path: root/pkgs/development/r-modules/bioc-packages.nix

# This file is generated from generate-r-packages.R. DO NOT EDIT.
# Execute the following command to update the file.
#
# Rscript generate-r-packages.R bioc >new && mv new bioc-packages.nix

{ self, derive }: with self; {
ABAEnrichment = derive { name="ABAEnrichment"; version="0.99.6"; sha256="0a7lszpdqfj6ssflviiylazm62inm7m3i6gwz6xw6qxcb2n9bqr5"; depends=[gplots Rcpp]; };
ABSSeq = derive { name="ABSSeq"; version="1.5.1"; sha256="0x9w0n3i100pdampb7pfq4bdmpbbsdjj16s384aflkqs666jwrxi"; depends=[limma locfit]; };
ABarray = derive { name="ABarray"; version="1.37.0"; sha256="06pvn3nbi0gnj6inwyy1hy6r0m6axm4aqw36966va02vby4937ln"; depends=[Biobase multtest]; };
ACME = derive { name="ACME"; version="2.25.0"; sha256="1kni4wvp7dw1yy813dyq2329a0v8wgskq0wr2yvkpjiagg5j36km"; depends=[Biobase BiocGenerics]; };
ADaCGH2 = derive { name="ADaCGH2"; version="2.9.3"; sha256="0rs0ih1zjrmqm56hh9vdz737c9g009x70q4h7g9d612xb38cbfhv"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; };
AGDEX = derive { name="AGDEX"; version="1.17.0"; sha256="16lgq2ycyql4ky2i8x3cd7w77gr946bcb9pp70gb9m1arhjcz41j"; depends=[Biobase GSEABase]; };
AIMS = derive { name="AIMS"; version="1.1.0"; sha256="1k4004b5a5db0rr6dbbbqv1llq1p815b5m5a0q7pqc9vgv0yvv9b"; depends=[Biobase e1071]; };
ALDEx2 = derive { name="ALDEx2"; version="1.1.1"; sha256="01fk2kkrkz2vv7339a82sn1lk3h3c0amkm0n1651am3jdal7bqzs"; depends=[GenomicRanges IRanges S4Vectors SummarizedExperiment]; };
ARRmNormalization = derive { name="ARRmNormalization"; version="1.9.0"; sha256="1kiqi93ivdgqz0m8msi084kbzjx75sb143mb5q27qc9cmc91l6x2"; depends=[]; };
ASEB = derive { name="ASEB"; version="1.13.0"; sha256="1706mpsszwbii70r01vf641lvcaaj1ng2z7kwmnbi0idjab4qqbv"; depends=[]; };
ASGSCA = derive { name="ASGSCA"; version="1.3.0"; sha256="0pfbg7wgm20jy6kkjgv7ix91bkry6xhlm537fs9ww5l6p9q4ia0c"; depends=[MASS Matrix]; };
ASSET = derive { name="ASSET"; version="1.7.0"; sha256="1a3kgllz4nb7n28ip25qdwbawwzbm0l0mfyqlx98zm0ln9crv6mm"; depends=[MASS msm rmeta]; };
ASSIGN = derive { name="ASSIGN"; version="1.5.0"; sha256="0jkp9v3yn6y6izyma86nxkk4nrlh9dkgxd842k4wr1fha06ix807"; depends=[gplots msm Rlab]; };
AffyCompatible = derive { name="AffyCompatible"; version="1.29.1"; sha256="1ldqlm7i5fklv1ih0ghpwh1ark2ccdqnrwdxrn4np5c4pv3zckgl"; depends=[Biostrings RCurl XML]; };
AffyExpress = derive { name="AffyExpress"; version="1.35.0"; sha256="1ysn3c8mpnq3rcir3vqcv0yb0sd41qwm2nmh1j8jx5iq254s5l5z"; depends=[affy limma]; };
AffyRNADegradation = derive { name="AffyRNADegradation"; version="1.15.0"; sha256="0x7mwlzvcxplvijprch0anwbfmj1qkrxqd9rc6f4p0zf88z2csal"; depends=[affy]; };
AffyTiling = derive { name="AffyTiling"; version="1.27.0"; sha256="1jqil9hd10cwsqdlxjd7c8s0p9fvrfcqxiw8rfrq117c8dlgl7w6"; depends=[affxparser affy preprocessCore]; };
AgiMicroRna = derive { name="AgiMicroRna"; version="2.19.0"; sha256="1m1fi6pdqwnfn21a4i7psxdg12bn6bhvcsi43bhwlzxzkrz00257"; depends=[affy affycoretools Biobase limma preprocessCore]; };
AllelicImbalance = derive { name="AllelicImbalance"; version="1.7.23"; sha256="1w2x8kcbfspw68lhy32ikdacq7mgk2jfiz6189n56wawh9i8m43x"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges lattice Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; };
AnalysisPageServer = derive { name="AnalysisPageServer"; version="1.2.0"; sha256="1klamfijdwyl92qmpmr7q4c2wza993d3rv8dl88l4zlf4g1agysl"; depends=[Biobase graph log4r rjson]; };
AnnotationDbi = derive { name="AnnotationDbi"; version="1.31.18"; sha256="1cnq5px6qi7kwmqzbi6xm3w9n7c06vvkgprwc3xkl80mkj8w6hm7"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; };
AnnotationForge = derive { name="AnnotationForge"; version="1.11.19"; sha256="0hqrd96n5j1c832jaqzxkjff04pczr3y8m4c9x4sq7dqj7fcd4a0"; depends=[AnnotationDbi Biobase BiocGenerics DBI RSQLite S4Vectors]; };
AnnotationFuncs = derive { name="AnnotationFuncs"; version="1.19.0"; sha256="1qjvkbqpyhwibdqv1c4n2z5wjnzx0h3kdas3fs33jhb597bxhl1y"; depends=[AnnotationDbi]; };
AnnotationHub = derive { name="AnnotationHub"; version="2.1.40"; sha256="1c7jbgiwf9cv9w1wax7yk5awvfm9iv4f7p7kgp3z3xixhrirj3ap"; depends=[AnnotationDbi BiocGenerics BiocInstaller httr interactiveDisplayBase RSQLite S4Vectors]; };
AnnotationHubData = derive { name="AnnotationHubData"; version="0.99.1"; sha256="1wj65r331l5ix0l5bv8syc60bfiq2c77g0l0glj84xvqvy99pscb"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocGenerics BiocInstaller Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges GEOquery httr IRanges jsonlite OrganismDbi rBiopaxParser RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; };
ArrayExpress = derive { name="ArrayExpress"; version="1.29.1"; sha256="0gyckxsmmh81ykf7mj952h2a4z58xrf9lbnmv884hz7zj317lf83"; depends=[affy Biobase limma XML]; };
ArrayExpressHTS = derive { name="ArrayExpressHTS"; version="1.19.0"; sha256="0qyd9jhkvw4lxqjvix28yzdx08hi7vf77ynlqxcl2q1lb3gmbxar"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops DESeq edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; };
ArrayTV = derive { name="ArrayTV"; version="1.7.0"; sha256="11dlq4lmzw0x8z2qrxff6xlcilp95nd71jpdvg3i5yni3ws6z5m1"; depends=[DNAcopy foreach oligoClasses]; };
ArrayTools = derive { name="ArrayTools"; version="1.29.0"; sha256="1n7ism9ga87mbcbjc155md76gvnzli1vlakzx5ax6hnxcdjzp9n4"; depends=[affy Biobase limma xtable]; };
AtlasRDF = derive { name="AtlasRDF"; version="1.5.0"; sha256="12l629rpkwdmvxjy5kb3d9f72mhcn22nlp7kwgfw79syqilb9wz6"; depends=[hash SPARQL]; };
BAC = derive { name="BAC"; version="1.29.0"; sha256="0xhhpxv8z9f0q4hb1l327x4vzm3jyk1xx9dbbpnhlyjfj9hzzn38"; depends=[]; };
BADER = derive { name="BADER"; version="1.7.0"; sha256="0v1p0s77pi2vxjpsn578741gyr2mgvkppfcaf75qkhs9b6g2m3ps"; depends=[]; };
BAGS = derive { name="BAGS"; version="2.9.0"; sha256="0hhgi874kq98nclmlsqkng0g9gs2jy9qkwl6vmgb7p37h61pmjli"; depends=[Biobase]; };
BBCAnalyzer = derive { name="BBCAnalyzer"; version="0.99.4"; sha256="1jz57h7i3f8pc3xd11944jy8ljmjxdamil7wnsyzz7pbja4m1sy5"; depends=[Rsamtools VariantAnnotation]; };
BCRANK = derive { name="BCRANK"; version="1.31.0"; sha256="12w7yk5911ll3nrksxv861z4lzymakk4yfsqm5j0y6wf1mwd7wyc"; depends=[Biostrings]; };
BEAT = derive { name="BEAT"; version="1.7.0"; sha256="0s4mkp09n913dw2s5d7hms7rbcqzi1rsk8dmc5fdc3wlp7hw277w"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; };
BEclear = derive { name="BEclear"; version="1.1.1"; sha256="02il362iyfccd91id6q77nvvcr50n07jbdv2fr0a0l3vvm1kz2gd"; depends=[Matrix snowfall]; };
BGmix = derive { name="BGmix"; version="1.29.0"; sha256="0s2s6ylbw2wvdkn28842ghsflhcmcn156zw3fxmbdnz7xs29qs1f"; depends=[KernSmooth]; };
BHC = derive { name="BHC"; version="1.21.1"; sha256="1jx9w37mglcswj9drmz8szhb7a7wj1wcvnf4hlmmxkm84g9s9d1p"; depends=[]; };
BRAIN = derive { name="BRAIN"; version="1.15.0"; sha256="09yd3xf3h85wdf56p38mnspyqbswl2v8zb81yg0a008p0l5ax8xr"; depends=[Biostrings lattice PolynomF]; };
BSgenome = derive { name="BSgenome"; version="1.37.5"; sha256="0dkivazijij2jg3sb3p1k32xm2r8dqmcwprxlw9zq2dvp3j2fydq"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; };
BUS = derive { name="BUS"; version="1.25.0"; sha256="1n3s0pw4ijgh927mahwqybks8i6ysybp7xn4a86nrbpr2kqhznrd"; depends=[infotheo minet]; };
BaseSpaceR = derive { name="BaseSpaceR"; version="1.13.2"; sha256="17g87vfx6yy4cdqxchl9ig6s2vhnpfbarssw80ha6kbqw81jh55h"; depends=[RCurl RJSONIO]; };
Basic4Cseq = derive { name="Basic4Cseq"; version="1.5.2"; sha256="1q4xmn7ch5i9np01cmb396cw1jcjbrgrap10any6liia898yrdkm"; depends=[Biostrings caTools GenomicAlignments GenomicRanges RCircos]; };
BayesPeak = derive { name="BayesPeak"; version="1.21.0"; sha256="0mz00mk6gmc5g79iifn5hzfwf7s568n6s6wy46vrnnnnr3sk9w49"; depends=[IRanges]; };
BeadDataPackR = derive { name="BeadDataPackR"; version="1.21.1"; sha256="16dh7byvigd6161qznd1k9cz9hp0r50nbrd8nqlsh28zr60pvrj3"; depends=[]; };
BiGGR = derive { name="BiGGR"; version="1.5.0"; sha256="1q9m870pyhxd1627n94c259094k8jyrg22ni26qpnxkapj18lr0b"; depends=[hyperdraw hypergraph LIM rsbml stringr]; };
BiRewire = derive { name="BiRewire"; version="2.3.6"; sha256="1i2fn3lfc93gxy3llc6wwviq7pn3d3na556i2fl538ia66asm2ax"; depends=[igraph slam tsne]; };
BiSeq = derive { name="BiSeq"; version="1.9.2"; sha256="1z401p2y9sa2cs1zwnkvf3968nyv5c7wcbxvldjyl5dg04qw88wn"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; };
BicARE = derive { name="BicARE"; version="1.27.0"; sha256="19hslc78nijcs6gyxzzcd8856wa1gf5dsrvm4x6r9lprfrk7d7fb"; depends=[Biobase GSEABase multtest]; };
BioMVCClass = derive { name="BioMVCClass"; version="1.37.0"; sha256="1k4ba98cjaqhy33vsmflnwasi0vxr30dvj6861pz625m87fyp2g6"; depends=[Biobase graph MVCClass Rgraphviz]; };
BioNet = derive { name="BioNet"; version="1.29.1"; sha256="1zgvzc0xkgjqdqphipcrq8wfn06sh48kwcx6149v9j0p0pnjwlww"; depends=[AnnotationDbi Biobase graph igraph RBGL]; };
BioSeqClass = derive { name="BioSeqClass"; version="1.27.0"; sha256="1pv7zibcrgbh7xlf2j04jc0m2ddlx8wa198ikvwi85qm09hrvmmk"; depends=[Biobase Biostrings class e1071 foreign ipred klaR nnet party randomForest rpart scatterplot3d tree]; };
Biobase = derive { name="Biobase"; version="2.29.1"; sha256="12cckssh7x4dd8vaapp5nfc5bfcqls8k3rblcfi17z5cpi0jply6"; depends=[BiocGenerics]; };
BiocCaseStudies = derive { name="BiocCaseStudies"; version="1.31.0"; sha256="05nj9i9y8clf406bjcflj8lsrp9x9iw6my1bdqnxg3nv2krp37xn"; depends=[Biobase]; };
BiocCheck = derive { name="BiocCheck"; version="1.5.8"; sha256="14q32ph6p5q6jp877j8g5nixdgpqwp7gbri4z6gv2q75pm28hh46"; depends=[BiocInstaller biocViews codetools devtools graph httr knitr optparse]; };
BiocGenerics = derive { name="BiocGenerics"; version="0.15.6"; sha256="1pb7bpla9ngp04v4i8rjfd8ki827rhfc9dhz475s4v2375cakavr"; depends=[]; };
BiocInstaller = derive { name="BiocInstaller"; version="1.19.14"; sha256="0kbpc5j6xm8w47hwmv2cff2njqfwnymlz9lskd8cdhl0dnr54kdn"; depends=[]; };
BiocParallel = derive { name="BiocParallel"; version="1.3.52"; sha256="1xara11zz1s37rgrx77gzizqigl0lafx28b7cjpnqg9ci18yra01"; depends=[futile_logger snow]; };
BiocStyle = derive { name="BiocStyle"; version="1.7.7"; sha256="1swxcgmh044azq1437lgapn5ji11mdr6s1gd7ivqshngy5bzfk6w"; depends=[]; };
Biostrings = derive { name="Biostrings"; version="2.37.8"; sha256="1x1s2whb3ydkpchjifbrx3blb7ny6wyw0wzkdpdxf3vircj06652"; depends=[BiocGenerics IRanges S4Vectors XVector]; };
BitSeq = derive { name="BitSeq"; version="1.13.0"; sha256="1d397bcdyi3d35l1q1661spm3xhr7hqlsrjr5a2ybsjs3wqkf4fj"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; };
BrainStars = derive { name="BrainStars"; version="1.13.0"; sha256="07wygi0fw0ilg404gx1ifswr61w6qlg8j0vkmnsr0migm70rgzzg"; depends=[Biobase RCurl RJSONIO]; };
BridgeDbR = derive { name="BridgeDbR"; version="1.3.0"; sha256="1z72dd7vvbsz6nc4asfc9qim6svxhmfbpi8f876d45kds2dfgyd5"; depends=[RCurl rJava]; };
BrowserViz = derive { name="BrowserViz"; version="1.1.7"; sha256="12dxpibmx95jgc2nhnmigvd04jij0v3r7as62wzs2jx9wk73v20b"; depends=[BiocGenerics httpuv jsonlite Rcpp]; };
BrowserVizDemo = derive { name="BrowserVizDemo"; version="1.1.0"; sha256="1q04fsl3nxwlmzwxn27bgd66pcjy8sywsmpdny6206kl6rs2a9yk"; depends=[BiocGenerics BrowserViz httpuv jsonlite Rcpp]; };
BubbleTree = derive { name="BubbleTree"; version="1.99.1"; sha256="0na8q2pp9fq79b5bng5r4x8gh6qf3pda5d9g2wiwxn6wm2x337fp"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr rainbow RColorBrewer rgl scales WriteXLS]; };
BufferedMatrix = derive { name="BufferedMatrix"; version="1.33.0"; sha256="0db35771j5hnifn9avs2m1zazr07pga4ybr0vq5q5a1krg73kqn0"; depends=[]; };
BufferedMatrixMethods = derive { name="BufferedMatrixMethods"; version="1.33.0"; sha256="14x330kwv4fj1l974xr0djy6xvmi6z8z7wc3ri3d824rxc6glcld"; depends=[BufferedMatrix]; };
CAFE = derive { name="CAFE"; version="1.5.0"; sha256="1kzy0g0kwvzvlls316cpvwrvnv5m9vklzjjsiiykvfq1wd21s96f"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; };
CAGEr = derive { name="CAGEr"; version="1.11.1"; sha256="0s2qw9dcp833azd6im1hc28rfngrgnhx18g0livlvvvisp5iqs3v"; depends=[beanplot BSgenome data_table GenomicRanges IRanges Rsamtools rtracklayer som VGAM]; };
CALIB = derive { name="CALIB"; version="1.35.0"; sha256="08fgzq80ws4i6i1ppbqxdq3ba9qfdv4h0dyi08f9k91kfh1y31x4"; depends=[limma]; };
CAMERA = derive { name="CAMERA"; version="1.25.2"; sha256="1yydvqkzg0g79g4zd56pj34y87z7l9hik0js9ji6l4w1asiy68pi"; depends=[Biobase graph Hmisc igraph RBGL xcms]; };
CAnD = derive { name="CAnD"; version="1.1.2"; sha256="0nhm8vpm7q7j6ga309l5g46kswzwxsz3limg77mwbgip95n9xz8z"; depends=[ggplot2 reshape]; };
CFAssay = derive { name="CFAssay"; version="1.3.0"; sha256="04zgyvm0rrs780z1vn4zzrh3w01lnhaywyn5ar6dvxcyxnr2y3qs"; depends=[]; };
CGEN = derive { name="CGEN"; version="3.3.0"; sha256="03sdyw6z5xw9ndwkwdli7bz6v0ki8w2slx30v5lgm31lqgl4lpf6"; depends=[mvtnorm survival]; };
CGHbase = derive { name="CGHbase"; version="1.29.0"; sha256="1a9j82jgppbajl6zkkymjdq61lgyrv8aavr2lzi88ipafmqajnvd"; depends=[Biobase marray]; };
CGHcall = derive { name="CGHcall"; version="2.31.0"; sha256="0f03gx73sfn8x1rnynviyg12fs1j4wfz7adh4n1lrvph89y4lkhv"; depends=[Biobase CGHbase DNAcopy impute snowfall]; };
CGHnormaliter = derive { name="CGHnormaliter"; version="1.23.0"; sha256="1rd7lbzmqch6lkbn36ymmp3hnnllqbgwb0rasziqk9ys6633fzv6"; depends=[Biobase CGHbase CGHcall]; };
CGHregions = derive { name="CGHregions"; version="1.27.0"; sha256="0ah7cxaq1qvgwxvgp8jzkwyzdqa4yji7ylhdq2whysvc73aciikg"; depends=[Biobase CGHbase]; };
CMA = derive { name="CMA"; version="1.27.0"; sha256="10bbmlyd8370dr1azrsljlslail5i9pwy8m524laqq85196lf6lv"; depends=[Biobase]; };
CNAnorm = derive { name="CNAnorm"; version="1.15.0"; sha256="13wraamvj1vr5iiwknz5g1jq8zmq3gqzcsphn156rmxivpkxmk8l"; depends=[DNAcopy]; };
CNEr = derive { name="CNEr"; version="1.5.5"; sha256="13w0r1w0547r3xj61ngqnq4vimylr9dzi9j8gjzb0av0vjb4mk9r"; depends=[Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges IRanges RSQLite rtracklayer S4Vectors XVector]; };
CNORdt = derive { name="CNORdt"; version="1.11.0"; sha256="1c01ra85j04wdwaqzvc3qvva9sf878qcy4xaz8kxd6b49ringcia"; depends=[abind CellNOptR]; };
CNORfeeder = derive { name="CNORfeeder"; version="1.9.2"; sha256="1kcaa7jd605pyr4i49wbxkmad4yhbyg5czlmgfn1dc864nb808xs"; depends=[CellNOptR graph]; };
CNORfuzzy = derive { name="CNORfuzzy"; version="1.11.0"; sha256="0kzlad2mkfvqxv4lv8hcc10cspcg31yp49r6pdn2vakif5gbpnz3"; depends=[CellNOptR nloptr]; };
CNORode = derive { name="CNORode"; version="1.11.0"; sha256="0cmv9s23pcd48fpzg92i5h2g10z49n091f2lnarldsay3sj8wlcy"; depends=[CellNOptR genalg]; };
CNTools = derive { name="CNTools"; version="1.25.0"; sha256="05k939z92mmqajirl4w872qnh59093dpxk6da5bcmrr43h65dn95"; depends=[genefilter]; };
CNVPanelizer = derive { name="CNVPanelizer"; version="0.99.9"; sha256="0wppjv0rd1mf1d4r9pwlfnibfkzd6y5n3c9i1gdisxi4hq1dxay0"; depends=[exomeCopy foreach GenomicRanges ggplot2 IRanges NOISeq plyr Rsamtools xlsx]; };
CNVrd2 = derive { name="CNVrd2"; version="1.7.0"; sha256="18970q33dw51b7jas26dl2cr2ghwjxrllgmqykq0f50b55sv01p7"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; };
CNVtools = derive { name="CNVtools"; version="1.63.0"; sha256="005xw4rbp4zdg78jhrq5l4201kq5889py0jh49kfjpk000nvvmj9"; depends=[survival]; };
CODEX = derive { name="CODEX"; version="1.1.0"; sha256="0k3ncnngblbx8hhv5p31dac4s9asjc8hddn4b0z20zkqncpgs16s"; depends=[GenomeInfoDb Rsamtools]; };
COHCAP = derive { name="COHCAP"; version="1.7.0"; sha256="0clr1jh4jnq54phsnl90zfqy1rqy9zpzffyqpziahpfifsaq0kl2"; depends=[WriteXLS]; };
COMPASS = derive { name="COMPASS"; version="1.7.3"; sha256="1zyhidq4qw8xgvamqq18sqysbjjymksy5w1n5kp9y1ihfglymbff"; depends=[abind clue data_table knitr plyr RColorBrewer Rcpp scales]; };
CORREP = derive { name="CORREP"; version="1.35.0"; sha256="0hlij2ch8r3lv130hvyshb82lfqz2c7kr56bka1ghmg6jp0xf1n6"; depends=[e1071]; };
COSNet = derive { name="COSNet"; version="1.3.3"; sha256="0l9sn0cki0mxacxv0bwp3cczcl8rscx8g3lnr0r448f13j8198f4"; depends=[]; };
CRISPRseek = derive { name="CRISPRseek"; version="1.9.9"; sha256="1i727610w054ck1h81ydp6b71wzcyaxh906v1wp1j63hampm85k4"; depends=[BiocGenerics Biostrings BSgenome seqinr]; };
CRImage = derive { name="CRImage"; version="1.17.0"; sha256="1sab95gngwi7c333n9hnbd9fdvdy9i69pjpx5ic5799s7qr03llw"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; };
CSAR = derive { name="CSAR"; version="1.21.0"; sha256="1wn7zxmy5ssj2jkk2624j42yv67wdcigp5ksb6fc2kzpgnvqmxl1"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
CSSP = derive { name="CSSP"; version="1.7.0"; sha256="1ydxj358sfaygzjvh0b042p7gymjyl7nr5cnxrh8c7x2mv2hdh4d"; depends=[]; };
CancerMutationAnalysis = derive { name="CancerMutationAnalysis"; version="1.13.0"; sha256="0c3yjscd1jlgfl869vnv37qdb0y5gicnja1why9ws95qqgmij6zl"; depends=[AnnotationDbi limma qvalue]; };
