxlgn83knh"; depends=[paws_common]; }; paws_customer_engagement = derive2 { name="paws.customer.engagement"; version="0.1.12"; sha256="0ac6hzn4ilfjhzdmc9x80999fl18cz16mky31qd3y09m93w2xkdj"; depends=[paws_common]; }; @@ -13963,18 +14015,18 @@ in with self; { pcaPP = derive2 { name="pcaPP"; version="1.9-74"; sha256="1dlrz5plb8b89vr3j6sn9jwryyhcwflqkiilxkybbr379m1pp0sh"; depends=[mvtnorm]; }; pcadapt = derive2 { name="pcadapt"; version="4.3.3"; sha256="01wvcflfsnlsq23vq03n870fxsab3ab29k26nqlqxw82lbvx99s3"; depends=[bigutilsr data_table ggplot2 magrittr mmapcharr Rcpp rmio RSpectra]; }; pcal = derive2 { name="pcal"; version="1.0.0"; sha256="07119k5f4h9jc48bicl4q5i7bdrkha3rz22r6g44c8ilnkvjhw6j"; depends=[Rdpack]; }; - pcalg = derive2 { name="pcalg"; version="2.7-4"; sha256="0yph4w5hvw8ss8w6wkpka4crk9nwmm6d091gz3pr1vv2qifx98ii"; depends=[abind bdsmatrix BH clue corpcor fastICA ggm graph igraph RBGL Rcpp RcppArmadillo robustbase sfsmisc vcd]; }; + pcalg = derive2 { name="pcalg"; version="2.7-5"; sha256="136w94s0pi5llyfkh7vdff94yl3x6ajbnzb112fd485wr60f7d5x"; depends=[abind bdsmatrix BH clue corpcor fastICA ggm graph igraph RBGL Rcpp RcppArmadillo robustbase sfsmisc vcd]; }; pcalls = derive2 { name="pcalls"; version="1.0"; sha256="1vdgvrzfv69p3p5zc9i6gxq53f36s0mia4idzrbsda661f1bhmxk"; depends=[]; }; pcatsAPIclientR = derive2 { name="pcatsAPIclientR"; version="1.0.0"; sha256="07klw04zq3q18d13grmgjl4fywby7bazxm28v25snrim33n2ybhp"; depends=[httr jsonlite testthat]; }; pccc = derive2 { name="pccc"; version="1.0.5"; sha256="0jh8yadks76ip9jmgvld9nycdm74f5gllkyhfmnrir8vi6xwvbad"; depends=[dplyr Rcpp]; }; pcdpca = derive2 { name="pcdpca"; version="0.4"; sha256="0ys4hrin0w3f87d1d986wvrfkfwapzj9hz7d7v92r60ns74g7r5m"; depends=[fda freqdom]; }; - pcds = derive2 { name="pcds"; version="0.1.2"; sha256="1xzjs1pyjr0mrr9wdn30vkzp2bzc4ms7cby0pb95ysmvrdxl81d7"; depends=[combinat interp plot3D plotrix Rdpack]; }; + pcds = derive2 { name="pcds"; version="0.1.4"; sha256="0fqd5hxnmg4yybwn7wva224paxhnxx4fb2pymrxp716brxwi7gaf"; depends=[combinat interp plot3D plotrix Rdpack]; }; pcensmix = derive2 { name="pcensmix"; version="1.2-1"; sha256="1yrz4hdj52in8z65qyl18kh7frv75rb8ss5ljv3vbm6yhxi32jnd"; depends=[]; }; pcev = derive2 { name="pcev"; version="2.2.2"; sha256="1l0afcdzkxzkhkc8ln2fzi50hc7nfq46lg6hhx6rrzkb41w82iqw"; depends=[corpcor RMTstat]; }; pcg = derive2 { name="pcg"; version="1.1"; sha256="194j72hcp7ywq1q3dd493pwkn1fmdg647gmhxcd1jm6xgijhvv87"; depends=[]; }; pcgen = derive2 { name="pcgen"; version="0.2.0"; sha256="1v2fmxbj9gz5sg0hizw03ad8cfm9v25708h7fvnf6gb42b2mmyb3"; depends=[ggm graph Hmisc lme4 MASS Matrix pcalg sommer]; }; pch = derive2 { name="pch"; version="2.0"; sha256="1nnawsc6mscwd4z62hhilpn04a9iapx551vvjm3alwk2makhj0wf"; depends=[Hmisc survival]; }; - pchc = derive2 { name="pchc"; version="0.6"; sha256="10mjsw07yiwclh5ziy0bkd6mdwawxs5xv18pwxp7pc6bq2ikjjhb"; depends=[bigstatsr bnlearn Rfast Rfast2 robustbase]; }; + pchc = derive2 { name="pchc"; version="0.7"; sha256="0m5s5mdrgnppy54zalc6c7hjvwfd47jr3yls1jvm7455chz18nr9"; depends=[bigstatsr bnlearn Rfast Rfast2 robustbase]; }; pcmabc = derive2 { name="pcmabc"; version="1.1.1"; sha256="1bacxxgcrgsa7h1baybwwinw3n95cx5wkkfm5cb4iscgk910mfmb"; depends=[ape distory geiger mvSLOUCH phangorn TreeSim yuima]; }; pcnetmeta = derive2 { name="pcnetmeta"; version="2.7"; sha256="0jibi4wylxkisgj740xbibjqs60d5xg9my4sx7vshgfl941y9wcv"; depends=[coda rjags]; }; pco = derive2 { name="pco"; version="1.0.1"; sha256="0k1m450wfmlym976g7p9g8arqrvnsxgdpcazk5kh3m3jsrvrcchf"; depends=[]; }; @@ -13990,11 +14042,11 @@ in with self; { pdc = derive2 { name="pdc"; version="1.0.3"; sha256="0503n7aiy0qrl790yfjvpm7bbyz1i4818rlg96q0fvzb58zqmyvc"; depends=[]; }; pder = derive2 { name="pder"; version="1.0-2"; sha256="0qrf0igxzalvsanj1mqryi0xl9lq0wlpg8bbgasbx3ibq4yqwn0s"; depends=[plm]; }; pdfCluster = derive2 { name="pdfCluster"; version="1.0-3"; sha256="13m7b2wivvf58vyqbysj4r04w0nj2b5x0xnaxip712a6c66x1h7l"; depends=[geometry]; }; - pdfetch = derive2 { name="pdfetch"; version="0.2.5"; sha256="0dfi259yyhydfbrq09m3x8m12bxpmhm1l187b8m85mp38hwpz504"; depends=[curl httr jsonlite lubridate reshape2 stringr XML xml2 xts zoo]; }; + pdfetch = derive2 { name="pdfetch"; version="0.2.6"; sha256="1nqnjmci2653hvqsh1957vn3pkx1n0264v4sk76manrsdk1s42zk"; depends=[curl httr jsonlite lubridate reshape2 stringr XML xml2 xts zoo]; }; pdfminer = derive2 { name="pdfminer"; version="1.0"; sha256="0hm9nalazqcg4n1sqcjan8wm1rvv4lnflmlkrqkj5yhhmza7xkfh"; depends=[checkmate jsonlite]; }; pdfsearch = derive2 { name="pdfsearch"; version="0.3.0"; sha256="0mk1s8b7cdz025xn9kg5xnw388sndhjm80ckf71daxviknrzcscf"; depends=[pdftools stringi tibble tokenizers]; }; pdftables = derive2 { name="pdftables"; version="0.1"; sha256="1gnwjijr89cczchc7yi4w5xiw0dalbymvj23rymm8cfra34iwn5p"; depends=[httr]; }; - pdftools = derive2 { name="pdftools"; version="3.0.1"; sha256="1dcbs5n5y8zi7bbyx491m9ik8kkmjr301x8ms85fmwdfb5a97m8k"; depends=[qpdf Rcpp]; }; + pdftools = derive2 { name="pdftools"; version="3.1.1"; sha256="1lflqf2ypdm4w033vyjykmsy8cl34sp42fzkfgfdhvl2d0xjhl96"; depends=[qpdf Rcpp]; }; pdi = derive2 { name="pdi"; version="0.4.2"; sha256="04lz16al9c3ycdswfpf1fanghglpzbl8pfggr9bjmcn7k2v91ysv"; depends=[dplyr magrittr purrr randomForest readxl stringr tibble tidyr tidyselect]; }; pdist = derive2 { name="pdist"; version="1.2"; sha256="18nd3mgad11f2zmwcp0w3sxlch4a9y6wp8dfdyzvjn7y4b4bq0dd"; depends=[]; }; pdmod = derive2 { name="pdmod"; version="1.0.1"; sha256="04bk9gjg2c55hk6k1hy0m29927s8a5ig6mr4xb89npam68g0pcms"; depends=[mco]; }; @@ -14010,7 +14062,7 @@ in with self; { peakPick = derive2 { name="peakPick"; version="0.11"; sha256="1zf7ff9arm4hkdxrfhb0p8p7npd51icy773g2raaqsfys825xwhm"; depends=[matrixStats]; }; peakRAM = derive2 { name="peakRAM"; version="1.0.2"; sha256="0mj7f8jqkfky61xag2km0svbgvfmif3c1d8ccav6pv1963cg3cvv"; depends=[]; }; pearson7 = derive2 { name="pearson7"; version="1.0-3"; sha256="0vdhhds1lngaff7dkx4b1az3syqw8b22w2jskcrw0m49wp1dbbha"; depends=[]; }; - pec = derive2 { name="pec"; version="2021.10.11"; sha256="1cb63qrc1lwds5kv55jd2mibsw49bpfaj066kwhs1wgby25h8ydi"; depends=[foreach lava prodlim riskRegression rms survival timereg]; }; + pec = derive2 { name="pec"; version="2022.03.06"; sha256="1v43k2l46dz1myas9afyd5cp9a9rw7l71i7k4z8pwlw6aydispnm"; depends=[foreach lava prodlim riskRegression rms survival timereg]; }; pecora = derive2 { name="pecora"; version="0.1.1"; sha256="0l66brd5d24hn279ck785jy4qnxiv9lc3d1czh4f3l25d0hj99xi"; depends=[matrixStats Rcpp RcppArmadillo]; }; pedSimulate = derive2 { name="pedSimulate"; version="1.3.1"; sha256="0rbk8w742i8s9avn9xn8290nkd2mb9aa7p8vzya1dk72x7l51y7b"; depends=[]; }; pedalfast_data = derive2 { name="pedalfast.data"; version="1.0.0"; sha256="02s6igrybcfs8nyxr50iiwclhrwnq3x2x5w886imrlp2wbkf13m4"; depends=[]; }; @@ -14025,7 +14077,7 @@ in with self; { pedquant = derive2 { name="pedquant"; version="0.1.8"; sha256="0rzpnsf6d509f4wkkdcrsw7rfdlvg12mr25ha3dy6a47nqscxlhp"; depends=[curl data_table ggplot2 gridExtra httr jsonlite PerformanceAnalytics plotly readr readxl rvest scales stringi TTR webdriver xml2 zoo]; }; pedsuite = derive2 { name="pedsuite"; version="1.1.0"; sha256="19vbfn8dy7a4hrrv8zsja721lchng55gvc26xlkzx5dl96d2xp9w"; depends=[dvir forrel ibdsim2 paramlink2 pedbuildr pedmut pedprobr pedtools ribd segregatr verbalisr]; }; pedtools = derive2 { name="pedtools"; version="1.1.0"; sha256="0cm2arhn81dl4w26rc701f8b7ldz1r1ad7g7lnw67lq2irnfkgfg"; depends=[kinship2]; }; - peermodels = derive2 { name="peermodels"; version="0.10.2"; sha256="0zmkpfgji375155h8sgz2n1vw2ir9z0n6hd6ha3as3af797bx7f4"; depends=[httr jsonlite stringr]; }; + peermodels = derive2 { name="peermodels"; version="0.10.3"; sha256="116xn5w7rwm9q0m7bj4z29l4hspj2nqdcxzir9dqpdqmf7z58v67"; depends=[curl httr httr2 jsonlite stringr]; }; pegas = derive2 { name="pegas"; version="1.1"; sha256="0ngd0laqbs139ji9hm9kwsm9rm56agw2yyfcplxgqva936l93fl7"; depends=[ape]; }; pema = derive2 { name="pema"; version="0.1.0"; sha256="0z56r7jjigyw3lxf2bvzhfb3a7bs79pj4w7r9qg231z30sf4m1fz"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools sn StanHeaders]; }; pems_utils = derive2 { name="pems.utils"; version="0.2.29.1"; sha256="0nmawl1l2wf77r02qpazqwm5708fk98k7l07wyybviwb1j3x1pqj"; depends=[baseline dplyr ggplot2 lattice latticeExtra loa RColorBrewer Rcpp rlang]; }; @@ -14038,7 +14090,7 @@ in with self; { penalizedSVM = derive2 { name="penalizedSVM"; version="1.1.2"; sha256="03zw95bc6svbnzak9x72s3b8l9gh581mxn2di1fl89gxlh864amd"; depends=[corpcor e1071 lhs MASS mlegp statmod tgp]; }; penalizedclr = derive2 { name="penalizedclr"; version="0.1.0"; sha256="0ka27azfdj4wa1p628b99pkrfjy1x8yjyd3d5g2v8mbsfg3j3bwg"; depends=[clogitL1 penalized survival tidyverse]; }; penaltyLearning = derive2 { name="penaltyLearning"; version="2020.5.13"; sha256="0297rp5zn6d0axl44i3baq2vqvhrx6s8irrysvqdcx1rkishf4j0"; depends=[data_table ggplot2]; }; - pencal = derive2 { name="pencal"; version="1.0.1"; sha256="1vlan2578racspfgysj741k5kl2rs4m77jw03pnvjffcnbazalng"; depends=[doParallel dplyr foreach glmnet lcmm magic MASS Matrix nlme survcomp survival survivalROC]; }; + pencal = derive2 { name="pencal"; version="1.0.2"; sha256="1p9s9d8awc3v1g4qkigpp76gmicmhy7mia8vnfpinwmvik6bazim"; depends=[doParallel dplyr foreach glmnet lcmm magic MASS Matrix nlme survcomp survival survivalROC]; }; pencopulaCond = derive2 { name="pencopulaCond"; version="0.2"; sha256="18hjjxnd0l2ms20ddqkghfbd4as5kq2rgwqzpz4y38k6nw76x511"; depends=[doParallel fda foreach igraph lattice latticeExtra pacotest quadprog TSP]; }; pendensity = derive2 { name="pendensity"; version="0.2.13"; sha256="1wcsib7m2161nqqrmgdvrj7lr8zq6njc9xr935hwfh3qbbgkmfjb"; depends=[fda lattice]; }; penfa = derive2 { name="penfa"; version="0.1.1"; sha256="1r8lq4kvlwlk7q0mdzkrdm9sx7lqq4l27jfxa1zcfh50sk1qlam2"; depends=[GJRM MASS mgcv trust]; }; @@ -14046,7 +14098,7 @@ in with self; { pense = derive2 { name="pense"; version="2.1.0"; sha256="1gz9p3khmv6v4m9aw314zdxdr33qmddb4s2pads0lm5iylngjd4j"; depends=[lifecycle Matrix Rcpp RcppArmadillo rlang]; }; pensim = derive2 { name="pensim"; version="1.3.3"; sha256="1raap4zlqgcqh8x83kp1ss5qcn0p7bwribp4dhfhrh9rl92hh92a"; depends=[MASS penalized]; }; peopleanalyticsdata = derive2 { name="peopleanalyticsdata"; version="0.2.1"; sha256="0ig65y4sl6wagzcvj8wwjw2dblb61hgbsqvp76wvxbhga1q0wnpf"; depends=[]; }; - peperr = derive2 { name="peperr"; version="1.3"; sha256="0pcz7vjl4hgp25a8zv2zcsz3s3ly1zfngkpdnvvviycvq070plv4"; depends=[snowfall survival]; }; + peperr = derive2 { name="peperr"; version="1.4"; sha256="0fcznmpm4f1jvl4yl7aqb637l387g74xk86vj3lwp65jzq6g8i0a"; depends=[snowfall survival]; }; peppm = derive2 { name="peppm"; version="0.0.1"; sha256="1lvk1rjsx39mb93s9pclriw4fmf1sx05s59qqx5m3aqb4q8ffxkg"; depends=[Rcpp]; }; pepr = derive2 { name="pepr"; version="0.4.0"; sha256="0mnigx4lpl397k526sxp7ckrnp59hfrnm9gqcq0nx6j5d7379sp9"; depends=[data_table pryr stringr yaml]; }; peptider = derive2 { name="peptider"; version="0.2.2"; sha256="109z81x6jcsx2651lclff7ak55zb1i89pyi58rxri40aamx4b1x2"; depends=[discreteRV dplyr plyr]; }; @@ -14093,7 +14145,7 @@ in with self; { pgam = derive2 { name="pgam"; version="0.4.15"; sha256="12llflsb32dfvxl3nbyb9bsl9bmd35g5g163hd3axzmg1bgi21ls"; depends=[]; }; pgdraw = derive2 { name="pgdraw"; version="1.1"; sha256="1s1b1izpgryrqsjkdh3yvr137054sipj3kwdkzlx2af8xjr53f85"; depends=[Rcpp]; }; pgee_mixed = derive2 { name="pgee.mixed"; version="0.1.0"; sha256="115vvpv54q80486i3xs2yhmfyx476cf4g1v43q6l7wj3jwzcrvbg"; depends=[copula mvtnorm Rcpp RcppArmadillo]; }; - pgirmess = derive2 { name="pgirmess"; version="1.7.1"; sha256="1jdirknw7hrgjrnpb4va0p58ar5d74vwiyyxvny7synn3bbv8anz"; depends=[boot maptools rgdal rgeos sp spdep splancs]; }; + pgirmess = derive2 { name="pgirmess"; version="2.0.0"; sha256="1j15spsmx1k2kw6vc4brcinpva3wzw4i78626fb5cdrwb8q34i4y"; depends=[boot sf sp spdep]; }; pglm = derive2 { name="pglm"; version="0.2-3"; sha256="16ghdgnpwyqgfa6z6gc93bw933dvazb3alv1867cbn7qnp2gaj3j"; depends=[Formula maxLik plm statmod]; }; pgmm = derive2 { name="pgmm"; version="1.2.5"; sha256="09cpjvhjdncrjs7v2hy6xdqq9p57gd1n8gmaq0p3jmhvrbnsgpfy"; depends=[]; }; pgnorm = derive2 { name="pgnorm"; version="2.0"; sha256="1k9z7pvmranr8m62v7amc0pj6lwzh3wqi79gg3mflifn1mr6c057"; depends=[]; }; @@ -14129,7 +14181,7 @@ in with self; { phenopix = derive2 { name="phenopix"; version="2.4.2"; sha256="0rrp4ch32hzlm727xpwsvfsw7d4qypv7iiq8hrg9az6nb39pbvp7"; depends=[bcp doParallel foreach gtools iterators jpeg plyr raster sp stringr strucchange zoo]; }; phiDelta = derive2 { name="phiDelta"; version="1.0.1"; sha256="0g1g5516p8i1gfpvsy75rdirib8sx1ki2mbf1cvgsnzh70h72gbv"; depends=[]; }; phia = derive2 { name="phia"; version="0.2-1"; sha256="0rv2akl5a488vax4sd9wnx765mch4vvcmg3iyxyljzl5kpqh5r00"; depends=[car Matrix]; }; - philentropy = derive2 { name="philentropy"; version="0.5.0"; sha256="0bs1kk28gjmplnk257cy064hwy360lc378dj4dz3gwsqaj19m7mk"; depends=[dplyr KernSmooth Rcpp]; }; + philentropy = derive2 { name="philentropy"; version="0.6.0"; sha256="1dpf4hfflp4mcql4na46wzcq1flabkipiwyycz9wj5xbxlmcz2hk"; depends=[KernSmooth poorman Rcpp]; }; phm = derive2 { name="phm"; version="0.1.2"; sha256="0jm4w2rj80jz24134y8sj6w7f2icdizs644zfbiq77vzfj1mg8i6"; depends=[data_table shiny slam tm]; }; phonR = derive2 { name="phonR"; version="1.0-7"; sha256="0al2cbynnbvmd90lk1w1g1ppslqq0ng8vbb6bl7m4kqwd2lgv056"; depends=[deldir plotrix splancs]; }; phonTools = derive2 { name="phonTools"; version="0.2-2.1"; sha256="01i481mhswsys3gpasw9gn6nxkfmi7bz46g5c84m13pg0cv8hxc7"; depends=[]; }; @@ -14146,7 +14198,6 @@ in with self; { photobiologySensors = derive2 { name="photobiologySensors"; version="0.5.0"; sha256="122cfy6nsxngd8hnbq5frkgnzrb9fxw83l7mfwk0wy6gx7zsfx5s"; depends=[photobiology]; }; photobiologySun = derive2 { name="photobiologySun"; version="0.4.1"; sha256="15wp8q29m5c4qplind9098ikxmm1r60lw8cm0pa48lmh33638ia3"; depends=[photobiology]; }; photobiologyWavebands = derive2 { name="photobiologyWavebands"; version="0.4.5"; sha256="0lvj5birzzjrkcikg515zgxa2gd06bsbr5i575y9ppxw7kbyqga9"; depends=[photobiology]; }; - photosynthesis = derive2 { name="photosynthesis"; version="2.0.1"; sha256="0drbic4sdx841pzcqvi0gkny7qrnzixlc0wsr6m0llh7pfyl99s6"; depends=[checkmate crayon dplyr furrr future ggplot2 glue gunit magrittr minpack_lm nlme pkgnet purrr rlang stringr tealeaves tidyselect units]; }; phuassess = derive2 { name="phuassess"; version="1.1"; sha256="0jplj9gih32dllx2hw5aqvc9b94sbrbv66s3a5r8mdbpjh93rhng"; depends=[]; }; phyclust = derive2 { name="phyclust"; version="0.1-30"; sha256="0fy9q95vmlm9idpax7alhpfwn30gflnc9md72g91jypyxkx5nr7p"; depends=[ape]; }; phyext2 = derive2 { name="phyext2"; version="0.0.4"; sha256="0j871kgqm9fll0vdgh071z77ib51y8pxxm0ssjszljvvpx1mb8rb"; depends=[ape phylobase]; }; @@ -14170,7 +14221,6 @@ in with self; { phyr = derive2 { name="phyr"; version="1.1.0"; sha256="0jvjxvxx2nz9ra9vp00bmm3dxr2am4zs8cvxij8w4jjyskznxc96"; depends=[ape dplyr gridExtra latticeExtra lme4 Matrix mvtnorm nloptr Rcpp RcppArmadillo tidyr]; }; phyreg = derive2 { name="phyreg"; version="1.0.2"; sha256="0m1psq79zl7h8791pl8g6i0ybda7vgddza8r9mwqhg4sw1q4bzcp"; depends=[]; }; physiology = derive2 { name="physiology"; version="1.2.1"; sha256="1z7xymwgj7bqn0yvcz3q8pvwhpr5vx5qd0x8sayal1vgpqc0nccb"; depends=[Rcpp]; }; - physx = derive2 { name="physx"; version="1.0"; sha256="1b6bx08jzfg4pxicawkn013bqrvqkp19pigxl3iwjrqclvi8mx73"; depends=[celestial cubature data_table docore MASS pracma Rcpp]; }; phytools = derive2 { name="phytools"; version="1.0-1"; sha256="1j0s7ai3mmhsc94m4gka11mnw9ryvrhnf7s8298i21a2xhsmvgxp"; depends=[ape clusterGeneration coda combinat expm maps MASS mnormt nlme numDeriv phangorn plotrix scatterplot3d]; }; phytotools = derive2 { name="phytotools"; version="1.0"; sha256="049znviv2vvzv23biy1l28axm7bc7biwmq4bnn0cnjqgkk48ysz3"; depends=[FME insol]; }; piRF = derive2 { name="piRF"; version="0.1.0"; sha256="04k09ylc6hqw57dlv7sfnisn1167dr550y1j9xl7prvlf3jksg06"; depends=[Rdpack]; }; @@ -14178,8 +14228,8 @@ in with self; { picante = derive2 { name="picante"; version="1.8.2"; sha256="19savjzj44b7ifdxcp02ynj22z4n4ikq2aipc74ljzy3yykmqmjn"; depends=[ape nlme vegan]; }; picasso = derive2 { name="picasso"; version="1.3.1"; sha256="1z7zm88wjp7fia7054l7i55f152iddrjj9wbcpcskhc8s6kfg53c"; depends=[MASS Matrix]; }; pid = derive2 { name="pid"; version="0.50"; sha256="05s3xqf95d4avh7gkr49jsm8jzacbv694c3wgppkkc40zip6vkc7"; depends=[DoE_base FrF2 FrF2_catlg128 ggplot2 png]; }; - piecemaker = derive2 { name="piecemaker"; version="1.0.0"; sha256="0qm9bbsxfmiycbhappzpm98arlwnbck29c75xjyg03m1dbfykvnk"; depends=[purrr rlang stringi stringr]; }; - piecepackr = derive2 { name="piecepackr"; version="1.9.2"; sha256="01vwp0h4955g9vbblsiq1m4mgc6ilx6iryfv07n81yd6b6s0690d"; depends=[backports gridGeometry grImport2 jpeg png purrr R6 stringr tibble]; }; + piecemaker = derive2 { name="piecemaker"; version="1.0.1"; sha256="1i9k88i0rqsbf2564ims69x1pind1xgvljaf9smnnjpi77442jiw"; depends=[rlang stringi stringr]; }; + piecepackr = derive2 { name="piecepackr"; version="1.10.1"; sha256="189dqwh7kkgcvw2j8bqqff2r9si6i89avip0zdm1h941akc66kdv"; depends=[gridGeometry grImport2 jpeg png purrr R6 rlang stringr tibble]; }; piecewiseSEM = derive2 { name="piecewiseSEM"; version="2.1.2"; sha256="1qxwc1drx26p4cgymrfjmg5i7ypl7gddv40virkpmc0qaag9pq36"; depends=[car DiagrammeR emmeans igraph lme4 MASS multcomp nlme]; }; piggyback = derive2 { name="piggyback"; version="0.1.1"; sha256="1d448hkk772d21ix1l1cgq2a0spyjnppyrn1myjcv3dcrfxndn83"; depends=[clisymbols crayon fs gh httr jsonlite lubridate memoise]; }; pillar = derive2 { name="pillar"; version="1.7.0"; sha256="1fqk18vc9ashf12gdqkdi6n1nj5lh324vwhgiib3b2fcb2bghhbq"; depends=[cli crayon ellipsis fansi glue lifecycle rlang utf8 vctrs]; }; @@ -14219,20 +14269,21 @@ in with self; { pkdata = derive2 { name="pkdata"; version="0.1.0"; sha256="1kmcalidw2zidd6i8ds0k057b3187by2k8z6764va43d5garbbcv"; depends=[lubridate]; }; pkgKitten = derive2 { name="pkgKitten"; version="0.2.2"; sha256="0rappcycpkdfdivzl6nn3jq1f42r9jqqmkb33asvhmpjs35fyc3s"; depends=[]; }; pkgbuild = derive2 { name="pkgbuild"; version="1.3.1"; sha256="0j6v5nbp8kg1m3j999gd1qsbdmqcqm1mf28ngmm177miwv8q4skw"; depends=[callr cli crayon desc prettyunits R6 rprojroot withr]; }; - pkgcache = derive2 { name="pkgcache"; version="1.3.0"; sha256="0wclbg0q5gx6dsy58979j3nzpfd6b6y4gxzrihlw37zf7c54cpxx"; depends=[assertthat callr cli curl digest filelock glue jsonlite prettyunits processx R6 rappdirs rlang tibble uuid]; }; + pkgcache = derive2 { name="pkgcache"; version="2.0.1"; sha256="0krgsisnm53vxs4bbz7dm968s9322i6rqdj3bsykqm1hdy669p8s"; depends=[callr cli curl filelock glue jsonlite prettyunits processx R6 rappdirs]; }; pkgcond = derive2 { name="pkgcond"; version="0.1.1"; sha256="03a4blq3niw1mljzylamvmr3l43czqlww4i6n7zb0dlym9x8gs1w"; depends=[assertthat]; }; pkgconfig = derive2 { name="pkgconfig"; version="2.0.3"; sha256="0l1qph8zyi2sic3k2qcd7vlfl7rzfh1q7z7zvjkl5f7y1x2fy3rk"; depends=[]; }; - pkgdepends = derive2 { name="pkgdepends"; version="0.2.0"; sha256="152dpxrsdw5rp0zi0h65p6q0a2hs076wbjpslj5hhqwnwphdpbsr"; depends=[callr cli crayon curl desc filelock glue jsonlite lpSolve pkgbuild pkgcache prettyunits processx ps R6 rematch2 rprojroot tibble withr zip]; }; + pkgdepR = derive2 { name="pkgdepR"; version="1.0.0"; sha256="098fcj1s5rcjxmn57449f4zk9z2w4mqwxkvxxjazd1nj7wa45z8p"; depends=[dplyr magrittr scales viridisLite visNetwork]; }; + pkgdepends = derive2 { name="pkgdepends"; version="0.3.0"; sha256="1pzfm9k8s7w2jacachppgznf8562dshzm23yg7vwd37b7wvr6qxn"; depends=[callr cli crayon curl desc filelock glue jsonlite lpSolve pkgbuild pkgcache prettyunits processx ps R6 rprojroot withr zip]; }; pkgdown = derive2 { name="pkgdown"; version="2.0.2"; sha256="11grx7a2rz6b4kwspm7c8crjav677c22hysnp4bkwh5g8kr5nm2h"; depends=[bslib callr crayon desc digest downlit fs httr jsonlite magrittr memoise purrr ragg rlang rmarkdown tibble whisker withr xml2 yaml]; }; pkgfilecache = derive2 { name="pkgfilecache"; version="0.1.4"; sha256="1fr650yb4wjz6flq4f8p2p5bck5q4kkrhlhlwjn832payq9p4zsp"; depends=[downloader rappdirs]; }; pkggraph = derive2 { name="pkggraph"; version="0.2.3"; sha256="1isiywgm20rypc5qr03p0k7lis76zzd96x5ncbvia644d2n13brm"; depends=[curl data_table dplyr ggnetwork ggplot2 htmltools igraph intergraph Matrix network networkD3 plyr RColorBrewer tibble]; }; pkglite = derive2 { name="pkglite"; version="0.2.0"; sha256="1qjym8kkbmzdz46xn6a4ir8b07ws30s3m7zdrgh98nf0vrv9bkj8"; depends=[cli magrittr remotes]; }; pkgload = derive2 { name="pkgload"; version="1.2.4"; sha256="03yr9mswx9nij27bp21q6c533zx310xwzhwm52dwr7554k42p4fn"; depends=[cli crayon desc rlang rprojroot rstudioapi withr]; }; pkgmaker = derive2 { name="pkgmaker"; version="0.32.2"; sha256="14ggsd24n5g5rvn0wl4w90ipxzmywqikh28llj89q6kpxwnv4iff"; depends=[assertthat codetools digest registry stringr withr xtable]; }; - pkgndep = derive2 { name="pkgndep"; version="1.1.0"; sha256="1fd42v91z2ad6h7vcwy9rbg1s886laapz9n2737vdxywc00ylidb"; depends=[BiocManager brew ComplexHeatmap GetoptLong hash]; }; + pkgndep = derive2 { name="pkgndep"; version="1.1.1"; sha256="0dr5b3ibhvj29f9yvi0v3k41ac6krf85ghxswwr6p4m9vsblmdfx"; depends=[BiocManager BiocVersion brew ComplexHeatmap GetoptLong GlobalOptions hash]; }; pkgnet = derive2 { name="pkgnet"; version="0.4.2"; sha256="0y1b5psn680agsnyiy8yr5m5pzb1y6wsa7gms43nwgj6jjmmvgvv"; depends=[assertthat covr data_table DT futile_logger glue igraph knitr magrittr R6 rlang rmarkdown visNetwork]; }; pkgnews = derive2 { name="pkgnews"; version="0.0.2"; sha256="0kqyy1fchpcyclxh6gly23pkfcf5b3hpsq1bhj4ykzbl4bc002h2"; depends=[]; }; - pkgsearch = derive2 { name="pkgsearch"; version="3.0.3"; sha256="1icn8qw6jpcgbmidqpml4ifpv1i5z2i4hp6b0gpb1xk9dlf6mnl2"; depends=[assertthat curl jsonlite parsedate prettyunits tibble]; }; + pkgsearch = derive2 { name="pkgsearch"; version="3.1.0"; sha256="1xr4k7x3qhny9qpn9sr2img6hakp3k2qy85l1hsirnz7kjk4dgbn"; depends=[curl jsonlite parsedate prettyunits]; }; pkgverse = derive2 { name="pkgverse"; version="0.0.1"; sha256="0lsv7s9vsjvfpy19nxbdlbm363j01wwqqnrp0nlrik590hfq4w83"; depends=[devtools usethis]; }; pkmon = derive2 { name="pkmon"; version="1.0"; sha256="0j2v4zlf7vgy5gld29xiii15m9i85cpiwc25rmzjm02cz2p32c72"; depends=[]; }; pkr = derive2 { name="pkr"; version="0.1.2"; sha256="0m045dlcq3rls1w0smy4jvk3c57ckpqdv8xnz261k1gnnyjmz1k2"; depends=[binr foreign forestplot rtf]; }; @@ -14249,7 +14300,7 @@ in with self; { plantecophys = derive2 { name="plantecophys"; version="1.4-6"; sha256="1qf9a38n8nvvz8dvqra9mdsmkbkhxymjrin0wfis8g1ndf1f406c"; depends=[]; }; plantecowrap = derive2 { name="plantecowrap"; version="1.0.4"; sha256="0syxf63xy5whzw03ys5cxyw7689mr7ihgmqddv53jb8rlbwm84p8"; depends=[ggplot2 minpack_lm plantecophys tidyr]; }; plaqr = derive2 { name="plaqr"; version="2.0"; sha256="15pdb57123m3cahvcsyrrvxjwxvs2f389yxip91gjxn68jf6cx1l"; depends=[quantreg]; }; - plater = derive2 { name="plater"; version="1.0.3"; sha256="1sjf1wkpgz5pa5z149bj40haa4srvf4a66rh3ij25bvgasslshfq"; depends=[dplyr rlang]; }; + plater = derive2 { name="plater"; version="1.0.4"; sha256="0k2ha44ydcf180y44cgxd1haq55k96df39lahs6fji04imh75fii"; depends=[dplyr rlang]; }; platetools = derive2 { name="platetools"; version="0.1.5"; sha256="0qzq7r8ff27cwmxw649jvk9irm6ny2mz4ylmrpzdkahkskfb5arj"; depends=[ggplot2 RColorBrewer]; }; platowork = derive2 { name="platowork"; version="0.0.1"; sha256="09ps20lqli50nhhd3368fwf8cjsbshn428fbbbckbxnynxk5cwsy"; depends=[]; }; plde = derive2 { name="plde"; version="0.1.2"; sha256="1g1b1sgyfxgfkjcr3sdkan8jd6r7yyi0izc83vyj11bdk08jx22h"; depends=[]; }; @@ -14263,7 +14314,7 @@ in with self; { plink = derive2 { name="plink"; version="1.5-1"; sha256="0rn2i9i8af9aq0xgxhpcdchs2952lq2d2sg8x3js0zi3vcml76k0"; depends=[lattice MASS statmod]; }; plinkFile = derive2 { name="plinkFile"; version="0.1.0"; sha256="0803hp822v9rqh4h437q2nmab19yamc4dbyi6iimm67ykp0d5xss"; depends=[]; }; plinkQC = derive2 { name="plinkQC"; version="0.3.4"; sha256="0l5gf7wf33fhzby0n2qzph02v7an2gj2dji1i129hxsxqnynx7dy"; depends=[cowplot data_table dplyr ggforce ggplot2 ggrepel igraph optparse R_utils sys UpSetR]; }; - plm = derive2 { name="plm"; version="2.6-0"; sha256="16i31p9r58i4hrhllgx1m6n9c1rbjpxmhb3s5lbfp68iss8h65yv"; depends=[bdsmatrix collapse Formula lattice lmtest MASS maxLik nlme Rdpack sandwich zoo]; }; + plm = derive2 { name="plm"; version="2.6-1"; sha256="1sanrpphdj6pc9f0xcixm19kkr0nl04zhywf7hklmadby4372318"; depends=[bdsmatrix collapse Formula lattice lmtest MASS maxLik nlme Rdpack sandwich zoo]; }; plmm = derive2 { name="plmm"; version="0.1-1"; sha256="1dfxd1mqqjy2mf7qc6mh4wx5ya9q8fkqgrf01apisb66xxx5zya7"; depends=[Formula nlme sm]; }; pln = derive2 { name="pln"; version="0.2-2"; sha256="03jjmfr1dwz6p652y917g9rv2alyam9ws6xh9ig02d3w78b0rsv9"; depends=[]; }; plogr = derive2 { name="plogr"; version="0.2.0"; sha256="0a8dhzlna79ggyhfr0nncgh15a9n6r0dsz664pz0ah323wpblqqf"; depends=[]; }; @@ -14303,12 +14354,12 @@ in with self; { plsdepot = derive2 { name="plsdepot"; version="0.1.17"; sha256="1i00wxr451xpfy6dnvcm11aqf9106jsh5hj7gpds22ysgm4iq5w4"; depends=[]; }; plsdof = derive2 { name="plsdof"; version="0.3-0"; sha256="1axi8bailiq9mjs0dvasy895b7c62114hdsaygxwz4zymfa6a3ny"; depends=[MASS]; }; plsgenomics = derive2 { name="plsgenomics"; version="1.5-2"; sha256="1pvb50nv6jc99bm2hsxpzazg26y49yi24wwwim5xcjj6j1szbip4"; depends=[boot fields MASS plyr reshape2 RhpcBLASctl]; }; - plsmod = derive2 { name="plsmod"; version="0.1.2"; sha256="08flqzgdsyq6zff9scqij1xfsg04rkhc46vw64lz952340c8kxfr"; depends=[dplyr generics magrittr mixOmics parsnip purrr rlang tibble tidyr]; }; + plsmod = derive2 { name="plsmod"; version="0.2.0"; sha256="1xw3m4z78g1ms4kl6k5jh41q8ip4v3ndm91jv0j9lczb2zqhnvxs"; depends=[dplyr generics magrittr mixOmics parsnip purrr rlang tibble tidyr]; }; plsmselect = derive2 { name="plsmselect"; version="0.2.0"; sha256="044mwdqv5vw0apmx3yhn6xkdmw6baalvb8c6hhmawcs279kwi1m9"; depends=[dplyr glmnet mgcv survival]; }; plsr = derive2 { name="plsr"; version="0.0.1"; sha256="0l413m49zjpb35v0zw8dlxn53nh7fghinbmwfmldl3jgdvay2s7x"; depends=[boot ggplot2 reshape2 shiny]; }; pltesim = derive2 { name="pltesim"; version="1.0"; sha256="0mvqp8di2gwhd9wc9kvnnpxd3hkr9b9lj6g5qlkqcbrgkq6fjahs"; depends=[coreSim ggplot2]; }; plu = derive2 { name="plu"; version="0.2.1"; sha256="12m2mb5h5xniy870akmbzgjp6019pnjjzrdkifmlri8vhbyilvh9"; depends=[backports lifecycle]; }; - plugdensity = derive2 { name="plugdensity"; version="0.8-3"; sha256="1jdmq4kbs8yzgkf9f5dc7c8c52ia68fgavw7nsnc2hnz5ylw1qy9"; depends=[]; }; + plugdensity = derive2 { name="plugdensity"; version="0.8-4"; sha256="0kj7vixfyg4nxq05xgmrhsjd56myz2s1jplhbkmq25kf2r9pb89y"; depends=[]; }; plumber = derive2 { name="plumber"; version="1.1.0"; sha256="0rwr3vx0y2n70bz4aqd9iag9s0ksz4vlvsw16qz84wfcky1b79pi"; depends=[crayon ellipsis httpuv jsonlite lifecycle magrittr mime promises R6 rlang sodium stringi swagger webutils]; }; plumberDeploy = derive2 { name="plumberDeploy"; version="0.2.1"; sha256="0icl35wck94scjyqw6di2sl6fq7zlvd8hm13fw79iqr0wyrich0r"; depends=[analogsea jsonlite lifecycle ssh]; }; plumbertableau = derive2 { name="plumbertableau"; version="0.1.0"; sha256="1wkd15l5s7fs1nzyl83s41wbrx87yhklpw1fb6f3llrgbjn8rd77"; depends=[curl debugme glue htmltools httpuv httr jsonlite knitr later magrittr markdown plumber promises rlang stringi urltools]; }; @@ -14322,21 +14373,21 @@ in with self; { pmcgd = derive2 { name="pmcgd"; version="1.1"; sha256="1pybzvyjmzpcnxrjsas06diy3x83i1r5491s6ccyr63l56hs55d5"; depends=[mixture mnormt]; }; pmclust = derive2 { name="pmclust"; version="0.2-1"; sha256="0wldf0bj406qxmlc7hsbamiak7qcwf8ixng9dfkswh511m3p05jd"; depends=[MASS pbdMPI]; }; pmd = derive2 { name="pmd"; version="0.2.1"; sha256="14xra1d6qx6gxnpiwfsxz200qhmm7s4zy2j8h5kwbvbpnykdyr5c"; depends=[data_table enviGCMS igraph RColorBrewer]; }; - pmetar = derive2 { name="pmetar"; version="0.3.2"; sha256="1vx80pzwks0czvsyh48svvm2gb4jyz1m2r5l60dnia07kpz9wrjd"; depends=[curl dplyr httr lubridate magrittr RCurl stringr tidyr]; }; + pmetar = derive2 { name="pmetar"; version="0.3.3"; sha256="0vfsmdkw62ahhic2gqgsbyphnx2phjkswpn3ymb9gdpnzy45aq6h"; depends=[curl dplyr httr lubridate magrittr RCurl stringr tidyr]; }; pmhtutorial = derive2 { name="pmhtutorial"; version="1.5"; sha256="1hcw8hwpsivbhz86lnzy08q9n8vahnq8f7rmi4xkmg6b44582cqx"; depends=[mvtnorm Quandl]; }; pmlbr = derive2 { name="pmlbr"; version="0.2.0"; sha256="1f0i52ws8ywkz4c0s3ax3qa3qinqhv1k9qlghkama3b027zkl9zn"; depends=[FNN]; }; pmledecon = derive2 { name="pmledecon"; version="0.1.0"; sha256="0bpfx3lkg7wl7b189gl1m2xz72zna98wiw98yx3hvk6ndv55jy03"; depends=[rmutil splitstackshape]; }; - pmml = derive2 { name="pmml"; version="2.5.1"; sha256="1spi8xfj6ab7niidlalnpwfd16800xdvambkmizjdh5w9i5hklzk"; depends=[stringr XML]; }; + pmml = derive2 { name="pmml"; version="2.5.2"; sha256="1faad5yqyh6dx40056w74vlyw4wxjgh41jv8b2vf2gh26laf22kk"; depends=[stringr XML]; }; pmmlTransformations = derive2 { name="pmmlTransformations"; version="1.3.3"; sha256="0315kb5x04pidpzr04yaxyynp0mz4ilzp7vkspq4agjkds5hyc88"; depends=[]; }; + pmparser = derive2 { name="pmparser"; version="1.0.4"; sha256="0qf71w6m6cgmx2isizadihjxildqrxygm8vm906fb13ydxslj1xq"; depends=[data_table DBI foreach glue iterators jsonlite R_utils RCurl withr xml2]; }; pmpp = derive2 { name="pmpp"; version="0.1.1"; sha256="1srmkih6zsyf8yf1f045xy1afcz0if6nf1ncslgrq6rgm7330lkw"; depends=[data_table dplyr ggplot2 magrittr MASS Matrix minqa moments plm pracma]; }; pmr = derive2 { name="pmr"; version="1.2.5"; sha256="0dq97dfjmgxlhr3a2n20vyyzfmamcicw878hdxpw31lw02xs6yls"; depends=[]; }; - pmsampsize = derive2 { name="pmsampsize"; version="1.1.1"; sha256="09z1bhqk451jw5knl58mr3hs1il66hq40g2a9960gz55a8jj6fva"; depends=[]; }; + pmsampsize = derive2 { name="pmsampsize"; version="1.1.2"; sha256="0msbkjpzssgkc4ndx9s1rb8mgg07bx7fdlq48j5s8ak8n1gwdkyk"; depends=[]; }; pmultinom = derive2 { name="pmultinom"; version="1.0.0"; sha256="0p2amb3y4jl24r21fii1qpmdbn5pfgywrx8k7x1jxpg49rk7k0rp"; depends=[fftw]; }; pmwg = derive2 { name="pmwg"; version="0.2.0"; sha256="1f1r66ml24ys7nx5558c189a4gcaqkr16y87dmi4ravick9l5yfi"; depends=[checkmate coda condMVNorm MASS MCMCpack mvtnorm]; }; pmxTools = derive2 { name="pmxTools"; version="1.2.1"; sha256="0r5y09ab6k31d7fbd5pn8lzaafq1ix2lrjci1bsvg0wwcxmdipw6"; depends=[chron data_tree DiagrammeR dplyr ggplot2 ggrepel gridExtra magrittr MASS stringr xml2]; }; png = derive2 { name="png"; version="0.1-7"; sha256="0g2mcp55lvvpx4kd3mn225mpbxqcq73wy5qx8b4lyf04iybgysg2"; depends=[]; }; pnmtrem = derive2 { name="pnmtrem"; version="1.3"; sha256="0053gg368sdpcw2qzydpq0c5v2cxdlwgf5k68cbw0yx41csjgvz0"; depends=[MASS]; }; - pnn = derive2 { name="pnn"; version="1.0.1"; sha256="1s6ib60sbdas4720hrsr5lsszsa474kfblqcalsb56c84gkl42ka"; depends=[]; }; poLCA = derive2 { name="poLCA"; version="1.4.1"; sha256="0bknnndcxsnlq6z9k1vbhqiib1mlzlx4badz85kc7a3xbrdrfs9f"; depends=[MASS scatterplot3d]; }; pocketapi = derive2 { name="pocketapi"; version="0.1"; sha256="0n4fyx4ldm14zy3pz7gygwhahi3p25misvxlmy8l9kqqr51fg26a"; depends=[dplyr glue httr jsonlite magrittr purrr tibble usethis]; }; pocrm = derive2 { name="pocrm"; version="0.13"; sha256="0d4iggxjbl95fz872q9v1wr30nga39sdd5dvwa2zrrm73ak81cz3"; depends=[dfcrm nnet]; }; @@ -14353,20 +14404,20 @@ in with self; { poisDoubleSamp = derive2 { name="poisDoubleSamp"; version="1.1"; sha256="13wyj9jf161218y4zjv2haavlmanihp9l59cvh7x8pfr9dh2dwr8"; depends=[Rcpp]; }; poisFErobust = derive2 { name="poisFErobust"; version="2.0.0"; sha256="1i6y3745i385y3r45i0xk7ciw1k6brmn709k5qhx8xphq0k4an5n"; depends=[data_table glmmML]; }; poisbinom = derive2 { name="poisbinom"; version="1.0.1"; sha256="0mjxg0s3nck7qrmq4bbrhwxfwr6fqml54s9k8q1mkfzlifa7qyf7"; depends=[Rcpp]; }; - poismf = derive2 { name="poismf"; version="0.3.1-3"; sha256="0li2v84rvyk413h06393ccq5rp0mjy8359frq83k94ii946kf2zl"; depends=[Matrix]; }; + poismf = derive2 { name="poismf"; version="0.4.0"; sha256="0hrmirwri30p68m5l6icjkiygkb8950cl6m95xq9caybkl6yjpck"; depends=[Matrix]; }; poisson = derive2 { name="poisson"; version="1.0"; sha256="1diyf1b84sr6iai3ghd3kcp6fc6w7fan49wzs1lzvxxsmp15ag2d"; depends=[]; }; poisson_glm_mix = derive2 { name="poisson.glm.mix"; version="1.2"; sha256="0328m279jfa1fasi9ha304k4wcybzr7hldww7wn0cl7anfxykbv8"; depends=[]; }; poissonMT = derive2 { name="poissonMT"; version="0.3-5"; sha256="14qkc8qz3423b13gp6gsp8cbb1nv9wwjjfa4i9zc15qy5i99ha26"; depends=[checkmate MASS robcbi robustbase]; }; - poissonreg = derive2 { name="poissonreg"; version="0.1.1"; sha256="0ip17j69b7qfyb691f3qlwydp0qayxrbww63nq8jnh8b92lvvxxs"; depends=[dplyr generics glue parsnip purrr rlang tibble tidyr]; }; + poissonreg = derive2 { name="poissonreg"; version="0.2.0"; sha256="0j6435gqc3cmcx7bfvj926s8hyhkiksjavr69iwbdlw0gw3s20j3"; depends=[dplyr generics glue parsnip purrr rlang tibble tidyr]; }; poistweedie = derive2 { name="poistweedie"; version="1.0.1"; sha256="0236cz8fn3la7df8mk1la8hmr0zzjc1majnq8p0c8grma833j6kp"; depends=[]; }; poker = derive2 { name="poker"; version="0.8.8"; sha256="14ik77440z22k4kwq0p1fn7adzi0p8mh8j8hd7ayinvrab4b5r85"; depends=[]; }; polaroid = derive2 { name="polaroid"; version="0.0.1"; sha256="0m3jbiz4n7mgbbdkd28m6dqsclyjcgshpxd6ws8df7zchx7fch07"; depends=[argonDash argonR colourpicker ggplot2 hexSticker png shiny shinyWidgets]; }; policytree = derive2 { name="policytree"; version="1.1.1"; sha256="0xk3l5cy46br73g8m1gm3dbim72asq0wfsa50mnchkhk42rxv6a3"; depends=[BH grf Rcpp]; }; polimetrics = derive2 { name="polimetrics"; version="1.2.1.14"; sha256="0zzqzcfmvb6a9lav5sdgzhx4637r068q3kyjqk1ykdjg2d7s7lrv"; depends=[car dplyr formula_tools ggplot2 gplots MASS purrr rlang rstatix stringr tidyverse]; }; poliscidata = derive2 { name="poliscidata"; version="2.3.0"; sha256="1ywfhksc6gcc2xk5lp6s8nn4wib92sv7p3wq92dzabf75q6mscix"; depends=[abind car descr gplots Hmisc plotrix plyr survey weights xtable]; }; - polished = derive2 { name="polished"; version="0.5.0"; sha256="1gpk16lm6il4hdbw7rcgdf02a4npmmf68cx5zv8hv5k2j31ixq0h"; depends=[automagic digest dplyr DT htmltools httr jose jsonlite lubridate purrr R6 rlang shiny shinycssloaders shinydashboard shinyFeedback shinyjs shinyWidgets stringr tibble tidyr uuid yaml]; }; + polished = derive2 { name="polished"; version="0.6.1"; sha256="08n8pf1gqd2fyar9mawlvakg9nj715nx4vfnm8ywzb88gmkr64fg"; depends=[automagic digest dplyr DT htmltools httr jose jsonlite lubridate purrr rlang rmarkdown shiny shinycssloaders shinydashboard shinyFeedback shinyjs shinyWidgets stringr tibble tidyr uuid yaml]; }; polite = derive2 { name="polite"; version="0.1.1"; sha256="15hiifaf63hx0xn453lr0xhdnxqifrgyrgrymp0a9k3j7qja59jk"; depends=[here httr magrittr memoise ratelimitr robotstxt rvest usethis]; }; - politeness = derive2 { name="politeness"; version="0.8.5"; sha256="05lwzz6x5afycha0gikffr21z6rplvlnrsi3x96pg8n6mfr8xgam"; depends=[data_table ggplot2 glmnet quanteda spacyr stringi stringr textir tm]; }; + politeness = derive2 { name="politeness"; version="0.8.6"; sha256="12h7gn8br5mrbp3pyls7ljyrqmf8b110kqdz9vspbc1p4w1g6rz2"; depends=[data_table ggplot2 glmnet quanteda spacyr stringi stringr textir tm]; }; pollen = derive2 { name="pollen"; version="0.82.0"; sha256="0vmggbvacpbdz4zvn3cinip1b0ac44vgbydmsk6698hwgx9iwmfp"; depends=[dplyr lubridate purrr]; }; pollimetry = derive2 { name="pollimetry"; version="1.0.1"; sha256="09zmcwlgzl4fnkdg2m424ibv3izzrm595c7pi4mc3bd1g8sa2ypn"; depends=[brms repmis]; }; pollster = derive2 { name="pollster"; version="0.1.3"; sha256="1b5m5g9v8xbs3zz6as4xvzwaqr39477adi4vzxmjvxjsaij6ih5h"; depends=[dplyr forcats labelled rlang stringr tidyr]; }; @@ -14374,7 +14425,7 @@ in with self; { polspline = derive2 { name="polspline"; version="1.1.19"; sha256="0rhzf735hmbqfn2xbgcln4sqx7m9far72g5gq9mghgkw016kqglm"; depends=[]; }; polyCub = derive2 { name="polyCub"; version="0.8.0"; sha256="1f63ikiz988hdihvgd5f2p897qfgv54ysgp2h8avmlc4cj6hgkgl"; depends=[sp]; }; polyMatrix = derive2 { name="polyMatrix"; version="0.9.16"; sha256="13amrjl0nsyz6d9c9xxgnlkhdiicy8rx27ds5k47r8x48386vz14"; depends=[Matrix polynom]; }; - polyRAD = derive2 { name="polyRAD"; version="1.5"; sha256="12677bbp9hvdr6nkqnl3gi3db2gn7wjvwwm773bhxln9ymh3jnw0"; depends=[fastmatch pcaMethods Rcpp stringi]; }; + polyRAD = derive2 { name="polyRAD"; version="1.6"; sha256="1xvhjzryf35vrnf6iz82g14vbmbbm4g88il02ss5pmvsgxq70x5n"; depends=[fastmatch pcaMethods Rcpp stringi]; }; polySegratio = derive2 { name="polySegratio"; version="0.2-5"; sha256="0djw49mbhd7x6jr0f5qkb9akw3fw3ax4w9xv8iwa5f65q5gbxpdf"; depends=[gdata]; }; polySegratioMM = derive2 { name="polySegratioMM"; version="0.6-4"; sha256="162xj52566kaxgfk7c14170xx07isyjmqb9skvhrdg7sz20lc3l1"; depends=[coda gtools lattice polySegratio]; }; polyaAeppli = derive2 { name="polyaAeppli"; version="2.0"; sha256="0kyz3ap92xz7aqyviyrpggfmicy1gybrx7y19djsmixcwz53zqch"; depends=[]; }; @@ -14393,7 +14444,8 @@ in with self; { polywog = derive2 { name="polywog"; version="0.4-1"; sha256="02qk1cyvkd77mwlvhj1zzzi0bmy7qxz29j2v730wp7rz4w7h5x5n"; depends=[foreach Formula glmnet iterators Matrix miscTools ncvreg Rcpp stringr]; }; pom = derive2 { name="pom"; version="1.1"; sha256="02jv19apn0kmp1ric2cxajlaad2fmsz4nm4izd2c3691vzas7l83"; depends=[matrixcalc]; }; pomcheckr = derive2 { name="pomcheckr"; version="0.1.1"; sha256="0fm2v388ya7v4vrb5rvilghlf49d15jlwz0isf95ldr81a55m9ij"; depends=[assertthat dplyr ggplot2 magrittr rlang stringr tidyr]; }; - pomdp = derive2 { name="pomdp"; version="0.99.3"; sha256="0mj2k3s69acgwl00jknxy9ywb73kgqxv5r7yqjlxxsnlp8rixla4"; depends=[igraph]; }; + pomdp = derive2 { name="pomdp"; version="1.0.0"; sha256="1wj84qj7xssnw0a9985nr529i93z827b1js5i8mdsgxp8fdl1dgd"; depends=[igraph pomdpSolve]; }; + pomdpSolve = derive2 { name="pomdpSolve"; version="1.0.0"; sha256="0iqpp1y8gz3ihifgln7b5xmwjrvripmkkwg6mr4938yqv7103mz1"; depends=[]; }; pomodoro = derive2 { name="pomodoro"; version="3.3.0"; sha256="170lvp27gyn189kcpn7nmnkfq2pj6i1ihxqjnf37h7m74msn64si"; depends=[caret dplyr gbm ipred pROC randomForest readr tibble]; }; pomp = derive2 { name="pomp"; version="4.1"; sha256="1yv29iqzzqdfr34z98x0l8j3s3c45jhaqvb83njv996g11wxbkw4"; depends=[coda deSolve digest magrittr mvtnorm plyr reshape2]; }; pompom = derive2 { name="pompom"; version="0.2.1"; sha256="09jy4lrb2p71yk604ndfhqfz6znlc3bq72k42f0d1i1a8g3by8h6"; depends=[ggplot2 lavaan qgraph reshape2]; }; @@ -14411,7 +14463,7 @@ in with self; { popPyramid = derive2 { name="popPyramid"; version="0.1.1"; sha256="1fvq63d0pjhpzyf6pb2v5w9wy0pskiv2n07jipg98bgyiih1w584"; depends=[dplyr ggplot2 tibble]; }; popRF = derive2 { name="popRF"; version="1.0.0"; sha256="0w3w1ffyy5b8glviib7ryjqzhmfp5aw6am3z8qpvis6l745p7vgh"; depends=[doParallel foreach gdalUtils plyr quantregForest randomForest raster]; }; popReconstruct = derive2 { name="popReconstruct"; version="1.0-6"; sha256="0nmf93dy2qf7z9mafpy99ry53aapbxlismn7drn732r8gvravapx"; depends=[coda]; }; - popbayes = derive2 { name="popbayes"; version="1.0"; sha256="01p0highanjqdslbavykx67ss7w7f5xwczqx1l5pw4gkrvngm992"; depends=[R2jags usethis]; }; + popbayes = derive2 { name="popbayes"; version="1.1"; sha256="04vzz214lrdkzgj8yksb8r81h1mgnbq6pz3r7c115cy4dn0f2m1f"; depends=[R2jags usethis]; }; popbio = derive2 { name="popbio"; version="2.7"; sha256="02dbb2sinn1n8a9dg8lvf35sc8hb14c90mjymz2gk64xdysf0m2j"; depends=[]; }; popdemo = derive2 { name="popdemo"; version="1.3-1"; sha256="0xvqp71spqh5khi2gdzxmj8pp71i6l2qpcgcw8s9xbqwx9w905mq"; depends=[expm MCMCpack]; }; popgenr = derive2 { name="popgenr"; version="0.2"; sha256="164dhizka0yadzihbjqkfs5p0hknw966mq0grigs7r9ppbq9kajh"; depends=[]; }; @@ -14433,7 +14485,7 @@ in with self; { postHoc = derive2 { name="postHoc"; version="0.1.3"; sha256="1l7r9md9iyav5vvjykpsnqv9whspzcmnppfpqm6qy5s5vk6b8zfd"; depends=[igraph multcomp]; }; postcards = derive2 { name="postcards"; version="0.2.3"; sha256="0kc8nbrqw5h14qw47rxl20yz9q0s8gk2g3lg7kcgsx7f1q514qsw"; depends=[rmarkdown rstudioapi]; }; posterdown = derive2 { name="posterdown"; version="1.0"; sha256="13plrrnylw3yldm0md1gr5drccfjk9f2wwlhz6lrmb3px7w5nqs0"; depends=[pagedown rmarkdown yaml]; }; - posterior = derive2 { name="posterior"; version="1.2.0"; sha256="11j3jgk8mykicqi77a6frn0gck7fx0i6sl6g774sqj44m48ig81b"; depends=[abind checkmate distributional matrixStats pillar rlang tensorA tibble vctrs]; }; + posterior = derive2 { name="posterior"; version="1.2.1"; sha256="1qdg22l868daqg2axr36szl1m9z0rfpgx8zmv1x1xwm1hmlf0mxp"; depends=[abind checkmate distributional matrixStats pillar rlang tensorA tibble vctrs]; }; postinfectious = derive2 { name="postinfectious"; version="0.1.0"; sha256="1v327zxxiwc1cdksk6s39lkkgck5dxg169pp3jiqmm7xs35dcl6y"; depends=[]; }; postlightmercury = derive2 { name="postlightmercury"; version="1.2"; sha256="1345ckp50jplcdqp3a250c6mhapqh9322jzpxj5dyqmbg2nmgp9i"; depends=[crul jsonlite purrr rvest tibble xml2]; }; postlogic = derive2 { name="postlogic"; version="0.1.0.1"; sha256="11bpmfn375zpyg90dh44h86cvppzri1smmkn26jyydqjz74f4q9w"; depends=[]; }; @@ -14479,8 +14531,7 @@ in with self; { prLogistic = derive2 { name="prLogistic"; version="1.2"; sha256="1abwz7nqkz2qbyqyr603kl9a3rkad3f4vxhck6a9kl80xrmfrj9s"; depends=[boot Hmisc lme4]; }; prWarp = derive2 { name="prWarp"; version="1.0.0"; sha256="1rx9yby7xwa2bgqa6a1zllan6qfchgfrg2waadmwfmjhcp8qb1mj"; depends=[Morpho]; }; prabclus = derive2 { name="prabclus"; version="2.3-2"; sha256="0hg4d7y1w18jpgvw10z8833bbbcnlkwiasx0wh6iwa2pnnybq8gl"; depends=[MASS mclust]; }; - pracma = derive2 { name="pracma"; version="2.3.6"; sha256="1pmqk7b6c600v6pn0s047p3msl13azwk611zvh05w5f993yq7b0p"; depends=[]; }; - pragma = derive2 { name="pragma"; version="0.1.3"; sha256="1n30a346pph4d8cj4p4qx2l6fnwhkxa8yxdisx47pix376ljpjfx"; depends=[]; }; + pracma = derive2 { name="pracma"; version="2.3.8"; sha256="0r17siivm37k4gp253v9mlg5m7cwqp85h9kk2hbp2wkf81ad80i3"; depends=[]; }; prais = derive2 { name="prais"; version="1.1.2"; sha256="16h3771lr6vn0g92bfpdq7r3wpdkspbhmrl5948p4isc5qxy2cgx"; depends=[lmtest pcse sandwich]; }; praise = derive2 { name="praise"; version="1.0.0"; sha256="1gfyypnvmih97p2r0php9qa39grzqpsdbq5g0fdsbpq5zms5w0sw"; depends=[]; }; praktikum = derive2 { name="praktikum"; version="0.1"; sha256="0kkydgglvqw371fxh46fi86fmdndhwq1n8qj0ynbh2gz1cn86aw1"; depends=[]; }; @@ -14488,7 +14539,7 @@ in with self; { prcbench = derive2 { name="prcbench"; version="1.0.2"; sha256="0ilann11cfmbw7xj7j6y6j5y0hlfjf7wvfbq2hfvlxi87hijh3ka"; depends=[assertthat ggplot2 gridExtra memoise precrec PRROC R6 ROCR]; }; prclust = derive2 { name="prclust"; version="1.3"; sha256="0p0sf8248aigs99py8mpzz743jnrf7n1nv5shag15arxz9yx7zn3"; depends=[Rcpp]; }; prcr = derive2 { name="prcr"; version="0.2.1"; sha256="0k5vl14akqf8qvak6h7a19qxn4wzpyxq7lyvdhxfh8l4gs4ca2l6"; depends=[class dplyr forcats ggplot2 irr lpSolve magrittr purrr tibble tidyr]; }; - pre = derive2 { name="pre"; version="1.0.1"; sha256="1wvwdwn65n98bzrsghqbxhf1hv2mcpizjxvzx00mplm4xjbzkk7g"; depends=[earth Formula glmnet Matrix MatrixModels partykit rpart stringr survival]; }; + pre = derive2 { name="pre"; version="1.0.2"; sha256="1j2jcq51gkqzy1ip4inf9j3z1p9cr134vjf6mfpq4331hp493hql"; depends=[earth Formula glmnet Matrix MatrixModels partykit rpart stringr survival]; }; precintcon = derive2 { name="precintcon"; version="2.3.0"; sha256="1sf0mfqa77aqhbx3hg8pv582ibmfnv6vigqcd3xqsbq7nigy2ms9"; depends=[ggplot2 scales]; }; precisePlacement = derive2 { name="precisePlacement"; version="0.1.0"; sha256="1w48k4kv3xm8br7dgbpx2rcdxjh0g0aw8xa1snqy0ig8a992804b"; depends=[]; }; precisely = derive2 { name="precisely"; version="0.1.2"; sha256="1zzg2fgf58gjq081rklqjf8wxz8mf7rc3vyhbji3j3n6j0x125n4"; depends=[dplyr ggplot2 magrittr purrr rlang shiny shinycssloaders shinythemes tidyr]; }; @@ -14505,7 +14556,6 @@ in with self; { predictrace = derive2 { name="predictrace"; version="2.0.0"; sha256="1bk1l9gai4hyck72h81znsm1dzqwm5wddbz0bm9g5igs6zkar2ka"; depends=[dplyr]; }; predint = derive2 { name="predint"; version="1.0.0"; sha256="043nsjvn88dhwvp5snbhmh64m8iy22ws4l474mbkm3rb488i9is9"; depends=[dplyr lme4]; }; predkmeans = derive2 { name="predkmeans"; version="0.1.1"; sha256="0352c50zlyzn8fczrkinayllj9jp978njjl7dazzkzypx0p20va5"; depends=[e1071 maxLik mgcv Rcpp RcppArmadillo]; }; - predmixcor = derive2 { name="predmixcor"; version="1.1-1"; sha256="0v99as0dzn0lqnbbzycq9j885rgsa1cy4qgbya37bbjd01b3pykd"; depends=[]; }; predtools = derive2 { name="predtools"; version="0.0.2"; sha256="1bp0pvpd6s190q9kylvkcfh61jblbsla4d7rmnqv2rhza71mdfkj"; depends=[dplyr ggplot2 magrittr pROC RConics Rcpp]; }; predtoolsTS = derive2 { name="predtoolsTS"; version="0.1.1"; sha256="0f9fapw9yjdzj6pwcskbyfwjsvg09ahn20vrv4bgi0dx8am291rl"; depends=[caret forecast Metrics tseries TSPred]; }; prefeR = derive2 { name="prefeR"; version="0.1.1"; sha256="1wgbwbmghsnc2cargwndda0xhcdswvzd0nkjq5g895kl8zcwgpyf"; depends=[entropy mcmc]; }; @@ -14522,7 +14572,7 @@ in with self; { presenter = derive2 { name="presenter"; version="0.1.1"; sha256="13q9cn2kglrr37cng9rz3bpl2ipmbiaaf233bn1bw83c6fisrq6m"; depends=[badger berryFunctions dplyr flextable formattable framecleaner janitor lubridate magrittr officer openxlsx purrr randomcoloR rlang rvg stringi stringr tibble tidyr tidyselect]; }; presentes = derive2 { name="presentes"; version="0.1.0"; sha256="0d6zhishc7wxcvvglgw44pc6c172qpxb8i4iw3lqbmji7ash5zpx"; depends=[]; }; preseqR = derive2 { name="preseqR"; version="4.0.0"; sha256="1g2rnnmi45649vpy6z45v5i3wxm54s138ajqrzwi3a5r7x3xnhq1"; depends=[polynom]; }; - presize = derive2 { name="presize"; version="0.2.3"; sha256="0gwavbi9fbwh454n5yg0rwqy13a8zjhs2yj7jhlmjn1bjjmxp8j4"; depends=[kappaSize shiny]; }; + presize = derive2 { name="presize"; version="0.3.1"; sha256="1fmv760c2vgg0cni46fvhlhxs7z94rm2pbxsc8nlh7rn842wv917"; depends=[kappaSize shiny]; }; presmTP = derive2 { name="presmTP"; version="1.1.0"; sha256="134p58zzk8i0whscvl5qdfn4niksypyxavq1m15cvw4zzk4dk6fw"; depends=[mgcv survPresmooth]; }; presser = derive2 { name="presser"; version="1.1.0"; sha256="1slkdfh0wq242adp6a60612sjz117bii3pbahn00bfmnpa9g1wya"; depends=[]; }; prettifyAddins = derive2 { name="prettifyAddins"; version="2.4.0"; sha256="0r8kbcrl5d7wvbk1wc40h1d2xk14r9mwpb4xkm8q74jhaxvpxz4f"; depends=[httr rstudioapi shiny webdriver xml2 XRJulia]; }; @@ -14537,12 +14587,11 @@ in with self; { prevR = derive2 { name="prevR"; version="3.4.1"; sha256="02qfyc5j7rgvwl7a5pr1l41jmgjxxsrc674xfm08hcydwda5clq1"; depends=[directlabels fields foreign GenKern ggplot2 gstat maptools rgdal sp]; }; prevalence = derive2 { name="prevalence"; version="0.4.0"; sha256="0vnmglxj1p66sgkw4ffc4wgn0w4s281fk2yifx5cn4svwijv30q0"; depends=[coda rjags]; }; prevederer = derive2 { name="prevederer"; version="0.0.1"; sha256="0vkx9nrlgp36xbl95lrb5sb5yivxlcw4yvbs8hgbm31kh0vbz32f"; depends=[httr]; }; - previsionio = derive2 { name="previsionio"; version="11.3.3"; sha256="0mx604y4kwj7d4ssnb1i61fyh3cd6df81yhvpjpf2k4bi6ifcx2s"; depends=[data_table futile_logger httr jsonlite magrittr Metrics plotly XML]; }; + previsionio = derive2 { name="previsionio"; version="11.7.0"; sha256="08hrklr3ngphdhp50lkz6ls9nn1bzdvs6xj583spsw4vm7j44yfr"; depends=[data_table futile_logger httr jsonlite magrittr Metrics plotly XML]; }; prevtoinc = derive2 { name="prevtoinc"; version="0.12.0"; sha256="0ypdxcx9gh87a7ih3cw3yai47rzv41qwh4kpk6007ai8jkjv4n9w"; depends=[dplyr purrr rlang tibble]; }; prewas = derive2 { name="prewas"; version="1.1.1"; sha256="16dpwpks0sqfq7pdhbpipb8hnm2viic2dnz1g7v86ar51z8db4xk"; depends=[ape future future_apply phangorn vcfR]; }; priceR = derive2 { name="priceR"; version="0.1.6"; sha256="1c2yxjrd9v5i76hc5dn0hc6k2shy9cs32mvhr579w7n990ksjw23"; depends=[curl dplyr gsubfn jsonlite lubridate purrr stringi stringr]; }; pricesensitivitymeter = derive2 { name="pricesensitivitymeter"; version="1.2.2"; sha256="0clbc1p809rjgqilv548ck7pfbyajkp2i47vxx8yrrdgkx824gpn"; depends=[ggplot2 rlang survey]; }; - prider = derive2 { name="prider"; version="1.0.2"; sha256="0a7n4b2a0p91q8llgn14czfxvi588v62x5azl7nndvjdk6g4cmmy"; depends=[blaster dplyr gplots magrittr purrr Rcpp stringr tibble tidyr]; }; prim = derive2 { name="prim"; version="1.0.20"; sha256="0z07ddpz6r3sbi5141n9a0snzcc26rdlxiivfnacs8zavs1sk73x"; depends=[plot3D scales]; }; primePCA = derive2 { name="primePCA"; version="1.2"; sha256="0w3w50x17q7gwji19m6dx5vq46h8p62alf3axd10mycl609jlbcb"; depends=[MASS Matrix softImpute]; }; primefactr = derive2 { name="primefactr"; version="0.1.1"; sha256="11hi75jwjxrl9p5m8yjwjb20pc9y9vkhi8sjrnisdq2hm53m483w"; depends=[]; }; @@ -14554,7 +14603,7 @@ in with self; { printr = derive2 { name="printr"; version="0.2"; sha256="0lf538m7skrd7cmy0n118y5s0qk48q0xgqvqag20j34if1h44r4a"; depends=[knitr]; }; prinvars = derive2 { name="prinvars"; version="0.1.0"; sha256="1fajvl041sxwf6ydqyixqmxinj0k8d413h332gvkqkyyfmx5gnys"; depends=[Rdpack]; }; prioGene = derive2 { name="prioGene"; version="1.0.1"; sha256="0k1rlvmfhj1m2zp5zaac8wcwjypd6f4dd8fxxsyrzsafp9aw189l"; depends=[AnnotationDbi org_Hs_eg_db]; }; - prioriactions = derive2 { name="prioriactions"; version="0.3.3"; sha256="1gn786sw52bb05jwfrab00hrfw5pn0xhgp9xzmdvnflbz86a1q2p"; depends=[assertthat BH dplyr magrittr Matrix proto Rcpp RcppArmadillo rlang Rsymphony tidyr]; }; + prioriactions = derive2 { name="prioriactions"; version="0.4"; sha256="17nypbjfwk77a6vg33my2x5qi82d80rrkpg5h0m9m31mf74pyraw"; depends=[assertthat BH dplyr magrittr Matrix proto Rcpp RcppArmadillo rlang Rsymphony tidyr]; }; prioritizr = derive2 { name="prioritizr"; version="7.1.1"; sha256="1d2nsbixfn6nk6icb78kiddpgpn7z2gvinmd19laqdj7a3lbknax"; depends=[ape assertthat BH data_table doParallel exactextractr fasterize igraph magrittr Matrix plyr proto raster Rcpp RcppArmadillo rgeos sf slam sp tibble uuid withr]; }; prioritizrdata = derive2 { name="prioritizrdata"; version="0.2.4"; sha256="0027nbkvp8b2w4cciabiqjdyxhjwh47k7dc36p79mkqfarh04rgv"; depends=[raster sp]; }; prioritylasso = derive2 { name="prioritylasso"; version="0.2.5"; sha256="1myci7akab1fg7p72q1hrchkixs7q5lagdsfpmdbvd13yy4q3h5z"; depends=[glmnet survival]; }; @@ -14570,7 +14619,7 @@ in with self; { probFDA = derive2 { name="probFDA"; version="1.0.1"; sha256="093k50kyady54rkrz0n9x9z98z5ws36phlj42j25yip7pzhfd6sv"; depends=[MASS]; }; probably = derive2 { name="probably"; version="0.0.6"; sha256="0g7d6mw4nj6lynbpaa4qbnyzpwgw1bwl44b7zxm6x1wal6p679ga"; depends=[dplyr generics rlang tidyselect vctrs yardstick]; }; probemod = derive2 { name="probemod"; version="0.2.1"; sha256="1cgjr03amssc9rng8ky4w3abhhijj0d2byzm118dfdjzrgmnrf9g"; depends=[]; }; - probout = derive2 { name="probout"; version="1.1.1"; sha256="1hasrvxdig8n3fhzsbmq27050dyanzp1j0qlybnrkb41k9gyljda"; depends=[FNN MASS mclust]; }; + probout = derive2 { name="probout"; version="1.1.2"; sha256="1x7q878xzw1b1c6jfx856akxzcxrwanv67jji2ifkcdx2hgmgvpx"; depends=[FNN MASS mclust]; }; proccalibrad = derive2 { name="proccalibrad"; version="0.14"; sha256="0vr55rpcqh9wvy3bklssrimp42x85w3sanjgshfij657v68vmx46"; depends=[]; }; proceduralnames = derive2 { name="proceduralnames"; version="0.2.1"; sha256="0c8yx4yz62aa80v7ildsacxp2vav3skgffb90kn65nz4wryddq37"; depends=[]; }; processR = derive2 { name="processR"; version="0.2.6"; sha256="1k6ili4vx2s36l9xdvm7livnjr4r1pcdg5f92ivdivarcb3h907w"; depends=[diagram dplyr flextable ggplot2 ggrepel interactions lavaan officer predict3d psych purrr rlang rmarkdown rrtable semTools stringr tidyr tidyselect ztable]; }; @@ -14592,7 +14641,7 @@ in with self; { profileModel = derive2 { name="profileModel"; version="0.6.1"; sha256="01m5nb8cmq0aq555pxk2a99182si65hhmn68yn9nal2j3zl2bp4i"; depends=[]; }; profileR = derive2 { name="profileR"; version="0.3-5"; sha256="0fgc7585a7194c67irafjnx8g2j6mn3qhcfn76c6dh28clp20qp9"; depends=[ggplot2 lavaan RColorBrewer reshape]; }; profmem = derive2 { name="profmem"; version="0.6.0"; sha256="0gg6ja0ifwn9jj42rw1gnyil55sl9r2y5rjb6yjcvqwd5arajp3l"; depends=[]; }; - profoc = derive2 { name="profoc"; version="0.9.0"; sha256="1s9qn17yhxcljnya5cfidv41q731v4283jka9k33brrryk9h2l5c"; depends=[abind Matrix Rcpp RcppArmadillo RcppProgress splines2]; }; + profoc = derive2 { name="profoc"; version="0.9.1"; sha256="033c036ck273zxg0k7qjcvgxm5k05gjxrvnqvyw7hh9g4lgh8824"; depends=[abind Matrix Rcpp RcppArmadillo RcppProgress splines2]; }; profr = derive2 { name="profr"; version="0.3.3"; sha256="00bv1q0qn46nz4zjfs0l2yfh3hk71rajlp2rrlwg442z11k79ap9"; depends=[plyr stringr]; }; proftools = derive2 { name="proftools"; version="0.99-3"; sha256="095pxyyv6k818qwcjygbz1h24k0xkqi1agns8cqh2m5g64aynd70"; depends=[]; }; profvis = derive2 { name="profvis"; version="0.3.7"; sha256="1f86m426pcf90l29hf4hkirzf8f38dihk52bxbdq2gvrrdili5s3"; depends=[htmlwidgets stringr]; }; @@ -14605,6 +14654,7 @@ in with self; { projects = derive2 { name="projects"; version="2.1.3"; sha256="0ljrhswr5sfq051x0aicl9yvwakw9d9drgrmcz9d8qhgw1if0mky"; depends=[dplyr fs lubridate magrittr purrr readr rlang rstudioapi sessioninfo stringr tibble vctrs zip]; }; projmgr = derive2 { name="projmgr"; version="0.1.0"; sha256="1iysxcl6awvp7zbm04zyq4d9659fcz3sy711jnycsxhsk8hsvmc2"; depends=[gh magrittr]; }; projpred = derive2 { name="projpred"; version="2.0.2"; sha256="0nx514mrfh3gv854pr71w5x3zgdnn0kinf5nh7z90q3h7ysry2mg"; depends=[dplyr gamm4 ggplot2 lme4 loo magrittr MASS mgcv optimx Rcpp RcppArmadillo rngtools rstantools tidyverse]; }; + prome = derive2 { name="prome"; version="0.0.0.8"; sha256="1c9jzpapjyfhpxvjw59p7ch99la00c7nhmvdmsxc4fwi0wcj9pb1"; depends=[BH Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; promethee123 = derive2 { name="promethee123"; version="0.1.0"; sha256="0s1wkcrvm32dpqg9ahn10kni1xv3ll7akqz4y6yn1d36km81bf21"; depends=[cowplot ggplot2]; }; promises = derive2 { name="promises"; version="1.2.0.1"; sha256="1dy4cbqw17awh4q8m7cy3anaj0n9iynabfzflb1g94cyj0bq4fld"; depends=[later magrittr R6 Rcpp rlang]; }; promote = derive2 { name="promote"; version="1.1.1"; sha256="1cdz4xqinyzpbbgkxxd4f86n1h8zj88vp5z6w01cxd5ykyjf5411"; depends=[httr jsonlite stringr]; }; @@ -14618,7 +14668,7 @@ in with self; { prophet = derive2 { name="prophet"; version="1.0"; sha256="06mryavky9xj54ig4scqjgpx7i56nwhs53g0zqsbs9f6qxja7gll"; depends=[BH dplyr dygraphs extraDistr ggplot2 lubridate Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tidyr xts]; }; proportion = derive2 { name="proportion"; version="2.0.0"; sha256="0a71f6hz6blb7550m9x0di84vp51yjhnn952301rwlrh3axf6dbr"; depends=[ggplot2 TeachingDemos]; }; propr = derive2 { name="propr"; version="4.2.6"; sha256="16ghgzpwz6q9zlaa0pc8wqv0wpz81c75n7zwjyr1lv9y19qwlkfg"; depends=[fastcluster ggplot2 igraph Rcpp]; }; - prospectr = derive2 { name="prospectr"; version="0.2.2"; sha256="1nlwwz777nlpdcnsn36j6s0gpdb7ria08x20hklmsa49q2aiqfc1"; depends=[foreach iterators lifecycle mathjaxr Rcpp RcppArmadillo]; }; + prospectr = derive2 { name="prospectr"; version="0.2.3"; sha256="1c2p9dy6h6w31v1hviqjr3kkzzzd303s64qhywcjp0ymjvbzlprp"; depends=[foreach iterators lifecycle mathjaxr Rcpp RcppArmadillo]; }; protViz = derive2 { name="protViz"; version="0.7.0"; sha256="0l1pmfr9kmc90rl5s9b0141451rxrjmiiasp3lsvl2x3ps0smqaj"; depends=[Rcpp]; }; protag = derive2 { name="protag"; version="1.0.0"; sha256="1iaw2w1d7hdvlg5vplpqc49wq08dgmm0ifvp2v0ggqb8invvdnw8"; depends=[dplyr ggplot2 RColorBrewer]; }; protein8k = derive2 { name="protein8k"; version="0.0.1"; sha256="11qj4sadhcsp1kk5kjmvzj2jnd3srsm5mp0q9h9khp1ps6dk35yw"; depends=[dplyr ggplot2 gridExtra lattice magick pryr rjson rlang shiny]; }; @@ -14632,7 +14682,7 @@ in with self; { proton = derive2 { name="proton"; version="1.0"; sha256="1mgaw54is8l6ac1rf8s70rj7kv9xgsfdrlvjz01ggfwg7c6pyr3s"; depends=[digest]; }; prototest = derive2 { name="prototest"; version="1.2"; sha256="07g58hq2qdpczqhjsv6dq1bya9rs958r103n91icw5yc19bvyhi2"; depends=[glmnet intervals MASS Rcpp RcppArmadillo]; }; protr = derive2 { name="protr"; version="1.6-2"; sha256="13vgiqkqqq1w2yj5f6i6scag0mr189zmisyvi6fgaw8g9dgxpxan"; depends=[]; }; - protti = derive2 { name="protti"; version="0.2.1"; sha256="1k656bmlm9jysy15ga854ncr20n8xlvj6d26snjbrb47sc4sc9im"; depends=[curl data_table dplyr forcats ggplot2 ggrepel janitor lifecycle magrittr plotly progress purrr readr rlang stringr tibble tidyr]; }; + protti = derive2 { name="protti"; version="0.2.2"; sha256="11g04c7yscvxqixjslyiq7nx1l1rq8ari3mzaiw3afb4y87hp4x5"; depends=[curl data_table dplyr forcats ggplot2 ggrepel httr janitor lifecycle magrittr plotly progress purrr readr rlang stringr tibble tidyr]; }; proustr = derive2 { name="proustr"; version="0.4.0"; sha256="1qp4v4vb1qh137qn7zi1d2g999z17kq6kpyxy9355mj8c49iy8pn"; depends=[attempt rlang SnowballC stringr tidyr tokenizers]; }; provDebugR = derive2 { name="provDebugR"; version="1.0.1"; sha256="0ynz5m1gkaj1wks5l71r3iz7npf3mz0r04jsa8zwg670zsv2x7rf"; depends=[httr jsonlite provGraphR provParseR textutils]; }; provExplainR = derive2 { name="provExplainR"; version="1.1"; sha256="1jgxmpzgigpbdqh3r8gy6h0akv11ssl494h2jscdyb8zpjmc92fg"; depends=[diffobj digest dplyr provParseR stringr]; }; @@ -14640,7 +14690,7 @@ in with self; { provParseR = derive2 { name="provParseR"; version="0.3"; sha256="0cmyb6da9l0822xrzni19r1ha6zzya385hk2ym9rmchvb34lax53"; depends=[jsonlite]; }; provSummarizeR = derive2 { name="provSummarizeR"; version="1.4.2"; sha256="1pfnrvgqzpdhrsyh0y75idwj13zgcdj7ql6frpjmc0f5cggv7q1q"; depends=[dplyr provParseR]; }; provTraceR = derive2 { name="provTraceR"; version="1.0"; sha256="19iillyh5zw64mmr6ik4ci1n2p651xqzxa4iq5bwa70imbzyy5ip"; depends=[provParseR]; }; - provViz = derive2 { name="provViz"; version="1.0.7"; sha256="0bjq8mywgm2jr0m0458wk6n5al7jr1psvh4g31z4qzlrrkfqgzzg"; depends=[]; }; + provViz = derive2 { name="provViz"; version="1.0.8"; sha256="0zdfvr9mj2d7h20ahq2fksqqjg6isbhhf4kwg2brxb5fcb9462a4"; depends=[]; }; provenance = derive2 { name="provenance"; version="3.3"; sha256="0kdpv1gjvgv9nxfsarm1z042xas9d4n2smhrqccs450a2mhb5fxr"; depends=[IsoplotR MASS]; }; proverbs = derive2 { name="proverbs"; version="0.1.0"; sha256="1i3aqlk4xb6zrjb7izyz7m9ys950cc6msvac8ixx74a7s57j99p1"; depends=[cli crayon httr lubridate magrittr purrr]; }; proxirr = derive2 { name="proxirr"; version="0.2"; sha256="0ffnzmd9zy43vzp0mc0ncjwfj5d7p2gzwk8gcwhk1f9yvgiw4wc1"; depends=[]; }; @@ -14672,12 +14722,12 @@ in with self; { psoptim = derive2 { name="psoptim"; version="1.0"; sha256="1yziabkd3h05cfl5jy5l8ji2y3w21acvxsq3inxyh0iwyr8qdkkl"; depends=[]; }; psp = derive2 { name="psp"; version="0.1"; sha256="0ls8nqfddl9yqsz6binjf5smg3vbs5r65dqv92zn6hmb51akf7q5"; depends=[]; }; pspearman = derive2 { name="pspearman"; version="0.3-0"; sha256="1l5mqga7b5nvm6v9gbl1xsspdqsjqyhhdn4gc4qlz6ld7fqfq6cx"; depends=[]; }; - pspline = derive2 { name="pspline"; version="1.0-18"; sha256="1iwsw52miil1v1yl99mzl28qi8gdjr56rlasmh8faqjlpn9z477p"; depends=[]; }; + pspline = derive2 { name="pspline"; version="1.0-19"; sha256="0h7y9l64knx291ms5mlc65dl3ljzgmrfzdqk1rd7iy8x7wcvymds"; depends=[]; }; pspline_inference = derive2 { name="pspline.inference"; version="1.0.4"; sha256="1ijz642igm27xg3928w9ffvykai26aar5awbcilrjbkm6fk7yd4w"; depends=[assertthat dplyr magrittr mgcv plotrix plyr reshape2 rlang]; }; - psqn = derive2 { name="psqn"; version="0.3.0"; sha256="0kb607d8jmxy152s1iigz6qwzrdn38q5bjc5klm8fhkndgj3y91c"; depends=[Matrix Rcpp RcppEigen testthat]; }; + psqn = derive2 { name="psqn"; version="0.3.1"; sha256="05nzyapilhzwjgc3lizg424i28mshmwirpggg79hssjqmqraflpj"; depends=[Matrix Rcpp RcppEigen testthat]; }; psr = derive2 { name="psr"; version="0.1.0"; sha256="0lnszaspilk88hmdjbgid7nh0zrpc57mymchva4kqc3cpckw247a"; depends=[dplyr psych tidyr]; }; psre = derive2 { name="psre"; version="0.1.0"; sha256="01g0p5sfhahjs2q13dcaqk816ch3niv1gxw6fpivih3n92r5yygj"; depends=[boot car cowplot DAMisc dplyr fANCOVA ggplot2 ggrepel lawstat magrittr MASS metap mgcv multcomp normwhn_test nortest rlang sm tibble tidyr]; }; - psrwe = derive2 { name="psrwe"; version="3.0"; sha256="0a8lwz24gyahk7pkyvr0m2386ahgsfx5axx5cd9qmddzzcp5lfhs"; depends=[BH cowplot dplyr ggplot2 randomForest Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders survival]; }; + psrwe = derive2 { name="psrwe"; version="3.1"; sha256="0gmsh0294jzazxw4ss6jys92dckgfh4fqirfcdi3pzr6a7nnam8s"; depends=[BH cowplot dplyr ggplot2 randomForest Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders survival]; }; pssm = derive2 { name="pssm"; version="1.1"; sha256="0r3d1mzc7bcz238lqq4y518400m2dqm5a1fb9gkfiari1ax099lv"; depends=[abind MASS MHadaptive numDeriv]; }; pssmooth = derive2 { name="pssmooth"; version="1.0.3"; sha256="08syh52gjaf72kq01v6b5dljmwi29nvmjmkkgmjb97zsi15z1wd3"; depends=[chngpt MASS np osDesign]; }; pstest = derive2 { name="pstest"; version="0.1.3.900"; sha256="1rhd4vgqpr9yq0pc3xql3nfgl30v20ldywapp9n967ky2dja4k0z"; depends=[glmx MASS]; }; @@ -14688,7 +14738,6 @@ in with self; { psychTools = derive2 { name="psychTools"; version="2.1.12"; sha256="0fqxlggbhi5g016vyiby8g42ll0080fig15p689cas2ydwn5zklk"; depends=[foreign psych]; }; psychmeta = derive2 { name="psychmeta"; version="2.6.2"; sha256="0yacf2d2svb95a95cxa37szxpags156kwmn5knpfyn4hgbwp390g"; depends=[boot curl dplyr ggplot2 mathjaxr metafor progress purrr rlang tibble tidyr]; }; psycho = derive2 { name="psycho"; version="0.6.1"; sha256="1a3qccr9jwrbwkfbrvckkhhk9qygrc5n4mq80kpzx0zy5bylxi0a"; depends=[bayestestR dplyr effectsize ggplot2 insight parameters scales stringr]; }; - psychometric = derive2 { name="psychometric"; version="2.2"; sha256="1b7cx6icixh8k3bv60fqxjjks23qn09vlcimqfv2x3m3nkf8p1s9"; depends=[multilevel nlme]; }; psychomix = derive2 { name="psychomix"; version="1.1-8"; sha256="0lfhfcmrk65gkr1yp317b515vmadbcf0vjcnc76d07yp6yfkz5qw"; depends=[flexmix Formula lattice modeltools psychotools]; }; psychonetrics = derive2 { name="psychonetrics"; version="0.10"; sha256="09jv7ladas5yfj51nv323z2hgyamd6q40vi07wfypimpi3h4szyh"; depends=[abind combinat corpcor dplyr GA glasso IsingSampler lavaan magrittr Matrix mgcv numDeriv optimx pbapply pbv psych qgraph Rcpp RcppArmadillo rlang roptim tidyr VCA]; }; psychotools = derive2 { name="psychotools"; version="0.7-0"; sha256="11gybrf9d90nbqfm76qr2z9y4bn498j1csg5zir38k5inpw5bk3x"; depends=[]; }; @@ -14703,7 +14752,7 @@ in with self; { ptest = derive2 { name="ptest"; version="1.0-8"; sha256="1d30a23yknf7xgqj8adgr36pnh9dpffl1v5fq682f26fk3ss30qp"; depends=[quantreg]; }; ptf = derive2 { name="ptf"; version="0.0.1"; sha256="1s9nzn823z2capil83vcfs7frg8f6bpygx8aw1zz4sacnhvryr52"; depends=[Matrix plyr rARPACK Rcpp RcppArmadillo]; }; ptinpoly = derive2 { name="ptinpoly"; version="2.8"; sha256="126chp92ha48agx5i819bzdij79zbgj32msijvaid3zhxjx7qy1j"; depends=[misc3d]; }; - ptm = derive2 { name="ptm"; version="0.2.4"; sha256="00szxlil7657ciwh17jkk1mv28m5h1la97ksgn3glypf5z7hsrd4"; depends=[bio3d Biostrings curl httr igraph jsonlite muscle RCurl seqinr xml2]; }; + ptm = derive2 { name="ptm"; version="0.2.5"; sha256="0q3j081fhs0pin8zx6m280hc000cdf9dmbmilyf88c0ryd1cx5bb"; depends=[bio3d Biostrings curl httr igraph jsonlite muscle RCurl seqinr xml2]; }; ptmixed = derive2 { name="ptmixed"; version="1.1.1"; sha256="12yjm73grs14gzwnh61qp0vzbikmwfl1f26s9xfclsp6g61k3rzg"; depends=[aod GLMMadaptive lme4 matrixcalc moments mvtnorm numDeriv tweeDEseq]; }; pts2polys = derive2 { name="pts2polys"; version="0.1.3"; sha256="0rmgryv0vds20npvaqvvwrhrx0grfcz9qwdy2w3bx945r0chhw39"; depends=[Rcpp]; }; ptspotter = derive2 { name="ptspotter"; version="1.0.1"; sha256="1yppjmsxx01n9x0a0bbqsaxjixvrzyjq3112p94igg2xpp6h6cvl"; depends=[beepr log4r pryr stringr this_path]; }; @@ -14733,7 +14782,7 @@ in with self; { pushbar = derive2 { name="pushbar"; version="0.1.0"; sha256="1gxarv6x32y6ssrhsq3pyihzcvpnnj7bg0jf2cpcr99da78n1d9b"; depends=[jsonlite shiny]; }; pushoverr = derive2 { name="pushoverr"; version="1.1.0"; sha256="05ma76jhk00m9872f7gb0vwmk2q3l79r1ddaf1slbhgd57l1avk2"; depends=[checkmate cli glue httr rlang]; }; puzzle = derive2 { name="puzzle"; version="0.0.1"; sha256="073n074irsvn4w1jy5xmr6l24a209kn0ypvf1d2zn3p6yd93wzss"; depends=[dplyr kableExtra lubridate plyr readr readxl reshape reshape2 sqldf tidyverse]; }; - pvLRT = derive2 { name="pvLRT"; version="0.3"; sha256="0fhnyj0ax9c4k0vah0p7dlf825abxr45bkcx5ifrgbmwdnj783gl"; depends=[bit64 data_table ggplot2 glue magrittr progress RColorBrewer]; }; + pvLRT = derive2 { name="pvLRT"; version="0.4"; sha256="1rvavmnfcbc6qqd5d4611h54hzvd18m2vwxy6xc6grr2w2rrngn1"; depends=[bit64 data_table ggfittext ggplot2 glue magrittr progress RColorBrewer]; }; pvaluefunctions = derive2 { name="pvaluefunctions"; version="1.6.2"; sha256="10dxzbz6fw01qgfm6mmxb1xy14pwxgif0d603m3x146337pccc7q"; depends=[ggplot2 gsl pracma scales zipfR]; }; pvar = derive2 { name="pvar"; version="2.2.5"; sha256="1a5dxhki5nd5s1d5wwnc1dkg7mdib2s8w1i0l8mdg3f1g3l00klz"; depends=[Rcpp]; }; pvclass = derive2 { name="pvclass"; version="1.4"; sha256="1g6x75qz3xybq1xnik0hzi7mcs0gzzqd3f0iwfkzi5d1zcddnw13"; depends=[Matrix]; }; @@ -14743,7 +14792,7 @@ in with self; { pvsR = derive2 { name="pvsR"; version="0.3"; sha256="1ijmqlcsc8z0aphdd3j37ci8yqsy50wnr2fwn7h8fxbyd12ax2nj"; depends=[httr nnet XML]; }; pwr = derive2 { name="pwr"; version="1.3-0"; sha256="1kfzy73v3z6ipc3kdfkcjrp4b4p5k54nwk796gqi36srm93hgc2v"; depends=[]; }; pwr2 = derive2 { name="pwr2"; version="1.0"; sha256="0zfv7z5yymw310r1sqm8ivsc2pv6dgk2k4b1axmm92gsaj53cn7p"; depends=[]; }; - pwr2ppl = derive2 { name="pwr2ppl"; version="0.2.0"; sha256="0v0f632b0zl4vbzb2x0294xqvsidvckx8b84qmqx5fbwp8jz8kgx"; depends=[afex car dplyr ez lavaan MASS MBESS nlme phia tidyr]; }; + pwr2ppl = derive2 { name="pwr2ppl"; version="0.3.0"; sha256="0ffwsldx9xplf2lqzi0m5a0715437c4g3352r8408n1p53lj2scd"; depends=[afex broom car dplyr ez lavaan lmtest MASS MBESS nlme phia quantreg semTools tidyr]; }; pwrAB = derive2 { name="pwrAB"; version="0.1.0"; sha256="0ifyw40m9gsijw3vm9qb8qk4yydmdixfdpdp45x2hk93j8v61jm1"; depends=[]; }; pwrFDR = derive2 { name="pwrFDR"; version="2.8.9"; sha256="16qlxwhljhf878a7jif2kjj7hvga01bgr8zb6bh555yacxxh4yiz"; depends=[]; }; pwrRasch = derive2 { name="pwrRasch"; version="0.1-2"; sha256="13fr4yfk8aky1vv36pllx673l4lg9q7i661vbyn2zabyizd2rw3b"; depends=[]; }; @@ -14764,7 +14813,7 @@ in with self; { qGaussian = derive2 { name="qGaussian"; version="0.1.8"; sha256="02xy35xg4swr1ldnsbywnz2h0ga1pbsivnj0aqmpll7kvwl9qz4c"; depends=[Rcpp robustbase zipfR]; }; qLearn = derive2 { name="qLearn"; version="1.0"; sha256="1ilxmgazm8gjz8c1hhbp4fccibnvnalxrag8b0rn081zsqmhf094"; depends=[]; }; qMRI = derive2 { name="qMRI"; version="1.2"; sha256="10x59g8awxjib5j5mc1yd5wsibk3z6ki6zifxsg8azl0zblxbscf"; depends=[adimpro aws awsMethods oro_nifti stringr]; }; - qacBase = derive2 { name="qacBase"; version="1.0.2"; sha256="0gm3djmgxh1xgq6592xqh698cvfrbn413ah5raxybnsd51k5rg8p"; depends=[crayon dplyr ggcorrplot ggExtra ggplot2 haven multcompView patchwork PMCMRplus purrr rlang tidyr]; }; + qacBase = derive2 { name="qacBase"; version="1.0.3"; sha256="0rmxmaaa162w1qrbkcm2fd2rnrp2kqjjh6mpszpv1lpfdaq7p4yq"; depends=[crayon dplyr ggcorrplot ggExtra ggplot2 haven multcompView patchwork PMCMRplus purrr rlang tidyr]; }; qad = derive2 { name="qad"; version="1.0.1"; sha256="0b6zpffyxqqp76xajv5sf1ylz8glnsd2ajj91ijdads21hxqfrnw"; depends=[copula cowplot data_table dplyr ggExtra ggplot2 Rcpp viridis]; }; qap = derive2 { name="qap"; version="0.1-1"; sha256="0d2d1ni1camixyi45lfy00f4pn3p063k7bsi8gj5scp6n15mdgb0"; depends=[]; }; qape = derive2 { name="qape"; version="1.1"; sha256="168jcs2p1213k7fdsqvi1hqp9d2y8j2amrbrcxf2cjr5hnck19w9"; depends=[dplyr lme4 Matrix mvtnorm plyr]; }; @@ -14776,6 +14825,8 @@ in with self; { qcc = derive2 { name="qcc"; version="2.7"; sha256="0lc26w7p3d023lfr8v6v75m2vwqg9vi9pdipap19l4vbdq29l4zz"; depends=[MASS]; }; qccrs = derive2 { name="qccrs"; version="0.1.0"; sha256="0lwrmf2809zzdj5f25bb1psh57ibyw90ra41fy2i9vjmgph9wgiq"; depends=[dplyr magrittr purrr tibble]; }; qch = derive2 { name="qch"; version="1.0.0"; sha256="1kizr319kjr6xsgz7n0dhgp8rxr4j1x4bcr5cnifkp6z2zh92vka"; depends=[ks mclust]; }; + qcpm = derive2 { name="qcpm"; version="0.1"; sha256="08y02wdmnjlv5r1li3dm2g9hzbl0jm7krb4q5r9q4nf4fvbsm50m"; depends=[broom cSEM quantreg]; }; + qcr = derive2 { name="qcr"; version="1.4"; sha256="14nilw60p2kcabh9w5k8bvdjqx4lm5lj79qiigg3i372byq5gb7r"; depends=[fda_usc MASS mvtnorm qcc]; }; qcv = derive2 { name="qcv"; version="1.0"; sha256="0hf02l9c1cpzs02mfn9swfc8l635qsvh6xrhj21g19h5rxaf8jwg"; depends=[]; }; qdap = derive2 { name="qdap"; version="2.4.3"; sha256="1fadzq7afavxfhcd8q6xy3g8d7jwy24zz1da2ig9bd8vrk5zjmnx"; depends=[chron dplyr gender ggplot2 gridExtra igraph NLP openNLP openxlsx plotrix qdapDictionaries qdapRegex qdapTools RColorBrewer RCurl reshape2 scales stringdist tidyr tm venneuler wordcloud XML]; }; qdapDictionaries = derive2 { name="qdapDictionaries"; version="1.0.7"; sha256="0jdx7bxmvc4p41jb4fhaagg5jsbsi7gva870cmyia72li52grhyn"; depends=[]; }; @@ -14787,7 +14838,7 @@ in with self; { qgcomp = derive2 { name="qgcomp"; version="2.8.6"; sha256="00wfslhj7hm5qgpbz8zg4a3dwrbvnn0g6m0vcq56mjvfinnip8aw"; depends=[arm future future_apply generics ggplot2 gridExtra pscl survival tibble]; }; qgcompint = derive2 { name="qgcompint"; version="0.6.6"; sha256="13r0nzxwz9w5papxiqkxjw594qljpqqxw1wkrhj2n68ykvbvl1n7"; depends=[arm future future_apply ggplot2 gridExtra qgcomp survival]; }; qgg = derive2 { name="qgg"; version="1.0.4"; sha256="1xyviy73jl76bpv5izlkgf171qrypgv2wm5mi3s06cb7md8psrkb"; depends=[data_table MASS MCMCpack statmod]; }; - qgraph = derive2 { name="qgraph"; version="1.9"; sha256="1ahhzp64jdgki5p2wga5mn8a2n1x2zldgpilrpf7hy5l9nf4imz1"; depends=[abind colorspace corpcor fdrtool ggplot2 glasso gtools Hmisc igraph jpeg lavaan Matrix pbapply plyr png psych Rcpp reshape2]; }; + qgraph = derive2 { name="qgraph"; version="1.9.2"; sha256="0r225b7rnsv6wz41ij0msmqr1xy0iqxh9dbsvjixbi1hvgv91wds"; depends=[abind colorspace corpcor fdrtool ggplot2 glasso gtools Hmisc igraph jpeg lavaan Matrix pbapply plyr png psych Rcpp reshape2]; }; qgshiny = derive2 { name="qgshiny"; version="0.1.0"; sha256="0ydhwg4abn8n9pwnjnwf1n1k854zw31z8f2splzdm5j279lsjg3r"; depends=[rmarkdown shiny]; }; qgtools = derive2 { name="qgtools"; version="2.0"; sha256="1gj7vbam53yr2rnxzfxng1p107bjcyjmyj47cxyzaiv19pznkbmw"; depends=[]; }; qha = derive2 { name="qha"; version="0.0.8"; sha256="0sdf6g6884wn73i237xkwszg2mq8xddhvyy225qzpplh5za4pnhl"; depends=[ade4 FactoClass FactoMineR]; }; @@ -14808,7 +14859,7 @@ in with self; { qpdf = derive2 { name="qpdf"; version="1.1"; sha256="03lnfncw8qd1fwfyqh1mjvnsjr3b63wxbah0wp5g7z7gba90dwbi"; depends=[askpass curl Rcpp]; }; qpmadr = derive2 { name="qpmadr"; version="1.1.0-0"; sha256="0krv3zhr42z2mkkbn2bkglzfxbf06dmd9vnnc3rcyhm1r85n4fbq"; depends=[checkmate Rcpp RcppEigen]; }; qqboxplot = derive2 { name="qqboxplot"; version="0.1.0"; sha256="0807ww7cvc84hmwrwp2q5gy6v0qd01mwhj537403iy9z4z3wsvhv"; depends=[ggplot2]; }; - qqconf = derive2 { name="qqconf"; version="1.1.1"; sha256="1khaipqwhji30jvzn7kh46s7nc8df3w1r3g7c8i48qps3qrimfmh"; depends=[distr dplyr ggplot2 magrittr MASS rlang robustbase]; }; + qqconf = derive2 { name="qqconf"; version="1.2.1"; sha256="195m60wy065yfp3x18hkxn6sr75igg9bcq0rgn8qcfyz4hc2pmgf"; depends=[distr dplyr ggplot2 magrittr MASS Rcpp rlang robustbase]; }; qqman = derive2 { name="qqman"; version="0.1.8"; sha256="1a6qp5wv9bvwjchfw8x4jh48hkynlnfr21a8vqgnswldvwbq7njq"; depends=[calibrate]; }; qqplotr = derive2 { name="qqplotr"; version="0.0.5"; sha256="1ija4ik3bc404yjm5pw4y32krs1gxn6jd05pqmc0ajawydvr4w1r"; depends=[dplyr ggplot2 MASS robustbase]; }; qqr = derive2 { name="qqr"; version="0.0.1"; sha256="1vi4nbm356vahm4hnvy686nysbn4n63p9cjd4i9dm73lhsf9ilmn"; depends=[dplyr rvest stringr tidyverse xml2]; }; @@ -14829,7 +14880,7 @@ in with self; { qrmtools = derive2 { name="qrmtools"; version="0.0-14"; sha256="1gjaq6i0xhsivcmivbn4xxsqasbvf95p1w0rzpycxzgcfarxwwx3"; depends=[ADGofTest lattice Quandl quantmod rugarch xts zoo]; }; qrng = derive2 { name="qrng"; version="0.0-8"; sha256="1yagh7llrg208mdmwyq7gy4c7h20hj4s5ikp6nc3q8pl7avmq3jc"; depends=[copula randtoolbox]; }; qrnn = derive2 { name="qrnn"; version="2.0.5"; sha256="0ligz67kbfg5cmvacnb7y0ms1v0c7mbvbcfsxyfiz543ppl3xn1v"; depends=[]; }; - qs = derive2 { name="qs"; version="0.25.2"; sha256="1gswppmw8rhd7h50hffhss4c4niz0x54r9sc8pgqzy26vkjqlhpy"; depends=[RApiSerialize Rcpp stringfish]; }; + qs = derive2 { name="qs"; version="0.25.3"; sha256="0sxy497v5arjv6lwxng7chkbzrn703waqmgsxv77i7y12ahzdbai"; depends=[RApiSerialize Rcpp stringfish]; }; qsimulatR = derive2 { name="qsimulatR"; version="1.0"; sha256="0d2al6rnsyj58jhwczn2rx09b007s2yjihpk7i65law7v8dmxiaf"; depends=[]; }; qsort = derive2 { name="qsort"; version="0.2.3"; sha256="1xvp29dijfa2207wyw3z09rmffn61fngfy0f00qjk284n1jnnvrg"; depends=[cowplot ggplot2 gridExtra purrr]; }; qst = derive2 { name="qst"; version="0.1.2"; sha256="0f5c4088y9c5fxyy2dyfkp049lnzvys3zyizazxsa82xwkwsbc8a"; depends=[DBI dbplyr dplyr magrittr RSQLite tibble]; }; @@ -14868,13 +14919,13 @@ in with self; { quantable = derive2 { name="quantable"; version="0.3.6"; sha256="15q4phc2j7aihl8f4qzpdwxcvshq2cfzkfcxc8k4qypsxk9a00sb"; depends=[caret dplyr e1071 ggplot2 ggrepel gplots Matrix plyr pROC RColorBrewer readr reshape2 rlang scales stringr tibble tidyr]; }; quantdates = derive2 { name="quantdates"; version="1.0"; sha256="1hyds8rwr1yg740aq4w5fqjrwdf3dl4phf8mj8qsgbb7i0wbbf3q"; depends=[lubridate]; }; quantdr = derive2 { name="quantdr"; version="1.2.0"; sha256="03dhcb5p9kkyl6qvpxbsjlrnjq0970xcr62j15jyhi878llzqk2n"; depends=[dr KernSmooth MTS mvtnorm quantreg]; }; - quanteda = derive2 { name="quanteda"; version="3.2.0"; sha256="0q72jsc6zalnl35qq02z9niissnyax4zxzqzpfpjsmgmxpd797mw"; depends=[fastmatch magrittr Matrix Rcpp RcppArmadillo RcppParallel SnowballC stopwords stringi xml2 yaml]; }; + quanteda = derive2 { name="quanteda"; version="3.2.1"; sha256="102wlx6481fskgdr5wv467n29f666q0qg9kjm0ivqfg9xsbvza12"; depends=[fastmatch magrittr Matrix Rcpp RcppArmadillo RcppParallel SnowballC stopwords stringi xml2 yaml]; }; quanteda_textmodels = derive2 { name="quanteda.textmodels"; version="0.9.4"; sha256="0r2nls93nriw97z0rmmpn2bb8c3jr571hv5slqj68p7ibr06rh1h"; depends=[glmnet LiblineaR Matrix quanteda Rcpp RcppArmadillo RcppParallel RSpectra SparseM stringi]; }; quanteda_textplots = derive2 { name="quanteda.textplots"; version="0.94"; sha256="1as7mpy3ihja5d9nw7c30w0yhaklpmn41bgw2cvpic2rbp5828fa"; depends=[extrafont ggplot2 ggrepel igraph Matrix network quanteda RColorBrewer Rcpp sna stringi]; }; quanteda_textstats = derive2 { name="quanteda.textstats"; version="0.95"; sha256="100125n2l3mhj0clbwpy3cbb84mwf83ix2c67sy8lmmh71vxz2rk"; depends=[Matrix nsyllable proxyC quanteda Rcpp RcppArmadillo RcppParallel stringi]; }; quantification = derive2 { name="quantification"; version="0.2.0"; sha256="116cp88q9cmizxc2a8lsysa1vwyp1y86457fx5qkq5dcm4g721g8"; depends=[car]; }; quantileDA = derive2 { name="quantileDA"; version="1.1"; sha256="0jbklxsy33j7clcw97qq4ijwkrb94v2m11gjcfa38vplfxm9913q"; depends=[]; }; - quantilogram = derive2 { name="quantilogram"; version="2.1.1"; sha256="07mvgbk5qhkaihk2dn5c8cfac2xd9hfglh284sg4jkrkq0cfgrl8"; depends=[np quantreg SparseM]; }; + quantilogram = derive2 { name="quantilogram"; version="2.2.1"; sha256="0gvr93d6jjixcrislym0mna2l3plqhl8adaqiagdvxg4y0adfmf0"; depends=[np quantreg SparseM]; }; quantities = derive2 { name="quantities"; version="0.1.6"; sha256="0kz95q8npiir8nadvfnpnnm9z5jg9mqk7b1fp6l0bj8asmjyw1l3"; depends=[errors Rcpp units]; }; quantkriging = derive2 { name="quantkriging"; version="0.1.0"; sha256="0v6kckgzhgsn3158sc06xszdhmk8sfny10j1qyppxsl2hk89n8jf"; depends=[ggplot2 hetGP Matrix reshape2]; }; quantmod = derive2 { name="quantmod"; version="0.4.18"; sha256="0dbcrncv06iqcbkky95dd7l32xq0hhbnkb0kj8wwzym1jf748h5a"; depends=[curl TTR xts zoo]; }; @@ -14898,7 +14949,7 @@ in with self; { quickPlot = derive2 { name="quickPlot"; version="0.1.6"; sha256="0mffialxdim8f5s0bw9bb7p8dbrfdgq1wqih441x27lnmrvhlsa8"; depends=[backports data_table fpCompare ggplot2 gridBase igraph raster RColorBrewer rgdal rgeos sp]; }; quickReg = derive2 { name="quickReg"; version="1.5.0"; sha256="1l1v3k8albxlaz18l2b2x2ryifq4pbdq6n4q7555hnfcik9rqmw5"; depends=[dplyr ggplot2 nortest psych rlang survival]; }; quickblock = derive2 { name="quickblock"; version="0.2.0"; sha256="0ij4ivpnkjzdixbq7pg4g1xkb031qawadr22qhzp0q210qhmhc0m"; depends=[distances scclust]; }; - quickcheck = derive2 { name="quickcheck"; version="0.0.1"; sha256="1y3h31p81m76vn2d7dfc12nxc725p585agaa5p4wv396i7ccjaik"; depends=[dplyr hedgehog hms purrr]; }; + quickcheck = derive2 { name="quickcheck"; version="0.1.0"; sha256="005xv322bsmjkrfwsj21j3pci868yac9wbgzxnwl4bmcf81ri09v"; depends=[data_table hedgehog hms purrr testthat tibble]; }; quickerstats = derive2 { name="quickerstats"; version="0.0.1"; sha256="0jlczz042701p6j4m60k425m9x3q88m27mmf62ngz80dylcl2fdx"; depends=[curl httr readr tibble]; }; quickmapr = derive2 { name="quickmapr"; version="0.3.0"; sha256="0962qm8ak0wpqld8nrb8rvvb78743zfrfsq2xrwdlql681j2nv8c"; depends=[httr raster rgdal rgeos sf sp]; }; quickmatch = derive2 { name="quickmatch"; version="0.2.1"; sha256="1qfslhjlbjpzigz8n6b7w41g8pwdiwri091ivd5igp1xy5pv8a3w"; depends=[distances sandwich scclust]; }; @@ -14920,7 +14971,7 @@ in with self; { r_proxy = derive2 { name="r.proxy"; version="0.1.0"; sha256="0k7bcgp1d53ps6aalqz764v33mkamz5czdp72fc69zwrfb9rz63w"; depends=[curl jsonlite]; }; r02pro = derive2 { name="r02pro"; version="0.1"; sha256="1zciq86wpykvbd6zmh8b83dl4vpz53isi6hbbrz0h48sqb1g2006"; depends=[learnr]; }; r2d2 = derive2 { name="r2d2"; version="1.0-0"; sha256="1zl0b36kx49ymfks8rm33hh0z460y3cz6189zqaf0kblg3a32nsi"; depends=[KernSmooth MASS sp]; }; - r2d3 = derive2 { name="r2d3"; version="0.2.5"; sha256="1wfr5qnywrvps25z9iwn04n6wwvam4340jwpszxbbawby48kjppn"; depends=[htmltools htmlwidgets jsonlite rstudioapi]; }; + r2d3 = derive2 { name="r2d3"; version="0.2.6"; sha256="15mphywsr0603ipbgzac65n1nj7m77fmw3ypc33p9ng4fllg035r"; depends=[htmltools htmlwidgets jsonlite rstudioapi]; }; r2dRue = derive2 { name="r2dRue"; version="1.0.4"; sha256="1apdq7zj5fhs349wm9g6y06nn33x24pg3gdp4z1frd18qlacf8z5"; depends=[matrixStats rgdal sp]; }; r2dictionary = derive2 { name="r2dictionary"; version="0.1"; sha256="0assylz2ih96l4jily76hp524h5xbnc27ln8yjvk9c4q88yr8xfy"; depends=[rstudioapi stringr]; }; r2dii_analysis = derive2 { name="r2dii.analysis"; version="0.1.12"; sha256="1fnwq5x6mryiafblfn1pks1pf0kca64a9mx3ic9q5f466qjr3flp"; depends=[dplyr glue magrittr r2dii_data rlang tidyr tidyselect zoo]; }; @@ -14932,17 +14983,18 @@ in with self; { r2pmml = derive2 { name="r2pmml"; version="0.26.0"; sha256="15npzyjd5n1zysffhcfp4c0wykk2nhwgs8j2x8fqyn9cv2l8abjk"; depends=[]; }; r2pptx = derive2 { name="r2pptx"; version="0.1.0"; sha256="12p3018b514kk1yxm1xyc0835j34zvpr1fz8k5rpiz30fbxjip58"; depends=[glue officer]; }; r2r = derive2 { name="r2r"; version="0.1.1"; sha256="0vp0ak88m3ssca8b8kxf9w6qkxsdy0qs6cngrr9gqvbrnx0gh9j6"; depends=[digest rlang]; }; - r2rtf = derive2 { name="r2rtf"; version="0.3.2"; sha256="18c430bhf0sk63yvljqmq3qdginp5ybs1j5bl73mmgz7h1p9wdsa"; depends=[]; }; + r2rtf = derive2 { name="r2rtf"; version="0.3.3"; sha256="1a6hbx9cjak2fv5khhq0k4j583qn24sbs5bykz86z530rbwbrc8y"; depends=[]; }; r2shortcode = derive2 { name="r2shortcode"; version="0.1"; sha256="03djy8m146k31xgvwcbrd1nzwj4wdlvvwzgviv80kskgr6ld9jrj"; depends=[magrittr stringr]; }; - r2spss = derive2 { name="r2spss"; version="0.2.0"; sha256="1l3yy4fqnmdndm4mxcn5mnzwcdrsrfgq49z9liivjp587665n8jc"; depends=[car]; }; + r2spss = derive2 { name="r2spss"; version="0.3.0"; sha256="1an0h4zpy0hjnwn6pihchfmbvkzjqd3vdzqnl1hxvs053z5i9549"; depends=[car ggplot2 scales]; }; r2sundials = derive2 { name="r2sundials"; version="5.0.0-10"; sha256="1hv5wq6lxrv57pszxky4xiwhjhjlzxa4fh0flrrmrrk89dygkx9v"; depends=[Rcpp RcppArmadillo rmumps]; }; r2symbols = derive2 { name="r2symbols"; version="0.1"; sha256="1i4sd015dgkv5i89d0cphp3jmn4jn4wqfazklfglysf85b2cm4iw"; depends=[]; }; r3PG = derive2 { name="r3PG"; version="0.1.3"; sha256="188vjzjya3qxi2xgzxxvf6ys97yxgdbjivwc54f4as37k2ad7l6p"; depends=[]; }; r3dmol = derive2 { name="r3dmol"; version="0.1.2"; sha256="06wzszqcy50gks1bss81j1l2a4adi271pnz6310w57g681q1ng19"; depends=[bio3d htmlwidgets magrittr]; }; + r4googleads = derive2 { name="r4googleads"; version="0.1.1"; sha256="1v7nfr6fk9q5dchf3ig4169kv0vx1jrbbsgkdgfhhc2mz3cqck16"; depends=[curl jsonlite]; }; r4lineups = derive2 { name="r4lineups"; version="0.1.1"; sha256="1p0dnrp21zx1l9lqx01jnq54d5ppb8siibv47i4gsp7c7db9ymxc"; depends=[boot dplyr ggplot2 ggrepel here magick magrittr pROC psych purrr]; }; r4ss = derive2 { name="r4ss"; version="1.36.1"; sha256="03xin7avdbg5ayrcdbw5rx9sh6ingjq2kv3405h01vqf1jhkfsxk"; depends=[coda corpcor gdata gplots gtools kableExtra pso truncnorm]; }; r511 = derive2 { name="r511"; version="0.1.1"; sha256="1njsnjf0746cv6x7fznq4cg556fczqcfawwb869r3w9zv0zj1iy9"; depends=[assertthat dplyr httr tibble xml2]; }; - r5r = derive2 { name="r5r"; version="0.6.0"; sha256="0wzkv7m44vrc9zrffvjxlqnf97cjc40kzjfm6w24xz7ic54glc4z"; depends=[checkmate curl data_table httr raster rJava sf sfheaders]; }; + r5r = derive2 { name="r5r"; version="0.7.0"; sha256="095db1bi06np8m4n3zprwnhazpa1r0jns86r24ddzdpm0ppdbga4"; depends=[checkmate curl data_table httr raster rJava sf sfheaders]; }; r6extended = derive2 { name="r6extended"; version="0.1.2"; sha256="1kq1j5rx57053mslj8jx1s0wjvhis7x3y264zw44q4k2x48q9wxs"; depends=[digest hellno magrittr R6]; }; r6methods = derive2 { name="r6methods"; version="0.1.0"; sha256="18q1qd7hkxbk0yilqdk17cp7qbl4c71jv10z732539wcmy8svb1v"; depends=[dplyr glue magrittr miniUI purrr rstudioapi shiny stringr]; }; rADA = derive2 { name="rADA"; version="1.1.9"; sha256="0p47nqm8mki03pq5gzc2r5vx4vixs6hpf7am1fvadgi2bn2jrcl2"; depends=[car dplyr e1071 forestplot ggplot2 gridExtra Hmisc knitr lme4 lmerTest matrixStats openxlsx reshape2 stringr tidyr]; }; @@ -14957,7 +15009,7 @@ in with self; { rBMF = derive2 { name="rBMF"; version="1.1"; sha256="16yg1k7vv88q421nk1a70626c7c54bwnb3x7kiyxv2c0ha00f3g8"; depends=[Matrix Rcpp]; }; rBayesianOptimization = derive2 { name="rBayesianOptimization"; version="1.2.0"; sha256="0gwdzv4wl4n940ph23yhjh0s192k9visvivww5k1kmy2b1j88cva"; depends=[data_table foreach GPfit magrittr]; }; rBeta2009 = derive2 { name="rBeta2009"; version="1.0"; sha256="0ljzxlndn9ba36lh7s3k4biim2qkh2mw9c0kj22a507qbzw1vgnq"; depends=[]; }; - rBiasCorrection = derive2 { name="rBiasCorrection"; version="0.3.2"; sha256="0lnx38bxf1jgq3frlj1419a957h0abl72hpj0hb0hnlja8vq6fx3"; depends=[data_table future future_apply ggplot2 magrittr nls2 polynom]; }; + rBiasCorrection = derive2 { name="rBiasCorrection"; version="0.3.3"; sha256="0ld4agm490zhxgykcy0638pxdr8pgh9kb8kzsizizm7ws6cj3gw4"; depends=[data_table future future_apply ggplot2 magrittr nls2 polynom]; }; rCAT = derive2 { name="rCAT"; version="0.1.6"; sha256="09jyjjbhpm44wrism3zgg56m01yimlcm3xks8g0cq36lsrclcigp"; depends=[pracma rgdal sp]; }; rCBA = derive2 { name="rCBA"; version="0.4.3"; sha256="10rc08gwsf15f4lci8bbgwpwj8n7k1m23hxk633v68g9amla5nvx"; depends=[arules R_utils rJava TunePareto]; }; rCMA = derive2 { name="rCMA"; version="1.1"; sha256="0dswshg80hbgcib5x9w791sh71q5s4435q8sm9dh170v4ngbax0w"; depends=[]; }; @@ -14969,9 +15021,8 @@ in with self; { rDNAse = derive2 { name="rDNAse"; version="1.1-1"; sha256="0cl51q61kwvdsm5f49cjjbzggqam1fnr6gp15cmy6m2yahyxg1lk"; depends=[]; }; rDataPipeline = derive2 { name="rDataPipeline"; version="0.54.1"; sha256="0i0vb7gsjshh1wn0lksdma51xdyn6qw54j02cb0xmzcg896gl2p9"; depends=[assertthat cli configr dplyr git2r httr jsonlite openssl R6 rhdf5 semver usethis yaml]; }; rDecode = derive2 { name="rDecode"; version="0.1.0"; sha256="1d0rrhycw9anhvx6czz7axkzhzqprdgi9sqfglmc962zf1x3hmn2"; depends=[]; }; - rDotNet = derive2 { name="rDotNet"; version="0.9.1"; sha256="18cd5373pdfi1x958llb4cgjqdi1fb7h7m5nkdwcd4xw9hxhinzd"; depends=[Rcpp testthat]; }; rDppDiversity = derive2 { name="rDppDiversity"; version="0.0.2"; sha256="0833v5wkamqipfxpsdxz040q6vlgg9qqpwiaivvh8ar5sci10v88"; depends=[Rcpp]; }; - rEDM = derive2 { name="rEDM"; version="1.10.1"; sha256="0xd00fxxn6m0cg4r4m5sp0wxv28yfz1ldck8bx8m3l6xclvfdvvc"; depends=[Rcpp RcppThread]; }; + rEDM = derive2 { name="rEDM"; version="1.10.2"; sha256="1cg4g47q6vl231279zmaq6w743gcxj05xa9kf47wf3hzp01lhl1r"; depends=[Rcpp RcppThread]; }; rEMM = derive2 { name="rEMM"; version="1.1.0"; sha256="18bpskhrafj0b5rnzisrsk5x5gifqn7dpawcsgdrg7rbnz7y1wzr"; depends=[cluster clusterGeneration igraph MASS proxy]; }; rENA = derive2 { name="rENA"; version="0.2.3"; sha256="067xpw1mgb2y15ld4qc6mnf4b9k7nw8am9qz4ms980wyfp4ffjmj"; depends=[concatenate data_table doParallel foreach magrittr plotly R6 Rcpp RcppArmadillo scales]; }; rFDSN = derive2 { name="rFDSN"; version="0.0.0"; sha256="1ffiqpdzy4ipy2aci22zkih4373ifkjkpvsrza8awhyf9fwqwdsl"; depends=[XML]; }; @@ -14982,6 +15033,7 @@ in with self; { rGammaGamma = derive2 { name="rGammaGamma"; version="1.0.12"; sha256="1051ah6q11qkxj1my4xybbzc8xcqkxfmps8mv2his5cyfllwidbs"; depends=[gsl]; }; rGhanaCensus = derive2 { name="rGhanaCensus"; version="0.1.0"; sha256="1i8z2cfzk64yhvkia1khsmw666dflai1sj8bhd8n2d97a45nb230"; depends=[]; }; rGroovy = derive2 { name="rGroovy"; version="1.3"; sha256="172vm4diygzi4ipmw8bl03k0x3aps0h1vkvwvw539kamy7xb5w98"; depends=[rJava]; }; + rHL7 = derive2 { name="rHL7"; version="1.0.0"; sha256="1irri5a0fb0wmldh7mv9wbd0scg90c9w9cwdcf4dgbvk08ff1831"; depends=[dplyr lubridate matlab randomNames stringi stringr]; }; rHealthDataGov = derive2 { name="rHealthDataGov"; version="1.0.1"; sha256="0lkjprss15yl6n9wgh79r4clip3jndly2ab1lv4iijzxnxay099d"; depends=[bit64 httr jsonlite]; }; rHpcc = derive2 { name="rHpcc"; version="1.0"; sha256="0096z90mmf1j2xpb9034a5ph52m8z6n6xjh3km2vrhw63g3cpwap"; depends=[RCurl XML]; }; rIP = derive2 { name="rIP"; version="1.2.0"; sha256="1f3gbd3ij047n0rh4a7yy6wdjz3b89rki7zaz4y9zgw6bad6ylkl"; depends=[amerika dplyr httr iptools jsonlite]; }; @@ -14997,8 +15049,8 @@ in with self; { rLTP = derive2 { name="rLTP"; version="0.1.4"; sha256="04w432m03xwh0szshsrfw5h7wy43q4lj8z0y07k8w6gsf27cy5bx"; depends=[RCurl]; }; rLakeAnalyzer = derive2 { name="rLakeAnalyzer"; version="1.11.4.1"; sha256="1bwg8mzddsc39km85b41bxp2hwqmb4g5a3010f6yp1qlgcb9rmj1"; depends=[plyr]; }; rLiDAR = derive2 { name="rLiDAR"; version="0.1.5"; sha256="0sw79zr7hdwprlwijlg6qmn7pmpcnhxfr7ycdz09058c0kd815h8"; depends=[bitops deldir geometry plyr raster rgeos rgl sp spatstat_geom]; }; - rMEA = derive2 { name="rMEA"; version="1.2.0"; sha256="1h5flmysyxv668si4ycfkkgairy7balk3nm0dsm91gns9xhvjqs0"; depends=[]; }; - rMIDAS = derive2 { name="rMIDAS"; version="0.3.0"; sha256="1vs77dbd5fs8h61s1pz5zgi10g14707fms1bzisfpp2xnj93ybvg"; depends=[data_table mltools reticulate]; }; + rMEA = derive2 { name="rMEA"; version="1.2.2"; sha256="18manb926yd6a3b6im7g2vf1cbvvdkg15i6zl223npckhna2nbx0"; depends=[]; }; + rMIDAS = derive2 { name="rMIDAS"; version="0.4.0"; sha256="09dh6lc4vb4015vdhif0ybq149x8b1vd139was9r6w65n533iz1x"; depends=[data_table mltools reticulate]; }; rMR = derive2 { name="rMR"; version="1.1.0"; sha256="0da1hclfnnlkp9by6zf2p079643p8nimplr9p3ipbjdy739j344z"; depends=[biglm]; }; rMVP = derive2 { name="rMVP"; version="1.0.6"; sha256="0c3bmn7k5hgw8mgplyhwf6dkgvrxd29yj829wy5j9z1p88gq6wrk"; depends=[BH bigmemory MASS Rcpp RcppArmadillo RcppEigen RcppProgress]; }; rMisbeta = derive2 { name="rMisbeta"; version="1.0"; sha256="1h4vilnndl0gnz9z0sgbywp4zy44718zpiqcqigbjbd4lymi0y61"; depends=[ROC]; }; @@ -15017,7 +15069,7 @@ in with self; { rQCC = derive2 { name="rQCC"; version="2.22.1"; sha256="0ahzc4aqx1aw50fcir4s5zig4lgllbqi7kvk1yddk6z0sgcg5p1r"; depends=[]; }; rRAP = derive2 { name="rRAP"; version="1.1"; sha256="1nzvs8bjkbjraa33azxf9mrxsxh87qhh3qlldrcs5y4fq4ancyqb"; depends=[lars lassoshooting MASS]; }; rRofex = derive2 { name="rRofex"; version="2.0.6"; sha256="0yg3bxadgmn5d7bljzn9bjzy833lfi6bwz24z52f8qcbm1nqchgb"; depends=[dplyr glue httr jsonlite later lifecycle magrittr purrr rlang tibble tidyr websocket]; }; - rSAFE = derive2 { name="rSAFE"; version="0.1.2"; sha256="0m7xzk76armkd86g643fmpif43dri07vrbq348y8hmys1gnx7ikd"; depends=[DALEX dendextend ggplot2 ggpubr ingredients sets]; }; + rSAFE = derive2 { name="rSAFE"; version="0.1.3"; sha256="0vhphn56y2yxll3437mb3zaayhhy4dxk0wxxy7lk6qgxw4xlbk04"; depends=[DALEX dendextend ggplot2 ggpubr ingredients sets]; }; rSCA = derive2 { name="rSCA"; version="3.1"; sha256="0dhd5325x05cbnw34mlipndw5xnncl9kj7kppb2s5bx2gllcdqqd"; depends=[]; }; rSEA = derive2 { name="rSEA"; version="2.1.1"; sha256="18108ds65ykxygbw1s4i5rb1ngzwymv1x3dhcv1lcwkmqplnaar9"; depends=[ggplot2 hommel]; }; rSFA = derive2 { name="rSFA"; version="1.04"; sha256="0gd6ji1ynbb04rfv8jfdmp7dqnyz8pxcl5636fypd9a81fggl0gs"; depends=[MASS]; }; @@ -15026,7 +15078,7 @@ in with self; { rSPDE = derive2 { name="rSPDE"; version="1.1.1"; sha256="0zji1d292nr8bj149vdk0v48jcg6w56cbxr5xhfm7s5b999qrqxf"; depends=[Matrix]; }; rSQM = derive2 { name="rSQM"; version="1.3.14"; sha256="0m69n2pnfv2085dln6p149a5gw0gif9xk00xmad5s9j68hwjdmym"; depends=[dplyr EcoHydRology ggplot2 gsubfn mise ncdf4 qmap reshape2 stringr yaml zoo]; }; rStrava = derive2 { name="rStrava"; version="1.1.4"; sha256="00y400znkwyr6y33wiz0jikpa31a60hdcmsi9x3724zwjh28vynj"; depends=[bitops dplyr geosphere ggplot2 ggrepel googleway httpuv httr magrittr plyr purrr RCurl rvest tibble tidyr V8 XML xml2]; }; - rTG = derive2 { name="rTG"; version="0.2.2"; sha256="0f1syh2v8a0klcz7rvi8nrn1qv8rjl69ssrliqnh2zpy7c6ck9xs"; depends=[brnn dplyr ggplot2 knitr magrittr mgcv]; }; + rTG = derive2 { name="rTG"; version="1.0.0"; sha256="1v2wj2cv26hk5s7vm2l75lqgki28ivhkd0b8kspxw2c56cm82r70"; depends=[brnn dplyr ggplot2 knitr magrittr mgcv]; }; rTLS = derive2 { name="rTLS"; version="0.2.5.2"; sha256="10fkd8ylj9xwvgwnirjw4n6c4vl8y5x8q4mq2zmwlpjryknx82kv"; depends=[alphashape3d boot data_table doSNOW foreach Rcpp RcppArmadillo RcppHNSW RcppProgress rgeos rgl sp]; }; rTRNG = derive2 { name="rTRNG"; version="4.23.1-1"; sha256="0jlkr57afkg6axkdk020rd3nybx1qzwvy1hjgfw8fwvm79x0kpr7"; depends=[Rcpp RcppParallel]; }; rTableICC = derive2 { name="rTableICC"; version="1.0.7"; sha256="1z896675kmm9p5dnmcnsz2205ynf05laqcxvlc9y0g5i0x8rf8v6"; depends=[aster partitions]; }; @@ -15039,10 +15091,10 @@ in with self; { rWishart = derive2 { name="rWishart"; version="0.1.2"; sha256="0wzijc454mrvmggb7a5jqwjbmk0kzr4bmy0iwniz5cn343pr1rri"; depends=[lazyeval MASS Matrix]; }; rYoutheria = derive2 { name="rYoutheria"; version="1.0.3"; sha256="1r63ggy4knwzxnpjkmsn7zwmwfaznm8mmxl7r9ph10wz4sblgygl"; depends=[plyr RCurl reshape2 RJSONIO]; }; ra4bayesmeta = derive2 { name="ra4bayesmeta"; version="1.0-7"; sha256="07fcjqw8w787pcfzjxxwq6160433ms6xk9qrvvm8ybxd7n0f5i44"; depends=[bayesmeta]; }; - rabhit = derive2 { name="rabhit"; version="0.2.0"; sha256="1gakdwz05x4g0jqh71vf18qcbkmpbh8g5bb17j7f9d8sb1kpafpl"; depends=[alakazam cowplot data_table dendextend dplyr fastmatch ggdendro ggplot2 gridExtra gtable gtools htmlwidgets plotly plyr RColorBrewer reshape2 rlang splitstackshape stringi tidyr tigger]; }; + rabhit = derive2 { name="rabhit"; version="0.2.1"; sha256="1hgn04qqpp0pbm8c180wc6g3i4dw0wv54b8p8adhkgg3jhbidyv1"; depends=[alakazam cowplot data_table dendextend dplyr fastmatch ggdendro ggplot2 gridExtra gtable gtools htmlwidgets plotly plyr RColorBrewer readr reshape2 rlang splitstackshape stringi tidyr tigger]; }; rabi = derive2 { name="rabi"; version="1.0.2"; sha256="0jndx1gvsnsv1xrx3ismgvjp7d4kj3436zcawvw32c5klvxx0y4j"; depends=[numbers polynom shiny stringdist]; }; racademyocean = derive2 { name="racademyocean"; version="0.1.0"; sha256="0xgsjg7ck532fzwyn62pn1hq9khkw0i1pdcam09j5l24ny1akajw"; depends=[cli dplyr httr2 pbapply purrr rappdirs retry rlang stringr tidyr withr]; }; - raceland = derive2 { name="raceland"; version="1.1.1"; sha256="1sb56id7h1nm34a7kf6abfxwh4kmnnzc51x23cijq6fd3jm4ggnr"; depends=[comat fasterize plotwidgets raster Rcpp RcppArmadillo rgdal sf]; }; + raceland = derive2 { name="raceland"; version="1.1.2"; sha256="0mkxxqbpq90iw540kzj12352l5r9scgfdj60swqv436jqj21gjah"; depends=[comat fasterize plotwidgets raster Rcpp RcppArmadillo rgdal sf]; }; racir = derive2 { name="racir"; version="2.0.0"; sha256="0qpjnaifx4z1jvyrc8p5jny0ci20w2ri1rs68sv9b93nkaiixnps"; depends=[]; }; ractivecampaign = derive2 { name="ractivecampaign"; version="0.2.0"; sha256="1l7266qryba2zijgs7xj4p073l69q0iin6qgsbnn7dafmggv5mlr"; depends=[cli dplyr httr pbapply retry stringr tidyr]; }; radar = derive2 { name="radar"; version="1.0.0"; sha256="1wh5j3cfbj01jx2kbm9ca5cqhbb0vw7ifjn426bllm4lbbd8l273"; depends=[]; }; @@ -15060,14 +15112,14 @@ in with self; { radous = derive2 { name="radous"; version="0.1.3"; sha256="1pip3givlkzb8i65nz6w724818jjr8j8nizpc3g35r9bvpmn7c2y"; depends=[checkmate curl glue httr readr]; }; radsafer = derive2 { name="radsafer"; version="2.2.6"; sha256="0dmxdrmi8rvng69hsgqj60gw22daasxmy69z1xygd0w7vcsvn9aw"; depends=[dplyr ggplot2 ggthemes magrittr qpdf RadData readr rlang scatterplot3d stringr utf8]; }; rafalib = derive2 { name="rafalib"; version="1.0.0"; sha256="1dmxjl66bfdgrybhwyaa8d4i460liqcdw8b29a6w7shgksh29m0k"; depends=[RColorBrewer]; }; - ragg = derive2 { name="ragg"; version="1.2.1"; sha256="08dknkibmmwllycga2cp2732idsi3jfkkl5ghh6r2g2wdli1n2y1"; depends=[systemfonts textshaping]; }; + ragg = derive2 { name="ragg"; version="1.2.2"; sha256="1q43pwmljsqgrikkh2g1n7bpz9c8py5dnj44cfg3y2br7b4m2q9v"; depends=[systemfonts textshaping]; }; rags2ridges = derive2 { name="rags2ridges"; version="2.2.5"; sha256="0aqfm8f58xrq81bd80parkwj28i6m0bxdpq6qp1iy3qyxsq5as64"; depends=[expm fdrtool ggplot2 graph gRbase Hmisc igraph RBGL Rcpp RcppArmadillo reshape RSpectra sfsmisc snowfall]; }; ragt2ridges = derive2 { name="ragt2ridges"; version="0.3.4"; sha256="17i3z0p3a4dqa0bch5l1r830w5nlxhdg71y82jipp6cfiwli588z"; depends=[abind Biobase CGHbase expm fdrtool igraph MASS Matrix mvtnorm rags2ridges Rcpp RcppArmadillo]; }; ragtop = derive2 { name="ragtop"; version="1.1.1"; sha256="0vgc2q71g8ysccq19kbk9a4swxgd5qj91xm4bshfgdg5chxqnb50"; depends=[futile_logger limSolve]; }; rai = derive2 { name="rai"; version="1.0.0"; sha256="0qimfzchbrarkwmv3mxxbdgvqzk16sc8m1h140zm0cnfgr2pvi5p"; depends=[dplyr ggplot2 readr rlang]; }; rainbow = derive2 { name="rainbow"; version="3.6"; sha256="11vfcck17d2xjc049ci5i8l1nqv345anmd110gdz7654i1pj9lb3"; depends=[cluster colorspace hdrcde ks MASS pcaPP]; }; raincin = derive2 { name="raincin"; version="1.0.3"; sha256="1wi430vsp5c0vm9p1srrs0nrbdb8x31qh7zph4v3fy7j0z226cwh"; depends=[lme4 popdemo]; }; - rainette = derive2 { name="rainette"; version="0.2.1"; sha256="1c1r0d8hddhcg98dg2d6y1wiyiryigwsiaz5xi24jxlwwm7ll2wm"; depends=[dendextend dplyr formatR ggplot2 ggwordcloud gridExtra highr miniUI progressr purrr quanteda quanteda_textstats Rcpp rlang RSpectra shiny stringr tidyr]; }; + rainette = derive2 { name="rainette"; version="0.3.0"; sha256="0hg402i7g8rvb7lv36x1ivx6xjixa9c1lram7swk89mgb55vjjla"; depends=[dendextend dplyr ggplot2 ggwordcloud gridExtra highr miniUI progressr purrr quanteda quanteda_textstats Rcpp rlang RSpectra shiny stringr tidyr]; }; rainfarmr = derive2 { name="rainfarmr"; version="0.1"; sha256="1gasnmyjnis6vv0krx6299ck2a6v9v1fgqajzqdpjaz2fsxn245i"; depends=[]; }; rakeR = derive2 { name="rakeR"; version="0.2.1"; sha256="0cd89q6k0y9z1qk9k06iw56lhj4c52ckr0g4qv6q95lkyrbi3qg8"; depends=[ipfp wrswoR]; }; ralger = derive2 { name="ralger"; version="2.2.4"; sha256="1j0np7h051dglva3dj9b64fagr99hvpsza1q2fnc7g3x1ki7mgni"; depends=[crayon curl dplyr robotstxt rvest stringi stringr tidyr xml2]; }; @@ -15088,7 +15140,7 @@ in with self; { random_polychor_pa = derive2 { name="random.polychor.pa"; version="1.1.4-4"; sha256="19yzpjidw5pbrqfa5ln5hgghv0mq3cwl92z2isq25yydfl6qsl6h"; depends=[boot MASS mvtnorm nFactors psych sfsmisc]; }; randomForest = derive2 { name="randomForest"; version="4.7-1"; sha256="04q6gb917md4yw837cf9vlx1q8ljl06jw7yhykzb6nl47w55jnkq"; depends=[]; }; randomForestExplainer = derive2 { name="randomForestExplainer"; version="0.10.1"; sha256="1ny8c3vn2zvdx12avwvlm4lp648jigkrkcvnhf5qmj8rh0w069v0"; depends=[data_table dplyr DT GGally ggplot2 ggrepel randomForest ranger reshape2 rmarkdown]; }; - randomForestSRC = derive2 { name="randomForestSRC"; version="3.0.0"; sha256="02izhp3m2avmnxvvdyqz0bsvjs6pmkh8jhq5rv0fra1nqzgf6nwp"; depends=[data_tree DiagrammeR]; }; + randomForestSRC = derive2 { name="randomForestSRC"; version="3.0.2"; sha256="0zfmz1m2kad3ph67zkhvmalaavvyyif5mk9qlc1q2b17246975na"; depends=[data_tree DiagrammeR]; }; randomLCA = derive2 { name="randomLCA"; version="1.1-1"; sha256="08flank5pmyh5ih63bfw5qaby3g8vfh8p36sjbmxfylicdydfjl7"; depends=[boot doParallel doRNG fastGHQuad foreach lattice Matrix Rfast]; }; randomNames = derive2 { name="randomNames"; version="1.5-0.0"; sha256="1lv1vqb4wgs0j1gqy84dpa30qsvbp6928zpshczpw87yf32k71vh"; depends=[crayon data_table toOrdinal]; }; randomUniformForest = derive2 { name="randomUniformForest"; version="1.1.5"; sha256="1amr3m7h5xcb8gahrr58233chsnx1naf9x5vpjy9p5ivh71xcxf7"; depends=[cluster doParallel foreach ggplot2 gtools iterators MASS pROC Rcpp]; }; @@ -15129,7 +15181,7 @@ in with self; { rarms = derive2 { name="rarms"; version="1.0.0"; sha256="11wjxd3pxvjv1j2nz26l8f0kykk9w6lf08izhivfngp63dk2akns"; depends=[jsonlite]; }; rasciidoc = derive2 { name="rasciidoc"; version="4.0.2"; sha256="1k3bh1bbjrzhmz2dz98qw8ad46jk7dx7srigp22valk5jz4ni7s5"; depends=[checkmate document fritools gert highr knitr reticulate]; }; rasclass = derive2 { name="rasclass"; version="0.2.2"; sha256="1lsmv8kh519mz3szb4k9s17fz1480cw0i4qk12givhhm2rpzjy50"; depends=[car e1071 nnet randomForest RSNNS]; }; - rassta = derive2 { name="rassta"; version="1.0.2"; sha256="1f8lkv6n701gy8lgzil9kha62w9pqvfzd8ns9900hvrw50kg6aiy"; depends=[cluster data_table dplyr DT foreach GGally ggplot2 histogram KernSmooth kohonen plotly raster rlang scales shiny stringdist stringi terra]; }; + rassta = derive2 { name="rassta"; version="1.0.3"; sha256="1shkl4k2hlddph2h0v936yrn6r1gi0dggr19d7v9rqcq5jd84sa1"; depends=[cluster data_table dplyr DT foreach GGally ggplot2 histogram KernSmooth kohonen plotly raster rlang scales shiny stringdist stringi terra]; }; raster = derive2 { name="raster"; version="3.5-15"; sha256="11fnznymwavpph733dayklhcx4phpjgrijfxlaszi122sg2x7ir9"; depends=[Rcpp sp terra]; }; rasterDT = derive2 { name="rasterDT"; version="0.3.1"; sha256="1dl083jm4x0shl7lq4in2alksgi63hp1p7j2cnsvkmwjaxygzm9v"; depends=[data_table fasterize raster sf]; }; rasterImage = derive2 { name="rasterImage"; version="0.4.0"; sha256="191m5k1rbbwziznmxbsq4g55afkw8gb5011i70f3wx3dscr3phxz"; depends=[plotrix]; }; @@ -15137,24 +15189,23 @@ in with self; { rasterList = derive2 { name="rasterList"; version="0.5.8"; sha256="0q7apglxzpah04463z07cpkzyd6l6dbbdhm601brzh6yk75z20vh"; depends=[raster]; }; rasterVis = derive2 { name="rasterVis"; version="0.51.2"; sha256="0kgg6cm7xjqya2d46w0i1i1wjpkb8f99lyqy7rgwa7l9xmwzj5n1"; depends=[hexbin lattice latticeExtra raster RColorBrewer sp terra viridisLite zoo]; }; rasterbc = derive2 { name="rasterbc"; version="1.0.1"; sha256="17knrhvy2qkdz5bvhnllfkv8w4cm5gjjninwh66pk1xfrqkd4skg"; depends=[sf terra]; }; - rasterdiv = derive2 { name="rasterdiv"; version="0.2-3"; sha256="1n0zrncda3nk4x8l9wb0acdx25dlki9wwrg874qwhd73cx0iy0rp"; depends=[foreach progress proxy raster svMisc]; }; + rasterdiv = derive2 { name="rasterdiv"; version="0.2-5"; sha256="1jprhbfih2w3wh9ywmnm42yhsyivqacycgzv9hckb2r49d87zlsv"; depends=[foreach progress proxy raster svMisc terra]; }; rasterize = derive2 { name="rasterize"; version="0.1"; sha256="18nrhmq1qmi05rkyr86xsyc8nz0fbdpf2d45h62bbfzbfynqd4qy"; depends=[png]; }; rasterly = derive2 { name="rasterly"; version="0.2.0"; sha256="1fv0ayh8r78qss7ikcwnj0i5x8iyz4c3icsfb554zji9bw30x7qr"; depends=[data_table ggplot2 magrittr plotly Rcpp rlang]; }; rasterpdf = derive2 { name="rasterpdf"; version="0.1.1"; sha256="0zi54nifbb4dzb29i8rskynblw3z42vzaykwbq30ia5zs9q1bvm5"; depends=[png]; }; - rasterpic = derive2 { name="rasterpic"; version="0.1.0"; sha256="0knrdca9s15sws2psqi4yc26b6nn5q2p65c5f9wf0n7211534rik"; depends=[png sf terra]; }; + rasterpic = derive2 { name="rasterpic"; version="0.2.0"; sha256="0vlas1b9la6sp3qkcg831lkfa2n9ms2gq7s0k2wk4lqxmrpq0q66"; depends=[png sf terra]; }; ratelimitr = derive2 { name="ratelimitr"; version="0.4.1"; sha256="06x759jxr5zcnvg9q120n5bpipkb16piw15kxrpk7i918mby889b"; depends=[assertthat]; }; ratematrix = derive2 { name="ratematrix"; version="1.2.3"; sha256="0bnwwkmjsxlv4qkkwq93d7nrqb7pyyd70ffpm98xsxfy1ygdxjqq"; depends=[ape coda corpcor ellipse geiger MASS mvMORPH phylolm Rcpp RcppArmadillo readr]; }; rater = derive2 { name="rater"; version="1.2.0"; sha256="1y4hhcnxdlw17w0ihv108p3rkwwdis7i7vc0rp7l6pfz7an8pw8r"; depends=[BH ggplot2 loo Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders]; }; rateratio_test = derive2 { name="rateratio.test"; version="1.0-2"; sha256="1a2v12z2dr893ha80fhada1820z5ih53w4pnsss9r9xw3hi0m6k5"; depends=[]; }; raters = derive2 { name="raters"; version="2.0.1"; sha256="16jnx6vv39k4niqkdlj4yhqx8qbrdi99bwzxjahsxr12ab5npbp1"; depends=[]; }; ratesci = derive2 { name="ratesci"; version="0.4-0"; sha256="1imraj95vcwz3i6r767zwckjqs1vp7bfww9d792l5nvwi5zyddp4"; depends=[]; }; - rationalfun = derive2 { name="rationalfun"; version="0.1-0"; sha256="15949vs9pdjz7426zhgqn7y87xzn79ikrpa2vyjnsid1igpyh0mp"; depends=[polynom]; }; + rationalfun = derive2 { name="rationalfun"; version="0.1-1"; sha256="0xabnqgzl8qdc4x9547mmkr1rm78p3fysdvk6jhjdi8cp2p6kcjh"; depends=[polynom]; }; ratios = derive2 { name="ratios"; version="1.2.0"; sha256="16q9v2lhgklvdp3hi9x3afdldznfpwg775p80m2g5074q2dzjpgg"; depends=[data_table stringr]; }; - rattle = derive2 { name="rattle"; version="5.4.0"; sha256="1cg26k491f78yqwis07djad8b3f9ndqwqylbh5sh66l2j9bdpmz5"; depends=[bitops dplyr ggplot2 magrittr rpart_plot stringi stringr tibble tidyr XML]; }; - rattle_data = derive2 { name="rattle.data"; version="1.0.2"; sha256="0cnmyzvy23jc4vz521c3jg0w4165waycvy5014l5773fy19zq75c"; depends=[]; }; raveio = derive2 { name="raveio"; version="0.0.5"; sha256="0c17f9cgh453d22lxa2ds5q6si27chk55cyzlmp1klipx4mfq3jp"; depends=[callr data_table dipsaus edfReader filearray fst glue hdf5r ini jsonlite R_matlab R6 remotes stringr targets threeBrain yaml]; }; ravelRy = derive2 { name="ravelRy"; version="0.1.0"; sha256="07mywv57rw2b309i2qisbpx1x3sb3z6n2b5gia9bdmb2m4hhpdai"; depends=[dplyr httr jsonlite purrr tibble tidyr]; }; raven_rdf = derive2 { name="raven.rdf"; version="0.2.0"; sha256="12jy3md6d1qwzkks5iljn4h0iv5lj3n39ll7r3fvrxjwh7afvw7r"; depends=[]; }; + ravetools = derive2 { name="ravetools"; version="0.0.3"; sha256="1jw58da0220889vf1pchgnyjwzh2m3zk5kh1ssdp9hx3v8w0jdcj"; depends=[digest filearray Rcpp signal waveslim]; }; raw = derive2 { name="raw"; version="0.1.8"; sha256="1y2vhpgigzkd2xyj3986wlzm1g3pp99w6fspmhlff5czd73g16is"; depends=[]; }; rawKS = derive2 { name="rawKS"; version="0.1.0"; sha256="1yiw9imhgij49qbm9hk6psb73zngqmxxwnaxq144ydwb7fbk6j0z"; depends=[dplyr ggplot2 magrittr ROCR tidyr]; }; raws_profile = derive2 { name="raws.profile"; version="0.1.0"; sha256="04f7wk7x9j3rb6nn3zqss9vw0h9a4vpcjyilc2vqy0fm2by41xkg"; depends=[stringr tibble withr]; }; @@ -15166,7 +15217,7 @@ in with self; { rbace = derive2 { name="rbace"; version="0.2.2"; sha256="04jcbrcp0l1v2q8hhwr5w72spdja8r0fw71v68kx39yigy7m1sgp"; depends=[crul data_table tibble xml2]; }; rbacon = derive2 { name="rbacon"; version="2.5.7"; sha256="14j84bkgmxigzj5nk909b89ails7mzys8wk92gvcywv2p9yhwk6b"; depends=[coda IntCal Rcpp]; }; rbart = derive2 { name="rbart"; version="1.0"; sha256="1byfm1ycw9nfhdblqklyn8pxn6b9q5fa3inbgfpynqpsid97ig35"; depends=[Rcpp]; }; - rbcb = derive2 { name="rbcb"; version="0.1.8"; sha256="07hnv19q10vgcq6qzzm4y4y0rfi8rzd41hvawl01lk3y8b9lz2v0"; depends=[httr jsonlite tibble xml2 xts]; }; + rbcb = derive2 { name="rbcb"; version="0.1.9"; sha256="1vhdbrci803365ik5y6mbpa9wjg7ixz6vbxw78v31irrnn814ish"; depends=[httr jsonlite tibble xml2 xts]; }; rbch = derive2 { name="rbch"; version="0.1-1"; sha256="0n2s5qfgjvg7vv65myz6dcmmaf37z883z1sw4hryngz2z6w4zz5q"; depends=[gmp httr openssl rjson]; }; rbefdata = derive2 { name="rbefdata"; version="0.3.5"; sha256="12mcqz0pqgwfw5fmma0gwddj4zk0hpwmrsb74dvzqvgcvpfjnv98"; depends=[RColorBrewer RCurl rjson rtematres wordcloud XML]; }; rbenchmark = derive2 { name="rbenchmark"; version="1.0.0"; sha256="010fn3qwnk2k411cbqyvra1d12c3bhhl3spzm8kxffmirj4p2al9"; depends=[]; }; @@ -15185,6 +15236,7 @@ in with self; { rbit = derive2 { name="rbit"; version="1.0.0"; sha256="09ywr711gv0vgfims2vfcxk3rnd0iadzlksil0q9159yarapfc59"; depends=[R6]; }; rbitcoinchartsapi = derive2 { name="rbitcoinchartsapi"; version="1.0.4"; sha256="0r272jvjh3rzch8dmn4s0a5n5k6dsir7pr4qswzfvafqjdiwjajz"; depends=[RCurl RJSONIO]; }; rblt = derive2 { name="rblt"; version="0.2.4.5"; sha256="1pfg8sgm532czz3lhpx7dmg5zik3bc0p4vdq9s0qk5zgq7nnm9sj"; depends=[data_table dygraphs hdf5r shiny xts]; }; + rbmi = derive2 { name="rbmi"; version="1.1.1"; sha256="09d40aqdzri0364k54zwd5ixh7n7bf16nfjb3jb8bcjcpzqsywsr"; depends=[assertthat BH glmmTMB Matrix R6 Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; rbmn = derive2 { name="rbmn"; version="0.9-4"; sha256="039scbjzigj9ks62l8yagfpr3bpslvxg1nqv22pyw8jay8i6993g"; depends=[MASS]; }; rbokeh = derive2 { name="rbokeh"; version="0.5.2"; sha256="1h2fpzqf17pw9d09r1g1iyxsj5qma4fsk8vnar7f1z4fjyypvi6q"; depends=[digest gistr hexbin htmlwidgets jsonlite lazyeval magrittr maps pryr scales]; }; rbooster = derive2 { name="rbooster"; version="1.1.0"; sha256="0v524hjp3im94hbf6kbmi4xhqnak135mmpmq1sni1c97dqal2hqy"; depends=[earth Hmisc rpart]; }; @@ -15194,17 +15246,16 @@ in with self; { rbtc = derive2 { name="rbtc"; version="0.1-6"; sha256="1z5p1jn5b0hzwcbdpiwj224h45x01bbsgkskllir5j13l416561p"; depends=[gmp httr openssl rjson]; }; rbtt = derive2 { name="rbtt"; version="0.1.0"; sha256="1gbsb0vmqxcl28c5nn0rz95bxrvl7i0b17lq90cj5ahbk6x9jblz"; depends=[data_table]; }; rbundler = derive2 { name="rbundler"; version="0.3.7"; sha256="0wmahn59h9vqm6bq1gwnf6mvfkyhqh6xvdc5hraszn1419asy26f"; depends=[devtools]; }; - rbw = derive2 { name="rbw"; version="0.3.0"; sha256="0mxkwxb54n8vmx0z574mc39v53hlcq91nfmyqcdmxlp2jaz20184"; depends=[dplyr rlang]; }; + rbw = derive2 { name="rbw"; version="0.3.2"; sha256="12kldcx858gigd9sfki73rgg61smk7qcb43lx7z2r5y9dr0mwaa7"; depends=[dplyr rlang]; }; rcDEA = derive2 { name="rcDEA"; version="1.0"; sha256="012l9l61p3mw38fk3y3rcfjjjj9ds5kb1v2cwfvad2il5w6s9smv"; depends=[Benchmarking np]; }; rcage = derive2 { name="rcage"; version="1.1"; sha256="0k6x543c0v31yx6b7xiyq7pb3a68sxc7ap8l61h3lp840la6gidp"; depends=[ClustGeo ff fields ggplot2 gridExtra LaplacesDemon MASS Matrix pracma raster rgeos rlang sf sp]; }; rcaiman = derive2 { name="rcaiman"; version="0.1.1"; sha256="0p6qn23mj90fj81j5gc7s8v1kihfqnv3r03xh9d8rax4jd2dni92"; depends=[colorspace magrittr pracma raster Rdpack rgdal sp spatial testthat]; }; rcane = derive2 { name="rcane"; version="1.0"; sha256="0p2mgkq6fh0n289n2h19c52lnqxl05wvpmd6nwvgnjqwa4wwpa7r"; depends=[]; }; rcanvec = derive2 { name="rcanvec"; version="0.2.1"; sha256="0gsk2cfiysxjw2lrnpl2l524lvhh9nhnyyh79n8p7vykyqj711yn"; depends=[rgdal sp]; }; - rcarbon = derive2 { name="rcarbon"; version="1.4.2"; sha256="04s1gqrfa5hy93jnqj5sqii49gz7mq7nm23jnd0iwl48f847vka1"; depends=[doSNOW foreach iterators knitr snow sp spatstat spatstat_core spatstat_geom spatstat_linnet]; }; + rcarbon = derive2 { name="rcarbon"; version="1.4.3"; sha256="18yxliq6bxrrkd6xhlrxbbh017lclsfkvmgq662zy58a6wfjmqxh"; depends=[doSNOW foreach iterators knitr snow sp spatstat spatstat_core spatstat_geom spatstat_linnet]; }; rcartocolor = derive2 { name="rcartocolor"; version="2.0.0"; sha256="08ljaag2mnhz2671zvwji1sp003z94lz30vjidmybm9fp8piqw5g"; depends=[ggplot2 scales]; }; - rcbalance = derive2 { name="rcbalance"; version="1.8.5"; sha256="15qlk3cqwsvixl17l1fxcajrabmz4y7q5gz0a1pd66f6i1xskcqq"; depends=[MASS plyr]; }; + rcbalance = derive2 { name="rcbalance"; version="1.8.6"; sha256="140zibpamk9x2xj3ni9p9kgbhxv7rpszlfrvp72854604502zbia"; depends=[MASS plyr]; }; rcbayes = derive2 { name="rcbayes"; version="0.2.0"; sha256="1qwbpx9snqgaz7gshvyhq9ylsf59grjhx56f7cnq25h2f76km9cc"; depends=[BH dplyr magrittr Rcpp RcppEigen RcppParallel Rdpack rlang rstan rstantools shiny shinythemes StanHeaders tibble tidybayes]; }; - rcbsubset = derive2 { name="rcbsubset"; version="1.1.5"; sha256="0qfx8qzsrlgbgpymc67ywy9k8dgfjz5x54xwabf2bjjwrzv2mcl5"; depends=[MASS plyr rcbalance]; }; rcc = derive2 { name="rcc"; version="1.0.0"; sha256="0a77d54c9qahhsjzpa0436ddsj4j44013r7rbxm0fjz04c0d2921"; depends=[]; }; rccdates = derive2 { name="rccdates"; version="1.0.0"; sha256="1f87qlw62am2qy1zzrz91vmsn8axhld44gak61xa7046675hm98s"; depends=[rccmisc]; }; rccmisc = derive2 { name="rccmisc"; version="0.3.7"; sha256="171s2ll759xjdnx0z24ih5ix2vcp4qnmf1nf107gij6wv8k450ab"; depends=[dplyr]; }; @@ -15221,10 +15272,10 @@ in with self; { rclipboard = derive2 { name="rclipboard"; version="0.1.5"; sha256="0c4h7bzv91issha1ss5mp0iq0aj3aw4y84kw56s3jkxwy9vgvmfn"; depends=[shiny]; }; rcmdcheck = derive2 { name="rcmdcheck"; version="1.4.0"; sha256="1l696byn3kjq2xvz4wxybzaj6ink85h4lz3a35v2132ba5yyzm5v"; depends=[callr cli curl desc digest pkgbuild prettyunits R6 rprojroot sessioninfo withr xopen]; }; rco = derive2 { name="rco"; version="1.0.2"; sha256="1ch7ak802ri4jr10jqvhvdi6q9fhyhql15ja395xfv6j81d5cmia"; depends=[]; }; - rcol = derive2 { name="rcol"; version="0.2.0"; sha256="1ypn5fiwhyvfnmjs2davqqhxf5pjg7f0101v40bqrv4jz563h5n1"; depends=[crul data_table glue jsonlite tibble]; }; rcolors = derive2 { name="rcolors"; version="0.1.0"; sha256="19lkwd1wdwq9if957qjgrz9mq6s8x49dig8snivhw9ksffcfy4xp"; depends=[magrittr]; }; rcompanion = derive2 { name="rcompanion"; version="2.4.13"; sha256="0y5d4z903fj7z326y9alnnlr0hcmxspccv2swra8a4j927csr764"; depends=[boot coin DescTools lmtest multcompView nortest plyr]; }; rcompendium = derive2 { name="rcompendium"; version="0.5.1"; sha256="0zg7051c4wg1jbdf7hshswy53y24x8h8myhshvg9z2pg8mvd8sir"; depends=[clisymbols crayon devtools gert gh gtools rmarkdown rstudioapi stringr usethis xfun]; }; + rconfig = derive2 { name="rconfig"; version="0.1.1"; sha256="0jcwfhbqh4sb8y5wd8l05xz0y7nn28dhfkb2r40jbp6ycrvw8mpp"; depends=[jsonlite yaml]; }; rcoreoa = derive2 { name="rcoreoa"; version="0.4.0"; sha256="0q5dprz0ag04w265bk7isd2lr61nahf223qza47m0izd9nyi9h8a"; depends=[crul hoardr jsonlite pdftools]; }; rcorpora = derive2 { name="rcorpora"; version="2.0.0"; sha256="1b8xa81mn3afadz77576vda9b0d99f1k096drxrpqd989g993aqy"; depends=[jsonlite]; }; rcosmo = derive2 { name="rcosmo"; version="1.1.3"; sha256="08zw2xnchima9gzjn3nchj8q1phf3cchq9340fffsac77l4am3mb"; depends=[cli entropy FITSio geoR mmap nnls Rcpp rgl tibble]; }; @@ -15235,15 +15286,15 @@ in with self; { rcube = derive2 { name="rcube"; version="0.5"; sha256="1162y7fs3fsbb5jj66g9kvxxhggprlifrabqbb9lqm8rrdwhz3r9"; depends=[magrittr]; }; rdacca_hp = derive2 { name="rdacca.hp"; version="1.0-7"; sha256="0ww67wa3rjy0p2dgqr4h69sy9jb7ipmrmycx902491jya0gwsw2a"; depends=[ggplot2 vegan]; }; rdatacite = derive2 { name="rdatacite"; version="0.5.2"; sha256="07zbxr89fxx9nlp5w7n60rjm3prck08h0fjrq0pnpkbnnkx9cv9a"; depends=[crul jsonlite tibble]; }; - rdataretriever = derive2 { name="rdataretriever"; version="3.0.0"; sha256="1a01lrzn7gcxid01r0l8nnbpbryvs07z9nf43l1143w2n9bvgn24"; depends=[reticulate semver]; }; rdbnomics = derive2 { name="rdbnomics"; version="0.6.4"; sha256="1h32wxjykz9y3k48rx31cvy485gsx8ix3194r2zgxlwdza3rl3lb"; depends=[curl data_table jsonlite]; }; rdd = derive2 { name="rdd"; version="0.57"; sha256="1lpkzcjd18x51wzr4d1prdjfsw5978z6zap65psfs02nszy69nqp"; depends=[AER Formula lmtest sandwich]; }; + rddapp = derive2 { name="rddapp"; version="1.3.0"; sha256="1yh5yx0jfvxs566kh4dmx4k9h6gh7n4rvvv8aw4mr52ihisradqm"; depends=[AER DT Formula lmtest plot3D R_utils sandwich shiny sp]; }; rddensity = derive2 { name="rddensity"; version="2.2"; sha256="00xmdy3885j3j5sh3civlgggscr946gh7ibd6namqhbzhsnpwrd3"; depends=[ggplot2 lpdensity]; }; rddtools = derive2 { name="rddtools"; version="1.6.0"; sha256="12lxdpazfhwn5kkzs91qhs0xcky30dj01yp0v5708ahr1ywqdxmd"; depends=[AER Formula ggplot2 KernSmooth lmtest locpol np rdd rdrobust rmarkdown sandwich]; }; rde = derive2 { name="rde"; version="0.1.0"; sha256="1zw9gdh90hl0wc5c0xwl5x7566r611wk73sbqdmpzpswjyyl9aqm"; depends=[clipr]; }; rdecision = derive2 { name="rdecision"; version="1.1.0"; sha256="1rj9sw6r6rimzxbyjjczi5znmdkvqb7kkrdsnzz35n8g43s7h2wr"; depends=[R6 