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| author | mimadrid <mimadrid@ucm.es> | 2016-06-24 15:18:08 +0200 |
|---|---|---|
| committer | mimadrid <mimadrid@ucm.es> | 2016-06-24 21:08:17 +0200 |
| commit | d91d245f1607a44532e4237a997e9bf64ebca120 (patch) | |
| tree | f3a182c255a601bc42495af7527ef141309ceb74 /pkgs | |
| parent | 14feec44e4a31b4df7ce166e7d7dfef3c7f81e29 (diff) | |
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bcftools: init at 1.3.1
Diffstat (limited to 'pkgs')
| -rw-r--r-- | pkgs/applications/science/biology/bcftools/default.nix | 26 | ||||
| -rw-r--r-- | pkgs/top-level/all-packages.nix | 2 |
2 files changed, 28 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/bcftools/default.nix b/pkgs/applications/science/biology/bcftools/default.nix new file mode 100644 index 00000000000..d4e4ed5b954 --- /dev/null +++ b/pkgs/applications/science/biology/bcftools/default.nix @@ -0,0 +1,26 @@ +{ stdenv, fetchurl, zlib, htslib }: + +stdenv.mkDerivation rec { + name = "${pname}-${version}"; + pname = "bcftools"; + version = "1.3.1"; + + src = fetchurl { + url = "https://github.com/samtools/${pname}/releases/download/${version}/${name}.tar.bz2"; + sha256 = "095ry68vmz9q5s1scjsa698dhgyvgw5aicz24c19iwfbai07mhqj"; + }; + + buildInputs = [ zlib ]; + + preBuild = '' + makeFlagsArray=("HSTDIR=${htslib}" "prefix=$out") + ''; + + meta = with stdenv.lib; { + description = "Tools for manipulating BCF2/VCF/gVCF format, SNP and short indel sequence variants"; + license = licenses.mit; + homepage = http://www.htslib.org/; + platforms = platforms.unix; + maintainers = [ maintainers.mimadrid ]; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 79718fc79e5..11c0641558b 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -15883,6 +15883,8 @@ in stdenv = overrideCC stdenv gcc49; }; + bcftools = callPackage ../applications/science/biology/bcftools { }; + emboss = callPackage ../applications/science/biology/emboss { }; htslib = callPackage ../development/libraries/science/biology/htslib { }; |