Cardinal = derive { name="Cardinal"; version="1.1.0"; sha256="0n87rzcfvy5km17n2bk2k85szlwlw7h8g1yqasvpk73sxmjlfc0a"; depends=[Biobase BiocGenerics fields irlba lattice ProtGenerics signal sp]; };
Category = derive { name="Category"; version="2.35.1"; sha256="12y0mgr7lsdb4hhb95qgylxfbdjiqwv1gs9iknvgnyj37gdpxajz"; depends=[annotate AnnotationDbi Biobase BiocGenerics genefilter graph GSEABase Matrix RBGL]; };
CausalR = derive { name="CausalR"; version="0.99.12"; sha256="038raljgrdwsp8dzc5qbzbwr8j8n7dlwmx0jx8liq153l3nwp01p"; depends=[igraph]; };
CellNOptR = derive { name="CellNOptR"; version="1.15.0"; sha256="14x68i7wss44hmfihyqkw340lc0dpsccqsn1l2a0zs0gfkwgw3a5"; depends=[ggplot2 graph hash RBGL RCurl Rgraphviz XML]; };
CexoR = derive { name="CexoR"; version="1.7.4"; sha256="0mcb1pbq4dif3np9cr492g092vvw8ajc44znlbycac8214gjvhf9"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; };
ChAMP = derive { name="ChAMP"; version="1.7.1"; sha256="19m5crx8l5v3m2ikgs3yh3p07p5xxxy5v38158jxwbiybjpca5rx"; depends=[DNAcopy GenomicRanges impute IRanges limma marray minfi plyr preprocessCore RPMM sva wateRmelon]; };
ChIPComp = derive { name="ChIPComp"; version="0.99.3"; sha256="0ln43j22i5w5fyy2lw8744dk23h19z3xpb82rz0j23gbgbai2mfg"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; };
ChIPQC = derive { name="ChIPQC"; version="1.5.3"; sha256="0l5777ywn8pmkxkvkg2z3slb1bjphc31h6bj5cg48rw8ygxfnnh9"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors]; };
ChIPXpress = derive { name="ChIPXpress"; version="1.11.0"; sha256="11aifr69ss1hakrhba985bwz6k1sqkpzvv7gnzn8cgqnzxyr2i6b"; depends=[affy biganalytics bigmemory Biobase frma GEOquery]; };
ChIPpeakAnno = derive { name="ChIPpeakAnno"; version="3.3.7"; sha256="0ndi7b451v49f3mxpj5i7zcrl00zglhavmwq2m14xfda1spx3qf7"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller biomaRt Biostrings BSgenome DBI ensembldb GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges limma matrixStats multtest RBGL regioneR S4Vectors VennDiagram]; };
ChIPseeker = derive { name="ChIPseeker"; version="1.5.11"; sha256="1rjahr2gj1rqsm27w4xvz5g1snbv1x52n4fcfhv93r8waywk5j9m"; depends=[AnnotationDbi BiocGenerics boot dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gridBase gtools IRanges magrittr plotrix plyr RColorBrewer rtracklayer S4Vectors UpSetR]; };
ChIPseqR = derive { name="ChIPseqR"; version="1.23.2"; sha256="1k1vbck7kjyzzgm0hg8hxpq6zfg71rca76q3998fcnnlzsmgvcf4"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; };
ChIPsim = derive { name="ChIPsim"; version="1.23.1"; sha256="13kniwvwa49n1kc9114ljn1fmzaiyb2nh33if596llql60p7nd23"; depends=[Biostrings IRanges ShortRead XVector]; };
ChemmineOB = derive { name="ChemmineOB"; version="1.7.1"; sha256="04agfsdzccsvvvis6vy1gg83gfs4nrph950v6bbzgk15ki32rsjz"; depends=[BH BiocGenerics Rcpp zlibbioc]; };
ChemmineR = derive { name="ChemmineR"; version="2.21.8"; sha256="0qsnj8l446mb0anhqgjh9s76ykqsgqqqmwap48lc56wq9dh9kg9v"; depends=[BH BiocGenerics DBI digest ggplot2 Rcpp RCurl rjson]; };
ChromHeatMap = derive { name="ChromHeatMap"; version="1.23.0"; sha256="1z0w201lbhsapx4p0gn9x65zxjbzh8g51jjfcvy61xrqbbyshwv1"; depends=[annotate AnnotationDbi Biobase BiocGenerics IRanges rtracklayer]; };
ClassifyR = derive { name="ClassifyR"; version="1.3.16"; sha256="1yl766viqk31jy9kbl65abip81xn8yzl4byhvhmh9lbvl907zwpf"; depends=[Biobase BiocParallel locfit ROCR]; };
Clomial = derive { name="Clomial"; version="1.5.0"; sha256="1kxc0bgfrfj0bbx696513mn8n6vficdsd3ag5pqs5xz2bb7vx4qn"; depends=[matrixStats permute]; };
Clonality = derive { name="Clonality"; version="1.17.0"; sha256="1irb13wi5lq28nni0b89fy06vvjwpzigfdwfmzjscrmhzdysrfa6"; depends=[DNAcopy]; };
CoCiteStats = derive { name="CoCiteStats"; version="1.41.0"; sha256="0shp06qy8cvwq0723xc7qxrxv9qhkids3gq3aqqhlvn1s66nw7nq"; depends=[AnnotationDbi]; };
CoGAPS = derive { name="CoGAPS"; version="2.3.3"; sha256="1i9hh6n0lbvb5zn3hi0vxsdjkrz3n50dxgxcy4zcz4zxviamjiwv"; depends=[BH gplots RColorBrewer Rcpp]; };
CoRegNet = derive { name="CoRegNet"; version="1.5.0"; sha256="14yq1f005fcfmfp88h2fy05gdgbskjws11qbdh0ndx3sf93nzxm2"; depends=[arules igraph shiny]; };
CompGO = derive { name="CompGO"; version="1.5.0"; sha256="128ib7w0jxba0p32s796i864b73zjfxac56znd0v4wv4vxv3jiv6"; depends=[GenomicFeatures ggplot2 pathview pcaMethods RDAVIDWebService reshape2 Rgraphviz rtracklayer]; };
ComplexHeatmap = derive { name="ComplexHeatmap"; version="1.4.3"; sha256="0q3dwbf6gd28qyfslv9i5rimrr89dbm361wd1z6s3v8piinf88r0"; depends=[circlize colorspace dendextend GetoptLong GlobalOptions RColorBrewer]; };
ConsensusClusterPlus = derive { name="ConsensusClusterPlus"; version="1.23.0"; sha256="13iikfh234d2z4k487lb3shmnrfijygrf6gz3x481gba2psnbjyw"; depends=[Biobase cluster]; };
CopyNumber450k = derive { name="CopyNumber450k"; version="1.5.0"; sha256="0mjhmh4shgckv43zvg4yqr17jfi9p9xnc40fwy9fw9c4vjcfsvsj"; depends=[Biobase BiocGenerics DNAcopy minfi preprocessCore]; };
CopywriteR = derive { name="CopywriteR"; version="2.1.3"; sha256="0qhl3lbdf9fsm6hx45sk2nihikbzh08lbnwaz1as3wf5cx7zm08c"; depends=[BiocParallel chipseq data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; };
CorMut = derive { name="CorMut"; version="1.11.0"; sha256="0s92bh3610frxbm0gqvlznay70dy7x61hvc0qgh6xmcyz0llx27g"; depends=[igraph seqinr]; };
Cormotif = derive { name="Cormotif"; version="1.15.0"; sha256="1v36ylwkxr6yqasckmmj2dkr7s72f39srhwvm93rs1rl7kw4dc4p"; depends=[affy limma]; };
CoverageView = derive { name="CoverageView"; version="1.5.2"; sha256="1bxx35h9d7gwm5m16i4hkf54zghij95jfxxc46x83glccsirah2f"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; };
DART = derive { name="DART"; version="1.17.1"; sha256="1z7lf4d9yjcyikq9j3348z5sxjqaly46c0ls7f9cl8nnqdpw7w42"; depends=[igraph]; };
DASiR = derive { name="DASiR"; version="1.9.0"; sha256="0b3b7kmhsd6bb1s57c89h495j1ax6779wfca112fq6ba3z4dih3n"; depends=[Biostrings GenomicRanges IRanges XML]; };
DAVIDQuery = derive { name="DAVIDQuery"; version="1.29.0"; sha256="0gvm6qjx8y61nbnbz66md74pfc4awj4900pjr8q1m5sip5yzbxj2"; depends=[RCurl]; };
DBChIP = derive { name="DBChIP"; version="1.13.0"; sha256="0gk9kgmyp9540sq5gpbn77ii8rl5kjm0nxsr80r5cn4q9gsjyyis"; depends=[DESeq edgeR]; };
DECIPHER = derive { name="DECIPHER"; version="1.15.2"; sha256="17g0y27q686msgh3k8w65bc25k06f9p0ykfcaa3zil5phl9qxpz1"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; };
DEDS = derive { name="DEDS"; version="1.43.0"; sha256="1z049ppkrbyp0xjpiygz5i6rbxbv3vvnvspwz2vv77495v7ykj6z"; depends=[]; };
DEGraph = derive { name="DEGraph"; version="1.21.0"; sha256="17f04qngcx8y4glr5wiryi8fifbla8fxh8nb6wagnrai5x6vhzis"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; };
DEGreport = derive { name="DEGreport"; version="1.5.0"; sha256="14mrfnmkik74yf5vml03x96brq7qlja2hpvndbffxr5a8ddb7117"; depends=[coda edgeR ggplot2 Nozzle_R1 plyr quantreg]; };
DEGseq = derive { name="DEGseq"; version="1.23.0"; sha256="0993f140wwv9z9l53f9g74x7l28bflxq7wdcbilfz7ijhh7isr7p"; depends=[qvalue samr]; };
DESeq = derive { name="DESeq"; version="1.21.0"; sha256="13f6phdf9g325dlpn38l7zrq3mzldhldil134acxi9p3l50bx23y"; depends=[Biobase BiocGenerics genefilter geneplotter lattice locfit MASS RColorBrewer]; };
DESeq2 = derive { name="DESeq2"; version="1.9.41"; sha256="1d7h95cyaqn63wnrf1avj8z72rsqssl0nnwvn8b61792sq75qfyw"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; };
DEXSeq = derive { name="DEXSeq"; version="1.15.11"; sha256="19b2s0h8k2h6m83x4hyc3r1x3wdlm366gw4l3cmk9xj8kw540x3b"; depends=[Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools statmod stringr]; };
DFP = derive { name="DFP"; version="1.27.0"; sha256="0xcipbhfzvrpbm6dh2y3lbvfbwpn4wly32sssfm702zik5wm9dy1"; depends=[Biobase]; };
DMRcaller = derive { name="DMRcaller"; version="1.1.1"; sha256="1g7q7cwivvb0m2y4fixvbxp51zfag1jv66bdlai3gawr94pcx56y"; depends=[GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; };
DMRcate = derive { name="DMRcate"; version="1.5.61"; sha256="0ss8zk2b1y83q49pv9fdm2rqw5hlnd189knfg1y8y0psfjhc9knp"; depends=[limma minfi]; };
DMRforPairs = derive { name="DMRforPairs"; version="1.5.0"; sha256="0d14qgx07xq7wa687a2znpfw0zcg8ccvxjawkjdbi6ayjwpb6zd7"; depends=[GenomicRanges Gviz R2HTML]; };
DNABarcodes = derive { name="DNABarcodes"; version="0.99.6"; sha256="0m4ga55lm0dxdkqw4x1lkyjsp9lm5zj4nd043nqz5pfk0wn7j401"; depends=[BH Matrix Rcpp]; };
DNAcopy = derive { name="DNAcopy"; version="1.43.0"; sha256="1v1i4bfkblimdmazv29csqr46jaiv8lncihgywvq5wfn8ccr7xl9"; depends=[]; };
DOQTL = derive { name="DOQTL"; version="1.3.1"; sha256="1yvpafff24kzwsbr0l21fcnccbj4khil1s5wsnd07kj23wnsakz6"; depends=[annotate annotationTools Biobase BiocGenerics biomaRt corpcor doParallel foreach GenomicRanges ggbio ggplot2 hwriter IRanges iterators mclust QTLRel regress rhdf5 Rsamtools RUnit VariantAnnotation XML]; };
DOSE = derive { name="DOSE"; version="2.7.11"; sha256="0762rvy5sxz7789iyhksq6wzyyhfjjfk58mxnymkl6jg6ypvhy0w"; depends=[AnnotationDbi ggplot2 GOSemSim igraph plyr qvalue reshape2 scales]; };
DSS = derive { name="DSS"; version="2.8.2"; sha256="076pkw1i5d3qi2k91ix5mrs6fjc2wknrzfanxyynhzv28mwm25gw"; depends=[Biobase bsseq]; };
DTA = derive { name="DTA"; version="2.15.0"; sha256="0amibwj5mnm2plkf3ys8sgy4lpwr60fnvika0psdrahgb4blmkzp"; depends=[LSD scatterplot3d]; };
DeMAND = derive { name="DeMAND"; version="0.99.9"; sha256="013zwa4flbsf9rwlnbzhg1sgfqwvrr01v9bhgpk73kx312zg30sg"; depends=[KernSmooth]; };
DeconRNASeq = derive { name="DeconRNASeq"; version="1.11.0"; sha256="0665chwpbs2pw753nb2x65cs9r9ghb5123bsrzrv6pz2p3ni8yz7"; depends=[ggplot2 limSolve pcaMethods]; };
DiffBind = derive { name="DiffBind"; version="1.15.3"; sha256="1akx65vi8razwpfxnvilh4x1vb8qbsfr2q8lygsb3imfrrb83q44"; depends=[amap edgeR GenomicAlignments GenomicRanges gplots IRanges lattice limma locfit RColorBrewer Rsamtools SummarizedExperiment systemPipeR zlibbioc]; };
DiffLogo = derive { name="DiffLogo"; version="0.99.5"; sha256="1p2826lnr5xrf9va9h76r371fs3lgjrlkjjnyfvian6nz2xp9ibj"; depends=[cba]; };
DirichletMultinomial = derive { name="DirichletMultinomial"; version="1.11.2"; sha256="01wmvs7alq7gy1nmb5gdbglfs51qdhwysbmmjvh7yyhb8dqbvrj4"; depends=[IRanges S4Vectors]; };
DriverNet = derive { name="DriverNet"; version="1.9.0"; sha256="0visiafw9m7i0yy70fvnmdkhg9z946sg5hdl5vnvj8c6g3mfacxy"; depends=[]; };
DrugVsDisease = derive { name="DrugVsDisease"; version="2.9.0"; sha256="1wmw1r0x7kkmp47743aq0pp71wamnf5gsk6bhz6rdvswzb12iyqk"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt GEOquery limma qvalue RUnit xtable]; };
DupChecker = derive { name="DupChecker"; version="1.7.0"; sha256="02wwwnx3w8rxiassd62xr295paw8py9pqsk1396qb5k773l6bfxv"; depends=[R_utils RCurl]; };
DynDoc = derive { name="DynDoc"; version="1.47.0"; sha256="0gpmhqav4dx8p86pkh18fpmlki60zqaz00m2zhziiawigbrz41ph"; depends=[]; };
EBImage = derive { name="EBImage"; version="4.11.19"; sha256="1m7753dk5ddya53zm2rajhmn4x7kmag38pnbl1q1jnmwl0nr6vwp"; depends=[abind BiocGenerics fftwtools jpeg locfit png tiff]; };
EBSeq = derive { name="EBSeq"; version="1.9.4"; sha256="01pzjhqx61005jbw3l3m24h10225fkml9889aqvxdxzv5n4rvc03"; depends=[blockmodeling gplots testthat]; };
EBSeqHMM = derive { name="EBSeqHMM"; version="1.3.1"; sha256="0lyf363f1wfgacrj5cyq8n3f3ssl5q400mn2q94cpai6k0qmvgs1"; depends=[EBSeq]; };
EBarrays = derive { name="EBarrays"; version="2.33.0"; sha256="1zvfqf49chiks5vmj5ki89pvy14bm1cman47n3ybba1gg8z8mw94"; depends=[Biobase cluster lattice]; };
EBcoexpress = derive { name="EBcoexpress"; version="1.13.0"; sha256="0fl0a7xasqcwvjlgf3h51akyhwpras2865m2idz1nmacm42q1w79"; depends=[EBarrays mclust minqa]; };
EDASeq = derive { name="EDASeq"; version="2.3.2"; sha256="0l1mmpy71pqqmqnx4xxn1v0kvsk0cfik98qszczh1ag8wyi1ky3m"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics biomaRt Biostrings DESeq GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; };
EDDA = derive { name="EDDA"; version="1.7.0"; sha256="0dyyhnc9v232njqnrcaq78g2m1qws30qcf6bsswq2di235ymk2g0"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; };
ELBOW = derive { name="ELBOW"; version="1.5.0"; sha256="0lnc5hw2x4p9yd561w9dwplf7q2slcaghxsh5796bmyxjxhxanpy"; depends=[]; };
ELMER = derive { name="ELMER"; version="1.1.1"; sha256="0f777sm920175g0ppq4cc0bn83wcdy12by5nkslxh3n97prqclhm"; depends=[GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges minfi reshape S4Vectors]; };
EMDomics = derive { name="EMDomics"; version="1.1.3"; sha256="0jrgz3rbg9ap33n0wigzc76vivvnd5hiv1pfhfyymir76qd9jhar"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; };
ENCODExplorer = derive { name="ENCODExplorer"; version="1.1.6"; sha256="12jfibll1zyf14nb3fhkffj0dw6hxd4bjsf43jzwhnnn2cxsbrqq"; depends=[jsonlite RSQLite]; };
ENVISIONQuery = derive { name="ENVISIONQuery"; version="1.17.0"; sha256="1dnlw62hwysij63yc856c2sncgfwdq0rpmcds6i6wigdcfd21w8q"; depends=[rJava XML]; };
ENmix = derive { name="ENmix"; version="1.2.0"; sha256="06l732fipnrhbmr6wylv3g289n2zj1dfazqgppxgvnmf3wh6308r"; depends=[Biobase doParallel foreach geneplotter impute MASS minfi preprocessCore sva wateRmelon]; };
EasyqpcR = derive { name="EasyqpcR"; version="1.11.1"; sha256="0s2jyg6b14wbyl0c1n89c7bi7p88g7s1rz8d830p9hh2x75ly6zj"; depends=[gWidgetsRGtk2 matrixStats plotrix plyr]; };
EnrichedHeatmap = derive { name="EnrichedHeatmap"; version="0.99.1"; sha256="1i0lzsbclvfk02kqlsx3p38wwlzf2f6dr29049gpr2xwlq9hdmnh"; depends=[ComplexHeatmap GenomicRanges IRanges matrixStats]; };
EnrichmentBrowser = derive { name="EnrichmentBrowser"; version="1.99.9"; sha256="1njrmz2cgwcafdpvf47bwlb47m6lcasc3pg029ngdxh8cympd2yj"; depends=[AnnotationDbi Biobase biocGraph biomaRt ComplexHeatmap DESeq2 EDASeq edgeR geneplotter graph GSEABase hwriter KEGGgraph KEGGREST limma MASS mixtools neaGUI npGSEA PathNet pathview ReportingTools Rgraphviz S4Vectors safe SparseM SPIA stringr SummarizedExperiment topGO]; };
ExiMiR = derive { name="ExiMiR"; version="2.11.0"; sha256="1gmfrn3jq4pz5wmijywhxr0kx79534fhrfnqyhjmqq3s9sjn2cbh"; depends=[affy affyio Biobase limma preprocessCore]; };
ExpressionView = derive { name="ExpressionView"; version="1.21.0"; sha256="026w9f119j26c1078nwg4rhfc54wlb3i56iy8bi0cjpvbm4p698f"; depends=[AnnotationDbi bitops caTools eisa isa2]; };
FEM = derive { name="FEM"; version="2.5.2"; sha256="03mxw6rx23cqw50jnbrn6mbjzm83f2p0gdf7zhn3ra0852inj7qg"; depends=[AnnotationDbi BiocGenerics corrplot graph igraph impute limma marray Matrix]; };
FGNet = derive { name="FGNet"; version="3.3.6"; sha256="1cq2ishqf9cbw42n5agq6bwas0vvh6b9m474cn4g29q6rw6y490f"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; };
FISHalyseR = derive { name="FISHalyseR"; version="1.3.0"; sha256="0xnmww7ldyxghq7mfjc3zhx1qahskmny3088ar0mj9v4iz4a987q"; depends=[abind EBImage]; };
FRGEpistasis = derive { name="FRGEpistasis"; version="1.5.0"; sha256="1vvcphgirvghzjvic5yq6nl229ryc0y4kp5qd25kgspbcgblg01q"; depends=[fda MASS]; };
FindMyFriends = derive { name="FindMyFriends"; version="0.99.1"; sha256="0hmpcwp198i8mh3knklc9fwxr422x8dfbyjbf8j7xkr4x31m65y7"; depends=[Biobase BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; };
FlowRepositoryR = derive { name="FlowRepositoryR"; version="1.1.1"; sha256="1xxljbdbvxg1dbm82r86frw2bskmfrl6rv98xz0z4jfc0w4ag3pd"; depends=[RCurl XML]; };
FlowSOM = derive { name="FlowSOM"; version="1.1.0"; sha256="0k5pw46dbhm6nssr5szj251v3479xgky2iipihrdvp5lr5lhxilq"; depends=[BiocGenerics ConsensusClusterPlus flowCore igraph tsne]; };
FourCSeq = derive { name="FourCSeq"; version="1.3.5"; sha256="1mjvgi1cbfi5brl7l0v8026hjjksh81kpslm6w6i6b1llcn1sf65"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; };
FunciSNP = derive { name="FunciSNP"; version="1.11.1"; sha256="1lc4dbbv5bcdk4zs80sxfqnwnm424i6qjmv5bcslblxblfnypmvv"; depends=[AnnotationDbi ChIPpeakAnno GenomicRanges ggplot2 IRanges plyr reshape Rsamtools rtracklayer scales snpStats VariantAnnotation]; };
GENE_E = derive { name="GENE.E"; version="1.9.0"; sha256="10c9mw9f619z2ai43qvagj7p1lsqpv90z8vzsyyxym614lvlqfzm"; depends=[RCurl rhdf5]; };
GENESIS = derive { name="GENESIS"; version="1.1.3"; sha256="1wjnhkq7kpfynzx09zgwri7cvvyymzs8ifqwl6c1wzfzlr119ygs"; depends=[gdsfmt GWASTools]; };
GEOmetadb = derive { name="GEOmetadb"; version="1.29.0"; sha256="1s9x3dbh61xisk5hwzqv3991savygdcwv5cww447w4bfgwffzplg"; depends=[GEOquery RSQLite]; };
GEOquery = derive { name="GEOquery"; version="2.35.7"; sha256="11a7zihni1b7bfqw9l1bqn3p4spi74xxrjyppr3cxgfbgqz9rxgs"; depends=[Biobase RCurl XML]; };
GEOsearch = derive { name="GEOsearch"; version="0.99.1"; sha256="0d3vpl52c2vdsdqg0s942cfv08wc3aa03dw3pggiz0hwrssf77n9"; depends=[]; };
GEOsubmission = derive { name="GEOsubmission"; version="1.21.0"; sha256="1rr8k4myw7jibibclphj63hp4byk3v0cg37vnyc5b0iacdp8s9gn"; depends=[affy Biobase]; };
GEWIST = derive { name="GEWIST"; version="1.13.0"; sha256="1mlzyjggv0rh9xk9pifshhdri3vapvzk2h47g75wx57yfapamcwn"; depends=[car]; };