rlang]; }; rdetools = derive2 { name="rdetools"; version="1.0"; sha256="0pkl990viv7ifr7ihgdcsww93sk2wlzp2cg931wywagfp8dijd02"; depends=[]; }; - rdflib = derive2 { name="rdflib"; version="0.2.4"; sha256="1i08l8s6077xgfm4hkxfs5zq7rkblhbkdiimh4gcynbscs4is0nc"; depends=[dplyr jsonld readr redland stringi tidyr]; }; + rdflib = derive2 { name="rdflib"; version="0.2.5"; sha256="0qbqn72c26pi3mc53z0sip5zpmkdpwggysj5vrn4zgccs7932r79"; depends=[dplyr jsonld readr redland stringi tidyr]; }; rdfp = derive2 { name="rdfp"; version="0.1.4"; sha256="1490227hhfjjscfmd8p897v1ijs61pk5sc0a2vr9yjnfmsnxpqrl"; depends=[curl data_table dplyr httr lubridate plyr purrr readr XML xml2]; }; rdhs = derive2 { name="rdhs"; version="0.7.3"; sha256="156jsil81ha61az78w1fi8fzrwhlircidha5x6c29zl0l6m4jzv9"; depends=[brio digest foreign getPass haven httr iotools jsonlite magrittr qdapRegex R6 rappdirs rgdal storr xml2]; }; rdi = derive2 { name="rdi"; version="1.0.0"; sha256="1c49mkxfyxhqz8fc155kgy1k5by0y2c1ahy8k6pn9k8l1j4m4m2q"; depends=[beanplot gplots pdist stringr]; }; @@ -15314,7 +15365,7 @@ in with self; { recapr = derive2 { name="recapr"; version="0.4.4"; sha256="1grp8aczn3qjm8ihn2466v5yay60vwyf1x7jsmihgxlvgwki6dh7"; depends=[MASS]; }; recexcavAAR = derive2 { name="recexcavAAR"; version="0.3.0"; sha256="0b91jbgqzkgzvk658ckk639yyz1daa0xql3qgl0kzgqg68d53x20"; depends=[kriging Rcpp]; }; rechonest = derive2 { name="rechonest"; version="1.2"; sha256="0vpff8q5p6in7vjyl62bx3wmksravcg4mpx20qlgy5ia47vyhqp2"; depends=[httr jsonlite RCurl]; }; - recipes = derive2 { name="recipes"; version="0.1.17"; sha256="0gbdc5kvbn14s5zrf4vrdjvkfajs00p7vvb433ii0lqnl07bl87d"; depends=[dplyr ellipsis generics glue gower ipred lifecycle lubridate magrittr Matrix purrr rlang tibble tidyr tidyselect timeDate vctrs withr]; }; + recipes = derive2 { name="recipes"; version="0.2.0"; sha256="1950rvva19ms6xy9d3jx94gzy589qprk115zjjd0ib4qxgip601x"; depends=[dplyr ellipsis generics glue gower hardhat ipred lifecycle lubridate magrittr Matrix purrr rlang tibble tidyr tidyselect timeDate vctrs withr]; }; reclin = derive2 { name="reclin"; version="0.1.2"; sha256="0bskmlysc12g5invscr0vvshy8bp1gxjx4wihwbbfzmnk2951qrc"; depends=[dplyr ldat lpSolve lvec Rcpp stringdist]; }; reclin2 = derive2 { name="reclin2"; version="0.1.1"; sha256="12pb8gp9c5vhfikl4v348dmz0xig10gbrnwxmgmn3jv75ys9ppzq"; depends=[data_table lpSolve Rcpp stringdist]; }; recluster = derive2 { name="recluster"; version="2.9"; sha256="1nz5w4v5hhb3qjwxixc526gqsmr1imw582l9gj2acwar4z9mixjp"; depends=[ape cluster phangorn phytools picante plotrix vegan]; }; @@ -15330,7 +15381,7 @@ in with self; { recommenderlabBX = derive2 { name="recommenderlabBX"; version="0.1-1"; sha256="042yh0h8qxj7n9hysrfdxnpb3g0zb6s5b683s7hn5mjc55q7nn4g"; depends=[recommenderlab]; }; recommenderlabJester = derive2 { name="recommenderlabJester"; version="0.1-2"; sha256="0kr9xc2gih2myn1a8h8dxxmdhibv1sjwjsvlrj9d5hvd1mgfhks5"; depends=[recommenderlab]; }; reconstructKM = derive2 { name="reconstructKM"; version="0.3.0"; sha256="0fxdmvkm68g114nx2r2r8gy2lwqc5wkfcls7fpdfdfg0aazqqxwq"; depends=[dplyr magrittr rlang survival survminer]; }; - reconstructr = derive2 { name="reconstructr"; version="2.0.2"; sha256="0pzpd2l1b6y1b1lnd95lpc5s8niz7p56vkmxgyi6g6b25vh9c2vi"; depends=[openssl Rcpp]; }; + reconstructr = derive2 { name="reconstructr"; version="2.0.4"; sha256="05nvp19fkmyr2sc7k5qjz2521f8nrzxvjdbnqa148qs0mac84b16"; depends=[openssl Rcpp]; }; recorder = derive2 { name="recorder"; version="0.8.2"; sha256="1j3fqqp5vi8z3hxqgb887v9r8x0cl5jikiyx3c7arwna7k89215a"; depends=[crayon data_table]; }; recosystem = derive2 { name="recosystem"; version="0.5"; sha256="0xpkq500cbq6vzgwq5scq8bj33nrjj94n39zza2cm1fnars6msjq"; depends=[float Rcpp RcppProgress]; }; recurse = derive2 { name="recurse"; version="1.1.2"; sha256="0bdm2nd8cq64dwz9b2hnbjv6c3fwpy7gnmbfi6p49nf285p8y632"; depends=[Rcpp]; }; @@ -15340,7 +15391,7 @@ in with self; { redcapAPI = derive2 { name="redcapAPI"; version="2.3"; sha256="1myycwdrlw1405fxc82zd8ps8bhdvf2ffsb91pia5ijf6952v8pf"; depends=[checkmate chron DBI httr labelVector lubridate readr stringr tidyr]; }; reddPrec = derive2 { name="reddPrec"; version="0.4.0"; sha256="0zmkaiivvjq8mcaz310zgjjc7y0wgsqv29bf8nhli5qawaczvb9a"; depends=[fields snowfall]; }; redist = derive2 { name="redist"; version="3.1.5"; sha256="18g78x6riqqczhi5rixr7fikfzhrf46b62y4ii18r99q9z65k4z4"; depends=[coda doParallel dplyr foreach ggplot2 patchwork Rcpp RcppArmadillo readr rlang servr sf stringr sys tidyselect vctrs]; }; - redistmetrics = derive2 { name="redistmetrics"; version="1.0.0"; sha256="02d2mkgrkb81rgyqzj8yphgq4mbh4m2gah0j58mvqq1mrlhryg7j"; depends=[cli doParallel dplyr foreach geos magrittr Rcpp RcppArmadillo rlang sf]; }; + redistmetrics = derive2 { name="redistmetrics"; version="1.0.1"; sha256="01s3aim2rmsbs74mc3banqv4m1mdb82qa38wg96pydw7qr7by63w"; depends=[cli doParallel dplyr foreach geos magrittr Rcpp RcppArmadillo rlang sf wk]; }; redland = derive2 { name="redland"; version="1.0.17-16"; sha256="1nzxyczsz274751z48glh8qzv1v9rdv3raq6whyp63nsi2xdri90"; depends=[roxygen2]; }; redlistr = derive2 { name="redlistr"; version="1.0.3"; sha256="003jxfmj1gryw77vnrvaxmpvjbshlq53wgcrj02mcywfcqzg4jcr"; depends=[plyr raster rgeos sp]; }; redoc = derive2 { name="redoc"; version="2.0.0.49"; sha256="06nfqw6xs0ij21mjbqk9sdvhhh0pqf6fwankvagsbyrv742g7qkx"; depends=[jsonlite]; }; @@ -15353,6 +15404,7 @@ in with self; { refitME = derive2 { name="refitME"; version="1.2.2"; sha256="125hxp24vlwg3g0v1rlhi3zbvnnzyj95a6d9f52f98hf6bp05yhb"; depends=[caret dplyr expm MASS mgcv mvtnorm sandwich scales SemiPar VGAM VGAMdata]; }; refnr = derive2 { name="refnr"; version="0.1.0"; sha256="1gjjzxpyxm1kf1pqk99bd7f2j85rzmww3r1268bccivf19rs881i"; depends=[]; }; refreg = derive2 { name="refreg"; version="0.1.0"; sha256="0fgf99a9xki9x0kjrhi7lyr1f4gpfl52xis058fd70y4pj1zz37l"; depends=[doParallel foreach ggplot2 gridExtra KernSmooth ks matrixcalc mbend mgcv misc3d pracma RColorBrewer rgl sp stringr]; }; + refreshr = derive2 { name="refreshr"; version="0.1.0"; sha256="0p240a7f2yajrd5qqjv0la49vm2cs6i32zyxxjcs6rd2a1z9xwfs"; depends=[crayon dplyr lubridate stringr]; }; refset = derive2 { name="refset"; version="0.1.1"; sha256="1xbwvm9066g3f7pd34z5jh04vph4ddy2lkcgmf4kiwa1k5czpwg1"; depends=[]; }; refuge = derive2 { name="refuge"; version="0.3.3"; sha256="0cq62rgawlam4j4h4sz4zvkgi0x21k4syy4vh7i40bxrq0z9ysyz"; depends=[dplyr httr jsonlite tibble]; }; refund = derive2 { name="refund"; version="0.1-24"; sha256="089dl0vjn474gka9j18fk125aqvwd2gx61g1rv8cp6m0caq99pzg"; depends=[boot fda gamm4 ggplot2 grpreg lattice lme4 magic MASS Matrix mgcv nlme pbs RLRsim]; }; @@ -15363,7 +15415,9 @@ in with self; { regexPipes = derive2 { name="regexPipes"; version="0.0.1"; sha256="1hk0rhvmgzcyf5cyl8hjznl3ll25kpasqikfr6nxd6ian2slvmmb"; depends=[]; }; regexSelect = derive2 { name="regexSelect"; version="1.0.0"; sha256="0xnb9qa8l63ang4r40ky4qhlrs5mbzvmj98dgij26j3mq1ys1pa7"; depends=[shiny shinyjs]; }; regexTestR = derive2 { name="regexTestR"; version="0.1.3"; sha256="0nnp2xlrrywpi1lmj8ymsjgiqvq8777hhdgcwjq549m7whfw6lsg"; depends=[config data_table DT golem htmltools pkgload processx purrr RColorBrewer rvest shiny shinyBS shinythemes stringr tidyr xml2]; }; + regfilter = derive2 { name="regfilter"; version="1.0.1"; sha256="19dp0219a789qjxc0flg14bwp297g3kcy5p65m9qsw72658pxw3z"; depends=[e1071 FNN gbm modelr nnet randomForest rpart]; }; reghelper = derive2 { name="reghelper"; version="1.1.0"; sha256="16mj3v9rn9krx4a8xnb2l01wnk17hgn0pkmkvqh4baby9a479hv7"; depends=[ggplot2 lme4 MASS nlme]; }; + regional = derive2 { name="regional"; version="0.3.0"; sha256="1x97jjpn08q0w3xw1r6k8dvildcl16zzwxwrwmbdhavqmcvf0lp8"; depends=[philentropy terra]; }; regioncode = derive2 { name="regioncode"; version="0.1.1"; sha256="1h5qbpcfgl86g0cy5nz9vvwzqsp335lqhl4djil3k3mab38k778d"; depends=[dplyr knitr pinyin textshaping]; }; regions = derive2 { name="regions"; version="0.1.8"; sha256="16i0w1my9zfwh0p9qvc3vcid0r6rb6gbvvrx03vbg81l6cxrglr4"; depends=[assertthat countrycode dplyr glue here magrittr purrr readxl rlang stringr tibble tidyr tidyselect]; }; registr = derive2 { name="registr"; version="1.0.0"; sha256="1ysj2ab69w6g71d1kpcwyq0py71w6h7lfhk4nzgn2dhh6k8whwbn"; depends=[dplyr ggplot2 gridExtra magrittr Rcpp RcppArmadillo tidyr]; }; @@ -15384,7 +15438,7 @@ in with self; { regsubseq = derive2 { name="regsubseq"; version="0.12"; sha256="0879r4r8kpr8jd6a3fa9cifm7cv0sqzz8z1alkm1b2fr1625md3g"; depends=[]; }; regtomean = derive2 { name="regtomean"; version="1.0"; sha256="1w5i75iwwc2w2nzw9yap86njhq9jz0pc9cn39ivxdam4a9693jjz"; depends=[effsize formattable mefa plotrix plyr sjlabelled sjmisc sjPlot]; }; regtools = derive2 { name="regtools"; version="1.1.0"; sha256="1kia4h4bwjjfq7jm57ihdgspbqfn683ssbzngp5r069ki931h3nb"; depends=[dummies FNN mvtnorm sandwich]; }; - regweight = derive2 { name="regweight"; version="1.0.1"; sha256="1crw4yw2hxla9xw1zj1dxxj2v1r77vijm9pf8mn9vpdz45mw8pkr"; depends=[checkmate dplyr ggplot2 glue gt lpdensity rlang scales tidyr tidyselect]; }; + regweight = derive2 { name="regweight"; version="1.0.2"; sha256="1ziqii9xlp86n6ga99glwnh2kf6pkm8m326yra40yf2w3h180pbm"; depends=[checkmate dplyr ggplot2 glue gt lpdensity rlang scales tidyr tidyselect]; }; rehh = derive2 { name="rehh"; version="3.2.2"; sha256="1kgabmg0vq8psdhkfcpdv3iy8gj5hmqzhb8bs8rld49nhnnbqs2x"; depends=[rehh_data]; }; rehh_data = derive2 { name="rehh.data"; version="1.0.0"; sha256="1jkvwmnnmfa7iyvrabgcfzw3vfzx0dlgq47s6yf4zayi437v4di0"; depends=[]; }; rehydratoR = derive2 { name="rehydratoR"; version="0.5.2"; sha256="1d94m9hv1l72l9lph2vzbq4qqbfcgyhv2qk82p9vb8l2ckavjzvv"; depends=[dplyr jsonlite rtweet tibble]; }; @@ -15392,10 +15446,9 @@ in with self; { reinsureR = derive2 { name="reinsureR"; version="0.1.0"; sha256="19ayikzcq6z4i7xrlby76yy2nwvrsv6xdfrmvzyr7rz934flh8kd"; depends=[data_table dplyr ggplot2 viridis viridisLite]; }; relMix = derive2 { name="relMix"; version="1.3.3"; sha256="03zzmsx2i7ib1mhdfk5igvr1winl9g2dfjqz2kzvcx3rl7l6hjym"; depends=[Familias gWidgets2 gWidgets2tcltk]; }; relSim = derive2 { name="relSim"; version="0.3-1"; sha256="1d6yihapfyjlfw87l370wyfyby7ivvykx04qljffdv3hi801gn7f"; depends=[multicool Rcpp rvest stringr xml2 xtable]; }; - rela = derive2 { name="rela"; version="4.1"; sha256="00ksm7zh1mpd2d5c5d823id3sxj0h3x0ccg6a40fadibvr1ay3ny"; depends=[]; }; relaimpo = derive2 { name="relaimpo"; version="2.2-6"; sha256="1v2zvakzrnc89dshhpkrikfwa7l786sk5vnz4khil5f53biahm4r"; depends=[boot corpcor MASS mitools survey]; }; relatable = derive2 { name="relatable"; version="1.0.0"; sha256="0147gin6dn76gg7gassar64f0w2gny1sh0k60v7914qhb4sj4s7i"; depends=[compare]; }; - relations = derive2 { name="relations"; version="0.6-10"; sha256="13h6snbbczwk4zcpsmbbrxvhy6dwv1pm2zwfh0cz2sr7djhb0q5n"; depends=[cluster sets slam]; }; + relations = derive2 { name="relations"; version="0.6-11"; sha256="1nsl042djnd7l61ckv3pwndqwxjcwvnvpni6d52dxc982gm8sims"; depends=[cluster sets slam]; }; relaxo = derive2 { name="relaxo"; version="0.1-2"; sha256="1rzmq7q3j271s6qwwrmwidv0vxcjpgjhyiqgr6fkczkai2lbnd8x"; depends=[lars]; }; reldist = derive2 { name="reldist"; version="1.7-0"; sha256="0i04d6w3r6fzm4bykz6lnnh6dngmd61v5wlpli70r3fzdzhi7fji"; depends=[densEstBayes Hmisc mgcv]; }; relen = derive2 { name="relen"; version="1.0.1"; sha256="0br7c3j30a1yc61pyinmk5lvk8zw9rivd0z2096g6crgmbzix8ml"; depends=[]; }; @@ -15406,7 +15459,7 @@ in with self; { reliabilitydiag = derive2 { name="reliabilitydiag"; version="0.2.0"; sha256="0qgvyjc512gwr0rbgxkkf9ipvxfl9y07215f1pdk15xhzkk94m53"; depends=[bde dplyr ggExtra ggplot2 magrittr purrr rlang tibble tidyr vctrs]; }; relimp = derive2 { name="relimp"; version="1.0-5"; sha256="0ydn82g8xdqzhf34187080bbpcpw1zdjbj2i3dv1d6d35vvprb5c"; depends=[]; }; relliptical = derive2 { name="relliptical"; version="1.1.0"; sha256="0qarn0gyr1zkr1y9hdy0xmlrx12cp9sfn1fglgprfbymbjr36ncc"; depends=[FuzzyNumbers_Ext_2 matrixcalc Rcpp RcppArmadillo Rdpack Ryacas0]; }; - relsurv = derive2 { name="relsurv"; version="2.2-6"; sha256="11g07282k1h7r342ayi1xwk85z5h7j800fqr4zrwm8m00nlwcdch"; depends=[date ggplot2 pammtools scales survival]; }; + relsurv = derive2 { name="relsurv"; version="2.2-7"; sha256="05w3j75fvli296bkza1s4jjxsjhiwzrv71dqrf8v7f9y1az4pj42"; depends=[date ggplot2 pammtools scales survival]; }; rem = derive2 { name="rem"; version="1.3.1"; sha256="1q4p26irhhl1lvc0ydv9wmng1y635zm16szpl7gwq1kyn2p90rai"; depends=[doParallel foreach Rcpp]; }; rema = derive2 { name="rema"; version="0.0.1"; sha256="15b68pynac9ff9bina0mf94absvfsn21xcdmvd4lbl97pxwj83ph"; depends=[progress Rcpp Rdpack]; }; remap = derive2 { name="remap"; version="0.2.1"; sha256="0fvi0scrjcghkfamdilfyqqn0v9zlgpjdkqwk4ylhpb85x5pv534"; depends=[sf units]; }; @@ -15420,23 +15473,24 @@ in with self; { remss = derive2 { name="remss"; version="1.0.1"; sha256="15s3qvcfyp1880ddzpvgiw3q5av21052iy1vnpw0hib5pb7xfkfb"; depends=[survival]; }; renpow = derive2 { name="renpow"; version="0.1-1"; sha256="0kbfpzr17fvf5zzxpzdhvfmrqmlkba2w3rzxl5q5ac1w3h75gfhc"; depends=[]; }; rentrez = derive2 { name="rentrez"; version="1.2.3"; sha256="0x1g2f6hvkqqlb39z8m5qxhcvsizddic5i7rpqw0wy77xfbna9gv"; depends=[httr jsonlite XML]; }; - renv = derive2 { name="renv"; version="0.15.2"; sha256="1nv5hz40cbvdbc2kkr2q2xqnpkgkmp47nlfbr7z57mpn579zyznh"; depends=[]; }; + renv = derive2 { name="renv"; version="0.15.4"; sha256="0byfs4cydhyqzdrxjv7sa6i30xc7qhnx0qw9d8wwwlzdkv235flf"; depends=[]; }; renz = derive2 { name="renz"; version="0.1.1"; sha256="0xanqqyz8cq8vfxy7vfxcf6fyh8r28bqpc7820fbl77g960cx5jw"; depends=[VGAM]; }; repairData = derive2 { name="repairData"; version="0.1.0"; sha256="1l5ag952165b0nm59mp9v768dp53xm51ckg01i4c6l04qfzx1lm7"; depends=[]; }; repana = derive2 { name="repana"; version="1.23.2"; sha256="1wic76sln37qjdrviaz689c5gjf4pc3ffdgvzcvjh0kjvl7d8jfh"; depends=[config DBI dplyr lubridate magrittr openxlsx pool processx readr rmarkdown rstudioapi]; }; - repeated = derive2 { name="repeated"; version="1.1.4"; sha256="0mz0nrrqcfr560qykzq452i406f07jlx543jaagh5ap8m18s2nwa"; depends=[rmutil]; }; + repeated = derive2 { name="repeated"; version="1.1.5"; sha256="1ng2w0zypaa48qrfpdx1mb085yvw9zgk81q96ki2y3rls4g6q84g"; depends=[rmutil]; }; repec = derive2 { name="repec"; version="0.1.0"; sha256="0alr9fbmfxmnnnn1qymy65crcycynwz435jj0vangbb4p0qhv8pm"; depends=[jsonlite]; }; repello = derive2 { name="repello"; version="1.0.1"; sha256="118m0vybgf5ys856zivn7gvjxqq163gkrhrpyl1avylib4bp3mcq"; depends=[dplyr httr stringr]; }; repfdr = derive2 { name="repfdr"; version="1.2.3"; sha256="0jpk44arg1jib0h2w90h851bs5cd1ss32fab9bfvf9iir2jk8985"; depends=[Rcpp]; }; replacer = derive2 { name="replacer"; version="1.0.1"; sha256="1y5f61r0rc4snpv8sjh4g5gc0f7rik5wdnh92sakafwiisjssmc1"; depends=[data_table]; }; - replicateBE = derive2 { name="replicateBE"; version="1.1.0"; sha256="0ix6qmgyh4j9klhmb7dqj5zwb42y2grlqxijv72lmkbyl59yqqqw"; depends=[lmerTest nlme pbkrtest PowerTOST readxl]; }; + replicateBE = derive2 { name="replicateBE"; version="1.1.1"; sha256="11xhn75n8hfw8ab5gkg9bi6vg66220hsdywjbskycdly4c5444jk"; depends=[lmerTest nlme pbkrtest PowerTOST readxl]; }; replicatedpp2w = derive2 { name="replicatedpp2w"; version="0.1-3"; sha256="1h680xn403fm98ywyxqwhq7llsaghgd4ffjq7r5bdb1r9ahvxrv0"; depends=[spatstat spatstat_core spatstat_geom spatstat_utils]; }; replicationInterval = derive2 { name="replicationInterval"; version="2.0.1"; sha256="1jyvyqr8r2fs1cmbz7zjcc8p116bnkslvx27pqi92y5pxgqvsqvr"; depends=[ggplot2 MASS MBESS pbapply]; }; repmis = derive2 { name="repmis"; version="0.5"; sha256="0z5mjbsl24yjbl0aawr35grcal44rf2xbwv1hy7bdkms94ix79b5"; depends=[data_table digest httr plyr R_cache]; }; repmod = derive2 { name="repmod"; version="0.1.7"; sha256="1rpmvxfw2m3bisi5g90sdfm8wmwg2gv9rzblq9kl70kvrs8pj1qs"; depends=[boot flextable lme4 lmerTest officer xtable]; }; repo = derive2 { name="repo"; version="2.1.5"; sha256="13gdka37kbs4mp16pf65bh28f0dkyalrcrdik6lc67jw8r9h94f9"; depends=[digest]; }; + repoRter_nih = derive2 { name="repoRter.nih"; version="0.1.0"; sha256="0kdjg0hmhw4h5gwmzxr44xrr1lkij3p75729mwbqxqfdgn784ajx"; depends=[assertthat crayon dplyr httr janitor jsonlite lubridate magrittr purrr tibble]; }; repolr = derive2 { name="repolr"; version="3.4"; sha256="13kmy09c7lk8p1mkdss0krcsfb6d7zcnqpwnl38zkanvh8q3fqhm"; depends=[Matrix Rcpp RcppArmadillo]; }; - report = derive2 { name="report"; version="0.5.0"; sha256="1wnyr15p2wycjlp37aqdnrwl8slcxqmj1wv859i8qaja00cdz39j"; depends=[bayestestR datawizard effectsize insight parameters performance]; }; + report = derive2 { name="report"; version="0.5.1"; sha256="1x293zjg4zfkcrgl6dsa6jn0igpxr12ic7jlb4ps79221ygga873"; depends=[bayestestR datawizard effectsize insight parameters performance]; }; reportROC = derive2 { name="reportROC"; version="3.5"; sha256="1f3vdxz45bhks1pm3b41pmh8g8vr2czfr1pn4ddy4kgw5h1x3n8n"; depends=[pROC]; }; reportReg = derive2 { name="reportReg"; version="0.3.0"; sha256="0qwrpn61x69hmgln5fpc58dqfa3pba0lgjjyj0f3fh96wc9jyhq1"; depends=[nlme]; }; reporter = derive2 { name="reporter"; version="1.2.9"; sha256="0aiv4wqv633jiazyf157dwi1bp6qgv6vnsnsral02cp9sm53cpq9"; depends=[crayon fmtr jpeg stringi]; }; @@ -15468,6 +15522,7 @@ in with self; { reshape = derive2 { name="reshape"; version="0.8.8"; sha256="0s6i0sqxg1vldxs6miv8mi0zydxbqzgpmzfiwkj8y7jix3yrfmad"; depends=[plyr]; }; reshape2 = derive2 { name="reshape2"; version="1.4.4"; sha256="1n0jrajpvc8hjkh9z4g8bwq63qy5vy5cgl2pzjardyih4ngcz3fq"; depends=[plyr Rcpp stringr]; }; resourcer = derive2 { name="resourcer"; version="1.1.1"; sha256="0zjr12fxjlw9zwa5n3l7r2m6vrksvczdzyhq3aj3hzqbm148z1cq"; depends=[httr R6]; }; + respR = derive2 { name="respR"; version="2.0.0"; sha256="19pyhplwmghm9qcz6b99nvsr6g3wnilr03ssf1cakh0q8km3x4as"; depends=[assertthat broom cowplot data_table dplyr ggplot2 glue gridExtra lubridate magrittr marelac purrr readxl roll segmented stringr xml2]; }; respirometry = derive2 { name="respirometry"; version="1.3.0"; sha256="1ffhkvf8a8zhkysghd636k47bl7k5bdwkkg4m0pr1zlxpfrif82c"; depends=[birk lubridate marelac measurements minpack_lm PKNCA seacarb segmented]; }; responsePatterns = derive2 { name="responsePatterns"; version="0.1.0"; sha256="0iyx35kq82w18v8c7lfz7x31c2cgywn4xh8hg0ad3gsdygadq8hq"; depends=[]; }; restatapi = derive2 { name="restatapi"; version="0.12.8"; sha256="10x6zik6szvkmjzasv6dpa363jwim1jim9z27jc3x29kd3nw79hl"; depends=[data_table rjson xml2]; }; @@ -15476,7 +15531,7 @@ in with self; { restimizeapi = derive2 { name="restimizeapi"; version="1.0.0"; sha256="1ss6fng5pmqg6cafc256g9ddz8f660c68ysxfan6mn4gdaigz7lb"; depends=[RCurl RJSONIO]; }; restorepoint = derive2 { name="restorepoint"; version="0.2"; sha256="0pjp5dvycvfg75hhj8lrr2lrjn6n6bqj0ziwyd87lyi15b9j8w4s"; depends=[]; }; restrictedMVN = derive2 { name="restrictedMVN"; version="1.0"; sha256="0qynkg244gzq0yjb0716w7g1sxdq66i11ss8jij86h2mz3ykj137"; depends=[MASS]; }; - restriktor = derive2 { name="restriktor"; version="0.3-100"; sha256="0249zhlskvk3ib1vncqh1vfpssh3la7fxd566ag2anfd53a644m8"; depends=[boot ic_infer lavaan MASS mvtnorm quadprog]; }; + restriktor = derive2 { name="restriktor"; version="0.3-400"; sha256="0iaxbjci4334aasx62w61jagv1v51355pyyjfj62392vvz11q4mj"; depends=[boot ic_infer lavaan MASS mvtnorm quadprog]; }; resumer = derive2 { name="resumer"; version="0.0.5"; sha256="0k3s2i102hvsag7jiahgfpjc09646xjpxcpv5x3d91ch3xipdc0b"; depends=[dplyr rmarkdown useful]; }; rethinker = derive2 { name="rethinker"; version="1.1.0"; sha256="02zfx08s5xisv1v4y16iqbddi9kb3fcr249b3414fzvs4nm5as94"; depends=[rjson]; }; rethnicity = derive2 { name="rethnicity"; version="0.2.2"; sha256="0ccx6314gh08bnqca8a5x2bq4fk290lba0k72f0anszyamkvgfnj"; depends=[cli Rcpp RcppEigen RcppThread]; }; @@ -15520,14 +15575,14 @@ in with self; { rfisheries = derive2 { name="rfisheries"; version="0.2"; sha256="16j3hn1py8khqadmh81qsg76c62wzqkaq3fn39z0z5mgynmcm62j"; depends=[assertthat data_table ggplot2 httr rjson]; }; rfishnet2 = derive2 { name="rfishnet2"; version="0.2.0"; sha256="0g90h4353kp7szv3971kb4l5x3x08qx4f9ln85n5g3b3zdg77dkz"; depends=[dplyr ggplot2 pracma rworldmap sf]; }; rflexscan = derive2 { name="rflexscan"; version="1.0.0"; sha256="1azjdri1dnxqd128p3iya1x36bbhhrckmj08rp23jzfi5zd71c8s"; depends=[igraph Rcpp rgdal sp]; }; - rflsgen = derive2 { name="rflsgen"; version="0.1.2"; sha256="1jjayksvk78jg9v6dhxd88lvq18vbnwinvxd490yllnpagfhz23x"; depends=[checkmate raster rgdal rJava]; }; + rflsgen = derive2 { name="rflsgen"; version="1.0.0"; sha256="1ljmdxys25gmy0m928xnp9krq43lmrxwip6vwji0jghy4h9b0f49"; depends=[checkmate jsonlite raster rgdal rJava]; }; rfm = derive2 { name="rfm"; version="0.2.2"; sha256="1s8h9ll4l5xq3m7ib83zrab49p5q4wclk8qiy2hgjr2hq1sb7wak"; depends=[dplyr ggplot2 ggthemes lubridate magrittr RColorBrewer rlang tibble tidyr xplorerr]; }; rfoaas = derive2 { name="rfoaas"; version="2.1.0"; sha256="0w6m3lvfb60a2zfvyc0ksnfllb2ndy45b301vk9f3nr27lxdz6dm"; depends=[httr]; }; - rfordummies = derive2 { name="rfordummies"; version="0.1.5"; sha256="1glzc20sbv90fbazy3wh6drqd5dkh47s3fjqzgm78dkmj6gp9hdv"; depends=[openxlsx]; }; + rfordummies = derive2 { name="rfordummies"; version="0.1.6"; sha256="01xv6ds3h8gvi1wi5hgy3r1dhi0767mcgsnshvhva3bnvf1a8398"; depends=[]; }; rforensicbatwing = derive2 { name="rforensicbatwing"; version="1.3.1"; sha256="1i521h2nmlkhcxfxqir8jfjv0llwr6cz0ck5w6hzplk48044bn16"; depends=[Rcpp]; }; - rfviz = derive2 { name="rfviz"; version="1.0.0"; sha256="0rzyy7r2ybqjnp1g5bbkxydpa93h8q4r71kdaj77r475m2i4kb6b"; depends=[loon randomForest]; }; + rfviz = derive2 { name="rfviz"; version="1.0.1"; sha256="1pxr9bsqg27vgbngj89hhjq0gyzgdlg69rz6kzvvd8gclg42wisv"; depends=[loon randomForest]; }; rgabriel = derive2 { name="rgabriel"; version="0.7"; sha256="1c6awfppm1gqg7rm3551k6wyhqvjpyidqikjisg2p2kkhmyfkyzx"; depends=[]; }; - rgbif = derive2 { name="rgbif"; version="3.6.0"; sha256="083zj5bcbag2qhx2c04ym666lclfyv10w4zd2kvbm7nqhmy8ah99"; depends=[conditionz crul data_table ggplot2 jsonlite lazyeval magrittr oai R6 tibble wellknown whisker xml2]; }; + rgbif = derive2 { name="rgbif"; version="3.7.0"; sha256="03av5xzf13jnrmwg1jgdixvqb991v1z6kw9wvjihhvc842mbd44b"; depends=[conditionz crul data_table ggplot2 jsonlite lazyeval magrittr oai R6 tibble wellknown whisker xml2]; }; rgdal = derive2 { name="rgdal"; version="1.5-28"; sha256="18k1w8cb77h4mw1m5b21r0fng40arb1md24fyriv83ccz8n46m3z"; depends=[sp]; }; rgdax = derive2 { name="rgdax"; version="1.2.1"; sha256="01hpyyhb6jcw9w0q9h4ghgh4cbba27mfl9zdv4vv4ppakvl80czl"; depends=[digest httr jsonlite plyr RCurl]; }; rgee = derive2 { name="rgee"; version="1.1.2"; sha256="0r0mr2gqj75dkga552xfikiiy76h14js8qh29swin3f23xr9dwz0"; depends=[cli crayon jsonlite leafem leaflet magrittr processx R6 reticulate rstudioapi]; }; @@ -15542,14 +15597,16 @@ in with self; { rgexf = derive2 { name="rgexf"; version="0.16.2"; sha256="00c2zka1n3k7p1l0mlchr063s6x58p9r3fb64d4wgl4rvsq55q3f"; depends=[igraph servr XML]; }; rgl = derive2 { name="rgl"; version="0.108.3"; sha256="0fqkx079z9y5b1gdg6qfz2wpw2j8q3ddflfkd9wwrkyacas6xyc9"; depends=[htmltools htmlwidgets jsonlite knitr magrittr R6]; }; rglobi = derive2 { name="rglobi"; version="0.2.27"; sha256="12rqd92i0n7lgnp57a4pfp1fpnhm8v0lmmlfzcy0d8vhvzwgfhw7"; depends=[curl RCurl readr rjson]; }; + rglplus = derive2 { name="rglplus"; version="1.0"; sha256="1yr93laa48aj3rhnz8kih500kngynwnq2px1xnbgya9xsxyc2l5v"; depends=[rgl]; }; rglwidget = derive2 { name="rglwidget"; version="0.2.1"; sha256="0siqxn3gyl98i84p0yha821b4rdrp2i0942mkx819wnf7qwrpqcv"; depends=[rgl]; }; rgnparser = derive2 { name="rgnparser"; version="0.2.0"; sha256="01dmnyyprnayzn21vgdj9058l17kx8z4fisw4bp4lc6yif39q1r9"; depends=[jsonlite readr sys tibble]; }; - rgoogleads = derive2 { name="rgoogleads"; version="0.4.1"; sha256="13fg1swqx761h3jwam0pfg772gagyc3pn551sb75ai44dnji2qwd"; depends=[cachem cli dplyr gargle httr jsonlite magrittr memoise pbapply purrr rappdirs rlang rlist rvest snakecase stringr tidyr withr]; }; + rgoogleads = derive2 { name="rgoogleads"; version="0.5.1"; sha256="1j51pkk747vdryiymhd7j3by5z2dz9qi7mnlyp7vc53j835syzlr"; depends=[cachem cli dplyr gargle httr jsonlite magrittr memoise pbapply purrr rappdirs rlang rlist rvest snakecase stringr tidyr withr]; }; rgoogleslides = derive2 { name="rgoogleslides"; version="0.3.2"; sha256="0h9gws1vcf0zdd21d8b65c2yz9kxppp3218h5lhd5iz879ajwa2i"; depends=[assertthat httr jsonlite R6]; }; rgovcan = derive2 { name="rgovcan"; version="1.0.3"; sha256="0b1fk7w3x60y0j74pglv14i0d76f13pzslghrday04qzkxy9smvd"; depends=[ckanr cli crayon crul tibble]; }; rgplates = derive2 { name="rgplates"; version="0.1.0"; sha256="1pxvccyq8m1dbq4rl0fi4vwp6k5w83gjwpga9r182z87cij97j43"; depends=[rgdal sp]; }; rgr = derive2 { name="rgr"; version="1.1.15"; sha256="1mrnmbh2crhkwdi37q59hx76afvkhgzgaacg3688q7jp23d58z6x"; depends=[fastICA MASS]; }; - rgrass7 = derive2 { name="rgrass7"; version="0.2-7"; sha256="0mk3v6md2cayn7jyfi4225fld51aqv93srzlvk1j53rphi9pzs81"; depends=[XML]; }; + rgraph6 = derive2 { name="rgraph6"; version="2.0-1"; sha256="1gjw7pjjpz0n94rij6qnr3rdikk7hw3l9zf4hzsrry7fb3db5fv6"; depends=[Rcpp]; }; + rgrass7 = derive2 { name="rgrass7"; version="0.2-8"; sha256="1crgrc68j7ps1hwph9qyrpamvysqvvi8q1rf8mghrq87vd7g18z8"; depends=[XML]; }; rgrassdoc = derive2 { name="rgrassdoc"; version="1.0.0"; sha256="18fcacf4v9n8cd27rc2lidwqm04151ya30pcs0bfhkssz80x0zds"; depends=[cli rlang rstudioapi xml2]; }; rgsp = derive2 { name="rgsp"; version="0.2.0"; sha256="1fk0k479srfr0f4a5abyzcrzwy9hr1v5xf0jgs36fbim9bh7njlc"; depends=[dplyr magrittr tibble]; }; rgtmx = derive2 { name="rgtmx"; version="0.1.4"; sha256="0zqab6zhfkc302nsa13nbi5bc45xwrhsrn42g2jnjw2xpnfk3ynz"; depends=[httr jsonlite]; }; @@ -15567,19 +15624,20 @@ in with self; { rhosp = derive2 { name="rhosp"; version="1.10"; sha256="1k0rb4fchjlzinky6ysdvyk0xjsx5986aqwn3yc6s7m3v7y9wb9m"; depends=[]; }; rhub = derive2 { name="rhub"; version="1.1.1"; sha256="05b4phrny85fshismspjbaz1h0klg1fpy4b309si94pnqffxaqx6"; depends=[assertthat callr cli crayon desc digest httr jsonlite parsedate pillar prettyunits processx R6 rappdirs rcmdcheck rematch tibble uuid whoami withr]; }; rhymer = derive2 { name="rhymer"; version="1.1.0"; sha256="00piml975chmmm3ipskzhfbbp5sq47yg5a78hsisssbzwwxsmbs0"; depends=[httr jsonlite]; }; - rhype = derive2 { name="rhype"; version="0.0.1"; sha256="148ssg1rxhw5wsm989fws5dc6lrx23nai22awxmpr1lx06khrm6a"; depends=[R6]; }; + rhype = derive2 { name="rhype"; version="0.2.0"; sha256="0grfa62d54x129l08v22ybfvjvvlzv5la5yxp9wi1a203r792xkr"; depends=[Matrix R6 RSpectra]; }; ri = derive2 { name="ri"; version="0.9"; sha256="00y01n9cx95bjhdpnh7vi0xd5p6al3sxbjszbyxafn7m9mygmnhv"; depends=[]; }; ri2 = derive2 { name="ri2"; version="0.2.0"; sha256="0zadczx7awymn420hf15sci5z1hq5rpid866gpa1wmrhcyh177nh"; depends=[estimatr generics ggplot2 pbapply randomizr]; }; + riAFTBART = derive2 { name="riAFTBART"; version="0.2.0"; sha256="1i2npxr1riip4ac9vlm8bqf72pp3zvl9mhni6w3r1qh53hx8d3q7"; depends=[BART cowplot dbarts doParallel dplyr foreach ggplot2 magrittr MASS MCMCpack msm nnet stringr survival tidyr twang]; }; ribd = derive2 { name="ribd"; version="1.3.1"; sha256="1an3cifgvw7rrsq1plfycpk1yhlsncn83s2f9xl52161iyljwj6g"; depends=[glue kinship2 pedtools slam]; }; ricegeneann = derive2 { name="ricegeneann"; version="1.0.2"; sha256="0wxqp4pfdhvq4mwzjrqi3m9jiayk5bp1ha222mpm4qz1pl41cy9w"; depends=[riceidconverter]; }; riceidconverter = derive2 { name="riceidconverter"; version="1.1.1"; sha256="143f76v3k2q9ddcxf2nzvd04pjgy7p120ln0zkmxpal20c81dwq6"; depends=[dplyr]; }; riceware = derive2 { name="riceware"; version="0.4"; sha256="0pky0bwf10qcdgg9fgysafr35xbmnr9q0jbh56fawj99nbyj3m70"; depends=[random]; }; rich = derive2 { name="rich"; version="1.0.1"; sha256="0kasr9gb85qhngfayqy3fvrsr0a066krwxsx21nsxcnss0mrqygr"; depends=[boot vegan]; }; ricu = derive2 { name="ricu"; version="0.5.1"; sha256="0p5lv9gwy3qkwagj946y60v6qwhpav3iqid4kgfbcxwczjybdapg"; depends=[assertthat backports cli curl data_table fansi fst glue jsonlite openssl prt readr rlang tibble vctrs]; }; - ridge = derive2 { name="ridge"; version="3.1"; sha256="0aznp0bl19fny3ag1xvsqxm2bix3k9wi5v1syj733kb4vsb0wrrp"; depends=[]; }; + ridge = derive2 { name="ridge"; version="3.2"; sha256="08bl83rbv2rqd96383ymanqk2xy0yr6blklrj6rzi95zvw2xq6jp"; depends=[]; }; ridigbio = derive2 { name="ridigbio"; version="0.3.5"; sha256="0526nscxynl3857zybpms1wr3230qby29kxglm919pcdvpjb5kz5"; depends=[httr jsonlite plyr]; }; ridittools = derive2 { name="ridittools"; version="0.1"; sha256="1m9xbwxb277l4cd85qxmpw66gyavpwamgwr8kyf8vqarzfbwiilr"; depends=[]; }; - riem = derive2 { name="riem"; version="0.2.0"; sha256="1b0kag1drn45lmy786xqr94zsbfk16xp4ia9284x753hzcggnfqd"; depends=[httr jsonlite lubridate tibble]; }; + riem = derive2 { name="riem"; version="0.3.0"; sha256="0a0nl1857x7qw8y8n5fq9hfhh1s25cihd2532zxfyvy14icwf72i"; depends=[httr2 jsonlite lubridate magrittr purrr rlang tibble]; }; rifle = derive2 { name="rifle"; version="1.0"; sha256="1r0cfj3vzndgiarl9sb38zmpnpm4p8v9l5cm9c1m6g2q9kvpgpbs"; depends=[MASS]; }; rigr = derive2 { name="rigr"; version="1.0.1"; sha256="0cjk03llklml3h6dmdahdbnxanynii64q664fax62dbkncxg5gqa"; depends=[Exact plyr sandwich survival tibble]; }; riingo = derive2 { name="riingo"; version="0.3.1"; sha256="1ww9ps0v1yga9dwb68crbhf56xw2svl7az95ifrdrswyyikj02vj"; depends=[crayon glue httr jsonlite purrr rlang tibble vctrs]; }; @@ -15593,7 +15651,7 @@ in with self; { rioja = derive2 { name="rioja"; version="0.9-26"; sha256="02af6is38nakzr1hf9688n32m5glk1jyp2d9p4irn0mzk7r6r976"; depends=[mgcv vegan]; }; ripserr = derive2 { name="ripserr"; version="0.1.1"; sha256="1rwsd1yi5vrzdscjgr27fw0d1a6nkc8g2w5hqgqijiwm25h4wl17"; depends=[Rcpp]; }; rise = derive2 { name="rise"; version="1.0.4"; sha256="12r7mbaxp9pjypbpjxlsbqg7spw80gjgm2w0lsvgvclffc50a6ni"; depends=[dplyr ggplot2]; }; - riskCommunicator = derive2 { name="riskCommunicator"; version="0.1.0"; sha256="1f8nfha6sgn52f3qvb2bkawv6c8ivrm5n6sy1ggx9337xjl35baz"; depends=[boot dplyr ggplot2 gridExtra magrittr purrr rlang tidyr tidyselect tidyverse]; }; + riskCommunicator = derive2 { name="riskCommunicator"; version="1.0.0"; sha256="0j4pdz4b0mq116yy9zyz4bf5avvp74q3a026b5hn7dr2xhvp4hb3"; depends=[boot dplyr ggplot2 gridExtra magrittr MASS purrr rlang tidyr tidyselect]; }; riskParityPortfolio = derive2 { name="riskParityPortfolio"; version="0.2.2"; sha256="1n2z1vhslrip209j79wm03wmwqdcnbm939sir2wfs5h2cfv126xk"; depends=[alabama Matrix nloptr quadprog Rcpp RcppEigen]; }; riskPredictClustData = derive2 { name="riskPredictClustData"; version="0.2.6"; sha256="0mvy9299pg374gvvqs9lmj2j0f3bzyy279kjpz7jq35hkgz5wif3"; depends=[gee Hmisc MASS mvtnorm]; }; riskR = derive2 { name="riskR"; version="1.1"; sha256="1qadfyb07idfw0bs006kb3917rzda83di6jmsr22941gv78z1wyv"; depends=[]; }; @@ -15617,7 +15675,7 @@ in with self; { rjdqa = derive2 { name="rjdqa"; version="0.1.1"; sha256="0d7jv3a2a7p7h6jnr5znln06x6m4mksb6cy44xdxir1pwcd1z6br"; depends=[plotrix RJDemetra XLConnect]; }; rje = derive2 { name="rje"; version="1.10.16"; sha256="1a9lxikc5n4sb5fzlw8w8ys65npvlvqfail3mq5zi46smd1s9qp8"; depends=[knitr]; }; rjmcmc = derive2 { name="rjmcmc"; version="0.4.5"; sha256="14rzvp6z5avlcnmlmvb6w4gvlh6v4ncbcai3v4c4svnjv555vz45"; depends=[coda madness mvtnorm]; }; - rjpdmp = derive2 { name="rjpdmp"; version="1.0.0"; sha256="017cbrrmgh4p5almsyxrp86yg3kkg59kz5snnb1xb4qr068zfpm7"; depends=[data_table Rcpp RcppArmadillo]; }; + rjpdmp = derive2 { name="rjpdmp"; version="2.0.0"; sha256="0r0r58zrwab4zxhgbfhh4qk6vbbza00m8h73mz70f5kqp786i9wy"; depends=[data_table Rcpp RcppArmadillo]; }; rjqpd = derive2 { name="rjqpd"; version="0.2.3"; sha256="14vbp9s2859h4n3m3bq830nvxvk58h3mvvdnb27qsalbcfwd94v5"; depends=[]; }; rjson = derive2 { name="rjson"; version="0.2.21"; sha256="1qm27r1w677zg31gsiln60hcciszbymkw78cnaq7s36cbk9mcawq"; depends=[]; }; rjstat = derive2 { name="rjstat"; version="0.4.1"; sha256="0kqnl4wizmain70ady982aldhscf24870shvf3sviknplshhgk8j"; depends=[checkmate jsonlite]; }; @@ -15628,15 +15686,16 @@ in with self; { rknn = derive2 { name="rknn"; version="1.2-1"; sha256="1x9r01314q0wgqwqzd7d13ycjzb4jzghzd3whgjvm2rsmnabai95"; depends=[gmp]; }; rkt = derive2 { name="rkt"; version="1.6"; sha256="1sqij8ivjrrb1lii3jwvgsx9zqv47ib1lhrh6zvvh5a67didwrih"; depends=[]; }; rkvo = derive2 { name="rkvo"; version="0.1"; sha256="0ci8jqf9nc8hb063nckxdnp0nlyr4ghby356lxm00anw44jlmw8v"; depends=[Rcpp]; }; - rlang = derive2 { name="rlang"; version="1.0.1"; sha256="0zxd44pzq620sb0f0vf97vzp8r2sxzv225m0k8rbw3akyz0db7z5"; depends=[]; }; - rlas = derive2 { name="rlas"; version="1.5.0"; sha256="0i1sp8r9r3m9m0r0bn741l9dnz4prn63hfxxzf9i8pshqp1nnnvk"; depends=[BH data_table Rcpp]; }; + rlang = derive2 { name="rlang"; version="1.0.2"; sha256="1k6pzl2x80pycpllvd8n1k62h5cfdwc0hsdwvbicrcxhdwz7rs4d"; depends=[]; }; + rlas = derive2 { name="rlas"; version="1.5.2"; sha256="0ib7nd9fbqyw0bs0p0lh67ml1zfl70h45iyasqv2wvwrmsrh4hy9"; depends=[BH data_table Rcpp]; }; rlc = derive2 { name="rlc"; version="0.4.1"; sha256="1znx2749m9af3jq3avxf50amkhzvimr5ybwmk4g9vhwka86c3vqk"; depends=[hwriter jrc jsonlite plyr R6 stringr]; }; + rlcv = derive2 { name="rlcv"; version="1.0.0"; sha256="00fz949jabbzci22yjlhc7bh4j2h44llplcrgsrbi3h97lrg7hc0"; depends=[statmod]; }; rld = derive2 { name="rld"; version="1.0"; sha256="1glv4q25z14hcwifwg623h77p4awpsn3nk843pnph4sb3p5qbmn3"; depends=[emdbook MASS survival]; }; rle = derive2 { name="rle"; version="0.9.2"; sha256="0sagl0jggg40lihzy7pfq4593rfvc3b3f7g6ggi85s7n18qvwg40"; depends=[]; }; rleafmap = derive2 { name="rleafmap"; version="0.2"; sha256="1i2qczipg7lr6fl35lcl896r54jia7libxx83darrfzc1hd9sdcq"; depends=[knitr raster sp]; }; rlecuyer = derive2 { name="rlecuyer"; version="0.3-5"; sha256="09mniai7v8gapr6hd3zm8sm3vi1zcyhgym389904ykb2yx7l68s7"; depends=[]; }; rless = derive2 { name="rless"; version="0.1.1"; sha256="0ham8kf2hbswrcnc5i5b3svywdwq3kwp9n66n4k9sllahl4x9jdn"; depends=[V8]; }; - rlfsm = derive2 { name="rlfsm"; version="1.0.3"; sha256="0pnxy4gnkbk2alm4bjk6i1yik880li1jqkq63dwm7g441fhx30kx"; depends=[doParallel foreach ggplot2 plyr Rcpp Rdpack reshape2 stabledist]; }; + rlfsm = derive2 { name="rlfsm"; version="1.1.1"; sha256="0pv6136b1b5q46q75msjc6bzzx1wcq23313kv1b3bvpwpiyw52gn"; depends=[doParallel foreach ggplot2 plyr Rcpp Rdpack reshape2 stabledist]; }; rliger = derive2 { name="rliger"; version="1.0.0"; sha256="1gqdwmy073sg48id015q02bx20xsqyc6jpbw4nym3c09cqz681dr"; depends=[cowplot doParallel dplyr FNN foreach ggplot2 ggrepel hdf5r ica irlba Matrix mclust patchwork plyr psych RANN Rcpp RcppArmadillo RcppEigen RcppProgress riverplot rlang Rtsne uwot]; }; rlist = derive2 { name="rlist"; version="0.4.6.2"; sha256="15q99rhbbjq8zd976yjmfnny45dd5fg2p2dv1sljg2kwi66nbppb"; depends=[data_table jsonlite XML yaml]; }; rlmDataDriven = derive2 { name="rlmDataDriven"; version="0.4.0"; sha256="1fhh2siafpqmvpxi2piccxvvn5n38s5d6as6iyn43rgpsslswc8g"; depends=[MASS tseries]; }; @@ -15652,7 +15711,7 @@ in with self; { rmapzen = derive2 { name="rmapzen"; version="0.4.3"; sha256="1n44l4sj6s78nr3hqidabkyg9pradk9c1mqfvzhanj2nrfdrwnqj"; depends=[assertthat digest dplyr geojsonio httr jsonlite maps maptools purrr rgdal sf sp tibble tidyr]; }; rmarchingcubes = derive2 { name="rmarchingcubes"; version="0.1.3"; sha256="0cdmy728irmbd40xsc2k4r2g8am7s72ks7cw465fa92ml2xa6iq8"; depends=[Rcpp RcppArmadillo]; }; rmargint = derive2 { name="rmargint"; version="2.0.2"; sha256="0irq5114dd8pngl6k13r2rrsivijiqfldm6mby0q5a9wrj2vmwc9"; depends=[]; }; - rmarkdown = derive2 { name="rmarkdown"; version="2.11"; sha256="0xcpg9d009a71p5i6jczw02qcp907p5d52lp6vclrsp7019jawck"; depends=[evaluate htmltools jquerylib jsonlite knitr stringr tinytex xfun yaml]; }; + rmarkdown = derive2 { name="rmarkdown"; version="2.12"; sha256="1476b2wl60p3bq4llf6jzpj7c02fp6v04l2865v3qj32m3nskay3"; depends=[bslib evaluate htmltools jquerylib jsonlite knitr stringr tinytex xfun yaml]; }; rmatio = derive2 { name="rmatio"; version="0.16.0"; sha256="1ar8736x5ww4cky4qp8fxlwa7p00yycs31ryrqsmbwhwvg2ddlkk"; depends=[Matrix]; }; rmcfs = derive2 { name="rmcfs"; version="1.3.5"; sha256="0rbq2b9fw1x44v7ifxp8qgp4yciinw2sw9mqp4ms5jsxznpi2pi6"; depends=[data_table dplyr ggplot2 gridExtra igraph reshape2 rJava stringi yaml]; }; rmcorr = derive2 { name="rmcorr"; version="0.4.5"; sha256="018d3rfh2688yqkarcmxqqfbmmzcmj6q3hwinns4kj6xnnlmv1xr"; depends=[psych RColorBrewer]; }; @@ -15671,7 +15730,7 @@ in with self; { rmi = derive2 { name="rmi"; version="0.1.1"; sha256="1y0395l9lhskdrk3x9ps2dmv0sznsba0n6a9fmma33dc9dhywgf9"; depends=[BH Rcpp RcppArmadillo]; }; rminer = derive2 { name="rminer"; version="1.4.6"; sha256="1xydc43is756cy4vsm4k4micj88hhqgyrhb8cmvgv1y8zfrzg2qz"; depends=[adabag Cubist e1071 glmnet kernlab kknn lattice MASS mda nnet party plotrix pls randomForest rpart xgboost]; }; rminizinc = derive2 { name="rminizinc"; version="0.0.8"; sha256="0yyg8ikdlksxlsc8ms4gb8dvpdjk26np6cpm5a7rjp748x8is6qx"; depends=[checkmate R6 Rcpp rjson rlang rlist]; }; - rmio = derive2 { name="rmio"; version="0.3.0"; sha256="0gnd6n43waij1ikr1phv50wqk86zh0kgsdclkm159yr4hflqig01"; depends=[]; }; + rmio = derive2 { name="rmio"; version="0.4.0"; sha256="1gkd8nkqyfpkp6nvqb7c698difak5ymih3vy6njzqd3gwdp09mhy"; depends=[bigassertr ff]; }; rmonad = derive2 { name="rmonad"; version="0.7.0"; sha256="1vjx8kk57xk7c2a05c6kn75n17842ya7j41hqj3wmgq8yvaxrngx"; depends=[digest glue igraph magrittr pryr]; }; rmoo = derive2 { name="rmoo"; version="0.1.7"; sha256="0dg6y9zvky5dy0b9948xdpg9cfbsczk0hm98lnl6wnikbvphijv4"; depends=[cdata dplyr ecr ggplot2 plotly reshape2]; }; rmpw = derive2 { name="rmpw"; version="0.0.4"; sha256="1a49rvdwvmccv4gfir48fw0b9jyrpc2q9zfyk5j9b7nxsx6x7abl"; depends=[gtools MASS]; }; @@ -15682,7 +15741,7 @@ in with self; { rmsfuns = derive2 { name="rmsfuns"; version="1.0.0.1"; sha256="18bpj7xh3kc7pl6ivi3cripam26bsaf9r9099cjf22qndvy18hb6"; depends=[dplyr magrittr PerformanceAnalytics purrr readr tbl2xts xts zoo]; }; rmt = derive2 { name="rmt"; version="1.0"; sha256="165cqnwqr0dx7b8dgq7xlfk4j55p9l6dr5b2rzyvfy5l23k4kckn"; depends=[]; }; rmumps = derive2 { name="rmumps"; version="5.2.1-14"; sha256="1bl3wap6qjdryyrxqv85qnb9dv7xkx56c5y8qsaj2979748gwjjj"; depends=[Rcpp]; }; - rmutil = derive2 { name="rmutil"; version="1.1.7"; sha256="16qk8z2a499c86yklyzfg5jbgk9d5sxh0gpf9rg1xclh0b1vnzqj"; depends=[]; }; + rmutil = derive2 { name="rmutil"; version="1.1.9"; sha256="0g1kf2bf8f34r9qw5x4810kxg6lkml5nh2lnmdmwnkrrb10cqs1s"; depends=[]; }; rmweather = derive2 { name="rmweather"; version="0.1.51"; sha256="0qd49lr12hc39dwg348b021aqxw57pfcb9xxhp51fvnw6gw6bgqd"; depends=[dplyr ggplot2 lubridate magrittr pdp purrr ranger stringr strucchange tibble viridis]; }; rmytarget = derive2 { name="rmytarget"; version="2.4.0"; sha256="1csl5b76r706gzvzhqgg4pdznbdl4i3b0srazwa7xdfc6zbrzljp"; depends=[dplyr httr lubridate purrr stringr tidyr]; }; rnassqs = derive2 { name="rnassqs"; version="0.5.0"; sha256="1mbkv32zidax9i6km93bbi3m7xpnsy805cz4ikdrid84qg94an09"; depends=[httr jsonlite]; }; @@ -15701,7 +15760,7 @@ in with self; { rnpn = derive2 { name="rnpn"; version="1.2.4"; sha256="0lq9c5in0pf3km6zvfnn71wbh34lk3hgav0b9waspmzsgki8fvl1"; depends=[curl data_table httr jsonlite magrittr plyr raster rgdal sp tibble XML]; }; rnr = derive2 { name="rnr"; version="0.2.1"; sha256="1z9bab3qmq8d79bcvjzldbxlah2w8mqp2ifd0cn1348dafwa0dhi"; depends=[assertthat purrr]; }; rnrfa = derive2 { name="rnrfa"; version="2.0.4"; sha256="0sy64bgb94ksgcy37kmj61iphf66i0jpx0qlrcsr24zr92syc1n2"; depends=[curl ggmap ggplot2 httr jsonlite lubridate rgdal sp tibble zoo]; }; - roadoi = derive2 { name="roadoi"; version="0.7.1"; sha256="1diprwir4agp2ifcgfsla1kd5m0y5cnc7ixhh6pqdvlgax5wx96w"; depends=[dplyr httr jsonlite miniUI plyr purrr rlang shiny tibble tidyr]; }; + roadoi = derive2 { name="roadoi"; version="0.7.2"; sha256="1q2mkd7r5aqvahx7rrzv58nd6d13gvlw7kjidqhm7z89na94pn8w"; depends=[dplyr httr jsonlite miniUI plyr purrr rlang shiny tibble tidyr]; }; roahd = derive2 { name="roahd"; version="1.4.3"; sha256="089klcgxry6b8z30h1ssy024lqxqm1bz6qs2kx95qjfl8xgwlwm0"; depends=[dplyr ggplot2 magrittr plotly robustbase scales]; }; robCompositions = derive2 { name="robCompositions"; version="2.3.1"; sha256="13m03r2mcs6srn3hk46lrjhyv5px9jyvqsqbxri1h79f31bji58b"; depends=[car cluster cvTools data_table e1071 fda fpc GGally ggfortify ggplot2 kernlab MASS mclust pls Rcpp RcppEigen reshape2 robustbase robustHD rrcov tidyr VIM zCompositions]; }; robFitConGraph = derive2 { name="robFitConGraph"; version="0.1.0"; sha256="092nc0xnjs2zxd9ij0dl1xggb8mwl8nly284yjhhygmwlwsvhzxm"; depends=[MASS mvtnorm Rcpp]; }; @@ -15713,9 +15772,9 @@ in with self; { robeth = derive2 { name="robeth"; version="2.7-6"; sha256="1x0hzgq7jwl83wwmy581ia8009v0j95aksnr5ywpflnqm76rj6v2"; depends=[]; }; robets = derive2 { name="robets"; version="1.4"; sha256="0lvzfpv6569pjysblhadd05sglx0qvyr9wipb9cpiya4a1992n61"; depends=[forecast Rcpp]; }; robfilter = derive2 { name="robfilter"; version="4.1.2"; sha256="0mvpaf6g694b7175bl3yr6lxbwla4pwp7g4y34qb4klgl5n3nw03"; depends=[lattice MASS robustbase]; }; - robin = derive2 { name="robin"; version="1.0.3"; sha256="1axn687pc6ym5lbrqhsfjw9h5p5famgzqp3q505drysn33fv6nlw"; depends=[DescTools fdatest ggplot2 gprege gridExtra igraph networkD3 qpdf]; }; + robin = derive2 { name="robin"; version="1.1.0"; sha256="11z09g4nzswdqhx5w0vmx1gmxkh0k451hr50avcny6q1r7hykjk6"; depends=[DescTools fdatest ggplot2 gprege gridExtra igraph networkD3 qpdf]; }; robis = derive2 { name="robis"; version="2.8.2"; sha256="0nlvp9w9j2kyv0rrsjkzr3sj77ciz8ink3yr615sjc69iqic34aw"; depends=[curl data_table dplyr ggplot2 httpcache httr jsonlite leaflet mapedit purrr rlang sf stringr tibble tidyr tidyselect xml2]; }; - robmed = derive2 { name="robmed"; version="0.9.0"; sha256="0xjq97jy72hcc03s7z5ckl4f9jwsy2sbhwsr8r7hxgrcc8g1zvwf"; depends=[boot ggplot2 quantreg robustbase shiny sn]; }; + robmed = derive2 { name="robmed"; version="0.10.0"; sha256="020l67zrijcmbfp4nd0hbip1sb5yxhjmjhjk9b5vbk4mz3iqvf4m"; depends=[boot ggplot2 quantreg robustbase sn]; }; robmixglm = derive2 { name="robmixglm"; version="1.2-2"; sha256="117dhnnj55hihpzim45dw3cjm4ma6w21d8j77fybyri2bmpvlypa"; depends=[actuar bbmle boot doParallel doRNG fastGHQuad foreach MASS numDeriv Rcpp VGAM]; }; robnptests = derive2 { name="robnptests"; version="1.0.0"; sha256="0bk3ngwav3r00lf2lb8hq2h578mkfc48gcm845lyxyn7i87vglgg"; depends=[checkmate gtools Rdpack robustbase statmod]; }; robomit = derive2 { name="robomit"; version="1.0.6"; sha256="1yma6m4bxy3hikc9kx7mslqgq1fpi4my7qij9pz77ag836r9hcxm"; depends=[broom dplyr ggplot2 plm tibble tidyr]; }; @@ -15724,11 +15783,11 @@ in with self; { robregcc = derive2 { name="robregcc"; version="1.1"; sha256="06fapmc3jfrfdqvz02jr12dk1d5iw6s3mcb13jz1nm2bybw6r04a"; depends=[magrittr MASS Rcpp RcppArmadillo]; }; robsel = derive2 { name="robsel"; version="0.1.0"; sha256="0vf9hry11hf6bi4pz18c6gh9janx0v6shm2m14kckscvh80z3k5b"; depends=[glasso Rcpp RcppEigen]; }; robservable = derive2 { name="robservable"; version="0.2.1"; sha256="0v4d6yavs58nvwy9bz8wgmm1qb2cqsxkj7rbwngwfzr07ryznd2s"; depends=[htmlwidgets jsonlite]; }; - robslopes = derive2 { name="robslopes"; version="1.0.2"; sha256="04767ggjjsgm31ysk5xw8jvdnjdbk4fmrrsi83ksz746kl0xafzp"; depends=[Rcpp RcppArmadillo]; }; + robslopes = derive2 { name="robslopes"; version="1.1.0"; sha256="0nlz67nmrb9p1a71xnfdfx8c92h0aag68x4xxlvk464nf6s661qv"; depends=[Rcpp RcppArmadillo]; }; robsurvey = derive2 { name="robsurvey"; version="0.2"; sha256="0ipkl3bvnymkrh1apnpidxwxpb1xmw5s66wwxs0kbwvsp6l6qh26"; depends=[KernSmooth survey]; }; robumeta = derive2 { name="robumeta"; version="2.0"; sha256="1ynlfxlzh442jd1cf02j0f948m16d536a30gb4bf7208baqri1vg"; depends=[]; }; robust = derive2 { name="robust"; version="0.7-0"; sha256="1fc4h19b7gn9ya2j2ia8vfgsycwlyc23frj54k11dr45w4qaq6jy"; depends=[fit_models lattice MASS robustbase rrcov]; }; - robust2sls = derive2 { name="robust2sls"; version="0.1.0"; sha256="149wdrjjpzwm2zi1a2wrv6qcdxya77dz1i7d2vqz4vx4qzw55hf6"; depends=[AER doRNG foreach pracma]; }; + robust2sls = derive2 { name="robust2sls"; version="0.2.0"; sha256="0rlajfhrxwap73xdmqdp9gy6qj4vki13i0nqahikr54ky9zypq3r"; depends=[AER doRNG foreach MASS mathjaxr pracma]; }; robustBLME = derive2 { name="robustBLME"; version="0.1.3"; sha256="18wx116l1riy4wn4083kxl637mkyyi9wbwnmvhkgqw3vb36s4vxd"; depends=[doParallel foreach iterators lme4 mvtnorm numDeriv Rcpp RcppArmadillo]; }; robustDA = derive2 { name="robustDA"; version="1.2"; sha256="0kxdqvv17dgnlqp0hkazwfqsg3h4g9gw1w57blwpay67xp4d1jyx"; depends=[MASS mclust Rsolnp]; }; robustETM = derive2 { name="robustETM"; version="1.0"; sha256="1dlj79v08bls500lb81rya6vwx58h97rpq1sy9zwd3mfl9b6awp9"; depends=[]; }; @@ -15740,7 +15799,7 @@ in with self; { robustfa = derive2 { name="robustfa"; version="1.0-5"; sha256="04nk5ipml54snsmiqf5sbhx490i46gnhs7yibf4wscrsj1bh2mqy"; depends=[rrcov]; }; robustgam = derive2 { name="robustgam"; version="0.1.7"; sha256="0s1z7jylj757g91najbyi1aiqnssd207jfm9yhias746540qp3kw"; depends=[mgcv Rcpp RcppArmadillo robustbase]; }; robustlm = derive2 { name="robustlm"; version="0.1.0"; sha256="17l2kr9dc3z02b2jswfxal13md4xfpz4sqjfg6kyg6ilab1cfd06"; depends=[MASS matrixStats]; }; - robustlmm = derive2 { name="robustlmm"; version="2.4-5"; sha256="0y8bjr9xbgnwbg2rilpgfqrdv45g8zxqfajnkfi4r7v0hsr20lz2"; depends=[cubature fastGHQuad ggplot2 lattice lme4 Matrix nlme Rcpp RcppEigen robustbase xtable]; }; + robustlmm = derive2 { name="robustlmm"; version="2.5-0"; sha256="0y15w5vd16nfvs3mmvp496hhvgajfgnpgz6vl3vp5yhs1q2xkynk"; depends=[cubature fastGHQuad ggplot2 lattice lme4 Matrix nlme Rcpp RcppEigen robustbase xtable]; }; robustrank = derive2 { name="robustrank"; version="2019.9-10"; sha256="1xikknrmnh95wpvyljdl7v510ddi1g7a88aw3l630s789nq5i02h"; depends=[kyotil]; }; robustrao = derive2 { name="robustrao"; version="1.0-5"; sha256="1r8v9qjx70s8swh09imq9kzdxg0qhnmk00zrg939mig9b12mw1p6"; depends=[doParallel foreach gmp igraph iterpc quadprog]; }; robustreg = derive2 { name="robustreg"; version="0.1-11"; sha256="08c6dyzki68hzl006s12bkjiirlw2n2isirjh8b79sd6zjrjlh72"; depends=[Matrix Rcpp RcppArmadillo]; }; @@ -15752,7 +15811,7 @@ in with self; { rocc = derive2 { name="rocc"; version="1.3"; sha256="1j15l28c7kv7x850ycjprqi5gpbsl6wfv97h9lbrx11q5l4r9ivb"; depends=[ROCR]; }; roccv = derive2 { name="roccv"; version="1.2"; sha256="18kq2gzcbz97dw168xppql8k3slpkfl8yv1d8ac48damlhvipif1"; depends=[glmnet pROC]; }; rock = derive2 { name="rock"; version="0.5.1"; sha256="1abyr9i2p1xjll6cry8hmbgskwr10ki4r0zw29qg8iz2rpxl0zpp"; depends=[data_tree DiagrammeR DiagrammeRsvg dplyr ggplot2 glue htmltools markdown purrr yaml yum]; }; - rockchalk = derive2 { name="rockchalk"; version="1.8.144"; sha256="07dp1n155b9gfvk8l30h6bhjbhbylsjxfzns08mryn4mxj3nqpnb"; depends=[carData kutils lme4 MASS]; }; + rockchalk = derive2 { name="rockchalk"; version="1.8.151"; sha256="17mfaxn3gj0vac5wdmsjj2z2668cszbpvan7hnxp7ic9bvsm1w2y"; depends=[carData kutils lme4 MASS]; }; rocker = derive2 { name="rocker"; version="0.3.0"; sha256="07vlfhp3m8k4ykfmd513ryqk0005mpj2qi64wrpkcg760rbs6wjv"; depends=[DBI R6 sodium]; }; rockr = derive2 { name="rockr"; version="1.0.0"; sha256="190xaxcbb7miqw5mxyfqqlb2vzacifc8a7a3cqfdlpxra4d4jc25"; depends=[httr jsonlite mime progress]; }; roclang = derive2 { name="roclang"; version="0.1.4"; sha256="1wjpcdlqkfklllxql010yk2v0b6xvlrvmhdfm7ckwry33ijpi14y"; depends=[dplyr magrittr purrr rex rlang roxygen2 stringr tibble tidyr]; }; @@ -15781,7 +15840,7 @@ in with self; { ropenblas = derive2 { name="ropenblas"; version="0.2.10"; sha256="1709kk63d8xv923phadnk30pc895syf4rmfip7v9y3cn734ww38g"; depends=[cli fs getPass git2r glue magrittr pingr RCurl rlang rstudioapi rvest stringr withr XML]; }; ropendata = derive2 { name="ropendata"; version="0.1.0"; sha256="1bv6y241abs6pb4wq5ybx9x4zh72kf8ffs3vlcgdsmhw4jwrsxdl"; depends=[httr jsonlite]; }; ropensecretsapi = derive2 { name="ropensecretsapi"; version="1.0.1"; sha256="0d4yl0h4am3blskdnzk119hk374c3vx0cg99r20w07yh8jfafrw7"; depends=[RCurl RJSONIO]; }; - roperators = derive2 { name="roperators"; version="1.1.0"; sha256="0klmk1jmh1iysgf345qa6qyjmn1pkz072ha254k90flprgicg7c6"; depends=[]; }; + roperators = derive2 { name="roperators"; version="1.2.0"; sha256="1l9xyb07wi2bls2037a2428hzqbsay01yd3rzviznxcnaarak5ck"; depends=[]; }; ropercenter = derive2 { name="ropercenter"; version="0.3.1"; sha256="1lpqwlw1wqj1whv0wma2y4h16pc15f4c38icwq63nhicn4whzr5w"; depends=[dplyr foreign haven magrittr readr rio RSelenium stringr tibble tidyr]; }; roprov = derive2 { name="roprov"; version="0.1.2"; sha256="16w9i7svlkn2wbv35890f1zpcxilj0ar28d2xrdvmx7ni9vrz61q"; depends=[CodeDepends fastdigest igraph]; }; roptim = derive2 { name="roptim"; version="0.1.5"; sha256="0qcdvs62k9b0dsa68z86yn90ps5aqhxgwg43p2pjml6jjid4rjn9"; depends=[Rcpp RcppArmadillo]; }; @@ -15806,7 +15865,7 @@ in with self; { roxygen2md = derive2 { name="roxygen2md"; version="1.0.0"; sha256="1gvrfy0sk5qi8d93zxj5f7xgnnw0w38zyxdik4ckf0pkk0zdm27a"; depends=[desc devtools enc rex rlang tibble usethis withr]; }; roxytest = derive2 { name="roxytest"; version="0.0.1"; sha256="166m0pklgryh3vildg0bvzh9gs3p71sf61ivgkvkvyy9vhvnp3jf"; depends=[roxygen2]; }; royston = derive2 { name="royston"; version="1.2"; sha256="1rywc89qzx0hldbq10201bjdhz60pq2gmgd9b9j52mza3w4canjz"; depends=[moments nortest]; }; - rpact = derive2 { name="rpact"; version="3.2.1"; sha256="0wblcdmy0cpal4spi9cqd7vjfkg04kfqa9k7qxf798b3a449lbyi"; depends=[Rcpp]; }; + rpact = derive2 { name="rpact"; version="3.2.3"; sha256="0znpxqnhvz3vkhv5y3qga8dv4i1b4dgbim1lfqpfq29jw906hsis"; depends=[Rcpp]; }; rpanel = derive2 { name="rpanel"; version="1.1-5"; sha256="0656hxj17arjma8sk0xrjicv6mh7iyxhrvj36q4wdvxwlrvm76p3"; depends=[]; }; rpart = derive2 { name="rpart"; version="4.1.16"; sha256="0p22657j6ps6z1dn0ja2fhq4k5xd1rv3cpwzk6nmjd2si8jpbv17"; depends=[]; }; rpart_LAD = derive2 { name="rpart.LAD"; version="0.1.2"; sha256="1v1arv5b02n0jvyifb5km9w3z3wxg9x9g3g4xck4s319z5g6lp7n"; depends=[Rcpp rpart]; }; @@ -15838,24 +15897,24 @@ in with self; { rprime = derive2 { name="rprime"; version="0.1.2"; sha256="1h54vclc800pir3vxqcq4cmmxy9fcar1fydqmba2dzpj8dvlad7v"; depends=[assertthat plyr stringi stringr]; }; rprintf = derive2 { name="rprintf"; version="0.2.1"; sha256="0rwqpln0igxb4m6d6jyp7h3shfb8sbp0kj7cgkffjp88hn9qm4h3"; depends=[stringi]; }; rprojroot = derive2 { name="rprojroot"; version="2.0.2"; sha256="07wy07yhms8zln9qb0iwx69dq08h4lrdi8kavjcplfxcskq638az"; depends=[]; }; + rprojtree = derive2 { name="rprojtree"; version="1.0.0"; sha256="0414srpgx2jgf8jaznpin131hiih17avx45vggf812b3xcicm11b"; depends=[dplyr jsonlite magrittr rjson]; }; rpsftm = derive2 { name="rpsftm"; version="1.2.7"; sha256="0ncf9ci39pd7p048cgvhl6phhk975xwyjm4aqs1b4hjy1nml4iz2"; depends=[ggplot2 survival]; }; - rpsychi = derive2 { name="rpsychi"; version="0.8"; sha256="1h40kbqvvwwjkz5hrclj6j22zhav3yyfbbhqahs1whwjkksnam4w"; depends=[gtools]; }; rptR = derive2 { name="rptR"; version="0.9.22"; sha256="0vvjc6qiq71d5wckl77z606q1fp43mgrfzp1bxcab96n5whb2r9k"; depends=[lme4 pbapply]; }; rpubs = derive2 { name="rpubs"; version="0.2.2"; sha256="18cnzhcvm7gx4k01ysqay53smrf8xqlbaszq41mny5c7qqh1fvpz"; depends=[rvest xml2]; }; - rpymat = derive2 { name="rpymat"; version="0.1.1"; sha256="067czg4wkpkgrrw78j9r62i1b82bzfsxgx4mdgab2wq2szdij6rn"; depends=[fastmap rappdirs reticulate]; }; + rpymat = derive2 { name="rpymat"; version="0.1.2"; sha256="1wq60xspjfzmpax79x6sd3bwa3m63mfklpdv7x797p1d0v636lhy"; depends=[fastmap glue IRkernel jsonlite rappdirs reticulate rstudioapi]; }; rqPen = derive2 { name="rqPen"; version="2.2.2"; sha256="077kdvfdyp5h8630k8jigbz8mfyby8vkjiqxpqv0wfi6cqcjlaf2"; depends=[quantreg regpro]; }; rqdatatable = derive2 { name="rqdatatable"; version="1.3.1"; sha256="1ml83gw9m9945qws2pi0x3bzm1jn4rh8n7zwivbir685hfprbhvn"; depends=[data_table rquery wrapr]; }; - rquery = derive2 { name="rquery"; version="1.4.8"; sha256="06riv819rlmd6i70g7k2cflzjs8z9k6cw0flk7mzggqkvz5v79yv"; depends=[wrapr]; }; + rquery = derive2 { name="rquery"; version="1.4.9"; sha256="12m80vr2sxm2ivvd1a27jy6vh9xvk5z4irlkaxm1f0sxi462brra"; depends=[wrapr]; }; rr = derive2 { name="rr"; version="1.4"; sha256="1c2h6ibjfwrjfqh1if3c90pdh0g2rf3p71j4p9w23xbbrx2l80pl"; depends=[arm coda magic MASS]; }; rr2 = derive2 { name="rr2"; version="1.0.2"; sha256="099vjg91ni2bnxlra18pvgsvzrl28zrj639cdjrh3wkpqv99d04q"; depends=[ape lme4 Matrix nlme phylolm]; }; rrBLUP = derive2 { name="rrBLUP"; version="4.6.1"; sha256="1ny48ra25rzx3k69pmzpd31ka2zhqyqiq1v7ann862j3ris0w8z9"; depends=[]; }; - rrapply = derive2 { name="rrapply"; version="1.2.3"; sha256="042b7q94lrprxxcyjw8cn3y20dxvq77yk0cihn2xk885gawhwxm6"; depends=[]; }; + rrapply = derive2 { name="rrapply"; version="1.2.4"; sha256="06kdkclvcxyw5hsy18azz7345140079r134dksyb6wv94aiplzkm"; depends=[]; }; rrat = derive2 { name="rrat"; version="1.0.0"; sha256="1j1jd32pgggn5cqv66l63sw5p4hblgpznf33wd0zdbfapwy8rx4r"; depends=[quantreg]; }; - rrcov = derive2 { name="rrcov"; version="1.6-1"; sha256="142x60zcgz61iw0ps78hh4cmny3ch0hb3lac6z87bhys5c7m0fwz"; depends=[lattice mvtnorm pcaPP robustbase]; }; - rrcov3way = derive2 { name="rrcov3way"; version="0.2-2"; sha256="0rkkm23njjyradi4qv4jsxdsdda141frxm2rqa92d4bdrgn2m7zx"; depends=[nnls pracma robustbase rrcov ThreeWay]; }; + rrcov = derive2 { name="rrcov"; version="1.6-2"; sha256="18x8y2b9n2plpn4086nkjk9c27p7gb78kbrv5pj9r8fb0idl5rn5"; depends=[lattice mvtnorm pcaPP robustbase]; }; + rrcov3way = derive2 { name="rrcov3way"; version="0.2-3"; sha256="0axgdxp216h1zdi4bb4hiynkr0kjxypdzxga51qq430pv9sdl6n0"; depends=[nnls pracma robustbase rrcov ThreeWay]; }; rrcovHD = derive2 { name="rrcovHD"; version="0.2-7"; sha256="1srxgw5qcgpmxqfplvbrlryxvkx0mic5y7v5lxgfvqvlmcb3rm3f"; depends=[pcaPP pls Rcpp robustbase robustHD rrcov spls]; }; rrcovNA = derive2 { name="rrcovNA"; version="0.4-15"; sha256="0r60chxm7bpc6sis60rp8k8xchwfrfa3lrfaidvv22ipx2q0psp7"; depends=[cluster lattice norm robustbase rrcov]; }; - rrd = derive2 { name="rrd"; version="0.2.2"; sha256="104iz2y49vzm92a8nrvgzrjyljxl467mp1hjnjmzl4rhf9kl809y"; depends=[assertthat tibble]; }; + rrd = derive2 { name="rrd"; version="0.2.4"; sha256="05njzrgd5p39zmyqxgnb2x9q3c7669fsv76vspdv9i9n804z5d5d"; depends=[assertthat tibble]; }; rrecsys = derive2 { name="rrecsys"; version="0.9.7.3.1"; sha256="1qnjriv1xq4gjjhzz8jxrbk88mw5xddl2l2i4bmfhnxhi51d2rk3"; depends=[ggplot2 knitr MASS Rcpp registry]; }; rredis = derive2 { name="rredis"; version="1.7.0"; sha256="0wzamwpmx20did8xj8x9dllri2ps83viyqjic18ari7i4h1bpixv"; depends=[]; }; rredlist = derive2 { name="rredlist"; version="0.7.0"; sha256="1w77cnfrybmqnadsmfkpjv5m49kkr7yc6kcqq165lmj3bijnprnj"; depends=[crul jsonlite]; }; @@ -15873,6 +15932,7 @@ in with self; { rrum = derive2 { name="rrum"; version="0.2.0"; sha256="0w0f2n14if2b8x7n6v8y8q2vghd8j7xm1xhpxnvy3z50flinwgm7"; depends=[Rcpp RcppArmadillo rgen simcdm]; }; rsae = derive2 { name="rsae"; version="0.1-5"; sha256="1f3ry3jwa6vg2vq2npx2pzzvfwadz8m48hjrqjk860nfjrymwgx5"; depends=[]; }; rsample = derive2 { name="rsample"; version="0.1.1"; sha256="01xwhj4zfvxbv9cjb6mbz3aphxqc3cnjjx1xy2yx2wd94fbka42z"; depends=[dplyr ellipsis furrr generics lifecycle purrr rlang slider tibble tidyr tidyselect vctrs]; }; + rsat = derive2 { name="rsat"; version="0.1.18"; sha256="1idm50m94qx4fgri05wwjb49w7fdzl911g1fa138y5rm6wkawsc5"; depends=[calendR curl fields httr leafem leaflet raster Rdpack rjson rvest sf sp stars terra tmap XML xml2 zip]; }; rsatscan = derive2 { name="rsatscan"; version="0.3.9200"; sha256="00vgby24jknq8nl7rnqcwg7gawcxhwq8b7m98vjx2hkqx39n4g21"; depends=[foreign]; }; rsbp = derive2 { name="rsbp"; version="0.1.0"; sha256="0aardngvj9apn8q5vhfpv67rf7d5iqb7xdq7rh8xmgr8341fvbgc"; depends=[dplyr lubridate magrittr purrr reshape2 tibble tidyr xml2]; }; rscala = derive2 { name="rscala"; version="3.2.19"; sha256="1wq0wrdbh0gi0bx4m9526qlbjm7nxxqgc17ikdx5mrhcy2f61hjk"; depends=[]; }; @@ -15881,7 +15941,7 @@ in with self; { rsconnect = derive2 { name="rsconnect"; version="0.8.25"; sha256="1kyr4v7vds2yw3xmkk2yr56ylz1h95944brylwvwmwj5yxvm419w"; depends=[curl digest jsonlite openssl packrat rstudioapi yaml]; }; rscontract = derive2 { name="rscontract"; version="0.1.2"; sha256="0gn0xcvg9nj6m97g4si6bgmgaj6hxpicz8yig7n84jnczh6w510x"; depends=[]; }; rscopus = derive2 { name="rscopus"; version="0.6.6"; sha256="0kl6rv0j2396b8izvy0lp1f588il6w3yhq6d4swv8x8z14rsgcpw"; depends=[dplyr glue httr jsonlite plyr tidyr]; }; - rscorecard = derive2 { name="rscorecard"; version="0.20.0"; sha256="0psh53r8hvyvg7n20p7dl2qnd5gznx1lfkxqrc05kfksl4zvrrm5"; depends=[dplyr httr jsonlite lazyeval magrittr purrr tidyr tidyselect]; }; + rscorecard = derive2 { name="rscorecard"; version="0.21.0"; sha256="0jf7pan0v50sg8nz72c5rp3pi34b0r75j7laq9idqsfcgsp0flaj"; depends=[dplyr httr jsonlite lazyeval magrittr purrr tidyr tidyselect]; }; rsdNE = derive2 { name="rsdNE"; version="1.0.0"; sha256="1faa6m2y4i6dqzgzj8glfcf5j438m3qqxcz1rgk7w20x3g24ddyx"; depends=[]; }; rsdepth = derive2 { name="rsdepth"; version="0.1-5"; sha256="064jbb6gnx0sm41w3sbi6mvsbzsfkjqfici6frk8sfm9ybvm591j"; depends=[]; }; rsdmx = derive2 { name="rsdmx"; version="0.6"; sha256="1sw8pp2j22rs1nlsyphyqbhywgplan9qmrs5wm9wvrn5g26k4bg9"; depends=[httr plyr R6 XML]; }; @@ -15897,7 +15957,7 @@ in with self; { rslp = derive2 { name="rslp"; version="0.2.0"; sha256="186k1gngirqhvhii4ysq77wjf5gf75c7gya73minb0pfg9fn16l7"; depends=[magrittr plyr stringi stringr tokenizers]; }; rslurm = derive2 { name="rslurm"; version="0.6.1"; sha256="19451icfh7snjbbmpzpr1hrdf52q8ijv0ag1di3y55r2la3jxxcf"; depends=[whisker]; }; rsm = derive2 { name="rsm"; version="2.10.3"; sha256="1dcjsn3wa7rqdpixh37vjgk3z5siwlyn70qffp49m3awn258hwpg"; depends=[estimability]; }; - rsmatrix = derive2 { name="rsmatrix"; version="0.2.0"; sha256="0d3y0ihz32jhqmzlgh7lqw4c122dbai2ic56qkalg63ckfswpzrw"; depends=[Matrix]; }; + rsmatrix = derive2 { name="rsmatrix"; version="0.2.1"; sha256="02l7hcbwjilcpmgxi2gs9hcf75kb7g2m2b31rmwd2kvhdn2w4s3q"; depends=[Matrix]; }; rsnps = derive2 { name="rsnps"; version="0.5.0.0"; sha256="1pnf3j2hdgx4is1387ysrrg3izq1jyn2p00ia5hhdzkkfl1pbqcr"; depends=[crul data_table httr jsonlite plyr stringr]; }; rsoi = derive2 { name="rsoi"; version="0.5.4"; sha256="1gchznfshp91i3if8077qph26flxzwa2xrw3q488ah50725d63hw"; depends=[curl memoise]; }; rsolr = derive2 { name="rsolr"; version="0.0.11"; sha256="0h82x9ihzgw9l1ksn1l5w7x3vgyy6zlbdbvg9a4pa1iinhlf87ic"; depends=[BiocGenerics graph RCurl restfulr rjson S4Vectors XML]; }; @@ -15945,7 +16005,7 @@ in with self; { rtext = derive2 { name="rtext"; version="0.1.22"; sha256="0wsy0iqzbfin92pw0bqj4bxm2p4f2y4frr137l6c3yvd0jrax3q4"; depends=[digest hellno magrittr R6 Rcpp RSQLite stringb]; }; rtf = derive2 { name="rtf"; version="0.4-14.1"; sha256="032ff0yavqmd2d9svgwkmvxwh0cxjbac6pj48v4cshi898f02rhh"; depends=[R_methodsS3 R_oo]; }; rtgstat = derive2 { name="rtgstat"; version="0.3.0"; sha256="1zg2xhypv0pycabzn423df9fivyys2vgdwsy60a43s8j9al7iz63"; depends=[cli dplyr httr2 purrr snakecase stringr tidyr]; }; - rticles = derive2 { name="rticles"; version="0.22"; sha256="0jgsmqwwqzvsxcbsm9fx0rp724mn3ipi70883bhvm7n9i8mq877m"; depends=[knitr rmarkdown tinytex xfun yaml]; }; + rticles = derive2 { name="rticles"; version="0.23"; sha256="1ipblw3rmkma22jl2hf1pyfm6l8k31zcmm3swmwii6k0x7khiav1"; depends=[knitr rmarkdown tinytex xfun yaml]; }; rticulate = derive2 { name="rticulate"; version="1.7.2"; sha256="0xgl36m63z9kzqj0srjp3lb65hfizszlgw0kwjwc9li607q4fy6m"; depends=[dplyr ggplot2 glue magrittr mgcv purrr readr rlang stringr tibble tidymv tidyr tidyselect tidyverse]; }; rtide = derive2 { name="rtide"; version="0.0.9"; sha256="0gr0j52jy7y1w1s0s88rjv9l85yvavypagmi0qw2ix9ca2xadlzl"; depends=[abind chk dttr2 tibble]; }; rties = derive2 { name="rties"; version="5.0.0"; sha256="1mxgzrlf41hhawab2664az151fmmhm8ivnnimmzm538yliilc0b7"; depends=[DataCombine DescTools deSolve dplyr ggplot2 gridExtra interactions lattice lme4 MASS mclust nlme nnet plyr zoo]; }; @@ -15969,6 +16029,7 @@ in with self; { rtweet = derive2 { name="rtweet"; version="0.7.0"; sha256="05pbvxm2vmf6935b9s6663k3aifnkr3m52wh2jvnplmrwyrfpn9n"; depends=[httpuv httr jsonlite magrittr progress Rcpp tibble]; }; rtype = derive2 { name="rtype"; version="0.1-1"; sha256="0wjf359w7gb1nrhbxknzg7qdys0hdn6alv07rd9wm6zynnn1vwxy"; depends=[]; }; rtypeform = derive2 { name="rtypeform"; version="2.1.0"; sha256="02qnsw2nd3fnyr0gbmx3690b78k899dxf04g4bqpjlg9y38g1cnr"; depends=[assertthat dplyr glue httr jsonlite lubridate purrr rlang tibble tidyr]; }; + rubias = derive2 { name="rubias"; version="0.3.3"; sha256="0xphah4axkchscxcxx7231cb67pqfi4smvy3lazlzbyysgwmr1kk"; depends=[dplyr gtools magrittr Rcpp RcppParallel readr rlang stringr tibble tidyr]; }; rucm = derive2 { name="rucm"; version="0.6"; sha256="1n6axmxss08f2jf5impvyamyhpbha13lvrk7pplxl0mrrrl5g0n8"; depends=[KFAS]; }; rucrdtw = derive2 { name="rucrdtw"; version="0.1.4"; sha256="0865x8i2n63xjbq0pzalm4gd6rpg72yrcsm4rw40a3kzy2svvnlm"; depends=[Rcpp]; }; rugarch = derive2 { name="rugarch"; version="1.4-7"; sha256="0i9483gk0x8jhxx9zsh0p3lbs8vslnchb3j78slpzgsc6am43zjh"; depends=[chron ks numDeriv Rcpp RcppArmadillo Rsolnp SkewHyperbolic spd xts zoo]; }; @@ -15980,7 +16041,7 @@ in with self; { runcharter = derive2 { name="runcharter"; version="0.2.0"; sha256="0n4jkgvlbpafjks22fjackazp246c7skphirjsrzkrg169qwdin0"; depends=[data_table ggplot2 magrittr zoo]; }; runes = derive2 { name="runes"; version="0.1.0"; sha256="1s2vhwya434q70j4aq4qbds8wivscc5cyldr5pch7p41nqj0j7aw"; depends=[]; }; runexp = derive2 { name="runexp"; version="0.2.1"; sha256="0pcxwz0kpfrcsfalwlcwp81k3dyc9rqm9rba25xkp51bwz5scv64"; depends=[doParallel foreach]; }; - runjags = derive2 { name="runjags"; version="2.2.0-3"; sha256="0a5m1nlyrph22s0crmajacy4n4fw9j0bmg1srkgfrygcryqc07qv"; depends=[coda lattice]; }; + runjags = derive2 { name="runjags"; version="2.2.1-5"; sha256="0jj5xacp6f3g7mkz6yd2qay149qmq2jmiza0a5gg42yc8jqb7h52"; depends=[coda lattice]; }; runner = derive2 { name="runner"; version="0.4.1"; sha256="1iic84ab6gbikc2qfqhdg5i48i8hldz59l0k4466n8v6ha2k7hxi"; depends=[Rcpp]; }; runonce = derive2 { name="runonce"; version="0.2.3"; sha256="04lmzw9ldc3b6zdc7sr3mrfiam24372j11l5p1y9i2zjb9rxk1nn"; depends=[bigassertr urltools]; }; runstats = derive2 { name="runstats"; version="1.1.0"; sha256="0n9348af60j8a2mwgbafabspb4nm45ry92zlzmynja06zyx8lb2d"; depends=[fftwtools]; }; @@ -15990,7 +16051,7 @@ in with self; { ruta = derive2 { name="ruta"; version="1.1.0"; sha256="1qr2ryz55h2j3wlwg0535lhmk2ydm0idfxl07rlfxq1pi32cjms1"; depends=[keras purrr R_utils]; }; rutifier = derive2 { name="rutifier"; version="1.0.4"; sha256="045pr8apd105azs1glpwqrbamglqddxfpml9yrfrlaivz3fjd9l8"; depends=[R_utils]; }; ruv = derive2 { name="ruv"; version="0.9.7.1"; sha256="1n4q9mrp9f644spbns6bbnzmlabrg90hwkdfg3hnm3rxp9b4xid0"; depends=[ggplot2 gridExtra scales]; }; - rv = derive2 { name="rv"; version="2.3.4"; sha256="0kn56agxv6p861r247yhwfkp8pj33bghy5444a6f3y22yyzc8ngz"; depends=[]; }; + rv = derive2 { name="rv"; version="2.3.5"; sha256="1rjbhlvd7cxn7yw001p859zl5ibxl4di03j1aadm4zycq1zyr6q7"; depends=[]; }; rvHPDT = derive2 { name="rvHPDT"; version="3.0"; sha256="05nrfnyvb8ar7k2bmn227rn20w1yzkp1smwi4sysc00hyjrlyg8s"; depends=[gtools]; }; rvTDT = derive2 { name="rvTDT"; version="1.0"; sha256="09c2fbqnlwkhaxfmgpsdprl0bb447ajk9xl7qdlda201fvxkdc8v"; depends=[CompQuadForm]; }; rvalues = derive2 { name="rvalues"; version="0.7.1"; sha256="0vgizlm5g6mnzvwsprgg0wj0k2y3nc8zn1bqdaw58py92mqpvj1d"; depends=[]; }; @@ -16010,6 +16071,7 @@ in with self; { rwebstat = derive2 { name="rwebstat"; version="1.1.0"; sha256="106dkhlr33ii17q45c1hrmbslwsj1qlmx325skch2q71mv7ii0lj"; depends=[dplyr getPass htmltools httr jsonlite readr stringr]; }; rwfec = derive2 { name="rwfec"; version="0.2"; sha256="0wmalfms59zi8jdn2s2qbcdckfkifl9vg19hzx4389mm5gk6qsbh"; depends=[Rcpp]; }; rwhatsapp = derive2 { name="rwhatsapp"; version="0.2.4"; sha256="004d0cigay7bz754lrxjdwp1xsclc23wh03dlzyby900xcdizxk7"; depends=[stringi tibble]; }; + rwicc = derive2 { name="rwicc"; version="0.1.3"; sha256="14jyc0qq6rxrmwvwdm59axib72q347s6ra8j1h97p75ah59kxndr"; depends=[arm biglm dplyr ggplot2 lubridate magrittr pryr scales]; }; rworldmap = derive2 { name="rworldmap"; version="1.3-6"; sha256="1q1h0n9qr0m5pdx10swrh9ddsvdj8kv5nqngrf3lnx9rg9iwivjk"; depends=[fields maptools sp]; }; rworldxtra = derive2 { name="rworldxtra"; version="1.01"; sha256="183z01h316wf1r4vjvjhbj7cg4xarn4b8qbmnn5y7nrrdndzi163"; depends=[sp]; }; rwstats = derive2 { name="rwstats"; version="0.1"; sha256="10jj2lkilysz7mmysblj6l4jjc560rqsps0ivkvyr7caj8gfhdlb"; depends=[]; }; @@ -16017,7 +16079,7 @@ in with self; { rwty = derive2 { name="rwty"; version="1.0.2"; sha256="0p0bpq5dk8vjqx8ry364xhaq3rgxa49planapggicg7by2mhaacc"; depends=[ape coda GGally ggdendro ggplot2 phangorn plyr reshape2 viridis]; }; rwunderground = derive2 { name="rwunderground"; version="0.1.8"; sha256="02p26gkicd5v511kb04p1h3wxj57r7j5vr97n3ibywc6ivz7nqxa"; depends=[countrycode dplyr httr lubridate tibble]; }; rxSeq = derive2 { name="rxSeq"; version="0.99.3"; sha256="0g0n2pzbssz61psghjp1vrlspgph4s39x1k1zhcz7ivdn5pjb2nx"; depends=[MASS numDeriv VGAM]; }; - rxylib = derive2 { name="rxylib"; version="0.2.6"; sha256="0z0mfk5g7jdrw28f6jzifis2jsw35w7g1p0bv3b6a4rfmbnjhmwk"; depends=[BH Rcpp]; }; + rxylib = derive2 { name="rxylib"; version="0.2.7"; sha256="1vc1g1vm61xhf2dvaxvz2y9z7mqk7508068slq83fjcdnkc1pbfr"; depends=[BH Rcpp]; }; ryandexdirect = derive2 { name="ryandexdirect"; version="3.6.0"; sha256="0f1z8gp1pxfqx694alj435ihzxvd9ban04b1clzipgdq9la1hza8"; depends=[bitops data_table dplyr httr jsonlite magrittr purrr readr stringr tidyr xml2]; }; rym = derive2 { name="rym"; version="1.0.5"; sha256="0brh8hm3x21swypnzj3bbbf7njgarsj4804fp5lcqlr4nadzx26y"; depends=[httr purrr stringr]; }; ryouready = derive2 { name="ryouready"; version="0.4"; sha256="1d9z3paxcrkwsgn5g83x57jwz2iqarks30x0bwg48i5ispw6xbr3"; depends=[car ggplot2 stringr]; }; @@ -16027,7 +16089,7 @@ in with self; { s2 = derive2 { name="s2"; version="1.0.7"; sha256="0gwydn6wdl675ydkcckrci6ylcx30qn8nfhmrp4qx4r9mv3c2410"; depends=[Rcpp wk]; }; s20x = derive2 { name="s20x"; version="3.1-31"; sha256="0gnp703blgawfymd6nxz98w8g7sabagrnk3qc3d3cxj887w83gih"; depends=[]; }; s2dv = derive2 { name="s2dv"; version="1.1.0"; sha256="1sx7zmd0m0ny3jm7m5r1x327pw0qn8j0ny02yv6ki7kpbh6mk0pw"; depends=[abind bigmemory ClimProjDiags easyNCDF mapproj maps multiApply NbClust ncdf4 plyr SpecsVerification]; }; - s2dverification = derive2 { name="s2dverification"; version="2.10.0"; sha256="0sf47jxhw463qfaajiqla21nz7343fw3fzkyzyq2j8zdp7lj7xr2"; depends=[abind bigmemory GEOmap geomapdata mapproj maps NbClust ncdf4 plyr SpecsVerification]; }; + s2dverification = derive2 { name="s2dverification"; version="2.10.1"; sha256="06syzn04da3dka1j936hiqqnpif56mb9q2s42bfv95467zvvf3pg"; depends=[abind bigmemory GEOmap geomapdata mapproj maps NbClust ncdf4 plyr SpecsVerification]; }; s2net = derive2 { name="s2net"; version="1.0.1"; sha256="1f6lc8azx8lax7jc5ggzirwnp5d9ka2plimfkg70vx783xf56zaw"; depends=[MASS Rcpp RcppArmadillo]; }; s4vd = derive2 { name="s4vd"; version="1.1-1"; sha256="1rp3z42nxmrvb942h3c5cl544lngzx7nrnnr4zjw7dq495bym7yp"; depends=[biclust foreach irlba]; }; sAIC = derive2 { name="sAIC"; version="1.0"; sha256="1ih63cfs98kb61gwbmrx2yq7iacb5qa1qrh1a264041qd27r5pj5"; depends=[]; }; @@ -16052,13 +16114,18 @@ in with self; { sads = derive2 { name="sads"; version="0.4.2"; sha256="1j6vdjvpnbqp4kwbvhcl8p51ln29mmk9n150718wsqlifb8d1lw9"; depends=[bbmle GUILDS MASS poilog VGAM]; }; sae = derive2 { name="sae"; version="1.3"; sha256="1ncrlzgnga9pfa2j8x1y6axl2665rp08aff98zrim6gq6n6yap8z"; depends=[lme4 MASS]; }; saeBest = derive2 { name="saeBest"; version="0.1.0"; sha256="0s68w9cikhpac1kdlm1pphvnks1izacs5s87d7r380c3lkgkzd76"; depends=[sae]; }; - saeHB = derive2 { name="saeHB"; version="0.1.0"; sha256="1ny22mbf22zlpzl9kh8gxkldi49slw584nvwwi94rvs1wa8j9b8x"; depends=[coda rjags stringr]; }; + saeHB = derive2 { name="saeHB"; version="0.2.0"; sha256="0ahll2jqn7bxd0l629n8zj80y37acspy2m6vhjbg96206i49mnr5"; depends=[CARBayesdata coda MASS nimble rjags stringr]; }; + saeHB_hnb = derive2 { name="saeHB.hnb"; version="0.1.0"; sha256="00sms01xb290h555v5ngp5vnaancq165mcvli8dmni0mfdx5i7p3"; depends=[coda rjags stringr]; }; + saeHB_panel = derive2 { name="saeHB.panel"; version="0.1.0"; sha256="1nj237lpypz9vpamic4qm17x0p36yqdy8mmgy778c1dhmpvmwrfs"; depends=[coda rjags stringr]; }; + saeHB_spatial = derive2 { name="saeHB.spatial"; version="0.1.0"; sha256="0fqc3c5y4rwfpgfbwfsrdhqlwjbal28wi9djm1vlncr8phkzfpln"; depends=[coda rjags stringr]; }; + saeHB_twofold = derive2 { name="saeHB.twofold"; version="0.1.0"; sha256="0jmabk649lfsrjx4an0a8x5kpb4agfw9gqjilsf1pmqvq725a9bv"; depends=[coda data_table rjags stringr]; }; + saeHB_zinb = derive2 { name="saeHB.zinb"; version="0.1.0"; sha256="1gqb6xwfyz171md058m0kva2pj6hir09p784jwch2i1m9mvzinma"; depends=[coda rjags stringr]; }; saeME = derive2 { name="saeME"; version="1.2.4"; sha256="02yf5rf2kavwl3icfnsjg0kxmifrcc7v4j5jsfrfa8ssfbwcivhn"; depends=[ClusterR dplyr expm MASS]; }; saeRobust = derive2 { name="saeRobust"; version="0.2.0"; sha256="1bdfrsm59xwkga0kxl3r5n83mhhkyzj7gplrgx26gyflashyd1zc"; depends=[aoos assertthat ggplot2 magrittr MASS Matrix memoise modules pbapply Rcpp RcppArmadillo spdep]; }; saeSim = derive2 { name="saeSim"; version="0.11.0"; sha256="0s0zcls4j3cx7wbvi0l3q4c3b0f9x9i2wcqnz4gzwyqik6pcfaic"; depends=[dplyr functional ggplot2 MASS parallelMap spdep tibble]; }; saeeb = derive2 { name="saeeb"; version="0.1.0"; sha256="04vjxmnqcgqcamgjd9qq1dbx0msm40mnn94jjy9pzvsj2gsbws39"; depends=[COUNT MASS]; }; saekernel = derive2 { name="saekernel"; version="0.1.1"; sha256="0zk124kkxrwr3bliy01d3ag4r0flnjg4z3lmm5wmq3w0r4gwgy4f"; depends=[]; }; - saemix = derive2 { name="saemix"; version="2.4"; sha256="0w79n28xvkf2iw0vm9bw5dhxlp54bzm1lwl7q2hw356c2gmbpwjh"; depends=[]; }; + saemix = derive2 { name="saemix"; version="3.0"; sha256="17ax2cvlk69y8f00xgbdibycxng45kx175b518sdlkrm49pdxm7h"; depends=[ggplot2 gridExtra npde rlang]; }; saery = derive2 { name="saery"; version="1.0"; sha256="09x1v627llqbpiwkh1wr0z7gsndfdrjzag2hprhq1adbzh05k47z"; depends=[]; }; safeBinaryRegression = derive2 { name="safeBinaryRegression"; version="0.1-3"; sha256="1g68r6pp5l41rbgyfqgcha1gpsisnl0ybdmdqr4ylr43f61dpgvd"; depends=[lpSolveAPI]; }; safejoin = derive2 { name="safejoin"; version="0.1.0"; sha256="0qvra505g7cay3nhq6yqrddb7sw3kx50y8jhgvxi47rxdc3alzba"; depends=[dplyr glue]; }; @@ -16068,10 +16135,9 @@ in with self; { safetyData = derive2 { name="safetyData"; version="1.0.0"; sha256="1spa1wh1z8cqsz8vrkj3abny0xs3qp8d80dla8d031d70hvfkdjc"; depends=[]; }; safetyGraphics = derive2 { name="safetyGraphics"; version="2.0.0"; sha256="1y1qj8vhq3z3g4ij2qkc5cpwc5zknmjnp3kpkbcr9cywjrdpa5pq"; depends=[datamods dplyr DT htmlwidgets jsonlite magrittr purrr rclipboard rlang safetyCharts safetyData shiny shinyjs sortable stringr yaml]; }; sageR = derive2 { name="sageR"; version="0.3.0"; sha256="093qxwbkf8cqc3zjad232987qq2155faj8w2qplwxzvg881f0yi0"; depends=[ggplot2]; }; + sahpm = derive2 { name="sahpm"; version="1.0.1"; sha256="1grhfxpqx9dyvqd2v91im3jgki2k3abcaal2ix9pcdzz93fc9xlw"; depends=[mvtnorm]; }; sail = derive2 { name="sail"; version="0.1.0"; sha256="1wrh2dam5lblascqd8gl76jks72ys1amz84c6p08y8ykdmn2saq1"; depends=[gglasso glmnet]; }; - salbm = derive2 { name="salbm"; version="1.0"; sha256="06nizpphyn5q292b2kbsjax0ljw3340n655qwiyp8lvi2zcnl6jy"; depends=[randomForestSRC]; }; - salem = derive2 { name="salem"; version="0.2.0"; sha256="1pk27d57bmds0jvnvwai2scjy798lb7w6lb84yxl4ccgyn1ldh45"; depends=[]; }; - salesforcer = derive2 { name="salesforcer"; version="1.0.0"; sha256="12gc77d6kg7yb9hvbwibahslka8xfqzmwim4q6nkiyq9b0x5wliv"; depends=[anytime base64enc curl data_table dplyr httr jsonlite lifecycle lubridate mime purrr readr rlang rlist tibble vctrs XML xml2 zip]; }; + salesforcer = derive2 { name="salesforcer"; version="1.0.1"; sha256="19z4q5k0k1c1s2piqjg0z6nrwabap016nbx3jpf51lvmh5lp8ycf"; depends=[anytime base64enc curl data_table dplyr httr jsonlite lifecycle lubridate mime purrr readr rlang rlist tibble vctrs XML xml2 zip]; }; salso = derive2 { name="salso"; version="0.3.0"; sha256="05nsnhbb5w69064ddmdkpvx7nw2gbd2l446b89myllw0jzaycza3"; depends=[]; }; salty = derive2 { name="salty"; version="0.1.0"; sha256="1dxq62yrkv416fy09l03slc7ci6mnwiyvjlsxhbqnj8yjy3kbhr6"; depends=[assertthat purrr stringr]; }; sambia = derive2 { name="sambia"; version="0.1.0"; sha256="15yz5lrjav5bs8m52crg3l43xmi4gf7wydji76p181ssyg43z2ln"; depends=[dplyr e1071 FNN mvtnorm pROC ranger smotefamily]; }; @@ -16095,9 +16161,9 @@ in with self; { sams = derive2 { name="sams"; version="0.4.2"; sha256="0k67vdjwnp7ljll87vjqb80axbcfgm05rgw5vadzn67dgghkqd0j"; depends=[]; }; samurais = derive2 { name="samurais"; version="0.1.0"; sha256="0s00hd3ax4r662n8iqmd9i56sgyjxbgc59la7qvh3jwcnzcvmgz9"; depends=[MASS Rcpp RcppArmadillo]; }; sand = derive2 { name="sand"; version="2.0.0"; sha256="0a8skj1wi1n9zlm7jb5cix1i4ssdzfpj4ym2854ala9jy6qj7g7n"; depends=[igraph igraphdata]; }; - sandbox = derive2 { name="sandbox"; version="0.2.0"; sha256="1xwz8bddl9zf75d5xxvyvnljm6x45dwsf7lsks0fw7h5h97cv3xq"; depends=[RLumModel]; }; + sandbox = derive2 { name="sandbox"; version="0.2.1"; sha256="0k86dgfjg7ib79cl6nwxv1g9i15pk501kd8ynlaj3mijpnhgvbal"; depends=[RLumModel]; }; sandwich = derive2 { name="sandwich"; version="3.0-1"; sha256="12aa5083k3sfrfq1jy3l94wffss9h0rga8j71jy3n8pkhiq4nn7n"; depends=[zoo]; }; - sandwichr = derive2 { name="sandwichr"; version="1.0.0"; sha256="1hrkj0c8vhvg1kdg9vkakdc9k63p6dj50075s6z1pmh96d96zags"; depends=[caret dplyr geodetector ggplot2 gridExtra lwgeom sf]; }; + sandwichr = derive2 { name="sandwichr"; version="1.0.1"; sha256="114k981kxkf3a8kvzaciimkksnh1g5cyj2ams278r09vi3ic59ia"; depends=[caret dplyr geodetector ggplot2 gridExtra lwgeom sf]; }; sanic = derive2 { name="sanic"; version="0.0.1"; sha256="05fd7jpi7cf9klfh6dqf8wklrjh5q1b3xqddxhdihcsqvcqhg48l"; depends=[Matrix Rcpp RcppEigen]; }; sanitizers = derive2 { name="sanitizers"; version="0.1.0"; sha256="1c1831fnv1nzpq8nw9krgf9fm8v54w0gvcn4443b6jghnnbhn2n6"; depends=[]; }; sanityTracker = derive2 { name="sanityTracker"; version="0.1.0"; sha256="0y041x840sg5c05ksljb1y4xag1cib19q5ygp443k13ryfbcgs9k"; depends=[checkmate data_table]; }; @@ -16108,17 +16174,17 @@ in with self; { santoku = derive2 { name="santoku"; version="0.6.0"; sha256="1kwyc9c8fhfxr6kh9wkrw1ywqx5hjrp0dfvl97qzcly0g28432fs"; depends=[assertthat lifecycle Rcpp vctrs]; }; sanzo = derive2 { name="sanzo"; version="0.1.0"; sha256="1fqsx2mgjsy6vjvsp2avi2i5cw7cjs2p53l1z6hb3bzid3067s87"; depends=[]; }; saotd = derive2 { name="saotd"; version="0.3.0"; sha256="11ql731w3rc4spmd2ii52r49sxymxkf7wj2ngdvb8pcs4idar059"; depends=[dplyr ggplot2 ggraph igraph ldatuning lubridate magrittr reshape2 rtweet scales stringr tidyr tidytext topicmodels widyr]; }; - sapa = derive2 { name="sapa"; version="2.0-3"; sha256="0kj681rd4c2lvqr926lb6f4qwp281x5274dg6vbk8pf5y7s0qlpc"; depends=[ifultools splus2R]; }; sapevom = derive2 { name="sapevom"; version="0.2.0"; sha256="0vq4rx85pdjc0wjxjf7wj8j5qs3cb20hwhlc2ypbgrlw7zkcp1z4"; depends=[]; }; sapfluxnetr = derive2 { name="sapfluxnetr"; version="0.1.3"; sha256="06w3wm8m55ak1zxdyqq01ymgvyw71hk2m1vv378dppjxib7kvh3z"; depends=[assertthat dplyr furrr ggplot2 glue lubridate magrittr purrr rlang stringr tibble tidyr]; }; saqgetr = derive2 { name="saqgetr"; version="0.2.21"; sha256="0s7mmc8gqx89697wkv369x6sp3d1wha4q2zkkwikh835i3alx4zd"; depends=[dplyr httr lubridate magrittr purrr readr stringr tidyr]; }; - sarima = derive2 { name="sarima"; version="0.8.6"; sha256="0xkqw7fjj1dc02m3k2v2dgnlrhrhnwxgdjwyfirpicrbbv522xhh"; depends=[FitAR FitARMA Formula lagged ltsa numDeriv PolynomF Rcpp RcppArmadillo Rdpack]; }; - sarp_snowprofile = derive2 { name="sarp.snowprofile"; version="1.0.0"; sha256="02g7d5kilfkhqxm02jkhkraqbamxaj1qzzi150k6m55d5bfy4wih"; depends=[data_table xml2]; }; - sarp_snowprofile_alignment = derive2 { name="sarp.snowprofile.alignment"; version="1.0.2"; sha256="1yh4ybnscjzps28ncqd46xzv88fjcn4bhcx6rwz8kl1m253c4wpl"; depends=[dtw sarp_snowprofile shiny]; }; + sara4r = derive2 { name="sara4r"; version="0.0.9"; sha256="1vfaz4fs0yayf01w0smsnviwhvjz10krfagp4vhy4lmdcs99s00h"; depends=[raster rgdal sp tcltk2]; }; + sarima = derive2 { name="sarima"; version="0.9"; sha256="1wh84vg25vkr23ghfjfirsp0yj5537cybn2p623s18fypcfivlns"; depends=[Formula lagged ltsa numDeriv PolynomF Rcpp RcppArmadillo Rdpack]; }; + sarp_snowprofile = derive2 { name="sarp.snowprofile"; version="1.2.1"; sha256="1nz9ldc6a2x4a934xkyd3q2rim2bbcvhs3ks1m08q5qdcv1w0hiq"; depends=[data_table xml2]; }; + sarp_snowprofile_alignment = derive2 { name="sarp.snowprofile.alignment"; version="1.1.4"; sha256="0p3acphlc90d8kh0yyvc754vb5xvgzncw6819phzx11c63xmyqk9"; depends=[data_table dtw sarp_snowprofile shiny]; }; sars = derive2 { name="sars"; version="1.3.5"; sha256="07jaagf3q8x4iwjh1avy5vzv9y62ipnjd43acbw0hizh983qlq3r"; depends=[AICcmodavg cli crayon doParallel foreach nortest numDeriv]; }; sarsop = derive2 { name="sarsop"; version="0.6.9"; sha256="1rjpgicgy9vfi9q2vldrbbakybmazal5gh79p2kysnzhcr76v3z5"; depends=[BH digest Matrix processx xml2]; }; sas7bdat = derive2 { name="sas7bdat"; version="0.5"; sha256="0qxlapb6wdhzpwlmzlhscy3av7va3h6gkzsppn4sx5q960310an3"; depends=[]; }; - sasLM = derive2 { name="sasLM"; version="0.6.5"; sha256="1l9fwvzc91v12np0vxj276fqx3lhmf895ih9c1vq5x6ddy0f6rp3"; depends=[mvtnorm]; }; + sasLM = derive2 { name="sasLM"; version="0.6.6"; sha256="04gmh6sakxl2dgslyfqm7pixyjngvnkhw1xpp9n67fv62rjs8vai"; depends=[mvtnorm]; }; sasMap = derive2 { name="sasMap"; version="1.0.0"; sha256="11vhhxhakqm1gsb3p4s4966sapmrqfyw79zfppbx5lnqi3xr0ngn"; depends=[readr stringi stringr]; }; sasfunclust = derive2 { name="sasfunclust"; version="1.0.0"; sha256="1ba7g3rxyq5h806na6bsdvh6mw6hydgcf3740qkfd4d5fx7m0mq4"; depends=[fda MASS Matrix matrixcalc mclust Rcpp RcppArmadillo]; }; sass = derive2 { name="sass"; version="0.4.0"; sha256="0axw358bbk3vxsqg3wq0bz3xigasa6af8fxvi2ga8hli4cawl1kx"; depends=[fs htmltools R6 rappdirs rlang]; }; @@ -16153,7 +16219,7 @@ in with self; { scITD = derive2 { name="scITD"; version="1.0.1"; sha256="0x20yiwafalsfgxcmbia05vrfp7bpvwkgxgrdrxjpzhs07q527wk"; depends=[circlize ComplexHeatmap dplyr edgeR fgsea ggplot2 ggpubr ica Matrix mgcv msigdbr NMF RColorBrewer Rcpp RcppArmadillo RcppProgress reshape2 Rmisc rTensor sccore sva]; }; scImmuneGraph = derive2 { name="scImmuneGraph"; version="1.1.3"; sha256="0mvajasskcl4v0bjwzvkqjdicxb0329nxk93ich7qr37wfcp2n1n"; depends=[BiocStyle cowplot dplyr easypackages forcats ggplot2 gtools plyr purrr RColorBrewer readr scales stringr tibble tidyr tidyverse]; }; scLink = derive2 { name="scLink"; version="1.0.1"; sha256="0gcwx8kfik1lv949r9d9rqqnvrfkr4bj5cj2i9h1r7l1b76kna74"; depends=[glasso]; }; - scMappR = derive2 { name="scMappR"; version="1.0.7"; sha256="08ifrdmr4ws4z6aq75j84sain8q55ax6h1gzqqnphyw593yh9918"; depends=[ADAPTS downloader ggplot2 gProfileR gprofiler2 GSVA limSolve pbapply pcaMethods pheatmap reshape Seurat]; }; + scMappR = derive2 { name="scMappR"; version="1.0.9"; sha256="1b2jrbqy9dcvv9ng7mz8xxggqc5iy4n0h59xksin3m9gvpvsc0sw"; depends=[ADAPTS downloader ggplot2 gProfileR gprofiler2 GSVA limSolve pbapply pcaMethods pheatmap reshape Seurat]; }; scModels = derive2 { name="scModels"; version="1.0.2"; sha256="02nn8nv77fgmskx5zsa34ij9lzq9jiv8w2vmw5863v55khzvfs53"; depends=[gamlss_dist Rcpp]; }; scPOP = derive2 { name="scPOP"; version="0.1.0"; sha256="0bi9dmqj9cd8f09qmfl3d65922xn3j3jipxi6615jbk6bz67kkh9"; depends=[cluster Matrix RANN Rcpp RcppArmadillo]; }; scRNAstat = derive2 { name="scRNAstat"; version="0.1.1"; sha256="0yv5np7jafmygg77bwisrha5y2rdb1va906ngzs4zc8mvxr0dvlm"; depends=[clustree dplyr ggplot2 magrittr Matrix patchwork Seurat stringr]; }; @@ -16177,7 +16243,7 @@ in with self; { scatr = derive2 { name="scatr"; version="1.0.1"; sha256="1c2z722i7d7qflh4mzb8kkix5i22wph98kwz2p98x2mhaml8802d"; depends=[cowplot ggplot2 ggridges ggstance jmvcore R6]; }; scatterD3 = derive2 { name="scatterD3"; version="1.0.1"; sha256="187jq1y5va5npsmpkfyi6mhgynq956590q4z8v1ibadsrcldw34m"; depends=[digest ellipse htmlwidgets]; }; scatterPlotMatrix = derive2 { name="scatterPlotMatrix"; version="0.1.0"; sha256="1xs1rzi6j3yrj4j4yjhlj24nkxdnc4xgpwrdv9p0bzwc4gcarw1j"; depends=[htmlwidgets]; }; - scattermore = derive2 { name="scattermore"; version="0.7"; sha256="18nzlprmphkvjg946h10h2qq0wbkmv2526p8di6k2xl4gccq0qpk"; depends=[ggplot2 scales]; }; + scattermore = derive2 { name="scattermore"; version="0.8"; sha256="1rgqm7r1k7j3h2y4i6d1a2y8fzivfcbmr7dj9d367c0w4vc77pfv"; depends=[ggplot2 scales]; }; scatterpie = derive2 { name="scatterpie"; version="0.1.7"; sha256="1pmspv8a7k20zyd5xvmav2k9mnjrkfhdij3rr9k504zyki8hfy1z"; depends=[ggforce ggfun ggplot2 rlang tidyr]; }; scatterplot3d = derive2 { name="scatterplot3d"; version="0.3-41"; sha256="152xqz9c70qab86mpgng049gxsg5f4fpf1m8dh93fb9v1avjd0sc"; depends=[]; }; scbursts = derive2 { name="scbursts"; version="1.6"; sha256="09yxnq6m35xmp0priavjnh0bdcwkr5hhy7j33cz13xwkrd1cgw5j"; depends=[readxl tibble]; }; @@ -16213,6 +16279,7 @@ in with self; { scoringTools = derive2 { name="scoringTools"; version="0.1.2"; sha256="11bxmpqiqqkjyvmyxlnzz7j64jmy1pjw06128vvydmqhjxxyawjh"; depends=[discretization dplyr magrittr sqldf]; }; scoringutils = derive2 { name="scoringutils"; version="0.1.7.2"; sha256="1njdvy6fzw20xb13mpdqczvap88jfxxnid31nmrkq9yzjdigjv2c"; depends=[data_table forcats ggplot2 goftest scoringRules]; }; scout = derive2 { name="scout"; version="1.0.4"; sha256="0vr497g7g1xhf75cwjbjsns2fvdzy86iibbf5w0g2xylw82s4lh2"; depends=[glasso]; }; + scpi = derive2 { name="scpi"; version="0.1"; sha256="06h8sqqhrja8m9ps8snwzm3zyp6iysdki9n47sv4xw0dixj7v5mp"; depends=[abind CVXR doRNG doSNOW dplyr ECOSolveR fastDummies foreach ggplot2 magrittr Matrix nloptr purrr Qtools rlang stringr tibble tidyr]; }; scpm = derive2 { name="scpm"; version="2.0.0"; sha256="1ib46m3i50annp90n2ih4qdxabxik4ngg9j0a5hgspsvk1i4hrvp"; depends=[interp lattice MASS Matrix mvtnorm RandomFields rgl]; }; scqe = derive2 { name="scqe"; version="1.0.0"; sha256="1113zbc2jyq03fh8l1h6yidf25hh5dcqrk6wkk9flqwnbrvfkwrr"; depends=[AER ggplot2]; }; scraEP = derive2 { name="scraEP"; version="1.2"; sha256="1qkfd4bp3sd3xrh9bdaqwmmvx7f9rvjcch6hi2p387ky04ywwqn4"; depends=[data_table rvest XML xml2]; }; @@ -16220,9 +16287,9 @@ in with self; { scrappy = derive2 { name="scrappy"; version="0.0.1"; sha256="0dckq2pdqabnv5cinfqgbrjxp55x4z81lp8xh4yhyb2cnz9gdsqy"; depends=[magrittr rvest xml2]; }; scrime = derive2 { name="scrime"; version="1.3.5"; sha256="0y2mh9fsffjf3i15bafpasa17z99c1s75r8g6h4hgcwfgpjx75sx"; depends=[]; }; scriptName = derive2 { name="scriptName"; version="1.0.1"; sha256="1rd3qj7c7pg454a5mxhr64g4kp15cqf5lf8lbsh9x88llvkjci5v"; depends=[purrr rlang]; }; - scriptests = derive2 { name="scriptests"; version="1.0-16"; sha256="11l145gvzkxqwbzw976rq94krly1p4lahqw051dwaacarq4hnrdg"; depends=[]; }; scriptexec = derive2 { name="scriptexec"; version="0.3.1"; sha256="0k10x0npdga1nmchzz9xxv0qijnq2n9pb49z1g06bmva1z8wb4wg"; depends=[]; }; scriptuRs = derive2 { name="scriptuRs"; version="0.1.0"; sha256="1wbvfqcc0raazhdc6pyp93q859ilxfz9rz338p3sb7fjyxvparbl"; depends=[]; }; + scrm = derive2 { name="scrm"; version="1.7.4-0"; sha256="1kn6f0ypkl50jvnxz9sc6nyb0cdcnaccgka984jfsniky16f6sn9"; depends=[Rcpp]; }; scrobbler = derive2 { name="scrobbler"; version="1.0.2"; sha256="14nnqcjrcc5xcdn2swwj0j2jsw5maayd9ba06s6d5i88png2xhv5"; depends=[httr jsonlite]; }; scrollrevealR = derive2 { name="scrollrevealR"; version="0.2.0"; sha256="0k8ffapwxpb25wphm76arma095hrh3wf0gpkx1z6g4rplahf4jxa"; depends=[glue htmltools]; }; scrypt = derive2 { name="scrypt"; version="0.1.3"; sha256="14iblgbp9v2by8fjbrpsd59iknp5babcz7j3yv1yxxzcwyb6wrrm"; depends=[Rcpp]; }; @@ -16237,7 +16304,7 @@ in with self; { sdafilter = derive2 { name="sdafilter"; version="1.0.0"; sha256="0y692j25pln46dp6xvaq17fkym0461yqfa6rv5avfw2b240k8jiq"; depends=[glasso glmnet huge POET]; }; sdamr = derive2 { name="sdamr"; version="0.1.0"; sha256="19mgdipp2fwv0c8g5fc02j4vdnc6v4x0204570swv8mkb2r2acqy"; depends=[car dplyr ggplot2]; }; sdat = derive2 { name="sdat"; version="1.1"; sha256="1mxijw2yfblqjvqqb2xrzhfn9c872i1q9ggw24xicvr2fk4lvjw6"; depends=[]; }; - sdcHierarchies = derive2 { name="sdcHierarchies"; version="0.19.1"; sha256="128mxm7iphg7c5jxpfakdnldc995gdcrlnfaxddw7csvzv547dwa"; depends=[cli data_table jsonlite Rcpp rlang shiny shinyjs shinythemes shinyTree]; }; + sdcHierarchies = derive2 { name="sdcHierarchies"; version="0.19.2"; sha256="198bk08qz5xr07pkc9yj3n9rzgv5ssijhg9fwhhrg35rf7jni1s8"; depends=[cli data_table jsonlite Rcpp rlang shiny shinyjs shinythemes shinyTree]; }; sdcLog = derive2 { name="sdcLog"; version="0.4.0"; sha256="0rph0jha8x5mqzcpad3px89ppqbxccsx896mhpxw9pxrpk82aiig"; depends=[broom checkmate crayon data_table mathjaxr]; }; sdcMicro = derive2 { name="sdcMicro"; version="5.6.1"; sha256="12maw34ibsa2fpdxy4ww8nbsllfvcjvf5idg4m4z0fjsbmd7li51"; depends=[car carData cluster data_table DT e1071 ggplot2 haven knitr MASS prettydoc Rcpp rhandsontable rmarkdown robustbase shiny shinyBS VIM xtable]; }; sdcSpatial = derive2 { name="sdcSpatial"; version="0.1.1"; sha256="1szv2nb758k3x5scxml2ns11fi99rlmd11r3fhzy3dgylf0m0xnm"; depends=[raster]; }; @@ -16248,7 +16315,7 @@ in with self; { sdetorus = derive2 { name="sdetorus"; version="0.1.8"; sha256="1bf622k9szas3bfxz9f82dn28l1hdqxzpvgqwvzygy9vp2gi4gyp"; depends=[colorRamps mvtnorm Rcpp RcppArmadillo]; }; sdm = derive2 { name="sdm"; version="1.1-8"; sha256="130zkhhq1l99r16dii21i87wphb4n10xq70rgimm4x0q7zn0jv5y"; depends=[raster sp]; }; sdmApp = derive2 { name="sdmApp"; version="0.0.2"; sha256="1rfzy3bbdya7amyr43dhhv4cvmrxcan0fv167ldpbf0m9snqrnrx"; depends=[raster shiny sp]; }; - sdmpredictors = derive2 { name="sdmpredictors"; version="0.2.11"; sha256="1fazdcxmgwa3m3nd010i3rprnh05ydwh152vvbship7c73czwcs1"; depends=[R_utils raster rgdal]; }; + sdmpredictors = derive2 { name="sdmpredictors"; version="0.2.12"; sha256="1j3z16kdc256k5dn596k3y4dbbp3sjfxbh87a2jiplddq4a8bgff"; depends=[R_utils raster rgdal]; }; sdmvspecies = derive2 { name="sdmvspecies"; version="0.3.2"; sha256="19avkag13ij1k65vqhmvcy8j50j8vrgw4mjc49x8i63w3d4z1wxh"; depends=[psych raster]; }; sdpdth = derive2 { name="sdpdth"; version="0.2"; sha256="1yn8fsjxpbagargf3mv0p23vsgnl64dxfkggrzvfp0ylxsx8nnvc"; depends=[Matrix matrixcalc rCMA Rcpp RcppArmadillo rJava]; }; sdprisk = derive2 { name="sdprisk"; version="1.1-6"; sha256="061x78irryc5phd8bv9cs2mfgiajgwmr85ryp1r47anadydb2haa"; depends=[numDeriv PolynomF rootSolve]; }; @@ -16261,14 +16328,14 @@ in with self; { searchConsoleR = derive2 { name="searchConsoleR"; version="0.4.0"; sha256="1ffg5359pbwylw265wbahwl3hy1b0qqv4al71v5r8lgfircibn0j"; depends=[googleAuthR stringr]; }; searcher = derive2 { name="searcher"; version="0.0.6"; sha256="03q9nq5zkj344swq3ppliz6dhwaddls8xv633s6brccmrcgdaivm"; depends=[]; }; seas = derive2 { name="seas"; version="0.5-2"; sha256="0hn4d5dc01zyycd7l3vj1sx6bq668n7fzffw9ypaa5l20fizs0ay"; depends=[MASS]; }; - season = derive2 { name="season"; version="0.3.13"; sha256="0sn10vxdqvds162i4d7jg6if15h9p8fxia27ihlr4kfyp9113g98"; depends=[ggplot2 MASS survival]; }; + season = derive2 { name="season"; version="0.3.14"; sha256="1hdn0ji631ga0wadd4w0vph0s59dpcq1q36g0aii07jd0mc1wifv"; depends=[ggplot2 MASS survival]; }; seasonal = derive2 { name="seasonal"; version="1.8.4"; sha256="1mqlck752d9hmzmkmjw9qq7g9kkrwbzglsm7sx0xc03qbm5zxd3k"; depends=[x13binary]; }; seasonalclumped = derive2 { name="seasonalclumped"; version="0.3.2"; sha256="0a9ryds9l00dw6pr9s6r6fzrby53zz63idjywh127a4ga48jwnq3"; depends=[ggplot2 gridExtra magrittr TTR]; }; seasonalityPlot = derive2 { name="seasonalityPlot"; version="0.99.3"; sha256="12z15qlvyj9rrljzqbhgh384x53qqylwmzias4bhx0k3hq2qvsrj"; depends=[dygraphs htmltools magrittr plotrix quantmod zoo]; }; seasonalview = derive2 { name="seasonalview"; version="0.3"; sha256="1l705yc7ssldsfckbgnvd95sh3zzhpkmf1rr6ar2s60s3wsyly4n"; depends=[dygraphs htmlwidgets openxlsx seasonal shiny shinydashboard xtable xts zoo]; }; seastests = derive2 { name="seastests"; version="0.15.4"; sha256="1xy2hacd57v75y5snhn4al7bi71wr994jy6m2sdr6qzzsd5pbgpc"; depends=[forecast xts zoo]; }; seawaveQ = derive2 { name="seawaveQ"; version="2.0.2"; sha256="1x4vvassal1lwb9xnwisrhlx2maaqxl84h7klfy8yg9x80fdrhsw"; depends=[lubridate plyr reshape2 rms survival]; }; - secr = derive2 { name="secr"; version="4.5.1"; sha256="1vbxivrk3v6hkh56x8cp7n3aw30zb9mchaixxq06qihnjmn6prx5"; depends=[abind BH MASS mgcv nlme raster Rcpp RcppEigen RcppNumerical RcppParallel sp stringr]; }; + secr = derive2 { name="secr"; version="4.5.3"; sha256="1rp36brvpalzria61az514f3drinjxql0c12jgjb71m01vcjqfad"; depends=[abind BH MASS mgcv nlme raster Rcpp RcppEigen RcppNumerical RcppParallel sf stringr terra]; }; secrdesign = derive2 { name="secrdesign"; version="2.6.0"; sha256="0iaby8qpik6g5060m3cykrqslj8cl1ddg0hsqy6vjgy6gg9r6ach"; depends=[abind secr]; }; secret = derive2 { name="secret"; version="1.1.0"; sha256="063gpyc2s2l6zw1j8b8ppzsv9kjsf0s77s5wcn7ipmwkj8qr2g4b"; depends=[assertthat curl jsonlite openssl rprojroot]; }; secrettext = derive2 { name="secrettext"; version="0.1.0"; sha256="129v524yyb464mcij7hvzv05cxliaz5nm7v30g9g9ppskcdqhsx2"; depends=[dplyr magrittr rlang stringr testthat tidyr]; }; @@ -16276,7 +16343,7 @@ in with self; { secsse = derive2 { name="secsse"; version="2.1.7"; sha256="0cad1flym8bhra11chc16ylfa3i0nhi9jyy6r4nacwh6qpbbavjg"; depends=[ape apTreeshape DDD deSolve doParallel foreach geiger phylobase]; }; secuTrialR = derive2 { name="secuTrialR"; version="1.0.9"; sha256="0g84jrh42kx3w1m6spw80rwx7vzjf7x1qabqap4h6ayrczacxq4r"; depends=[dplyr haven lubridate magrittr purrr readr readxl rlang stringr tibble tidyr]; }; secure = derive2 { name="secure"; version="0.6"; sha256="1i0csl90w4qvhpnrxwrdhxzlmjw7hn30py36r41cd28igycz2bw3"; depends=[MASS Rcpp RcppArmadillo]; }; - see = derive2 { name="see"; version="0.6.8"; sha256="0q7hfb94smpyq9wsf48j04hx05nkaijf875fwwz8lfhkfvd8z4kj"; depends=[bayestestR datawizard effectsize ggplot2 ggridges insight parameters rlang]; }; + see = derive2 { name="see"; version="0.6.9"; sha256="0r42dm3zwjszfn6sga6ljgczaksgnn4n92y7bm3qysvcfnywvqq4"; depends=[bayestestR datawizard effectsize ggplot2 insight parameters]; }; seeclickfixr = derive2 { name="seeclickfixr"; version="1.1.0"; sha256="1agsqq2msrqrssffc6liyjjs6nqm90xy2inlcjbkdac5dhinjc4n"; depends=[jsonlite RCurl]; }; seecolor = derive2 { name="seecolor"; version="0.1.0"; sha256="1ijxyys8pwlm99ynmv86cgn8pzz1ivaxzh3rq1akzv17nz93jv61"; depends=[crayon dplyr fansi ggplot2 magrittr purrr rstudioapi stringr]; }; seedCCA = derive2 { name="seedCCA"; version="3.0"; sha256="076pkv083dp71m6ifjzx9spfwmc1625r9d72spf0vhf8pwwsha4v"; depends=[CCA corpcor]; }; @@ -16285,7 +16352,7 @@ in with self; { seedreg = derive2 { name="seedreg"; version="1.0.2"; sha256="16nr2hkwc0vfkd76ky592r1ymlmpakvxsmammih3fii9d4l8mlab"; depends=[boot car crayon drc emmeans ggplot2 hnp multcomp multcompView stringr]; }; seeds = derive2 { name="seeds"; version="0.9.1"; sha256="0adk7y5ripg78bwkdgnlfwq9w9h6mlpdrikgbnn5z8az2qahc0in"; depends=[callr coda Deriv deSolve dplyr ggplot2 Hmisc MASS matrixStats mvtnorm pracma R_utils Ryacas statmod tidyr]; }; seer = derive2 { name="seer"; version="1.1.7"; sha256="018621hywk8p3p210dn7ikll5nl188xb8smxsqzkzrf9wc886s3y"; depends=[dplyr forecast forecTheta furrr future magrittr MASS purrr randomForest stringr tibble tsfeatures urca]; }; - seewave = derive2 { name="seewave"; version="2.1.8"; sha256="1szcvryvl4kb3av2pcvl14bz6whl7xrq4wb1ck6w7lfc4mrlirhh"; depends=[tuneR]; }; + seewave = derive2 { name="seewave"; version="2.2.0"; sha256="0bi1l47l3846c18k6h2vrv0xp9xh00n544a578jrndahzrj1hfwl"; depends=[tuneR]; }; seg = derive2 { name="seg"; version="0.5-7"; sha256="165hl55vzyf3jqlykqji37p2syzhc8dxdjxd4wwr562qnlymzszx"; depends=[sp splancs]; }; segMGarch = derive2 { name="segMGarch"; version="1.2"; sha256="0chw41h25jka9wa3rf3d8dq2ym47379jflv33q6qxaak8xy1kmd9"; depends=[corpcor doParallel fGarch foreach iterators mvtnorm Rcpp RcppArmadillo]; }; segRDA = derive2 { name="segRDA"; version="1.0.2"; sha256="0az27z4pppyz5slckwmgk6qqix710m1s96drlq4fh8bqn2qmz812"; depends=[vegan]; }; @@ -16305,10 +16372,10 @@ in with self; { selectMeta = derive2 { name="selectMeta"; version="1.0.8"; sha256="0i0wzx5ggd60y26lnn4qk4n8h27ahll9732026ppks1djx14cdy0"; depends=[DEoptim]; }; selectapref = derive2 { name="selectapref"; version="0.1.2"; sha256="0njibljh3hiqdn4wdb031bdg1bh3xpixgczbi5i01gaavybsq4cc"; depends=[]; }; selection_index = derive2 { name="selection.index"; version="1.1.3"; sha256="0zvb6wr7ga5618v8rwdvc2bk7gw19gn3kpfn584cfac9j933m62v"; depends=[]; }; - selectiongain = derive2 { name="selectiongain"; version="2.0.591"; sha256="11gd9xdn3jl3mg3c9ykw8bqvcxhihn19iqsy8dl8bacijjv84bva"; depends=[mvtnorm]; }; + selectiongain = derive2 { name="selectiongain"; version="2.0.707"; sha256="17d1m3fmkxfrk0lx4pyz5cwkfdqnj9hca2w4pi406441lk8y4dsn"; depends=[mvtnorm]; }; selectiveInference = derive2 { name="selectiveInference"; version="1.2.5"; sha256="07kzpvdmflca1sriqfzn20f84fx2b9kwwiqm91lqjpx854bsx5kh"; depends=[adaptMCMC glmnet intervals MASS Rcpp survival]; }; selectr = derive2 { name="selectr"; version="0.4-2"; sha256="09y1n3iy297g49xlpl7xrjpwgnm57pskx5991lyfcpizbz8ax22m"; depends=[R6 stringr]; }; - selectspm = derive2 { name="selectspm"; version="0.3"; sha256="1gl7wi4wfy9rnyralf9051v5yhr27fcw45a8ib4ashcwrd5wcs9j"; depends=[ecespa spatstat spatstat_core spatstat_geom]; }; + selectspm = derive2 { name="selectspm"; version="0.4"; sha256="0yw5xwhv8kw3sizhq0r3wak8a32chkjil3lmxac8c6g9k47q8yrq"; depends=[ecespa spatstat spatstat_core spatstat_geom spatstat_random]; }; seleniumPipes = derive2 { name="seleniumPipes"; version="0.3.7"; sha256="1krpzh2gy3yl07c2n1d8q21xjc2qcv5ac1kv7212710bxkdyfad6"; depends=[httr jsonlite magrittr whisker xml2]; }; selfea = derive2 { name="selfea"; version="1.0.1"; sha256="0zyxbd5vg8nhigill3ndcvavzbb9sbh5bz6yrdsvzy8i5gzpspvx"; depends=[ggplot2 MASS plyr pwr]; }; selfingTree = derive2 { name="selfingTree"; version="0.2"; sha256="18ylxmg2ms4ccgm4ahzfl65x614wiq5id7zazjjz5y75h8gs7gzj"; depends=[foreach]; }; @@ -16316,7 +16383,7 @@ in with self; { sem = derive2 { name="sem"; version="3.1-13"; sha256="0r9g4j0w6q4qy9jl9gkjkihml4109ymg3y6zmhyg806q19qryx07"; depends=[boot MASS mi]; }; semEff = derive2 { name="semEff"; version="0.6.0"; sha256="0w919y49kl2vq9psnjn03cwwp99myip5cbvm6jmkkjiikx8iikh0"; depends=[boot gsl lme4]; }; semPLS = derive2 { name="semPLS"; version="1.0-10"; sha256="0q5linjyv5npkw4grx3vq58iq2q1grf06ikivhkg8w7rvb7pqn6b"; depends=[lattice]; }; - semPlot = derive2 { name="semPlot"; version="1.1.2"; sha256="0l1v9yi1pv59iwfknw4dh9qskk5y8r347jq1vq13gnfd3bmd71xr"; depends=[colorspace corpcor igraph lavaan lisrelToR OpenMx plyr qgraph regsem rockchalk sem XML]; }; + semPlot = derive2 { name="semPlot"; version="1.1.5"; sha256="0d7v9yqc9nhx3hdrp444w1ah66zai3lg5y778m85r7ngh1prxlvc"; depends=[colorspace corpcor igraph lavaan lisrelToR OpenMx plyr qgraph rockchalk sem XML]; }; semPower = derive2 { name="semPower"; version="1.2.0"; sha256="1y3j6b3ab19fqxzqrrssjcj7f0za0vkwq97s7qs6hwj9yfsg1nas"; depends=[]; }; semTable = derive2 { name="semTable"; version="1.8"; sha256="0qr420rnz59q8arf6x05iy1zyh7pv31ldi2rsw1j2a00fbpp4ndf"; depends=[kutils lavaan plyr stationery xtable]; }; semTools = derive2 { name="semTools"; version="0.5-5"; sha256="1dpsn43ifvfy5v8w2fqdy54yclmy0d3qlzix67lflr2r7isq7y6x"; depends=[lavaan pbivnorm]; }; @@ -16354,6 +16421,7 @@ in with self; { sensory = derive2 { name="sensory"; version="1.1"; sha256="1zd0ajrymxi6gygcq9fqgwgy0g6c3cqz53x0k5m0ihbmh11rc7s7"; depends=[gtools MASS Matrix]; }; senstrat = derive2 { name="senstrat"; version="1.0.3"; sha256="0j6mb55v5ivqvk8nn8fjlzrbdgj6csa58yc6gy1g07m7gk2qz2np"; depends=[BiasedUrn MASS]; }; sentencepiece = derive2 { name="sentencepiece"; version="0.2.1"; sha256="0mwmgnkmahlik8nl14pkzi351jv9c00iylj7f5h6wkjbrizkdd34"; depends=[Rcpp]; }; + sentiment_ai = derive2 { name="sentiment.ai"; version="0.1.0"; sha256="1i7lihj66wgl1fciqm3kii3plflicjrrpzv8q899wcmky2whfgmf"; depends=[data_table jsonlite reticulate roperators tensorflow tfhub xgboost]; }; sentimentr = derive2 { name="sentimentr"; version="2.9.0"; sha256="0i0lg2fl079wjv30lpqcxhx62miqakb9kzwwhrr4c18kl0bxbaav"; depends=[data_table ggplot2 lexicon stringi syuzhet textclean textshape]; }; sentometrics = derive2 { name="sentometrics"; version="1.0.0"; sha256="06qvwfgshr70n1qgf2zqjvycwwrak8d5hfyn3v5k2qzkfaxkihmm"; depends=[caret data_table foreach ggplot2 glmnet ISOweek quanteda Rcpp RcppArmadillo RcppParallel RcppRoll stringi]; }; sentryR = derive2 { name="sentryR"; version="1.1.0"; sha256="0kz81dbxg4zyns829cjhjm2g88pxzaaxdk7c8qabvl0zgqys2chy"; depends=[httr jsonlite stringr tibble uuid]; }; @@ -16366,7 +16434,7 @@ in with self; { seqR = derive2 { name="seqR"; version="1.0.1"; sha256="0a80w7pyf2hbyzlm010xj3xv1dzkdc2w9s48hhfbsig88f497ki7"; depends=[Matrix Rcpp RcppParallel rlang slam]; }; seqRFLP = derive2 { name="seqRFLP"; version="1.0.1"; sha256="1i98hm8wgwr8b6hd237y2i9i0xgn35w4n2rxy4lqc5zq71gkwkvk"; depends=[]; }; seqest = derive2 { name="seqest"; version="1.0.1"; sha256="06zk87n26305m0hy6lg7v3bpxmsqvinwkvw3dvmzkqp5jdkhwikb"; depends=[foreach geepack MASS mvtnorm nnet Rcpp RcppArmadillo VGAM]; }; - seqgendiff = derive2 { name="seqgendiff"; version="1.2.2"; sha256="0vrmh4h2g4hvx8ix5jyc4bhp8vpr00fcqsfbf9r0808jqnlwgcnr"; depends=[assertthat cate clue irlba matchingR pdist sva]; }; + seqgendiff = derive2 { name="seqgendiff"; version="1.2.3"; sha256="0vyrs4i3q3lyqx0b1as7h2rm3s5kbapq6jxzag8dwhf0ch7yz8gv"; depends=[assertthat cate clue irlba matchingR pdist sva]; }; seqhandbook = derive2 { name="seqhandbook"; version="0.1.0"; sha256="0zncpjabazci92wzw126i491669gidkyiw7zjp7iw23m6jaf71l4"; depends=[TraMineR]; }; seqinr = derive2 { name="seqinr"; version="4.2-8"; sha256="1xz9spln6s9mcwpgcv1m4jymn4gnl1bb6vh90bphqcn0vvlk8jsq"; depends=[ade4 segmented]; }; seqmagick = derive2 { name="seqmagick"; version="0.1.5"; sha256="0h1vdsx88k3mpajfv0cgswk2s1560zm6y776b4dqrdkvkcgdbb3g"; depends=[Biostrings magrittr]; }; @@ -16378,10 +16446,10 @@ in with self; { sequenza = derive2 { name="sequenza"; version="3.0.0"; sha256="13l16lacdcf7fn96yj3xqxap0l19ma9ppkxxx5qk9f5abbvdk303"; depends=[copynumber iotools pbapply readr seqminer squash]; }; sergeant = derive2 { name="sergeant"; version="0.9.1"; sha256="0mgrrlny1qfddznyc34awh8vkbjnyskbyqrxszdhsm2c5wgp2nwh"; depends=[bit64 DBI dbplyr dplyr htmltools httr jsonlite magrittr purrr readr scales stringi tibble]; }; serial = derive2 { name="serial"; version="3.0"; sha256="1y1gj0lcdn5apiv6c6arks6pqhsbvnrfym6n2izjarx2c27ijrjj"; depends=[]; }; - seriation = derive2 { name="seriation"; version="1.3.1"; sha256="08c37n3xxc4n4vbkw38k3l3hdlmck8drqpl6z274vkgi2sqv8qyf"; depends=[cluster colorspace gclus MASS qap registry TSP]; }; + seriation = derive2 { name="seriation"; version="1.3.3"; sha256="1f6hxbrixqaj4vh4svff5pz9ny9h10snrrigk2r9c59amhkgih80"; depends=[cluster colorspace gclus MASS qap registry TSP]; }; serieslcb = derive2 { name="serieslcb"; version="0.4.0"; sha256="1ip4k2xzg06hwsni62ai1whs1zzhwlf94507inpfpqz3jmmafrhq"; depends=[gplots shiny]; }; seroincidence = derive2 { name="seroincidence"; version="2.0.0"; sha256="0sam4y7w6prswz0izkm1a9v2k5rv7z22g1ajy15n9xix9aml5ms4"; depends=[]; }; - serp = derive2 { name="serp"; version="0.2.3"; sha256="0fbhcn10vvyg29sg5i39i004vks4in21br1gm8zhlx9sqmw7m0l0"; depends=[crayon ordinal]; }; + serp = derive2 { name="serp"; version="0.2.4"; sha256="0hd25rxknj636ssy2289xjvq5fflp2p561yb9w0siqihfc7cfjpc"; depends=[crayon ordinal]; }; serpstatr = derive2 { name="serpstatr"; version="0.1.0"; sha256="1myxw3dh3mkai803dnfdd1zyr2mjzsd2pw00l1fwmmbdplqg9q20"; depends=[httr]; }; serrsBayes = derive2 { name="serrsBayes"; version="0.5-0"; sha256="1w8fs9k4zhy0hwkm30dvi360n28cl2gn9vdqaak64g0nlvb9jy1w"; depends=[Matrix Rcpp RcppEigen truncnorm]; }; servosphereR = derive2 { name="servosphereR"; version="0.1.1"; sha256="0m1fjd3f1s2ss54xmcrm3p0c33hhi2dj0vim790g4y0mw2aicc8l"; depends=[data_table dplyr magrittr purrr rlang]; }; @@ -16392,12 +16460,12 @@ in with self; { set = derive2 { name="set"; version="1.2"; sha256="0f36dp9k0nxp1amsd7ybwgbv0vxvgd1kns7cbfsbsh0kljxyplzp"; depends=[do]; }; set6 = derive2 { name="set6"; version="0.2.4"; sha256="06swz60p73a7m7rvsv1545hsr2chkk2w2hmnfwkwfz4hrbdxm709"; depends=[checkmate ooplah R6 Rcpp]; }; setRNG = derive2 { name="setRNG"; version="2013.9-1"; sha256="02198cikj769yc32v8m2qrv5c01l2fxmx61l77m5ysm0hab3j6hs"; depends=[]; }; - sets = derive2 { name="sets"; version="1.0-20"; sha256="1mkmqi3n1lh01k47yvkr0dlf4imqdi6d6bglx9bvrjmg816p4jr3"; depends=[]; }; + sets = derive2 { name="sets"; version="1.0-21"; sha256="1h1a03b1850kh5hd3gxbspx2nxqxvk2gb0wm0s60b70qb6zg0csp"; depends=[]; }; setter = derive2 { name="setter"; version="0.0-1"; sha256="10fwrx8yysp99rrkbnn3rbz79vyzr2h3p7zxxlqapw1k2lllp0r5"; depends=[assertive_base]; }; settings = derive2 { name="settings"; version="0.2.7"; sha256="1i9ij5k8p2v9gxr48vas8hj337mbyx9c4ywv9bbdwkz6kzah46k5"; depends=[]; }; sever = derive2 { name="sever"; version="0.0.7"; sha256="10jckf6q31blsl1yhs5f1mx7b8sm8sqb86iakcvaslf651ijx81m"; depends=[cli htmltools shiny]; }; severity = derive2 { name="severity"; version="2.0"; sha256="1mp19y2pn7nl9m8xfljc515kk5dirv0r2kypazpmd956lcivziqq"; depends=[]; }; - sf = derive2 { name="sf"; version="1.0-6"; sha256="1rmqip00nkfhda3i3a42q12k7xbsrz1p6fb2wynx5m9cxdgil33b"; depends=[classInt DBI magrittr Rcpp s2 units]; }; + sf = derive2 { name="sf"; version="1.0-7"; sha256="0lsl4rh4lbv386hxlsnnwsjb5x1n9d3z0ckjmxakmmrqjjmiywyh"; depends=[classInt DBI magrittr Rcpp s2 units]; }; sfa = derive2 { name="sfa"; version="1.0-1"; sha256="1acqxgydf8j5csdkx0yf169x3yaa31r0ccdrqarh6vj1hacm89ad"; depends=[]; }; sfaR = derive2 { name="sfaR"; version="0.1.0"; sha256="1lgazgj6xfg0syspw6wzmd4xyczydhdgghpaf9kgrqvqfkaqcf8p"; depends=[dplyr emdbook fBasics Formula gsl marqLevAlg MASS maxLik moments nleqslv numDeriv primes qrng randtoolbox trustOptim ucminf]; }; sfadv = derive2 { name="sfadv"; version="1.0.1"; sha256="1rfpm6km5pckwhqgpvidm6qsj5sjdaqqj5b0sgvpslivfa4c80cr"; depends=[gmm minpack_lm]; }; @@ -16406,8 +16474,9 @@ in with self; { sfcr = derive2 { name="sfcr"; version="0.2.1"; sha256="05ip1z6rh0k7az0y7nwp9c6rv1s53i0i698yfhx46lfnhzz87anf"; depends=[dplyr expm forcats igraph kableExtra magrittr purrr Rcpp RcppArmadillo Rdpack rlang rootSolve stringr tibble tidyr tidyselect vctrs]; }; sfdct = derive2 { name="sfdct"; version="0.1.0"; sha256="0p3ipp6x8vnsi94078n098yk9wglnawvzh19imcgk2c1l5lazwgf"; depends=[dplyr RTriangle sf sp tibble]; }; sfheaders = derive2 { name="sfheaders"; version="0.4.0"; sha256="0ig02nszrs6fkjkrkqibp23n4a8qr4i09yz7l741yjd0308ddg46"; depends=[geometries Rcpp]; }; + sfhotspot = derive2 { name="sfhotspot"; version="0.2.0"; sha256="1fy0y3nshfi6951qfplmsnrhlw24hwapifqwrffigbk5cq7ls9d3"; depends=[rlang sf SpatialKDE spdep tibble]; }; sfinx = derive2 { name="sfinx"; version="1.7.99"; sha256="14v47y00qwvc2s0vzjw19hwn85nzj8lna539c75qq6zkn6kir6va"; depends=[]; }; - sfnetworks = derive2 { name="sfnetworks"; version="0.5.4"; sha256="15sxnwg62zwanl6rb1sl5a1l5gvhbvra6ildfi7wp87v99vpss4i"; depends=[crayon dplyr igraph lwgeom rlang sf sfheaders tibble tidygraph units]; }; + sfnetworks = derive2 { name="sfnetworks"; version="0.5.5"; sha256="17lj828ds16v6splx84s8vykvinm3iz0whmx34cr08b7aadw0yqf"; depends=[crayon dplyr igraph lwgeom rlang sf sfheaders tibble tidygraph units]; }; sfo = derive2 { name="sfo"; version="0.1.1"; sha256="0ja0kyrr6vqwk9fj1hq9bvfkak2vgav0hlqpgn4sa9h9j1s8r4js"; depends=[]; }; sfsmisc = derive2 { name="sfsmisc"; version="1.1-12"; sha256="10h76pgzcxv1y5pkmba9607lvjrsyq62sq63s2n7ry7z5151h4lv"; depends=[]; }; sft = derive2 { name="sft"; version="2.2-1"; sha256="0fxz64ba58n6ghfqsgq64n1c7qkvi8c3lsa86732mil9w71yxw33"; depends=[fda SuppDists]; }; @@ -16419,7 +16488,7 @@ in with self; { sgeostat = derive2 { name="sgeostat"; version="1.0-27"; sha256="1iq9p2jk8bpv1h853a1l91d5c5dxnhkk3cmkd01siqqvj04hv4vb"; depends=[]; }; sglOptim = derive2 { name="sglOptim"; version="1.3.8"; sha256="15bkkvgp9v9vsp65wps48g3c2fa0fj1025hbrziywq14j7wayyjr"; depends=[BH doParallel foreach Matrix Rcpp RcppArmadillo RcppProgress]; }; sglasso = derive2 { name="sglasso"; version="1.2.4"; sha256="0sdarn39857405ndmqyka5ksvwczb5ifl5aap96wpm625iz2a1pi"; depends=[igraph Matrix]; }; - sglg = derive2 { name="sglg"; version="0.2.0"; sha256="0xhqilg1adn0758fypbbblxxc2fgf2g5j47003y3zc7v79hp93rz"; depends=[AdequacyModel Formula ggplot2 gridExtra moments plot3D pracma progress Rcpp survival TeachingSampling]; }; + sglg = derive2 { name="sglg"; version="0.2.1"; sha256="1smvzlbcn7gjfb2jnzqdhda607f88kh14wapidc3vhz4l0wnn9xs"; depends=[AdequacyModel Formula ggplot2 gridExtra magrittr moments plot3D plotly pracma progress Rcpp survival TeachingSampling]; }; sglr = derive2 { name="sglr"; version="0.7"; sha256="11gjbvq51xq7xbmpziyzwqfzf4avyxj2wpiz0kp4vfdj3v7p4fp9"; depends=[ggplot2 shiny]; }; sgmcmc = derive2 { name="sgmcmc"; version="0.2.5"; sha256="0lq79c7i6bklh8c63wx3k6h9mk8s1abbr0hc41drcm96bbbg0aal"; depends=[reticulate tensorflow]; }; sgmodel = derive2 { name="sgmodel"; version="0.1.1"; sha256="1i13vp91i8s61ylsyg0iij1sfclwif7v91slr2srl8ddz6lm23nx"; depends=[ggplot2 ramify Rtauchen]; }; @@ -16440,7 +16509,7 @@ in with self; { shapes = derive2 { name="shapes"; version="1.2.6"; sha256="1p9fr95zk3q2v277c5ksb0nh26mcpzwjzjb2lmag51z6hck8cb66"; depends=[MASS minpack_lm rgl scatterplot3d]; }; shapper = derive2 { name="shapper"; version="0.1.3"; sha256="1jaj9j894md45611gdrz05n0kfakawf7vlcc3zxhwdh3f7kwz4lp"; depends=[DALEX ggplot2 reticulate]; }; shapr = derive2 { name="shapr"; version="0.2.0"; sha256="1zzg58m38rkqsynczy5jwz97ph3s85aa975ffi4i5vml82zlhc4y"; depends=[condMVNorm data_table Matrix mvnfast Rcpp RcppArmadillo]; }; - shar = derive2 { name="shar"; version="1.3.1"; sha256="10h8qk1syflz9grzzdkbxjl9ym22yimva14xx0m1xcbi20nd6a05"; depends=[classInt raster spatstat_core spatstat_geom]; }; + shar = derive2 { name="shar"; version="1.3.2"; sha256="1fks9gpm01q5phicgv1znl2d7j63w3m0w63xd1a38qypvqd9gqxp"; depends=[classInt raster spatstat_core spatstat_geom spatstat_random]; }; sharpData = derive2 { name="sharpData"; version="1.4"; sha256="1pnza52wqczjds4vp2fy9ky41y7lyj9ywam11nsr0mpv63jglnc5"; depends=[KernSmooth quadprog]; }; sharpPen = derive2 { name="sharpPen"; version="1.7"; sha256="1nhmxfyrzmm6qgwrlfc046lm9n8n5r62ym44956zg2z1m2vhnysf"; depends=[glmnet KernSmooth MASS Matrix np]; }; sharpeRratio = derive2 { name="sharpeRratio"; version="1.4.2"; sha256="1l0ix779kzci647v4irxs0j83zwfchd51k8576ivis7cr5f1a9v6"; depends=[ghyp Rcpp]; }; @@ -16471,7 +16540,7 @@ in with self; { shinyEffects = derive2 { name="shinyEffects"; version="0.2.0"; sha256="1ajar09hmrk7vcw89wkgvkz2yl0cfnkz915b57w1lmbvpxzgsq3i"; depends=[htmltools shiny]; }; shinyFeedback = derive2 { name="shinyFeedback"; version="0.4.0"; sha256="1xfznq2d4wkk0b0y4k25rwg4d3bhn3gxlkf3chfqk44f4rgril11"; depends=[fontawesome htmltools jsonlite shiny]; }; shinyFiles = derive2 { name="shinyFiles"; version="0.9.1"; sha256="0f8dfdiar376lx0979ccyghgx5rhr08v5z3z60asrrjsxlq4cs85"; depends=[fs htmltools jsonlite shiny tibble]; }; - shinyGovstyle = derive2 { name="shinyGovstyle"; version="0.0.7"; sha256="08lslxzmlzyrphaf0i3pqj21q2iqqskmlr7dnhm4yrfvm6jllglz"; depends=[htmltools jsonlite shiny shinyjs]; }; + shinyGovstyle = derive2 { name="shinyGovstyle"; version="0.0.8"; sha256="1czyz51k0xm62b9bzcsygslm2nd3fnmll4wjxwimlngy00rnjnng"; depends=[htmltools jsonlite shiny shinyjs]; }; shinyHeatmaply = derive2 { name="shinyHeatmaply"; version="0.2.0"; sha256="1n7c7dvvb9kqay2phcf0bkwi990x1cjl7js6pq05xx7rli5bc5h4"; depends=[dplyr heatmaply htmltools plotly readxl rmarkdown shiny xtable]; }; shinyIRT = derive2 { name="shinyIRT"; version="0.1"; sha256="01x7nhjs1dx2ldwznhbavc5vzqhgkn73xg395vlf2hgzbxa2ydvj"; depends=[irtoys magrittr mirt psych readxl shiny shinycssloaders shinydashboard]; }; shinyKGode = derive2 { name="shinyKGode"; version="1.0.5"; sha256="004zwz4kqfijzvvwkq8v1gi25w1wrdlg8230g93w36gbi6cl2vk1"; depends=[ggplot2 gridExtra KGode mvtnorm pracma pspline reshape2 shiny shinyjs XML]; }; @@ -16501,7 +16570,7 @@ in with self; { shinyauthr = derive2 { name="shinyauthr"; version="1.0.0"; sha256="0apaqjkxpr96kx9indl0pifk5y75gdx5npfcvxfg5k2crpx9vmxk"; depends=[dplyr glue rlang shiny shinyjs sodium]; }; shinybootstrap2 = derive2 { name="shinybootstrap2"; version="0.2.1"; sha256="17634l3swlvgj1sv56nvrpgd6rqv7y7qjq0gygljbrgpwmfj198c"; depends=[htmltools jsonlite shiny]; }; shinybrms = derive2 { name="shinybrms"; version="1.6.0"; sha256="0dbj0sl65sgg293knrarj7rc5fc8xvhdh601b2srs0zqp6vjzhbn"; depends=[brms rlang rstan shiny]; }; - shinybusy = derive2 { name="shinybusy"; version="0.2.2"; sha256="06vfkv382xcpjh30i7d4ym4vyravadp5vjsvrnw4npy0302pdmzl"; depends=[htmltools htmlwidgets jsonlite shiny]; }; + shinybusy = derive2 { name="shinybusy"; version="0.3.0"; sha256="07cx7g55sq36i2fpnf2fz6d4a4dqys00j8fbkfj9kg61gfban5s3"; depends=[htmltools htmlwidgets jsonlite shiny]; }; shinycssloaders = derive2 { name="shinycssloaders"; version="1.0.0"; sha256="0r3xm273lhdhzbs2mkgw1m2kwb7z1dh1pzya8yxy5vacda1l2ikl"; depends=[digest glue shiny]; }; shinycustomloader = derive2 { name="shinycustomloader"; version="0.9.0"; sha256="1klx71vr26g0gjf6hbiia1qidqii5d467i1sdjvlrg1hxdcggqff"; depends=[glue shiny]; }; shinydashboard = derive2 { name="shinydashboard"; version="0.7.2"; sha256="0hrqkwlpb8rnmp5j74p134g4c4cl16icmwc2ip6k1634fa2y8vm5"; depends=[htmltools promises shiny]; }; @@ -16532,23 +16601,24 @@ in with self; { shinyreforms = derive2 { name="shinyreforms"; version="0.0.1"; sha256="1g1blc57c6zkca0m52bqkw8jwgpplabns07x1cwkk46dmv6sgqci"; depends=[htmltools R6 shiny]; }; shinyscreenshot = derive2 { name="shinyscreenshot"; version="0.2.0"; sha256="01vm2wc0r3j20hj65q9f0wgffj7r5q2cg5p5mywh1p2rkslgikk3"; depends=[base64enc jsonlite shiny uuid]; }; shinyservicebot = derive2 { name="shinyservicebot"; version="0.1.0"; sha256="18xbggiai6ssyl3q0nqhnszxb7zlbffaw0iy3r7vbzswzqx522la"; depends=[digest htmltools htmlwidgets shiny]; }; - shinystan = derive2 { name="shinystan"; version="2.5.0"; sha256="18alf5kiqw7y2l6m5nxxizwc2znsf9frxfsqhvgcad8hld9cbya5"; depends=[bayesplot colourpicker DT dygraphs ggplot2 gridExtra gtools markdown reshape2 rsconnect rstan shiny shinyjs shinythemes threejs xtable xts]; }; + shinystan = derive2 { name="shinystan"; version="2.6.0"; sha256="0afm703zriyqprz1zvypir80lq2ylfff3qvj5i7p9n365mm8b150"; depends=[bayesplot colourpicker DT dygraphs ggplot2 gridExtra gtools markdown reshape2 rstan shiny shinyjs shinythemes threejs xtable xts]; }; shinysurveys = derive2 { name="shinysurveys"; version="0.2.0"; sha256="01bj0g8r71jng03psw9dcjann78divy2xr5yn6y1pa82d96s46b5"; depends=[htmltools jsonlite sass shiny]; }; shinytest = derive2 { name="shinytest"; version="1.5.1"; sha256="0pjcdkyv1f94fxzpbc9m02kdv8v6jh6dmxsc1kmr22qcj1cbql8s"; depends=[assertthat callr crayon debugme digest htmlwidgets httpuv httr jsonlite parsedate pingr R6 rematch rlang rstudioapi shiny testthat webdriver withr]; }; shinythemes = derive2 { name="shinythemes"; version="1.2.0"; sha256="0qr9bfxw8afxns44i2j4msignf6g5qb2nzpay2lpv343rrlqbmip"; depends=[shiny]; }; shinytitle = derive2 { name="shinytitle"; version="0.1.0"; sha256="1k05s2fmqvz3drnqkxcpxvvmn0sisdqivg7i4x5c6649b97rsbsx"; depends=[shiny]; }; shinytoastr = derive2 { name="shinytoastr"; version="2.1.1"; sha256="01j2z4gf1wxblrjayykwxdr2s8394i7k930x8g4hmrj7c9pv264n"; depends=[shiny]; }; shinyvalidate = derive2 { name="shinyvalidate"; version="0.1.1"; sha256="04sl1z8i3d2pndxzylc80m435jwjik2yl5g82gaylhz7kj3fqxn4"; depends=[glue htmltools rlang shiny]; }; - shipunov = derive2 { name="shipunov"; version="1.16"; sha256="15960ngphpnljp8nvxcwrvfibs5pj7yygxbd5zlj9nkyaifl8ngs"; depends=[PBSmapping]; }; + shipunov = derive2 { name="shipunov"; version="1.17"; sha256="15gakqapgi9yl9i31nqw1h6p89qphmlyn9dfhmf2ps3ki4ijq44k"; depends=[PBSmapping]; }; shock = derive2 { name="shock"; version="1.0"; sha256="11m52al591xjznl62q1waxsg5m1a1afmd0yqcc5zsjlrplykg4lp"; depends=[capushe GGMselect glasso igraph mvtnorm]; }; shopifyr = derive2 { name="shopifyr"; version="1.0.0"; sha256="05hih1v5vvr7vmwarizsdx8517g74s96fdsz3klcz3g12idx1nqn"; depends=[curl