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| author | Justin Bedo <cu@cua0.org> | 2019-12-16 16:31:09 +1100 |
|---|---|---|
| committer | Jon <jonringer@users.noreply.github.com> | 2020-01-24 02:02:19 -0800 |
| commit | 7f142260d38e586fe1e182a650fa32e199a96370 (patch) | |
| tree | be0e4c47747e418213bfddb908547d583a2730b7 /pkgs/applications | |
| parent | d4119389bd7ec02e3a0bbd9b556b44d60f6a673e (diff) | |
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manta: init 1.6.0
Diffstat (limited to 'pkgs/applications')
| -rw-r--r-- | pkgs/applications/science/biology/manta/default.nix | 35 |
1 files changed, 35 insertions, 0 deletions
diff --git a/pkgs/applications/science/biology/manta/default.nix b/pkgs/applications/science/biology/manta/default.nix new file mode 100644 index 00000000000..f0f0575e055 --- /dev/null +++ b/pkgs/applications/science/biology/manta/default.nix @@ -0,0 +1,35 @@ +{ stdenv, fetchFromGitHub, cmake, zlib, python2 }: + +stdenv.mkDerivation rec { + pname = "manta"; + version = "1.6.0"; + + src = fetchFromGitHub { + owner = "Illumina"; + repo = "manta"; + rev = "v${version}"; + sha256 = "1711xkcw8rpw9xv3bbm7v1aryjz4r341rkq5255192dg38sgq7w2"; + }; + + nativeBuildInputs = [ cmake ]; + buildInputs = [ zlib python2 ]; + postFixup = '' + sed -i 's|/usr/bin/env python2|${python2.interpreter}|' $out/lib/python/makeRunScript.py + sed -i 's|/usr/bin/env python|${python2.interpreter}|' $out/lib/python/pyflow/pyflow.py + sed -i 's|/bin/bash|${stdenv.shell}|' $out/lib/python/pyflow/pyflowTaskWrapper.py + ''; + doInstallCheck = true; + installCheckPhase = '' + rm $out/lib/python/**/*.pyc + PYTHONPATH=$out/lib/python:$PYTHONPATH python -c 'import makeRunScript' + PYTHONPATH=$out/lib/python/pyflow:$PYTHONPATH python -c 'import pyflowTaskWrapper; import pyflow' + ''; + + meta = with stdenv.lib; { + description = "Structural variant caller"; + license = licenses.gpl3; + homepage = "https://github.com/Illumina/manta"; + maintainers = with maintainers; [ jbedo ]; + platforms = platforms.x86_64; + }; +} |