GGBase = derive { name="GGBase"; version="3.31.3"; sha256="0hzksik9r853qfaqlbahymh6n3rs6hhbccc0hngckplph3hwranr"; depends=[AnnotationDbi Biobase BiocGenerics digest genefilter GenomicRanges IRanges limma Matrix S4Vectors snpStats SummarizedExperiment]; };
GGtools = derive { name="GGtools"; version="5.5.4"; sha256="17lk74p7ci9llv9n7qqh5c7bpnrgy25k0svz52zpr9jajm0pwfcg"; depends=[AnnotationDbi biglm Biobase BiocGenerics Biostrings bit data_table ff GenomeInfoDb GenomicRanges GGBase ggplot2 Gviz hexbin IRanges iterators reshape2 ROCR Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; };
GLAD = derive { name="GLAD"; version="2.33.0"; sha256="19db59ry832vrbk86p1bppr52mwri2pz8iwx5ibg18pxr7pw6jw7"; depends=[]; };
GOFunction = derive { name="GOFunction"; version="1.17.0"; sha256="0scjk4zlfrqv3z6ii0bvmhj3d880xyc2p5f4hqmfqn6cml0d6ncj"; depends=[AnnotationDbi Biobase graph Rgraphviz SparseM]; };
GOSemSim = derive { name="GOSemSim"; version="1.27.4"; sha256="0czg7qincsv001caqsswyz94hzj0ykjy1qhva9rg5zhpfjwdahwq"; depends=[AnnotationDbi Rcpp]; };
GOSim = derive { name="GOSim"; version="1.7.0"; sha256="0dzx6nnd8p4p5v5rsmbpw6wl0i1jq3n4s0qc8z4xnp2n2757r2z4"; depends=[annotate AnnotationDbi cluster corpcor flexmix graph Matrix RBGL Rcpp topGO]; };
GOTHiC = derive { name="GOTHiC"; version="1.5.5"; sha256="0y1rfsghb9hxvy26r8i4fi94gykprcx4nxqpfkdz03pxrz0y3vbr"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges rtracklayer S4Vectors ShortRead]; };
GOexpress = derive { name="GOexpress"; version="1.3.2"; sha256="151hqhyjaq3ggigibw8fc1zb09578p69ih09rj3irf0avpai6rbi"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer stringr VennDiagram]; };
GOstats = derive { name="GOstats"; version="2.35.1"; sha256="1almz6gc2xm3njz8pjvynpnniz7xdd8z5293cfvx91v11lz70v7f"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category graph RBGL]; };
GOsummaries = derive { name="GOsummaries"; version="2.3.0"; sha256="09c4grz9ljwrz37yv9k6gna9zxk708vxfz2190xz7za0mrql1k3k"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; };
GRENITS = derive { name="GRENITS"; version="1.21.0"; sha256="1lm0074dw0248vyj9wl99if489dx38ia8wscx61842jyi4qz7r2q"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; };
GSAR = derive { name="GSAR"; version="1.3.4"; sha256="1hgakyl4ply01m77ffy2vjflwzn5iqnfbsp4a4smi762innm5f3z"; depends=[igraph]; };
GSCA = derive { name="GSCA"; version="1.7.0"; sha256="1hv9r59fx1hbjnga26shb8crxji1bzmzjmwfbk1wrlm8dsikjnyg"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; };
GSEABase = derive { name="GSEABase"; version="1.31.3"; sha256="1jq3s3pha624gns7d7yf8qqgzq0fm3qgjrkwdkxgbpc7b09baiz0"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; };
GSEAlm = derive { name="GSEAlm"; version="1.29.0"; sha256="13ixp6vq9g9ag5rndc40gw64vny70zcj6lll7r7vz06p5i9b6kyk"; depends=[Biobase]; };
GSRI = derive { name="GSRI"; version="2.17.0"; sha256="158dipqi9mh79d42pv5qsa1gwxz660kl474rdnkd59rnxh7ziyf3"; depends=[Biobase fdrtool genefilter GSEABase les]; };
GSReg = derive { name="GSReg"; version="1.3.0"; sha256="07s60j68i1r64y8x8r1r9s6w020n41137cf2aj9hrsw6gn4ajh15"; depends=[]; };
GSVA = derive { name="GSVA"; version="1.17.0"; sha256="0rk1srk95qia5ap69c2lysgv7r8qh50f50v9b569d2v2vjb0hpq5"; depends=[Biobase BiocGenerics GSEABase]; };
GWASTools = derive { name="GWASTools"; version="1.15.14"; sha256="1ir5czbs3z9myq8659xc15i61bk0yifwcdycbgzmfd9frf9mw8ji"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf ncdf quantsmooth RSQLite sandwich survival]; };
GeneAnswers = derive { name="GeneAnswers"; version="2.11.1"; sha256="15rf8syxhj3332d7f4jkvyby05r3iia7p1ryz1zv629waz6mr4nh"; depends=[annotate Biobase downloader Heatplus igraph MASS RBGL RColorBrewer RCurl RSQLite XML]; };
GeneExpressionSignature = derive { name="GeneExpressionSignature"; version="1.15.0"; sha256="0wni584412af8a2wzk5r8nf63grw86d6fk74cmwksirw2734mmqs"; depends=[Biobase PGSEA]; };
GeneGA = derive { name="GeneGA"; version="1.19.0"; sha256="0irfr4q55rda8acchgcqsksh6ija87fryj822nb3d4zklv9raqfv"; depends=[hash seqinr]; };
GeneMeta = derive { name="GeneMeta"; version="1.41.0"; sha256="10c99i6bm3aid20xm59acqsa2hzvp5ym98nlb8fyscyigbrzvid8"; depends=[Biobase genefilter]; };
GeneNetworkBuilder = derive { name="GeneNetworkBuilder"; version="1.11.0"; sha256="0ynjmb7a1jk2gzxynjzdh6qw90h3f2r7yxwi94ql7hq7l2jhl051"; depends=[graph plyr Rcpp]; };
GeneOverlap = derive { name="GeneOverlap"; version="1.5.0"; sha256="0n1vy6hfzac73x1dy9abrgyhhs91zhikhy11zhw07j8ciswymm84"; depends=[gplots RColorBrewer]; };
GeneRegionScan = derive { name="GeneRegionScan"; version="1.25.0"; sha256="0w7lfj2d0ih8gyr148digrfs5dmmixzyghx73vjcd60kk5bgcr80"; depends=[affxparser Biobase Biostrings RColorBrewer]; };
GeneSelectMMD = derive { name="GeneSelectMMD"; version="2.13.0"; sha256="1yddwwln50v9ivsnv4hzy5azk0rs480plpplqc058xixjvyy2k1l"; depends=[Biobase limma MASS survival]; };
GeneSelector = derive { name="GeneSelector"; version="2.19.0"; sha256="0i63g36hz26493i4676bbbwy71f3m928bj4bn7zxcf5ax4jqac1j"; depends=[Biobase limma multtest samr siggenes]; };
GeneticsDesign = derive { name="GeneticsDesign"; version="1.37.0"; sha256="08awfvk4n6j3y1ncf0r7zwmiyywz9k3xflg5ll4ilxx5pjn8lrnn"; depends=[gmodels gtools mvtnorm]; };
GeneticsPed = derive { name="GeneticsPed"; version="1.31.0"; sha256="17fs4gvirji3qp9ik480jpz6qrbq209sjhn57ipkaafvx7rw5j4i"; depends=[gdata genetics MASS]; };
GenoView = derive { name="GenoView"; version="1.3.0"; sha256="09k9xjmx3qmsfr3a4vrfgs73r0xsymf5m4gl0zjjk4cnfk7bs41v"; depends=[biovizBase GenomicRanges ggbio ggplot2 gridExtra]; };
GenomeGraphs = derive { name="GenomeGraphs"; version="1.29.0"; sha256="0kl2gapg7hnl4zfsamb3vwmj7z0vag7vd8viwh0pwqj0pd45dswa"; depends=[biomaRt]; };
GenomeInfoDb = derive { name="GenomeInfoDb"; version="1.5.16"; sha256="1fgmvx9w2s14nnnv8397lxgzlhsm9rr26l0w2mi8x098kb6h7ih2"; depends=[BiocGenerics IRanges S4Vectors]; };
GenomicAlignments = derive { name="GenomicAlignments"; version="1.5.18"; sha256="0zxw1mss8jaqimhamwqbziyzq90f5fijinmnqkmn5ndiy3h4krfi"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; };
GenomicFeatures = derive { name="GenomicFeatures"; version="1.21.30"; sha256="1n2r0n1h5716jjfkhlp7f27fq25rbj2dh6f8gaihkbjk4h92bdrd"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; };
GenomicFiles = derive { name="GenomicFiles"; version="1.5.8"; sha256="1zc8aazay2xix3xrs8kbqlz0lz9km54l58ghy64c4xvdjlbjwsy5"; depends=[BiocGenerics BiocParallel GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
GenomicInteractions = derive { name="GenomicInteractions"; version="1.3.9"; sha256="081gfay79qr8h98l7j481wc051pdpdc2c7g1r2136xv2m39x67i7"; depends=[BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph IRanges Rsamtools S4Vectors stringr]; };
GenomicRanges = derive { name="GenomicRanges"; version="1.21.29"; sha256="1rlpgwlpmn0p5xyb5igwm1glq9g8lqhl27qimn58n4qffcdk1v6x"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; };
GenomicTuples = derive { name="GenomicTuples"; version="1.3.1"; sha256="0i91qs1c84lyh0irhgnbnnvag0j3f48gfxxndk5x0yjf9kpa0hca"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; };
Genominator = derive { name="Genominator"; version="1.23.0"; sha256="03pacbd3d5q7ykrflg258zcf8yfzm8kc976aw3d38q7agkia69h2"; depends=[BiocGenerics DBI GenomeGraphs IRanges RSQLite]; };
GlobalAncova = derive { name="GlobalAncova"; version="3.37.0"; sha256="1j35r39plsxlkla2bv7wvg0if5gs2mfy71g6zb65g6ml5cqws45r"; depends=[annotate AnnotationDbi corpcor globaltest]; };
GoogleGenomics = derive { name="GoogleGenomics"; version="1.1.3"; sha256="1y5jkxhrfi5gkckfmilqsshv5l5ql25iwpmqbr5slch1h4myskbl"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicRanges httr IRanges rjson Rsamtools S4Vectors VariantAnnotation]; };
GraphAT = derive { name="GraphAT"; version="1.41.0"; sha256="1mjd54zy4l7ivy347zn5rv6gn65sjhxn2cxm417fm83hm542327l"; depends=[graph MCMCpack]; };
GraphAlignment = derive { name="GraphAlignment"; version="1.33.0"; sha256="14zxbw8cj12wr6c2a0a6mfskr9sqf6cdfyz0ccbzy91d1lnrxzdf"; depends=[]; };
GraphPAC = derive { name="GraphPAC"; version="1.11.0"; sha256="1p0rkc1qz0yf0lxyjfvrpd7nqky855kmhb1pdwxg3ckifnypw5mc"; depends=[igraph iPAC RMallow TSP]; };
GreyListChIP = derive { name="GreyListChIP"; version="1.1.1"; sha256="0kbl9m37aiyv6yrqg4z352k7dpdpxm7yywymjfa9gdd0rv1cy401"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer]; };
Guitar = derive { name="Guitar"; version="0.99.14"; sha256="1wwwhham0ljn5bc8r055jz7y08vvwpa2w9vi88racsvqywlq12d3"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer]; };
Gviz = derive { name="Gviz"; version="1.13.7"; sha256="0slr4gx35ri66ilx5d4qqi8s08hv64lmxrnfcb2gsny16hb8yqcl"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; };
HCsnip = derive { name="HCsnip"; version="1.9.0"; sha256="14f881v776xn8lw4lvjc26s72laxs9zph902875f76ykbzygayd9"; depends=[Biobase clusterRepro coin fpc impute randomForestSRC sigaR sm survival]; };
HDTD = derive { name="HDTD"; version="1.3.4"; sha256="0hzj2k4dlqy8i6j98gxqcb1kcvh46vz9fq47vjijgnskczzwyk39"; depends=[]; };
HELP = derive { name="HELP"; version="1.27.0"; sha256="1n2fj316ha2l941biyr9d56pry6n39drwa820rgyrwd116rzx79d"; depends=[Biobase]; };
HEM = derive { name="HEM"; version="1.41.0"; sha256="0qi6q305p0vdhyah3860dpd3z0lyyn6wn5x0m3mj3p739pk288ik"; depends=[Biobase]; };
HIBAG = derive { name="HIBAG"; version="1.5.1"; sha256="18j40pzw46m7plb1kqmcwm1g2bpa0wh58kqih8in6xrs81hq34w0"; depends=[]; };
HMMcopy = derive { name="HMMcopy"; version="1.11.0"; sha256="1lcddw963lryks9xc0faw8x0pin4k4r9zdfl5iqi5mbrzn5pp7h3"; depends=[geneplotter IRanges]; };
HTSFilter = derive { name="HTSFilter"; version="1.9.0"; sha256="1y5k26jc2gfrwp0l7jsx6br70hsxqhgdvmhbsagsampl67yjw6by"; depends=[Biobase DESeq DESeq2 edgeR]; };
HTSanalyzeR = derive { name="HTSanalyzeR"; version="2.21.0"; sha256="1drmd4jycb85wg857daj3jpkj9gxa5asyv2sd873daj03q9c1yld"; depends=[AnnotationDbi biomaRt BioNet cellHTS2 graph GSEABase igraph RankProd]; };
HTSeqGenie = derive { name="HTSeqGenie"; version="3.19.1"; sha256="0kv9x90zspxwjz4hx81y6fi8nsin367zmfpzrz5kc6an49s94xi4"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer ShortRead VariantAnnotation VariantTools]; };
HTqPCR = derive { name="HTqPCR"; version="1.23.0"; sha256="0zp7jbnh5zbrqaq84q1146sb3qg8n0kz6m9v5mi8a9l2fcvg2q09"; depends=[affy Biobase gplots limma RColorBrewer]; };
Harshlight = derive { name="Harshlight"; version="1.41.0"; sha256="12wpfg785dfn5gwp014dfzk9x8zqvr9qrrs0pq32by576knida5z"; depends=[affy altcdfenvs Biobase]; };
Heatplus = derive { name="Heatplus"; version="2.15.2"; sha256="1hjzyb1lyvw6gaqlpx45znadr5f317pmsk169a0h0ad9nyk2629p"; depends=[RColorBrewer]; };
HiTC = derive { name="HiTC"; version="1.13.3"; sha256="1db4ijhgqwmcbgxwprf02l267g8jb9z8b9s8vxfw4s7pk5mpqm4s"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; };
HilbertCurve = derive { name="HilbertCurve"; version="0.99.2"; sha256="17az5z0wr5j0cz2fjk6jyas9g0cvavp9c6p5bw7src0g27w1967k"; depends=[GenomicRanges HilbertVis IRanges png]; };
HilbertVis = derive { name="HilbertVis"; version="1.27.0"; sha256="1qcyzn86v0xhb9zc1vcia1n53i33sgncbb7lpink5llmjpalacq6"; depends=[lattice]; };
HilbertVisGUI = derive { name="HilbertVisGUI"; version="1.27.0"; sha256="03jxn398xv97mmvbpl0qymmydhm4i4c36qnw4s22ch7wy3h9x6h8"; depends=[HilbertVis]; };
HybridMTest = derive { name="HybridMTest"; version="1.13.0"; sha256="0r4j8yllxzwn5r2rvpkqx6w23836lmly8wlshib6p917ky0djw4s"; depends=[Biobase fdrtool MASS survival]; };
IMPCdata = derive { name="IMPCdata"; version="1.3.0"; sha256="003qvf47bcfcwxkw7zpzdvpnw7xhd2y12n9by2b1ns5i5jka754b"; depends=[rjson]; };
INPower = derive { name="INPower"; version="1.5.0"; sha256="0msz24bixp7b5a83n40675xq8fglrhbg8972a93x2k8jgb5gdh38"; depends=[mvtnorm]; };
INSPEcT = derive { name="INSPEcT"; version="0.99.8"; sha256="0pzh0xkh4py6rwnjqz4wqfnk2h08dp5q9gc4cgxls6gl3574i9ny"; depends=[Biobase BiocParallel deSolve GenomicFeatures GenomicRanges IRanges preprocessCore pROC rootSolve]; };
IONiseR = derive { name="IONiseR"; version="0.99.12"; sha256="0pmigp0j1y3cwzzgnghwx781mdlrr9fhcqapr602r97w82pazab0"; depends=[BiocGenerics Biostrings data_table dplyr ggplot2 magrittr rhdf5 ShortRead tidyr XVector]; };
IPPD = derive { name="IPPD"; version="1.17.0"; sha256="0afhz5ishr1my9gnksa4dl92lfnb2fnvdpsh3n7kj4j2s8xx0crc"; depends=[bitops digest MASS Matrix XML]; };
IRanges = derive { name="IRanges"; version="2.3.22"; sha256="0d2qp6rkx028c9341lwxwgajhdml3v16swd6scsn8q9s3pfmblrb"; depends=[BiocGenerics S4Vectors]; };
ITALICS = derive { name="ITALICS"; version="2.29.0"; sha256="16l0wq7bxi3nz8f5hggnzddhg07vrcca480ygvmi03cxajxbjr9h"; depends=[affxparser DBI GLAD oligo oligoClasses]; };
IVAS = derive { name="IVAS"; version="1.1.0"; sha256="15jnmi40bsnyf5yw86gvqppv0g8250lsi74gsjzhm7gijhlxfnrm"; depends=[AnnotationDbi BiocGenerics doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges lme4 Matrix S4Vectors]; };
Icens = derive { name="Icens"; version="1.41.0"; sha256="1vi2hnzs8z5prggswa6wzr2y53jczkgg09f4vw0pjzkzi7p8bphy"; depends=[survival]; };
IdMappingAnalysis = derive { name="IdMappingAnalysis"; version="1.13.0"; sha256="1kwalcvb7cxkg89kz5hpk0cvsfzxz5g2cbiflrs2dyaxx96pm5gm"; depends=[Biobase boot mclust R_oo rChoiceDialogs RColorBrewer]; };
IdMappingRetrieval = derive { name="IdMappingRetrieval"; version="1.17.0"; sha256="0fclrkv53q9aq3xw95k25rw52sjzy40r37kajnrk0kc41cyzf2vv"; depends=[AffyCompatible biomaRt DAVIDQuery ENVISIONQuery R_methodsS3 R_oo rChoiceDialogs RCurl XML]; };
IdeoViz = derive { name="IdeoViz"; version="1.3.0"; sha256="1ynqg2a0jq23mlqzgf7k05jc2nkby8hkbc6h0p76ms33fwqj2qxz"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; };
InPAS = derive { name="InPAS"; version="1.1.8"; sha256="1613zxc2i2jip8i4nx41wrkc59rvn3ycz1ixxi2lad94sjaznw3w"; depends=[AnnotationDbi Biobase BiocParallel BSgenome cleanUpdTSeq depmixS4 GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges limma preprocessCore S4Vectors seqinr]; };
IsoGeneGUI = derive { name="IsoGeneGUI"; version="2.5.0"; sha256="05k6qdnsr2aywdmhdlimx5axrk07mf14rvia10afhf56380sdf3s"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; };
KCsmart = derive { name="KCsmart"; version="2.27.0"; sha256="1igsmg1l39yladz4dlc9j01nxkwfaciy575d7k6764jhrs6pv39m"; depends=[BiocGenerics KernSmooth multtest siggenes]; };
KEGGREST = derive { name="KEGGREST"; version="1.9.1"; sha256="15qap9shrfzq4wz3spxbs1hp0wnj995j95jr6mb4izan6d3nhl6j"; depends=[Biostrings httr png]; };
KEGGgraph = derive { name="KEGGgraph"; version="1.27.2"; sha256="14giz5858nr1fz7fv0d98xnl8rmimnjq4n6s81b0pkiz4vsriqvn"; depends=[graph XML]; };
KEGGprofile = derive { name="KEGGprofile"; version="1.11.0"; sha256="04fkdsjj5z0ib6y8gi03av9b5zz4sbw277xvkr199kh9xlrfcqgh"; depends=[AnnotationDbi biomaRt KEGGREST png TeachingDemos XML]; };
LBE = derive { name="LBE"; version="1.37.0"; sha256="09ql13kc18b8zjvb3ny536k5704q9xxpv9xfqi4y4q32vavywj1x"; depends=[]; };
LEA = derive { name="LEA"; version="1.1.0"; sha256="017cz56xiv9c2v2q3lwnmpb4j7iz2k1aww6c9kz9s0kcjjyi3sak"; depends=[]; };
LMGene = derive { name="LMGene"; version="2.25.0"; sha256="17djx1fkjxpmmp56vphcbkgwpr56i375xc7rb76d94911grz9fh4"; depends=[affy Biobase multtest survival]; };
LOLA = derive { name="LOLA"; version="0.99.7"; sha256="1hal9cpna71sra24y0jjj2mvf62qsgmkb6ixwg1sbmka99a6rl8c"; depends=[data_table GenomicRanges IRanges reshape2]; };
LPE = derive { name="LPE"; version="1.43.0"; sha256="13z3h3mabbwhb5p40a7hil0aq10mya1zqgb8qj2qwnc50sbmgjx2"; depends=[]; };
LPEadj = derive { name="LPEadj"; version="1.29.0"; sha256="1734ihzvid5bz2wyh7yskk7agd82xmw7dibzb7aivhcfyxs8g8p4"; depends=[LPE]; };
LVSmiRNA = derive { name="LVSmiRNA"; version="1.19.0"; sha256="1z74y8zbg5amsmslb309gi630v8qa1qqgj37214bv5g9ab8xajmj"; depends=[affy Biobase BiocGenerics limma MASS quantreg SparseM vsn zlibbioc]; };
LedPred = derive { name="LedPred"; version="1.0.1"; sha256="17pfx1y2lfir7gb088266pn5jvv73vlzq1v9i44xqkhg0b5j21x5"; depends=[akima e1071 GenomicRanges irr jsonlite plot3D plyr RCurl ROCR testthat]; };
LiquidAssociation = derive { name="LiquidAssociation"; version="1.23.0"; sha256="178gx8n0ga1ppjk368xacidms1rc2kn301fmdc8rwbcknwvxrwck"; depends=[Biobase geepack]; };
LowMACA = derive { name="LowMACA"; version="1.1.5"; sha256="1qlmfx7qp30kjhvsxv5p2y8zjjsddb7bc195nvn2hci7nkqvb67l"; depends=[BiocParallel Biostrings cgdsr data_table motifStack RColorBrewer reshape2 stringr]; };
M3D = derive { name="M3D"; version="1.3.9"; sha256="1yikbn5vz8ba2xshdwpywriml51zlcmn2f7wk85shnar2bnhd33f"; depends=[BiSeq GenomicRanges IRanges]; };
MAIT = derive { name="MAIT"; version="1.3.1"; sha256="1kpcns5f9j41sg5694ng4d0w5gil2qwi9s1804gncnnh273jsv5z"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; };
MANOR = derive { name="MANOR"; version="1.41.1"; sha256="0i1fk4c72k91i0w84b0swgdbd4igvbcrbcs12dqqxcslnqg44rs2"; depends=[GLAD]; };
MBASED = derive { name="MBASED"; version="1.3.1"; sha256="0rdsv7qv5x6whb5jx4wzgcv88z6hwmf5ryz84liv7kg1i1pq1adn"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; };