jsonlite R6]; }; shortcuts = derive2 { name="shortcuts"; version="1.4.0"; sha256="0y77napfz1v3s667cmyn8357xg5lncbw1hc3hm5kra6nalhq1jps"; depends=[rstudioapi]; }; shorts = derive2 { name="shorts"; version="1.1.6"; sha256="1krjyi9xd7gys5259kf3q2paqwvyhqzici0qbi98754vlbnq53sq"; depends=[ggplot2 LambertW nlme tidyr]; }; shotGroups = derive2 { name="shotGroups"; version="0.8.1"; sha256="17lmdyimz4wsv284520qwb3f2ah7lg2w22rqswkqg0c46sy46gzm"; depends=[boot coin CompQuadForm KernSmooth robustbase]; }; showimage = derive2 { name="showimage"; version="1.0.0"; sha256="1c0x3iqjdjsz3cdhc02b3qm2pwxjr1q2k87jwvxj9lnzzw81f1pl"; depends=[png]; }; - showtext = derive2 { name="showtext"; version="0.9-4"; sha256="1gvj32wrs5q31bmg5dy6n85d0igm3jhkldhdv8kscw0pfrk89y36"; depends=[showtextdb sysfonts]; }; + showtext = derive2 { name="showtext"; version="0.9-5"; sha256="1larnqxn9nanbqiadm35ah5hh89xrzm4fdj9pfc93zzzhlfrvhb3"; depends=[showtextdb sysfonts]; }; showtextdb = derive2 { name="showtextdb"; version="3.0"; sha256="0hlnc3fhgrdkd46n7hb6id0gg1v0bf8s4679nrr7rchyp455szq2"; depends=[sysfonts]; }; shp2graph = derive2 { name="shp2graph"; version="0-5"; sha256="1l9mg98hkb0bvr5dzd2p26g8mw5hqjxrym2gmbm10kyapvccfk56"; depends=[igraph maptools sp]; }; + shrink = derive2 { name="shrink"; version="1.2.2"; sha256="0d80a0qqrsb9ybzqvg3m6a9r16ky7hqchq0hjvj8ipk430mmxdjm"; depends=[MASS mfp rms survival]; }; shrinkDSM = derive2 { name="shrinkDSM"; version="0.1.0"; sha256="01yvs1shsp7npfm9w1caprb1x8w42zlzswc2fk9y6q340i51kfzm"; depends=[coda Rcpp RcppArmadillo RcppProgress shrinkTVP stochvol]; }; shrinkTVP = derive2 { name="shrinkTVP"; version="2.0.5"; sha256="1qzk53l6n3a58ypqdisf2cj1nvgri2fvy0nz72wpvqnfsj3xcswz"; depends=[coda GIGrvg Rcpp RcppArmadillo RcppProgress stochvol zoo]; }; shuffle = derive2 { name="shuffle"; version="1.0.1"; sha256="0aqb11h340picx7z2jg3k46l3pr6fkknlpyzc0z89hhrc90pss48"; depends=[]; }; @@ -16568,7 +16638,6 @@ in with self; { sift = derive2 { name="sift"; version="0.1.0"; sha256="030vv2rha5d20045bwsp6ihdcgiw9glnchyahpzwym3m6fnkg0y5"; depends=[cpp11 dplyr glue pastecs purrr rlang tibble tidyr tidyselect]; }; sig = derive2 { name="sig"; version="0.0-5"; sha256="084wwpj5mnmq4k98ijbv23z80sj4axadc7c6hn3917dazsaa6ngn"; depends=[]; }; sigInt = derive2 { name="sigInt"; version="0.2.0"; sha256="1y3qbfsynssam05q4947zqd0dkrpcnq5pla409i3xy511wv9702d"; depends=[Formula MASS maxLik pbivnorm randomForest stringr xtable]; }; - sigQC = derive2 { name="sigQC"; version="0.1.22"; sha256="17b16mjadmsbqbai90bvryydkfy9k5ww9i65a5ahy3bfjch851f2"; depends=[biclust circlize class cluster ComplexHeatmap fmsb gplots gridGraphics GSVA KernSmooth lattice MASS mclust moments nnet RankProd]; }; sigclust = derive2 { name="sigclust"; version="1.1.0"; sha256="0151v7lr4n4yyn93j0s06gzc9jh9xhdgvfw6kvpfy24jl6wdii7g"; depends=[]; }; sigmaNet = derive2 { name="sigmaNet"; version="1.1.0"; sha256="1i0xikwad9kiyrqxi1klkc4h4hyqfkxr388sw4mrx9pswfpbv3xr"; depends=[htmlwidgets igraph jsonlite RColorBrewer]; }; sigmajs = derive2 { name="sigmajs"; version="0.1.5"; sha256="1d26llpgnj687b8rwgbyhw88zakp334n4a9gabf72qwrg4awm1v5"; depends=[crosstalk dplyr htmltools htmlwidgets igraph jsonlite magrittr purrr scales shiny]; }; @@ -16578,7 +16647,7 @@ in with self; { signalHsmm = derive2 { name="signalHsmm"; version="1.5"; sha256="1d4v6cbvcbi8pb5zmn58s01h3jb0kv7yr7qvcnx4p2v82knvhik7"; depends=[Rcpp seqinr shiny]; }; signed_backbones = derive2 { name="signed.backbones"; version="0.91.5"; sha256="0xk8sncblzihqzqfpaq7158slvrb6ww3dc4v5di1m2bqwhykncwi"; depends=[reshape2]; }; signmedian_test = derive2 { name="signmedian.test"; version="1.5.1"; sha256="05n7a4h2bibv2r64cqschzhjnm204m2lm1yrwxvx17cwdp847hkm"; depends=[]; }; - signnet = derive2 { name="signnet"; version="0.7.1"; sha256="06mzscjaay0wib8mmnbcacj8zy84nx9p00i8gcpr4nklxfarib3w"; depends=[igraph Matrix Rcpp RcppArmadillo]; }; + signnet = derive2 { name="signnet"; version="0.8.0"; sha256="0iymm9crvppb7yrp163y5i605bl1mdw7bxzgr5s4zflhzf1njv4s"; depends=[igraph Matrix Rcpp RcppArmadillo]; }; signs = derive2 { name="signs"; version="0.1.2"; sha256="0dzf5pydvs93rvj6idw9l2asv1bxwz20df7qis2db84hfww2kc6m"; depends=[rlang scales]; }; sigora = derive2 { name="sigora"; version="3.1.1"; sha256="11abbvynyhbb7y7zndbkivb13yxj8l86nrn361mfv495g1d3ba8s"; depends=[slam]; }; sigr = derive2 { name="sigr"; version="1.1.4"; sha256="1gx1dmdi8wjqlhp7a9cp915z0n5hl9xsv2hwzdmk0ijbjgipn7fh"; depends=[wrapr]; }; @@ -16621,6 +16690,7 @@ in with self; { simml = derive2 { name="simml"; version="0.3.0"; sha256="18qrpxf4fsqirfxj4ldkmdyc6zp2px2bcad9j50ihb3r2a33ny3x"; depends=[mgcv]; }; simmr = derive2 { name="simmr"; version="0.4.5"; sha256="0kv3ip0yq3r2a9dglx0pkjvg5bkf9fg2x051dp6z0ld1c0f4p6ms"; depends=[bayesplot boot checkmate compositions ggplot2 MASS R2jags reshape2 viridis]; }; simode = derive2 { name="simode"; version="1.2.0"; sha256="0wlnd01xfdqvjfvmkhkj6nvkrnv5ghjv4md5nhaqsjc8bycawyl0"; depends=[deSolve pracma quadprog]; }; + simphony = derive2 { name="simphony"; version="1.0.0"; sha256="1r95wk526bc1frvcb11zx7hx3lrjvqw5wcwcv0j8mi4ylhhw9w9d"; depends=[data_table foreach]; }; simpleCache = derive2 { name="simpleCache"; version="0.4.2"; sha256="0zayq4n8cc0xgszckjvvf55ygy8hwywv161pp8pqi2k4z91rq4lz"; depends=[]; }; simpleFDR = derive2 { name="simpleFDR"; version="1.1"; sha256="09w7l8pb6kibzifwyqcgshlxjq2gn6s642i78939q00q0m9qvdbk"; depends=[dplyr tidyr]; }; simpleMH = derive2 { name="simpleMH"; version="0.1.0"; sha256="02arll0w39b4cz7gslka26lvjg90xy83kqiyvm4gxnsbw7s9hkyr"; depends=[mvtnorm]; }; @@ -16634,12 +16704,12 @@ in with self; { simplegraph = derive2 { name="simplegraph"; version="1.0.0"; sha256="1gcpbljp1fgaprxnmq23izf1h2x3p5dnxlylwqsnlcj50bvm46gq"; depends=[]; }; simplegraphdb = derive2 { name="simplegraphdb"; version="2021.03.10"; sha256="0573hrv23nimmf3d8dgdynii79h84a3mfr4xxk3cggxhsxpfmb2i"; depends=[DBI rjson RSQLite]; }; simplermarkdown = derive2 { name="simplermarkdown"; version="0.0.4"; sha256="069pgx5m22rdqa21lyn5zqm9ym3g7w6z1d2wjwms8b1f2cp6266g"; depends=[rjson]; }; - simplevis = derive2 { name="simplevis"; version="6.0.0"; sha256="09bhqql0a6dqzd9i2ay6f6fkk1rg266dvxnfj31v35rziq32550f"; depends=[dplyr forcats ggplot2 htmlwidgets leafem leaflet leafpop lifecycle lubridate magrittr plotly purrr rlang scales sf shiny snakecase stars stringr tidyr tidyselect viridis]; }; + simplevis = derive2 { name="simplevis"; version="6.2.0"; sha256="1w4ahwr7d8s2cfc3n8s8sqkk2gwnwzanqlx03csjbip7kq2lc5qa"; depends=[dplyr forcats ggplot2 htmlwidgets kimisc leafem leaflet leafpop lubridate magrittr plotly purrr rlang scales sf shiny snakecase stars stringr tidyr tidyselect viridis]; }; simplexreg = derive2 { name="simplexreg"; version="1.3"; sha256="1zkh00xbddhgz0qn0a5pj12n0hpx4f5kihpfj71x92pmxpzglcxh"; depends=[Formula plotrix]; }; simplextree = derive2 { name="simplextree"; version="1.0.1"; sha256="18jvzcz4fdsi17j7qdqpjvx6zygvlcvpziikb8qxskaib5180l08"; depends=[magrittr Rcpp]; }; - simpr = derive2 { name="simpr"; version="0.2.1"; sha256="070ps8sydj3pj738mfjs25bwb4lqgwmq6sm78lgv9w6v9p0jwbx1"; depends=[broom dplyr furrr generics magrittr purrr rlang tibble tidyr tidyselect]; }; + simpr = derive2 { name="simpr"; version="0.2.2"; sha256="19gc6fxjw4fxz9swf27qf2z5d2mwgcdcg2dyfyvvx3rkzn51bwia"; depends=[broom dplyr furrr generics magrittr purrr rlang tibble tidyr tidyselect]; }; simputation = derive2 { name="simputation"; version="0.2.7"; sha256="0jw0j57pgg06ix7yr01bbv314w2dh08idjvsa46s02xkqn37cb7q"; depends=[gower MASS rpart]; }; - simr = derive2 { name="simr"; version="1.0.5"; sha256="1j5w93iliykfnpxl9kzh1rp6d3iy26ksj3j7yjl348yvplh0iyjl"; depends=[binom car iterators lme4 pbkrtest plotrix plyr RLRsim stringr]; }; + simr = derive2 { name="simr"; version="1.0.6"; sha256="1q8ip54c5pc7pjf8127jpk56nr3f8rmwqdcrr84faj4lfbr27wqb"; depends=[binom car iterators lme4 lmerTest pbkrtest plotrix plyr RLRsim stringr]; }; simrec = derive2 { name="simrec"; version="1.0.0"; sha256="17zzbzgdisp5qh0vlbmkjf6a3axnpwj2kw03wymfbb3z557pbxlr"; depends=[]; }; simrel = derive2 { name="simrel"; version="2.1.0"; sha256="1knn8kw9m232agm4b3b0fc132frv5i7k8gxvmrcb1pnz62gsmg04"; depends=[FrF2 ggplot2 gridExtra jsonlite magrittr miniUI purrr reshape2 rlang rstudioapi scales sfsmisc shiny testthat tibble tidyr]; }; sims = derive2 { name="sims"; version="0.0.3"; sha256="0wsq8plbrmk4xrs8i3g3pqwp2xkhfh1pffva1bwyx44l1r5imzs2"; depends=[chk future_apply nlist yesno]; }; @@ -16662,9 +16732,10 @@ in with self; { singcar = derive2 { name="singcar"; version="0.1.3"; sha256="17f80cqkgcyvmaavpqia9z54h3yf5as3v294fsc09l3zshzvbzg6"; depends=[CholWishart MASS withr]; }; singleCellHaystack = derive2 { name="singleCellHaystack"; version="0.3.4"; sha256="08s31z15v4px3sfm2q2ips64qknahw04xhh6d5nmlsl65wbd143x"; depends=[ggplot2 Matrix reshape2]; }; sinib = derive2 { name="sinib"; version="1.0.0"; sha256="08x2a5hn41vcsai3r36w1kgzka4ks53pkp6dxn90bsqh40ydb0db"; depends=[]; }; - siplab = derive2 { name="siplab"; version="1.5"; sha256="1gfncsqgwj7ljm7cik6kmcqynzppqlqlq1f9qpmvzfpf6fd1ccxp"; depends=[spatstat]; }; + siplab = derive2 { name="siplab"; version="1.6"; sha256="149crdvw7sz7p4sz58n1ryvv3l0pm57wbvfd93xnljw7hwwq1dvk"; depends=[spatstat spatstat_geom]; }; siqr = derive2 { name="siqr"; version="0.8.1"; sha256="0yyb4abd7lghsb1qrw61zvbll3hs4dsldkvs3syrabwhxady8w43"; depends=[KernSmooth quantreg]; }; sirad = derive2 { name="sirad"; version="2.3-3"; sha256="0vhmk2fmq4797gj6c8803zw1ipmdxfvdfgi2bygzxbn5bqd4da2n"; depends=[raster zoo]; }; + siren = derive2 { name="siren"; version="1.0.1"; sha256="03hwrf40wp6jn6y6s3q0hgv4hnndrck2qb94c4jqj6lcwn673h9f"; depends=[EFA_MRFA lavaan psych]; }; sirt = derive2 { name="sirt"; version="3.11-21"; sha256="06lazl1navs7cpm4ql19y00h4m8yijf2mrjpvr4rsh16b157rssb"; depends=[CDM pbv Rcpp RcppArmadillo TAM]; }; sirus = derive2 { name="sirus"; version="0.3.2"; sha256="1j821vxy81x12yv229k334s8cwjl5fla2wvlhdz01rf688sv0hbs"; depends=[ggplot2 glmnet Matrix Rcpp RcppEigen ROCR]; }; sisVIVE = derive2 { name="sisVIVE"; version="1.4"; sha256="1vh53irxgk8ahw52cdqbbm89dvmzyf54izg4lm8a3v92k5p6nzwz"; depends=[lars]; }; @@ -16688,11 +16759,12 @@ in with self; { sjstats = derive2 { name="sjstats"; version="0.18.1"; sha256="1cv80yjnyh6qihxf57zivihhia20gibr5f03x8aspy6382wnwlka"; depends=[bayestestR broom dplyr effectsize emmeans insight lme4 magrittr MASS modelr parameters performance purrr rlang sjlabelled sjmisc tidyr]; }; skater = derive2 { name="skater"; version="0.1.1"; sha256="0cylcwxqc75a7fkyn7llwp0c7k35sfsbylxrjn0cpdnxbyf5xcx5"; depends=[corrr dplyr kinship2 magrittr purrr readr rlang tibble tidyr]; }; skda = derive2 { name="skda"; version="0.1"; sha256="0a6mksr1d0j3pd0kz4jb6yh466gvl4fkrvgvnlmvivpv6b2gqs3q"; depends=[]; }; - skedastic = derive2 { name="skedastic"; version="1.0.3"; sha256="0f6pq5mj3mbam13283z4zyw7zgkvsld5y7ak0ahby9gb0na1zyhm"; depends=[arrangements bazar berryFunctions boot broom CompQuadForm cubature data_table expm gmp Hmisc MASS mvtnorm pracma quantreg Rdpack Rmpfr]; }; + skedastic = derive2 { name="skedastic"; version="1.0.4"; sha256="07i9sgqc96h9ih8r1n9fvryyw8znpap1bpmvbm62sm3qcj7m856p"; depends=[arrangements bazar boot broom CompQuadForm cubature data_table expm gmp MASS mvtnorm pracma quantreg Rdpack Rmpfr]; }; skeletor = derive2 { name="skeletor"; version="1.0.4"; sha256="1jfbfbkjx8mdwamsrkhvcnyn470in702vgcyw3g2dbgs84gl29q8"; depends=[]; }; skellam = derive2 { name="skellam"; version="0.2.0"; sha256="0r5wbs5h7xc3k2vjxd4axwnxr9cmwm008fcyj1vyixkg8fa680gx"; depends=[]; }; sketch = derive2 { name="sketch"; version="1.1.17"; sha256="17lb4fnlwvdxgsm8iipcx4v6fn1vkf5wr9zwmm6m4p770651z116"; depends=[base64enc glue htmltools jsonlite magrittr purrr rlang rstudioapi shiny]; }; sketcher = derive2 { name="sketcher"; version="0.1.3"; sha256="011lx15whrdj5q5h33h9brkzbn2fnpm1nx9ip1v9xl5xfkbj7952"; depends=[downloader dplyr imager jpeg magrittr png readbitmap stringr]; }; + sketchy = derive2 { name="sketchy"; version="1.0.2"; sha256="0nvf87w3zcnly4b39rg8pa1651pk8zixkn6rj7y2hbf1qiyjwsqg"; depends=[crayon git2r knitr packrat stringi]; }; skewMLRM = derive2 { name="skewMLRM"; version="1.6"; sha256="16gr0haag0pqw7k7nvfqlc6s5i92lkpd0ghkgvlwgql8jzw7zmlk"; depends=[clusterGeneration doParallel foreach MASS matrixcalc moments mvtnorm]; }; skewlmm = derive2 { name="skewlmm"; version="1.0.0"; sha256="1z7rz520vmjqmnak2zgxnnj7yhg7k2phclx3ilvkwzn9v8pd224j"; depends=[dplyr furrr future ggplot2 ggrepel haven moments mvtnorm nlme numDeriv optimParallel purrr]; }; skewsamp = derive2 { name="skewsamp"; version="1.0.0"; sha256="1b41zjjnn7vphcrbvrvqx66jfd9fb8v22xmgql6wh26a2y81bman"; depends=[]; }; @@ -16779,7 +16851,7 @@ in with self; { smss = derive2 { name="smss"; version="1.0-2"; sha256="04lgfdcvnzpnpplyl62fy7slyiy8wkqpjjrzmclgqis3c9zkkncp"; depends=[]; }; smurf = derive2 { name="smurf"; version="1.1.2"; sha256="00q54pg42anilhcshhjvv277mkszbpzpkf1g7srs7cjd5skjvsaf"; depends=[catdata glmnet MASS Matrix mgcv RColorBrewer Rcpp RcppArmadillo speedglm]; }; smvgraph = derive2 { name="smvgraph"; version="0.1.2"; sha256="06pvnrhd3q913nxhk1icj11xkd1is3qi31b0kv6zbc0qkixn1ym7"; depends=[DescTools fmsb MASS shiny shinydashboard sortable]; }; - sn = derive2 { name="sn"; version="2.0.1"; sha256="1z58kwvq8igjm3biyyjdlhs2qq8hfjq5d9x0lzy80yk5hw08kcw6"; depends=[mnormt numDeriv quantreg]; }; + sn = derive2 { name="sn"; version="2.0.2"; sha256="140p1pl5sq0laxhcm16kbqm986hlhqj90gj3jccga491gh14jywm"; depends=[mnormt numDeriv quantreg]; }; sna = derive2 { name="sna"; version="2.6"; sha256="0ai0v4538d30m4wks5s3lch1yfmx1ml0nnrz7ihs097lv586a09s"; depends=[network statnet_common]; }; snahelper = derive2 { name="snahelper"; version="1.4.0"; sha256="1anfjlp8yqqvw53nyqd96zlvh1pjm9z2yqkrfgmlbhs4m273x9bl"; depends=[colourpicker DT formatR ggplot2 ggraph graphlayouts igraph miniUI rstudioapi shiny]; }; snakecase = derive2 { name="snakecase"; version="0.11.0"; sha256="1ky1x2cp5rd0ffd9m1fji9sq4z4jsrpxzg30brw8bb4ihfjj114r"; depends=[stringi stringr]; }; @@ -16854,10 +16926,10 @@ in with self; { sotkanet = derive2 { name="sotkanet"; version="0.9.79"; sha256="1d6g09rf7irk3d8hkm6ahp8zl6lj24jnipwvzr0njx2sqi3fwd4f"; depends=[curl httr jsonlite]; }; sotu = derive2 { name="sotu"; version="1.0.2"; sha256="0aqwkawaydsm91hz13msjg1a5llg7xmv6hxmfmsaganrl7iaym3c"; depends=[]; }; sound = derive2 { name="sound"; version="1.4.5"; sha256="1kbbb614d0fmj9l0yjiwf5yqnl7sby4xklp7qwp6rwjvq9bnm0ab"; depends=[]; }; - soundClass = derive2 { name="soundClass"; version="0.0.9"; sha256="1bcjh07pwjg6jdhzjhn0v4mc96dyhyf31rlg2ngr77lwsrfzdnz0"; depends=[DBI dbplyr dplyr generics htmltools keras magrittr RSQLite seewave shiny shinyBS shinyFiles shinyjs signal tuneR zoo]; }; + soundClass = derive2 { name="soundClass"; version="0.0.9.1"; sha256="1hjqp8pvi063wwimxvzwpzqkc175smlfcsn6z7iana25gypx0jip"; depends=[DBI dbplyr dplyr generics htmltools keras magrittr RSQLite seewave shiny shinyBS shinyFiles shinyjs signal tuneR zoo]; }; soundcorrs = derive2 { name="soundcorrs"; version="0.4.0"; sha256="1azvsv3bghlab8q24wbb6xwd5a4cydx1cagvhk8h0h5ib9957zab"; depends=[]; }; soundecology = derive2 { name="soundecology"; version="1.3.3"; sha256="16h6gbdlyav7wbfisdv1f2zsqhr45liidgj7qqk8giwjxgan8q97"; depends=[ineq oce pracma seewave tuneR vegan]; }; - soundgen = derive2 { name="soundgen"; version="2.5.0"; sha256="0shvrz37l65ka8yxqzynanz33wmiiagglnvgqy4ihs6x8yxx10qs"; depends=[doParallel dtw foreach mvtnorm phonTools reshape2 seewave shiny shinyBS shinyjs signal tuneR zoo]; }; + soundgen = derive2 { name="soundgen"; version="2.5.1"; sha256="1wzqlc1gnknpyixy0dv6nzgghqc1i2xd2bd688pfmfnqgmr2cm3r"; depends=[doParallel dtw foreach mvtnorm phonTools reshape2 seewave shiny shinyBS shinyjs signal tuneR zoo]; }; sourceR = derive2 { name="sourceR"; version="1.1.0"; sha256="09mikl6rkigx2bdnwqsgxwksz40lspq27hsrhlnfyz5yhs31ssda"; depends=[assertthat cluster dplyr gplots gtools R6 Rcpp reshape2 SPIn tensorA]; }; sourcetools = derive2 { name="sourcetools"; version="0.1.7"; sha256="1jnjir0q2dj724f1mjm6p5h77yzyx6xcqy9r2g7gmcxkxw349627"; depends=[]; }; sovereign = derive2 { name="sovereign"; version="1.2.1"; sha256="1v5cchwia8v9h4fpb506v6nikp5k042axmryjmqrgimaly8dk9nv"; depends=[broom dplyr furrr future ggplot2 gridExtra lmtest lubridate magrittr mclust purrr randomForest sandwich stringr strucchange tidyr xts zoo]; }; @@ -16877,6 +16949,7 @@ in with self; { spNNGP = derive2 { name="spNNGP"; version="0.1.6"; sha256="12ys92r2xpmnhy6hw8sldcz0y28gnxpwnj6sm5jc1lfyz7k1ww6f"; depends=[coda Formula RANN]; }; spNetwork = derive2 { name="spNetwork"; version="0.2.1"; sha256="0hmg68v5a7d1ixwj9nvh7kd948r7kspar6nd3yp02mgj495ps1z8"; depends=[BH cubature data_table future_apply ggplot2 igraph maptools progressr raster Rcpp RcppArmadillo RcppProgress Rdpack rgeos SearchTrees sp spdep]; }; spOccupancy = derive2 { name="spOccupancy"; version="0.2.1"; sha256="12fpi7ijk1qlhdq280r352aqlymmkis1nbfjbqqr9kkrl141zi56"; depends=[abind coda doParallel foreach lme4 RANN spBayes]; }; + spRingsteen = derive2 { name="spRingsteen"; version="0.0.1"; sha256="0dhrwnns06jqzqbc5mc7bjgs98xkcq591nm6scayxm34mqs3k47m"; depends=[]; }; spTDyn = derive2 { name="spTDyn"; version="2.0.1"; sha256="1wprn2adw4l5pkwkfzdpcr07jxgycx9kaf8w8mfv27nka5hacgqx"; depends=[coda sp spacetime spTimer]; }; spThin = derive2 { name="spThin"; version="0.2.0"; sha256="0j10j1cbbwp3baqm3b59rxlnd643mkx1mirlxpnr1ad2g7xpm69f"; depends=[fields knitr spam]; }; spTimer = derive2 { name="spTimer"; version="3.3.1"; sha256="0lf39n32ifsmbcf35h0g60xniw72mlrzvzax3k6kz5c5k1wszlba"; depends=[coda extraDistr sp spacetime]; }; @@ -16884,7 +16957,7 @@ in with self; { spaa = derive2 { name="spaa"; version="0.2.2"; sha256="163iipz1knxx1lzby9a3n1f014yqkf25z1wpwwy4gbx7sia499d5"; depends=[]; }; space = derive2 { name="space"; version="0.1-1.1"; sha256="09dpksbda4lg5hax47a9h9shjmggza6583slvdj0fldblykpyxck"; depends=[]; }; spaceNet = derive2 { name="spaceNet"; version="1.2"; sha256="1s2672icxs0qvdhl52xhllgvh1i9mjfrn5j3icyw6h61ljbnhy11"; depends=[MASS mclust permute RcppTN Rfast sna vegan]; }; - spacefillr = derive2 { name="spacefillr"; version="0.2.0"; sha256="1gqwz5j26z7ar3syzgj734mxi77m6mj0jrij32grcls79m8iy329"; depends=[Rcpp]; }; + spacefillr = derive2 { name="spacefillr"; version="0.3.0"; sha256="0c4yasc1zizjmhd2ciyz86lg76fsrxvl19yjkb2fmkda9rmnc0bf"; depends=[Rcpp]; }; spacejamr = derive2 { name="spacejamr"; version="0.2"; sha256="1hyf4wmwfjlw3qh3rw3wq94slybrpm2zmmcfgy7gqcycmfddrg8w"; depends=[crsuggest dplyr ggplot2 ggraph ggthemes igraph magrittr sf spatstat_geom spatstat_random]; }; spacesRGB = derive2 { name="spacesRGB"; version="1.4-0"; sha256="1py93g7wglszcrkm09y0am2iia972q0jbgwb2wmickw3xsgip8p5"; depends=[]; }; spacesXYZ = derive2 { name="spacesXYZ"; version="1.1-1"; sha256="1jxwhpnfbqa2nz86l8sdxxj3qmasw1wmbii7wr8sqp2819jr5lnd"; depends=[]; }; @@ -16892,13 +16965,12 @@ in with self; { spacey = derive2 { name="spacey"; version="0.1.1"; sha256="1p8kx3d08q9kz1wb286m3d8ckwkhfm5n42m65m4w5gz5kpfx0xfz"; depends=[httr jsonlite magrittr png raster rayshader rgdal]; }; spacyr = derive2 { name="spacyr"; version="1.2.1"; sha256="1b2ccgwsiqkvp7w37x8k7699c676q16vfrybkrfvyczyhki4s6nw"; depends=[data_table reticulate]; }; spaero = derive2 { name="spaero"; version="0.6.0"; sha256="0xigwi6w21y2fwicml0s2gylwnwp2qvrqskr0v8rd3bn01hg9ja3"; depends=[]; }; - spagmix = derive2 { name="spagmix"; version="0.3-4"; sha256="032dmz8cx4j5vl229gi1xkncc1wggfrf1a24qqwl2bzxrdfp27rw"; depends=[abind mvtnorm RandomFields sparr spatstat spatstat_core spatstat_geom spatstat_linnet]; }; spam = derive2 { name="spam"; version="2.8-0"; sha256="1ann2a2ifr3z983fcg1c0pkgmbxz6a0ym5q1dmq1r382bd1pg0fr"; depends=[dotCall64]; }; spam64 = derive2 { name="spam64"; version="2.8-0"; sha256="105h8j1ps2g79csbhwfchfdfxhqbbs793pxk3hqln57p6nap74i6"; depends=[]; }; spamtree = derive2 { name="spamtree"; version="0.2.2"; sha256="1z1dyv6cvcdilqyfpzgl3zr0jmzjn2sznrvypvxx7c8i6qfq8nd0"; depends=[dplyr FNN magrittr Rcpp RcppArmadillo rlang tibble]; }; spanel = derive2 { name="spanel"; version="0.1"; sha256="1riyvvfij277mclgik41gyi01qv0k466wyk2wbqqhlvrlj79yzsc"; depends=[]; }; spanish = derive2 { name="spanish"; version="0.4.2"; sha256="15drc11lh0qxpww50p0smi8qxfbln82bx0yd74jqf71irhk5jxyp"; depends=[magrittr xml2]; }; - spant = derive2 { name="spant"; version="1.17.0"; sha256="0bsjxb72w7wpprxsnv6ylac54pg315ih35ww5z8mjmbpl2ilqmck"; depends=[abind expm fields foreach irlba jsonlite magrittr minpack_lm mmand nloptr numDeriv plyr pracma ptw RNifti RNiftyReg signal smoother stringr]; }; + spant = derive2 { name="spant"; version="1.19.0"; sha256="12cnf8s4xzw4qvhc3i10mch2pck9rini5qkvjg19264p4rwh0xpd"; depends=[abind expm fields foreach irlba jsonlite magrittr minpack_lm mmand nloptr numDeriv plyr pracma ptw RNifti RNiftyReg signal smoother stringr]; }; sparcl = derive2 { name="sparcl"; version="1.0.4"; sha256="138krflvfdlx4hlh90mswds51i8aw2vv00gm5lgkfsvxj4w324jg"; depends=[]; }; spark_sas7bdat = derive2 { name="spark.sas7bdat"; version="1.4"; sha256="1s1hd6hvjxnfb3w10v93pggijmm2h4rcsf7ckl34j2sw9bvv7zka"; depends=[sparklyr]; }; sparkavro = derive2 { name="sparkavro"; version="0.3.0"; sha256="0g6ac9msfbx8f8j8rj0hvlxjsn317zyam207q7i8kf0hshs1r58f"; depends=[DBI dplyr sparklyr]; }; @@ -16912,7 +16984,7 @@ in with self; { sparktf = derive2 { name="sparktf"; version="0.1.0"; sha256="0jd018n7553q0ldv6whxbj2s38myig0m8zq4fbp8fsv34q5wnsx4"; depends=[sparklyr]; }; sparkwarc = derive2 { name="sparkwarc"; version="0.1.6"; sha256="0nzw6lgjrgqd1hj46jd52s8s3vdb7q2nc500jlgd0ydrr12zd123"; depends=[DBI Rcpp sparklyr]; }; sparkxgb = derive2 { name="sparkxgb"; version="0.1.1"; sha256="1h7jk76v9wfm8qzqy6lhsmsp767wydwba9xyqszndl88295iac1j"; depends=[forge sparklyr]; }; - sparr = derive2 { name="sparr"; version="2.2-15"; sha256="0c0vr4js6rcbyk85sld28m130d5zdymncpipzpkpzis3ismnlgp4"; depends=[doParallel foreach misc3d spatstat spatstat_core spatstat_geom spatstat_utils]; }; + sparr = derive2 { name="sparr"; version="2.2-16"; sha256="0qhlkx7byx3245yzsk30zr4lgndjx5g1vr0s4azmcya245pp6rkw"; depends=[doParallel foreach misc3d spatstat spatstat_core spatstat_geom spatstat_random spatstat_utils]; }; sparrpowR = derive2 { name="sparrpowR"; version="0.2.5"; sha256="187571srw0yhvqdgfpa374zmlaxhjmj9xlnh9gm2v4j46pfvrs5n"; depends=[doFuture doRNG fields foreach future iterators lifecycle raster sp sparr spatstat_geom spatstat_random]; }; sparseBC = derive2 { name="sparseBC"; version="1.2"; sha256="0a1siyi9kc805qji4alnw3c21spf4iw4wpsbfl50zvs52p8vl8w2"; depends=[fields glasso]; }; sparseEigen = derive2 { name="sparseEigen"; version="0.1.0"; sha256="0vqcy61rarmp3liz8fr3vs3y40hkb3wfw89b5xsj1byaiap4772s"; depends=[]; }; @@ -16930,6 +17002,7 @@ in with self; { sparsebn = derive2 { name="sparsebn"; version="0.1.2"; sha256="1b1601n3nmxck6a27xqxpsa79p4xnz7yyzdfqiddn9zd2b4v9wc5"; depends=[ccdrAlgorithm discretecdAlgorithm sparsebnUtils]; }; sparsebnUtils = derive2 { name="sparsebnUtils"; version="0.0.8"; sha256="1x1phd33r3ci72sbm0pkmigwbi4x59pdz8n5919119mkxdf740vs"; depends=[Matrix nnet]; }; sparsediscrim = derive2 { name="sparsediscrim"; version="0.3.0"; sha256="1fzvki3az1y5bz6d7lygv3hjbzn17gq8g2s7xqmldlpq1v4dhjar"; depends=[bdsmatrix corpcor dplyr ggplot2 mvtnorm rlang]; }; + sparsegl = derive2 { name="sparsegl"; version="0.3.0"; sha256="0aiaspl9sybyg7sa9pzmnrbjdvxplsmzip0v5imrmqvjszrkbrf8"; depends=[assertthat dotCall64 ggplot2 magrittr Matrix rlang RSpectra tidyr]; }; sparseinv = derive2 { name="sparseinv"; version="0.1.3"; sha256="06inzix9m7b5g7c97lyvyl2g7fdr4iz60791hl2w9mah7nd6bfja"; depends=[Matrix Rcpp spam]; }; sparsenet = derive2 { name="sparsenet"; version="1.4"; sha256="1r7xmpn3r8dq1zm6ghygks3l014kqlrpfgsl8q23w7rly8ksw3m9"; depends=[Matrix shape]; }; sparsepca = derive2 { name="sparsepca"; version="0.1.2"; sha256="0wk2nm37p15gb8i4s45izzzdmwywr56kv4g0j3jd5s3slm224vv4"; depends=[rsvd]; }; @@ -16959,21 +17032,21 @@ in with self; { spatialwarnings = derive2 { name="spatialwarnings"; version="3.0.2"; sha256="1yng9sxhqm04vliwz4jifqsqhvg1nk0icb6j21kp4cfwz81q2s2a"; depends=[future future_apply ggplot2 gsl plyr Rcpp RcppArmadillo segmented]; }; spatialwidget = derive2 { name="spatialwidget"; version="0.2.3"; sha256="0j0v0cyqndlg9p7g03gp1br9b2i3p50abzpw67k3cawm96a87crj"; depends=[BH colourvalues geojsonsf geometries jsonify rapidjsonr Rcpp sfheaders]; }; spatsoc = derive2 { name="spatsoc"; version="0.1.16"; sha256="1pyw6606kwskgcfnzvgzvy8n4i9s3mmn1789d1lhk04h14r33fns"; depends=[adehabitatHR data_table igraph rgeos sp]; }; - spatstat = derive2 { name="spatstat"; version="2.3-0"; sha256="01jckks3j39854mhsarzyzn4rj82h1xrnyd2b6fyzizj48vl80ns"; depends=[spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_utils]; }; - spatstat_Knet = derive2 { name="spatstat.Knet"; version="2.0-0"; sha256="1w9ag7v18mvy4dl1gz2w8xjhw9n2sf9zycqz3mraajis831c76ix"; depends=[Matrix spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_sparse spatstat_utils]; }; - spatstat_core = derive2 { name="spatstat.core"; version="2.3-2"; sha256="0g7nj8nf9ywhdbc5irxlry6kzq6bwwbkk9cp22kyv1wigycnskbz"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_geom spatstat_sparse spatstat_utils tensor]; }; + spatstat = derive2 { name="spatstat"; version="2.3-3"; sha256="0skk377fw448gvdk6jkcviqbqdjn2vdz19vfk8aiilxax4xba1hr"; depends=[spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_random spatstat_utils]; }; + spatstat_Knet = derive2 { name="spatstat.Knet"; version="2.0-1"; sha256="1mxynbk5sclf94fbrf6vicc48hwmdpxhyxylcmpmlqji4nhs97vx"; depends=[Matrix spatstat spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_random spatstat_sparse spatstat_utils]; }; + spatstat_core = derive2 { name="spatstat.core"; version="2.4-0"; sha256="1dx6fh6l3bqxqfaczm9gxx1sirmdpx8biag462pj9wjqmw9m4j35"; depends=[abind goftest Matrix mgcv nlme rpart spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; }; spatstat_data = derive2 { name="spatstat.data"; version="2.1-2"; sha256="1r8s4xl25xr71h4g5qqi5y370h2ik3kz5fb4qyml2b6dwsl1ildv"; depends=[Matrix spatstat_utils]; }; - spatstat_geom = derive2 { name="spatstat.geom"; version="2.3-1"; sha256="1h3ja45in7hnar2gwqp18jkz4rcqi99gllar6jqzlsvdbb85hgpj"; depends=[deldir polyclip spatstat_data spatstat_utils]; }; - spatstat_gui = derive2 { name="spatstat.gui"; version="2.0-0"; sha256="0v26pmi6ir38hsfhkmkz7njf8b12y8dgacqz54vy9giq73k71j14"; depends=[rpanel spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_utils]; }; - spatstat_linnet = derive2 { name="spatstat.linnet"; version="2.3-1"; sha256="1hrqa2i6mp7d79jw4h56b8hk9590959s79vh9xcsj6k5vbisd6qi"; depends=[Matrix spatstat_core spatstat_data spatstat_geom spatstat_sparse spatstat_utils]; }; - spatstat_local = derive2 { name="spatstat.local"; version="4.1-1"; sha256="185ypf91d5faybm6ixiz419wsip2swsg3vsbbw3z4w1kqrj7m884"; depends=[spatstat_core spatstat_data spatstat_geom spatstat_sparse spatstat_utils tensor]; }; - spatstat_random = derive2 { name="spatstat.random"; version="2.0-0"; sha256="0r22hm1rlk61nhhh4w3rbrbpzzirigb9v212hps1m2cibx1f816b"; depends=[spatstat_data spatstat_geom spatstat_sparse spatstat_utils]; }; + spatstat_geom = derive2 { name="spatstat.geom"; version="2.3-2"; sha256="0aihimb4r6hmk3g7764d3b43a0znf9bzmc96i1lkqq9hwabj7151"; depends=[deldir polyclip spatstat_data spatstat_utils]; }; + spatstat_gui = derive2 { name="spatstat.gui"; version="2.0-1"; sha256="1snvy4q0w4yn24n2yxyqvdi70i70zpqa7q13cm38d9135hm35cgk"; depends=[rpanel spatstat spatstat_core spatstat_data spatstat_geom spatstat_linnet spatstat_random spatstat_utils]; }; + spatstat_linnet = derive2 { name="spatstat.linnet"; version="2.3-2"; sha256="0y1py6x0xbw4ad3pjwcspi4ysgfh61f5fd79787zzgyyh2va8y4w"; depends=[Matrix spatstat_core spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils]; }; + spatstat_local = derive2 { name="spatstat.local"; version="4.1-4"; sha256="07hmjxrq7k3z43l4f0a141alcg787xhqgl8skk405s1g29xzpnyc"; depends=[spatstat spatstat_core spatstat_data spatstat_geom spatstat_random spatstat_sparse spatstat_utils tensor]; }; + spatstat_random = derive2 { name="spatstat.random"; version="2.1-0"; sha256="0ggzl64iqf7b6n81ga66wb01sm4rmzrbimv2pmgy047mjnqsnpq4"; depends=[spatstat_data spatstat_geom spatstat_utils]; }; spatstat_sparse = derive2 { name="spatstat.sparse"; version="2.1-0"; sha256="148fxbxss569w73xaqpzwpz9rfjdgznh2ngf06gvm33631222680"; depends=[abind Matrix spatstat_utils tensor]; }; spatstat_utils = derive2 { name="spatstat.utils"; version="2.3-0"; sha256="06nvn2ffyrskhzaavsy6lmdp0m8askkrp1fnwrhjsj01lbjnq2az"; depends=[]; }; - spatsurv = derive2 { name="spatsurv"; version="1.6"; sha256="02bq3hvvjfxndskd5yrchq0r9dv7mxplzq3pvs3jrsd35sfcns3w"; depends=[fields iterators lubridate Matrix RandomFields raster RColorBrewer rgeos sp spatstat spatstat_core spatstat_geom stringr survival]; }; + spatsurv = derive2 { name="spatsurv"; version="1.7"; sha256="01666mp43p0cv0hsn3wbv5vbb4gyjk506spff9ps119bcpqnwqjr"; depends=[fields iterators lubridate Matrix RandomFields raster RColorBrewer rgeos sp spatstat spatstat_core spatstat_geom spatstat_random stringr survival]; }; spbabel = derive2 { name="spbabel"; version="0.5.5"; sha256="0yfkz28nfvl3rm0bxljb3y19zhnx7pabxy81d835pbfmjq5vvp51"; depends=[dplyr rlang sp tibble]; }; spc = derive2 { name="spc"; version="0.6.5"; sha256="1s9f67m3a52mzk5s6hh9jv80m721s0z43x2qj2d4ski2jwqw0iyr"; depends=[]; }; - spc4sts = derive2 { name="spc4sts"; version="0.5.4"; sha256="17pn6hn5x3isyn44xzvvwby2jiapa4gid0y4kirkcvxf6n7rdhjx"; depends=[gridExtra LS2Wstat rpart]; }; + spc4sts = derive2 { name="spc4sts"; version="0.5.5"; sha256="14398a65fpdjlr39lwivin551m31mcr5hx47fx2dx7sklq8kr2bg"; depends=[gridExtra LS2Wstat rpart]; }; spcadjust = derive2 { name="spcadjust"; version="1.1"; sha256="016i3zaaq800x4niz4fixa57nfj1m10sz5xskff4vq4v9fjn2sl0"; depends=[]; }; spcosa = derive2 { name="spcosa"; version="0.4-0"; sha256="0aszpwhf4ww6kb7r75i17kf6mqy9cx021b0w5dzd6185p57g6sxv"; depends=[ggplot2 rJava sp]; }; spcov = derive2 { name="spcov"; version="1.01"; sha256="1brmy64wbk56bwz9va7mc86a0ajbfy09qpjafyq2jv7gm7a35ph5"; depends=[]; }; @@ -16984,7 +17057,6 @@ in with self; { spdplyr = derive2 { name="spdplyr"; version="0.4.0"; sha256="0lijp78wgrky103137vfk3k4s051qppd6jq6s065k9i7y1azbpc1"; depends=[dplyr rlang sp spbabel tibble]; }; spduration = derive2 { name="spduration"; version="0.17.1"; sha256="1hsz4hcw85f1rj2pd8ppzsd1r8fh4yf6axc11yf2hd287ghzzxzy"; depends=[corpcor forecast MASS plyr Rcpp RcppArmadillo separationplot xtable]; }; spdynmod = derive2 { name="spdynmod"; version="1.1.6"; sha256="1zbh1p3lmil4vsrw7q6af3p5xqvhw2k9hx59kbzabnzj4gy8wjk3"; depends=[animation deSolve raster sp]; }; - spe = derive2 { name="spe"; version="1.1.2"; sha256="0xyx42n3gcsgqmy80nc9la6p6gq07anpzx0afwffyx9fv20fvys0"; depends=[]; }; speakr = derive2 { name="speakr"; version="3.2.0"; sha256="12m7f4m0jglnbv7i9ackmymh7jc90vjg6yr6ns08b8qcqmzmf9if"; depends=[ggplot2 lifecycle readr stringr tibble]; }; speaq = derive2 { name="speaq"; version="2.6.1"; sha256="15v7lr2mczqc5ma2n9gyszfkyljnsds6c8lc5vy0qkvwfl01sv3v"; depends=[cluster data_table doSNOW foreach ggplot2 gridExtra impute MassSpecWavelet missForest mQTL reshape2 Rfast rvest xml2]; }; spearmanCI = derive2 { name="spearmanCI"; version="1.0"; sha256="1xi51dphv91j5hgrd25sqs1li0g24cwpa1k162arw5b0qfl04f17"; depends=[emplik MASS]; }; @@ -17006,7 +17078,8 @@ in with self; { spectrolab = derive2 { name="spectrolab"; version="0.0.16"; sha256="0qfzkf8dm5r5sbadipcqvfs1965l365g9000rgl9713v9lmshmy6"; depends=[RColorBrewer shiny shinyjs]; }; sped = derive2 { name="sped"; version="0.2-1"; sha256="05igpk8szdcs6kjhpmd9dmjvqdg199pz3hi0rwkhdjglxivvjzjn"; depends=[pooh]; }; speech = derive2 { name="speech"; version="0.1.4"; sha256="17j4hwfqsazakkdxdrx87dfpmdsh51mms31sm3hpnzh4j7ijcg86"; depends=[dplyr lubridate magrittr pdftools purrr rvest stringr tibble tidyr tm]; }; - speedglm = derive2 { name="speedglm"; version="0.3-3"; sha256="0f37w4lj8dpcg1sfkd7cv6qpdkanmb97mnd8zih2fxzv8bpd0rfh"; depends=[MASS Matrix]; }; + speechbr = derive2 { name="speechbr"; version="1.0.0"; sha256="0nifv74rh4qla3cd92bnjn77n39fyxvxb4hlix3lk096c0qxgp7s"; depends=[abjutils dplyr glue httr janitor lubridate magrittr purrr rlang rvest stringr tibble tidyr xml2]; }; + speedglm = derive2 { name="speedglm"; version="0.3-4"; sha256="1kj662nfkfhvx37jrbvxd4dyjclz5cm3xh50z7s5rbzapiyxn4hs"; depends=[MASS Matrix]; }; speedycode = derive2 { name="speedycode"; version="0.2.0"; sha256="1fz8a6z77r17rld1qqiq3hsk65fpjz8f6czcfqsc8y2fxm0jy602"; depends=[dplyr purrr stringr]; }; spef = derive2 { name="spef"; version="1.0.9"; sha256="115lmv2a21ws1mj22v1fbk72mqn3siqmw3frbg4nci96lnyr7qh6"; depends=[BB ggplot2 nleqslv plyr sm SQUAREM survival]; }; speff2trial = derive2 { name="speff2trial"; version="1.0.4"; sha256="0dj5mh2sdp6j4ijgv14hjr39rasab8g83lx1d9y50av11yhbf2pw"; depends=[leaps survival]; }; @@ -17017,7 +17090,7 @@ in with self; { sperrorest = derive2 { name="sperrorest"; version="3.0.4"; sha256="169bv07vwlbn2ihw0f8hx10qrfdww9lqb2j8wgrkh1xnkskz13hv"; depends=[dplyr future future_apply ROCR stringr]; }; spex = derive2 { name="spex"; version="0.7.1"; sha256="0lsmh1sywd4si0v10aix44hybwph3gan8w8cxz956dcgkz60p41v"; depends=[crsmeta quadmesh raster reproj sp]; }; spfda = derive2 { name="spfda"; version="0.9.0"; sha256="156vs1f75x0wbf65fwzkhlbda649sryf58xixi7gbfjzn873w111"; depends=[mathjaxr]; }; - spfilteR = derive2 { name="spfilteR"; version="1.1.2"; sha256="13dcw8apkcs13h4d0kkxgv8fnrsj1d5gfkcjjw1spqbq5pjaqvgv"; depends=[]; }; + spfilteR = derive2 { name="spfilteR"; version="1.1.4"; sha256="0cxc7zrzwr07wk7yv26li6fwmbv3q57vdamzalfrj1npszzkg1s7"; depends=[]; }; spflow = derive2 { name="spflow"; version="0.1.0"; sha256="0a5nirccwcc2z4dn3gxdlhdjz7sxv1r23clawy0kwn4ggdkmphp1"; depends=[coda Matrix Rdpack RSpectra]; }; spftir = derive2 { name="spftir"; version="0.1.0"; sha256="07vw8igy698jx671cj6hmf6ll9xvaq81fb6la7j95pqbd6jl284z"; depends=[pracma]; }; spgrass6 = derive2 { name="spgrass6"; version="0.8-9"; sha256="05xvdhisad0d7c69mvahzg6pvgvmb6dph50r34981palykic7qhn"; depends=[sp XML]; }; @@ -17036,7 +17109,7 @@ in with self; { spikeslab = derive2 { name="spikeslab"; version="1.1.5"; sha256="0dzkipbrpwki6fyk4hqlql3yhadwmclgbrx00bxahrmlaz1vjzh2"; depends=[lars randomForest]; }; spinBayes = derive2 { name="spinBayes"; version="0.1.0"; sha256="1qgqxxk4n17wj3q07irm2qj6lwc5188iwwbdkf588hvfy86lwpj8"; depends=[glmnet MASS Rcpp RcppArmadillo]; }; spind = derive2 { name="spind"; version="2.2.1"; sha256="1yasqy086h4dv348krisc024mic0dvdsncqys95l85924djlfipp"; depends=[gee geepack ggplot2 lattice MASS RColorBrewer rje rlang splancs stringr waveslim]; }; - spinifex = derive2 { name="spinifex"; version="0.3.3"; sha256="15k09aih714cg635w39jk1jz4hnyqw2kics2pnhdywmxci23c74c"; depends=[gganimate ggplot2 magrittr plotly Rdimtools shiny tourr transformr]; }; + spinifex = derive2 { name="spinifex"; version="0.3.5"; sha256="08sj1crngk28d9b1qayxffwgg16imcqk8mpnp7fsjfrjih68a7sw"; depends=[gganimate ggplot2 magrittr plotly Rdimtools shiny tourr transformr]; }; spinyReg = derive2 { name="spinyReg"; version="0.1-0"; sha256="0kbg7rncrrl5xdsaw9vj909x97mfp77mjnvghczplmnwmmanyn72"; depends=[]; }; spiralize = derive2 { name="spiralize"; version="1.0.5"; sha256="0m0809b34l8mp0czpcq144hw5p10g35lsb8z7l8ls2kclb8xjcs8"; depends=[circlize GetoptLong GlobalOptions lubridate]; }; spiritR = derive2 { name="spiritR"; version="0.1.1"; sha256="1fjr63rl9hwqxzgm4lkb9v74cxxpi4lrlcgjixdm7zgccm8ihdvh"; depends=[httr magrittr xml2]; }; @@ -17089,7 +17162,8 @@ in with self; { sprm = derive2 { name="sprm"; version="1.2.2"; sha256="0iyijkjnyz4yx2cmazlnhkk0f5ls0c2q2aikwlzl13w6zbj040a8"; depends=[cvTools ggplot2 pcaPP reshape2 robustbase]; }; sprsmdl = derive2 { name="sprsmdl"; version="0.1-0"; sha256="09klwsjp5w6p7dkn5ddmqp7m9a3zcmpr9vhcf00ynwyp1w7d26gi"; depends=[]; }; sprtt = derive2 { name="sprtt"; version="0.1.0"; sha256="1lj4qrn8ajl9lmx9qrcxrrd187khs3afvmf2hpwmakxfn6sajm0z"; depends=[]; }; - sps = derive2 { name="sps"; version="0.1.2"; sha256="1z5r7fmysv9qw8rjrw469mabrdj6pn70y726rqn3ys0kjiz3h47m"; depends=[]; }; + spruce = derive2 { name="spruce"; version="0.99.1"; sha256="1kklv4d2ycjcxv183cpqa6qn46zn8nww1z8xn4sy7ipz394i10cf"; depends=[BayesLogit dplyr ggplot2 igraph MCMCpack mvtnorm patchwork Rcpp RcppArmadillo rlang Seurat tidyr tidyselect truncnorm]; }; + sps = derive2 { name="sps"; version="0.1.3"; sha256="0lgrzkwbkyzwbk4fyl012qqvnfmq1ina8cdg3qr25bwjhwhscipx"; depends=[]; }; spsComps = derive2 { name="spsComps"; version="0.3.2.0"; sha256="1ndii6jjnijkdngngqxwwdxi3p5fcn6g4lzajvhi2ywda0in492p"; depends=[assertthat crayon glue htmltools magrittr R6 shiny shinyAce shinytoastr stringr]; }; spsUtil = derive2 { name="spsUtil"; version="0.2.2"; sha256="1hhiz2bmgrvpadag1d4ljynk7mhwknaslja9hcmf665l2x3hzdl6"; depends=[assertthat crayon glue httr magrittr R6 stringr]; }; spselect = derive2 { name="spselect"; version="0.0.1"; sha256="02aiml4dh40n6yl52ypramn4847ykdi4y5lhsmchnnp4nnnqycsn"; depends=[magic pracma tester]; }; @@ -17097,7 +17171,7 @@ in with self; { spsi = derive2 { name="spsi"; version="0.1"; sha256="0q995hdp7knic6nca0kf5yzkvv8rsskisbzpkh9pijxjmp1wnjrx"; depends=[plot3D]; }; spsur = derive2 { name="spsur"; version="1.0.2.0"; sha256="0dkbl5x2h1l34ybhb4zdygnf7fdga78aaq4nb9kqyw6xjfrcsazn"; depends=[car Formula ggplot2 gmodels gridExtra knitr lmtest MASS Matrix minqa numDeriv Rdpack rlang rmarkdown sparseMVN spatialreg spdep]; }; spsurv = derive2 { name="spsurv"; version="1.0.0"; sha256="11jlbzvzxv3d1d0nwpbii46ddvphglrxv25rw7pvxbybcx2i7k6x"; depends=[BH coda loo MASS Rcpp RcppEigen rstan rstantools StanHeaders survival]; }; - spsurvey = derive2 { name="spsurvey"; version="5.2.0"; sha256="1yc3r0jz2p08432nd3v958fzid97nwknk5jn277jylw2rkx7avd5"; depends=[boot crossdes deldir lme4 MASS sampling sf survey units]; }; + spsurvey = derive2 { name="spsurvey"; version="5.3.0"; sha256="1wvl6lbww82c1z83928zgn5l1ciayppb6k84l2syxn6fs1xjadbc"; depends=[boot crossdes deldir lme4 MASS sampling sf survey units]; }; spt = derive2 { name="spt"; version="2.5.1"; sha256="04j38d2b35p4798znnc49vqrg8r8bygwi07vybfj3nzimlp2mkrn"; depends=[]; }; sptm = derive2 { name="sptm"; version="2019.11-25"; sha256="1hdymzngdppmh56dqh0k88n9hg68pbx9rgmimbz4ihnfx2plvadh"; depends=[kyotil survey survival]; }; sptotal = derive2 { name="sptotal"; version="1.0.0"; sha256="0lcq7ldrgy93i1pk2hhwfmhqhmijv9g5p7jdsh9hrfky51w8vrql"; depends=[ggplot2 sp viridis]; }; @@ -17120,7 +17194,7 @@ in with self; { srm = derive2 { name="srm"; version="0.3-6"; sha256="0mc97pv1hsmia4v2wyb8yi37i3v1xypfv9xmhjb989xnnysf1lm3"; depends=[Rcpp RcppArmadillo]; }; srp = derive2 { name="srp"; version="1.2.0"; sha256="0xdzfvi7z78xmyxwd8fha3lr86jwmgjba1w8hhn4sv3v5gc9vlkh"; depends=[fda mgcv]; }; srt = derive2 { name="srt"; version="1.0.3"; sha256="0m94ycnrlgjvlx9jzb05rdg57yxwsw3p7zjih0m04vb1369j83q1"; depends=[]; }; - srvyr = derive2 { name="srvyr"; version="1.1.0"; sha256="0gq53s3m7vzlyi04zijljmjllwy3gf8kjpb5w3hbiic77g1mlw21"; depends=[dplyr magrittr rlang survey tibble tidyr tidyselect vctrs]; }; + srvyr = derive2 { name="srvyr"; version="1.1.1"; sha256="1sm86r9d9vc3cvi64xvypf65phqbnv527x7v3k3da0gzgz823wsf"; depends=[dplyr magrittr rlang survey tibble tidyr tidyselect vctrs]; }; ss3sim = derive2 { name="ss3sim"; version="1.0.3"; sha256="0s2yajlhi07fvqc0rr4msd9g2jrswb83dx55wsxnw925vikqa5kz"; depends=[bbmle foreach ggplot2 gtools r4ss]; }; ssMousetrack = derive2 { name="ssMousetrack"; version="1.1.5"; sha256="069jsp2l63jp4fv2hwadqxpkp89aqmbh439zy66rx55kws75b556"; depends=[BH CircStats cowplot dtw ggplot2 Rcpp RcppEigen rstan rstantools StanHeaders]; }; ssaBSS = derive2 { name="ssaBSS"; version="0.1"; sha256="1gprl725am933fqlhhxzwrg7k08sy0xndmg8v8hifxfwq9nbk0w9"; depends=[BSSprep ggplot2 ICtest JADE tsBSS xts zoo]; }; @@ -17155,12 +17229,12 @@ in with self; { ssvd = derive2 { name="ssvd"; version="1.0"; sha256="1fdpr38qi59ijrz16jixn6ii1hvmxfjirjqfcp7dxrqz9nx8x0sk"; depends=[]; }; ssym = derive2 { name="ssym"; version="1.5.7"; sha256="0l5d921vlhd4qwddllrgcxpq3bhivvy5ikh3ixdy3s140rzpgwrv"; depends=[Formula GIGrvg normalp numDeriv sandwich survival]; }; st = derive2 { name="st"; version="1.2.7"; sha256="0j29k9fg8659yw1jwmcakiic51rin1dj1fmvpapy2wmz4c3pr0fp"; depends=[corpcor fdrtool sda]; }; - stR = derive2 { name="stR"; version="0.4"; sha256="120k8k1l8cfy8x746808jym7lnaplgh4s3lycgyq2wia2c35r0rc"; depends=[foreach forecast Matrix quantreg rgl SparseM]; }; + stR = derive2 { name="stR"; version="0.5"; sha256="1nlb2d8a11kxiipv96sfmmcq185051vmdiwjjqayln143gvhzp7w"; depends=[foreach forecast Matrix quantreg SparseM]; }; sta = derive2 { name="sta"; version="0.1.5"; sha256="0q9pplx4ifndvbh2bfa96vjbcaaqdj6bq57kwlzhavq6hjq7d56v"; depends=[doParallel foreach geoTS iterators mapview raster RColorBrewer rgdal trend]; }; staRdom = derive2 { name="staRdom"; version="1.1.23"; sha256="0gsix1dxk4gn2iq0zqbm7fyzxxnyzbgdlcbk11lqirx9x0xmwj80"; depends=[cdom data_table doParallel dplyr drc eemR foreach GGally ggplot2 gtools matrixStats MBA multiway pracma R_matlab readr stringr tibble tidyr viridisLite zoo]; }; - stabiliser = derive2 { name="stabiliser"; version="0.1.1"; sha256="1m11gf0fi6x3b4g4ngnra4vdl0fwh045zvlbajh0mfbim3nkahx2"; depends=[bigstep broom caret dplyr ggplot2 glmnet knitr ncvreg purrr rsample stringr tibble tidyr]; }; + stabiliser = derive2 { name="stabiliser"; version="0.1.2"; sha256="0vpmq1g4vmg02nydkg4q6li00zwvxwm0bad0prhn4kfnlzhkk864"; depends=[bigstep broom caret dplyr ggplot2 glmnet knitr ncvreg purrr rsample stringr tibble tidyr]; }; stability = derive2 { name="stability"; version="0.5.0"; sha256="0mz7ikfhpfbdcp72klq7fi4zfmx2w18gz46yhwywcc4dyi277m11"; depends=[dplyr ggfortify ggplot2 lme4 magrittr matrixStats reshape2 rlang scales tibble tidyr]; }; - stable = derive2 { name="stable"; version="1.1.4"; sha256="01azqg4yi5wl6wfdpjq57w41x5z2b4dsp5n3vpkz24b9avk6rm8s"; depends=[rmutil stabledist]; }; + stable = derive2 { name="stable"; version="1.1.6"; sha256="194xsa291v5f0jya1c3aigbclg8cci427ffpb8brxamm6n57hf12"; depends=[rmutil]; }; stableGR = derive2 { name="stableGR"; version="1.1"; sha256="1fbbghqkd6vpnlnzgc6fsdpvlc7lw6nxwy5whdg7zgxkwqvqj8n3"; depends=[mcmcse mvtnorm]; }; stabledist = derive2 { name="stabledist"; version="0.7-1"; sha256="0scar396wiq6wkbkvwp4qrxqc1m075y56p37i6iry5rw796p1i86"; depends=[]; }; stablelearner = derive2 { name="stablelearner"; version="0.1-3"; sha256="0h2xqm9g4zx72r6r0a7if1kyrqrjr8hs1pi07h294hbg8l7yvhxb"; depends=[e1071 MASS party partykit randomForest ranger]; }; @@ -17174,14 +17248,13 @@ in with self; { stagePop = derive2 { name="stagePop"; version="1.1-1"; sha256="0949r5ibl3sb10sr5xsswxap3wd824riglrylk7fx43ynsv5hzpy"; depends=[deSolve PBSddesolve]; }; stagedtrees = derive2 { name="stagedtrees"; version="2.2.0"; sha256="01qb8pw0al3b3b6smcapd61i81p6xw3hh1x8i6dsb73pdvpbfyxj"; depends=[]; }; staggered = derive2 { name="staggered"; version="1.1"; sha256="0z9358qbgn637j8iz5qwr4nyrlvi9w85l325vxpc61mcwksx5ip8"; depends=[coop dplyr magrittr MASS purrr Rcpp RcppEigen reshape2 tidyr]; }; - stam = derive2 { name="stam"; version="0.0-1"; sha256="1x1j45fir64kffny0nssb2hwn4rcp8gd2cjv6fw4yy0l4d0xi5iv"; depends=[np sp]; }; stampr = derive2 { name="stampr"; version="0.2"; sha256="10mc71kgnw5712q2gvzd4bmjaw1879r7s599hfsjap21idqb2k2m"; depends=[deldir maptools raster rgdal rgeos sp spdep]; }; stan4bart = derive2 { name="stan4bart"; version="0.0-2"; sha256="0262z83rqwf38z2qrvngdz6wmnrz48w4ijv7wg81w1b1lp807y5s"; depends=[BH dbarts Matrix Rcpp RcppEigen RcppParallel]; }; standardize = derive2 { name="standardize"; version="0.2.2"; sha256="008nz9vf08qxwdsn373yzpmsw5lhbm6mpm6dlwyys58wq0bdvh28"; depends=[lme4 MASS stringr]; }; standartox = derive2 { name="standartox"; version="0.0.1"; sha256="1b5w66x4v8hfxzp3ahw97my6m0rcn22iv5nhgm2wzdq0if0cq8py"; depends=[curl data_table fst httr jsonlite]; }; stapler = derive2 { name="stapler"; version="0.7.1"; sha256="1bzhahn72fzm2bjpis76hphv8whnkp2jq8bm1qldadhng4z1nsak"; depends=[matrixStats RNifti]; }; staplr = derive2 { name="staplr"; version="3.1.1"; sha256="0g3a13qndi4w35wq9bm0gb2b8v9svih9gbj5ymggqlcwz1dzywga"; depends=[assertthat glue rJava stringr XML]; }; - stargazer = derive2 { name="stargazer"; version="5.2.2"; sha256="1pij76r60hkjlvxw6zw1v7gkib81smiqmjq7mwszn6xclq9lmsvh"; depends=[]; }; + stargazer = derive2 { name="stargazer"; version="5.2.3"; sha256="0ra284jxjb1n6sd3114zf5l5pjrb7m7j073k8bhnrx8wl549p3i0"; depends=[]; }; starm = derive2 { name="starm"; version="0.1.0"; sha256="0y580c6inmfix6agwd5nr340l3hjk2xxs95s468j5pghpjpb8rmv"; depends=[Matrix]; }; starma = derive2 { name="starma"; version="1.3"; sha256="07r0kyabhgbm2v39fcrw0qhxcxj9a9cb45g9chzcnn9qmvramcwx"; depends=[ggplot2 Rcpp RcppArmadillo scales]; }; starnet = derive2 { name="starnet"; version="0.0.6"; sha256="0gbg8svyj4nh846q7986ap7jjry599kb1348k9lifz19kvyr4rn4"; depends=[cornet glmnet Matrix survival]; }; @@ -17189,12 +17262,12 @@ in with self; { starsExtra = derive2 { name="starsExtra"; version="0.2.7"; sha256="06l9rpgw1dmvvn3389zzqrq4y87192k4zzj7xgvwzrdlrcxsqdh7"; depends=[mgcv nngeo sf stars units]; }; starsTileServer = derive2 { name="starsTileServer"; version="0.1"; sha256="1nw13r5gf8chr8zc3ypc6zzq811y8m0m2yin5y1gvim3wkfz63xj"; depends=[assertthat leaflet plumber png R6 rlang sf stars units]; }; starschemar = derive2 { name="starschemar"; version="1.2.0"; sha256="0jjaic1zwdc3lvdlgs0vzkjjivjs2dskmhx4qg469ban34az0591"; depends=[dplyr generics pander purrr readr rlang snakecase tibble tidyr tidyselect]; }; - startR = derive2 { name="startR"; version="2.1.0"; sha256="1cgn77jaiy7gfqbhh6w3x0bf57v32vzpp334mp50v827hgv439wy"; depends=[abind bigmemory ClimProjDiags easyNCDF future multiApply s2dverification]; }; + startR = derive2 { name="startR"; version="2.2.0"; sha256="12kigspfpmzibnr7y8m906qj1hm596wx8asghi0fd4598nk1w0s3"; depends=[abind bigmemory ClimProjDiags easyNCDF future multiApply PCICt s2dv]; }; starter = derive2 { name="starter"; version="0.1.8"; sha256="003ih4035hhka5cghr5j3h0gc9a2fxdafag8ffxxg8cvigh2m7fm"; depends=[dplyr fs gert glue here purrr R_utils readr renv rlang stringr tibble usethis]; }; - startup = derive2 { name="startup"; version="0.16.0"; sha256="1lqjig4jvy71w7082b5s209kmkchn39n0fksnvjp1prjvygh575w"; depends=[]; }; + startup = derive2 { name="startup"; version="0.17.0"; sha256="0i9qk9kqwqrgsazivg4prar48h1rvy2fiwrv2igmqggy253pnipm"; depends=[]; }; startupmsg = derive2 { name="startupmsg"; version="0.9.6"; sha256="0vkqxir4ady4dn9s70dfg1fxck2xg8vnmrmxjzvk01i6pc9zyq0x"; depends=[]; }; starvars = derive2 { name="starvars"; version="1.1.10"; sha256="1mq31g05ahpsmda2zrmkg1dlaqqk4c9hm9fjzhgrsxlg4j3klbbf"; depends=[doSNOW foreach ks lessR MASS matrixcalc optimParallel quantmod vars xts zoo]; }; - starvz = derive2 { name="starvz"; version="0.7.0"; sha256="166mppribk0hsx4rs3km0k44s7yww6ss5bmxn4434caj43rda5lr"; depends=[arrow BH data_tree dplyr ggplot2 gtools lpSolve magrittr patchwork purrr RColorBrewer Rcpp readr rlang stringr tibble tidyr yaml zoo]; }; + starvz = derive2 { name="starvz"; version="0.7.1"; sha256="0j22605vh0fpf17l78i3x9q5xia9qx841sg7hxhcjybn7vfkafsj"; depends=[arrow BH data_tree dplyr ggplot2 gtools lpSolve magrittr patchwork purrr RColorBrewer Rcpp readr rlang stringr tibble tidyr yaml zoo]; }; starwarsdb = derive2 { name="starwarsdb"; version="0.1.2"; sha256="00n9qqw4lbfk698qgvw8i42sy3dv5i5fiiqma3zks4rr9yspkldq"; depends=[DBI duckdb magrittr tibble]; }; stat_extend = derive2 { name="stat.extend"; version="0.2.1"; sha256="1qwjqnjds733xvxhby604yqvwlj1rkr3411diwzhbgwp89rhy11r"; depends=[sets]; }; statGraph = derive2 { name="statGraph"; version="0.5.0"; sha256="0fd7jsngd8gihivnir3y58961kvbdd5g1m5gm1da91984qs7r9q1"; depends=[cluster doParallel foreach igraph MASS rARPACK]; }; @@ -17206,14 +17279,15 @@ in with self; { statebins = derive2 { name="statebins"; version="1.4.0"; sha256="1v67da939qg672aqni2i37w70pgasgx6r55b4fjjc3zzviq8gipx"; depends=[ggplot2 scales]; }; states = derive2 { name="states"; version="0.3.1"; sha256="1yi7yigmxjcpa2p75bq0jj1pmiv5xh6zsxhayg7pa7p7fqdl3d9i"; depends=[dplyr lifecycle rlang]; }; statespacer = derive2 { name="statespacer"; version="0.4.0"; sha256="06qjbnp40mkbjxq14cwzpwcqymafm14cli1kmjfqwl4g1v9bvsx3"; depends=[Rcpp RcppArmadillo Rdpack]; }; - statgenGWAS = derive2 { name="statgenGWAS"; version="1.0.7"; sha256="1y740vpymxnyzdizayp6nqhwni363cgsf0323m0vxb76kd78jiid"; depends=[data_table ggplot2 Rcpp RcppArmadillo sommer]; }; + statgenGWAS = derive2 { name="statgenGWAS"; version="1.0.8"; sha256="0n2vkmn1cgping3h05bn66m4yhsd55df9g6iv1y3pz11zvw4w28q"; depends=[data_table ggplot2 Rcpp RcppArmadillo sommer]; }; statgenGxE = derive2 { name="statgenGxE"; version="1.0.4"; sha256="12v9a1lg12pmhzk28c929j1vhhh5x9gzb6ia9izvji2zjx2yigk4"; depends=[emmeans ggplot2 gridExtra knitr lme4 statgenSTA xtable]; }; statgenHTP = derive2 { name="statgenHTP"; version="1.0.5"; sha256="1lclxc4al3h7z5cbjhmm6p1hr22gysz16hlvfams37czbc2prlha"; depends=[animation factoextra ggforce ggnewscale ggplot2 gridExtra locfit lubridate reshape2 scales SpATS]; }; - statgenIBD = derive2 { name="statgenIBD"; version="1.0.2"; sha256="01pk5miwvs3mkx3dqj8pw9f38bikjk3vdih4h0gz2f7qav1kfyy9"; depends=[ggplot2 Rcpp RcppArmadillo]; }; + statgenIBD = derive2 { name="statgenIBD"; version="1.0.4"; sha256="1hjixzzxwvi6a9dz8n3xrz1zy9r7wzf54gp9m76pfbdnhjga3hgk"; depends=[ggplot2 Rcpp RcppArmadillo]; }; statgenSTA = derive2 { name="statgenSTA"; version="1.0.8"; sha256="1734gqcrwkxl3672pf147qh5n8lid4zk81zfanhqi6z83syw5ha5"; depends=[emmeans ggplot2 ggrepel gridExtra knitr lme4 mapproj maps qtl scales SpATS xtable]; }; stationaRy = derive2 { name="stationaRy"; version="0.5.1"; sha256="1620fdlybn3hr96yngnp802imr9b7n90835lyyd86r2wn6psdzvl"; depends=[downloader dplyr lubridate lutz magrittr progress readr stringr tidyr]; }; stationery = derive2 { name="stationery"; version="1.0"; sha256="07kwlmambjv7njgpw1dhsm2zrv1lk6xj2k6a6psysjllrf5zz8ga"; depends=[knitr kutils rmarkdown]; }; statip = derive2 { name="statip"; version="0.2.3"; sha256="0kymc3ds1nx0h11ffmm3vmqr1w34gd0k788vf72x2v45h8c1ma2n"; depends=[clue rpart]; }; + statisfactory = derive2 { name="statisfactory"; version="1.0.1"; sha256="0i5z9f1q7wi0qdgr0zj15x1q3jzavivnkwf07y5d1ch3nqxa4nqw"; depends=[omnibus rlist]; }; statmod = derive2 { name="statmod"; version="1.4.36"; sha256="1hkvklcav6gj4zib4g3b4xwsdsbsmnzdblr0v6jaqv227p49gs0l"; depends=[]; }; statnet = derive2 { name="statnet"; version="2019.6"; sha256="17dj6vjnjyqrfhzjq1lys5b29j942kd15zffb69jidni3slf20q9"; depends=[ergm ergm_count network networkDynamic sna statnet_common tergm tsna]; }; statnet_common = derive2 { name="statnet.common"; version="4.5.0"; sha256="0bw8dwnv568i60xrj6d7gv0hnna1x7rvqaayy5i0827khvdj7nrw"; depends=[coda]; }; @@ -17221,7 +17295,7 @@ in with self; { statnipokladna = derive2 { name="statnipokladna"; version="0.7.0"; sha256="0xds27abs9x853nhy5xljldmxh5xrkxfgn5q6qw8b093ynrsvbrp"; depends=[curl dplyr httr jsonlite lifecycle lubridate magrittr purrr readr rlang stringi stringr tibble tidyr tidyselect usethis xml2]; }; statprograms = derive2 { name="statprograms"; version="0.2.0"; sha256="0m7px7fmpz2zzlfdi7rbllcjvcjp8iy94f6fa1w4xinh7vz3y6vq"; depends=[]; }; statpsych = derive2 { name="statpsych"; version="1.0.0"; sha256="0rakzsbafhp5xps9bbb4pljv4c49ij1rwz64z0q5jjglc95kw55s"; depends=[mathjaxr Rdpack]; }; - statquotes = derive2 { name="statquotes"; version="0.2.2"; sha256="1xzc3ndddjrlyld0p4zcwwxkj7i3m3adj7c78x9l4lhlw9mxbbqg"; depends=[stringr tidytext wordcloud]; }; + statquotes = derive2 { name="statquotes"; version="0.2.6"; sha256="04pk4fqq6hjpn15f2xp7hy25vhw5z1qj3v79sq6smzak1vz92zsa"; depends=[stringr tidytext wordcloud]; }; stats19 = derive2 { name="stats19"; version="2.0.0"; sha256="0minav2ab9xa9xq5mardjcijaxhs3v1izxmy15v5zf04lhvz4f03"; depends=[readr sf]; }; statsExpressions = derive2 { name="statsExpressions"; version="1.3.0"; sha256="0kml7q4nhnirh8na12mfqgg0ka4vl2333piabw94hx4rjhajwxll"; depends=[BayesFactor correlation datawizard dplyr effectsize glue insight magrittr parameters performance rlang tibble tidyr WRS2 zeallot]; }; statsearchanalyticsr = derive2 { name="statsearchanalyticsr"; version="0.1.4"; sha256="0m2zv5sgv7w9yk6q7rwx8x2zy6xx5w0d6c9vynddr08pn4mdqjhs"; depends=[glue httr jsonlite lubridate purrr stringr tibble tidyr]; }; @@ -17240,6 +17314,7 @@ in with self; { stepPenal = derive2 { name="stepPenal"; version="0.2"; sha256="08gizl6c606ibbv7x2rdvfw37rghkrprwszha79yngkzpajw8gql"; depends=[caret dfoptim glmnet mvtnorm pROC]; }; stepPlr = derive2 { name="stepPlr"; version="0.93"; sha256="1i54nyz8z5vq3mzfh6h2vd1q0hsdazc4mhrj9ad0zdvn0qnz61lv"; depends=[]; }; stepR = derive2 { name="stepR"; version="2.1-1"; sha256="0mz88d7214g59nvr40c4gf4grq9skjqqlfgydbdzmc4l315nr4zv"; depends=[digest lowpassFilter R_cache Rcpp]; }; + stepSplitReg = derive2 { name="stepSplitReg"; version="1.0.0"; sha256="0glsc11ylh4bqhw0p8sdf6r171lzb522skcnfg9vwxn4sm9s93zm"; depends=[nnls Rcpp RcppArmadillo SplitGLM]; }; stepgbm = derive2 { name="stepgbm"; version="1.0.0"; sha256="1psjnxc7dadbm1405wm3vgsf9m2pn8bm82rn9md3cxhp33jqh1bx"; depends=[gbm spm steprf]; }; stepjglm = derive2 { name="stepjglm"; version="0.0.1"; sha256="0xsb0wg7ka4ska2jkzaic7kqdzj2fkhpf5sxr3a116f2najj9ax2"; depends=[rsq]; }; stepp = derive2 { name="stepp"; version="3.2.2"; sha256="1iyj1f9gzn44xllhm9y1j0ynfz4q48d2l8ic4mjvzc3p4z8cnpmz"; depends=[car rstudioapi scales survival]; }; @@ -17259,7 +17334,7 @@ in with self; { stlELM = derive2 { name="stlELM"; version="0.1.0"; sha256="1sn4yn24k2nkcc5vxdmzj7ym9kzwffyysd5ckbpv7fggf1vajnif"; depends=[forecast nnfor]; }; stlTDNN = derive2 { name="stlTDNN"; version="0.1.0"; sha256="1j2f9kxlry15xp7bc03h5jr7v8gzq8frdxyzhq9s78m3d3dbixf4"; depends=[forecast nnfor]; }; stlcsb = derive2 { name="stlcsb"; version="0.1.2"; sha256="08pnj1yb4xcbhnrp2wny8lq9rvcvmsgaza07k4358csfksvmcira"; depends=[dplyr lubridate purrr readr readxl rlang rvest sf stringr tibble xml2]; }; - stlnpp = derive2 { name="stlnpp"; version="0.3.7"; sha256="0ycx423qq8h53w6bd1kw6xv0skfsw19fqzyrp2scpw1af2496snq"; depends=[spatstat spatstat_core spatstat_geom spatstat_linnet]; }; + stlnpp = derive2 { name="stlnpp"; version="0.3.8"; sha256="1lx2fkqal2mf55xx0rwy9wf9fkr9n0vrp8fwic4grjcq0v5cf75k"; depends=[spatstat spatstat_core spatstat_geom spatstat_linnet spatstat_random]; }; stlplus = derive2 { name="stlplus"; version="0.5.1"; sha256="14728xsm982z9sg4rbqg307pbwqlsiyzj8z3sr9wr6fi0dayf6z5"; depends=[lattice Rcpp yaImpute]; }; stm = derive2 { name="stm"; version="1.3.6"; sha256="0qwq4nin2n9fjd06852r8k7arvcgh46kcfb3lm21swgx6j8bgrhb"; depends=[data_table glmnet lda Matrix matrixStats quadprog quanteda Rcpp RcppArmadillo slam stringr]; }; stmCorrViz = derive2 { name="stmCorrViz"; version="1.3"; sha256="1a4pckrbzsihyf1bqvw3cl0hxrc4yq1pnkgxgf4b8jday6zkxwcv"; depends=[jsonlite SnowballC stm tm]; }; @@ -17283,14 +17358,13 @@ in with self; { stosim = derive2 { name="stosim"; version="0.0.14"; sha256="10k8j7manskjsrjc1l44yhy682b1qh0k2jx3cs5k69j2z42mnhmk"; depends=[Rcpp]; }; stplanr = derive2 { name="stplanr"; version="0.8.7"; sha256="11a0cak6vf5snfpbbv0rbhcjryyd694d6vz1gyshxzwi6wgglhq0"; depends=[curl data_table dplyr geosphere httr jsonlite lwgeom magrittr maptools nabor pbapply raster Rcpp RcppArmadillo rgeos rlang sf sfheaders sp stringr]; }; stpm = derive2 { name="stpm"; version="1.7.10"; sha256="0y9rpqjn33gdqjvag4kb6dr00w80paspgj9ic25brclfv1zmzbhf"; depends=[MASS nloptr Rcpp RcppArmadillo sas7bdat survival]; }; - stpp = derive2 { name="stpp"; version="2.0-5"; sha256="1p7dxzfhi5pvva956nyypl7dfdgq3m0cara73hai87qzc342xcf0"; depends=[ggplot2 gridExtra KernSmooth plot3D rgl rpanel spatstat_core spatstat_geom splancs]; }; str2str = derive2 { name="str2str"; version="0.2.1"; sha256="180m261hr0qr3mnm8hbvjbw3q44cr1kfrnq97fvkpypigdycd9z4"; depends=[abind checkmate plyr reshape]; }; strand = derive2 { name="strand"; version="0.2.0"; sha256="0gd9nnbdilvk4bszg77bxilan6qpg1np7c38w1b7j5sr3r30y5in"; depends=[arrow dplyr ggplot2 lubridate Matrix R6 Rglpk rlang tibble tidyr yaml]; }; strap = derive2 { name="strap"; version="1.4"; sha256="0gdvx02w0dv1cq9bb2yvap00lsssklfnqw0mwsgblcy2j6fln7b0"; depends=[ape geoscale]; }; strat = derive2 { name="strat"; version="0.1"; sha256="1axxrp750kjzcgxjdqfscjmryv1mkv4l23zk8k23z8l4ymhd2f5w"; depends=[Hmisc Rcpp RcppArmadillo]; }; stratEst = derive2 { name="stratEst"; version="1.1.4"; sha256="1g764h17sh499p0a5ixs61q8l1hssvi7v4c34i90rdf81l72i0mg"; depends=[Rcpp RcppArmadillo]; }; stratallo = derive2 { name="stratallo"; version="0.1.0"; sha256="0i8vqhf70x25p9z8amka2aaij7r28d83sp0nijim4n225bdfj6sk"; depends=[]; }; - stratamatch = derive2 { name="stratamatch"; version="0.1.7"; sha256="0jpdf042gzvg9mhkicpiacbk7kc1r7pvkmk47ja8nzs6icw90pqy"; depends=[dplyr Hmisc magrittr rlang survival]; }; + stratamatch = derive2 { name="stratamatch"; version="0.1.8"; sha256="04shi4qyzqa2xpmwv8jr273575sdn0jkirilqvdj1hhxkb212zks"; depends=[dplyr Hmisc magrittr rlang survival]; }; stratbr = derive2 { name="stratbr"; version="1.2"; sha256="15vkymmc61yz9szhfhc5663hfyqvh499ahwhr9mv1lhv5bikk0kb"; depends=[Rglpk snowfall stratification]; }; strategicplayers = derive2 { name="strategicplayers"; version="1.0"; sha256="19vijrlzawd701vvk9ig7yhzbirh39dxxcwfz8ywwvxxiaky5x55"; depends=[sna]; }; stratification = derive2 { name="stratification"; version="2.2-6"; sha256="1jlks3g8wpqlpci6v0ryyv93agiabdiklmk6ij0pc5icrfiynbhw"; depends=[]; }; @@ -17345,7 +17419,6 @@ in with self; { subrank = derive2 { name="subrank"; version="0.9.9.1"; sha256="19lgw7248jq6b34i17c7vw208wsvmppni7njswd02i9xdgyjn95z"; depends=[]; }; subsamp = derive2 { name="subsamp"; version="0.1.0"; sha256="1bfz2z2qy1war3id8qr1asygwvwxgf2hhlh075hr6bjdkxz0j0nd"; depends=[]; }; subscore = derive2 { name="subscore"; version="3.1"; sha256="1hb4ci62hxffz09sz0i27jfw7xn0pca87kiq6damz5zi418csa4v"; depends=[boot cocor CTT irtoys ltm sirt]; }; - subscreen = derive2 { name="subscreen"; version="3.0.5"; sha256="0786p2n1a4xjsxnd31w2b079ggdzx9pgn14d5vbngrc6mgjm9hk8"; depends=[bsplus colourpicker data_table dplyr DT jsonlite plyr purrr randomForestSRC shiny shinyjs shinyWidgets]; }; subselect = derive2 { name="subselect"; version="0.15.2"; sha256="0ggpm5bq4ncx4302855s8x1nj0afjizmi81cg6b7xc7rvpirw0fq"; depends=[corpcor ISwR MASS]; }; subsemble = derive2 { name="subsemble"; version="0.1.0"; sha256="125msb0krcdj6jbdvzdl75179ajakb1l0xal45bp38am8w62a6zz"; depends=[SuperLearner]; }; subspace = derive2 { name="subspace"; version="1.0.4"; sha256="0p2j0lnwj3ym1v4xla6r97zjikb8alnibdc690xn9c0z21hmv43v"; depends=[colorspace ggvis rJava stringr]; }; @@ -17356,7 +17429,8 @@ in with self; { sudokuAlt = derive2 { name="sudokuAlt"; version="0.2-1"; sha256="1y3li64xqag2ia8dg7q49jmlb1awl92rz6xa9zsbf0s9jman9wj9"; depends=[magrittr]; }; sugarbag = derive2 { name="sugarbag"; version="0.1.3"; sha256="05j2b9vbhpkfr3xkam9wgm0w4k8blnm1ssf9cd6l5f1y2rrqizsv"; depends=[dplyr geosphere lwgeom progress purrr rlang rmapshaper sf tibble tidyr utf8]; }; sugrrants = derive2 { name="sugrrants"; version="0.2.8"; sha256="08cs74afpkvjh32hlrwbl8sdsi3p0ga4ziw32r9pihs28a060fam"; depends=[dplyr ggplot2 gtable lubridate rlang]; }; - sumFREGAT = derive2 { name="sumFREGAT"; version="1.2.2"; sha256="1phffgscn76xm759jz2fpx82czp91i7q261f6fxlj79kb164njk0"; depends=[GBJ Matrix seqminer]; }; + sumFREGAT = derive2 { name="sumFREGAT"; version="1.2.3"; sha256="191jb3jc0k6ja12955w7r6s0hl6wmwvax9knrb1hd2i5wxaq556i"; depends=[GBJ Matrix seqminer]; }; + sumR = derive2 { name="sumR"; version="0.4.4"; sha256="1cpb59yml038ki2kga3hc1fi4l2d1qa0h0kw0f1bq4vjhjab7wf2"; depends=[matrixStats]; }; sumSome = derive2 { name="sumSome"; version="1.1.0"; sha256="1a70kxvp9d9hn38jnvgk934vwbz4bjb6k4kcngp6rp9gv9h2bh2r"; depends=[ARIbrain pARI Rcpp RNifti]; }; summariser = derive2 { name="summariser"; version="2.3.0"; sha256="0zliqy8dlcr2yy4ky8k68qn256xvpla8fcv7via19y40bmla37ic"; depends=[dplyr]; }; summarytools = derive2 { name="summarytools"; version="1.0.0"; sha256="04qcysfywljnqkcz2b7kzpy0xv3ykkvvb14vnda63z1wvmadyhkn"; depends=[base64enc checkmate dplyr htmltools lubridate magick matrixStats pander pryr rapportools tibble tidyr]; }; @@ -17367,8 +17441,10 @@ in with self; { supclust = derive2 { name="supclust"; version="1.1-1"; sha256="1iar957gdarp1m677fjmph0ll8zsqiy2bzkzx03gv37k56w1acpd"; depends=[class rpart]; }; supcluster = derive2 { name="supcluster"; version="1.0"; sha256="1rkd4bpzzvzbmqaj907pqv53hxcgic0jklbsf5iayf0ra768b5w6"; depends=[gtools mvtnorm]; }; superMDS = derive2 { name="superMDS"; version="1.0.2"; sha256="0jxbwm3izk7bc3bd01ygisn6ihnapg9k5lr6nbkr96d3blpikk04"; depends=[]; }; + superMICE = derive2 { name="superMICE"; version="1.0.1"; sha256="007qw2ff0mnvwcmi7i1x1gpd54l1zxaqjsw9q55bfshm43zs49mj"; depends=[mice SuperLearner]; }; superb = derive2 { name="superb"; version="0.9.7.8"; sha256="0szx5xrqfgganmgbqbdinaq9rljnl8b6l6ym56ysfjq0v6az2s8a"; depends=[foreign ggplot2 lsr MASS plyr psych Rdpack shiny shinyBS stringr]; }; superbiclust = derive2 { name="superbiclust"; version="1.2"; sha256="0mk3d820skp99hl8ilwic2fz90yb9dwy2jq3vfjb726gj1qich3b"; depends=[biclust fabia Matrix]; }; + supercells = derive2 { name="supercells"; version="0.8.2"; sha256="1qr990f4i8v9mahysadbdy5z692fbf7r4j3vcc707qqhhvwijris"; depends=[cpp11 future_apply philentropy sf terra]; }; supercompress = derive2 { name="supercompress"; version="1.1"; sha256="1kz04m37r1g4lx4y0kzjn77p3wra2rq21y93v9llikycsh6vzwp1"; depends=[FNN]; }; superdiag = derive2 { name="superdiag"; version="2.0"; sha256="0zfy9ain6agh276av0p66mks3rap42n8yma0dr6qbc14z3nh8w0m"; depends=[coda]; }; superheat = derive2 { name="superheat"; version="0.1.0"; sha256="01v8s6px1k5fajlm6py3ksr1i853kwwlky1yryzhy3p1cxhwgg83"; depends=[dplyr ggdendro ggplot2 gtable magrittr plyr scales]; }; @@ -17415,7 +17491,7 @@ in with self; { survSens = derive2 { name="survSens"; version="0.1.0"; sha256="1s4s5l31yps93s2zdxpidkdg8kmmwj6vb3zfndmnxvc07arwhvbv"; depends=[directlabels ggplot2 survival]; }; survSpearman = derive2 { name="survSpearman"; version="1.0.0"; sha256="06xric3fwv2rdrbapsawrg288s2sflzrbx1a4yc7lzxzxbsbs619"; depends=[]; }; surveil = derive2 { name="surveil"; version="0.1.1"; sha256="135y4qdkwpb8dv63bybspdynfr0d3sqz0ayjm82nhy3flah2v5ka"; depends=[BH dplyr ggdist ggplot2 gridExtra Rcpp RcppEigen RcppParallel rlang rstan rstantools scales StanHeaders tidybayes tidyr]; }; - surveillance = derive2 { name="surveillance"; version="1.19.1"; sha256="1665n26qs79b3hj4wdp13qjr13w6g32jvbpc4qpcn39bgql6i599"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat spatstat_geom xtable]; }; + surveillance = derive2 { name="surveillance"; version="1.20.0"; sha256="0dbqr43fhg5zdh6wzw6licq6c5qqab710gw5ag45l8j1z3q06x8i"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat_geom xtable]; }; survexp_fr = derive2 { name="survexp.fr"; version="1.0"; sha256="12rjpnih0xld4dg5gl7gwxdxmrdmyzsymm7j05v98ynldd1jkjl8"; depends=[survival]; }; survey = derive2 { name="survey"; version="4.1-1"; sha256="0ljsszybzri531q6xab04r6zq11vchfs7y0snjzk57m3g0b9ms05"; depends=[lattice Matrix minqa mitools numDeriv survival]; }; surveyCV = derive2 { name="surveyCV"; version="0.1.1"; sha256="03pyxav8z223qplsi9srmaf156zgdy3814k5krgskb86bhi0881d"; depends=[magrittr survey]; }; @@ -17426,21 +17502,20 @@ in with self; { surveyplanning = derive2 { name="surveyplanning"; version="4.0"; sha256="19ydgcwyvkhknf4qmlw7j25skcj9a4rd6s8j5n7bdqpljl60zync"; depends=[data_table laeken]; }; surveysd = derive2 { name="surveysd"; version="1.3.0"; sha256="0d5xjdlccqaa1h437rz5zq6a829rpz426m55jgprhfpcps1wfhbk"; depends=[data_table ggplot2 laeken Rcpp]; }; survidm = derive2 { name="survidm"; version="1.3.2"; sha256="0ass7ffpk70ph7dcdjm2f6xyzqaavlkhr1pcij2vcasiy4v1vyiv"; depends=[doParallel doRNG foreach ggplot2 gridExtra KernSmooth np plotly Rcpp survival TPmsm]; }; - survival = derive2 { name="survival"; version="3.2-13"; sha256="0zrikancm9shixvgng89f1610sphlwljczi0fnjbdqn4l85rrarz"; depends=[Matrix]; }; + survival = derive2 { name="survival"; version="3.3-1"; sha256="1isdrcvrzi118xiyigckj9sq1xl4m92180brmpzdqzhcrl2qg1ql"; depends=[Matrix]; }; survival_svb = derive2 { name="survival.svb"; version="0.0-2"; sha256="13lipzn1cnkd5dcg8n69cdghycifiin3jnjvgzsv0g60l1jk0lmp"; depends=[glmnet Rcpp RcppEigen survival]; }; survival666 = derive2 { name="survival666"; version="0.5"; sha256="11vs546lrbxnhpxjmwxhh2hnp6kwcf4hzgigi3x9525hr8n9cy01"; depends=[ggplot2 survival survminer]; }; - survivalAnalysis = derive2 { name="survivalAnalysis"; version="0.2.0"; sha256="1sx7xjqkwc3788j0520kgv602m3gdlmpg1ps9fm8lhsjb8dmvlya"; depends=[cowplot dplyr forcats ggplot2 gridExtra magrittr purrr rlang scales stringr survival survminer tibble tidyr tidytidbits]; }; + survivalAnalysis = derive2 { name="survivalAnalysis"; version="0.3.0"; sha256="0s4cihmjhg94zcbvr7c1pxdjyc0rpbqlw1gni5xkdhqp4lnqmygf"; depends=[cowplot dplyr forcats ggplot2 gridExtra magrittr purrr rlang scales stringr survival survminer tibble tidyr tidytidbits]; }; survivalMPL = derive2 { name="survivalMPL"; version="0.2-1"; sha256="1rskhawhpkzi3laq452kgr1740p6998z7c7p95f2023ymkdm4rxv"; depends=[MASS survival]; }; survivalMPLdc = derive2 { name="survivalMPLdc"; version="0.1.1"; sha256="1wqlzpwm1p7nq19l3d7c93zv6fnn0b1w24kak9zwsgyhar3f5lv9"; depends=[copula matrixcalc splines2 survival]; }; survivalROC = derive2 { name="survivalROC"; version="1.0.3"; sha256="0wnd65ff5w679hxa1zrpfrx9qg47q21pjxppsga6m3h4iq1yfj8l"; depends=[]; }; - survivalmodels = derive2 { name="survivalmodels"; version="0.1.9"; sha256="13plpgvxlljd953kv0krzzs1rfgl4yv9s7s5naplqfzjrapk0j7z"; depends=[Rcpp]; }; + survivalmodels = derive2 { name="survivalmodels"; version="0.1.11"; sha256="0las1appms4j2g7c31yxm49z1aq2ahjgczilh4m3yy0xg5nckyr1"; depends=[Rcpp]; }; survivalsvm = derive2 { name="survivalsvm"; version="0.0.5"; sha256="1b4hrdrqq1z0kfn8vpdwg54388m25df2s6w9i574x3mkxkmkjkga"; depends=[Hmisc kernlab Matrix pracma quadprog survival]; }; - survivoR = derive2 { name="survivoR"; version="0.9.9"; sha256="0cvr4lvfrnlx5cb7zszqq7qx30p5s7w56k2c0nfdkx8b6inrvqbq"; depends=[dplyr ggplot2 magrittr stringr tidyr]; }; + survivoR = derive2 { name="survivoR"; version="0.9.12"; sha256="0mda9zjag453m60c2njzjpifz88q09vjkys0xds8vsdzmi70vjvv"; depends=[dplyr ggplot2 magrittr stringr tidyr]; }; survminer = derive2 { name="survminer"; version="0.4.9"; sha256="0byh0wxdbjfwdrzsnqv4xlmnik6lj0vkkzfxy7lssk8dv5zmj7nz"; depends=[broom dplyr ggplot2 ggpubr ggtext gridExtra magrittr maxstat purrr rlang scales survival survMisc tibble tidyr]; }; survmixer = derive2 { name="survmixer"; version="1.3"; sha256="00s06h7nn8li4d2kn4yzlnj3px1wkpvnx5w73y98cvrcwm0ad71g"; depends=[]; }; survsim = derive2 { name="survsim"; version="1.1.8"; sha256="0gv54bd94a6vdz8li0j409qv7r0h4d681l1p9hj9ilzk7y5bfm70"; depends=[eha statmod]; }; survtmle = derive2 { name="survtmle"; version="1.1.1"; sha256="1l13rvwq4915ij2a55fxdj3b3wkgjca1fbqzcgkjlpzkcn97k1nj"; depends=[dplyr ggplot2 ggsci Matrix plyr speedglm stringr SuperLearner tidyr]; }; - survxai = derive2 { name="survxai"; version="0.2.2"; sha256="09ig561754kjzpay2hy3n62zlk0bgwkjy8vnslrr428r8m1lj0qr"; depends=[breakDown ggplot2 pec prodlim scales survival survminer]; }; susieR = derive2 { name="susieR"; version="0.11.92"; sha256="1wlw41vslbgf6dmppn2hv2mqrnnza5091qzjl0qjaydsp97h5b3b"; depends=[crayon ggplot2 Matrix matrixStats mixsqp reshape]; }; sutteForecastR = derive2 { name="sutteForecastR"; version="0.1"; sha256="13dd0v3l3s7xb1wnpf6qvnvclzab87831z8bsxsq53vpb26xcw1b"; depends=[forecast forecastHybrid fracdiff robets]; }; svDialogs = derive2 { name="svDialogs"; version="1.0.3"; sha256="0j00xjvkwv992ir48czhvyj29rb9vpd243vbyyj2binn0q0qa431"; depends=[rstudioapi svGUI]; }; @@ -17477,7 +17552,7 @@ in with self; { swamp = derive2 { name="swamp"; version="1.5.1"; sha256="1mj6cqrc19p07v051fg6ikhhbccsg2lvz7wjiakaswqqm0269843"; depends=[amap gplots impute MASS]; }; swatches = derive2 { name="swatches"; version="0.5.0"; sha256="1kivscgka8gn44rjj0s5sjan1s04znnyn0nd37a74zaik0hm8zs0"; depends=[colorspace httr pack stringr xml2]; }; swdft = derive2 { name="swdft"; version="1.0.0"; sha256="0529rw8nsl48hwiy741alvrzg5d5q1nhnjshrsfwchm5kdv0igva"; depends=[]; }; - swdpwr = derive2 { name="swdpwr"; version="1.6"; sha256="0gyys5lv8zp6n8ywlnqnzpnmpply32ghhwiwi6rilin08nbd0wm8"; depends=[spatstat_core]; }; + swdpwr = derive2 { name="swdpwr"; version="1.7"; sha256="0mljayrs629d0pxbd9lzzplvs31i33fqb0bfb01ryvwyv0ckwjx9"; depends=[spatstat_random]; }; sweater = derive2 { name="sweater"; version="0.1.4"; sha256="1il3jmcawzy4pjdv0vhril37y5wqlczr0sapsnqgrmcc4szbsba9"; depends=[cli data_table LiblineaR proxy purrr quanteda Rcpp]; }; sweep = derive2 { name="sweep"; version="0.2.3"; sha256="1705mcp9p5h50ifqjjwx61z5wl5izv889nxcgdkx1i0dlcr61l2a"; depends=[broom dplyr forecast lubridate rlang tibble tidyr timetk]; }; sweidnumbr = derive2 { name="sweidnumbr"; version="1.4.2"; sha256="0zzjvwd60w9b5ybsb72aqa42sx6al4ymr591j3zryxgpl6rms5rh"; depends=[checkmate lubridate stringr]; }; @@ -17532,11 +17607,11 @@ in with self; { sysid = derive2 { name="sysid"; version="1.0.4"; sha256="0fr9gf5yjin3zvz850z4r4pqc1r4mwx8d46sl64i4csdm9qnqagy"; depends=[bitops ggplot2 polynom reshape2 signal tframe zoo]; }; syslognet = derive2 { name="syslognet"; version="0.1.2.1"; sha256="0nwni2mn7w43pfasqa2dwy1l6r0ymlkwlsyd5q47fajdr8v1ir0q"; depends=[]; }; systemfit = derive2 { name="systemfit"; version="1.1-24"; sha256="180ah91i98gjswpbkkdjgnc2c9rz3pl5bw035iks92nd5vl6w5wz"; depends=[car lmtest MASS Matrix sandwich]; }; - systemfonts = derive2 { name="systemfonts"; version="1.0.3"; sha256="1fmv1ni77ncz6rrm4iv8a7l6pbqnk2ri0yzad2bs943gxbarjz34"; depends=[cpp11]; }; + systemfonts = derive2 { name="systemfonts"; version="1.0.4"; sha256="1h44bal845jp7ya8i7ff1kz1n3wklkb00jk6hb9lgwa2p5snqxpg"; depends=[cpp11]; }; systemicrisk = derive2 { name="systemicrisk"; version="0.4.2"; sha256="021ypw9fag5kmk2q041pj2jfzgfg640yda7wvh0yzdmg73p6fvsw"; depends=[lpSolve Rcpp]; }; syt = derive2 { name="syt"; version="0.2.0"; sha256="1pfl3d6laa075z88fqgjnrsn21lgjsak0bjdws09b9knc0ifgfsz"; depends=[Matrix partitions]; }; syuzhet = derive2 { name="syuzhet"; version="1.0.6"; sha256="16iccqdbw02iw82nah6kwz3gwfghi864j2y698n4b9dyc386ijzv"; depends=[dplyr dtt NLP rlang textshape tidyr zoo]; }; - tLagPropOdds = derive2 { name="tLagPropOdds"; version="1.6"; sha256="0hgkg359rvinlijhd58x4236v7cmf9hmfn8ngb1i4f95s9v3v7ch"; depends=[dplyr R_utils survival]; }; + tLagPropOdds = derive2 { name="tLagPropOdds"; version="1.7"; sha256="1wsjpn9n1bnhas9bl1kaas9dnmifr7p4g12ys19pvic3gj0867kb"; depends=[dplyr R_utils survival]; }; tRnslate = derive2 { name="tRnslate"; version="0.0.3"; sha256="0sm0cqxylsxmnhqs1c8w81d6q2sj7nmm86mds59kiyspy9m67sbc"; depends=[]; }; tRophicPosition = derive2 { name="tRophicPosition"; version="0.7.7"; sha256="1j06rc5s6jpz8i116m98ygc75sx6lk8jd9gw6fb8q342mbbmqh8h"; depends=[coda data_table ggplot2 gridExtra hdrcde MCMCglmm plyr rjags]; }; tTOlr = derive2 { name="tTOlr"; version="0.2"; sha256="1fk33vp6y65mls1iczjf63wzj1rl1knbdcbd4rnqqfdcqhibb3p3"; depends=[lattice latticeExtra]; }; @@ -17553,12 +17628,13 @@ in with self; { tableExtra = derive2 { name="tableExtra"; version="1.0.1"; sha256="1rbcxd3rjhvcpayj6d7mh30vkbc7g4mv4qa7552xz3x1wny0n4mm"; depends=[gtable]; }; tableHTML = derive2 { name="tableHTML"; version="2.1.0"; sha256="01bffjqi2qs66w67l5nc0imqdcaf4cky930srkd2wmvvawv85kwc"; depends=[htmltools jpeg magrittr png shiny webshot]; }; tableMatrix = derive2 { name="tableMatrix"; version="0.82.0"; sha256="1sskijhbqakamrk2rv7v5zpjsdi8jw0jl2z96l0vhsvsiq0cz1c8"; depends=[data_table]; }; + tableeasy = derive2 { name="tableeasy"; version="1.1.1"; sha256="1xvhxgdpx0a4fk4fv59i1kxplzzqyzjd3ha93l5wjadkl9hijwr9"; depends=[lmtest mgcv nortest survival tableone]; }; tableone = derive2 { name="tableone"; version="0.13.0"; sha256="0ihk29gcbqvvif2y8aalgnpq8y87irrp8z6ik4iaxh2xb6ksawqw"; depends=[e1071 gmodels labelled MASS nlme survey zoo]; }; tablerDash = derive2 { name="tablerDash"; version="0.1.0"; sha256="1mnp6lxa7d669r325aynq1n3f35r9sy4v1fvdh4cymbf33s8mkmm"; depends=[htmltools knitr shiny]; }; tables = derive2 { name="tables"; version="0.9.6"; sha256="1y0gnqd2q0gn1dr2nxdlsvyl4g5jnj9y9lx18bhvhrfzb5038j5w"; depends=[htmltools knitr]; }; tableschema_r = derive2 { name="tableschema.r"; version="1.1.1"; sha256="14cnbijxdhf7qbsiqbk8p516mfh9bgdbcg32vn5pycsp30k78b2h"; depends=[config future httr iterators jsonlite jsonvalidate lubridate purrr R6 RCurl rlist stringr urltools]; }; tablesgg = derive2 { name="tablesgg"; version="0.8-1"; sha256="0vkl9386qnalr5d0libqs2ihszggs0qyx6ffyjn8j8ab3kczzxhr"; depends=[ggplot2 tables]; }; - tablet = derive2 { name="tablet"; version="0.4.8"; sha256="17s13srv58jyxchcy44dnl1p7zbsy0ah2sx3im2cjs6n6sw3yxwl"; depends=[dplyr DT kableExtra rlang spork tidyr]; }; + tablet = derive2 { name="tablet"; version="0.4.9"; sha256="1xn4iyah82y1y0mrg0c7sq7g69b0mah6bxrmn4iy7pxx4by54wc0"; depends=[dplyr DT kableExtra rlang spork tidyr]; }; tabnet = derive2 { name="tabnet"; version="0.3.0"; sha256="04m8bg1glnhxb2pjcxnwlcwzbxvk0bskz00dkd4lyvgsq74xwmvi"; depends=[coro glue hardhat magrittr progress rlang tibble torch vctrs]; }; tabr = derive2 { name="tabr"; version="0.4.5"; sha256="1nkzbqy9nb6pd895glld009vmry5rnhd7h9q31s8xh97kwlwk9c2"; depends=[crayon dplyr ggplot2 magrittr purrr tibble tidyr]; }; tabshiftr = derive2 { name="tabshiftr"; version="0.3.2"; sha256="09fmz9p6ky1z45f4vyp5cq267cijhd5q9aqwwk7r830jhwnm9547"; depends=[checkmate crayon dplyr magrittr purrr rlang stringr testthat tibble tidyr tidyselect]; }; @@ -17567,6 +17643,7 @@ in with self; { tabularMLC = derive2 { name="tabularMLC"; version="0.0.3"; sha256="1gppzbf780ci4vrvy7rd3xa0bvwxca5f05a9xk194xv913vyd440"; depends=[Rcpp RcppArmadillo]; }; tabularaster = derive2 { name="tabularaster"; version="0.7.0"; sha256="061nc82svcz37lvwsx549rn6s2q6x75wjs0j9k8zcvlzr5wyyfgi"; depends=[dplyr fasterize magrittr raster silicate spatstat_geom tibble]; }; tabularmaps = derive2 { name="tabularmaps"; version="0.1.0"; sha256="07i76n2fpl2ma6jl3zdbay0zmmaaxrxhv1368xm2d575br42nri4"; depends=[ggforce ggplot2 purrr rlang]; }; + tabulate = derive2 { name="tabulate"; version="0.1.0"; sha256="1x5rf8shd3jxa7k8p8ak5a6c2fmxv476is5vlrg1fsg6f964h01v"; depends=[cli magrittr Rcpp rlang]; }; tabulator = derive2 { name="tabulator"; version="1.0.0"; sha256="1dylmw5prwir3qj13lxkvlzq6j7r23y3gz1g0bjyanb0xmzgxn4k"; depends=[assertthat data_table dplyr magrittr purrr rlang stringr tibble tidyr]; }; tabulog = derive2 { name="tabulog"; version="0.1.1"; sha256="0n6qjd7kmvxx5na71f358pw3bbwa69vh8qjkrs5mkb3izxabcq67"; depends=[yaml]; }; tabxplor = derive2 { name="tabxplor"; version="1.0.2"; sha256="0gwnw4psgz5byfrpvm3s5bfc13fwmw0wh8fafrr8rpbwm8gy33fy"; depends=[cli crayon DescTools dplyr forcats kableExtra magrittr pillar purrr rlang stringi stringr tibble tidyr tidyselect vctrs]; }; @@ -17593,12 +17670,12 @@ in with self; { tau = derive2 { name="tau"; version="0.0-24"; sha256="1q8pd7m6rd0899c44plxns5yydifhsccyb51glgw07ni5v4rz3gh"; depends=[]; }; tauturri = derive2 { name="tauturri"; version="0.3.0"; sha256="014301f5mzy6vblqzb61bxjv46kdynmmrxjpxyvk01w1k8wkwfcn"; depends=[httr magrittr plyr purrr tibble]; }; taxa = derive2 { name="taxa"; version="0.4.0"; sha256="1clvq69z68xidv5m1s8vmavh8l6bv6dpb9iln7axb5jbj0iqx1xj"; depends=[cli crayon dplyr jsonlite knitr lazyeval magrittr pillar R6 rlang stringr tibble tidyr vctrs viridisLite]; }; - taxadb = derive2 { name="taxadb"; version="0.1.3"; sha256="1ai2p58h75170wh8701dpyjb9cx5lfzx5xpq33l4w8pybh24zaab"; depends=[arkdb contentid curl DBI dbplyr dplyr duckdb jsonlite magrittr memoise progress rappdirs readr rlang RSQLite stringi tibble]; }; + taxadb = derive2 { name="taxadb"; version="0.1.4"; sha256="00cbbma9wahm6ka75kzpfqgns0cr2z2ri6bpp919icwkvi5rpbmr"; depends=[arkdb contentid curl DBI dbplyr dplyr duckdb jsonlite magrittr progress R_utils rappdirs readr rlang stringi tibble]; }; taxalight = derive2 { name="taxalight"; version="0.1.5"; sha256="035jzz1dk1icxs9mbd6q091ljf1lalr0wwbcz6a90avwyqphjjx3"; depends=[contentid thor]; }; taxize = derive2 { name="taxize"; version="0.9.99"; sha256="0738fzckbwkgf21vranxhcfjq487rp3kjdnz2gfvdd1dm21jfp8s"; depends=[ape bold cli conditionz crayon crul data_table foreach jsonlite natserv phangorn R6 ritis rotl rredlist tibble wikitaxa worrms xml2 zoo]; }; taxizedb = derive2 { name="taxizedb"; version="0.3.0"; sha256="1d7wz6df624263myq4rlvr3mhzhhhdglrrs7f44j201z4f536a2z"; depends=[curl DBI dbplyr dplyr hoardr magrittr readr rlang RSQLite tibble]; }; taxlist = derive2 { name="taxlist"; version="0.2.2"; sha256="0xdl7aw3ifn4v2wclk38iyayy9r71cx5diir1m4pws986qfdddb4"; depends=[foreign stringdist taxa taxize vegdata]; }; - taxonbridge = derive2 { name="taxonbridge"; version="1.0.1"; sha256="1miqh3g75199w65k9f6gbkpdylms2gr43g9ncv6145nbf6f5cqk6"; depends=[dplyr ggplot2 purrr rje vroom]; }; + taxonbridge = derive2 { name="taxonbridge"; version="1.0.4"; sha256="18n87w3nf3qb5f1ci0bcq7mji14mxh5cx6klb6qw4g8qzr35cznk"; depends=[dplyr ggplot2 purrr rje vroom withr]; }; taxonomizr = derive2 { name="taxonomizr"; version="0.8.0"; sha256="0i1xn5x8c555hdlnfbhpga4vzn1l6kcqjgcw472y8yg0n7s2birx"; depends=[curl data_table R_utils RSQLite]; }; taxotools = derive2 { name="taxotools"; version="0.0.79"; sha256="1q69dh1ifa7mc8y3bdgvvg97s9prflh6mczqr4clxnsysd3xhafs"; depends=[plyr sqldf stringdist stringr taxize wikitaxa]; }; tayloRswift = derive2 { name="tayloRswift"; version="0.1.0"; sha256="1gr179hzqxih49v214dqawfhsbsahhyj1lbj77vqv00zq1siigpl"; depends=[]; }; @@ -17616,7 +17693,7 @@ in with self; { tcl = derive2 { name="tcl"; version="0.1.1"; sha256="01klrzvw7vc0iwqpmcikgqm8jx3g7536r5f8gb6vwcik912maxnl"; depends=[colorspace eRm lattice ltm MASS Matrix numDeriv psych psychotools]; }; tcltk2 = derive2 { name="tcltk2"; version="1.2-11"; sha256="1ibxld379600xx7kiqq3fck083s8psry12859980218rnzikl65d"; depends=[]; }; tclust = derive2 { name="tclust"; version="1.4-2"; sha256="1nb5iky4kc832627jf28lzj19wrvgwg5da6fyl3kyf0npmyx1p4m"; depends=[]; }; - tcpl = derive2 { name="tcpl"; version="2.0.2"; sha256="0xic4jy8ldawmkvvwckiyy57ai5wif9yn7hyfndbxr6mvjl3rbbc"; depends=[data_table DBI numDeriv RColorBrewer RMySQL sqldf]; }; + tcpl = derive2 { name="tcpl"; version="2.1.0"; sha256="1rp5i3va11l12q37hl1v26k21i88giganyzycb6x8flank1myjwr"; depends=[data_table DBI numDeriv RColorBrewer RMariaDB sqldf]; }; tcplfit2 = derive2 { name="tcplfit2"; version="0.1.3"; sha256="1y69z27mgphcj5qkhlpgv0as59aralimf7mbfrdz5n6nkqfj5krr"; depends=[future future_apply numDeriv RColorBrewer stringr]; }; tcsinvest = derive2 { name="tcsinvest"; version="0.1.1"; sha256="1harmb5ni70k241aq1vww5w7fmjqmlwd6nfma2xa44f3hj7nrf52"; depends=[data_table httr jsonlite websocket]; }; td = derive2 { name="td"; version="0.0.6"; sha256="1zycwnl7n03jw76n8qrk2zhgnakj6npid25pflj6dnmbjc47ih32"; depends=[RcppSimdJson]; }; @@ -17637,9 +17714,10 @@ in with self; { telegram = derive2 { name="telegram"; version="0.6.0"; sha256="02wwa115f0vz2d9y4nf01397hjkpc3cv2gdl47snrajrm41gji7y"; depends=[curl httr jsonlite R6]; }; telegram_bot = derive2 { name="telegram.bot"; version="2.4.0"; sha256="1bvfnr6k0zxdawrf63yh8wj9hcgq1xvy791xbqhiy0isaa86yfw9"; depends=[curl httr jsonlite R6]; }; telemac = derive2 { name="telemac"; version="0.1.1"; sha256="12wkhya49yi0qqm73sizgnf6r5lkssg07wc6pq9iychjjd0cxfly"; depends=[data_table dplyr fs gstat magrittr purrr raster Rcpp RcppArmadillo rlang sf sp stringr sys tidyr tidyselect]; }; - tempR = derive2 { name="tempR"; version="0.9.9.19"; sha256="0gr60hlah6lngkak158xqxbdavgad3kyq4casc686f52hz1llwic"; depends=[]; }; + tempR = derive2 { name="tempR"; version="0.9.9.20"; sha256="12wnb9w5ql4q9n0gppjaxa66rrmdp0mklrhpp1chf9qr9wyzjkxi"; depends=[]; }; tempdisagg = derive2 { name="tempdisagg"; version="1.0"; sha256="1n1ng7xki4syy305gsclz7wrqb48vkjw3la0vxs975apv1mc4pzr"; depends=[]; }; temperatureresponse = derive2 { name="temperatureresponse"; version="0.2"; sha256="1id3wjzfs132hj8cm7gpf105qaay9dff07ixah9rmn5sk6si0zmq"; depends=[AICcmodavg broom dplyr minpack_lm numDeriv rootSolve]; }; + templateICAr = derive2 { name="templateICAr"; version="0.3.1"; sha256="1786anjsw2qnbpq6c0xwzngm6qzi84475xms5mqcmmf8vwsa0hbd"; depends=[abind ciftiTools excursions fMRIscrub ica Matrix matrixStats pesel SQUAREM]; }; templates = derive2 { name="templates"; version="0.3.0"; sha256="0xnzj3cvhw1r7zfqaijbfdyclka61jwixcdh05a5z9qwgv0076sh"; depends=[dat magrittr stringr]; }; tempoR = derive2 { name="tempoR"; version="1.0.4.4"; sha256="0gn16j496833pvbjaf6wx26z9ilwssjp947mcyk6n2jb33x93rr2"; depends=[doParallel foreach pls]; }; tenispolaR = derive2 { name="tenispolaR"; version="0.1.4"; sha256="0xpp1hi3xnkg55aixgy2bp5476i503h8gsiss9x7f15274kx0d7s"; depends=[stringr]; }; @@ -17648,19 +17726,19 @@ in with self; { tensorBF = derive2 { name="tensorBF"; version="1.0.2"; sha256="1dw1a6xqcsl4isbzbfiplgqq5nak5n9ffzm23mzzmkh1r1a8kl1y"; depends=[tensor]; }; tensorBSS = derive2 { name="tensorBSS"; version="0.3.8"; sha256="1chgkdshjpxzy0cxkgjzpr5k4v2hyad1vchrxyqhsj9isfic2581"; depends=[abind fICA ggplot2 ICtest JADE Rcpp RcppArmadillo tensor tsBSS]; }; tensorTS = derive2 { name="tensorTS"; version="0.1.2"; sha256="0hwskjw611vlrd3q6yypgk6g8p704yih6m9869hjyn3x0rf2kw7n"; depends=[abind expm MASS Matrix pracma rTensor tensor]; }; - tensorflow = derive2 { name="tensorflow"; version="2.7.0"; sha256="0xgm8jb1hl8564vviqys3aqwzvfbh0d43m154cj07j9spdz306ng"; depends=[config processx reticulate rstudioapi tfautograph tfruns yaml]; }; + tensorflow = derive2 { name="tensorflow"; version="2.8.0"; sha256="19ayjvlxmgjais0kx6fj9an1h1i8mh4c9dhah7dj6390p53pgz93"; depends=[config processx reticulate rstudioapi tfautograph tfruns yaml]; }; tensorr = derive2 { name="tensorr"; version="0.1.1"; sha256="18xdvp328h96jn8y1iayxh7cyz2s8j5nn43nq18pyaxq271hkfyh"; depends=[assertive_base assertive_properties assertive_types Matrix purrr]; }; tensorregress = derive2 { name="tensorregress"; version="4.0"; sha256="0pb512v3gahgv3qc31i5v2jg8wixi6ps3p920sq5dgpfrig9hg2q"; depends=[MASS pracma speedglm]; }; tensorsparse = derive2 { name="tensorsparse"; version="3.0"; sha256="0xx003nh5bi87cbsqb7ikpcs4yhjhphh7pybzzas44qkwbn4fn1k"; depends=[]; }; tensr = derive2 { name="tensr"; version="1.0.1"; sha256="1z6b3ra7fgn88mxbhsq65x3frj5j7p17n119s9kbw7sg9y633vfx"; depends=[assertthat]; }; tergm = derive2 { name="tergm"; version="4.0.2"; sha256="0r1afidhfwmfkihcmry37j9imq26b55m84nxgv3r03y9cq8xdcas"; depends=[coda ergm MASS network networkDynamic nlme purrr robustbase statnet_common]; }; tergmLite = derive2 { name="tergmLite"; version="2.5.5"; sha256="0sg19ppvmy1wfqbvchn98maxiqzaa67yz64g4mhyxviksh1yzwxd"; depends=[ergm network networkDynamic Rcpp statnet_common tergm tibble]; }; - term = derive2 { name="term"; version="0.3.3"; sha256="04zl9hb3kgji5y3lq7d1pa4fh7mr0kxxjx1pmyj3dla8mqjxv22r"; depends=[chk extras lifecycle purrr rlang universals vctrs]; }; + term = derive2 { name="term"; version="0.3.4"; sha256="0pa275bzqbi0y58qy6pn5n289w8l5pndmr94sm64al2xdrl4hddl"; depends=[chk extras lifecycle purrr rlang universals vctrs]; }; ternvis = derive2 { name="ternvis"; version="1.2"; sha256="057i6i3ygxrin0npc18gsg3dpdldzafyb5sr6lix5mhy6b09lkxf"; depends=[dichromat maps quadprog]; }; - terra = derive2 { name="terra"; version="1.5-17"; sha256="1rz6dd78i3aq82vl9q4fw17y5cxj2pcmra5mlhb0ca1df78mgb77"; depends=[Rcpp]; }; + terra = derive2 { name="terra"; version="1.5-21"; sha256="0gzl0ka19jjw0dmaghjk2sgwi78kkz4w3rlfkym62rdarhlfj7h9"; depends=[Rcpp]; }; terrainmeshr = derive2 { name="terrainmeshr"; version="0.1.0"; sha256="1xab6wzq2izzdvsss1rlgp5m3cn45naxhymq6cglipj0fd792jbr"; depends=[Rcpp]; }; - terrainr = derive2 { name="terrainr"; version="0.6.0"; sha256="16wwvhxa56qcm8jfni9q7fg1iv7h56z71hvckivi07n4dkgml2ci"; depends=[base64enc ggplot2 httr magick png raster rgdal sf units]; }; - tessellation = derive2 { name="tessellation"; version="1.0.0"; sha256="1v6c3k8724qlrijmn56xjlkryb2f5kp67h77h5cq6av5qnf3jyv0"; depends=[cxhull english hash R6 randomcoloR rgl scales sets]; }; + terrainr = derive2 { name="terrainr"; version="0.6.1"; sha256="0xxvd536zgnmgb6p9fvkxaga4mqgb7qzd69xp8zm77a380j8dk05"; depends=[base64enc ggplot2 httr magick png raster rgdal sf units]; }; + tessellation = derive2 { name="tessellation"; version="2.0.0"; sha256="1pgjaisykyh0096ilfxhp5hlh6p82lsi0p184jfig84afcihn9p8"; depends=[cxhull english hash interp R6 randomcoloR rgl Rvcg scales sets]; }; tesseract = derive2 { name="tesseract"; version="5.0.0"; sha256="1xdwjm3bing15ljdicl20g88ymmd0bbjmlbah5hzvws5b656iicn"; depends=[curl digest pdftools rappdirs Rcpp]; }; testDriveR = derive2 { name="testDriveR"; version="0.5.1"; sha256="0wjdqvsyv33fsg1lljp9m0bhz38mpfgpgickgj4zdspc9x6lbnv6"; depends=[]; }; testarguments = derive2 { name="testarguments"; version="0.0.1"; sha256="1x77z0pljfi6z4bs6db3zsjbpyypsd3jbd0ykh4pq07595phh8x5"; depends=[dplyr ggplot2 magrittr plyr reshape2]; }; @@ -17678,8 +17756,8 @@ in with self; { tetragon = derive2 { name="tetragon"; version="1.0.0"; sha256="17n6g262f19bvxh0i35xcpf9qbdzaff80vvmx8vsijjiniw2hrbq"; depends=[abind ggplot2 greybox imputeTS lubridate modeest moments narray philentropy purrr readr scales stringr tictoc]; }; texPreview = derive2 { name="texPreview"; version="1.5"; sha256="11njmn29qq50iff30in9i0yfi6ypnpqsx3317smr9fiw3hgda3c5"; depends=[base64enc details fs htmltools knitr lifecycle magick magrittr rematch2 rstudioapi svgPanZoom whisker xml2]; }; texmex = derive2 { name="texmex"; version="2.4.8"; sha256="115x7j2kvifzsrmh8zy6xymm1p01sxk4c26zdmi0p51bsgvs46ih"; depends=[ggplot2 mvtnorm Rcpp]; }; - texreg = derive2 { name="texreg"; version="1.37.5"; sha256="0cb3kvxfi9k9g958fkb73cgqdxx3h9bz2cnaakic4wgrkv27mk2c"; depends=[httr]; }; - text = derive2 { name="text"; version="0.9.10"; sha256="1ramsv2pbg57yyxp5qjkls82gl5icda6f5116hr0w5s0w3jpajmj"; depends=[cowplot dplyr furrr future ggplot2 ggrepel magrittr parsnip purrr recipes reticulate rlang rsample stringr tibble tidyr tokenizers tune workflows yardstick]; }; + texreg = derive2 { name="texreg"; version="1.38.5"; sha256="1d0syszvxhxiplwsbq12s6rw4lrrbn4w3mmljs7vkw8p4gd8fp78"; depends=[httr]; }; + text = derive2 { name="text"; version="0.9.50"; sha256="0s81j3kbrzxcfbwxnk5hbdqlb3pjmlxjswjy8pj7s13h5gnsm1bw"; depends=[cowplot dplyr furrr future ggplot2 ggrepel magrittr overlapping parsnip purrr recipes reticulate rlang rsample stringi tibble tidyr tune workflows yardstick]; }; text_alignment = derive2 { name="text.alignment"; version="0.1.2"; sha256="0qjnzdm7savn2jqmm23cd3rszyihnhb5rfnygc36ccfd15vav79j"; depends=[Rcpp]; }; text2map = derive2 { name="text2map"; version="0.1.3"; sha256="0p8knb450rz79531cb9kkc4rlns3p7qrq212jss2jcwxfnl640dv"; depends=[doParallel dplyr fastmatch foreach igraph kit magrittr Matrix mlpack qgraph rlang stringi stringr text2vec tibble]; }; text2sdg = derive2 { name="text2sdg"; version="0.1.2"; sha256="1yq46jh11jymiqb4dmbvl1w35jq9ww6v3kra8px013qfdxvdnvlg"; depends=[corpustools dplyr ggplot2 magrittr stringr tibble tidyr]; }; @@ -17730,20 +17808,21 @@ in with self; { tgp = derive2 { name="tgp"; version="2.4-17"; sha256="0hl9nv2nayhq9jiy6lrgn702lb95allqiq8v221rj9pzxpc1230c"; depends=[maptree]; }; tgram = derive2 { name="tgram"; version="0.2-3"; sha256="0vlnry8drq3fqfy8dk50pcwcx9dj657kx6s19fs2b6acigkr4g7w"; depends=[zoo]; }; tgstat = derive2 { name="tgstat"; version="2.3.16"; sha256="12apvcpdwfng0sp2v80xvpk7ynbadi2lvbfk14hlcsvw8h3rb268"; depends=[]; }; + tgver = derive2 { name="tgver"; version="0.2.0"; sha256="0p8pm47kpajwhhk3a96rl2nfj69qqvbw5qwp1in3qv11wxv4cbyj"; depends=[callr geojsonsf plumber]; }; thankr = derive2 { name="thankr"; version="1.0.0"; sha256="089ikp85d5ia6a1qzmw8dkgcmz628cibmwfzcpk7m3ii8acxq91w"; depends=[]; }; theiaR = derive2 { name="theiaR"; version="0.4.0"; sha256="07m532r67cil2ya2w9lfhycrm8n0ga0r3x7jwbp5jbd83hw4l1p6"; depends=[askpass httr R6 raster XML]; }; thematic = derive2 { name="thematic"; version="0.1.2.1"; sha256="1hr9373256n1rya3l2z2sqwfifypsh6wrs2s27aqchh9sm0blkmy"; depends=[farver ggplot2 rappdirs rlang rstudioapi scales]; }; themis = derive2 { name="themis"; version="0.1.4"; sha256="0zc7djygyiy1sjgvbznb6nqcglfnbybxaz5frphns92m7smqy0l9"; depends=[dplyr generics purrr RANN recipes rlang ROSE tibble unbalanced withr]; }; thermocouple = derive2 { name="thermocouple"; version="1.0.2"; sha256="1rlvhw3i83iq1vibli84gj67d98whvgkxafwpmisva1m4s1bmij4"; depends=[]; }; thestats = derive2 { name="thestats"; version="0.1.0"; sha256="15y6ibw7i4nrm8990yirqf64gl1x4l7lj3ajk19vi6ccxw82x2gl"; depends=[dplyr]; }; - thewitcher = derive2 { name="thewitcher"; version="1.0.0"; sha256="1xwmmgraaqhwmar1782bm3s5xx6vq6bc5xkclmrzvvy09il1y10v"; depends=[dplyr ggplot2 gridExtra magrittr MASS readr tidyverse usethis]; }; + thewitcher = derive2 { name="thewitcher"; version="1.0.1"; sha256="140f0insb5gqrfdaq5cnzj6bl0akbif57jnyy7ai3rb2rwy9n2nv"; depends=[dplyr ggplot2 gridExtra magrittr MASS readr tidyverse usethis]; }; thgenetics = derive2 { name="thgenetics"; version="0.4-2"; sha256="1314gry3xs9v4jy13g08q16qy4ax3s0bc7d74gi0wbpkgdrk3lql"; depends=[]; }; - thickmatch = derive2 { name="thickmatch"; version="0.3.1"; sha256="0q7wpilbk8jm3q7m5hb114jpbv4ri1745v9sbdf222l6ymds6pia"; depends=[DiPs MASS plyr rcbalance]; }; thief = derive2 { name="thief"; version="0.3"; sha256="12ymkkisg5p0g1gmvlczhp4dc7mirjg55fqqmz2d90673vlg6rfq"; depends=[forecast ggplot2 hts]; }; thinkr = derive2 { name="thinkr"; version="0.15"; sha256="17mfw067advk8vxlz8x0w0vww3718zp2fcs00sca8ivlh8yh9fcg"; depends=[assertthat crayon devtools dplyr ggplot2 lazyeval lubridate magrittr officer purrr readr rvg stringi stringr tidyr]; }; this_path = derive2 { name="this.path"; version="0.5.0"; sha256="0fcmdkwrg4gmss2q2xkwrlr6wy5v0qzqzb5l890adihmqvlhb8ra"; depends=[]; }; thor = derive2 { name="thor"; version="1.1.2"; sha256="0r4kgzbydjb7z0j808g5zdkx5wmbqncqg453bqm4ylafpj5z79kv"; depends=[R6 storr]; }; thorn = derive2 { name="thorn"; version="0.2.0"; sha256="0sybjqwv9al5khkhhc7khbgr7n2vy6aggarh9n75mxpa8hn7j2qr"; depends=[htmlwidgets]; }; + thredds = derive2 { name="thredds"; version="0.1-1"; sha256="1ssx9sm55ycdny36nlydxqylfr0d51hyj3rgsmnk5d8wyhivnxb9"; depends=[httr magrittr R6 rlang xml2]; }; threeBrain = derive2 { name="threeBrain"; version="0.2.4"; sha256="1pgfphw9xwn23rjzylh3crw10sj86qc7ihh4kzpr758w1b84mfd2"; depends=[digest dipsaus freesurferformats gifti htmlwidgets jsonlite oro_nifti R6 shiny stringr xml2]; }; threeboost = derive2 { name="threeboost"; version="1.1"; sha256="033vwn42ys81w6z90w5ii41xfihjilk61vdnsgap269l9l0c8gmn"; depends=[Matrix]; }; threejs = derive2 { name="threejs"; version="0.3.3"; sha256="1711h351nzxfkbbdwvfzyhciyvi9c6wx3jq1g97lzcqgnb45kivn"; depends=[base64enc crosstalk htmlwidgets igraph]; }; @@ -17754,27 +17833,29 @@ in with self; { threshr = derive2 { name="threshr"; version="1.0.3"; sha256="1vs2jfvh1pjzyfz1s4w92sw13yz2nhc28gc3iyqz8a82rrdm4mdq"; depends=[revdbayes rust]; }; thriftr = derive2 { name="thriftr"; version="1.1.5"; sha256="1s8fn0imja6gh5bb0h2g1pmvkwk5v0dmpml9yvcd5dhz9lxy6vdj"; depends=[R6 rly stringi]; }; thsls = derive2 { name="thsls"; version="0.1"; sha256="18z7apskydkg7iqrs2hgnzby578qsvyd73wx8v4z3aa338lssdi7"; depends=[Formula]; }; + thunder = derive2 { name="thunder"; version="0.3.0"; sha256="0lzaab5acgy4s7qkq10l0yfdgrsya74757a025j205jin4m49hai"; depends=[aiRthermo climate dplyr Rcpp]; }; thurstonianIRT = derive2 { name="thurstonianIRT"; version="0.12.1"; sha256="1qac1kg441x6fx3nxlhj1w1q7b3isivw6hzy7np3g1ics3kxpw8b"; depends=[BH dplyr knitr lavaan magrittr MplusAutomation mvtnorm Rcpp RcppEigen RcppParallel rlang rstan rstantools StanHeaders tibble tidyr]; }; tibble = derive2 { name="tibble"; version="3.1.6"; sha256="14l2i6ri3v5y0h8g0ahc4kz0pdqsp5yabxk2w8wavss6y44xjcsv"; depends=[ellipsis fansi lifecycle magrittr pillar pkgconfig rlang vctrs]; }; tibbletime = derive2 { name="tibbletime"; version="0.1.6"; sha256="0pfph4pyjxkxrir5ca1sh7xz07dylqnq40w0qyqiyaj5s23mbbmb"; depends=[assertthat dplyr glue hms lifecycle lubridate purrr Rcpp rlang tibble tidyselect vctrs zoo]; }; tibblify = derive2 { name="tibblify"; version="0.1.0"; sha256="0mdi9x36nrlcbchl7b2rlf4j1k0y6c7657aznm7xa0396ciij5fk"; depends=[crayon purrr rlang tibble vctrs]; }; tictactoe = derive2 { name="tictactoe"; version="0.2.2"; sha256="1fx8plj5zr04xwk5hfj3zqhcknidxlzya2q14cf0m3y33a86lx42"; depends=[hash]; }; tictoc = derive2 { name="tictoc"; version="1.0.1"; sha256="0197f540fkcxx5blx9jjnbvwgdnsdv55znmvgdizdp8pqhsib6m0"; depends=[]; }; - tidyBdE = derive2 { name="tidyBdE"; version="0.2.3"; sha256="1b55d5i3fcy9bhijxhmwrknla7xlzmqzrawdzzd660365rdbgkm4"; depends=[dplyr ggplot2 readr scales tibble]; }; + tidyBdE = derive2 { name="tidyBdE"; version="0.2.4"; sha256="0qijyml3z38wq85vjfblgm85gvgmaz0vgffg1fiqjfgx78blk2f0"; depends=[dplyr ggplot2 readr scales tibble]; }; tidyCpp = derive2 { name="tidyCpp"; version="0.0.6"; sha256="1w6fr4q137ar6557a8x1jpmfmlsga59621jwq0sf37bnn535i4gw"; depends=[]; }; + tidyEmoji = derive2 { name="tidyEmoji"; version="0.1.0"; sha256="03amap4lik63nqdznncg8ymw74avmrhci36gy8ckwwskrn9gqw93"; depends=[dplyr emoji purrr stringr tibble tidyr]; }; tidyHeatmap = derive2 { name="tidyHeatmap"; version="1.6.0"; sha256="15ih0pjm2d5xdqdyfy9mwg0yag1gvdmqdl70a1m3j46qwj5z6chg"; depends=[circlize ComplexHeatmap dendextend dplyr lifecycle magrittr patchwork purrr RColorBrewer rlang tibble tidyr viridis]; }; tidyLPA = derive2 { name="tidyLPA"; version="1.1.0"; sha256="1lyd8cx90j49bm65330i57jyimiid75c2pvnzk7dcp6mbmglvimz"; depends=[dplyr ggplot2 gtable mclust mix MplusAutomation tibble]; }; - tidyMicro = derive2 { name="tidyMicro"; version="1.47"; sha256="02pc6rh0l7xdrqhihi53zp17x0walc0mpm70spm7yrwzkbc486lv"; depends=[ade4 broom car cowplot dplyr Evomorph factoextra ggplot2 ggrepel gridExtra latex2exp lme4 lsr magrittr MASS Matrix plotly plyr png purrr rlang scales scatterplot3d shapes stringr ThreeWay tibble tidyr tidyverse vegan VGAM]; }; tidyREDCap = derive2 { name="tidyREDCap"; version="0.2.2"; sha256="15xbkcfikzlglhh2y54rbpknbhzm6h9bq72f4h3g8bmfr44vy72g"; depends=[dplyr janitor magrittr purrr rlang stringr tibble tidyr]; }; tidyRSS = derive2 { name="tidyRSS"; version="2.0.4"; sha256="0djkdjgs64f00pcs5gc8vmijyjsfb5sm0p64bybhs1y0kb3wlnl3"; depends=[anytime dplyr glue httr jsonlite magrittr purrr rlang tibble tidyselect vctrs xml2]; }; + tidySEM = derive2 { name="tidySEM"; version="0.2.1"; sha256="1vq7dfqb2396lw49wa5mjn60nvha6hv9ziknh14b4cj1qh85pz7x"; depends=[ggplot2 gtable igraph lavaan MplusAutomation OpenMx psych]; }; tidyUSDA = derive2 { name="tidyUSDA"; version="0.3.3"; sha256="1aqcvqc64qb8dbpmiw4cl06k0fh34fz5svzhjdgzrywl5qan3br3"; depends=[crayon dplyr fuzzyjoin ggplot2 httr jsonlite magrittr purrr sf tigris]; }; tidybayes = derive2 { name="tidybayes"; version="3.0.2"; sha256="00672xhg8a8r4sk36sm827bb435r1hchkphl1jpnkld8vbdhvpd2"; depends=[arrayhelpers coda dplyr ggdist ggplot2 magrittr posterior rlang tibble tidyr tidyselect vctrs withr]; }; tidybins = derive2 { name="tidybins"; version="0.1.0"; sha256="1kwwz0y1anlf1l8yl80xyiggdi8alsh0drb1529rijfk2jxlljg9"; depends=[badger ClusterR dplyr framecleaner ggplot2 janitor lubridate magrittr OneR purrr rlang rlist scales strex stringr tibble tidyselect xgboost]; }; tidyboot = derive2 { name="tidyboot"; version="0.1.1"; sha256="0nss1ci763g9p5f33g163ppamx72axc8xhrils0cql3ka8439pmn"; depends=[dplyr modelr purrr rlang tidyr]; }; tidycat = derive2 { name="tidycat"; version="0.1.2"; sha256="1c8ib5zcz2xk7yrzh4j5q4ccv6lnw58sh2ggqn04k2wp0gcj2zcs"; depends=[dplyr forcats magrittr stringr tibble tidyr]; }; - tidycensus = derive2 { name="tidycensus"; version="1.1"; sha256="1h32f1qgb7fnlbmqdkgl98cql06ds5r25ad3zbqrcs58ckngs549"; depends=[crayon dplyr httr jsonlite purrr rappdirs readr rlang rvest sf stringr tidyr tigris units xml2]; }; + tidycensus = derive2 { name="tidycensus"; version="1.1.2"; sha256="1762nqx8g6d3h2pl2ph30c8j2gs46ykdvfb17h977rv6m6bxm40m"; depends=[crayon dplyr httr jsonlite purrr rappdirs readr rlang rvest sf stringr tidyr tigris units xml2]; }; tidycharts = derive2 { name="tidycharts"; version="0.1.3"; sha256="1clpjyvqv6xhv7n64xh411x867fnn581qckzcwn18xbbbs56k6nn"; depends=[htmlwidgets knitr lubridate magick magrittr rlang rsvg stringr testthat]; }; - tidycmprsk = derive2 { name="tidycmprsk"; version="0.1.0"; sha256="00wp47kdwp5kln25mn1lvzwchxrf3fq3qlacn9pi2drhjcp7hwj4"; depends=[broom cli cmprsk dplyr ggplot2 gtsummary hardhat purrr rlang stringr survival tibble tidyr]; }; + tidycmprsk = derive2 { name="tidycmprsk"; version="0.1.2"; sha256="1xmi6dgp5b2kad3g0ymayx7slvgw53dmaibyj88yxf67m97p757r"; depends=[broom cli cmprsk dplyr ggplot2 gtsummary hardhat purrr rlang stringr survival tibble tidyr]; }; tidycode = derive2 { name="tidycode"; version="0.1.1"; sha256="0ahjhn1ar93xnd1snxnivdl43d1b6ica0pc30rgh8jpha87zbsay"; depends=[glue matahari pryr purrr rlang tibble]; }; tidycomm = derive2 { name="tidycomm"; version="0.2.1"; sha256="1h1xixa7fbijp1iifpwl689b1pz1vvpy7v4sc9wnkqgw0q31b3iy"; depends=[broom dplyr forcats glue magrittr MBESS purrr rlang stringr tibble tidyr]; }; tidycwl = derive2 { name="tidycwl"; version="1.0.6"; sha256="1i2z5dxrqz1l3366fmmgc4pfqnhm91nlc0m4y8mvzwgsgmf6dkxp"; depends=[dplyr htmlwidgets jsonlite magrittr visNetwork webshot yaml]; }; @@ -17783,7 +17864,7 @@ in with self; { tidydr = derive2 { name="tidydr"; version="0.0.3"; sha256="1sdh0grqccn1l2i4ji5q1yc5iz4vyzdfmd6qy5ypsza6bnkpgg1d"; depends=[ggplot2 rlang]; }; tidyestimate = derive2 { name="tidyestimate"; version="1.1.0"; sha256="0cwk6clah4sapbmfl5vvcv6di39azxb07z73pypnqx4gd32kk5q7"; depends=[dplyr ggplot2 ggrepel glue rlang]; }; tidyfast = derive2 { name="tidyfast"; version="0.2.1"; sha256="1bfs2wma705nx1lpndq75ama5dr9kkg8hwpklb20csnccnfrlvf6"; depends=[data_table Rcpp]; }; - tidyfst = derive2 { name="tidyfst"; version="1.5.0"; sha256="1ibkdw8xibmn0s4na4ddypg4vbgyb2lqs4hnwz30j0sbpqk5xfgr"; depends=[data_table fst stringr]; }; + tidyfst = derive2 { name="tidyfst"; version="1.6.0"; sha256="1x7aiypcwx9vdfpwgfza86xdk545kf038mc9gl84kga4binic4pl"; depends=[data_table fst stringr]; }; tidyft = derive2 { name="tidyft"; version="0.4.5"; sha256="0l6ixaqj356q319ms0bf655f530cgiia9saqdx9lryaf0b6i2hxb"; depends=[data_table fst stringr]; }; tidygapminder = derive2 { name="tidygapminder"; version="0.1.1"; sha256="1m6bynwnw1msrzvdmy12w3ympinqpd8j3may3rwmg9941nndjv2d"; depends=[data_table dplyr readxl tidyr]; }; tidygate = derive2 { name="tidygate"; version="0.4.9"; sha256="0zs2z4xf76d9hw7zwwpd3bisjvq672smbmxl0qgjb7xdzh66cqsf"; depends=[dplyr lifecycle magrittr purrr RColorBrewer rlang scales stringr tibble tidyr viridis]; }; @@ -17801,7 +17882,7 @@ in with self; { tidymv = derive2 { name="tidymv"; version="3.3.0"; sha256="0r192jiwfj6pk41jpap8gfk0irjkx2877qiqxi1hm196hns6hpjg"; depends=[dplyr ggplot2 magrittr mgcv rlang tibble tidyr]; }; tidync = derive2 { name="tidync"; version="0.2.4"; sha256="1nm3021m3xnn4xkprkxd9sj9bwvfbwhrdhfdkfhsc9azqy3rgg9f"; depends=[dplyr forcats magrittr ncdf4 ncmeta purrr rlang RNetCDF tibble tidyr]; }; tidyndr = derive2 { name="tidyndr"; version="0.2.0"; sha256="1c4g57zp50mfrsh8lac4iava37fx39i2yrjfrb1m0j22grsczfml"; depends=[dplyr forcats janitor lubridate magrittr purrr rlang stringr tibble tidyr tidyselect vroom]; }; - tidypaleo = derive2 { name="tidypaleo"; version="0.1.1"; sha256="0xpfzdl6asvpf07s20la4bmm5lr93j7h8kx7v3y79xfjk2q2fzvd"; depends=[digest dplyr ggplot2 ggstance purrr rioja rlang scales stringr styler tibble tidyr tidyselect vctrs withr]; }; + tidypaleo = derive2 { name="tidypaleo"; version="0.1.2"; sha256="1pxn5hmlnj6bwc4hx45j3757djl1b4b1azgp1vsfkhsnl846lbjm"; depends=[digest dplyr ggplot2 ggstance purrr rioja rlang scales stringr styler tibble tidyr tidyselect vctrs withr]; }; tidypmc = derive2 { name="tidypmc"; version="1.7"; sha256="1fijlvdiw4vwm34wizm4xlm0x10vvpkldzk7rrla44apq7y2w3yq"; depends=[dplyr readr stringr tibble tokenizers xml2]; }; tidyposterior = derive2 { name="tidyposterior"; version="0.1.0"; sha256="1h1664sjrg6akph6nrk8ynn2kjiswv6gshy35gamam1h4axf6wah"; depends=[dplyr generics ggplot2 purrr rlang rsample rstanarm tibble tidyr tune vctrs workflowsets]; }; tidypredict = derive2 { name="tidypredict"; version="0.4.8"; sha256="0fff349pkksss8h1k2qza78l81ha6avx63pxziv6dfa8h62qmrdy"; depends=[dplyr generics knitr purrr rlang stringr tibble tidyr]; }; @@ -17810,7 +17891,7 @@ in with self; { tidyqwi = derive2 { name="tidyqwi"; version="0.1.2"; sha256="16f0c2mdx6aiji6i7237kpc9awqdgrg6rhs408w6ag28dhxpgwlv"; depends=[dplyr furrr future httr jsonlite labelled magrittr purrr stringr tidyr xml2]; }; tidyr = derive2 { name="tidyr"; version="1.2.0"; sha256="1a0k296a0jb2xi5zgfrqfmmw8197bwibjl7a04fm49vqx6livl4c"; depends=[cpp11 dplyr ellipsis glue lifecycle magrittr purrr rlang tibble tidyselect vctrs]; }; tidyrules = derive2 { name="tidyrules"; version="0.1.5"; sha256="04y6pnrp132sckjpp9g8yl0z7glcsx9dcfdpa8r27wsc2g491i63"; depends=[assertthat magrittr partykit purrr stringr tibble]; }; - tidyselect = derive2 { name="tidyselect"; version="1.1.1"; sha256="0ss8mq05mwif64cj8zmrfx0ljgy3n0fvyv7f37782shr8rknmsqq"; depends=[ellipsis glue purrr rlang vctrs]; }; + tidyselect = derive2 { name="tidyselect"; version="1.1.2"; sha256="0w423pmg9wjx6q2rnp2ap66323rxvpmzd4nnsqq4m58pajqs7283"; depends=[ellipsis glue purrr rlang vctrs]; }; tidyseurat = derive2 { name="tidyseurat"; version="0.5.1"; sha256="15i75qrvgi88ywn165dhjqmdsh47p4i5clp5mq7d9rc8g7fj984h"; depends=[cli dplyr ellipsis fansi ggplot2 lifecycle magrittr pillar plotly purrr rlang Seurat SeuratObject stringr tibble tidyr tidyselect ttservice]; }; tidysmd = derive2 { name="tidysmd"; version="0.1.0"; sha256="0hbjcccs36i2cip6k56hv39awdxiljv322zlidlphkab7h95xiqc"; depends=[dplyr ellipsis glue purrr rlang smd tidyr tidyselect]; }; tidysq = derive2 { name="tidysq"; version="1.1.3"; sha256="1k4ws5zymrc93rlh8118xxfgjdwr7g99cyhzjp34abcsip1c3g21"; depends=[checkmate cli crayon dplyr pillar Rcpp testthat tibble vctrs]; }; @@ -17818,12 +17899,12 @@ in with self; { tidystopwords = derive2 { name="tidystopwords"; version="0.9.1"; sha256="00kak679ddwdgvqmjs5312w9k8sapc1n7dxipgqqfjqw2xy0h1jh"; depends=[dplyr]; }; tidystringdist = derive2 { name="tidystringdist"; version="0.1.4"; sha256="1srxh5gyspcghzvnmpyq36ky608ipf71vv0s1jg01mgf2i5pdkf4"; depends=[attempt rlang stringdist tibble]; }; tidysynth = derive2 { name="tidysynth"; version="0.1.0"; sha256="0rckvp51gp22bjcwcszdhhn51bzjivwndnvjcf67h1vmyqa3zjkj"; depends=[dplyr forcats ggplot2 kernlab LowRankQP magrittr optimx rgenoud rlang tibble tidyr]; }; - tidytable = derive2 { name="tidytable"; version="0.6.7"; sha256="0z0x1dswy25pyc1p1bf1rqj8pjhcvrx7shx0gsabs6dp6z12bmx5"; depends=[data_table glue lifecycle magrittr pillar rlang tidyselect vctrs]; }; + tidytable = derive2 { name="tidytable"; version="0.7.0"; sha256="14acqg5wvyfndl85fjgnwkyjwvyyvdk0z2884w5gxvc4aj0xy2g3"; depends=[data_table glue lifecycle magrittr pillar rlang tidyselect vctrs]; }; tidytext = derive2 { name="tidytext"; version="0.3.2"; sha256="0as7lscjl6ywk85almmb4f71vxmgkfds46g52ryggkg2isksvq3g"; depends=[dplyr generics hunspell janeaustenr lifecycle Matrix purrr rlang stringr tibble tokenizers vctrs]; }; tidytidbits = derive2 { name="tidytidbits"; version="0.3.1"; sha256="0fqqmisp339ynr5p5qs2dzshx031kggp7c70zm2w1v932xpalsrz"; depends=[dplyr extrafont forcats magrittr purrr rlang stringr tibble tidyr tidyselect]; }; tidytransit = derive2 { name="tidytransit"; version="1.3.0"; sha256="1n7c4iblxa1yifh51x4767k61qp99r6r4pchcyvz4bq7jbvclf18"; depends=[checkmate data_table digest dplyr geodist gtfsio hms httr rlang sf]; }; - tidytreatment = derive2 { name="tidytreatment"; version="0.2.1"; sha256="09d9qiwb1mniwfyklkiylr1glix1f441kkxlbff2x99j1xij197x"; depends=[dplyr purrr readr rlang tidybayes tidyr]; }; - tidytree = derive2 { name="tidytree"; version="0.3.7"; sha256="1wp411lf3syf0g1czhx3ksb4mx5d6vaw6ppipv0s0k69ivag45kq"; depends=[ape dplyr lazyeval magrittr rlang tibble tidyr tidyselect yulab_utils]; }; + tidytreatment = derive2 { name="tidytreatment"; version="0.2.2"; sha256="04z3afharkqyjk5kk097kpqlrmvq5220bsdlzmbzwl5k56vgxgxx"; depends=[dplyr purrr readr rlang tidybayes tidyr]; }; + tidytree = derive2 { name="tidytree"; version="0.3.9"; sha256="1prfv2jy6z4zp4gyi9krzbysipsbnjrkxcccflm4nwsd9i7mshqj"; depends=[ape dplyr lazyeval magrittr pillar rlang tibble tidyr tidyselect yulab_utils]; }; tidytuesdayR = derive2 { name="tidytuesdayR"; version="1.0.2"; sha256="00xlbmgg8779ypqcrdgn56lyklqknhh3pmqfc49f84xa5hrkyjfs"; depends=[httr jsonlite lubridate magrittr purrr readr readxl rstudioapi rvest usethis xml2]; }; tidyverse = derive2 { name="tidyverse"; version="1.3.1"; sha256="0ck6xmsw5p168jmw2fqv79fzfnw5jckfra7mfii261j6kl89bkw3"; depends=[broom cli crayon dbplyr dplyr dtplyr forcats ggplot2 googledrive googlesheets4 haven hms httr jsonlite lubridate magrittr modelr pillar purrr readr readxl reprex rlang rstudioapi rvest stringr tibble tidyr xml2]; }; tidyvpc = derive2 { name="tidyvpc"; version="1.2.0"; sha256="1xih8gdc44ddi5kqx8kq9i3pz21hddha87fpb58wjfr5hsaw18sy"; depends=[classInt data_table fastDummies ggplot2 magrittr mgcv quantreg rlang]; }; @@ -17836,7 +17917,7 @@ in with self; { tigger = derive2 { name="tigger"; version="1.0.0"; sha256="12mcq3mvmcpmb7cc0c3sij03wa9i37c3ilxpa3fm2cr3g3yj2r1v"; depends=[alakazam doParallel dplyr foreach ggplot2 gridExtra gtools iterators lazyeval rlang shazam stringi tidyr]; }; tightClust = derive2 { name="tightClust"; version="1.1"; sha256="0vqkp2g6z8y3b6dhzglmacjhf2qi1sg80kb941mwfafin2k40zbm"; depends=[]; }; tigreBrowserWriter = derive2 { name="tigreBrowserWriter"; version="0.1.5"; sha256="0izgx1khci6qc6pz85dxj75kzxvpr30l0vhcv9476jrcbwqs4k8m"; depends=[DBI RSQLite]; }; - tigris = derive2 { name="tigris"; version="1.5.1"; sha256="0siaal7d5q7398qhgf7v63k644n3kljw4b50gnv8mprnwp0hzz3r"; depends=[dplyr httr magrittr maptools rappdirs rgdal sf sp stringr uuid]; }; + tigris = derive2 { name="tigris"; version="1.6"; sha256="0q8niaa5l4xh2qfp243321ybqxg7s974wvifr4fdwnjgyjxgn57s"; depends=[dplyr httr magrittr maptools rappdirs rgdal sf sp stringr uuid]; }; tikzDevice = derive2 { name="tikzDevice"; version="0.12.3.1"; sha256="040yz6wi05151m9nal97symv66a133kk0a8c1h6nz058zk081vav"; depends=[filehash png]; }; tiledb = derive2 { name="tiledb"; version="0.11.0"; sha256="1lgagf8ix8bnl6g7qp0lzaz4xd6wlp9xa02rqyxb30bk0g022ik7"; depends=[nanotime Rcpp]; }; tilegramsR = derive2 { name="tilegramsR"; version="0.2.0"; sha256="11cnyvlghg8z7lr9ahzsjpyjrqnxqs77wdcydqvavrsqj745xvi2"; depends=[sf sp]; }; @@ -17875,12 +17956,12 @@ in with self; { tinyscholar = derive2 { name="tinyscholar"; version="0.1.4"; sha256="0lj5ax3m5kr18qf9xmrh6iyy00bp59wwi3ss96ynsyiajmndsajf"; depends=[curl dplyr ggplot2 gt jsonlite magrittr purrr R_utils rlang rvest stringr xml2]; }; tinyspotifyr = derive2 { name="tinyspotifyr"; version="0.2.2"; sha256="19nicp1ml73lylja2np52rcc070maxm9286fjm7bfx3zsblxmakc"; depends=[httr jsonlite]; }; tinytest = derive2 { name="tinytest"; version="1.3.1"; sha256="1mq31f7bzcz5bkgzl9khm1i80axfzra7gcjqxd2yqb4wrw1m3x4s"; depends=[]; }; - tinytex = derive2 { name="tinytex"; version="0.36"; sha256="0y1vfq89yi302cwdcnassm02dk14j9ivk5vf83fp6rb8h6ww3rk5"; depends=[xfun]; }; + tinytex = derive2 { name="tinytex"; version="0.37"; sha256="1na8g4z1crq0ia9ba17d0qxaif47jij2z3y14xlxjv7x243k6krg"; depends=[xfun]; }; tipa = derive2 { name="tipa"; version="1.0.5"; sha256="1mdjpbdbgd5n22l7fc0bfansh536ib1bgjaxzrl8g534cjxdnhgl"; depends=[optimr]; }; tipitaka = derive2 { name="tipitaka"; version="0.1.2"; sha256="0xf64bpzwywwjm0135c7zjn4ha0h1zj36rj2d4h8dskiq9z90xqi"; depends=[cpp11 dplyr magrittr stringi stringr]; }; - tipom = derive2 { name="tipom"; version="1.0.2-1"; sha256="1gdfv0g5dw742j6ycmi0baqh6xcchp3yf2n1g8vn7jmqgz5mlhdr"; depends=[]; }; tippy = derive2 { name="tippy"; version="0.1.0"; sha256="00c9v07ax7l0x5wpx3ca8hqvdqs3p62d58igp51rsbh9x1ylgjcn"; depends=[htmltools htmlwidgets jsonlite shiny]; }; tipr = derive2 { name="tipr"; version="0.3.0"; sha256="1iaj3cklq12xr7xbvkam0mjnq3g2rcmwy1m3kdm26qm793082nyz"; depends=[glue purrr tibble]; }; + tipsae = derive2 { name="tipsae"; version="0.0.4"; sha256="1cz0xwablrfaygq4yfqsq82f5n9im9mqb6ypczr4mgzj93m4v5k7"; depends=[BH broom callr ggplot2 ggpubr gridExtra loo maptools nlme Rcpp RcppEigen RcppParallel Rdpack rgeos rstan rstantools shiny sp spam spdep StanHeaders]; }; tis = derive2 { name="tis"; version="1.39"; sha256="1sq3acz8mybsbxng5fga4ynqvh1ly9hs3ca727jiyx1gam712mis"; depends=[]; }; titanic = derive2 { name="titanic"; version="0.1.0"; sha256="0mdmh0ciwfig00847bmvp50cyvj8pra6q4i4vdg7md19z5rjlx3j"; depends=[]; }; titeIR = derive2 { name="titeIR"; version="0.1.0"; sha256="047vidn3zydbjijwgz6qm2d9j2ny8ng2sv5jzm8zb300y7k2426c"; depends=[Iso]; }; @@ -17903,7 +17984,7 @@ in with self; { tm_plugin_mail = derive2 { name="tm.plugin.mail"; version="0.2-1"; sha256="0rn8jqv622qmc0zkz534ka5qnbca2rlabxm3vjbqplr6fh1ahwb1"; depends=[NLP tm]; }; tm_plugin_webmining = derive2 { name="tm.plugin.webmining"; version="1.3"; sha256="1694jidf01ilyk286q43bjchh1gg2fk33a2cwsf5jxv7jky3gl7h"; depends=[boilerpipeR NLP RCurl RJSONIO tm XML]; }; tm1r = derive2 { name="tm1r"; version="1.1.8"; sha256="15w703rd7mfm32b62yv9mpms2fjq9ifmc1n460vsrpqz1dkiavb9"; depends=[httr jsonlite]; }; - tmap = derive2 { name="tmap"; version="3.3-2"; sha256="16k2nh4b4rkiid5ny97n22wn89pvh4sn6pdykbbj6qjlqp2p9jrb"; depends=[abind classInt htmltools htmlwidgets leafem leaflet leafsync RColorBrewer rlang sf stars tmaptools units viridisLite widgetframe]; }; + tmap = derive2 { name="tmap"; version="3.3-3"; sha256="012y50hbz2f87mwcmd9lp9ikcplvkz51g4fmanw3swlc1zpqxrb0"; depends=[abind classInt htmltools htmlwidgets leafem leaflet leafsync RColorBrewer rlang sf stars tmaptools units viridisLite widgetframe]; }; tmaptools = derive2 { name="tmaptools"; version="3.1-1"; sha256="0bal3czrdr93qig8s5cf5szld5vjbbks67rismfhlkmlgw6wp2gx"; depends=[dichromat lwgeom magrittr RColorBrewer sf stars units viridisLite XML]; }; tmbstan = derive2 { name="tmbstan"; version="1.0.3"; sha256="0y05albvggavhdijymwhw2ffg07jnvspppysmbz984c1my98zw4l"; depends=[BH Rcpp RcppEigen RcppParallel rstan StanHeaders TMB]; }; tmcn = derive2 { name="tmcn"; version="0.2-13"; sha256="0rf8mz6kdm83pm85kzfyzb8kd3iwaxv5bgphjpxlnq6z32m9yds7"; depends=[]; }; @@ -17917,9 +17998,9 @@ in with self; { tmvmixnorm = derive2 { name="tmvmixnorm"; version="1.1.1"; sha256="0i1g3598d43azyy1bsrvkjybqa5cd991fpmfqi5wv5703zaha2fj"; depends=[MASS]; }; tmvnsim = derive2 { name="tmvnsim"; version="1.0-2"; sha256="03xsvsg9bqvgl98ywid3h91mmlhax5s6wvmypp3hq91vmc5kvxlp"; depends=[]; }; tmvtnorm = derive2 { name="tmvtnorm"; version="1.4-10"; sha256="1w3kmpx25l7rb80vpclqq4pbbv12qgysyqxjq3lp55l9nklkb7qs"; depends=[gmm Matrix mvtnorm]; }; - tmvtnsim = derive2 { name="tmvtnsim"; version="0.1.0"; sha256="0lmngy3ilb4v3ix6414bgi2pzwxgq41vj8rzydh5h8vgc3z771q4"; depends=[Rcpp RcppArmadillo]; }; + tmvtnsim = derive2 { name="tmvtnsim"; version="0.1.1"; sha256="1gf5gqb333q82cbdw3lfjmxnn8z7qds73xmc8dqm06zcqsfmdbv3"; depends=[Rcpp RcppArmadillo]; }; tnet = derive2 { name="tnet"; version="3.0.16"; sha256="0922y9zb64zazl2irwfxxbghkgcwi2q57gylpiaxgmj4q6lc62l9"; depends=[igraph survival]; }; - toOrdinal = derive2 { name="toOrdinal"; version="1.1-0.0"; sha256="0zg4zk7jx8s57g8nb0jw7r7gss00349jmkglf6sz26p7jldpgmff"; depends=[crayon testthat]; }; + toOrdinal = derive2 { name="toOrdinal"; version="1.3-0.0"; sha256="1zfx91024dyafkfyjsm2829qsqkz57g6p5v47lp2x0ykrwpdbm37"; depends=[crayon testthat]; }; toastui = derive2 { name="toastui"; version="0.2.1"; sha256="0c32410ylnp2b4h72aq7pig423jgcl63x8lmb8cf8m7h83xlj4ah"; depends=[htmltools htmlwidgets magrittr rlang shiny shinyWidgets]; }; tobit1 = derive2 { name="tobit1"; version="0.1-3"; sha256="08rq1h3psxjzzfna6krji4ixrbd43v77qb9k00v1rysarlqyg0k1"; depends=[Formula generics margins numDeriv prediction Rdpack tibble]; }; todor = derive2 { name="todor"; version="0.1.2"; sha256="1ncg88wh9l2mja5w53ry2b19sa5x9m6cnkvw8lszbmc92idpspig"; depends=[R_utils rex rstudioapi stringr]; }; @@ -17943,12 +18024,14 @@ in with self; { toprdata = derive2 { name="toprdata"; version="1.0.0"; sha256="1fyxhjj4c4j3268bcffq9wff1bkqan696hfz2y67bpg0xq1h3nbb"; depends=[]; }; topsis = derive2 { name="topsis"; version="1.0"; sha256="056cgi684qy2chh1rvhgkxwhfv9nnfd7dfzc05m24gy2wyypgxj3"; depends=[]; }; tor = derive2 { name="tor"; version="1.1.2"; sha256="1s34hzw3a4cm9gk85fcxgxwmn2xc7njs1iw1snd91id3gdl6vppx"; depends=[fs readr rlang tibble]; }; - torch = derive2 { name="torch"; version="0.6.0"; sha256="05vxb84qxna1rpzqhjw6gwyc569zyz7rfbdkahglvihqjjwabc4x"; depends=[bit64 callr cli coro ellipsis magrittr R6 Rcpp rlang withr]; }; + torch = derive2 { name="torch"; version="0.7.2"; sha256="163pvl3gyz7l2fmqhgg4k6pw4dmvfir71yp9l5ra2k4zc32lz166"; depends=[bit64 callr cli coro ellipsis magrittr R6 Rcpp rlang withr]; }; torchaudio = derive2 { name="torchaudio"; version="0.2.0"; sha256="1bzx428lzjdwb9ds2pcq7nlalg75s7bvmiimjw3k8lvbq50yjlyh"; depends=[fs glue rappdirs Rcpp rlang torch withr]; }; torchdatasets = derive2 { name="torchdatasets"; version="0.1.0"; sha256="1iliz3iv143zmffd4jvvfxzsqn8bzp1sg5573rqjjbhnvy958mgg"; depends=[fs pins stringr torch torchvision withr zip]; }; torchvision = derive2 { name="torchvision"; version="0.4.1"; sha256="07pdsqcnlmsc1yx7ldi18a0lqkgqbqwsqh7109rbrycczxrc1dqv"; depends=[abind fs jpeg png rappdirs rlang torch withr]; }; + torchvisionlib = derive2 { name="torchvisionlib"; version="0.1.0"; sha256="0kiix21gqpjw4qhz9xwpmlygjy66qxjdk3ja3dbrc1gz3x132drl"; depends=[glue Rcpp rlang torch]; }; tornado = derive2 { name="tornado"; version="0.1.1"; sha256="12wvcc5p5fk6b1w3qhahjad5k0m34f744jszaid8hnrbbfysp8na"; depends=[assertthat ggplot2 gridExtra scales survival]; }; tosca = derive2 { name="tosca"; version="0.3-2"; sha256="1z8svczy93lpdj7n1gk9jz8jgzkjsf886ldlkgq1mfi1j6m8557y"; depends=[data_table htmltools lda lubridate quanteda RColorBrewer stringr tm WikipediR]; }; + toscutil = derive2 { name="toscutil"; version="2.1.0"; sha256="1ciyfxm3kbgvfqasv90i9ldrbvmkk0ryp310a1f44iih8rpvb2g6"; depends=[]; }; tosls = derive2 { name="tosls"; version="1.0"; sha256="03nqwahap504yvcksvxdhykplbzmf5wdwgpzm7svn8bymdc472v2"; depends=[Formula]; }; tosr = derive2 { name="tosr"; version="0.1.1"; sha256="1hif33q73pbzgrs92ffkfiisxgxk35fyf37bvxb5kccrpwly9zih"; depends=[bibliometrix CINNA dplyr igraph magrittr rebus rlang stringr tibble tidyr]; }; totalcensus = derive2 { name="totalcensus"; version="0.6.6"; sha256="09c7hm9yys48p8pjp9kv3szbwrg9xb1xf47zya24yir0gxs7bfmi"; depends=[data_table magrittr purrr stringr]; }; @@ -17956,7 +18039,7 @@ in with self; { touchard = derive2 { name="touchard"; version="2.0.1"; sha256="06491r4x3ycmv3ddbqwig334wj9qvm395xlaifx4hjjyyi65xb3q"; depends=[MASS nleqslv numDeriv plotrix]; }; tourr = derive2 { name="tourr"; version="0.6.0"; sha256="0mci0y6s851gh1b157mhpvz0p7hkq2f1ccq9jj22p5k7ipxwn8dh"; depends=[dplyr MASS tibble]; }; toxEval = derive2 { name="toxEval"; version="1.2.0"; sha256="11rw8vjnz3kzikd59vbyiv8vc7dijpi6znyxlc7c4rpi41gs6c0m"; depends=[dplyr DT ggplot2 leaflet magrittr RColorBrewer readxl shiny shinyAce shinycssloaders shinydashboard tidyr]; }; - toxpiR = derive2 { name="toxpiR"; version="1.0.2"; sha256="1n3kkhsj5bwampkh5pd70mfym8kcvn1y527ff0jrgs65yl4bfs8d"; depends=[BiocGenerics pryr rlang S4Vectors tidyr]; }; + toxpiR = derive2 { name="toxpiR"; version="1.0.3"; sha256="1x72g8caja241cx2lgn70f89ps8af38a3c5lxn90yfpndcp0mb3x"; depends=[BiocGenerics pryr rlang S4Vectors tidyr]; }; toxtestD = derive2 { name="toxtestD"; version="2.0"; sha256="0b7hmpfhwg626r8il12shni0kw94cqnbj49y4vfh8gn98x1s6m48"; depends=[]; }; tpAUC = derive2 { name="tpAUC"; version="2.1.1"; sha256="0wix9qwcidj7xfqhh7bmrpnadd9qlkvg3515gaamdxkjbz2kyydc"; depends=[pROC]; }; tpfp = derive2 { name="tpfp"; version="0.0.1"; sha256="0vm5qssaanvi0sck2hj1qgjra89a42i6nvzbva5z0aj2hkd5h4vh"; depends=[knitr readxl xlsx]; }; @@ -17971,12 +18054,13 @@ in with self; { trackdf = derive2 { name="trackdf"; version="0.2.2"; sha256="110m7dmciyqbcb69sxi02h5djnf098wzfr84d6yppyc73a81989y"; depends=[data_table lubridate sp tibble]; }; trackdown = derive2 { name="trackdown"; version="1.1.1"; sha256="1l8mqdfpdf25vyibxqcqhyip6aqllb9riz2v6w4k1rfc8b9dl07f"; depends=[cli googledrive rmarkdown]; }; trackeR = derive2 { name="trackeR"; version="1.5.2"; sha256="1f3giz6naxxyicgy9v0391ang43srwhy9zbiv4zmlc8i9v05b57i"; depends=[fda foreach ggmap ggplot2 ggridges gridExtra gtable jsonlite leaflet raster RSQLite scam sp xml2 zoo]; }; - trackeRapp = derive2 { name="trackeRapp"; version="1.1"; sha256="0pys5vw3268j90i2gg6b1sgbx917vvk0x9k2ryh3l3p96vkrqv87"; depends=[changepoint colorspace DT foreach mapdeck mgcv plotly sf shiny shinydashboard shinyjs shinyWidgets trackeR V8 zoo]; }; + trackeRapp = derive2 { name="trackeRapp"; version="1.2"; sha256="1y6n9hgzybz5860qpzj9rdb9yl4k6b9h13d91fqn3qarpnx9n5qr"; depends=[changepoint colorspace DT foreach mapdeck mgcv plotly sf shiny shinydashboard shinyjs shinyWidgets trackeR V8 zoo]; }; trackr = derive2 { name="trackr"; version="0.10.7"; sha256="0h7ihymdvfvnnyxfxjwshslrxngh3i2ksqvhxynrp46m20mwjavd"; depends=[CodeDepends fastdigest ggplot2 gridGraphics histry htmltools lattice miniUI RJSONIO rlang rmarkdown roprov rsolr shiny]; }; trackter = derive2 { name="trackter"; version="0.1.1"; sha256="11rk53w0y9p0az6ydiq3vy50j1pj4p4cml5dqabrpcgfz4icjkrs"; depends=[data_table dplyr EBImage features ggplot2 jpeg Momocs pastecs plyr raster zoo]; }; tractor_base = derive2 { name="tractor.base"; version="3.3.3.1"; sha256="0w5jw7pf77npkgig7667yikpbwv4dfk1dcq63qm88l409ga2f95p"; depends=[ore reportr RNifti shades]; }; trade = derive2 { name="trade"; version="0.8.0"; sha256="1ly8mb1gm40v72lwk29l3g55f2clrcmvn5vgfijfnc4nq37j1h0j"; depends=[antitrust]; }; tradepolicy = derive2 { name="tradepolicy"; version="0.5.0"; sha256="1rjyx6mwqxgjprzll9908jgvl0q9dr8axjy6dp4fsxq2pvlnnz8m"; depends=[broom cli crayon dplyr ggplot2 lmtest magrittr msm purrr rstudioapi sandwich tibble tidyr]; }; + tradestatistics = derive2 { name="tradestatistics"; version="3.0.2"; sha256="18v9iq588fp1w8p72an51dargqa7vcgaln8wiz9d2a0sjhq0gxxk"; depends=[crul data_table digest jsonlite memoise]; }; trafo = derive2 { name="trafo"; version="1.0.1"; sha256="0gq3snjpkw0ncny7pkfi686qkgdhd8id73jxjk3chhqf5mzrrsbc"; depends=[FNN lmtest moments pryr]; }; trainR = derive2 { name="trainR"; version="0.0.1"; sha256="0wmxhw8yxkxpw08jma3r0zy7dhsrkbh5wjvd3izp5gf9dn9533cd"; depends=[dplyr glue lubridate magrittr purrr RCurl stringr tibble tidyr usethis xml2]; }; traineR = derive2 { name="traineR"; version="1.6.2"; sha256="1q6r7q6k0rsx21bxp2vp4rnrjnslngwbv55kmrlmzn4mw61xh33q"; depends=[ada adabag dplyr dummies e1071 ggplot2 glmnet glue kknn MASS neuralnet nnet randomForest ROCR rpart scales stringr xgboost]; }; @@ -17984,18 +18068,19 @@ in with self; { traitdataform = derive2 { name="traitdataform"; version="0.6.7"; sha256="1p5m480k8da4k091jiryqry0zwg8kw3s1cvvpgqjmjkz3v11dxsd"; depends=[curl data_table getPass plyr RCurl reshape2 suppdata taxize units XML]; }; traits = derive2 { name="traits"; version="0.5.0"; sha256="04s2523wkbjqxpwllvcy7ikyfri5gldgnynjswsxdy0k945wacvz"; depends=[crul data_table hoardr httr jsonlite readr rvest taxize tibble xml2]; }; traj = derive2 { name="traj"; version="1.2"; sha256="0mq6xdbxjqjivxyy7cwaghwmnmb5pccrah44nmalssc6qfrgys4n"; depends=[cluster GPArotation NbClust pastecs psych]; }; + trajeR = derive2 { name="trajeR"; version="0.9.0.5"; sha256="1zy3hg1m1a5dpx494mlb72vfpng5892dcginv6rwxc2c1ggv6z86"; depends=[capushe MASS minpack_lm numDeriv Rcpp RcppArmadillo ucminf]; }; trajectories = derive2 { name="trajectories"; version="0.2-3"; sha256="1k1fyjyng9mi3k5v6bpbv3vkqr7c9zjp4yiyynb3rjxqpn1fxx7k"; depends=[lattice sp spacetime zoo]; }; trajr = derive2 { name="trajr"; version="1.4.0"; sha256="092hx27b6d0vy1pvmga1z3b245aa9gn9aw3hszbhhkkic5zfpgbq"; depends=[plotrix signal]; }; tram = derive2 { name="tram"; version="0.6-4"; sha256="04vv1ydmcjc6rffl35a898jlc9lgvqrjnbc06k4krr0igq2s39ya"; depends=[basefun Formula Matrix mlt multcomp sandwich survival variables]; }; - tramME = derive2 { name="tramME"; version="0.1.2"; sha256="1s6s5m1xkzjchmiwvcgdx7w68igm2dy3wc61v5gd8ihv4l26ccd7"; depends=[alabama basefun coneproj lme4 MASS Matrix mlt mvtnorm nlme numDeriv RcppEigen TMB tram variables]; }; + tramME = derive2 { name="tramME"; version="0.1.3"; sha256="0gqvk15xk2wl12vlmshj9sz0qvih03wrbs700hkd1ifjlm2kjlnl"; depends=[alabama basefun coneproj lme4 MASS Matrix mlt mvtnorm nlme numDeriv RcppEigen TMB tram variables]; }; tramnet = derive2 { name="tramnet"; version="0.0-6"; sha256="034ij8ir5v31n22pig7v6qizmyhpar1mklifvcskg0ydmpy7qkj4"; depends=[basefun CVXR lhs mlr mlrMBO mlt ParamHelpers sandwich smoof tram]; }; trampoline = derive2 { name="trampoline"; version="0.1.1"; sha256="05inq5j8gvnpww6z21dzc57vilsm4gx3m274fpsamp54q85mi68s"; depends=[coro fastmap rlang]; }; tranSurv = derive2 { name="tranSurv"; version="1.2.2"; sha256="17rvzjcn76z5niw1jappiadbkf66a9x0m7p3251lgb7qrnvpx3gk"; depends=[rootSolve SQUAREM survival truncSP]; }; transcribeR = derive2 { name="transcribeR"; version="0.0.0"; sha256="0y2kxg2da71i962fhsjxsr2ic3b31fmffhj3gg97b0nykfpcviib"; depends=[httr]; }; transfR = derive2 { name="transfR"; version="0.1.1"; sha256="1pdacv0w5rf7vn6pbyydrjj1v6w8m36v1jaghb28xv3gn27308iy"; depends=[doParallel foreach Rdpack sf stars units]; }; + transforEmotion = derive2 { name="transforEmotion"; version="0.0.1"; sha256="1f4gv78dfbjyr42z908qc92giavhsbm05430c5adyicfpxwnpil7"; depends=[pbapply reticulate]; }; transformmos = derive2 { name="transformmos"; version="0.1.0"; sha256="1hsp399cj6cnsysb4hm4ra075qm2fxkjhyq16m3nai51fvzkak0p"; depends=[]; }; transformr = derive2 { name="transformr"; version="0.1.3"; sha256="1dn6h8i7vli2zv4408djyg74j9fv9sjrqf75hx9dh7qnj352wf69"; depends=[lpSolve Rcpp rlang sf tweenr]; }; - translate = derive2 { name="translate"; version="0.1.2"; sha256="1w0xrg1xxwfdanlammmixf06hwq700ssbjlc3cfigl50p87dbc5x"; depends=[functional lisp RCurl RJSONIO]; }; translateR = derive2 { name="translateR"; version="1.0"; sha256="11kh9hjpsj5rfmzybnh345n1gzb0pdksrjp04nzlv948yc0mg5gm"; depends=[httr RCurl RJSONIO textcat]; }; translation_ko = derive2 { name="translation.ko"; version="0.0.1.5.2"; sha256="1w5xibg4znhd39f3i0vsqckp6iia43nblqxnzgj0ny6s7zmdq1wd"; depends=[]; }; transmdl = derive2 { name="transmdl"; version="0.1.0"; sha256="16lvcjwb7hq4a4925kqnas7c4xqw3gpbad3fcghp0qm4whyig8dg"; depends=[Rcpp RcppEigen statmod survival]; }; @@ -18012,7 +18097,7 @@ in with self; { treeDA = derive2 { name="treeDA"; version="0.0.5"; sha256="0rdqvjj16w7ykpxd6m800h4zv79y9c1phhkl14xy10gbi2cqh10g"; depends=[ape ggplot2 gtable Matrix mvtnorm phyloseq reshape2 sparseLDA]; }; treebalance = derive2 { name="treebalance"; version="1.1.0"; sha256="0wxsd9mx7bcz95vn4a9w1bzqvd8v1qk5qv00p3x58qks7nzxyzdv"; depends=[ape memoise]; }; treebase = derive2 { name="treebase"; version="0.1.4"; sha256="1bx31jahb0wy2g8wl1z71vy659lfi8fq1sbbaxvyixzcwymix1wq"; depends=[ape httr RCurl XML]; }; - treeclim = derive2 { name="treeclim"; version="2.0.5.1"; sha256="1gwsprvr9yi67slrkxf34kbqvqkr4csaqkcdbdi1vwivn2nyb3py"; depends=[abind boot ggplot2 lmodel2 lmtest np plyr Rcpp RcppArmadillo]; }; + treeclim = derive2 { name="treeclim"; version="2.0.6.0"; sha256="0zdn766vxgycisjyjw7nh7hs817kqhdihyla3fhpzykw9pxnw0b2"; depends=[abind boot ggplot2 lmodel2 lmtest np plyr Rcpp RcppArmadillo]; }; treecm = derive2 { name="treecm"; version="1.2.2"; sha256="0vrawg4vvy270dn20gb2k99xi4q89l4mjz0mm7ikpz8wxqypzq2l"; depends=[plyr]; }; treedata_table = derive2 { name="treedata.table"; version="0.1.0"; sha256="0dhnb8if5wq6hzhjg40cw80sacigqmlm7nplm1f1ay5cqx1ynfi7"; depends=[ape data_table geiger lazyeval]; }; treedater = derive2 { name="treedater"; version="0.5.0"; sha256="007rdrbv3v1z3qbyasla22rck105sqlqh93yfmxklihdydl7smfd"; depends=[ape limSolve]; }; @@ -18083,7 +18168,7 @@ in with self; { tryCatchLog = derive2 { name="tryCatchLog"; version="1.3.1"; sha256="0k40a48qzwmardjnkf0h5s5zryivzvdanz61kxdqdfqlil19ma0d"; depends=[]; }; ts_extend = derive2 { name="ts.extend"; version="0.1.1"; sha256="03b358nywx0zynb6006886mzvz1mbbaim6b5m641drklh6k0l6r1"; depends=[]; }; tsBSS = derive2 { name="tsBSS"; version="1.0.0"; sha256="04nsbifc6zkilqifj6iwc0vf2z84y8wcbf8pndgkzi039kk6c385"; depends=[boot BSSprep forecast ICtest JADE Rcpp RcppArmadillo xts zoo]; }; - tsDyn = derive2 { name="tsDyn"; version="10-1.2"; sha256="0wwp18qaxljdy1zqww1qw9fa9ycvgwcf6j52cpx3v2f2177x7snc"; depends=[foreach forecast MASS Matrix mgcv mnormt nnet tseries tseriesChaos urca vars]; }; + tsDyn = derive2 { name="tsDyn"; version="11.0.2"; sha256="0dplrl4vknha2aa0h3vg0sivn2dm0h23my6y2gdghhplvzy0qaa4"; depends=[foreach forecast MASS Matrix mgcv mnormt nnet tseries tseriesChaos urca vars]; }; tsModel = derive2 { name="tsModel"; version="0.6"; sha256="0mkmhzj4g38ngzfcfx0zsiqpxs2qpw82kgmm1b8gl671s4rz00zs"; depends=[]; }; tsPI = derive2 { name="tsPI"; version="1.0.3"; sha256="00p7275iq8qn6c6dpqjr5s9fzc0a6njqqi9gvqnh5s9lfx9mbk1v"; depends=[KFAS]; }; tsSelect = derive2 { name="tsSelect"; version="0.1.8"; sha256="0ysijzhhwaj5n7h50jacshnla6d0h61q0f6lj19ic0lwvlz4yazy"; depends=[forecast]; }; @@ -18119,7 +18204,7 @@ in with self; { tspmeta = derive2 { name="tspmeta"; version="1.2"; sha256="028jbbd0pwpbjq4r6jcc1h0p7c4djcb9d2mvgzw1rmpphaxjvrkd"; depends=[BBmisc checkmate fpc ggplot2 MASS splancs stringr TSP vegan]; }; tsqn = derive2 { name="tsqn"; version="1.0.0"; sha256="1iv1wwa6a9824dbgfk5a609szppc3a8j250z74hb8csjvwwx9qq9"; depends=[fracdiff MASS robustbase]; }; tsriadditive = derive2 { name="tsriadditive"; version="1.0.0"; sha256="1zk97vz5ag6j0r8w3b5kgl2cx628jmdy73spmwmsw7x5yc24901d"; depends=[survival]; }; - tsrobprep = derive2 { name="tsrobprep"; version="0.3.1"; sha256="1j4y4zslfrrnzimr87fl9am4n8g4b29sqkf608rrqywa08pahsq7"; depends=[glmnet MASS Matrix mclust quantreg textTinyR zoo]; }; + tsrobprep = derive2 { name="tsrobprep"; version="0.3.2"; sha256="0y7h8kh721r859b7y5vxh4q7dmjlx50qcc6pib204x3hhzv1yyrc"; depends=[glmnet MASS Matrix mclust quantreg Rdpack textTinyR zoo]; }; tssim = derive2 { name="tssim"; version="0.1.7"; sha256="154snb0npy8zbkspp475nv9rvv1ls6rbgxz3jr152j79vsiis3ng"; depends=[dsa timeDate tsbox xts zoo]; }; tsutils = derive2 { name="tsutils"; version="0.9.2"; sha256="0gp8f0a9dn3h4lv38xiw04j832igwhfralzc5vd74r952x7b6hbx"; depends=[forecast MAPA plotrix RColorBrewer]; }; tsviz = derive2 { name="tsviz"; version="0.1.0"; sha256="099ga750kr9hrkd8vaxhz6h4gha6zfr9jzqwrmgms2h2h1a7jxr7"; depends=[dplyr forecast ggplot2 lubridate magrittr miniUI plotly shiny shinyhelper]; }; @@ -18128,7 +18213,7 @@ in with self; { tsxtreme = derive2 { name="tsxtreme"; version="0.3.3"; sha256="1725rkdq377z3c06hc2g9l0dwgfy5gz3pgygpz1pyy83s5c7j869"; depends=[evd MASS mvtnorm tictoc]; }; ttScreening = derive2 { name="ttScreening"; version="1.6"; sha256="1i8c9l3sdkzl99zxxyfqm84vkh6wjdh3a32l5q8ikf74g9dhxkf4"; depends=[corpcor limma MASS matrixStats simsalapar sva]; }; ttTensor = derive2 { name="ttTensor"; version="1.0.1"; sha256="0ryfxx4chnc10cl5h5cb4hnvzf2cm64k8m36l4qbjz4f1vkw0a36"; depends=[Matrix PTAk rTensor tensorr]; }; - ttbary = derive2 { name="ttbary"; version="0.2-0"; sha256="1231ssndf0a0b1g8sz8w5ckw7410c5qmflnsxmizc4v8iiscdibc"; depends=[Rcpp spatstat spatstat_core spatstat_geom spatstat_linnet]; }; + ttbary = derive2 { name="ttbary"; version="0.2-2"; sha256="1h3ly8vk5v9ggs2fhl0xql074wc1vxip7x8vm70pnqnx5xzg6dfi"; depends=[Rcpp spatstat spatstat_core spatstat_geom spatstat_linnet spatstat_random]; }; ttbbeer = derive2 { name="ttbbeer"; version="1.1.0"; sha256="1azffcizm3460kxvrxxkilc6qxspyi247x8drrw5ywfichwhmdhc"; depends=[]; }; ttcg = derive2 { name="ttcg"; version="1.0.1"; sha256="1kha6jp89r8qx5rycwlcl1dprw33j71yng03k9l7q3b7d4lz4bg5"; depends=[numDeriv]; }; ttdo = derive2 { name="ttdo"; version="0.0.8"; sha256="184rfmrd4y63j8i62w8cy7d6cqgvlhj8h6zgjzsvad9l6pq2hmb3"; depends=[diffobj tinytest]; }; @@ -18184,7 +18269,7 @@ in with self; { twoway = derive2 { name="twoway"; version="0.6.3"; sha256="02z2syb0g92d97gjxfkarpil9b2n25s128606h071jl0s88cr4ar"; depends=[]; }; twowaytests = derive2 { name="twowaytests"; version="1.1"; sha256="00wz8l4ginv1pp1dbjwqbmn4q8i8fnmhz8x3v6riffndw5ag22f2"; depends=[car ggplot2 nortest onewaytests]; }; twoxtwo = derive2 { name="twoxtwo"; version="0.1.0"; sha256="03wrxzjv21df5c8w9bixfw42m82yf9grv1c4nlw5dy09lsfhl8sv"; depends=[dplyr forcats knitr magrittr rlang tidyr]; }; - txshift = derive2 { name="txshift"; version="0.3.7"; sha256="0s2wkms4cwkxyqwwd421mcg4mkc6j42kbw76qwdazrg5cw4dp9zc"; depends=[assertthat data_table ggplot2 hal9001 haldensify latex2exp lspline mvtnorm Rdpack scales stringr]; }; + txshift = derive2 { name="txshift"; version="0.3.8"; sha256="0lniwb7lijcasqmhs1zryb9wqf5xka13q4yb9m2j8dblb51y3i79"; depends=[assertthat data_table ggplot2 hal9001 haldensify latex2exp lspline mvtnorm Rdpack scales stringr]; }; txtplot = derive2 { name="txtplot"; version="1.0-4"; sha256="00sriml48y70j18jz235dsfm5x3a81bnzskfp3hnv6cbjwwsmca4"; depends=[]; }; txtq = derive2 { name="txtq"; version="0.2.4"; sha256="1fvjprcwfqbw9c4sqcxv8r0jgvqmkip6d86r3cgrhwyic1ndk1l5"; depends=[base64url filelock R6]; }; typed = derive2 { name="typed"; version="0.0.1"; sha256="096rzsxjdycf55jx33cxk1284rzb2vcxvp298y4q6v9x0w36php3"; depends=[waldo]; }; @@ -18202,13 +18287,13 @@ in with self; { ubms = derive2 { name="ubms"; version="1.1.0"; sha256="016rdjba3h2hm6ps4jrnqzy1hwm0nmn3yq922dbfw8396qvmr2zf"; depends=[BH ggplot2 gridExtra lme4 loo Matrix pbapply Rcpp RcppArmadillo RcppEigen RcppParallel RSpectra rstan rstantools StanHeaders unmarked]; }; ucbthesis = derive2 { name="ucbthesis"; version="1.0"; sha256="0l855if3a7862lxlnkbx52qa617mby634sbb2gkprj21rwd7lcbp"; depends=[knitr stringr]; }; uchardet = derive2 { name="uchardet"; version="1.1.0"; sha256="1dnvi45npk7l7sqbv3c1mrg0m7vrrp7iya9kjndcg9x3h0iial9z"; depends=[]; }; - ucie = derive2 { name="ucie"; version="1.0.0"; sha256="02dk8r96dgi35qxr20s64jrsxaivj5mvwb22bgyjg8yrbwmwzf88"; depends=[colorspace dplyr geometry pracma ptinpoly remotes rgl]; }; + ucie = derive2 { name="ucie"; version="1.0.1"; sha256="1bi55zw2niv8qixsihwjibfi3k22kvsbi8gcbwxwh93l1mcgicx9"; depends=[colorspace dplyr geometry pracma ptinpoly remotes rgl]; }; uclust = derive2 { name="uclust"; version="1.0.0"; sha256="10i78fc81sy635mi8nn1gmryvcbqq7f99ws6byqlnhwyw79qmvb1"; depends=[dendextend robcor]; }; ucminf = derive2 { name="ucminf"; version="1.1-4"; sha256="01vggwg1w71k98qs6fhb0x1843vi322mf4g3hbclks94kcpkisx2"; depends=[]; }; udapi = derive2 { name="udapi"; version="0.1.3"; sha256="0qyn6fdh8ia913hn2dl0x99xsm20ps8zm52snswlyb00prinm668"; depends=[curl httr]; }; udpipe = derive2 { name="udpipe"; version="0.8.8"; sha256="0bjl3l652lmq6yyhpc4nyhqgjb0drzk4ppmx4i9m0rrwrf997d9b"; depends=[data_table Matrix Rcpp]; }; udunits2 = derive2 { name="udunits2"; version="0.13.2"; sha256="0sarkw5ciafiaq1haam8d8w0cmai63wrw2m4rcbjfa5k0648j07f"; depends=[]; }; - ufRisk = derive2 { name="ufRisk"; version="1.0.1"; sha256="1ax01k7a54qngbyliqd5cr96wv1a63jcij2ywxzvq2ykiv02ksb0"; depends=[esemifar fracdiff rugarch smoots]; }; + ufRisk = derive2 { name="ufRisk"; version="1.0.3"; sha256="0gqc5faf96pj8pgwddvcbgbp52sai9mscaxp20gx2xgx7zp66l89"; depends=[esemifar fracdiff rugarch smoots]; }; ufs = derive2 { name="ufs"; version="0.5.2"; sha256="1lqnib0pizx97isqbr4v2r4qp7fph6znbd5arbjnxmlh2wblfbsl"; depends=[digest diptest dplyr ggplot2 ggrepel ggridges gridExtra gtable htmltools kableExtra knitr pander plyr pwr rmdpartials scales SuppDists]; }; ugatsdb = derive2 { name="ugatsdb"; version="0.2.2"; sha256="0f5fgys80b5nlj5f8jadh5jpylhhb5hsknrsspfac5amncmb0yyv"; depends=[collapse data_table DBI RMySQL writexl]; }; ugomquantreg = derive2 { name="ugomquantreg"; version="1.0.0"; sha256="1a5vc1qgy3kp1by5bp296w980lkxcghzzxibhap2jg06jnzjfcq8"; depends=[gamlss gamlss_dist pracma Rcpp]; }; @@ -18267,7 +18352,6 @@ in with self; { unusualprofile = derive2 { name="unusualprofile"; version="0.1.0"; sha256="0dasknh8hwbvc530d8i0xfizqxygrlz3w2bdnsgdd9sf84flqajl"; depends=[dplyr ggnormalviolin ggplot2 lavaan lifecycle magrittr patchwork purrr ragg rlang scales simstandard tibble tidyr]; }; unvotes = derive2 { name="unvotes"; version="0.3.0"; sha256="1vfyvwqfbxp29x2a0sqng6l5pkp2hc3hadp95ysnpannnsd6x0jw"; depends=[]; }; updog = derive2 { name="updog"; version="2.1.2"; sha256="0v8a5vlyv1gabjkxj5fnx05pfm1fqf549895gx6gsyzy2iz1652g"; depends=[assertthat doFuture doRNG foreach future ggplot2 ggthemes iterators Rcpp RcppArmadillo reshape2]; }; - uplift = derive2 { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[coin MASS penalized RItools tables]; }; upsetjs = derive2 { name="upsetjs"; version="1.10.11"; sha256="0wmd0hxa51d1aw7gglnkzcn8famrnrybypdaml7wi6yxgjy4wa5s"; depends=[htmlwidgets magrittr]; }; upstartr = derive2 { name="upstartr"; version="0.1.1"; sha256="09xzj423v0x4qvqfgyqpxyg63p8f1n5ppjc8swpyv1747ll5zmg8"; depends=[beepr crayon dplyr ggplot2 glue here knitr librarian magrittr openxlsx purrr readr readxl rmarkdown scales sf stringr textclean tgamtheme tidytext]; }; uptasticsearch = derive2 { name="uptasticsearch"; version="0.4.0"; sha256="19sf3zdj424pz4ms0xg4asplf2bczvhl8p22y13jna1g51xyv92a"; depends=[assertthat data_table futile_logger httr jsonlite purrr stringr uuid]; }; @@ -18278,7 +18362,7 @@ in with self; { urlshorteneR = derive2 { name="urlshorteneR"; version="1.5.1"; sha256="0vcjjb3r4cmfp5i0zcm3bmn6q4i4xazz1m994yka4gp34zqbz67n"; depends=[assertthat cli clipr httr jsonlite lubridate miniUI shiny stringr]; }; urltools = derive2 { name="urltools"; version="1.7.3"; sha256="04x3my655dd287cbsszbnf75q0swmjlxxrblcsay7a8n3df3a830"; depends=[Rcpp triebeard]; }; uroot = derive2 { name="uroot"; version="2.1-2"; sha256="0dsb1vdr2bwy64v889svhvkadg5jl9cl77mfiw79vl18b7ixjzxx"; depends=[]; }; - ursa = derive2 { name="ursa"; version="3.9.5"; sha256="11vhfb9qivwn9hph8p6x7xjqnh4lcwqz85rc55n5galcmnr812ln"; depends=[jpeg png rgdal]; }; + ursa = derive2 { name="ursa"; version="3.9.6"; sha256="19bc8sihvyrj4k8wj172b14kknzl5v7y4mpcv97f0pwij3ak7hhc"; depends=[jpeg png rgdal]; }; us_census_geoheader = derive2 { name="us.census.geoheader"; version="1.0.2"; sha256="17mss1ggaqkd0ac7g9chgqdrpi5xlbfkxsm1jvj48rp2jfwpp4jw"; depends=[tibble]; }; usa = derive2 { name="usa"; version="0.1.0"; sha256="0scdrd6b48n019f7qp77rrkqgmapnrknalq0hml1cy7m43llqf6d"; depends=[tibble]; }; usdampr = derive2 { name="usdampr"; version="1.0.1"; sha256="0x84hzsylg22jhvhn4xhkzv4g8j17g73cpj274n7f8cwzcmpj9sx"; depends=[dplyr httr jsonlite tidyr]; }; @@ -18288,20 +18372,21 @@ in with self; { usedist = derive2 { name="usedist"; version="0.4.0"; sha256="0ddf1zcalbrn293qmr9kdzz3x16fzc4k1bwb1pjmwnspisqfi8kj"; depends=[]; }; useful = derive2 { name="useful"; version="1.2.6"; sha256="0n50v1q75k518sq23id14jphwla35q4sasahrnrnllwrachl67v1"; depends=[assertthat dplyr ggplot2 magrittr Matrix plyr purrr scales]; }; usefun = derive2 { name="usefun"; version="0.4.8"; sha256="0jbwfr04y65rlc2aa6483w9qcdqa4bmcx76j4rp9fracfszjb1hg"; depends=[dplyr]; }; - usemodels = derive2 { name="usemodels"; version="0.1.0"; sha256="17cnjg7vw3f2jxkqlfvxh6kn891h49waf5k5a5vb4yaa2ay6nhp3"; depends=[cli dplyr purrr recipes rlang tidyr tune]; }; + usemodels = derive2 { name="usemodels"; version="0.2.0"; sha256="1dc74v4dnbj532cdphskm0y7sqgq1q4yzq634dbvq2bjpqdzf3si"; depends=[cli clipr dplyr purrr recipes rlang tidyr tune]; }; usethat = derive2 { name="usethat"; version="0.3.0"; sha256="0i6nw3vgll6i31l95iflhq88ssw86pmz46jgw8g6k6f58rgnykmc"; depends=[microservices purrr usethis withr]; }; usethis = derive2 { name="usethis"; version="2.1.5"; sha256="0lph2rxv7nq3h022gp8d50wbq5lwicnx85d2l5dx876wxhb9wlvx"; depends=[cli clipr crayon curl desc fs gert gh glue jsonlite lifecycle purrr rappdirs rlang rprojroot rstudioapi whisker withr yaml]; }; usfertilizer = derive2 { name="usfertilizer"; version="0.1.5"; sha256="05zjn39hqjjzzp4v4b1zbqq59205s7k0kikms951h57kbyvjz6vk"; depends=[tidyverse]; }; ushr = derive2 { name="ushr"; version="0.2.3"; sha256="1ygyqgxw849165lpk81f114kgx9015b9a9dngavjy3ffqzrbb41k"; depends=[dplyr ggplot2 tidyr]; }; uskewFactors = derive2 { name="uskewFactors"; version="2.0"; sha256="0ndi5987ak8sa7krgiglsibfg0k7z9j8fg47hg1m8ar0sq4r1yj6"; depends=[MASS MCMCpack mvtnorm tmvtnorm]; }; usl = derive2 { name="usl"; version="3.0.0"; sha256="1ahry485kpzfc0pzi4zm039d5mpv1jycmhdpn0n0zn0drcrlhw0g"; depends=[nlsr]; }; - usmap = derive2 { name="usmap"; version="0.5.2"; sha256="0p9f2g3nslxhvm8q7zwwfdw892fxnikr1x06z6rxnkibm4k48dj0"; depends=[]; }; + usmap = derive2 { name="usmap"; version="0.6.0"; sha256="1jdn9rl6kkfmr9d6wrg1673nr7xh5h14ynv2mx64xcn581c9jzis"; depends=[usmapdata]; }; + usmapdata = derive2 { name="usmapdata"; version="0.1.0"; sha256="13a4bj6ixqzfwm60r2c3i9zy96mr2hk77n720zs5i0i16acfnxav"; depends=[]; }; ustyc = derive2 { name="ustyc"; version="1.0.0"; sha256="1267bng2dz3229cbbq47w22i2yq2ydpw26ngqa1nbi3ma6hwqsv4"; depends=[plyr XML]; }; utc = derive2 { name="utc"; version="0.1.5"; sha256="1lhm5rhr78cxp3cz5n6j2zkhjphj7csk026xvvhkjqdi39rrq6i4"; depends=[]; }; utf8 = derive2 { name="utf8"; version="1.2.2"; sha256="1x6qg19z4qih9lk3mvnmx0vailm1khp5lylw4hlwz6rssj3yw6m7"; depends=[]; }; utile_tables = derive2 { name="utile.tables"; version="0.2.1"; sha256="0bj3rg4f9dby7qzf0m95dg626ws4nz5v2vn3m50x8g3pqq8m7lmp"; depends=[dplyr purrr rlang tidyselect utile_tools]; }; - utile_tools = derive2 { name="utile.tools"; version="0.2.6"; sha256="1l3l6x37290ism459kjfbgm2s0w7sa84q93nzrij1z250gv6g0rp"; depends=[lubridate purrr vctrs]; }; - utile_visuals = derive2 { name="utile.visuals"; version="0.3.0"; sha256="1653wds2126b82bfm22a17xgrkybw6an5j3apg53ag5ykak9pg87"; depends=[dplyr ggplot2 gridExtra purrr]; }; + utile_tools = derive2 { name="utile.tools"; version="0.2.7"; sha256="1hclxfq7ccrhsirpnpl3kpybd2zn4dc4pk49adqfik5lg9xi8kxh"; depends=[lubridate purrr vctrs]; }; + utile_visuals = derive2 { name="utile.visuals"; version="0.3.1"; sha256="1j13pvzgi8rv38clxl421ji3c47vg8scragg246xpgmd24yk64a5"; depends=[dplyr ggplot2 gridExtra purrr]; }; utilities = derive2 { name="utilities"; version="0.4.0"; sha256="0wyi4qs1lzqdjqkx06xn73fcv25mgqax02zqv15cjvblgq4lil35"; depends=[]; }; utility = derive2 { name="utility"; version="1.4.5"; sha256="0a11bxyg8la6yvxr04qbhay05jb2ihd7calc1zcisgj43kq6k7xd"; depends=[]; }; utilityFunctionTools = derive2 { name="utilityFunctionTools"; version="0.1.1"; sha256="1225nl83yka31j0adm1210kc89vs3hi9i2pqrykax109sgk0nw97"; depends=[spatstat_geom]; }; @@ -18309,6 +18394,7 @@ in with self; { utiml = derive2 { name="utiml"; version="0.1.7"; sha256="16l64scyipj7plwyv6whv3h040sgvzxx43jhjxyhrcdci4pqwh94"; depends=[mldr ROCR]; }; utr_annotation = derive2 { name="utr.annotation"; version="1.0.4"; sha256="0lldkd5fw86qxngjfvigmkdzynz0712wsk9p51xliqlavivvnpny"; depends=[AnnotationFilter AnnotationHub BiocGenerics biomaRt Biostrings data_table doParallel dplyr ensembldb foreach GenomicFeatures GenomicRanges IRanges keras readr rtracklayer stringr tidyr vcfR xml2]; }; uuid = derive2 { name="uuid"; version="1.0-3"; sha256="0il35jnci537r8zkinyiy5jp5q530p85ln6dswpj884zclrlcvj5"; depends=[]; }; + uwedragon = derive2 { name="uwedragon"; version="0.1.0"; sha256="00rrklym9ms74ad58cbn4xkibp8k5d12kcrnb68x7b27grvgfnqf"; depends=[gtools]; }; uwo4419 = derive2 { name="uwo4419"; version="0.3.0"; sha256="0hk5qhyarjxz7ngj5ak37vx0rak6xv0hfb4sdrsbci3kv5fqijv7"; depends=[DescTools dplyr ggplot2 gmodels haven magrittr psych RColorBrewer rio tibble tidyr]; }; uwot = derive2 { name="uwot"; version="0.1.11"; sha256="06ylzxmdh8jipbrzgqaiivd2lnqmbcva41cyvc0iyals6vqr1ksg"; depends=[dqrng FNN irlba Matrix Rcpp RcppAnnoy RcppProgress RSpectra]; }; vICC = derive2 { name="vICC"; version="1.0.0"; sha256="13lcs7wwj1xfbjf3q7r8ssf00jg5hr1vjp2pyw0r42iz7mx47xjv"; depends=[coda ggplot2 nlme Rdpack rjags]; }; @@ -18333,17 +18419,19 @@ in with self; { valr = derive2 { name="valr"; version="0.6.4"; sha256="0dd41irvibh6rwi52bw4zg4m7wpyihlp1kdkb8fdji3csw2fiz4k"; depends=[broom dplyr ggplot2 Rcpp readr rlang rtracklayer stringr tibble]; }; valse = derive2 { name="valse"; version="0.1-0"; sha256="0l3fdsgrmalifcxscjsxsfq07v8vipg0rdw6xh94q7xw5gdfsms0"; depends=[cowplot ggplot2 MASS reshape2]; }; valueEQ5D = derive2 { name="valueEQ5D"; version="0.7.2"; sha256="1w1l07s1rfxc1ba6kdq0l1vmb2qib6gmdm91706cmy1azfa92n4d"; depends=[testthat]; }; + valuemap = derive2 { name="valuemap"; version="2.0.0"; sha256="03n2jlmd80yi07vcnp0yjbr94dizf4in5hcqyhh70dl26i6qbmck"; depends=[devtools dplyr h3jsr htmltools leaflet sf]; }; vamc = derive2 { name="vamc"; version="0.2.1"; sha256="04kkli4xzf3gzvs215lzch8bl877cdq3awh3mz1k321zhsa1d0jn"; depends=[Rdpack]; }; vampyr = derive2 { name="vampyr"; version="1.1.1"; sha256="137sdv4shmjg1cpndjknrys2jkvyq3p9l11nrdh0bzp9xxc1wkh1"; depends=[corpcor EFA_MRFA fungible GPArotation lavaan moments PCovR psych semPlot]; }; + vandalico = derive2 { name="vandalico"; version="0.0.1"; sha256="0ipx9yq5wgpwphy1wzpa8jh605k3b5nkhplj4k0bym107010s3qd"; depends=[ROCR]; }; vanddraabe = derive2 { name="vanddraabe"; version="1.1.1"; sha256="094kd72slq0n3pk0p6zps241aszb9yql49h4mr007zf0kn8wlf8v"; depends=[bio3d cowplot fastcluster ggplot2 openxlsx reshape2 scales]; }; - vannstats = derive2 { name="vannstats"; version="1.2.1.19"; sha256="0pj162nnzas63xrf03b1v86mf3b1fq66n36xgf4a9k0zvxvy6aj4"; depends=[car dplyr formula_tools ggplot2 gplots MASS purrr rlang rstatix stringr tidyverse]; }; + vannstats = derive2 { name="vannstats"; version="1.2.2.27"; sha256="0ixad5934fpfyz831vc14300fkyyc95ia87w5jcqmk0l40sks4d7"; depends=[car dplyr formula_tools gdata ggplot2 gplots MASS purrr rlang rstatix stringr tidyverse]; }; vanquish = derive2 { name="vanquish"; version="1.0.0"; sha256="01di1j36npl7vnyhgsagvyf6j8bxcw867dwf9dgi7l1328s7lf0l"; depends=[changepoint e1071 ggplot2 VGAM]; }; vapour = derive2 { name="vapour"; version="0.8.5"; sha256="14sxn4vdig31vflrbyzpkqfwdcf9xj468wxd7yicvca0ibmr80yf"; depends=[Rcpp]; }; varEst = derive2 { name="varEst"; version="0.1.0"; sha256="0i6nsxl5w4zipzrmdvx8plmxr33n405w2qhks3s7zzs3kcys32v6"; depends=[caret glmnet lm_beta SAM]; }; varImp = derive2 { name="varImp"; version="0.4"; sha256="1bxlfqxi8iiv6raawl9668yhlmbak96ahd0ljzwrilnciqbclc2b"; depends=[measures party]; }; varSel = derive2 { name="varSel"; version="0.2"; sha256="05dk2s4lzd4sxrwsfs2yqsj08qrdrfwx1fs07nb9a8sd0in6vlpj"; depends=[]; }; varSelRF = derive2 { name="varSelRF"; version="0.7-8"; sha256="0h49rl1j13yfh97rsfsyh9s2c4wajny4rzms2qw77d0cavxqg53i"; depends=[randomForest]; }; - varTestnlme = derive2 { name="varTestnlme"; version="1.3.0"; sha256="0hpzwzfwip3ly4ayr7whqdxch7l73aizgik7rkkm62js01iz7y53"; depends=[alabama anocva corpcor doParallel foreach lme4 lmeresampler Matrix merDeriv msm mvtnorm nlme quadprog saemix]; }; + varTestnlme = derive2 { name="varTestnlme"; version="1.3.1"; sha256="0ql278pbifxkkz560yd9swlky322yb4bwyb043x9kf86fhf6njvj"; depends=[alabama anocva corpcor doParallel foreach lme4 Matrix merDeriv msm mvtnorm nlme nlmeU purrr quadprog saemix]; }; varband = derive2 { name="varband"; version="0.9.0"; sha256="16z66rx7xq5zan8pnw100c9r5syw1ml4hgzi9mch52aia23v21p9"; depends=[Rcpp RcppArmadillo]; }; varbin = derive2 { name="varbin"; version="0.2.1"; sha256="0gcynwc0vx7qlp3z0pcc4i7mjlnxkwy8ydxz2wr244fw32qgp4kq"; depends=[rpart]; }; varbvs = derive2 { name="varbvs"; version="2.5-16"; sha256="0pji7vqpbih01y7n0q6zpxhfszznzig4z3hmmpr4jqpdplv13x8d"; depends=[lattice latticeExtra Matrix nor1mix Rcpp]; }; @@ -18369,7 +18457,7 @@ in with self; { vbsr = derive2 { name="vbsr"; version="0.0.5"; sha256="1avskbxxyinjjdga4rnghcfvd4sypv4m39ysfaij5avvmi89bx3b"; depends=[]; }; vccp = derive2 { name="vccp"; version="0.1.1"; sha256="1c0mk46c74kj5y9rfniywbxxmwb2z16szzpq6b2sw8q0qi1cf5ji"; depends=[mosum mvtnorm VineCopula]; }; vcd = derive2 { name="vcd"; version="1.4-9"; sha256="13sn77qdcyll9lz7nab0bxzfvpgj8f5rl2cq5ylpz8pibynj1d55"; depends=[colorspace lmtest MASS]; }; - vcdExtra = derive2 { name="vcdExtra"; version="0.7-5"; sha256="0f822xmgw4iyzyz2p9bwiklj9b6faa2wy632p2895h1grgvnnxmd"; depends=[ca gnm MASS vcd]; }; + vcdExtra = derive2 { name="vcdExtra"; version="0.7-6"; sha256="1y8yzy5686hn4pp10pg2kh5ga3z60h1849a3didl0fayvml6091q"; depends=[ca gnm MASS vcd]; }; vcfR = derive2 { name="vcfR"; version="1.12.0"; sha256="0lhxb3ac4fafwik9q3cds46svzf0hyca8k54chw3dpk50c0zz1yx"; depends=[ape dplyr magrittr memuse pinfsc50 Rcpp stringr tibble vegan viridisLite]; }; vcmeta = derive2 { name="vcmeta"; version="1.0.0"; sha256="18jg3kqdk9162qvhkmrvq0j86nq82iwws20wrfgb4hy1w63bzfz3"; depends=[ggplot2 mathjaxr Rdpack]; }; vcov = derive2 { name="vcov"; version="0.0.1"; sha256="1w89mr8dk6436bxap28rszajgm9k7sjfqsr1i4p68dlhw8zk4yq1"; depends=[]; }; @@ -18408,7 +18496,7 @@ in with self; { versionsort = derive2 { name="versionsort"; version="1.0.0"; sha256="0inyzs6y4dsxwyfpwl90rqx11dyc3j3n4347zyqvyqp5icg7x5m0"; depends=[]; }; vertexenum = derive2 { name="vertexenum"; version="1.0.2"; sha256="16ywz3z1kzhb3knhhi2i5igm3djdaaxyyrw69wkc5saa7ayhdb4y"; depends=[numbers]; }; vesselr = derive2 { name="vesselr"; version="0.2.1"; sha256="1wzprnpiv04gxhqgki36gp1a0xj9l3mchllphwkfsdja4axq3prk"; depends=[oro_nifti pbapply pbmcapply]; }; - vetiver = derive2 { name="vetiver"; version="0.1.1"; sha256="0q37mgwqy69q6vkkgjr9mhc8gl9k0sdf7pp7bym1fag41jspwfzp"; depends=[butcher cli generics glue hardhat httr jsonlite pins plumber purrr rapidoc readr rlang tibble vctrs withr]; }; + vetiver = derive2 { name="vetiver"; version="0.1.3"; sha256="1yn4vhnkgqqgzkbg2qjpf8n3pm2xdx2p8plxb4y1xffbpzsspjan"; depends=[butcher cli curl generics glue hardhat httr jsonlite lifecycle pins plumber purrr rapidoc readr renv rlang tibble vctrs withr]; }; vetools = derive2 { name="vetools"; version="1.3-28"; sha256="1470xgqdq9n5kj86gdfds15k3vqidk3h99zi3g76hhyfl8gyl1c0"; depends=[lubridate maptools plyr scales sp stringr tis xts]; }; vetr = derive2 { name="vetr"; version="0.2.13"; sha256="0wbhi5wzwvvp645dg8na8mh1yxvvfzwdm34xqrqkzh6cvlvlby4c"; depends=[]; }; vfcp = derive2 { name="vfcp"; version="1.4.0"; sha256="0zj1ihqdx5x1695al1xyi8k001yw8x7gdss72myxlnh7b4flnp9m"; depends=[copula extraDistr stringr]; }; @@ -18428,12 +18516,11 @@ in with self; { vines = derive2 { name="vines"; version="1.1.5"; sha256="057d2fdh03cq9kh4vz94arqscahmz14xbr2g59l0vn205lnyilf1"; depends=[ADGofTest copula cubature TSP]; }; violinplotter = derive2 { name="violinplotter"; version="3.0.0"; sha256="02hyc85bmpc4lzpy4yay73gz4v00wns1ghkkf9sljl3kdgybmyi2"; depends=[]; }; vioplot = derive2 { name="vioplot"; version="0.3.7"; sha256="1dmdasp3jldc41233z6r08w3j76vyyp9m3jrj7n4ahk48yd5siq6"; depends=[sm zoo]; }; - viopoints = derive2 { name="viopoints"; version="0.2-1"; sha256="0cpbkkzm1rxch8gnvlmmzy8g521f5ang3nhlcnin419gha0w6avf"; depends=[]; }; vip = derive2 { name="vip"; version="0.3.2"; sha256="1qsvyfms79sn46jdmq7q5r0d6gwjqhr9pll1y776rx0bj7vx1ax5"; depends=[ggplot2 gridExtra magrittr plyr tibble]; }; vipor = derive2 { name="vipor"; version="0.4.5"; sha256="112gc0d7f8iavgf56pnzfxb7hy75yhd0zlyjzshdcfbnqcd2a6bx"; depends=[]; }; viridis = derive2 { name="viridis"; version="0.6.2"; sha256="048kwhbhd49g86cq11fl7vm0whwhjl5gs9xjn040lwcjv78qrdb9"; depends=[ggplot2 gridExtra viridisLite]; }; viridisLite = derive2 { name="viridisLite"; version="0.4.0"; sha256="0siwr0vq80gs3sbyd542zjb0cl9av5zqdm0fqnym5g6ribf5b6c4"; depends=[]; }; - virtualPollen = derive2 { name="virtualPollen"; version="1.0.0"; sha256="16q1smwh3ryids3pa7lb4i4pxmjjyl449w6fikkrm9ybj1k8gfcf"; depends=[cowplot ggplot2 mgcv plyr tidyr viridis]; }; + virtualPollen = derive2 { name="virtualPollen"; version="1.0.1"; sha256="0caiyl7h9qn3nv34dafv5rs4v7n4avyjpng0rkz6aw3ri1zn8sa0"; depends=[cowplot ggplot2 mgcv plyr tidyr viridis]; }; virtualspecies = derive2 { name="virtualspecies"; version="1.5.1"; sha256="0l86awcjq6i1lqax596xy5qfmzwiz3cwp2rczvgg37fdrym97cm3"; depends=[ade4 raster rworldmap sp]; }; virtuoso = derive2 { name="virtuoso"; version="0.1.8"; sha256="1smb8sjfqcp3jflplgf92swasxzrp72fnnqwyisf87pjknm91qsc"; depends=[curl DBI digest fs ini odbc processx ps rappdirs]; }; virustotal = derive2 { name="virustotal"; version="0.2.2"; sha256="020kwhki5740857zd24xm18dg3whzhf527qhmfx1cxyqyld404wy"; depends=[httr plyr]; }; @@ -18450,7 +18537,7 @@ in with self; { visreg = derive2 { name="visreg"; version="2.7.0"; sha256="070yhyxxh3w16i54k790n47bgcjn4b10b6g1z553x6afjc3l3a6d"; depends=[lattice]; }; vistime = derive2 { name="vistime"; version="1.2.1"; sha256="0fdjbzdwsy6fby6rf8l940qwdkbs43is0jy7xkf6gg6vlgc9jgni"; depends=[assertive_types ggplot2 ggrepel plotly RColorBrewer rlang]; }; vistributions = derive2 { name="vistributions"; version="0.1.2"; sha256="1nzkbyqks38n7gp55iqhrlxqyfwxk4fvqzi9vsb45h0m0hlmwhxr"; depends=[ggplot2 magrittr]; }; - visualFields = derive2 { name="visualFields"; version="1.0"; sha256="017djw2k9h9dqrndmij061ihjfyx2fdady1vbip09683lyqhggfi"; depends=[boot combinat deldir dplyr DT gtools Hmisc htmlTable oro_dicom plotrix polyclip pracma rlang shiny shinyjs XML]; }; + visualFields = derive2 { name="visualFields"; version="1.0.1"; sha256="1z62xappwjdv9f7ql5spydkb626rdj3hvpvzy3d71fwm0y3qwki3"; depends=[boot combinat deldir dplyr DT gtools Hmisc htmlTable oro_dicom plotrix polyclip pracma rlang shiny shinyjs XML]; }; visualize = derive2 { name="visualize"; version="4.4.0"; sha256="1k3jpvj1yysxc4g1a1w3m1y91104aqxqv8jh9qdd23gwy7a29525"; depends=[]; }; visualpred = derive2 { name="visualpred"; version="0.1.0"; sha256="19jq9h9kiv4vbzqz8zrv5gqb1bprq5jy7mcxvdwpfnna2rja6q4z"; depends=[data_table dplyr e1071 FactoMineR gbm ggplot2 ggrepel magrittr MASS MBA mltools nnet pROC randomForest]; }; visvow = derive2 { name="visvow"; version="1.3.3"; sha256="01mpiyc893sx8zhx6ddzhdqcgsssz516s4wm0sfkh5fpaz6h1mn5"; depends=[Cairo DT formattable ggdendro ggplot2 ggrepel MASS PBSmapping plot3D plyr pracma psych Rdpack readxl Rtsne shiny shinyBS shinybusy splitstackshape svglite tidyr tikzDevice WriteXLS]; }; @@ -18465,6 +18552,7 @@ in with self; { vlad = derive2 { name="vlad"; version="0.2.2"; sha256="0c3zfjm5nj7iisfnl822sk8wdszv6hcsaf51sn7aqnlp579hq2jk"; depends=[BH checkmate dplyr magrittr Rcpp RcppArmadillo tidyr]; }; vlda = derive2 { name="vlda"; version="1.1.5"; sha256="17xn8qqh043dm05ib3h4l1qx07wxncf5d06x9l1wl6jbkvnsm2nq"; depends=[dplyr ggiraph ggplot2 ggrepel ggsci]; }; vmd = derive2 { name="vmd"; version="0.1.0"; sha256="17c06a9l6i90ivpvf3rgv6yrsqv36qmywmmy92y5b81zqhgmh907"; depends=[ggplot2 magrittr R6 Rcpp reshape2 scales]; }; + vmdTDNN = derive2 { name="vmdTDNN"; version="0.1.0"; sha256="1vxlqfcdkwajz9r6rmz48x87csl6d7dqshabhgwnvgvy206jh3b7"; depends=[forecast nnfor vmd]; }; vmeasur = derive2 { name="vmeasur"; version="0.1.4"; sha256="17rqr8zpfnq3f0d3yi9w09wvrbq79g4w7rkqf4l2wyd8ic5npwb0"; depends=[av crayon doFuture dplyr foreach future ggplot2 ggpubr imager magrittr pdftools pracma progressr purrr readr rlang scales stringr svDialogs tidyr]; }; vmr = derive2 { name="vmr"; version="0.0.3"; sha256="1qxcbmf71xwlmi5wyjs3a86ywjd0cj6f86kyq5bpw4ykn797kciw"; depends=[curl jsonlite]; }; vntrs = derive2 { name="vntrs"; version="0.1.0"; sha256="0ffjjzcs7i4zli7bn83gkgi0q7dmgyxrhv9l3gdambma9hsig45c"; depends=[trust]; }; @@ -18490,12 +18578,13 @@ in with self; { vprr = derive2 { name="vprr"; version="0.1.0"; sha256="0wxcaw6r56wd8sxr5xc10xbhg9cbfz82z4cn4x0w8qhrzwl4v0zl"; depends=[dplyr ggplot2 gridExtra gsw interp lubridate magick metR oce stringr tidyr usethis]; }; vrcp = derive2 { name="vrcp"; version="0.1.1"; sha256="1wrch1dqy752gkj24h1dgi2x3kf1797xj4pf1s9mszf3x3ic905d"; depends=[ggplot2]; }; vrmlgen = derive2 { name="vrmlgen"; version="1.4.9"; sha256="0lifhhf41yml4k83wpkssl14jgn8jaw1lcknwbci1sd8s1c4478l"; depends=[]; }; - vrnmf = derive2 { name="vrnmf"; version="1.0.1"; sha256="05azg867vir437rsi87sbx146fl3y0kf16ky09hs1bprmhvf2xvd"; depends=[ica lpSolveAPI Matrix nnls quadprog]; }; + vrnmf = derive2 { name="vrnmf"; version="1.0.2"; sha256="0n0kmzhygaii9kipcmr943s0vcf8brxgsk25m9illd4fij6nwpp2"; depends=[ica lpSolveAPI Matrix nnls quadprog]; }; vroom = derive2 { name="vroom"; version="1.5.7"; sha256="1plz20x6s01gkkcac51lhx4r2s024pgh778ri7y25hkiiwacp1yh"; depends=[bit64 cli cpp11 crayon glue hms lifecycle progress rlang tibble tidyselect tzdb vctrs withr]; }; vrtest = derive2 { name="vrtest"; version="0.97"; sha256="00hdgb0r18nwv3qay97b09kqqw9xqsbya06rrjyddqh9r6ggx1y0"; depends=[]; }; vscc = derive2 { name="vscc"; version="0.2"; sha256="1p14v8vd8kckd44g4dvzh51gdkd8jvsc4bkd2i4csx8vjiwrni5w"; depends=[mclust teigen]; }; vsd = derive2 { name="vsd"; version="0.1.0"; sha256="18whnvary4glblzx1vxf3yzsllnnnbnyijwhbw7bi3agppnwrf22"; depends=[dplyr flexsurv ggplot2 ggpubr magrittr muhaz survival survminer]; }; vsgoftest = derive2 { name="vsgoftest"; version="1.0-1"; sha256="0vypi4cf04bljmx3jwq3ixs86ivd6p7a825ik189y71fyqg9g70v"; depends=[fitdistrplus Rcpp]; }; + vsp = derive2 { name="vsp"; version="0.1.0"; sha256="0fa3fdjhq59gpx0ac38ska0sfhq07g9x3vhbvrvlpc18kxwj5mzh"; depends=[ggplot2 glue invertiforms LRMF3 magrittr Matrix rlang RSpectra tibble withr]; }; vstsr = derive2 { name="vstsr"; version="1.1.0"; sha256="071nfxkwwpbp2d8khxq7d1pp268pa1fcfj619bs6xwg4wk9srr3k"; depends=[httr jsonlite R6 RCurl]; }; vtable = derive2 { name="vtable"; version="1.3.3"; sha256="1a1rw5n3j2ylhg0sjbdszkw5l9971s7lih9shmyhpikx79j4qgm5"; depends=[haven kableExtra knitr rstudioapi sjlabelled]; }; vtreat = derive2 { name="vtreat"; version="1.6.3"; sha256="181nsjl811m3k1123bvgnnwr253sc2mbj4ljzmawz9wl7dfbwfij"; depends=[digest wrapr]; }; @@ -18504,16 +18593,15 @@ in with self; { vudc = derive2 { name="vudc"; version="1.1"; sha256="0zxz6n3ixa3xjzcinky8ymqjx9w8y8z65mz8d84dl00mxzkmkz4h"; depends=[]; }; vueR = derive2 { name="vueR"; version="0.5.3"; sha256="0am4iwgadi9c9f7zm5zx3nrzyhy7w1qgp9rkyypzwb6bicjjb9cz"; depends=[htmltools htmlwidgets]; }; vwline = derive2 { name="vwline"; version="0.2-2"; sha256="1hilr996xn5wh8kfyab55w2i1c02a8x909h4ahag5q6s7603qng5"; depends=[gridBezier polyclip]; }; - vwr = derive2 { name="vwr"; version="0.3.0"; sha256="1h790vjcdfngs1siwldvqz8jrxpkajl3266lzadfnmchfan1x7xv"; depends=[lattice latticeExtra stringdist]; }; wBoot = derive2 { name="wBoot"; version="1.0.3"; sha256="08qgkkv6jvqmxq5gvfp7jbrc3k8mxajfww7k8a3p8888aq411p7q"; depends=[boot simpleboot]; }; wCorr = derive2 { name="wCorr"; version="1.9.5"; sha256="10mnrs5ymc3ms1z5vs0h05rjq1642n3asvm77x7lxq9qwx67s3vn"; depends=[minqa mnormt Rcpp RcppArmadillo]; }; + wINEQ = derive2 { name="wINEQ"; version="1.0.1"; sha256="0vsi930gp7w2ddqfy7dw82w89v7vrrv8x5zg9j8bhiz4kaf53153"; depends=[dplyr sampling]; }; wISAM = derive2 { name="wISAM"; version="0.2.8"; sha256="0c5ic98ihpzkycsj9wg0127civm4w1rmkkw6zsjp8sfn20cl8a8z"; depends=[MASS]; }; wNNSel = derive2 { name="wNNSel"; version="0.1"; sha256="19j2yz6lvkxpmjr0vv6pjc7j1c02y0hb3gay5sy1y0xk706aggb5"; depends=[]; }; wPerm = derive2 { name="wPerm"; version="1.0.1"; sha256="0f3v0kba87wkwyii0pzvs6a8ja897aifpvwkvryl2hzxxxaml7z4"; depends=[]; }; - wSVM = derive2 { name="wSVM"; version="0.1-7"; sha256="0c7rblzgagwfb8mmddkc0nd0f9rv6kapw8znpwapv3fv0j2qzq7h"; depends=[MASS quadprog]; }; wTO = derive2 { name="wTO"; version="1.6.3"; sha256="1cgbw37b734ipg5qhjsil55qysfn6xmymj1q99ybkadi0axp55nn"; depends=[data_table igraph magrittr plyr reshape2 shiny som visNetwork]; }; waccR = derive2 { name="waccR"; version="0.1.0"; sha256="092p1bibyqx1gcrch68l9ilzilg5aqf46b6iagm562292cfi074l"; depends=[dplyr lubridate magrittr rvest tibble xml2]; }; - wacolors = derive2 { name="wacolors"; version="0.2.1"; sha256="03ax5r3qshfdrywqwyhz5laqvwajkvvzwq8sh9a6mi3dgr7vcd0m"; depends=[ggplot2 scales]; }; + wacolors = derive2 { name="wacolors"; version="0.3.1"; sha256="0c5ja70vgb2f1l2k5j7amxhkydbj44nc290ccr816xglj31nvsiy"; depends=[ggplot2 scales]; }; wactor = derive2 { name="wactor"; version="0.0.1"; sha256="0dc7413jb3yz0nns2lc93w32wv6m4sg17j2ip63gc12vis0nf855"; depends=[ggplot2 Matrix R6 text2vec tibble tokenizers xgboost]; }; waffle = derive2 { name="waffle"; version="0.7.0"; sha256="1qjmai33p96cyavi9lgi6k30h6fj7db5sr569v9jf4kwx92c61df"; depends=[extrafont ggplot2 gridExtra gtable RColorBrewer]; }; wahc = derive2 { name="wahc"; version="1.0"; sha256="1324xhajgmxq6dxzpnkcvxdpm2m3g47drhyb2b3h227cn3aakxyg"; depends=[]; }; @@ -18521,15 +18609,15 @@ in with self; { wakefield = derive2 { name="wakefield"; version="0.3.6"; sha256="1rssh6v8m6fim2pvm4cjw8cbni77bv5qp0rwi6vwdl3jhi5zws7n"; depends=[chron dplyr ggplot2 stringi]; }; wal = derive2 { name="wal"; version="0.1.0"; sha256="0n81c2i2wzmy33kk1k4zjjgv1irh8xqw05clif8n86qr4m0a01sv"; depends=[freesurferformats imager jpeg png spacesXYZ]; }; waldo = derive2 { name="waldo"; version="0.3.1"; sha256="16q1xjbl9g04l1r1x3nid9hmz1sa35q6j33bigdzh4y4zcd8qb7c"; depends=[cli diffobj fansi glue rematch2 rlang tibble]; }; - walker = derive2 { name="walker"; version="1.0.3-1"; sha256="05pqipf4jx6syfqdmh0cs2pljbp1acsy2igljmxbywfniabj3fqp"; depends=[bayesplot BH coda dplyr ggplot2 Hmisc KFAS loo Rcpp RcppArmadillo RcppEigen RcppParallel rlang rstan rstantools StanHeaders]; }; + walker = derive2 { name="walker"; version="1.0.4"; sha256="0qfvzg6wchl3933f2zahzl665badyj12161h0rz8a92rji004p8i"; depends=[bayesplot BH coda dplyr ggplot2 Hmisc KFAS loo Rcpp RcppArmadillo RcppEigen RcppParallel rlang rstan rstantools StanHeaders]; }; walkscoreAPI = derive2 { name="walkscoreAPI"; version="1.2"; sha256="1c2gfkl5yl3mkviah8s8zjnqk6lnzma1yilxgfxckdh5wywi39fx"; depends=[]; }; - wallace = derive2 { name="wallace"; version="1.1.0"; sha256="0rbk6cma6w16aakqg0ibx2c6ziyb3k0lbsdp7wn3pk9zi8xrs5qk"; depends=[dismo dplyr DT ENMeval jsonlite leaflet leaflet_extras magrittr raster RColorBrewer rgdal rgeos rmarkdown shiny shinyjs shinythemes sp spocc spThin zip]; }; + wallace = derive2 { name="wallace"; version="1.1.3"; sha256="0q9nppyiijzbmdi6dvgnh8l8i1vassqcl5wc7bv08hidxbkw3pqs"; depends=[dismo dplyr DT ecospat ENMeval jsonlite leaflet leaflet_extras magrittr raster RColorBrewer rgdal rgeos rmarkdown shiny shinyjs sp spocc spThin zip]; }; wally = derive2 { name="wally"; version="1.0.10"; sha256="1d03vxn6q7v0nsrkd7dxkkv3siysgicv6c13fkvwmypln9vsl6sl"; depends=[data_table prodlim riskRegression]; }; walmartAPI = derive2 { name="walmartAPI"; version="0.1.5"; sha256="1nng8izncj2nmmpywn1ggpzvjh8q7y3q6260qhy9kbmvrrl26spf"; depends=[dplyr glue httr magrittr purrr stringr tibble]; }; - walrus = derive2 { name="walrus"; version="1.0.3"; sha256="1nk2glcvy4hyksl5ipq2mz8jy4fss90hx6cq98m3w96kzjni6jjj"; depends=[ggplot2 jmvcore R6 WRS2]; }; + walrus = derive2 { name="walrus"; version="1.0.4"; sha256="0h1cxkkb53498flx2fbnl3w7pjqs8rgz0hc5nb69n6a4aj6vhyfk"; depends=[ggplot2 jmvcore R6 WRS2]; }; wand = derive2 { name="wand"; version="0.5.0"; sha256="0y9xmh9a93lnadg83i223j2nf77jazz8m1ck1bmdf5jwj4vyzaqa"; depends=[]; }; warabandi = derive2 { name="warabandi"; version="0.1.0"; sha256="0b1g2fpshhkd15b6fz4v3qwf425p5ahbh57acclqq6znl1acl1hg"; depends=[flextable lubridate readtext]; }; - warbleR = derive2 { name="warbleR"; version="1.1.26"; sha256="1im3ifh1dwj0w8zz0j6023z615qvybm7ycy25sp9ynh67p9yza7v"; depends=[bioacoustics crayon dtw fftw knitr monitoR NatureSounds pbapply Rcpp RCurl rjson seewave stringi tuneR]; }; + warbleR = derive2 { name="warbleR"; version="1.1.27"; sha256="1fd008v3di7z5ixljk5zwaw2wcc4zfqlnw9546894ybw5m9jsk26"; depends=[bioacoustics crayon dtw fftw knitr monitoR NatureSounds pbapply Rcpp RCurl rjson seewave stringi tuneR]; }; warp = derive2 { name="warp"; version="0.2.0"; sha256="0s0acddc5h14245hi1faycxp0fyvw6nlgaz2df7da4fpyd2f638f"; depends=[]; }; warpMix = derive2 { name="warpMix"; version="0.1.0"; sha256="13zbl4aifhg7j5b3vpwgzgs09hr7yblz0rckmj5qh40s78j8cpfn"; depends=[fda fields lme4 MASS nlme reshape2]; }; washdata = derive2 { name="washdata"; version="0.1.3"; sha256="0m7rwwi189sbsv3144x14jqmfax30f6ri1pisy47yggmmjpdplps"; depends=[]; }; @@ -18540,7 +18628,7 @@ in with self; { waterYearType = derive2 { name="waterYearType"; version="1.0.1"; sha256="09brbqcd41khycz9lhn84w68wpk8lsdnzb6lzc10gm5s5ambgj06"; depends=[]; }; waterfall = derive2 { name="waterfall"; version="1.0.2"; sha256="0jy6l9mx0dixwnkychdl18sf4xh73pm0qd1jyxp9rlnv1vcragjp"; depends=[lattice]; }; waterfalls = derive2 { name="waterfalls"; version="0.1.2"; sha256="01gby1mlhrwcalizpywxcakkx2zifswb0188nrl6z9dkkd1866lm"; depends=[ggplot2]; }; - waterquality = derive2 { name="waterquality"; version="0.2.6"; sha256="0386sd772l6vm5pdjj21i5byc6673hwbdixm0av6nc82pqf524xr"; depends=[caret dplyr magrittr pingr purrr raster rgdal vctrs]; }; + waterquality = derive2 { name="waterquality"; version="0.3.0"; sha256="0aikgz4x2ny2q7mnxsyk5pl87yb9gq6pcvvnj1s32383683j5ys9"; depends=[caret dplyr magrittr pingr purrr raster rgdal vctrs]; }; wavScalogram = derive2 { name="wavScalogram"; version="1.1.1"; sha256="15y5gqp39jx0ggsimmf7k22qg1142c55apd04q05jqi50ljzda70"; depends=[abind colorRamps fields]; }; waveband = derive2 { name="waveband"; version="4.7.1"; sha256="1ja8jfvv790s6ih50iz6zykpq06dbzqi28cp8vyqcd1iz2bkdixp"; depends=[wavethresh]; }; waved = derive2 { name="waved"; version="1.2"; sha256="0zv4rgazk9s295pggzfa7sc062zv68dgds1ngxcz7vg1fx0qkgxg"; depends=[]; }; @@ -18548,7 +18636,7 @@ in with self; { wavelets = derive2 { name="wavelets"; version="0.3-0.2"; sha256="07706rsjdmzj46ib2kfm5lfk4bnm2wfw7rby0ixs6x0myyzxdl92"; depends=[]; }; wavemulcor = derive2 { name="wavemulcor"; version="3.1.2"; sha256="0a9qhcgf0l3zpwq8m476py94wb4rasy6a8xj302y6kwg3gvh1smm"; depends=[plot3D RColorBrewer waveslim]; }; waver = derive2 { name="waver"; version="0.2.1"; sha256="1kl14cd96fwrqvk35sqbgi8bf31gc2ccxxy5d1v46scwyqkb0g5l"; depends=[geosphere rgdal rgeos sp]; }; - waves = derive2 { name="waves"; version="0.2.1"; sha256="04zf4bfdranwmml1i9vz7p59siw199k873g7yjdhc7cncjdc6ain"; depends=[caret dplyr ggplot2 lifecycle magrittr pls prospectr randomForest readr rlang scales spectacles stringr tibble tidyr tidyselect]; }; + waves = derive2 { name="waves"; version="0.2.3"; sha256="0k79mdvr08hbncxr7920blfkjn2pwrsi6qbcqk4bafs8s9c361bq"; depends=[caret dplyr ggplot2 lifecycle magrittr pls prospectr randomForest readr rlang scales spectacles stringr tibble tidyr tidyselect]; }; waveslim = derive2 { name="waveslim"; version="1.8.2"; sha256="0ibivnhz0l06sss5rrrcvyiwg3qpbyk3qn4vx4pp90kj09x4yg0k"; depends=[]; }; wavethresh = derive2 { name="wavethresh"; version="4.6.8"; sha256="1nz74bm7pgck1i9c28svxnic8wkwkm5dhc8bhrxiih5wxb36kcwk"; depends=[MASS]; }; waydown = derive2 { name="waydown"; version="1.1.0"; sha256="1yjx9cd8h8rsi44s7dcqrvfmsbjhw7vkg2z7bl4knsgbki0c978g"; depends=[Matrix numDeriv]; }; @@ -18561,7 +18649,6 @@ in with self; { wcep = derive2 { name="wcep"; version="1.0.0"; sha256="1hpakygvh3b64i5hwkriwq5g8vnvghvgdj0jn9m59j43050k32cy"; depends=[coin dplyr progress tidyr]; }; wdm = derive2 { name="wdm"; version="0.2.2"; sha256="1pidlfp67x3wnmkp0qgna4vz29qx09xsy7gfbqzrjqkdi7q1dihi"; depends=[Rcpp]; }; wdman = derive2 { name="wdman"; version="0.2.5"; sha256="1yf41lsrr9dbf5n4f5hv9mlmzl736fhnp9gxkm2g9apws6gsig02"; depends=[assertthat binman processx semver yaml]; }; - wdnr_gis = derive2 { name="wdnr.gis"; version="0.1.2"; sha256="03z9qayrv34lgajvwg77b0h7z65r04wzlkaazpdfxq9wk027g3a9"; depends=[arcpullr dplyr ggplot2 httr jsonlite rlang sf]; }; wdpar = derive2 { name="wdpar"; version="1.3.2"; sha256="0fgypgv6dl22ni90m7g2fsw56b8ml9pvxrqkwkzmxnlb8hmg0r1k"; depends=[assertthat cli countrycode curl httr lwgeom progress rappdirs RSelenium sf sp tibble wdman xml2]; }; weaana = derive2 { name="weaana"; version="0.1.1"; sha256="1wjvn78fkgc28ag1idy7h6sm0rvl57wbqdbxgbl3g5xv844vh8ls"; depends=[dplyr lubridate magrittr reshape2 rlang settings tibble]; }; weakARMA = derive2 { name="weakARMA"; version="1.0.2"; sha256="1i4hkjjx35jkvg7jbiv1szmlnj1nx1s77sa7361407i7wmf41xkf"; depends=[CompQuadForm MASS matrixStats vars]; }; @@ -18611,11 +18698,12 @@ in with self; { wgaim = derive2 { name="wgaim"; version="2.0-1"; sha256="1qiyfkpsbzjr9xsq5kqq6rlqpndngkn2irdfh3gyi45h6hn118j4"; depends=[ggplot2 qtl]; }; wgeesel = derive2 { name="wgeesel"; version="1.5"; sha256="0lybvsq5168cjybzv2dbyx2z8aakcx7i7ivm8zc90haiispm9n5x"; depends=[bindata CRTgeeDR geepack MASS PoisNor]; }; whSample = derive2 { name="whSample"; version="0.9.6.2"; sha256="1dkw155xk36r9vmkqxlg2vw45nbpypivd8q5v3i5995biyib4l2k"; depends=[bit64 data_table dplyr magrittr openxlsx purrr]; }; - wheatmap = derive2 { name="wheatmap"; version="0.1.0"; sha256="1c1xvzy194vw3idkwkqp9kyrfldzczj30cl15jw1bbnw87zcwdzy"; depends=[colorspace RColorBrewer]; }; + wheatmap = derive2 { name="wheatmap"; version="0.2.0"; sha256="064idlrnb85xxav39gp3n854fic6514khvazrf5d0x48crpzyvdp"; depends=[colorspace RColorBrewer]; }; whereami = derive2 { name="whereami"; version="0.1.9"; sha256="0mjq9haacsf0zkgh7xxx8dr67hnw5ijjdhaz8c69mfjmd2zfzfwq"; depends=[cli jsonlite rstudioapi]; }; whereport = derive2 { name="whereport"; version="0.1"; sha256="1gdqzr2hrnpxbwl7cfps4m3xja8wkgwfs50i2nailybympvdnxm4"; depends=[dplyr]; }; + whippr = derive2 { name="whippr"; version="0.1.0"; sha256="1anrbrb9bp9kll70wjc1861incmjp85w1cw7y9r7pah26ajvxm80"; depends=[broom cli dplyr ggplot2 glue lubridate magrittr minpack_lm nlstools patchwork pillar purrr readxl rlang stringr tibble tidyr usethis zoo]; }; whisker = derive2 { name="whisker"; version="0.4"; sha256="1a7vz0dk95xfjvi38wbpw8vmf5qn3g8p490msz2rw0piwidmk1ks"; depends=[]; }; - whitebox = derive2 { name="whitebox"; version="2.0.0"; sha256="0qw96ma3hbwqc258chcsjgg0c6c3xi6d1q0iin3rdr8nvczinxma"; depends=[]; }; + whitebox = derive2 { name="whitebox"; version="2.1.0"; sha256="17g2kq21bmgq3ywhld14gxrns5l1ghahdi4vim849ybi703x37xn"; depends=[]; }; whitechapelR = derive2 { name="whitechapelR"; version="0.3.0"; sha256="0mnq5m59mw8w5g1p0h2xzlz738j397b3444km59bm5yln3j0nsbi"; depends=[igraph plyr]; }; whitening = derive2 { name="whitening"; version="1.3.0"; sha256="13c06sk4n2821pskqi8vk61khyhswddcir9qr8zy15czn5id3i1j"; depends=[corpcor]; }; whitestrap = derive2 { name="whitestrap"; version="0.0.1"; sha256="1jcnxqxvkhyz9j6jay5834ncv5fxb9qiyyyj3b8al75mqknmn8ra"; depends=[]; }; @@ -18642,14 +18730,13 @@ in with self; { wilson = derive2 { name="wilson"; version="2.4.2"; sha256="050hi6rigs024is1ry0yymqapgqfhzpp0ghk5ya028k71k22lksx"; depends=[circlize colourpicker ComplexHeatmap data_table DESeq2 DT factoextra FactoMineR ggplot2 ggrepel gplots heatmaply log4r openssl plotly plyr R6 RColorBrewer reshape rintrojs rje rjson RJSONIO scales shiny shinycssloaders shinydashboard shinyjs shinyWidgets viridis zip]; }; winRatioAnalysis = derive2 { name="winRatioAnalysis"; version="0.1.0"; sha256="1msvc06bfzw9clinxbvr5fdw38dff0c0xii46182nwnk5kj0libr"; depends=[data_table JM Matrix MLEcens mvtnorm nlme plyr pssm survival]; }; winch = derive2 { name="winch"; version="0.0.7"; sha256="0h9xf4qpc1xk04q92dn4n1pjvlwz2sxg0rcv6nkwyp9qj67m6h88"; depends=[procmaps]; }; - windAC = derive2 { name="windAC"; version="1.2.6"; sha256="0yx0jiz3c4slv366sic01k8l460idh4n6a797biy7wyrp6jj241x"; depends=[mvtnorm sf]; }; windex = derive2 { name="windex"; version="2.0.3"; sha256="063lhxpa8gwkaxa5p61dac239s6b11mv53d8dcah5h1q04inshm0"; depends=[ape geiger phangorn scatterplot3d]; }; windsoraiR = derive2 { name="windsoraiR"; version="0.1.2"; sha256="1smd3zw5ra1fba6mds3diadcmbw59jlvmrvfzzi4fss91wv50jql"; depends=[jsonlite]; }; winfapReader = derive2 { name="winfapReader"; version="0.1-3"; sha256="1g5z9kg5ws9cdixky2y0c7dw3f7lmh3ykjxrh3jjmkm75gzgs7p0"; depends=[lubridate]; }; wingui = derive2 { name="wingui"; version="0.2"; sha256="0yf6k33qpcjzyb7ckwsxpdw3pcsja2wsf08vaca7qw27yxrbmaa3"; depends=[Rcpp]; }; wiqid = derive2 { name="wiqid"; version="0.3.0"; sha256="0jqnlyw5iljpm7135fgnkwjvxmbjbqiqq6lchwnjmhbb5xd3kbvr"; depends=[coda HDInterval MASS mcmcOutput plotrix truncnorm]; }; wiseR = derive2 { name="wiseR"; version="1.0.1"; sha256="187ylwhk06957x9zm5r0m6w9wg08im83myz3s4gr927ig8yv3b5f"; depends=[arules bnlearn DescTools dplyr DT graph HydeNet igraph linkcomm missRanger psych RBGL Rgraphviz rhandsontable rintrojs shiny shinyalert shinyBS shinycssloaders shinydashboard shinyWidgets visNetwork]; }; - withr = derive2 { name="withr"; version="2.4.3"; sha256="0k4x2bd9wb24n3dyg7rdjicdjs5ay2kk5lfgkrcjsv6cki2wgnlv"; depends=[]; }; + withr = derive2 { name="withr"; version="2.5.0"; sha256="1h4bzj0am9lawbh1cam1jmgk1xjmn9da14r90w3q984hswz7nc9p"; depends=[]; }; wk = derive2 { name="wk"; version="0.6.0"; sha256="1xga4rrqsr190g55by39az4nimnn06bf5b6mcjgwqvba0lvjhb5g"; depends=[]; }; wkNNMI = derive2 { name="wkNNMI"; version="1.0.0"; sha256="0qpl1b2134kz9mjl38w93lp3g6kpv9ygv9hygpssm845k02hkw7c"; depends=[foreach infotheo]; }; wkb = derive2 { name="wkb"; version="0.4-0"; sha256="0mah538345npkb06bcj18mb6qnnx8nn7bdqmvqqpbawallh546a9"; depends=[sp]; }; @@ -18674,17 +18761,18 @@ in with self; { wordler = derive2 { name="wordler"; version="0.3.1"; sha256="0pvnijh2gvwjbd86ivky0zbi8y1x40xazsv2bdy5s2rfsscf4l88"; depends=[crayon]; }; wordmatch = derive2 { name="wordmatch"; version="1.0"; sha256="0zscp361qf79y1zsliga18hc7wj36cnydshrqb9pv67b65njrznz"; depends=[plyr reshape2]; }; wordnet = derive2 { name="wordnet"; version="0.1-15"; sha256="158c5fps4kvfd9mj1im8jb9rv7ipfshyagrv0q3b55ywnkrkvjqb"; depends=[rJava]; }; - wordpiece = derive2 { name="wordpiece"; version="2.0.1"; sha256="1szyj6yck4xvv41vw6l0bw31jxgxn4qg700cvx1bn40xlg2z05as"; depends=[dlr piecemaker purrr rlang stringi wordpiece_data]; }; - wordpiece_data = derive2 { name="wordpiece.data"; version="1.0.2"; sha256="11nd5zxksyxb26gpp85vfmxgwigskvablgvyd5r914nil9lvi7ca"; depends=[]; }; + wordpiece = derive2 { name="wordpiece"; version="2.1.3"; sha256="1xg9xsaqpz5l2f2vk1qnc7cwplnwvv6jl9wbdg0f92klhk1nanyp"; depends=[dlr fastmatch memoise piecemaker rlang stringi wordpiece_data]; }; + wordpiece_data = derive2 { name="wordpiece.data"; version="2.0.0"; sha256="0x5m8vkszxpz8mf9pblzm39wpaa247336zkja560zsqgzdvcj3hx"; depends=[]; }; wordpredictor = derive2 { name="wordpredictor"; version="0.0.3"; sha256="0079nkjimzz07yzqx8ksgk7isi0b5j1nxmisicbc8qvsamirm68v"; depends=[digest dplyr ggplot2 patchwork SnowballC stringr]; }; words = derive2 { name="words"; version="1.0.1"; sha256="1kd9f5470c7bdayb324m4m72v7s2kknr68qbggl5m0ww29gxs9wd"; depends=[]; }; wordsalad = derive2 { name="wordsalad"; version="0.2.0"; sha256="18kgwq6f9ymm1bmbvpmxq9gz5fx0qj64439scr21kk1cvsfl4y88"; depends=[fastTextR text2vec tibble word2vec]; }; - wordspace = derive2 { name="wordspace"; version="0.2-6"; sha256="11y57mzd12klwd2xzr38nvlrxg9jsi33mxd8nnvc96hgrjsgwakl"; depends=[cluster iotools MASS Matrix Rcpp sparsesvd]; }; + wordspace = derive2 { name="wordspace"; version="0.2-7"; sha256="0hrjv5mag7gwl4wj7np248sdyns5i623wl37b11hlgalhbmlypyf"; depends=[cluster iotools MASS Matrix Rcpp sparsesvd]; }; + workboots = derive2 { name="workboots"; version="0.1.0"; sha256="17j4vz58i645br6pb8b75kk9jib44vs2zjgfc3slj3g39my7n01b"; depends=[assertthat dplyr generics purrr rlang rsample tibble tidyr vip workflows]; }; workflowr = derive2 { name="workflowr"; version="1.7.0"; sha256="0j1ahxm7xjla1xa38dc8ykn1j5a4yw1p8ivjk3k3va25kam25cp3"; depends=[callr fs getPass git2r glue httpuv httr knitr rmarkdown rprojroot rstudioapi stringr whisker xfun yaml]; }; workflows = derive2 { name="workflows"; version="0.2.4"; sha256="1sxrgza922p137z41jcj2iwk19lxzwh6kp4kz7h9kw0b8rvfqwab"; depends=[cli ellipsis generics glue hardhat lifecycle parsnip rlang tidyselect vctrs]; }; workflowsets = derive2 { name="workflowsets"; version="0.1.0"; sha256="0596hb17mshpag3vjy2wl6fi2mdw54i9gc5za10vzy8vpkigb9jy"; depends=[cli dplyr generics ggplot2 hardhat lifecycle prettyunits purrr rlang rsample tibble tidyr tune vctrs withr workflows]; }; workloopR = derive2 { name="workloopR"; version="1.1.4"; sha256="1gynlvmqxyibql5j3db9dwvc0jsc9jqzpy3d3gp43d5lcl11mcmq"; depends=[pracma signal]; }; - worldfootballR = derive2 { name="worldfootballR"; version="0.4.9"; sha256="03jfjajyw0652dszway05f727i6viys7bhjpv0xk0a0sa497zz05"; depends=[dplyr glue janitor jsonlite lubridate magrittr progress purrr qdapRegex readr rlang rvest stringi stringr tidyr withr xml2]; }; + worldfootballR = derive2 { name="worldfootballR"; version="0.4.10"; sha256="01fdrz94wys8kkpz6sdrj3iwi00jqkmycb7f6zcg6k1hhyizfqx6"; depends=[dplyr glue janitor jsonlite lubridate magrittr progress purrr qdapRegex readr rlang rvest stringi stringr tidyr withr xml2]; }; worldmet = derive2 { name="worldmet"; version="0.9.5"; sha256="03dc93b6akah0pf36h0327jb65slsb3bypyv57cnkyxwyvni6w4s"; depends=[doParallel dplyr foreach leaflet openair purrr readr tidyr]; }; worms = derive2 { name="worms"; version="0.2.2"; sha256="183chjdi5qvsmdznvc9igcxaz769a37rwh5nzgvf5zf012a85wir"; depends=[httr plyr]; }; worrms = derive2 { name="worrms"; version="0.4.2"; sha256="1gpbyplfpcrapmci8axarrjjijsgh2dmhnsn79g1lhrafvm2ichs"; depends=[crul data_table jsonlite tibble]; }; @@ -18702,7 +18790,7 @@ in with self; { wqs = derive2 { name="wqs"; version="0.0.1"; sha256="14qaa9g9v4nqrv897laflib3wwhflyfaf9wpllmbi5xfv9223rcg"; depends=[glm2 Rsolnp]; }; wrGraph = derive2 { name="wrGraph"; version="1.3.0"; sha256="1zw9c3dl5lwksggvxsch1a9brzy7a5m6yi513h4fxf31njpc5s7g"; depends=[lattice RColorBrewer wrMisc]; }; wrMisc = derive2 { name="wrMisc"; version="1.8.1"; sha256="0bhdrjq2b26jvzgg5fchp1mvlr7rvqyx1imdgz25k853hk915cl2"; depends=[MASS]; }; - wrProteo = derive2 { name="wrProteo"; version="1.5.0"; sha256="1zn847d28cx93d80c4hv9pfxxjzf1l4v5sl17wikhi84nk7j5aig"; depends=[knitr limma wrMisc]; }; + wrProteo = derive2 { name="wrProteo"; version="1.6.0"; sha256="0iq75zdip51aw8y37ckah1mddm69cp0lds2cj0xaavrdbaarww49"; depends=[knitr limma wrMisc]; }; wrTopDownFrag = derive2 { name="wrTopDownFrag"; version="1.0.2"; sha256="1rdg6rzjz2h514i3c8z89mvj2j3h1s7rr5fry2mq3xvrwrgd3738"; depends=[wrMisc wrProteo]; }; wrangle = derive2 { name="wrangle"; version="0.5.7"; sha256="0gap15hinsgfjrxajr9kvs0rp76gl5kk2dqs92s9mfyh10kxxqpa"; depends=[dplyr magrittr rlang tidyr]; }; wrappedtools = derive2 { name="wrappedtools"; version="0.7.9"; sha256="00qp61syakz3wx491ygi2yhlj9b868vjkp8f3d02z8pgljvan93r"; depends=[boot coin dplyr forcats ggplot2 glue kableExtra knitr magrittr purrr rlang stringr tibble tidyr tidyverse]; }; @@ -18735,16 +18823,15 @@ in with self; { xROI = derive2 { name="xROI"; version="0.9.20"; sha256="0xa12qsw5xbbfqyv60apr4f9gx7q6rad4ywayvw8l2zla2wnhq5h"; depends=[colourpicker data_table jpeg lubridate moments raster RCurl rgdal rjson shiny shinyjs sp stringr tiff]; }; xSub = derive2 { name="xSub"; version="3.0.1"; sha256="0c3jc801pn85wm17jj911spryg6p3gq19im1506zkv8lqwsy1nab"; depends=[countrycode haven RCurl]; }; xVA = derive2 { name="xVA"; version="0.8.5"; sha256="1scn7acp69k80q9ksygj7ns9937yim8iwhpi54ygm28h20jnfllr"; depends=[SACCR Trading]; }; - xaringan = derive2 { name="xaringan"; version="0.22"; sha256="0qk8cp52g18l1pp7i5lhqbklafd20b51fhv7qil2dd397wjqcghk"; depends=[htmltools knitr rmarkdown servr xfun]; }; + xaringan = derive2 { name="xaringan"; version="0.23"; sha256="010k6xhblyanjf0hr4k24m26sb547jizng0nidrb2d4q1m9v1wdm"; depends=[htmltools knitr rmarkdown servr xfun]; }; xaringanthemer = derive2 { name="xaringanthemer"; version="0.4.1"; sha256="05gkk9ll5whfvhbd8x3p180qzqcz6krz2s26lfbrp2y7srpx9jr4"; depends=[colorspace glue purrr whisker]; }; xbreed = derive2 { name="xbreed"; version="1.0.1.1"; sha256="032i04ginyf9dyabfkygnhrkq7lqdvvyw7s41vjimy2kvjrnkkkx"; depends=[BGLR]; }; xdcclarge = derive2 { name="xdcclarge"; version="0.1.0"; sha256="1j8wsidwmfjygqlwavxinv4bqc6rddy42jdmlknsjfrrs49yj8kn"; depends=[nlshrink Rcpp RcppArmadillo]; }; xergm_common = derive2 { name="xergm.common"; version="1.7.8"; sha256="03mjpafwfkmyj5ba84jydap9rp0i602izjlbd511xbxcw6dx2k0b"; depends=[ergm network]; }; xesreadR = derive2 { name="xesreadR"; version="0.2.3"; sha256="1pvdx0mxg2f885bhy4hb3kqzcgva4q7hzzaipkfzyi5lnjdsbc81"; depends=[bupaR data_table dplyr lubridate purrr stringr tidyr XML xml2]; }; - xfun = derive2 { name="xfun"; version="0.29"; sha256="1x2f49n3ak85nab937wq6q5sqi1mdlfzwbv8603kxl2k8rxvp1dz"; depends=[]; }; + xfun = derive2 { name="xfun"; version="0.30"; sha256="1vn0cbskyrk8ww9yx75jni9s684yv4cvbj643lvg0lg00briry7b"; depends=[]; }; xgb2sql = derive2 { name="xgb2sql"; version="0.1.2"; sha256="1gw5dw0ck5hip8mv347zaswrggk395bg2hgn02bvqs0d31jhmgvi"; depends=[data_table xgboost]; }; - xgboost = derive2 { name="xgboost"; version="1.5.0.2"; sha256="04xbgrrb3aq067hrivslq5f2rd1v95yfv7lkj596ijyqi6ibjl27"; depends=[data_table jsonlite Matrix]; }; - xgobi = derive2 { name="xgobi"; version="1.2-15"; sha256="03ym5mm16rb1bdwrymr393r3xgprp0ign45ryym3g0x2zi8dy557"; depends=[]; }; + xgboost = derive2 { name="xgboost"; version="1.5.2.1"; sha256="13mi3rmpxhgm4qbm4xcqml9n5d1xyai2k1mi52i8x60jd5m8s319"; depends=[data_table jsonlite Matrix]; }; xgxr = derive2 { name="xgxr"; version="1.1.1"; sha256="00fd9n2qivfxg2b7vynssc82afa7nskg4akk6cgxnyhcai5jbmra"; depends=[assertthat binom Deriv DescTools dplyr ggplot2 glue gtable Hmisc labeling magrittr minpack_lm pander png RCurl readr scales stringr tibble]; }; xkcd = derive2 { name="xkcd"; version="0.0.6"; sha256="1z2y0ihn68ppay7xkglhw7djki5654g6z4bbpyy41if57z9q554f"; depends=[extrafont ggplot2 Hmisc]; }; xkcdcolors = derive2 { name="xkcdcolors"; version="1.0"; sha256="07fnjv01r3b951dqca2zs9b9f6hsgbpbpsrggvb8rps53kpid0i7"; depends=[FNN]; }; @@ -18755,7 +18842,7 @@ in with self; { xlutils3 = derive2 { name="xlutils3"; version="0.1.0"; sha256="1cxishi62bd36zlsy5qhzix1p68akdf9kpjg9gfm9aqpcijzccb9"; depends=[magrittr readxl]; }; xmeta = derive2 { name="xmeta"; version="1.3-0"; sha256="1yyqxrdfn23sqfa9765vj5fcwz2v46jvaa9wjkv1w4mvb2k2si4k"; depends=[aod glmmML MASS metafor mvmeta numDeriv plotrix]; }; xml2 = derive2 { name="xml2"; version="1.3.3"; sha256="138w7hb487al9cbahmnk5rhi23k8a9g7nk7s5dyxd3k1646rqknb"; depends=[]; }; - xml2relational = derive2 { name="xml2relational"; version="0.1.0"; sha256="03blvks4z7n4wxz5zbrn6c3a3l4hy9clcjpb834pc07ssz3c2v3g"; depends=[fs lubridate rlang stringr tidyr xml2]; }; + xml2relational = derive2 { name="xml2relational"; version="0.1.1"; sha256="05nykrmwqa43f9h6wpk6m1spmqr22r0ffiki4hp3jsyw8k7i78hv"; depends=[fs lubridate rlang stringr tidyr xml2]; }; xmlconvert = derive2 { name="xmlconvert"; version="0.1.2"; sha256="0vj5ar61i94if141jzqk7jq091mb2xwzl0x86dj7ddk8y3c1w9dv"; depends=[httr lubridate readr stringr tibble xml2]; }; xmlparsedata = derive2 { name="xmlparsedata"; version="1.0.5"; sha256="1c6bnz3ng1qw7sfip8wq3a4dn36a4d6rbja0sadn0a4pbsmk8q3n"; depends=[]; }; xmlr = derive2 { name="xmlr"; version="0.1.2"; sha256="00mxdb4899sx5py0ngzh3dvhz1sqsar2hmsrkm4jf0b3q9psc86w"; depends=[]; }; @@ -18790,11 +18877,11 @@ in with self; { xyz = derive2 { name="xyz"; version="0.2"; sha256="13w4sb4pvgciwr8wsz785dafj2k2kpx7znz46r5d32wx88vkycp4"; depends=[Rcpp]; }; yaConsensus = derive2 { name="yaConsensus"; version="1.0"; sha256="1srph1yc8lr00yvx6sjm0br9h2cq94xqb9yjxfb0bqvvmskp6s2s"; depends=[doParallel foreach pheatmap]; }; yaImpute = derive2 { name="yaImpute"; version="1.0-32"; sha256="1zvkrmlj48ahg9jq0fkbn7j603fmmld57yc0gjfas2mqa7cfbvh8"; depends=[]; }; - yacca = derive2 { name="yacca"; version="1.1.1"; sha256="1hxgkyxipk27p74vdkiy8a3wjymhcsc6ad3y9mf15qsl2xim6wwl"; depends=[]; }; + yacca = derive2 { name="yacca"; version="1.4-2"; sha256="197iv7qcbp9xx8kmpwb98acpkgzn9m7sncn6qi7k0chjx78095ws"; depends=[]; }; yager = derive2 { name="yager"; version="0.1.1"; sha256="178ypdr3f0w9rb4ci8q2hshr62b7993m8q6zxc4pf0msq175n1ml"; depends=[lhs MLmetrics randtoolbox]; }; yakmoR = derive2 { name="yakmoR"; version="0.1.1"; sha256="09aklz79s0911p2wnpd7gc6vrbr9lmiskhkahsc63pdigggmq9f7"; depends=[BBmisc checkmate Rcpp]; }; - yaml = derive2 { name="yaml"; version="2.2.2"; sha256="0c7pk5fq79mkqpc398hg8zj01frv4araglyppli49sqr4yx6mp55"; depends=[]; }; - yamlet = derive2 { name="yamlet"; version="0.8.1"; sha256="142d0wiymk9mncfsg77jwgmvbcwiiw1h1gfx9gmpgpdjcdbbcf2z"; depends=[csv dplyr encode ggplot2 rlang spork tidyr units xtable yaml]; }; + yaml = derive2 { name="yaml"; version="2.3.5"; sha256="0h2ixd95ww12ir13fdzbvjq4lsz6l8hmgv4bbsi89qd0ah2nrpry"; depends=[]; }; + yamlet = derive2 { name="yamlet"; version="0.8.5"; sha256="0yhfyqkbj147sjrm4sc9va1c59ayzh2wxwasaz8vr2ri9qmmk91i"; depends=[csv dplyr encode ggplot2 rlang spork tidyr units xtable yaml]; }; yamlme = derive2 { name="yamlme"; version="0.1.1"; sha256="1cknx8ndcb9rz1j7z27244vba8hxyh5sa9zwsv6rwk9g1c52vmyg"; depends=[]; }; yap = derive2 { name="yap"; version="0.1.1"; sha256="0m126vpfvlmwkpy14i9wbzr51hb8r6s3wcdm3vp9izfccpnxfxl2"; depends=[lhs randtoolbox]; }; yaps = derive2 { name="yaps"; version="1.2.5"; sha256="0309vc67v5kfbdcah5gnvdqwdxir4k1ik47dw6msw2hvg6lpqvqf"; depends=[circular cowplot data_table ggplot2 ggrepel nloptr plyr Rcpp RcppEigen reshape2 splusTimeSeries tictoc TMB viridis zoo]; }; @@ -18813,6 +18900,7 @@ in with self; { ymlthis = derive2 { name="ymlthis"; version="0.1.5"; sha256="02flsiqzpasyvskzlygllmrc1vbd4cv6yx4cdfiqrcq1806kdrf2"; depends=[crayon fs glue magrittr miniUI purrr rlang rmarkdown rstudioapi shiny shinyBS stringr usethis whoami withr yaml]; }; yonder = derive2 { name="yonder"; version="0.2.0"; sha256="1ilzn17w6skd0dhwxyrgnfzyazafp8hsi8q6pfxz6k16cd668mc0"; depends=[htmltools magrittr shiny]; }; yorkr = derive2 { name="yorkr"; version="0.0.31"; sha256="0fsj7j3qlf9q708hd9fq2yqsxsyaxr8gd93crq48nnirw3q9nshn"; depends=[dplyr ggplot2 gridExtra reshape2 rpart_plot yaml]; }; + youngSwimmers = derive2 { name="youngSwimmers"; version="0.0.1"; sha256="02ih66ad8v5qkgyszllkh9319sfd6fqcci4zrvbjr1dfwlwa2ri1"; depends=[data_table lifecycle]; }; youtubecaption = derive2 { name="youtubecaption"; version="1.0.0"; sha256="15cafl7b03xrql2y2ayy6ajf6v764wym3xqs4pbzlf6ncy8qwl5r"; depends=[dplyr magrittr purrr reticulate stringr tibble writexl]; }; yowie = derive2 { name="yowie"; version="0.1.0"; sha256="1sm3dg4sirvlb17ciwldvnc1zzfgwxm38x1k2n99nwa6sygn1nrw"; depends=[tsibble]; }; ypr = derive2 { name="ypr"; version="0.5.2"; sha256="1bbcwy4hngai6cajgcir1g6hdjh9xdpfcxqzm8ba8ikyjfzwn9bw"; depends=[chk ggplot2 lifecycle purrr scales yesno]; }; @@ -18823,7 +18911,6 @@ in with self; { yum = derive2 { name="yum"; version="0.1.0"; sha256="1k9q34n1pzv4c7hp7cd4yhm8v1qv41an8vfh65n4byvyzipxp85y"; depends=[yaml]; }; yummlyr = derive2 { name="yummlyr"; version="0.1.1"; sha256="0xrk6g58laksz92d8mxck923sk4j92g55szrkxk123wjp5kg9vx6"; depends=[httr jsonlite]; }; zCompositions = derive2 { name="zCompositions"; version="1.4.0"; sha256="032kgr5k36d0ffmdg984xx6pl4sq3m9gsiz96qc8p631m05ps3d0"; depends=[MASS NADA truncnorm]; }; - zGPS_AO = derive2 { name="zGPS.AO"; version="0.1.0"; sha256="18dqssnj4gch1yg0qvrj4j2ry95sy6a9z8yz2zi8nzhhsj8dz1qq"; depends=[doParallel doRNG dplyr foreach ggplot2 hrbrthemes MASS plotly pscl questionr viridis]; }; zTree = derive2 { name="zTree"; version="1.0.7"; sha256="005zk6wpchpss6865ki35yawgf668pn70163ah97rnfkhfaswm6y"; depends=[plyr]; }; zalpha = derive2 { name="zalpha"; version="0.3.0"; sha256="04hi5lxgcqzmkbqppp5fv8x7wdgap3bgr8b8pv4pvavzh73jlmxs"; depends=[]; }; zbank = derive2 { name="zbank"; version="0.1.0"; sha256="0vzvlri3sncvbz2cdg8wzlpskm1lq9ji0jrfy5cx4ib19m6gxhpc"; depends=[crul jsonlite tibble]; }; @@ -18832,7 +18919,7 @@ in with self; { zeallot = derive2 { name="zeallot"; version="0.1.0"; sha256="1sd1igcfnv27pa3bqxlbyxchi562h7grnjg1l7wxx3bwr49i57s3"; depends=[]; }; zebu = derive2 { name="zebu"; version="0.1.3.0"; sha256="1rlcrvhic110h8r0mqwhkzq8w566jfymxpcwv63bvs7fd8j98vsv"; depends=[foreach ggplot2 iterators plyr reshape2]; }; zeitgebr = derive2 { name="zeitgebr"; version="0.3.5"; sha256="1h2zx3ah1xdyyag40ragrv7gvpnlzqmappbnjp971dn9khqdxfqs"; depends=[behavr data_table lomb pracma WaveletComp]; }; - zen4R = derive2 { name="zen4R"; version="0.5-2"; sha256="0r9xzi8k4s03hdjg3vs67lbhbslsw3l5q2zplpiv8yw8hngh9dhx"; depends=[httr jsonlite keyring R6 xml2]; }; + zen4R = derive2 { name="zen4R"; version="0.5-3"; sha256="1kw3gx1d1azhxg8rkqib8xvhqfwbxwr6r8gfjw0l9y1c69b6gbni"; depends=[httr jsonlite keyring R6 xml2]; }; zendeskR = derive2 { name="zendeskR"; version="0.4"; sha256="06cjwk08w3x6dx717123psinid5bx6c563jnfn890373jw6xnfrk"; depends=[RCurl rjson]; }; zenplots = derive2 { name="zenplots"; version="1.0.4"; sha256="1r105ay0p00wfly8z54dg18i1fq7ppvxzri49i7zrlimqawzv19s"; depends=[graph loon MASS PairViz]; }; zeroEQpart = derive2 { name="zeroEQpart"; version="0.1.0"; sha256="1n24nqyl0irpyspwx4b73xy228a84aa8zsn9fcf2lrlni5vyzmm0"; depends=[MASS ppcor]; }; @@ -18852,7 +18939,7 @@ in with self; { zmisc = derive2 { name="zmisc"; version="0.2.1"; sha256="10cb1zmzasqxr5sdkqn4hylp7qaxzgdf9gzp0dc97yhgcf5p0i5n"; depends=[]; }; zoeppritz = derive2 { name="zoeppritz"; version="1.0-8"; sha256="1711szx9zz17q6pfinyzlyrw7m9772c8ywlixqar2l165bkjalgm"; depends=[]; }; zoib = derive2 { name="zoib"; version="1.5.5"; sha256="0inm7f2pc68ksqxvq12xp9jc99vj7ydylvs24ip12nksbj5k1n8f"; depends=[abind coda Formula rjags]; }; - zoid = derive2 { name="zoid"; version="1.0.0"; sha256="12gvb80ybnhc3yij1kgffhx2xygamjr4yli405dyndh0n5q6kxvy"; depends=[BH compositions gtools Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; + zoid = derive2 { name="zoid"; version="1.1.0"; sha256="0x37250fq3a3jbl1a2p8zkbacwzhc1xylk1nnfmx2fcgjif40lmq"; depends=[BH compositions gtools Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; }; zoltr = derive2 { name="zoltr"; version="0.5.1"; sha256="12zh7y3pwidclscgvd0b0iaqq9j5y8mc8xd6pz4vs0jy5qs3ahar"; depends=[base64url dplyr httr jsonlite magrittr MMWRweek mockery readr rlang webmockr]; }; zonator = derive2 { name="zonator"; version="0.6.0"; sha256="1plxchpd4ypp36phl13pi9yvlrqi3lk83lv5rldrhdqynhcgfw2k"; depends=[ggplot2 raster RColorBrewer reshape2 rgdal]; }; zonebuilder = derive2 { name="zonebuilder"; version="0.0.2"; sha256="0mxf3dz0d6bi5wwjilqivdxhy5ypnq5svky8zygha0clv45l4dmn"; depends=[RColorBrewer sf]; }; @@ -18871,122 +18958,193 @@ in with self; { zzlite = derive2 { name="zzlite"; version="0.1.2"; sha256="0vi1slx2s4r5zf82lazqv0c3m12xq73wlgsbz6af4y00h0bkr3ps"; depends=[httr jsonlite]; }; ACSNMineR = derive2 { name="ACSNMineR"; version="0.16.8.25"; sha256="0gh604s8qall6zfjlwcg2ilxjvz08dplf9k5g47idhv43scm748l"; depends=[ggplot2 gridExtra scales]; broken = true; }; AMORE = derive2 { name="AMORE"; version="0.2-16"; sha256="0vw6hhykg1r6xxja6d4zb2y00x7pfkmhcq9xkidz8p4arinb7xnl"; depends=[]; broken = true; }; + AWAPer = derive2 { name="AWAPer"; version="0.1.46"; sha256="02n662wvd8qwshfmj9qfff730qs6ls82hkdsphw05jj6llddi4k5"; depends=[chron Evapotranspiration maptools ncdf4 raster sp xts zoo]; broken = true; }; AlphaVantageClient = derive2 { name="AlphaVantageClient"; version="0.0.1"; sha256="095m850v945lw7i3qd812p28srdb5hdk9h52zf6bkr166zai1ni0"; depends=[httr xts]; broken = true; }; + AnDE = derive2 { name="AnDE"; version="1.0"; sha256="1yil8ab50wvlqmdla9kmfba8vfgy5r694r6igb58s6vnmld78yf2"; depends=[discretization foreign functional stringr]; broken = true; }; AnimalAPD = derive2 { name="AnimalAPD"; version="1.0.0"; sha256="1csa6disrg11hpxg4zw0jay15srw9lsgbhl1xgl7hpdr3nqsv3s7"; depends=[activityGCMM brms circular ggplot2 gridExtra loo overlap]; broken = true; }; + AnnotLists = derive2 { name="AnnotLists"; version="1.2"; sha256="1g2khb2ggniwg2zcjamsm3bxyrl2zabvk540b5vyy9am9k83m1g9"; depends=[]; broken = true; }; BALD = derive2 { name="BALD"; version="1.0.0-3"; sha256="1azyqami07g3ax60j0ws3d1qha65k0svn2v5c9pisni0qch5xql0"; depends=[lattice logspline rjags]; broken = true; }; BCA = derive2 { name="BCA"; version="0.9-3"; sha256="0ksd6b0ykydgdn33x29bwwqkrp23cvdj3imps0l6qs1p4465j5nf"; depends=[car clv flexclust Rcmdr RcmdrMisc rpart]; broken = true; }; - BIEN = derive2 { name="BIEN"; version="1.2.4"; sha256="1dagrs54ciagm2mgqrvxl6k2akahr0qk63ifxqnks7iljm0x1gw6"; depends=[ape DBI doParallel fasterize foreach raster rgdal rgeos RPostgreSQL sf sp]; broken = true; }; + BCT = derive2 { name="BCT"; version="1.1"; sha256="058iir5mhgc7zy1nha8g6299ya9jvg1skxj3flgn3b97snjx5qky"; depends=[igraph Rcpp stringr]; broken = true; }; BIS = derive2 { name="BIS"; version="0.2.1"; sha256="0mngmchgc46wc9a7ksyqrvj6k46nm4ih7x69k3xijfia9bgkym0v"; depends=[dplyr readr rvest tidyr xml2]; broken = true; }; BNN = derive2 { name="BNN"; version="1.0.2"; sha256="13h9xqfdqnc9d8brx1xlmvb4nrkpwncwjz98y7i3wijih85wkikd"; depends=[mvtnorm]; broken = true; }; + BayesValidate = derive2 { name="BayesValidate"; version="0.0"; sha256="1gli65avpkb90asx92l1yjbwaxcsyb920idyjwgd2sl2b3l657ly"; depends=[]; broken = true; }; BigDataStatMeth = derive2 { name="BigDataStatMeth"; version="0.99.14"; sha256="05mmi12wn0xis4vwjn9zi3gcpxm9jmp7kpfazxsasbwgvrdd9k3q"; depends=[beachmat BH data_table Rcpp RcppEigen RcppParallel RCurl rhdf5 Rhdf5lib RSpectra]; broken = true; }; BigTSP = derive2 { name="BigTSP"; version="1.0"; sha256="1jdpa8rcnrhzn0hilb422pdxprdljrzpgr4f26668c1vv0kd6k4v"; depends=[gbm glmnet randomForest tree]; broken = true; }; BioMedR = derive2 { name="BioMedR"; version="1.2.1"; sha256="0l3nmnqv0gzkbby4fhajbba910zpnbyckvxwds353pn54g9pcry7"; depends=[Biostrings ChemmineR fmcsR GOSemSim MASS org_Hs_eg_db pls randomForest rcdk RCurl rjson]; broken = true; }; + BoutrosLab_plotting_general = derive2 { name="BoutrosLab.plotting.general"; version="6.0.3"; sha256="0sirpdp7k28wwn5k5wyc0ib6abb5b1qpjrrk3m168x5yg1s2hqkf"; depends=[cluster e1071 gridExtra gtable hexbin lattice latticeExtra MASS]; broken = true; }; CCpop = derive2 { name="CCpop"; version="1.0"; sha256="10kgw3b98r0kn74w89znq6skgk8b3ldil6yb0hn5rlcf6lazjzca"; depends=[nloptr]; broken = true; }; + CDSeq = derive2 { name="CDSeq"; version="1.0.8"; sha256="06pjp9hn9ziz4wgkaj0r0zzw69r7635j10rmnl331abc4mchpazy"; depends=[Biobase clue dirmult doParallel dplyr foreach ggplot2 ggpubr gplots iterators magrittr MASS Matrix matrixStats qlcMatrix Rcpp RcppArmadillo RcppThread rlang Seurat]; broken = true; }; + CLSOCP = derive2 { name="CLSOCP"; version="1.0"; sha256="0rkwq9rl2ph4h5zwb2i3yphjyzxmh6b6k23a8gcczycx6xdq4yhw"; depends=[Matrix]; broken = true; }; + ChoiceModelR = derive2 { name="ChoiceModelR"; version="1.2"; sha256="0dkp3354gvrn44010s8fjbmkpgn1hpl4xbfs5xslql8sk8rw0n2c"; depends=[]; broken = true; }; ClimDown = derive2 { name="ClimDown"; version="1.0.8"; sha256="0qcag9jwvhi9yss55wy5jxabrvym9hljn1fs5gfkzjs5hiwv3gxv"; depends=[abind fields foreach ncdf4 PCICt seas udunits2]; broken = true; }; - ClimMobTools = derive2 { name="ClimMobTools"; version="0.4.2"; sha256="0y0x5h281xr7bcwqzl19x5azysnf8f2bwqcncm2bnka1wvlckjby"; depends=[climatrends httr jsonlite Matrix PlackettLuce RSpectra sf]; broken = true; }; ConfoundedMeta = derive2 { name="ConfoundedMeta"; version="1.3.0"; sha256="17l6dfff2v0a4p022qclrmkzi78ga9adkgxgrgk9imz0n9m9424d"; depends=[ggplot2 metafor]; broken = true; }; + CreditMetrics = derive2 { name="CreditMetrics"; version="0.0-2"; sha256="16g3xw8r6axqwqv2f0bbqmwicgyx7nwzff59dz967iqna1wh3spi"; depends=[]; broken = true; }; CytobankAPIstats = derive2 { name="CytobankAPIstats"; version="2.0"; sha256="0xczcgaxd8dv6fd1j5c8y4il852lq8859d1y16sxs8a3gqn9fbz2"; depends=[CytobankAPI pheatmap shiny shinyFiles xlsx]; broken = true; }; - DArand = derive2 { name="DArand"; version="0.0.1.1"; sha256="0cmwqbhi073zj8ipgib6a6ss6h4r0x2w541xl24jyk5xz3c6s697"; depends=[]; broken = true; }; - DNH4 = derive2 { name="DNH4"; version="0.1.11"; sha256="15a1hq8f8nz200apbm28dwyphl18rhicmf7irsdj0z1n1j898c44"; depends=[httr rvest tibble tidyr xml2]; broken = true; }; + DStree = derive2 { name="DStree"; version="1.0"; sha256="14wba25ylmsyrndh007kl377dv4r34wr1555yxl6kyxrs4yg3jir"; depends=[Ecdat pec Rcpp rpart rpart_plot survival]; broken = true; }; DataEntry = derive2 { name="DataEntry"; version="0.9-3"; sha256="0gfsg7wfwy88x7y1dwpgwi6fkizjnhrzj0a5ij70y4a4sjmyiy55"; depends=[digest gWidgets2 gWidgets2RGtk2 RGtk2]; broken = true; }; + DeducerSpatial = derive2 { name="DeducerSpatial"; version="0.7"; sha256="0133qk3yjcifyha7c4pqr5s0hmbci72bzgil2r0sxjmrljs3q727"; depends=[Deducer Hmisc JavaGD maptools OpenStreetMap rgdal scales sp UScensus2010]; broken = true; }; DengueRT = derive2 { name="DengueRT"; version="1.0.1"; sha256="11qfg4l6y3j8qh4dcsz13xjjj1n0q71c9a3c180nm5lgqv0nwb81"; depends=[drc ggplot2 nlme]; broken = true; }; + DiPs = derive2 { name="DiPs"; version="0.6.2"; sha256="13n50wakvh7ny342xl007k1dfbwmgzg8kxvgcpfblaypqn48q09f"; depends=[liqueueR mvnfast plyr]; broken = true; }; DominoPredictionLogging = derive2 { name="DominoPredictionLogging"; version="0.1.0"; sha256="1qzh8inzqk1s6cw9bsl7hazdf6cbfr11zs22723wl4xs31inp1lg"; depends=[lgr rjson uuid]; broken = true; }; + DrInsight = derive2 { name="DrInsight"; version="0.1.2"; sha256="1zz9i4aj0ijqfgp30wv0bvrgx2n003dysqg0pm13f7hni27819ff"; depends=[igraph qusage]; broken = true; }; + EL = derive2 { name="EL"; version="1.0"; sha256="13r7vjy2608h8jph8kwy69rnkg98b2v69117nrl728r3ayc46a18"; depends=[]; broken = true; }; + EasyHTMLReport = derive2 { name="EasyHTMLReport"; version="0.1.1"; sha256="1hgg8i7py7bx48cldyc7yydf0bggmbj3fx3kwiv9jh1x5wyh929z"; depends=[base64enc ggplot2 knitr markdown reshape2 scales xtable]; broken = true; }; Eunomia = derive2 { name="Eunomia"; version="1.0.1"; sha256="06a42qsf3nx1pbynikkdvmbhh1rmgnfmiggdn86b3a0ij6cq0p2r"; depends=[DatabaseConnector RSQLite SqlRender]; broken = true; }; - FLightR = derive2 { name="FLightR"; version="0.5.1"; sha256="14188r6kk194ir0l8byaqlly4lsg8w58lw5xx2s4abyhbn35kwq8"; depends=[bit CircStats circular fields GeoLight ggmap ggplot2 ggsn maptools mgcv nlme RcppArmadillo rgdal rgeos sp truncnorm]; broken = true; }; + FAVAR = derive2 { name="FAVAR"; version="0.1.0"; sha256="04ajrq5wii4mccnaxn3wsn7kdfd2pydxaygk6dnbhc6610xs8bc5"; depends=[bvartools coda doParallel dplyr foreach ggplot2 magrittr matlab Matrix MCMCpack]; broken = true; }; + FitARMA = derive2 { name="FitARMA"; version="1.6.1"; sha256="02di0pkz6hh92glpn3li6z9azkcqa64ja8zfpy0mkh1l97mw6jsv"; depends=[FitAR]; broken = true; }; + FunCluster = derive2 { name="FunCluster"; version="1.09"; sha256="0i73asn1w4s6ydf2ddn5wpr0mwbbxzgmaly1pslarzkx71wk03fz"; depends=[cluster Hmisc]; broken = true; }; GGEBiplotGUI = derive2 { name="GGEBiplotGUI"; version="1.0-9"; sha256="0nd0ky3m1avy82z48g7hcysq0y0agxjxdn0g624dkm2w99avxw3j"; depends=[rgl tkrplot]; broken = true; }; - GGEBiplots = derive2 { name="GGEBiplots"; version="0.1.2"; sha256="0zizc8xz16hfcw7jfwn8lmv1mqnnzrj0dx1dk0ak8j7svfkskw0y"; depends=[ggforce ggplot2 scales]; broken = true; }; + GHap = derive2 { name="GHap"; version="2.0.0"; sha256="0br9civfdlksn5xmyrvz2y0knikcd2i175kddxjdqmiyyayckc8w"; depends=[class data_table e1071 lme4 Matrix]; broken = true; }; GeneBook = derive2 { name="GeneBook"; version="1.0"; sha256="1cg8zyr7rbshj3shhzkrxs910dsz4brhh51jvn2qzipzd8dbvxiv"; depends=[dplyr repmis stringr svDialogs]; broken = true; }; - GenomeAdmixR = derive2 { name="GenomeAdmixR"; version="2.1.2"; sha256="0b8h53gb1afgf159rav7412acvnb59rjad4zzba4ck8nzfrdaqwm"; depends=[ggplot2 ggridges hierfstat Rcpp RcppArmadillo RcppParallel rlang stringr tibble vcfR]; broken = true; }; GeoLight = derive2 { name="GeoLight"; version="2.0.0"; sha256="1i49hyj3f5rcw0s6j2csnfwc6mnp5zn44vxjnk05wdkpw6dpvx5i"; depends=[changepoint fields maps MASS]; broken = true; }; HRM_curve = derive2 { name="HRM.curve"; version="0.0.1"; sha256="0p3kvldpz347c0cdjkrdm0x2nfj85hm5cp59lirqhq77hf1zfnd5"; depends=[]; broken = true; }; HSAR = derive2 { name="HSAR"; version="0.5.1"; sha256="03ryscvgiiwjcqk6gy3251nqqk43x508kz3ibw35hi84m2s7fsxj"; depends=[Rcpp RcppArmadillo spatialreg spdep]; broken = true; }; HierO = derive2 { name="HierO"; version="0.2"; sha256="1lqj5grjly4kzxl7wb192aagz2kdvpnjdan2kcg5yxwvg1xcvwv1"; depends=[bitops RCurl rneos tcltk2 XML]; broken = true; }; HierPorfolios = derive2 { name="HierPorfolios"; version="0.1.0"; sha256="0lx10lnslal689ykp7idvngc074yhfx3mkddyrax91djnqsc8aq4"; depends=[cluster fastcluster RiskPortfolios]; broken = true; }; + HybridMC = derive2 { name="HybridMC"; version="0.2"; sha256="1wgzfyk0scwq9s2sdmc91fj7r4d7zlgwgnj6mdiia8w88ja8kzqy"; depends=[coda]; broken = true; }; ICSsmoothing = derive2 { name="ICSsmoothing"; version="1.2.5"; sha256="08m8p6y5zk54ha3wp5x9xbx6f2xkkqx232hsan1f1s8k9j3q5avd"; depends=[ggplot2 polynom]; broken = true; }; + IMAGE = derive2 { name="IMAGE"; version="1.0"; sha256="0xgrja7qhklcmbm0zz5xg94gw5kl05nk3v77l7vxq2d5sk0435g3"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo]; broken = true; }; IP = derive2 { name="IP"; version="0.1"; sha256="0ranpsacsl2nm8swc3saw6xh6cdsfdyq58jlpki04kk3hsqbr9p0"; depends=[stringi]; broken = true; }; + IPMRF = derive2 { name="IPMRF"; version="1.2"; sha256="1zvwwhiy0p134zvm5ldc92pdd1ap72bhbrlf02rz9m2hlsxmwy67"; depends=[gbm party randomForest]; broken = true; }; IRATER = derive2 { name="IRATER"; version="0.0.1"; sha256="0jxdvjmnmangbqy3ibb5qrj9jz3wrzs0wa1r2gjk4v8vsbk0ipcf"; depends=[coda lattice plyr R2admb]; broken = true; }; + IRSF = derive2 { name="IRSF"; version="1.0.3"; sha256="1cq196z2i4by7dfij6w849a49d8dzzcdk5a68nxvmvwq3xskywam"; depends=[abind randomForestSRC survival]; broken = true; }; ISEtools = derive2 { name="ISEtools"; version="3.1.1.1"; sha256="00d6znqz2mfmyi9ijgrg2pwl4lnvvsy00ysa7a7vjq7ip8qvcjfq"; depends=[coda Xmisc]; broken = true; }; ISR3 = derive2 { name="ISR3"; version="0.98"; sha256="0mmpdl9ndlj9i0k3zl7ja0g7y9pm67igw925ld5qnz7a36plygxs"; depends=[]; broken = true; }; IceCast = derive2 { name="IceCast"; version="2.1.0"; sha256="0h3z68lfjw5s51601m17m2gvn12vkwj5gzc70dqzfjmxdkgv3p28"; depends=[coda maptools MASS ncdf4 raster Rcpp RcppArmadillo rgeos sp]; broken = true; }; IgorR = derive2 { name="IgorR"; version="0.8.1"; sha256="1lkiz3gxj8i1xbr5jp69z21rpk7kz3a68h29inp1qa7zi7gikmgx"; depends=[bitops]; broken = true; }; Interpol_T = derive2 { name="Interpol.T"; version="2.1.1"; sha256="1fbsl1ypkc65y6c0p32gpi2a2aal8jg02mclz7ri57hf4c1k09gz"; depends=[chron date]; broken = true; }; JMcmprsk = derive2 { name="JMcmprsk"; version="0.9.10"; sha256="1hkylfrr2036vgkxfs98szm3883bmyvvyr0f3a8xygccf3pn28xc"; depends=[dplyr MASS pracma Rcpp reshape2 statmod]; broken = true; }; + KODAMA = derive2 { name="KODAMA"; version="1.8"; sha256="0i1lwjzxjpm9yng763hkbi88q13i9bhcwwin6b3lkif34r4c3n8y"; depends=[minerva Rcpp RcppArmadillo]; broken = true; }; KernelICA = derive2 { name="KernelICA"; version="0.1.0"; sha256="1yq7w24qq23c81a9y0jn36iw7zjbxsj3b3p1rq6yl0lanzda9bsr"; depends=[ICtest inline JADE ManifoldOptim Rcpp RcppArmadillo RcppEigen]; broken = true; }; + Knoema = derive2 { name="Knoema"; version="0.1.19"; sha256="16izh1viaqxvhgfxy2g6b9hhvm1n6nbjsj2xd45qwdibl3ly8d0f"; depends=[base64enc digest httr jsonlite lubridate xts zoo]; broken = true; }; KnowGRRF = derive2 { name="KnowGRRF"; version="1.0"; sha256="0nk0baibd184rsg23jx1wg4c2fcaqf8ww7822xrs3w5ym6vwd0rs"; depends=[MASS PRROC randomForest RRF]; broken = true; }; + LANDD = derive2 { name="LANDD"; version="1.1.0"; sha256="13szkww9nw8zywfrqd8mwgj9csgragm0bx8ia52rcpakpc3hv3hx"; depends=[BH doParallel fdrtool foreach GGally ggplot2 GOSemSim GOstats igraph intergraph Matrix modeest mvtnorm pROC Rcpp]; broken = true; }; LBC = derive2 { name="LBC"; version="1.0"; sha256="027q5dk771a5v7g0il7kcczfyf6cqfb4vb3y0j7gwr02bq4360wm"; depends=[]; broken = true; }; + LDOD = derive2 { name="LDOD"; version="1.0"; sha256="0mf2sy01yv57mqicrz08a17m6crigklx6fmw9zpxv7g85qw1iq4v"; depends=[Rmpfr Rsolnp]; broken = true; }; + LIHNPSD = derive2 { name="LIHNPSD"; version="0.2.1"; sha256="08ils29vvaq6abkgxbh028vwjw6l6h10cirbnwr65s458zvh4xqv"; depends=[BB Bolstad2 moments optimx Rmpfr sn]; broken = true; }; + LogitNet = derive2 { name="LogitNet"; version="0.1-1"; sha256="08xi5rpbqkc1b3qj24blv3l0r68wcqbsbjcqxiypm75f3c2irc4i"; depends=[]; broken = true; }; + MAPLES = derive2 { name="MAPLES"; version="1.0"; sha256="0hzsh7z1k7qazpxjqbm9842zgdpl51irg7yfd119a7b2sd3a8li9"; depends=[mgcv]; broken = true; }; + MAc = derive2 { name="MAc"; version="1.1.1"; sha256="1dawqmziffaz8wgcqzwc0yifdq65abgn24vafkrwa9850048c26f"; depends=[]; broken = true; }; MHTcop = derive2 { name="MHTcop"; version="0.1.1"; sha256="1mr8y8brsi37b5qx3fqm0bj90dgknzzwhxfmvyd9kxbxh19whgxq"; depends=[copula matrixStats MCMCpack mvtnorm stabledist]; broken = true; }; MLPA = derive2 { name="MLPA"; version="1.10.0"; sha256="1w8vhvs8ri8iyh068g59chz3mn0wapa4jr1wmhjlzwa2c651q2cx"; depends=[]; broken = true; }; + MLRShiny = derive2 { name="MLRShiny"; version="0.1.0"; sha256="06zcyz8l4754sjbcql3jd3nq1d2lgj92p5h2bh708z52mww71isw"; depends=[corrgram dplyr forecast psych QuantPsyc shiny shinyAce]; broken = true; }; + MLRShiny2 = derive2 { name="MLRShiny2"; version="0.1.0"; sha256="1ygamp0ldz1i0w2xyi205rpd1gd5asw61l36z06j41ghdyiz1lww"; depends=[corrgram dplyr forecast psych QuantPsyc shiny shinyAce]; broken = true; }; MRMR = derive2 { name="MRMR"; version="0.1.4"; sha256="0dgbhlynaaka7mdzl6igwgcdzvy6cm2y8mbxaf9pfla8w3z8y0lq"; depends=[ggplot2 lmtest lubridate plyr reshape2]; broken = true; }; MVT = derive2 { name="MVT"; version="0.3"; sha256="0vinlv3d5daf8q7pd9xgs51nxz2njgdba5750vygmv883srlzi9d"; depends=[]; broken = true; }; + MedOr = derive2 { name="MedOr"; version="0.1"; sha256="1rwc14s16lnzgb78ac2017hv9pss7zw7nw3y7vrvq1qx4fgiw6f8"; depends=[]; broken = true; }; MetaboLouise = derive2 { name="MetaboLouise"; version="1.0.0"; sha256="1agcp520in0wpxv3x2jvvmv61hasazdymnvjhzl66nwv8lifl98z"; depends=[igraph]; broken = true; }; + Meth27QC = derive2 { name="Meth27QC"; version="1.1"; sha256="0ad30svs2kjzmmyvcm0jmv64iyq7slp1x1xl35h2rv1b6zbd4658"; depends=[gplots]; broken = true; }; Myrrix = derive2 { name="Myrrix"; version="1.2"; sha256="05x2h4ppjhfm0wlpwyp8ycjg59qj3gv0yqdilxrzb1lkrzln92xb"; depends=[Myrrixjars rJava]; broken = true; }; Myrrixjars = derive2 { name="Myrrixjars"; version="1.0-2"; sha256="1hhfg83z5kl6l250z3lippx3qc68k1wj1qlfzd6m66rgmk699gyl"; depends=[rJava]; broken = true; }; - N2H4 = derive2 { name="N2H4"; version="0.5.9"; sha256="09ikdnn17zx9l683k6mrc4hifxnd5d7fjxm6qdvxxbn10dh6qgvj"; depends=[dplyr httr jsonlite lubridate rvest tibble tidyr xml2]; broken = true; }; - NetLogoR = derive2 { name="NetLogoR"; version="0.3.9"; sha256="035nsxgzh7dg9bjcwqbf5228ph90ff629di4ff3pdvr40jki60f1"; depends=[abind car CircStats data_table Hmisc matrixStats plyr quickPlot raster rgeos sp SpaDES_tools]; broken = true; }; + NLMR = derive2 { name="NLMR"; version="1.1"; sha256="1m08nm71wbam6d8nj8akwqrm6nq5bvm3v76kdlasdgs7v36xzri6"; depends=[checkmate dplyr fasterize igraph RandomFields raster Rcpp sf spatstat_core spatstat_geom tibble]; broken = true; }; + NPMVCP = derive2 { name="NPMVCP"; version="1.1"; sha256="13jpm46abwziq8859jhl6hg1znk3ws1q7g4vlr2jyri3qa6h22dd"; depends=[]; broken = true; }; + NetData = derive2 { name="NetData"; version="0.3"; sha256="1jf05zwy0c6gmm7kvxlwvai61bz4wpsw7cl0h4i21ipzn1rqxmqj"; depends=[]; broken = true; }; OligoSpecificitySystem = derive2 { name="OligoSpecificitySystem"; version="1.3"; sha256="17mspf1ph2ybv046zckykfdcbrsiz40hrs6ib5mpwkfnrvsp1w7l"; depends=[tkrplot]; broken = true; }; + Omisc = derive2 { name="Omisc"; version="0.1.4"; sha256="1f6aakywjabq0xds5yl70ivr1jmw26zry2m65xszfp8p5mp45c7g"; depends=[copula MASS psych]; broken = true; }; OpenMPController = derive2 { name="OpenMPController"; version="0.2-5"; sha256="00hs8v47pr2d726z8izkfrgmayw147hdm16rr9rw1zs3ad216zjj"; depends=[]; broken = true; }; OutlierDC = derive2 { name="OutlierDC"; version="0.3-0"; sha256="1vm3zx4qmj9l0ddfqbksm1qyqzzqrxf93gh4kj52h68zlsfxwv41"; depends=[Formula quantreg survival]; broken = true; }; PANDA = derive2 { name="PANDA"; version="0.9.9"; sha256="1sf3c49v4mb3mz2imqlqdbh1iab7bc2pxpi8bmgj2jld133555ip"; depends=[cluster GO_db]; broken = true; }; + PCObw = derive2 { name="PCObw"; version="0.0.0"; sha256="1mz9fpd8k0fs14gvs9bhzrpydz200fsg52njaw2nr08184q78r4y"; depends=[Rcpp RcppEigen]; broken = true; }; POPdemog = derive2 { name="POPdemog"; version="1.0.3"; sha256="0j83c853ligmw8ag4pb0vj46sfn2w2ynh4wvgkabzs688hxxni8r"; depends=[]; broken = true; }; + PROTOLIDAR = derive2 { name="PROTOLIDAR"; version="0.1"; sha256="0bz3071b0wlcvh40vl3dyiiixk5avsj6kjjnvlvx264i5g08rij4"; depends=[]; broken = true; }; + PVplr = derive2 { name="PVplr"; version="0.1.0"; sha256="1ssmdhq2qczk6n50f8jj4j3nym7jj9bshfc1f29lccvmp7wxdp9a"; depends=[broom cluster dplyr ggplot2 magrittr minpack_lm purrr rlang segmented stlplus tidyr]; broken = true; }; + ParallelTree = derive2 { name="ParallelTree"; version="0.1.3"; sha256="1h53qwhc63fglm452b3by7f3g6f3hyqwkmwmbdqdb9rv3j4gvnvg"; depends=[ggplot2]; broken = true; }; PatternClass = derive2 { name="PatternClass"; version="2.0.1"; sha256="1xwlk6shms38nqxad3d15254wgnkfzy7jyf5w9bbm96kg05mndbz"; depends=[landscapemetrics raster]; broken = true; }; Plasmode = derive2 { name="Plasmode"; version="0.1.0"; sha256="1qcni9zdckhsnw616jn7rdfd09kbl5wd4hljdja0w73jz1wd1z14"; depends=[arm epiDisplay foreign gbm glm2 lattice latticeExtra lme4 MASS Matrix mgcv nlme nnet RColorBrewer survey survival twang xtable]; broken = true; }; + PoissonSeq = derive2 { name="PoissonSeq"; version="1.1.2"; sha256="1hhx0gv06cp6hm6h36mqy411qn9x15y45crpzbyf8crfs85c6gbg"; depends=[combinat]; broken = true; }; + PopGenKit = derive2 { name="PopGenKit"; version="1.0"; sha256="0l4mbm0cyppgvcw2cbimrv29aiciyj00k8wfwcj5zr8sh7fgfhs4"; depends=[]; broken = true; }; PoweR = derive2 { name="PoweR"; version="1.0.7"; sha256="040wc7hxa8y6bm1rs7ip2skdxmmwksxkyb6xzqgdjp8m7a25fppb"; depends=[Rcpp RcppArmadillo]; broken = true; }; + QuantPsyc = derive2 { name="QuantPsyc"; version="1.5"; sha256="1i9bh88r8zxndzjqsj14qw64gnvm5a9kvhjhzk3qsrvl3qzjgh93"; depends=[boot MASS]; broken = true; }; QuantumClone = derive2 { name="QuantumClone"; version="1.0.0.6"; sha256="1520jgkzp8g7gv7ggqhvlrdnpdyhygqjgsd1my5jq30afdqj6qmp"; depends=[DEoptim doParallel foreach fpc ggplot2 gridExtra NbClust optimx]; broken = true; }; RAhrefs = derive2 { name="RAhrefs"; version="0.1.4"; sha256="0yd7jbv2x711dnhbvwjjg7qhg8h8bh5564amsv9bkqw661i042m3"; depends=[assertthat httr jsonlite testthat]; broken = true; }; + RBestMatch = derive2 { name="RBestMatch"; version="0.1.1"; sha256="1nx1dnhlqi4gad1yw6h91av911wv6dap252hza98dgjysv46spya"; depends=[DiPs mvnfast plyr]; broken = true; }; RCSL = derive2 { name="RCSL"; version="0.99.95"; sha256="1ngzbhrc74ljhidsf7a17k4hyx0igv2srgbf822gm2wawzsmp0y2"; depends=[ggplot2 igraph mclust NbClust pracma RcppAnnoy Rtsne SingleCellExperiment umap]; broken = true; }; - RClickhouse = derive2 { name="RClickhouse"; version="0.6.0"; sha256="16n2d0fvqg5ckf40bjyis0hj4hhffg7k5gfrji9gnyc4xs935lx7"; depends=[bit64 DBI dbplyr dplyr Rcpp]; broken = true; }; + RClone = derive2 { name="RClone"; version="1.0.3"; sha256="1zcb7s88qkpcbkhvawggsckzs5d9s9l9kr2c2njrr86ymq7lgwdj"; depends=[]; broken = true; }; RDFTensor = derive2 { name="RDFTensor"; version="1.3"; sha256="1kfhhn0lb1r61bkgxn7rv1smgk8b7vxbc8y97hdmg5argiywc65i"; depends=[doParallel foreach Matrix pracma]; broken = true; }; + RGCxGC = derive2 { name="RGCxGC"; version="1.1-2"; sha256="03ihqra8q50a98adgxrx8l7js963f41kg2fy3lxzh9zma4gzj62q"; depends=[colorRamps mixOmics ptw Rdpack RNetCDF]; broken = true; }; RGtk2 = derive2 { name="RGtk2"; version="2.20.36.2"; sha256="1m3a3h3yxmr2qpcdyxrwxrdplvhb4rprvd8cnmfwk3zkazd69f9n"; depends=[]; broken = true; }; + RM2 = derive2 { name="RM2"; version="0.0"; sha256="1v57nhwg8jrpv4zi22fhrphw0p0haynq13pg9k992sb0c72dx70a"; depends=[msm]; broken = true; }; RNRCS = derive2 { name="RNRCS"; version="0.2.5"; sha256="19q78l8mh4701vqvr36vqc87n39s5ivzhiy5lvnxbd4dgibk1jr2"; depends=[ggplot2 magrittr rvest xml2]; broken = true; }; ROI_plugin_clp = derive2 { name="ROI.plugin.clp"; version="0.4"; sha256="0fzrb4q2mcf3j4d4j8r354n6fyv2rik0ypp01l54zbm8s2r29bwb"; depends=[Matrix ROI slam]; broken = true; }; - RRF = derive2 { name="RRF"; version="1.9.1"; sha256="135adnf7cfs8gddmmmgmzarjzg0qfrd7l67367yhy2b1k0s5ng1w"; depends=[]; broken = true; }; + RPCLR = derive2 { name="RPCLR"; version="1.0"; sha256="03kpyszsjb656lfwx2yszv0a9ygxs1x1dla6mpkhcnqw00684fab"; depends=[MASS survival]; broken = true; }; RSCABS = derive2 { name="RSCABS"; version="0.9.5"; sha256="193wbf1v18xv098i6abpglb239788d9gjzqbn8p3aai0la6y1pk3"; depends=[gWidgets2 gWidgets2RGtk2 R2HTML RGtk2]; broken = true; }; + RcmdrPlugin_FuzzyClust = derive2 { name="RcmdrPlugin.FuzzyClust"; version="1.1"; sha256="1lg6k3h4n45s6wjkl3ycwfngfr2i6mkhirifhbazsvv297bg0iba"; depends=[clue doParallel foreach ggplot2 iterators MASS Rcmdr reshape2 tcltk2 tkrplot]; broken = true; }; RcppMLPACK = derive2 { name="RcppMLPACK"; version="1.0.10-7"; sha256="07vh1wyp2rxhfrb4vi5njchrby99bynd88na8qjxcnbypkgsrhbl"; depends=[BH Rcpp RcppArmadillo]; broken = true; }; RefFreeEWAS = derive2 { name="RefFreeEWAS"; version="2.2"; sha256="1aya34iz5v3xfpj86x9ab998m7fdwl138ly007mgdayacvqi4a6y"; depends=[quadprog]; broken = true; }; + Reliability = derive2 { name="Reliability"; version="0.0-2"; sha256="12zsicgbjqih3grbs62pw37x8wlkmnyc7g0yz6bqnfb4ym2yb7fg"; depends=[]; broken = true; }; Rhpc = derive2 { name="Rhpc"; version="0.21-247"; sha256="0r4zikqzkcyyvywxq1s8jcq6h559mxilkmzpnl79781hh537jvii"; depends=[]; broken = true; }; + RichR = derive2 { name="RichR"; version="1.0.0"; sha256="0z0ri90jqdmw0vwxd1b4wr9if5cgm1gqpf6g9p1fdvncf4sdi9by"; depends=[magrittr metap plyr reshape2]; broken = true; }; + Rwinsteps = derive2 { name="Rwinsteps"; version="1.0-1.1"; sha256="0kaxhaa65k1hkhl4kqfxyyk6v967xncrdr5hy8b808zlbqriankc"; depends=[]; broken = true; }; + SASPECT = derive2 { name="SASPECT"; version="0.1-1"; sha256="1d3yqxg76h9y485pl5mvlx6ls1076f80b320yvx4zxmqq9yxmaba"; depends=[]; broken = true; }; + SAVE = derive2 { name="SAVE"; version="1.0"; sha256="1m9rrga8x00hlvn0c1jcz6yz14pdm6h3dq14905mq49sw63c7zll"; depends=[coda DiceKriging]; broken = true; }; SDraw = derive2 { name="SDraw"; version="2.1.13"; sha256="1kx8kfga3zspfdgf9vq2lclszrhf3bfwkfhwqri64kn8fdr34jsq"; depends=[covr deldir rgeos sp spsurvey]; broken = true; }; + SEA = derive2 { name="SEA"; version="2.0"; sha256="1pw1509qjjqz63a8biwakdxqgln7kjviacqrjvp1323vf55bi4fs"; depends=[data_table doParallel foreach kolmim KScorrect MASS shiny]; broken = true; }; SEAA = derive2 { name="SEAA"; version="0.9.6"; sha256="0f1j8pq3a0liyjxjlc91v8nm5y0fr8fq7qlhdayvkf1fx96srqs2"; depends=[clusterProfiler ggforce ggplot2 ggpubr ggrepel gridExtra org_Hs_eg_db org_Mm_eg_db reshape2 Rsubread tidyr]; broken = true; }; + SEMModComp = derive2 { name="SEMModComp"; version="1.0"; sha256="1za67470f13z8jsy3z588c7iiiz993d3vjqrb8v9fann2r6sf1md"; depends=[mvtnorm]; broken = true; }; + SII = derive2 { name="SII"; version="1.0.3.1"; sha256="1xvk04b7725ksfd7h4p7px5zanbf6s7xlmjpb7w0nvbi6km2f7ri"; depends=[]; broken = true; }; + SIMMS = derive2 { name="SIMMS"; version="1.3.1"; sha256="0kgaky1hpvvbs2hbzaili9h9pv34c5drfh0d1rc8vf9099xw8575"; depends=[doParallel foreach glmnet MASS randomForestSRC survival]; broken = true; }; + SMC = derive2 { name="SMC"; version="1.1"; sha256="1r4ajgi785lmpnlxrba0n6phmk1f0mb6b5yqk6hx8gng2w8ggclz"; depends=[]; broken = true; }; + SPECIES = derive2 { name="SPECIES"; version="1.0"; sha256="0p45llf2wjr467bqr4pbljfank9zz3fm42yl3i0r3jbkxgz0rjf0"; depends=[]; broken = true; }; + SampleSizeProportions = derive2 { name="SampleSizeProportions"; version="1.0"; sha256="0mvkvx3nni0l8ys68sq3h2zlbjvksdcdzxqlf03k0ca5bbcmdf9l"; depends=[]; broken = true; }; + SimpleTable = derive2 { name="SimpleTable"; version="0.1-2"; sha256="1rkybrp7zlb7cj37799npss1ldic0yf519q5l7a6ikal4yl1afyb"; depends=[hdrcde locfit MCMCpack]; broken = true; }; + Simpsons = derive2 { name="Simpsons"; version="0.1.0"; sha256="1pm6wga1yxc35zgz72plzq23d3l4bbzfdvhszdxmkn1pkk64h8ms"; depends=[mclust]; broken = true; }; SoftRandomForest = derive2 { name="SoftRandomForest"; version="0.1.0"; sha256="1k439hcp53yg6f2x4bgafsri4jjgpva97dphzsdk5icfs5d38bh8"; depends=[boot]; broken = true; }; - SpaDES = derive2 { name="SpaDES"; version="2.0.7"; sha256="186qds86nnlcq754mk9xpnhr75rw0ifrldi2gzjqn5xa07byjqjv"; depends=[quickPlot reproducible SpaDES_core SpaDES_tools]; broken = true; }; SpatialEpiApp = derive2 { name="SpatialEpiApp"; version="0.3"; sha256="0svnnzqshk08s58ishy8xhqch44mb5svgfphkvpgysdd68dgaysr"; depends=[dplyr dygraphs ggplot2 htmlwidgets knitr leaflet mapproj maptools RColorBrewer rgdal rgeos rmarkdown shiny shinyjs SpatialEpi spdep xts]; broken = true; }; StatCharrms = derive2 { name="StatCharrms"; version="0.90.96"; sha256="1451aj1476qjpmxhpbgd8g55i7rp2msml64xsiy25h7x9g6d9w05"; depends=[cairoDevice car clinfun coxme gWidgets2 gWidgets2RGtk2 lattice multcomp nlme R2HTML RGtk2 RSCABS survival]; broken = true; }; + SurvGSD = derive2 { name="SurvGSD"; version="1.0.0"; sha256="0aa5zaf9akkqkxs8iqwnm93sfwakhhhs3qfafbk0vrwmb5yvzzm1"; depends=[flexsurv ldbounds mnormt]; broken = true; }; + Survgini = derive2 { name="Survgini"; version="1.0"; sha256="1gxkdv2j1njbgnwb52vyhz7p2lrcg3hp6sry3kyhp4wkvf6gnhxi"; depends=[survival]; broken = true; }; + SyNet = derive2 { name="SyNet"; version="2.0"; sha256="0mb9dscddkvmkf7l3bbcy4dlfmrvvy588vxdqy5dr783bpa5dkiw"; depends=[tkrplot]; broken = true; }; + TDA = derive2 { name="TDA"; version="1.8.5"; sha256="16dpbgwkp58ibjck3yjziv5p852vn8qxv4v77z17r18909a0j8lp"; depends=[BH FNN igraph Rcpp RcppEigen scales]; broken = true; }; TKCat = derive2 { name="TKCat"; version="0.7.1"; sha256="19iv6srfmvl30mnwxzxwzm5d6fmpgyan490fkszqhq7jjzjhbgg7"; depends=[base64enc DBI dplyr DT future getPass htmltools jsonlite jsonvalidate magrittr markdown promises RClickhouse readr ReDaMoR rlang shiny shinydashboard tidyselect uuid visNetwork xml2]; broken = true; }; TLBC = derive2 { name="TLBC"; version="1.0"; sha256="08w187akbhfbz6nrrf7avf02lrhgj7bbrjmim9gkh4wlbjhzvw67"; depends=[caret HMM randomForest signal stringr]; broken = true; }; - TNRS = derive2 { name="TNRS"; version="0.1.0"; sha256="146shb1dg4iyaanrdr1l8nqpiqf05la1ai34w74z6wsd1mpcchqy"; depends=[jsonlite RCurl rjson]; broken = true; }; TrafficBDE = derive2 { name="TrafficBDE"; version="0.1.0"; sha256="1lnh9lbjxaradivnd1dkd2szggjh2r4v7klpyxb862dxsmdxxrqw"; depends=[caret data_table dplyr lubridate neuralnet RCurl zoo]; broken = true; }; Tushare = derive2 { name="Tushare"; version="0.1.3"; sha256="12aabkwlifc82yiym3yijpfpjhmhfwpw8mz4fb11qm6n4igr1yhg"; depends=[data_table forecast httr tidyverse]; broken = true; }; - TwoPhaseInd = derive2 { name="TwoPhaseInd"; version="1.1.1"; sha256="0xsqiq4x7vmhif9j8zi1smbchwm4fsbgb10i4vxi0biijybizk9z"; depends=[survival]; broken = true; }; + UNF = derive2 { name="UNF"; version="2.0.7"; sha256="1i7aj9w90c1bn581l820iasxhs4ibs7xwbhid7gdkz9f87cz568r"; depends=[base64enc digest]; broken = true; }; UncertainInterval = derive2 { name="UncertainInterval"; version="0.7.0"; sha256="1lywwjkbmlbxhp2ahmsw2f47i0p848cky7xx1lxrg5ydfzq9kzl5"; depends=[car MASS nloptr psych reshape2 shiny zoo]; broken = true; }; VNM = derive2 { name="VNM"; version="7.1"; sha256="19qglcibb7r6jjz0n0piklwfv3hi4jphd6vmyfbm0ccjjkmn5nin"; depends=[Rcpp]; broken = true; }; XPolaris = derive2 { name="XPolaris"; version="1.0.2"; sha256="1l05svscgkv9bzkawi2kp9zhchrhxxma3271b828j34pkrnnmq5m"; depends=[curl dplyr ggplot2 httr magrittr purrr raster sf tidyr]; broken = true; }; - aMNLFA = derive2 { name="aMNLFA"; version="1.1.1"; sha256="1vghwkz14j8vwnkf54ykqgm4vk84wm260pnmaa66xh1466qf4i55"; depends=[devtools dplyr ggplot2 gridExtra MplusAutomation plyr reshape2 stringi stringr]; broken = true; }; aRbs = derive2 { name="aRbs"; version="0.1.3"; sha256="19s4x2w036xllrsarapmp8rvyxcsky82k4h9mfr2rbhdfid6h1f3"; depends=[crayon data_table dlstats dplyr DT ggplot2 lubridate progress purrr rvest shiny shinyBS shinycssloaders shinydashboard stringr xml2]; broken = true; }; + abcdeFBA = derive2 { name="abcdeFBA"; version="0.4"; sha256="1rxjripy8v6bxi25vdfjnbk24zkmf752qbl73cin6nvnqflwxkx4"; depends=[corrplot lattice rgl Rglpk]; broken = true; }; abmR = derive2 { name="abmR"; version="1.0.4"; sha256="1sz27ym4lfzsf8413p3zdq51gcn9lp3bbgjgah0wfas4v3yyfsp4"; depends=[geosphere ggplot2 googledrive gstat gtsummary kableExtra purrr raster rgdal rgeos rnaturalearth rnaturalearthdata sf sp swfscMisc table1 tmap]; broken = true; }; adoption = derive2 { name="adoption"; version="0.6.4"; sha256="1xjkvj1ys2xmjgswqfsrry27zyqcc9hk9khl0j4s72gcc8az8sz6"; depends=[quadprog RandomFieldsUtils tkrplot]; broken = true; }; aemo = derive2 { name="aemo"; version="0.3.0"; sha256="108scwyf0dyvn969cks3ikbj2pf2g4dw051asahx26pl0ggw7ijw"; depends=[assertthat dplyr lubridate stringr]; broken = true; }; agroclim = derive2 { name="agroclim"; version="0.1.0"; sha256="16cyqplzmwziqwkicix0sr06zhc0yx615iv3hda0cxbdyf2rllk3"; depends=[abind cowplot easyNCDF ggforce ggplot2 ggpubr gtable multiApply ncdf4 plyr raster reshape sp zoo]; broken = true; }; + algaeClassify = derive2 { name="algaeClassify"; version="1.2.0"; sha256="1sna5rij2ngpgqfz5cviqdbyr43xph8cbjc4vnm238n72zgg7cb6"; depends=[httr lubridate plyr RCurl rvest taxize XML xml2]; broken = true; }; amber = derive2 { name="amber"; version="1.0.3"; sha256="0kc7g5rb0wrs1id1k0qay56063gpffwvcll38983b1l3k215mxiv"; depends=[classInt doParallel foreach Hmisc latex2exp ncdf4 raster rgdal rgeos scico sp viridis xtable]; broken = true; }; + anchors = derive2 { name="anchors"; version="3.0-8"; sha256="12gd2526y7s2a8i6b9xma2c3sc6zxnwzl6sn8b50hbxizwr8d34j"; depends=[MASS rgenoud]; broken = true; }; anominate = derive2 { name="anominate"; version="0.6"; sha256="01p2qkqf88bzhwywyass5r8dwg2ycflmkbzmsps7fzy0kv3xyb02"; depends=[coda MCMCpack pscl wnominate]; broken = true; }; aopdata = derive2 { name="aopdata"; version="0.2.3"; sha256="0zrk76p52lh5h34a9akm7fn4d71mk8ai9clsyiqya0hl2slymcm8"; depends=[curl data_table httr sf]; broken = true; }; apricom = derive2 { name="apricom"; version="1.0.0"; sha256="1gyd1yln14cn0iswj7sjs4hav6j6d4f3ncps4gqbci5fwha5blcr"; depends=[logistf penalized rms shrink]; broken = true; }; + apsrtable = derive2 { name="apsrtable"; version="0.8-8"; sha256="1qmm89npjgqij0bh6p393wywl837lfsshp2mv9b5izh1sg2qfwvw"; depends=[]; broken = true; }; aptg = derive2 { name="aptg"; version="0.1.1"; sha256="0mdhgc0jrl2za3k2awm92vky2ghcssqq1x2h57ns9b17lwdrsdl4"; depends=[ape brranching phytools taxize xml2]; broken = true; }; arcos = derive2 { name="arcos"; version="1.27"; sha256="02s4vpfsipww6i73lhrdawqlg01gp929n4sx6z869b12jixnq3ni"; depends=[curl dplyr httr jsonlite magrittr stringr tidyr urltools vroom]; broken = true; }; artemis = derive2 { name="artemis"; version="1.1.1"; sha256="1v875xn0mvw7p7jdp6d3hpc4cp8yq2aq0b80rq1c619n9rkjq4ks"; depends=[BH ggplot2 lme4 loo Rcpp RcppEigen RcppParallel rstan rstantools StanHeaders]; broken = true; }; aspline = derive2 { name="aspline"; version="0.1.0"; sha256="1xywp471ly6f0n88lwhpwlg54fizdkjxksli9c60vbi8r56n46mr"; depends=[dplyr fda ggplot2 magrittr Matrix mgcv pryr pspline Rcpp reshape2 rlang splines2 tidyr]; broken = true; }; automultinomial = derive2 { name="automultinomial"; version="2.0.0"; sha256="04rjg3xjlhnkchzvdxqm762z5abm81s5b9czgzmli30zh07bf3fd"; depends=[igraph Matrix numDeriv]; broken = true; }; + badgecreatr = derive2 { name="badgecreatr"; version="0.2.0"; sha256="0mdixklaxky5gs8zm99ky280vxxlbq1mxnaarq6x0d1cb71bzv4l"; depends=[git2r]; broken = true; }; + bapred = derive2 { name="bapred"; version="1.0"; sha256="08kvc4cc984jv08ikwbja8zxidrcdiwi5w88hlqakbm8yc6hzssa"; depends=[affy affyPLM Biobase FNN fuzzyRankTests glmnet lme4 MASS mnormt sva]; broken = true; }; batchr = derive2 { name="batchr"; version="0.0.2"; sha256="0fkrv6dlyla7bbl00f16lypnz5idyjz9kdqslgbx3pnfwx5hngwx"; depends=[chk cli furrr hms hmstimer yesno]; broken = true; }; + bayesmodels = derive2 { name="bayesmodels"; version="0.1.1"; sha256="1m9428fzirpfzypd2zdcqhjv2cm05s3qmlxj4ymz6i1dg32svqzr"; depends=[BASS bayesforecast brms bsts cli crayon dials dplyr magrittr modeltime parsnip purrr rlang Rlgt rstan rstudioapi tibble timetk workflows]; broken = true; }; bcc = derive2 { name="bcc"; version="1.3.1"; sha256="0ac0wasdifd0v47r9sxrsix5hv7masiphn6dyxpqdrd11z7iimgz"; depends=[qcc]; broken = true; }; - biglasso = derive2 { name="biglasso"; version="1.4.1"; sha256="1q3lilqdbra8wm8cs49d9kl044dlsr69mjax1rvhb9jciyfbrbhw"; depends=[BH bigmemory Matrix ncvreg Rcpp RcppArmadillo]; broken = true; }; + betafam = derive2 { name="betafam"; version="1.0"; sha256="1nf5509alqnr5qpva36f1wb7rdnc084p170h91jv89xvzsidqxca"; depends=[]; broken = true; }; + bigmatch = derive2 { name="bigmatch"; version="0.6.2"; sha256="16nmc0n78gzk8x8jhxdilj47gjqqv46sgiivccn5zkv08k1h3jj2"; depends=[liqueueR mvnfast plyr rcbalance]; broken = true; }; binnednp = derive2 { name="binnednp"; version="0.4.0"; sha256="1qswrr982x5hy2vl2fc603j98cjli9l40zzvvjy2l91p8xxrc5dn"; depends=[doParallel fitdistrplus foreach kedd mclust nor1mix Rcpp Rdpack]; broken = true; }; binomialMix = derive2 { name="binomialMix"; version="1.0.1"; sha256="1ak3h0lgjmrv9miwn7fl6jvcp8xdld53swjz71q67q999s42np0m"; depends=[dplyr gmp lubridate MASS rlang Rmpfr stringr]; broken = true; }; blockTools = derive2 { name="blockTools"; version="0.6-3"; sha256="0023p0msfmp8swq4f5aff40m976np7y051x8hjizzw91hrfa4w2n"; depends=[MASS tibble]; broken = true; }; bmd = derive2 { name="bmd"; version="0.5"; sha256="0d4wxyymycb416sdn272292l70s1h2m5kv568vakx3rbvb8y6agy"; depends=[drc]; broken = true; }; bmeta = derive2 { name="bmeta"; version="0.1.2"; sha256="19pm60xpmlanngq4nbibp0n5m98xw24b2xghz92ly31i3mkg2n68"; depends=[forestplot R2jags]; broken = true; }; bnpmr = derive2 { name="bnpmr"; version="1.2"; sha256="0vpqhs1h2mphn9w5yngb7lxvmzrhn7mkj7ca6hykhhg48s2ra98g"; depends=[]; broken = true; }; + boostmtree = derive2 { name="boostmtree"; version="1.5.0"; sha256="18w5h8m6g4aszffyn0ixhzn2bgbrwrrcq2k54b70vbw00xqxmg1q"; depends=[nlme randomForestSRC]; broken = true; }; boostr = derive2 { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; broken = true; }; + bootsPLS = derive2 { name="bootsPLS"; version="1.1.2"; sha256="19ikz3l0qds25hgcxvhsvqy6jyshcdvnxw6774ifl9ylngxvlfh0"; depends=[mixOmics]; broken = true; }; + brunnermunzel = derive2 { name="brunnermunzel"; version="1.4.1"; sha256="1lba5cpiray65zg1pv3xv6yl1xg78rqlwxkcmhgizlh1rhpd430p"; depends=[]; broken = true; }; cairoDevice = derive2 { name="cairoDevice"; version="2.28.2.1"; sha256="040gd6cyaabdi0lhfdba4isqjihj28hdxm7mc129nl863pxkx6qm"; depends=[]; broken = true; }; caliver = derive2 { name="caliver"; version="2.0.0"; sha256="04qa3zrk70c8ak70djfh23jyfxs8293s8wzkk6cs0nyrknhaxzzj"; depends=[ggplot2 lubridate ncdf4 raster rworldmap]; broken = true; }; + caschrono = derive2 { name="caschrono"; version="2.2"; sha256="0lbf7j6p5gzm4kk8sgzcmxwwzg59wp6g6l38m04609lpcsvxkd52"; depends=[Hmisc zoo]; broken = true; }; + catchr = derive2 { name="catchr"; version="0.2.31"; sha256="0mj3cgv2d217hcmyr8x0i83wysxhixgly5y1fs6jb1x09gs1cwnd"; depends=[purrr rlang]; broken = true; }; cecs = derive2 { name="cecs"; version="0.2.4"; sha256="1fm1yrb8kd7f97kgsp5wfp02fspzvndki2aqsfcwb0rlrlckflzf"; depends=[cec2013 stringr]; broken = true; }; + cin = derive2 { name="cin"; version="0.1"; sha256="1pwvy5nh5nrnysfqrzllb9fcrpddqg02c7iw3w9fij2h8s2v6kq5"; depends=[]; broken = true; }; circglmbayes = derive2 { name="circglmbayes"; version="1.3.0"; sha256="0i5aacr7vqznm3rhlznc02xjzjkjliadxhhvsmf8wb2cvivz0wir"; depends=[BH coda ggplot2 Rcpp RcppArmadillo reshape2 shiny]; broken = true; }; clpAPI = derive2 { name="clpAPI"; version="1.3.1"; sha256="0hjpdbmwaww5fznqkkg9jli5y8f8zyd7crn0imdb0xxypmnp7zgf"; depends=[]; broken = true; }; compstatr = derive2 { name="compstatr"; version="0.2.1"; sha256="0pg8yacfb7jvg9xr0gmis8a4g339isd77h6wr8dd6w900q47xac0"; depends=[dplyr fs httr janitor lubridate purrr readr rlang rvest sf stringr tibble tidyr xml2]; broken = true; }; @@ -18994,71 +19152,118 @@ in with self; { contextual = derive2 { name="contextual"; version="0.9.8.4"; sha256="0lww36nymg2cla83jdvl7a42cwn0il20apciz0ddplq8rw2i0a91"; depends=[data_table doParallel foreach Formula iterators itertools R_devices R6 rjson]; broken = true; }; coreheat = derive2 { name="coreheat"; version="0.2.2"; sha256="1mahnd6k7whd7nj9ax1fhpm17j35i6prww06qx691l8dfn954ld9"; depends=[Biobase convertid heatmapFlex WGCNA]; broken = true; }; cplexAPI = derive2 { name="cplexAPI"; version="1.4.0"; sha256="00h2zir1ffzjiglfyq8bsfmgq9z155jr0k0fxv8fsbfyw2x9dg10"; depends=[]; broken = true; }; - crosstable = derive2 { name="crosstable"; version="0.3.2"; sha256="17agqfwcz04d69xsf7k6dybv66wlgjcvhsxym48p7sy8s19vrb6b"; depends=[checkmate dplyr flextable forcats glue lifecycle officer purrr rlang stringr survival tibble tidyr tidyselect]; broken = true; }; + crantastic = derive2 { name="crantastic"; version="0.1"; sha256="0y2w9g100llnyw2qwjrib17k2r2q9yws77mf6999c93r8ygzn4f5"; depends=[]; broken = true; }; + csSAM = derive2 { name="csSAM"; version="1.2.4"; sha256="1ms8w4v5m9cxs9amqyljc2hr1178cz6pbhmv7iiq9yj1ijnl4r1x"; depends=[]; broken = true; }; cuml = derive2 { name="cuml"; version="0.2.1"; sha256="1dmk1gvvzkwfra63qslax9cgqjbsiqam5wcjl955wpb0wdqpa54k"; depends=[ellipsis hardhat magrittr parsnip Rcpp rlang]; broken = true; }; + darts = derive2 { name="darts"; version="1.0"; sha256="07i5349s335jaags352mdx8chf47ay41q7b0mh2xjwn2h9kzgqib"; depends=[]; broken = true; }; + datamap = derive2 { name="datamap"; version="0.1-1"; sha256="0qm4zb9ldg4wz1a7paj5ilr1dhyagq81rk9l2v43hmkv52sssgkv"; depends=[DBI]; broken = true; }; + datapackage_r = derive2 { name="datapackage.r"; version="1.3.5"; sha256="01xx8alj3niznkrn3y2w9j1g60zn1fq0a2clf4r5p2pjyr2rqgy3"; depends=[config