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| author | Ben Darwin <bcdarwin@gmail.com> | 2020-04-27 15:04:43 -0400 |
|---|---|---|
| committer | Ben Darwin <bcdarwin@gmail.com> | 2020-05-05 00:08:04 -0400 |
| commit | 5caa76705bd839fb6733f64740dec95d7b2fefc5 (patch) | |
| tree | 6f3970658470d2fdf611d80ddd7be48193cbd219 /pkgs/development/libraries/science/biology | |
| parent | 6f1430a8021274aa4ec4c7b52c3457e37574c094 (diff) | |
| download | nixpkgs-5caa76705bd839fb6733f64740dec95d7b2fefc5.tar nixpkgs-5caa76705bd839fb6733f64740dec95d7b2fefc5.tar.gz nixpkgs-5caa76705bd839fb6733f64740dec95d7b2fefc5.tar.bz2 nixpkgs-5caa76705bd839fb6733f64740dec95d7b2fefc5.tar.lz nixpkgs-5caa76705bd839fb6733f64740dec95d7b2fefc5.tar.xz nixpkgs-5caa76705bd839fb6733f64740dec95d7b2fefc5.tar.zst nixpkgs-5caa76705bd839fb6733f64740dec95d7b2fefc5.zip | |
elastix: update for ITK 5.1.0
- fetch patches to build elastix 5.0 with ITK 5.1 - update 'platforms': builds on Darwin, fails on aarch64
Diffstat (limited to 'pkgs/development/libraries/science/biology')
| -rw-r--r-- | pkgs/development/libraries/science/biology/elastix/default.nix | 20 |
1 files changed, 17 insertions, 3 deletions
diff --git a/pkgs/development/libraries/science/biology/elastix/default.nix b/pkgs/development/libraries/science/biology/elastix/default.nix index e5565aae29b..4d98b12928f 100644 --- a/pkgs/development/libraries/science/biology/elastix/default.nix +++ b/pkgs/development/libraries/science/biology/elastix/default.nix @@ -1,4 +1,4 @@ -{ stdenv, fetchFromGitHub, cmake, itk, python3 }: +{ stdenv, fetchFromGitHub, fetchpatch, cmake, itk, python3 }: stdenv.mkDerivation rec { pname = "elastix"; @@ -11,10 +11,24 @@ stdenv.mkDerivation rec { sha256 = "1zrl7rz4lwsx88b2shnl985f3a97lmp4ksbd437h9y0hfjq8l0lj"; }; + patches = [ + (fetchpatch { + name = "itk-5.1-compat.patch"; + url = "https://github.com/SuperElastix/elastix/commit/402e9a26f22f805b8f2db00c00e59f75fa1783ad.patch"; + sha256 = "1il6gc1lgy78i0w6gkkppr61nh6g0yjspbfk19hcz20778m5jhz9"; + }) + (fetchpatch { + name = "fix-osx-build.patch"; + url = "https://github.com/SuperElastix/elastix/commit/52e1dc3928046f9fbb85d4b2ecd0d5175fa9695d.patch"; + sha256 = "1hf7kgx1jv497pf0x5wj79sy1wncxcvhrkix9w086lcr8zwxvn9q"; + }) + ]; + + nativeBuildInputs = [ cmake python3 ]; buildInputs = [ itk ]; - doCheck = true; + doCheck = !stdenv.isDarwin; # usual dynamic linker issues preCheck = " export LD_LIBRARY_PATH=$(pwd)/bin @@ -24,7 +38,7 @@ stdenv.mkDerivation rec { homepage = "http://elastix.isi.uu.nl/"; description = "Image registration toolkit based on ITK"; maintainers = with maintainers; [ bcdarwin ]; - platforms = platforms.linux; + platforms = platforms.x86_64; # libitkpng linker issues with ITK 5.1 license = licenses.asl20; }; } |