MBAmethyl = derive { name="MBAmethyl"; version="1.3.0"; sha256="1807sv9dj74la17m2jj0kzj1sqy4gqydkxax0ngifvyk920zr19n"; depends=[]; };
MBCB = derive { name="MBCB"; version="1.23.0"; sha256="0swcr95qzgyjqpm6sc5z7ifc0vrj4hkpm7srfm2cb7d0dg0lk092"; depends=[preprocessCore tcltk2]; };
MCRestimate = derive { name="MCRestimate"; version="2.25.0"; sha256="1zbajax2kk4dnk17l6vm6rxgqyxm1zly3i7x0y78bbk34ismcixj"; depends=[Biobase e1071 pamr randomForest RColorBrewer]; };
MEDIPS = derive { name="MEDIPS"; version="1.19.5"; sha256="0xj9ia56xqc3ad0ikrfc0cvkwx1xssvymnyqk0p36yz90492pq1j"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; };
MEDME = derive { name="MEDME"; version="1.29.0"; sha256="1fpi4ri134ii28nfiq2p875xinwvs8icrxvw158g5k7ixy1zx826"; depends=[Biostrings drc MASS]; };
MEIGOR = derive { name="MEIGOR"; version="1.3.0"; sha256="1kif7m78w0w0qv4fqfby3rknqk56zk83dds3cm4pgv2cii61i9jy"; depends=[CNORode deSolve Rsolnp snowfall]; };
MGFM = derive { name="MGFM"; version="1.3.0"; sha256="1h2bi2cchfxl0z31pgj6q6pb1jnmqvjy7jv2khp80h7sdr65356i"; depends=[annotate AnnotationDbi]; };
MIMOSA = derive { name="MIMOSA"; version="1.7.1"; sha256="1gzm90ii18vvpfd2nnl34mcvbvi49ck4hd7c5yziac8m3gx2f9f2"; depends=[Biobase coda data_table Formula ggplot2 Kmisc MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; };
MLInterfaces = derive { name="MLInterfaces"; version="1.49.13"; sha256="0v80aghhws21ncdhgnmnvd94s8c48g5fypiryxpxm6yzj366jbdp"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter MASS mlbench pls RColorBrewer rda rgl rpart sfsmisc shiny threejs]; };
MLP = derive { name="MLP"; version="1.17.0"; sha256="1wb6bzxn1paba2fxh62ldsfr4kr0nq2sy21v0pp0qwhfxndyzpdn"; depends=[affy AnnotationDbi gdata gmodels gplots gtools plotrix]; };
MLSeq = derive { name="MLSeq"; version="1.7.0"; sha256="0vc5rz4l574hmzwn3q7c4giib0lzs720j0j3alvarb3lmfzx9mhq"; depends=[Biobase caret DESeq2 edgeR limma randomForest]; };
MMDiff = derive { name="MMDiff"; version="1.9.0"; sha256="0xvnv024cv540m0jv9lrb4s5rvc0mq4gwp6wvdgpnsnqnwi9j556"; depends=[Biobase DiffBind GenomicRanges GMD IRanges Rsamtools]; };
MPFE = derive { name="MPFE"; version="1.5.0"; sha256="123a6qg761j46bs1ckd6yyr2igdfx6mik3aj7a1dcqjqy5qrvx6r"; depends=[]; };
MSGFgui = derive { name="MSGFgui"; version="1.3.0"; sha256="0r7izs3wpd7l9agrm3mrr3kmm00s9fzljsjxhk4pzxkjg1ran4hp"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; };
MSGFplus = derive { name="MSGFplus"; version="1.3.0"; sha256="0q75mygrd56kr9hrrxlmckkgvhcrgvpgvbjdxjmz6jaqp5wfbkf5"; depends=[mzID]; };
MSnID = derive { name="MSnID"; version="1.3.1"; sha256="0a0r2ikyb0spm110xzn3zzhl8g6xsvmh781d65f10l1iqnd2cqza"; depends=[Biobase data_table doParallel foreach iterators MSnbase mzID ProtGenerics R_cache Rcpp reshape2]; };
MSnbase = derive { name="MSnbase"; version="1.17.15"; sha256="0fk7v88clnzcg779fs3g0nby8grck99gvx60pmpn4dxikyg75cdw"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp reshape2 S4Vectors vsn]; };
MSstats = derive { name="MSstats"; version="2.7.0"; sha256="0zhv2c769biv6avb4csi7alabk76bfn0ykzwp0lc6ymzggbj9pil"; depends=[ggplot2 gplots limma lme4 marray MSnbase preprocessCore Rcpp reshape]; };
MVCClass = derive { name="MVCClass"; version="1.43.0"; sha256="1mbhfkvdkxw9xd76dd2pxk947w9wahwdsk9x1wcryrmwcdvaqqcz"; depends=[]; };
MantelCorr = derive { name="MantelCorr"; version="1.39.0"; sha256="0l255m63q9idv56svs5m5bc4izwqnm3jy2z3kka7sw4xcx13l39g"; depends=[]; };
MassArray = derive { name="MassArray"; version="1.21.0"; sha256="0pz3azrjc7akqh63ijhxmfzainz8nwfffylz6610k1a7yxpaxb1h"; depends=[]; };
MassSpecWavelet = derive { name="MassSpecWavelet"; version="1.35.0"; sha256="1z2p9fdf57p3ryn25mn7ny910c8zrliw6jjwl34mjfp07kdf7hml"; depends=[waveslim]; };
MatrixRider = derive { name="MatrixRider"; version="1.1.0"; sha256="0mfhlwr84yrfan7y1p14n8f1rj3331d6vdrsib3b52ws5y25cabd"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; };
MeSHDbi = derive { name="MeSHDbi"; version="1.5.0"; sha256="1wcprr976jf9laah45jpmdx7aiy9f6vhamp5gk3npplr73i5m1ri"; depends=[AnnotationDbi Biobase RSQLite]; };
MeSHSim = derive { name="MeSHSim"; version="1.1.0"; sha256="0v7vh8z2ddaaabnkg6hmfw34xp0gbm5jml1lfxrqpw18sy7rypnv"; depends=[RCurl XML]; };
MeasurementError_cor = derive { name="MeasurementError.cor"; version="1.41.0"; sha256="11fkg2zxig0p5vws2a7avcwvn8c08qv3a665315ycainjsci7ay0"; depends=[]; };
MergeMaid = derive { name="MergeMaid"; version="2.41.0"; sha256="0zy3jsrc8chzmhfv7swp56imjhfc33dfzf32nmncq0731882m3mx"; depends=[Biobase MASS survival]; };
Metab = derive { name="Metab"; version="1.3.0"; sha256="041j2xn6gypg07l2snhqp940b682m30ra4iyla4dbqsncrailxpr"; depends=[pander svDialogs xcms]; };
MethTargetedNGS = derive { name="MethTargetedNGS"; version="1.1.0"; sha256="0bspvxxmyf22079sapmimz3fdxz91g4mq0kj7ssf0mmp2847l57k"; depends=[Biostrings gplots seqinr stringr]; };
MethylAid = derive { name="MethylAid"; version="1.3.1"; sha256="012ypjnw5ky6233dibx2hpryzbr66g86hm14cjfd45fzr08bv08z"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny]; };
MethylMix = derive { name="MethylMix"; version="1.3.0"; sha256="181sz3ny79i8gaq3y2k0q56l03ii288lhy8xv1fsh94bjhihjgcd"; depends=[doParallel foreach optimx RColorBrewer RPMM]; };
MethylSeekR = derive { name="MethylSeekR"; version="1.9.1"; sha256="0c560j1y8w8dzki53m499k2dknpbq2n78cmxg2nq4lqsdz8r17h4"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; };
Mfuzz = derive { name="Mfuzz"; version="2.29.3"; sha256="10qblp4xg6506f1j1v3n0k4m3f5hdrzv2m35szh0xdi2jxlc1m9k"; depends=[Biobase e1071 tkWidgets]; };
MiChip = derive { name="MiChip"; version="1.23.0"; sha256="0np5drks6nfg3aw8qm899syxv1z56608bhav1jid4ks9fwdi33bb"; depends=[Biobase]; };
MiPP = derive { name="MiPP"; version="1.41.0"; sha256="1zp8j123fx82xdc3dvn4a17mspw2pdxxlyj4f750vzwc4ma9pj39"; depends=[Biobase e1071 MASS]; };
MiRaGE = derive { name="MiRaGE"; version="1.11.1"; sha256="1nkvk07kgps9rzh362pczlsq0r7g8b85f4bdbi0ld5p0ijdd02f3"; depends=[AnnotationDbi Biobase BiocGenerics]; };
MineICA = derive { name="MineICA"; version="1.9.0"; sha256="0gfdnlahsm206vw443ml872dr1k5sg6w9hsdd3gkwzm0lsrxqd7x"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi marray mclust plyr RColorBrewer Rgraphviz scales xtable]; };
MinimumDistance = derive { name="MinimumDistance"; version="1.13.3"; sha256="1aha0ab1ki0ab6yaflqmjr19igkaqn84rlxk5h5j612y9qv04pvs"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; };
Mirsynergy = derive { name="Mirsynergy"; version="1.5.0"; sha256="0nbdnz3m99r3zlkqqya4xs944a3zy0daqxbnf5gn4033z2kgd10s"; depends=[ggplot2 gridExtra igraph Matrix RColorBrewer reshape scales]; };
MmPalateMiRNA = derive { name="MmPalateMiRNA"; version="1.19.0"; sha256="0pnbzqh90vqcgsh1swvhy8w2k1vj24k5j9m4sb7qwhi2h5y1gzwa"; depends=[Biobase lattice limma statmod vsn xtable]; };
MoPS = derive { name="MoPS"; version="1.3.0"; sha256="0sf7v7clghm48g2ryainsyvsl67nqq4xha71zc1r5w9fz33xa5mv"; depends=[Biobase]; };
MotIV = derive { name="MotIV"; version="1.25.1"; sha256="0hzkw2r64b0ihlyd4xn8pl37qkk3vaf8ll0500gayyhr60yj9y5f"; depends=[BiocGenerics Biostrings IRanges lattice rGADEM S4Vectors]; };
MotifDb = derive { name="MotifDb"; version="1.11.8"; sha256="135zjdvz2id6b6i09pvvc21pvqq7db6hgg293b674ck753rqyvmf"; depends=[BiocGenerics Biostrings IRanges rtracklayer S4Vectors]; };
Mulcom = derive { name="Mulcom"; version="1.19.0"; sha256="05mx5z188g7kwj7km9p54djjlf4kq4iwvf9fa8158ic5wd3ycyh7"; depends=[Biobase fields]; };
MultiMed = derive { name="MultiMed"; version="1.3.0"; sha256="16hi69kpxz6q71nr909pbqp5qa20z1qn367vjs7146mpfn70rnwq"; depends=[]; };
NCIgraph = derive { name="NCIgraph"; version="1.17.0"; sha256="103p0i4y9frkvdpzhpj9c0d78wc40650hbhfbhhmkv1a8zq5260v"; depends=[graph KEGGgraph R_methodsS3 RBGL RCytoscape]; };
NGScopy = derive { name="NGScopy"; version="1.3.0"; sha256="09b323rx0v5dnck2dgq9rzzjk7dbpry74q6c4dkgvjvxkf7khh8m"; depends=[changepoint rbamtools Xmisc]; };
NOISeq = derive { name="NOISeq"; version="2.13.0"; sha256="1gih1n0fm6yllh01kkh3n5qzckcr00sbz4s0fx961qsghqyqzij1"; depends=[Biobase Matrix]; };
NTW = derive { name="NTW"; version="1.19.0"; sha256="027rdvy8xpsa70g6x33v4fmzk8gyvd8p3lgf65ac36wcy120gyhl"; depends=[mvtnorm]; };
NanoStringDiff = derive { name="NanoStringDiff"; version="0.99.4"; sha256="01wjvhx4bx1xc3ks33pkbz80a7fjj4yvllry433asnysziihn6lw"; depends=[Biobase matrixStats]; };
NanoStringQCPro = derive { name="NanoStringQCPro"; version="1.1.2"; sha256="1xk7rzaschgb39982jkb25xaz1l547dl020nl4wn0fdmy8kalp86"; depends=[AnnotationDbi Biobase knitr NMF png RColorBrewer]; };
NarrowPeaks = derive { name="NarrowPeaks"; version="1.13.4"; sha256="1s68l00jkb91nb45n5kpvkpcdhj2v740ac3p0q9gxg5925jwvyaa"; depends=[BiocGenerics CSAR fda GenomeInfoDb GenomicRanges ICSNP IRanges S4Vectors]; };
NetPathMiner = derive { name="NetPathMiner"; version="1.5.2"; sha256="0k3vq5l95hapw8hbc00m4pchxwzylp97y20w21g0g1yaf1cf9br0"; depends=[igraph]; };
NetSAM = derive { name="NetSAM"; version="1.9.0"; sha256="1bdch37kk1clb8cyffrlcr6d5qykk5a5ql3dfi94bw1l0w6v4fjq"; depends=[graph igraph seriation]; };
NormqPCR = derive { name="NormqPCR"; version="1.15.0"; sha256="0nfjnx5id04nbkda9v66418yzpp88mq2ijsfn8jyg0sfika405nl"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; };
NuPoP = derive { name="NuPoP"; version="1.19.0"; sha256="1dpqmhbwr1l95vgjxlw3xayjxksa909xj05jbf4x3gafnlkkdvbk"; depends=[]; };
OCplus = derive { name="OCplus"; version="1.43.0"; sha256="1x7yqb6hkbglvr0kkq5s7caxambdvzc0f38gahq68wfsfwln7b49"; depends=[akima multtest]; };
OGSA = derive { name="OGSA"; version="0.99.7"; sha256="03iqpsp1864605yjc7ji064dkiia8y7m66jyi1mskha7hk5mqk5x"; depends=[Biobase gplots limma]; };
OLIN = derive { name="OLIN"; version="1.47.0"; sha256="19wjz96104rn88pdflixb790qhj24ff4s3hc09ldcii1pfzm0sdw"; depends=[limma locfit marray]; };
OLINgui = derive { name="OLINgui"; version="1.43.0"; sha256="0714bzbsmd7bsdm5zk05g83yy48z3rlazpv17xbn38ljpykawzjb"; depends=[marray OLIN tkWidgets widgetTools]; };
OSAT = derive { name="OSAT"; version="1.17.0"; sha256="1ky9xb5ls3xnzinsrxrgggb4r0fmm1q33vxb3ajav7nygyxijq0d"; depends=[]; };
OTUbase = derive { name="OTUbase"; version="1.19.0"; sha256="0xmp446v57z875lmjkg47f9hx961af9nda658v8qlbjxf1wjw9zb"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; };
OmicCircos = derive { name="OmicCircos"; version="1.7.0"; sha256="1xil5043hgpypaww1a1wvcxw9im9jmzgdp83p3z71giqiq36dvh4"; depends=[GenomicRanges]; };
OmicsMarkeR = derive { name="OmicsMarkeR"; version="1.1.2"; sha256="09mdsvcp7n5qh845lpa1zsjk7jmbi0ni0601jlr1jija0hmkv1zx"; depends=[assertive assertive_base caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; };
OncoSimulR = derive { name="OncoSimulR"; version="1.99.7"; sha256="1pav3vn94cly0d1sg7rw35mf4wvgcn70pa9hglggchgq636iyja6"; depends=[data_table graph gtools igraph Rcpp Rgraphviz]; };
OperaMate = derive { name="OperaMate"; version="0.99.6"; sha256="0xh57d82rmfcs1a6gj0qcjf585drhzns5k69bwxb7x1xw63wp4kp"; depends=[ggplot2 MASS pheatmap RDAVIDWebService]; };
OrderedList = derive { name="OrderedList"; version="1.41.0"; sha256="1cw8y5f5h15z0qwg8n4dq7g3ixx2wa332rdsb4w2qqmcqlz79bfp"; depends=[Biobase twilight]; };
OrganismDbi = derive { name="OrganismDbi"; version="1.11.42"; sha256="0y0v5ngall7iyvx2bqhfkxdnw9alkyab5f6qgpq8dpvr6pvyamyl"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller GenomicFeatures GenomicRanges graph IRanges RBGL RSQLite S4Vectors]; };
Oscope = derive { name="Oscope"; version="0.99.1"; sha256="0kv586yv17cf61jnvglsr08175dq0qz5zif8xflnliac9whj7yvf"; depends=[BiocParallel cluster EBSeq testthat]; };
OutlierD = derive { name="OutlierD"; version="1.33.0"; sha256="0bljxmrnlqcngzzv6yxjsim7gd4icyi384vimn5gs869mq9gyrj3"; depends=[Biobase quantreg]; };
PAA = derive { name="PAA"; version="1.3.3"; sha256="1v5gw9f2glzsz05kqyvvhwzfdfj4ypwbfgy5q16lr1y64slabzq2"; depends=[e1071 limma MASS mRMRe randomForest Rcpp ROCR sva]; };
PADOG = derive { name="PADOG"; version="1.11.0"; sha256="0x84k32fmd1zrwjc4f71mq4jslh9bxr4gjbl48k1f5kl5j6hlxj3"; depends=[AnnotationDbi Biobase doRNG foreach GSA limma nlme]; };
PANR = derive { name="PANR"; version="1.15.0"; sha256="0nc2a10z7i16dz41yhz3zw9h51myxzxbxd1vpc2d8gczks07n6ch"; depends=[igraph MASS pvclust RedeR]; };
PAPi = derive { name="PAPi"; version="1.9.0"; sha256="1553fxm3ma3p5j10acyk5m2wx4dafp346x0pyxj9aah856h4zkw5"; depends=[KEGGREST svDialogs]; };
PAnnBuilder = derive { name="PAnnBuilder"; version="1.33.0"; sha256="0larxmdzdb33hpv2m7n4kdjkmmc7pn8dl0b1x43fl54dq5xwvzpg"; depends=[AnnotationDbi Biobase DBI RSQLite]; };
PCpheno = derive { name="PCpheno"; version="1.31.0"; sha256="1crk56kzfb9smdaagv44l7h2hh1qc15zyl1rjnwlyz8cxplsll7w"; depends=[annotate AnnotationDbi Biobase Category graph GSEABase ppiStats ScISI SLGI]; };
PECA = derive { name="PECA"; version="1.5.3"; sha256="0272m7q1s87sgnxpyph2igli49fnda1865vxnc7dsblhj69q4k5k"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore]; };
PGA = derive { name="PGA"; version="0.99.11"; sha256="1dhp7nd5kns5p5n8yp9g48307difivfspb13vvgfmd7y8iyqmv35"; depends=[AnnotationDbi biomaRt Biostrings customProDB data_table GenomicFeatures GenomicRanges ggplot2 IRanges Nozzle_R1 pheatmap RCurl Rsamtools RSQLite rTANDEM rtracklayer stringr VariantAnnotation]; };
PGSEA = derive { name="PGSEA"; version="1.43.0"; sha256="0bchcpb3ma179akjaf4agsbvx3f8vp73qxrqlq3ls25j9c1acbl5"; depends=[annaffy AnnotationDbi Biobase]; };
PICS = derive { name="PICS"; version="2.13.0"; sha256="0mc49s5qq2jlc5alba38fyr60p18lad3q6wn48a5khzfkwdbjm9s"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; };
PING = derive { name="PING"; version="2.13.0"; sha256="0fghsvanq6r3ndp9vc2zwvfizifw2yl8qjhzv5rl5hkpsb7w9y2d"; depends=[BiocGenerics BSgenome chipseq fda GenomicRanges Gviz IRanges PICS S4Vectors]; };
PLPE = derive { name="PLPE"; version="1.29.0"; sha256="17x48ygk0z5pzlpad950csc5jl46h4rrpifd7l0vni2wkv1wxvy9"; depends=[Biobase LPE MASS]; };
PREDA = derive { name="PREDA"; version="1.15.0"; sha256="0ls2wlldgmzihfllz4gjhsrr39mjnbp1gpkj4dbr3411cfzd087s"; depends=[annotate Biobase lokern multtest]; };
PROMISE = derive { name="PROMISE"; version="1.21.0"; sha256="0k3xr0x5xw1jpm8w1hf0pwddf864myn048lg5mba70f6irx9s2qn"; depends=[Biobase GSEABase]; };
PROPER = derive { name="PROPER"; version="1.1.0"; sha256="1h75zcz3b048760dlhlnvwvwhqfihyl6k3fwqq50b9sh698vbf8z"; depends=[edgeR]; };
PROcess = derive { name="PROcess"; version="1.45.0"; sha256="1d5kg0r3ddf4bjcmjdd84r92d1cx6xjgk0a303mwsbyp6b7qs06i"; depends=[Icens]; };
PSEA = derive { name="PSEA"; version="1.3.0"; sha256="13v4q6qxvplvln7ff378chff4z4ppc51wpaq8fz7hxpl0g60cfqm"; depends=[Biobase MASS]; };
PSICQUIC = derive { name="PSICQUIC"; version="1.7.0"; sha256="0c7v2zm5rrn8ma2kmwpffq2qgipi537fbi1gjhx7yvmnqw9zcjnc"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; };
PWMEnrich = derive { name="PWMEnrich"; version="4.5.5"; sha256="0ff7wm9lqgwddypdnmf3waf8wzmfyfphmqn8nmnayl3r2fxlbbnn"; depends=[BiocGenerics Biostrings evd gdata seqLogo]; };
Path2PPI = derive { name="Path2PPI"; version="0.99.4"; sha256="1w00b8l94ajjinihwxjncn98m8ww9pw5gcan7paf26plcsg8z219"; depends=[igraph]; };
PathNet = derive { name="PathNet"; version="1.9.0"; sha256="1dqai2ys5vfhhqqghh1xaxsbcbsqwkjrcrhsm03r3ckpizmbynp5"; depends=[]; };
Pbase = derive { name="Pbase"; version="0.9.0"; sha256="1j0b2ajlsk42kxakh4vhcd9ias1fxr4cna4h52hrinxi9jml9ywx"; depends=[Biobase BiocGenerics biomaRt Biostrings cleaver GenomicRanges Gviz IRanges MSnbase mzID mzR Pviz Rcpp rtracklayer S4Vectors]; };
PhenStat = derive { name="PhenStat"; version="2.3.1"; sha256="059vs4ggwww2d0nnl4cfvp0q9zb5lhbphzkd71mhkmjdb6ilq411"; depends=[car logistf MASS nlme nortest]; };
Polyfit = derive { name="Polyfit"; version="1.3.0"; sha256="0zdd85bshdcf85asq93wbbrj26fa5d6xkmgdyrqg9hawdznj9kip"; depends=[DESeq]; };
Prize = derive { name="Prize"; version="0.99.16"; sha256="0bm93kipmyypqsp17f316k83gwrfpzqjqhlf44kmb5ris5s1fdyb"; depends=[diagram ggplot2 gplots matrixcalc reshape2 stringr]; };
ProCoNA = derive { name="ProCoNA"; version="1.7.0"; sha256="1x2wmlhlizd09v4d7q98cfplqqmxcagi43rl9ibdah04n7k35zpd"; depends=[BiocGenerics flashClust GOstats MSnbase WGCNA]; };
ProtGenerics = derive { name="ProtGenerics"; version="1.1.0"; sha256="1l77j3zl78v86jbxpwnyc0a5q66yds79nirlcvan789hxbggr0i4"; depends=[BiocGenerics]; };
ProteomicsAnnotationHubData = derive { name="ProteomicsAnnotationHubData"; version="0.99.2"; sha256="0vi83sx4y73q70adwzc83d1smd6j6b30sy6kq3ss47vwk7qxd7ki"; depends=[AnnotationHub AnnotationHubData Biobase BiocInstaller Biostrings GenomeInfoDb MSnbase mzR]; };
Pviz = derive { name="Pviz"; version="1.3.0"; sha256="0pvmpxw4dpxxs9lrn9nn44rn36r3l09rwlkh5ph054h56nm80xs1"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; };
QDNAseq = derive { name="QDNAseq"; version="1.5.4"; sha256="1j7dv5iz6x6mm7dar37lkj2ss5xg4qi5yxrklll3hxl1vn4fc715"; depends=[Biobase CGHbase CGHcall DNAcopy matrixStats R_utils Rsamtools]; };