future httr iterators jsonlite jsonvalidate purrr R_utils R6 readr rlist stringr tableschema_r urltools V8]; broken = true; }; datazoom_amazonia = derive2 { name="datazoom.amazonia"; version="0.2.0"; sha256="0l24blbscai47rj9s8a0znd5q4mayddp639107r8dib466ykrz3g"; depends=[data_table dplyr geobr googledrive Hmisc janitor labelled lubridate magrittr purrr RCurl readr readxl sf sidrar stringi stringr tibble tidyr XML]; broken = true; }; dcortools = derive2 { name="dcortools"; version="0.1.2"; sha256="0p4qbah5jnb6jraka8bg6cks3namrz66bya2iz98q2adarqd517h"; depends=[ggplot2 Hmisc pheatmap Rcpp RcppArmadillo RcppEigen Rdpack Rfast]; broken = true; }; + dcv = derive2 { name="dcv"; version="0.1.1"; sha256="12c716x8dnxnqksibpmyysqp2axggvy9dpd55s9bhnsvqvi6dshj"; depends=[lmtest]; broken = true; }; + deltar = derive2 { name="deltar"; version="1.0.0"; sha256="1ki89ysz4qlq5z094ybg3aqfcb6g633ccvpj1cg6nri9z5qjwpm1"; depends=[Bchron]; broken = true; }; + diathor = derive2 { name="diathor"; version="0.0.9"; sha256="1p6y89vi37a8i3fwnj7rb0hdggk6qrxnsrw0sbpajzkwv1jvyal0"; depends=[algaeClassify data_table ggplot2 purrr stringdist stringr tibble tidyr vegan]; broken = true; }; diffman = derive2 { name="diffman"; version="0.1.1"; sha256="08b4kqxfg8pmyl2xg8flb581s9wnkdcy5rrmrxp8a89y265qmirx"; depends=[data_table dplyr igraph Matrix progress Rcpp sf tidyverse]; broken = true; }; dpa = derive2 { name="dpa"; version="1.0-3"; sha256="0dmwi68riddi1q4b10c12wx6n7pqfmv30ix5x72zpdbgm72v343h"; depends=[igraph sem]; broken = true; }; dynamicGraph = derive2 { name="dynamicGraph"; version="0.2.2.6"; sha256="1xnsp8mr3is4yyn0pyrvqhl893gdx2y1zv8d2d55aah2xbfk0fjj"; depends=[ggm]; broken = true; }; dynatopmodel = derive2 { name="dynatopmodel"; version="1.2.1"; sha256="0lpfhj69bvagqzzg2kjqvn9xx8f93ii34flrrns20z3bxla6gds9"; depends=[deSolve lubridate maptools raster rgdal rgeos sp topmodel xts zoo]; broken = true; }; + eBsc = derive2 { name="eBsc"; version="4.13"; sha256="0n4v07462kxcsyjdy0cjbkn48ryzfnrvj28gxpsxwzn2sddfpl86"; depends=[Brobdingnag MASS Matrix nlme Rcpp RcppArmadillo]; broken = true; }; + ech = derive2 { name="ech"; version="0.1.1.2"; sha256="1mw68dkm6n6zj27rmyw33gaha1nly1srr6v1d5iib72b1gwnik8l"; depends=[assertthat curl dplyr fs geouy glue haven janitor labelled laeken purrr readxl rlang srvyr statar stringr survey tidyr]; broken = true; }; + edbuildr = derive2 { name="edbuildr"; version="0.3.0"; sha256="19fsk8qkxyzncn614fy6hmmxpv1dikqghs101hbzd0g0a511xk8f"; depends=[dplyr magrittr openxlsx scales stringr tidyselect]; broken = true; }; efts = derive2 { name="efts"; version="0.9-0"; sha256="1cdn37sij3q73z9gal6x3nnnds55whfj5ywyww119hx092xcb2h4"; depends=[lubridate magrittr ncdf4 plyr stringr udunits2 xts]; broken = true; }; - emIRT = derive2 { name="emIRT"; version="0.0.11"; sha256="1h91q9vi9cv14bmkaakyynw2z9sx51w0c2kw2in0x91wx7scmd0p"; depends=[pscl Rcpp RcppArmadillo]; broken = true; }; + egcm = derive2 { name="egcm"; version="1.0.12"; sha256="0nssf5six1j7z6fss7478zdbsfx60myzw833m7nsnaf1r8n4ixaf"; depends=[ggplot2 MASS pracma quantmod tseries urca xts zoo]; broken = true; }; + emma = derive2 { name="emma"; version="0.1-0"; sha256="0psd8lrbcqla8mkhp0wlassaaimgwlmqy5yv2wwcq59mc5k1v27f"; depends=[clusterSim earth]; broken = true; }; emstreeR = derive2 { name="emstreeR"; version="2.2.2"; sha256="0lchkkn6s265xnk25bprijlc6nl62nwcp0l9nwplyw7q492ysg0q"; depends=[BBmisc BH ggplot2 Rcpp RcppArmadillo RcppMLPACK scatterplot3d]; broken = true; }; endogMNP = derive2 { name="endogMNP"; version="0.2-1"; sha256="0maxcp321ngbxrg0i23nlwhj849v771xahh53367x928ss4f8v7i"; depends=[]; broken = true; }; epiGWAS = derive2 { name="epiGWAS"; version="1.0.2"; sha256="0jqblfmz02za3b2pgi15379bzgh98yv5kyv8kh0lkzhrmpgph2zj"; depends=[DescTools glmnet matrixStats SNPknock]; broken = true; }; + eqtl = derive2 { name="eqtl"; version="1.1-7"; sha256="0xfr8344irhzyxs9flnqn4avk3iv1scqhzac5c2ppmzqhb398azr"; depends=[qtl]; broken = true; }; evaluator = derive2 { name="evaluator"; version="0.4.3"; sha256="1gccymjb1ad3xw3kmqafchazv9rid6v6c3h8w96ai5b2jh8zlgwk"; depends=[cli crayon dplyr extrafont ggplot2 magrittr mc2d purrr readr readxl rlang rstudioapi scales stringi tibble tidyr vctrs viridis]; broken = true; }; eventstudies = derive2 { name="eventstudies"; version="1.2.2"; sha256="01vpd0gnxaibxn3nq6618rxlwapm86idz86n0wj5kfz4a9kj7lsx"; depends=[boot sandwich testthat xts zoo]; broken = true; }; expands = derive2 { name="expands"; version="2.1.3"; sha256="00zb57gmpj86c7rvpqywpn4c5wl51immps935n3hd2fyk73vqljh"; depends=[ape commonsMath flexclust flexmix gplots matlab moments NbClust plyr RColorBrewer rJava]; broken = true; }; + expert = derive2 { name="expert"; version="1.0-0"; sha256="0y9vcigvzhymalpv31b9nvmr86z1dz7x29yj838vks0dsv23rgrf"; depends=[]; broken = true; }; facilitation = derive2 { name="facilitation"; version="0.5.2"; sha256="0gyqa3njyynvdhfziq33xqc7cjhszii67mk8809ncvh6abkdx1hw"; depends=[animation Matrix Rcpp]; broken = true; }; + factorQR = derive2 { name="factorQR"; version="0.1-4"; sha256="1vl01fm5qfyhnqbl5y86vkr50b8cv07vzlqs3v6smqaqq6yp4lv4"; depends=[lattice]; broken = true; }; + factualR = derive2 { name="factualR"; version="0.5"; sha256="1wz8ibcmilcx62yy29nd2i1pdmjf7fm0g9i5s58gdn8cjlhnw1jl"; depends=[RCurl RJSONIO]; broken = true; }; fasteraster = derive2 { name="fasteraster"; version="1.1.1"; sha256="1ycr2h046jds2758xvxn00rhglx3zarbzn3r38j66j5pnz2iiq4f"; depends=[Rcpp]; broken = true; }; fctbases = derive2 { name="fctbases"; version="1.1.0"; sha256="1jf6ngdph45l105cib13lghan7d68hsjqdr8wsjz2kls8il6kz9s"; depends=[Rcpp RcppArmadillo]; broken = true; }; + fdacluster = derive2 { name="fdacluster"; version="0.1.0"; sha256="17vk3v8saf3xqab8h92k88l2xfwa3mb0x40p1mdgywgg23nvk3mm"; depends=[dplyr ggplot2 magrittr nloptr purrr Rcpp RcppArmadillo tibble tidyr]; broken = true; }; feedeR = derive2 { name="feedeR"; version="0.0.10"; sha256="1p64c7ibwn6k5k3vsjxrcjr84czild7g8bqw0yv4axk52vk5jfkx"; depends=[digest dplyr lubridate readr stringr tibble xml2]; broken = true; }; fidap = derive2 { name="fidap"; version="0.0.3"; sha256="0zq07395qx59xxb3cj5axhpkwnad2h88qbm3aan43q5cip9wi2bx"; depends=[httr jsonlite]; broken = true; }; + fisheyeR = derive2 { name="fisheyeR"; version="0.9"; sha256="1w6va7gakqq2q8hsvdszpn8s2ysdfc648bk5p5v3wbl5s403bci8"; depends=[tkrplot]; broken = true; }; fishflux = derive2 { name="fishflux"; version="0.0.1.5"; sha256="0ni3r37s6dvj3mmr04fnr7fird4x2wxdxq9vxzabcgmx9f4ydfiz"; depends=[BH curl dplyr fishualize ggplot2 httr plyr Rcpp RcppEigen RcppParallel rfishbase rstan rstantools StanHeaders tidybayes tidyr]; broken = true; }; - fishualize = derive2 { name="fishualize"; version="0.2.2"; sha256="19iq2n9pxqf1yl6k2231lrc0ny5r7s0h5s59whrhwfh328q5cfqa"; depends=[curl downloader dplyr ggplot2 gridExtra httr magrittr png rlang scales stringr tidyr]; broken = true; }; + fitdc = derive2 { name="fitdc"; version="0.0.1"; sha256="1b1abib7jkl7a6r686r53qjw2ywb9q2h67is8691kkaqxpawg30p"; depends=[]; broken = true; }; flightplanning = derive2 { name="flightplanning"; version="0.8.4"; sha256="1n0mjrqlnfv4fvl512slw3d3vmlcn2lhf89jlfg2s0xfrd9k4pq8"; depends=[rgdal rgeos sp]; broken = true; }; + fpca = derive2 { name="fpca"; version="0.2-1"; sha256="13b102026xlfb7c2rb3xsqsymm7xpmaxppaafjkb5dx0b1lz0jrc"; depends=[sm]; broken = true; }; fpmoutliers = derive2 { name="fpmoutliers"; version="0.1.0"; sha256="108bp3smk9jnckd5237xly4ywmal03rq1kidq5z61l6zrhc3yfh9"; depends=[arules doParallel foreach Matrix pmml pryr R_utils XML]; broken = true; }; fractalRegression = derive2 { name="fractalRegression"; version="1.0"; sha256="0lkxm3f9xz1c4kc81rfhd521q9jzsdb3ngrgn7nsawllpi2zrgwb"; depends=[Rcpp RcppArmadillo]; broken = true; }; - fssemR = derive2 { name="fssemR"; version="0.1.6"; sha256="1l80anvlf21kvwb95w5mn0i2q773z0vbznx1lqvgsawprhcdiv20"; depends=[glmnet igraph MASS Matrix mvtnorm qtl Rcpp RcppEigen stringr]; broken = true; }; + fsMTS = derive2 { name="fsMTS"; version="0.1.5"; sha256="1vxj9wkzpbk44hby4fdyhj72748c65by612kpphs6vmgzmw4y471"; depends=[freqdom glasso lars mpmi randomForestSRC]; broken = true; }; + ftnonpar = derive2 { name="ftnonpar"; version="0.1-88"; sha256="0df9zxwjpfc939ccnm1iipwhpf76b34v0x74nsi1mm1g927dfl0i"; depends=[]; broken = true; }; fulltext = derive2 { name="fulltext"; version="2.0"; sha256="104wkas9azyb2drfaz1hrgbx2ilbb0k2mb8411l10rsbkqva099f"; depends=[aRxiv crul data_table digest fauxpas hoardr jsonlite magrittr microdemic pdftools rcrossref rentrez rplos storr tibble xml2]; broken = true; }; + fuzzyFDR = derive2 { name="fuzzyFDR"; version="1.0"; sha256="0zd8i9did0d9gp42xjmwrccm32glabvvy08kl8phhwb1yaq53h7w"; depends=[]; broken = true; }; gWidgets2RGtk2 = derive2 { name="gWidgets2RGtk2"; version="1.0-7"; sha256="14c933j0wj3lb5da75zxg3w3mfqh0nqk8rczbi4dnqd8sna6jks9"; depends=[gWidgets2 memoise RGtk2]; broken = true; }; gdmp = derive2 { name="gdmp"; version="0.2.0"; sha256="0fy8x9l6swrb78apwq9d9msz2y8dkfd2fkyp1pkmzxwdb85lmcdm"; depends=[]; broken = true; }; - geneticae = derive2 { name="geneticae"; version="0.2.0"; sha256="1rjl5jwx1a0kkbv0bncyhj7d4r8i70wbvf8czf2hl17q3iwfdwyd"; depends=[bcv calibrate dplyr GGEBiplots ggforce ggplot2 MASS matrixStats missMDA pcaMethods prettydoc reshape2 rrcov scales tidyr]; broken = true; }; + geneNetBP = derive2 { name="geneNetBP"; version="2.0.1"; sha256="0sp1chyln5k2zsq7cdhvrqxwr2nhrll1pdl1l5g6fd4gjl2m1nwk"; depends=[bnlearn ggm gRain graph igraph Rgraphviz scales]; broken = true; }; geobr = derive2 { name="geobr"; version="1.6.5"; sha256="08kl0215q524dq5scx2cm11a7m65xh0wzryl71grrlbqm5000pjj"; depends=[curl data_table httr sf]; broken = true; }; geostatsp = derive2 { name="geostatsp"; version="1.8.6"; sha256="1ciyw84y5zbwsfqvl5dhq8swfpkqcmzhhvdm9hr5rhj3497sls9j"; depends=[abind Matrix numDeriv raster sp]; broken = true; }; gfmR = derive2 { name="gfmR"; version="1.1-0"; sha256="0qzzbcra1fnbp0h31b1as20yhmqmi7p62xrhikj64an9avg9b277"; depends=[faraway nnet]; broken = true; }; + ggRandomForests = derive2 { name="ggRandomForests"; version="2.0.1"; sha256="0f8m0j79d8wbac14zk1s8812rz6vgf04bz1iqq8p4d3sxwnvaj7q"; depends=[ggplot2 randomForest randomForestSRC survival tidyr]; broken = true; }; ggguitar = derive2 { name="ggguitar"; version="0.1.1"; sha256="1lmfs54h91gzcxin37v4flkywbq3fs648mm1h9ak03xlj5nagzsi"; depends=[dplyr ggplot2 gridExtra lazyeval readr tibble]; broken = true; }; glacierSMBM = derive2 { name="glacierSMBM"; version="0.1"; sha256="0117fzz2b1lccs0kkwz59w2yysi72j54yvz7373pz11w7rjds84f"; depends=[raster sp udunits2]; broken = true; }; + googlesheets = derive2 { name="googlesheets"; version="0.3.0"; sha256="11q07nxys72wkxx9mawmjyf20gvwvrb7h3gpa73h6lgh2vgrwnv8"; depends=[cellranger dplyr httr jsonlite purrr readr stringr tibble tidyr xml2]; broken = true; }; graphscan = derive2 { name="graphscan"; version="1.1.1"; sha256="1dgjb0grdymhimdgwnddjcivgy2i9r1i1nni4v9mx0447skcahk9"; depends=[ape rgl snowfall sp]; broken = true; }; + grouped = derive2 { name="grouped"; version="0.6-0"; sha256="1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976"; depends=[MASS]; broken = true; }; + gsbm = derive2 { name="gsbm"; version="0.2.1"; sha256="16j4g0wl9phmx85dbrzxsdjcv0nnipgj214fvbz9m6n66khr5pkp"; depends=[doParallel foreach Matrix RSpectra softImpute]; broken = true; }; + guf = derive2 { name="guf"; version="1.0.2"; sha256="1dfmja2da211pcid4hr7x9q0sgz37756rpykm1ax862avdl8hsmc"; depends=[]; broken = true; }; + gwdegree = derive2 { name="gwdegree"; version="0.1.1"; sha256="0p06hjp7vay83kbpqsgfr1d8z3ayv483rxbv86fdka94gvi1sjyc"; depends=[dplyr ergm ggplot2 gtools magrittr network scales shiny shinydashboard sna tidyr]; broken = true; }; + gwerAM = derive2 { name="gwerAM"; version="1.0"; sha256="1c3rzd1jf52a4dn63hh43m9s9xnjvqn67amlm9z1ndrnn6fwfg1b"; depends=[MASS Matrix]; broken = true; }; + gwsem = derive2 { name="gwsem"; version="2.1.4"; sha256="0qqcbkxkkfwraz750wvk1f86mqy6f2ndkspd8qr0ypnnlh3i0yzl"; depends=[BH data_table lifecycle OpenMx qqman Rcpp]; broken = true; }; + haarfisz = derive2 { name="haarfisz"; version="4.5"; sha256="1qmh4glwzqwqx3pvxc71rlcimp1l0plgdf380v9hk0b4gj7g3pkf"; depends=[wavethresh]; broken = true; }; happybiRthday = derive2 { name="happybiRthday"; version="0.0.1"; sha256="0rrvi5kx09p74xwxvqcwibbh4qjlk4jxb89grx74chjxk9ak2yv8"; depends=[data_table dplyr gh lubridate tidyr]; broken = true; }; hddtools = derive2 { name="hddtools"; version="0.9.4"; sha256="011yhs8c6riimz63pa2am56n5aip2yk5gryx2amvk29pzp1v6my9"; depends=[curl raster readxl rgdal sp tidyr XML zoo]; broken = true; }; hdpGLM = derive2 { name="hdpGLM"; version="1.0.0"; sha256="04mn0cbbx66218rsd273yh29h28f1xl8k0whwlyn6hrg035mlk0x"; depends=[coda data_table dplyr formula_tools ggjoy ggplot2 ggpubr ggridges Hmisc isotone LaplacesDemon magrittr MASS MCMCpack mvtnorm purrr questionr Rcpp RcppArmadillo rprojroot stringr tibble tidyr tidyverse]; broken = true; }; healthforum = derive2 { name="healthforum"; version="0.1.0"; sha256="13ih00amv9hrpngm6pxc8vzqzhx8c0yqgaprxdcp5li90lg5r3av"; depends=[magrittr purrr rvest stringr tokenizers xml2]; broken = true; }; hockeyR = derive2 { name="hockeyR"; version="0.1.1"; sha256="1rzm67ib4i7qa0x302g9k5bm5vabg39l1da5brnkkh9fp6v37lb6"; depends=[dplyr glue httr janitor jsonlite lubridate magrittr polite purrr rvest stringr tidyr zoo]; broken = true; }; horserule = derive2 { name="horserule"; version="1.0.0"; sha256="0d348pn0ld7lr9lfl1z05905l9kl296j0xic1pib6r5l1c5600r9"; depends=[gbm ggplot2 inTrees MASS mvnfast randomForest RColorBrewer Rdpack]; broken = true; }; - htestClust = derive2 { name="htestClust"; version="0.2.0"; sha256="1nwj74w5hyz929jz2qci12x1zpk9gva75gn68k70l6xc5vya60qn"; depends=[bootstrap MASS]; broken = true; }; iRF = derive2 { name="iRF"; version="2.0.0"; sha256="1ll4lxg743p2zipxcq13yjsc7j7dk766dcyixwxilllbisg0dh8y"; depends=[AUC data_table doParallel dplyr foreach Matrix RColorBrewer Rcpp]; broken = true; }; + ic50 = derive2 { name="ic50"; version="1.4.2"; sha256="1a5ddmbdfr3ls132fvalbkh4yaawv9k58rgpy54s5qddrm6aas2s"; depends=[]; broken = true; }; + identity = derive2 { name="identity"; version="0.2-1"; sha256="1j5wb5cj5j49in2g6r1shdm4ri4cfzj22hpqazvcmq4dm291sdi9"; depends=[]; broken = true; }; ideq = derive2 { name="ideq"; version="0.1.4"; sha256="06xk9ghvh3fb79lbkmbqsk07xj06qaigiw41rzbi3bji3fjq1prw"; depends=[matrixcalc mvtnorm pdist Rcpp RcppArmadillo rgen]; broken = true; }; + ifultools = derive2 { name="ifultools"; version="2.0-23"; sha256="16a7rbvlym3bnfm93ikr5kl0l86ppk0s41fva6idvcx765g3fqkk"; depends=[MASS splus2R]; broken = true; }; + imputePSF = derive2 { name="imputePSF"; version="0.1.0"; sha256="0xfd2mybg0cbi3n35j28s4xq4iwr5rq4mqwgdqml7l2rlzidcwc8"; depends=[PSF]; broken = true; }; inTrees = derive2 { name="inTrees"; version="1.2"; sha256="1mwn2ijkyw0y9xcgrr56wxd2326ikarlsi79l59dplvlx2iwbi6c"; depends=[arules data_table gbm RRF xgboost xtable]; broken = true; }; incadata = derive2 { name="incadata"; version="0.9.1"; sha256="0987zazkp3cxvk88i3yqb70s2i1cg108vc8wyhh2867s3rqdrpgh"; depends=[decoder rvest sweidnumbr xml2]; broken = true; }; + inference = derive2 { name="inference"; version="0.1.0"; sha256="0j92isfkbhk13yx2hd3a5dd7ikcbgjc04zisd1n5kmg6ajw2aj6r"; depends=[sandwich]; broken = true; }; interacCircos = derive2 { name="interacCircos"; version="1.0.0"; sha256="1waj0saavvaw2qzhbwcj1k0a2dnmq7zbkdnmb93xj6j1lhfjhbdy"; depends=[htmlwidgets jsonlite plyr RColorBrewer]; broken = true; }; ipmisc = derive2 { name="ipmisc"; version="6.0.2"; sha256="1dn815p2k1v371pv5fra6541zwc1hyjzxlx11m8pgfcyrfgmicyk"; depends=[dplyr magrittr rlang tibble tidyr zeallot]; broken = true; }; + ipptoolbox = derive2 { name="ipptoolbox"; version="1.2"; sha256="0scbny4crgr23qcp0vgsxhwmj5g5q5c1c4mb5mmb5njyvc34s01l"; depends=[AlgDesign copula evd kolmim triangle]; broken = true; }; iq = derive2 { name="iq"; version="1.9.1"; sha256="1n4hdkw37364ilc8v3bffmnwd7r8cpysn7jssf9h9jxh9pyd612y"; depends=[]; broken = true; }; + isoreader = derive2 { name="isoreader"; version="1.3.2"; sha256="0d0h57imbis7g58gdn7j0pwmc1s71b8ymqwqkg3byagd0yhrxf0w"; depends=[dplyr future glue lubridate magrittr progress purrr R_utils readr rlang stringr tibble tidyr tidyselect UNF vctrs]; broken = true; }; itemanalysis = derive2 { name="itemanalysis"; version="1.0"; sha256="1ksbd69mca45jlr2gpars87cf4jfm5rx6sz009sv6a83x831x5rq"; depends=[car ggplot2 polycor]; broken = true; }; jdx = derive2 { name="jdx"; version="0.1.4"; sha256="0jqf0nkdyv9g4rifzlkls0n64fdcma2yphwl478772jlgfmxm2jb"; depends=[rJava]; broken = true; }; joineRmeta = derive2 { name="joineRmeta"; version="0.1.2"; sha256="0lkj3rry8kvdcl3dxrkvnql8rl3fsgc4lk5qdifhl41aws2q7ccs"; depends=[ggplot2 gridExtra gtools JM joineR lme4 MASS Matrix meta msm statmod survival]; broken = true; }; jsr223 = derive2 { name="jsr223"; version="0.3.4"; sha256="0rir9v0qhnbl2rgkx1qz2ydj68ba9ccbdzsg6y1acczdhpl03j51"; depends=[curl jdx R6 rJava]; broken = true; }; kmcudaR = derive2 { name="kmcudaR"; version="1.1.0"; sha256="16dkv9ag5375zc23nqakbg7v6knxvh1pips9rjsls0d7rw2bg1bs"; depends=[Rcpp RcppEigen]; broken = true; }; + kolmim = derive2 { name="kolmim"; version="1.0"; sha256="0g1i0cazi4nhfwdd3ywqrar1sn7bw77w38qjii045w5vqg05srkp"; depends=[]; broken = true; }; + laercio = derive2 { name="laercio"; version="1.0-1"; sha256="0la6fxv5k9zq4pyn8dxjiayx3vs9ksm9c6qg4mnyr9vs12z53imm"; depends=[]; broken = true; }; lass0 = derive2 { name="lass0"; version="1.1.0"; sha256="01fafgyhi3fw8ldjw2gf0z9w1si7il3ailwm197fxmw4wqgys9fl"; depends=[doRNG foreach ismev lpSolve]; broken = true; }; + lba = derive2 { name="lba"; version="2.4.4"; sha256="0izqndm992zv3sg8v5lpnxbdbxhpxl6hq3bf6xgq3pnw8vl3f6nb"; depends=[alabama MASS plotrix rgl scatterplot3d]; broken = true; }; + lcda = derive2 { name="lcda"; version="0.3"; sha256="1ximsyn6qw2gfn7b1hdpbjs6h6nk7hrignlii0np1lbf0k8l4xxl"; depends=[poLCA]; broken = true; }; libproj = derive2 { name="libproj"; version="8.1.0-1"; sha256="16mavs0kpbn1lskfgyzgw5ns270kdvvh2991c8w26cyl23zrcys6"; depends=[cpp11 rappdirs]; broken = true; }; likeLTD = derive2 { name="likeLTD"; version="6.3.0"; sha256="1mjf4667xd9pf2684d7vqaj54l5s9pgljn4vkfp32wzbfknq6y8r"; depends=[DEoptim gdata ggplot2 gtools rtf]; broken = true; }; + limitplot = derive2 { name="limitplot"; version="1.2"; sha256="0wj1xalm80fa5pvjwh2zf5hpvxa3r1hnkh2z9z285wkbrcl0qfl2"; depends=[]; broken = true; }; + lisp = derive2 { name="lisp"; version="0.1"; sha256="025sq46277q9i21189cbmx5dnrh5wfshc5k6la1wjilhr1iqf6nj"; depends=[]; broken = true; }; lmSupport = derive2 { name="lmSupport"; version="2.9.13"; sha256="0ln5c91mbxkymgnv2nw5m3nrm5bwckpikgb9x1qhmjc55m98wkb8"; depends=[AICcmodavg car gplots gvlma lme4 pbkrtest psych pwr]; broken = true; }; + lmem_qtler = derive2 { name="lmem.qtler"; version="0.1.1"; sha256="0qbllj66y294n1m8dsyrnwyvzscbzg8mb2dmjyghcrfaz925vkin"; depends=[lattice lme4 pastecs qtl stringr]; broken = true; }; + lmeresampler = derive2 { name="lmeresampler"; version="0.2.0"; sha256="1qjxv3vrgw183hvya2k4qidnnx9w64lcksjm6v727kcigl3x9h1f"; depends=[catchr dplyr forcats ggdist ggplot2 HLMdiag magrittr Matrix nlmeU purrr statmod]; broken = true; }; + lmfor = derive2 { name="lmfor"; version="1.5"; sha256="1r301ajcp9ag23n0nw1rgwg8ss5cvinwqargbdg0jpqbhdrgaq7y"; depends=[magic nlme spatstat]; broken = true; }; maGUI = derive2 { name="maGUI"; version="3.0"; sha256="1ak2sa6y766v5zh54bf7j9hklmkia40nsdchyw834ybb9ijjyjsm"; depends=[Biobase gWidgets2 gWidgets2RGtk2 impute limma Rgraphviz RGtk2 ssize]; broken = true; }; machQA = derive2 { name="machQA"; version="0.1.4"; sha256="1rdrjy9sxql2c9y691a1jrmgsv7m1ihsschixxb6wc7aahf7mav6"; depends=[machina plyr]; broken = true; }; machina = derive2 { name="machina"; version="0.1.6"; sha256="009mzqb5jgnilj9b5ldmm5600008bljlqacm8jjxvqsfnfdfg8zv"; depends=[DT httr jsonlite lubridate rhandsontable xts]; broken = true; }; + matchMulti = derive2 { name="matchMulti"; version="1.1.9"; sha256="0357bgwf6xcq19f1xfxv26gk6drq806jknjq4h32rldqn0sfab0p"; depends=[coin dplyr Hmisc MASS mvtnorm plyr rcbsubset rlang sandwich tidyr weights]; broken = true; }; mcmcabn = derive2 { name="mcmcabn"; version="0.4"; sha256="0ym7ngai8pv9xalh1s53p8f96s8xpc05zi6ryih2rjv449ib06kq"; depends=[abn coda cowplot ggplot2 ggpubr gRbase]; broken = true; }; - metabolighteR = derive2 { name="metabolighteR"; version="0.1.2"; sha256="1v50b0pp2hzn6b4xrlclaks3kd315rir44acm24mmqhqybj6lhls"; depends=[crayon dplyr httr magrittr purrr]; broken = true; }; + mcsm = derive2 { name="mcsm"; version="1.0"; sha256="13sx7s3ywis5n4a70ld2szld9fb8jkfsc82dy6iskhy17vy8pml0"; depends=[coda MASS]; broken = true; }; + meaRtools = derive2 { name="meaRtools"; version="1.0.4"; sha256="1nxyvdq4670696mhg0svxxlvk9hnr8szai8b18pw6754kmw1bjvn"; depends=[emdist ggplot2 gridExtra gtools lattice plyr Rcpp reshape2]; broken = true; }; + met = derive2 { name="met"; version="0.1.0"; sha256="0714103xzc4n178307czxmcv7ygjiigjr9b6xnj240ljp7qmln19"; depends=[DiPs]; broken = true; }; miceMNAR = derive2 { name="miceMNAR"; version="1.0.2"; sha256="1s607icaf3c25mn8xdi3zkzmm8m7qd9a6vjdlz5j7ig2gc9f2y2d"; depends=[GJRM mice mvtnorm pbivnorm sampleSelection]; broken = true; }; microclustr = derive2 { name="microclustr"; version="0.1.0"; sha256="04xn8p4wgmxq1jbxawq0rhx6l7y1kddlbdfid8zsi4x4arkz7hvp"; depends=[Rcpp]; broken = true; }; migrbc = derive2 { name="migrbc"; version="2.0.9"; sha256="1nbxdm70a9lvbp4sw78719hdpbqnziw1y7r4xk8i390q2c195am1"; depends=[dplyr futile_logger lubridate Rcpp stringr]; broken = true; }; @@ -19067,25 +19272,27 @@ in with self; { mixlink = derive2 { name="mixlink"; version="0.1.5"; sha256="0ywgrcplhspc0x5fniw52xqz20y7j9mwgy4ky8lv3vii659mr52m"; depends=[mvtnorm numDeriv Rcpp RcppGSL]; broken = true; }; mlbstatsR = derive2 { name="mlbstatsR"; version="0.1.0.3"; sha256="0rcjfbi383rdk2fyrw47ni0jrzp7yj2sr8xzxvk3gmh321i3pn5d"; depends=[dplyr ggplot2 ggtext glue httr janitor jsonlite purrr rvest stringr tibble tidyr xml2]; broken = true; }; mleap = derive2 { name="mleap"; version="1.1.0"; sha256="0s15srbnk8fs5vj12gdszpg6g563q17v42fng2rydkgi4q7m2vj6"; depends=[digest fs jsonlite purrr rJava sparklyr tibble]; broken = true; }; + mlgt = derive2 { name="mlgt"; version="0.16"; sha256="1nvdq6mvgr39ikkf73aggsb6pmbw132injj8fdkr8hgcmwm6lgd9"; depends=[seqinr]; broken = true; }; mmpca = derive2 { name="mmpca"; version="2.0.1"; sha256="05vir7hjv5dccfcizyn5n6qxx2p53111if16l44a7ifg5k599xj9"; depends=[digest gsl Rcpp RcppEigen]; broken = true; }; mnlogit = derive2 { name="mnlogit"; version="1.2.6"; sha256="0dfwpkl8g7ap5xr48smiv8vdbamd2r1liy9nwpsn0kcsr9cj65n9"; depends=[Formula lmtest mlogit]; broken = true; }; + mobsim = derive2 { name="mobsim"; version="0.2.0"; sha256="0an8j5kj0cs1bjz9kwzwc54hm0zaiz5rsaw78ihldw0mx5n175gn"; depends=[Rcpp sads vegan]; broken = true; }; modcmfitr = derive2 { name="modcmfitr"; version="0.1.0"; sha256="1d6fi7pc10w2a97h1prhkg5cvzmxjp11c5bwrz90zry0m8anwjyh"; depends=[gtools nloptr]; broken = true; }; - monoreg = derive2 { name="monoreg"; version="1.2"; sha256="16n622j1j998a5fhn1c1qbzk5bfa5h09d95ry89gsd00p40hqg0a"; depends=[]; broken = true; }; mosaic_find = derive2 { name="mosaic.find"; version="0.1.2"; sha256="1fzgksh8sp701qjfrvjl2bg967qjkjpilxsfkrazhw71cgmzjgjl"; depends=[minpack_lm]; broken = true; }; - moult = derive2 { name="moult"; version="2.2.0"; sha256="15r5s5ghqip28g12bwcn407lhgfv6408gndw4nvm3nhi8z0hwvrd"; depends=[Formula Matrix]; broken = true; }; + mpa = derive2 { name="mpa"; version="0.7.3"; sha256="0mhnsbgr77fkn957zfiw8skyvgd084rja1y4wk5zf08q5xjs2zvn"; depends=[network]; broken = true; }; mssqlR = derive2 { name="mssqlR"; version="1.0.0"; sha256="0qdnm7cx9cg14vfcnkmcjqr1jpxsw8xlrbnxldvzz44mzv2n878l"; depends=[magrittr RODBC]; broken = true; }; multdyn = derive2 { name="multdyn"; version="1.6"; sha256="06yab2lmxp7lc7zjk8n194mn5vza0yjbp276iair3ry35my4h3v8"; depends=[data_table ggplot2 Rcpp RcppArmadillo reshape2]; broken = true; }; - multilinguer = derive2 { name="multilinguer"; version="0.0.4"; sha256="0kavgvbzv8bvv9qlr92j8mx7b802w513mqalrdyln0pw36c9i13x"; depends=[askpass fs rstudioapi rvest sys usethis xml2 zip]; broken = true; }; - multinomineq = derive2 { name="multinomineq"; version="0.2.1"; sha256="09h5nccfcrnl78rdxwsw5cqirfq40a6x4dmpkibc475z3xndk2rm"; depends=[coda quadprog Rcpp RcppArmadillo RcppProgress RcppXPtrUtils Rglpk]; broken = true; }; mvst = derive2 { name="mvst"; version="1.1.0"; sha256="03q0kdychsmn4wcn50b6dqhxn4f2mjvrr5rac942xdv75w8qklc9"; depends=[MCMCpack mnormt mvtnorm]; broken = true; }; + mwaved = derive2 { name="mwaved"; version="1.1.8"; sha256="092sqd9harx289bgghw9x495llzhab0vkgkjka5jhi4ad1rfk3vh"; depends=[Rcpp shiny]; broken = true; }; nCal = derive2 { name="nCal"; version="2021.9-12"; sha256="133dpy2rp8sabwdlk0wjxs9rzixzcja73im94qaw26z5xsnaydhf"; depends=[drc gdata gWidgets2 kyotil]; broken = true; }; + namer = derive2 { name="namer"; version="0.1.5"; sha256="1687x6rc46bp2bmqkixzry5cc7lxjqwjk8ngrbg2fk7mzb4pwvnq"; depends=[dplyr fs glue magrittr purrr rstudioapi tibble]; broken = true; }; nearfar = derive2 { name="nearfar"; version="1.2"; sha256="116rq797a5fascirz8xg465fywjf40j1k5czryvqzpik0if0w00r"; depends=[car GenSA MASS nbpMatching]; broken = true; }; - neatStats = derive2 { name="neatStats"; version="1.8.1"; sha256="0kxhl4h3xq6qg4fpxxji3j3p0yg5g271c3p9zbngkp7q8fiqz5vd"; depends=[BayesFactor bayestestR car Exact ez ggplot2 ggpubr logspline MBESS plyr PoweR pROC viridis]; broken = true; }; - not = derive2 { name="not"; version="1.2"; sha256="1671j3yirzdyhb02khx1yddslyig5jlnb0bdbgdlkb21n4zwaqa4"; depends=[]; broken = true; }; + nontarget = derive2 { name="nontarget"; version="1.9"; sha256="0ndqcr73sja5ks5kdahhakpz9lw3rp26imklagdv4f5agqnb608s"; depends=[enviPat mgcv nontargetData]; broken = true; }; + nontargetData = derive2 { name="nontargetData"; version="1.1"; sha256="07cdbpmn64sg4jfhljdcx503d55azyz58x7nkji044z3jmdryzqw"; depends=[]; broken = true; }; ntwk = derive2 { name="ntwk"; version="1.0.0"; sha256="1c12c3pq992f02z3ikx17zv2djq9d9ly232ha0j5jswsksqzx024"; depends=[assertthat copCAR ghyp Matrix mvtnorm pracma zoo]; broken = true; }; oc = derive2 { name="oc"; version="1.2"; sha256="0cw1gvz6gk8j718zmywqp03h9cnzn132nwbv45gr00xg2s9h7dk7"; depends=[pscl]; broken = true; }; - occCite = derive2 { name="occCite"; version="0.5.1"; sha256="1swarf4nwqy20ffy5ff44zq804i8gb095b7p9zay0iccfz9bn2jm"; depends=[bib2df BIEN DBI dplyr ggplot2 htmltools httr leaflet lubridate RColorBrewer rgbif rlang RPostgreSQL stringr taxize tidyr viridis waffle]; broken = true; }; - optimall = derive2 { name="optimall"; version="0.1.0"; sha256="09vcznvfcgal1cr17byw6c2kwkch6q9v32wvdxyjxrykc5y45hip"; depends=[dplyr glue magrittr rlang tibble]; broken = true; }; + optband = derive2 { name="optband"; version="0.2.1"; sha256="1rv4r7h7x3xipav917cz9bcr6nqjzbinfrqxv8mcls9gdl9ha3y9"; depends=[LambertW]; broken = true; }; + optmatch = derive2 { name="optmatch"; version="0.9-17"; sha256="1q55dchgdv05s3q6x0k8ybzmfcvzxsf893gvhs2cgijxrfgvgyv0"; depends=[digest Rcpp survey survival]; broken = true; }; + packClassic = derive2 { name="packClassic"; version="0.5.2"; sha256="04a1sg9vx3r0sq54q9kj0kpahp6my246jy3bivgy09g5fjk0dmkj"; depends=[]; broken = true; }; pairheatmap = derive2 { name="pairheatmap"; version="1.0.1"; sha256="1awmqr5n9gbqxadkblpxwcjl9hm73019bwwfwy1f006jpn050d6l"; depends=[]; broken = true; }; pairwiseComparisons = derive2 { name="pairwiseComparisons"; version="3.1.6"; sha256="0aiq8gr33pr5lia6cf6ak7zy5z81am5j5a0py0a2m9ljgmsgmn4s"; depends=[BayesFactor dplyr insight ipmisc parameters PMCMRplus purrr rlang WRS2]; broken = true; }; panelAR = derive2 { name="panelAR"; version="0.1"; sha256="1ka2rbl9gs65xh2y2m4aqwh5qj4szibjy101hqfmza9wmdh25gpq"; depends=[car]; broken = true; }; @@ -19096,37 +19303,52 @@ in with self; { pbdRPC = derive2 { name="pbdRPC"; version="0.2-1"; sha256="1pz71zfs9qw96dj3h5mrm734vbbi4drlv9hrw91dbzm3a7jsxg4q"; depends=[]; broken = true; }; pedometrics = derive2 { name="pedometrics"; version="0.7.0"; sha256="0rqldc67yrcg16i5q9wrmfmh3lw3qrfdxwdb4mxkjxx18v4fv737"; depends=[lattice latticeExtra Rcpp]; broken = true; }; permGPU = derive2 { name="permGPU"; version="0.15"; sha256="1bxydc5dw7ka45k6ban35d5xb1dw9yq9480qns8b39cc0x3acmhc"; depends=[Biobase foreach RUnit survival]; broken = true; }; + photosynthesis = derive2 { name="photosynthesis"; version="2.0.1"; sha256="0drbic4sdx841pzcqvi0gkny7qrnzixlc0wsr6m0llh7pfyl99s6"; depends=[checkmate crayon dplyr furrr future ggplot2 glue gunit magrittr minpack_lm nlme pkgnet purrr rlang stringr tealeaves tidyselect units]; broken = true; }; phreeqc = derive2 { name="phreeqc"; version="3.6.3"; sha256="0z20gj1kqhnbvx33sswz5ivj7nk2p4hia4gr2npscs94nc50b5j4"; depends=[]; broken = true; }; + physx = derive2 { name="physx"; version="1.0"; sha256="1b6bx08jzfg4pxicawkn013bqrvqkp19pigxl3iwjrqclvi8mx73"; depends=[celestial cubature data_table docore MASS pracma Rcpp]; broken = true; }; pm4py = derive2 { name="pm4py"; version="1.2.7"; sha256="11xbsmsc9pxd98fy28l3nxzhb6c2pwvh1gmm34jnqn0rjbpb2n9i"; depends=[bupaR petrinetR purrr reticulate stringr]; broken = true; }; pmdplyr = derive2 { name="pmdplyr"; version="0.3.3"; sha256="1grnqqydi84hnig1522lv4xbh9ds32wnq7sha7jn1q4186wlz1qa"; depends=[dplyr lubridate magrittr pillar rlang tibble tidyr tidyselect vctrs]; broken = true; }; + pnn = derive2 { name="pnn"; version="1.0.1"; sha256="1s6ib60sbdas4720hrsr5lsszsa474kfblqcalsb56c84gkl42ka"; depends=[]; broken = true; }; podr = derive2 { name="podr"; version="0.0.5"; sha256="135nq0dw1x6ngf6mxy3yds3xsxhaf5rnv1cmhavlrklhdfygc0a4"; depends=[assertthat DBI dplyr lubridate magrittr odbc plogr RPostgres rstudioapi shiny stringr tibble]; broken = true; }; polyPK = derive2 { name="polyPK"; version="3.1.0"; sha256="0cb83sq8iz4swr73vwhh8n4k62p6321nsy1sz5fba0wiicycxf55"; depends=[circlize corrplot gplots Hmisc impute imputeLCMD mixOmics pcaMethods pkr plyr ropls sqldf xlsx]; broken = true; }; polyglot = derive2 { name="polyglot"; version="0.3.0"; sha256="1mmmdqaq882qys41lmm009ncg9s9h5x1q8psv0v3pwpar0d7vgff"; depends=[magick pins]; broken = true; }; + pragma = derive2 { name="pragma"; version="0.1.3"; sha256="1n30a346pph4d8cj4p4qx2l6fnwhkxa8yxdisx47pix376ljpjfx"; depends=[]; broken = true; }; + predmixcor = derive2 { name="predmixcor"; version="1.1-1"; sha256="0v99as0dzn0lqnbbzycq9j885rgsa1cy4qgbya37bbjd01b3pykd"; depends=[]; broken = true; }; + prider = derive2 { name="prider"; version="1.0.2"; sha256="0a7n4b2a0p91q8llgn14czfxvi588v62x5azl7nndvjdk6g4cmmy"; depends=[blaster dplyr gplots magrittr purrr Rcpp stringr tibble tidyr]; broken = true; }; + psychometric = derive2 { name="psychometric"; version="2.2"; sha256="1b7cx6icixh8k3bv60fqxjjks23qn09vlcimqfv2x3m3nkf8p1s9"; depends=[multilevel nlme]; broken = true; }; psyosphere = derive2 { name="psyosphere"; version="0.1.6"; sha256="1hcas3jk2n11lyw1ysmci0sysxf7qg9h2msqqg7q9nqp5gbf90np"; depends=[geosphere ggplot2 Hmisc lubridate plyr rgdal RgoogleMaps sp]; broken = true; }; - qcr = derive2 { name="qcr"; version="1.3"; sha256="0jifg383qv935q9jlrlwy3y00nvjpgp2vm3qv5z0jdlr4kdw0pmm"; depends=[fda_usc MASS mvtnorm qcc]; broken = true; }; qoma_smuggler = derive2 { name="qoma.smuggler"; version="0.0.1"; sha256="03p9i0kr6i3adpb9lcszcmdr9p26nfy7f8hw2sbydazglaw4hscr"; depends=[lubridate rhli tibble]; broken = true; }; + rDotNet = derive2 { name="rDotNet"; version="0.9.1"; sha256="18cd5373pdfi1x958llb4cgjqdi1fb7h7m5nkdwcd4xw9hxhinzd"; depends=[Rcpp testthat]; broken = true; }; rGEDI = derive2 { name="rGEDI"; version="0.1.11"; sha256="0fkvy4p82jyfbbfymkfbrdyh13hk6a6wghk2myb64p5nhz8kv7iz"; depends=[bit64 curl data_table fs getPass ggplot2 hdf5r jsonlite lazyeval raster RColorBrewer rgdal rgeos sp]; broken = true; }; rKolada = derive2 { name="rKolada"; version="0.2.0"; sha256="0ikyjzg8xbzyah37dpfwq2slssz956irm4dj8b7zv6x9qxi09gj9"; depends=[dplyr glue httr jsonlite magrittr purrr rlang stringr tibble tidyr urltools]; broken = true; }; rModeling = derive2 { name="rModeling"; version="0.0.3"; sha256="0xrjxayp59f31wwcqqkzs5my2j2lpbv1f4pp709fmqxz02vbdzhv"; depends=[caret e1071 MASS]; broken = true; }; radix = derive2 { name="radix"; version="0.6"; sha256="0290n0yax8649srdjbq4439h0d9f6jsmxayyhp86igcnszcxilnb"; depends=[base64enc bookdown digest downloader htmltools jsonlite knitr lubridate mime png progress rmarkdown rprojroot rstudioapi stringr whisker xfun xml2 yaml]; broken = true; }; randaes = derive2 { name="randaes"; version="0.3"; sha256="14803argy0xdd8mpn4v67gbp90qi2is4x6na9zw7i9pm504xji1x"; depends=[]; broken = true; }; randomsearch = derive2 { name="randomsearch"; version="0.2.0"; sha256="0ywr4ms66p5nmq8bzy04gbvmpp0nhfyf8rvynhr2c4alqva9x3yi"; depends=[checkmate fs parallelMap ParamHelpers smoof]; broken = true; }; + rattle = derive2 { name="rattle"; version="5.4.0"; sha256="1cg26k491f78yqwis07djad8b3f9ndqwqylbh5sh66l2j9bdpmz5"; depends=[bitops dplyr ggplot2 magrittr rpart_plot stringi stringr tibble tidyr XML]; broken = true; }; + rattle_data = derive2 { name="rattle.data"; version="1.0.2"; sha256="0cnmyzvy23jc4vz521c3jg0w4165waycvy5014l5773fy19zq75c"; depends=[]; broken = true; }; rawr = derive2 { name="rawr"; version="0.1.3"; sha256="0k0x1pmxs73j6dmjg33n4hhwjwzpnhzbmmmjza6kw7hj6lfmipx4"; depends=[clipr dplyr jsonlite rvest stringr xml2]; broken = true; }; rbedrock = derive2 { name="rbedrock"; version="0.1.1"; sha256="0vh6pg1lg2764zjhciswznvq7ccrd71855bmdadlj6cc1gv0fphq"; depends=[bit64 digest dplyr fs magrittr purrr R6 rappdirs readr rlang stringr tibble tidyr vctrs]; broken = true; }; + rcbsubset = derive2 { name="rcbsubset"; version="1.1.6"; sha256="0ks94x34fw7rcvbccli6b0rlvdj3asfy6h4rm19nb022r9dax86f"; depends=[MASS plyr rcbalance]; broken = true; }; + rcol = derive2 { name="rcol"; version="0.2.0"; sha256="1ypn5fiwhyvfnmjs2davqqhxf5pjg7f0101v40bqrv4jz563h5n1"; depends=[crul data_table glue jsonlite tibble]; broken = true; }; rdaemon = derive2 { name="rdaemon"; version="1.0.6"; sha256="1qr6v7kgk9nd5qp96667x51331xmpp1yz1r190dgd1fqigw735s5"; depends=[base64enc futile_logger Rcpp]; broken = true; }; + rdataretriever = derive2 { name="rdataretriever"; version="3.0.0"; sha256="1a01lrzn7gcxid01r0l8nnbpbryvs07z9nf43l1143w2n9bvgn24"; depends=[reticulate semver]; broken = true; }; + rela = derive2 { name="rela"; version="4.1"; sha256="00ksm7zh1mpd2d5c5d823id3sxj0h3x0ccg6a40fadibvr1ay3ny"; depends=[]; broken = true; }; retrocombinator = derive2 { name="retrocombinator"; version="1.0.0"; sha256="0ci5cm9ml2gsn0n0scaahpfi8kyn6i0s3fb4mn7m9s83c0ls6xgv"; depends=[dplyr ggplot2 magrittr Rcpp rlang]; broken = true; }; - rgho = derive2 { name="rgho"; version="2.0.1"; sha256="1byvq2swn2j9v0zy5smjklv7bkncrclhli62cf1f2wiah5qg8sv2"; depends=[curl dplyr httr jsonlite lazyeval magrittr memoise readr rlang tibble tidyr]; broken = true; }; + rgho = derive2 { name="rgho"; version="2.0.2"; sha256="02p7xnfczbnvbm60hhfyywwg8iwsakk1gm29xsj9vq3ldxdjxbbv"; depends=[curl dplyr httr jsonlite lazyeval magrittr memoise readr rlang tibble tidyr]; broken = true; }; rijkspalette = derive2 { name="rijkspalette"; version="1.0.2"; sha256="00726q8s36si08ghd9sgi7ikadcj11xqwhgv8f3cml6lvwz7ppzz"; depends=[crayon imager jsonlite]; broken = true; }; rnetcarto = derive2 { name="rnetcarto"; version="0.2.4"; sha256="0fk5rym6zp049bl1f7bkl2231mjh3pgnxn0nhvmzpsah08rh4rr6"; depends=[]; broken = true; }; - rsat = derive2 { name="rsat"; version="0.1.16"; sha256="0d40dh596yr9qk6hyyb37w0jl73595p80sk89yyjknvj3hilsj8y"; depends=[calendR curl fields httr leafem leaflet raster Rdpack rjson rvest sf sp stars terra tmap XML xml2 zip]; broken = true; }; - rubias = derive2 { name="rubias"; version="0.3.2"; sha256="1dq7bjb3p87gvsg9b2vpd65xp8ihp68dic2w9my687mpc11fxp1v"; depends=[dplyr gtools magrittr Rcpp RcppParallel readr rlang stringr tibble tidyr]; broken = true; }; + rpsychi = derive2 { name="rpsychi"; version="0.8"; sha256="1h40kbqvvwwjkz5hrclj6j22zhav3yyfbbhqahs1whwjkksnam4w"; depends=[gtools]; broken = true; }; safedata = derive2 { name="safedata"; version="1.0.9"; sha256="0xcpgh4898rqdnnxx21vyxc8aqlwg26aywr591sllasrv1jzsmrc"; depends=[chron curl igraph jsonlite readxl sf]; broken = true; }; - sara4r = derive2 { name="sara4r"; version="0.0.8"; sha256="0b8ir25f0348pd2ckwzv1pyz3iz98zy09baih3rkgxxn8hjdnxj7"; depends=[raster rgdal RGtk2 sp]; broken = true; }; + salbm = derive2 { name="salbm"; version="1.0"; sha256="06nizpphyn5q292b2kbsjax0ljw3340n655qwiyp8lvi2zcnl6jy"; depends=[randomForestSRC]; broken = true; }; + salem = derive2 { name="salem"; version="0.2.0"; sha256="1pk27d57bmds0jvnvwai2scjy798lb7w6lb84yxl4ccgyn1ldh45"; depends=[]; broken = true; }; + sapa = derive2 { name="sapa"; version="2.0-3"; sha256="0kj681rd4c2lvqr926lb6f4qwp281x5274dg6vbk8pf5y7s0qlpc"; depends=[ifultools splus2R]; broken = true; }; + scriptests = derive2 { name="scriptests"; version="1.0-16"; sha256="11l145gvzkxqwbzw976rq94krly1p4lahqw051dwaacarq4hnrdg"; depends=[]; broken = true; }; seedwater = derive2 { name="seedwater"; version="2.0"; sha256="1q6q612245hqqx89jzlp77f73vj2baxi0bghd9l8kpjz4ydh6rv8"; depends=[rpanel]; broken = true; }; sensR = derive2 { name="sensR"; version="1.5-2"; sha256="073za0z6dawba2nd45hs20m0143kckxn3iglkyqz9vdfqwyv7wlq"; depends=[MASS multcomp numDeriv]; broken = true; }; sequoia = derive2 { name="sequoia"; version="2.3.5"; sha256="1n0c24g5zl0l63nsaywwjfqsjn0ql2ckd3iqmc381qngijnckc17"; depends=[plyr]; broken = true; }; shinyypr = derive2 { name="shinyypr"; version="0.0.2"; sha256="1k6jsw6gnpwk90hkpa9grki0b68cab57vbd0h6ldjqr11giwcz8z"; depends=[bsplus chk dplyr DT ggplot2 lifecycle magrittr purrr readr shiny shinyjs waiter ypr]; broken = true; }; - shrink = derive2 { name="shrink"; version="1.2.1"; sha256="0pd967wsys8fd7gyvr9y08km118yamfk5c1a1i2k8nr2ifpqmy0w"; depends=[MASS mfp rms survival]; broken = true; }; + sigQC = derive2 { name="sigQC"; version="0.1.22"; sha256="17b16mjadmsbqbai90bvryydkfy9k5ww9i65a5ahy3bfjch851f2"; depends=[biclust circlize class cluster ComplexHeatmap fmsb gplots gridGraphics GSVA KernSmooth lattice MASS mclust moments nnet RankProd]; broken = true; }; simLife = derive2 { name="simLife"; version="0.5.2"; sha256="1dhrjszfgxr0j4dkc2bwykyj515ji5rkb572nmnyjgkyi652j01v"; depends=[splancs]; broken = true; }; simba = derive2 { name="simba"; version="0.3-5"; sha256="14kqxqavacckl5s1518iiwzrmlgbxz1lxy33y8c9qq7xaln41g9h"; depends=[vegan]; broken = true; }; simfinR = derive2 { name="simfinR"; version="0.2.3"; sha256="1swlgwmd5frz72i3vjv7am8s6vr6i7mv76j7hxffk3l7xmq7y53s"; depends=[crayon digest dplyr jsonlite lubridate magrittr memoise purrr]; broken = true; }; @@ -19134,35 +19356,51 @@ in with self; { smartR = derive2 { name="smartR"; version="0.62.3"; sha256="0ardb4arhr7qmr30b3ahf7hkwlys9i420bm8h2688phahgfkk0y8"; depends=[caret chron cluster foreign ggplot2 ggrepel ggthemes gridExtra gstat gsubfn gWidgets2 gWidgets2RGtk2 igraph jpeg jsonlite lattice mapdata mapproj maps maptools marmap mtsdi nnls PBSmapping plyr R6 RColorBrewer reshape2 rgdal rgeos rjags ROCR rpart scales shape sp spdep sqldf vegan]; broken = true; }; sobir = derive2 { name="sobir"; version="0.1.2"; sha256="0di9mk1c1jf8yr7jpmfm19w2w3p9lz1mkgrv3bmfyab83aghvbfp"; depends=[DescTools devtools dplyr ggplot2 raster rlang scales sp statmod stringr tidyr usethis]; broken = true; }; spANOVA = derive2 { name="spANOVA"; version="0.99.3"; sha256="0w817zwbk6amh3n3j8wzjr15qqhfbk9s23c77b27iwcc5akdgbix"; depends=[ape car DT geoR gtools knitr MASS Matrix multcomp multcompView mvtnorm rmarkdown ScottKnott shiny shinyBS shinycssloaders shinythemes spatialreg spdep xtable]; broken = true; }; + spagmix = derive2 { name="spagmix"; version="0.3-4"; sha256="032dmz8cx4j5vl229gi1xkncc1wggfrf1a24qqwl2bzxrdfp27rw"; depends=[abind mvtnorm RandomFields sparr spatstat spatstat_core spatstat_geom spatstat_linnet]; broken = true; }; spate = derive2 { name="spate"; version="1.7"; sha256="1cr5jjrycfj9larsqgzfakk4qgfz8m5djg4ddzk6s3lg2iw06y43"; depends=[mvtnorm truncnorm]; broken = true; }; + spe = derive2 { name="spe"; version="1.1.2"; sha256="0xyx42n3gcsgqmy80nc9la6p6gq07anpzx0afwffyx9fv20fvys0"; depends=[]; broken = true; }; spfrontier = derive2 { name="spfrontier"; version="0.2.5"; sha256="1vnvwcjbhvbmyn5rp4760amzy8k3y156q629fjymw9rw6zy45pbf"; depends=[ezsim moments mvtnorm numDeriv optimx spdep tmvtnorm]; broken = true; }; spiders = derive2 { name="spiders"; version="1.2"; sha256="1qklm178bgkgpvrjf024jphsdh9can8300sf0702l4h0rk2daqbq"; depends=[plyr]; broken = true; }; spsann = derive2 { name="spsann"; version="2.2.0"; sha256="00nlrwk50ch128brzvfxld0pcpq1syks9rvwdrcf1i2pcxnva7d0"; depends=[pedometrics Rcpp sp SpatialTools]; broken = true; }; sqp = derive2 { name="sqp"; version="0.5"; sha256="0l01zwcryv5bmzmd98gj0m5ip8nvr8lziq1awvfif1bzwvvd2kzx"; depends=[Matrix Rcpp RcppArmadillo RcppEigen Rdpack]; broken = true; }; stacomiR = derive2 { name="stacomiR"; version="0.6.0"; sha256="0mcq7lcwcz9s18vdd7762dfr2fyb5fqvnv0b5ljp7kdbr3ia977y"; depends=[dplyr ggplot2 Hmisc intervals lattice lubridate magrittr mgcv pool RColorBrewer reshape2 rlang RPostgres stacomirtools stringr withr xtable]; broken = true; }; + stam = derive2 { name="stam"; version="0.0-1"; sha256="1x1j45fir64kffny0nssb2hwn4rcp8gd2cjv6fw4yy0l4d0xi5iv"; depends=[np sp]; broken = true; }; stanette = derive2 { name="stanette"; version="2.21.2"; sha256="1266555964cymrgrmfzjk2x12hpyjvd18c8q0lx92wdssnqzhhzr"; depends=[BH brew coda ggplot2 gridExtra inline lattice loo pkgbuild Rcpp RcppEigen RcppParallel StanHeaders V8 withr]; broken = true; }; + stpp = derive2 { name="stpp"; version="2.0-5"; sha256="1p7dxzfhi5pvva956nyypl7dfdgq3m0cara73hai87qzc342xcf0"; depends=[ggplot2 gridExtra KernSmooth plot3D rgl rpanel spatstat_core spatstat_geom splancs]; broken = true; }; + subscreen = derive2 { name="subscreen"; version="3.0.5"; sha256="0786p2n1a4xjsxnd31w2b079ggdzx9pgn14d5vbngrc6mgjm9hk8"; depends=[bsplus colourpicker data_table dplyr DT jsonlite plyr purrr randomForestSRC shiny shinyjs shinyWidgets]; broken = true; }; subtee = derive2 { name="subtee"; version="1.0.0"; sha256="09ah1n3whdycygbi1a6pwgm5jqs1srd565p3ihkk5ygp4gl2r3z9"; depends=[ggplot2 MASS matrixStats survival]; broken = true; }; survRatio = derive2 { name="survRatio"; version="0.1"; sha256="1xrqin3q3b7r8ga4i71ci97rsm4lj5ffd0720n7s563jkpnpyb9l"; depends=[ggplot2 ggpubr gridExtra survival]; broken = true; }; + survxai = derive2 { name="survxai"; version="0.2.2"; sha256="09ig561754kjzpay2hy3n62zlk0bgwkjy8vnslrr428r8m1lj0qr"; depends=[breakDown ggplot2 pec prodlim scales survival survminer]; broken = true; }; swissdd = derive2 { name="swissdd"; version="1.1.4"; sha256="0ad260b4sfism5q1jxjazg6q33283ncld1m7gfdrps3xg1kyfirs"; depends=[dplyr ggplot2 httr jsonlite lubridate purrr RCurl sf stringr tibble tidyr]; broken = true; }; tabulizer = derive2 { name="tabulizer"; version="0.2.2"; sha256="0zd5cfqwgirqchw1mvziscxvzl8pb1y6rbfywkn9i9pxfydkm5vi"; depends=[png rJava tabulizerjars]; broken = true; }; tabulizerjars = derive2 { name="tabulizerjars"; version="1.0.1"; sha256="005n2gyzzmq8h0mpj8xs6ri6llzwag7nqzpm4vnzp81vwy8kmf92"; depends=[rJava]; broken = true; }; test2norm = derive2 { name="test2norm"; version="0.2.0"; sha256="02dmskqnxinfdxxq5s969p37fps0wpiz6mrcnx03f03a3gzqljl0"; depends=[mfp]; broken = true; }; thectar = derive2 { name="thectar"; version="1.0.0"; sha256="1qh0qzg0ybb38kzm56xxlvhm201pdjm16aky5f1fdflcsszgy8mx"; depends=[proxy smacof]; broken = true; }; themetagenomics = derive2 { name="themetagenomics"; version="1.0.2"; sha256="14i81cd9cyzhi3j2d9ygwlairkimhx8ffvva3pg3xwwvpywb6mla"; depends=[ggplot2 lda lme4 Matrix plotly Rcpp rstan scales shiny stm]; broken = true; }; - tidySEM = derive2 { name="tidySEM"; version="0.2.0"; sha256="115nr2h3bz9pjxf5c1cw3b2v16nix5z41r49zjqzn8yrfjs59crw"; depends=[ggplot2 gtable igraph lavaan MplusAutomation OpenMx psych]; broken = true; }; + thickmatch = derive2 { name="thickmatch"; version="0.3.1"; sha256="0q7wpilbk8jm3q7m5hb114jpbv4ri1745v9sbdf222l6ymds6pia"; depends=[DiPs MASS plyr rcbalance]; broken = true; }; + tidyMicro = derive2 { name="tidyMicro"; version="1.47"; sha256="02pc6rh0l7xdrqhihi53zp17x0walc0mpm70spm7yrwzkbc486lv"; depends=[ade4 broom car cowplot dplyr Evomorph factoextra ggplot2 ggrepel gridExtra latex2exp lme4 lsr magrittr MASS Matrix plotly plyr png purrr rlang scales scatterplot3d shapes stringr ThreeWay tibble tidyr tidyverse vegan VGAM]; broken = true; }; + tipom = derive2 { name="tipom"; version="1.0.2-1"; sha256="1gdfv0g5dw742j6ycmi0baqh6xcchp3yf2n1g8vn7jmqgz5mlhdr"; depends=[]; broken = true; }; tlsh = derive2 { name="tlsh"; version="0.1.0"; sha256="0106y17cr3hq09ahy3rxhxqzgc0655w2jr0s3iyr8zvxsdv5ahb5"; depends=[bit64 blink igraph plyr]; broken = true; }; - trajeR = derive2 { name="trajeR"; version="0.9.0.3"; sha256="08r7201ccqg1p7qpjxfc310814sjhqrj7gf07vzz0xkmyigbjzr9"; depends=[capushe MASS minpack_lm numDeriv Rcpp RcppArmadillo ucminf]; broken = true; }; + translate = derive2 { name="translate"; version="0.1.2"; sha256="1w0xrg1xxwfdanlammmixf06hwq700ssbjlc3cfigl50p87dbc5x"; depends=[functional lisp RCurl RJSONIO]; broken = true; }; turfR = derive2 { name="turfR"; version="0.8-7"; sha256="007jmkppfv1x4zzvvd65fhg5k15ybjhsya2zfjgwm77wm34y81ca"; depends=[dplyr]; broken = true; }; uFTIR = derive2 { name="uFTIR"; version="0.1.4"; sha256="1blgwn6i0dadmr7vml6rbniv103mgr9hgx2dwgcxbagfyv00ah24"; depends=[raster Rcpp RcppArmadillo sp]; broken = true; }; unfoldr = derive2 { name="unfoldr"; version="0.7.1"; sha256="1khas7d04g4y2kwldnsja5xk1n5mys2s66pln3l0gqlsbk67na12"; depends=[]; broken = true; }; + uplift = derive2 { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[coin MASS penalized RItools tables]; broken = true; }; uplifteval = derive2 { name="uplifteval"; version="0.1.0"; sha256="1gnn40c47rpx40j210bz6fb48d70p6spv3drr8hd5b3vzfz6686c"; depends=[dplyr ggplot2 gridExtra whisker]; broken = true; }; usethis2 = derive2 { name="usethis2"; version="0.2.0"; sha256="0ljvfgwg73y71yvyz2pp4c1rzgiqk1x7kmgswxa1ay05zwdgyi0x"; depends=[microservices purrr usethis withr]; broken = true; }; valuer = derive2 { name="valuer"; version="1.1.2"; sha256="0mbwzsvy34ppngyxdzpd9w1r4f00cik4maqab9kpiflrrv9xdp78"; depends=[ggplot2 orthopolynom R6 Rcpp RcppEigen timeDate yuima]; broken = true; }; viewshed3d = derive2 { name="viewshed3d"; version="4.0.0"; sha256="039xx39w3k3hckf0qci7j1364s47vja5s18siqjh6c5yy1w8q737"; depends=[data_table hyper_fit lidR nabor pkgcond plotrix pracma raster rgl sp viridis]; broken = true; }; + viopoints = derive2 { name="viopoints"; version="0.2-1"; sha256="0cpbkkzm1rxch8gnvlmmzy8g521f5ang3nhlcnin419gha0w6avf"; depends=[]; broken = true; }; vmsbase = derive2 { name="vmsbase"; version="2.2.1"; sha256="1xxn0vm9r8kiix6whlc12r0wanf6acrl9a86h44nwm019xfmlfyp"; depends=[AMORE cairoDevice chron cluster DBI ecodist fields foreign ggmap ggplot2 gmt gsubfn gWidgets2 gWidgets2RGtk2 intervals mapdata maps maptools marmap outliers PBSmapping plotrix R6 RSQLite sp sqldf VennDiagram]; broken = true; }; + vwr = derive2 { name="vwr"; version="0.3.0"; sha256="1h790vjcdfngs1siwldvqz8jrxpkajl3266lzadfnmchfan1x7xv"; depends=[lattice latticeExtra stringdist]; broken = true; }; + wSVM = derive2 { name="wSVM"; version="0.1-7"; sha256="0c7rblzgagwfb8mmddkc0nd0f9rv6kapw8znpwapv3fv0j2qzq7h"; depends=[MASS quadprog]; broken = true; }; water = derive2 { name="water"; version="0.8"; sha256="0qglf922dlgi41jzz3sivq7ckmzl8axqjfg4klcgnddycmm3ha5j"; depends=[raster rgdal sp]; broken = true; }; + wdnr_gis = derive2 { name="wdnr.gis"; version="0.1.2"; sha256="03z9qayrv34lgajvwg77b0h7z65r04wzlkaazpdfxq9wk027g3a9"; depends=[arcpullr dplyr ggplot2 httr jsonlite rlang sf]; broken = true; }; weathercan = derive2 { name="weathercan"; version="0.6.2"; sha256="1mr926rymacx1f8k79pwhcyl5xcymq77l4dxaa2ddlrx5cmyh5cv"; depends=[dplyr httr lubridate memoise purrr rappdirs readr rlang rvest stringi stringr tidyr tidyselect xml2]; broken = true; }; wflo = derive2 { name="wflo"; version="1.6"; sha256="04qxm1vvmgxbpj1wwj7n48klhsprkj774jnj4qfhqza33mhymydb"; depends=[emstreeR plotrix progress raster rgdal sp]; broken = true; }; + windAC = derive2 { name="windAC"; version="1.2.6"; sha256="0yx0jiz3c4slv366sic01k8l460idh4n6a797biy7wyrp6jj241x"; depends=[mvtnorm sf]; broken = true; }; x12GUI = derive2 { name="x12GUI"; version="0.13.0"; sha256="1mga7g9gwb3nv2qs27lz4n9rp6j3svads28hql88sxaif6is3nk1"; depends=[cairoDevice Hmisc lattice RGtk2 stringr x12]; broken = true; }; + xgobi = derive2 { name="xgobi"; version="1.2-15"; sha256="03ym5mm16rb1bdwrymr393r3xgprp0ign45ryym3g0x2zi8dy557"; depends=[]; broken = true; }; xlsimple = derive2 { name="xlsimple"; version="1.0.5"; sha256="1snamzq6yljiqakqd6492ylznr9kfl8w0lnaayfn14fk3w03skck"; depends=[XLConnect]; broken = true; }; + zGPS_AO = derive2 { name="zGPS.AO"; version="0.1.0"; sha256="18dqssnj4gch1yg0qvrj4j2ry95sy6a9z8yz2zi8nzhhsj8dz1qq"; depends=[doParallel doRNG dplyr foreach ggplot2 hrbrthemes MASS plotly pscl questionr viridis]; broken = true; }; } diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix index e2f0c53f110..ffe27758239 100644 --- a/pkgs/development/r-modules/default.nix +++ b/pkgs/development/r-modules/default.nix @@ -323,7 +323,7 @@ let cairoDevice = [ pkgs.gtk2.dev ]; Cairo = with pkgs; [ libtiff libjpeg cairo.dev xlibsWrapper fontconfig.lib ]; Cardinal = [ pkgs.which ]; - chebpol = [ pkgs.fftw ]; + chebpol = [ pkgs.fftw.dev ]; ChemmineOB = with pkgs; [ openbabel pkg-config ]; curl = [ pkgs.curl.dev ]; data_table = [ pkgs.zlib.dev ] ++ lib.optional stdenv.isDarwin pkgs.llvmPackages.openmp; @@ -493,6 +493,7 @@ let HilbertVisGUI = with pkgs; [ pkg-config which ]; textshaping = [ pkgs.pkg-config ]; ragg = [ pkgs.pkg-config ]; + qqconf = [ pkgs.pkg-config ]; }; packagesWithBuildInputs = { @@ -649,6 +650,7 @@ let DropletUtils = [ pkgs.zlib.dev ]; RMariaDB = [ pkgs.libmysqlclient.dev ]; ragg = with pkgs; [ freetype.dev libpng.dev libtiff.dev zlib.dev libjpeg.dev bzip2.dev ]; + qqconf = [ pkgs.fftw.dev ]; }; packagesRequiringX = [ @@ -1297,6 +1299,10 @@ let geomorph = old.geomorph.overrideDerivation (attrs: { RGL_USE_NULL = "true"; }); + + RNifti = old.RNifti.overrideDerivation (attrs: { + patches = [ ./patches/RNifti.patch ]; + }); }; in self diff --git a/pkgs/development/r-modules/patches/RNifti.patch b/pkgs/development/r-modules/patches/RNifti.patch new file mode 100644 index 00000000000..e8f3561e750 --- /dev/null +++ b/pkgs/development/r-modules/patches/RNifti.patch @@ -0,0 +1,33 @@ +diff --git a/configure.ac b/configure.ac +index 05e8a1e..2dcde81 100644 +--- a/configure.ac ++++ b/configure.ac +@@ -17,16 +17,5 @@ CXXFLAGS=`"${R_HOME}/bin/R" CMD config CXXFLAGS` + CPPFLAGS=`"${R_HOME}/bin/R" CMD config CPPFLAGS` + LDFLAGS=`"${R_HOME}/bin/R" CMD config LDFLAGS` + +-# Checks for libraries. +-ZLIB_FLAGS="-Izlib" +-ZLIB_OBJECTS=`ls -1 src/zlib/*.c | sed 's/^src\///' | sed 's/\\.c$/\\.o/'` +-AC_SEARCH_LIBS([inflate], [z], [ +- ZLIB_FLAGS="" +- ZLIB_OBJECTS="" +-]) +- +-AC_SUBST(ZLIB_FLAGS) +-AC_SUBST(ZLIB_OBJECTS) +- + AC_CONFIG_FILES([src/Makevars]) + AC_OUTPUT +diff --git a/src/Makevars.in b/src/Makevars.in +index 77da572..358cc1d 100644 +--- a/src/Makevars.in ++++ b/src/Makevars.in +@@ -1,5 +1,5 @@ +-PKG_CPPFLAGS = -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include @ZLIB_FLAGS@ ++PKG_CPPFLAGS = -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include + PKG_LIBS = @LIBS@ + + NIFTI_OBJECTS = znzlib/znzlib.o niftilib/nifti1_io.o niftilib/nifti2_io.o +-OBJECTS = main.o zzz.o @ZLIB_OBJECTS@ $(NIFTI_OBJECTS) ++OBJECTS = main.o zzz.o $(NIFTI_OBJECTS) diff --git a/pkgs/development/ruby-modules/gem-config/default.nix b/pkgs/development/ruby-modules/gem-config/default.nix index a3d787ad8e9..485def66de3 100644 --- a/pkgs/development/ruby-modules/gem-config/default.nix +++ b/pkgs/development/ruby-modules/gem-config/default.nix @@ -550,14 +550,6 @@ in "--with-libvirt-include=${libvirt}/include" "--with-libvirt-lib=${libvirt}/lib" ]; - dontBuild = false; - postPatch = '' - # https://gitlab.com/libvirt/libvirt-ruby/-/commit/43543991832c9623c00395092bcfb9e178243ba4 - substituteInPlace ext/libvirt/common.c \ - --replace 'st.h' 'ruby/st.h' - substituteInPlace ext/libvirt/domain.c \ - --replace 'st.h' 'ruby/st.h' - ''; }; ruby-lxc = attrs: { diff --git a/pkgs/development/tools/analysis/checkov/default.nix b/pkgs/development/tools/analysis/checkov/default.nix index 58fed0070d0..a025abf1e34 100644 --- a/pkgs/development/tools/analysis/checkov/default.nix +++ b/pkgs/development/tools/analysis/checkov/default.nix @@ -32,13 +32,13 @@ with py.pkgs; buildPythonApplication rec { pname = "checkov"; - version = "2.0.954"; + version = "2.0.975"; src = fetchFromGitHub { owner = "bridgecrewio"; repo = pname; rev = version; - hash = "sha256-gCUciYTEL+4Pt9vAGbun0WFQWneOhDDXh7Dn9+sZbWw="; + hash = "sha256-vzq6HKugjM9LBaklv0IlMauSAl3bqHOikDCzrhVBVPA="; }; nativeBuildInputs = with py.pkgs; [ @@ -53,6 +53,7 @@ buildPythonApplication rec { bc-python-hcl2 boto3 cachetools + charset-normalizer cloudsplaining colorama configargparse diff --git a/pkgs/development/tools/analysis/flow/default.nix b/pkgs/development/tools/analysis/flow/default.nix index 6ef9806bf37..2d97b64b11e 100644 --- a/pkgs/development/tools/analysis/flow/default.nix +++ b/pkgs/development/tools/analysis/flow/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "flow"; - version = "0.173.0"; + version = "0.174.1"; src = fetchFromGitHub { owner = "facebook"; repo = "flow"; rev = "v${version}"; - sha256 = "sha256-F0t85/sq9p+eNEf2XAGxw+ZWeRgUbkhrKFdGASijuAs="; + sha256 = "sha256-lfj6KyB9QYvUy4Ybo8f30omAg4K/jT5MEERJPm0aJ7U="; }; installPhase = '' diff --git a/pkgs/development/tools/analysis/rizin/default.nix b/pkgs/development/tools/analysis/rizin/default.nix index c4cdf85a7d8..9b15cdd148d 100644 --- a/pkgs/development/tools/analysis/rizin/default.nix +++ b/pkgs/development/tools/analysis/rizin/default.nix @@ -43,7 +43,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ pkg-config meson ninja cmake (python3.withPackages (ps: [ ps.setuptools ])) ]; - # meson's find_library seems to not use our compiler wrapper if static paraemter + # meson's find_library seems to not use our compiler wrapper if static parameter # is either true/false... We work around by also providing LIBRARY_PATH preConfigure = '' LIBRARY_PATH="" diff --git a/pkgs/development/tools/build-managers/bazel/bazel-remote/default.nix b/pkgs/development/tools/build-managers/bazel/bazel-remote/default.nix index 44e8b9e4414..a133526514f 100644 --- a/pkgs/development/tools/build-managers/bazel/bazel-remote/default.nix +++ b/pkgs/development/tools/build-managers/bazel/bazel-remote/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "bazel-remote"; - version = "2.3.4"; + version = "2.3.6"; src = fetchFromGitHub { owner = "buchgr"; repo = pname; rev = "v${version}"; - sha256 = "sha256-ijR3RjGzm0HtVp5lSKGJemCGkRzhgQqaDOgg+MjDB1c="; + sha256 = "sha256-geb7uHCBvhmqyaDr8wK9sQUcHT3xVgSclovFDpHhIiw="; }; - vendorSha256 = "sha256-NmTdS5xgv0o7AT4lBJk472Lq1e73EcrcfnI8RIxKEoc="; + vendorSha256 = "sha256-wXgW7HigMIeUZAcZpm5TH9thfCHmpz+M42toWHgwIYo="; doCheck = false; diff --git a/pkgs/development/tools/build-managers/mill/default.nix b/pkgs/development/tools/build-managers/mill/default.nix index 6e79bee6a24..21209638c85 100644 --- a/pkgs/development/tools/build-managers/mill/default.nix +++ b/pkgs/development/tools/build-managers/mill/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "mill"; - version = "0.10.1"; + version = "0.10.2"; src = fetchurl { url = "https://github.com/com-lihaoyi/mill/releases/download/${version}/${version}-assembly"; - hash = "sha256:hYQOmnJjsOIIri5H0/B5LhixwfiLxxpVoN4ON1NUkWg="; + hash = "sha256-lx5saJdGsMS7DLaUngoauzFS1UG4QYvrELEvTjIa1oQ="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/development/tools/cask/default.nix b/pkgs/development/tools/cask/default.nix index f9e7d215f32..2eadc6b877f 100644 --- a/pkgs/development/tools/cask/default.nix +++ b/pkgs/development/tools/cask/default.nix @@ -20,20 +20,22 @@ stdenv.mkDerivation rec { buildPhase = '' runHook preBuild + emacs --batch -L . -f batch-byte-compile cask.el cask-cli.el + runHook postBuild ''; installPhase = '' runHook preInstall + mkdir -p $out/bin - mkdir -p $out/templates - mkdir -p $out/share/emacs/site-lisp/cask/bin - install -Dm644 *.el *.elc $out/share/emacs/site-lisp/cask - install -Dm755 bin/cask $out/share/emacs/site-lisp/cask/bin - install -Dm644 templates/* $out/templates/ + dir=$out/share/emacs/site-lisp/cask + install -Dm444 -t $dir *.el *.elc + install -Dm555 -t $dir/bin bin/cask touch $out/.no-upgrade - ln -s $out/share/emacs/site-lisp/cask/bin/cask $out/bin/cask + ln -s $dir/bin/cask $out/bin/cask + runHook postInstall ''; @@ -48,7 +50,7 @@ stdenv.mkDerivation rec { homepage = "https://cask.readthedocs.io/en/latest/index.html"; license = licenses.gpl3Plus; + maintainers = with maintainers; [ flexw ]; platforms = platforms.all; - maintainers = [ maintainers.flexw ]; }; } diff --git a/pkgs/development/tools/circup/default.nix b/pkgs/development/tools/circup/default.nix index b620fa20e46..71ac08d2676 100644 --- a/pkgs/development/tools/circup/default.nix +++ b/pkgs/development/tools/circup/default.nix @@ -40,7 +40,7 @@ python3.pkgs.buildPythonApplication rec { ''; pythonImportsCheck = [ - " circup " + "circup" ]; meta = with lib; { diff --git a/pkgs/development/tools/cloud-nuke/default.nix b/pkgs/development/tools/cloud-nuke/default.nix index f1f44a57775..719e13a5e12 100644 --- a/pkgs/development/tools/cloud-nuke/default.nix +++ b/pkgs/development/tools/cloud-nuke/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "cloud-nuke"; - version = "0.11.0"; + version = "0.11.3"; src = fetchFromGitHub { owner = "gruntwork-io"; repo = pname; rev = "v${version}"; - sha256 = "sha256-G1RQEKb3vK8lg0jakCtIMgQXmWqfsq0QWHwU8TAbBbE="; + sha256 = "sha256-iMPTRPsULrwXbx1xQ9db1s0p9a6YejXkwp7sqZ1ayYU="; }; vendorSha256 = "sha256-McCbogZvgm9pnVjay9O2CxAh+653JnDMcU4CHD0PTPI="; diff --git a/pkgs/development/tools/continuous-integration/github-runner/default.nix b/pkgs/development/tools/continuous-integration/github-runner/default.nix index 222ffb0688f..c8513d004af 100644 --- a/pkgs/development/tools/continuous-integration/github-runner/default.nix +++ b/pkgs/development/tools/continuous-integration/github-runner/default.nix @@ -43,13 +43,13 @@ let in stdenv.mkDerivation rec { pname = "github-runner"; - version = "2.288.1"; + version = "2.289.1"; src = fetchFromGitHub { owner = "actions"; repo = "runner"; rev = "v${version}"; - hash = "sha256-bP+6aAKnu6PxN9eppFXsqOSVSGQ6Lv+gEF2MdEz52WE="; + hash = "sha256-5TS/tW1hnDvPZQdR659rw+spLq98niyUms3BrixaKRE="; }; nativeBuildInputs = [ diff --git a/pkgs/development/tools/continuous-integration/github-runner/deps.nix b/pkgs/development/tools/continuous-integration/github-runner/deps.nix index 1281b9515f5..0db94420732 100644 --- a/pkgs/development/tools/continuous-integration/github-runner/deps.nix +++ b/pkgs/development/tools/continuous-integration/github-runner/deps.nix @@ -1,15 +1,16 @@ { fetchNuGet }: [ (fetchNuGet { pname = "Castle.Core"; version = "4.4.0"; sha256 = "0rpcbmyhckvlvp6vbzpj03c1gqz56ixc6f15vgmxmyf1g40c24pf"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-arm64"; version = "6.0.0"; sha256 = "1315hycfqlalh6k4zvvz7pz3dylpp0sr45j1v9avcb143hjqnav6"; }) - (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-x64"; version = "6.0.0"; sha256 = "0r6jyxl3h1asj30la78skd5gsxgwjpvkspmkw1gglxfg85hnqc8w"; }) (fetchNuGet { pname = "Microsoft.AspNet.WebApi.Client"; version = "5.2.4"; sha256 = "00fkczf69z2rwarcd8kjjdp47517a0ca6lggn72qbilsp03a5scj"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-arm64"; version = "6.0.3"; sha256 = "1jpw4s862j4aa7b7wchi03gxcy02j6hhpbsfbcayiyx6ry788i15"; }) + (fetchNuGet { pname = "Microsoft.AspNetCore.App.Runtime.linux-x64"; version = "6.0.3"; sha256 = "0rrrfgkr7rzhlnsnajvzb1ijkybp99d992bqxy9pbawmq7d60bdk"; }) (fetchNuGet { pname = "Microsoft.CodeCoverage"; version = "17.0.0"; sha256 = "18gdbsqf6i79ld4ikqr4jhx9ndsggm865b5xj1xmnmgg12ydp19a"; }) (fetchNuGet { pname = "Microsoft.CSharp"; version = "4.0.1"; sha256 = "0zxc0apx1gcx361jlq8smc9pfdgmyjh6hpka8dypc9w23nlsh6yj"; }) (fetchNuGet { pname = "Microsoft.IdentityModel.Logging"; version = "5.2.1"; sha256 = "1gpka9jm2gl6f07pcwzwvaxw9xq1a19i9fskn0qs921c5grhlp3g"; }) (fetchNuGet { pname = "Microsoft.IdentityModel.Tokens"; version = "5.2.1"; sha256 = "03v6145vr1winq8xxfikydicds4f10qmy1ybyz2gfimnzzx51w00"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-arm64"; version = "6.0.0"; sha256 = "0aska6s99rfg13ngsaxr151a6sk8r68lv3mj8yv0bhvwcpln4342"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-arm64"; version = "6.0.0"; sha256 = "146rbmk0svvqaf0c4msg67h17x4k4gd5kzsbb3iqvs14xfkli2xw"; }) - (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-x64"; version = "6.0.0"; sha256 = "0qaylw18flrfl3vxnbp8wsiz29znidmn6dhv7k4v4jj2za16wmji"; }) + (fetchNuGet { pname = "Microsoft.NET.Test.Sdk"; version = "17.0.0"; sha256 = "0bknyf5kig5icwjxls7pcn51x2b2qf91dz9qv67fl70v6cczaz2r"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Host.linux-arm64"; version = "6.0.3"; sha256 = "1swbrmpsayy99ycwaq68dx9ydd5h3qv9brwig6ryff1xfn1llndq"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-arm64"; version = "6.0.3"; sha256 = "0gjj6p2nnxzhyrmmmwiyrll782famhll9lbgj8cji1i93amxq1pb"; }) + (fetchNuGet { pname = "Microsoft.NETCore.App.Runtime.linux-x64"; version = "6.0.3"; sha256 = "0f04srx6q0jk81a60n956hz32fdngzp0xmdb2x7gyl77gsq8yijj"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.0.1"; sha256 = "01al6cfxp68dscl15z7rxfw9zvhm64dncsw09a1vmdkacsa2v6lr"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.0.1-rc2-24027"; sha256 = "1a0w5fv8slfr4q7m3mh78lb9awdwyz4zv3bb73vybkyq1f6z7lx8"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.1.0"; sha256 = "08vh1r12g6ykjygq5d3vq09zylgb84l63k49jc4v8faw9g93iqqm"; }) @@ -21,7 +22,6 @@ (fetchNuGet { pname = "Microsoft.NETCore.Targets"; version = "1.0.1-rc2-24027"; sha256 = "1j1458jska7540ng7fdf5i06k2vy71mxl5dld4x5s8gfndxpdzdj"; }) (fetchNuGet { pname = "Microsoft.NETCore.Targets"; version = "1.1.0"; sha256 = "193xwf33fbm0ni3idxzbr5fdq3i2dlfgihsac9jj7whj0gd902nh"; }) (fetchNuGet { pname = "Microsoft.NETCore.Windows.ApiSets"; version = "1.0.1-rc2-24027"; sha256 = "034m9p417iq3yzipg393wp4bddsh80di9iad78vvvh7w5difdv0x"; }) - (fetchNuGet { pname = "Microsoft.NET.Test.Sdk"; version = "17.0.0"; sha256 = "0bknyf5kig5icwjxls7pcn51x2b2qf91dz9qv67fl70v6cczaz2r"; }) (fetchNuGet { pname = "Microsoft.TestPlatform.ObjectModel"; version = "17.0.0"; sha256 = "1bh5scbvl6ndldqv20sl34h4y257irm9ziv2wyfc3hka6912fhn7"; }) (fetchNuGet { pname = "Microsoft.TestPlatform.TestHost"; version = "17.0.0"; sha256 = "06mn31cgpp7d8lwdyjanh89prc66j37dchn74vrd9s588rq0y70r"; }) (fetchNuGet { pname = "Microsoft.Win32.Primitives"; version = "4.0.1-rc2-24027"; sha256 = "1rvb076s4ksvmbvnxi4sv2f9f22izqp2rca0scjqya5x1qhcgkp0"; }) @@ -84,8 +84,8 @@ (fetchNuGet { pname = "System.AppContext"; version = "4.3.0"; sha256 = "1649qvy3dar900z3g817h17nl8jp4ka5vcfmsr05kh0fshn7j3ya"; }) (fetchNuGet { pname = "System.Buffers"; version = "4.0.0-rc2-24027"; sha256 = "1mqnay87pkxih73984jf5fm14d0m6yjq4cv4cqbj37nmgm54ssjp"; }) (fetchNuGet { pname = "System.Buffers"; version = "4.3.0"; sha256 = "0fgns20ispwrfqll4q1zc1waqcmylb3zc50ys9x8zlwxh9pmd9jy"; }) - (fetchNuGet { pname = "System.Collections"; version = "4.0.11-rc2-24027"; sha256 = "0ijpgf7iy3mcvr9327craxsb0lsznprajqzjy59sspc75gk0yahq"; }) (fetchNuGet { pname = "System.Collections"; version = "4.0.11"; sha256 = "1ga40f5lrwldiyw6vy67d0sg7jd7ww6kgwbksm19wrvq9hr0bsm6"; }) + (fetchNuGet { pname = "System.Collections"; version = "4.0.11-rc2-24027"; sha256 = "0ijpgf7iy3mcvr9327craxsb0lsznprajqzjy59sspc75gk0yahq"; }) (fetchNuGet { pname = "System.Collections"; version = "4.3.0"; sha256 = "19r4y64dqyrq6k4706dnyhhw7fs24kpp3awak7whzss39dakpxk9"; }) (fetchNuGet { pname = "System.Collections.Concurrent"; version = "4.0.12-rc2-24027"; sha256 = "0yhc5q74vb9vb9cmyrr9p4dfql62dr7c8ajbaxnzzs917v2z68q4"; }) (fetchNuGet { pname = "System.Collections.Concurrent"; version = "4.3.0"; sha256 = "0wi10md9aq33jrkh2c24wr2n9hrpyamsdhsxdcnf43b7y86kkii8"; }) @@ -96,43 +96,43 @@ (fetchNuGet { pname = "System.ComponentModel.TypeConverter"; version = "4.3.0"; sha256 = "17ng0p7v3nbrg3kycz10aqrrlw4lz9hzhws09pfh8gkwicyy481x"; }) (fetchNuGet { pname = "System.Console"; version = "4.0.0-rc2-24027"; sha256 = "072m313av0s5cfpr2rpq07p7c13dy4rh1ngigv3dnr1yyvab9081"; }) (fetchNuGet { pname = "System.Console"; version = "4.3.0"; sha256 = "1flr7a9x920mr5cjsqmsy9wgnv3lvd0h1g521pdr1lkb2qycy7ay"; }) - (fetchNuGet { pname = "System.Diagnostics.Debug"; version = "4.0.11-rc2-24027"; sha256 = "11rz0kdzk4bw9yc85jmskxla7i1bs61kladqzvymrg8xn3lk488a"; }) (fetchNuGet { pname = "System.Diagnostics.Debug"; version = "4.0.11"; sha256 = "0gmjghrqmlgzxivd2xl50ncbglb7ljzb66rlx8ws6dv8jm0d5siz"; }) + (fetchNuGet { pname = "System.Diagnostics.Debug"; version = "4.0.11-rc2-24027"; sha256 = "11rz0kdzk4bw9yc85jmskxla7i1bs61kladqzvymrg8xn3lk488a"; }) (fetchNuGet { pname = "System.Diagnostics.Debug"; version = "4.3.0"; sha256 = "00yjlf19wjydyr6cfviaph3vsjzg3d5nvnya26i2fvfg53sknh3y"; }) (fetchNuGet { pname = "System.Diagnostics.DiagnosticSource"; version = "4.0.0-rc2-24027"; sha256 = "1cizj1xvaz7dm701r4bl6s08858j1r2794y7xx8abyw8j91c957w"; }) (fetchNuGet { pname = "System.Diagnostics.DiagnosticSource"; version = "4.3.0"; sha256 = "0z6m3pbiy0qw6rn3n209rrzf9x1k4002zh90vwcrsym09ipm2liq"; }) - (fetchNuGet { pname = "System.Diagnostics.Tools"; version = "4.0.1-rc2-24027"; sha256 = "080gd86c1pkfkzz67ispkzxc426lfh82zajayiizbgwd6yqa7fv5"; }) (fetchNuGet { pname = "System.Diagnostics.Tools"; version = "4.0.1"; sha256 = "19cknvg07yhakcvpxg3cxa0bwadplin6kyxd8mpjjpwnp56nl85x"; }) + (fetchNuGet { pname = "System.Diagnostics.Tools"; version = "4.0.1-rc2-24027"; sha256 = "080gd86c1pkfkzz67ispkzxc426lfh82zajayiizbgwd6yqa7fv5"; }) (fetchNuGet { pname = "System.Diagnostics.Tools"; version = "4.3.0"; sha256 = "0in3pic3s2ddyibi8cvgl102zmvp9r9mchh82ns9f0ms4basylw1"; }) (fetchNuGet { pname = "System.Diagnostics.TraceSource"; version = "4.3.0"; sha256 = "1kyw4d7dpjczhw6634nrmg7yyyzq72k75x38y0l0nwhigdlp1766"; }) (fetchNuGet { pname = "System.Diagnostics.Tracing"; version = "4.1.0-rc2-24027"; sha256 = "0a0c24lm8yn0hbvd5m64lv7xhs2bmhm5fdpk89xvxj14zdarqhm6"; }) (fetchNuGet { pname = "System.Diagnostics.Tracing"; version = "4.3.0"; sha256 = "1m3bx6c2s958qligl67q7grkwfz3w53hpy7nc97mh6f7j5k168c4"; }) (fetchNuGet { pname = "System.Dynamic.Runtime"; version = "4.0.11"; sha256 = "1pla2dx8gkidf7xkciig6nifdsb494axjvzvann8g2lp3dbqasm9"; }) (fetchNuGet { pname = "System.Dynamic.Runtime"; version = "4.3.0"; sha256 = "1d951hrvrpndk7insiag80qxjbf2y0y39y8h5hnq9612ws661glk"; }) - (fetchNuGet { pname = "System.Globalization"; version = "4.0.11-rc2-24027"; sha256 = "0yl161lr85smzdfzb7fbk0lfrqk5ns71hcnws6vm3sn2aqvfmhpn"; }) (fetchNuGet { pname = "System.Globalization"; version = "4.0.11"; sha256 = "070c5jbas2v7smm660zaf1gh0489xanjqymkvafcs4f8cdrs1d5d"; }) + (fetchNuGet { pname = "System.Globalization"; version = "4.0.11-rc2-24027"; sha256 = "0yl161lr85smzdfzb7fbk0lfrqk5ns71hcnws6vm3sn2aqvfmhpn"; }) (fetchNuGet { pname = "System.Globalization"; version = "4.3.0"; sha256 = "1cp68vv683n6ic2zqh2s1fn4c2sd87g5hpp6l4d4nj4536jz98ki"; }) (fetchNuGet { pname = "System.Globalization.Calendars"; version = "4.0.1-rc2-24027"; sha256 = "0whr2qird567iyc137s10qs0xi6607kjii9wi8a8g1f9lybzlz5k"; }) (fetchNuGet { pname = "System.Globalization.Calendars"; version = "4.3.0"; sha256 = "1xwl230bkakzzkrggy1l1lxmm3xlhk4bq2pkv790j5lm8g887lxq"; }) (fetchNuGet { pname = "System.Globalization.Extensions"; version = "4.3.0"; sha256 = "02a5zfxavhv3jd437bsncbhd2fp1zv4gxzakp1an9l6kdq1mcqls"; }) (fetchNuGet { pname = "System.IdentityModel.Tokens.Jwt"; version = "5.2.1"; sha256 = "08n1z9ngsi26qlhwpjzxafhwl3p279widfci64l2ahxf1gprfqsx"; }) - (fetchNuGet { pname = "System.IO"; version = "4.1.0-rc2-24027"; sha256 = "0rwqmn743gl21xnb3rwqkdacshd5l86pn23mc4bviva3pbncbjs4"; }) (fetchNuGet { pname = "System.IO"; version = "4.1.0"; sha256 = "1g0yb8p11vfd0kbkyzlfsbsp5z44lwsvyc0h3dpw6vqnbi035ajp"; }) + (fetchNuGet { pname = "System.IO"; version = "4.1.0-rc2-24027"; sha256 = "0rwqmn743gl21xnb3rwqkdacshd5l86pn23mc4bviva3pbncbjs4"; }) (fetchNuGet { pname = "System.IO"; version = "4.3.0"; sha256 = "05l9qdrzhm4s5dixmx68kxwif4l99ll5gqmh7rqgw554fx0agv5f"; }) (fetchNuGet { pname = "System.IO.Compression"; version = "4.1.0-rc2-24027"; sha256 = "07s5zxdw3ihxdv0mjxb2ywzg9phcp4bayrhkadzm95l4kcv0xaij"; }) (fetchNuGet { pname = "System.IO.Compression"; version = "4.3.0"; sha256 = "084zc82yi6yllgda0zkgl2ys48sypiswbiwrv7irb3r0ai1fp4vz"; }) (fetchNuGet { pname = "System.IO.Compression.ZipFile"; version = "4.0.1-rc2-24027"; sha256 = "0np6vf9rnfasz0sqys56kpryc84qcqi1a1rfskmycdlxk182p3s2"; }) (fetchNuGet { pname = "System.IO.Compression.ZipFile"; version = "4.3.0"; sha256 = "1yxy5pq4dnsm9hlkg9ysh5f6bf3fahqqb6p8668ndy5c0lk7w2ar"; }) - (fetchNuGet { pname = "System.IO.FileSystem"; version = "4.0.1-rc2-24027"; sha256 = "0hpw3ssnbcv9l1lnlcym2bv3h3sf2znif4brys2i3868s6h946k6"; }) (fetchNuGet { pname = "System.IO.FileSystem"; version = "4.0.1"; sha256 = "0kgfpw6w4djqra3w5crrg8xivbanh1w9dh3qapb28q060wb9flp1"; }) + (fetchNuGet { pname = "System.IO.FileSystem"; version = "4.0.1-rc2-24027"; sha256 = "0hpw3ssnbcv9l1lnlcym2bv3h3sf2znif4brys2i3868s6h946k6"; }) (fetchNuGet { pname = "System.IO.FileSystem"; version = "4.3.0"; sha256 = "0z2dfrbra9i6y16mm9v1v6k47f0fm617vlb7s5iybjjsz6g1ilmw"; }) (fetchNuGet { pname = "System.IO.FileSystem.AccessControl"; version = "4.4.0"; sha256 = "11sna2bv5ai4sivrs7g2gp7g0yjp02s0kasl01j3fa1cvnwwvgkv"; }) - (fetchNuGet { pname = "System.IO.FileSystem.Primitives"; version = "4.0.1-rc2-24027"; sha256 = "04q3sxrfxqgig9scmxblxlb6n6fypv535lby26pi20ixszs19dxc"; }) (fetchNuGet { pname = "System.IO.FileSystem.Primitives"; version = "4.0.1"; sha256 = "1s0mniajj3lvbyf7vfb5shp4ink5yibsx945k6lvxa96r8la1612"; }) + (fetchNuGet { pname = "System.IO.FileSystem.Primitives"; version = "4.0.1-rc2-24027"; sha256 = "04q3sxrfxqgig9scmxblxlb6n6fypv535lby26pi20ixszs19dxc"; }) (fetchNuGet { pname = "System.IO.FileSystem.Primitives"; version = "4.3.0"; sha256 = "0j6ndgglcf4brg2lz4wzsh1av1gh8xrzdsn9f0yznskhqn1xzj9c"; }) (fetchNuGet { pname = "System.IO.FileSystem.Watcher"; version = "4.0.0-rc2-24027"; sha256 = "0g2h4q0w42frdz101z2cxs4n9zpxvzb43wnzawx1f26vpilz7km4"; }) - (fetchNuGet { pname = "System.Linq"; version = "4.1.0-rc2-24027"; sha256 = "0icbsy0vq07achclz32jvnnfdchkgylsjj67gra3fn5906s40n24"; }) (fetchNuGet { pname = "System.Linq"; version = "4.1.0"; sha256 = "1ppg83svb39hj4hpp5k7kcryzrf3sfnm08vxd5sm2drrijsla2k5"; }) + (fetchNuGet { pname = "System.Linq"; version = "4.1.0-rc2-24027"; sha256 = "0icbsy0vq07achclz32jvnnfdchkgylsjj67gra3fn5906s40n24"; }) (fetchNuGet { pname = "System.Linq"; version = "4.3.0"; sha256 = "1w0gmba695rbr80l1k2h4mrwzbzsyfl2z4klmpbsvsg5pm4a56s7"; }) (fetchNuGet { pname = "System.Linq.Expressions"; version = "4.1.0"; sha256 = "1gpdxl6ip06cnab7n3zlcg6mqp7kknf73s8wjinzi4p0apw82fpg"; }) (fetchNuGet { pname = "System.Linq.Expressions"; version = "4.3.0"; sha256 = "0ky2nrcvh70rqq88m9a5yqabsl4fyd17bpr63iy2mbivjs2nyypv"; }) @@ -143,13 +143,13 @@ (fetchNuGet { pname = "System.Net.Primitives"; version = "4.3.0"; sha256 = "0c87k50rmdgmxx7df2khd9qj7q35j9rzdmm2572cc55dygmdk3ii"; }) (fetchNuGet { pname = "System.Net.Sockets"; version = "4.1.0-rc2-24027"; sha256 = "062kbbvm17nhwmcxjnakfv3i23vrk6c9gmz6x8q79kcr5hxr40qs"; }) (fetchNuGet { pname = "System.Net.Sockets"; version = "4.3.0"; sha256 = "1ssa65k6chcgi6mfmzrznvqaxk8jp0gvl77xhf1hbzakjnpxspla"; }) - (fetchNuGet { pname = "System.ObjectModel"; version = "4.0.12-rc2-24027"; sha256 = "065p89awfiz9kb304hqs7wkfpykd9z9kkv84ihm813msv54i8lvj"; }) (fetchNuGet { pname = "System.ObjectModel"; version = "4.0.12"; sha256 = "1sybkfi60a4588xn34nd9a58png36i0xr4y4v4kqpg8wlvy5krrj"; }) + (fetchNuGet { pname = "System.ObjectModel"; version = "4.0.12-rc2-24027"; sha256 = "065p89awfiz9kb304hqs7wkfpykd9z9kkv84ihm813msv54i8lvj"; }) (fetchNuGet { pname = "System.ObjectModel"; version = "4.3.0"; sha256 = "191p63zy5rpqx7dnrb3h7prvgixmk168fhvvkkvhlazncf8r3nc2"; }) (fetchNuGet { pname = "System.Private.DataContractSerialization"; 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version = "4.0.0-rc2-24027"; sha256 = "03pgqbgahfgvigyrsd08snzsryg90shfjlbdv4jk6yzfr27va3n2"; }) @@ -212,37 +212,37 @@ (fetchNuGet { pname = "System.Security.Principal.Windows"; version = "4.3.0"; sha256 = "00a0a7c40i3v4cb20s2cmh9csb5jv2l0frvnlzyfxh848xalpdwr"; }) (fetchNuGet { pname = "System.Security.Principal.Windows"; version = "4.4.0"; sha256 = "11rr16fp68apc0arsymgj18w8ajs9a4366wgx9iqwny4glrl20wp"; }) (fetchNuGet { pname = "System.ServiceProcess.ServiceController"; version = "4.4.0"; sha256 = "0hyijvysbcjh20mbbgajg9wh04nkjd6y5lqxgm0a6m28zjcjshl6"; }) - (fetchNuGet { pname = "System.Text.Encoding"; version = "4.0.11-rc2-24027"; sha256 = "0qkaldb06dwmi8gb940h75n9cs5rgy6sqcpa6f443mhahmagmsbd"; }) (fetchNuGet { pname = "System.Text.Encoding"; version = "4.0.11"; sha256 = "1dyqv0hijg265dwxg6l7aiv74102d6xjiwplh2ar1ly6xfaa4iiw"; }) + (fetchNuGet { pname = "System.Text.Encoding"; version = "4.0.11-rc2-24027"; sha256 = "0qkaldb06dwmi8gb940h75n9cs5rgy6sqcpa6f443mhahmagmsbd"; }) (fetchNuGet { pname = "System.Text.Encoding"; 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}) (fetchNuGet { pname = "System.Threading.Tasks.Extensions"; version = "4.3.0"; sha256 = "1xxcx2xh8jin360yjwm4x4cf5y3a2bwpn2ygkfkwkicz7zk50s2z"; }) (fetchNuGet { pname = "System.Threading.Tasks.Extensions"; version = "4.5.1"; sha256 = "1ikrplvw4m6pzjbq3bfbpr572n4i9mni577zvmrkaygvx85q3myw"; }) (fetchNuGet { pname = "System.Threading.Thread"; version = "4.0.0-rc2-24027"; sha256 = "1gv963m4523m3m9gbn819bfzmhxqsv93m5kaqmbv4ijyziby2872"; }) (fetchNuGet { pname = "System.Threading.ThreadPool"; version = "4.3.0"; sha256 = "027s1f4sbx0y1xqw2irqn6x161lzj8qwvnh2gn78ciiczdv10vf1"; }) (fetchNuGet { pname = "System.Threading.Timer"; version = "4.0.1-rc2-24027"; sha256 = "06kwi42lgf3zw3b5yw668ammbjl6208y182wyqaaqrxgn5gs4yh7"; }) (fetchNuGet { pname = "System.Threading.Timer"; version = "4.3.0"; sha256 = "1nx773nsx6z5whv8kaa1wjh037id2f1cxhb69pvgv12hd2b6qs56"; }) - (fetchNuGet { pname = "System.Xml.ReaderWriter"; version = "4.0.11-rc2-24027"; sha256 = "0vywggi6mqkbr6g1a1fh821hqfnyq1k829vlhfw908l7mj75k34d"; }) (fetchNuGet { pname = "System.Xml.ReaderWriter"; version = "4.0.11"; sha256 = "0c6ky1jk5ada9m94wcadih98l6k1fvf6vi7vhn1msjixaha419l5"; }) + (fetchNuGet { pname = "System.Xml.ReaderWriter"; version = "4.0.11-rc2-24027"; sha256 = "0vywggi6mqkbr6g1a1fh821hqfnyq1k829vlhfw908l7mj75k34d"; }) (fetchNuGet { pname = "System.Xml.ReaderWriter"; version = "4.3.0"; sha256 = "0c47yllxifzmh8gq6rq6l36zzvw4kjvlszkqa9wq3fr59n0hl3s1"; }) - (fetchNuGet { pname = "System.Xml.XDocument"; version = "4.0.11-rc2-24027"; sha256 = "1rvglifac6xq1lawm78w49fq9cl8zvs1g4vrsd2hhf0vb4i85p1z"; }) (fetchNuGet { pname = "System.Xml.XDocument"; version = "4.0.11"; sha256 = "0n4lvpqzy9kc7qy1a4acwwd7b7pnvygv895az5640idl2y9zbz18"; }) + (fetchNuGet { pname = "System.Xml.XDocument"; version = "4.0.11-rc2-24027"; sha256 = "1rvglifac6xq1lawm78w49fq9cl8zvs1g4vrsd2hhf0vb4i85p1z"; }) (fetchNuGet { pname = "System.Xml.XDocument"; version = "4.3.0"; sha256 = "08h8fm4l77n0nd4i4fk2386y809bfbwqb7ih9d7564ifcxr5ssxd"; }) (fetchNuGet { pname = "System.Xml.XmlDocument"; version = "4.3.0"; sha256 = "0bmz1l06dihx52jxjr22dyv5mxv6pj4852lx68grjm7bivhrbfwi"; }) (fetchNuGet { pname = "System.Xml.XmlSerializer"; version = "4.3.0"; sha256 = "07pa4sx196vxkgl3csvdmw94nydlsm9ir38xxcs84qjn8cycd912"; }) diff --git a/pkgs/development/tools/database/litestream/default.nix b/pkgs/development/tools/database/litestream/default.nix index 6a7e53e6cf2..00e541efc0d 100644 --- a/pkgs/development/tools/database/litestream/default.nix +++ b/pkgs/development/tools/database/litestream/default.nix @@ -4,13 +4,13 @@ }: buildGoModule rec { pname = "litestream"; - version = "0.3.7"; + version = "0.3.8"; src = fetchFromGitHub { owner = "benbjohnson"; repo = pname; rev = "v${version}"; - sha256 = "sha256-IEdTLf+fEp19FhwL3IaGT9HGKQoa6HwFox2gf0lvFu4="; + sha256 = "sha256-0Yyx8kbpu3T868hI9tJkBIjplAoQDA4XzhraHhOp61Q="; }; ldflags = [ @@ -19,7 +19,7 @@ buildGoModule rec { "-X main.Version=${version}" ]; - vendorSha256 = "sha256-ScG8cukUuChOvN9r0HvVJsYnu1X9DSO7aD32iu55jIM="; + vendorSha256 = "sha256-zCz9dki87dpZCo+/KuFzwtv/0TlBcvQDTxTuLN2FiHY="; meta = with lib; { description = "Streaming replication for SQLite"; diff --git a/pkgs/development/tools/database/prisma-engines/default.nix b/pkgs/development/tools/database/prisma-engines/default.nix index 48456166b92..18614291d58 100644 --- a/pkgs/development/tools/database/prisma-engines/default.nix +++ b/pkgs/development/tools/database/prisma-engines/default.nix @@ -10,19 +10,19 @@ rustPlatform.buildRustPackage rec { pname = "prisma-engines"; - version = "3.10.0"; + version = "3.11.0"; src = fetchFromGitHub { owner = "prisma"; repo = "prisma-engines"; rev = version; - sha256 = "sha256-0m0RjIasEGB9QxZc7wKCMLnxHXkSlvCDA2QWa87mRRs="; + sha256 = "sha256-z7ebwidY+p350XaGeyohoSHWc2DhfzpRxsRDLON1BuA="; }; # Use system openssl. OPENSSL_NO_VENDOR = 1; - cargoSha256 = "sha256-KNQa+wLLl4abz48QKYkWu7A+FTGIyB+1EWAnLuWpJwc="; + cargoSha256 = "sha256-PQdLoNJL9szPzPtFRznWS0lngTvtWK+Ko2rp4JWH9dQ="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/development/tools/database/sqlfluff/default.nix b/pkgs/development/tools/database/sqlfluff/default.nix index 82b7ea8ea95..4ecb24d3712 100644 --- a/pkgs/development/tools/database/sqlfluff/default.nix +++ b/pkgs/development/tools/database/sqlfluff/default.nix @@ -5,13 +5,13 @@ python3.pkgs.buildPythonApplication rec { pname = "sqlfluff"; - version = "0.11.0"; + version = "0.11.1"; src = fetchFromGitHub { owner = pname; repo = pname; rev = version; - hash = "sha256-Cem53w/pzSDTi9A9mh9VeLlRn1m6KhkxWaqJjEtfwUs="; + hash = "sha256-wd/tuFOoWhts/i+FCNVXmREUHAsh6hYOUowCyZjg92Y="; }; propagatedBuildInputs = with python3.pkgs; [ diff --git a/pkgs/development/tools/doctl/default.nix b/pkgs/development/tools/doctl/default.nix index 3bcd0d6777d..d7667538e8e 100644 --- a/pkgs/development/tools/doctl/default.nix +++ b/pkgs/development/tools/doctl/default.nix @@ -2,7 +2,7 @@ buildGoModule rec { pname = "doctl"; - version = "1.70.0"; + version = "1.71.1"; vendorSha256 = null; @@ -31,7 +31,7 @@ buildGoModule rec { owner = "digitalocean"; repo = "doctl"; rev = "v${version}"; - sha256 = "sha256-oLcWVUP9A/tcJYKiaBrqAdyNKESaVFOaNiG/fAVQb2c="; + sha256 = "sha256-Y6YabrpM1WcNGp5ksvq3SBuAS6KEUVzEfxsPmBDS+Io="; }; meta = with lib; { diff --git a/pkgs/development/tools/earthly/default.nix b/pkgs/development/tools/earthly/default.nix index 477b28b6a1f..63555284296 100644 --- a/pkgs/development/tools/earthly/default.nix +++ b/pkgs/development/tools/earthly/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "earthly"; - version = "0.6.10"; + version = "0.6.11"; src = fetchFromGitHub { owner = "earthly"; repo = "earthly"; rev = "v${version}"; - sha256 = "sha256-CzVcoIvf9sqomua5AJtNpCnGfPmCNJMwex/l7p+hEfw="; + sha256 = "sha256-awlE+k4Oa64Z2n+XbeDuezea+5D0ol7hyscVY6j52gI="; }; vendorSha256 = "sha256-uUx9C7uEdXjhDWxehGHuhuFQXdUjZAXK3qogESkRm8E="; diff --git a/pkgs/development/tools/electron/default.nix b/pkgs/development/tools/electron/default.nix index 655ad71e7b2..24dc8614b29 100644 --- a/pkgs/development/tools/electron/default.nix +++ b/pkgs/development/tools/electron/default.nix @@ -73,43 +73,43 @@ rec { headers = "0vvizddmhprprbdf6bklasz6amwc254bpc9j0zlx23d1pgyxpnhc"; }; - electron_14 = mkElectron "14.2.6" { - armv7l-linux = "fd115652f491fff6a28bf39dc41e3c7f1b638e7dcc7856c33b6a97c7763ea9a3"; - aarch64-linux = "530df3030aeb2c0f67ba4bc210c0f0fe77670001d2ba30ad6858f74952528df2"; - x86_64-linux = "c3f91ced7e429079d43c182f47cea1eceef17ab65c390e15f9c6af56e58ed3d9"; - i686-linux = "d66881d0747c99618c500b46e044eb4e97442400624fbcf9a6af114743e6e8db"; - x86_64-darwin = "15db43c17a33bf9e31f66f5025e0810dfbd2b237f7645eda51409de7930cc9d1"; - aarch64-darwin = "a5f7b8cc5f6dfc7561368d2f09745967bb553a29a22ef74af8f795225483338a"; - headers = "0rxbij6qvi0xzcmbxf3fm1snvakaxp9c512z9ni36y98sgg4s3l8"; + electron_14 = mkElectron "14.2.7" { + armv7l-linux = "bb0c25671daa0dc235e212831d62f18b9a7f2692279bcd8e4a15f2d84ee7124d"; + aarch64-linux = "149c5df2cf98ee0a2ce5445b3fb00752f42c3f7ab9677b7a54ba01fba2e2f4ec"; + x86_64-linux = "ad80f424e8d8d79f0be078d8a1ddef8fd659fa3dd8aaf6704ab97f2a13489558"; + i686-linux = "82b29272cb52dbe969c0bd6cf9b69896c86abe1d9ef473a3844c0ab3dc92b353"; + x86_64-darwin = "2a5d8336dcd140158964801d482344756377d924a06e6605959034a41f7e026b"; + aarch64-darwin = "b45869ff61bdf392bca498529b6445d47a784079f6a33af6b19d517953f03fd8"; + headers = "0339fs3iyp869xi1xmn9z2b1n32wf408cc0z9bz6shns44ymkyhd"; }; - electron_15 = mkElectron "15.4.0" { - armv7l-linux = "40c073a3b416f83264327bdf5e33b334ffcd56a729ef237360d66f520f670d16"; - aarch64-linux = "ef18ba74b4fa34a26f9ee819bb908c60d0dd9ec2048414629979760f262d72f8"; - x86_64-linux = "5bdea4cbf5559491e9ad9f365fa6f7ec26603fd6f68bfa8848f2884ebd51662d"; - i686-linux = "636d0e28bb20ca127c9b8722fe39e7e7d95fc63bd15b156b7af563296b3d9595"; - x86_64-darwin = "8a132b2be0f27c7e8fa9a91a8b4b0fcdf3ec571c721cb5f5610dc8a6b3f0fd26"; - aarch64-darwin = "82b29c37a427464a9278d617435ca19f472b00689c9e58163e99f30b90f33046"; - headers = "0fc1sck7g160klpqzfcqv9zc45ia914mrncyma58zzcbzpk6k6yb"; + electron_15 = mkElectron "15.4.1" { + armv7l-linux = "e0fe5daed46a5d718b3209fa301aea743df694daf6605f9313f4ca6c70fe5167"; + aarch64-linux = "fa108edd4c146811bdee842fcd278b046ae0ff157de5e072c3ff3ac0bcb310c2"; + x86_64-linux = "867095924d434b3918df8576e7af94fecea4d29461fcfb69c40161f02158ff15"; + i686-linux = "8e79fa9f4125f254abb437445fed8f3f8ec10dd2462e1ced3e7df49c622e087d"; + x86_64-darwin = "899d16a0e0157809c297ceb3710c53441ec4396333d9ad5b65297446874e14dc"; + aarch64-darwin = "8295bf45dab1131dfdfd15654a0b1d85bfae221052ba64353368a2c0faaaa3ff"; + headers = "073697wjq60cnz42xmnjsr0xqcmcsl4m48mmzrz1rxrc8mvi86gr"; }; - electron_16 = mkElectron "16.0.10" { - armv7l-linux = "1a72fe59011cfcc1f376f2948dd5a70d2f75d6c12fb682a0246d2e596227b5e0"; - aarch64-linux = "46cd1393816364a666ead410505bce4b51d68ce872446a71d16886b88c4b275a"; - x86_64-linux = "3b4779e41e27200ce5fa94d20f9df05ff5c757be6805eb0e8952fe198d66f324"; - i686-linux = "9e1426a8135d3fe195ba9fc1a5ea5ad4d5ce96bd513691897b39106698e3c3c8"; - x86_64-darwin = "00b0222efa67fbb29f723fabebc4221646ebd6d5fdc09524df9a203f63ce660c"; - aarch64-darwin = "1203f6ec4e8b97312254ceb122ca4399f39ae67bfe1636e426a798c89ec2a9ee"; - headers = "10f6px88vg6napyhniczi6l660qs4l5mm0b9gdlds4i1y94s1zrl"; + electron_16 = mkElectron "16.1.0" { + armv7l-linux = "f3ab34c73b4100ffc5041ed9aa0608d1dc6b98fe3c2caa14be3d5c3ffbebda76"; + aarch64-linux = "e80a7e4a59b94c7cd02b16ca37a2b0f26ddb58ddac23135c6180b238589f1c62"; + x86_64-linux = "36c79af4d05e89ef9c9616a156f63adc5b453ee6bee5d8f4331e75ee77198e85"; + i686-linux = "7129a96fc33de70cfe5d6d0e17ecff1b4dcf52d825a6ad05b10ca67da7b43665"; + x86_64-darwin = "723859249e959948cdd339acf708022fb0195b433809af25b4a9f4d69b9da52f"; + aarch64-darwin = "e76558028979f70107e5b1897275a9789be20b13991bfbcebeab7fc220f15764"; + headers = "0yv9rssrfi0hdzrjf1n735dsz9sgy78jzxdcf9is2387yrr1qiyz"; }; - electron_17 = mkElectron "17.1.0" { - armv7l-linux = "09d92195821aad4ac03fbc858287a7372b6aa059081bb825d267853ee1b0425d"; - aarch64-linux = "6a34d6802d44a391902f53baf0adc8b819d33e7c31b34614757b17b3223c9d1e"; - x86_64-linux = "106ec28a5969366c1e1f642cc33ac41950c68bd182db23b04d7ac6886bfe28e8"; - i686-linux = "19fe206be07a6df7f9f0ecdb411e3cafd3a53618edb19cc6adc77156f698444e"; - x86_64-darwin = "bd80d6b0b62c9bec195d264aa21a255f4324a8b56849e04972c1fcc262757c31"; - aarch64-darwin = "83fe2fc24976d09a0e0fcc3a60226f190cf9b67287fe4434d3d76d59fa45315c"; - headers = "1zv1pigfbis1bsan28wx3bgkdwjc48pjq19wmxs73kd1khsy6w8r"; + electron_17 = mkElectron "17.1.2" { + armv7l-linux = "b561c04c9fa8c512f418ea5c32f5526732e1ccd150ee4830a0091d0fa1b7e31c"; + aarch64-linux = "cda7e66c6672def9edd881107c28e2eec09b7802a38227ac89bb233191ce4840"; + x86_64-linux = "7e7c35e8c1a0fc451e7af19fa73264881ae2c4672c52a2ae1cdd61604650ca94"; + i686-linux = "de87a7952c93c1d8e8c533a700bbfc76d3893e9ad438413507d11450b80a9c97"; + x86_64-darwin = "d4382d3f01b750676a1f3c9e2273ad69cac16dc64a4145469c663bcda8d2471b"; + aarch64-darwin = "135dec87211fcefdb53ab1fef13344c7b71a321f7c4f6846f260c1e0848e73bf"; + headers = "15k234d044lgmc3psyxz9syy9wvzgn54znklak9sv6gcajjzll10"; }; } diff --git a/pkgs/development/tools/esbuild/default.nix b/pkgs/development/tools/esbuild/default.nix index f7335a8ef8d..3d136a62f52 100644 --- a/pkgs/development/tools/esbuild/default.nix +++ b/pkgs/development/tools/esbuild/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "esbuild"; - version = "0.14.25"; + version = "0.14.27"; src = fetchFromGitHub { owner = "evanw"; repo = "esbuild"; rev = "v${version}"; - sha256 = "sha256-95xVQU1AWIDvMlWJpB54RxGoOtZtaUlyfmfdcKERe6Y="; + sha256 = "sha256-h5PodIFzqD0hJb89eGxMJN6uvrF2exOHJYk+Wmwvso8="; }; vendorSha256 = "sha256-QPkBR+FscUc3jOvH7olcGUhM6OW4vxawmNJuRQxPuGs="; diff --git a/pkgs/development/tools/evans/default.nix b/pkgs/development/tools/evans/default.nix index 29dadf24304..95e0839f46b 100644 --- a/pkgs/development/tools/evans/default.nix +++ b/pkgs/development/tools/evans/default.nix @@ -2,18 +2,18 @@ buildGoModule rec { pname = "evans"; - version = "0.10.2"; + version = "0.10.3"; src = fetchFromGitHub { owner = "ktr0731"; repo = pname; rev = "v${version}"; - sha256 = "sha256-F9URMwQaSAQZaiZ95rDZqe8+YcJ9aMInSTIgQ7JLyOw="; + sha256 = "sha256-4KHJodqmx03uQ+HJBWmKbIBvkLh80N4fHnYL4GLciNc="; }; subPackages = [ "." ]; - vendorSha256 = "sha256-ICGnjI9sFwt81rZCnap/rggfSs4+pZNmLouoTY7CYKw="; + vendorSha256 = "sha256-to75gON3Kl0GHgVhhrW8I6GWOg9/KrUts3rwDLAfFnM="; meta = with lib; { description = "More expressive universal gRPC client"; diff --git a/pkgs/development/tools/golangci-lint/default.nix b/pkgs/development/tools/golangci-lint/default.nix index 6334c00fc0b..e651cd82b1d 100644 --- a/pkgs/development/tools/golangci-lint/default.nix +++ b/pkgs/development/tools/golangci-lint/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "golangci-lint"; - version = "1.44.2"; + version = "1.45.0"; src = fetchFromGitHub { owner = "golangci"; repo = "golangci-lint"; rev = "v${version}"; - sha256 = "sha256-RMZZLvCJcTMzHOzUfT6aEC21T5dCwu1YOUuQ9PLS3fc="; + sha256 = "sha256-nIkDtWUGKSeuGLCgyAYzrIhEk2INX0gZUCOmq+BKbDY="; }; - vendorSha256 = "sha256-X2hZ4BQgYHI1mx/Ywky0oo7IMtrppu+rLq2LRLPH3fY="; + vendorSha256 = "sha256-ruthLNtMYMi2q3fuxOJSsJw5w3uqZi88yJ3BFgNCAHs="; doCheck = false; diff --git a/pkgs/development/tools/gomodifytags/default.nix b/pkgs/development/tools/gomodifytags/default.nix index 254113f2106..7a4070d96d6 100644 --- a/pkgs/development/tools/gomodifytags/default.nix +++ b/pkgs/development/tools/gomodifytags/default.nix @@ -2,19 +2,17 @@ buildGoModule rec { pname = "gomodifytags"; - version = "1.6.0"; - - vendorSha256 = null; - - doCheck = false; + version = "1.16.0"; src = fetchFromGitHub { owner = "fatih"; repo = "gomodifytags"; rev = "v${version}"; - sha256 = "1wmzl5sk5mc46njzn86007sqyyv6han058ppiw536qyhk88rzazq"; + sha256 = "1yhkn9mdvsn9i5v03c5smz32zlhkylnxhkcbjb7llafxzbhzgfm6"; }; + vendorSha256 = "sha256-8efqJfu+gtoFbhdlDZfb8NsXV9hBDI2pvAQNH18VVhU="; + meta = { description = "Go tool to modify struct field tags"; homepage = "https://github.com/fatih/gomodifytags"; diff --git a/pkgs/development/tools/gopls/default.nix b/pkgs/development/tools/gopls/default.nix index 0f57be390f2..069cd2b37fe 100644 --- a/pkgs/development/tools/gopls/default.nix +++ b/pkgs/development/tools/gopls/default.nix @@ -1,18 +1,18 @@ -{ lib, buildGoModule, fetchFromGitHub }: +{ lib, buildGo118Module, fetchFromGitHub }: -buildGoModule rec { +buildGo118Module rec { pname = "gopls"; - version = "0.8.0"; + version = "0.8.1"; src = fetchFromGitHub { owner = "golang"; repo = "tools"; rev = "gopls/v${version}"; - sha256 = "sha256-VBan3IKqf3AFrPoryT/U7lGabFHSXMhaBpnNw3LRH/I="; + sha256 = "sha256-ypuZQt6iF1QRk/FsoTKnJlb5CWIEkvK7r37t4rSxhmU="; }; modRoot = "gopls"; - vendorSha256 = "sha256-pW4G89fYFwVM2EkIqTCsl2lhN677LIMFpKPvLVV2boY="; + vendorSha256 = "sha256-SY08322wuJl8F790oXGmYo82Yadi14kDpoVGCGVMF0c="; doCheck = false; diff --git a/pkgs/development/tools/jp/default.nix b/pkgs/development/tools/jp/default.nix index f1f5b37c10d..ba78a4ce6bc 100644 --- a/pkgs/development/tools/jp/default.nix +++ b/pkgs/development/tools/jp/default.nix @@ -1,18 +1,18 @@ -{ lib, buildGoPackage, fetchFromGitHub }: +{ lib, buildGoModule, fetchFromGitHub }: -buildGoPackage rec { +buildGoModule rec { pname = "jp"; - version = "0.1.3"; - rev = version; - - goPackagePath = "github.com/jmespath/jp"; + version = "0.2.1"; src = fetchFromGitHub { - inherit rev; + rev = version; owner = "jmespath"; repo = "jp"; - sha256 = "0fdbnihbd0kq56am3bmh2zrfk4fqjslcbm48malbgmpqw3a5nvpi"; + hash = "sha256-a3WvLAdUZk+Y+L+opPDMBvdN5x5B6nAi/lL8JHJG/gY="; }; + + vendorSha256 = "sha256-K6ZNtART7tcVBH5myV6vKrKWfnwK8yTa6/KK4QLyr00="; + meta = with lib; { description = "A command line interface to the JMESPath expression language for JSON"; homepage = "https://github.com/jmespath/jp"; diff --git a/pkgs/development/tools/jql/default.nix b/pkgs/development/tools/jql/default.nix index 732175edab9..7607b1307f4 100644 --- a/pkgs/development/tools/jql/default.nix +++ b/pkgs/development/tools/jql/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "jql"; - version = "3.1.1"; + version = "3.1.2"; src = fetchFromGitHub { owner = "yamafaktory"; repo = pname; rev = "v${version}"; - sha256 = "sha256-CntAxOsAaKkCvQanLZ4d99VEGrbsVM+IYOhUuimvjlA="; + sha256 = "sha256-UC+1I87PPDuu+/A5zO2Q/Z5KbO/5jHuxsJ0r7a+uDLM="; }; - cargoSha256 = "sha256-mzHLAmm0wvF35ku+wg6QG/pKwIFjb22fOtBmMhgC0Ik="; + cargoSha256 = "sha256-0ezrcploLboYExcRzNnKj/vWgbJuBhteWi/Imlr4Wsg="; meta = with lib; { description = "A JSON Query Language CLI tool built with Rust"; diff --git a/pkgs/development/tools/k6/default.nix b/pkgs/development/tools/k6/default.nix index d50062e4bdb..66ff4a8b2df 100644 --- a/pkgs/development/tools/k6/default.nix +++ b/pkgs/development/tools/k6/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "k6"; - version = "0.36.0"; + version = "0.37.0"; src = fetchFromGitHub { owner = "grafana"; repo = pname; rev = "v${version}"; - sha256 = "sha256-yWEh0sPMGe6mNcLKhbmJEUCHzZKFGMcTRNQrHgiQ+BQ="; + sha256 = "sha256-5pxOg+pwa2VrEWinDadx2ZFYXiQgochbU4bCkJEezQw="; }; subPackages = [ "./" ]; diff --git a/pkgs/development/tools/kcli/default.nix b/pkgs/development/tools/kcli/default.nix index 8f0aecba34d..fc604a68cee 100644 --- a/pkgs/development/tools/kcli/default.nix +++ b/pkgs/development/tools/kcli/default.nix @@ -13,8 +13,6 @@ buildGoModule rec { vendorSha256 = "0zj2hls8m0l9xsfv680wiwq1g2qjdjslv2yx3yd4rzxdsv2wz09a"; - doCheck = false; - subPackages = [ "." ]; meta = with lib; { diff --git a/pkgs/development/tools/ko/default.nix b/pkgs/development/tools/ko/default.nix index a7562429db5..ca187dea93d 100644 --- a/pkgs/development/tools/ko/default.nix +++ b/pkgs/development/tools/ko/default.nix @@ -7,13 +7,13 @@ buildGoModule rec { pname = "ko"; - version = "0.10.0"; + version = "0.11.1"; src = fetchFromGitHub { owner = "google"; repo = pname; rev = "v${version}"; - sha256 = "sha256-Xhe5WNHQ+Oa1m/6VwC3zCwWzXRc1spSfPp4jySsOcuU="; + sha256 = "sha256-VtPry8sF+W46gc2lI3uiE4wqilo1WhH+940QKPZ5cyI="; }; vendorSha256 = null; @@ -40,8 +40,9 @@ buildGoModule rec { postInstall = '' installShellCompletion --cmd ko \ - --bash <($out/bin/ko completion) \ - --zsh <($out/bin/ko completion --zsh) + --bash <($out/bin/ko completion bash) \ + --fish <($out/bin/ko completion fish) \ + --zsh <($out/bin/ko completion zsh) ''; meta = with lib; { diff --git a/pkgs/development/tools/ktlint/default.nix b/pkgs/development/tools/ktlint/default.nix index 73fdb3dff8f..08bfa727758 100644 --- a/pkgs/development/tools/ktlint/default.nix +++ b/pkgs/development/tools/ktlint/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "ktlint"; - version = "0.44.0"; + version = "0.45.0"; src = fetchurl { url = "https://github.com/pinterest/ktlint/releases/download/${version}/ktlint"; - sha256 = "1l2pmvqw8rjl2xmsdp31j8015clshab6p81i3i05h40rjjz57mvr"; + sha256 = "sha256-M6M1hYA13QTcX4btcni+GB1NEJYEEeuITIpmY2qS9CM="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/development/tools/kustomize/kustomize-sops.nix b/pkgs/development/tools/kustomize/kustomize-sops.nix index 04024dc3acf..4b5e6d8bb38 100644 --- a/pkgs/development/tools/kustomize/kustomize-sops.nix +++ b/pkgs/development/tools/kustomize/kustomize-sops.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "kustomize-sops"; - version = "3.0.1"; + version = "3.0.2"; src = fetchFromGitHub { owner = "viaduct-ai"; repo = pname; rev = "v${version}"; - sha256 = "sha256-ZCEgv+2WC1XLDFdRtigkiWu81zLMHvmB8vvIBWN2UYY="; + sha256 = "sha256-6mLfMbYbdsjWHpfUHP3Q5nsqdMXo/82+A9PV8xWZBM0="; }; - vendorSha256 = "sha256-LFa0s2FBkw97P0CV+9JBmUAjaKVO+RzCX+iWGPUD9iA="; + vendorSha256 = "sha256-aRS+MwME72qIMyhnnIRqmrx5hcQ1V0pLIBJqSoR+Fkk="; installPhase = '' mkdir -p $out/lib/viaduct.ai/v1/ksops-exec/ diff --git a/pkgs/development/tools/lazygit/default.nix b/pkgs/development/tools/lazygit/default.nix index 1902d9e969c..4dca5d98e0b 100644 --- a/pkgs/development/tools/lazygit/default.nix +++ b/pkgs/development/tools/lazygit/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "lazygit"; - version = "0.33"; + version = "0.34"; src = fetchFromGitHub { owner = "jesseduffield"; repo = pname; rev = "v${version}"; - sha256 = "sha256-ltkBzhlxgNzioSBnlkBu9UtBHZlxFtnYlUhg/+lV0gc="; + sha256 = "sha256-AXbbgNP10r3BVRXg9R8Ssd8yORCcQwaGRuHV6yXz5i0="; }; vendorSha256 = null; diff --git a/pkgs/development/tools/misc/autoconf/2.13.nix b/pkgs/development/tools/misc/autoconf/2.13.nix index dc36028332f..4ff990ca0ed 100644 --- a/pkgs/development/tools/misc/autoconf/2.13.nix +++ b/pkgs/development/tools/misc/autoconf/2.13.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, m4, perl, xz }: +{ lib, stdenv, fetchurl, m4, perl }: stdenv.mkDerivation rec { pname = "autoconf"; @@ -9,7 +9,6 @@ stdenv.mkDerivation rec { sha256 = "07krzl4czczdsgzrrw9fiqx35xcf32naf751khg821g5pqv12qgh"; }; - nativebuildInputs = [ xz ]; buildInputs = [ m4 perl ]; doCheck = true; diff --git a/pkgs/development/tools/misc/ctags/default.nix b/pkgs/development/tools/misc/ctags/default.nix index fde7307b27d..dc6ee481523 100644 --- a/pkgs/development/tools/misc/ctags/default.nix +++ b/pkgs/development/tools/misc/ctags/default.nix @@ -1,12 +1,12 @@ { lib, stdenv, fetchsvn, autoreconfHook }: stdenv.mkDerivation rec { - name = "ctags-${revision}"; - revision = "816"; + pname = "ctags"; + version = "816"; src = fetchsvn { url = "https://svn.code.sf.net/p/ctags/code/trunk"; - rev = revision; + rev = version; sha256 = "0jmbkrmscbl64j71qffcc39x005jrmphx8kirs1g2ws44wil39hf"; }; diff --git a/pkgs/development/tools/misc/gdb/default.nix b/pkgs/development/tools/misc/gdb/default.nix index c173b96f6eb..5bb5bc0652f 100644 --- a/pkgs/development/tools/misc/gdb/default.nix +++ b/pkgs/development/tools/misc/gdb/default.nix @@ -27,11 +27,11 @@ assert pythonSupport -> python3 != null; stdenv.mkDerivation rec { pname = targetPrefix + basename; - version = "11.1"; + version = "11.2"; src = fetchurl { url = "mirror://gnu/gdb/${basename}-${version}.tar.xz"; - sha256 = "151z6d0265hv9cgx9zqqa4bd6vbp20hrljhd6bxl7lr0gd0crkyc"; + hash = "sha256-FJfDanGIG4ZxqahKDuQPqreIyjDXuhnYRjw8x4cVLjI="; }; postPatch = if stdenv.isDarwin then '' diff --git a/pkgs/development/tools/misc/grcov/default.nix b/pkgs/development/tools/misc/grcov/default.nix index 45e1ba8e4bc..04ed4a1046b 100644 --- a/pkgs/development/tools/misc/grcov/default.nix +++ b/pkgs/development/tools/misc/grcov/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "grcov"; - version = "0.8.7"; + version = "0.8.8"; src = fetchFromGitHub { owner = "mozilla"; repo = pname; rev = "v${version}"; - sha256 = "sha256-4McF9tLIjDCftyGI29pm/LnTUBVWG+pY5z+mGFKySQM="; + sha256 = "sha256-OITtZdI9d5zQVI02s5gJF9lWCjZZgE7YZRfFROU040o="; }; - cargoSha256 = "sha256-/filuQ4AWsKVIsXbDX7S1yhCArLNTZpOMEn3ID6WuMo="; + cargoSha256 = "sha256-AZVkS/huEsA1wdVB/xUGCCjY5AWJxaU1DD/OlEURw/c="; # tests do not find grcov path correctly checkFlags = let diff --git a/pkgs/development/tools/misc/help2man/default.nix b/pkgs/development/tools/misc/help2man/default.nix index 4521eee95a2..f7d1667dfa2 100644 --- a/pkgs/development/tools/misc/help2man/default.nix +++ b/pkgs/development/tools/misc/help2man/default.nix @@ -7,11 +7,11 @@ stdenv.mkDerivation rec { pname = "help2man"; - version = "1.48.5"; + version = "1.49.1"; src = fetchurl { url = "mirror://gnu/${pname}/${pname}-${version}.tar.xz"; - sha256 = "sha256-ZznkyqQuau0zmb5Dh8p5OZZAlnM06RcohjuOqpIlgr4="; + sha256 = "sha256-/ZmmZOxL6ahqDdiXGZifFPNnqcB5110OHXHhinu1GwM="; }; strictDeps = true; diff --git a/pkgs/development/tools/misc/lit/default.nix b/pkgs/development/tools/misc/lit/default.nix index 8a36c52e7ae..aa991e8ea97 100644 --- a/pkgs/development/tools/misc/lit/default.nix +++ b/pkgs/development/tools/misc/lit/default.nix @@ -2,11 +2,11 @@ python3.pkgs.buildPythonApplication rec { pname = "lit"; - version = "13.0.0"; + version = "14.0.0"; src = python3.pkgs.fetchPypi { inherit pname version; - sha256 = "4da976f3d114e4ba6ba06cbe660ce1393230f4519c4df15b90bc1840f00e4195"; + sha256 = "45e08ce87b0ea56ab632aa02fa857418a5dd241a711c7c756878b73a130c3efe"; }; passthru = { diff --git a/pkgs/development/tools/misc/terraform-ls/default.nix b/pkgs/development/tools/misc/terraform-ls/default.nix index de928d35fa0..e85e014368a 100644 --- a/pkgs/development/tools/misc/terraform-ls/default.nix +++ b/pkgs/development/tools/misc/terraform-ls/default.nix @@ -2,15 +2,15 @@ buildGoModule rec { pname = "terraform-ls"; - version = "0.25.2"; + version = "0.26.0"; src = fetchFromGitHub { owner = "hashicorp"; repo = pname; rev = "v${version}"; - sha256 = "sha256-dFmXROqh1HYPthzmOE07oyZglaQyx7JqxqYDlLpysrM="; + sha256 = "sha256-Xq9HojFjUrdThXvQ4M8o4LLmxopVErnN3WGUgI79BCw="; }; - vendorSha256 = "sha256-5g/s8WDzxobORFY12YdDQ6rDmr9gQzViv1FFrVwrVIE="; + vendorSha256 = "sha256-iSgK+FOD9olVN4bR2jmtWndaRHrh9pfo/42COTiIh9c="; ldflags = [ "-s" "-w" "-X main.version=v${version}" "-X main.prerelease=" ]; diff --git a/pkgs/development/tools/misc/terraformer/default.nix b/pkgs/development/tools/misc/terraformer/default.nix index d4609db2d34..ccd7c703366 100644 --- a/pkgs/development/tools/misc/terraformer/default.nix +++ b/pkgs/development/tools/misc/terraformer/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "terraformer"; - version = "0.8.18"; + version = "0.8.19"; src = fetchFromGitHub { owner = "GoogleCloudPlatform"; repo = pname; rev = version; - sha256 = "sha256-F+OmeXCb0Q2Qqu0T+dqdxvUYszg4ED/zoayH9iO6PCM="; + sha256 = "sha256-h6hqgAHyMNnE7AXNPTUM2srgHW9WGcGmO8d30U2IbSo="; }; - vendorSha256 = "sha256-fCovSA3ZbKn9DrDlb/SXoe8iQTTEAiiDZFSpHUPmxzo="; + vendorSha256 = "sha256-bT6+fH0VJfcgehiiLIDTEYyWgVHIMUGuRaebzm2st60="; subPackages = [ "." ]; diff --git a/pkgs/development/tools/omnisharp-roslyn/default.nix b/pkgs/development/tools/omnisharp-roslyn/default.nix index 1099e7cc800..5daa8a211c5 100644 --- a/pkgs/development/tools/omnisharp-roslyn/default.nix +++ b/pkgs/development/tools/omnisharp-roslyn/default.nix @@ -62,6 +62,21 @@ let </configuration> ''; + # temporary version patch - this needs to be fixed upstream + sdkVersionPatch = writeText "global.json.patch" '' +diff --git a/global.json b/global.json +index fe0b480a..a2ce2eeb 100644 +--- a/global.json ++++ b/global.json +@@ -1,5 +1,5 @@ + { + "sdk": { +- "version": "6.0.100" ++ "version": "6.0" + } + } +''; + in stdenv.mkDerivation rec { pname = "omnisharp-roslyn"; @@ -76,6 +91,8 @@ in stdenv.mkDerivation rec { nativeBuildInputs = [ makeWrapper dotnet-sdk ]; + patches = [ sdkVersionPatch ]; + buildPhase = '' runHook preBuild diff --git a/pkgs/development/tools/omnisharp-roslyn/deps.nix b/pkgs/development/tools/omnisharp-roslyn/deps.nix index 47af76fdd4a..f5d618827b3 100644 --- a/pkgs/development/tools/omnisharp-roslyn/deps.nix +++ b/pkgs/development/tools/omnisharp-roslyn/deps.nix @@ -65,26 +65,26 @@ } { pname = "microsoft.aspnetcore.app.runtime.win-arm64"; - version = "6.0.0"; + version = "6.0.3"; src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/microsoft.aspnetcore.app.runtime.win-arm64/6.0.0/microsoft.aspnetcore.app.runtime.win-arm64.6.0.0.nupkg"; - sha256 = "0k2011d3jbfblfm4qspwjyv5pg1xqac408vblshgmf4sz7hlyzb3"; + url = "https://api.nuget.org/v3-flatcontainer/microsoft.aspnetcore.app.runtime.win-arm64/6.0.3/microsoft.aspnetcore.app.runtime.win-arm64.6.0.3.nupkg"; + sha256 = "0wxnwqg43hd1hk07j1wqhfrwbjm5ly7bsy9z2jgy9zf8lya4qs9a"; }; } { pname = "microsoft.aspnetcore.app.runtime.win-x64"; - version = "6.0.0"; + version = "6.0.3"; src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/microsoft.aspnetcore.app.runtime.win-x64/6.0.0/microsoft.aspnetcore.app.runtime.win-x64.6.0.0.nupkg"; - sha256 = "1j8cn97swc67ly7ca7m05akczrswbg0gjsk7473vad6770ph79vm"; + url = "https://api.nuget.org/v3-flatcontainer/microsoft.aspnetcore.app.runtime.win-x64/6.0.3/microsoft.aspnetcore.app.runtime.win-x64.6.0.3.nupkg"; + sha256 = "11kv50kll3iq88kn40f5v5qlq8mydv6y6xz2cbzjw4aadd44njwq"; }; } { pname = "microsoft.aspnetcore.app.runtime.win-x86"; - version = "6.0.0"; + version = "6.0.3"; src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/microsoft.aspnetcore.app.runtime.win-x86/6.0.0/microsoft.aspnetcore.app.runtime.win-x86.6.0.0.nupkg"; - sha256 = "0l64rphcqjwlbsxvfc8albzs494xyhl3bgw6ll68h3imhml193k5"; + url = "https://api.nuget.org/v3-flatcontainer/microsoft.aspnetcore.app.runtime.win-x86/6.0.3/microsoft.aspnetcore.app.runtime.win-x86.6.0.3.nupkg"; + sha256 = "1c1qx840hwcp6a26dbx10f24pw9kzlvr15w3s1pakldygng5skwm"; }; } { @@ -552,51 +552,59 @@ }; } { + pname = "microsoft.net.stringtools"; + version = "1.0.0"; + src = fetchurl { + url = "https://api.nuget.org/v3-flatcontainer/microsoft.net.stringtools/1.0.0/microsoft.net.stringtools.1.0.0.nupkg"; + sha256 = "06yakiyzgss399giivfx6xdrnfxqfsvy5fzm90scjanvandv0sdj"; + }; + } + { pname = "microsoft.netcore.app.host.win-arm64"; - version = "6.0.0"; + version = "6.0.3"; src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/microsoft.netcore.app.host.win-arm64/6.0.0/microsoft.netcore.app.host.win-arm64.6.0.0.nupkg"; - sha256 = "1cbqpyha0ys7f6pm90mxmr0f070imhqfnn9kgvi3hqszbv9fv808"; + url = "https://api.nuget.org/v3-flatcontainer/microsoft.netcore.app.host.win-arm64/6.0.3/microsoft.netcore.app.host.win-arm64.6.0.3.nupkg"; + sha256 = "1dhdr3ccaag3yb803qswkm1zvvwc9q6m3d9nvxvb5f8m94rsbhka"; }; } { pname = "microsoft.netcore.app.host.win-x64"; - version = "6.0.0"; + version = "6.0.3"; src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/microsoft.netcore.app.host.win-x64/6.0.0/microsoft.netcore.app.host.win-x64.6.0.0.nupkg"; - sha256 = "1016ld3kg4dav2yxxh0i32cy0ixv7s0wl9czydbhkbs2d8669kfx"; + url = "https://api.nuget.org/v3-flatcontainer/microsoft.netcore.app.host.win-x64/6.0.3/microsoft.netcore.app.host.win-x64.6.0.3.nupkg"; + sha256 = "1y428glba68s76icjzfl1v3p61pcz7rd78wybhabs8zq8w9cp2pj"; }; } { pname = "microsoft.netcore.app.host.win-x86"; - version = "6.0.0"; + version = "6.0.3"; src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/microsoft.netcore.app.host.win-x86/6.0.0/microsoft.netcore.app.host.win-x86.6.0.0.nupkg"; - sha256 = "19fyd762mhgjw6zr65hms0gi32pg0iinsrzz88i00n75y6cmyg36"; + url = "https://api.nuget.org/v3-flatcontainer/microsoft.netcore.app.host.win-x86/6.0.3/microsoft.netcore.app.host.win-x86.6.0.3.nupkg"; + sha256 = "0byyxiv8253zgymn0vwz8zxyasmhdwj891gxg3ydgnc2qf23f16g"; }; } { pname = "microsoft.netcore.app.runtime.win-arm64"; - version = "6.0.0"; + version = "6.0.3"; src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/microsoft.netcore.app.runtime.win-arm64/6.0.0/microsoft.netcore.app.runtime.win-arm64.6.0.0.nupkg"; - sha256 = "0jd3h6q09v4wfam9dbl6yfkjy6b7y1wn87gqv2gzf088q9hfc1mc"; + url = "https://api.nuget.org/v3-flatcontainer/microsoft.netcore.app.runtime.win-arm64/6.0.3/microsoft.netcore.app.runtime.win-arm64.6.0.3.nupkg"; + sha256 = "022kld62v6npxx27mvllg3nv7rpw142q49zwgprzvrxgnn5zszq1"; }; } { pname = "microsoft.netcore.app.runtime.win-x64"; - version = "6.0.0"; + version = "6.0.3"; src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/microsoft.netcore.app.runtime.win-x64/6.0.0/microsoft.netcore.app.runtime.win-x64.6.0.0.nupkg"; - sha256 = "13x1nkigy3nhbr8gxalij7krmzxpciyq4i8k7jdy9278zs1lm5a6"; + url = "https://api.nuget.org/v3-flatcontainer/microsoft.netcore.app.runtime.win-x64/6.0.3/microsoft.netcore.app.runtime.win-x64.6.0.3.nupkg"; + sha256 = "1rjkzs2013razi2xs943q62ys1jh8blhjcnj75qkvirf859d11qw"; }; } { pname = "microsoft.netcore.app.runtime.win-x86"; - version = "6.0.0"; + version = "6.0.3"; src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/microsoft.netcore.app.runtime.win-x86/6.0.0/microsoft.netcore.app.runtime.win-x86.6.0.0.nupkg"; - sha256 = "0p0y3njb618l4ihbsh033jhd8yn1sp8gfhwn722my2166saisjg5"; + url = "https://api.nuget.org/v3-flatcontainer/microsoft.netcore.app.runtime.win-x86/6.0.3/microsoft.netcore.app.runtime.win-x86.6.0.3.nupkg"; + sha256 = "0gsk9939f6vrqbgc7cw8g8q9c7669rkfwwlyhiq13piqmj2kni6g"; }; } { @@ -680,14 +688,6 @@ }; } { - pname = "microsoft.net.stringtools"; - version = "1.0.0"; - src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/microsoft.net.stringtools/1.0.0/microsoft.net.stringtools.1.0.0.nupkg"; - sha256 = "06yakiyzgss399giivfx6xdrnfxqfsvy5fzm90scjanvandv0sdj"; - }; - } - { pname = "microsoft.sourcelink.common"; version = "1.0.0"; src = fetchurl { @@ -1320,38 +1320,6 @@ }; } { - pname = "runtime.win10-arm64.runtime.native.system.io.compression"; - version = "4.3.0"; - src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/runtime.win10-arm64.runtime.native.system.io.compression/4.3.0/runtime.win10-arm64.runtime.native.system.io.compression.4.3.0.nupkg"; - sha256 = "1jrmrmqscn8cn2n3piar8n85gfsra7vlai23w9ldzprh0y4dw3v1"; - }; - } - { - pname = "runtime.win7.system.private.uri"; - version = "4.3.0"; - src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/runtime.win7.system.private.uri/4.3.0/runtime.win7.system.private.uri.4.3.0.nupkg"; - sha256 = "0bxkcmklp556dc43bra8ngc8wymcbbflcydi0xwq0j22gm66xf2m"; - }; - } - { - pname = "runtime.win7-x64.runtime.native.system.io.compression"; - version = "4.3.0"; - src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/runtime.win7-x64.runtime.native.system.io.compression/4.3.0/runtime.win7-x64.runtime.native.system.io.compression.4.3.0.nupkg"; - sha256 = "1dmbmksnxg12fk2p0k7rzy16448mddr2sfrnqs0rhhrzl0z22zi5"; - }; - } - { - pname = "runtime.win7-x86.runtime.native.system.io.compression"; - version = "4.3.0"; - src = fetchurl { - url = "https://api.nuget.org/v3-flatcontainer/runtime.win7-x86.runtime.native.system.io.compression/4.3.0/runtime.win7-x86.runtime.native.system.io.compression.4.3.0.nupkg"; - sha256 = "08ppln62lcq3bz2kyxqyvh98payd5a7w8fzmb53mznkcfv32n55b"; - }; - } - { pname = "runtime.win.microsoft.win32.primitives"; version = "4.3.0"; src = fetchurl { @@ -1408,6 +1376,38 @@ }; } { + pname = "runtime.win10-arm64.runtime.native.system.io.compression"; + version = "4.3.0"; + src = fetchurl { + url = "https://api.nuget.org/v3-flatcontainer/runtime.win10-arm64.runtime.native.system.io.compression/4.3.0/runtime.win10-arm64.runtime.native.system.io.compression.4.3.0.nupkg"; + sha256 = "1jrmrmqscn8cn2n3piar8n85gfsra7vlai23w9ldzprh0y4dw3v1"; + }; + } + { + pname = "runtime.win7-x64.runtime.native.system.io.compression"; + version = "4.3.0"; + src = fetchurl { + url = "https://api.nuget.org/v3-flatcontainer/runtime.win7-x64.runtime.native.system.io.compression/4.3.0/runtime.win7-x64.runtime.native.system.io.compression.4.3.0.nupkg"; + sha256 = "1dmbmksnxg12fk2p0k7rzy16448mddr2sfrnqs0rhhrzl0z22zi5"; + }; + } + { + pname = "runtime.win7-x86.runtime.native.system.io.compression"; + version = "4.3.0"; + src = fetchurl { + url = "https://api.nuget.org/v3-flatcontainer/runtime.win7-x86.runtime.native.system.io.compression/4.3.0/runtime.win7-x86.runtime.native.system.io.compression.4.3.0.nupkg"; + sha256 = "08ppln62lcq3bz2kyxqyvh98payd5a7w8fzmb53mznkcfv32n55b"; + }; + } + { + pname = "runtime.win7.system.private.uri"; + version = "4.3.0"; + src = fetchurl { + url = "https://api.nuget.org/v3-flatcontainer/runtime.win7.system.private.uri/4.3.0/runtime.win7.system.private.uri.4.3.0.nupkg"; + sha256 = "0bxkcmklp556dc43bra8ngc8wymcbbflcydi0xwq0j22gm66xf2m"; + }; + } + { pname = "sqlitepclraw.bundle_green"; version = "2.0.4"; src = fetchurl { diff --git a/pkgs/development/tools/operator-sdk/default.nix b/pkgs/development/tools/operator-sdk/default.nix index 0cad5686422..fabc6e5ac4b 100644 --- a/pkgs/development/tools/operator-sdk/default.nix +++ b/pkgs/development/tools/operator-sdk/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "operator-sdk"; - version = "1.18.0"; + version = "1.18.1"; src = fetchFromGitHub { owner = "operator-framework"; repo = pname; rev = "v${version}"; - sha256 = "sha256-TamtjFnh+HT7JHcRTEpALdkXM9MyZGulb644bNr/BQI="; + sha256 = "sha256-BusShYGgaUGwLMWr/EHS7kDUTnTJyHzWUztlaMJskAg="; }; - vendorSha256 = "sha256-uci8/gQqLtjmxxqSlpgZhgBnvMotMvklNfwR+ua8H3M="; + vendorSha256 = "sha256-VH2ALKSr+UFk26Y5/1yhLP//wc1t8f9O5dMg0RGz4ZM="; doCheck = false; diff --git a/pkgs/development/tools/parsing/flex/default.nix b/pkgs/development/tools/parsing/flex/default.nix index 58f0bb54fb1..8991c1419f2 100644 --- a/pkgs/development/tools/parsing/flex/default.nix +++ b/pkgs/development/tools/parsing/flex/default.nix @@ -47,6 +47,10 @@ stdenv.mkDerivation rec { dontDisableStatic = stdenv.buildPlatform != stdenv.hostPlatform; + postInstall = '' + ln -s $out/bin/flex $out/bin/lex + ''; + meta = with lib; { homepage = "https://github.com/westes/flex"; description = "A fast lexical analyser generator"; diff --git a/pkgs/development/tools/parsing/tree-sitter/default.nix b/pkgs/development/tools/parsing/tree-sitter/default.nix index 484254a099c..c077913b1eb 100644 --- a/pkgs/development/tools/parsing/tree-sitter/default.nix +++ b/pkgs/development/tools/parsing/tree-sitter/default.nix @@ -95,7 +95,7 @@ let (lib.strings.replaceStrings [ "-" ] [ "_" ] (lib.strings.removePrefix "tree-sitter-" (lib.strings.removeSuffix "-grammar" name))) - + stdenv.hostPlatform.extensions.sharedLibrary; + + ".so"; path = "${drv}/parser"; } ) diff --git a/pkgs/development/tools/pulumictl/default.nix b/pkgs/development/tools/pulumictl/default.nix index b9538235c46..baa9734d340 100644 --- a/pkgs/development/tools/pulumictl/default.nix +++ b/pkgs/development/tools/pulumictl/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "pulumictl"; - version = "0.0.29"; + version = "0.0.30"; src = fetchFromGitHub { owner = "pulumi"; repo = "pulumictl"; rev = "v${version}"; - sha256 = "sha256-2jTxtgEg+x/NY/LTWT5+9K9bilOw2bLTUIctjd+qwLE="; + sha256 = "sha256-xAlc6dYD73JZqV0QDhvqPmtGF99mqhvdBbDhWlY/4PI="; }; vendorSha256 = "sha256-xalfnLc6bPBvm2B42+FzpgrOH541HMWmNHChveI792s="; diff --git a/pkgs/development/tools/rust/cargo-crev/default.nix b/pkgs/development/tools/rust/cargo-crev/default.nix index 9fc89ece06d..90ea1658271 100644 --- a/pkgs/development/tools/rust/cargo-crev/default.nix +++ b/pkgs/development/tools/rust/cargo-crev/default.nix @@ -13,16 +13,16 @@ rustPlatform.buildRustPackage rec { pname = "cargo-crev"; - version = "0.23.0"; + version = "0.23.1"; src = fetchFromGitHub { owner = "crev-dev"; repo = "cargo-crev"; rev = "v${version}"; - sha256 = "sha256-iqFE3sz7cIFcd9zCFjU1PjMWVmxCRcdiiGAbirWUWMA="; + sha256 = "sha256-XzjZEVyPVn+7VrjG4QsqVBFmuGC1TWTWLEoqFcwQhaI="; }; - cargoSha256 = "sha256-qlqW5phw7QI5KT2uUamQFEYHZd4uzYaUuvZTG3KhrOU="; + cargoSha256 = "sha256-p87ZnOxaF9ytSUxp0P3QE3K1/jo7hz/N7BH1f2Lc0I0="; preCheck = '' export HOME=$(mktemp -d) diff --git a/pkgs/development/tools/rust/cargo-insta/default.nix b/pkgs/development/tools/rust/cargo-insta/default.nix index 93593a01f5e..727e9b38c05 100644 --- a/pkgs/development/tools/rust/cargo-insta/default.nix +++ b/pkgs/development/tools/rust/cargo-insta/default.nix @@ -2,17 +2,17 @@ rustPlatform.buildRustPackage rec { pname = "cargo-insta"; - version = "1.11.0"; + version = "1.13.0"; src = fetchFromGitHub { owner = "mitsuhiko"; repo = "insta"; rev = version; - sha256 = "sha256-Vi3FwetCpL8qMniaXypw1EYVHh6lfZu6GjDXPDKda5c="; + sha256 = "sha256-cSQEwsUqn+Q0ZWndBVatHL0btO7xLOJWO+MMjtSL0Zo="; }; sourceRoot = "source/cargo-insta"; - cargoSha256 = "sha256-Bjh9we0OD8kqMJtovO1yw9Yta5u93dlYMRsxPdErkaY="; + cargoSha256 = "sha256-rn4ln/MeaDAQmWpxeTn3mGH4sEvO4876o1VPYiz/CR8="; buildInputs = lib.optionals stdenv.isDarwin [ libiconv ]; meta = with lib; { diff --git a/pkgs/development/tools/rust/cargo-nextest/default.nix b/pkgs/development/tools/rust/cargo-nextest/default.nix new file mode 100644 index 00000000000..54d568726dd --- /dev/null +++ b/pkgs/development/tools/rust/cargo-nextest/default.nix @@ -0,0 +1,29 @@ +{ lib, fetchFromGitHub, rustPlatform, stdenv, libiconv }: + +rustPlatform.buildRustPackage rec { + pname = "cargo-nextest"; + version = "0.9.10"; + + src = fetchFromGitHub { + owner = "nextest-rs"; + repo = "nextest"; + rev = "cargo-nextest-${version}"; + sha256 = "0gbh990dd4514bfqh4x2nymh5w608ljp3s7akq100m4v723b6339"; + }; + + cargoSha256 = "0c0i274dkz3jx9dzcxl9hyf3imiga8vb6m6jc5z1f1wdq3vknh9r"; + + cargoTestFlags = [ # TODO: investigate some more why these tests fail in nix + "--" + "--skip=tests_integration::test_relocated_run" + "--skip=tests_integration::test_run" + "--skip=tests_integration::test_run_after_build" + ]; + + meta = with lib; { + description = "Next-generation test runner for Rust projects"; + homepage = "https://github.com/nextest-rs/nextest"; + license = with licenses; [ mit asl20 ]; + maintainers = [ maintainers.ekleog ]; + }; +} diff --git a/pkgs/development/tools/rust/rust-analyzer/default.nix b/pkgs/development/tools/rust/rust-analyzer/default.nix index 2221ae0a14b..f155fdbaf78 100644 --- a/pkgs/development/tools/rust/rust-analyzer/default.nix +++ b/pkgs/development/tools/rust/rust-analyzer/default.nix @@ -11,14 +11,14 @@ rustPlatform.buildRustPackage rec { pname = "rust-analyzer-unwrapped"; - version = "2022-02-28"; - cargoSha256 = "sha256-dTw6xp99uGtGp6YuqAX3r3GDD6Wto3KHTaO2DUUE2FA="; + version = "2022-03-07"; + cargoSha256 = "sha256-geMzdo5frW5VkuTwBHKHXCTJZrHDUIRSTs2kkCfA5Vc="; src = fetchFromGitHub { owner = "rust-analyzer"; repo = "rust-analyzer"; rev = version; - sha256 = "sha256-GQ1cPO4povnozLl0MTFs0ZXpmBn+AZeFWQVnxHHWf9g="; + sha256 = "sha256-/qKh4utesAjlyG8A3hEmSx+HBgh48Uje6ZRtUGz5f0g="; }; patches = [ diff --git a/pkgs/development/tools/sentry-cli/default.nix b/pkgs/development/tools/sentry-cli/default.nix index 2d20beb2eb9..2fb0f1ebbeb 100644 --- a/pkgs/development/tools/sentry-cli/default.nix +++ b/pkgs/development/tools/sentry-cli/default.nix @@ -9,13 +9,13 @@ }: rustPlatform.buildRustPackage rec { pname = "sentry-cli"; - version = "1.73.0"; + version = "1.74.2"; src = fetchFromGitHub { owner = "getsentry"; repo = "sentry-cli"; rev = version; - sha256 = "sha256-wnpC/LVhGOXWaa198bcahjdXRVuh1Xv0tFe2BCfOnNE="; + sha256 = "sha256-1A/c5HiXtT6xUTxVInv9DbbCsqpu8iCJ7I0A9wFeaQ0="; }; doCheck = false; @@ -25,7 +25,7 @@ rustPlatform.buildRustPackage rec { buildInputs = [ openssl ] ++ lib.optionals stdenv.isDarwin [ Security SystemConfiguration ]; nativeBuildInputs = [ pkg-config ]; - cargoSha256 = "sha256-7mjAKuiFcNzjt8Ti5/50TmPy3LY6dwXuQCHtbcoVZm8="; + cargoSha256 = "sha256-z++t+Zt40az11z/xhobvvbbSNUBpnMzqlRzoOuYgY2U="; meta = with lib; { homepage = "https://docs.sentry.io/cli/"; diff --git a/pkgs/development/tools/shellharden/default.nix b/pkgs/development/tools/shellharden/default.nix index d444a3685c5..ee56e58f6ca 100644 --- a/pkgs/development/tools/shellharden/default.nix +++ b/pkgs/development/tools/shellharden/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "shellharden"; - version = "4.1.3"; + version = "4.2.0"; src = fetchFromGitHub { owner = "anordal"; repo = pname; rev = "v${version}"; - sha256 = "04pgmkaqjb1lmlwjjipcrqh9qcyjjkr39vi3h5fl9sr71c8g7dnd"; + sha256 = "081b51h88hhyzn9vb9pcszz1wfdj73xwsyfn2ygz708kabzqpvdl"; }; - cargoSha256 = "0bjqgw49msl288yfa7bl31bfa9kdy4zh1q3j0lyw4vvkv2r14pf5"; + cargoSha256 = "1gwlmds417szwvywvm19wv60a83inp52sf46sd05x5vahb8gv8hg"; postPatch = "patchShebangs moduletests/run"; diff --git a/pkgs/development/tools/stylua/default.nix b/pkgs/development/tools/stylua/default.nix index 1b25634502a..e21f058b8a0 100644 --- a/pkgs/development/tools/stylua/default.nix +++ b/pkgs/development/tools/stylua/default.nix @@ -7,16 +7,16 @@ rustPlatform.buildRustPackage rec { pname = "stylua"; - version = "0.12.4"; + version = "0.12.5"; src = fetchFromGitHub { owner = "johnnymorganz"; repo = pname; rev = "v${version}"; - sha256 = "sha256-BPLN7/LaVDtCOJBgIJVbnENUyFtacRsK3JxDupytzOA="; + sha256 = "sha256-4tQQTTAdIAhlkBJevwwwGXOKd6bJJOyG4nlbCv7909Y="; }; - cargoSha256 = "sha256-MZsFbFQp5Rw20pXzvTFNhMiVx/TJZ63/2rU7vj7IcqQ="; + cargoSha256 = "sha256-DGe2lB8xZgY9ikTsIHDOdHzTyHfDaSlmy8FU/S9FDCI="; buildFeatures = lib.optional lua52Support "lua52" ++ lib.optional luauSupport "luau"; diff --git a/pkgs/development/tools/symfony-cli/default.nix b/pkgs/development/tools/symfony-cli/default.nix index d87ecddbf89..ebb07ec2b49 100644 --- a/pkgs/development/tools/symfony-cli/default.nix +++ b/pkgs/development/tools/symfony-cli/default.nix @@ -2,14 +2,14 @@ buildGoModule rec { pname = "symfony-cli"; - version = "5.4.1"; + version = "5.4.2"; vendorSha256 = "sha256-MlsgII1QybyW+B7DGbSyn7VQ36n29yOC0pZnaemEHO8="; src = fetchFromGitHub { owner = "symfony-cli"; repo = "symfony-cli"; rev = "v${version}"; - sha256 = "sha256-92Pth+IrILWkcP4mm3IcSN4+zs7TNg4CPGT2liop7/I="; + sha256 = "sha256-Ci523YoocpCexbXMg3PjQ/x8z/STWt+nro64l+ckKzM="; }; # Tests requires network access diff --git a/pkgs/development/tools/tokio-console/default.nix b/pkgs/development/tools/tokio-console/default.nix index f04de27f1c2..6ff132e8146 100644 --- a/pkgs/development/tools/tokio-console/default.nix +++ b/pkgs/development/tools/tokio-console/default.nix @@ -6,16 +6,16 @@ rustPlatform.buildRustPackage rec { pname = "tokio-console"; - version = "0.1.0"; + version = "0.1.3"; src = fetchFromGitHub { owner = "tokio-rs"; repo = "console"; rev = "tokio-console-v${version}"; - sha256 = "sha256-1wxRTdDmgTlGJ3W1txDA/3Rnccs3KBw55vprrGaVnkg="; + sha256 = "sha256-v9BxfBLRJug/1AgvDV7P5AOXwZfCu1mNgJjhbipoZNg="; }; - cargoSha256 = "sha256-RScu5V55OowwWHi3MLjW8DPlTMA/IEBYFt4VUDUHPKo="; + cargoSha256 = "sha256-584EC9x7tJE3pHqgQVh6LWKuCgLXuBBEnaPvo1A8RIs="; nativeBuildInputs = [ protobuf ]; diff --git a/pkgs/development/tools/toml2json/default.nix b/pkgs/development/tools/toml2json/default.nix new file mode 100644 index 00000000000..0287b75b362 --- /dev/null +++ b/pkgs/development/tools/toml2json/default.nix @@ -0,0 +1,20 @@ +{ lib, rustPlatform, fetchCrate }: + +rustPlatform.buildRustPackage rec { + pname = "toml2json"; + version = "1.3.0"; + + src = fetchCrate { + inherit pname version; + sha256 = "sha256-TxTxKHf5g+mBXDq147T5tuwCqyfyoz6Mj55g1tlgRDY="; + }; + + cargoHash = "sha256-EYp30TMIpzSCkPIqqdc7sGpfaWs9OLi9ey7DoPE4jzI="; + + meta = with lib; { + description = "A very small CLI for converting TOML to JSON"; + homepage = "https://github.com/woodruffw/toml2json"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ rvarago ]; + }; +} diff --git a/pkgs/development/tools/vagrant/gemset_libvirt.nix b/pkgs/development/tools/vagrant/gemset_libvirt.nix index 2d59b4c2cf8..0cec878d304 100644 --- a/pkgs/development/tools/vagrant/gemset_libvirt.nix +++ b/pkgs/development/tools/vagrant/gemset_libvirt.nix @@ -14,10 +14,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1759s0rz6qgsw86dds1z4jzb3fvizqsk11j5q6z7lc5n404w6i23"; + sha256 = "1yff4s5b8wcrk9ldils2k84l46m9nxr0my0wxchzdmgjbjdfsvww"; type = "gem"; }; - version = "0.79.0"; + version = "0.92.0"; }; fog-core = { dependencies = ["builder" "excon" "formatador" "mime-types"]; @@ -25,10 +25,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0bwqm9n69y5y0a5iickr358z7w4hml3flqwfz8b7cnj1ldabhnjn"; + sha256 = "06m6hxq8vspx9h9bgc2s19m56jzasvl45vblrfv1q5h1qg1k6amw"; type = "gem"; }; - version = "2.2.3"; + version = "2.3.0"; }; fog-json = { dependencies = ["fog-core" "multi_json"]; @@ -47,10 +47,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1s62ihwxlwgp84xw32wg6hwcx4422v20c7g7azd0xslb91y1ln1r"; + sha256 = "1s8b3bsajwjyrjs53h0nrfrpzzgi8igsrslprhr6fgl80ig3plld"; type = "gem"; }; - version = "0.8.0"; + version = "0.9.0"; }; fog-xml = { dependencies = ["fog-core" "nokogiri"]; @@ -58,30 +58,30 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "043lwdw2wsi6d55ifk0w3izi5l1d1h0alwyr3fixic7b94kc812n"; + sha256 = "1vyyb2429xqzys39xyk2r3fal80qqn397aj2kqsjrgg2y6m59i41"; type = "gem"; }; - version = "0.1.3"; + version = "0.1.4"; }; formatador = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1gc26phrwlmlqrmz4bagq1wd5b7g64avpx0ghxr9xdxcvmlii0l0"; + sha256 = "1l06bv4avphbdmr1y4g0rqlczr38k6r65b3zghrbj2ynyhm3xqjl"; type = "gem"; }; - version = "0.2.5"; + version = "1.1.0"; }; json = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0lrirj0gw420kw71bjjlqkqhqbrplla61gbv1jzgsz6bv90qr3ci"; + sha256 = "1z9grvjyfz16ag55hg522d3q4dh07hf391sf9s96npc0vfi85xkz"; type = "gem"; }; - version = "2.5.1"; + version = "2.6.1"; }; mime-types = { dependencies = ["mime-types-data"]; @@ -89,30 +89,30 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1zj12l9qk62anvk9bjvandpa6vy4xslil15wl6wlivyf51z773vh"; + sha256 = "0ipw892jbksbxxcrlx9g5ljq60qx47pm24ywgfbyjskbcl78pkvb"; type = "gem"; }; - version = "3.3.1"; + version = "3.4.1"; }; mime-types-data = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1phcq7z0zpipwd7y4fbqmlaqghv07fjjgrx99mwq3z3n0yvy7fmi"; + sha256 = "003gd7mcay800k2q4pb2zn8lwwgci4bhi42v2jvlidm8ksx03i6q"; type = "gem"; }; - version = "3.2021.0225"; + version = "3.2022.0105"; }; mini_portile2 = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1hdbpmamx8js53yk3h8cqy12kgv6ca06k0c9n3pxh6b6cjfs19x7"; + sha256 = "0rapl1sfmfi3bfr68da4ca16yhc0pp93vjwkj7y3rdqrzy3b41hy"; type = "gem"; }; - version = "2.5.0"; + version = "2.8.0"; }; multi_json = { groups = ["default"]; @@ -130,40 +130,50 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0b51df8fwadak075cvi17w0nch6qz1r66564qp29qwfj67j9qp0p"; + sha256 = "1p6b3q411h2mw4dsvhjrp1hh66hha5cm69fqg85vn2lizz71n6xz"; type = "gem"; }; - version = "1.11.2"; + version = "1.13.3"; }; racc = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "178k7r0xn689spviqzhvazzvxfq6fyjldxb3ywjbgipbfi4s8j1g"; + sha256 = "0la56m0z26j3mfn1a9lf2l03qx1xifanndf9p3vx1azf6sqy7v9d"; type = "gem"; }; - version = "1.5.2"; + version = "1.6.0"; + }; + rexml = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "08ximcyfjy94pm1rhcx04ny1vx2sk0x4y185gzn86yfsbzwkng53"; + type = "gem"; + }; + version = "3.2.5"; }; ruby-libvirt = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0d754d6pgdqyq52pl9hp0x38q1vn3vf9nz4nm5gqdj5i4fw7pba6"; + sha256 = "0rnmbfhdz270fky0cm8w1i73gkrnlf3s1hdkm5yxjkdbvapwvjsd"; type = "gem"; }; - version = "0.7.1"; + version = "0.8.0"; }; vagrant-libvirt = { - dependencies = ["fog-core" "fog-libvirt" "nokogiri"]; + dependencies = ["fog-core" "fog-libvirt" "nokogiri" "rexml"]; groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "07j30w23syvzrhznad9dkh1ks4lzxzi7ak2966b7i7wr4kz8x1hp"; + sha256 = "07fhsgqx9iyni41z1lhfmm4wq6cbiyydkmvmib28jbgyznlxjmzv"; type = "gem"; }; - version = "0.4.0"; + version = "0.7.0"; }; } diff --git a/pkgs/development/tools/vendir/default.nix b/pkgs/development/tools/vendir/default.nix index e80bb0f14cd..d6ff0825737 100644 --- a/pkgs/development/tools/vendir/default.nix +++ b/pkgs/development/tools/vendir/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "vendir"; - version = "0.24.0"; + version = "0.26.0"; src = fetchFromGitHub { owner = "vmware-tanzu"; repo = "carvel-vendir"; rev = "v${version}"; - sha256 = "sha256-3l0ezObZK/QEmpBlqSm3R3e4pFM7KUnsxDrzvEYExnk="; + sha256 = "sha256-a/fftMJuN6YnjPP0Gk6bMckoCouwgtxhf23OuyLR5Tk="; }; vendorSha256 = null; diff --git a/pkgs/development/tools/yarn/default.nix b/pkgs/development/tools/yarn/default.nix index 50d29cb4a1d..0e39a714ccd 100644 --- a/pkgs/development/tools/yarn/default.nix +++ b/pkgs/development/tools/yarn/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "yarn"; - version = "1.22.17"; + version = "1.22.18"; src = fetchzip { url = "https://github.com/yarnpkg/yarn/releases/download/v${version}/yarn-v${version}.tar.gz"; - sha256 = "1skzlyv2976bl1063f94422jbjy4ns1nxl622biizq31z4821yvj"; + sha256 = "sha256-gI4v/WPWrNa2i2oct8Ns7bpDzmDCy+c86pGKpNznhh0="; }; buildInputs = [ nodejs ]; diff --git a/pkgs/development/tools/zld/default.nix b/pkgs/development/tools/zld/default.nix new file mode 100644 index 00000000000..408e3308b65 --- /dev/null +++ b/pkgs/development/tools/zld/default.nix @@ -0,0 +1,24 @@ +{ stdenv, lib, fetchzip }: + +stdenv.mkDerivation rec { + pname = "zld"; + version = "1.3.3"; + src = fetchzip { + url = "https://github.com/michaeleisel/zld/releases/download/${version}/zld.zip"; + sha256 = "0qb4l7a4vhpnzkgzhw0jivz40jr5gdhqfyynhbkhn7ryh5s52d1p"; + }; + + installPhase = '' + mkdir -p $out/bin + cp zld $out/bin/ + ''; + + meta = with lib; { + description = "A faster version of Apple's linker"; + homepage = "https://github.com/michaeleisel/zld"; + license = licenses.mit; + maintainers = [ maintainers.rgnns ]; + platforms = platforms.darwin; + hydraPlatforms = []; + }; +} diff --git a/pkgs/development/web/flyctl/default.nix b/pkgs/development/web/flyctl/default.nix index 7de71132d6a..89a64edb724 100644 --- a/pkgs/development/web/flyctl/default.nix +++ b/pkgs/development/web/flyctl/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "flyctl"; - version = "0.0.301"; + version = "0.0.302"; src = fetchFromGitHub { owner = "superfly"; repo = "flyctl"; rev = "v${version}"; - sha256 = "sha256-UwouKnUfEcYpwtLXxwe93mHzVvj/+72FSQ0OW55oztE="; + sha256 = "sha256-J6djiBT25cLAWWD0ZQBLju8pef0pG6iYRXUm/5nZm+8="; }; preBuild = '' @@ -17,7 +17,7 @@ buildGoModule rec { subPackages = [ "." ]; - vendorSha256 = "sha256-VKX/Wt7CQy3w4Zv51M/IF1RIPpn7nTCL1T6jJ+oxti4="; + vendorSha256 = "sha256-ZtP/NgKCXpShCDe7Is/moCNPX7JmxcYMh47B+IgvY/4="; doCheck = false; diff --git a/pkgs/development/web/nodejs/setup-hook.sh b/pkgs/development/web/nodejs/setup-hook.sh index 18368588c2a..878e0693a1e 100644 --- a/pkgs/development/web/nodejs/setup-hook.sh +++ b/pkgs/development/web/nodejs/setup-hook.sh @@ -1,5 +1,5 @@ addNodePath () { - addToSearchPath NODE_PATH $1/lib/node_modules + addToSearchPath NODE_PATH "$1/lib/node_modules" } addEnvHooks "$hostOffset" addNodePath diff --git a/pkgs/development/web/nodejs/v12.nix b/pkgs/development/web/nodejs/v12.nix index f353fa9bbc6..e2db169bad3 100644 --- a/pkgs/development/web/nodejs/v12.nix +++ b/pkgs/development/web/nodejs/v12.nix @@ -8,7 +8,7 @@ let in buildNodejs { inherit enableNpm; - version = "12.22.10"; - sha256 = "sha256-rUyIkdVKLJu2r0NpVt7q1ZhrlpiwbmxtYW3kKc+1OTo="; + version = "12.22.11"; + sha256 = "sha256-XoHaJv1bH4lxRIOrqmjj2jBFI+QzTHjEm/p6A+541vE="; patches = lib.optional stdenv.isDarwin ./bypass-xcodebuild.diff; } diff --git a/pkgs/development/web/nodejs/v14.nix b/pkgs/development/web/nodejs/v14.nix index 270592d6dc3..e2a65ace381 100644 --- a/pkgs/development/web/nodejs/v14.nix +++ b/pkgs/development/web/nodejs/v14.nix @@ -7,7 +7,7 @@ let in buildNodejs { inherit enableNpm; - version = "14.19.0"; - sha256 = "sha256-6S6EYwDmEXVH036o1b0yJEwZsvzvyznhQgpHY39FAww="; + version = "14.19.1"; + sha256 = "sha256-4a4J3YYas5rwRIO7XA+lTd2CtrFVQ76aJ+pnBKi6ndk="; patches = lib.optional stdenv.isDarwin ./bypass-xcodebuild.diff; } diff --git a/pkgs/development/web/nodejs/v16.nix b/pkgs/development/web/nodejs/v16.nix index 864672b12de..7f3dce2d70c 100644 --- a/pkgs/development/web/nodejs/v16.nix +++ b/pkgs/development/web/nodejs/v16.nix @@ -8,8 +8,8 @@ let in buildNodejs { inherit enableNpm; - version = "16.14.0"; - sha256 = "sha256-BetkGT45H6iiwVnA9gwXGCRxUWX4DGf8q528lE4wxiM="; + version = "16.14.2"; + sha256 = "sha256-6SLiFcxo61+U0z6KC2HiyGO3cxzIYAq5VdOCLakP+NE="; patches = [ ./disable-darwin-v8-system-instrumentation.patch # Fixes node incorrectly building vendored OpenSSL when we want system OpenSSL. diff --git a/pkgs/development/web/nodejs/v17.nix b/pkgs/development/web/nodejs/v17.nix index 9540919b017..20d76246020 100644 --- a/pkgs/development/web/nodejs/v17.nix +++ b/pkgs/development/web/nodejs/v17.nix @@ -1,4 +1,4 @@ -{ callPackage, fetchpatch, python3, enableNpm ? true }: +{ callPackage, python3, enableNpm ? true }: let buildNodejs = callPackage ./nodejs.nix { @@ -7,15 +7,9 @@ let in buildNodejs { inherit enableNpm; - version = "17.5.0"; - sha256 = "sha256-myTmgwV2xX7ja6SDM974vldSMph7Tak5Vot7ifdzzcM="; + version = "17.7.2"; + sha256 = "sha256-OuXnTgsWIoz37faIU1mp0uAZrIQ5BsXgGUjXRvq6Sq8="; patches = [ ./disable-darwin-v8-system-instrumentation.patch - # Fixes node incorrectly building vendored OpenSSL when we want system OpenSSL. - # https://github.com/nodejs/node/pull/40965 - (fetchpatch { - url = "https://github.com/nodejs/node/commit/65119a89586b94b0dd46b45f6d315c9d9f4c9261.patch"; - sha256 = "sha256-dihKYEdK68sQIsnfTRambJ2oZr0htROVbNZlFzSAL+I="; - }) ]; } diff --git a/pkgs/development/web/shopify-cli/Gemfile b/pkgs/development/web/shopify-cli/Gemfile new file mode 100644 index 00000000000..ec10d4a0346 --- /dev/null +++ b/pkgs/development/web/shopify-cli/Gemfile @@ -0,0 +1,2 @@ +source 'https://rubygems.org' +gem 'shopify-cli' diff --git a/pkgs/development/web/shopify-cli/Gemfile.lock b/pkgs/development/web/shopify-cli/Gemfile.lock new file mode 100644 index 00000000000..a137dbdfaa8 --- /dev/null +++ b/pkgs/development/web/shopify-cli/Gemfile.lock @@ -0,0 +1,39 @@ +GEM + remote: https://rubygems.org/ + specs: + ast (2.4.2) + bugsnag (6.24.2) + concurrent-ruby (~> 1.0) + concurrent-ruby (1.1.9) + ffi (1.15.5) + liquid (5.2.0) + listen (3.7.1) + rb-fsevent (~> 0.10, >= 0.10.3) + rb-inotify (~> 0.9, >= 0.9.10) + mini_portile2 (2.8.0) + nokogiri (1.13.3) + mini_portile2 (~> 2.8.0) + racc (~> 1.4) + parser (3.1.1.0) + ast (~> 2.4.1) + racc (1.6.0) + rb-fsevent (0.11.1) + rb-inotify (0.10.1) + ffi (~> 1.0) + shopify-cli (2.14.0) + bugsnag (~> 6.22) + listen (~> 3.7.0) + theme-check (~> 1.10.1) + theme-check (1.10.2) + liquid (>= 5.1.0) + nokogiri (>= 1.12) + parser (~> 3) + +PLATFORMS + ruby + +DEPENDENCIES + shopify-cli + +BUNDLED WITH + 2.2.33 diff --git a/pkgs/development/web/shopify-cli/default.nix b/pkgs/development/web/shopify-cli/default.nix new file mode 100644 index 00000000000..a3ec7ff3f31 --- /dev/null +++ b/pkgs/development/web/shopify-cli/default.nix @@ -0,0 +1,34 @@ +{ stdenv, lib, bundlerEnv, bundlerUpdateScript, makeWrapper, ruby }: + +let + rubyEnv = bundlerEnv { + name = "shopify-cli"; + gemdir = ./.; + }; +in +stdenv.mkDerivation rec { + pname = "shopify-cli"; + version = (import ./gemset.nix).shopify-cli.version; + + nativeBuildInputs = [ makeWrapper ]; + + dontUnpack = true; + + installPhase = '' + mkdir -p $out/bin + makeWrapper ${rubyEnv}/bin/shopify $out/bin/shopify + wrapProgram $out/bin/shopify \ + --prefix PATH : ${lib.makeBinPath [ ruby ]} + ''; + + passthru.updateScript = bundlerUpdateScript "shopify-cli"; + + meta = with lib; { + description = "CLI which helps you build against the Shopify platform faster"; + homepage = "https://github.com/Shopify/shopify-cli"; + license = licenses.mit; + platforms = ruby.meta.platforms; + maintainers = with maintainers; [ onny ]; + }; +} + diff --git a/pkgs/development/web/shopify-cli/gemset.nix b/pkgs/development/web/shopify-cli/gemset.nix new file mode 100644 index 00000000000..1c6d7e89198 --- /dev/null +++ b/pkgs/development/web/shopify-cli/gemset.nix @@ -0,0 +1,149 @@ +{ + ast = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "04nc8x27hlzlrr5c2gn7mar4vdr0apw5xg22wp6m8dx3wqr04a0y"; + type = "gem"; + }; + version = "2.4.2"; + }; + bugsnag = { + dependencies = ["concurrent-ruby"]; + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0vlsqawqy8jn6cy03zcqw944p323zmr2lgadbw00m5r4lqc3bll4"; + type = "gem"; + }; + version = "6.24.2"; + }; + concurrent-ruby = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0nwad3211p7yv9sda31jmbyw6sdafzmdi2i2niaz6f0wk5nq9h0f"; + type = "gem"; + }; + version = "1.1.9"; + }; + ffi = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1862ydmclzy1a0cjbvm8dz7847d9rch495ib0zb64y84d3xd4bkg"; + type = "gem"; + }; + version = "1.15.5"; + }; + liquid = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "16aqzbvhvm254hbl274l4883h38j8wlwkcarmg09c7wzgpi0jnl1"; + type = "gem"; + }; + version = "5.2.0"; + }; + listen = { + dependencies = ["rb-fsevent" "rb-inotify"]; + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0agybr37wpjv3xy4ipcmsvsibgdgphzrwbvcj4vfiykpmakwm01v"; + type = "gem"; + }; + version = "3.7.1"; + }; + mini_portile2 = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0rapl1sfmfi3bfr68da4ca16yhc0pp93vjwkj7y3rdqrzy3b41hy"; + type = "gem"; + }; + version = "2.8.0"; + }; + nokogiri = { + dependencies = ["mini_portile2" "racc"]; + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1p6b3q411h2mw4dsvhjrp1hh66hha5cm69fqg85vn2lizz71n6xz"; + type = "gem"; + }; + version = "1.13.3"; + }; + parser = { + dependencies = ["ast"]; + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0zaghgvva2q4jqbachg8jvpwgbg3w1jqr0d00m8rqciqznjgsw3c"; + type = "gem"; + }; + version = "3.1.1.0"; + }; + racc = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0la56m0z26j3mfn1a9lf2l03qx1xifanndf9p3vx1azf6sqy7v9d"; + type = "gem"; + }; + version = "1.6.0"; + }; + rb-fsevent = { + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "06c50pvxib7wqnv6q0f3n7gzfcrp5chi3sa48hxpkfxc3hhy11fm"; + type = "gem"; + }; + version = "0.11.1"; + }; + rb-inotify = { + dependencies = ["ffi"]; + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "1jm76h8f8hji38z3ggf4bzi8vps6p7sagxn3ab57qc0xyga64005"; + type = "gem"; + }; + version = "0.10.1"; + }; + shopify-cli = { + dependencies = ["bugsnag" "listen" "theme-check"]; + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0fjqahhvmvqvmpfwa337ran9hhn9wk0ylm502qvcy5i4xy5hvd2r"; + type = "gem"; + }; + version = "2.14.0"; + }; + theme-check = { + dependencies = ["liquid" "nokogiri" "parser"]; + groups = ["default"]; + platforms = []; + source = { + remotes = ["https://rubygems.org"]; + sha256 = "0314f49fg354wgqavvipfaf6a03090kqrgv48qvkb0ikhvqawpdr"; + type = "gem"; + }; + version = "1.10.2"; + }; +} diff --git a/pkgs/games/airshipper/default.nix b/pkgs/games/airshipper/default.nix index bc6f2a8dc71..4474d09659e 100644 --- a/pkgs/games/airshipper/default.nix +++ b/pkgs/games/airshipper/default.nix @@ -1,6 +1,7 @@ { lib , rustPlatform , fetchFromGitLab +, fetchpatch , openssl , vulkan-loader , wayland @@ -25,6 +26,14 @@ rustPlatform.buildRustPackage rec { sha256 = "sha256-nOE9ZNHxLEAnMkuBSpxmeq3DxkRIlcoase6AxU+eFug="; }; + patches = [ + # this *should* be merged in time for the release following 0.7.0 + (fetchpatch { + url = "https://github.com/veloren/Airshipper/commit/97fc986ab4cbf59f2c764f647710f19db86031b4.patch"; + hash = "sha256-Sg5et+yP6Z44wV/t9zqKLpg1C0cq6rV+3WrzAH4Za3U="; + }) + ]; + cargoSha256 = "sha256-s3seKVEhXyOVlt3a8cubzRWoB4SVQpdCmq12y0FpDUw="; buildInputs = [ @@ -57,7 +66,8 @@ rustPlatform.buildRustPackage rec { libXi libXcursor ]; - in '' + in + '' patchelf --set-rpath "${libPath}" "$out/bin/airshipper" ''; diff --git a/pkgs/games/gcompris/default.nix b/pkgs/games/gcompris/default.nix index c4c737d228c..5343bae4a6c 100644 --- a/pkgs/games/gcompris/default.nix +++ b/pkgs/games/gcompris/default.nix @@ -18,11 +18,11 @@ mkDerivation rec { pname = "gcompris"; - version = "2.1"; + version = "2.3"; src = fetchurl { - url = "http://gcompris.net/download/qt/src/gcompris-qt-${version}.tar.xz"; - sha256 = "sha256-ljOY/uybXzfwOFmhBXB4sC4Vn/C8BP1BeUUPpdHuQwo="; + url = "https://download.kde.org/stable/gcompris/qt/src/gcompris-qt-${version}.tar.xz"; + sha256 = "sha256-UgWLp5IVqbeFFCO/PRFJ/X1sPm7nSkagVcgEp5SdzGI="; }; cmakeFlags = [ @@ -32,15 +32,24 @@ mkDerivation rec { nativeBuildInputs = [ cmake gettext ninja qttools ]; buildInputs = [ - qmlbox2d qtbase qtdeclarative qtgraphicaleffects qtmultimedia qtquickcontrols qtsensors qtxmlpatterns + qmlbox2d + qtdeclarative + qtgraphicaleffects + qtmultimedia + qtquickcontrols + qtsensors + qtxmlpatterns ] ++ (with gst_all_1; [ - gstreamer gst-plugins-base gst-plugins-good gst-plugins-bad + gstreamer + gst-plugins-base + gst-plugins-good + gst-plugins-bad ]); postInstall = '' - install -Dm444 ../org.kde.gcompris.desktop $out/share/applications/gcompris.desktop - install -Dm444 ../images/256-apps-gcompris-qt.png $out/share/icons/hicolor/256x256/apps/gcompris-qt.png + install -Dm444 ../org.kde.gcompris.desktop -t $out/share/applications install -Dm444 ../org.kde.gcompris.appdata.xml -t $out/share/metainfo + install -Dm444 ../images/256-apps-gcompris-qt.png $out/share/icons/hicolor/256x256/apps/gcompris-qt.png qtWrapperArgs+=(--prefix GST_PLUGIN_SYSTEM_PATH_1_0 : "$GST_PLUGIN_SYSTEM_PATH_1_0") ''; @@ -49,6 +58,7 @@ mkDerivation rec { description = "A high quality educational software suite, including a large number of activities for children aged 2 to 10"; homepage = "https://gcompris.net/"; license = licenses.gpl3Plus; + mainProgram = "gcompris-qt"; maintainers = with maintainers; [ guibou ]; platforms = platforms.linux; }; diff --git a/pkgs/misc/cups/default.nix b/pkgs/misc/cups/default.nix index 2d0129e21c5..af43c55072c 100644 --- a/pkgs/misc/cups/default.nix +++ b/pkgs/misc/cups/default.nix @@ -26,14 +26,14 @@ stdenv.mkDerivation rec { pname = "cups"; # After 2.2.6, CUPS requires headers only available in macOS 10.12+ - version = if stdenv.isDarwin then "2.2.6" else "2.4.0"; + version = if stdenv.isDarwin then "2.2.6" else "2.4.1"; src = fetchurl (if stdenv.isDarwin then { url = "https://github.com/apple/cups/releases/download/v${version}/cups-${version}-source.tar.gz"; sha256 = "16qn41b84xz6khrr2pa2wdwlqxr29rrrkjfi618gbgdkq9w5ff20"; } else { url = "https://github.com/OpenPrinting/cups/releases/download/v${version}/cups-${version}-source.tar.gz"; - sha256 = "1pm6lf08z8vgs62g5b5rjw32qy3vr0q3sgidpg2lfs6a530wxgls"; + sha256 = "sha256-xzOfdfjU8t7FDGczQaRfwGtohbttQ2bWv1mk5sEK4Xg="; }); outputs = [ "out" "lib" "dev" "man" ]; diff --git a/pkgs/misc/logging/pacemaker/default.nix b/pkgs/misc/logging/pacemaker/default.nix new file mode 100644 index 00000000000..07194380d4a --- /dev/null +++ b/pkgs/misc/logging/pacemaker/default.nix @@ -0,0 +1,102 @@ +{ lib +, stdenv +, autoconf +, automake +, bash +, bzip2 +, corosync +, dbus +, fetchFromGitHub +, glib +, gnutls +, libqb +, libtool +, libuuid +, libxml2 +, libxslt +, pam +, pkg-config +, python3 +, nixosTests + +# Pacemaker is compiled twice, once with forOCF = true to extract its +# OCF definitions for use in the ocf-resource-agents derivation, then +# again with forOCF = false, where the ocf-resource-agents is provided +# as the OCF_ROOT. +, forOCF ? false +, ocf-resource-agents +} : + +stdenv.mkDerivation rec { + pname = "pacemaker"; + version = "2.1.2"; + + src = fetchFromGitHub { + owner = "ClusterLabs"; + repo = pname; + rev = "Pacemaker-${version}"; + sha256 = "1w7vq3lmgcz38pfww9vccm142vjsjqz3qc9nnk09ynkx4agqhxdg"; + }; + + nativeBuildInputs = [ + autoconf + automake + libtool + pkg-config + ]; + + buildInputs = [ + bash + bzip2 + corosync + dbus.dev + glib + gnutls + libqb + libuuid + libxml2.dev + libxslt.dev + pam + python3 + ]; + + preConfigure = '' + ./autogen.sh --prefix="$out" + ''; + configureFlags = [ + "--exec-prefix=${placeholder "out"}" + "--sysconfdir=/etc" + "--localstatedir=/var" + "--with-initdir=/etc/systemd/system" + "--with-systemdsystemunitdir=/etc/systemd/system" + "--with-corosync" + # allows Type=notify in the systemd service + "--enable-systemd" + ] ++ lib.optional (!forOCF) "--with-ocfdir=${ocf-resource-agents}/usr/lib/ocf"; + + installFlags = [ "DESTDIR=${placeholder "out"}" ]; + + NIX_CFLAGS_COMPILE = lib.optionals stdenv.cc.isGNU [ + "-Wno-error=strict-prototypes" + ]; + + enableParallelBuilding = true; + + postInstall = '' + # pacemaker's install linking requires a weirdly nested hierarchy + mv $out$out/* $out + rm -r $out/nix + ''; + + passthru.tests = { + inherit (nixosTests) pacemaker; + }; + + meta = with lib; { + homepage = "https://clusterlabs.org/pacemaker/"; + description = "Pacemaker is an open source, high availability resource manager suitable for both small and large clusters."; + license = licenses.gpl2Plus; + platforms = platforms.linux; + maintainers = with maintainers; [ ryantm astro ]; + }; +} diff --git a/pkgs/misc/openrussian-cli/default.nix b/pkgs/misc/openrussian-cli/default.nix index 24c0b6bece7..4f30fd91896 100644 --- a/pkgs/misc/openrussian-cli/default.nix +++ b/pkgs/misc/openrussian-cli/default.nix @@ -1,6 +1,9 @@ { stdenv, lib, fetchFromGitHub, gnumake, pkg-config, wget, unzip, gawk -, sqlite, which, luaPackages, installShellFiles, makeWrapper +, sqlite, which, lua, installShellFiles, makeWrapper }: +let + luaEnv = lua.withPackages(p: with p; [ luasql-sqlite3 luautf8 ]); +in stdenv.mkDerivation rec { pname = "openrussian-cli"; version = "1.0.0"; @@ -16,11 +19,11 @@ stdenv.mkDerivation rec { gnumake pkg-config wget unzip gawk sqlite which installShellFiles makeWrapper ]; - buildInputs = with luaPackages; [ lua luasql-sqlite3 luautf8 ]; + buildInputs = [ luaEnv ]; makeFlags = [ - "LUA=${luaPackages.lua}/bin/lua" - "LUAC=${luaPackages.lua}/bin/luac" + "LUA=${luaEnv}/bin/lua" + "LUAC=${luaEnv}/bin/luac" ]; dontConfigure = true; @@ -34,8 +37,8 @@ stdenv.mkDerivation rec { cp openrussian $out/bin wrapProgram $out/bin/openrussian \ - --prefix LUA_PATH ';' "$LUA_PATH" \ - --prefix LUA_CPATH ';' "$LUA_CPATH" + --prefix LUA_PATH ';' '${lua.pkgs.lib.genLuaPathAbsStr luaEnv}' \ + --prefix LUA_CPATH ';' '${lua.pkgs.lib.genLuaCPathAbsStr luaEnv}' runHook postInstall ''; diff --git a/pkgs/misc/screensavers/xlockmore/default.nix b/pkgs/misc/screensavers/xlockmore/default.nix index 8d6b5eba5bf..ac739d6a0db 100644 --- a/pkgs/misc/screensavers/xlockmore/default.nix +++ b/pkgs/misc/screensavers/xlockmore/default.nix @@ -3,11 +3,11 @@ stdenv.mkDerivation rec { pname = "xlockmore"; - version = "5.68"; + version = "5.69"; src = fetchurl { url = "http://sillycycle.com/xlock/xlockmore-${version}.tar.xz"; - sha256 = "sha256-MHMf3LID8W61wcQ8BdQuRSrQ60VVyXxVVmpuyxh3zW4="; + sha256 = "sha256-6pJlTAASJoSHZaJRpzvLxHPM7xe3IcwY1TYfWdvW07k="; curlOpts = "--user-agent 'Mozilla/5.0'"; }; diff --git a/pkgs/os-specific/linux/audit/default.nix b/pkgs/os-specific/linux/audit/default.nix index 9fd24eea6d9..e9762f44dcd 100644 --- a/pkgs/os-specific/linux/audit/default.nix +++ b/pkgs/os-specific/linux/audit/default.nix @@ -3,11 +3,13 @@ runCommand, autoreconfHook, autoconf, automake, libtool, - enablePython ? false, python ? null, + # Enabling python support while cross compiling would be possible, but + # the configure script tries executing python to gather info instead of + # relying on python3-config exclusively + enablePython ? stdenv.hostPlatform == stdenv.buildPlatform, python3, swig, + linuxHeaders ? stdenv.cc.libc.linuxHeaders }: -assert enablePython -> python != null; - stdenv.mkDerivation rec { pname = "audit"; version = "2.8.5"; # at the next release, remove the patches below! @@ -21,7 +23,7 @@ stdenv.mkDerivation rec { depsBuildBuild = [ buildPackages.stdenv.cc ]; nativeBuildInputs = [ autoreconfHook ]; - buildInputs = lib.optional enablePython python; + buildInputs = lib.optionals enablePython [ python3 swig ]; configureFlags = [ # z/OS plugin is not useful on Linux, @@ -69,8 +71,11 @@ stdenv.mkDerivation rec { }) ]; - prePatch = '' + postPatch = '' sed -i 's,#include <sys/poll.h>,#include <poll.h>\n#include <limits.h>,' audisp/audispd.c + substituteInPlace bindings/swig/src/auditswig.i \ + --replace "/usr/include/linux/audit.h" \ + "${linuxHeaders}/include/linux/audit.h" '' # According to https://stackoverflow.com/questions/13089166 # --whole-archive linker flag is required to be sure that linker diff --git a/pkgs/os-specific/linux/bluez/default.nix b/pkgs/os-specific/linux/bluez/default.nix index 5e81cf6b2c1..fb75b99f03d 100644 --- a/pkgs/os-specific/linux/bluez/default.nix +++ b/pkgs/os-specific/linux/bluez/default.nix @@ -22,11 +22,11 @@ ]; in stdenv.mkDerivation rec { pname = "bluez"; - version = "5.62"; + version = "5.63"; src = fetchurl { url = "mirror://kernel/linux/bluetooth/${pname}-${version}.tar.xz"; - sha256 = "sha256-OAkKW3UOF/wI0+UheO2NMlTF9L0sSIMNXBlVuI47wMI="; + sha256 = "sha256-k0nhHoFguz1yCDXScSUNinQk02kPUonm22/gfMZsbXY="; }; buildInputs = [ diff --git a/pkgs/os-specific/linux/kernel/common-config.nix b/pkgs/os-specific/linux/kernel/common-config.nix index 671fdef2f5d..068aedf3121 100644 --- a/pkgs/os-specific/linux/kernel/common-config.nix +++ b/pkgs/os-specific/linux/kernel/common-config.nix @@ -218,6 +218,11 @@ let # Kernel TLS TLS = whenAtLeast "4.13" module; TLS_DEVICE = whenAtLeast "4.18" yes; + + # infiniband + INFINIBAND = module; + INFINIBAND_IPOIB = module; + INFINIBAND_IPOIB_CM = yes; }; wireless = { @@ -719,7 +724,12 @@ let HID_ACRUX_FF = yes; DRAGONRISE_FF = yes; + GREENASIA_FF = yes; HOLTEK_FF = yes; + JOYSTICK_PSXPAD_SPI_FF = whenAtLeast "4.14" yes; + LOGIG940_FF = yes; + NINTENDO_FF = whenAtLeast "5.16" yes; + PLAYSTATION_FF = whenAtLeast "5.12" yes; SONY_FF = yes; SMARTJOYPLUS_FF = yes; THRUSTMASTER_FF = yes; diff --git a/pkgs/os-specific/linux/kernel/linux-4.14.nix b/pkgs/os-specific/linux/kernel/linux-4.14.nix index e31d1035857..9daf9c4bd19 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.14.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.14.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "4.14.271"; + version = "4.14.272"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "1mzxcjzw6y7b3fffz0hbgsl6328w3m5yv5xb21z57kr9vm828y80"; + sha256 = "0scx13pc5y5jmm5xa17my242gsgb1mf0cgqzjx656g7kkh4phqcv"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.19.nix b/pkgs/os-specific/linux/kernel/linux-4.19.nix index 1ea6bedc003..c4bd2f8fc5d 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.19.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.19.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "4.19.234"; + version = "4.19.235"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "12rd468wvmmdmgzy9vs2ny155yp9wxrf15lrslpc8xm4wimrd0h0"; + sha256 = "1615y3ma9icmqqr7lisl8nd8zvvkh77a81yl39yvy6qi9345l32k"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-4.9.nix b/pkgs/os-specific/linux/kernel/linux-4.9.nix index df73833dc8e..9eae11205ca 100644 --- a/pkgs/os-specific/linux/kernel/linux-4.9.nix +++ b/pkgs/os-specific/linux/kernel/linux-4.9.nix @@ -1,12 +1,12 @@ { buildPackages, fetchurl, perl, buildLinux, nixosTests, stdenv, ... } @ args: buildLinux (args // rec { - version = "4.9.306"; + version = "4.9.307"; extraMeta.branch = "4.9"; extraMeta.broken = stdenv.isAarch64; src = fetchurl { url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz"; - sha256 = "1cvsz3sf24g2623m7fxc6ilzsdmzi8s8lnks3sg68sax0qdx0ny7"; + sha256 = "1xyhz7hq8yyclxyavzk36sbl41vlb74pccd56240kq34ma1hyis7"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-5.10.nix b/pkgs/os-specific/linux/kernel/linux-5.10.nix index 3b59a11e3c1..dec0ebb154a 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.10.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.10.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.10.105"; + version = "5.10.106"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "11fb9y6sqrf0hvak83ym7sbbacjl3q51w523vxjdpjmrn850xp1x"; + sha256 = "0yjrlghcxw3lhd6nc2m4zy4gk536w3a3w6mxdsml690fqz4531n6"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-5.15.nix b/pkgs/os-specific/linux/kernel/linux-5.15.nix index 76e624f8969..7b76ab0c8a5 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.15.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.15.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.15.28"; + version = "5.15.29"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -15,6 +15,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "1rhhn2a7799nnvx8dj83glb0p0qakxanhxvvl7crznvip7rvp8nq"; + sha256 = "0vl7xm4xs59z071wfjna392yada3hg5h6h3dfjaswircc22fc1ar"; }; } // (args.argsOverride or { })) diff --git a/pkgs/os-specific/linux/kernel/linux-5.16.nix b/pkgs/os-specific/linux/kernel/linux-5.16.nix index 94b61a1ba93..1fadc0d420e 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.16.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.16.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.16.14"; + version = "5.16.15"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "1xkl0mfjby7w6r3fqyjds94h2lmc77nzp970w7wz1rfmb63ab2vs"; + sha256 = "1mi41npkk1inqchm3yp14xmzc5lrp50d7vbpazwxwq5kw04c8c4g"; }; } // (args.argsOverride or { })) diff --git a/pkgs/os-specific/linux/kernel/linux-5.4.nix b/pkgs/os-specific/linux/kernel/linux-5.4.nix index ae2fecf9613..c234b4f898c 100644 --- a/pkgs/os-specific/linux/kernel/linux-5.4.nix +++ b/pkgs/os-specific/linux/kernel/linux-5.4.nix @@ -3,7 +3,7 @@ with lib; buildLinux (args // rec { - version = "5.4.184"; + version = "5.4.185"; # modDirVersion needs to be x.y.z, will automatically add .0 if needed modDirVersion = if (modDirVersionArg == null) then concatStringsSep "." (take 3 (splitVersion "${version}.0")) else modDirVersionArg; @@ -13,6 +13,6 @@ buildLinux (args // rec { src = fetchurl { url = "mirror://kernel/linux/kernel/v5.x/linux-${version}.tar.xz"; - sha256 = "128laiqkr6z3pya8ws7r2ddrpbc3xyn80zwclz2wlrf6wqwwm546"; + sha256 = "11rp3x05bq9cs9gwy4x36ynkgl7nb5ss29zi6m7n5ywvczdfjpyi"; }; } // (args.argsOverride or {})) diff --git a/pkgs/os-specific/linux/kernel/linux-libre.nix b/pkgs/os-specific/linux/kernel/linux-libre.nix index 288ba1b7214..8c4dc41e8f5 100644 --- a/pkgs/os-specific/linux/kernel/linux-libre.nix +++ b/pkgs/os-specific/linux/kernel/linux-libre.nix @@ -1,8 +1,8 @@ { stdenv, lib, fetchsvn, linux , scripts ? fetchsvn { url = "https://www.fsfla.org/svn/fsfla/software/linux-libre/releases/branches/"; - rev = "18627"; - sha256 = "0qlalxpw2a24625ck5mxchpxl6i6cgmzkzfgyp9apmhdy8590fv5"; + rev = "18635"; + sha256 = "0d74hji2cms9z3h3s1j4i7qnw1350a95vafrqargf9s2zz0bkgfc"; } , ... }: diff --git a/pkgs/os-specific/linux/libpsm2/default.nix b/pkgs/os-specific/linux/libpsm2/default.nix index aeb261aaaca..070a18f6984 100644 --- a/pkgs/os-specific/linux/libpsm2/default.nix +++ b/pkgs/os-specific/linux/libpsm2/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "libpsm2"; - version = "11.2.203"; + version = "11.2.206"; preConfigure= '' export UDEVDIR=$out/etc/udev @@ -29,7 +29,7 @@ stdenv.mkDerivation rec { owner = "intel"; repo = "opa-psm2"; rev = "PSM2_${version}"; - sha256 = "sha256-W5Mg5ATUARMFAy1VVpMKPar0VpbKfrkxa6bDhqVYpoc="; + sha256 = "sha256-HsM2OaoX+SdbIednX1MWw1M4kkkPwUs5Dm32q2H7Mg4="; }; postInstall = '' diff --git a/pkgs/os-specific/linux/lvm2/2_03.nix b/pkgs/os-specific/linux/lvm2/2_03.nix index 555ff6b0dc1..73f1e9fbdee 100644 --- a/pkgs/os-specific/linux/lvm2/2_03.nix +++ b/pkgs/os-specific/linux/lvm2/2_03.nix @@ -1,4 +1,4 @@ import ./common.nix { - version = "2.03.14"; - sha256 = "0p5077h3z7mrr0b49ikmhlhrs4v4qb530raypk3y72ja125bqqsa"; + version = "2.03.15"; + sha256 = "17n9xl01by7dcbjwjnr6b4rrkp2frz8hwnjl59svsyp13sjq6llk"; } diff --git a/pkgs/os-specific/linux/lvm2/common.nix b/pkgs/os-specific/linux/lvm2/common.nix index 0749292531b..0f2e6efe3a2 100644 --- a/pkgs/os-specific/linux/lvm2/common.nix +++ b/pkgs/os-specific/linux/lvm2/common.nix @@ -63,6 +63,7 @@ stdenv.mkDerivation rec { preConfigure = '' sed -i /DEFAULT_SYS_DIR/d Makefile.in sed -i /DEFAULT_PROFILE_DIR/d conf/Makefile.in + '' + lib.optionalString (lib.versionOlder version "2.03.15") '' substituteInPlace scripts/lvm2_activation_generator_systemd_red_hat.c \ --replace /usr/bin/udevadm /run/current-system/systemd/bin/udevadm # https://github.com/lvmteam/lvm2/issues/36 @@ -82,7 +83,7 @@ stdenv.mkDerivation rec { sed -i 's|^#define LVM_CONFIGURE_LINE.*$|#define LVM_CONFIGURE_LINE "<removed>"|g' ./include/configure.h ''; - patches = [ + patches = lib.optionals (lib.versionOlder version "2.03.15") [ # Musl fixes from Alpine. ./fix-stdio-usage.patch (fetchpatch { diff --git a/pkgs/os-specific/linux/nixos-rebuild/default.nix b/pkgs/os-specific/linux/nixos-rebuild/default.nix index 08bba5a428d..58712835d60 100644 --- a/pkgs/os-specific/linux/nixos-rebuild/default.nix +++ b/pkgs/os-specific/linux/nixos-rebuild/default.nix @@ -5,6 +5,7 @@ , gnugrep , nix , lib +, nixosTests }: let fallback = import ./../../../../nixos/modules/installer/tools/nix-fallback-paths.nix; @@ -19,4 +20,9 @@ substituteAll { nix_i686_linux = fallback.i686-linux; nix_aarch64_linux = fallback.aarch64-linux; path = lib.makeBinPath [ coreutils gnused gnugrep ]; + + # run some a simple installer tests to make sure nixos-rebuild still works for them + passthru.tests = { + simple-installer-test = nixosTests.installer.simple; + }; } diff --git a/pkgs/os-specific/linux/nixos-rebuild/nixos-rebuild.sh b/pkgs/os-specific/linux/nixos-rebuild/nixos-rebuild.sh index 5f950eb8b76..e7c6bd01604 100755 --- a/pkgs/os-specific/linux/nixos-rebuild/nixos-rebuild.sh +++ b/pkgs/os-specific/linux/nixos-rebuild/nixos-rebuild.sh @@ -31,6 +31,7 @@ profile=/nix/var/nix/profiles/system buildHost=localhost targetHost= remoteSudo= +verboseScript= # comma separated list of vars to preserve when using sudo preservedSudoVars=NIXOS_INSTALL_BOOTLOADER @@ -71,7 +72,11 @@ while [ "$#" -gt 0 ]; do j="$1"; shift 1 extraBuildFlags+=("$i" "$j") ;; - --show-trace|--keep-failed|-K|--keep-going|-k|--verbose|-v|-vv|-vvv|-vvvv|-vvvvv|--fallback|--repair|--no-build-output|-Q|-j*|-L|--print-build-logs|--refresh|--no-net|--offline|--impure) + --show-trace|--keep-failed|-K|--keep-going|-k|--fallback|--repair|--no-build-output|-Q|-j*|-L|--print-build-logs|--refresh|--no-net|--offline|--impure) + extraBuildFlags+=("$i") + ;; + --verbose|-v|-vv|-vvv|-vvvv|-vvvvv) + verboseScript="true" extraBuildFlags+=("$i") ;; --option) @@ -143,30 +148,45 @@ if [ "$buildHost" = localhost ]; then buildHost= fi +# log the given argument to stderr if verbose mode is on +logVerbose() { + if [ -n "$verboseScript" ]; then + echo "$@" >&2 + fi +} + +# Run a command, logging it first if verbose mode is on +runCmd() { + logVerbose "$" "$@" + "$@" +} + buildHostCmd() { if [ -z "$buildHost" ]; then - "$@" + runCmd "$@" elif [ -n "$remoteNix" ]; then - ssh $SSHOPTS "$buildHost" "${maybeSudo[@]}" env PATH="$remoteNix":'$PATH' "$@" + runCmd ssh $SSHOPTS "$buildHost" "${maybeSudo[@]}" env PATH="$remoteNix":'$PATH' "$@" else - ssh $SSHOPTS "$buildHost" "${maybeSudo[@]}" "$@" + runCmd ssh $SSHOPTS "$buildHost" "${maybeSudo[@]}" "$@" fi } targetHostCmd() { if [ -z "$targetHost" ]; then - "${maybeSudo[@]}" "$@" + runCmd "${maybeSudo[@]}" "$@" else - ssh $SSHOPTS "$targetHost" "${maybeSudo[@]}" "$@" + runCmd ssh $SSHOPTS "$targetHost" "${maybeSudo[@]}" "$@" fi } copyToTarget() { if ! [ "$targetHost" = "$buildHost" ]; then if [ -z "$targetHost" ]; then - NIX_SSHOPTS=$SSHOPTS nix-copy-closure "${copyClosureFlags[@]}" --from "$buildHost" "$1" + logVerbose "Running nix-copy-closure with these NIX_SSHOPTS: $SSHOPTS" + NIX_SSHOPTS=$SSHOPTS runCmd nix-copy-closure "${copyClosureFlags[@]}" --from "$buildHost" "$1" elif [ -z "$buildHost" ]; then - NIX_SSHOPTS=$SSHOPTS nix-copy-closure "${copyClosureFlags[@]}" --to "$targetHost" "$1" + logVerbose "Running nix-copy-closure with these NIX_SSHOPTS: $SSHOPTS" + NIX_SSHOPTS=$SSHOPTS runCmd nix-copy-closure "${copyClosureFlags[@]}" --to "$targetHost" "$1" else buildHostCmd nix-copy-closure "${copyClosureFlags[@]}" --to "$targetHost" "$1" fi @@ -174,9 +194,12 @@ copyToTarget() { } nixBuild() { + logVerbose "Building in legacy (non-flake) mode." if [ -z "$buildHost" ]; then - nix-build "$@" + logVerbose "No --build-host given, running nix-build locally" + runCmd nix-build "$@" else + logVerbose "buildHost set to \"$buildHost\", running nix-build remotely" local instArgs=() local buildArgs=() local drv= @@ -206,9 +229,10 @@ nixBuild() { esac done - drv="$(nix-instantiate "${instArgs[@]}" "${extraBuildFlags[@]}")" + drv="$(runCmd nix-instantiate "${instArgs[@]}" "${extraBuildFlags[@]}")" if [ -a "$drv" ]; then - NIX_SSHOPTS=$SSHOPTS nix-copy-closure --to "$buildHost" "$drv" + logVerbose "Running nix-copy-closure with these NIX_SSHOPTS: $SSHOPTS" + NIX_SSHOPTS=$SSHOPTS runCmd nix-copy-closure --to "$buildHost" "$drv" buildHostCmd nix-store -r "$drv" "${buildArgs[@]}" else echo "nix-instantiate failed" @@ -218,12 +242,13 @@ nixBuild() { } nixFlakeBuild() { + logVerbose "Building in flake mode." if [[ -z "$buildHost" && -z "$targetHost" && "$action" != switch && "$action" != boot ]] then - nix "${flakeFlags[@]}" build "$@" + runCmd nix "${flakeFlags[@]}" build "$@" readlink -f ./result elif [ -z "$buildHost" ]; then - nix "${flakeFlags[@]}" build "$@" --out-link "${tmpDir}/result" + runCmd nix "${flakeFlags[@]}" build "$@" --out-link "${tmpDir}/result" readlink -f "${tmpDir}/result" else local attr="$1" @@ -255,9 +280,10 @@ nixFlakeBuild() { esac done - drv="$(nix "${flakeFlags[@]}" eval --raw "${attr}.drvPath" "${evalArgs[@]}" "${extraBuildFlags[@]}")" + drv="$(runCmd nix "${flakeFlags[@]}" eval --raw "${attr}.drvPath" "${evalArgs[@]}" "${extraBuildFlags[@]}")" if [ -a "$drv" ]; then - NIX_SSHOPTS=$SSHOPTS nix "${flakeFlags[@]}" copy --derivation --to "ssh://$buildHost" "$drv" + logVerbose "Running nix with these NIX_SSHOPTS: $SSHOPTS" + NIX_SSHOPTS=$SSHOPTS runCmd nix "${flakeFlags[@]}" copy --derivation --to "ssh://$buildHost" "$drv" buildHostCmd nix-store -r "$drv" "${buildArgs[@]}" else echo "nix eval failed" @@ -291,11 +317,11 @@ if [[ -n $upgrade && -z $_NIXOS_REBUILD_REEXEC && -z $flake ]]; then channel_name=$(basename "$channelpath") if [[ "$channel_name" == "nixos" ]]; then - nix-channel --update "$channel_name" + runCmd nix-channel --update "$channel_name" elif [ -e "$channelpath/.update-on-nixos-rebuild" ]; then - nix-channel --update "$channel_name" + runCmd nix-channel --update "$channel_name" elif [[ -n $upgrade_all ]] ; then - nix-channel --update "$channel_name" + runCmd nix-channel --update "$channel_name" fi done fi @@ -320,9 +346,9 @@ fi # Re-execute nixos-rebuild from the Nixpkgs tree. # FIXME: get nixos-rebuild from $flake. if [[ -z $_NIXOS_REBUILD_REEXEC && -n $canRun && -z $fast && -z $flake ]]; then - if p=$(nix-build --no-out-link --expr 'with import <nixpkgs/nixos> {}; config.system.build.nixos-rebuild' "${extraBuildFlags[@]}"); then + if p=$(runCmd nix-build --no-out-link --expr 'with import <nixpkgs/nixos> {}; config.system.build.nixos-rebuild' "${extraBuildFlags[@]}"); then export _NIXOS_REBUILD_REEXEC=1 - exec "$p/bin/nixos-rebuild" "${origArgs[@]}" + runCmd exec "$p/bin/nixos-rebuild" "${origArgs[@]}" exit 1 fi fi @@ -348,13 +374,13 @@ fi # Find configuration.nix and open editor instead of building. if [ "$action" = edit ]; then if [[ -z $flake ]]; then - NIXOS_CONFIG=${NIXOS_CONFIG:-$(nix-instantiate --find-file nixos-config)} + NIXOS_CONFIG=${NIXOS_CONFIG:-$(runCmd nix-instantiate --find-file nixos-config)} if [[ -d $NIXOS_CONFIG ]]; then NIXOS_CONFIG=$NIXOS_CONFIG/default.nix fi - exec ${EDITOR:-nano} "$NIXOS_CONFIG" + runCmd exec ${EDITOR:-nano} "$NIXOS_CONFIG" else - exec nix "${flakeFlags[@]}" edit "${lockFlags[@]}" -- "$flake#$flakeAttr" + runCmd exec nix "${flakeFlags[@]}" edit "${lockFlags[@]}" -- "$flake#$flakeAttr" fi exit 1 fi @@ -403,19 +429,19 @@ prebuiltNix() { if [[ -n $buildNix && -z $flake ]]; then echo "building Nix..." >&2 nixDrv= - if ! nixDrv="$(nix-instantiate '<nixpkgs/nixos>' --add-root "$tmpDir/nix.drv" --indirect -A config.nix.package.out "${extraBuildFlags[@]}")"; then - if ! nixDrv="$(nix-instantiate '<nixpkgs>' --add-root "$tmpDir/nix.drv" --indirect -A nix "${extraBuildFlags[@]}")"; then - if ! nixStorePath="$(nix-instantiate --eval '<nixpkgs/nixos/modules/installer/tools/nix-fallback-paths.nix>' -A "$(nixSystem)" | sed -e 's/^"//' -e 's/"$//')"; then + if ! nixDrv="$(runCmd nix-instantiate '<nixpkgs/nixos>' --add-root "$tmpDir/nix.drv" --indirect -A config.nix.package.out "${extraBuildFlags[@]}")"; then + if ! nixDrv="$(runCmd nix-instantiate '<nixpkgs>' --add-root "$tmpDir/nix.drv" --indirect -A nix "${extraBuildFlags[@]}")"; then + if ! nixStorePath="$(runCmd nix-instantiate --eval '<nixpkgs/nixos/modules/installer/tools/nix-fallback-paths.nix>' -A "$(nixSystem)" | sed -e 's/^"//' -e 's/"$//')"; then nixStorePath="$(prebuiltNix "$(uname -m)")" fi - if ! nix-store -r "$nixStorePath" --add-root "${tmpDir}/nix" --indirect \ + if ! runCmd nix-store -r "$nixStorePath" --add-root "${tmpDir}/nix" --indirect \ --option extra-binary-caches https://cache.nixos.org/; then echo "warning: don't know how to get latest Nix" >&2 fi # Older version of nix-store -r don't support --add-root. [ -e "$tmpDir/nix" ] || ln -sf "$nixStorePath" "$tmpDir/nix" if [ -n "$buildHost" ]; then - remoteNixStorePath="$(prebuiltNix "$(buildHostCmd uname -m)")" + remoteNixStorePath="$(runCmd prebuiltNix "$(buildHostCmd uname -m)")" remoteNix="$remoteNixStorePath/bin" if ! buildHostCmd nix-store -r "$remoteNixStorePath" \ --option extra-binary-caches https://cache.nixos.org/ >/dev/null; then @@ -442,8 +468,8 @@ fi # Update the version suffix if we're building from Git (so that # nixos-version shows something useful). if [[ -n $canRun && -z $flake ]]; then - if nixpkgs=$(nix-instantiate --find-file nixpkgs "${extraBuildFlags[@]}"); then - suffix=$($SHELL "$nixpkgs/nixos/modules/installer/tools/get-version-suffix" "${extraBuildFlags[@]}" || true) + if nixpkgs=$(runCmd nix-instantiate --find-file nixpkgs "${extraBuildFlags[@]}"); then + suffix=$(runCmd $SHELL "$nixpkgs/nixos/modules/installer/tools/get-version-suffix" "${extraBuildFlags[@]}" || true) if [ -n "$suffix" ]; then echo -n "$suffix" > "$nixpkgs/.version-suffix" || true fi diff --git a/pkgs/os-specific/linux/ocf-resource-agents/default.nix b/pkgs/os-specific/linux/ocf-resource-agents/default.nix index 9c9557c7be8..8d7f2b52714 100644 --- a/pkgs/os-specific/linux/ocf-resource-agents/default.nix +++ b/pkgs/os-specific/linux/ocf-resource-agents/default.nix @@ -1,3 +1,5 @@ +# This combines together OCF definitions from other derivations. +# https://github.com/ClusterLabs/resource-agents/blob/master/doc/dev-guides/ra-dev-guide.asc { stdenv , lib , runCommand @@ -8,12 +10,16 @@ , python3 , glib , drbd +, pacemaker }: let drbdForOCF = drbd.override { forOCF = true; }; + pacemakerForOCF = pacemaker.override { + forOCF = true; + }; resource-agentsForOCF = stdenv.mkDerivation rec { pname = "resource-agents"; @@ -53,4 +59,5 @@ runCommand "ocf-resource-agents" {} '' mkdir -p $out/usr/lib/ocf ${lndir}/bin/lndir -silent "${resource-agentsForOCF}/lib/ocf/" $out/usr/lib/ocf ${lndir}/bin/lndir -silent "${drbdForOCF}/usr/lib/ocf/" $out/usr/lib/ocf + ${lndir}/bin/lndir -silent "${pacemakerForOCF}/usr/lib/ocf/" $out/usr/lib/ocf '' diff --git a/pkgs/os-specific/linux/oci-seccomp-bpf-hook/default.nix b/pkgs/os-specific/linux/oci-seccomp-bpf-hook/default.nix index 511dd162785..1952d31b024 100644 --- a/pkgs/os-specific/linux/oci-seccomp-bpf-hook/default.nix +++ b/pkgs/os-specific/linux/oci-seccomp-bpf-hook/default.nix @@ -10,12 +10,12 @@ buildGoModule rec { pname = "oci-seccomp-bpf-hook"; - version = "1.2.3"; + version = "1.2.5"; src = fetchFromGitHub { owner = "containers"; repo = "oci-seccomp-bpf-hook"; rev = "v${version}"; - sha256 = "sha256-EKD6tkdQCPlVlb9ScvRwDxYAtbbv9PIqBHH6SvtPDsE="; + sha256 = "sha256-PU7WX5RAV6wWVRsqq6MdEjr00AtlTT4cSacRaxrEF2s="; }; vendorSha256 = null; diff --git a/pkgs/os-specific/linux/pflask/default.nix b/pkgs/os-specific/linux/pflask/default.nix index ba525c1a387..deb3e06ca49 100644 --- a/pkgs/os-specific/linux/pflask/default.nix +++ b/pkgs/os-specific/linux/pflask/default.nix @@ -1,18 +1,22 @@ -{ lib, stdenv, fetchFromGitHub, python2, wafHook }: +{ lib, stdenv, fetchFromGitHub, python3, wafHook }: stdenv.mkDerivation rec { pname = "pflask"; - version = "unstable-2015-12-17"; + version = "unstable-2018-01-23"; src = fetchFromGitHub { owner = "ghedo"; - repo = "pflask"; - rev = "599418bb6453eaa0ccab493f9411f13726c1a636"; - hash = "sha256-0RjitZd2JUK7WUEJuw4qhUx3joY5OI0Hh74mTzp7GmY="; + repo = pname; + rev = "9ac31ffe2ed29453218aac89ae992abbd6e7cc69"; + hash = "sha256-bAKPUj/EipZ98kHbZiFZZI3hLVMoQpCrYKMmznpSDhg="; }; - nativeBuildInputs = [ wafHook ]; - buildInputs = [ python2 ]; + nativeBuildInputs = [ python3 wafHook ]; + + postInstall = '' + mkdir -p $out/bin + cp build/pflask $out/bin + ''; meta = { description = "Lightweight process containers for Linux"; diff --git a/pkgs/os-specific/linux/smem/default.nix b/pkgs/os-specific/linux/smem/default.nix index b2636382aec..6308b83b600 100644 --- a/pkgs/os-specific/linux/smem/default.nix +++ b/pkgs/os-specific/linux/smem/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, python2 }: +{ lib, stdenv, fetchurl, python3 }: stdenv.mkDerivation rec { pname = "smem"; @@ -9,7 +9,7 @@ stdenv.mkDerivation rec { sha256 = "19ibv1byxf2b68186ysrgrhy5shkc5mc69abark1h18yigp3j34m"; }; - buildInputs = [ python2 ]; + buildInputs = [ python3 ]; makeFlags = [ "smemcap" ]; diff --git a/pkgs/os-specific/linux/tuigreet/default.nix b/pkgs/os-specific/linux/tuigreet/default.nix index 581b89fb1c6..95de5b8c8d9 100644 --- a/pkgs/os-specific/linux/tuigreet/default.nix +++ b/pkgs/os-specific/linux/tuigreet/default.nix @@ -17,7 +17,7 @@ rustPlatform.buildRustPackage rec { cargoSha256 = "sha256-H5xqk7Yd3M8sFGHlmhAS0fhh3eM4dkvkNQGVxRSXUJs="; meta = with lib; { - description = "Graphical console greter for greetd"; + description = "Graphical console greeter for greetd"; homepage = "https://github.com/apognu/tuigreet"; license = licenses.gpl3Plus; maintainers = with maintainers; [ luc65r ivar ]; diff --git a/pkgs/os-specific/linux/udisks/2-default.nix b/pkgs/os-specific/linux/udisks/2-default.nix index fd321d90cb2..427e19ac921 100644 --- a/pkgs/os-specific/linux/udisks/2-default.nix +++ b/pkgs/os-specific/linux/udisks/2-default.nix @@ -25,9 +25,11 @@ stdenv.mkDerivation rec { blkid = "${util-linux}/bin/blkid"; false = "${coreutils}/bin/false"; mdadm = "${mdadm}/bin/mdadm"; + mkswap = "${util-linux}/bin/mkswap"; sed = "${gnused}/bin/sed"; sh = "${bash}/bin/sh"; sleep = "${coreutils}/bin/sleep"; + swapon = "${util-linux}/bin/swapon"; true = "${coreutils}/bin/true"; }) (substituteAll { @@ -77,7 +79,7 @@ stdenv.mkDerivation rec { description = "A daemon, tools and libraries to access and manipulate disks, storage devices and technologies"; homepage = "https://www.freedesktop.org/wiki/Software/udisks/"; license = with licenses; [ lgpl2Plus gpl2Plus ]; # lgpl2Plus for the library, gpl2Plus for the tools & daemon - maintainers = with maintainers; [ johnazoidberg ]; + maintainers = teams.freedesktop.members ++ (with maintainers; [ johnazoidberg ]); platforms = platforms.linux; }; } diff --git a/pkgs/os-specific/linux/udisks/fix-paths.patch b/pkgs/os-specific/linux/udisks/fix-paths.patch index 215df565ecc..30bc08da8cf 100644 --- a/pkgs/os-specific/linux/udisks/fix-paths.patch +++ b/pkgs/os-specific/linux/udisks/fix-paths.patch @@ -1,17 +1,5 @@ -diff --git a/Makefile.am b/Makefile.am -index 56922b79..697f8c6e 100644 ---- a/Makefile.am -+++ b/Makefile.am -@@ -1,6 +1,6 @@ - ## Process this file with automake to produce Makefile.in - --SHELL = @BASH@ -+SHELL = @bash@ - .SHELLFLAGS = -o pipefail -c - - PYTHON ?= python3 diff --git a/data/80-udisks2.rules b/data/80-udisks2.rules -index 39bfa28b..ee1ca90a 100644 +index ca802cce..bfd1c29e 100644 --- a/data/80-udisks2.rules +++ b/data/80-udisks2.rules @@ -17,9 +17,9 @@ ENV{DM_UDEV_DISABLE_OTHER_RULES_FLAG}=="?*", GOTO="udisks_probe_end" @@ -66,9 +54,27 @@ index e7df4ed2..ab4356d9 100644 # ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ # diff --git a/src/tests/integration-test b/src/tests/integration-test -index 4499a6a9..8b711f95 100755 +index 07e4e029..3bd8ec51 100755 --- a/src/tests/integration-test +++ b/src/tests/integration-test +@@ -299,7 +299,7 @@ class UDisksTestCase(unittest.TestCase): + if not device: + device = cls.devname(partition) + result = {} +- cmd = subprocess.Popen(['blkid', '-p', '-o', 'udev', device], stdout=subprocess.PIPE) ++ cmd = subprocess.Popen(['@blkid@', '-p', '-o', 'udev', device], stdout=subprocess.PIPE) + for l in cmd.stdout: + (key, value) = l.decode('UTF-8').split('=', 1) + result[key] = value.strip() +@@ -437,7 +437,7 @@ class UDisksTestCase(unittest.TestCase): + f.write('KERNEL=="sr*", ENV{DISK_EJECT_REQUEST}!="?*", ' + 'ATTRS{model}=="scsi_debug*", ' + 'ENV{ID_CDROM_MEDIA}=="?*", ' +- 'IMPORT{program}="/sbin/blkid -o udev -p -u noraid $tempnode"\n') ++ 'IMPORT{program}="@blkid@ -o udev -p -u noraid $tempnode"\n') + # reload udev + subprocess.call('sync; pkill --signal HUP udevd || ' + 'pkill --signal HUP systemd-udevd', @@ -1142,7 +1142,7 @@ class FS(UDisksTestCase): self.assertFalse(os.access(f, os.X_OK)) @@ -150,6 +156,3 @@ index 3ddbdf2c..a87f960a 100644 udisks_spawned_job_start (job); g_object_unref (job); } --- -2.33.1 - diff --git a/pkgs/os-specific/linux/usbguard/default.nix b/pkgs/os-specific/linux/usbguard/default.nix index de4517872fc..35505af5a1e 100644 --- a/pkgs/os-specific/linux/usbguard/default.nix +++ b/pkgs/os-specific/linux/usbguard/default.nix @@ -24,14 +24,14 @@ assert libgcrypt != null -> libsodium == null; stdenv.mkDerivation rec { - version = "1.1.0"; + version = "1.1.1"; pname = "usbguard"; src = fetchFromGitHub { owner = "USBGuard"; repo = pname; rev = "usbguard-${version}"; - sha256 = "sha256-lnHeU/X/2N81WPLakRYLs8TjpBhxBPhiXDJ+wNW0sU0="; + sha256 = "sha256-lAh+l9GF+FHQqv2kEYU5JienZKGwR5e45BYAwjieYgw="; fetchSubmodules = true; }; diff --git a/pkgs/os-specific/linux/util-linux/default.nix b/pkgs/os-specific/linux/util-linux/default.nix index 8485565e0a8..bedd2417e7e 100644 --- a/pkgs/os-specific/linux/util-linux/default.nix +++ b/pkgs/os-specific/linux/util-linux/default.nix @@ -5,11 +5,11 @@ stdenv.mkDerivation rec { pname = "util-linux"; - version = "2.37.3"; + version = "2.37.4"; src = fetchurl { url = "mirror://kernel/linux/utils/util-linux/v${lib.versions.majorMinor version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-WQxZLljNa/OFGctGevBc5qGrGAQOPjQY8kvPsvVfl3Y="; + sha256 = "sha256-Y05pFq2RM2bDU2tkaOeER2lUm5mnsr+AMU3nirVlW4M="; }; patches = [ diff --git a/pkgs/os-specific/linux/v4l-utils/default.nix b/pkgs/os-specific/linux/v4l-utils/default.nix index 90a052fdef9..3fdd9e791bd 100644 --- a/pkgs/os-specific/linux/v4l-utils/default.nix +++ b/pkgs/os-specific/linux/v4l-utils/default.nix @@ -12,11 +12,11 @@ let # we need to use stdenv.mkDerivation in order not to pollute the libv4l’s closure with Qt in stdenv.mkDerivation rec { pname = "v4l-utils"; - version = "1.20.0"; + version = "1.22.1"; src = fetchurl { url = "https://linuxtv.org/downloads/${pname}/${pname}-${version}.tar.bz2"; - sha256 = "1xr66y6w422hil6s7n8d61a2vhwh4im8l267amf41jvw7xqihqcm"; + hash = "sha256-Zcb76DCkTKEFxEOwJxgsGyyQU6kdHnKthJ36s4i5TjE="; }; outputs = [ "out" ] ++ lib.optional withUtils "lib" ++ [ "dev" ]; @@ -40,14 +40,16 @@ in stdenv.mkDerivation rec { propagatedBuildInputs = [ libjpeg ]; postPatch = '' - patchShebangs utils/cec-ctl/msg2ctl.pl - patchShebangs utils/libcecutil/cec-gen.pl + patchShebangs utils/ ''; + enableParallelBuilding = true; + meta = with lib; { description = "V4L utils and libv4l, provide common image formats regardless of the v4l device"; homepage = "https://linuxtv.org/projects.php"; - license = licenses.lgpl21Plus; + changelog = "https://git.linuxtv.org/v4l-utils.git/plain/ChangeLog?h=v4l-utils-${version}"; + license = with licenses; [ lgpl21Plus gpl2Plus ]; maintainers = with maintainers; [ codyopel ]; platforms = platforms.linux; }; diff --git a/pkgs/servers/atlassian/jira.nix b/pkgs/servers/atlassian/jira.nix index 014fbedf643..7880c529c73 100644 --- a/pkgs/servers/atlassian/jira.nix +++ b/pkgs/servers/atlassian/jira.nix @@ -8,11 +8,11 @@ stdenv.mkDerivation rec { pname = "atlassian-jira"; - version = "8.21.0"; + version = "8.22.0"; src = fetchurl { url = "https://product-downloads.atlassian.com/software/jira/downloads/atlassian-jira-software-${version}.tar.gz"; - sha256 = "sha256-AJWEm6JBHINca9l0R6dILLMkPGzFVuVjOqD/4AaO5nI="; + sha256 = "sha256-swEq8g/A1Ok1P7JtceUDId7kG0GRtBPGblY09xt81Ys="; }; buildPhase = '' diff --git a/pkgs/servers/corosync/default.nix b/pkgs/servers/corosync/default.nix index df73fb9f48e..4df8a547dff 100644 --- a/pkgs/servers/corosync/default.nix +++ b/pkgs/servers/corosync/default.nix @@ -1,5 +1,5 @@ { lib, stdenv, fetchurl, makeWrapper, pkg-config, kronosnet, nss, nspr, libqb -, dbus, rdma-core, libstatgrab, net-snmp +, systemd, dbus, rdma-core, libstatgrab, net-snmp , enableDbus ? false , enableInfiniBandRdma ? false , enableMonitoring ? false @@ -20,7 +20,7 @@ stdenv.mkDerivation rec { nativeBuildInputs = [ makeWrapper pkg-config ]; buildInputs = [ - kronosnet nss nspr libqb + kronosnet nss nspr libqb systemd.dev ] ++ optional enableDbus dbus ++ optional enableInfiniBandRdma rdma-core ++ optional enableMonitoring libstatgrab @@ -32,6 +32,8 @@ stdenv.mkDerivation rec { "--with-logdir=/var/log/corosync" "--enable-watchdog" "--enable-qdevices" + # allows Type=notify in the systemd service + "--enable-systemd" ] ++ optional enableDbus "--enable-dbus" ++ optional enableInfiniBandRdma "--enable-rdma" ++ optional enableMonitoring "--enable-monitoring" @@ -63,6 +65,10 @@ stdenv.mkDerivation rec { --prefix PATH ":" "$out/sbin:${libqb}/sbin" ''; + passthru.tests = { + inherit (nixosTests) pacemaker; + }; + meta = { homepage = "http://corosync.org/"; description = "A Group Communication System with features for implementing high availability within applications"; diff --git a/pkgs/servers/dns/bind/default.nix b/pkgs/servers/dns/bind/default.nix index 2601266f4d7..81722805e27 100644 --- a/pkgs/servers/dns/bind/default.nix +++ b/pkgs/servers/dns/bind/default.nix @@ -9,11 +9,11 @@ stdenv.mkDerivation rec { pname = "bind"; - version = "9.18.0"; + version = "9.18.1"; src = fetchurl { url = "https://downloads.isc.org/isc/bind9/${version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-VlJb9crwH9j9nZCRCIDMD4qQonqX0WkYfWUdTs8MQRw="; + sha256 = "sha256-V8ev2HFpTWFctN77HBvW7QIzUJQ9dFhBTbjUk+9WBCc="; }; outputs = [ "out" "lib" "dev" "man" "dnsutils" "host" ]; diff --git a/pkgs/servers/dns/coredns/default.nix b/pkgs/servers/dns/coredns/default.nix index 7e6347e9ba3..66298866dbc 100644 --- a/pkgs/servers/dns/coredns/default.nix +++ b/pkgs/servers/dns/coredns/default.nix @@ -2,23 +2,30 @@ buildGoModule rec { pname = "coredns"; - version = "1.9.0"; + version = "1.9.1"; src = fetchFromGitHub { owner = "coredns"; repo = "coredns"; rev = "v${version}"; - sha256 = "sha256-8IYJxb+HssS2xTboBRo3lz9czklt/Sn098ATlDaO7Gs="; + sha256 = "sha256-1lJrbazEgsRHI10qIgA9KgglsxpnMIdxEWpu6RiJ0pQ="; }; - vendorSha256 = "sha256-Vxs+k4WF55xwjgdlW/1NM4NWnYqj2EOLOONflj+BoY4="; + vendorSha256 = "sha256-ueEuduZ76FUs2wE8oiHGON9+s91jaHhS6gOKr7MNh8g="; - doCheck = false; + postPatch = '' + substituteInPlace test/file_cname_proxy_test.go \ + --replace "TestZoneExternalCNAMELookupWithProxy" \ + "SkipZoneExternalCNAMELookupWithProxy" + + substituteInPlace test/readme_test.go \ + --replace "TestReadme" "SkipReadme" + ''; meta = with lib; { homepage = "https://coredns.io"; description = "A DNS server that runs middleware"; license = licenses.asl20; - maintainers = with maintainers; [ rushmorem rtreffer deltaevo ]; + maintainers = with maintainers; [ rushmorem rtreffer deltaevo superherointj ]; }; } diff --git a/pkgs/servers/dns/knot-resolver/default.nix b/pkgs/servers/dns/knot-resolver/default.nix index 4d12a6d7172..d47b5a3e6a3 100644 --- a/pkgs/servers/dns/knot-resolver/default.nix +++ b/pkgs/servers/dns/knot-resolver/default.nix @@ -17,11 +17,11 @@ lua = luajitPackages; unwrapped = stdenv.mkDerivation rec { pname = "knot-resolver"; - version = "5.4.4"; + version = "5.5.0"; src = fetchurl { url = "https://secure.nic.cz/files/knot-resolver/${pname}-${version}.tar.xz"; - sha256 = "588964319e943679d391cc9c886d40ef858ecd9b33ae160023b4e2b5182b2cea"; + sha256 = "4e6f48c74d955f143d603f6072670cb41ab9acdd95d4455d6e74b6908562c55a"; }; outputs = [ "out" "dev" ]; diff --git a/pkgs/servers/home-assistant/default.nix b/pkgs/servers/home-assistant/default.nix index 98b6dff3681..9e7fc76e4e3 100644 --- a/pkgs/servers/home-assistant/default.nix +++ b/pkgs/servers/home-assistant/default.nix @@ -37,8 +37,11 @@ let version = "0.3.0"; src = oldAttrs.src.override { inherit version; - sha256 = "0kx4mbs9bflycd8x9af0idcjhdgnzri3nw1qb0vpfyb3751qaaf9"; + hash = "sha256-ySmFQzljeXc3WDhwO2L+9jUoWYvAqdRRY566lfSqpE8="; }; + propagatedBuildInputs = with python3.pkgs; [ aiohttp pytest ]; + doCheck = false; + patches = []; }); aiohomekit = super.aiohomekit.overridePythonAttrs (oldAttrs: { doCheck = false; # requires aiohttp>=1.0.0 @@ -46,6 +49,9 @@ let hass-nabucasa = super.hass-nabucasa.overridePythonAttrs (oldAttrs: { doCheck = false; # requires aiohttp>=1.0.0 }); + snitun = super.snitun.overridePythonAttrs (oldAttrs: { + doCheck = false; # requires aiohttp>=1.0.0 + }); zwave-js-server-python = super.zwave-js-server-python.overridePythonAttrs (oldAttrs: { doCheck = false; # requires aiohttp>=1.0.0 }); diff --git a/pkgs/servers/http/apache-httpd/2.4.nix b/pkgs/servers/http/apache-httpd/2.4.nix index 56d66a2e99c..d72dcb9170b 100644 --- a/pkgs/servers/http/apache-httpd/2.4.nix +++ b/pkgs/servers/http/apache-httpd/2.4.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, perl, zlib, apr, aprutil, pcre, libiconv, lynx +{ lib, stdenv, fetchurl, perl, zlib, apr, aprutil, pcre2, libiconv, lynx, which , nixosTests , proxySupport ? true , sslSupport ? true, openssl @@ -11,17 +11,19 @@ stdenv.mkDerivation rec { pname = "apache-httpd"; - version = "2.4.52"; + version = "2.4.53"; src = fetchurl { url = "mirror://apache/httpd/httpd-${version}.tar.bz2"; - sha256 = "sha256-ASf33El+mYPpxRR0vtdeRWB/L4cKdnWobckK9tVy9ck="; + sha256 = "sha256-0LvREhpXtfKm/5LXuW+AUMWkXT8U2xGPZJedUlhY22M="; }; # FIXME: -dev depends on -doc outputs = [ "out" "dev" "man" "doc" ]; setOutputFlags = false; # it would move $out/modules, etc. + nativeBuildInputs = [ which ]; + buildInputs = [ perl ] ++ lib.optional brotliSupport brotli ++ lib.optional sslSupport openssl ++ @@ -42,7 +44,7 @@ stdenv.mkDerivation rec { "--with-apr=${apr.dev}" "--with-apr-util=${aprutil.dev}" "--with-z=${zlib.dev}" - "--with-pcre=${pcre.dev}" + "--with-pcre=${pcre2.dev}/bin/pcre2-config" "--disable-maintainer-mode" "--disable-debugger-mode" "--enable-mods-shared=all" diff --git a/pkgs/servers/imgproxy/default.nix b/pkgs/servers/imgproxy/default.nix index 2b7ed9e1c9c..b6dd99edfdd 100644 --- a/pkgs/servers/imgproxy/default.nix +++ b/pkgs/servers/imgproxy/default.nix @@ -3,16 +3,16 @@ buildGoModule rec { pname = "imgproxy"; - version = "3.3.1"; + version = "3.3.2"; src = fetchFromGitHub { owner = pname; repo = pname; - sha256 = "sha256-GZYaFK6g26gbVa3sHwTZ4fNGMFWBWevqcfJc/3SC890="; + sha256 = "sha256-LJsiZeKgetFTqX58I82jDr8fIgYJCDVhb44yg8uc/8w="; rev = "v${version}"; }; - vendorSha256 = "sha256-uV5pnnvVYviw2LnceQUiTJXva3WI51pgW6IeZzVhULc="; + vendorSha256 = "sha256-088VEntNx3ZX2p6EiAZ6nSeWmM32XLAOmqXu2sd9QG4="; doCheck = false; diff --git a/pkgs/servers/invidious/default.nix b/pkgs/servers/invidious/default.nix index 7e939f51bc9..adcd694bad9 100644 --- a/pkgs/servers/invidious/default.nix +++ b/pkgs/servers/invidious/default.nix @@ -1,24 +1,27 @@ -{ lib, crystal, fetchFromGitHub, librsvg, pkg-config, libxml2, openssl, sqlite, lsquic, nixosTests }: +{ lib, stdenv, crystal, fetchFromGitHub, librsvg, pkg-config, libxml2, openssl, shards, sqlite, lsquic, videojs, nixosTests }: let - # When updating, always update the following: - # * the git revision - # * the version attribute - # * the source hash (sha256) - # If the shards.lock file changed, also the following: - # * shards.nix (by running `crystal2nix` in invidious’ source tree) - # * If the lsquic.cr dependency changed: lsquic in lsquic.nix (version, sha256) - # * If the lsquic version changed: boringssl' in lsquic.nix (version, sha256) - rev = "21879da80d2dfa97e789a13b90e82e466c4854e3"; + # All versions, revisions, and checksums are stored in ./versions.json. + # The update process is the following: + # * pick the latest commit + # * update .invidious.rev, .invidious.version, and .invidious.sha256 + # * prefetch the videojs dependencies with scripts/fetch-player-dependencies.cr + # and update .videojs.sha256 (they are normally fetched during build + # but nix's sandboxing does not allow that) + # * if shard.lock changed + # * recreate shards.nix by running crystal2nix + # * update lsquic and boringssl if necessarry, lsquic.cr depends on + # the same version of lsquic and lsquic requires the boringssl + # commit mentioned in its README + versions = builtins.fromJSON (builtins.readFile ./versions.json); in crystal.buildCrystalPackage rec { pname = "invidious"; - version = "unstable-2021-11-08"; + inherit (versions.invidious) version; src = fetchFromGitHub { owner = "iv-org"; repo = pname; - inherit rev; - sha256 = "0jvnwjdh2l0hxfvzim00r3zbs528bb93y1nk0bjrbbrcfv5cn5ss"; + inherit (versions.invidious) rev sha256; }; postPatch = @@ -33,13 +36,15 @@ crystal.buildCrystalPackage rec { assetCommitTemplate = ''{{ "#{`git rev-list HEAD --max-count=1 --abbrev-commit -- assets`.strip}" }}''; in '' + for d in ${videojs}/*; do ln -s "$d" assets/videojs; done + # Use the version metadata from the derivation instead of using git at # build-time substituteInPlace src/invidious.cr \ --replace ${lib.escapeShellArg branchTemplate} '"master"' \ - --replace ${lib.escapeShellArg commitTemplate} '"${lib.substring 0 7 rev}"' \ + --replace ${lib.escapeShellArg commitTemplate} '"${lib.substring 0 7 versions.invidious.rev}"' \ --replace ${lib.escapeShellArg versionTemplate} '"${lib.replaceChars ["-"] ["."] (lib.substring 9 10 version)}"' \ - --replace ${lib.escapeShellArg assetCommitTemplate} '"${lib.substring 0 7 rev}"' + --replace ${lib.escapeShellArg assetCommitTemplate} '"${lib.substring 0 7 versions.invidious.rev}"' # Patch the assets and locales paths to be absolute substituteInPlace src/invidious.cr \ @@ -48,19 +53,22 @@ crystal.buildCrystalPackage rec { --replace 'File.read("locales/' 'File.read("${placeholder "out"}/share/invidious/locales/' # Reference sql initialisation/migration scripts by absolute path - substituteInPlace src/invidious/helpers/helpers.cr \ + substituteInPlace src/invidious/database/base.cr \ --replace 'config/sql' '${placeholder "out"}/share/invidious/config/sql' - substituteInPlace src/invidious/users.cr \ + substituteInPlace src/invidious/user/captcha.cr \ --replace 'Process.run(%(rsvg-convert' 'Process.run(%(${lib.getBin librsvg}/bin/rsvg-convert' ''; - nativeBuildInputs = [ pkg-config ]; + nativeBuildInputs = [ pkg-config shards ]; buildInputs = [ libxml2 openssl sqlite ]; format = "crystal"; shardsFile = ./shards.nix; - crystalBinaries.invidious.src = "src/invidious.cr"; + crystalBinaries.invidious = { + src = "src/invidious.cr"; + options = [ "--release" "--progress" "--verbose" "--no-debug" "-Dskip_videojs_download" ]; + }; postConfigure = '' # lib includes nix store paths which can’t be patched, so the links have to @@ -88,12 +96,17 @@ crystal.buildCrystalPackage rec { INVIDIOUS_CONFIG="database_url: sqlite3:///dev/null" $out/bin/invidious --help ''; - passthru.tests = { inherit (nixosTests) invidious; }; + passthru = { + inherit lsquic; + tests = { inherit (nixosTests) invidious; }; + updateScript = ./update.sh; + }; meta = with lib; { description = "An open source alternative front-end to YouTube"; homepage = "https://invidious.io/"; license = licenses.agpl3; maintainers = with maintainers; [ infinisil sbruder ]; + broken = stdenv.isDarwin && stdenv.isAarch64; }; } diff --git a/pkgs/servers/invidious/lsquic.nix b/pkgs/servers/invidious/lsquic.nix index acc9b97ae5d..292d37ce6cd 100644 --- a/pkgs/servers/invidious/lsquic.nix +++ b/pkgs/servers/invidious/lsquic.nix @@ -1,24 +1,30 @@ { lib, boringssl, stdenv, fetchgit, fetchFromGitHub, cmake, zlib, perl, libevent }: let + versions = builtins.fromJSON (builtins.readFile ./versions.json); + # lsquic requires a specific boringssl version (noted in its README) - boringssl' = boringssl.overrideAttrs (old: rec { - version = "251b5169fd44345f455438312ec4e18ae07fd58c"; + boringssl' = boringssl.overrideAttrs (old: { + version = versions.boringssl.rev; src = fetchgit { url = "https://boringssl.googlesource.com/boringssl"; - rev = version; - sha256 = "sha256-EU6T9yQCdOLx98Io8o01rEsgxDFF/Xoy42LgPopD2/A="; + inherit (versions.boringssl) rev sha256; }; + + patches = [ + # Use /etc/ssl/certs/ca-certificates.crt instead of /etc/ssl/cert.pem + ./use-etc-ssl-certs.patch + ]; }); in stdenv.mkDerivation rec { pname = "lsquic"; - version = "2.18.1"; + version = versions.lsquic.version; src = fetchFromGitHub { owner = "litespeedtech"; repo = pname; rev = "v${version}"; - sha256 = "sha256-hG8cUvhbCNeMOsKkaJlgGpzUrIx47E/WhmPIdI5F3qM="; + inherit (versions.lsquic) sha256; fetchSubmodules = true; }; @@ -49,6 +55,8 @@ stdenv.mkDerivation rec { runHook postInstall ''; + passthru.boringssl = boringssl'; + meta = with lib; { description = "A library for QUIC and HTTP/3 (version for Invidious)"; homepage = "https://github.com/litespeedtech/lsquic"; diff --git a/pkgs/servers/invidious/shards.nix b/pkgs/servers/invidious/shards.nix index 778b34496a6..582a4083e7d 100644 --- a/pkgs/servers/invidious/shards.nix +++ b/pkgs/servers/invidious/shards.nix @@ -59,10 +59,22 @@ rev = "v0.4.1"; sha256 = "1l08cydkdidq9yyil1wl240hvk41iycv04jrg6nx5mkvzw4z1bzg"; }; + spectator = { + owner = "icy-arctic-fox"; + repo = "spectator"; + rev = "v0.10.4"; + sha256 = "0rcxq2nbslvwrd8m9ajw6dzaw3hagxmkdy9s8p34cgnr4c9dijdq"; + }; sqlite3 = { owner = "crystal-lang"; repo = "crystal-sqlite3"; rev = "v0.18.0"; sha256 = "03nnvpchhq9f9ywsm3pk2rrj4a3figw7xs96zdziwgr5znkz6x93"; }; + ameba = { + owner = "crystal-ameba"; + repo = "ameba"; + rev = "v0.14.3"; + sha256 = "1cfr95xi6hsyxw1wlrh571hc775xhwmssk3k14i8b7dgbwfmm5x1"; + }; } diff --git a/pkgs/servers/invidious/update.sh b/pkgs/servers/invidious/update.sh new file mode 100755 index 00000000000..580d6136388 --- /dev/null +++ b/pkgs/servers/invidious/update.sh @@ -0,0 +1,96 @@ +#!/usr/bin/env nix-shell +#!nix-shell -i bash -p curl crystal crystal2nix jq git moreutils nix nix-prefetch pkg-config +git_url='https://github.com/iv-org/invidious.git' +git_branch='master' +git_dir='/var/tmp/invidious.git' +pkg='invidious' + +set -euo pipefail + +cd "$(dirname "${BASH_SOURCE[0]}")" + +info() { + if [ -t 2 ]; then + set -- '\033[32m%s\033[39m\n' "$@" + else + set -- '%s\n' "$@" + fi + printf "$@" >&2 +} + +json_get() { + jq -r "$1" < 'versions.json' +} + +json_set() { + jq --arg x "$2" "$1 = \$x" < 'versions.json' | sponge 'versions.json' +} + +old_rev=$(json_get '.invidious.rev') +old_version=$(json_get '.invidious.version') +today=$(LANG=C date -u +'%Y-%m-%d') + +info "fetching $git_url..." +if [ ! -d "$git_dir" ]; then + git init --initial-branch="$git_branch" "$git_dir" + git -C "$git_dir" remote add origin "$git_url" +fi +git -C "$git_dir" fetch origin "$git_branch" + +# use latest commit before today, we should not call the version *today* +# because there might still be commits coming +# use the day of the latest commit we picked as version +new_rev=$(git -C "$git_dir" log -n 1 --format='format:%H' --before="${today}T00:00:00Z" "origin/$git_branch") +new_version="unstable-$(git -C "$git_dir" log -n 1 --format='format:%cs' "$new_rev")" +info "latest commit before $today: $new_rev" + +if [ "$new_rev" = "$old_rev" ]; then + info "$pkg is up-to-date." + exit +fi + +json_set '.invidious.version' "$new_version" +json_set '.invidious.rev' "$new_rev" +new_sha256=$(nix-prefetch -I 'nixpkgs=../../..' "$pkg") +json_set '.invidious.sha256' "$new_sha256" +commit_msg="$pkg: $old_version -> $new_version" + +# fetch video.js dependencies +info "Running scripts/fetch-player-dependencies.cr..." +git -C "$git_dir" reset --hard "$new_rev" +(cd "$git_dir" && crystal run scripts/fetch-player-dependencies.cr -- --minified) +rm -f "$git_dir/assets/videojs/.gitignore" +videojs_new_sha256=$(nix hash-path --type sha256 --base32 "$git_dir/assets/videojs") +json_set '.videojs.sha256' "$videojs_new_sha256" + +if git -C "$git_dir" diff-tree --quiet "${old_rev}..${new_rev}" -- 'shard.lock'; then + info "shard.lock did not change since $old_rev." +else + info "Updating shards.nix..." + crystal2nix -- "$git_dir/shard.lock" # argv's index seems broken + + lsquic_old_version=$(json_get '.lsquic.version') + # lsquic.cr's version tracks lsquic's, so lsquic must be updated to the + # version in the shards file + lsquic_new_version=$(nix eval --raw -f 'shards.nix' lsquic.rev \ + | sed -e 's/^v//' -e 's/-[0-9]*$//') + if [ "$lsquic_old_version" != "$lsquic_new_version" ]; then + info "Updating lsquic to $lsquic_new_version..." + json_set '.lsquic.version' "$lsquic_new_version" + lsquic_new_sha256=$(nix-prefetch -I 'nixpkgs=../../..' "${pkg}.lsquic") + json_set '.lsquic.sha256' "$lsquic_new_sha256" + + info "Updating boringssl..." + # lsquic specifies the boringssl commit it requires in its README + boringssl_new_rev=$(curl -LSsf "https://github.com/litespeedtech/lsquic/raw/v${lsquic_new_version}/README.md" \ + | grep -Pom1 '(?<=^git checkout ).*') + json_set '.boringssl.rev' "$boringssl_new_rev" + boringssl_new_sha256=$(nix-prefetch -I 'nixpkgs=../../..' "${pkg}.lsquic.boringssl") + json_set '.boringssl.sha256' "$boringssl_new_sha256" + commit_msg="$commit_msg + +lsquic: $lsquic_old_version -> $lsquic_new_version" + fi +fi + +git commit --verbose --message "$commit_msg" -- versions.json shards.nix diff --git a/pkgs/servers/invidious/use-etc-ssl-certs.patch b/pkgs/servers/invidious/use-etc-ssl-certs.patch new file mode 100644 index 00000000000..b60b0b1f1a1 --- /dev/null +++ b/pkgs/servers/invidious/use-etc-ssl-certs.patch @@ -0,0 +1,13 @@ +diff --git a/crypto/x509/x509_def.c b/crypto/x509/x509_def.c +index d2bc3e5c1..329580075 100644 +--- a/crypto/x509/x509_def.c ++++ b/crypto/x509/x509_def.c +@@ -67,7 +67,7 @@ + + #define X509_CERT_AREA OPENSSLDIR + #define X509_CERT_DIR OPENSSLDIR "/certs" +-#define X509_CERT_FILE OPENSSLDIR "/cert.pem" ++#define X509_CERT_FILE "/etc/ssl/certs/ca-certificates.crt" + #define X509_PRIVATE_DIR OPENSSLDIR "/private" + #define X509_CERT_DIR_EVP "SSL_CERT_DIR" + #define X509_CERT_FILE_EVP "SSL_CERT_FILE" diff --git a/pkgs/servers/invidious/versions.json b/pkgs/servers/invidious/versions.json new file mode 100644 index 00000000000..cec068a09bf --- /dev/null +++ b/pkgs/servers/invidious/versions.json @@ -0,0 +1,18 @@ +{ + "boringssl": { + "rev": "251b5169fd44345f455438312ec4e18ae07fd58c", + "sha256": "sha256-EU6T9yQCdOLx98Io8o01rEsgxDFF/Xoy42LgPopD2/A=" + }, + "invidious": { + "rev": "ed265cfdcd131b9df5398d899cc5d7036a5b7846", + "sha256": "0hhnq4s0slwbgxra7gxapl7dcz60a7k71cndi4crqcikmazzac3b", + "version": "unstable-2022-03-16" + }, + "lsquic": { + "sha256": "sha256-hG8cUvhbCNeMOsKkaJlgGpzUrIx47E/WhmPIdI5F3qM=", + "version": "2.18.1" + }, + "videojs": { + "sha256": "0b4vxd29kpvy60yhqm376r1872gds17s6wljqw0zlr16j762k50r" + } +} diff --git a/pkgs/servers/invidious/videojs.nix b/pkgs/servers/invidious/videojs.nix new file mode 100644 index 00000000000..e4470793e51 --- /dev/null +++ b/pkgs/servers/invidious/videojs.nix @@ -0,0 +1,18 @@ +{ stdenvNoCC, cacert, crystal, openssl, pkg-config, invidious }: + +let + versions = builtins.fromJSON (builtins.readFile ./versions.json); +in +stdenvNoCC.mkDerivation { + name = "videojs"; + + inherit (invidious) src; + + builder = ./videojs.sh; + + nativeBuildInputs = [ cacert crystal openssl pkg-config ]; + + outputHashAlgo = "sha256"; + outputHashMode = "recursive"; + outputHash = versions.videojs.sha256; +} diff --git a/pkgs/servers/invidious/videojs.sh b/pkgs/servers/invidious/videojs.sh new file mode 100644 index 00000000000..31609db14eb --- /dev/null +++ b/pkgs/servers/invidious/videojs.sh @@ -0,0 +1,9 @@ +source $stdenv/setup + +unpackPhase +cd source +# this helper downloads the videojs files and checks their checksums +# against videojs-dependencies.yml so it should be pure +crystal run scripts/fetch-player-dependencies.cr -- --minified +rm -f assets/videojs/.gitignore +mv assets/videojs "$out" diff --git a/pkgs/servers/jackett/default.nix b/pkgs/servers/jackett/default.nix index 865c4490a04..69e891fe595 100644 --- a/pkgs/servers/jackett/default.nix +++ b/pkgs/servers/jackett/default.nix @@ -9,13 +9,13 @@ buildDotnetModule rec { pname = "jackett"; - version = "0.20.671"; + version = "0.20.709"; src = fetchFromGitHub { owner = pname; repo = pname; rev = "v${version}"; - sha256 = "AoOaBryZHkqp5SabfKeW5E1YoJCwGhg2luK8SQvabow="; + sha256 = "Gx1VHjs37XBcvw20pQNrA/meLuVmogdGIzroRXvTv5Q="; }; projectFile = "src/Jackett.Server/Jackett.Server.csproj"; diff --git a/pkgs/servers/jackett/deps.nix b/pkgs/servers/jackett/deps.nix index 3b0fb8cb78b..022c604d0a9 100644 --- a/pkgs/servers/jackett/deps.nix +++ b/pkgs/servers/jackett/deps.nix @@ -152,6 +152,9 @@ (fetchNuGet { pname = "Microsoft.Extensions.Primitives"; version = "5.0.0"; sha256 = "0swqcknyh87ns82w539z1mvy804pfwhgzs97cr3nwqk6g5s42gd6"; }) (fetchNuGet { pname = "Microsoft.Extensions.Primitives"; version = "6.0.0"; sha256 = "1kjiw6s4yfz9gm7mx3wkhp06ghnbs95icj9hi505shz9rjrg42q2"; }) (fetchNuGet { pname = "Microsoft.Extensions.WebEncoders"; version = "2.2.0"; sha256 = "1mhnichccw6mjf37d38q2i1kr7qp485m7apa1b872ji0q16yy1y3"; }) + (fetchNuGet { pname = "Microsoft.Net.Http.Headers"; version = "2.1.0"; sha256 = "1a02bll0flsin9grd3jxbi76ycl42qamynalbp7qbqcsprabw3ai"; }) + (fetchNuGet { pname = "Microsoft.Net.Http.Headers"; version = "2.2.0"; sha256 = "0w6lrk9z67bcirq2cj2ldfhnizc6id77ba6i30hjzgqjlyhh1gx5"; }) + (fetchNuGet { pname = "Microsoft.NET.Test.Sdk"; version = "17.0.0"; sha256 = "0bknyf5kig5icwjxls7pcn51x2b2qf91dz9qv67fl70v6cczaz2r"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.0.1"; sha256 = "01al6cfxp68dscl15z7rxfw9zvhm64dncsw09a1vmdkacsa2v6lr"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "1.1.0"; sha256 = "08vh1r12g6ykjygq5d3vq09zylgb84l63k49jc4v8faw9g93iqqm"; }) (fetchNuGet { pname = "Microsoft.NETCore.Platforms"; version = "5.0.0"; sha256 = "0mwpwdflidzgzfx2dlpkvvnkgkr2ayaf0s80737h4wa35gaj11rc"; }) @@ -159,9 +162,6 @@ (fetchNuGet { pname = "Microsoft.NETCore.Targets"; version = "1.1.0"; sha256 = "193xwf33fbm0ni3idxzbr5fdq3i2dlfgihsac9jj7whj0gd902nh"; }) (fetchNuGet { pname = "Microsoft.NETFramework.ReferenceAssemblies"; version = "1.0.0"; sha256 = "0na724xhvqm63vq9y18fl9jw9q2v99bdwr353378s5fsi11qzxp9"; }) (fetchNuGet { pname = "Microsoft.NETFramework.ReferenceAssemblies.net461"; version = "1.0.0"; sha256 = "00vkn4c6i0rn1l9pv912y0wgb9h6ks76qah8hvk441nari8fqbm1"; }) - (fetchNuGet { pname = "Microsoft.Net.Http.Headers"; version = "2.1.0"; sha256 = "1a02bll0flsin9grd3jxbi76ycl42qamynalbp7qbqcsprabw3ai"; }) - (fetchNuGet { pname = "Microsoft.Net.Http.Headers"; version = "2.2.0"; sha256 = "0w6lrk9z67bcirq2cj2ldfhnizc6id77ba6i30hjzgqjlyhh1gx5"; }) - (fetchNuGet { pname = "Microsoft.NET.Test.Sdk"; version = "17.0.0"; sha256 = "0bknyf5kig5icwjxls7pcn51x2b2qf91dz9qv67fl70v6cczaz2r"; }) (fetchNuGet { pname = "Microsoft.TestPlatform.ObjectModel"; version = "17.0.0"; sha256 = "1bh5scbvl6ndldqv20sl34h4y257irm9ziv2wyfc3hka6912fhn7"; }) (fetchNuGet { pname = "Microsoft.TestPlatform.TestHost"; version = "17.0.0"; sha256 = "06mn31cgpp7d8lwdyjanh89prc66j37dchn74vrd9s588rq0y70r"; }) (fetchNuGet { pname = "Microsoft.Win32.Primitives"; version = "4.3.0"; sha256 = "0j0c1wj4ndj21zsgivsc24whiya605603kxrbiw6wkfdync464wq"; }) @@ -185,8 +185,8 @@ (fetchNuGet { pname = "NLog.Web.AspNetCore"; version = "4.14.0"; sha256 = "1q2v44inp4xjynncxpv432k2qjkfara1bpipmv3p3in0yv14l3wg"; }) (fetchNuGet { pname = "NuGet.Frameworks"; version = "5.0.0"; sha256 = "18ijvmj13cwjdrrm52c8fpq021531zaz4mj4b4zapxaqzzxf2qjr"; }) (fetchNuGet { pname = "NUnit"; version = "3.13.2"; sha256 = "00bkjgarkwbj497da9d7lajala1ns67h1kx53w4bapwkf32jlcvn"; }) - (fetchNuGet { pname = "NUnit3TestAdapter"; version = "4.1.0"; sha256 = "1z5g15npmsjszhfmkrdmp4ds7jpxzhxblss2rjl5mfn5sihy4cww"; }) (fetchNuGet { pname = "NUnit.ConsoleRunner"; version = "3.12.0"; sha256 = "00ihk6i3wzqndrn6yyh1csh4b3h226x5kwdp3716p75p4nljs1ik"; }) + (fetchNuGet { pname = "NUnit3TestAdapter"; version = "4.1.0"; sha256 = "1z5g15npmsjszhfmkrdmp4ds7jpxzhxblss2rjl5mfn5sihy4cww"; }) (fetchNuGet { pname = "Polly"; version = "7.2.2"; sha256 = "0s15n5zwj44i6sw3v40ca8l6j0ijydxcakvad49j52rp49iwrmkn"; }) (fetchNuGet { pname = "runtime.debian.8-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "16rnxzpk5dpbbl1x354yrlsbvwylrq456xzpsha1n9y3glnhyx9d"; }) (fetchNuGet { pname = "runtime.fedora.23-x64.runtime.native.System.Security.Cryptography.OpenSsl"; version = "4.3.0"; sha256 = "0hkg03sgm2wyq8nqk6dbm9jh5vcq57ry42lkqdmfklrw89lsmr59"; }) diff --git a/pkgs/servers/libreddit/default.nix b/pkgs/servers/libreddit/default.nix index 121eeb991f9..7724c4cf381 100644 --- a/pkgs/servers/libreddit/default.nix +++ b/pkgs/servers/libreddit/default.nix @@ -8,16 +8,16 @@ rustPlatform.buildRustPackage rec { pname = "libreddit"; - version = "0.21.7"; + version = "0.22.1"; src = fetchFromGitHub { owner = "spikecodes"; repo = pname; rev = "v${version}"; - sha256 = "sha256-pALPhSoamsU5xEbSoXFe+Cikl16gxTXccUATMkYB97M="; + sha256 = "sha256-k6GAxEGmDzC6nUCMYXahw/MTQanpZw8UMBVPCA4zSTs="; }; - cargoSha256 = "sha256-/P8wyFPCcCoGINtJ0qom3xLlkunH6xZPd7/7ynXmTy4="; + cargoSha256 = "sha256-K31z5j/pBN84Egrfwe4/V3hpbIrlzn6ppFFNWFXFVcc="; buildInputs = lib.optional stdenv.isDarwin Security; diff --git a/pkgs/servers/mautrix-telegram/0002-Don-t-depend-on-pytest-runner.patch b/pkgs/servers/mautrix-telegram/0002-Don-t-depend-on-pytest-runner.patch deleted file mode 100644 index f1ec3e622cf..00000000000 --- a/pkgs/servers/mautrix-telegram/0002-Don-t-depend-on-pytest-runner.patch +++ /dev/null @@ -1,24 +0,0 @@ -From eb39954acf73096d65ba1e9575cbeb3d4307d5df Mon Sep 17 00:00:00 2001 -From: Maximilian Bosch <maximilian@mbosch.me> -Date: Sun, 29 Nov 2020 20:55:17 +0100 -Subject: [PATCH 2/2] Don't depend on pytest-runner - ---- - setup.py | 1 - - 1 file changed, 1 deletion(-) - -diff --git a/setup.py b/setup.py -index 95dbf89..89ea2a7 100644 ---- a/setup.py -+++ b/setup.py -@@ -57,7 +57,6 @@ setuptools.setup( - ] - }, - -- setup_requires=["pytest-runner"], - tests_require=["pytest", "pytest-asyncio", "pytest-mock"], - - classifiers=[ --- -2.28.0 - diff --git a/pkgs/servers/mautrix-telegram/default.nix b/pkgs/servers/mautrix-telegram/default.nix index 267f89182fb..e96427f30f3 100644 --- a/pkgs/servers/mautrix-telegram/default.nix +++ b/pkgs/servers/mautrix-telegram/default.nix @@ -6,11 +6,11 @@ let python = python3.override { packageOverrides = self: super: { tulir-telethon = self.telethon.overridePythonAttrs (oldAttrs: rec { - version = "1.25.0a3"; + version = "1.25.0a5"; pname = "tulir-telethon"; src = oldAttrs.src.override { inherit pname version; - sha256 = "sha256-/kau9Q2+7giVx52tmjvYIbcDcY1/om31X9BlRvZipuk="; + sha256 = "sha256-WFiWczuw6eVVid2Z1LsnGE6BCEhqeCuiQ/p0d2Ahbi8="; }; }); }; @@ -25,22 +25,17 @@ let in python.pkgs.buildPythonPackage rec { pname = "mautrix-telegram"; - version = "0.11.1"; + version = "0.11.2"; disabled = python.pythonOlder "3.7"; src = fetchFromGitHub { owner = "mautrix"; repo = "telegram"; rev = "v${version}"; - sha256 = "sha256-Df+v1Q+5Iaa9GKcwIabMKjJwmVd5Qub8M54jEEiAPFc="; + sha256 = "sha256-ZECTHAP5l9tAk9Ies8XuPpH9jqYDJSRSHVKz1lA6Sjg="; }; patches = [ ./0001-Re-add-entrypoint.patch ]; - postPatch = '' - substituteInPlace requirements.txt \ - --replace "telethon>=1.22,<1.23" "telethon" - ''; - propagatedBuildInputs = with python.pkgs; ([ Mako diff --git a/pkgs/servers/mautrix-whatsapp/default.nix b/pkgs/servers/mautrix-whatsapp/default.nix index 92f6d1f15ac..e26743b9edf 100644 --- a/pkgs/servers/mautrix-whatsapp/default.nix +++ b/pkgs/servers/mautrix-whatsapp/default.nix @@ -2,18 +2,18 @@ buildGoModule rec { pname = "mautrix-whatsapp"; - version = "0.2.4"; + version = "0.3.0"; src = fetchFromGitHub { owner = "mautrix"; repo = "whatsapp"; rev = "v${version}"; - sha256 = "lBAnMrU292URrZIxPvPIAO50GAFvvZHfUjKMYxZwGb8="; + sha256 = "M44APMnpQU+9TTJu4NF528o0JvGvWja4H7XUcAHtxrA="; }; buildInputs = [ olm ]; - vendorSha256 = "KiNABUZ92gYprTdNAKKMjygr0BzQGVYVPRPMxvYi1VQ="; + vendorSha256 = "o3KTcnMd6Tqt9QIfW29wvN8POIFThNg8AdeGDF5wbVc="; doCheck = false; diff --git a/pkgs/servers/misc/virtiofsd/default.nix b/pkgs/servers/misc/virtiofsd/default.nix index 6d5ebbb76c0..d8ae7ca61d9 100644 --- a/pkgs/servers/misc/virtiofsd/default.nix +++ b/pkgs/servers/misc/virtiofsd/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "virtiofsd"; - version = "1.0.0"; + version = "1.1.0"; src = fetchFromGitLab { owner = "virtio-fs"; repo = "virtiofsd"; rev = "v${version}"; - sha256 = "010xf482qip91mv91wy9zjdsq0gfg1fd6iclrcry0nfnwlbigbwd"; + sha256 = "sha256-WB0zu2M/5enBOoOUUSXnNAkbsA+JzDgtoLncE1YcDLs="; }; - cargoSha256 = "0bfvqbmvkf17slra5k0nnva6j6w07769k226qnbzb3947zf4x2ga"; + cargoSha256 = "sha256-uRPmZE/xc0yeurBZ4rnrZua5d4lbPwStMUacFgbquuk="; buildInputs = [ libcap_ng libseccomp ]; diff --git a/pkgs/servers/monitoring/grafana/default.nix b/pkgs/servers/monitoring/grafana/default.nix index bc669bbf502..2b3ae9f64de 100644 --- a/pkgs/servers/monitoring/grafana/default.nix +++ b/pkgs/servers/monitoring/grafana/default.nix @@ -2,7 +2,7 @@ buildGoModule rec { pname = "grafana"; - version = "8.4.3"; + version = "8.4.4"; excludedPackages = "\\(alert_webhook_listener\\|clean-swagger\\|release_publisher\\|slow_proxy\\|slow_proxy_mac\\|macaron\\)"; @@ -10,12 +10,12 @@ buildGoModule rec { rev = "v${version}"; owner = "grafana"; repo = "grafana"; - sha256 = "sha256-+d4pcuNLbM2PY1rFpnIjoakpr63kMqI/SjpTRZecRXw="; + sha256 = "sha256-WLmmf2GlP7axuYj0TLJlDwe1k/9xNQbLvAggG+AshKg="; }; srcStatic = fetchurl { url = "https://dl.grafana.com/oss/release/grafana-${version}.linux-amd64.tar.gz"; - sha256 = "sha256-l3GPSUci812KbHKMXHtS4OlvYyuKlBOeQCLtLvvkhzI="; + sha256 = "sha256-eH6L7X1WvvL+9+R9FrpvVMxVJYcrHicaLkH2LUJs3AQ="; }; vendorSha256 = "sha256-RugV5cHlpR739CA1C/7FkXasvkv18m7pPsK6mxfSkC0="; diff --git a/pkgs/servers/monitoring/prometheus/apcupsd-exporter.nix b/pkgs/servers/monitoring/prometheus/apcupsd-exporter.nix index 64105c9c58f..c2f90322850 100644 --- a/pkgs/servers/monitoring/prometheus/apcupsd-exporter.nix +++ b/pkgs/servers/monitoring/prometheus/apcupsd-exporter.nix @@ -2,18 +2,16 @@ buildGoModule rec { pname = "apcupsd-exporter"; - version = "0.2.0"; + version = "0.3.0"; src = fetchFromGitHub { owner = "mdlayher"; repo = "apcupsd_exporter"; rev = "v${version}"; - sha256 = "0gjj23qdjs7rqimq95rbfw43m4l6g73j840svxjlmpd1vzzz2v2q"; + sha256 = "sha256-c0LsUqpJbmWQmbmSGdEy7Bbk20my6iWNLeqtU5BjYlw="; }; - vendorSha256 = "09x8y8pmgfn897hvnk122ry460y12b8a7y5fafri5wn9vxab9r82"; - - doCheck = false; + vendorSha256 = "sha256-bvLwHLviIAGmxYY1O0wFDWAMginEUklicrbjIbbPuUw="; passthru.tests = { inherit (nixosTests.prometheus-exporters) apcupsd; }; diff --git a/pkgs/servers/monitoring/prometheus/wireguard-exporter.nix b/pkgs/servers/monitoring/prometheus/wireguard-exporter.nix index 1dbb3179627..61cf36f882d 100644 --- a/pkgs/servers/monitoring/prometheus/wireguard-exporter.nix +++ b/pkgs/servers/monitoring/prometheus/wireguard-exporter.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "wireguard-exporter"; - version = "3.5.0"; + version = "3.6.2"; src = fetchFromGitHub { owner = "MindFlavor"; repo = "prometheus_wireguard_exporter"; rev = version; - sha256 = "sha256-LHhqQ0p2qt6ZAdkpY1SEAcGXH47TPhHvlDv+eL8GC58="; + sha256 = "sha256-eVGyBynKZLGlsaLwUOx7cJWdRHl65S0Wk1K5c9T8ysQ="; }; - cargoSha256 = "sha256-lNFsO7FSmH1+DLM7ID0vn6234qTdtUoaLSnqKcbHoXE="; + cargoSha256 = "sha256-JbFoaMTs6TPYq2qgBkT7WX1itMXohgcWbC1UvaXOi8o="; buildInputs = lib.optionals stdenv.isDarwin [ libiconv Security ]; diff --git a/pkgs/servers/mpd/default.nix b/pkgs/servers/mpd/default.nix index 8eb78270377..c83d6e3e1fb 100644 --- a/pkgs/servers/mpd/default.nix +++ b/pkgs/servers/mpd/default.nix @@ -116,13 +116,13 @@ let in stdenv.mkDerivation rec { pname = "mpd"; - version = "0.23.5"; + version = "0.23.6"; src = fetchFromGitHub { owner = "MusicPlayerDaemon"; repo = "MPD"; rev = "v${version}"; - sha256 = "sha256-zsxh/rUJtcuke0zYBrh225Qd6RKo1SiFDbMmROdkyjI="; + sha256 = "sha256-pVIbaCg3qDw7bjhLQHz6Rr3m498LeKNQVhRk4m5tpVQ="; }; buildInputs = [ diff --git a/pkgs/servers/nats-server/default.nix b/pkgs/servers/nats-server/default.nix index 695480a05c9..7b6b1238d4d 100644 --- a/pkgs/servers/nats-server/default.nix +++ b/pkgs/servers/nats-server/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "nats-server"; - version = "2.7.2"; + version = "2.7.4"; src = fetchFromGitHub { rev = "v${version}"; owner = "nats-io"; repo = pname; - sha256 = "0w4hjz1x6zwcxhnd1y3874agyn8nsdra4fky6kc2rrfikjcw003y"; + sha256 = "sha256-lMwFh+njzQr1hOJFbO3LnPdBK7U4XmX4F/6MlIRILlU="; }; - vendorSha256 = "1gvvjwx1g8mhcqi3ssb3k5ylkz0afpmnf6h2zfny9rc4dk2cp2dy"; + vendorSha256 = "sha256-EEOvDOqMbqfB0S3Nf7RQMKGSZX802eqa3eGaNjUHxQ4="; doCheck = false; diff --git a/pkgs/servers/nats-streaming-server/default.nix b/pkgs/servers/nats-streaming-server/default.nix index 4d6fdbda636..247f9d84007 100644 --- a/pkgs/servers/nats-streaming-server/default.nix +++ b/pkgs/servers/nats-streaming-server/default.nix @@ -1,19 +1,23 @@ -{ buildGoPackage, fetchFromGitHub, lib }: +{ buildGoModule, fetchFromGitHub, lib }: with lib; -buildGoPackage rec { +buildGoModule rec { pname = "nats-streaming-server"; - version = "0.23.0"; - goPackagePath = "github.com/nats-io/${pname}"; + version = "0.24.3"; src = fetchFromGitHub { rev = "v${version}"; owner = "nats-io"; repo = pname; - sha256 = "sha256-Uol1A4+0V4dUQ7Qw0qRUWHzFBugVDYSulDGTJZ4a+ts="; + sha256 = "sha256-vpDOiFuxLpqor+9SztdZrJvwC8QGwt5+df4R2OTcxlA="; }; + vendorSha256 = "sha256:1m783cq20xlv5aglf252g5127r5ilfq4fqj00vim38v271511hmy"; + + # tests fail and ask to `go install` + doCheck = false; + meta = { description = "NATS Streaming System Server"; license = licenses.asl20; diff --git a/pkgs/servers/nextcloud/default.nix b/pkgs/servers/nextcloud/default.nix index 735bfdeafb1..d9a4465a10a 100644 --- a/pkgs/servers/nextcloud/default.nix +++ b/pkgs/servers/nextcloud/default.nix @@ -33,23 +33,18 @@ let }; }; in { - nextcloud20 = throw '' - Nextcloud v20 has been removed from `nixpkgs` as the support for it was dropped - by upstream in 2021-10. Please upgrade to at least Nextcloud v21 by declaring + nextcloud21 = throw '' + Nextcloud v21 has been removed from `nixpkgs` as the support for it was dropped + by upstream in 2022-02. Please upgrade to at least Nextcloud v22 by declaring - services.nextcloud.package = pkgs.nextcloud21; + services.nextcloud.package = pkgs.nextcloud22; in your NixOS config. - WARNING: if you were on Nextcloud 19 on NixOS 21.05 you have to upgrade to Nextcloud 20 - first on 21.05 because Nextcloud doesn't support upgrades accross multiple major versions! + WARNING: if you were on Nextcloud 20 on NixOS 21.11 you have to upgrade to Nextcloud 21 + first on 21.11 because Nextcloud doesn't support upgrades accross multiple major versions! ''; - nextcloud21 = generic { - version = "21.0.9"; - sha256 = "sha256-p6bvgTXmmjGN3TRQpG88f3YPksh0QzWG9j9KnEjcrqE="; - }; - nextcloud22 = generic { version = "22.2.5"; sha256 = "sha256-gb5N0u5tu4/nI2xIpjXwm2hiSDCrBhIDyN6gKGOsdS8="; diff --git a/pkgs/servers/owncast/default.nix b/pkgs/servers/owncast/default.nix index 68591f45823..774f51bc0f6 100644 --- a/pkgs/servers/owncast/default.nix +++ b/pkgs/servers/owncast/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "owncast"; - version = "0.0.10"; + version = "0.0.11"; src = fetchFromGitHub { owner = "owncast"; repo = "owncast"; rev = "v${version}"; - sha256 = "sha256-OcolQ4KnZbSgS1dpphbCML40jlheKAxbac7rjRul6Oc="; + sha256 = "sha256-SVe7CH+qx3hFZ/cay6Hh5+vx0ncHACiNSM6k7fCDH18="; }; - vendorSha256 = "sha256-NARHYeOVT7sxfL1BdJc/CPCgHNZzjWE7kACJvrEC71Y="; + vendorSha256 = "sha256-19FTfUCG1omk5y1HC2yb7/0CM2x6k5BGSM+sZwlKrxY="; propagatedBuildInputs = [ ffmpeg ]; diff --git a/pkgs/servers/peertube/default.nix b/pkgs/servers/peertube/default.nix index 9961e9d581a..558c21c6cd1 100644 --- a/pkgs/servers/peertube/default.nix +++ b/pkgs/servers/peertube/default.nix @@ -6,13 +6,13 @@ let if stdenv.hostPlatform.system == "x86_64-linux" then "linux-x64" else throw "Unsupported architecture: ${stdenv.hostPlatform.system}"; - version = "4.1.0"; + version = "4.1.1"; source = fetchFromGitHub { owner = "Chocobozzz"; repo = "PeerTube"; rev = "v${version}"; - sha256 = "sha256-gW/dzWns6wK3zzNjbW19HrV2jqzjdXR5uMMNXL4Xfdw="; + sha256 = "sha256-yBRontvkcVU3BNUIB6WfH2a5blU9u3CNyHrou16h42s="; }; yarnOfflineCacheServer = fetchYarnDeps { @@ -27,7 +27,7 @@ let yarnOfflineCacheClient = fetchYarnDeps { yarnLock = "${source}/client/yarn.lock"; - sha256 = "sha256-wniMvtz7i3I4pn9xyzfNi1k7gQuzDl1GmEO8LqPBMKg="; + sha256 = "sha256-cBa0lNq9JsYi34EJzl0pPbDXSYL9a8g6MmiL6Ge65ms="; }; bcrypt_version = "5.0.1"; @@ -75,10 +75,15 @@ in stdenv.mkDerivation rec { cd ~ # Build PeerTube server - npm run build:server + npm run tsc -- --build ./tsconfig.json + npm run resolve-tspaths:server + cp -r "./server/static" "./server/assets" "./dist/server" + cp -r "./server/lib/emails" "./dist/server/lib" # Build PeerTube tools + cp -r "./server/tools/node_modules" "./dist/server/tools" npm run tsc -- --build ./server/tools/tsconfig.json + npm run resolve-tspaths:cli # Build PeerTube client npm run build:client diff --git a/pkgs/servers/piping-server-rust/default.nix b/pkgs/servers/piping-server-rust/default.nix index 7cf9442f13b..8885179de4d 100644 --- a/pkgs/servers/piping-server-rust/default.nix +++ b/pkgs/servers/piping-server-rust/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "piping-server-rust"; - version = "0.12.0"; + version = "0.12.1"; src = fetchFromGitHub { owner = "nwtgck"; repo = pname; rev = "v${version}"; - sha256 = "sha256-eDO2y/4660IAcD9vf1Vt6t3nv3Rc+zCRRFBbW/FeKIw="; + sha256 = "sha256-L15ofIM5a/qoJHGXmkuTsmQLLmERG/PxAJ4+z1nn7w4="; }; - cargoSha256 = "sha256-U68R543l28osPe0DjuERqB/G6ur/BZDpWMZIO9RObaM="; + cargoSha256 = "sha256-CcIM7T7P4LbPxPK1ZqoJRP0IsLMEwMZg9DcuRu0aJHM="; buildInputs = lib.optionals stdenv.isDarwin [ CoreServices Security ]; diff --git a/pkgs/servers/pleroma/default.nix b/pkgs/servers/pleroma/default.nix index ec7de2ac57c..dd4025a76c0 100644 --- a/pkgs/servers/pleroma/default.nix +++ b/pkgs/servers/pleroma/default.nix @@ -1,7 +1,8 @@ { lib, beamPackages , fetchFromGitHub, fetchFromGitLab -, file, cmake +, file, cmake, bash , nixosTests, writeText +, cookieFile ? null , ... }: @@ -17,6 +18,34 @@ beamPackages.mixRelease rec { sha256 = "sha256-RcqqNNNCR4cxETUCyjChkpq+cQ1QzNOHHzdqBLtOc6g="; }; + preFixup = if (cookieFile != null) then '' + # There's no way to use a subprocess to cat the content of the + # file cookie using wrapProgram: it gets escaped (by design) with + # a pair of backticks :( + # We have to come up with our own custom wrapper to do this. + function wrapWithCookie () { + local hidden + hidden="$(dirname "$1")/.$(basename "$1")"-wrapped + while [ -e "$hidden" ]; do + hidden="''${hidden}_" + done + mv "$1" "''${hidden}" + + cat > "$1" << EOF + #!${bash}/bin/bash + export RELEASE_COOKIE="\$(cat "${cookieFile}")" + exec -a "\$0" "''${hidden}" "\$@" + EOF + chmod +x "$1" + } + + for f in "$out"/bin/*; do + if [[ -x "$f" ]]; then + wrapWithCookie "$f" + fi + done + '' else ""; + mixNixDeps = import ./mix.nix { inherit beamPackages lib; overrides = (final: prev: { diff --git a/pkgs/servers/sabnzbd/default.nix b/pkgs/servers/sabnzbd/default.nix index 2dc2d76c891..5f12ae0ee95 100644 --- a/pkgs/servers/sabnzbd/default.nix +++ b/pkgs/servers/sabnzbd/default.nix @@ -24,14 +24,14 @@ let ]); path = lib.makeBinPath [ par2cmdline unrar unzip p7zip ]; in stdenv.mkDerivation rec { - version = "3.5.1"; + version = "3.5.3"; pname = "sabnzbd"; src = fetchFromGitHub { owner = pname; repo = pname; rev = version; - sha256 = "sha256-/HakjY0/oGq3lt0kM5p9n3sZ4g/UDtUNyXNpl9zTFl8="; + sha256 = "sha256-pdYTTahdn9YVFreU5KhMGlUzQxHviN5G4TxWKKRBxOc="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/servers/sql/materialize/default.nix b/pkgs/servers/sql/materialize/default.nix index ce91c322af1..9dcfb8fe3e5 100644 --- a/pkgs/servers/sql/materialize/default.nix +++ b/pkgs/servers/sql/materialize/default.nix @@ -40,17 +40,17 @@ let in rustPlatform.buildRustPackage rec { pname = "materialize"; - version = "0.15.0"; - MZ_DEV_BUILD_SHA = "f79f63205649d6011822893c5b55396b2bef7b0b"; + version = "0.17.0"; + MZ_DEV_BUILD_SHA = "9f8cf75b461d288335cb6a7a73aaa670bab4a466"; src = fetchFromGitHub { owner = "MaterializeInc"; repo = pname; rev = "v${version}"; - hash = "sha256-/A6+0fehBa8XEB8P8QUV5Lsl9Lwfz4FhQLgotvBG1Gw="; + hash = "sha256-wKYU5S77VoOX7UA9/d21Puz9NYs/om08eNM69/m3Orc="; }; - cargoHash = "sha256-NJvAIy9b39HWJaG860Mlf3WasanUnz+Nq39k4WpddB0="; + cargoHash = "sha256-GTkn/fUprkpsDeQxtzdmS7Fub9QODO5/4nh9ERswOY0="; nativeBuildInputs = [ cmake perl pkg-config ] # Provides the mig command used by the krb5-src build script @@ -71,9 +71,6 @@ rustPlatform.buildRustPackage rec { "--skip test_client_subject_and_references" "--skip test_no_block" "--skip test_safe_mode" - # this test is broken on 0.15.0 - # TODO: re-add it in a subsequent release - "--skip test_threads" "--skip test_tls" ]; diff --git a/pkgs/servers/sql/postgresql/default.nix b/pkgs/servers/sql/postgresql/default.nix index 0af47ccca83..0998ddb573d 100644 --- a/pkgs/servers/sql/postgresql/default.nix +++ b/pkgs/servers/sql/postgresql/default.nix @@ -202,9 +202,9 @@ let in self: { postgresql_10 = self.callPackage generic { - version = "10.19"; + version = "10.20"; psqlSchema = "10.0"; # should be 10, but changing it is invasive - sha256 = "sha256-brgwtCi2DoSuh+IENrzmecTZ0CAr567A5BsMZ9kTQjk="; + sha256 = "sha256-h94W1ZvP5C+mBcMSxZvl4pToo+astlXdetR8u5MKZZ8="; this = self.postgresql_10; thisAttr = "postgresql_10"; inherit self; @@ -212,36 +212,36 @@ in self: { }; postgresql_11 = self.callPackage generic { - version = "11.14"; + version = "11.15"; psqlSchema = "11.1"; # should be 11, but changing it is invasive - sha256 = "sha256-llx/S+lvtk+VgYUsWMTwXDgS1K2CPA8+K9/nd8Fi+Zk="; + sha256 = "sha256-yPWOjr1PRWf0+boQMus+meAlHYfL4+VktIVZDjeoeeM="; this = self.postgresql_11; thisAttr = "postgresql_11"; inherit self; }; postgresql_12 = self.callPackage generic { - version = "12.9"; + version = "12.10"; psqlSchema = "12"; - sha256 = "sha256-if2i3jPtBKmFSOQ/PuXxW4gr4XUF1jH+DdGlQKK1bc4="; + sha256 = "sha256-g90ZLmA0lRGSuahtwZzzcXqLghIOLxGgo2cjyCDSslc="; this = self.postgresql_12; thisAttr = "postgresql_12"; inherit self; }; postgresql_13 = self.callPackage generic { - version = "13.5"; + version = "13.6"; psqlSchema = "13"; - sha256 = "sha256-m4EGelXtuqvEGKrO9FfdhHdkKCdJlWCwBhWm6mwT9rM="; + sha256 = "sha256-uvx/o9nU2o/nG4TGO6i9/oCSk1wwwKqFwkssCFCPZ/w="; this = self.postgresql_13; thisAttr = "postgresql_13"; inherit self; }; postgresql_14 = self.callPackage generic { - version = "14.1"; + version = "14.2"; psqlSchema = "14"; - sha256 = "sha256-TTwQHqeuOJgvBr3HN1i1Nyf7ZALs2TggBvpezHwspB8="; + sha256 = "sha256-LPeLLkaJEvgQHWldtTQM8xPC6faKYS+3FCdSToyal3o="; this = self.postgresql_14; thisAttr = "postgresql_14"; inherit self; diff --git a/pkgs/servers/sql/postgresql/ext/pgroonga.nix b/pkgs/servers/sql/postgresql/ext/pgroonga.nix index c0d05fc1769..d4085b00ec5 100644 --- a/pkgs/servers/sql/postgresql/ext/pgroonga.nix +++ b/pkgs/servers/sql/postgresql/ext/pgroonga.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "pgroonga"; - version = "2.3.4"; + version = "2.3.5"; src = fetchurl { url = "https://packages.groonga.org/source/${pname}/${pname}-${version}.tar.gz"; - sha256 = "sha256-XE669KfHEyY5TghMUC0GcIqdPTsdAs04pA/t84k+i2E="; + sha256 = "sha256-Auw9dBS2JVvnsJM00PCfLeDl1M+HOYJRCbD0Bro6dlg="; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/servers/tailscale/default.nix b/pkgs/servers/tailscale/default.nix index 8decb2f4d29..7c7bb84e15b 100644 --- a/pkgs/servers/tailscale/default.nix +++ b/pkgs/servers/tailscale/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "tailscale"; - version = "1.22.1"; + version = "1.22.2"; src = fetchFromGitHub { owner = "tailscale"; repo = "tailscale"; rev = "v${version}"; - sha256 = "sha256-VUML5GwHrRYPd9lnOZuMA3T1SfdC0rVLP5m1yf+SA0A="; + sha256 = "sha256-W4BcUDMxUZKFXueSI/Xlml17Jabi/hnnOyXgitao76A="; }; nativeBuildInputs = lib.optionals stdenv.isLinux [ makeWrapper ]; diff --git a/pkgs/servers/unifi/default.nix b/pkgs/servers/unifi/default.nix index 4902123181d..ea4ef814195 100644 --- a/pkgs/servers/unifi/default.nix +++ b/pkgs/servers/unifi/default.nix @@ -65,7 +65,7 @@ in rec { }; unifi7 = generic { - version = "7.0.20-894288bd9b"; - sha256 = "sha256-lDSU4D159svqkv+e61v/RWIyw0KOrF8X0nNpo9eQe50="; + version = "7.0.23"; + sha256 = "1y2z02blgbqa6xvwjrvzx6mfwbbbmmv50rq409rsg1hkkzispxmw"; }; } diff --git a/pkgs/servers/web-apps/wordpress/default.nix b/pkgs/servers/web-apps/wordpress/default.nix index 343a1c345c6..1e6b40865ee 100644 --- a/pkgs/servers/web-apps/wordpress/default.nix +++ b/pkgs/servers/web-apps/wordpress/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "wordpress"; - version = "5.9"; + version = "5.9.2"; src = fetchurl { url = "https://wordpress.org/${pname}-${version}.tar.gz"; - sha256 = "sha256-RVg45GvS0wqEka6b0lv3Acgu1p28fImAbioTCGjG/7c="; + sha256 = "sha256-d2Xy3SpWzpIHmXh8x5BKWF9jNlvKK6D3uwbqIGDGn4s="; }; installPhase = '' diff --git a/pkgs/servers/xmpp/prosody/default.nix b/pkgs/servers/xmpp/prosody/default.nix index 5d0ed06b5ae..1556250447a 100644 --- a/pkgs/servers/xmpp/prosody/default.nix +++ b/pkgs/servers/xmpp/prosody/default.nix @@ -11,7 +11,6 @@ with lib; - let luaEnv = lua.withPackages(p: with p; [ luasocket luasec luaexpat luafilesystem luabitop luadbi-sqlite3 @@ -22,7 +21,7 @@ let ); in stdenv.mkDerivation rec { - version = "0.11.12"; # also update communityModules + version = "0.11.13"; # also update communityModules pname = "prosody"; # The following community modules are necessary for the nixos module # prosody module to comply with XEP-0423 and provide a working @@ -36,7 +35,7 @@ stdenv.mkDerivation rec { ]; src = fetchurl { url = "https://prosody.im/downloads/source/${pname}-${version}.tar.gz"; - sha256 = "03an206bl3h2lqcgv1wfvc2bqjq6m9vjb2idw0vyvczm43c55kan"; + sha256 = "sha256-OcYbNGoJtRJbYEy5aeFCBsu8uGyBFW/8a6LWJSfPBDI="; }; # A note to all those merging automated updates: Please also update this @@ -44,8 +43,8 @@ stdenv.mkDerivation rec { # version. communityModules = fetchhg { url = "https://hg.prosody.im/prosody-modules"; - rev = "bd0a1f917d98"; - sha256 = "0figx0b0y5zfk5anf16h20y4crjmpb6bkg30vl7p0m594qnyqjcx"; + rev = "54fa2116bbf3"; + sha256 = "sha256-OKZ7tD75q8/GMXruUQ+r9l0BxzdbPHNf41fZ3fHVQVw="; }; nativeBuildInputs = [ makeWrapper ]; @@ -54,7 +53,6 @@ stdenv.mkDerivation rec { ] ++ withExtraLibs; - configureFlags = [ "--ostype=linux" "--with-lua-include=${luaEnv}/include" @@ -89,9 +87,7 @@ stdenv.mkDerivation rec { passthru = { communityModules = withCommunityModules; - tests = { - main = nixosTests.prosody; - }; + tests = { inherit (nixosTests) prosody prosody-mysql; }; }; meta = { diff --git a/pkgs/shells/bash/bash-5.1-patches.nix b/pkgs/shells/bash/bash-5.1-patches.nix index e6e9461bcbe..41eb9271058 100644 --- a/pkgs/shells/bash/bash-5.1-patches.nix +++ b/pkgs/shells/bash/bash-5.1-patches.nix @@ -13,4 +13,8 @@ patch: [ (patch "010" "0amfmvbzsand7bdypylkjdpcp88fa3cplfshn7vyzv2ff2rdgj52") (patch "011" "0yq24abb4fzfxqnwl20b330sxl9lr9ds0nc4yi30f81l94b1y6aq") (patch "012" "165bff97ffih49vfs4mkr5w3z5gn1w6zfyrf773iajkw6v48kw8h") +(patch "013" "1bfmgv3lagbk3aq9a831d29xv7jz4sjq7jhn9hq89limyinvdb67") +(patch "014" "1l43dw4kpddn7l41i8wmj406z9abxky1wb3rk8krcys33g4f0kka") +(patch "015" "1w40vzadzx019v0zhs4q6yqycrk04x1k8xs6qb73vk7ny4p6jdqv") +(patch "016" "0krqqljz4bkp9wrdnwfx51bxkb8rkwf8ivc93as1znx5fr7i96c8") ] diff --git a/pkgs/shells/fish/default.nix b/pkgs/shells/fish/default.nix index 622521781c1..e320b920cfa 100644 --- a/pkgs/shells/fish/default.nix +++ b/pkgs/shells/fish/default.nix @@ -134,7 +134,7 @@ let fish = stdenv.mkDerivation rec { pname = "fish"; - version = "3.3.1"; + version = "3.4.0"; src = fetchurl { # There are differences between the release tarball and the tarball GitHub @@ -144,11 +144,9 @@ let # --version`), as well as the local documentation for all builtins (and # maybe other things). url = "https://github.com/fish-shell/fish-shell/releases/download/${version}/${pname}-${version}.tar.xz"; - sha256 = "sha256-tbTuGlJpdiy76ZOkvWUH5nXkEAzpu+hCFKXusrGfrok="; + sha256 = "sha256-tbSKuEhrGe9xajL39GuIuepTVhVfDpZ+6Z9Ak2RUE8U="; }; - patches = [ ./tests-pcre2-update.patch ]; # should be included in >= 3.4 - # Fix FHS paths in tests postPatch = '' # src/fish_tests.cpp @@ -182,6 +180,10 @@ let rm tests/pexpects/exit.py rm tests/pexpects/job_summary.py rm tests/pexpects/signals.py + '' + lib.optionalString (stdenv.isLinux && stdenv.isAarch64) '' + # pexpect tests are flaky on aarch64-linux + # See https://github.com/fish-shell/fish-shell/issues/8789 + rm tests/pexpects/exit_handlers.py ''; nativeBuildInputs = [ diff --git a/pkgs/shells/fish/plugins/forgit.nix b/pkgs/shells/fish/plugins/forgit.nix index 5fc647c73ee..108489071b2 100644 --- a/pkgs/shells/fish/plugins/forgit.nix +++ b/pkgs/shells/fish/plugins/forgit.nix @@ -2,7 +2,7 @@ buildFishPlugin rec { pname = "forgit"; - version = "unstable-2021-04-09"; + version = "unstable-2021-12-05"; preFixup = '' substituteInPlace $out/share/fish/vendor_conf.d/forgit.plugin.fish \ @@ -13,8 +13,8 @@ buildFishPlugin rec { src = fetchFromGitHub { owner = "wfxr"; repo = "forgit"; - rev = "7806fc3ab37ac479c315eb54b164f67ba9ed17ea"; - sha256 = "sha256-a7wjuqXe3+y5zlgSLk5J31WoORbieFimvtr0FQHRY5M="; + rev = "7b26cd46ac768af51b8dd4b84b6567c4e1c19642"; + sha256 = "sha256-S/alL3CiyedJ8aGhC2Vg9fmLJYcLxDe4EjQns5dZkKM="; }; meta = with lib; { diff --git a/pkgs/shells/fish/plugins/hydro.nix b/pkgs/shells/fish/plugins/hydro.nix index efc85cfcd0b..eddb88a225d 100644 --- a/pkgs/shells/fish/plugins/hydro.nix +++ b/pkgs/shells/fish/plugins/hydro.nix @@ -2,18 +2,18 @@ buildFishPlugin rec { pname = "hydro"; - version = "d4875065ceea226f58ead97dd9b2417937344d6e"; + version = "unstable-2022-02-21"; src = fetchFromGitHub { owner = "jorgebucaran"; repo = "hydro"; - rev = version; + rev = "d4875065ceea226f58ead97dd9b2417937344d6e"; sha256 = "sha256-nXeDnqqOuZyrqGTPEQtYlFvrFvy1bZVMF4CA37b0lsE="; }; meta = with lib; { - description = "Ultra-pure, lag-free prompt with async Git status."; - homepage = "https://github.com/jorgebucaran/hydro`"; + description = "Ultra-pure, lag-free prompt with async Git status"; + homepage = "https://github.com/jorgebucaran/hydro"; license = licenses.mit; maintainers = with maintainers; [ mrhedgehog ]; }; diff --git a/pkgs/shells/fish/tests-pcre2-update.patch b/pkgs/shells/fish/tests-pcre2-update.patch deleted file mode 100644 index 5e0c327c540..00000000000 --- a/pkgs/shells/fish/tests-pcre2-update.patch +++ /dev/null @@ -1,7 +0,0 @@ -Adapted formating to 3.3.1 from -https://github.com/fish-shell/fish-shell/commit/ec8844d834cc9fe626e9fc326c6f5410341d532a ---- a/src/fish_tests.cpp -+++ b/src/fish_tests.cpp -@@ -5726,2 +5725,0 @@ -- {{L"string", L"match", L"-r", L"(?=ab\\K)", L"ab", 0}, STATUS_CMD_OK, L"\n"}, -- {{L"string", L"match", L"-r", L"(?=ab\\K)..(?=cd\\K)", L"abcd", 0}, STATUS_CMD_OK, L"\n"}, diff --git a/pkgs/shells/hilbish/default.nix b/pkgs/shells/hilbish/default.nix index 08ee5d664fa..c3f5d3516cb 100644 --- a/pkgs/shells/hilbish/default.nix +++ b/pkgs/shells/hilbish/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "hilbish"; - version = "1.0.2"; + version = "1.0.4"; src = fetchFromGitHub { owner = "Rosettea"; repo = "Hilbish"; rev = "v${version}"; - sha256 = "sha256-BsN2v6OEWOtk8ENKr5G+lSmNIUA89VfpO+QQoBizx9g="; + sha256 = "sha256-JVAyE6iSfRres2YalQF3CWK5Jtn5HoW6p6RHVbwzoVQ="; fetchSubmodules = true; }; diff --git a/pkgs/shells/zsh/oh-my-zsh/default.nix b/pkgs/shells/zsh/oh-my-zsh/default.nix index 1907745fe8d..03fffa9ba95 100644 --- a/pkgs/shells/zsh/oh-my-zsh/default.nix +++ b/pkgs/shells/zsh/oh-my-zsh/default.nix @@ -5,15 +5,15 @@ , git, nix, nixfmt, jq, coreutils, gnused, curl, cacert }: stdenv.mkDerivation rec { - version = "2022-03-14"; + version = "2022-03-18"; pname = "oh-my-zsh"; - rev = "345976874550efa09fa7e9cdbe1215ce27d1541b"; + rev = "c96fc233c4903ba75fba5bc55e7f91f9dc8e460e"; src = fetchFromGitHub { inherit rev; owner = "ohmyzsh"; repo = "ohmyzsh"; - sha256 = "AxKt84XDqmkwBlUeWsE6Tm0aRxvv0HXRdBf/OXjIyHo="; + sha256 = "HCFbdo08Um3ut9SngtHDbl/w265G6OOb+RF/liE1Rlg="; }; installPhase = '' diff --git a/pkgs/stdenv/default.nix b/pkgs/stdenv/default.nix index 0d328d98ba1..25a593c6743 100644 --- a/pkgs/stdenv/default.nix +++ b/pkgs/stdenv/default.nix @@ -53,6 +53,7 @@ in armv8m-linux = stagesLinux; aarch64-linux = stagesLinux; mipsel-linux = stagesLinux; + mips64el-linux = stagesLinux; powerpc-linux = /* stagesLinux */ stagesNative; powerpc64-linux = stagesLinux; powerpc64le-linux = stagesLinux; diff --git a/pkgs/stdenv/linux/make-bootstrap-tools-cross.nix b/pkgs/stdenv/linux/make-bootstrap-tools-cross.nix index d8ab96952b7..a21f677f117 100644 --- a/pkgs/stdenv/linux/make-bootstrap-tools-cross.nix +++ b/pkgs/stdenv/linux/make-bootstrap-tools-cross.nix @@ -17,6 +17,8 @@ in lib.mapAttrs (n: make) (with lib.systems.examples; { armv6l-musl = muslpi; aarch64-musl = aarch64-multiplatform-musl; riscv64 = riscv64; + mips64el-linux-gnuabin32 = lib.systems.platforms.mips64el-linux-gnuabin32; + mips64el-linux-gnuabi64 = lib.systems.platforms.mips64el-linux-gnuabi64; powerpc64 = ppc64; powerpc64-musl = ppc64-musl; powerpc64le = powernv; diff --git a/pkgs/test/make-wrapper/default.nix b/pkgs/test/make-wrapper/default.nix index 6e70945ee19..62ccd272adf 100644 --- a/pkgs/test/make-wrapper/default.nix +++ b/pkgs/test/make-wrapper/default.nix @@ -64,6 +64,7 @@ runCommand "make-wrapper-test" (mkWrapperBinary { name = "test-run-and-set"; args = [ "--run" "export VAR=foo" "--set" "VAR" "bar" ]; }) (mkWrapperBinary { name = "test-args"; args = [ "--add-flags" "abc" ]; wrapped = wrappedBinaryArgs; }) (mkWrapperBinary { name = "test-prefix"; args = [ "--prefix" "VAR" ":" "abc" ]; }) + (mkWrapperBinary { name = "test-prefix-noglob"; args = [ "--prefix" "VAR" ":" "./*" ]; }) (mkWrapperBinary { name = "test-suffix"; args = [ "--suffix" "VAR" ":" "abc" ]; }) (mkWrapperBinary { name = "test-prefix-and-suffix"; args = [ "--prefix" "VAR" ":" "foo" "--suffix" "VAR" ":" "bar" ]; }) (mkWrapperBinary { name = "test-prefix-multi"; args = [ "--prefix" "VAR" ":" "abc:foo:foo" ]; }) @@ -112,6 +113,8 @@ runCommand "make-wrapper-test" # Only append the value once when given multiple times in a parameter # to makeWrapper + mkTest "test-prefix" "VAR=abc" + # --prefix doesn't expand globs + + mkTest "VAR=f?oo test-prefix-noglob" "VAR=./*:f?oo" # --suffix works diff --git a/pkgs/tools/X11/jumpapp/default.nix b/pkgs/tools/X11/jumpapp/default.nix index c152a72a23d..cce6ced7573 100644 --- a/pkgs/tools/X11/jumpapp/default.nix +++ b/pkgs/tools/X11/jumpapp/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "jumpapp"; - version = "1.1"; + version = "1.2"; src = fetchFromGitHub { owner = "mkropat"; repo = "jumpapp"; rev = "v${version}"; - sha256 = "1jrk4mm42sz6ca2gkb6w3dad53d4im4shpgsq8s4vr6xpl3b43ry"; + sha256 = "sha256-9sh0+zpDxwqRGC1jUgGTDdSDRdAFsL12mQ/Opwh/UBc="; }; makeFlags = [ "PREFIX=$(out)" ]; diff --git a/pkgs/tools/admin/aws-vault/default.nix b/pkgs/tools/admin/aws-vault/default.nix index 7462f3506fd..f861a22d812 100644 --- a/pkgs/tools/admin/aws-vault/default.nix +++ b/pkgs/tools/admin/aws-vault/default.nix @@ -7,16 +7,16 @@ }: buildGoModule rec { pname = "aws-vault"; - version = "6.5.0"; + version = "6.6.0"; src = fetchFromGitHub { owner = "99designs"; repo = pname; rev = "v${version}"; - sha256 = "sha256-PYaCbefIglzvBTeFnyz+uQnFxE61cBMWvC3RdV8rq90="; + sha256 = "sha256-wJVbB1MPSKX8/gTX29ThPDxJJRW79+PDwhGDGODtRko="; }; - vendorSha256 = "sha256-GTP6KqAfESrdrtLkerRLmre2tBkG4CXMcfxL/flgya0="; + vendorSha256 = "sha256-h9qGrb2UxtdKewBsWNcir4YfjUNczYP+WiNoWx45w30="; nativeBuildInputs = [ installShellFiles makeWrapper ]; diff --git a/pkgs/tools/admin/berglas/default.nix b/pkgs/tools/admin/berglas/default.nix index 8a6bb559041..bf86a5c02ec 100644 --- a/pkgs/tools/admin/berglas/default.nix +++ b/pkgs/tools/admin/berglas/default.nix @@ -1,19 +1,44 @@ { lib, buildGoModule, fetchFromGitHub }: +let + skipTests = { + access = "Access"; + create = "Create"; + delete = "Delete"; + list = "List"; + read = "Read"; + replace = "Replace"; + resolver = "Resolve"; + revoke = "Revoke"; + update = "Update"; + }; + + skipTestsCommand = + builtins.foldl' (acc: goFileName: + let testName = builtins.getAttr goFileName skipTests; in + '' + ${acc} + substituteInPlace pkg/berglas/${goFileName}_test.go \ + --replace "TestClient_${testName}_storage" "SkipClient_${testName}_storage" \ + --replace "TestClient_${testName}_secretManager" "SkipClient_${testName}_secretManager" + '' + ) "" (builtins.attrNames skipTests); +in + buildGoModule rec { pname = "berglas"; - version = "0.5.1"; + version = "0.6.2"; src = fetchFromGitHub { owner = "GoogleCloudPlatform"; repo = pname; rev = "v${version}"; - sha256 = "0y393g36h35zzqyf5b10j6qq2jhvz83j17cmasnv6wbyrb3vnn0n"; + sha256 = "sha256-aLsrrK+z080qn7L2zggA8yD+QqLaSRJLTjWQnFKFogQ="; }; - vendorSha256 = null; + vendorSha256 = "sha256-HjZT0jezJzoEvXuzrjoTv/zSex+xDuGoP1h82CIlX14="; - doCheck = false; + postPatch = skipTestsCommand; meta = with lib; { description = "A tool for managing secrets on Google Cloud"; diff --git a/pkgs/tools/admin/eksctl/default.nix b/pkgs/tools/admin/eksctl/default.nix index 035dfe183e6..0bde787bfe5 100644 --- a/pkgs/tools/admin/eksctl/default.nix +++ b/pkgs/tools/admin/eksctl/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "eksctl"; - version = "0.87.0"; + version = "0.88.0"; src = fetchFromGitHub { owner = "weaveworks"; repo = pname; rev = version; - sha256 = "sha256-909cInKo6X8yzpXlumDYIi8yCYLqr1CVcsGgYSd2pnQ="; + sha256 = "sha256-HngpmCJ2oT+6LKtYGaDmQYjB6ibeIr8AaTZp8w8gftc="; }; - vendorSha256 = "sha256-3pEKG5YW83YMSkAjiJQDW1eQbMl6SkokHTXn+kJ/3l4="; + vendorSha256 = "sha256-hF7G5Bh87gf2gpaorBh7aICfhq4jPXj6Zay/qMC+cmU="; doCheck = false; diff --git a/pkgs/tools/admin/exoscale-cli/default.nix b/pkgs/tools/admin/exoscale-cli/default.nix index 529871683f6..f1a420b0c10 100644 --- a/pkgs/tools/admin/exoscale-cli/default.nix +++ b/pkgs/tools/admin/exoscale-cli/default.nix @@ -2,13 +2,13 @@ buildGoPackage rec { pname = "exoscale-cli"; - version = "1.51.1"; + version = "1.52.0"; src = fetchFromGitHub { owner = "exoscale"; repo = "cli"; rev = "v${version}"; - sha256 = "sha256-NU4xJTW0KCi8PZAY4cRJijGHCZEn5Z41xNF7+iH01oo="; + sha256 = "sha256-uaJt1QS4nDVliIFo11OhQYvOxJMeda0QGuaGZCPRoWk="; }; goPackagePath = "github.com/exoscale/cli"; diff --git a/pkgs/tools/admin/fits-cloudctl/default.nix b/pkgs/tools/admin/fits-cloudctl/default.nix index b506d1d678f..f53315613e7 100644 --- a/pkgs/tools/admin/fits-cloudctl/default.nix +++ b/pkgs/tools/admin/fits-cloudctl/default.nix @@ -5,13 +5,13 @@ buildGoModule rec { pname = "fits-cloudctl"; - version = "0.10.11"; + version = "0.10.12"; src = fetchFromGitHub { owner = "fi-ts"; repo = "cloudctl"; rev = "v${version}"; - sha256 = "sha256-hGKnQk2OPpHsjbRh/xx3MidbUMio6tYn+oJB0t1a/yM="; + sha256 = "sha256-nFxudeJJ5BkfZxSnRquyATHyHwI+7xwfQxiY8cedtis="; }; vendorSha256 = "sha256-f35Asf9l6ZfixpjMGzesTsxmANreilMxH2CULMH3b2o="; diff --git a/pkgs/tools/admin/lxd/default.nix b/pkgs/tools/admin/lxd/default.nix index f726e5669e3..55267651c9f 100644 --- a/pkgs/tools/admin/lxd/default.nix +++ b/pkgs/tools/admin/lxd/default.nix @@ -11,13 +11,13 @@ buildGoPackage rec { pname = "lxd"; - version = "4.23"; + version = "4.24"; goPackagePath = "github.com/lxc/lxd"; src = fetchurl { url = "https://linuxcontainers.org/downloads/lxd/lxd-${version}.tar.gz"; - sha256 = "sha256-bPzH9MRirgl3b/wkkYIRhEvryvy/5M2Y9LLPqD4IL8U="; + sha256 = "sha256-l/rhWhgmvHOkXL+Omt93X9lwIkiGO4pZl95UlOquslI="; }; postPatch = '' diff --git a/pkgs/tools/admin/stripe-cli/default.nix b/pkgs/tools/admin/stripe-cli/default.nix index 347f6d6f7cf..053446554c7 100644 --- a/pkgs/tools/admin/stripe-cli/default.nix +++ b/pkgs/tools/admin/stripe-cli/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "stripe-cli"; - version = "1.8.0"; + version = "1.8.1"; src = fetchFromGitHub { owner = "stripe"; repo = pname; rev = "v${version}"; - sha256 = "sha256-5Dvmlzhu7xqJAcAdyjPJ/iMooK7N+Qv8J93uEySYb/s="; + sha256 = "sha256-R1w+dVBIPbmBOhtVWKfB4tS+Jp1/tahRk6rifPM53HA="; }; vendorSha256 = "sha256-KgoSJcVUtE4ryJLtQXNCdl51sgO94vyb682OdL5CYw8="; diff --git a/pkgs/tools/admin/syft/default.nix b/pkgs/tools/admin/syft/default.nix index d4d5ee7348b..cf261187c52 100644 --- a/pkgs/tools/admin/syft/default.nix +++ b/pkgs/tools/admin/syft/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "syft"; - version = "0.41.1"; + version = "0.41.6"; src = fetchFromGitHub { owner = "anchore"; repo = pname; rev = "v${version}"; - sha256 = "sha256-6ltEC9LCuE4Rj4TlBwsDI45L92XMuCbEuMDkOk8OkZo="; + sha256 = "sha256-Ebs0IVdcll7bTNjoZalD5Ye0GFXJeas1nPseYLzZxOk="; # populate values that require us to use git. By doing this in postFetch we # can delete .git afterwards and maintain better reproducibility of the src. leaveDotGit = true; @@ -22,7 +22,7 @@ buildGoModule rec { find "$out" -name .git -print0 | xargs -0 rm -rf ''; }; - vendorSha256 = "sha256-13PcAQlHPaQ1n7OiRSEW5H3rDXgUAmKAQGqQM31iyR8="; + vendorSha256 = "sha256-/WGkQfCUDmolGdzNxIZKzZnXWnqO2vvizBLJgO+s4Ak="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/tools/admin/trinsic-cli/default.nix b/pkgs/tools/admin/trinsic-cli/default.nix index d8e084218d4..d280fac0733 100644 --- a/pkgs/tools/admin/trinsic-cli/default.nix +++ b/pkgs/tools/admin/trinsic-cli/default.nix @@ -2,11 +2,11 @@ rustPlatform.buildRustPackage rec { pname = "trinsic-cli"; - version = "1.3.0"; + version = "1.4.0"; src = fetchurl { url = "https://github.com/trinsic-id/sdk/releases/download/v${version}/trinsic-cli-vendor-${version}.tar.gz"; - sha256 = "4ec8a02cf7cd31822668e97befe96f0a7a32b1103abfe27c1bff643d3bf16588"; + sha256 = "sha256-Dxmjbd1Q2JNeET22Fte7bygd+oH3ZfovRTJh5xforuw="; }; cargoVendorDir = "vendor"; diff --git a/pkgs/tools/admin/trivy/default.nix b/pkgs/tools/admin/trivy/default.nix index 00fa4cc6d65..b37bdef882a 100644 --- a/pkgs/tools/admin/trivy/default.nix +++ b/pkgs/tools/admin/trivy/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "trivy"; - version = "0.24.2"; + version = "0.24.4"; src = fetchFromGitHub { owner = "aquasecurity"; repo = pname; rev = "v${version}"; - sha256 = "sha256-xMLSou+8kIQVEJlkA7ygv623hvETcEAdyFPR3HJr5ZQ="; + sha256 = "sha256-IroWxLfDVkS6mFweQioOxjSBA1yXrcdtqFG0W+Sb8Sc="; }; - vendorSha256 = "sha256-qRkxDvrqMVOsz5r3m3I+E0HAVoUwFykkfGzTz9Qc/S4="; + vendorSha256 = "sha256-OGwqRrhj/+oCCaXnb2s4N6a+vhTZHwe2HidAn0UaFXM="; excludedPackages = "misc"; diff --git a/pkgs/tools/archivers/7zz/default.nix b/pkgs/tools/archivers/7zz/default.nix index c93a750e48f..c4ccae0272e 100644 --- a/pkgs/tools/archivers/7zz/default.nix +++ b/pkgs/tools/archivers/7zz/default.nix @@ -1,4 +1,14 @@ -{ stdenv, lib, fetchurl, p7zip, uasm, useUasm ? stdenv.isx86_64 }: +{ stdenv +, lib +, fetchurl + +, uasm +, useUasm ? stdenv.isx86_64 + + # RAR code is under non-free unRAR license + # see the meta.license section below for more details +, enableUnfree ? false +}: let inherit (stdenv.hostPlatform) system; @@ -14,17 +24,38 @@ stdenv.mkDerivation rec { version = "21.07"; src = fetchurl { - url = "https://7-zip.org/a/7z${lib.replaceStrings [ "." ] [ "" ] version}-src.7z"; - sha256 = "sha256-0QdNVvQVqrmdmeWXp7ZtxFXbpjSa6KTInfdkdbahKEw="; + url = "https://7-zip.org/a/7z${lib.replaceStrings [ "." ] [ "" ] version}-src.tar.xz"; + sha256 = { + free = "sha256-SMM6kQ6AZ05s4miJjMoE4NnsXQ0tlkdWx0q2HKjhaM8="; + unfree = "sha256-IT1ZRAfLjvy6NmELFSykkh7aFBYzELQ5A9E+aDE+Hjk="; + }.${if enableUnfree then "unfree" else "free"}; + downloadToTemp = (!enableUnfree); + # remove the unRAR related code from the src drv + # > the license requires that you agree to these use restrictions, + # > or you must remove the software (source and binary) from your hard disks + # https://fedoraproject.org/wiki/Licensing:Unrar + postFetch = lib.optionalString (!enableUnfree) '' + mkdir tmp + tar xf $downloadedFile -C ./tmp + rm -r ./tmp/CPP/7zip/Compress/Rar* + tar cfJ $out -C ./tmp . \ + --sort=name \ + --mtime="@$SOURCE_DATE_EPOCH" \ + --owner=0 --group=0 --numeric-owner \ + --pax-option=exthdr.name=%d/PaxHeaders/%f,delete=atime,delete=ctime + ''; }; sourceRoot = "CPP/7zip/Bundles/Alone2"; - makeFlags = lib.optionals useUasm [ "MY_ASM=uasm" ]; + makeFlags = + lib.optionals useUasm [ "MY_ASM=uasm" ] ++ + # it's the compression code with the restriction, see DOC/License.txt + lib.optionals (!enableUnfree) [ "DISABLE_RAR_COMPRESS=true" ]; makefile = "../../cmpl_gcc${platformSuffix}.mak"; - nativeBuildInputs = [ p7zip ] ++ lib.optionals useUasm [ uasm ]; + nativeBuildInputs = lib.optionals useUasm [ uasm ]; enableParallelBuilding = true; @@ -40,14 +71,27 @@ stdenv.mkDerivation rec { doInstallCheck = true; installCheckPhase = '' + runHook preInstallCheck + $out/bin/7zz --help | grep ${version} + + runHook postInstallCheck ''; + passthru.updateScript = ./update.sh; + meta = with lib; { description = "Command line archiver utility"; homepage = "https://7-zip.org"; - license = licenses.lgpl21Plus; - maintainers = with maintainers; [ anna328p peterhoeg ]; + license = with licenses; + # 7zip code is largely lgpl2Plus + # CPP/7zip/Compress/LzfseDecoder.cpp is bsd3 + [ lgpl2Plus /* and */ bsd3 ] ++ + # and CPP/7zip/Compress/Rar* are unfree with the unRAR license restriction + # the unRAR compression code is disabled by default + lib.optionals enableUnfree [ unfree ]; + maintainers = with maintainers; [ anna328p peterhoeg jk ]; platforms = platforms.linux; + mainProgram = "7zz"; }; } diff --git a/pkgs/tools/archivers/7zz/update.sh b/pkgs/tools/archivers/7zz/update.sh new file mode 100755 index 00000000000..bbc9804799a --- /dev/null +++ b/pkgs/tools/archivers/7zz/update.sh @@ -0,0 +1,50 @@ +#! /usr/bin/env nix-shell +#! nix-shell -i bash -p coreutils gnused curl jq +set -euo pipefail +cd "$(dirname "${BASH_SOURCE[0]}")" + +DRV_DIR="$PWD" + +OLD_VERSION="$(sed -nE 's/\s*version = "(.*)".*/\1/p' ./default.nix)" + +NEW_VERSION="$(curl "https://sourceforge.net/projects/sevenzip/best_release.json" | jq '.platform_releases.linux.filename' -r | cut -d/ -f3)" + +echo "comparing versions $OLD_VERSION => $NEW_VERSION" +if [[ "$OLD_VERSION" == "$NEW_VERSION" ]]; then + echo "Already up to date! Doing nothing" + exit 0 +fi + +NIXPKGS_ROOT="$(realpath "$DRV_DIR/../../../..")" + +echo "getting free source hash" +OLD_FREE_HASH="$(nix-instantiate --eval --strict -E "with import $NIXPKGS_ROOT {}; _7zz.src.drvAttrs.outputHash" | tr -d '"')" +echo "getting unfree source hash" +OLD_UNFREE_HASH="$(nix-instantiate --eval --strict -E "with import $NIXPKGS_ROOT {}; (_7zz.override { enableUnfree = true; }).src.drvAttrs.outputHash" | tr -d '"')" + +NEW_VERSION_FORMATTED="$(echo "$NEW_VERSION" | tr -d '.')" +URL="https://7-zip.org/a/7z${NEW_VERSION_FORMATTED}-src.tar.xz" + + +NEW_FREE_HASH=$(nix-prefetch -f "$NIXPKGS_ROOT" -E "_7zz.src" --url "$URL") + +NEW_UNFREE_OUT=$(nix-prefetch -f "$NIXPKGS_ROOT" -E "(_7zz.override { enableUnfree = true; }).src" --url "$URL" --output raw --print-path) +# first line of raw output is the hash +NEW_UNFREE_HASH="$(echo "$NEW_UNFREE_OUT" | sed -n 1p)" +# second line of raw output is the src path +NEW_UNFREE_SRC="$(echo "$NEW_UNFREE_OUT" | sed -n 2p)" +# make sure to nuke the unfree src from the updater's machine +# > the license requires that you agree to these use restrictions, or you must remove the software (source and binary) from your hard disks +# https://fedoraproject.org/wiki/Licensing:Unrar +nix-store --delete "$NEW_UNFREE_SRC" + + +echo "updating version" +sed -i "s/version = \"$OLD_VERSION\";/version = \"$NEW_VERSION\";/" "$DRV_DIR/default.nix" + +echo "updating free hash" +sed -i "s@free = \"$OLD_FREE_HASH\";@free = \"$NEW_FREE_HASH\";@" "$DRV_DIR/default.nix" +echo "updating unfree hash" +sed -i "s@unfree = \"$OLD_UNFREE_HASH\";@unfree = \"$NEW_UNFREE_HASH\";@" "$DRV_DIR/default.nix" + +echo "done" diff --git a/pkgs/tools/archivers/p7zip/default.nix b/pkgs/tools/archivers/p7zip/default.nix index 7f892a44da5..5e92553b636 100644 --- a/pkgs/tools/archivers/p7zip/default.nix +++ b/pkgs/tools/archivers/p7zip/default.nix @@ -8,7 +8,18 @@ stdenv.mkDerivation rec { owner = "jinfeihan57"; repo = pname; rev = "v${version}"; - sha256 = "sha256-19F4hPV0nKVuFZNbOcXrcA1uW6Y3HQolaHVIYXGmh18="; + sha256 = { + free = "sha256-DrBuf2VPdcprHI6pMSmL7psm2ofOrUf0Oj0qwMjXzkk="; + unfree = "sha256-19F4hPV0nKVuFZNbOcXrcA1uW6Y3HQolaHVIYXGmh18="; + }.${if enableUnfree then "unfree" else "free"}; + # remove the unRAR related code from the src drv + # > the license requires that you agree to these use restrictions, + # > or you must remove the software (source and binary) from your hard disks + # https://fedoraproject.org/wiki/Licensing:Unrar + extraPostFetch = lib.optionalString (!enableUnfree) '' + rm -r $out/CPP/7zip/Compress/Rar* + find $out -name makefile'*' -exec sed -i '/Rar/d' {} + + ''; }; # Default makefile is full of impurities on Darwin. The patch doesn't hurt Linux so I'm leaving it unconditional @@ -25,11 +36,6 @@ stdenv.mkDerivation rec { substituteInPlace makefile.machine \ --replace 'CC=gcc' 'CC=${stdenv.cc.targetPrefix}gcc' \ --replace 'CXX=g++' 'CXX=${stdenv.cc.targetPrefix}g++' - '' + lib.optionalString (!enableUnfree) '' - # Remove non-free RAR source code - # (see DOC/License.txt, https://fedoraproject.org/wiki/Licensing:Unrar) - rm -r CPP/7zip/Compress/Rar* - find . -name makefile'*' -exec sed -i '/Rar/d' {} + ''; makeFlags = [ "DEST_HOME=${placeholder "out"}" ]; @@ -46,13 +52,20 @@ stdenv.mkDerivation rec { NIX_CFLAGS_COMPILE = lib.optionalString stdenv.cc.isClang "-Wno-error=c++11-narrowing"; - meta = { + passthru.updateScript = ./update.sh; + + meta = with lib; { homepage = "https://github.com/jinfeihan57/p7zip"; description = "A new p7zip fork with additional codecs and improvements (forked from https://sourceforge.net/projects/p7zip/)"; - platforms = lib.platforms.unix; - maintainers = [ lib.maintainers.raskin ]; + license = with licenses; + # p7zip code is largely lgpl2Plus + # CPP/7zip/Compress/LzfseDecoder.cpp is bsd3 + [ lgpl2Plus /* and */ bsd3 ] ++ + # and CPP/7zip/Compress/Rar* are unfree with the unRAR license restriction + # the unRAR compression code is disabled by default + lib.optionals enableUnfree [ unfree ]; + maintainers = with maintainers; [ raskin jk ]; + platforms = platforms.unix; mainProgram = "7z"; - # RAR code is under non-free UnRAR license, but we remove it - license = if enableUnfree then lib.licenses.unfree else lib.licenses.lgpl2Plus; }; } diff --git a/pkgs/tools/archivers/p7zip/update.sh b/pkgs/tools/archivers/p7zip/update.sh new file mode 100755 index 00000000000..0d4b91e56e8 --- /dev/null +++ b/pkgs/tools/archivers/p7zip/update.sh @@ -0,0 +1,47 @@ +#! /usr/bin/env nix-shell +#! nix-shell -i bash -p coreutils gnused curl jq +set -euo pipefail +cd "$(dirname "${BASH_SOURCE[0]}")" + +DRV_DIR="$PWD" + +OLD_VERSION="$(sed -nE 's/\s*version = "(.*)".*/\1/p' ./default.nix)" + +NEW_VERSION="$(curl https://api.github.com/repos/jinfeihan57/p7zip/releases/latest | jq .tag_name -r | tr -d 'v')" + +echo "comparing versions $OLD_VERSION => $NEW_VERSION" +if [[ "$OLD_VERSION" == "$NEW_VERSION" ]]; then + echo "Already up to date! Doing nothing" + exit 0 +fi + +NIXPKGS_ROOT="$(realpath "$DRV_DIR/../../../..")" + +echo "getting free source hash" +OLD_FREE_HASH="$(nix-instantiate --eval --strict -E "with import $NIXPKGS_ROOT {}; p7zip.src.drvAttrs.outputHash" | tr -d '"')" +echo "getting unfree source hash" +OLD_UNFREE_HASH="$(nix-instantiate --eval --strict -E "with import $NIXPKGS_ROOT {}; (p7zip.override { enableUnfree = true; }).src.drvAttrs.outputHash" | tr -d '"')" + + +NEW_FREE_HASH=$(nix-prefetch -f "$NIXPKGS_ROOT" -E "p7zip.src" --rev "v$NEW_VERSION") + +NEW_UNFREE_OUT=$(nix-prefetch -f "$NIXPKGS_ROOT" -E "(p7zip.override { enableUnfree = true; }).src" --rev "v$NEW_VERSION" --output raw --print-path) +# first line of raw output is the hash +NEW_UNFREE_HASH="$(echo "$NEW_UNFREE_OUT" | sed -n 1p)" +# second line of raw output is the src path +NEW_UNFREE_SRC="$(echo "$NEW_UNFREE_OUT" | sed -n 2p)" +# make sure to nuke the unfree src from the updater's machine +# > the license requires that you agree to these use restrictions, or you must remove the software (source and binary) from your hard disks +# https://fedoraproject.org/wiki/Licensing:Unrar +nix-store --delete "$NEW_UNFREE_SRC" + + +echo "updating version" +sed -i "s/version = \"$OLD_VERSION\";/version = \"$NEW_VERSION\";/" "$DRV_DIR/default.nix" + +echo "updating free hash" +sed -i "s@free = \"$OLD_FREE_HASH\";@free = \"$NEW_FREE_HASH\";@" "$DRV_DIR/default.nix" +echo "updating unfree hash" +sed -i "s@unfree = \"$OLD_UNFREE_HASH\";@unfree = \"$NEW_UNFREE_HASH\";@" "$DRV_DIR/default.nix" + +echo "done" diff --git a/pkgs/tools/backup/autorestic/default.nix b/pkgs/tools/backup/autorestic/default.nix index 3837c55655e..b1d863c1cf1 100644 --- a/pkgs/tools/backup/autorestic/default.nix +++ b/pkgs/tools/backup/autorestic/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "autorestic"; - version = "1.5.6"; + version = "1.5.7"; src = fetchFromGitHub { owner = "cupcakearmy"; repo = pname; rev = "v${version}"; - sha256 = "sha256-NhKAxybPLBR1Kaw2d4xI8WKS4cG0yAMHbUBDWgr5T0A="; + sha256 = "sha256-o3SO3y26ur16D20rTYtzfyZWNDbeOzvj/BpMykvG698="; }; - vendorSha256 = "sha256-WzmgV0wUsGfMVeho6M8wXJKD9adaAKRYmaJYaAcXwFc="; + vendorSha256 = "sha256-qYXdRpQT7x+Y5h8PuKGjsANXLqjNlsPKO76GQhnufTU="; nativeBuildInputs = [ installShellFiles ]; diff --git a/pkgs/tools/backup/btrbk/default.nix b/pkgs/tools/backup/btrbk/default.nix index b04263a7168..d9f336c86d4 100644 --- a/pkgs/tools/backup/btrbk/default.nix +++ b/pkgs/tools/backup/btrbk/default.nix @@ -18,11 +18,11 @@ stdenv.mkDerivation rec { pname = "btrbk"; - version = "0.32.0"; + version = "0.32.1"; src = fetchurl { url = "https://digint.ch/download/btrbk/releases/${pname}-${version}.tar.xz"; - sha256 = "HmvNtIgFfeaiFuSRobWlcJqusPSYtqAqx+79+CeNVDQ="; + sha256 = "flQf1KTybPImDoD+iNe+P+u1rOiYxXjQoltuGPWuX3g="; }; nativeBuildInputs = [ asciidoctor makeWrapper ]; diff --git a/pkgs/tools/backup/bupstash/default.nix b/pkgs/tools/backup/bupstash/default.nix index 91876f68d4a..0d3550c05bc 100644 --- a/pkgs/tools/backup/bupstash/default.nix +++ b/pkgs/tools/backup/bupstash/default.nix @@ -1,16 +1,16 @@ { lib, fetchFromGitHub, installShellFiles, rustPlatform, ronn, pkg-config, libsodium }: rustPlatform.buildRustPackage rec { pname = "bupstash"; - version = "0.10.3"; + version = "0.11.0"; src = fetchFromGitHub { owner = "andrewchambers"; repo = pname; rev = "v${version}"; - sha256 = "sha256-YN5pIXJRTQXqFGuXvyoSlYJEjAZ4wIYEKjEeF8qIJCI="; + sha256 = "sha256-9yWQQ8uzDkN3Pi2OiEn+oEazc3nH53dF2GswBCu8d3c="; }; - cargoSha256 = "sha256-Erpg+Sktx+L2X9k6g1ngOyM8MNoucGcScOSPMB7vld8="; + cargoSha256 = "sha256-JAclSUFuQk768cgDEvG1rxux2xBGHl1d/NAoxw161YU="; nativeBuildInputs = [ ronn pkg-config installShellFiles ]; buildInputs = [ libsodium ]; diff --git a/pkgs/tools/filesystems/btrfs-progs/default.nix b/pkgs/tools/filesystems/btrfs-progs/default.nix index 28733f8ed77..c51cc12da36 100644 --- a/pkgs/tools/filesystems/btrfs-progs/default.nix +++ b/pkgs/tools/filesystems/btrfs-progs/default.nix @@ -7,11 +7,11 @@ stdenv.mkDerivation rec { pname = "btrfs-progs"; - version = "5.16"; + version = "5.16.1"; src = fetchurl { url = "mirror://kernel/linux/kernel/people/kdave/btrfs-progs/btrfs-progs-v${version}.tar.xz"; - sha256 = "0cqqlcq9bywfi3cpg5ivxiv7p9v6z1r6k4nnmin24mj1kp8krarq"; + sha256 = "sha256-PaTaU2HPhr3dqA7bTE8w6gdstOvsKZBPoIr8kw754ag="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/filesystems/dosfstools/default.nix b/pkgs/tools/filesystems/dosfstools/default.nix index 14d054364fd..75a39fdfe92 100644 --- a/pkgs/tools/filesystems/dosfstools/default.nix +++ b/pkgs/tools/filesystems/dosfstools/default.nix @@ -1,21 +1,30 @@ -{ lib, stdenv, fetchFromGitHub, autoreconfHook, pkg-config, libiconv }: +{ lib, stdenv, fetchFromGitHub, autoreconfHook, pkg-config, libiconv, gettext, xxd }: stdenv.mkDerivation rec { pname = "dosfstools"; - version = "4.1"; + version = "4.2"; src = fetchFromGitHub { owner = "dosfstools"; repo = "dosfstools"; rev = "v${version}"; - sha256 = "1a2zn1655d5f1m6jp9vpn3bp8yfxhcmxx3mx23ai9hmxiydiykr1"; + sha256 = "sha256-2gxB0lQixiHOHw8uTetHekaM57fvUd9zOzSxWnvUz/c="; }; nativeBuildInputs = [ autoreconfHook pkg-config ] ++ lib.optional stdenv.isDarwin libiconv; + # configure.ac:75: error: required file './config.rpath' not found + # https://github.com/dosfstools/dosfstools/blob/master/autogen.sh + postPatch = '' + cp ${gettext}/share/gettext/config.rpath config.rpath + ''; + configureFlags = [ "--enable-compat-symlinks" ]; + checkInputs = [ xxd ]; + doCheck = true; + meta = { description = "Utilities for creating and checking FAT and VFAT file systems"; homepage = "https://github.com/dosfstools/dosfstools"; diff --git a/pkgs/tools/graphics/wkhtmltopdf-bin/default.nix b/pkgs/tools/graphics/wkhtmltopdf-bin/default.nix new file mode 100644 index 00000000000..3c2b446a8e1 --- /dev/null +++ b/pkgs/tools/graphics/wkhtmltopdf-bin/default.nix @@ -0,0 +1,51 @@ +{ stdenv, lib, fetchurl, wkhtmltopdf, xar, cpio }: + +stdenv.mkDerivation rec { + + pname = "wkhtmltopdf-bin"; + version = "0.12.6-1"; + sha256 = "1db59kdprzpmvdj1bg47lmfgi3zlvzvqif11sbym9hw61xy6gp3d"; + src = fetchurl { + url = + "https://github.com/wkhtmltopdf/packaging/releases/download/${version}/wkhtmltox-${version}.macos-cocoa.pkg"; + inherit sha256; + }; + + buildInputs = [ xar cpio ]; + + unpackPhase = '' + xar -xf $src + zcat Payload | cpio -i + tar -xf usr/local/share/wkhtmltox-installer/wkhtmltox.tar.gz + ''; + + installPhase = '' + mkdir -p $out + cp -r bin include lib share $out/ + ''; + + dontStrip = true; + + doInstallCheck = true; + + installCheckPhase = '' + $out/bin/wkhtmltopdf --version + ''; + + meta = with lib; { + homepage = "https://wkhtmltopdf.org/"; + description = + "Tools for rendering web pages to PDF or images (binary package)"; + longDescription = '' + wkhtmltopdf and wkhtmltoimage are open source (LGPL) command line tools + to render HTML into PDF and various image formats using the QT Webkit + rendering engine. These run entirely "headless" and do not require a + display or display service. + + There is also a C library, if you're into that kind of thing. + ''; + license = licenses.gpl3Plus; + maintainers = with maintainers; [ nbr ]; + platforms = [ "x86_64-darwin" ]; + }; +} diff --git a/pkgs/tools/inputmethods/ibus/default.nix b/pkgs/tools/inputmethods/ibus/default.nix index 50b9dba51d3..0f4dde0a416 100644 --- a/pkgs/tools/inputmethods/ibus/default.nix +++ b/pkgs/tools/inputmethods/ibus/default.nix @@ -1,6 +1,7 @@ { lib, stdenv , substituteAll , fetchurl +, fetchpatch , fetchFromGitHub , autoreconfHook , gettext @@ -9,12 +10,14 @@ , vala , wrapGAppsHook , dbus +, systemd , dconf ? null , glib , gdk-pixbuf , gobject-introspection , gtk2 , gtk3 +, gtk4 , gtk-doc , runCommand , isocodes @@ -60,16 +63,22 @@ in stdenv.mkDerivation rec { pname = "ibus"; - version = "1.5.24"; + version = "1.5.26"; src = fetchFromGitHub { owner = "ibus"; repo = "ibus"; rev = version; - sha256 = "sha256-1qx06MlEUjSS067FdQG1Bdi4ZAh3hPcNjUX5PIiC3Sk="; + sha256 = "7Vuj4Gyd+dLUoCkR4SPkfGPwVQPRo2pHk0pRAsmtjxc="; }; patches = [ + # Fixes systemd unit installation path https://github.com/ibus/ibus/pull/2388 + (fetchpatch { + url = "https://github.com/ibus/ibus/commit/33b4b3932bfea476a841f8df99e20049b83f4b0e.patch"; + sha256 = "kh8SBR+cqsov/B0A2YXLJVq1F171qoSRUKbBPHjPRHI="; + }) + (substituteAll { src = ./fix-paths.patch; pythonInterpreter = python3Runtime.interpreter; @@ -94,6 +103,7 @@ stdenv.mkDerivation rec { (enableFeature enablePython2Library "python-library") (enableFeature enablePython2Library "python2") # XXX: python2 library does not work anyway (enableFeature enableUI "ui") + "--enable-gtk4" "--enable-install-tests" "--with-unicode-emoji-dir=${unicode-emoji}/share/unicode/emoji" "--with-emoji-annotation-dir=${cldr-emoji-annotation}/share/unicode/cldr/common/annotations" @@ -123,12 +133,14 @@ stdenv.mkDerivation rec { buildInputs = [ dbus + systemd dconf gdk-pixbuf gobject-introspection python3.pkgs.pygobject3 # for pygobject overrides gtk2 gtk3 + gtk4 isocodes json-glib libnotify diff --git a/pkgs/tools/inputmethods/ibus/fix-paths.patch b/pkgs/tools/inputmethods/ibus/fix-paths.patch index 60269c6c241..340ec22130f 100644 --- a/pkgs/tools/inputmethods/ibus/fix-paths.patch +++ b/pkgs/tools/inputmethods/ibus/fix-paths.patch @@ -1,6 +1,8 @@ +diff --git a/configure.ac b/configure.ac +index a3cdb2da..cade9466 100644 --- a/configure.ac +++ b/configure.ac -@@ -429,11 +429,11 @@ +@@ -469,11 +469,11 @@ PKG_CHECK_EXISTS([pygobject-3.0 >= $PYGOBJECT_REQUIRED], if test "x$enable_pygobject" = "xyes"; then PKG_CHECK_MODULES(PYTHON, [pygobject-3.0 >= $PYGOBJECT_REQUIRED]) @@ -14,7 +16,7 @@ AC_SUBST(py2overridesdir) fi fi -@@ -462,7 +462,7 @@ +@@ -502,7 +502,7 @@ if test x"$enable_python_library" = x"yes"; then PYTHON2_VERSION=`$PYTHON2 -c "import sys; sys.stdout.write(sys.version[[:3]])"` PYTHON2_LIBDIR="$PYTHON2_PREFIX/lib/python$PYTHON2_VERSION" python2dir="$PYTHON2_LIBDIR/site-packages" @@ -23,9 +25,11 @@ AC_SUBST(pkgpython2dir) else enable_python_library="no (disabled, use --enable-python-library to enable)" +diff --git a/data/dconf/Makefile.am b/data/dconf/Makefile.am +index 5360f033..6d5e726f 100644 --- a/data/dconf/Makefile.am +++ b/data/dconf/Makefile.am -@@ -50,7 +50,7 @@ +@@ -50,7 +50,7 @@ man_5dir = $(mandir)/man5 install-data-hook: if test -z "$(DESTDIR)"; then \ @@ -34,12 +38,14 @@ fi EXTRA_DIST = \ +diff --git a/setup/ibus-setup.in b/setup/ibus-setup.in +index 474ce8a8..ee30808e 100644 --- a/setup/ibus-setup.in +++ b/setup/ibus-setup.in -@@ -27,5 +27,5 @@ +@@ -27,5 +27,5 @@ export IBUS_PREFIX=@prefix@ export IBUS_DATAROOTDIR=@datarootdir@ export IBUS_LOCALEDIR=@localedir@ export IBUS_LIBEXECDIR=${libexecdir} --exec ${PYTHON:-@PYTHON@} @prefix@/share/ibus/setup/main.py $@ -+exec @pythonInterpreter@ @prefix@/share/ibus/setup/main.py $@ +-exec ${PYTHON:-@PYTHON@} @prefix@/share/ibus/setup/main.py "$@" ++exec @pythonInterpreter@ @prefix@/share/ibus/setup/main.py "$@" diff --git a/pkgs/tools/misc/apkeep/default.nix b/pkgs/tools/misc/apkeep/default.nix index d405302282f..ef7699ccf28 100644 --- a/pkgs/tools/misc/apkeep/default.nix +++ b/pkgs/tools/misc/apkeep/default.nix @@ -2,14 +2,14 @@ rustPlatform.buildRustPackage rec { pname = "apkeep"; - version = "0.9.0"; + version = "0.10.0"; src = fetchCrate { inherit pname version; - sha256 = "sha256-ST1ifON25mizKZQX3fKeqBloXWW9LXDq5JkZIeiguRY="; + sha256 = "14vm3b2gbmn9pil0aagwchn4kyvi9311id6qv4a376qfb6r1aybf"; }; - cargoSha256 = "sha256-/Xh1s4PO336B1ioKe0IKVGDACpMuXOpxA82U6zn2lj0="; + cargoSha256 = "0i8wzc58ji317kjdw3ls1908z4bqlh1cgjph0fxsvs5i552qjkzp"; prePatch = '' rm .cargo/config.toml diff --git a/pkgs/tools/misc/broadlink-cli/default.nix b/pkgs/tools/misc/broadlink-cli/default.nix index b71b5b444e3..ee99e643b1f 100644 --- a/pkgs/tools/misc/broadlink-cli/default.nix +++ b/pkgs/tools/misc/broadlink-cli/default.nix @@ -2,7 +2,7 @@ python3Packages.buildPythonApplication rec { pname = "broadlink-cli"; - version = "0.18.0"; + version = "0.18.1"; # the tools are available as part of the source distribution from GH but # not pypi, so we have to fetch them here. @@ -10,7 +10,7 @@ python3Packages.buildPythonApplication rec { owner = "mjg59"; repo = "python-broadlink"; rev = version; - sha256 = "0nh9rn1zpc44qsc50360ycg02gwbgq59784mnkp01nhavnwwwx10"; + sha256 = "sha256-x7RVCu5xOwhUOxXIHP7ZAe1/9F9ecf9RgL9I53e9Mcw="; }; format = "other"; diff --git a/pkgs/tools/misc/chezmoi/default.nix b/pkgs/tools/misc/chezmoi/default.nix index 787e4248d46..4ffffa63609 100644 --- a/pkgs/tools/misc/chezmoi/default.nix +++ b/pkgs/tools/misc/chezmoi/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "chezmoi"; - version = "2.13.1"; + version = "2.14.0"; src = fetchFromGitHub { owner = "twpayne"; repo = "chezmoi"; rev = "v${version}"; - sha256 = "sha256-Ui9zj/PI8vYkbT8M13dZ1N4sxhM8fo8ZVeOP9Oa35xg="; + sha256 = "sha256-WxOpmowRP8KSxxjW4JNQlQL6jZ2EhvpNb87NgeSO890="; }; - vendorSha256 = "sha256-6+T0UQDrCnoRZkMajyw50eH/AFIUzCgxCkWVmTfycD0="; + vendorSha256 = "sha256-ord4jHjgiW+Z2OD/x2ZAFOJYLyoB7Tja6SOd+JqxWDM="; doCheck = false; diff --git a/pkgs/tools/misc/diffoscope/default.nix b/pkgs/tools/misc/diffoscope/default.nix index 7f1655b9843..17f57d31ab8 100644 --- a/pkgs/tools/misc/diffoscope/default.nix +++ b/pkgs/tools/misc/diffoscope/default.nix @@ -50,7 +50,7 @@ python3Packages.buildPythonApplication rec { xz zip zstd ] ++ (with python3Packages; [ - argcomplete black debian defusedxml jsondiff jsbeautifier libarchive-c + argcomplete debian defusedxml jsondiff jsbeautifier libarchive-c python_magic progressbar33 pypdf2 rpm tlsh ]) ++ lib.optionals stdenv.isLinux [ python3Packages.pyxattr acl cdrkit dtc ] @@ -66,20 +66,19 @@ python3Packages.buildPythonApplication rec { installManPage doc/diffoscope.1 ''; - # Disable flaky test and a failing one disabledTests = [ + # Disable flaky test and a failing one "test_android_manifest" "test_sbin_added_to_path" "test_diff_meta" "test_diff_meta2" "test_obj_no_differences" - # Failing because of file-v5.40 has a slightly different output. - # Upstream issue: https://salsa.debian.org/reproducible-builds/diffoscope/-/issues/271 - "test_text_proper_indentation" - # fails because it fails to determine llvm version "test_item3_deflate_llvm_bitcode" + + # disable formatting tests because they can break on black updates + "test_code_is_black_clean" ] ++ lib.optionals stdenv.isDarwin [ # Disable flaky tests on Darwin "test_non_unicode_filename" diff --git a/pkgs/tools/misc/findutils/default.nix b/pkgs/tools/misc/findutils/default.nix index 8c8b8c7b2b4..3746c4b4657 100644 --- a/pkgs/tools/misc/findutils/default.nix +++ b/pkgs/tools/misc/findutils/default.nix @@ -9,11 +9,11 @@ stdenv.mkDerivation rec { pname = "findutils"; - version = "4.8.0"; + version = "4.9.0"; src = fetchurl { url = "mirror://gnu/findutils/${pname}-${version}.tar.xz"; - sha256 = "0r3i72hnw0a30khlczi9k2c51aamaj6kfmp5mk3844nrjxz7n4jp"; + sha256 = "sha256-or+4wJ1DZ3DtxZ9Q+kg+eFsWGjt7nVR1c8sIBl/UYv4="; }; postPatch = '' diff --git a/pkgs/tools/misc/goreleaser/default.nix b/pkgs/tools/misc/goreleaser/default.nix index ec3f480ebf1..492e8a83a2f 100644 --- a/pkgs/tools/misc/goreleaser/default.nix +++ b/pkgs/tools/misc/goreleaser/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "goreleaser"; - version = "1.6.1"; + version = "1.6.3"; src = fetchFromGitHub { owner = "goreleaser"; repo = pname; rev = "v${version}"; - sha256 = "sha256-MnsIm8E6CR5tEB6Oq35fJKQiPJfqP86/hp0t6lqJ0JE="; + sha256 = "sha256-ZNE+DfQdIlxA6sXMI8DAIQ3x+kcgXoGApUuoPncRfpc="; }; vendorSha256 = "sha256-Kwa2hzsuw3BNLubcqd7Vmpg49P78Yjt3LboLotoGWYM="; diff --git a/pkgs/tools/misc/hashit/default.nix b/pkgs/tools/misc/hashit/default.nix index b9bf5f0ae5f..5971939da17 100644 --- a/pkgs/tools/misc/hashit/default.nix +++ b/pkgs/tools/misc/hashit/default.nix @@ -24,7 +24,6 @@ stdenv.mkDerivation rec { buildInputs = [ gtk3 libgee - pantheon.elementary-icon-theme pantheon.granite ]; diff --git a/pkgs/tools/misc/infracost/default.nix b/pkgs/tools/misc/infracost/default.nix index 293ee08a275..920d4a19e79 100644 --- a/pkgs/tools/misc/infracost/default.nix +++ b/pkgs/tools/misc/infracost/default.nix @@ -2,15 +2,15 @@ buildGoModule rec { pname = "infracost"; - version = "0.9.18"; + version = "0.9.20"; src = fetchFromGitHub { owner = "infracost"; rev = "v${version}"; repo = "infracost"; - sha256 = "sha256-ukFY6Iy7RaUjECbMCMdOkulMdzUlsoBnyRiuzldXVc8="; + sha256 = "sha256-ujoKnf6f9rrPIxvWlzVnC6q+2BxzhpXgb66clgAuC+8="; }; - vendorSha256 = "sha256-D4tXBXtD3FlWvp4GPIuo/2p3MKg81DVPT5pKVOGe/5c="; + vendorSha256 = "sha256-TfO3+pGxR9dPzigkx89a/Ak+tKiBa6Z0a6U4kIdRsSQ="; ldflags = [ "-s" "-w" "-X github.com/infracost/infracost/internal/version.Version=v${version}" ]; @@ -23,9 +23,9 @@ buildGoModule rec { checkPhase = '' runHook preCheck - # Remove tests that require networking - rm cmd/infracost/{breakdown_test,diff_test,run_test}.go - + # remove tests that require networking + rm cmd/infracost/{breakdown,diff,hcl,run}_test.go + # checkFlags aren't correctly passed through via buildGoModule go test $checkFlags ''${ldflags:+-ldflags="$ldflags"} -v -p $NIX_BUILD_CORES ./... runHook postCheck diff --git a/pkgs/tools/misc/license-generator/default.nix b/pkgs/tools/misc/license-generator/default.nix new file mode 100644 index 00000000000..b880c66f971 --- /dev/null +++ b/pkgs/tools/misc/license-generator/default.nix @@ -0,0 +1,20 @@ +{ lib, fetchCrate, rustPlatform }: + +rustPlatform.buildRustPackage rec { + pname = "license-generator"; + version = "0.8.1"; + + src = fetchCrate { + inherit pname version; + sha256 = "sha256-ZVhsbaJJ9WBcQPx2yikIAQJeBXwC6ZAJkfCRmokNV3I="; + }; + + cargoSha256 = "sha256-Yh9q/aYHXUF2eIFpJ7ccgeyIO5mQMgRDCNr+ZyS166Y="; + + meta = with lib; { + description = "Command-line tool for generating license files"; + homepage = "https://github.com/azu/license-generator"; + license = licenses.mit; + maintainers = with maintainers; [ loicreynier ]; + }; +} diff --git a/pkgs/tools/misc/man-db/default.nix b/pkgs/tools/misc/man-db/default.nix index d495c912f59..7263e4de336 100644 --- a/pkgs/tools/misc/man-db/default.nix +++ b/pkgs/tools/misc/man-db/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "man-db"; - version = "2.9.4"; + version = "2.10.1"; src = fetchurl { url = "mirror://savannah/man-db/man-db-${version}.tar.xz"; - sha256 = "sha256-tmyZ7frRatkoyIn4fPdjgCY8FgkyPCgLOp5pY/2xZ1Y="; + sha256 = "sha256-L/2PLoASL+cuYMdAyFHmo+FcmnkhGF60dSwcZygkvtY="; }; outputs = [ "out" "doc" ]; diff --git a/pkgs/tools/misc/miniserve/default.nix b/pkgs/tools/misc/miniserve/default.nix index 89607f13ac9..d24fae2a1fa 100644 --- a/pkgs/tools/misc/miniserve/default.nix +++ b/pkgs/tools/misc/miniserve/default.nix @@ -11,19 +11,27 @@ rustPlatform.buildRustPackage rec { pname = "miniserve"; - version = "0.19.2"; + version = "0.19.3"; src = fetchFromGitHub { owner = "svenstaro"; repo = "miniserve"; rev = "v${version}"; - sha256 = "sha256-/LmLz4hTmOjpR4Bqf+hABh3PSeaO/sSz/EgHp+nM20o="; + hash = "sha256-JlpjDUX8v7sGADhdKNQXoklbl/fw8DT0A6hEaUG61TQ="; }; - cargoSha256 = "sha256-/KL5c5OeflNDKWuE5Gzqgcew9zf8HFjvmBid+mQSqZE="; + cargoSha256 = "sha256-5V8+Mcuu3fxG399QjW++/uWpPMvVWBfhI/L/6pmbkVY="; - nativeBuildInputs = [ installShellFiles pkg-config zlib ]; - buildInputs = lib.optionals stdenv.isDarwin [ libiconv Security ]; + nativeBuildInputs = [ + installShellFiles + pkg-config + zlib + ]; + + buildInputs = lib.optionals stdenv.isDarwin [ + libiconv + Security + ]; checkFlags = [ "--skip=bind_ipv4_ipv6::case_2" @@ -38,7 +46,7 @@ rustPlatform.buildRustPackage rec { ''; meta = with lib; { - description = "For when you really just want to serve some files over HTTP right now!"; + description = "CLI tool to serve files and directories over HTTP"; homepage = "https://github.com/svenstaro/miniserve"; license = with licenses; [ mit ]; maintainers = with maintainers; [ ]; diff --git a/pkgs/tools/misc/mmv/default.nix b/pkgs/tools/misc/mmv/default.nix index 2c58381100a..1f2d61c6c81 100644 --- a/pkgs/tools/misc/mmv/default.nix +++ b/pkgs/tools/misc/mmv/default.nix @@ -3,13 +3,13 @@ stdenv.mkDerivation rec { pname = "mmv"; - version = "2.1"; + version = "2.3"; src = fetchFromGitHub { owner = "rrthomas"; repo = "mmv"; rev = "v${version}"; - sha256 = "sha256-3XWXOp30P/bOd+c7PC8duidewX8h0hk9VsEUw05dAE4="; + sha256 = "sha256-lujar6QGlhNawGOIfM5RAUa4Sbs0BFgG8rEsCDLqDDE="; fetchSubmodules = true; }; diff --git a/pkgs/tools/misc/mpdscribble/default.nix b/pkgs/tools/misc/mpdscribble/default.nix index fce376bb32e..deb610950e2 100644 --- a/pkgs/tools/misc/mpdscribble/default.nix +++ b/pkgs/tools/misc/mpdscribble/default.nix @@ -13,11 +13,11 @@ stdenv.mkDerivation rec { pname = "mpdscribble"; - version = "0.23"; + version = "0.24"; src = fetchurl { url = "https://www.musicpd.org/download/mpdscribble/${version}/mpdscribble-${version}.tar.xz"; - sha256 = "0s66zqscb44p88cl3kcv5jkjcqsskcnrv7xgrjhzrchf2kcpwf53"; + sha256 = "sha256-9rTLp0izuH5wUnC0kjyOI+lMLgD+3VC+sUaNvi+yqOc="; }; nativeBuildInputs = [ pkg-config meson ninja ]; diff --git a/pkgs/tools/misc/onefetch/default.nix b/pkgs/tools/misc/onefetch/default.nix index 860a9758d4f..d5e77d4461d 100644 --- a/pkgs/tools/misc/onefetch/default.nix +++ b/pkgs/tools/misc/onefetch/default.nix @@ -22,8 +22,15 @@ rustPlatform.buildRustPackage rec { sha256 = "sha256-16oiZAyj6haBk6mgUT25pPDUrCMd7pGo2kAQ0gTe2kM="; }; - # enable pkg-config feature of zstd - cargoPatches = [ ./zstd-pkg-config.patch ]; + cargoPatches = [ + # enable pkg-config feature of zstd + ./zstd-pkg-config.patch + # fix flaky test + (fetchpatch { + url = "https://github.com/o2sh/onefetch/commit/2c1f2f0b2c666f6ce94af0299f88048dd1d83484.patch"; + sha256 = "sha256-pI3yCFYkqOmLgKnCwexv1LcCrCkhi44zhEAx0szaMkg="; + }) + ]; cargoSha256 = "sha256-6wnfn33mfye5o/vY1JQX1Lc4+jzHiKKgGsSLxeJWyFc="; diff --git a/pkgs/tools/misc/opentelemetry-collector/default.nix b/pkgs/tools/misc/opentelemetry-collector/default.nix index 851d4f2dc18..1feb290bb13 100644 --- a/pkgs/tools/misc/opentelemetry-collector/default.nix +++ b/pkgs/tools/misc/opentelemetry-collector/default.nix @@ -12,17 +12,17 @@ let in buildGoModule rec { pname = "opentelemetry-collector"; - version = "0.46.0"; + version = "0.47.0"; src = fetchFromGitHub { owner = "open-telemetry"; repo = "opentelemetry-collector"; rev = "v${version}"; - sha256 = "sha256-ibaA9oCSsId9A4ul5sfM+L8ExBl+Wv7rhGnb6TZ4WJw="; + sha256 = "sha256-1dMdQWV+gxbMc/2iVsB1LCsYxR0bt5AJEvoFq2/KHCg="; }; # there is a nested go.mod sourceRoot = "source/cmd/otelcorecol"; - vendorSha256 = "sha256-Okmsd/skfBmkyLv9oPFH0QvewFZFPpUH2ahWxHt7cy8="; + vendorSha256 = "sha256-ps6fUVg7vhGgy47WTJv/U1qHQ2MGXIWXNZ5Rddo1yQY="; preBuild = '' # set the build version, can't be done via ldflags diff --git a/pkgs/tools/misc/pg_flame/default.nix b/pkgs/tools/misc/pg_flame/default.nix index 7625e67e001..ca58e2a6570 100644 --- a/pkgs/tools/misc/pg_flame/default.nix +++ b/pkgs/tools/misc/pg_flame/default.nix @@ -13,8 +13,6 @@ buildGoModule rec { vendorSha256 = "1rkx20winh66y2m7i7q13jpr83044i2d1pfd5p5l5kkpsix5mra5"; - doCheck = false; - meta = with lib; { description = "Flamegraph generator for Postgres EXPLAIN ANALYZE output"; homepage = "https://github.com/mgartner/pg_flame"; diff --git a/pkgs/tools/misc/plantuml-server/default.nix b/pkgs/tools/misc/plantuml-server/default.nix index 8b6c52446aa..8be9c0eecee 100644 --- a/pkgs/tools/misc/plantuml-server/default.nix +++ b/pkgs/tools/misc/plantuml-server/default.nix @@ -1,69 +1,20 @@ -{ lib, stdenv, fetchFromGitHub, maven, jdk17_headless }: +{ lib, stdenv, fetchurl }: let version = "1.2022.2"; - - src = fetchFromGitHub { - owner = "plantuml"; - repo = "plantuml-server"; - rev = "v${version}"; - sha256 = "sha256-55IBhulFo42jscBFrHM39qA0GRgKBoYNye4q9QkmjsM="; - }; - - # perform fake build to make a fixed-output derivation out of the files downloaded from maven central - deps = stdenv.mkDerivation { - name = "plantuml-server-${version}-deps"; - inherit src; - nativeBuildInputs = [ jdk17_headless maven ]; - buildPhase = '' - runHook preBuild - - while mvn package -Dmaven.repo.local=$out/.m2; [ $? = 1 ]; do - echo "timeout, restart maven to continue downloading" - done - - runHook postBuild - ''; - # keep only *.{pom,jar,sha1,nbm} and delete all ephemeral files with lastModified timestamps inside - installPhase = '' - find $out/.m2 -type f -regex '.+\(\.lastUpdated\|resolver-status\.properties\|_remote\.repositories\)' -delete - ''; - outputHashAlgo = "sha256"; - outputHashMode = "recursive"; - outputHash = "sha256-AheCBX5jFzDHqTI2pCWBIiDESEKMClXlvWIcFvu0goA="; - }; in - stdenv.mkDerivation rec { pname = "plantuml-server"; inherit version; - inherit src; - - nativeBuildInputs = [ jdk17_headless maven ]; - - buildPhase = '' - runHook preBuild - - # maven can output reproducible files after setting project.build.outputTimestamp property - # see https://maven.apache.org/guides/mini/guide-reproducible-builds.html#how-do-i-configure-my-maven-build - # 'maven.repo.local' must be writable so copy it out of nix store - cp -R $src repo - chmod +w -R repo - cd repo - mvn package --offline \ - -Dproject.build.outputTimestamp=0 \ - -Dmaven.repo.local=$(cp -dpR ${deps}/.m2 ./ && chmod +w -R .m2 && pwd)/.m2 - - runHook postBuild - ''; + src = fetchurl { + url = "https://github.com/plantuml/plantuml-server/releases/download/v${version}/plantuml-v${version}.war"; + sha256 = "sha256-h4ulXzZ5L+VPhk2CnZQNxfnEJzWT3B9TNvDEWt4o9Hk="; + }; + dontUnpack = true; installPhase = '' - runHook preInstall - mkdir -p "$out/webapps" - cp "target/plantuml.war" "$out/webapps/plantuml.war" - - runHook postInstall + cp "$src" "$out/webapps/plantuml.war" ''; meta = with lib; { diff --git a/pkgs/tools/misc/rockbox-utility/default.nix b/pkgs/tools/misc/rockbox-utility/default.nix index a75b90d6f54..bf191beca3f 100644 --- a/pkgs/tools/misc/rockbox-utility/default.nix +++ b/pkgs/tools/misc/rockbox-utility/default.nix @@ -1,9 +1,13 @@ -{ lib, stdenv, fetchurl, pkg-config, cryptopp -, libusb1, qtbase, qttools, makeWrapper -, qmake, withEspeak ? false, espeak ? null -, qt5 }: - -let inherit (lib) getDev; in +{ lib +, stdenv +, fetchurl +, cryptopp +, libusb1 +, makeWrapper +, pkg-config +, qt5 +, withEspeak ? false, espeak ? null +}: stdenv.mkDerivation rec { pname = "rockbox-utility"; @@ -11,16 +15,27 @@ stdenv.mkDerivation rec { src = fetchurl { url = "https://download.rockbox.org/rbutil/source/RockboxUtility-v${version}-src.tar.bz2"; - sha256 = "0zm9f01a810y7aq0nravbsl0vs9vargwvxnfl4iz9qsqygwlj69y"; + hash = "sha256-PhlJ+fNY4/Qjoc72zV9WO+kNqF5bZQuwOh4EpAJwqX4="; }; - buildInputs = [ cryptopp libusb1 qtbase qttools ] - ++ lib.optional withEspeak espeak; - nativeBuildInputs = [ makeWrapper pkg-config qmake qt5.wrapQtAppsHook ]; + nativeBuildInputs = [ + makeWrapper + pkg-config + qt5.qmake + qt5.wrapQtAppsHook + ]; + + buildInputs = [ + cryptopp + libusb1 + qt5.qtbase + qt5.qttools + ] + ++ lib.optional withEspeak espeak; postPatch = '' sed -i rbutil/rbutilqt/rbutilqt.pro \ - -e '/^lrelease.commands =/ s|$$\[QT_INSTALL_BINS\]/lrelease -silent|${getDev qttools}/bin/lrelease|' + -e '/^lrelease.commands =/ s|$$\[QT_INSTALL_BINS\]/lrelease -silent|${lib.getDev qt5.qttools}/bin/lrelease|' ''; preConfigure = '' @@ -48,10 +63,10 @@ stdenv.mkDerivation rec { enableParallelBuilding = false; meta = with lib; { - description = "Open source firmware for mp3 players"; homepage = "https://www.rockbox.org"; - license = licenses.gpl2; + description = "Open source firmware for digital music players"; + license = licenses.gpl2Plus; + maintainers = with maintainers; [ AndersonTorres goibhniu ]; platforms = platforms.linux; - maintainers = with maintainers; [ goibhniu ]; }; } diff --git a/pkgs/tools/misc/steampipe/default.nix b/pkgs/tools/misc/steampipe/default.nix index 554822ba8de..74fc37800e9 100644 --- a/pkgs/tools/misc/steampipe/default.nix +++ b/pkgs/tools/misc/steampipe/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "steampipe"; - version = "0.12.2"; + version = "0.13.2"; src = fetchFromGitHub { owner = "turbot"; repo = "steampipe"; rev = "v${version}"; - sha256 = "sha256-xLw3y9DYkei0MoErsMpSDhEK73lK9b13st+DqHvvhys="; + sha256 = "sha256-Ty8yCcxdPa/z1k9xMv8iCybRXfvJKRJIT+oH7MbLWmw="; }; - vendorSha256 = "sha256-hqjjwYBVnuw7Bt2901tPIkfvYLy955IdeMbeSWTjtL0="; + vendorSha256 = "sha256-0jixQcgSXQJAd899EWOUKde5OXZcSZwQfH7LRdQlm7c="; proxyVendor = true; # tests are failing for no obvious reasons diff --git a/pkgs/tools/misc/ttchat/default.nix b/pkgs/tools/misc/ttchat/default.nix new file mode 100644 index 00000000000..c88f4098b76 --- /dev/null +++ b/pkgs/tools/misc/ttchat/default.nix @@ -0,0 +1,23 @@ +{ lib, buildGoModule, fetchFromGitHub }: + +buildGoModule rec { + pname = "ttchat"; + version = "0.1.6"; + + src = fetchFromGitHub { + owner = "atye"; + repo = "ttchat"; + rev = "v${version}"; + sha256 = "sha256-Km8aBThs2h8vVpQQaN/OuDeQcrewhP0hMMRuU8/1Ilk="; + }; + + vendorSha256 = "sha256-pJAwx7RmD2sSHsz1DxtsU7bjC/b0JujlrFeGL6zmTiI="; + + meta = with lib; { + description = "Connect to a Twitch channel's chat from your terminal"; + homepage = "https://github.com/atye/ttchat"; + license = licenses.asl20; + platforms = platforms.linux; + maintainers = with maintainers; [ wolfangaukang ]; + }; +} diff --git a/pkgs/tools/misc/up/default.nix b/pkgs/tools/misc/up/default.nix index 47c504cd1a7..7737c67faa2 100644 --- a/pkgs/tools/misc/up/default.nix +++ b/pkgs/tools/misc/up/default.nix @@ -13,8 +13,6 @@ buildGoModule rec { vendorSha256 = "1q8wfsfl3rz698ck5q5s5z6iw9k134fxxvwipcp2b052n998rcrx"; - doCheck = false; - meta = with lib; { description = "Ultimate Plumber is a tool for writing Linux pipes with instant live preview"; homepage = "https://github.com/akavel/up"; diff --git a/pkgs/tools/misc/youtube-dl/default.nix b/pkgs/tools/misc/youtube-dl/default.nix index 4673ab41654..6b15488f5c6 100644 --- a/pkgs/tools/misc/youtube-dl/default.nix +++ b/pkgs/tools/misc/youtube-dl/default.nix @@ -70,13 +70,13 @@ buildPythonPackage rec { homepage = "https://ytdl-org.github.io/youtube-dl/"; description = "Command-line tool to download videos from YouTube.com and other sites"; longDescription = '' - youtube-dl is a small, Python-based command-line program - to download videos from YouTube.com and a few more sites. - youtube-dl is released to the public domain, which means - you can modify it, redistribute it or use it however you like. + youtube-dl is a small, Python-based command-line program to download + videos from YouTube.com and a few more sites. youtube-dl is released to + the public domain, which means you can modify it, redistribute it or use + it however you like. ''; license = licenses.publicDomain; + maintainers = with maintainers; [ bluescreen303 fpletz ma27 ]; platforms = with platforms; linux ++ darwin; - maintainers = with maintainers; [ bluescreen303 AndersonTorres fpletz ma27 ]; }; } diff --git a/pkgs/tools/misc/ytmdl/default.nix b/pkgs/tools/misc/ytmdl/default.nix index 90a0590b8d9..c2a2a2adf2d 100644 --- a/pkgs/tools/misc/ytmdl/default.nix +++ b/pkgs/tools/misc/ytmdl/default.nix @@ -1,16 +1,17 @@ { lib , python3Packages +, yt-dlp , ffmpeg }: python3Packages.buildPythonApplication rec { pname = "ytmdl"; - version = "2021.08.01"; + version = "2022.03.16"; src = python3Packages.fetchPypi { inherit pname; version = builtins.replaceStrings [ ".0" ] [ "." ] version; - sha256 = "f5ef23dcba89aaf2307baf4ffc2326dc5c02324f646e5e5748219ed328202af4"; + sha256 = "sha256-2lEOgwSi4fAVK+gJXvjWQDBWIb1cODFmUiq0FUfpyXA="; }; postPatch = '' @@ -34,7 +35,7 @@ python3Packages.buildPythonApplication rec { itunespy mutagen pysocks - youtube-dl + yt-dlp ytmusicapi spotipy ]; diff --git a/pkgs/tools/misc/zellij/default.nix b/pkgs/tools/misc/zellij/default.nix index 7fc1c6e335a..4855e979ed6 100644 --- a/pkgs/tools/misc/zellij/default.nix +++ b/pkgs/tools/misc/zellij/default.nix @@ -15,16 +15,16 @@ rustPlatform.buildRustPackage rec { pname = "zellij"; - version = "0.26.0"; + version = "0.26.1"; src = fetchFromGitHub { owner = "zellij-org"; repo = "zellij"; rev = "v${version}"; - sha256 = "sha256-8PgEsRh2nBOIvKeX9SJ853NN8Szb4geKwv2qvTtkMxk="; + sha256 = "sha256-ngCE1DhbbuOu07R69gSlFvDKl5EFtTGOkfr5e4u4Dkw="; }; - cargoSha256 = "sha256-YaqaXn1Ol5RfwAzWi7767vt1je+wqWFtfgxMOSIy9UI="; + cargoSha256 = "sha256-lRnxZiJiq601oOXkxZqVNPXc0miK3TsAyGeVTjTxdhw="; nativeBuildInputs = [ mandown diff --git a/pkgs/tools/networking/boundary/default.nix b/pkgs/tools/networking/boundary/default.nix index 3745856a8c0..c86c9c5fd68 100644 --- a/pkgs/tools/networking/boundary/default.nix +++ b/pkgs/tools/networking/boundary/default.nix @@ -2,7 +2,7 @@ stdenv.mkDerivation rec { pname = "boundary"; - version = "0.7.5"; + version = "0.7.6"; src = let @@ -15,10 +15,10 @@ stdenv.mkDerivation rec { aarch64-darwin = "darwin_arm64"; }; sha256 = selectSystem { - x86_64-linux = "sha256-wqNeeEQhR8cj7Gpbzp7UQV0j+w0peo41uKqgK9BoLH4="; - aarch64-linux = "sha256-HK/6eMBWUW1IbYE5RpInhcQuIw16X9vQEZmOBje9Yzk="; - x86_64-darwin = "sha256-ghgkPlEN9DHFviQzcGS/+oG+9Qqy2AfJ2IEyiSMJwwY="; - aarch64-darwin = "sha256-F4iOCxAm8s34KktuS5PRPkIg9A0179H6zlOM3OuTyUw="; + x86_64-linux = "sha256-nsc8S63OUEo9db/hs9oA53Lk+amIsxB/O4TJCs4zdNw="; + aarch64-linux = "sha256-KttqYuF7xC88L49f7JKKr77FbKBihptoBIoemgFInm0="; + x86_64-darwin = "sha256-ov4CtiWsOU/AWfAo7x99RshW6+eU9lFD5ypo6MKyPM0="; + aarch64-darwin = "sha256-3E9fv8BSu7XXIwRmTrDECLNQKdoeUqitKbsTrXs+tTE="; }; in fetchzip { diff --git a/pkgs/tools/networking/cloudflare-warp/default.nix b/pkgs/tools/networking/cloudflare-warp/default.nix new file mode 100644 index 00000000000..a96b8e005e3 --- /dev/null +++ b/pkgs/tools/networking/cloudflare-warp/default.nix @@ -0,0 +1,48 @@ +{ stdenv, lib, fetchurl, dpkg, autoPatchelfHook, dbus }: + +stdenv.mkDerivation rec { + pname = "cloudflare-warp"; + version = "2022.02.24"; + + src = fetchurl { + url = "https://pkg.cloudflareclient.com/uploads/cloudflare_warp_2022_2_288_1_amd64_a0be7b47b3.deb"; + sha256 = "sha256-gBXF0EfFMT6BC6ts/6PQYJH3AAQSDsFoZGK3RZIqmOA="; + }; + + nativeBuildInputs = [ + dpkg + autoPatchelfHook + ]; + + buildInputs = [ dbus ]; + + dontBuild = true; + dontConfigure = true; + + unpackPhase = '' + dpkg-deb -x ${src} ./ + ''; + + installPhase = '' + runHook preInstall + + mv usr $out + mv lib $out + mv bin $out + + runHook postInstall + ''; + + postInstall = '' + substituteInPlace $out/lib/systemd/system/warp-svc.service \ + --replace "ExecStart=" "ExecStart=$out" + ''; + + meta = with lib; { + description = "Replaces the connection between your device and the Internet with a modern, optimized, protocol"; + homepage = "https://pkg.cloudflareclient.com/packages/cloudflare-warp"; + license = licenses.unfree; + maintainers = with maintainers; [ wolfangaukang ]; + platforms = [ "x86_64-linux" ]; + }; +} diff --git a/pkgs/tools/networking/corerad/default.nix b/pkgs/tools/networking/corerad/default.nix index 03962f1e9e2..df6a6315937 100644 --- a/pkgs/tools/networking/corerad/default.nix +++ b/pkgs/tools/networking/corerad/default.nix @@ -1,17 +1,17 @@ -{ lib, buildGoModule, fetchFromGitHub, nixosTests }: +{ lib, buildGo118Module, fetchFromGitHub, nixosTests }: -buildGoModule rec { +buildGo118Module rec { pname = "corerad"; - version = "1.0.0"; + version = "1.1.1"; src = fetchFromGitHub { owner = "mdlayher"; repo = "corerad"; rev = "v${version}"; - sha256 = "sha256-23f+WJcTf+x9GW+hGUU3/j4Qi9MfcsfQuS7aEU4uGU4="; + sha256 = "sha256-2XPWexpr3xGwnvjT08BVq6uf1haPuZGwKswiy/1Z8vE="; }; - vendorSha256 = "sha256-SSa+yBZjZ+5vRfzfCtNhF+kRyJ/VMgd9uWqKPwIi8+Y="; + vendorSha256 = "sha256-+9KjgbKuAJexdGEKu9hIsHfHsVbKeB5ZtSgFzM2/bOI="; doCheck = false; diff --git a/pkgs/tools/networking/frp/default.nix b/pkgs/tools/networking/frp/default.nix index 1ef3c13172b..e7d2752a94f 100644 --- a/pkgs/tools/networking/frp/default.nix +++ b/pkgs/tools/networking/frp/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "frp"; - version = "0.39.1"; + version = "0.40.0"; src = fetchFromGitHub { owner = "fatedier"; repo = pname; rev = "v${version}"; - sha256 = "sha256-tqdrYrIWbmRn+5iAZKd9GlcmFNQnh3yNxZ95As7+v5Q="; + sha256 = "sha256-W+88Fq9oYDBLCNp+6rc9jACJzky7FCZg/xLDowGGdm0="; }; - vendorSha256 = "sha256-NPnchl+N6DeqMhsOIw2MYD/i2IZzHS9ZqbUOeulgb90="; + vendorSha256 = "sha256-iBjMFOERWQ1aPn+2gEoI9og2ov2LlBVV1sLAZlvqZPM="; doCheck = false; diff --git a/pkgs/tools/networking/hey/default.nix b/pkgs/tools/networking/hey/default.nix index edf91dd311d..d59e58981e7 100644 --- a/pkgs/tools/networking/hey/default.nix +++ b/pkgs/tools/networking/hey/default.nix @@ -13,8 +13,6 @@ buildGoModule rec { vendorSha256 = null; - doCheck = false; - meta = with lib; { description = "HTTP load generator, ApacheBench (ab) replacement"; homepage = "https://github.com/rakyll/hey"; diff --git a/pkgs/tools/networking/httpie/default.nix b/pkgs/tools/networking/httpie/default.nix index f3488ae402b..a6c6ddfe5bb 100644 --- a/pkgs/tools/networking/httpie/default.nix +++ b/pkgs/tools/networking/httpie/default.nix @@ -1,19 +1,20 @@ { lib , fetchFromGitHub , installShellFiles -, python3Packages +, python3 , pandoc }: -python3Packages.buildPythonApplication rec { +python3.pkgs.buildPythonApplication rec { pname = "httpie"; - version = "3.0.2"; + version = "3.1.0"; + format = "setuptools"; src = fetchFromGitHub { owner = "httpie"; repo = "httpie"; rev = version; - sha256 = "sha256-s3IFzEUQmPBocgspVGx1nINkUamsi7tzwW37IqdBMxo="; + hash = "sha256-x7Zucb2i8D4Xbn77eBzSxOAcc2fGg5MFKFiyJhytQ0s="; }; nativeBuildInputs = [ @@ -21,7 +22,7 @@ python3Packages.buildPythonApplication rec { pandoc ]; - propagatedBuildInputs = with python3Packages; [ + propagatedBuildInputs = with python3.pkgs; [ charset-normalizer defusedxml multidict @@ -31,10 +32,11 @@ python3Packages.buildPythonApplication rec { setuptools ]; - checkInputs = with python3Packages; [ + checkInputs = with python3.pkgs; [ mock pytest pytest-httpbin + pytest-lazy-fixture pytestCheckHook responses ]; @@ -65,7 +67,9 @@ python3Packages.buildPythonApplication rec { "httpie.encoding.detect_encoding" ]; - pythonImportsCheck = [ "httpie" ]; + pythonImportsCheck = [ + "httpie" + ]; meta = with lib; { description = "A command line HTTP client whose goal is to make CLI human-friendly"; diff --git a/pkgs/tools/networking/innernet/default.nix b/pkgs/tools/networking/innernet/default.nix index 67f9a9d793b..68ccdfc3870 100644 --- a/pkgs/tools/networking/innernet/default.nix +++ b/pkgs/tools/networking/innernet/default.nix @@ -13,15 +13,15 @@ rustPlatform.buildRustPackage rec { pname = "innernet"; - version = "1.5.3"; + version = "1.5.4"; src = fetchFromGitHub { owner = "tonarino"; repo = "innernet"; rev = "v${version}"; - sha256 = "sha256-dpoSjGtjGJTF/sQ8vbeAUCjnkYqz4zGnfO8br8gJbsQ="; + sha256 = "sha256-CcZ4241EU+ktPbFsuR/sF4yP6xAOFg+oW8thtAQZr/4="; }; - cargoSha256 = "sha256-EmAlm3W9r6pP1VIxeM2UP1ZG9TjopTarckMfLDonr1k="; + cargoSha256 = "sha256-7APUSDxw6X4KJnFvm6xhiHL1D4NTNS2pC/4UVGyjJYY="; nativeBuildInputs = with llvmPackages; [ llvm diff --git a/pkgs/tools/networking/magic-wormhole-rs/Cargo.toml.patch b/pkgs/tools/networking/magic-wormhole-rs/Cargo.toml.patch new file mode 100644 index 00000000000..debb1e26439 --- /dev/null +++ b/pkgs/tools/networking/magic-wormhole-rs/Cargo.toml.patch @@ -0,0 +1,67 @@ +diff --git a/Cargo.lock b/Cargo.lock +index d33b5d6..ddde8ed 100644 +--- a/Cargo.lock ++++ b/Cargo.lock +@@ -150,33 +150,6 @@ dependencies = [ + "winapi 0.3.9", + ] + +-[[package]] +-name = "async-std" +-version = "1.10.0" +-source = "registry+https://github.com/rust-lang/crates.io-index" +-checksum = "f8056f1455169ab86dd47b47391e4ab0cbd25410a70e9fe675544f49bafaf952" +-dependencies = [ +- "async-channel", +- "async-global-executor", +- "async-io", +- "async-lock", +- "crossbeam-utils", +- "futures-channel", +- "futures-core", +- "futures-io", +- "futures-lite", +- "gloo-timers", +- "kv-log-macro", +- "log", +- "memchr", +- "num_cpus", +- "once_cell", +- "pin-project-lite", +- "pin-utils", +- "slab", +- "wasm-bindgen-futures", +-] +- + [[package]] + name = "async-std" + version = "1.10.0" +@@ -230,7 +203,7 @@ version = "0.16.1" + source = "registry+https://github.com/rust-lang/crates.io-index" + checksum = "5682ea0913e5c20780fe5785abacb85a411e7437bf52a1bedb93ddb3972cb8dd" + dependencies = [ +- "async-std 1.10.0 (registry+https://github.com/rust-lang/crates.io-index)", ++ "async-std", + "async-tls", + "futures-io", + "futures-util", +@@ -1154,7 +1127,7 @@ name = "magic-wormhole" + version = "0.3.0" + dependencies = [ + "async-io", +- "async-std 1.10.0 (git+https://github.com/async-rs/async-std)", ++ "async-std", + "async-tungstenite", + "base64", + "bytecodec", +diff --git a/Cargo.toml b/Cargo.toml +index b4ff2c0..d4094af 100644 +--- a/Cargo.toml ++++ b/Cargo.toml +@@ -82,3 +82,6 @@ required-features = ["bin"] + + [profile.release] + overflow-checks = true ++ ++[patch.crates-io] ++async-std = { version = "1.9.0", features = ["attributes", "unstable"], git = "https://github.com/async-rs/async-std" } diff --git a/pkgs/tools/networking/magic-wormhole-rs/default.nix b/pkgs/tools/networking/magic-wormhole-rs/default.nix new file mode 100644 index 00000000000..951a0664376 --- /dev/null +++ b/pkgs/tools/networking/magic-wormhole-rs/default.nix @@ -0,0 +1,32 @@ +{ lib +, stdenv +, fetchFromGitHub +, rustPlatform +}: +rustPlatform.buildRustPackage rec { + name = "magic-wormhole-rs"; + version = "0.3.0"; + + src = fetchFromGitHub { + owner = "magic-wormhole"; + repo = "magic-wormhole.rs"; + rev = version; + sha256 = "sha256-i4vJ6HmtM42m1x1UtOq9xlmhYIa5ZKXUm1rGFNRprmY="; + }; + + # this patch serves as a workaround for the problems of cargo-vendor described in + # https://github.com/NixOS/nixpkgs/issues/30742 + # and can probably be removed once the issue is resolved + cargoPatches = [ ./Cargo.toml.patch ]; + cargoSha256 = "sha256-DG1kyukgzDbolX9Mg9hK1TRyzIWbAX6f54jSM8clj/c="; + + # all tests involve networking and are bound fail + doCheck = false; + + meta = with lib; { + description = "Rust implementation of Magic Wormhole, with new features and enhancements"; + homepage = "https://github.com/magic-wormhole/magic-wormhole.rs"; + license = licenses.eupl12; + maintainers = with maintainers; [ zeri piegames ]; + }; +} diff --git a/pkgs/tools/networking/minio-client/default.nix b/pkgs/tools/networking/minio-client/default.nix index eb73a33e01f..c4a0baf3160 100644 --- a/pkgs/tools/networking/minio-client/default.nix +++ b/pkgs/tools/networking/minio-client/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "minio-client"; - version = "2022-03-09T02-08-36Z"; + version = "2022-03-17T20-25-06Z"; src = fetchFromGitHub { owner = "minio"; repo = "mc"; rev = "RELEASE.${version}"; - sha256 = "sha256-OaV0Xb3nNeZJLayGperQah0JQ7BlGFPWa1//Kt5+EiU="; + sha256 = "sha256-+MfRosEyIaQ5RndpAeK5AXm8EHX2ND7VJcr1NVFs5TI="; }; vendorSha256 = "sha256-Wdw9mZ3UupoJ4yDwS4f3mOmCn+7TvHmx4aRu+96pHM4="; diff --git a/pkgs/tools/networking/netproc/default.nix b/pkgs/tools/networking/netproc/default.nix new file mode 100644 index 00000000000..851f71fcaab --- /dev/null +++ b/pkgs/tools/networking/netproc/default.nix @@ -0,0 +1,25 @@ +{ lib, stdenv, fetchFromGitHub, ncurses }: + +stdenv.mkDerivation rec { + pname = "netproc"; + version = "unstable-2022-02-11"; + + src = fetchFromGitHub { + owner = "berghetti"; + repo = "netproc"; + rev = "87a10ce31ae150847674ad87ef84ef2fd374b420"; + sha256 = "sha256-YSKDOvqWLCrnP1qjmzMuRgjXiXZ9D4AuxXm/3xzS4gc="; + }; + + buildInputs = [ ncurses ]; + + installFlags = [ "prefix=$(out)" ]; + + meta = with lib; { + description = "Tool to monitor network traffic based on processes"; + license = licenses.gpl3; + homepage = "https://github.com/berghetti/netproc"; + platforms = platforms.linux; + maintainers = [ maintainers.azuwis ]; + }; +} diff --git a/pkgs/tools/networking/openapi-generator-cli/unstable.nix b/pkgs/tools/networking/openapi-generator-cli/unstable.nix index 33eb33e10b0..9af28b3e09e 100644 --- a/pkgs/tools/networking/openapi-generator-cli/unstable.nix +++ b/pkgs/tools/networking/openapi-generator-cli/unstable.nix @@ -1,7 +1,7 @@ { callPackage, lib, stdenv, fetchurl, jre, makeWrapper }: let this = stdenv.mkDerivation rec { - version = "6.0.0-2021-01-18"; # Also update the fetchurl link + version = "6.0.0-2022-03-18"; # Also update the fetchurl link pname = "openapi-generator-cli"; jarfilename = "${pname}-${version}.jar"; @@ -11,8 +11,8 @@ let this = stdenv.mkDerivation rec { ]; src = fetchurl { - url = "https://oss.sonatype.org/content/repositories/snapshots/org/openapitools/openapi-generator-cli/6.0.0-SNAPSHOT/openapi-generator-cli-6.0.0-20210118.082537-4.jar"; - sha256 = "1ji3yw9dp4srlgqxvb21vrcp2bzj4himxsmp8l8zid9nxsc1m71x"; + url = "https://oss.sonatype.org/content/repositories/snapshots/org/openapitools/openapi-generator-cli/6.0.0-SNAPSHOT/openapi-generator-cli-6.0.0-20220318.042704-93.jar"; + sha256 = "1h126kpbnpbrsnjrxb09hzb796dwl4g58d6wrh1hhv8svwy5p0bl"; }; dontUnpack = true; diff --git a/pkgs/tools/networking/openvpn/default.nix b/pkgs/tools/networking/openvpn/default.nix index e2805f0ccf0..9200bc3f30e 100644 --- a/pkgs/tools/networking/openvpn/default.nix +++ b/pkgs/tools/networking/openvpn/default.nix @@ -32,7 +32,7 @@ let inherit version; src = fetchurl { - url = "https://swupdate.openvpn.net/community/releases/${pname}-${version}.tar.xz"; + url = "https://swupdate.openvpn.net/community/releases/${pname}-${version}.tar.gz"; inherit sha256; }; @@ -78,12 +78,12 @@ let in { openvpn_24 = generic { - version = "2.4.11"; - sha256 = "06s4m0xvixjhd3azrzbsf4j86kah4xwr2jp6cmcpc7db33rfyyg5"; + version = "2.4.12"; + sha256 = "1vjx82nlkxrgzfiwvmmlnz8ids5m2fiqz7scy1smh3j9jnf2v5b6"; }; openvpn = generic { - version = "2.5.5"; - sha256 = "sha256-EZvWn6AhCDj2zaonNpbcc476IA9FTb4R6237dd+2ADs="; + version = "2.5.6"; + sha256 = "0gdd88rcan9vfiwkzsqn6fxxdim7kb1bsxrcra59c5xksprpwfik"; }; } diff --git a/pkgs/tools/networking/pirate-get/default.nix b/pkgs/tools/networking/pirate-get/default.nix index 112b78dcae8..9b5846d6f76 100644 --- a/pkgs/tools/networking/pirate-get/default.nix +++ b/pkgs/tools/networking/pirate-get/default.nix @@ -4,11 +4,11 @@ with python3Packages; buildPythonApplication rec { pname = "pirate-get"; - version = "0.4.1"; + version = "0.4.2"; src = fetchPypi { inherit pname version; - sha256 = "0pr703fwinr2f4rba86zp57mpf5j2jgvp5n50rc5vy5g7yfwsddm"; + sha256 = "sha256-VtnVyJqrdGXTqcyzpHCOMUI9G7/BkXzihDrBrsxl7Eg="; }; propagatedBuildInputs = [ colorama veryprettytable pyperclip ]; diff --git a/pkgs/tools/networking/tcpdump/default.nix b/pkgs/tools/networking/tcpdump/default.nix index cdb33ab1f1a..6726e5b751a 100644 --- a/pkgs/tools/networking/tcpdump/default.nix +++ b/pkgs/tools/networking/tcpdump/default.nix @@ -27,6 +27,5 @@ stdenv.mkDerivation rec { license = licenses.bsd3; maintainers = with maintainers; [ globin ]; platforms = platforms.unix; - badPlatforms = platforms.darwin; }; } diff --git a/pkgs/tools/networking/tinyssh/default.nix b/pkgs/tools/networking/tinyssh/default.nix index ddd2d460f73..36518357e60 100644 --- a/pkgs/tools/networking/tinyssh/default.nix +++ b/pkgs/tools/networking/tinyssh/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "tinyssh"; - version = "20220305"; + version = "20220311"; src = fetchFromGitHub { owner = "janmojzis"; repo = "tinyssh"; rev = version; - sha256 = "sha256-d49saN0I22DZixx5AdvQmx3WM7yzQH5lOKnKbzhlls0="; + sha256 = "sha256-+lmPPc2UsNtOfuheWEZHAzmKBilNQ3kNh8ixzDnRjRc="; }; preConfigure = '' diff --git a/pkgs/tools/nix/nix-output-monitor/default.nix b/pkgs/tools/nix/nix-output-monitor/default.nix index 0f78600a050..a79b41a4a5d 100644 --- a/pkgs/tools/nix/nix-output-monitor/default.nix +++ b/pkgs/tools/nix/nix-output-monitor/default.nix @@ -1,164 +1,23 @@ -# This file has been autogenerate with cabal2nix. -# Update via ./update.sh" { - mkDerivation, - ansi-terminal, - async, - attoparsec, - base, - bytestring, - cassava, - containers, - data-default, - directory, + haskell, expect, - extra, - fetchzip, - filepath, - generic-optics, - HUnit, + haskellPackages, installShellFiles, - lib, - lock-file, - MemoTrie, - mtl, - nix-derivation, - optics, - process, - random, - relude, - runtimeShell, - safe, - stm, - streamly, - terminal-size, - text, - time, - unix, - vector, - wcwidth, - word8, -}: -mkDerivation { - pname = "nix-output-monitor"; - version = "1.1.2.0"; - src = fetchzip { - url = "https://github.com/maralorn/nix-output-monitor/archive/refs/tags/v1.1.2.0.tar.gz"; - sha256 = "03qhy4xzika41pxlmvpz3psgy54va72ipn9v1lv33l6369ikrhl1"; +}: let + inherit (haskell.lib.compose) justStaticExecutables overrideCabal; + overrides = { + passthru.updateScript = ./update.sh; + testTarget = "unit-tests"; + buildTools = [installShellFiles]; + postInstall = '' + substitute "exe-sh/nom-build" "$out/bin/nom-build" \ + --replace 'unbuffer' '${expect}/bin/unbuffer' \ + --replace 'nom' "$out/bin/nom" + chmod a+x $out/bin/nom-build + installShellCompletion --zsh --name _nom-build completions/completion.zsh + ''; }; - isLibrary = true; - isExecutable = true; - libraryHaskellDepends = [ - ansi-terminal - async - attoparsec - base - bytestring - cassava - containers - data-default - directory - extra - filepath - generic-optics - lock-file - MemoTrie - mtl - nix-derivation - optics - random - relude - safe - stm - streamly - terminal-size - text - time - unix - vector - wcwidth - word8 - ]; - executableHaskellDepends = [ - ansi-terminal - async - attoparsec - base - bytestring - cassava - containers - data-default - directory - extra - filepath - generic-optics - lock-file - MemoTrie - mtl - nix-derivation - optics - random - relude - safe - stm - streamly - terminal-size - text - time - unix - vector - wcwidth - word8 - ]; - testHaskellDepends = [ - ansi-terminal - async - attoparsec - base - bytestring - cassava - containers - data-default - directory - extra - filepath - generic-optics - HUnit - lock-file - MemoTrie - mtl - nix-derivation - optics - process - random - relude - safe - stm - streamly - terminal-size - text - time - unix - vector - wcwidth - word8 - ]; - homepage = "https://github.com/maralorn/nix-output-monitor"; - description = "Parses output of nix-build to show additional information"; - license = lib.licenses.agpl3Plus; - maintainers = with lib.maintainers; [maralorn]; - passthru.updateScript = ./update.sh; - testTarget = "unit-tests"; - buildTools = [installShellFiles]; - postInstall = '' - cat > $out/bin/nom-build << EOF - #!${runtimeShell} - ${expect}/bin/unbuffer nix-build "\$@" 2>&1 | exec $out/bin/nom - EOF - chmod a+x $out/bin/nom-build - installShellCompletion --zsh --name _nom-build ${builtins.toFile "completion.zsh" '' - #compdef nom-build - compdef nom-build=nix-build - ''} - ''; -} +in + justStaticExecutables + (overrideCabal overrides + (haskellPackages.callPackage ./generated-package.nix {})) diff --git a/pkgs/tools/nix/nix-output-monitor/generated-package.nix b/pkgs/tools/nix/nix-output-monitor/generated-package.nix new file mode 100644 index 00000000000..9f4d4b5042b --- /dev/null +++ b/pkgs/tools/nix/nix-output-monitor/generated-package.nix @@ -0,0 +1,147 @@ +# This file has been autogenerate with cabal2nix. +# Update via ./update.sh" +{ + mkDerivation, + ansi-terminal, + async, + attoparsec, + base, + bytestring, + cassava, + containers, + data-default, + directory, + extra, + fetchzip, + filepath, + generic-optics, + HUnit, + lib, + lock-file, + MemoTrie, + mtl, + nix-derivation, + optics, + process, + random, + relude, + safe, + stm, + streamly, + terminal-size, + text, + time, + unix, + vector, + wcwidth, + word8, +}: +mkDerivation { + pname = "nix-output-monitor"; + version = "1.1.2.1"; + src = fetchzip { + url = "https://github.com/maralorn/nix-output-monitor/archive/refs/tags/v1.1.2.1.tar.gz"; + sha256 = "00jn963jskyqnwvbvn5x0z92x2gv105p5h8m13nlmr90lj4axynx"; + }; + isLibrary = true; + isExecutable = true; + libraryHaskellDepends = [ + ansi-terminal + async + attoparsec + base + bytestring + cassava + containers + data-default + directory + extra + filepath + generic-optics + lock-file + MemoTrie + mtl + nix-derivation + optics + random + relude + safe + stm + streamly + terminal-size + text + time + unix + vector + wcwidth + word8 + ]; + executableHaskellDepends = [ + ansi-terminal + async + attoparsec + base + bytestring + cassava + containers + data-default + directory + extra + filepath + generic-optics + lock-file + MemoTrie + mtl + nix-derivation + optics + random + relude + safe + stm + streamly + terminal-size + text + time + unix + vector + wcwidth + word8 + ]; + testHaskellDepends = [ + ansi-terminal + async + attoparsec + base + bytestring + cassava + containers + data-default + directory + extra + filepath + generic-optics + HUnit + lock-file + MemoTrie + mtl + nix-derivation + optics + process + random + relude + safe + stm + streamly + terminal-size + text + time + unix + vector + wcwidth + word8 + ]; + homepage = "https://github.com/maralorn/nix-output-monitor"; + description = "Parses output of nix-build to show additional information"; + license = lib.licenses.agpl3Plus; + maintainers = with lib.maintainers; [maralorn]; +} diff --git a/pkgs/tools/nix/nix-output-monitor/update.sh b/pkgs/tools/nix/nix-output-monitor/update.sh index ad5da000030..b25a65fca2d 100755 --- a/pkgs/tools/nix/nix-output-monitor/update.sh +++ b/pkgs/tools/nix/nix-output-monitor/update.sh @@ -9,7 +9,7 @@ set -eo pipefail # This is the directory of this update.sh script. script_dir="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null 2>&1 && pwd )" -derivation_file="${script_dir}/default.nix" +derivation_file="${script_dir}/generated-package.nix" # This is the latest released version of nix-output-monitor on GitHub. new_version=$(curl --silent "https://api.github.com/repos/maralorn/nix-output-monitor/releases" | jq '.[0].tag_name' --raw-output) @@ -23,30 +23,9 @@ cat > "$derivation_file" << EOF EOF cabal2nix \ - --extra-arguments expect \ - --extra-arguments runtimeShell\ - --extra-arguments installShellFiles\ --maintainer maralorn \ "https://github.com/maralorn/nix-output-monitor/archive/refs/tags/${new_version}.tar.gz" \ - | head -n-1 >> "$derivation_file" - -cat >> "$derivation_file" << EOF - passthru.updateScript = ./update.sh; - testTarget = "unit-tests"; - buildTools = [ installShellFiles ]; - postInstall = '' - cat > \$out/bin/nom-build << EOF - #!\${runtimeShell} - \${expect}/bin/unbuffer nix-build "\\\$@" 2>&1 | exec \$out/bin/nom - EOF - chmod a+x \$out/bin/nom-build - installShellCompletion --zsh --name _nom-build \${builtins.toFile "completion.zsh" '' - #compdef nom-build - compdef nom-build=nix-build - ''} - ''; -} -EOF + >> "$derivation_file" alejandra "${derivation_file}" | cat diff --git a/pkgs/tools/package-management/cargo-about/default.nix b/pkgs/tools/package-management/cargo-about/default.nix index 17c9f690d0a..0ed6f978ba9 100644 --- a/pkgs/tools/package-management/cargo-about/default.nix +++ b/pkgs/tools/package-management/cargo-about/default.nix @@ -2,19 +2,19 @@ rustPlatform.buildRustPackage rec { pname = "cargo-about"; - version = "0.4.7"; + version = "0.5.0"; src = fetchFromGitHub { owner = "EmbarkStudios"; repo = "cargo-about"; rev = version; - sha256 = "sha256-KrUb71/wEQnAD2VVkufw12kXrz35sU5fNciSJsMyGrc="; + sha256 = "sha256-M09X7UwrTtrOhOphhpGHSAqxneY50jNrFKJCeBQhRfc="; }; # enable pkg-config feature of zstd cargoPatches = [ ./zstd-pkg-config.patch ]; - cargoSha256 = "sha256-JewI+23eNrMHfSUwsA3CaeTvG61/ZOFFLpm7rKZKsoU="; + cargoSha256 = "sha256-E1+OfVAzrezXoUz9Nlyhdq1xxEWm4UJhVyp+nG7UmYY="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/tools/package-management/cargo-outdated/default.nix b/pkgs/tools/package-management/cargo-outdated/default.nix index d15cbe8a9cc..a1f783a7fe4 100644 --- a/pkgs/tools/package-management/cargo-outdated/default.nix +++ b/pkgs/tools/package-management/cargo-outdated/default.nix @@ -11,14 +11,14 @@ rustPlatform.buildRustPackage rec { pname = "cargo-outdated"; - version = "0.10.2"; + version = "0.11.0"; src = fetchCrate { inherit pname version; - sha256 = "sha256-U6qElZkray4kjScv9X4I5m2z1ZWQzqcPYAuPzpyRpW0="; + sha256 = "sha256-43PqIM61MXY35BSprRNPTMyVUEVD15sq4+6PHS/P2o0="; }; - cargoSha256 = "sha256-0J02Uz184zx5xZYhqUmyaAFCQ0aogwy0fQTXbteBdV8="; + cargoSha256 = "sha256-ue93L8pyjKR+bxNdltQcsHSPJ3Iz+4gpeskIhhR2/wI="; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/tools/package-management/disnix/disnixos/default.nix b/pkgs/tools/package-management/disnix/disnixos/default.nix index 35541fa36ac..05a9e45c956 100644 --- a/pkgs/tools/package-management/disnix/disnixos/default.nix +++ b/pkgs/tools/package-management/disnix/disnixos/default.nix @@ -2,11 +2,11 @@ stdenv.mkDerivation rec { pname = "disnixos"; - version = "0.9.2"; + version = "0.9.3"; src = fetchurl { url = "https://github.com/svanderburg/disnixos/releases/download/${pname}-${version}/${pname}-${version}.tar.gz"; - sha256 = "0zcghb9nm911bfwpzcgj4ga2cndxbzp5pmrxff711qydrwgy7sg7"; + sha256 = "0nm7g184xh6xzjz4a40a7kgfnpmq043x6v0cynpffa6wd9jv89s9"; }; nativeBuildInputs = [ pkg-config ]; diff --git a/pkgs/tools/package-management/disnix/dysnomia/default.nix b/pkgs/tools/package-management/disnix/dysnomia/default.nix index 678f0a9be8b..f07aade89ca 100644 --- a/pkgs/tools/package-management/disnix/dysnomia/default.nix +++ b/pkgs/tools/package-management/disnix/dysnomia/default.nix @@ -1,7 +1,7 @@ { lib, stdenv, fetchurl, netcat # Optional packages -, systemd ? null, ejabberd ? null, mysql ? null, postgresql ? null, subversion ? null +, systemd ? null, ejabberd ? null, mariadb ? null, postgresql ? null, subversion ? null , mongodb ? null, mongodb-tools ? null, influxdb ? null, supervisor ? null, docker ? null , nginx ? null, s6-rc ? null, xinetd ? null @@ -26,7 +26,7 @@ , getopt }: -assert enableMySQLDatabase -> mysql != null; +assert enableMySQLDatabase -> mariadb != null; assert enablePostgreSQLDatabase -> postgresql != null; assert enableSubversionRepository -> subversion != null; assert enableEjabberdDump -> ejabberd != null; @@ -68,7 +68,7 @@ stdenv.mkDerivation rec { buildInputs = [ getopt netcat ] ++ lib.optional stdenv.isLinux systemd ++ lib.optional enableEjabberdDump ejabberd - ++ lib.optional enableMySQLDatabase mysql.out + ++ lib.optional enableMySQLDatabase mariadb.out ++ lib.optional enablePostgreSQLDatabase postgresql ++ lib.optional enableSubversionRepository subversion ++ lib.optionals enableMongoDatabase [ mongodb mongodb-tools ] diff --git a/pkgs/tools/package-management/nfpm/default.nix b/pkgs/tools/package-management/nfpm/default.nix index dc877ee2d81..8b03779ae7d 100644 --- a/pkgs/tools/package-management/nfpm/default.nix +++ b/pkgs/tools/package-management/nfpm/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "nfpm"; - version = "2.14.0"; + version = "2.15.0"; src = fetchFromGitHub { owner = "goreleaser"; repo = pname; rev = "v${version}"; - sha256 = "sha256-KZeamXMhTX8CbPR66f4ij29GsIvzSbDUZtla+EXPRG4="; + sha256 = "sha256-z9jGivdO7LduJuHbyKr4sl8xg+FGVvKwCm+RgVQPxJQ="; }; - vendorSha256 = "sha256-j4ebzVOzlmQwSkP8epDGClT7fhSUtC6uWdcoo+tFbnc="; + vendorSha256 = "sha256-guJgLjmB29sOLIzs2+gKNp0WTWC3zS9Sb5DD5IistKY="; doCheck = false; @@ -20,7 +20,7 @@ buildGoModule rec { meta = with lib; { description = "A simple deb and rpm packager written in Go"; homepage = "https://github.com/goreleaser/nfpm"; - maintainers = [ maintainers.marsam ]; - license = licenses.mit; + maintainers = with maintainers; [ marsam techknowlogick ]; + license = with licenses; [ mit ]; }; } diff --git a/pkgs/tools/security/amber/default.nix b/pkgs/tools/security/amber/default.nix index 5fb88ca9921..c2196cea686 100644 --- a/pkgs/tools/security/amber/default.nix +++ b/pkgs/tools/security/amber/default.nix @@ -3,16 +3,16 @@ rustPlatform.buildRustPackage rec { # Renaming it to amber-secret because another package named amber exists pname = "amber-secret"; - version = "0.1.2"; + version = "0.1.3"; src = fetchFromGitHub { owner = "fpco"; repo = "amber"; rev = "v${version}"; - sha256 = "sha256-+vipQl/HWoYnOPkQLjeIedpnnqPVYaUWhks9eCgMOxQ="; + sha256 = "sha256-kPDNTwsfI+8nOgsLv2aONrLGSRZhw5YzNntJ2tbE0oI="; }; - cargoSha256 = "sha256-xWEQvCyd8auE0q9rBt9iDgU8Dscf4pq/gsAINH2eQY4="; + cargoSha256 = "sha256-fTdTgbeOQXEpLHq9tHiPLkttvaxS/WJ86h3jRdrfbJM="; buildInputs = lib.optionals stdenv.isDarwin [ Security ]; diff --git a/pkgs/tools/security/cariddi/default.nix b/pkgs/tools/security/cariddi/default.nix index 9f29826808d..74e9b05b237 100644 --- a/pkgs/tools/security/cariddi/default.nix +++ b/pkgs/tools/security/cariddi/default.nix @@ -5,16 +5,16 @@ buildGoModule rec { pname = "cariddi"; - version = "1.1.5"; + version = "1.1.6"; src = fetchFromGitHub { owner = "edoardottt"; repo = pname; rev = "v${version}"; - sha256 = "sha256-PXQljC9rwlxXQ96fII3EjD4NXu61EMkYvMWqkcJZ4vU="; + sha256 = "sha256-/ez2biYU8NnVny8v5Mu9pLq0oqzcIenpyEb3qkPd9v8="; }; - vendorSha256 = "sha256-zNUdglsfy6lEV54afCAoigxa3rR0qf/e3+B4PvVRIa4="; + vendorSha256 = "sha256-zJ39tAq+ooROMHG1vC2m2rbq+wttxqYxAd2hLg5GtJM="; meta = with lib; { description = "Crawler for URLs and endpoints"; diff --git a/pkgs/tools/security/cfripper/default.nix b/pkgs/tools/security/cfripper/default.nix index 39b0187c4a6..4e5d2e7e030 100644 --- a/pkgs/tools/security/cfripper/default.nix +++ b/pkgs/tools/security/cfripper/default.nix @@ -5,13 +5,13 @@ python3.pkgs.buildPythonApplication rec { pname = "cfripper"; - version = "1.5.1"; + version = "1.6.0"; src = fetchFromGitHub { owner = "Skyscanner"; repo = pname; rev = version; - hash = "sha256-/qcpLCk1ZZMKxhqK6q6sSbRDjiF5GQmDJzvCaV2kAqQ="; + hash = "sha256-bomQqg+xzq7+iccE+x6mN265HxkYvy13aAwBBikth3U="; }; propagatedBuildInputs = with python3.pkgs; [ diff --git a/pkgs/tools/security/exploitdb/default.nix b/pkgs/tools/security/exploitdb/default.nix index a50588fc1f8..4338576c75e 100644 --- a/pkgs/tools/security/exploitdb/default.nix +++ b/pkgs/tools/security/exploitdb/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "exploitdb"; - version = "2022-03-11"; + version = "2022-03-15"; src = fetchFromGitHub { owner = "offensive-security"; repo = pname; rev = version; - sha256 = "sha256-dW4cLm//4wROsizRQ59sqEGPRZ26yIU5I7mdPEYC3YU="; + sha256 = "sha256-whV7zg7njGGjUpxsXZiNwVfHgrlop2RLZnCsBWQ+HkY="; }; diff --git a/pkgs/tools/security/feroxbuster/default.nix b/pkgs/tools/security/feroxbuster/default.nix new file mode 100644 index 00000000000..ecfc496ce8e --- /dev/null +++ b/pkgs/tools/security/feroxbuster/default.nix @@ -0,0 +1,45 @@ +{ lib +, stdenv +, fetchFromGitHub +, openssl +, pkg-config +, rustPlatform +, Security +}: + +rustPlatform.buildRustPackage rec { + pname = "feroxbuster"; + version = "2.6.1"; + + src = fetchFromGitHub { + owner = "epi052"; + repo = pname; + rev = "v${version}"; + hash = "sha256-RY9bFuALRaVXDrC0eIx0inPjRqNpRKNZf3mCrKIdGL8="; + }; + + cargoSha256 = "sha256-0Zawlx/lhF7K8nOsHYKO84pnctVMpm3RfnAFCOltOqE="; + + OPENSSL_NO_VENDOR = true; + + nativeBuildInputs = [ + pkg-config + ]; + + buildInputs = [ + openssl + ] ++ lib.optionals stdenv.isDarwin [ + Security + ]; + + # Tests require network access + doCheck = false; + + meta = with lib; { + description = "Fast, simple, recursive content discovery tool"; + homepage = "https://github.com/epi052/feroxbuster"; + license = with licenses; [ mit ]; + maintainers = with maintainers; [ fab ]; + }; +} + diff --git a/pkgs/tools/security/fulcio/default.nix b/pkgs/tools/security/fulcio/default.nix index 96ef86d18d1..300b996524d 100644 --- a/pkgs/tools/security/fulcio/default.nix +++ b/pkgs/tools/security/fulcio/default.nix @@ -2,33 +2,61 @@ buildGoModule rec { pname = "fulcio"; - version = "0.1.1"; + version = "0.2.0"; src = fetchFromGitHub { owner = "sigstore"; repo = pname; rev = "v${version}"; - sha256 = "sha256-MvLQMGPyJYqYUljLqsr+qJeeYnxdH9aNGkWpDRvOeh8="; + sha256 = "sha256-tCjFx9Ug8rO8cSxQb2vBG/MHSUJCx17lDeGnSGjZLcI="; + # populate values that require us to use git. By doing this in postFetch we + # can delete .git afterwards and maintain better reproducibility of the src. + leaveDotGit = true; + postFetch = '' + cd "$out" + git rev-parse HEAD > $out/COMMIT + # '0000-00-00T00:00:00Z' + date -u -d "@$(git log -1 --pretty=%ct)" "+'%Y-%m-%dT%H:%M:%SZ'" > $out/SOURCE_DATE_EPOCH + find "$out" -name .git -print0 | xargs -0 rm -rf + ''; }; - vendorSha256 = "sha256-pRL0et+UOi/tzuQz/Q7UmSA+pVhLJYR8lG8NAbPN9PU="; + vendorSha256 = "sha256-CmtsReP0JacgNyRqCrYZRONwR5eluymrQgsj/ukhYNQ="; - ldflags = [ "-s" "-w" ]; - - # Install completions post-install + # install completions post-install nativeBuildInputs = [ installShellFiles ]; + ldflags = [ + "-s" + "-w" + "-X github.com/sigstore/fulcio/cmd/app.gitVersion=v${version}" + "-X github.com/sigstore/fulcio/cmd/app.gitTreeState=clean" + ]; + + # ldflags based on metadata from git and source + preBuild = '' + ldflags+=" -X github.com/sigstore/fulcio/cmd/app.gitCommit=$(cat COMMIT)" + ldflags+=" -X github.com/sigstore/fulcio/cmd/app.buildDate=$(cat SOURCE_DATE_EPOCH)" + ''; + + preCheck = '' + # remove test that requires networking + rm pkg/config/config_test.go + ''; + postInstall = '' - mv $out/bin/fulcio $out/bin/fulcio-server - installShellCompletion --cmd fulcio-server \ - --bash <($out/bin/fulcio-server completion bash) \ - --fish <($out/bin/fulcio-server completion fish) \ - --zsh <($out/bin/fulcio-server completion zsh) + installShellCompletion --cmd fulcio \ + --bash <($out/bin/fulcio completion bash) \ + --fish <($out/bin/fulcio completion fish) \ + --zsh <($out/bin/fulcio completion zsh) ''; doInstallCheck = true; installCheckPhase = '' runHook preInstallCheck - $out/bin/fulcio-server --help + + $out/bin/fulcio --help + $out/bin/fulcio version | grep "v${version}" + runHook postInstallCheck ''; diff --git a/pkgs/tools/security/gnupg/23.nix b/pkgs/tools/security/gnupg/23.nix index ef7a5cf85e7..e80804cd002 100644 --- a/pkgs/tools/security/gnupg/23.nix +++ b/pkgs/tools/security/gnupg/23.nix @@ -15,11 +15,11 @@ assert guiSupport -> pinentry != null && enableMinimal == false; stdenv.mkDerivation rec { pname = "gnupg"; - version = "2.3.3"; + version = "2.3.4"; src = fetchurl { url = "mirror://gnupg/gnupg/${pname}-${version}.tar.bz2"; - sha256 = "0dz9x0r5021bhk1kjh29m1q13xbslwb8yn9qzcp7b9m1lrnvi2ap"; + sha256 = "sha256-80aOyvsdf5rXtR/R23rr8XzridLvqKBc8vObTUBUAq4="; }; depsBuildBuild = [ buildPackages.stdenv.cc ]; @@ -34,19 +34,9 @@ stdenv.mkDerivation rec { ./tests-add-test-cases-for-import-without-uid.patch ./allow-import-of-previously-known-keys-even-without-UI.patch ./accept-subkeys-with-a-good-revocation-but-no-self-sig.patch - ] ++ lib.optional stdenv.isDarwin [ - # Remove an innocent warning printed on systems without procfs - # https://dev.gnupg.org/T5656 - (fetchpatch { - url = "https://raw.githubusercontent.com/Homebrew/formula-patches/890be5f6af88e7913d177af87a50129049e681bb/gnupg/2.3.3-proc-error.patch"; - sha256 = "sha256-oiTa7Nf+AEmhZ683CJEaCb559PXJ6RpSSgRLpxz4CKU="; - }) ]; postPatch = '' - sed -i 's,hkps://hkps.pool.sks-keyservers.net,hkps://keys.openpgp.org,g' configure doc/dirmngr.texi doc/gnupg.info-1 - # Fix broken SOURCE_DATE_EPOCH usage - remove on the next upstream update - sed -i 's/$SOURCE_DATE_EPOCH/''${SOURCE_DATE_EPOCH}/' doc/Makefile.am - sed -i 's/$SOURCE_DATE_EPOCH/''${SOURCE_DATE_EPOCH}/' doc/Makefile.in + sed -i 's,\(hkps\|https\)://keyserver.ubuntu.com,hkps://keys.openpgp.org,g' configure configure.ac doc/dirmngr.texi doc/gnupg.info-1 '' + lib.optionalString (stdenv.isLinux && pcsclite != null) '' sed -i 's,"libpcsclite\.so[^"]*","${lib.getLib pcsclite}/lib/libpcsclite.so",g' scd/scdaemon.c ''; diff --git a/pkgs/tools/security/grype/default.nix b/pkgs/tools/security/grype/default.nix index cc35a24151a..1b80d7ecd88 100644 --- a/pkgs/tools/security/grype/default.nix +++ b/pkgs/tools/security/grype/default.nix @@ -6,28 +6,26 @@ buildGoModule rec { pname = "grype"; - version = "0.33.1"; + version = "0.34.3"; src = fetchFromGitHub { owner = "anchore"; repo = pname; rev = "v${version}"; - sha256 = "sha256-5QjyGIpxnrwTnEmi0D16vPKodg3+SKiINFONwU2OzC0="; + sha256 = "sha256-iWmLfQ08+dhjvKQiK2iy2Tegk4jH9dGopu/6kdDRZd0="; # populate values that require us to use git. By doing this in postFetch we # can delete .git afterwards and maintain better reproducibility of the src. leaveDotGit = true; postFetch = '' cd "$out" - commit="$(git rev-parse HEAD)" - source_date_epoch=$(git log --date=format:'%Y-%m-%dT%H:%M:%SZ' -1 --pretty=%ad) - substituteInPlace "$out/internal/version/build.go" \ - --replace 'gitCommit = valueNotProvided' "gitCommit = \"$commit\"" \ - --replace 'buildDate = valueNotProvided' "buildDate = \"$source_date_epoch\"" + git rev-parse HEAD > $out/COMMIT + # 0000-00-00T00:00:00Z + date -u -d "@$(git log -1 --pretty=%ct)" "+%Y-%m-%dT%H:%M:%SZ" > $out/SOURCE_DATE_EPOCH find "$out" -name .git -print0 | xargs -0 rm -rf ''; }; - vendorSha256 = "sha256-CPMfQv9oiLbIMkZe/t482LzssoNTcNVJdr2o2wJecSA="; + vendorSha256 = "sha256-WrUZFlN7dPbyN9InjX/Y9J+iYKu5v2/SHmRgDP5BJi8="; nativeBuildInputs = [ installShellFiles @@ -37,14 +35,17 @@ buildGoModule rec { "-s" "-w" "-X github.com/anchore/grype/internal/version.version=${version}" + "-X github.com/anchore/grype/internal/version.gitDescription=v${version}" "-X github.com/anchore/grype/internal/version.gitTreeState=clean" ]; preBuild = '' # grype version also displays the version of the syft library used # we need to grab it from the go.sum and add an ldflag for it - SYFTVERSION="$(grep "github.com/anchore/syft" go.sum -m 1 | awk '{print $2}')" - ldflags+=" -X github.com/anchore/grype/internal/version.syftVersion=$SYFTVERSION" + SYFT_VERSION="$(grep "github.com/anchore/syft" go.sum -m 1 | awk '{print $2}')" + ldflags+=" -X github.com/anchore/grype/internal/version.syftVersion=$SYFT_VERSION" + ldflags+=" -X github.com/anchore/grype/internal/version.gitCommit=$(cat COMMIT)" + ldflags+=" -X github.com/anchore/grype/internal/version.buildDate=$(cat SOURCE_DATE_EPOCH)" ''; # Tests require a running Docker instance diff --git a/pkgs/tools/security/libtpms/default.nix b/pkgs/tools/security/libtpms/default.nix index d93f0135c20..2042ec30fff 100644 --- a/pkgs/tools/security/libtpms/default.nix +++ b/pkgs/tools/security/libtpms/default.nix @@ -7,13 +7,13 @@ stdenv.mkDerivation rec { pname = "libtpms"; - version = "0.9.2"; + version = "0.9.3"; src = fetchFromGitHub { owner = "stefanberger"; repo = "libtpms"; rev = "v${version}"; - sha256 = "sha256-sfAmyx9MgzCVA1Da7hl6/sKxhS9ptaNLeSB8wmJIKDs="; + sha256 = "sha256-ih154MtLWBUdo7+ugu6tg5O/XSjlgFC00wgWC71VeaE="; }; nativeBuildInputs = [ diff --git a/pkgs/tools/security/metasploit/Gemfile b/pkgs/tools/security/metasploit/Gemfile index bdecd4e0a94..90c0d3987cd 100644 --- a/pkgs/tools/security/metasploit/Gemfile +++ b/pkgs/tools/security/metasploit/Gemfile @@ -1,4 +1,4 @@ # frozen_string_literal: true source "https://rubygems.org" -gem "metasploit-framework", git: "https://github.com/rapid7/metasploit-framework", ref: "refs/tags/6.1.32" +gem "metasploit-framework", git: "https://github.com/rapid7/metasploit-framework", ref: "refs/tags/6.1.34" diff --git a/pkgs/tools/security/metasploit/Gemfile.lock b/pkgs/tools/security/metasploit/Gemfile.lock index 6855f10bb48..080eefa6e2b 100644 --- a/pkgs/tools/security/metasploit/Gemfile.lock +++ b/pkgs/tools/security/metasploit/Gemfile.lock @@ -1,9 +1,9 @@ GIT remote: https://github.com/rapid7/metasploit-framework - revision: f7cd9896b753377c4c663188b6c26500b7850f41 - ref: refs/tags/6.1.32 + revision: e1ab1599c07319d2732645b003c038ffa4dad7cd + ref: refs/tags/6.1.34 specs: - metasploit-framework (6.1.32) + metasploit-framework (6.1.34) actionpack (~> 6.0) activerecord (~> 6.0) activesupport (~> 6.0) @@ -98,25 +98,25 @@ GEM remote: https://rubygems.org/ specs: Ascii85 (1.1.0) - actionpack (6.1.4.6) - actionview (= 6.1.4.6) - activesupport (= 6.1.4.6) + actionpack (6.1.5) + actionview (= 6.1.5) + activesupport (= 6.1.5) rack (~> 2.0, >= 2.0.9) rack-test (>= 0.6.3) rails-dom-testing (~> 2.0) rails-html-sanitizer (~> 1.0, >= 1.2.0) - actionview (6.1.4.6) - activesupport (= 6.1.4.6) + actionview (6.1.5) + activesupport (= 6.1.5) builder (~> 3.1) erubi (~> 1.4) rails-dom-testing (~> 2.0) rails-html-sanitizer (~> 1.1, >= 1.2.0) - activemodel (6.1.4.6) - activesupport (= 6.1.4.6) - activerecord (6.1.4.6) - activemodel (= 6.1.4.6) - activesupport (= 6.1.4.6) - activesupport (6.1.4.6) + activemodel (6.1.5) + activesupport (= 6.1.5) + activerecord (6.1.5) + activemodel (= 6.1.5) + activesupport (= 6.1.5) + activesupport (6.1.5) concurrent-ruby (~> 1.0, >= 1.0.2) i18n (>= 1.6, < 2) minitest (>= 5.1) @@ -128,13 +128,13 @@ GEM arel-helpers (2.14.0) activerecord (>= 3.1.0, < 8) aws-eventstream (1.2.0) - aws-partitions (1.563.0) - aws-sdk-core (3.128.0) + aws-partitions (1.568.0) + aws-sdk-core (3.130.0) aws-eventstream (~> 1, >= 1.0.2) aws-partitions (~> 1, >= 1.525.0) aws-sigv4 (~> 1.1) jmespath (~> 1.0) - aws-sdk-ec2 (1.302.0) + aws-sdk-ec2 (1.303.0) aws-sdk-core (~> 3, >= 3.127.0) aws-sigv4 (~> 1.1) aws-sdk-iam (1.68.0) @@ -149,7 +149,7 @@ GEM aws-sigv4 (~> 1.4) aws-sigv4 (1.4.0) aws-eventstream (~> 1, >= 1.0.2) - bcrypt (3.1.16) + bcrypt (3.1.17) bcrypt_pbkdf (1.1.0) bindata (2.4.10) bson (4.14.1) @@ -221,7 +221,7 @@ GEM io-console (0.5.11) irb (1.3.6) reline (>= 0.2.5) - jmespath (1.6.0) + jmespath (1.6.1) jsobfu (0.4.2) rkelly-remix json (2.6.1) @@ -229,7 +229,7 @@ GEM logging (2.3.0) little-plugger (~> 1.1) multi_json (~> 1.14) - loofah (2.14.0) + loofah (2.15.0) crass (~> 1.0.2) nokogiri (>= 1.5.9) metasm (1.0.5) @@ -298,7 +298,7 @@ GEM hashery (~> 2.0) ruby-rc4 ttfunk - pg (1.3.3) + pg (1.3.4) public_suffix (4.0.6) puma (5.6.2) nio4r (~> 2.0) @@ -313,11 +313,11 @@ GEM nokogiri (>= 1.6) rails-html-sanitizer (1.4.2) loofah (~> 2.3) - railties (6.1.4.6) - actionpack (= 6.1.4.6) - activesupport (= 6.1.4.6) + railties (6.1.5) + actionpack (= 6.1.5) + activesupport (= 6.1.5) method_source - rake (>= 0.13) + rake (>= 12.2) thor (~> 1.0) rake (13.0.6) rb-readline (0.5.5) @@ -339,7 +339,7 @@ GEM metasm rex-arch rex-text - rex-exploitation (0.1.28) + rex-exploitation (0.1.29) jsobfu metasm rex-arch @@ -347,7 +347,7 @@ GEM rex-text rexml rex-java (0.1.6) - rex-mime (0.1.6) + rex-mime (0.1.7) rex-text rex-nop (0.1.2) rex-arch @@ -409,11 +409,11 @@ GEM ttfunk (1.7.0) tzinfo (2.0.4) concurrent-ruby (~> 1.0) - tzinfo-data (1.2021.5) + tzinfo-data (1.2022.1) tzinfo (>= 1.0.0) unf (0.1.4) unf_ext - unf_ext (0.0.8) + unf_ext (0.0.8.1) unix-crypt (1.3.0) warden (1.2.9) rack (>= 2.0.9) diff --git a/pkgs/tools/security/metasploit/default.nix b/pkgs/tools/security/metasploit/default.nix index 11215cd3dde..99d801482af 100644 --- a/pkgs/tools/security/metasploit/default.nix +++ b/pkgs/tools/security/metasploit/default.nix @@ -15,13 +15,13 @@ let }; in stdenv.mkDerivation rec { pname = "metasploit-framework"; - version = "6.1.32"; + version = "6.1.34"; src = fetchFromGitHub { owner = "rapid7"; repo = "metasploit-framework"; rev = version; - sha256 = "sha256-UoH+tp3I9YTXXNXDaYne1E9Zpoj9fbr7mnIQws6TXJs="; + sha256 = "sha256-6rGELJYmddWoR6qIuXKoCT5RpMASIzssWG9Y0Xtx+Z8="; }; nativeBuildInputs = [ makeWrapper ]; diff --git a/pkgs/tools/security/metasploit/gemset.nix b/pkgs/tools/security/metasploit/gemset.nix index 0104412d350..0d0271cca4b 100644 --- a/pkgs/tools/security/metasploit/gemset.nix +++ b/pkgs/tools/security/metasploit/gemset.nix @@ -4,50 +4,50 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1d4nxv0p3wv4w0pf89nmxzg10balny5rwbchwsscgiminzh3mg7y"; + sha256 = "0kk8c6n94lg5gyarsy33wakw04zbmdwgfr7zxv4zzmbnp1yach0w"; type = "gem"; }; - version = "6.1.4.6"; + version = "6.1.5"; }; actionview = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0cmxc80gg7pm6d9y7ah5qr4ymzks8rp51jv0a2qdq2m9p6llzlkk"; + sha256 = "16w7pl8ir253g1dzlzx4mwrjsx3v7fl7zn941xz53zb4ld286mhi"; type = "gem"; }; - version = "6.1.4.6"; + version = "6.1.5"; }; activemodel = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0izra8g3g1agv3mz72b0474adkj4ldszj3nwk3l0szgrln7df0lv"; + sha256 = "16anyz7wqwmphzb6w1sgmvdvj50g3zp70s94s5v8hwxj680f6195"; type = "gem"; }; - version = "6.1.4.6"; + version = "6.1.5"; }; activerecord = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "15v0dwp2122yzwlw8ca0lgx5qbw8fsasbn8zzcks1mvmc9afisss"; + sha256 = "0jl6jc9g9jxsljfnnmbkxrgwrz86icw6g745cv6iavryizrmw939"; type = "gem"; }; - version = "6.1.4.6"; + version = "6.1.5"; }; activesupport = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0vrz4vgqz4grr2ykwkd8zhhd0rg12z89n89zl6aff17zrdhhad35"; + sha256 = "0jmqndx3a46hpwz33ximqch27018n3mk9z19azgpylm33w7xpkx4"; type = "gem"; }; - version = "6.1.4.6"; + version = "6.1.5"; }; addressable = { groups = ["default"]; @@ -104,30 +104,30 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0l4f97kmsz1niicj52bm88ggbq3lvn41w0cckfwksh4yikjh20wv"; + sha256 = "1ap27g6hxcczpb5dj7v0wzxrvywfa2kf3zx69xnjz1qvxf3plw54"; type = "gem"; }; - version = "1.563.0"; + version = "1.568.0"; }; aws-sdk-core = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0xpqx000gq1j0n211c9bch5b2rc48a54kxk87m6y8z844c0wlqk7"; + sha256 = "14ymvp06k46gvkpvz5zaqvbvr6wd8vdka5iq25q0wd0fzdx7aivm"; type = "gem"; }; - version = "3.128.0"; + version = "3.130.0"; }; aws-sdk-ec2 = { groups = ["default"]; platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "13x9rwkykyw873prd2k9pqwrjkf9jsqih9aksbf9fn8hfnsv6db8"; + sha256 = "12k3gjsagdb11crg2gx7373qn1zhglkkija9d6558v0slcza8m3j"; type = "gem"; }; - version = "1.302.0"; + version = "1.303.0"; }; aws-sdk-iam = { groups = ["default"]; @@ -174,10 +174,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "02r1c3isfchs5fxivbq99gc3aq4vfyn8snhcy707dal1p8qz12qb"; + sha256 = "1rakdhrnlclrpy7sihi9ipwdh7fjkkvzga171464lq6rzp07cf65"; type = "gem"; }; - version = "3.1.16"; + version = "3.1.17"; }; bcrypt_pbkdf = { groups = ["default"]; @@ -594,10 +594,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1gjrr5pdcl3l3skhp9d0jzs4yhmknpv3ldcz59b339b9lqbqasnr"; + sha256 = "1mnvb80cdg7fzdcs3xscv21p28w4igk5sj5m7m81xp8v2ks87jj0"; type = "gem"; }; - version = "1.6.0"; + version = "1.6.1"; }; jsobfu = { groups = ["default"]; @@ -644,10 +644,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0z8bdcmw66j3dy6ivcc02yq32lx3n9bavx497llln8qy014xjm4w"; + sha256 = "1yp1h1j7pdkqvnx8jl6bkzlajav3h5mhqzihgs9p6y3c8927mw23"; type = "gem"; }; - version = "2.14.0"; + version = "2.15.0"; }; metasm = { groups = ["default"]; @@ -684,12 +684,12 @@ platforms = []; source = { fetchSubmodules = false; - rev = "f7cd9896b753377c4c663188b6c26500b7850f41"; - sha256 = "16swjg7c443jkbxvlzgxi2k5jkylvs4nkhymbkbq9xf8knvgx0aj"; + rev = "e1ab1599c07319d2732645b003c038ffa4dad7cd"; + sha256 = "17zrf5xx2n3gb0n3n8qjq2j52gh9m1rbk25a8yldax96jqn89cga"; type = "git"; url = "https://github.com/rapid7/metasploit-framework"; }; - version = "6.1.32"; + version = "6.1.34"; }; metasploit-model = { groups = ["default"]; @@ -977,10 +977,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0qqky1q9xhji017q1apx9w81qdlwpm6ix3amhikjy416hxxmhcj1"; + sha256 = "090c3kazlmiizp25las7dgi8wlc11s29nrs2gy3qrp1z8qikgcmb"; type = "gem"; }; - version = "1.3.3"; + version = "1.3.4"; }; public_suffix = { groups = ["default"]; @@ -1067,10 +1067,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "1snhwpbnmsyhr297qmin8i5i631aimjca1hiazi128i1355255hb"; + sha256 = "1fdqhv8qhk2dspkrr9f5dj3806g52cb0l1chh2hx8v81y218cl93"; type = "gem"; }; - version = "6.1.4.6"; + version = "6.1.5"; }; rake = { groups = ["default"]; @@ -1167,10 +1167,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "08v5nam0xp6f8qi3nyqzh97sz07hy59w82y213jz919mrgpb70vc"; + sha256 = "0asx13g0xqb8wnslrmsld2l1w2qpl6kjrcbfl945kw1nm7k5bwxb"; type = "gem"; }; - version = "0.1.28"; + version = "0.1.29"; }; rex-java = { groups = ["default"]; @@ -1187,10 +1187,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0wzw1qcdgbn3iyskppy5038mcdrzplyai45pilm5qjj4fwvjdl6m"; + sha256 = "00qpd5i8naw601q6aij652gw8x6my5d5drf63lq9fridjrqj0nja"; type = "gem"; }; - version = "0.1.6"; + version = "0.1.7"; }; rex-nop = { groups = ["default"]; @@ -1497,10 +1497,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0w1iyvw0m2xvdr4654jnn1g27jwj84y94dvaj1k2p3lcrvndm698"; + sha256 = "0yvfyxz70r45j65763fzy0p5j8cxlhnpn1n5lcxj4is7hp8v5i23"; type = "gem"; }; - version = "1.2021.5"; + version = "1.2022.1"; }; unf = { groups = ["default"]; @@ -1517,10 +1517,10 @@ platforms = []; source = { remotes = ["https://rubygems.org"]; - sha256 = "0jmbimpnpjdzz8hlrppgl9spm99qh3qzbx0b81k3gkgwba8nk3yd"; + sha256 = "0bf120xbq23zjyf8zi8h1576d71g58srr8rndig0whn10w72vrxz"; type = "gem"; }; - version = "0.0.8"; + version = "0.0.8.1"; }; unix-crypt = { groups = ["default"]; diff --git a/pkgs/tools/security/sequoia/default.nix b/pkgs/tools/security/sequoia/default.nix index 324af6aa4c9..4803430018e 100644 --- a/pkgs/tools/security/sequoia/default.nix +++ b/pkgs/tools/security/sequoia/default.nix @@ -5,7 +5,7 @@ , git , nettle # Use the same llvmPackages version as Rust -, llvmPackages_10 +, llvmPackages_12 , cargo , rustc , rustPlatform @@ -41,8 +41,8 @@ rustPlatform.buildRustPackage rec { cargo rustc git - llvmPackages_10.libclang.lib - llvmPackages_10.clang + llvmPackages_12.libclang.lib + llvmPackages_12.clang ensureNewerSourcesForZipFilesHook capnproto ] ++ @@ -72,7 +72,7 @@ rustPlatform.buildRustPackage rec { "build-release" ]; - LIBCLANG_PATH = "${llvmPackages_10.libclang.lib}/lib"; + LIBCLANG_PATH = "${llvmPackages_12.libclang.lib}/lib"; # Sometimes, tests fail on CI (ofborg) & hydra without this CARGO_TEST_ARGS = "--workspace --exclude sequoia-store"; diff --git a/pkgs/tools/security/sigma-cli/default.nix b/pkgs/tools/security/sigma-cli/default.nix index 3bf4e788912..5a6a3ab9ef5 100644 --- a/pkgs/tools/security/sigma-cli/default.nix +++ b/pkgs/tools/security/sigma-cli/default.nix @@ -5,14 +5,14 @@ python3.pkgs.buildPythonApplication rec { pname = "sigma-cli"; - version = "0.3.0"; + version = "0.3.2"; format = "pyproject"; src = fetchFromGitHub { owner = "SigmaHQ"; repo = pname; rev = "v${version}"; - hash = "sha256-Nfd78Y35naDTzwodcdvJr/02CptcHxS717VGsR/QOuI="; + hash = "sha256-We6vJXLIxGe//78pgJFrihFJHl0gRd02I53hoYWcao0="; }; nativeBuildInputs = with python3.pkgs; [ diff --git a/pkgs/tools/security/spire/default.nix b/pkgs/tools/security/spire/default.nix index 5f06abeda1b..9b9e9e93488 100644 --- a/pkgs/tools/security/spire/default.nix +++ b/pkgs/tools/security/spire/default.nix @@ -2,7 +2,7 @@ buildGoModule rec { pname = "spire"; - version = "1.2.0"; + version = "1.2.1"; outputs = [ "out" "agent" "server" ]; @@ -10,10 +10,10 @@ buildGoModule rec { owner = "spiffe"; repo = pname; rev = "v${version}"; - sha256 = "01ph9jzh18bnidrsbnnxm3gxh0cgfllnjvf7a5haqz51lm6a9pny"; + sha256 = "sha256-LK73RGSTwGhCXOglsqK8RAAldovRzliE78vi2ilTSrw="; }; - vendorSha256 = "1fd1k5by4wcjmzfgi3gnrwnb38b0wa3w67kzjlx8s0nwapyfgx0b"; + vendorSha256 = "sha256-am8ZTUX8Vph1Eg013NObMiSVeupS2hlHdpZ/1mO27dY="; subPackages = [ "cmd/spire-agent" "cmd/spire-server" ]; @@ -30,6 +30,7 @@ buildGoModule rec { meta = with lib; { description = "The SPIFFE Runtime Environment"; homepage = "https://github.com/spiffe/spire"; + changelog = "https://github.com/spiffe/spire/releases/tag/v${version}"; license = licenses.asl20; maintainers = with maintainers; [ jonringer fkautz ]; }; diff --git a/pkgs/tools/security/step-ca/default.nix b/pkgs/tools/security/step-ca/default.nix index 97a42646312..b650b93f411 100644 --- a/pkgs/tools/security/step-ca/default.nix +++ b/pkgs/tools/security/step-ca/default.nix @@ -12,16 +12,16 @@ buildGoModule rec { pname = "step-ca"; - version = "0.18.1"; + version = "0.18.2"; src = fetchFromGitHub { owner = "smallstep"; repo = "certificates"; rev = "v${version}"; - sha256 = "sha256-oebmJ+xrJTV5gXH3U1lWCSQMHiVnUTa0ZTp39sVB7KM="; + sha256 = "sha256-BhPup3q2muYGWzAa/9b4vnIjBces4GhUHZ/mg4CWMRc="; }; - vendorSha256 = "sha256-IJXJS+Z93Hw1I1CAeRv4mq8as9DKebqNFa0IMgZ+Kic="; + vendorSha256 = "sha256-oVaziWZGslZCVqkEXL32XvOVU54VOf41Qg+VoVWo7x0="; ldflags = [ "-buildid=" ]; diff --git a/pkgs/tools/security/volatility3/default.nix b/pkgs/tools/security/volatility3/default.nix index 393ac90d316..e019d96129f 100644 --- a/pkgs/tools/security/volatility3/default.nix +++ b/pkgs/tools/security/volatility3/default.nix @@ -5,15 +5,13 @@ python3.pkgs.buildPythonApplication rec { pname = "volatility3"; - version = "2.0.0"; - - disabled = python3.pythonOlder "3.6"; + version = "2.0.1"; src = fetchFromGitHub { owner = "volatilityfoundation"; repo = pname; rev = "v${version}"; - sha256 = "141n09cdc17pfdhs01aw8l4cvsqpcz8ji5l4gi7r88cyf4ix2lnz"; + hash = "sha256-rEqp+V5r4Sk4D+r2ukR1uy4IDj9XQGhYwoYSPeMyKpA="; }; propagatedBuildInputs = with python3.pkgs; [ @@ -31,7 +29,9 @@ python3.pkgs.buildPythonApplication rec { # Project has no tests doCheck = false; - pythonImportsCheck = [ "volatility3" ]; + pythonImportsCheck = [ + "volatility3" + ]; meta = with lib; { description = "Volatile memory extraction frameworks"; diff --git a/pkgs/tools/security/zdns/default.nix b/pkgs/tools/security/zdns/default.nix index 913735d4cb9..354dd5b6447 100644 --- a/pkgs/tools/security/zdns/default.nix +++ b/pkgs/tools/security/zdns/default.nix @@ -5,19 +5,16 @@ buildGoModule rec { pname = "zdns"; - version = "20210327-${lib.strings.substring 0 7 rev}"; - rev = "8c53210f0b9a4fe16c70a5d854e9413c3d0c1ba2"; + version = "2022-03-14-unstable"; src = fetchFromGitHub { owner = "zmap"; repo = pname; - inherit rev; - sha256 = "0pdfz1489ynpw72flalnlkwybp683v826icjx7ljys45xvagdvck"; + rev = "d659a361f6d5165462c10e1c1243f420175e066b"; + hash = "sha256-856O6H03me3IM39/+6n56KJIetL+v4on6+lJx5D2Pcw="; }; - vendorSha256 = "0b8h5n01xmhar1a09svb35ah48k9zdy1mn5balq0h2l0jxr05z78"; - - subPackages = [ "zdns" ]; + vendorSha256 = "sha256-5kZ0voyicnqK/0yrMYW+gR1vVDyptW6I1HgyG4zleX8="; meta = with lib; { description = "CLI DNS lookup tool"; diff --git a/pkgs/tools/system/goreman/default.nix b/pkgs/tools/system/goreman/default.nix index 9613ab8d650..8257e930779 100644 --- a/pkgs/tools/system/goreman/default.nix +++ b/pkgs/tools/system/goreman/default.nix @@ -2,14 +2,14 @@ buildGoModule rec { pname = "goreman"; - version = "0.3.9"; - rev = "df1209e7cdbad10aecc0aa75d332bc32822925f5"; + version = "0.3.11"; + rev = "6006c6e410ec5a5ba22b50e96227754a42f2834d"; src = fetchFromGitHub { owner = "mattn"; repo = "goreman"; rev = "v${version}"; - sha256 = "1irjf5i5ybdchyn42bamfq8pj3w00p633h1gg202n0vsr39h0bxw"; + sha256 = "sha256-TbJfeU94wakI2028kDqU+7dRRmqXuqpPeL4XBaA/HPo="; }; ldflags = [ @@ -18,7 +18,7 @@ buildGoModule rec { "-X main.revision=${builtins.substring 0 7 rev}" ]; - vendorSha256 = "sha256-+RFh6Ppxxs7P7DWqOBeEJTvPsBgOfopMjx22hPEI1/U="; + vendorSha256 = "sha256-87aHBRWm5Odv6LeshZty5N31sC+vdSwGlTYhk3BZkPo="; doCheck = false; diff --git a/pkgs/tools/system/hostctl/default.nix b/pkgs/tools/system/hostctl/default.nix index fb3a293a80f..bf3a2511858 100644 --- a/pkgs/tools/system/hostctl/default.nix +++ b/pkgs/tools/system/hostctl/default.nix @@ -1,21 +1,32 @@ -{ buildGoModule, fetchFromGitHub, lib, installShellFiles }: +{ lib +, buildGoModule +, fetchFromGitHub +, installShellFiles +}: buildGoModule rec { pname = "hostctl"; - version = "1.1.1"; + version = "1.1.2"; src = fetchFromGitHub { owner = "guumaster"; repo = pname; rev = "v${version}"; - sha256 = "sha256-VjFjGvIoymGVVRiZUk/qoq/PTYoklp+Jz89zndX0e5A="; + hash = "sha256-rvUm31WRSLusM9VGsIHKGTH6Vs8LWPtzPDs3azA710w="; }; vendorSha256 = "sha256-rGDWrivIdl5FTu/kNR8nAfE2+1hE4cm3uDg7oBobE9M="; - ldflags = [ "-s" "-w" "-X github.com/guumaster/hostctl/cmd/hostctl/actions.version=${version}" ]; + nativeBuildInputs = [ + installShellFiles + ]; + + ldflags = [ + "-s" + "-w" + "-X github.com/guumaster/hostctl/cmd/hostctl/actions.version=${version}" + ]; - nativeBuildInputs = [ installShellFiles ]; postInstall = '' installShellCompletion --cmd hostctl \ --bash <($out/bin/hostctl completion bash) \ @@ -23,7 +34,7 @@ buildGoModule rec { ''; meta = with lib; { - description = "Your dev tool to manage /etc/hosts like a pro!"; + description = "CLI tool to manage the /etc/hosts file"; longDescription = '' This tool gives you more control over the use of your hosts file. You can have multiple profiles and switch them on/off as you need. diff --git a/pkgs/tools/system/syslog-ng/default.nix b/pkgs/tools/system/syslog-ng/default.nix index 5d7fd2b1b6d..6948728f16b 100644 --- a/pkgs/tools/system/syslog-ng/default.nix +++ b/pkgs/tools/system/syslog-ng/default.nix @@ -7,11 +7,11 @@ stdenv.mkDerivation rec { pname = "syslog-ng"; - version = "3.35.1"; + version = "3.36.1"; src = fetchurl { url = "https://github.com/${pname}/${pname}/releases/download/${pname}-${version}/${pname}-${version}.tar.gz"; - sha256 = "sha256-HQI4sGs+WYfIWeW1Kezuc491us/wSxSTmLH+jLsSHlM="; + sha256 = "sha256-kKJcl2f+dJ21DxGN38kuxxOZdj0uzVrU8R/17qBJ5gs="; }; nativeBuildInputs = [ pkg-config which ]; diff --git a/pkgs/tools/text/difftastic/default.nix b/pkgs/tools/text/difftastic/default.nix index 729a0900f85..14c95bd2f3b 100644 --- a/pkgs/tools/text/difftastic/default.nix +++ b/pkgs/tools/text/difftastic/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "difftastic"; - version = "0.19.0"; + version = "0.22.0"; src = fetchFromGitHub { owner = "wilfred"; repo = pname; rev = version; - sha256 = "sha256-pZyQnPIdyS8XkzP9KwGKRjF21YWGgCVNeQSie9g5NcE="; + sha256 = "sha256-VV4nCR+BGly+EdCkyI4KeS0Zmn6NkfRsMs//0Sj3E20="; }; - cargoSha256 = "sha256-VXbCrhoGF6bCzQ02Y1LQkbEVrmIfDIKFWF9vx43tt94="; + cargoSha256 = "sha256-MyCi5PuUs9MJArDFaBgjjBInYJAS/SAPe1iNTs9feLY="; meta = with lib; { description = "A syntax-aware diff"; diff --git a/pkgs/tools/text/snippetpixie/default.nix b/pkgs/tools/text/snippetpixie/default.nix index 7102977e8ee..a83135b5024 100644 --- a/pkgs/tools/text/snippetpixie/default.nix +++ b/pkgs/tools/text/snippetpixie/default.nix @@ -56,8 +56,6 @@ stdenv.mkDerivation rec { json-glib xorg.libXtst pantheon.granite - pantheon.elementary-gtk-theme - pantheon.elementary-icon-theme ]; doCheck = true; diff --git a/pkgs/tools/text/tab/default.nix b/pkgs/tools/text/tab/default.nix index 096e0b04c69..18d3e3d004a 100644 --- a/pkgs/tools/text/tab/default.nix +++ b/pkgs/tools/text/tab/default.nix @@ -1,14 +1,14 @@ -{ lib, stdenv, fetchFromBitbucket, python3 }: +{ lib, stdenv, fetchFromGitHub, python3 }: stdenv.mkDerivation rec { - version = "8.0"; + version = "9.0"; pname = "tab"; - src = fetchFromBitbucket { - owner = "tkatchev"; + src = fetchFromGitHub { + owner = "ivan-tkatchev"; repo = pname; rev = version; - sha256 = "sha256-RcDvghTiqIdH79khwDIo8PhvmcObmix8WBrHToLwcw4="; + sha256 = "sha256-2keVGPRYV2KCeJ+LgAcl74cjW5wvp6Rmy7VNMtdliBE="; }; checkInputs = [ python3 ]; diff --git a/pkgs/tools/text/vale/default.nix b/pkgs/tools/text/vale/default.nix index 91ac9ae2e12..9ecd7f44cfa 100644 --- a/pkgs/tools/text/vale/default.nix +++ b/pkgs/tools/text/vale/default.nix @@ -2,7 +2,7 @@ buildGoModule rec { pname = "vale"; - version = "2.15.2"; + version = "2.15.3"; subPackages = [ "cmd/vale" ]; outputs = [ "out" "data" ]; @@ -11,10 +11,10 @@ buildGoModule rec { owner = "errata-ai"; repo = "vale"; rev = "v${version}"; - sha256 = "sha256-4KP4/mfuHTYxOwWqHOa2RNHgElOg6YNAEFmiuF/sHa8="; + sha256 = "sha256-vhsn72xCe1wC4YRdo2m49iUj/3nVl0cyfeSmWRfESaY="; }; - vendorSha256 = "sha256-2vYe943HHybOLcP8nDJe7RimMRIJdND2UPwtwB2mttE="; + vendorSha256 = "sha256-/0H35PGFFPch4jDnQ/ggctyHZJ5W/C1PNlkT5zzvI3M="; postInstall = '' mkdir -p $data/share/vale diff --git a/pkgs/tools/virtualization/awsebcli/default.nix b/pkgs/tools/virtualization/awsebcli/default.nix index 734ba58e693..8230768e997 100644 --- a/pkgs/tools/virtualization/awsebcli/default.nix +++ b/pkgs/tools/virtualization/awsebcli/default.nix @@ -29,6 +29,7 @@ let requests = changeVersionHash super.requests.overridePythonAttrs "2.26.0" "sha256-uKpY+M95P/2HgtPYyxnmbvNverpDU+7IWedGeLAbB6c="; six = changeVersion super.six.overridePythonAttrs "1.14.0" "02lw67hprv57hyg3cfy02y3ixjk3nzwc0dx3c4ynlvkfwkfdnsr3"; wcwidth = changeVersion super.wcwidth.overridePythonAttrs "0.1.9" "1wf5ycjx8s066rdvr0fgz4xds9a8zhs91c4jzxvvymm1c8l8cwzf"; + semantic-version = changeVersion super.semantic-version.overridePythonAttrs "2.8.5" "d2cb2de0558762934679b9a104e82eca7af448c9f4974d1f3eeccff651df8a54"; pyyaml = super.pyyaml.overridePythonAttrs (oldAttrs: rec { version = "5.4.1"; checkPhase = '' diff --git a/pkgs/tools/virtualization/shipyard/default.nix b/pkgs/tools/virtualization/shipyard/default.nix index dfdde2ead96..ee329828dc3 100644 --- a/pkgs/tools/virtualization/shipyard/default.nix +++ b/pkgs/tools/virtualization/shipyard/default.nix @@ -2,13 +2,13 @@ buildGoModule rec { pname = "shipyard"; - version = "0.3.47"; + version = "0.3.48"; src = fetchFromGitHub { rev = "v${version}"; owner = "shipyard-run"; repo = pname; - sha256 = "sha256-hzycO6yAwOoanoxxaGW0EwFiclu0WMkepzUAa6Zf8fg="; + sha256 = "sha256-Hbvp8MV5usg0R+QXM7Laq9I6XeZnvuVCjj/aHmnskiE="; }; vendorSha256 = "sha256-mXYnmDppVqhjlkGVkvp1YaEwBEkHBUddxLof389huMQ="; diff --git a/pkgs/tools/wayland/cliphist/default.nix b/pkgs/tools/wayland/cliphist/default.nix index 9ccad4397dd..473c6fabc5a 100644 --- a/pkgs/tools/wayland/cliphist/default.nix +++ b/pkgs/tools/wayland/cliphist/default.nix @@ -2,16 +2,16 @@ buildGoModule rec { pname = "cliphist"; - version = "0.3.0"; + version = "0.3.1"; src = fetchFromGitHub { owner = "sentriz"; repo = pname; rev = "v${version}"; - sha256 = "sha256-fx33m7DCp5N9VGI/H/IO66ECdFLobRRAAuRGNu4gzSk="; + sha256 = "sha256-kmXR8xzjAphgaC2Yd55VwZIJ4ehxP1LEA24hgyAbM7A="; }; - vendorSha256 = "sha256-UrKSDvskGwHjwkb/fjvaJZ8xXFD98BFeSJxwJpc8A+M="; + vendorSha256 = "sha256-LZnefa0FjYG39YJrSN9ef6OnXHXgSrlSL4LvRqLxFx4="; meta = with lib; { description = "Wayland clipboard manager"; diff --git a/pkgs/tools/wayland/swaykbdd/default.nix b/pkgs/tools/wayland/swaykbdd/default.nix index 4584018596d..e4f480dba8e 100644 --- a/pkgs/tools/wayland/swaykbdd/default.nix +++ b/pkgs/tools/wayland/swaykbdd/default.nix @@ -2,13 +2,13 @@ stdenv.mkDerivation rec { pname = "swaykbdd"; - version = "1.0"; + version = "1.1"; src = fetchFromGitHub { owner = "artemsen"; repo = "swaykbdd"; rev = "v${version}"; - sha256 = "101mbf7pvm4ykmkh29g5xswrzdhdwq0rslzxqqfd5ksf1fphzgxd"; + sha256 = "sha256-umYPVkkYeu6TyVkjDsVBsRZLYh8WyseCPdih85kTz6A="; }; nativeBuildInputs = [ meson ninja pkg-config ]; diff --git a/pkgs/tools/wayland/swayr/default.nix b/pkgs/tools/wayland/swayr/default.nix index c1bcf3b4e9f..6237d1a88ee 100644 --- a/pkgs/tools/wayland/swayr/default.nix +++ b/pkgs/tools/wayland/swayr/default.nix @@ -2,16 +2,16 @@ rustPlatform.buildRustPackage rec { pname = "swayr"; - version = "0.13.0"; + version = "0.15.0"; src = fetchFromSourcehut { owner = "~tsdh"; repo = "swayr"; rev = "v${version}"; - sha256 = "sha256-V4ETsraJo9X10fPMGSuiokPiSlZGYHncOdfheGom1go="; + sha256 = "sha256-GLOJjGr29v4oVNCWgjPWluIiSeLoIYeOw2HwmSfxA8Y="; }; - cargoSha256 = "sha256-3ErzkS8u+4Ve26jpDbsYr4BVDm/XEgydYdZ2ErtVuVA="; + cargoSha256 = "sha256-gg/IHrgfDZT+3FNM/se5X1YMcHX127jMNI/WDEpMzy4="; patches = [ ./icon-paths.patch diff --git a/pkgs/tools/wayland/ydotool/default.nix b/pkgs/tools/wayland/ydotool/default.nix index 4a75eac8c57..8d55233638e 100644 --- a/pkgs/tools/wayland/ydotool/default.nix +++ b/pkgs/tools/wayland/ydotool/default.nix @@ -1,41 +1,26 @@ -{ lib, stdenv, fetchFromGitHub, pkg-config, cmake, boost, libevdevplus, libuinputplus, iodash, cxxopts}: +{ lib, stdenv, fetchFromGitHub, pkg-config, cmake, scdoc }: stdenv.mkDerivation rec { pname = "ydotool"; - version = "unstable-2021-01-20"; + version = "1.0.1"; src = fetchFromGitHub { owner = "ReimuNotMoe"; repo = "ydotool"; - rev = "b1d041f52f7bac364d6539b1251d29c3b77c0f37"; - sha256 = "1gzdbx6fv0dbcyia3yyzhv93az2gf90aszb9kcj5cnxywfpv9w9g"; + rev = "v${version}"; + sha256 = "sha256-maXXGCqB8dkGO8956hsKSwM4HQdYn6z1jBFENQ9sKcA="; }; - # upstream decided to use a cpp package manager called cpm. - # we need to disable that because it wants networking, furthermore, - # it does some system folder creating which also needs to be disabled. - # Both changes are to respect the sandbox. - patches = [ ./fixup-cmakelists.patch ]; - - - # cxxopts is a header only library. - # See pull request: https://github.com/ReimuNotMoe/ydotool/pull/105 - postPatch = '' - substituteInPlace CMakeLists.txt --replace \ - "PUBLIC cxxopts" \ - "PUBLIC" - ''; - nativeBuildInputs = [ cmake pkg-config ]; buildInputs = [ - boost libevdevplus libuinputplus iodash cxxopts + scdoc ]; meta = with lib; { inherit (src.meta) homepage; description = "Generic Linux command-line automation tool"; - license = licenses.mit; - maintainers = with maintainers; [ willibutz ]; + license = licenses.agpl3Plus; + maintainers = with maintainers; [ willibutz kraem ]; platforms = with platforms; linux; }; } diff --git a/pkgs/tools/wayland/ydotool/fixup-cmakelists.patch b/pkgs/tools/wayland/ydotool/fixup-cmakelists.patch deleted file mode 100644 index 965d5c38d83..00000000000 --- a/pkgs/tools/wayland/ydotool/fixup-cmakelists.patch +++ /dev/null @@ -1,58 +0,0 @@ -From bb8bc44d22060cd1215712117cf30eae09f4f6ba Mon Sep 17 00:00:00 2001 -From: Jappie Klooster <jappieklooster@hotmail.com> -Date: Fri, 2 Apr 2021 14:04:14 -0400 -Subject: [PATCH] Fixup cmaklists - -We remove cpm, which is a package manager for c++, -which requires networking, so it's better just deleted. - -Furthermore we delete the adddirectory statements. -These want to modify directories outside of the sandbox. ---- - CMakeLists.txt | 26 -------------------------- - 1 file changed, 26 deletions(-) - -diff --git a/CMakeLists.txt b/CMakeLists.txt -index b5e8789..b797538 100644 ---- a/CMakeLists.txt -+++ b/CMakeLists.txt -@@ -13,30 +13,6 @@ endif() - - include(${CPM_DOWNLOAD_LOCATION}) - --CPMAddPackage( -- NAME IODash -- GITHUB_REPOSITORY YukiWorkshop/IODash -- VERSION 0.1.0 --) -- --CPMAddPackage( -- NAME libevdevPlus -- GITHUB_REPOSITORY YukiWorkshop/libevdevPlus -- VERSION 0.2.1 --) -- --CPMAddPackage( -- NAME libuInputPlus -- GITHUB_REPOSITORY YukiWorkshop/libuInputPlus -- VERSION 0.2.1 --) -- --CPMAddPackage( -- NAME cxxopts -- GITHUB_REPOSITORY jarro2783/cxxopts -- VERSION 3.0.0 -- GIT_TAG 2d8e17c4f88efce80e274cb03eeb902e055a91d3 --) - - set(SOURCE_FILES_LIBRARY - CommonIncludes.hpp -@@ -74,5 +50,3 @@ add_executable(ydotool ${SOURCE_FILES_CLIENT}) - target_link_libraries(ydotool ydotool_library dl pthread uInputPlus evdevPlus) - install(TARGETS ydotool DESTINATION ${CMAKE_INSTALL_BINDIR}) - --add_subdirectory(Daemon) --add_subdirectory(manpage) --- -2.29.2 - diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix index f4bb9c1ebc6..b68d1b0b27c 100644 --- a/pkgs/top-level/aliases.nix +++ b/pkgs/top-level/aliases.nix @@ -51,36 +51,36 @@ mapAliases ({ accounts-qt = throw "'accounts-qt' has been renamed to/replaced by 'libsForQt5.accounts-qt'"; # Converted to throw 2022-02-22 adobeReader = throw "'adobeReader' has been renamed to/replaced by 'adobe-reader'"; # Converted to throw 2022-02-22 adobe_flex_sdk = throw "'adobe_flex_sdk' has been renamed to/replaced by 'apache-flex-sdk'"; # Converted to throw 2022-02-22 - aesop = throw "aesop has been removed from nixpkgs, as it was unmaintained."; # Added 2021-08-05 + aesop = throw "aesop has been removed from nixpkgs, as it was unmaintained"; # Added 2021-08-05 ag = throw "'ag' has been renamed to/replaced by 'silver-searcher'"; # Converted to throw 2022-02-22 aircrackng = throw "'aircrackng' has been renamed to/replaced by 'aircrack-ng'"; # Converted to throw 2022-02-22 - airtame = throw "airtame has been removed due to being unmaintained."; # Added 2022-01-19 - aleth = throw "aleth (previously packaged as cpp_ethereum) has been removed; abandoned upstream."; # Added 2020-11-30 - alienfx = throw "alienfx has been removed."; # Added 2019-12-08 + airtame = throw "airtame has been removed due to being unmaintained"; # Added 2022-01-19 + aleth = throw "aleth (previously packaged as cpp_ethereum) has been removed; abandoned upstream"; # Added 2020-11-30 + alienfx = throw "alienfx has been removed"; # Added 2019-12-08 alsaLib = alsa-lib; # Added 2021-06-09 alsaOss = alsa-oss; # Added 2021-06-10 alsaPluginWrapper = alsa-plugins-wrapper; # Added 2021-06-10 alsaPlugins = alsa-plugins; # Added 2021-06-10 alsaTools = alsa-tools; # Added 2021-06-10 alsaUtils = alsa-utils; # Added 2021-06-10 - amazon-glacier-cmd-interface = throw "amazon-glacier-cmd-interface has been removed due to it being unmaintained."; # Added 2020-10-30 - aminal = throw "aminal was renamed to darktile."; # Added 2021-09-28 + amazon-glacier-cmd-interface = throw "amazon-glacier-cmd-interface has been removed due to it being unmaintained"; # Added 2020-10-30 + aminal = throw "aminal was renamed to darktile"; # Added 2021-09-28 ammonite-repl = throw "'ammonite-repl' has been renamed to/replaced by 'ammonite'"; # Converted to throw 2022-02-22 - amuleDaemon = throw "amuleDaemon was renamed to amule-daemon."; # Added 2022-02-11 - amuleGui = throw "amuleGui was renamed to amule-gui."; # Added 2022-02-11 - amsn = throw "amsn has been removed due to being unmaintained."; # Added 2020-12-09 + amuleDaemon = throw "amuleDaemon was renamed to amule-daemon"; # Added 2022-02-11 + amuleGui = throw "amuleGui was renamed to amule-gui"; # Added 2022-02-11 + amsn = throw "amsn has been removed due to being unmaintained"; # Added 2020-12-09 angelfish = libsForQt5.plasmaMobileGear.angelfish; # Added 2021-10-06 - antimicro = throw "antimicro has been removed as it was broken, see antimicrox instead."; # Added 2020-08-06 + antimicro = throw "antimicro has been removed as it was broken, see antimicrox instead"; # Added 2020-08-06 antimicroX = antimicrox; # Added 2021-10-31 ardour_5 = throw "ardour_5 has been removed. see https://github.com/NixOS/nixpkgs/issues/139549"; # Added 2021-09-28 arduino_core = throw "'arduino_core' has been renamed to/replaced by 'arduino-core'"; # Converted to throw 2022-02-22 - arora = throw "arora has been removed."; # Added 2020-09-09 + arora = throw "arora has been removed"; # Added 2020-09-09 asciidocFull = throw "'asciidocFull' has been renamed to/replaced by 'asciidoc-full'"; # Converted to throw 2022-02-22 asn1c = throw "asn1c has been removed: deleted by upstream"; # Added 2022-01-07 - asterisk_15 = throw "asterisk_15: Asterisk 15 is end of life and has been removed."; # Added 2020-10-07 + asterisk_15 = throw "asterisk_15: Asterisk 15 is end of life and has been removed"; # Added 2020-10-07 at_spi2_atk = throw "'at_spi2_atk' has been renamed to/replaced by 'at-spi2-atk'"; # Converted to throw 2022-02-22 at_spi2_core = throw "'at_spi2_core' has been renamed to/replaced by 'at-spi2-core'"; # Converted to throw 2022-02-22 - aucdtect = throw "aucdtect: Upstream no longer provides download urls."; # Added 2020-12-26 + aucdtect = throw "aucdtect: Upstream no longer provides download urls"; # Added 2020-12-26 avldrums-lv2 = x42-avldrums; # Added 2020-03-29 avxsynth = throw "avxsynth was removed because it was broken"; # Added 2021-05-18 azureus = throw "azureus is now known as vuze and the version in nixpkgs was really outdated"; # Added 2021-08-02 @@ -94,14 +94,14 @@ mapAliases ({ bash_5 = bash; # Added 2021-08-20 bashburn = throw "bashburn has been removed: deleted by upstream"; # Added 2022-01-07 batti = throw "batti has been removed from nixpkgs, as it was unmaintained"; # Added 2019-12-10 - bazaar = throw "bazaar has been deprecated by breezy."; # Added 2020-04-19 - bazaarTools = throw "bazaar has been deprecated by breezy."; # Added 2020-04-19 + bazaar = throw "bazaar has been deprecated by breezy"; # Added 2020-04-19 + bazaarTools = throw "bazaar has been deprecated by breezy"; # Added 2020-04-19 bcat = throw "bcat has been removed because upstream is dead"; # Added 2021-08-22 - beegfs = throw "beegfs has been removed."; # Added 2019-11-24 + beegfs = throw "beegfs has been removed"; # Added 2019-11-24 beret = throw "beret has been removed"; # Added 2021-11-16 bin_replace_string = throw "bin_replace_string has been removed: deleted by upstream"; # Added 2022-01-07 bitsnbots = throw "bitsnbots has been removed because it was broken and upstream missing"; # Added 2021-08-22 - blastem = throw "blastem has been removed from nixpkgs as it would still require python2."; # Added 2022-01-01 + blastem = throw "blastem has been removed from nixpkgs as it would still require python2"; # Added 2022-01-01 bluezFull = bluez; # Added 2019-12-03 bomi = throw "bomi has been removed from nixpkgs since it was broken and abandoned upstream"; # Added 2020-12-10 bootchart = throw "bootchart has been removed from nixpkgs, as it is without a maintainer"; # Added 2019-12-10 @@ -121,8 +121,8 @@ mapAliases ({ bitwarden_rs-vault = vaultwarden-vault; - blink = throw "blink has been removed from nixpkgs, it was unmaintained and required python2 at the time of removal."; # Added 2022-01-12 - bs1770gain = throw "bs1770gain has been removed from nixpkgs, as it had no maintainer or reverse dependencies."; # Added 2021-01-02 + blink = throw "blink has been removed from nixpkgs, it was unmaintained and required python2 at the time of removal"; # Added 2022-01-12 + bs1770gain = throw "bs1770gain has been removed from nixpkgs, as it had no maintainer or reverse dependencies"; # Added 2021-01-02 bsod = throw "bsod has been removed: deleted by upstream"; # Added 2022-01-07 btc1 = throw "btc1 has been removed, it was abandoned by upstream"; # Added 2020-11-03 buildPerlPackage = throw "'buildPerlPackage' has been renamed to/replaced by 'perlPackages.buildPerlPackage'"; # Converted to throw 2022-02-22 @@ -134,15 +134,15 @@ mapAliases ({ ### C ### caddy1 = throw "caddy 1.x has been removed from nixpkgs, as it's unmaintained: https://github.com/caddyserver/caddy/blob/master/.github/SECURITY.md#supported-versions"; # Added 2020-10-02 - calibre-py2 = throw "calibre-py2 has been removed from nixpkgs, as calibre has upgraded to python 3. Please use calibre as replacement."; # Added 2021-01-13 - calibre-py3 = throw "calibre-py3 has been removed from nixpkgs, as calibre's default python version is now 3. Please use calibre as replacement."; # Added 2021-01-13 + calibre-py2 = throw "calibre-py2 has been removed from nixpkgs, as calibre has upgraded to python 3. Please use calibre as replacement"; # Added 2021-01-13 + calibre-py3 = throw "calibre-py3 has been removed from nixpkgs, as calibre's default python version is now 3. Please use calibre as replacement"; # Added 2021-01-13 cantarell_fonts = throw "'cantarell_fonts' has been renamed to/replaced by 'cantarell-fonts'"; # Converted to throw 2022-02-22 - cargo-tree = throw "cargo-tree has been removed, use the builtin `cargo tree` command instead."; # Added 2020-08-20 - casperjs = throw "casperjs has been removed, it was abandoned by upstream and broken."; + cargo-tree = throw "cargo-tree has been removed, use the builtin `cargo tree` command instead"; # Added 2020-08-20 + casperjs = throw "casperjs has been removed, it was abandoned by upstream and broken"; catfish = xfce.catfish; # Added 2019-12-22 ccnet = throw "ccnet has been removed because seafile does not depend on it anymore"; # Added 2021-03-25 - cde-gtk-theme = throw "cde-gtk-theme has been removed from nixpkgs as it shipped with python2 scripts that didn't work anymore."; # Added 2022-01-12 - cgmanager = throw "cgmanager was deprecated by lxc and therefore removed from nixpkgs."; # Added 2020-06-05 + cde-gtk-theme = throw "cde-gtk-theme has been removed from nixpkgs as it shipped with python2 scripts that didn't work anymore"; # Added 2022-01-12 + cgmanager = throw "cgmanager was deprecated by lxc and therefore removed from nixpkgs"; # Added 2020-06-05 checkbashism = throw "'checkbashism' has been renamed to/replaced by 'checkbashisms'"; # Converted to throw 2022-02-22 chronos = throw "chronos has been removed from nixpkgs, as it was unmaintained"; # Added 2020-08-15 chunkwm = throw "chunkwm has been removed: abandoned by upstream"; # Added 2022-01-07 @@ -151,7 +151,7 @@ mapAliases ({ cinepaint = throw "cinepaint has been removed from nixpkgs, as it was unmaintained"; # Added 2019-12-10 ckb = throw "'ckb' has been renamed to/replaced by 'ckb-next'"; # Converted to throw 2022-02-22 callPackage_i686 = pkgsi686Linux.callPackage; - creddump = throw "creddump has been removed from nixpkgs as the upstream has abandoned the project."; # Added 2022-01-01 + creddump = throw "creddump has been removed from nixpkgs as the upstream has abandoned the project"; # Added 2022-01-01 # these are for convenience, not for backward compat and shouldn't expire clang5Stdenv = lowPrio llvmPackages_5.stdenv; @@ -168,6 +168,7 @@ mapAliases ({ claws-mail-gtk2 = throw "claws-mail-gtk2 was removed to get rid of Python 2, please use claws-mail"; # Added 2021-12-05 claws-mail-gtk3 = claws-mail; # Added 2021-07-10 clawsMail = throw "'clawsMail' has been renamed to/replaced by 'claws-mail'"; # Converted to throw 2022-02-22 + clearsilver = throw "clearsilver has been removed: abandoned by upstream"; # Added 2022-03-15 clutter_gtk = throw "'clutter_gtk' has been renamed to/replaced by 'clutter-gtk'"; # Converted to throw 2022-02-22 cmakeWithQt4Gui = throw "cmakeWithQt4Gui has been removed in favor of cmakeWithGui (Qt 5)"; # Added 2021-05 codimd = hedgedoc; # Added 2020-11-29 @@ -176,13 +177,13 @@ mapAliases ({ concurrencykit = libck; # Added 2021-03 conntrack_tools = throw "'conntrack_tools' has been renamed to/replaced by 'conntrack-tools'"; # Converted to throw 2022-02-22 cool-old-term = throw "'cool-old-term' has been renamed to/replaced by 'cool-retro-term'"; # Converted to throw 2022-02-22 - coprthr = throw "coprthr has been removed."; # Added 2019-12-08 - coredumper = throw "coredumper has been removed: abandoned by upstream."; # Added 2019-11-16 + coprthr = throw "coprthr has been removed"; # Added 2019-12-08 + coredumper = throw "coredumper has been removed: abandoned by upstream"; # Added 2019-11-16 corsmisc = throw "corsmisc has been removed (upstream is gone)"; # Added 2022-01-24 couchdb = throw "couchdb was removed from nixpkgs, use couchdb3 instead"; # Added 2021-03-03 couchdb2 = throw "couchdb2 was removed from nixpkgs, use couchdb3 instead"; # Added 2021-03-03 cpp-gsl = throw "'cpp-gsl' has been renamed to/replaced by 'microsoft_gsl'"; # Converted to throw 2022-02-22 - cpp_ethereum = throw "cpp_ethereum has been removed; abandoned upstream."; # Added 2020-11-30 + cpp_ethereum = throw "cpp_ethereum has been removed; abandoned upstream"; # Added 2020-11-30 cpuminer-multi = throw "cpuminer-multi has been removed: deleted by upstream"; # Added 2022-01-07 crafty = throw "crafty has been removed: deleted by upstream"; # Added 2022-01-07 cryptol = throw "cryptol was removed due to prolonged broken build"; # Added 2020-08-21 @@ -208,11 +209,11 @@ mapAliases ({ cudnn_cudatoolkit_9_2 = throw "cudnn_cudatoolkit_9_2 has been removed in favor of newer versions"; # Added 2021-04-18 cloud-print-connector = throw "Google Cloudprint is officially discontinued since Jan 2021, more info https://support.google.com/chrome/a/answer/9633006"; - cquery = throw "cquery has been removed because it is abandoned by upstream. Consider switching to clangd or ccls instead."; # Added 2020-06-15 + cquery = throw "cquery has been removed because it is abandoned by upstream. Consider switching to clangd or ccls instead"; # Added 2020-06-15 cups-googlecloudprint = throw "Google Cloudprint is officially discontinued since Jan 2021, more info https://support.google.com/chrome/a/answer/9633006"; cupsBjnp = throw "'cupsBjnp' has been renamed to/replaced by 'cups-bjnp'"; # Converted to throw 2022-02-22 cups_filters = throw "'cups_filters' has been renamed to/replaced by 'cups-filters'"; # Converted to throw 2022-02-22 - curaByDagoma = throw "curaByDagoma has been removed from nixpkgs, because it was unmaintained and dependent on python2 packages."; # Added 2022-01-12 + curaByDagoma = throw "curaByDagoma has been removed from nixpkgs, because it was unmaintained and dependent on python2 packages"; # Added 2022-01-12 curaLulzbot = throw "curaLulzbot has been removed due to insufficient upstream support for a modern dependency chain"; # Added 2021-10-23 cv = throw "'cv' has been renamed to/replaced by 'progress'"; # Converted to throw 2022-02-22 cvs_fast_export = cvs-fast-export; # Added 2021-06-10 @@ -221,8 +222,8 @@ mapAliases ({ d1x_rebirth = throw "'d1x_rebirth' has been renamed to/replaced by 'dxx-rebirth'"; # Converted to throw 2022-02-22 d2x_rebirth = throw "'d2x_rebirth' has been renamed to/replaced by 'dxx-rebirth'"; # Converted to throw 2022-02-22 - dart_dev = throw "Non-stable versions of Dart have been removed."; # Added 2020-01-15 - dart_old = throw "Non-stable versions of Dart have been removed."; # Added 2020-01-15 + dart_dev = throw "Non-stable versions of Dart have been removed"; # Added 2020-01-15 + dart_old = throw "Non-stable versions of Dart have been removed"; # Added 2020-01-15 dart_stable = dart; # Added 2020-01-15 dat = nodePackages.dat; dbus_daemon = throw "'dbus_daemon' has been renamed to/replaced by 'dbus.daemon'"; # Converted to throw 2022-02-22 @@ -255,7 +256,7 @@ mapAliases ({ desktop_file_utils = throw "'desktop_file_utils' has been renamed to/replaced by 'desktop-file-utils'"; # Converted to throw 2022-02-22 devicemapper = throw "'devicemapper' has been renamed to/replaced by 'lvm2'"; # Converted to throw 2022-02-22 digikam5 = throw "'digikam5' has been renamed to/replaced by 'digikam'"; # Converted to throw 2022-02-22 - displaycal = throw "displaycal has been removed from nixpkgs, as it hasn't migrated to python3."; # Added 2022-01-12 + displaycal = throw "displaycal has been removed from nixpkgs, as it hasn't migrated to python3"; # Added 2022-01-12 dmtx = throw "'dmtx' has been renamed to/replaced by 'dmtx-utils'"; # Converted to throw 2022-02-22 dnnl = oneDNN; # Added 2020-04-22 docbook5_xsl = throw "'docbook5_xsl' has been renamed to/replaced by 'docbook_xsl_ns'"; # Converted to throw 2022-02-22 @@ -267,9 +268,9 @@ mapAliases ({ dotnet-netcore = dotnet-runtime; # Added 2021-10-07 double_conversion = throw "'double_conversion' has been renamed to/replaced by 'double-conversion'"; # Converted to throw 2022-02-22 draftsight = throw "draftsight has been removed, no longer available as freeware"; # Added 2020-08-14 - dvb_apps = throw "dvb_apps has been removed."; # Added 2020-11-03 + dvb_apps = throw "dvb_apps has been removed"; # Added 2020-11-03 dwarf_fortress = throw "'dwarf_fortress' has been renamed to/replaced by 'dwarf-fortress'"; # Converted to throw 2022-02-22 - dwm-git = throw "dwm-git has been removed from nixpkgs, as it had no updates for 2 years not serving it's purpose."; # Added 2021-02-07 + dwm-git = throw "dwm-git has been removed from nixpkgs, as it had no updates for 2 years not serving it's purpose"; # Added 2021-02-07 dylibbundler = macdylibbundler; # Added 2021-04-24 ### E ### @@ -289,7 +290,7 @@ mapAliases ({ electron_7 = throw "electron_7 has been removed in favor of newer versions"; # added 2022-02-08 electron_8 = throw "electron_8 has been removed in favor of newer versions"; # added 2022-02-08 - electrum-dash = throw "electrum-dash has been removed from nixpkgs as the project is abandoned."; # Added 2022-01-01 + electrum-dash = throw "electrum-dash has been removed from nixpkgs as the project is abandoned"; # Added 2022-01-01 # Emacs emacs27Packages = emacs27.pkgs; # Added 2020-12-18 @@ -303,42 +304,42 @@ mapAliases ({ enblendenfuse = throw "'enblendenfuse' has been renamed to/replaced by 'enblend-enfuse'"; # Converted to throw 2022-02-22 encryptr = throw "encryptr was removed because it reached end of life"; # Added 2022-02-06 - envelope = throw "envelope has been removed from nixpkgs, as it was unmaintained."; # Added 2021-08-05 + envelope = throw "envelope has been removed from nixpkgs, as it was unmaintained"; # Added 2021-08-05 epoxy = libepoxy; # Added 2021-11-11 esniper = throw "esniper has been removed because upstream no longer maintains it (and it no longer works)"; # Added 2021-04-12 etcdctl = throw "'etcdctl' has been renamed to/replaced by 'etcd'"; # Converted to throw 2022-02-22 - euca2tools = throw "euca2ools has been removed because it is unmaintained upstream and still uses python2."; # Added 2022-01-01 - evilvte = throw "evilvte has been removed from nixpkgs for being unmaintained with security issues and dependant on an old version of vte which was removed."; # Added 2022-01-14 + euca2tools = throw "euca2ools has been removed because it is unmaintained upstream and still uses python2"; # Added 2022-01-01 + evilvte = throw "evilvte has been removed from nixpkgs for being unmaintained with security issues and dependant on an old version of vte which was removed"; # Added 2022-01-14 evolution_data_server = throw "'evolution_data_server' has been renamed to/replaced by 'evolution-data-server'"; # Converted to throw 2022-02-22 exfat-utils = throw "'exfat-utils' has been renamed to/replaced by 'exfat'"; # Converted to throw 2022-02-22 ### F ### - facette = throw "facette has been removed."; # Added 2020-01-06 + facette = throw "facette has been removed"; # Added 2020-01-06 fast-neural-doodle = throw "fast-neural-doodle has been removed, as the upstream project has been abandoned"; # Added 2020-03-28 fastnlo = fastnlo_toolkit; # Added 2021-04-24 - fedora-coreos-config-transpiler = throw "fedora-coreos-config-transpiler has been renamed to 'butane'."; # Added 2021-04-13 - fetchFromGithub = throw "You meant fetchFromGitHub, with a capital H."; + fedora-coreos-config-transpiler = throw "fedora-coreos-config-transpiler has been renamed to 'butane'"; # Added 2021-04-13 + fetchFromGithub = throw "You meant fetchFromGitHub, with a capital H"; ffadoFull = throw "'ffadoFull' has been renamed to/replaced by 'ffado'"; # Converted to throw 2022-02-22 finger_bsd = bsd-finger; fingerd_bsd = bsd-fingerd; - firefox-esr-68 = throw "Firefox 68 ESR was removed because it reached end of life with its final release 68.12esr on 2020-08-25."; + firefox-esr-68 = throw "Firefox 68 ESR was removed because it reached end of life with its final release 68.12esr on 2020-08-25"; firefox-esr-wrapper = throw "'firefox-esr-wrapper' has been renamed to/replaced by 'firefox-esr'"; # Converted to throw 2022-02-22 firefoxWrapper = throw "'firefoxWrapper' has been renamed to/replaced by 'firefox'"; # Converted to throw 2022-02-22 firefox-wrapper = throw "'firefox-wrapper' has been renamed to/replaced by 'firefox'"; # Converted to throw 2022-02-22 - firestr = throw "firestr has been removed."; # Added 2019-12-08 + firestr = throw "firestr has been removed"; # Added 2019-12-08 firmwareLinuxNonfree = linux-firmware; # Added 2022-01-09 fish-foreign-env = throw "fish-foreign-env has been replaced with fishPlugins.foreign-env"; # Added 2020-12-29, modified 2021-01-10 flameGraph = throw "'flameGraph' has been renamed to/replaced by 'flamegraph'"; # Converted to throw 2022-02-22 - flashplayer-standalone-debugger = throw "flashplayer-standalone-debugger has been removed as Adobe Flash Player is now deprecated."; # Added 2021-02-07 - flashplayer-standalone = throw "flashplayer-standalone has been removed as Adobe Flash Player is now deprecated."; # Added 2021-02-07 - flashplayer = throw "flashplayer has been removed as Adobe Flash Player is now deprecated."; # Added 2021-02-07 + flashplayer-standalone-debugger = throw "flashplayer-standalone-debugger has been removed as Adobe Flash Player is now deprecated"; # Added 2021-02-07 + flashplayer-standalone = throw "flashplayer-standalone has been removed as Adobe Flash Player is now deprecated"; # Added 2021-02-07 + flashplayer = throw "flashplayer has been removed as Adobe Flash Player is now deprecated"; # Added 2021-02-07 flashtool = throw "flashtool was removed from nixpkgs, because the download is down for copyright reasons and the site looks very fishy"; # Added 2021-06-31 flink_1_5 = throw "flink_1_5 was removed, use flink instead"; # Added 2021-01-25 - flutter-beta = throw "Non-stable versions of Flutter have been removed. You can use flutterPackages.mkFlutter to generate a package for other Flutter versions."; # Added 2020-01-15 - flutter-dev = throw "Non-stable versions of Flutter have been removed. You can use flutterPackages.mkFlutter to generate a package for other Flutter versions."; # Added 2020-01-15 - flvtool2 = throw "flvtool2 has been removed."; # Added 2020-11-03 - fme = throw "fme was removed, because it is old and uses Glade, a discontinued library."; # Added 2022-01-26 + flutter-beta = throw "Non-stable versions of Flutter have been removed. You can use flutterPackages.mkFlutter to generate a package for other Flutter versions"; # Added 2020-01-15 + flutter-dev = throw "Non-stable versions of Flutter have been removed. You can use flutterPackages.mkFlutter to generate a package for other Flutter versions"; # Added 2020-01-15 + flvtool2 = throw "flvtool2 has been removed"; # Added 2020-11-03 + fme = throw "fme was removed, because it is old and uses Glade, a discontinued library"; # Added 2022-01-26 foldingathome = fahclient; # Added 2020-09-03 font-awesome-ttf = throw "'font-awesome-ttf' has been renamed to/replaced by 'font-awesome'"; # Converted to throw 2022-02-22 @@ -358,7 +359,7 @@ mapAliases ({ ''; foomatic_filters = throw "'foomatic_filters' has been renamed to/replaced by 'foomatic-filters'"; # Converted to throw 2022-02-22 - fscryptctl-experimental = throw "The package fscryptctl-experimental has been removed. Please switch to fscryptctl."; # Added 2021-11-07 + fscryptctl-experimental = throw "The package fscryptctl-experimental has been removed. Please switch to fscryptctl"; # Added 2021-11-07 fsharp41 = throw "fsharp41 has been removed, please use dotnet-sdk_5 or later"; fslint = throw "fslint has been removed: end of life. Upstream recommends using czkawka (https://qarmin.github.io/czkawka/) instead"; # Added 2022-01-15 fuse_exfat = throw "'fuse_exfat' has been renamed to/replaced by 'exfat'"; # Converted to throw 2022-02-22 @@ -369,15 +370,15 @@ mapAliases ({ g4py = python3Packages.geant4; # Added 2020-06-06 gaia = throw "gaia has been removed because it seems abandoned upstream and uses no longer supported dependencies"; # Added 2020-06-06 - gdal_1_11 = throw "gdal_1_11 was removed. Use gdal instead."; # Added 2021-04-03 + gdal_1_11 = throw "gdal_1_11 was removed. Use gdal instead"; # Added 2021-04-03 gdb-multitarget = throw "'gdb-multitarget' has been renamed to/replaced by 'gdb'"; # Converted to throw 2022-02-22 gdk_pixbuf = throw "'gdk_pixbuf' has been renamed to/replaced by 'gdk-pixbuf'"; # Converted to throw 2022-02-22 - getmail = throw "getmail has been removed from nixpkgs, migrate to getmail6."; # Added 2022-01-12 + getmail = throw "getmail has been removed from nixpkgs, migrate to getmail6"; # Added 2022-01-12 gettextWithExpat = throw "'gettextWithExpat' has been renamed to/replaced by 'gettext'"; # Converted to throw 2022-02-22 gfm = throw "gfm has been removed"; # Added 2021-01-15 - giblib = throw " giblib has been removed from nixpkgs because upstream is gone."; # Added 2022-01-23 + giblib = throw " giblib has been removed from nixpkgs because upstream is gone"; # Added 2022-01-23 giflib_4_1 = throw "giflib_4_1 has been removed; use giflib instead"; # Added 2020-02-12 - git-bz = throw "giz-bz has been removed from nixpkgs as it is stuck on python2."; # Added 2022-01-01 + git-bz = throw "giz-bz has been removed from nixpkgs as it is stuck on python2"; # Added 2022-01-01 gitAndTools = self // { darcsToGit = darcs-to-git; @@ -390,19 +391,19 @@ mapAliases ({ }; # Added 2021-01-14 gitin = throw "gitin has been remove because it was unmaintained and depended on an insecure version of libgit2"; # Added 2021-12-07 - gitinspector = throw "gitinspector has been removed because it doesn't work with python3."; # Added 2022-01-12 + gitinspector = throw "gitinspector has been removed because it doesn't work with python3"; # Added 2022-01-12 gksu = throw "gksu has been removed"; # Added 2022-01-16 glib_networking = throw "'glib_networking' has been renamed to/replaced by 'glib-networking'"; # Converted to throw 2022-02-22 gmailieer = lieer; # Added 2020-04-19 gmic_krita_qt = gmic-qt-krita; # Added 2019-09-07 gmvault = throw "gmvault has been removed because it is unmaintained, mostly broken, and insecure"; # Added 2021-03-08 - gnash = throw "gnash has been removed; broken and abandoned upstream."; # added 2022-02-06 + gnash = throw "gnash has been removed; broken and abandoned upstream"; # added 2022-02-06 gnome-passwordsafe = gnome-secrets; # added 2022-01-30 gnome-mpv = celluloid; # Added 2019-08-22 gnome-sharp = throw "gnome-sharp has been removed from nixpkgs"; # Added 2022-01-15 gnome-themes-standard = throw "'gnome-themes-standard' has been renamed to/replaced by 'gnome-themes-extra'"; # Converted to throw 2022-02-22 gnome_user_docs = gnome-user-docs; # Added 2019-11-20 - gnome15 = throw "gnome15 has been removed from nixpkgs, as it's unmaintained and depends on deprecated libraries."; # Added 2019-12-10 + gnome15 = throw "gnome15 has been removed from nixpkgs, as it's unmaintained and depends on deprecated libraries"; # Added 2019-12-10 gnome_doc_utils = throw "'gnome_doc_utils' has been renamed to/replaced by 'gnome-doc-utils'"; # Converted to throw 2022-02-22 gnome_themes_standard = throw "'gnome_themes_standard' has been renamed to/replaced by 'gnome-themes-standard'"; # Converted to throw 2022-02-22 @@ -439,8 +440,8 @@ mapAliases ({ gpgstats = throw "gpgstats has been removed: upstream is gone"; # Added 2022-02-06 graalvm11 = graalvm11-ce; - graalvm8-ce = throw "graalvm8-ce has been removed by upstream."; # Added 2021-10-19 - graalvm8 = throw "graalvm8-ce has been removed by upstream."; # Added 2021-10-19 + graalvm8-ce = throw "graalvm8-ce has been removed by upstream"; # Added 2021-10-19 + graalvm8 = throw "graalvm8-ce has been removed by upstream"; # Added 2021-10-19 gr-ais = gnuradio3_7.pkgs.ais; # Added 2019-05-27, changed 2020-10-16 grantlee5 = throw "'grantlee5' has been renamed to/replaced by 'libsForQt5.grantlee'"; # Converted to throw 2022-02-22 gr-gsm = gnuradio3_7.pkgs.gsm; # Added 2019-05-27, changed 2020-10-16 @@ -469,23 +470,23 @@ mapAliases ({ ### H ### - hal-flash = throw "hal-flash has been removed as Adobe Flash Player is now deprecated."; # Added 2021-02-07 + hal-flash = throw "hal-flash has been removed as Adobe Flash Player is now deprecated"; # Added 2021-02-07 hawkthorne = throw "hawkthorne has been removed because it depended on a broken version of love"; # Added 2022-01-15 heimdalFull = throw "'heimdalFull' has been renamed to/replaced by 'heimdal'"; # Converted to throw 2022-02-22 heme = throw "heme has been removed: upstream is gone"; # added 2022-02-06 hepmc = hepmc2; # Added 2019-08-05 - hexen = throw "hexen (SDL port) has been removed: abandoned by upstream."; # Added 2019-12-11 + hexen = throw "hexen (SDL port) has been removed: abandoned by upstream"; # Added 2019-12-11 hicolor_icon_theme = throw "'hicolor_icon_theme' has been renamed to/replaced by 'hicolor-icon-theme'"; # Converted to throw 2022-02-22 holochain-go = throw "holochain-go was abandoned by upstream"; # Added 2022-01-01 htmlTidy = throw "'htmlTidy' has been renamed to/replaced by 'html-tidy'"; # Converted to throw 2022-02-22 ht-rust = xh; # Added 2021-02-13 - hydra-flakes = throw "hydra-flakes: Flakes support has been merged into Hydra's master. Please use `hydra-unstable` now."; # Added 2020-04-06 + hydra-flakes = throw "hydra-flakes: Flakes support has been merged into Hydra's master. Please use `hydra-unstable` now"; # Added 2020-04-06 ### I ### iana_etc = throw "'iana_etc' has been renamed to/replaced by 'iana-etc'"; # Converted to throw 2022-02-22 iasl = throw "iasl has been removed, use acpica-tools instead"; # Added 2021-08-08 - icecat-bin = throw "icecat-bin has been removed, the binary builds are not maintained upstream."; # Added 2022-02-15 + icecat-bin = throw "icecat-bin has been removed, the binary builds are not maintained upstream"; # Added 2022-02-15 icedtea8_web = adoptopenjdk-icedtea-web; # Added 2019-08-21 icedtea_web = adoptopenjdk-icedtea-web; # Added 2019-08-21 idea = throw "'idea' has been renamed to/replaced by 'jetbrains'"; # Converted to throw 2022-02-22 @@ -494,10 +495,10 @@ mapAliases ({ imagemagick7 = imagemagick; # Added 2021-02-22 imagemagick7_light = imagemagick_light; # Added 2021-02-22 impressive = throw "impressive has been removed due to lack of released python 2 support and maintainership in nixpkgs"; # Added 2022-01-27 - i-score = throw "i-score has been removed: abandoned upstream."; # Added 2020-11-21 - inboxer = throw "inboxer has been removed as it is no longer maintained and no longer works as Google shut down the inbox service this package wrapped."; + i-score = throw "i-score has been removed: abandoned upstream"; # Added 2020-11-21 + inboxer = throw "inboxer has been removed as it is no longer maintained and no longer works as Google shut down the inbox service this package wrapped"; infiniband-diags = rdma-core; # Added 2019-08-09 - ino = throw "ino has been removed from nixpkgs, the project is stuck on python2 and upstream has archived the project."; # Added 2022-01-12 + ino = throw "ino has been removed from nixpkgs, the project is stuck on python2 and upstream has archived the project"; # Added 2022-01-12 inotifyTools = inotify-tools; inter-ui = inter; # Added 2021-03-27 iops = throw "iops was removed: upstream is gone"; # Added 2022-02-06 @@ -508,13 +509,13 @@ mapAliases ({ jack2Full = jack2; # moved from top-level 2021-03-14 - jamomacore = throw "jamomacore has been removed: abandoned upstream."; # Added 2020-11-21 + jamomacore = throw "jamomacore has been removed: abandoned upstream"; # Added 2020-11-21 jbidwatcher = throw "jbidwatcher was discontinued in march 2021"; # Added 2021-03-15 jbuilder = throw "'jbuilder' has been renamed to/replaced by 'dune_1'"; # Converted to throw 2022-02-22 - jellyfin_10_5 = throw "Jellyfin 10.5 is no longer supported and contains a security vulnerability. Please upgrade to a newer version."; # Added 2021-04-26 + jellyfin_10_5 = throw "Jellyfin 10.5 is no longer supported and contains a security vulnerability. Please upgrade to a newer version"; # Added 2021-04-26 jikes = throw "jikes was deprecated on 2019-10-07: abandoned by upstream"; joseki = throw "'joseki' has been renamed to/replaced by 'apache-jena-fuseki'"; # Converted to throw 2022-02-22 - journalbeat7 = throw "journalbeat has been removed upstream. Use filebeat with the journald input instead."; + journalbeat7 = throw "journalbeat has been removed upstream. Use filebeat with the journald input instead"; # Julia julia_07 = throw "julia_07 has been deprecated in favor of the latest LTS version"; # Added 2020-09-15 @@ -539,18 +540,18 @@ mapAliases ({ keepassx-community = throw "'keepassx-community' has been renamed to/replaced by 'keepassxc'"; # Converted to throw 2022-02-22 keepassx-reboot = throw "'keepassx-reboot' has been renamed to/replaced by 'keepassx-community'"; # Converted to throw 2022-02-22 keepassx2-http = throw "'keepassx2-http' has been renamed to/replaced by 'keepassx-reboot'"; # Converted to throw 2022-02-22 - keepnote = throw "keepnote has been removed from nixpkgs, as it is stuck on python2."; # Added 2022-01-01 + keepnote = throw "keepnote has been removed from nixpkgs, as it is stuck on python2"; # Added 2022-01-01 kerberos = libkrb5; # moved from top-level 2021-03-14 kexectools = kexec-tools; # Added 2021-09-03 keybase-go = throw "'keybase-go' has been renamed to/replaced by 'keybase'"; # Converted to throw 2022-02-22 - keymon = throw "keymon has been removed from nixpkgs, as it's abandoned and archived."; # Added 2019-12-10 + keymon = throw "keymon has been removed from nixpkgs, as it's abandoned and archived"; # Added 2019-12-10 keysmith = libsForQt5.plasmaMobileGear.keysmith; # Added 2021-07-14 kibana7-oss = throw "kibana7-oss has been removed, as the distribution is no longer provided by upstream. https://github.com/NixOS/nixpkgs/pull/114456"; # Added 2021-06-09 kicad-with-packages3d = kicad; # Added 2019-11-25 - kindlegen = throw "kindlegen has been removed from nixpkgs, as it's abandoned and no longer available for download."; # Added 2021-03-09 - kinetic-cpp-client = throw "kinetic-cpp-client has been removed from nixpkgs, as it's abandoned."; # Added 2020-04-28 + kindlegen = throw "kindlegen has been removed from nixpkgs, as it's abandoned and no longer available for download"; # Added 2021-03-09 + kinetic-cpp-client = throw "kinetic-cpp-client has been removed from nixpkgs, as it's abandoned"; # Added 2020-04-28 kino = throw "kino has been removed because it was broken and abandoned"; # Added 2021-04-25 - knockknock = throw "knockknock has been removed from nixpkgs because the upstream project is abandoned."; # Added 2022-01-01 + knockknock = throw "knockknock has been removed from nixpkgs because the upstream project is abandoned"; # Added 2022-01-01 kodiGBM = kodi-gbm; kodiPlain = kodi; kodiPlainWayland = kodi-wayland; @@ -572,8 +573,8 @@ mapAliases ({ libcap_manpages = throw "'libcap_manpages' has been renamed to/replaced by 'libcap.doc'"; # Converted to throw 2022-02-22 libcap_pam = if stdenv.isLinux then libcap.pam else null; # Added 2016-04-29 libcap_progs = throw "'libcap_progs' has been renamed to/replaced by 'libcap.out'"; # Converted to throw 2022-02-22 - libco-canonical = throw "libco-canonical: Canonical deleted the repo, libco-canonical is not used anymore."; # Added 2021-05-16 - libcroco = throw "libcroco has been removed as it's no longer used in any derivations."; # Added 2020-03-04 + libco-canonical = throw "libco-canonical: Canonical deleted the repo, libco-canonical is not used anymore"; # Added 2021-05-16 + libcroco = throw "libcroco has been removed as it's no longer used in any derivations"; # Added 2020-03-04 libdbusmenu-glib = throw "'libdbusmenu-glib' has been renamed to/replaced by 'libdbusmenu'"; # Converted to throw 2022-02-22 libdbusmenu_qt5 = throw "'libdbusmenu_qt5' has been renamed to/replaced by 'libsForQt5.libdbusmenu'"; # Converted to throw 2022-02-22 liberation_ttf_v1_from_source = throw "'liberation_ttf_v1_from_source' has been renamed to/replaced by 'liberation_ttf_v1'"; # Converted to throw 2022-02-22 @@ -591,7 +592,7 @@ mapAliases ({ libintlOrEmpty = lib.optional (!stdenv.isLinux || stdenv.hostPlatform.libc != "glibc") gettext; # Added 2018-03-14 libjpeg_drop = libjpeg_original; # Added 2020-06-05 libjson_rpc_cpp = throw "'libjson_rpc_cpp' has been renamed to/replaced by 'libjson-rpc-cpp'"; # Converted to throw 2022-02-22 - libkml = throw "libkml has been removed from nixpkgs, as it's abandoned and no package needed it."; # Added 2021-11-09 + libkml = throw "libkml has been removed from nixpkgs, as it's abandoned and no package needed it"; # Added 2021-11-09 liblapackWithoutAtlas = throw "'liblapackWithoutAtlas' has been renamed to/replaced by 'lapack-reference'"; # Converted to throw 2022-02-22 liblastfm = libsForQt5.liblastfm; # Added 2020-06-14 liblrdf = throw "'liblrdf' has been renamed to/replaced by 'lrdf'"; # Converted to throw 2022-02-22 @@ -601,10 +602,11 @@ mapAliases ({ libqrencode = throw "'libqrencode' has been renamed to/replaced by 'qrencode'"; # Converted to throw 2022-02-22 librdf = lrdf; # Added 2020-03-22 librecad2 = throw "'librecad2' has been renamed to/replaced by 'librecad'"; # Converted to throw 2022-02-22 + libressl_3_2 = throw "'libressl_3_2' has reached end-of-life "; # Added 2022-03-19 librsync_0_9 = throw "librsync_0_9 has been removed"; # Added 2021-07-24 libseat = seatd; # Added 2021-06-24 - libsexy = throw "libsexy has been removed from nixpkgs, as it's abandoned and no package needed it."; # Added 2019-12-10 - libstdcxxHook = throw "libstdcxx hook has been removed because cc-wrapper is now directly aware of the c++ standard library intended to be used."; # Added 2020-06-22 + libsexy = throw "libsexy has been removed from nixpkgs, as it's abandoned and no package needed it"; # Added 2019-12-10 + libstdcxxHook = throw "libstdcxx hook has been removed because cc-wrapper is now directly aware of the c++ standard library intended to be used"; # Added 2020-06-22 libsysfs = throw "'libsysfs' has been renamed to/replaced by 'sysfsutils'"; # Converted to throw 2022-02-22 libtidy = throw "'libtidy' has been renamed to/replaced by 'html-tidy'"; # Converted to throw 2022-02-22 libtorrentRasterbar = libtorrent-rasterbar; # Added 2020-12-20 @@ -620,10 +622,10 @@ mapAliases ({ libva1-full = throw "'libva1-full' has been renamed to/replaced by 'libva1'"; # Converted to throw 2022-02-22 libwnck3 = libwnck; lilypond-unstable = lilypond; # Added 2021-03-11 - lilyterm = throw "lilyterm has been removed from nixpkgs, because it was relying on a vte version that depended on python2."; # Added 2022-01-14 - lilyterm-git = throw "lilyterm-git has been removed from nixpkgs, because it was relying on a vte version that depended on python2."; # Added 2022-01-14 + lilyterm = throw "lilyterm has been removed from nixpkgs, because it was relying on a vte version that depended on python2"; # Added 2022-01-14 + lilyterm-git = throw "lilyterm-git has been removed from nixpkgs, because it was relying on a vte version that depended on python2"; # Added 2022-01-14 links = throw "'links' has been renamed to/replaced by 'links2'"; # Converted to throw 2022-02-22 - linuxband = throw "linuxband has been removed from nixpkgs, as it's abandoned upstream."; # Added 2021-12-09 + linuxband = throw "linuxband has been removed from nixpkgs, as it's abandoned upstream"; # Added 2021-12-09 # Linux kernels linux-rt_5_10 = linuxKernel.kernels.linux_rt_5_10; @@ -698,7 +700,7 @@ mapAliases ({ lua5_1_sockets = throw "'lua5_1_sockets' has been renamed to/replaced by 'lua51Packages.luasocket'"; # Converted to throw 2022-02-22 lua5_expat = throw "'lua5_expat' has been renamed to/replaced by 'luaPackages.luaexpat'"; # Converted to throw 2022-02-22 lua5_sec = throw "'lua5_sec' has been renamed to/replaced by 'luaPackages.luasec'"; # Converted to throw 2022-02-22 - lumpy = throw "lumpy has been removed from nixpkgs, as it is stuck on python2."; # Added 2022-01-12 + lumpy = throw "lumpy has been removed from nixpkgs, as it is stuck on python2"; # Added 2022-01-12 lxappearance-gtk3 = throw "lxappearance-gtk3 has been removed. Use lxappearance instead, which now defaults to Gtk3"; # Added 2020-06-03 lzma = xz; # moved from top-level 2021-03-14 @@ -706,7 +708,7 @@ mapAliases ({ m3d-linux = throw "'m3d-linux' has been renamed to/replaced by 'm33-linux'"; # Converted to throw 2022-02-22 mail-notification = throw "mail-notification has been removed from nixpkgs, as it's unmaintained and has dependencies on old gnome libraries we want to remove"; # Added 2021-08-21 - mailpile = throw "mailpile was removed from nixpkgs, as it is stuck on python2."; # Added 2022-01-12 + mailpile = throw "mailpile was removed from nixpkgs, as it is stuck on python2"; # Added 2022-01-12 man_db = throw "'man_db' has been renamed to/replaced by 'man-db'"; # Converted to throw 2022-02-22 manpages = throw "'manpages' has been renamed to/replaced by 'man-pages'"; # Converted to throw 2022-02-22 marathon = throw "marathon has been removed from nixpkgs, as it's unmaintained"; # Added 2020-08-15 @@ -723,11 +725,11 @@ mapAliases ({ mercurial_4 = throw "mercurial_4 has been removed as it's unmaintained"; # Added 2021-10-18 mesos = throw "mesos has been removed from nixpkgs, as it's unmaintained"; # Added 2020-08-15 mess = mame; # Added 2019-10-30 - metamorphose2 = throw "metamorphose2 has been removed from nixpkgs, as it was stuck on python2."; # Added 2022-01-12 - mididings = throw "mididings has been removed from nixpkgs as it doesn't support recent python3 versions and its upstream stopped maintaining it."; # Added 2022-01-12 + metamorphose2 = throw "metamorphose2 has been removed from nixpkgs, as it was stuck on python2"; # Added 2022-01-12 + mididings = throw "mididings has been removed from nixpkgs as it doesn't support recent python3 versions and its upstream stopped maintaining it"; # Added 2022-01-12 midoriWrapper = throw "'midoriWrapper' has been renamed to/replaced by 'midori'"; # Converted to throw 2022-02-22 mime-types = mailcap; # Added 2022-01-21 - mimms = throw "mimms has been removed from nixpkgs as the upstream project is stuck on python2."; # Added 2022-01-01 + mimms = throw "mimms has been removed from nixpkgs as the upstream project is stuck on python2"; # Added 2022-01-01 minergate-cli = throw "minergatecli has been removed from nixpkgs, because the package is unmaintained and the site has a bad reputation"; # Added 2021-08-13 minergate = throw "minergate has been removed from nixpkgs, because the package is unmaintained and the site has a bad reputation"; # Added 2021-08-13 minetime = throw "minetime has been removed from nixpkgs, because it was discontinued 2021-06-22"; # Added 2021-10-14 @@ -735,13 +737,13 @@ mapAliases ({ mist = throw "mist has been removed as the upstream project has been abandoned, see https://github.com/ethereum/mist#mist-browser-deprecated"; # Added 2020-08-15 mlt-qt5 = throw "'mlt-qt5' has been renamed to/replaced by 'libsForQt5.mlt'"; # Converted to throw 2022-02-22 mobile_broadband_provider_info = throw "'mobile_broadband_provider_info' has been renamed to/replaced by 'mobile-broadband-provider-info'"; # Converted to throw 2022-02-22 - moby = throw "moby has been removed, merged into linuxkit in 2018. Use linuxkit instead."; + moby = throw "moby has been removed, merged into linuxkit in 2018. Use linuxkit instead"; module_init_tools = throw "'module_init_tools' has been renamed to/replaced by 'kmod'"; # Converted to throw 2022-02-22 monero = monero-cli; # Added 2021-11-28 monodevelop = throw "monodevelop has been removed from nixpgks"; # Added 2022-01-15 mopidy-gmusic = throw "mopidy-gmusic has been removed because Google Play Music was discontinued"; # Added 2021-03-07 - mopidy-local-images = throw "mopidy-local-images has been removed as it's unmaintained. Its functionality has been merged into the mopidy-local extension."; # Added 2020-10-18 - mopidy-local-sqlite = throw "mopidy-local-sqlite has been removed as it's unmaintained. Its functionality has been merged into the mopidy-local extension."; # Added 2020-10-18 + mopidy-local-images = throw "mopidy-local-images has been removed as it's unmaintained. Its functionality has been merged into the mopidy-local extension"; # Added 2020-10-18 + mopidy-local-sqlite = throw "mopidy-local-sqlite has been removed as it's unmaintained. Its functionality has been merged into the mopidy-local extension"; # Added 2020-10-18 morituri = throw "'morituri' has been renamed to/replaced by 'whipper'"; # Converted to throw 2022-02-22 mozart-binary = mozart2-binary; # Added 2019-09-23 @@ -770,7 +772,7 @@ mapAliases ({ mumsi = throw "mumsi has been removed from nixpkgs, as it's unmaintained and does not build anymore"; # Added 2021-11-18 mupen64plus1_5 = throw "'mupen64plus1_5' has been renamed to/replaced by 'mupen64plus'"; # Converted to throw 2022-02-22 mx = throw "graalvm8 and its tools were deprecated in favor of graalvm8-ce"; # Added 2021-10-15 - mxisd = throw "mxisd has been removed from nixpkgs as it has reached end of life, see https://github.com/kamax-matrix/mxisd/blob/535e0a5b96ab63cb0ddef90f6f42c5866407df95/EOL.md#end-of-life-notice . ma1sd may be a suitable alternative."; # Added 2021-04-15 + mxisd = throw "mxisd has been removed from nixpkgs as it has reached end of life, see https://github.com/kamax-matrix/mxisd/blob/535e0a5b96ab63cb0ddef90f6f42c5866407df95/EOL.md#end-of-life-notice . ma1sd may be a suitable alternative"; # Added 2021-04-15 mysqlWorkbench = throw "'mysqlWorkbench' has been renamed to/replaced by 'mysql-workbench'"; # Converted to throw 2022-02-22 ### N ### @@ -814,15 +816,15 @@ mapAliases ({ ### O ### - oracleXE = throw "oracleXE has been removed, as it's heavily outdated and unmaintained."; # Added 2020-10-09 + oracleXE = throw "oracleXE has been removed, as it's heavily outdated and unmaintained"; # Added 2020-10-09 OVMF-CSM = throw "OVMF-CSM has been removed in favor of OVMFFull"; # Added 2021-10-16 OVMF-secureBoot = throw "OVMF-secureBoot has been removed in favor of OVMFFull"; # Added 2021-10-16 oauth2_proxy = oauth2-proxy; # Added 2021-04-18 - oblogout = throw "oblogout has been removed from nixpkgs, as it's archived upstream."; # Added 2019-12-10 - octoprint-plugins = throw "octoprint-plugins are now part of the octoprint.python.pkgs package set."; # Added 2021-01-24 + oblogout = throw "oblogout has been removed from nixpkgs, as it's archived upstream"; # Added 2019-12-10 + octoprint-plugins = throw "octoprint-plugins are now part of the octoprint.python.pkgs package set"; # Added 2021-01-24 ocz-ssd-guru = throw "ocz-ssd-guru has been removed due to there being no source available"; # Added 2021-07-12 ofp = throw "ofp is not compatible with odp-dpdk"; - olifant = throw "olifant has been removed from nixpkgs, as it was unmaintained."; # Added 2021-08-05 + olifant = throw "olifant has been removed from nixpkgs, as it was unmaintained"; # Added 2021-08-05 onnxruntime = throw "onnxruntime has been removed due to poor maintainability"; # Added 2020-12-04 openbazaar = throw "openbazzar has been removed from nixpkgs as upstream has abandoned the project"; # Added 2022-01-06 openbazaar-client = throw "openbazzar-client has been removed from nixpkgs as upstream has abandoned the project"; # Added 2022-01-06 @@ -838,7 +840,7 @@ mapAliases ({ opensans-ttf = throw "'opensans-ttf' has been renamed to/replaced by 'open-sans'"; # Converted to throw 2022-02-22 openssh_with_kerberos = throw "'openssh_with_kerberos' has been renamed to/replaced by 'openssh'"; # Converted to throw 2022-02-22 orchis = orchis-theme; # Added 2021-06-09 - osquery = throw "osquery has been removed."; # Added 2019-11-24 + osquery = throw "osquery has been removed"; # Added 2019-11-24 osxfuse = macfuse-stubs; # Added 2021-03-20 otter-browser = throw "otter-browser has been removed from nixpkgs, as it was unmaintained"; # Added 2020-02-02 owncloudclient = throw "'owncloudclient' has been renamed to/replaced by 'owncloud-client'"; # Converted to throw 2022-02-22 @@ -856,7 +858,7 @@ mapAliases ({ pass-otp = throw "'pass-otp' has been renamed to/replaced by 'pass.withExtensions'"; # Converted to throw 2022-02-22 pdfmod = throw "pdfmod has been removed"; # Added 2022-01-15 pdfread = throw "pdfread has been remove because it is unmaintained for years and the sources are no longer available"; # Added 2021-07-22 - pdf-redact-tools = throw "pdf-redact-tools has been removed from nixpkgs because the upstream has abandoned the project."; # Added 2022-01-01 + pdf-redact-tools = throw "pdf-redact-tools has been removed from nixpkgs because the upstream has abandoned the project"; # Added 2022-01-01 pdf2htmlEx = throw "pdf2htmlEx has been removed from nixpkgs, as it was unmaintained"; # Added 2020-11-03 perlXMLParser = throw "'perlXMLParser' has been renamed to/replaced by 'perlPackages.XMLParser'"; # Converted to throw 2022-02-22 perlArchiveCpio = throw "'perlArchiveCpio' has been renamed to/replaced by 'perlPackages.ArchiveCpio'"; # Converted to throw 2022-02-22 @@ -867,7 +869,7 @@ mapAliases ({ phantomjs = throw "phantomjs 1.9.8 has been dropped due to lack of maintenance and security issues"; # Added 2022-02-20 # Obsolete PHP version aliases - php73 = throw "php73 has been dropped due to the lack of maintanence from upstream for future releases."; # Added 2021-06-03 + php73 = throw "php73 has been dropped due to the lack of maintanence from upstream for future releases"; # Added 2021-06-03 php73Packages = php73; # Added 2021-06-03 php73Extensions = php73; # Added 2021-06-03 @@ -925,17 +927,17 @@ mapAliases ({ pidginotr = throw "'pidginotr' has been renamed to/replaced by 'pidgin-otr'"; # Converted to throw 2022-02-22 pidginsipe = throw "'pidginsipe' has been renamed to/replaced by 'pidgin-sipe'"; # Converted to throw 2022-02-22 pidginwindowmerge = throw "'pidginwindowmerge' has been renamed to/replaced by 'pidgin-window-merge'"; # Converted to throw 2022-02-22 - pifi = throw "pifi has been removed from nixpkgs, as it is no longer developed."; # Added 2022-01-19 + pifi = throw "pifi has been removed from nixpkgs, as it is no longer developed"; # Added 2022-01-19 piwik = throw "'piwik' has been renamed to/replaced by 'matomo'"; # Converted to throw 2022-02-22 pkgconfig = pkg-config; # Added 2018-02-02, moved to aliases.nix 2021-01-18 pkgconfigUpstream = throw "'pkgconfigUpstream' has been renamed to/replaced by 'pkg-configUpstream'"; # Converted to throw 2022-02-22 - planner = throw "planner has been removed from nixpkgs, as it is no longer developed and still uses python2/PyGTK."; # Added 2021-02-02 + planner = throw "planner has been removed from nixpkgs, as it is no longer developed and still uses python2/PyGTK"; # Added 2021-02-02 pleroma-otp = pleroma; # Added 2021-07-10 plexpy = throw "'plexpy' has been renamed to/replaced by 'tautulli'"; # Converted to throw 2022-02-22 pltScheme = racket; # just to be sure pmtools = throw "'pmtools' has been renamed to/replaced by 'acpica-tools'"; # Converted to throw 2022-02-22 polarssl = throw "'polarssl' has been renamed to/replaced by 'mbedtls'"; # Converted to throw 2022-02-22 - polysh = throw "polysh has been removed from nixpkgs as the upstream has abandoned the project."; # Added 2022-01-01 + polysh = throw "polysh has been removed from nixpkgs as the upstream has abandoned the project"; # Added 2022-01-01 poppler_qt5 = throw "'poppler_qt5' has been renamed to/replaced by 'libsForQt5.poppler'"; # Converted to throw 2022-02-22 # postgresql @@ -960,40 +962,40 @@ mapAliases ({ tlauncher = throw "tlauncher has been removed because there questionable practices and legality concerns"; tsearch_extras = postgresqlPackages.tsearch_extras; - phonon = throw "phonon: Please use libsForQt5.phonon, as Qt4 support in this package has been removed."; # Added 2019-11-22 - phonon-backend-gstreamer = throw "phonon-backend-gstreamer: Please use libsForQt5.phonon-backend-gstreamer, as Qt4 support in this package has been removed."; # Added 2019-11-22 - phonon-backend-vlc = throw "phonon-backend-vlc: Please use libsForQt5.phonon-backend-vlc, as Qt4 support in this package has been removed."; # Added 2019-11-22 + phonon = throw "phonon: Please use libsForQt5.phonon, as Qt4 support in this package has been removed"; # Added 2019-11-22 + phonon-backend-gstreamer = throw "phonon-backend-gstreamer: Please use libsForQt5.phonon-backend-gstreamer, as Qt4 support in this package has been removed"; # Added 2019-11-22 + phonon-backend-vlc = throw "phonon-backend-vlc: Please use libsForQt5.phonon-backend-vlc, as Qt4 support in this package has been removed"; # Added 2019-11-22 pinentry_curses = pinentry-curses; # Added 2019-10-14 pinentry_emacs = pinentry-emacs; # Added 2019-10-14 pinentry_gnome = pinentry-gnome; # Added 2019-10-14 pinentry_gtk2 = pinentry-gtk2; # Added 2019-10-14 pinentry_qt = pinentry-qt; # Added 2019-10-14 pinentry_qt5 = pinentry-qt; # Added 2020-02-11 - pmenu = throw "pmenu has been removed from nixpkgs, as its maintainer is no longer interested in the package."; # Added 2019-12-10 + pmenu = throw "pmenu has been removed from nixpkgs, as its maintainer is no longer interested in the package"; # Added 2019-12-10 privateer = throw "privateer was removed because it was broken"; # Added 2021-05-18 processing3 = processing; # Added 2019-08-16 procps-ng = throw "'procps-ng' has been renamed to/replaced by 'procps'"; # Converted to throw 2022-02-22 proglodyte-wasm = throw "proglodyte-wasm has been removed from nixpkgs, because it is unmaintained since 5 years with zero github stars"; # Added 2021-06-30 - proj_5 = throw "Proj-5 has been removed from nixpkgs, use proj instead."; # Added 2021-04-12 - prometheus-cups-exporter = throw "outdated and broken by design; removed by developer."; # Added 2021-03-16 + proj_5 = throw "Proj-5 has been removed from nixpkgs, use proj instead"; # Added 2021-04-12 + prometheus-cups-exporter = throw "outdated and broken by design; removed by developer"; # Added 2021-03-16 pulseaudioLight = throw "'pulseaudioLight' has been renamed to/replaced by 'pulseaudio'"; # Converted to throw 2022-02-22 - pulseeffects = throw "Use pulseeffects-legacy if you use PulseAudio and easyeffects if you use PipeWire."; # Added 2021-02-13 + pulseeffects = throw "Use pulseeffects-legacy if you use PulseAudio and easyeffects if you use PipeWire"; # Added 2021-02-13 pulseeffects-pw = easyeffects; # Added 2021-07-07 pyIRCt = throw "pyIRCt has been removed from nixpkgs as it is unmaintained and python2-only"; pyMAILt = throw "pyMAILt has been removed from nixpkgs as it is unmaintained and python2-only"; pybind11 = throw "pybind11 was removed because pythonPackages.pybind11 for the appropriate version of Python should be used"; # Added 2021-05-14 - pybitmessage = throw "pybitmessage was removed from nixpkgs as it is stuck on python2."; # Added 2022-01-01 + pybitmessage = throw "pybitmessage was removed from nixpkgs as it is stuck on python2"; # Added 2022-01-01 pygmentex = texlive.bin.pygmentex; # Added 2019-12-15 - pyload = throw "pyload has been removed from nixpkgs, as it was unmaintained."; # Added 2021-03-21 - pynagsystemd = throw "pynagsystemd was removed as it was unmaintained and incompatible with recent systemd versions. Instead use its fork check_systemd."; # Added 2020-10-24 + pyload = throw "pyload has been removed from nixpkgs, as it was unmaintained"; # Added 2021-03-21 + pynagsystemd = throw "pynagsystemd was removed as it was unmaintained and incompatible with recent systemd versions. Instead use its fork check_systemd"; # Added 2020-10-24 pyo3-pack = maturin; - pyrex = throw "pyrex has been removed from nixpkgs as the project is still stuck on python2."; # Added 2022-01-12 - pyrex095 = throw "pyrex has been removed from nixpkgs as the project is still stuck on python2."; # Added 2022-01-12 - pyrex096 = throw "pyrex has been removed from nixpkgs as the project is still stuck on python2."; # Added 2022-01-12 - pyrit = throw "pyrit has been removed from nixpkgs as the project is still stuck on python2."; # Added 2022-01-01 + pyrex = throw "pyrex has been removed from nixpkgs as the project is still stuck on python2"; # Added 2022-01-12 + pyrex095 = throw "pyrex has been removed from nixpkgs as the project is still stuck on python2"; # Added 2022-01-12 + pyrex096 = throw "pyrex has been removed from nixpkgs as the project is still stuck on python2"; # Added 2022-01-12 + pyrit = throw "pyrit has been removed from nixpkgs as the project is still stuck on python2"; # Added 2022-01-01 python = python2; # Added 2022-01-11 python-swiftclient = swiftclient; # Added 2021-09-09 - python2nix = throw "python2nix has been removed as it is outdated. Use e.g. nixpkgs-pytools instead."; # Added 2021-03-08 + python2nix = throw "python2nix has been removed as it is outdated. Use e.g. nixpkgs-pytools instead"; # Added 2021-03-08 pythonFull = python2Full; # Added 2022-01-11 pythonPackages = python.pkgs; # Added 2022-01-11 @@ -1013,8 +1015,8 @@ mapAliases ({ quagga = throw "quagga is no longer maintained upstream"; # Added 2021-04-22 quake3game = throw "'quake3game' has been renamed to/replaced by 'ioquake3'"; # Converted to throw 2022-02-22 quaternion-git = throw "quaternion-git has been removed in favor of the stable version 'quaternion'"; # Added 2020-04-09 - quilter = throw "quilter has been removed from nixpkgs, as it was unmaintained."; # Added 2021-08-03 - qvim = throw "qvim has been removed."; # Added 2020-08-31 + quilter = throw "quilter has been removed from nixpkgs, as it was unmaintained"; # Added 2021-08-03 + qvim = throw "qvim has been removed"; # Added 2020-08-31 qweechat = throw "qweechat has been removed because it was broken"; # Added 2021-03-08 qwt6 = throw "'qwt6' has been renamed to/replaced by 'libsForQt5.qwt'"; # Converted to throw 2022-02-22 @@ -1022,8 +1024,8 @@ mapAliases ({ radare2-cutter = cutter; # Added 2021-03-30 raspberrypi-tools = throw "raspberrypi-tools has been removed in favor of identical 'libraspberrypi'"; # Added 2020-12-24 - rawdog = throw "rawdog has been removed from nixpkgs as it still requires python2."; # Added 2022-01-01 - rdf4store = throw "rdf4store has been removed from nixpkgs."; # Added 2019-12-21 + rawdog = throw "rawdog has been removed from nixpkgs as it still requires python2"; # Added 2022-01-01 + rdf4store = throw "rdf4store has been removed from nixpkgs"; # Added 2019-12-21 rdiff_backup = throw "'rdiff_backup' has been renamed to/replaced by 'rdiff-backup'"; # Converted to throw 2022-02-22 rdmd = throw "'rdmd' has been renamed to/replaced by 'dtools'"; # Converted to throw 2022-02-22 readline5 = throw "readline-5 is no longer supported in nixpkgs, please use 'readline' for main supported version"; # Added 2022-02-20 @@ -1032,7 +1034,7 @@ mapAliases ({ recordmydesktop = throw "recordmydesktop has been removed from nixpkgs, as it's unmaintained and uses deprecated libraries"; # Added 2019-12-10 redkite = throw "redkite was archived by upstream"; # Added 2021-04-12 redshift-wlr = throw "redshift-wlr has been replaced by gammastep"; # Added 2021-12-25 - renpy = throw "renpy has been removed from nixpkgs, it was unmaintained and the latest packaged version required python2."; # Added 2022-01-12 + renpy = throw "renpy has been removed from nixpkgs, it was unmaintained and the latest packaged version required python2"; # Added 2022-01-12 residualvm = throw "residualvm was merged to scummvm code in 2018-06-15; consider using scummvm"; # Added 2021-11-27 retroArchCores = throw "retroArchCores has been removed. Please use overrides instead, e.g.: `retroarch.override { cores = with libretro; [ ... ]; }`"; # Added 2021-11-19 retroshare06 = retroshare; @@ -1043,6 +1045,7 @@ mapAliases ({ rkt = throw "rkt was archived by upstream"; # Added 2020-05-16 rng_tools = throw "'rng_tools' has been renamed to/replaced by 'rng-tools'"; # Converted to throw 2022-02-22 robomongo = throw "'robomongo' has been renamed to/replaced by 'robo3t'"; # Converted to throw 2022-02-22 + rockbox_utility = rockbox-utility; # Added 2022-03-17 rocm-runtime-ext = throw "rocm-runtime-ext has been removed, since its functionality was added to rocm-runtime"; #added 2020-08-21 rpiboot-unstable = rpiboot; # Added 2021-07-30 rssglx = throw "'rssglx' has been renamed to/replaced by 'rss-glx'"; # Converted to throw 2022-02-22 @@ -1085,14 +1088,14 @@ mapAliases ({ sepolgen = throw "sepolgen was merged into selinux-python"; # Added 2021-11-11 shared_mime_info = throw "'shared_mime_info' has been renamed to/replaced by 'shared-mime-info'"; # Converted to throw 2022-02-22 shellinabox = throw "shellinabox has been removed from nixpkgs, as it was unmaintained upstream"; # Added 2021-12-15 - sickbeard = throw "sickbeard has been removed from nixpkgs, as it was unmaintained."; # Added 2022-01-01 - sickrage = throw "sickbeard has been removed from nixpkgs, as it was unmaintained."; # Added 2022-01-01 + sickbeard = throw "sickbeard has been removed from nixpkgs, as it was unmaintained"; # Added 2022-01-01 + sickrage = throw "sickbeard has been removed from nixpkgs, as it was unmaintained"; # Added 2022-01-01 sigurlx = throw "sigurlx has been removed (upstream is gone)"; # Added 2022-01-24 skrooge2 = throw "'skrooge2' has been renamed to/replaced by 'skrooge'"; # Converted to throw 2022-02-22 sky = throw "sky has been removed from nixpkgs (2020-09-16)"; skype = throw "'skype' has been renamed to/replaced by 'skypeforlinux'"; # Converted to throw 2022-02-22 - skype4pidgin = throw "skype4pidgin has been remove from nixpkgs, because it stopped working when classic Skype was retired."; # Added 2021-07-14 - skype_call_recorder = throw "skype_call_recorder has been removed from nixpkgs, because it stopped working when classic Skype was retired."; # Added 2020-10-31 + skype4pidgin = throw "skype4pidgin has been remove from nixpkgs, because it stopped working when classic Skype was retired"; # Added 2021-07-14 + skype_call_recorder = throw "skype_call_recorder has been removed from nixpkgs, because it stopped working when classic Skype was retired"; # Added 2020-10-31 slack-dark = slack; # Added 2020-03-27 slic3r-prusa3d = throw "'slic3r-prusa3d' has been renamed to/replaced by 'prusa-slicer'"; # Converted to throw 2022-02-22 slim = throw "slim has been removed. Please use a different display-manager"; # Added 2019-11-11 @@ -1101,7 +1104,7 @@ mapAliases ({ slurm-llnl = slurm; # renamed July 2017 slurm-llnl-full = slurm-full; # renamed July 2017 smbclient = throw "'smbclient' has been renamed to/replaced by 'samba'"; # Converted to throw 2022-02-22 - smugline = throw "smugline has been removed from nixpkgs, as it's unmaintained and depends on deprecated libraries."; # Added 2020-11-04 + smugline = throw "smugline has been removed from nixpkgs, as it's unmaintained and depends on deprecated libraries"; # Added 2020-11-04 solr_8 = solr; # Added 2021-01-30 # Added 2020-02-10 @@ -1132,11 +1135,11 @@ mapAliases ({ speedtest_cli = throw "'speedtest_cli' has been renamed to/replaced by 'speedtest-cli'"; # Converted to throw 2022-02-22 spice_gtk = throw "'spice_gtk' has been renamed to/replaced by 'spice-gtk'"; # Converted to throw 2022-02-22 spice_protocol = throw "'spice_protocol' has been renamed to/replaced by 'spice-protocol'"; # Converted to throw 2022-02-22 - spidermonkey_1_8_5 = throw "spidermonkey_1_8_5 has been removed, because it is based on Firefox 4.0 from 2011."; # added 2021-05-03 - spidermonkey_38 = throw "spidermonkey_38 has been removed. Please use spidermonkey_78 instead."; # Added 2021-03-21 - spidermonkey_52 = throw "spidermonkey_52 has been removed. Please use spidermonkey_78 instead."; # Added 2019-10-16 - spidermonkey_60 = throw "spidermonkey_60 has been removed. Please use spidermonkey_78 instead."; # Added 2021-03-21 - spidermonkey_68 = throw "spidermonkey_68 has been removed. Please use spidermonkey_91 instead."; # added 2022-01-04 + spidermonkey_1_8_5 = throw "spidermonkey_1_8_5 has been removed, because it is based on Firefox 4.0 from 2011"; # added 2021-05-03 + spidermonkey_38 = throw "spidermonkey_38 has been removed. Please use spidermonkey_78 instead"; # Added 2021-03-21 + spidermonkey_52 = throw "spidermonkey_52 has been removed. Please use spidermonkey_78 instead"; # Added 2019-10-16 + spidermonkey_60 = throw "spidermonkey_60 has been removed. Please use spidermonkey_78 instead"; # Added 2021-03-21 + spidermonkey_68 = throw "spidermonkey_68 has been removed. Please use spidermonkey_91 instead"; # added 2022-01-04 # spidermonkey is not ABI upwards-compatible, so only allow this for nix-shell spidermonkey = spidermonkey_78; # Added 2020-10-09 spring-boot = spring-boot-cli; # added 2020-04-24 @@ -1150,9 +1153,9 @@ mapAliases ({ subversion19 = throw "subversion19 has been removed as it has reached its end of life"; # Added 2021-03-31 sundials_3 = throw "sundials_3 was removed in 2020-02. outdated and no longer needed"; surf-webkit2 = throw "'surf-webkit2' has been renamed to/replaced by 'surf'"; # Converted to throw 2022-02-22 - svgcleaner = throw "svgcleaner has been removed."; # Added 2021-11-17 - swec = throw "swec has been removed; broken and abandoned upstream."; # Added 2021-10-14 - swfdec = throw "swfdec has been removed as broken and unmaintained."; # Added 2020-08-23 + svgcleaner = throw "svgcleaner has been removed"; # Added 2021-11-17 + swec = throw "swec has been removed; broken and abandoned upstream"; # Added 2021-10-14 + swfdec = throw "swfdec has been removed as broken and unmaintained"; # Added 2020-08-23 swtpm-tpm2 = swtpm; # Added 2021-02-26 syncthing-cli = syncthing; # Added 2021-04-06 synology-drive = throw "synology-drive has been superseded by synology-drive-client"; # Added 2021-11-26 @@ -1165,8 +1168,8 @@ mapAliases ({ tahoelafs = throw "'tahoelafs' has been renamed to/replaced by 'tahoe-lafs'"; # Converted to throw 2022-02-22 tangogps = foxtrotgps; # Added 2020-01-26 - tdm = throw "tdm has been removed because nobody can figure out how to fix OpenAL integration. Use precompiled binary and `steam-run` instead."; - telepathy-qt = throw "telepathy-qt no longer supports Qt 4. Please use libsForQt5.telepathy instead."; # Added 2020-07-02 + tdm = throw "tdm has been removed because nobody can figure out how to fix OpenAL integration. Use precompiled binary and `steam-run` instead"; + telepathy-qt = throw "telepathy-qt no longer supports Qt 4. Please use libsForQt5.telepathy instead"; # Added 2020-07-02 telepathy_farstream = throw "'telepathy_farstream' has been renamed to/replaced by 'telepathy-farstream'"; # Converted to throw 2022-02-22 telepathy_gabble = throw "'telepathy_gabble' has been renamed to/replaced by 'telepathy-gabble'"; # Converted to throw 2022-02-22 telepathy_glib = throw "'telepathy_glib' has been renamed to/replaced by 'telepathy-glib'"; # Converted to throw 2022-02-22 @@ -1191,17 +1194,17 @@ mapAliases ({ tex-gyre-schola-math = throw "'tex-gyre-schola-math' has been renamed to/replaced by 'tex-gyre-math.schola'"; # Converted to throw 2022-02-22 tex-gyre-termes-math = throw "'tex-gyre-termes-math' has been renamed to/replaced by 'tex-gyre-math.termes'"; # Converted to throw 2022-02-22 tftp_hpa = throw "'tftp_hpa' has been renamed to/replaced by 'tftp-hpa'"; # Converted to throw 2022-02-22 - thunderbird-68 = throw "Thunderbird 68 reached end of life with its final release 68.12.0 on 2020-08-25."; + thunderbird-68 = throw "Thunderbird 68 reached end of life with its final release 68.12.0 on 2020-08-25"; thunderbird-bin-68 = thunderbird-68; timescale-prometheus = promscale; # Added 2020-09-29 timetable = throw "timetable has been removed, as the upstream project has been abandoned"; # Added 2021-09-05 tkcvs = tkrev; # Added 2022-03-07 togglesg-download = throw "togglesg-download was removed 2021-04-30 as it's unmaintained"; # Added 2021-04-30 - tomboy = throw "tomboy is not actively developed anymore and was removed."; # Added 2022-01-27 - tomcat7 = throw "tomcat7 has been removed from nixpkgs as it has reached end of life."; # Added 2021-06-16 - tomcat8 = throw "tomcat8 has been removed from nixpkgs as it has reached end of life."; # Added 2021-06-16 - tomcat85 = throw "tomcat85 has been removed from nixpkgs as it has reached end of life."; # Added 2020-03-11 - tor-arm = throw "tor-arm has been removed from nixpkgs as the upstream project has been abandoned."; # Added 2022-01-01 + tomboy = throw "tomboy is not actively developed anymore and was removed"; # Added 2022-01-27 + tomcat7 = throw "tomcat7 has been removed from nixpkgs as it has reached end of life"; # Added 2021-06-16 + tomcat8 = throw "tomcat8 has been removed from nixpkgs as it has reached end of life"; # Added 2021-06-16 + tomcat85 = throw "tomcat85 has been removed from nixpkgs as it has reached end of life"; # Added 2020-03-11 + tor-arm = throw "tor-arm has been removed from nixpkgs as the upstream project has been abandoned"; # Added 2022-01-01 torbrowser = throw "'torbrowser' has been renamed to/replaced by 'tor-browser-bundle-bin'"; # Converted to throw 2022-02-22 torch = throw "torch has been removed, as the upstream project has been abandoned"; # Added 2020-03-28 torch-hdf5 = throw "torch-hdf5 has been removed, as the upstream project has been abandoned"; # Added 2020-03-28 @@ -1212,21 +1215,21 @@ mapAliases ({ transmission-remote-cli = "transmission-remote-cli has been removed, as the upstream project has been abandoned. Please use tremc instead"; # Added 2020-10-14 transmission_gtk = throw "'transmission_gtk' has been renamed to/replaced by 'transmission-gtk'"; # Converted to throw 2022-02-22 transmission_remote_gtk = throw "'transmission_remote_gtk' has been renamed to/replaced by 'transmission-remote-gtk'"; # Converted to throw 2022-02-22 - transporter = throw "transporter has been removed. It was archived upstream, so it's considered abandoned."; - trebleshot = throw "trebleshot has been removed. It was archived upstream, so it's considered abandoned."; - trilium = throw "trilium has been removed. Please use trilium-desktop instead."; # Added 2020-04-29 + transporter = throw "transporter has been removed. It was archived upstream, so it's considered abandoned"; + trebleshot = throw "trebleshot has been removed. It was archived upstream, so it's considered abandoned"; + trilium = throw "trilium has been removed. Please use trilium-desktop instead"; # Added 2020-04-29 truecrypt = throw "'truecrypt' has been renamed to/replaced by 'veracrypt'"; # Converted to throw 2022-02-22 tshark = throw "'tshark' has been renamed to/replaced by 'wireshark-cli'"; # Converted to throw 2022-02-22 tuijam = throw "tuijam has been removed because Google Play Music was discontinued"; # Added 2021-03-07 turbo-geth = throw "turbo-geth has been renamed to erigon"; # Added 2021-08-08 - typora = throw "Newer versions of typora use anti-user encryption and refuse to start. As such it has been removed."; # Added 2021-09-11 + typora = throw "Newer versions of typora use anti-user encryption and refuse to start. As such it has been removed"; # Added 2021-09-11 ### U ### uberwriter = apostrophe; # Added 2020-04-23 ubootBeagleboneBlack = ubootAmx335xEVM; # Added 2020-01-21 ucsFonts = throw "'ucsFonts' has been renamed to/replaced by 'ucs-fonts'"; # Converted to throw 2022-02-22 - ufraw = throw "ufraw is unmaintained and has been removed from nixpkgs. Its successor, nufraw, doesn't seem to be stable enough. Consider using Darktable for now."; # Added 2020-01-11 + ufraw = throw "ufraw is unmaintained and has been removed from nixpkgs. Its successor, nufraw, doesn't seem to be stable enough. Consider using Darktable for now"; # Added 2020-01-11 ultrastardx-beta = throw "'ultrastardx-beta' has been renamed to/replaced by 'ultrastardx'"; # Converted to throw 2022-02-22 unicorn-emu = unicorn; # Added 2020-10-29 unifiStable = unifi6; # Added 2020-12-28 @@ -1250,13 +1253,13 @@ mapAliases ({ v8_3_16_14 = throw "v8_3_16_14 was removed in 2019-11-01: no longer referenced by other packages"; vamp = { vampSDK = vamp-plugin-sdk; }; # Added 2020-03-26 vapor = throw "vapor was removed because it was unmaintained and upstream service no longer exists"; - varnish62 = throw "varnish62 was removed from nixpkgs, because it is unmaintained upstream. Please switch to a different release."; # Added 2021-07-26 - varnish63 = throw "varnish63 was removed from nixpkgs, because it is unmaintained upstream. Please switch to a different release."; # Added 2021-07-26 - varnish65 = throw "varnish65 was removed from nixpkgs, because it is unmaintained upstream. Please switch to a different release."; # Added 2021-09-15 + varnish62 = throw "varnish62 was removed from nixpkgs, because it is unmaintained upstream. Please switch to a different release"; # Added 2021-07-26 + varnish63 = throw "varnish63 was removed from nixpkgs, because it is unmaintained upstream. Please switch to a different release"; # Added 2021-07-26 + varnish65 = throw "varnish65 was removed from nixpkgs, because it is unmaintained upstream. Please switch to a different release"; # Added 2021-09-15 vdirsyncerStable = vdirsyncer; # Added 2020-11-08, see https://github.com/NixOS/nixpkgs/issues/103026#issuecomment-723428168 venus = throw "venus has been removed from nixpkgs, as it's unmaintained"; # Added 2021-02-05 vimbWrapper = throw "'vimbWrapper' has been renamed to/replaced by 'vimb'"; # Converted to throw 2022-02-22 - vimprobable2 = throw "vimprobable2 has been removed from nixpkgs. It relied on webkitgtk24x that has been removed."; # Added 2019-12-05 + vimprobable2 = throw "vimprobable2 has been removed from nixpkgs. It relied on webkitgtk24x that has been removed"; # Added 2019-12-05 vimprobable2-unwrapped = vimprobable2; # Added 2019-12-05 virtinst = throw "virtinst has been removed, as it's included in virt-manager"; # Added 2021-07-21 virtuoso = throw "virtuoso has been removed, because it was unmaintained in nixpkgs"; # added 2021-12-15 @@ -1264,28 +1267,28 @@ mapAliases ({ virtmanager-qt = virt-manager-qt; # Added 2019-10-29 virtviewer = throw "'virtviewer' has been renamed to/replaced by 'virt-viewer'"; # Converted to throw 2022-02-22 vorbisTools = throw "'vorbisTools' has been renamed to/replaced by 'vorbis-tools'"; # Converted to throw 2022-02-22 - vtun = throw "vtune has been removed as it's unmaintained upstream."; # Added 2021-10-29 + vtun = throw "vtune has been removed as it's unmaintained upstream"; # Added 2021-10-29 ### W ### way-cooler = throw "way-cooler is abandoned by its author: https://way-cooler.org/blog/2020/01/09/way-cooler-post-mortem.html"; # Added 2020-01-13 webkit = throw "'webkit' has been renamed to/replaced by 'webkitgtk'"; # Converted to throw 2022-02-22 - webkitgtk24x-gtk2 = throw "webkitgtk24x-gtk2 has been removed because it's insecure. Please use webkitgtk."; # Added 2019-12-05 - webkitgtk24x-gtk3 = throw "webkitgtk24x-gtk3 has been removed because it's insecure. Please use webkitgtk."; # Added 2019-12-05 + webkitgtk24x-gtk2 = throw "webkitgtk24x-gtk2 has been removed because it's insecure. Please use webkitgtk"; # Added 2019-12-05 + webkitgtk24x-gtk3 = throw "webkitgtk24x-gtk3 has been removed because it's insecure. Please use webkitgtk"; # Added 2019-12-05 weechat-matrix-bridge = throw "'weechat-matrix-bridge' has been renamed to/replaced by 'weechatScripts.weechat-matrix-bridge'"; # Converted to throw 2022-02-22 - whirlpool-gui = throw "whirlpool-gui has been removed as it depended on an insecure version of Electron."; # added 2022-02-08 - wicd = throw "wicd has been removed as it is abandoned."; # Added 2021-09-11 + whirlpool-gui = throw "whirlpool-gui has been removed as it depended on an insecure version of Electron"; # added 2022-02-08 + wicd = throw "wicd has been removed as it is abandoned"; # Added 2021-09-11 wineFull = throw "'wineFull' has been renamed to/replaced by 'winePackages.full'"; # Converted to throw 2022-02-22 wineMinimal = throw "'wineMinimal' has been renamed to/replaced by 'winePackages.minimal'"; # Converted to throw 2022-02-22 wineStable = throw "'wineStable' has been renamed to/replaced by 'winePackages.stable'"; # Converted to throw 2022-02-22 wineStaging = throw "'wineStaging' has been renamed to/replaced by 'wine-staging'"; # Converted to throw 2022-02-22 wineUnstable = throw "'wineUnstable' has been renamed to/replaced by 'winePackages.unstable'"; # Converted to throw 2022-02-22 wineWayland = wine-wayland; - winswitch = throw "winswitch has been removed from nixpkgs."; # Added 2019-12-10 + winswitch = throw "winswitch has been removed from nixpkgs"; # Added 2019-12-10 winusb = throw "'winusb' has been renamed to/replaced by 'woeusb'"; # Converted to throw 2022-02-22 wireguard = throw "'wireguard' has been renamed to/replaced by 'wireguard-tools'"; # Converted to throw 2022-02-22 - wireshark-gtk = throw "wireshark-gtk is not supported anymore. Use wireshark-qt or wireshark-cli instead."; # Added 2019-11-18 - wxmupen64plus = throw "wxmupen64plus was removed because the upstream disappeared."; # Added 2022-01-31 + wireshark-gtk = throw "wireshark-gtk is not supported anymore. Use wireshark-qt or wireshark-cli instead"; # Added 2019-11-18 + wxmupen64plus = throw "wxmupen64plus was removed because the upstream disappeared"; # Added 2022-01-31 ### X ### @@ -1309,7 +1312,7 @@ mapAliases ({ xf86_input_mtrack has been removed from nixpkgs as it is broken and unmaintained. Working alternatives are libinput and synaptics. ''; - xf86_input_multitouch = throw "xf86_input_multitouch has been removed from nixpkgs."; # Added 2020-01-20 + xf86_input_multitouch = throw "xf86_input_multitouch has been removed from nixpkgs"; # Added 2020-01-20 xlibs = throw "'xlibs' has been renamed to/replaced by 'xorg'"; # Converted to throw 2022-02-22 xpraGtk3 = throw "'xpraGtk3' has been renamed to/replaced by 'xpra'"; # Converted to throw 2022-02-22 xv = xxv; # Added 2020-02-22 @@ -1321,14 +1324,14 @@ mapAliases ({ yarssr = throw "yarssr has been removed as part of the python2 deprecation"; # Added 2022-01-15 youtubeDL = throw "'youtubeDL' has been renamed to/replaced by 'youtube-dl'"; # Converted to throw 2022-02-22 ytop = throw "ytop has been abandoned by upstream. Consider switching to bottom instead"; - yubikey-neo-manager = throw "yubikey-neo-manager has been removed because it was broken. Use yubikey-manager-qt instead."; # Added 2021-03-08 + yubikey-neo-manager = throw "yubikey-neo-manager has been removed because it was broken. Use yubikey-manager-qt instead"; # Added 2021-03-08 yuzu = yuzu-mainline; # Added 2021-01-25 ### Z ### zabbix30 = throw "Zabbix 3.0.x is end of life, see https://www.zabbix.com/documentation/5.0/manual/installation/upgrade/sources for a direct upgrade path to 5.0.x"; # Added 2021-04-07 zdfmediathk = throw "'zdfmediathk' has been renamed to/replaced by 'mediathekview'"; # Converted to throw 2022-02-22 - zimreader = throw "zimreader has been removed from nixpkgs as it has been replaced by kiwix-serve and stopped working with modern zimlib versions."; # Added 2021-03-28 + zimreader = throw "zimreader has been removed from nixpkgs as it has been replaced by kiwix-serve and stopped working with modern zimlib versions"; # Added 2021-03-28 # TODO(ekleog): add ‘wasm’ alias to ‘ocamlPackages.wasm’ after 19.03 # branch-off @@ -1353,17 +1356,17 @@ mapAliases ({ zeroc_ice = pkgs.zeroc-ice; # Added 2020-06-22 - zeromq3 = throw "zeromq3 has been deprecated by zeromq4."; + zeromq3 = throw "zeromq3 has been deprecated by zeromq4"; jzmq = throw "jzmq has been removed from nixpkgs, as it was unmaintained"; avian = throw '' The package doesn't compile anymore on NixOS and both development & maintenance is abandoned by upstream. ''; # Cleanup before 21.11, Added 2021-05-07 - ant-dracula-theme = throw "ant-dracula-theme is now dracula-theme, and theme name is Dracula instead of Ant-Dracula."; + ant-dracula-theme = throw "ant-dracula-theme is now dracula-theme, and theme name is Dracula instead of Ant-Dracula"; dina-font-pcf = dina-font; # Added 2020-02-09 - dnscrypt-proxy = throw "dnscrypt-proxy has been removed. Please use dnscrypt-proxy2."; # Added 2020-02-02 - gcc-snapshot = throw "gcc-snapshot: Marked as broken for >2 years, additionally this 'snapshot' pointed to a fairly old one from gcc7."; + dnscrypt-proxy = throw "dnscrypt-proxy has been removed. Please use dnscrypt-proxy2"; # Added 2020-02-02 + gcc-snapshot = throw "gcc-snapshot: Marked as broken for >2 years, additionally this 'snapshot' pointed to a fairly old one from gcc7"; gnatsd = nats-server; # Added 2019-10-28 obs-gstreamer = throw '' @@ -1393,16 +1396,16 @@ mapAliases ({ Its new location is obs-studio-plugins.wlrobs. ''; # Added 2021-06-01 - oraclejdk8psu = throw "The *psu versions of oraclejdk are no longer provided by upstream."; # Cleanup before 20.09 + oraclejdk8psu = throw "The *psu versions of oraclejdk are no longer provided by upstream"; # Cleanup before 20.09 oraclejre8psu = oraclejdk8psu; # Cleanup before 20.09 oraclejdk8psu_distro = oraclejdk8psu; # Cleanup before 20.09 posix_man_pages = man-pages-posix; # Added 2021-04-15 riot-desktop = throw "riot-desktop is now element-desktop!"; # Cleanup before 21.05 riot-web = throw "riot-web is now element-web"; # Cleanup before 21.05 sqldeveloper_18 = throw "sqldeveloper_18 is not maintained anymore!"; # Added 2020-02-04 - todolist = throw "todolist is now ultralist."; # Added 2020-12-27 - tor-browser-bundle = throw "tor-browser-bundle was removed because it was out of date and inadequately maintained. Please use tor-browser-bundle-bin instead."; # Added 2020-01-10 - tor-browser-unwrapped = throw "tor-browser-unwrapped was removed because it was out of date and inadequately maintained. Please use tor-browser-bundle-bin instead."; # Added 2020-01-10 + todolist = throw "todolist is now ultralist"; # Added 2020-12-27 + tor-browser-bundle = throw "tor-browser-bundle was removed because it was out of date and inadequately maintained. Please use tor-browser-bundle-bin instead"; # Added 2020-01-10 + tor-browser-unwrapped = throw "tor-browser-unwrapped was removed because it was out of date and inadequately maintained. Please use tor-browser-bundle-bin instead"; # Added 2020-01-10 ttyrec = ovh-ttyrec; # Added 2021-01-02 zplugin = zinit; # Added 2021-01-30 diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 38fa936a3b1..ca05863803d 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -147,9 +147,14 @@ with pkgs; autorestic = callPackage ../tools/backup/autorestic { }; - autoPatchelfHook = makeSetupHook - { name = "auto-patchelf-hook"; deps = [ bintools ]; } - ../build-support/setup-hooks/auto-patchelf.sh; + autoPatchelfHook = makeSetupHook { + name = "auto-patchelf-hook"; + deps = [ bintools ]; + substitutions = { + pythonInterpreter = "${python3.withPackages (ps: [ ps.pyelftools ])}/bin/python"; + autoPatchelfScript = ../build-support/setup-hooks/auto-patchelf.py; + }; + } ../build-support/setup-hooks/auto-patchelf.sh; appflowy = callPackage ../applications/office/appflowy { }; @@ -1084,6 +1089,8 @@ with pkgs; ksnip = libsForQt5.callPackage ../tools/misc/ksnip { }; + license-generator = callPackage ../tools/misc/license-generator { }; + linux-router = callPackage ../tools/networking/linux-router { }; linux-router-without-wifi = linux-router.override { useWifiDependencies = false; }; @@ -1114,6 +1121,8 @@ with pkgs; topicctl = callPackage ../tools/misc/topicctl { }; + ttchat = callPackage ../tools/misc/ttchat { }; + veikk-linux-driver-gui = libsForQt5.callPackage ../tools/misc/veikk-linux-driver-gui { }; ventoy-bin = callPackage ../tools/cd-dvd/ventoy-bin { }; @@ -2381,6 +2390,8 @@ with pkgs; borgmatic = callPackage ../tools/backup/borgmatic { }; + borg-sans-mono = callPackage ../data/fonts/borg-sans-mono { }; + boringtun = callPackage ../tools/networking/boringtun { }; bookstack = callPackage ../servers/web-apps/bookstack { }; @@ -3029,7 +3040,7 @@ with pkgs; element-desktop = callPackage ../applications/networking/instant-messengers/element/element-desktop.nix { inherit (darwin.apple_sdk.frameworks) Security AppKit CoreServices; - electron = electron_15; + electron = electron_17; }; element-desktop-wayland = writeScriptBin "element-desktop" '' #!/bin/sh @@ -3421,6 +3432,8 @@ with pkgs; inherit (darwin.apple_sdk.frameworks) Security; }; + lapce = callPackage ../applications/editors/lapce { }; + lcdproc = callPackage ../servers/monitoring/lcdproc { }; languagetool = callPackage ../tools/text/languagetool { }; @@ -3581,6 +3594,8 @@ with pkgs; mrkd = with python3Packages; toPythonApplication mrkd; + naproche = callPackage ../applications/science/logic/naproche { }; + nautilus-open-any-terminal = callPackage ../tools/misc/nautilus-open-any-terminal { }; n2n = callPackage ../tools/networking/n2n { }; @@ -3595,7 +3610,7 @@ with pkgs; nix-direnv = callPackage ../tools/misc/nix-direnv { }; - nix-output-monitor = haskell.lib.compose.justStaticExecutables (haskellPackages.nix-output-monitor); + nix-output-monitor = callPackage ../tools/nix/nix-output-monitor { }; nix-template = callPackage ../tools/package-management/nix-template { inherit (darwin.apple_sdk.frameworks) Security; @@ -4589,21 +4604,26 @@ with pkgs; cudnnPackages = callPackages ../development/libraries/science/math/cudnn { }; inherit (cudnnPackages) cudnn_7_4_cudatoolkit_10_0 - cudnn_7_6_cudatoolkit_10_2 - cudnn_7_6_cudatoolkit_10 + cudnn_7_6_cudatoolkit_10_0 + cudnn_7_6_cudatoolkit_10_1 + cudnn_8_1_cudatoolkit_10_2 cudnn_8_1_cudatoolkit_11_0 cudnn_8_1_cudatoolkit_11_1 cudnn_8_1_cudatoolkit_11_2 + cudnn_8_1_cudatoolkit_10 cudnn_8_1_cudatoolkit_11 + cudnn_8_3_cudatoolkit_10_2 cudnn_8_3_cudatoolkit_11_0 cudnn_8_3_cudatoolkit_11_1 cudnn_8_3_cudatoolkit_11_2 cudnn_8_3_cudatoolkit_11_3 cudnn_8_3_cudatoolkit_11_4 cudnn_8_3_cudatoolkit_11_5 + cudnn_8_3_cudatoolkit_10 cudnn_8_3_cudatoolkit_11; - cudnn = cudnn_7_6_cudatoolkit_10; + # TODO(samuela): This is old and should be upgraded to 8.3 at some point. + cudnn = cudnn_7_6_cudatoolkit_10_1; cutensorPackages = callPackages ../development/libraries/science/math/cutensor { }; inherit (cutensorPackages) @@ -5430,6 +5450,10 @@ with pkgs; ferm = callPackage ../tools/networking/ferm { }; + feroxbuster = callPackage ../tools/security/feroxbuster { + inherit (darwin.apple_sdk.frameworks) Security; + }; + ffsend = callPackage ../tools/misc/ffsend { inherit (darwin.apple_sdk.frameworks) CoreFoundation CoreServices Security AppKit; }; @@ -6755,6 +6779,8 @@ with pkgs; invidious = callPackage ../servers/invidious { # needs a specific version of lsquic lsquic = callPackage ../servers/invidious/lsquic.nix { }; + # normally video.js is downloaded at build time + videojs = callPackage ../servers/invidious/videojs.nix { }; }; invoice2data = callPackage ../tools/text/invoice2data { }; @@ -8190,6 +8216,8 @@ with pkgs; netpbm = callPackage ../tools/graphics/netpbm { }; + netproc = callPackage ../tools/networking/netproc { }; + netrw = callPackage ../tools/networking/netrw { }; netselect = callPackage ../tools/networking/netselect { }; @@ -8233,7 +8261,7 @@ with pkgs; grocy = callPackage ../servers/grocy { }; inherit (callPackage ../servers/nextcloud {}) - nextcloud20 nextcloud21 nextcloud22 nextcloud23; + nextcloud21 nextcloud22 nextcloud23; nextcloud-client = libsForQt5.callPackage ../applications/networking/nextcloud-client { }; @@ -8593,7 +8621,7 @@ with pkgs; openrgb = libsForQt5.callPackage ../applications/misc/openrgb { }; openrussian-cli = callPackage ../misc/openrussian-cli { - luaPackages = lua53Packages; + lua = lua5_3; }; opensbi = callPackage ../misc/opensbi { }; @@ -9189,6 +9217,8 @@ with pkgs; pydf = callPackage ../applications/misc/pydf { }; + pyinfra = with python3Packages; toPythonApplication pyinfra; + pympress = callPackage ../applications/office/pympress { }; pyspread = libsForQt5.callPackage ../applications/office/pyspread { }; @@ -9529,7 +9559,7 @@ with pkgs; roc-toolkit = callPackage ../development/libraries/audio/roc-toolkit { }; - rockbox_utility = libsForQt5.callPackage ../tools/misc/rockbox-utility { }; + rockbox-utility = libsForQt5.callPackage ../tools/misc/rockbox-utility { }; rosegarden = libsForQt514.callPackage ../applications/audio/rosegarden { }; @@ -9808,6 +9838,8 @@ with pkgs; shocco = callPackage ../tools/text/shocco { }; + shopify-cli = callPackage ../development/web/shopify-cli { }; + shopify-themekit = callPackage ../development/web/shopify-themekit { }; shorewall = callPackage ../tools/networking/shorewall { }; @@ -10526,6 +10558,8 @@ with pkgs; tokio-console = callPackage ../development/tools/tokio-console { }; + toml2json = callPackage ../development/tools/toml2json { }; + toml2nix = (callPackage ../tools/toml2nix { }).toml2nix { }; topgrade = callPackage ../tools/misc/topgrade { @@ -11321,6 +11355,8 @@ with pkgs; wkhtmltopdf = libsForQt514.callPackage ../tools/graphics/wkhtmltopdf { }; + wkhtmltopdf-bin = callPackage ../tools/graphics/wkhtmltopdf-bin { }; + wml = callPackage ../development/web/wml { }; wmc-mpris = callPackage ../applications/misc/web-media-controller { }; @@ -11541,6 +11577,8 @@ with pkgs; zimwriterfs = callPackage ../tools/text/zimwriterfs { }; + zld = callPackage ../development/tools/zld { }; + par = callPackage ../tools/text/par { }; zip = callPackage ../tools/archivers/zip { }; @@ -13323,6 +13361,7 @@ with pkgs; cargo-msrv = callPackage ../development/tools/rust/cargo-msrv { inherit (darwin.apple_sdk.frameworks) Security; }; + cargo-nextest = callPackage ../development/tools/rust/cargo-nextest { }; cargo-play = callPackage ../development/tools/rust/cargo-play { }; cargo-raze = callPackage ../development/tools/rust/cargo-raze { inherit (darwin.apple_sdk.frameworks) Security; @@ -14058,8 +14097,18 @@ with pkgs; pipenv = callPackage ../development/tools/pipenv {}; - pipewire = callPackage ../development/libraries/pipewire {}; + pipewire = callPackage ../development/libraries/pipewire { + # ffmpeg depends on SDL2 which depends on pipewire by default. + # Break the cycle by disabling pipewire support in our ffmpeg. + ffmpeg = ffmpeg.override { + SDL2 = SDL2.override { + pipewireSupport = false; + }; + }; + }; + pipewire-media-session = callPackage ../development/libraries/pipewire/media-session.nix {}; + pipewire_0_2 = callPackage ../development/libraries/pipewire/0.2.nix {}; wireplumber = callPackage ../development/libraries/pipewire/wireplumber.nix {}; @@ -14143,8 +14192,11 @@ with pkgs; self = pkgsi686Linux.callPackage ../development/interpreters/self { }; inherit (callPackages ../applications/networking/cluster/spark { }) - spark3 - spark2; + spark_3_2 + spark_3_1 + spark_2_4; + spark3 = spark_3_2; + spark2 = spark_2_4; spark = spark3; sparkleshare = callPackage ../applications/version-management/sparkleshare { }; @@ -14707,6 +14759,8 @@ with pkgs; cloudcompare = libsForQt5.callPackage ../applications/graphics/cloudcompare {}; + cloudflare-warp = callPackage ../tools/networking/cloudflare-warp { }; + cloudfoundry-cli = callPackage ../applications/networking/cluster/cloudfoundry-cli { }; clpm = callPackage ../development/tools/clpm {}; @@ -16351,8 +16405,6 @@ with pkgs; classads = callPackage ../development/libraries/classads { }; - clearsilver = callPackage ../development/libraries/clearsilver { }; - clfft = callPackage ../development/libraries/clfft { }; clipp = callPackage ../development/libraries/clipp { }; @@ -17885,6 +17937,8 @@ with pkgs; libctemplate = callPackage ../development/libraries/libctemplate { }; + libctl = callPackage ../development/libraries/libctl { }; + libcotp = callPackage ../development/libraries/libcotp { }; libcouchbase = callPackage ../development/libraries/libcouchbase { }; @@ -19500,11 +19554,8 @@ with pkgs; openvdb = callPackage ../development/libraries/openvdb {}; inherit (callPackages ../development/libraries/libressl { }) - libressl_3_2 libressl_3_4; - # Please keep this pointed to the latest version. See also - # https://discourse.nixos.org/t/nixpkgs-policy-regarding-libraries-available-in-multiple-versions/7026/2 libressl = libressl_3_4; boringssl = callPackage ../development/libraries/boringssl { }; @@ -19548,6 +19599,8 @@ with pkgs; osinfo-db = callPackage ../data/misc/osinfo-db { }; osinfo-db-tools = callPackage ../tools/misc/osinfo-db-tools { }; + pacemaker = callPackage ../misc/logging/pacemaker { }; + p11-kit = callPackage ../development/libraries/p11-kit { }; paperkey = callPackage ../tools/security/paperkey { }; @@ -20631,41 +20684,27 @@ with pkgs; wxformbuilder = callPackage ../development/tools/wxformbuilder { }; wxGTK = wxGTK28; - wxGTK30 = wxGTK30-gtk2; - wxGTK31 = wxGTK31-gtk2; - wxGTK28 = callPackage ../development/libraries/wxwidgets/2.8 { }; + wxGTK28 = callPackage ../development/libraries/wxwidgets/wxGTK28.nix { }; - wxGTK29 = callPackage ../development/libraries/wxwidgets/2.9 { + wxGTK29 = callPackage ../development/libraries/wxwidgets/wxGTK29.nix { inherit (darwin.stubs) setfile; inherit (darwin.apple_sdk.frameworks) AGL Carbon Cocoa Kernel QuickTime; }; - wxGTK30-gtk2 = callPackage ../development/libraries/wxwidgets/3.0 { + wxGTK30 = callPackage ../development/libraries/wxwidgets/wxGTK30.nix { withGtk2 = true; inherit (darwin.stubs) setfile; inherit (darwin.apple_sdk.frameworks) AGL Carbon Cocoa Kernel QTKit; }; + wxGTK30-gtk2 = wxGTK30.override { withGtk2 = true; }; + wxGTK30-gtk3 = wxGTK30.override { withGtk2 = false; }; - wxGTK30-gtk3 = callPackage ../development/libraries/wxwidgets/3.0 { - withGtk2 = false; - inherit (darwin.stubs) setfile; - inherit (darwin.apple_sdk.frameworks) AGL Carbon Cocoa Kernel QTKit; - }; + wxmac = callPackage ../development/libraries/wxwidgets/wxmac30.nix { }; - wxGTK31-gtk2 = callPackage ../development/libraries/wxwidgets/3.1 { - withGtk2 = true; - inherit (darwin.stubs) setfile; - inherit (darwin.apple_sdk.frameworks) AGL Carbon Cocoa Kernel QTKit; - }; - - wxGTK31-gtk3 = callPackage ../development/libraries/wxwidgets/3.1 { - withGtk2 = false; - inherit (darwin.stubs) setfile; - inherit (darwin.apple_sdk.frameworks) AGL Carbon Cocoa Kernel QTKit; - }; - - wxmac = callPackage ../development/libraries/wxwidgets/3.0/mac.nix { }; + wxGTK31 = callPackage ../development/libraries/wxwidgets/wxGTK31.nix { }; + wxGTK31-gtk2 = wxGTK31.override { withGtk2 = true; }; + wxGTK31-gtk3 = wxGTK31.override { withGtk2 = false; }; wxSVG = callPackage ../development/libraries/wxSVG { wxGTK = wxGTK30-gtk3; @@ -22166,7 +22205,7 @@ with pkgs; unifi6 unifi7; - unifi = unifi6; + unifi = unifi7; unifi-video = callPackage ../servers/unifi-video { }; @@ -25109,7 +25148,6 @@ with pkgs; comical = callPackage ../applications/graphics/comical { }; containerd = callPackage ../applications/virtualization/containerd { }; - containerd_1_4 = callPackage ../applications/virtualization/containerd/1.4.nix { }; convchain = callPackage ../tools/graphics/convchain {}; @@ -25491,6 +25529,10 @@ with pkgs; fnott = callPackage ../applications/misc/fnott { }; + furnace = callPackage ../applications/audio/furnace { + inherit (darwin.apple_sdk.frameworks) Cocoa; + }; + gg-scm = callPackage ../applications/version-management/git-and-tools/gg { }; gigalixir = with python3Packages; toPythonApplication gigalixir; @@ -26897,6 +26939,8 @@ with pkgs; kapow = libsForQt5.callPackage ../applications/misc/kapow { }; + kchmviewer = libsForQt5.callPackage ../applications/misc/kchmviewer { }; + kappanhang = callPackage ../applications/radio/kappanhang { }; okteta = libsForQt5.callPackage ../applications/editors/okteta { }; @@ -26978,7 +27022,28 @@ with pkgs; kooha = callPackage ../applications/video/kooha { }; - kotatogram-desktop = libsForQt5.callPackage ../applications/networking/instant-messengers/telegram/kotatogram-desktop { }; + # Qt 5.15 is not default on mac, tdesktop requires 5.15 (and kotatogram subsequently) + kotatogram-desktop = libsForQt515.callPackage ../applications/networking/instant-messengers/telegram/kotatogram-desktop { + inherit (darwin.apple_sdk.frameworks) Cocoa CoreFoundation CoreServices CoreText CoreGraphics + CoreMedia OpenGL AudioUnit ApplicationServices Foundation AGL Security SystemConfiguration + Carbon AudioToolbox VideoToolbox VideoDecodeAcceleration AVFoundation CoreAudio CoreVideo + CoreMediaIO QuartzCore AppKit CoreWLAN WebKit IOKit GSS MediaPlayer IOSurface Metal MetalKit; + + # C++20 is required, darwin has Clang 7 by default, aarch64 has gcc 9 by default + stdenv = if stdenv.isDarwin + then llvmPackages_12.libcxxStdenv + else if stdenv.isAarch64 then gcc10Stdenv else stdenv; + + # tdesktop has random crashes when jemalloc is built with gcc. + # Apparently, it triggers some bug due to usage of gcc's builtin + # functions like __builtin_ffsl by jemalloc when it's built with gcc. + jemalloc = (jemalloc.override { stdenv = llvmPackages.stdenv; }).overrideAttrs(_: { + # no idea how to fix the tests :( + doCheck = false; + }); + + abseil-cpp = abseil-cpp_202111; + }; kpt = callPackage ../applications/networking/cluster/kpt { }; @@ -27333,6 +27398,8 @@ with pkgs; magic-wormhole = with python3Packages; toPythonApplication magic-wormhole; + magic-wormhole-rs = callPackage ../tools/networking/magic-wormhole-rs/default.nix { }; + magnetophonDSP = lib.recurseIntoAttrs { CharacterCompressor = callPackage ../applications/audio/magnetophonDSP/CharacterCompressor { }; CompBus = callPackage ../applications/audio/magnetophonDSP/CompBus { }; @@ -27690,6 +27757,7 @@ with pkgs; simple-mpv-webui = callPackage ../applications/video/mpv/scripts/simple-mpv-webui.nix {}; sponsorblock = callPackage ../applications/video/mpv/scripts/sponsorblock.nix {}; thumbnail = callPackage ../applications/video/mpv/scripts/thumbnail.nix { }; + vr-reversal = callPackage ../applications/video/mpv/scripts/vr-reversal.nix {}; youtube-quality = callPackage ../applications/video/mpv/scripts/youtube-quality.nix { }; cutter = callPackage ../applications/video/mpv/scripts/cutter.nix { }; }; @@ -28462,7 +28530,7 @@ with pkgs; protonvpn-cli = callPackage ../applications/networking/protonvpn-cli { }; - protonvpn-gui = callPackage ../applications/networking/protonvpn-gui { }; + protonvpn-gui = python3Packages.callPackage ../applications/networking/protonvpn-gui { }; ps2client = callPackage ../applications/networking/ps2client { }; @@ -32243,6 +32311,8 @@ with pkgs; blas = callPackage ../build-support/alternatives/blas { }; + blas-ilp64 = blas.override { isILP64 = true; }; + blas-reference = callPackage ../development/libraries/science/math/blas { }; bonmin = callPackage ../development/libraries/science/math/bonmin { }; @@ -32267,6 +32337,8 @@ with pkgs; lapack = callPackage ../build-support/alternatives/lapack { }; + lapack-ilp64 = lapack.override { isILP64 = true; }; + lapack-reference = callPackage ../development/libraries/science/math/liblapack { }; liblapack = lapack-reference; @@ -32608,6 +32680,8 @@ with pkgs; monosat = callPackage ../applications/science/logic/monosat {}; + nuXmv = callPackage ../applications/science/logic/nuXmv {}; + opensmt = callPackage ../applications/science/logic/opensmt { }; ott = callPackage ../applications/science/logic/ott { }; @@ -33717,7 +33791,9 @@ with pkgs; disnixos = callPackage ../tools/package-management/disnix/disnixos { }; - DisnixWebService = callPackage ../tools/package-management/disnix/DisnixWebService { }; + DisnixWebService = callPackage ../tools/package-management/disnix/DisnixWebService { + jdk = jdk8; + }; i3a = callPackage ../misc/i3a { }; @@ -34229,7 +34305,6 @@ with pkgs; wasm-pack = callPackage ../development/tools/wasm-pack { inherit (darwin.apple_sdk.frameworks) Security; - libressl = libressl_3_2; }; wavegain = callPackage ../applications/audio/wavegain { }; diff --git a/pkgs/top-level/python-aliases.nix b/pkgs/top-level/python-aliases.nix index 2ac1f83917a..4718d942d8e 100644 --- a/pkgs/top-level/python-aliases.nix +++ b/pkgs/top-level/python-aliases.nix @@ -85,6 +85,7 @@ mapAliases ({ pylibgen = throw "pylibgen is unmaintained upstreamed, and removed from nixpkgs"; # added 2020-06-20 pymssql = throw "pymssql has been abandoned upstream."; # added 2020-05-04 pysmart-smartx = pysmart; # added 2021-10-22 + pytest_6 = pytest; # added 2022-02-10 pytestcov = pytest-cov; # added 2021-01-04 pytest-pep8 = pytestpep8; # added 2021-01-04 pytestpep8 = throw "pytestpep8 was removed because it is abandoned and no longer compatible with pytest v6.0"; # added 2020-12-10 diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix index 25bab7f31af..a5d436ccd52 100644 --- a/pkgs/top-level/python-packages.nix +++ b/pkgs/top-level/python-packages.nix @@ -135,16 +135,6 @@ in { venvShellHook wheelUnpackHook; - # Not all packages are compatible with the latest pytest yet. - # We need to override the hook to select an older pytest, however, - # it should not override the version of pytest that is used for say - # Python 2. This is an ugly hack that is needed now because the hook - # propagates the package. - pytestCheckHook_6_1 = if isPy3k then - self.pytestCheckHook.override { pytest = self.pytest_6_1; } - else - self.pytestCheckHook; - # helpers # We use build packages because we are making a setup hook to be used as a @@ -254,6 +244,8 @@ in { aio-georss-gdacs = callPackage ../development/python-modules/aio-georss-gdacs { }; + aioairzone = callPackage ../development/python-modules/aioairzone { }; + aioambient = callPackage ../development/python-modules/aioambient { }; aioapns = callPackage ../development/python-modules/aioapns { }; @@ -852,6 +844,8 @@ in { azure-common = callPackage ../development/python-modules/azure-common { }; + azure-containerregistry = callPackage ../development/python-modules/azure-containerregistry { }; + azure-core = callPackage ../development/python-modules/azure-core { }; azure-cosmos = callPackage ../development/python-modules/azure-cosmos { }; @@ -2220,7 +2214,7 @@ in { distutils_extra = callPackage ../development/python-modules/distutils_extra { }; - django = self.django_2; + django = self.django_3; # Current LTS django_2 = callPackage ../development/python-modules/django/2.nix { }; @@ -2438,6 +2432,8 @@ in { docx2python = callPackage ../development/python-modules/docx2python { }; + docx2txt = callPackage ../development/python-modules/docx2txt { }; + dodgy = callPackage ../development/python-modules/dodgy { }; dogpile-cache = callPackage ../development/python-modules/dogpile-cache { }; @@ -3033,6 +3029,8 @@ in { inherit (pkgs) flatbuffers; }; + flatdict = callPackage ../development/python-modules/flatdict { }; + flatten-dict = callPackage ../development/python-modules/flatten-dict { }; flax = callPackage ../development/python-modules/flax { }; @@ -3603,7 +3601,9 @@ in { gruut = callPackage ../development/python-modules/gruut { }; - gruut-ipa = callPackage ../development/python-modules/gruut-ipa { }; + gruut-ipa = callPackage ../development/python-modules/gruut-ipa { + inherit (pkgs) espeak; + }; gsd = callPackage ../development/python-modules/gsd { }; @@ -4468,6 +4468,8 @@ in { keyrings-cryptfile = callPackage ../development/python-modules/keyrings-cryptfile { }; + keyrings-google-artifactregistry-auth = callPackage ../development/python-modules/keyrings-google-artifactregistry-auth { }; + keyrings-alt = callPackage ../development/python-modules/keyrings-alt { }; keystone-engine = callPackage ../development/python-modules/keystone-engine { }; @@ -5053,6 +5055,8 @@ in { mediafile = callPackage ../development/python-modules/mediafile { }; + meilisearch = callPackage ../development/python-modules/meilisearch { }; + meinheld = callPackage ../development/python-modules/meinheld { }; meld3 = callPackage ../development/python-modules/meld3 { }; @@ -7785,28 +7789,12 @@ in { pytesseract = callPackage ../development/python-modules/pytesseract { }; - pytest = self.pytest_6; - - pytest_6 = - callPackage ../development/python-modules/pytest { - # hypothesis tests require pytest that causes dependency cycle - hypothesis = self.hypothesis.override { - doCheck = false; - }; - }; - - pytest_6_1 = self.pytest_6.overridePythonAttrs (oldAttrs: rec { - version = "6.1.2"; - src = oldAttrs.src.override { - inherit version; - sha256 = "c0a7e94a8cdbc5422a51ccdad8e6f1024795939cc89159a0ae7f0b316ad3823e"; + pytest = callPackage ../development/python-modules/pytest { + # hypothesis tests require pytest that causes dependency cycle + hypothesis = self.hypothesis.override { + doCheck = false; }; - - postPatch = '' - substituteInPlace setup.cfg \ - --replace "pluggy>=0.12,<1.0" "pluggy>=0.12,<2.0" - ''; - }); + }; pytest-aio = callPackage ../development/python-modules/pytest-aio { }; @@ -8305,6 +8293,8 @@ in { pyeverlights = callPackage ../development/python-modules/pyeverlights { }; + pyinfra = callPackage ../development/python-modules/pyinfra { }; + pytibber = callPackage ../development/python-modules/pytibber { }; pytile = callPackage ../development/python-modules/pytile { }; diff --git a/pkgs/top-level/stage.nix b/pkgs/top-level/stage.nix index 9d34ddb3685..1945762c50d 100644 --- a/pkgs/top-level/stage.nix +++ b/pkgs/top-level/stage.nix @@ -64,6 +64,30 @@ } @args: let + # This is a function from parsed platforms (like + # stdenv.hostPlatform.parsed) to parsed platforms. + makeMuslParsedPlatform = parsed: + # The following line guarantees that the output of this function + # is a well-formed platform with no missing fields. It will be + # uncommented in a separate PR, in case it breaks the build. + #(x: lib.trivial.pipe x [ (x: builtins.removeAttrs x [ "_type" ]) lib.systems.parse.mkSystem ]) + (parsed // { + abi = { + gnu = lib.systems.parse.abis.musl; + gnueabi = lib.systems.parse.abis.musleabi; + gnueabihf = lib.systems.parse.abis.musleabihf; + gnuabin32 = lib.systems.parse.abis.muslabin32; + gnuabi64 = lib.systems.parse.abis.muslabi64; + # The following two entries ensure that this function is idempotent. + musleabi = lib.systems.parse.abis.musleabi; + musleabihf = lib.systems.parse.abis.musleabihf; + muslabin32 = lib.systems.parse.abis.muslabin32; + muslabi64 = lib.systems.parse.abis.muslabi64; + }.${parsed.abi.name} + or lib.systems.parse.abis.musl; + }); + + stdenvAdapters = self: super: let res = import ../stdenv/adapters.nix { @@ -188,14 +212,7 @@ let })] ++ overlays; ${if stdenv.hostPlatform == stdenv.buildPlatform then "localSystem" else "crossSystem"} = { - parsed = stdenv.hostPlatform.parsed // { - abi = { - gnu = lib.systems.parse.abis.musl; - gnueabi = lib.systems.parse.abis.musleabi; - gnueabihf = lib.systems.parse.abis.musleabihf; - }.${stdenv.hostPlatform.parsed.abi.name} - or lib.systems.parse.abis.musl; - }; + parsed = makeMuslParsedPlatform stdenv.hostPlatform.parsed; }; } else throw "Musl libc only supports Linux systems."; @@ -239,16 +256,7 @@ let } // lib.optionalAttrs stdenv.hostPlatform.isLinux { crossSystem = { isStatic = true; - parsed = stdenv.hostPlatform.parsed // { - abi = { - gnu = lib.systems.parse.abis.musl; - gnueabi = lib.systems.parse.abis.musleabi; - gnueabihf = lib.systems.parse.abis.musleabihf; - musleabi = lib.systems.parse.abis.musleabi; - musleabihf = lib.systems.parse.abis.musleabihf; - }.${stdenv.hostPlatform.parsed.abi.name} - or lib.systems.parse.abis.musl; - }; + parsed = makeMuslParsedPlatform stdenv.hostPlatform.parsed; } // lib.optionalAttrs (stdenv.hostPlatform.system == "powerpc64-linux") { gcc.abi = "elfv2"; }; |