QUALIFIER = derive { name="QUALIFIER"; version="1.13.1"; sha256="0b25cgjafs3k2kwbmbla713gxy9xbjclsx6k4pxydz5flz8w8grg"; depends=[Biobase data_table flowCore flowViz flowWorkspace hwriter lattice latticeExtra MASS ncdfFlow reshape XML]; };
QuartPAC = derive { name="QuartPAC"; version="1.1.0"; sha256="0w92hggwihp2nia9dzg8yjbfsyrcgwq4kpxh96jb8kkmq6kl2l8p"; depends=[data_table GraphPAC iPAC SpacePAC]; };
QuasR = derive { name="QuasR"; version="1.9.15"; sha256="18z66a167fakvss45g3h13jc36ggb7hiqd2c9896c5amg1qli8n3"; depends=[Biobase BiocGenerics BiocInstaller BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rsamtools rtracklayer S4Vectors ShortRead zlibbioc]; };
R3CPET = derive { name="R3CPET"; version="1.1.0"; sha256="0vwyrqsihnabzqh5r329v3f5zcg2ik51aakvscpp482z0dm2naqh"; depends=[clues clValid data_table DAVIDQuery GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp reshape2 S4Vectors]; };
R453Plus1Toolbox = derive { name="R453Plus1Toolbox"; version="1.19.1"; sha256="0fp8hx9igfjaj1dvfxs54r5krhsp1hbmlqs9vac3g6ga51268rir"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; };
RBGL = derive { name="RBGL"; version="1.45.1"; sha256="0y90pvl3i8pyzxwssciygcd1c1lb8a0rqhpiqgif56075amm71rl"; depends=[graph]; };
RBM = derive { name="RBM"; version="1.1.0"; sha256="03q7prkrj8y3k8jrnnbjrkmlyv72cxfa8l042df4wajhcbpa4g4l"; depends=[limma marray]; };
RBioinf = derive { name="RBioinf"; version="1.29.0"; sha256="1cyd18lz3h9b20g6s9azzv9rv9bachh3qsczz84y8lj4kay3qssx"; depends=[graph]; };
RCASPAR = derive { name="RCASPAR"; version="1.15.2"; sha256="151mil4v8iz5lrn7827imvvnjh171qdgjg927fic3fwyfx0kkyqs"; depends=[]; };
RCyjs = derive { name="RCyjs"; version="1.1.29"; sha256="153p97865xfys2plypa7b6176i4vfxwfpyrncvdzc9mhi8gsal0v"; depends=[BiocGenerics BrowserViz graph httpuv igraph jsonlite Rcpp]; };
RCytoscape = derive { name="RCytoscape"; version="1.19.0"; sha256="0yfmlksi7sz0p9nbgjz2cpqwbwyzzxij3zaqmkp3wqfdk89mxgi7"; depends=[BiocGenerics graph]; };
RDAVIDWebService = derive { name="RDAVIDWebService"; version="1.7.0"; sha256="07hnj7flfacg9j8c6155nw23zjxcb1v4wj4rkfi8xz5clp80v6xh"; depends=[Category ggplot2 GOstats graph RBGL rJava]; };
RDRToolbox = derive { name="RDRToolbox"; version="1.19.0"; sha256="186cj6xri4prv7y9jvspyql8mkqy3aqs2kd6m5fliqicqbfia2z8"; depends=[MASS rgl]; };
REDseq = derive { name="REDseq"; version="1.15.0"; sha256="1xgc0xir09n900dgnpg5cibyxqsk0llh3jqqzgghm672rinbx2c6"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome ChIPpeakAnno IRanges multtest]; };
RGSEA = derive { name="RGSEA"; version="1.3.0"; sha256="1z69ccc6kxmfy1lc4jfnf36b305n8zizzc1sdjxkh43swiivs64k"; depends=[BiocGenerics]; };
RGalaxy = derive { name="RGalaxy"; version="1.13.0"; sha256="082zmqxqzk0wawrp36ds4sh30zf48pbs3pgsrn5b0j5w3lr1dy1x"; depends=[Biobase BiocGenerics digest optparse roxygen2 XML]; };
RIPSeeker = derive { name="RIPSeeker"; version="1.9.3"; sha256="0m5pmc2a1kbiafcv9w40vadqcphwkk2rq5gha5r66v2zxf3c7cbp"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer SummarizedExperiment]; };
RLMM = derive { name="RLMM"; version="1.31.0"; sha256="01plzmxz5dzvvxzx4wxsqhhypc8fyvkyr96c7xwsaaakah4780nk"; depends=[MASS]; };
RMassBank = derive { name="RMassBank"; version="1.11.0"; sha256="1df5kfm4gb5kz1z5sq38wddi4njq3y8nzy7fr2dxk1z2j4b1977z"; depends=[mzR rcdk Rcpp RCurl rjson XML yaml]; };
RNASeqPower = derive { name="RNASeqPower"; version="1.9.0"; sha256="0nn5wq81cm81wjwc43ky597fyq1l4ya36k64bp6k80ri94qx2vzg"; depends=[]; };
RNAinteract = derive { name="RNAinteract"; version="1.17.0"; sha256="03rz6xyy9f48ns0r9xcxrghikxlna8cx62rwswq2i1xkh7c5lfiy"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; };
RNAither = derive { name="RNAither"; version="2.17.2"; sha256="01h9l5inafhzpych76rpkrml442ld6jaxrd31ambspn9hsv8js6z"; depends=[biomaRt car geneplotter limma prada RankProd splots topGO]; };
RNAprobR = derive { name="RNAprobR"; version="1.1.4"; sha256="1zw74kajgcg0j36hcvx61gqv9a8xyqgybnm3pgshd1yrmrv3vpc4"; depends=[BiocGenerics Biostrings GenomicAlignments GenomicFeatures GenomicRanges plyr Rsamtools rtracklayer]; };
ROC = derive { name="ROC"; version="1.45.0"; sha256="1vcv5q7ylr2b1fb4vmrc8j4j7s3v5szzpkwblnfkcp2y8d03i9a1"; depends=[]; };
ROntoTools = derive { name="ROntoTools"; version="1.9.1"; sha256="1r390zmp99cjcpcxhx8xrdkgynrhcaip9padh4qj3fvzikfb83c6"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; };
RPA = derive { name="RPA"; version="1.25.0"; sha256="1bzjb0064xdn5zk9y9dpxjdw79i8kkfb29f13balx78nq5xznxh4"; depends=[affy]; };
RRHO = derive { name="RRHO"; version="1.9.1"; sha256="0lkmg40lwc3v6njalm2a2i3h9cc5iqifqj0ji20mxvk2bgpaj7p6"; depends=[VennDiagram]; };
RSVSim = derive { name="RSVSim"; version="1.9.1"; sha256="096zfl3glpwa38f2n6cxxcl4a9saf7mfy13g0p2cxq5vfkikab0h"; depends=[Biostrings GenomicRanges IRanges ShortRead]; };
RTCA = derive { name="RTCA"; version="1.21.0"; sha256="1kpfmrjcwmzgih0vib9ckf4c00yax0fbklfi46cwx0avv54gaqs0"; depends=[Biobase gtools RColorBrewer]; };
RTCGA = derive { name="RTCGA"; version="0.99.12"; sha256="1xbk2vx6va46sjlh670w38zarfpmzzhvhf6i7sx3cr6nlh6if7q2"; depends=[assertthat data_table knitr magrittr rvest stringi XML xml2]; };
RTCGAToolbox = derive { name="RTCGAToolbox"; version="1.99.4"; sha256="1s78mll5907bpwca0zzhp19p328gwxc88wg98fjk710i0lx67gbi"; depends=[data_table limma RCircos RCurl RJSONIO survival XML]; };
RTN = derive { name="RTN"; version="1.7.2"; sha256="0k0xwnk0vgbi86435m5rhv2sxdnzwmhgr85zb8dlffr68dqa66ih"; depends=[car data_table ff igraph IRanges limma minet RedeR snow]; };
RTopper = derive { name="RTopper"; version="1.15.0"; sha256="1bjrrljidnij9zhq6lqsdi6hr35pih2kwwwd5cgmwfff8nfx60kw"; depends=[Biobase limma multtest]; };
RUVSeq = derive { name="RUVSeq"; version="1.3.4"; sha256="0fm8lpyxjifnxkzp2dvdcvparli1dc2xw44911sbmlvj0ys4j4x4"; depends=[Biobase EDASeq edgeR MASS]; };
RUVcorr = derive { name="RUVcorr"; version="1.1.0"; sha256="1pgsfm17gnqwa9sr19f15h0nx1fhyjj07yhmpwr7s6p3v46qdw33"; depends=[BiocParallel corrplot gridExtra lattice MASS psych reshape2 snowfall]; };
RUVnormalize = derive { name="RUVnormalize"; version="1.3.0"; sha256="1fqk68rpznz9xc7ricipvrk1anppa33h9m5yv65fjwv4q1d05265"; depends=[Biobase]; };
RWebServices = derive { name="RWebServices"; version="1.33.1"; sha256="1bxp4zj7r1lrxb7r7l32h6b8hdxb1ryf7dxxj0qhwimh7pmxln31"; depends=[RCurl SJava TypeInfo]; };
RamiGO = derive { name="RamiGO"; version="1.15.0"; sha256="1q9f2ii5b1xway407gzfpzz6vm6an8p13vmgkw7vb9rldxn85hab"; depends=[graph gsubfn igraph png RCurl RCytoscape]; };
RankProd = derive { name="RankProd"; version="2.41.0"; sha256="05r8mrgnpfkd7yhcch7nrn9jbapfhvi67h0z9a9nlxlp44mz0qq7"; depends=[]; };
RareVariantVis = derive { name="RareVariantVis"; version="1.0.3"; sha256="1wc2rb80xvwbnsc93fl04cf6y74qpwhhi4172whxb6affq2682cq"; depends=[BiocGenerics GenomeInfoDb GenomicRanges googleVis IRanges S4Vectors VariantAnnotation]; };
Rariant = derive { name="Rariant"; version="1.5.0"; sha256="1xwy2xrdk1m1mscnql8cp3az1jx639a9w4mb8bz7jf62z4z4npsi"; depends=[dplyr exomeCopy GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges reshape2 Rsamtools S4Vectors shiny SomaticSignatures VariantAnnotation VGAM]; };
RbcBook1 = derive { name="RbcBook1"; version="1.37.0"; sha256="03q82zjd725w585rgdn9mbx7ddsv1kdxylsndh26csz573j2myhh"; depends=[Biobase graph rpart]; };
Rbowtie = derive { name="Rbowtie"; version="1.9.0"; sha256="02wc0pzw9vm1mc7y84ic79jjdi1mh77v8h4gk2pl117pdkgg7nl7"; depends=[]; };
Rcade = derive { name="Rcade"; version="1.11.0"; sha256="0dqhir9nkkhga3zll4jv9nc4k2kaggxkks2whfw581k9akj1v7x1"; depends=[baySeq GenomicRanges plotrix rgl Rsamtools S4Vectors]; };
Rchemcpp = derive { name="Rchemcpp"; version="2.7.1"; sha256="11kj3x6vlwns6wx6sr4iwhh2fz2ab6205cj48gayc5753lhqi44m"; depends=[ChemmineR Rcpp]; };
RchyOptimyx = derive { name="RchyOptimyx"; version="2.9.0"; sha256="1l84zzd4xpz409gl3d3j5ssddgx3i6ik5hqsdggyvnvf1nb2yavn"; depends=[flowType graph Rgraphviz sfsmisc]; };
Rcpi = derive { name="Rcpi"; version="1.5.0"; sha256="1ap4i41iy9r6xl0dhlry6yz28g5blb057vvddx6ysphaq9gwx6rp"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; };
Rdisop = derive { name="Rdisop"; version="1.29.0"; sha256="0j40i96k6q94c3238gl3z9kp9dxv00133m9s4zx28z17ayz00h69"; depends=[Rcpp RcppClassic]; };
ReQON = derive { name="ReQON"; version="1.15.1"; sha256="147fywvb9f9gjg3ij3sh753fs6mkr9b3f1c9j4gws1hmc6ryyn3m"; depends=[rJava Rsamtools seqbias]; };
ReactomePA = derive { name="ReactomePA"; version="1.13.5"; sha256="0lfhn3xhxgwa59ajyw295y6q9d7r5cbkp7gfn87vp9mkv3s81ryr"; depends=[AnnotationDbi DOSE graphite igraph]; };
ReadqPCR = derive { name="ReadqPCR"; version="1.15.0"; sha256="063swfh992gmibvr9ffsh65i57fdl651gpc39b2y6k9dp2rx8is7"; depends=[affy Biobase]; };
RedeR = derive { name="RedeR"; version="1.17.0"; sha256="13fmv76jrzxsa1ykzl85zwj0zb3aycyvc5s3h60vlgawfw66z90h"; depends=[igraph RCurl XML]; };
RefNet = derive { name="RefNet"; version="1.5.0"; sha256="0dzkvrpphbajpcwc3gdqi8lmwfg8a3rljhdnwswvbjg2vraj48s2"; depends=[AnnotationHub BiocGenerics IRanges PSICQUIC RCurl shiny]; };
RefPlus = derive { name="RefPlus"; version="1.39.0"; sha256="049nv5jhcl26vgvimgd6s7832vd6q2rn7h6pmc8wd6844vv7sx2n"; depends=[affy affyPLM Biobase preprocessCore]; };
Repitools = derive { name="Repitools"; version="1.15.1"; sha256="00jjhxib1whn6dv7cilvdglppkqlafm5wvsg89r2hyrh8l6f2a2b"; depends=[aroma_affymetrix BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; };
ReportingTools = derive { name="ReportingTools"; version="2.9.1"; sha256="05p005092xm2qjz9b60562q69avphgrr8x7iac24pvnbywn1j7q2"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma R_utils XML]; };
Rgraphviz = derive { name="Rgraphviz"; version="2.13.0"; sha256="08apr3v2h5jwah96c2596ggz7xaz41k5zywcqsjm6g8xhd3hs522"; depends=[graph]; };
Rhtslib = derive { name="Rhtslib"; version="1.1.8"; sha256="1n6mimlkyaxcfwfr4hclmch3h14qaffakkd899p9fwlf1d60j9xw"; depends=[zlibbioc]; };
Ringo = derive { name="Ringo"; version="1.33.0"; sha256="12qh3aayy317pzb137ds9vqrrwn93c4l4fdcl6yyp8p4fqpki03j"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; };
Risa = derive { name="Risa"; version="1.11.1"; sha256="1bx7n7fjsaig5zq6xgwva2fvy0dlg9f1niwl9m6bi1h04spybp2c"; depends=[affy Biobase biocViews Rcpp xcms]; };
Rmagpie = derive { name="Rmagpie"; version="1.25.0"; sha256="13mb9aaqmwx1ad4mk0fhxqfql8pjpyaiibip7jawiyji7ghp9iw7"; depends=[Biobase e1071 kernlab pamr]; };
RmiR = derive { name="RmiR"; version="1.25.0"; sha256="1xc19w8la239ia793qpnpx2h0aavwhidrjf4i87jry2j29npjfzz"; depends=[DBI RSVGTipsDevice]; };
RnBeads = derive { name="RnBeads"; version="1.1.8"; sha256="16rz6akm2jkbxnga7g2dvqaiwy4zgmfc031p1ir75qfzwpwmcrjj"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr RColorBrewer]; };
RnaSeqSampleSize = derive { name="RnaSeqSampleSize"; version="1.1.0"; sha256="0q2w1yd5p9k3pls6ki8yci3r2v4rxi3iy4zk5mafmr7ip0q1rwpp"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp]; };
Rnits = derive { name="Rnits"; version="1.3.0"; sha256="0hxll8hlv5nc6vijznhzmvbjh1hxmfy9shm2g8al291yi0gfdmk3"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; };
Roleswitch = derive { name="Roleswitch"; version="1.7.0"; sha256="01b21yyg0d2v10abcbw08zhswh9nb7wj7s3x5kcaaas7671f06ha"; depends=[Biobase biomaRt Biostrings DBI microRNA plotrix pracma reshape]; };
Rolexa = derive { name="Rolexa"; version="1.25.0"; sha256="1qrf7byimw9s5jp15zmwqk95x34r3yx2npr46gwf1zih06n7kc05"; depends=[Biostrings IRanges mclust ShortRead]; };
RpsiXML = derive { name="RpsiXML"; version="2.11.0"; sha256="0rvma7vynfh5sjhqnbpagilq54dh0wrvvb3jzykwmrak0dbyk7zh"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; };
Rqc = derive { name="Rqc"; version="1.3.3"; sha256="1iaj0cvsiw0irvrlcrbsfj29jzgvwij5r1sbaxbx70s3wdai5vrn"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase digest GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; };
Rsamtools = derive { name="Rsamtools"; version="1.21.18"; sha256="17drdvc3j1h3yrka5j87lqixmcwk29rp7zjc1cspp8692qbh7ggm"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; };
Rsubread = derive { name="Rsubread"; version="1.19.5"; sha256="17lnvmkx011i1lq6m9fpgm340b64lsay1mvqaiac2m690siw4pii"; depends=[]; };
Rtreemix = derive { name="Rtreemix"; version="1.31.0"; sha256="1z08y8qhc3sv4pwvji4pks46hxpcpwb9yx8y0927bc96a8mqgax4"; depends=[Biobase graph Hmisc]; };
S4Vectors = derive { name="S4Vectors"; version="0.7.18"; sha256="0jz2hy7a21yd8cgq87xdxvb89747sqp1vrjka1rs1c39r78ryzg9"; depends=[BiocGenerics]; };
SAGx = derive { name="SAGx"; version="1.43.0"; sha256="111pgl7rzmscgadkbivwa736gpyw1z7zkcj648zq3jhqix569dvd"; depends=[Biobase multtest]; };
SANTA = derive { name="SANTA"; version="2.6.0"; sha256="0zx9azk7j82bzq424rf42nsaw05qyfgzdsy38h6r352mfbmip2dl"; depends=[igraph Matrix snow]; };
SBMLR = derive { name="SBMLR"; version="1.65.0"; sha256="1nmw5c32ka6l12cid54mc4diahjhmyg6fngsd646v70rbzgffn7q"; depends=[deSolve XML]; };
SCAN_UPC = derive { name="SCAN.UPC"; version="2.11.1"; sha256="1p1kph38vda29241fka9mglqasnz20gclcbhc6c4c144vmyivsqh"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; };
SELEX = derive { name="SELEX"; version="1.1.0"; sha256="13v2aqphpblwslbnm9yk9lfg31vrc3lz9ds4m8j7584iszmlgnar"; depends=[Biostrings rJava]; };
SEPA = derive { name="SEPA"; version="0.99.0"; sha256="1mc44amd39x1dvl0kamhbsn2cplg7h5j5v5y2lv1gminfl4xs0sw"; depends=[ggplot2 reshape2 segmented shiny topGO]; };
SGSeq = derive { name="SGSeq"; version="1.3.20"; sha256="13gl52bypn9gf9ya39mw6ajmbpgbpa0k5x7d6l0bld4c0zji07ik"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; };
SIM = derive { name="SIM"; version="1.39.0"; sha256="1r08h5hkciycv4lh998vm742flim07plysgjvrq9dp4c5q4qrzr5"; depends=[globaltest quantreg quantsmooth]; };
SIMAT = derive { name="SIMAT"; version="1.1.5"; sha256="074r9fyrgkay1xr0i3ps1sn7n24y26w595nssy7bryrvhhd8izbr"; depends=[ggplot2 mzR Rcpp reshape2]; };
SJava = derive { name="SJava"; version="0.95.1"; sha256="1cl0qybi71srf1ggawxdy128kz8crn8if4yi8c2m6w9ppah9m763"; depends=[]; };
SLGI = derive { name="SLGI"; version="1.29.0"; sha256="0jhi3nmgnqf8qix90kpz8gqibqvyp02ca07aka7npqls24d3i96f"; depends=[AnnotationDbi Biobase BiocGenerics lattice ScISI]; };
SLqPCR = derive { name="SLqPCR"; version="1.35.0"; sha256="1p35xgwf3i8ksznz1gi3bddj0816hdljamcb7smdrq0md5fqmpzb"; depends=[]; };
SMAP = derive { name="SMAP"; version="1.33.0"; sha256="0znl289fclws2vnqgpjnrl8b0s5q4cna3ps3il5783vr64ir88cg"; depends=[]; };
SNAGEE = derive { name="SNAGEE"; version="1.9.0"; sha256="0sn5b8ah9idbz63y1rjx8brz3h58zvh2sk59l4i48nvrm38g169r"; depends=[]; };
SNPRelate = derive { name="SNPRelate"; version="1.3.11"; sha256="0hcb180rli25gxsh0jwazv4l10hhsfhypy2rz5fvqqq8caja5adv"; depends=[gdsfmt]; };
SNPchip = derive { name="SNPchip"; version="2.15.2"; sha256="1px5ifdsly1z8iwd22vj2xb4pk5jhsa3h2z31scw37b0v4daks50"; depends=[Biobase foreach GenomeInfoDb GenomicRanges IRanges lattice oligoClasses SummarizedExperiment]; };
SPEM = derive { name="SPEM"; version="1.9.0"; sha256="09klaxlz1ff77jhjsr95g3s4b5m285zf3fl9w4mv5pc8r1viqplf"; depends=[Biobase Rsolnp]; };
SPIA = derive { name="SPIA"; version="2.21.0"; sha256="0v8m9wfl2kqzzl3k0v7lr7g33ymdnmqi9r2fqyb42mggpq5pwxlm"; depends=[KEGGgraph]; };
SQUADD = derive { name="SQUADD"; version="1.19.0"; sha256="0xss3vhn6471z44gd44i8j5bni8471nb1sq3cx99f2gyk817nxp8"; depends=[RColorBrewer]; };
SRAdb = derive { name="SRAdb"; version="1.27.0"; sha256="0q3gajafsnyzshlf6867v82hzgl4k0yxfm9ilf3054pr75lagn5g"; depends=[GEOquery graph RCurl RSQLite]; };
SSPA = derive { name="SSPA"; version="2.9.0"; sha256="1kkvj3s2l6zzvv6pybx38qrnm3i5dxckx2fpc4snlx7km2w175xz"; depends=[lattice limma qvalue]; };
STAN = derive { name="STAN"; version="1.3.0"; sha256="02qg79aa0j2ns1xswdirgbpwb0dlghd0lbdxgnpmy225wgb7nak6"; depends=[Rsolnp]; };
STATegRa = derive { name="STATegRa"; version="1.3.1"; sha256="0kfwi5qimg4myx5x0gjwrkhz8cxh2hz1mvxla8yn8v8fkb3ryshj"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; };
STRINGdb = derive { name="STRINGdb"; version="1.9.1"; sha256="0w069dd8h1h80av18lh54xszs94d5nps19fzc225zmbdwqy21vx5"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; };
SVM2CRM = derive { name="SVM2CRM"; version="1.1.0"; sha256="0k3mg9b8i406ssvkzacz60qk000bnd1d5bmcqzc3yrh3w9qv567q"; depends=[AnnotationDbi GenomicRanges IRanges LiblineaR mclust pls ROCR rtracklayer squash verification zoo]; };
SamSPECTRAL = derive { name="SamSPECTRAL"; version="1.23.4"; sha256="0fqnqffw6q5sja3jkw6ddrachs075s5s7rnpg9fli9lgax5r4rbp"; depends=[]; };
ScISI = derive { name="ScISI"; version="1.41.0"; sha256="05snqj8qphcmnkrmv42p6zs92dmi09sd06abn5ll5234my5d0vvn"; depends=[annotate AnnotationDbi apComplex RpsiXML]; };
SemDist = derive { name="SemDist"; version="1.3.0"; sha256="0dvnp3d2s7bc4jv2vm8jikyac2cd23hx7r480g2lkcaic99wbl0s"; depends=[annotate AnnotationDbi]; };
SeqArray = derive { name="SeqArray"; version="1.9.17"; sha256="1h2bfpjwcw2qp11vg7x0j0j6in65g3kk9qr8h6ky8zijgmbclb5j"; depends=[Biostrings gdsfmt GenomicRanges IRanges S4Vectors VariantAnnotation]; };
SeqGSEA = derive { name="SeqGSEA"; version="1.9.1"; sha256="12gw3884nflmffipfrd8mh409gfk1x2gwamgj7sll0q2k0pjqh2j"; depends=[Biobase biomaRt DESeq doParallel]; };
SeqVarTools = derive { name="SeqVarTools"; version="1.7.7"; sha256="1yaxckrrfvgsrc3izmp0k6bj2m40b98mgl1wg0kf4z118agy94jk"; depends=[Biobase gdsfmt GenomicRanges GWASExactHW IRanges S4Vectors SeqArray stringr VariantAnnotation]; };
ShortRead = derive { name="ShortRead"; version="1.27.5"; sha256="0r9gmbg9fd3n6v8c0l1mjkk9x1v6qrisamm5a1nasqbg3wmhmz5k"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; };
SigCheck = derive { name="SigCheck"; version="2.1.0"; sha256="012n75gmsifvymbk20pjdv9g8mzmm9bzk98l089ymy5hbddja86b"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; };
SigFuge = derive { name="SigFuge"; version="1.7.0"; sha256="1b966n3rl4xs3q1vjgkxxfravqr02rdgwyzvr469y757qdqi1day"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; };
SimBindProfiles = derive { name="SimBindProfiles"; version="1.7.0"; sha256="04m7h5zil05sg9yfgjjzm1p65302fp50vxf8y1jafp1nwqialxwh"; depends=[Biobase limma mclust Ringo]; };
SomatiCA = derive { name="SomatiCA"; version="1.13.0"; sha256="06b3mz199qm2ynal8iq4kp8rv40wbc5zipzwm22nccf97krxl9a4"; depends=[DNAcopy doParallel foreach GenomicRanges IRanges lars rebmix sn]; };
SomaticSignatures = derive { name="SomaticSignatures"; version="2.5.8"; sha256="1ydrgpgjz5a09cfr70jhiir6l19da0mm9d1bgw38c1h8gvyaq6rz"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; };
SpacePAC = derive { name="SpacePAC"; version="1.7.0"; sha256="1ay5hlbm2x9g5mjrq5qksgrrr84vwfk49g9qb2sc9wyc46n5af6k"; depends=[iPAC]; };
SpeCond = derive { name="SpeCond"; version="1.23.0"; sha256="0nbbqazxql9mc5idvrcycrm9fkrnm2vi9zrad3awhc378ippdk8k"; depends=[Biobase fields hwriter mclust RColorBrewer]; };
SplicingGraphs = derive { name="SplicingGraphs"; version="1.9.3"; sha256="1r5579dd0695gyw3iqvb34j823nkashwmyx9isq9bzlkaan14d01"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; };
Starr = derive { name="Starr"; version="1.25.0"; sha256="0553rfkhzzlszhmfcrl7r7n2jmvvz9rqj91x131x3jsmb1qavw57"; depends=[affxparser affy MASS pspline Ringo zlibbioc]; };
Streamer = derive { name="Streamer"; version="1.15.2"; sha256="0mah1sq797ihy82mvb6vyppggap3nxcpwbnswxf1rw0jxhnjnmll"; depends=[BiocGenerics graph RBGL]; };
SummarizedExperiment = derive { name="SummarizedExperiment"; version="0.3.9"; sha256="0vrxq97n9kjmvvhc2vma5x9clilk4pacb25d1s7769r4rbgr30my"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
Sushi = derive { name="Sushi"; version="1.6.1"; sha256="0g1fk0xrn584l49r73crj0bc5z2y6rdzyf54d221r7k119njp3dw"; depends=[biomaRt zoo]; };
SwimR = derive { name="SwimR"; version="1.7.1"; sha256="1rhyq7a17h4zbragmglaf3blxl9iyyy92ckspp6vq8v1nr805sv6"; depends=[gplots heatmap_plus R2HTML signal]; };
TCC = derive { name="TCC"; version="1.9.5"; sha256="03h7bgzrff3m7dfvd7wmxc941lhxyl93mwk1rfdlfhvjk997cmxf"; depends=[baySeq DESeq DESeq2 edgeR ROC samr]; };
TCGAbiolinks = derive { name="TCGAbiolinks"; version="0.99.4"; sha256="1qhizy9ijx7yml6mz460ld0bq1xi0m9qp4qdajgnlrsfm0952a1m"; depends=[affy Biobase BiocGenerics biomaRt coin ConsensusClusterPlus data_table devtools dnet doParallel downloader dplyr EDASeq edgeR genefilter GenomicFeatures GenomicRanges GGally ggplot2 gplots heatmap_plus igraph IRanges limma plyr RColorBrewer RCurl rjson rvest S4Vectors scales stringr SummarizedExperiment supraHex survival xlsx XML xtable]; };
TDARACNE = derive { name="TDARACNE"; version="1.19.0"; sha256="0nwg355n0qs781801pmmwfwp66sa2ci7g6gfdh4669067j4qbqhb"; depends=[Biobase GenKern Rgraphviz]; };
TEQC = derive { name="TEQC"; version="3.9.2"; sha256="0j6pkvr5d27ib0pw4jh7vm44yarl4cgag9fap9h4l71q1qwxfc1r"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; };
TFBSTools = derive { name="TFBSTools"; version="1.7.6"; sha256="1j1f9lx09k5a9b4364p1ra7kd9j7mmxin8k9h51d6bpv5i2jl9nd"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DirichletMultinomial GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; };
TIN = derive { name="TIN"; version="1.1.0"; sha256="0npf3gwh2izvsa5j0zjy1gkm69nrxhcjlm2ha621fc1gz7lx1i2y"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; };
TPP = derive { name="TPP"; version="1.1.4"; sha256="0m21vv8v0cpq5f9116k7jip5sjg6aaz12yakck2j8b2hw4v0pkw1"; depends=[Biobase doParallel foreach ggplot2 gridExtra nls2 openxlsx plyr reshape2 VennDiagram VGAM]; };
TRONCO = derive { name="TRONCO"; version="2.0.0-16"; sha256="1rc72cbbiwli164g0acrff68fdpd382i18m9hpzzn5fxn04w0c1w"; depends=[bnlearn cgdsr doParallel ggplot2 gridExtra gtable igraph RColorBrewer reshape2 Rgraphviz scales xtable]; };
TSCAN = derive { name="TSCAN"; version="1.7.0"; sha256="0z3bl6vqx6ck8pa3pkc2z2g8gkkn9fvrz5vi8agkd0v2cnz6pjfs"; depends=[combinat fastICA ggplot2 gplots igraph mclust mgcv plyr shiny]; };
TSSi = derive { name="TSSi"; version="1.15.0"; sha256="0475zw1s34ayiz0v9i770rmha4rx9i3zzkjvyskgvsdpgsq9wl4j"; depends=[Biobase BiocGenerics Hmisc IRanges minqa plyr S4Vectors]; };
TargetScore = derive { name="TargetScore"; version="1.7.0"; sha256="0lkkxzi3fi0dxika09fkbakq54c2sjw4g4y9bafcy3f225fac8x8"; depends=[Matrix pracma]; };
TargetSearch = derive { name="TargetSearch"; version="1.25.0"; sha256="071p06gb1rn6sdhdpi7g05rflp6jgs0cdff13gj8hr5jykyw5ix7"; depends=[mzR]; };
TimerQuant = derive { name="TimerQuant"; version="0.99.4"; sha256="08wbm93256n1nir80icsv4mgkmdix5h138bwapmggw3c6hlxmscy"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; };
TitanCNA = derive { name="TitanCNA"; version="1.7.1"; sha256="0a64bqgyn18qdvgzmc6kqr6c16jlqyz0vah0fm2qwdjz3zmjd081"; depends=[foreach GenomeInfoDb IRanges Rsamtools]; };
ToPASeq = derive { name="ToPASeq"; version="1.3.0"; sha256="1m6mh30fpf9mmgg2wsv08qvizw0cpa6dz5abspgbw3q0vaskm2db"; depends=[Biobase clipper DESeq DESeq2 edgeR fields GenomicRanges graph graphite gRbase KEGGgraph limma locfit qpgraph R_utils RBGL Rcpp Rgraphviz TeachingDemos]; };
TransView = derive { name="TransView"; version="1.13.0"; sha256="14fanxl8lqam3492c5sbvhsjwbayrx7dcp5wpsbqrcvbssmfa3cx"; depends=[GenomicRanges gplots IRanges Rsamtools zlibbioc]; };
TurboNorm = derive { name="TurboNorm"; version="1.17.0"; sha256="1f2frh2xnngzpl2q2jxiild98qgnd60c0pz31aisk013nj3jdadq"; depends=[affy convert lattice limma marray]; };
TypeInfo = derive { name="TypeInfo"; version="1.35.0"; sha256="0rxwfaqg8sg70hiq8frm4pjhs8a17n0rgjra346bsi8cm4a2vyhz"; depends=[]; };
UNDO = derive { name="UNDO"; version="1.11.0"; sha256="173cdpp0gipwplxdf7ynxqnv8fqfkbyx7xmr5cx396zi8gpq3am4"; depends=[Biobase BiocGenerics boot MASS nnls]; };
UniProt_ws = derive { name="UniProt.ws"; version="2.9.2"; sha256="0pby1c7y8fxkpdd2knbv8gbxs78ry1dz8q9zqw6bakp831v5kbgw"; depends=[AnnotationDbi BiocGenerics RCurl RSQLite]; };
VanillaICE = derive { name="VanillaICE"; version="1.31.3"; sha256="0niimjngjx8wq2fylzjdijb2za4w4ia53aqkdnjwjfl78rg2hwch"; depends=[Biobase BiocGenerics crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment]; };
VariantAnnotation = derive { name="VariantAnnotation"; version="1.15.31"; sha256="0lnj8r27g3gdcmbjpvzb2h5jfy6j2fqyll0cvjlkcjps2sd67qnd"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; };
VariantFiltering = derive { name="VariantFiltering"; version="1.5.17"; sha256="1xblj18nl6y7bk3ggshxq46khb1szdh8g5hraf89dknmsdm0gbq3"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges graph Gviz IRanges RBGL Rsamtools RSQLite S4Vectors shiny VariantAnnotation XVector]; };
VariantTools = derive { name="VariantTools"; version="1.11.0"; sha256="1yyx9l6q3v4igm2ppnrsj9c7p4p0zpkqwjyf9d7b7rqvrk9yjyrv"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges gmapR IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; };
Vega = derive { name="Vega"; version="1.17.0"; sha256="1c39112czlw9hgh9gmkwxhhz9kwki48k8lsfmy3hkzxqpxx61h01"; depends=[]; };
VegaMC = derive { name="VegaMC"; version="3.7.0"; sha256="046wly5sn4vwk3h4bcick8q5dpjrfjq393rqjl8y4v24iqynlyqd"; depends=[Biobase biomaRt genoset]; };
XBSeq = derive { name="XBSeq"; version="0.99.8"; sha256="08si4x14xz4p2rqy8766b55bpca939xkc54vc9jvj5dfyc5cp7ih"; depends=[Biobase BiocGenerics Delaporte DESeq2 dplyr ggplot2 locfit magrittr matrixStats pracma]; };
XDE = derive { name="XDE"; version="2.15.0"; sha256="17i8zxb6q4wpsa8lymcnilmr39ip1a54h6rqyl3m7qa8xwb0gv50"; depends=[Biobase BiocGenerics genefilter gtools MergeMaid mvtnorm]; };
XVector = derive { name="XVector"; version="0.9.4"; sha256="0nl1hy2mrfz97xm8m13a5k4nm4hjpxhhnns1niph707f18iw1bj7"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; };
a4 = derive { name="a4"; version="1.17.0"; sha256="0pn0gm4xkngz72i92h58d0xbpcx04938x4vm0mqsilrjapchripj"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; };
a4Base = derive { name="a4Base"; version="1.17.0"; sha256="13cxavpf8x7y7n6aszdibpq225raj15klnidk59kpxn4vmpyqskl"; depends=[a4Core a4Preproc annaffy AnnotationDbi Biobase genefilter glmnet gplots limma mpm multtest]; };
a4Classif = derive { name="a4Classif"; version="1.17.0"; sha256="1inascpwzzshy1halmsalz7nk9m63rbpg6xh0wxydaflm8wbxmr1"; depends=[a4Core a4Preproc glmnet MLInterfaces pamr ROCR varSelRF]; };
a4Core = derive { name="a4Core"; version="1.17.0"; sha256="07fc0kg4l44mbps49bdivsxdf5581mdvgdl2551a24vayb6kg050"; depends=[Biobase glmnet]; };
a4Preproc = derive { name="a4Preproc"; version="1.17.0"; sha256="1xb7jqvb4x5s9a5gbn8b7z69cwhsbmln5s0lymxcgmfb73sjczfw"; depends=[AnnotationDbi]; };
a4Reporting = derive { name="a4Reporting"; version="1.17.0"; sha256="1fpdkw048gv9031rz7zkkx55i5qw5b03zdhykxkcczb1f51znby2"; depends=[annaffy xtable]; };
aCGH = derive { name="aCGH"; version="1.47.0"; sha256="095arlryay4gdr6kva7vf9lcby60pyx5bs4vcx586zgwskzpb2ln"; depends=[Biobase cluster multtest survival]; };
acde = derive { name="acde"; version="0.99.6"; sha256="0spfm9ivix09d79nbkgvqw0jggw42nmk4xb7iwwcsazpz3881clf"; depends=[boot]; };
adSplit = derive { name="adSplit"; version="1.39.0"; sha256="1jprbqwhksyp9jf05r5dbfzgn30xm16shqsf8yi9b3nr7z2swvwm"; depends=[AnnotationDbi Biobase cluster multtest]; };
affxparser = derive { name="affxparser"; version="1.41.7"; sha256="06wrjn2xzywicdgfr278i788cgk2yf2j1cihn0kv3sdj3jvhvmid"; depends=[]; };
affy = derive { name="affy"; version="1.47.1"; sha256="1c9ggyqhj65mj0nq9xsqfmzp4a5705qj67swjpk5bmqajxr390a3"; depends=[affyio Biobase BiocGenerics BiocInstaller preprocessCore zlibbioc]; };
affyContam = derive { name="affyContam"; version="1.27.0"; sha256="1hd9kchhdjcnkxlf6kcc59jb5a9v67671shvzprraa1lg4800j5x"; depends=[affy Biobase]; };
affyILM = derive { name="affyILM"; version="1.21.0"; sha256="1gvagg83p4vxp6q72s7camcg5lhxdfy7rmm3a2p2n29267xvcz5x"; depends=[affxparser affy Biobase gcrma]; };
affyPLM = derive { name="affyPLM"; version="1.45.0"; sha256="1443xrhphkmrjah5lgnq00zqbillngwz9r50xk1kg9br4fxm3adv"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; };
affyPara = derive { name="affyPara"; version="1.29.0"; sha256="06382vyfjrng72hhmdivbhz02l27g18ll867clj8avi5r66zlj4n"; depends=[affy affyio aplpack snow vsn]; };
affyQCReport = derive { name="affyQCReport"; version="1.47.0"; sha256="09f3pbacsrjs5bv1bv3dz7jmd849rnix6pqlkszr507s6by5i47y"; depends=[affy affyPLM Biobase genefilter lattice RColorBrewer simpleaffy xtable]; };
affycomp = derive { name="affycomp"; version="1.45.0"; sha256="0wwgijr7h2hbv2l0w5p509f70yy873w8kahs7nnhrgl4kzbjiymc"; depends=[Biobase]; };
affycoretools = derive { name="affycoretools"; version="1.41.9"; sha256="16zdm1idmssg9jp86kkfc2h2dhjz2rl6qnrbybfbkiiklj2gagq7"; depends=[affy AnnotationDbi Biobase gcrma ggplot2 GOstats gplots hwriter lattice limma oligoClasses ReportingTools xtable]; };
affyio = derive { name="affyio"; version="1.39.0"; sha256="07m032wbfgi06yl79waskb2h1r4qi65pzr1j2ry60cr9jv50sizc"; depends=[zlibbioc]; };
affylmGUI = derive { name="affylmGUI"; version="1.43.2"; sha256="1mkg2addri3x8vchgcdy4wih1pzagbp0i54w3nh9kf64r89m35br"; depends=[affy affyio affyPLM AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; };
affypdnn = derive { name="affypdnn"; version="1.43.0"; sha256="01myf9dxzgc2jgdswphinz7ap7bdaqnw0gcfk32sxbykr4g4zyiy"; depends=[affy]; };
agilp = derive { name="agilp"; version="3.1.0"; sha256="13jnq7v0qfyllbldx2abnia0rg40yxxgkq4i1whsy5qnk1fp0n77"; depends=[]; };
alsace = derive { name="alsace"; version="1.5.0"; sha256="17ah7dl02w6qysfbs92h4c3wxfb6f1m6vz6yl07s0zd86k12g4nm"; depends=[ALS ptw]; };
altcdfenvs = derive { name="altcdfenvs"; version="2.31.0"; sha256="05gr6j1w1y289p239138qv4ap4rciwpbw2g2cdm63xzlnryanr1m"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv]; };
ampliQueso = derive { name="ampliQueso"; version="1.7.0"; sha256="1bk0svxg7n6b610d5czkk1mgkrgdsjlghbj38g4hxxw3vciaxhkk"; depends=[DESeq doParallel edgeR foreach genefilter ggplot2 gplots knitr rgl rnaSeqMap samr statmod VariantAnnotation xtable]; };
annaffy = derive { name="annaffy"; version="1.41.1"; sha256="1rqp0lrhahkimnhifpipf2vw0lhprdx9slz3s4bwylvn0k5balcm"; depends=[AnnotationDbi Biobase]; };
annmap = derive { name="annmap"; version="1.11.0"; sha256="0s0ifbwra3zczw9h0nqcs88rb3h74ry1gap1bvqvcxqirdwq9nw4"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; };
annotate = derive { name="annotate"; version="1.47.4"; sha256="01imryfc18jg8hmxk82arkpvdxfh448fhiv5z0xmkbx03hrrin7b"; depends=[AnnotationDbi Biobase BiocGenerics DBI XML xtable]; };
annotationTools = derive { name="annotationTools"; version="1.43.0"; sha256="1dqs8f4p1ks03q0lfwm3hs116ahks39hk17knkqs492zcqr83qay"; depends=[Biobase]; };
anota = derive { name="anota"; version="1.17.0"; sha256="0grdmpdg03wqjs6rk558nvl8vvdi6my0jv06f3h364pk44hrijdn"; depends=[multtest qvalue]; };
antiProfiles = derive { name="antiProfiles"; version="1.9.1"; sha256="07gzl7wsvv3x7in7n1fwq4cm8bqhlrxwq6ra1k2556z9z8ad7y33"; depends=[locfit matrixStats]; };
apComplex = derive { name="apComplex"; version="2.35.0"; sha256="0h9vvz62fbnqqw2qz4kpcr0s40yj7swy0plkdaq51q04p41z016r"; depends=[graph RBGL Rgraphviz]; };
aroma_light = derive { name="aroma.light"; version="2.9.0"; sha256="059bdqs4ib0jlzd94380226rbzdhh8xjf8az5ikv82kx3yvhdjf4"; depends=[matrixStats R_methodsS3 R_oo R_utils]; };
arrayMvout = derive { name="arrayMvout"; version="1.27.0"; sha256="1czqsd34d8rb9h4vwp2m6ficvi41gbdgrilgbl0fb01vlp79qq0k"; depends=[affy affyContam Biobase lumi mdqc parody simpleaffy]; };
arrayQuality = derive { name="arrayQuality"; version="1.47.0"; sha256="0f3wvvb1a78hzlxansjfh065vbyh2qk9vz3jna6294zc7k4r7wfb"; depends=[gridBase hexbin limma marray RColorBrewer]; };
arrayQualityMetrics = derive { name="arrayQualityMetrics"; version="3.25.0"; sha256="0h90j2fj87bvwj1cjy7qq5mnfy4jabqa8ijq23gp3p51qwyh84zr"; depends=[affy affyPLM beadarray Biobase Cairo genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG vsn XML]; };
attract = derive { name="attract"; version="1.21.0"; sha256="0kl2kgxvm9ix2lwcwilmzcjhxbhx99afn6g6608aq26649q3k2sz"; depends=[AnnotationDbi Biobase cluster GOstats limma]; };
ballgown = derive { name="ballgown"; version="2.1.2"; sha256="0hwd72nycqcdrrfmmmg4cpd2d180jsg5azl7gr9z4r5fmsmiv76i"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; };
bamsignals = derive { name="bamsignals"; version="1.1.0"; sha256="1ga4swlqmjg4xnmkk16h0qjh3dpz7n0pra2233j4cz78cn8zvj3p"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; };
baySeq = derive { name="baySeq"; version="2.3.0"; sha256="1l0is5dcwip7babll7mpsahhj69v1j1d7caq64ak6qhb477pmak5"; depends=[abind GenomicRanges perm]; };
beadarray = derive { name="beadarray"; version="2.19.1"; sha256="0al50lli8ckbr8cs38r6xr5v4rldf6xy7iwl5hbs5avxnibk3s8k"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 illuminaio IRanges limma reshape2]; };
beadarraySNP = derive { name="beadarraySNP"; version="1.35.0"; sha256="0g6ba4iynfgrm647d5vx6wk9pijg62bdvvz1afz9dimqvjlwybhc"; depends=[Biobase quantsmooth]; };
betr = derive { name="betr"; version="1.25.0"; sha256="0jd7r069jlfp5fj51xw8k6jpxq5kb364xi9331l06hwijp3msrk6"; depends=[Biobase limma mvtnorm]; };
bgafun = derive { name="bgafun"; version="1.31.0"; sha256="18wk42h1i06j3swlsac9vnkc7riimk7qap59lygji1p3zvy1nkpx"; depends=[ade4 made4 seqinr]; };
bgx = derive { name="bgx"; version="1.35.0"; sha256="1cawfanrxq82b24ny050hv4p607k2zhfxllgl8j1j9qm9n4yk4yk"; depends=[affy Biobase gcrma]; };
bigmemoryExtras = derive { name="bigmemoryExtras"; version="1.13.5"; sha256="0rs08rwawnm3k88p0arl1rmndma48yyvryr96wj678haf4zjkkx8"; depends=[bigmemory Biobase]; };
bioDist = derive { name="bioDist"; version="1.41.0"; sha256="14a18ky9x36fa8yx3kry23c0vfazxy0lg0j2zkdnr1irngc9wnw5"; depends=[Biobase KernSmooth]; };
bioassayR = derive { name="bioassayR"; version="1.7.7"; sha256="1pflygamq0l0pdps4ay3rl4f8c1njrb55lnl0p2z7mgpj6dbgvf8"; depends=[BiocGenerics DBI Matrix rjson RSQLite XML]; };
biocGraph = derive { name="biocGraph"; version="1.31.0"; sha256="069n4867pkygrsgfjp6arnnmcvlij03r1a2kbs9jgnpx4knck09i"; depends=[BiocGenerics geneplotter graph Rgraphviz]; };
biocViews = derive { name="biocViews"; version="1.37.13"; sha256="0rglrlvb73mr4p7qxav1ph7d5mm4bh7aj5ypp1wkir00cgb8y8xm"; depends=[Biobase graph knitr RBGL RCurl RUnit XML]; };
biomaRt = derive { name="biomaRt"; version="2.25.3"; sha256="1syhy3d75d1zlknd9xwp34n01p7w2666dk5vsvp8v2cd5vi1xah0"; depends=[AnnotationDbi RCurl XML]; };
biomvRCNS = derive { name="biomvRCNS"; version="1.9.1"; sha256="0ni7ncip0vx1ipyrgd2kkasw6cmxbr2ha2dsqb0bizyyf2981rnh"; depends=[GenomicRanges Gviz IRanges mvtnorm]; };
biosvd = derive { name="biosvd"; version="2.5.0"; sha256="0xnc3vpbj5p14w2fwql8vpz9lyvivq3kjmwsr62abn418ampa941"; depends=[Biobase BiocGenerics NMF]; };
biovizBase = derive { name="biovizBase"; version="1.17.2"; sha256="0q6mzz32zbs59cywcw8865mnsw48qzyikn0453lx0ikvj22r2s12"; depends=[AnnotationDbi BiocGenerics Biostrings dichromat GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; };
birta = derive { name="birta"; version="1.13.0"; sha256="01lrwg4naks85gcrlg3sk3pr328j40b1ji4m4bn3s74rqn6sb52h"; depends=[Biobase limma MASS]; };
birte = derive { name="birte"; version="1.4.0"; sha256="0fyz2chcgcp98lk6zj21lsixmkr06hd80dbg2j25a4rx2pv6qn5s"; depends=[Biobase limma MASS nem Rcpp RcppArmadillo ridge]; };
blima = derive { name="blima"; version="1.3.0"; sha256="1i7njg1lw76717irmfbpy9pmv8hy7nzyini2wm6625cafizp5xq8"; depends=[beadarray Biobase BiocGenerics]; };
bridge = derive { name="bridge"; version="1.33.0"; sha256="06iz67amv80az14s8yim25jfsgbxhxbfifbqazsc78ip9gd7lfyv"; depends=[rama]; };
bsseq = derive { name="bsseq"; version="1.5.5"; sha256="1yhrysqrbv38p7k7g8sywp6ly6prll1kgjpkk7ff9gklpgmdygkq"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges gtools IRanges locfit matrixStats R_utils S4Vectors scales SummarizedExperiment]; };
bumphunter = derive { name="bumphunter"; version="1.9.1"; sha256="0phq9dhrj8fa253a64vwfp75j85vp9142g5gmfy1g1n861xy8r26"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; };
caOmicsV = derive { name="caOmicsV"; version="0.99.2"; sha256="0y96f64m0liv53vbby866v1ga5nml1506pp6ff4ax7dbg0niiwwn"; depends=[bc3net igraph]; };
canceR = derive { name="canceR"; version="1.1.3"; sha256="1cagv58133w80acjzlyvx2752ap4dhkpvsfr34306gwbvs4gin3j"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; };
cancerclass = derive { name="cancerclass"; version="1.13.0"; sha256="066v9dz49ap0db31jrdlx2zbv8l3bwd75sf9gqa1dw3g8m9zq7hg"; depends=[binom Biobase]; };
casper = derive { name="casper"; version="2.3.1"; sha256="12nz9ypg685c1bly3fp9x76cilh6imlw4hqdmd7sbp2d0z89dcgf"; depends=[Biobase BiocGenerics EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; };
categoryCompare = derive { name="categoryCompare"; version="1.13.0"; sha256="08r5payxn40xdpaph6zind8miqlqdhnmka9jcijj396rbbhvb480"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCytoscape]; };
ccrepe = derive { name="ccrepe"; version="1.5.0"; sha256="1cza3f27216aqlhmc3qfdxvjwywzhwklfg27ls37fbzv6a40wy8j"; depends=[infotheo]; };
cellGrowth = derive { name="cellGrowth"; version="1.13.0"; sha256="1x7fxjhddv46wxv7qy1j8vzjna07r0drizpmsjakjw21mr4r3w06"; depends=[lattice locfit]; };
cellHTS = derive { name="cellHTS"; version="1.39.1"; sha256="1xvnk8s7grhmjdh369zp6w6fasgrysbgnfyshgckaghvnlb5c962"; depends=[genefilter prada RColorBrewer]; };
cellHTS2 = derive { name="cellHTS2"; version="2.33.1"; sha256="0w7dmd24ylsgkra8m6mawfsgifysda098ldk7csffz4p8nyr5dah"; depends=[Biobase Category genefilter GSEABase hwriter locfit prada RColorBrewer splots vsn]; };
cghMCR = derive { name="cghMCR"; version="1.27.0"; sha256="1chyl52628gnxnsky2d0xbxsj7x3jizc1h914cip9i90akir6srk"; depends=[BiocGenerics CNTools DNAcopy limma]; };
charm = derive { name="charm"; version="2.15.0"; sha256="14mrkgzfhljsmf4saw64nkid583mx0wxwjfq16gzm5j8q5d2qy88"; depends=[Biobase Biostrings BSgenome ff fields genefilter gtools IRanges limma nor1mix oligo oligoClasses preprocessCore RColorBrewer siggenes SQN sva]; };
chimera = derive { name="chimera"; version="1.11.0"; sha256="12341saahq2b3bwiqd2hpmykvsfdbzqy4082iv4lp3pjdzpvbmmx"; depends=[AnnotationDbi Biobase GenomicAlignments GenomicRanges Rsamtools]; };
chipenrich = derive { name="chipenrich"; version="1.7.2"; sha256="08fmf80nlkr5yavq89nrzxxc8w8yfvpcfl2f5797a8yb5vg1palj"; depends=[GenomicRanges IRanges lattice latticeExtra mgcv plyr rms stringr]; };
chipseq = derive { name="chipseq"; version="1.19.1"; sha256="1f84a0lscsh72n284h2i09zaimki3mlh73575bixy734lixjkvfn"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; };
chopsticks = derive { name="chopsticks"; version="1.33.0"; sha256="0p6jsvn5pmbh0ws7kplkwx9dajl6npfd1icxds42kygkpcf3y8bz"; depends=[survival]; };
chroGPS = derive { name="chroGPS"; version="1.13.1"; sha256="0ggzhi8fx9nrxcz88ail5m831hvg8pkqxmvj2xgxjvzbb0gk5sak"; depends=[Biobase changepoint cluster DPpackage ICSNP IRanges MASS]; };
chromDraw = derive { name="chromDraw"; version="1.1.0"; sha256="1v3k6kiz2l216l61l8pr95fhyin6hqqg7qv9six5xg40xai8is7a"; depends=[GenomicRanges Rcpp]; };
cisPath = derive { name="cisPath"; version="1.9.0"; sha256="1jdq159ixiixh9ppfc5g4pqi625vawag2w89q2l2n3fq57x890w8"; depends=[]; };
cleanUpdTSeq = derive { name="cleanUpdTSeq"; version="1.7.1"; sha256="0inszzss1fqyhw18lx40iycvpzkm18djxmad1li8bd22hss759c2"; depends=[BiocGenerics BSgenome e1071 GenomicRanges seqinr]; };
cleaver = derive { name="cleaver"; version="1.7.0"; sha256="14vbdagy61imql6z2qazzlqzp0r9ridydn7phvajc84lnwbf8xa3"; depends=[Biostrings IRanges]; };
clippda = derive { name="clippda"; version="1.19.0"; sha256="1gd5b2n2qa9bv1n93vcdz8lg8kmn1lv923i3gzq8pcy7fbz7m5cs"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; };
clipper = derive { name="clipper"; version="1.9.2"; sha256="10wf7jkgj1ad30piaqmy7yl7402agpjcz9xizcsjbzypsqwy20z2"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; };
clonotypeR = derive { name="clonotypeR"; version="1.7.0"; sha256="1pwwjgln7r7035fdqqfb69fgql91cxfablbwid2m5xkdrwzpb57s"; depends=[]; };
clst = derive { name="clst"; version="1.17.1"; sha256="08gqxcjchzywvc67nfjmr2i1xxm71i1j00qxdq3zs6p9y4n65qa0"; depends=[lattice ROC]; };
clstutils = derive { name="clstutils"; version="1.17.1"; sha256="04gwj8mlbqd5l2nas146vk0vzad0z1y4225g935h9baspcmdh3f8"; depends=[ape clst lattice rjson RSQLite]; };
clusterProfiler = derive { name="clusterProfiler"; version="2.3.8"; sha256="1218gsrrf01khfj2vjakf2gshb0k7ww9vbd6dgdxw4kbv2ymcjfy"; depends=[AnnotationDbi DOSE ggplot2 GOSemSim KEGGREST magrittr plyr qvalue topGO]; };
clusterStab = derive { name="clusterStab"; version="1.41.0"; sha256="0sgj2k70fc3r3s19vxcx95z8s3a42yshl78swxp0qp55kidbhvdp"; depends=[Biobase]; };
cn_farms = derive { name="cn.farms"; version="1.17.0"; sha256="09xasmanimx3mzis786iwy2nvxqa5rzvrvrz1hpsiyh5y77yrbnb"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; };
cn_mops = derive { name="cn.mops"; version="1.15.3"; sha256="0swin9qyzi2fcc0frq0xnzmj789vbjj0mi2wnmmy131blp7iy6x9"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools]; };
cnvGSA = derive { name="cnvGSA"; version="1.13.0"; sha256="1sswh1xwimki8ys08l2h95ajpnm5gr0bscvwilhjw4g2a0y7nibr"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; };
coGPS = derive { name="coGPS"; version="1.13.0"; sha256="160cf9ijn5crvhwbqldix1n36jrmn51085sr4whgm765si57wwb4"; depends=[]; };
coMET = derive { name="coMET"; version="1.1.0"; sha256="01baf156p0ldqhczrin2lsf4jir7158b0db5732jddnl5ayghsi3"; depends=[biomaRt colortools GenomicRanges ggbio ggplot2 gridExtra Gviz hash IRanges psych rtracklayer S4Vectors trackViewer]; };
coRNAi = derive { name="coRNAi"; version="1.19.0"; sha256="1vidwyq8rnkbi0pfbh3mk8m3qj8acwqn7q6jm35gahy4y3p0nq7x"; depends=[cellHTS2 gplots lattice limma locfit MASS]; };
cobindR = derive { name="cobindR"; version="1.7.1"; sha256="0mya51pynfdxfap3paylinqg10fpir7flsz1bng0sk34y15jnxbz"; depends=[BiocGenerics biomaRt Biostrings BSgenome gmp gplots IRanges mclust rtfbs seqinr yaml]; };
codelink = derive { name="codelink"; version="1.37.8"; sha256="0f5ixqd7sgczy2dx9yhkhcj1r2269h1bin3nkwkpldc6z4aqbzq4"; depends=[annotate Biobase BiocGenerics limma]; };
cogena = derive { name="cogena"; version="1.2.0"; sha256="14p01k6dmh7hb34gbmbb7cvx8zsqc8mpbnah3vl2vpirh7i3p7nb"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2]; };
compEpiTools = derive { name="compEpiTools"; version="1.3.5"; sha256="0mbcgsmabyvm6g8mb95fkr2cnkqd3zz9hx9vz0qrbc8rx0nx5jp4"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; };
compcodeR = derive { name="compcodeR"; version="1.5.3"; sha256="0208sxff40mjizr47zf6yf87irnnjm0gizdk9h5frbizdxl2i9nn"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; };
conumee = derive { name="conumee"; version="1.1.0"; sha256="1sxl5m7yfqbzg76n06y1jcv0v75y7wf3ad66zw8v004nz84diaix"; depends=[DNAcopy GenomeInfoDb GenomicRanges IRanges minfi rtracklayer]; };
convert = derive { name="convert"; version="1.45.0"; sha256="1sg152ma0y0n6vy9f0zas6znmndjp1j0n8vxa6ymw4pkg7li0fxa"; depends=[Biobase limma marray]; };
copa = derive { name="copa"; version="1.37.0"; sha256="03sr5lcfxw49gnhm7xsdskbz740hirqba743617wcwkbay8nr5lj"; depends=[Biobase]; };
copynumber = derive { name="copynumber"; version="1.9.0"; sha256="0zgkgyqzkhh9fwmrjcy06vi0g80nvr7193m5qbidgf3sbvkiabhr"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; };
cosmiq = derive { name="cosmiq"; version="1.3.0"; sha256="1868sxwlmaqas3w3nrw4bvxfhs42qsm97gdwksp4fakpm039h757"; depends=[MassSpecWavelet pracma Rcpp xcms]; };
cpvSNP = derive { name="cpvSNP"; version="1.1.0"; sha256="066y409zfz0bway990ygck5lf0vzl6whh212v4rpis1l9bzfv434"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; };
cqn = derive { name="cqn"; version="1.15.1"; sha256="1g1ip7lxs82qq0qbhnx90hxmjiypc76p1sgx7yvj5nmp6wp1m5xy"; depends=[mclust nor1mix preprocessCore quantreg]; };
crlmm = derive { name="crlmm"; version="1.27.0"; sha256="16i3ijqhwp6c2dshk8r7idrjwga3sm1qcafqz9gl4q6b04s5jvym"; depends=[affyio Biobase BiocGenerics ellipse ff foreach illuminaio lattice matrixStats mvtnorm oligoClasses preprocessCore RcppEigen SNPchip VGAM]; };
csaw = derive { name="csaw"; version="1.3.13"; sha256="199y1x5anm30vfbyfpwpwbdznj54vq67rf2pp5b6zidi1q6ik22x"; depends=[AnnotationDbi edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges limma Rsamtools S4Vectors SummarizedExperiment]; };
ctc = derive { name="ctc"; version="1.43.0"; sha256="139rxdvyvv3wvlc5q3581y5hkjkd5smxvb606mlxjb8lww4qmcj8"; depends=[amap]; };
cummeRbund = derive { name="cummeRbund"; version="2.11.2"; sha256="14bladl7g7ldc8jqjs1x4bs16jg5r9dh6w5ajndgi8sh5ynpdkxz"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer]; };
customProDB = derive { name="customProDB"; version="1.9.4"; sha256="0ws620i6s9p477zfns0m6qpzzhrsivjziv2gv3gmy19dhfh0ln08"; depends=[AnnotationDbi biomaRt Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer stringr VariantAnnotation]; };
cycle = derive { name="cycle"; version="1.23.0"; sha256="1fpn41xgnvn77m2bga3j70hh61ar0mns919ib21ap763j8lkbm19"; depends=[Biobase Mfuzz]; };
cytofkit = derive { name="cytofkit"; version="1.1.1"; sha256="0kzy6ylijyypsii5vl77r0wl2s2rhnvj98qbiy96ziijfjmjmfcc"; depends=[Biobase e1071 flowCore ggplot2 gplots reshape Rtsne vegan]; };
daMA = derive { name="daMA"; version="1.41.0"; sha256="0jfp6kxzys0w8vv8fr5shki79rimiagylvkz5avg2idvzgs2q1w8"; depends=[MASS]; };
dagLogo = derive { name="dagLogo"; version="1.7.3"; sha256="1nxj97l351s1wj560cfija5a0gggcfq6lfaihn3s5nw3xbz23w88"; depends=[biomaRt Biostrings grImport motifStack pheatmap]; };
ddCt = derive { name="ddCt"; version="1.24.2"; sha256="06cg2q8sg2685z7salbfyq2xb1mya3avgjrdmi6nw88rr8pxz0w7"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; };
ddgraph = derive { name="ddgraph"; version="1.13.0"; sha256="1krdxmcjrhbw5gdrg68m41m1mhb5q0ijmqhxbvvxzqm3wyh8v2g1"; depends=[bnlearn graph gtools MASS pcalg plotrix RColorBrewer Rcpp]; };
deepSNV = derive { name="deepSNV"; version="1.15.3"; sha256="1sg4swpna7h4lmpzmqg1x4lqmyx1xq0fckz43gpvpk5s8li6j62h"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; };
deltaGseg = derive { name="deltaGseg"; version="1.9.1"; sha256="09hvb6cfypwsnndc93ykqhcw8df5ap7d29gqbvm7gz71in05lh15"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; };
derfinder = derive { name="derfinder"; version="1.3.3"; sha256="11npavkr27f3c48bp40vgn9klgmpqs2w17gl96qn5g1y2gyvrhk5"; depends=[AnnotationDbi BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; };
derfinderHelper = derive { name="derfinderHelper"; version="1.3.1"; sha256="03kijh42x1v4ix4gxs1729rifwckaz9npcrd9b3j6xsizx97b4cr"; depends=[IRanges Matrix S4Vectors]; };
derfinderPlot = derive { name="derfinderPlot"; version="1.3.4"; sha256="1f7x609sknmbn8gsxq75073vfr0qd0k9j7gfi0fxvgnm5f4lkizx"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer reshape2 scales]; };
destiny = derive { name="destiny"; version="0.99.16"; sha256="0gycxg58jf4vp6npvf4445mz5xbyiqgn9nvnibv9kgjwjidfglla"; depends=[Biobase BiocGenerics FNN igraph Matrix proxy Rcpp RcppEigen scatterplot3d VIM]; };
dexus = derive { name="dexus"; version="1.9.0"; sha256="1xnjs6gmzkdj1snwakq73bz8ypnxzzxh8ki9wv0ljfbfwv1j7z53"; depends=[BiocGenerics]; };
diffGeneAnalysis = derive { name="diffGeneAnalysis"; version="1.51.0"; sha256="1k5as63cd87nnigc0yzaxvhskpnbr7l1ym2bqc57zsm3bwh8xxwb"; depends=[minpack_lm]; };
diffHic = derive { name="diffHic"; version="1.1.16"; sha256="02mrq5s1ddzyhkfs6pshfj78hlv0ppql23lhxmhz823qkjrqp6j7"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges IRanges limma locfit rhdf5 Rsamtools S4Vectors]; };
diggit = derive { name="diggit"; version="1.1.1"; sha256="0c3zy1d9bzb6asa4clgq738h7dj6md55gclwa244qyx857b58rqv"; depends=[Biobase ks viper]; };
dks = derive { name="dks"; version="1.15.0"; sha256="1d66jfca6q8ni5vz5zh7fmxwh3y0yvl2p7gal7w55py6wvyssnl3"; depends=[cubature]; };
domainsignatures = derive { name="domainsignatures"; version="1.29.0"; sha256="1wkypbm5ldwx8y2n16fajf450pwv6zipjdk0176a5rqihaflz80l"; depends=[AnnotationDbi biomaRt prada]; };
dualKS = derive { name="dualKS"; version="1.29.0"; sha256="1a2wb137x98nmdm8dvnl4msl89mlyvm8f1kqzr6jhdj4wjv2hrg1"; depends=[affy Biobase]; };
dupRadar = derive { name="dupRadar"; version="0.99.2"; sha256="0crxbb34wx6llsagkrq16qppwhizj6sn5zl63czl4w33q39xm5n5"; depends=[Rsubread]; };
dyebias = derive { name="dyebias"; version="1.27.0"; sha256="095qcnri2g19m363ipdi31xgn20b51mbfv5mgkk21m6fww1npc92"; depends=[Biobase marray]; };
easyRNASeq = derive { name="easyRNASeq"; version="2.5.6"; sha256="0b93i80fjvljjm4il1ad9g3apznj23hcyhpq3z10zsw81clfya1j"; depends=[Biobase BiocGenerics BiocParallel biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; };
ecolitk = derive { name="ecolitk"; version="1.41.0"; sha256="0jga35q98bidqjlqynq0cack4gwsm3hw34vgns67v37krjs4hn9f"; depends=[Biobase]; };
edge = derive { name="edge"; version="2.1.0"; sha256="1xxz8qyagrfr92ldaxlgb8dfpm6nx3lyk6fa4dl0m8yvlr6lw2fa"; depends=[Biobase MASS qvalue snm sva]; };
edgeR = derive { name="edgeR"; version="3.11.3"; sha256="1pba2hb8vm9ji6gd2vjsrc5n8yrynpar01mlzsk8vb8bp681cj4i"; depends=[limma]; };
eiR = derive { name="eiR"; version="1.9.2"; sha256="02735vx7yj00g9yxxa1h021bxqib9vsa744dx41gar6qh9zzdwyg"; depends=[BH BiocGenerics ChemmineR DBI digest RCurl RUnit snow snowfall]; };
eisa = derive { name="eisa"; version="1.21.0"; sha256="03366q5qj4wdfm4d9lwysmgz3bgwc53zynw2cmsj7w3yg6dj63km"; depends=[AnnotationDbi Biobase BiocGenerics Category DBI genefilter isa2]; };
ensemblVEP = derive { name="ensemblVEP"; version="1.9.5"; sha256="0prmspi5qj0d2qwd3bnjnl774lslsz527np164qykxfn0l7w0ks3"; depends=[BiocGenerics Biostrings GenomicRanges VariantAnnotation]; };
ensembldb = derive { name="ensembldb"; version="1.1.7"; sha256="1r1nkrikwqb00vsfm15qaym88hk359xd1ccdybyan28cbr7mqmnb"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics DBI GenomeInfoDb GenomicFeatures GenomicRanges Rsamtools RSQLite rtracklayer S4Vectors]; };
epigenomix = derive { name="epigenomix"; version="1.9.2"; sha256="0l7pa2nyllf7imapbxqavyg3h0ba3wc1bhrhz7a7bc8rr8qyq0w1"; depends=[beadarray Biobase BiocGenerics GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; };
epivizr = derive { name="epivizr"; version="1.7.8"; sha256="01z80dbahjbf60d71hiqai5h5i546hvl2j737b4xjca9017g2wsg"; depends=[Biobase GenomeInfoDb GenomicFeatures GenomicRanges httpuv mime OrganismDbi R6 rjson rtracklayer S4Vectors SummarizedExperiment]; };
erccdashboard = derive { name="erccdashboard"; version="1.3.5"; sha256="0bdxxrrx29chk23jasf5dz2wqqlf0xqn7vyma8vsikz5194g3kcg"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr QuasiSeq qvalue reshape2 ROCR scales stringr]; };
erma = derive { name="erma"; version="0.1.29"; sha256="0f5j8mv9l1lv6wygf9jrqwv84i6h89l7fsgz451jlp7k5bqhkbwg"; depends=[Biobase BiocGenerics foreach GenomicFiles GenomicRanges ggplot2 rtracklayer S4Vectors shiny]; };
eudysbiome = derive { name="eudysbiome"; version="0.99.3"; sha256="0ad6abz1y7yzslc08p5axqrd5rgp6mf58y676bhmyr0vkxjb9hqy"; depends=[plyr]; };
exomeCopy = derive { name="exomeCopy"; version="1.15.0"; sha256="1047k3whc8pjcrvb10dmykbc3c7ah4fgzsiqxw7asp4ksiqpj5ii"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; };
exomePeak = derive { name="exomePeak"; version="1.9.1"; sha256="1lvzr8zsa61vj5qhd4yh9n8vmfw759b8gbpp6q9yxz1py1ky16y6"; depends=[GenomicAlignments GenomicFeatures Rsamtools rtracklayer]; };
explorase = derive { name="explorase"; version="1.33.0"; sha256="0405q21ivvchmb37jksv46kwxgbmyiavznizn39asv6wrsvw62az"; depends=[limma rggobi RGtk2]; };
fCI = derive { name="fCI"; version="0.99.10"; sha256="1gknc8pqznxkgdgc403s59xl6x9s8cdb5iql0q88kk8jcqc2fgyl"; depends=[FNN gtools psych rgl VennDiagram zoo]; };
fabia = derive { name="fabia"; version="2.15.0"; sha256="1631f6q30cxzaw7vqjacr44hwzrjbvk0sw3v41zagpbqbbr11swx"; depends=[Biobase]; };
facopy = derive { name="facopy"; version="1.3.1"; sha256="091pgih7daxhz1lhynq98d5yfxv851dv64vl18dafsg3bp4k5ig5"; depends=[annotate cgdsr coin data_table DOSE FactoMineR ggplot2 GOstats graphite gridExtra igraph IRanges MASS nnet reshape2 Rgraphviz scales]; };
factDesign = derive { name="factDesign"; version="1.45.0"; sha256="08d7ma718s8rdbmk00jdbwn9d1g431iaff7hc4ra421drl95yql1"; depends=[Biobase]; };
farms = derive { name="farms"; version="1.21.0"; sha256="1c0k2ffjqfrhkw0d7h6a6sffh50qvbc7jqd3glgrvbwjnmsys34v"; depends=[affy Biobase MASS]; };
fastLiquidAssociation = derive { name="fastLiquidAssociation"; version="1.5.0"; sha256="0477z4inv374bv5qs6wr5lcndk0d4if4hf1qbwlvv070sh5001gi"; depends=[Hmisc LiquidAssociation WGCNA]; };
fastseg = derive { name="fastseg"; version="1.15.0"; sha256="12a308lr292nisf0k0wzk5mxazw4izkcsip5nlh826y2h9b2yc6q"; depends=[Biobase BiocGenerics GenomicRanges IRanges]; };
fdrame = derive { name="fdrame"; version="1.41.0"; sha256="1zmspa2mm7scv5lx83171hdn48y9vify58jcr6nxw15nj4lqbmsd"; depends=[]; };
ffpe = derive { name="ffpe"; version="1.13.0"; sha256="0444g47cg6ci1lflmz84vjms0p918iaz65cm6whxx4z3pfjc55ls"; depends=[affy Biobase BiocGenerics lumi methylumi sfsmisc TTR]; };
flagme = derive { name="flagme"; version="1.25.0"; sha256="0jj8rba2ggimwm709m2c78rpccvp9q8hx83c026pgmrryjv8qbzc"; depends=[CAMERA gplots MASS SparseM xcms]; };
flipflop = derive { name="flipflop"; version="1.7.5"; sha256="00rlr9mh3agvi1cy4bgb97bwmq0ipiajzljfwzvr03y4wkadvv9r"; depends=[GenomicRanges IRanges Matrix]; };
flowBeads = derive { name="flowBeads"; version="1.7.0"; sha256="1knzfj14hwggvc41bba2chrjnl709bh2wxwv268mw18crc1gs140"; depends=[Biobase flowCore knitr rrcov xtable]; };
flowBin = derive { name="flowBin"; version="1.5.0"; sha256="1728qzxpssh44ayk5bgjwdwzb98xalzciq7pzlcwg1yqgyxz81xv"; depends=[BiocGenerics class flowCore flowFP limma snow]; };
flowCHIC = derive { name="flowCHIC"; version="1.3.0"; sha256="1g6kkmcja3am6dawdkmhyz9pl9xqivnp95zqxh8vd3a4la0ysazb"; depends=[EBImage flowCore ggplot2 hexbin vegan]; };
flowCL = derive { name="flowCL"; version="1.7.0"; sha256="0n7gsvsfvfcn1ysc2kzv564hnn963rg6zwzx70vzp8lzvg55z8db"; depends=[Rgraphviz SPARQL]; };
flowClean = derive { name="flowClean"; version="1.5.1"; sha256="0w3bjvhy044cl6xdzk2q8xrvnshn49gkvq5b4sgwvqhj3nlnfpl4"; depends=[bit changepoint flowCore sfsmisc]; };
flowClust = derive { name="flowClust"; version="3.7.01"; sha256="06y8sg5mdjzn3d18m5b3753q2g4s4yxm1v8vb6pkdszq88255w6k"; depends=[Biobase BiocGenerics clue corpcor ellipse flowCore flowViz graph MCMCpack mnormt RBGL]; };
flowCore = derive { name="flowCore"; version="1.35.11"; sha256="110m6i17nvq6r5c9nskfmv9byj202p5i0fczr4fqv8fpcfkdnlz2"; depends=[BH Biobase BiocGenerics corpcor graph Rcpp rrcov]; };
flowCyBar = derive { name="flowCyBar"; version="1.5.0"; sha256="160vyp9pglsrv23m0118506bikwzi2mm9b1qgsrxjnzls2lqvjfa"; depends=[gplots vegan]; };
flowDensity = derive { name="flowDensity"; version="1.3.1"; sha256="17wvpscdffn1fsihnn0rcfn57cyfz75dz3giny8ha1scgzazy9zx"; depends=[car flowCore GEOmap gplots RFOC]; };
flowFP = derive { name="flowFP"; version="1.27.0"; sha256="15n57slfn0z4vzqhk38mfqzb22r6krafqyp11hv1xsllp8my2a5g"; depends=[Biobase BiocGenerics flowCore flowViz]; };
flowFit = derive { name="flowFit"; version="1.7.0"; sha256="079ygak8ysjh44l3gmvlc89x4argw15mlq380j77n19d3wqai8r9"; depends=[flowCore flowViz gplots kza minpack_lm]; };
flowMap = derive { name="flowMap"; version="1.7.0"; sha256="030dv51xwskrc97kkm72wxbfsq1qj4fy9nknvxaydn3y1r2wakcs"; depends=[abind ade4 doParallel Matrix reshape2 scales]; };
flowMatch = derive { name="flowMatch"; version="1.5.0"; sha256="1b81aik86m4y8n8khz7kxy2ibky7i06s9jzm4pydh41ypv6h0wv9"; depends=[Biobase flowCore Rcpp]; };
flowMeans = derive { name="flowMeans"; version="1.28.0"; sha256="038flcv69xn1yiflzl336xfjm93ca6ksgx55aj01inrnf6ks2696"; depends=[Biobase feature flowCore rrcov]; };
flowMerge = derive { name="flowMerge"; version="2.17.0"; sha256="1sc7xqp4vkgc84by4vmbj0iy0vsrwadglwxbziigjai0ijsgrvfn"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; };
flowPeaks = derive { name="flowPeaks"; version="1.11.0"; sha256="0ib9mgfq8lmakw2g0hj0dc75ifllpf5s9yfpkq3p5f6qqa8gncqw"; depends=[]; };
flowPlots = derive { name="flowPlots"; version="1.17.0"; sha256="1y4g2kjdha6qn79cyb9mxkkj33wd2jndrpnpd1p0x1pvnjlyxhas"; depends=[]; };
flowQ = derive { name="flowQ"; version="1.29.1"; sha256="1kxxbip929aqj51f9m14bm405anpb2n60gvn18147mhmsfq67lcx"; depends=[BiocGenerics bioDist flowCore flowViz geneplotter IRanges lattice latticeExtra mvoutlier outliers parody RColorBrewer]; };
flowQB = derive { name="flowQB"; version="1.13.0"; sha256="19z25lhjdlc1hq6gkqajhi80920zi89yryzwabdazbhb9i5f1ni0"; depends=[Biobase flowCore MASS]; };
flowStats = derive { name="flowStats"; version="3.27.0"; sha256="0vw3a426wa684fr8g2jh8c64dyfya0z5azz1ncfd7xszknyc51si"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS mvoutlier]; };
flowTrans = derive { name="flowTrans"; version="1.21.1"; sha256="0c45blakwi4x0mr40ss5m3gh9bf0cvy9lwid274swd4qwydqyy1l"; depends=[flowClust flowCore flowViz]; };
flowType = derive { name="flowType"; version="2.7.0"; sha256="0zrwf7h62jd5xgs0kqv34mh8q2knaiaj2adrd53i56jb514yfnb9"; depends=[BH Biobase flowClust flowCore flowMeans flowMerge Rcpp rrcov sfsmisc]; };
flowUtils = derive { name="flowUtils"; version="1.33.0"; sha256="0r7l8fbi3p1y7ql60czlqhxx4l0fzxv50phwkr5w85jxxldk2pjm"; depends=[Biobase corpcor flowCore flowViz graph RUnit XML]; };
flowVS = derive { name="flowVS"; version="1.1.0"; sha256="0g1zmcr1wd3xccx2z1akwk177innzrngmxc5r4hjanl37l0skrpq"; depends=[flowCore flowStats flowViz]; };
flowViz = derive { name="flowViz"; version="1.33.2"; sha256="11qbpf0yw1gjzgw3pb7mnqfvwd60nms4cwrwag8h36a5whfd158c"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; };
flowWorkspace = derive { name="flowWorkspace"; version="3.15.18"; sha256="042pfgpkpw5wqk15sfi0qn8d3ny06ihsya960m4m1nw0aypnx52r"; depends=[BH Biobase BiocGenerics data_table dplyr flowCore flowViz graph gridExtra lattice latticeExtra ncdfFlow RBGL RColorBrewer Rcpp Rgraphviz stringr XML]; };
flowcatchR = derive { name="flowcatchR"; version="1.3.3"; sha256="1ix5wgqldghlqf51b7z0ry31wah5mc01ad0bi0xp32sknrkmvb9p"; depends=[abind BiocParallel colorRamps EBImage rgl]; };
fmcsR = derive { name="fmcsR"; version="1.11.4"; sha256="1ah1gyrhcyv4kqxi4n8yj14mgjh6v9l820k5hzb7fwbw74kh2pa5"; depends=[BiocGenerics ChemmineR RUnit]; };
focalCall = derive { name="focalCall"; version="1.3.0"; sha256="1g3vk72xnzy2vsjjq7dnmmxiy29qg2bqij1iim9psb2zd6w387r5"; depends=[CGHcall]; };
frma = derive { name="frma"; version="1.21.1"; sha256="1xlbqnypb5xa416bdyqkjbzw44zywksl0ak4nmvdcn8ib8cdzggf"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; };
frmaTools = derive { name="frmaTools"; version="1.21.1"; sha256="13x1k763gdkh9mab1nvsa45z7b0v2q4ilvhv47fvwagi5r11jf5w"; depends=[affy Biobase DBI preprocessCore]; };
gCMAP = derive { name="gCMAP"; version="1.13.0"; sha256="06qb51rxxjqanh92g0cj6kwnrcbgkc2f0slav2bxkh2rkrjpyvcn"; depends=[annotate AnnotationDbi Biobase Category DESeq genefilter GSEABase GSEAlm limma Matrix]; };
gCMAPWeb = derive { name="gCMAPWeb"; version="1.9.0"; sha256="0xn1iyvrw3idhwszvipf3y69i1w1azr5hhgklg57v9wibnq02q9g"; depends=[annotate AnnotationDbi Biobase BiocGenerics brew gCMAP GSEABase hwriter Rook yaml]; };
gQTLBase = derive { name="gQTLBase"; version="1.1.26"; sha256="11w5k1p62a468frh4xckzi9ljim6bp8540xy1s2yblgr6jggx765"; depends=[BatchJobs BBmisc BiocGenerics bit doParallel ff ffbase foreach GenomicFiles GenomicRanges rtracklayer S4Vectors]; };
gQTLstats = derive { name="gQTLstats"; version="1.1.12"; sha256="0r4y8qpy8gva71ri4g2b4g606nhagryr323x9kmcg7hag9vy75bl"; depends=[AnnotationDbi BatchJobs Biobase BiocGenerics doParallel dplyr ffbase foreach gam GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gQTLBase IRanges limma reshape2 S4Vectors snpStats SummarizedExperiment VariantAnnotation]; };
gaga = derive { name="gaga"; version="2.15.1"; sha256="17ccfnvrqq6p9dynlacxw4797n1h9773ilmsh53mzs52w1k2cybm"; depends=[Biobase coda EBarrays mgcv]; };
gage = derive { name="gage"; version="2.19.0"; sha256="1g8i3w715s10azw7xyzq6gjmz5ilxll4qcf367jn6dwz8xnf15dr"; depends=[AnnotationDbi graph KEGGREST]; };
gaggle = derive { name="gaggle"; version="1.37.0"; sha256="1429xffj08m3dgfp6z34ngwzaq0wyjm3wv3cwfxzl5pzzy200k41"; depends=[graph rJava RUnit]; };
gaia = derive { name="gaia"; version="2.13.0"; sha256="10vpz16plzi651aj1f5h3iwz6nzrrdnl9sgx3sgv5wmks2haqij4"; depends=[]; };
gaucho = derive { name="gaucho"; version="1.5.0"; sha256="0kl8fw1n6dkqmrjp0xri3w2fhx25llrjag7j50m2xh371zfw9chc"; depends=[GA graph heatmap_plus png Rgraphviz]; };
gcrma = derive { name="gcrma"; version="2.41.0"; sha256="03ncgd26hmj4l0mnnif1cf5qg99ir66d0mafx7wamrr930m17v8x"; depends=[affy affyio Biobase BiocInstaller Biostrings XVector]; };
gdsfmt = derive { name="gdsfmt"; version="1.5.15"; sha256="1hhgg6kb11dbns664gn1vk5bxiaji9h6xgyxsrkbng3fi5d6qr4b"; depends=[]; };
geNetClassifier = derive { name="geNetClassifier"; version="1.9.3"; sha256="1vcbh910g6hsgqian6kf4vd62bf16m3bbycg7rn69rd5nhyn9b8x"; depends=[Biobase e1071 EBarrays minet]; };
geecc = derive { name="geecc"; version="1.3.0"; sha256="0s955yg31papyny42nnqq711hawk5nn3dqgsf24ldz93vjiif9dr"; depends=[gplots hypergea MASS]; };
genArise = derive { name="genArise"; version="1.45.0"; sha256="07xyy6wa22sa0ziqvy1dvpmpq11j56aw70kvj834da003yvabmg1"; depends=[locfit tkrplot xtable]; };
geneRecommender = derive { name="geneRecommender"; version="1.41.0"; sha256="0c06xg7jbcn4lnrkwgwwdjq383a7d34svf9cdqlaz5fc662nl5v0"; depends=[Biobase]; };
geneRxCluster = derive { name="geneRxCluster"; version="1.5.0"; sha256="1m5jxv0qhm68iv6rwy91nkx2mz9b7zh9mdz98gva8mb6gm88iiig"; depends=[GenomicRanges IRanges]; };
genefilter = derive { name="genefilter"; version="1.51.1"; sha256="0z0lgg38hf6g57xp9ah8wdksyifs28vdnmhkpgzmg5k8zbz4ikkb"; depends=[annotate AnnotationDbi Biobase survival]; };
genefu = derive { name="genefu"; version="2.0.3"; sha256="1b8jh5pbw0z7pf20phk39ajjk5riknllqy4p3rbx4r2x7kmsczkc"; depends=[AIMS amap biomaRt iC10 mclust survcomp]; };
geneplotter = derive { name="geneplotter"; version="1.47.0"; sha256="03vl60rhhfh8imp0ihx83gq9r64gdnh2gjdm7pzi4yc03afqgaw8"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; };
genoCN = derive { name="genoCN"; version="1.21.0"; sha256="10q16kch3gn6phx1zk3aii87f4liy5l6mp0kvjf29x6aam11l7c7"; depends=[]; };
genomation = derive { name="genomation"; version="1.1.23"; sha256="14wp0r990slj2jxwzjix8fy7pgh92i934rvpcjiwhh4a6qwy26ir"; depends=[data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr readr reshape2 Rsamtools rtracklayer]; };
genomeIntervals = derive { name="genomeIntervals"; version="1.25.3"; sha256="14ql99gny196nl8ss3pb9m0277nczx6qj9sj2vhwfrr9q9c3ja9a"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; };
genomes = derive { name="genomes"; version="2.15.0"; sha256="1a172fz97b6xg4w91dcjbdr9kx0grzf71qn2j7zlyz52dcqppybb"; depends=[Biostrings GenomicRanges IRanges RCurl XML]; };
genoset = derive { name="genoset"; version="1.23.8"; sha256="10j5pp4zgid812b3n5x4smnn6pvpxrvzmwp0ajcmf1s63fndkanp"; depends=[Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment]; };
genotypeeval = derive { name="genotypeeval"; version="0.99.3"; sha256="1a0dxfdlcdxmsih8imhvd4mk40lzg9p8sryccqmycw360nwbxh1h"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; };
gespeR = derive { name="gespeR"; version="1.1.2"; sha256="1mfsy2jca89qh22l95y8cd6bjgdss0p1zhprh87jq973w2saj1kf"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; };
ggbio = derive { name="ggbio"; version="1.17.3"; sha256="1c0sdaxq1f6p32wq3nd26brbkrz895v1dk7hhxjkw4i057kpvbjf"; depends=[Biobase BiocGenerics Biostrings biovizBase BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; };
ggtree = derive { name="ggtree"; version="1.1.19"; sha256="1jbgfpsa6xam40j5qhlykqab22v4z36r835yj7w1l4m69j7imf90"; depends=[ape Biostrings colorspace EBImage ggplot2 gridExtra jsonlite magrittr phytools reshape2]; };
girafe = derive { name="girafe"; version="1.21.1"; sha256="186r96xr416vx2wzib9kvb079mfjg50828l3fgg5nyp6x0rs9nrf"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; };
globaltest = derive { name="globaltest"; version="5.23.2"; sha256="0gvg92mmzgc2ms5lz3zvdg8rx1wsw0hrz9x3zl0sz08smpwzlbsb"; depends=[annotate AnnotationDbi Biobase survival]; };
gmapR = derive { name="gmapR"; version="1.11.1"; sha256="0fkj11xnasjacy9b4j404lj4pya74n2gaqzw6p9kcyg1kifxw0qr"; depends=[Biobase BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; };
goProfiles = derive { name="goProfiles"; version="1.31.0"; sha256="0nnc5idd3p969nhcsw2bjv7ws1qlb30sywhvpy8kcvk64wzz4jgw"; depends=[AnnotationDbi Biobase]; };
goTools = derive { name="goTools"; version="1.43.0"; sha256="104xj0q1151ch0b4sswnky6shscx6fps25ycmig1s1ingd8dqnby"; depends=[AnnotationDbi]; };
goseq = derive { name="goseq"; version="1.21.1"; sha256="175xg4qyy2iq9vmxsvd120qb9s3xn51ibsrvc1a3lrnrlii992fk"; depends=[AnnotationDbi BiasedUrn BiocGenerics mgcv]; };
gpls = derive { name="gpls"; version="1.41.0"; sha256="050db8ag8wpngfkw686r9vjvdgbpz0slrdnmkb0vcm5ijzm172b2"; depends=[]; };
gprege = derive { name="gprege"; version="1.13.0"; sha256="0z27521mjn5ipjq8wi3fbh2qw4k1q694l8268f8lypr9f357i1q4"; depends=[gptk]; };
graph = derive { name="graph"; version="1.47.2"; sha256="0db15kd5qf993qdbr7dl2wbw6bgyg3kiqvd1iziqdq6d2vvbpzbj"; depends=[BiocGenerics]; };
graphite = derive { name="graphite"; version="1.15.2"; sha256="1y3iqrrw0vj2r7n6d3nsxhjrmh7q18jryiiqin3xbqa8c58l7y2l"; depends=[AnnotationDbi BiocGenerics graph rappdirs]; };
groHMM = derive { name="groHMM"; version="1.3.1"; sha256="1bwa2dc2hmp34grl1ki8wzqn5v12afrmcw0igdiv4j8sfgybw3w7"; depends=[GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; };
gtrellis = derive { name="gtrellis"; version="1.1.2"; sha256="03i6ph9fjphpcpf3gjiwi3r3zgdmhf5rj85yn21n1gq934p29ksb"; depends=[circlize GetoptLong]; };
gwascat = derive { name="gwascat"; version="2.1.19"; sha256="0xs21rc43kkxivvbz6km81h6wx2f27837hkfq0fg5j5w2dzbqz66"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 gQTLstats graph Gviz IRanges Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; };
h5vc = derive { name="h5vc"; version="2.3.0"; sha256="1cl00k13x03sm60gfkxmaf6ba9kw4186cnik08zn446fipxqypla"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges reshape rhdf5 Rsamtools S4Vectors]; };
hapFabia = derive { name="hapFabia"; version="1.11.0"; sha256="1jbj1bxqmvldpbbyq6d854srvzsr14jva1711zn4387b407knz7w"; depends=[Biobase fabia]; };
hiAnnotator = derive { name="hiAnnotator"; version="1.3.2"; sha256="104d6wp331dvsdk5p9l7m70xr9jrwx0nzlrapi95c0p1nr3wr7bl"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; };
hiReadsProcessor = derive { name="hiReadsProcessor"; version="1.3.0"; sha256="16gcjaiw8j82y5wzcbhh3yjym8xi4dqsf30i64ah6rb30i3bk716"; depends=[BiocGenerics BiocParallel Biostrings GenomicAlignments GenomicRanges hiAnnotator plyr rSFFreader sonicLength xlsx]; };
hierGWAS = derive { name="hierGWAS"; version="0.99.4"; sha256="029p8ri65rhxbq59bbnr1rdyr8bdwm2biqac4p2sr6h0fvbmq07k"; depends=[fastcluster fmsb glmnet]; };
hopach = derive { name="hopach"; version="2.29.0"; sha256="08hfq74s3a4q94awhw6fiwlfnnv3rhkfpz56jbcyp6bi6y1rrp9d"; depends=[Biobase BiocGenerics cluster]; };
hpar = derive { name="hpar"; version="1.11.2"; sha256="0i0f1wvla9aa0i6yykmi4i5l30n67bjiaz7ysvg57pwixsbbs5gn"; depends=[]; };
htSeqTools = derive { name="htSeqTools"; version="1.15.1"; sha256="0pv6csw7bgknjm0q42hrf3x22bx3xs0xm9hq9i46plwglq6c8kvn"; depends=[Biobase BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges MASS]; };
hyperdraw = derive { name="hyperdraw"; version="1.21.0"; sha256="0w1rcaw5fysj257c8ybcvmrdayvkcmfl670ysg2wcp8nrgv6z7vg"; depends=[graph hypergraph Rgraphviz]; };
hypergraph = derive { name="hypergraph"; version="1.41.0"; sha256="06fvmda8x81bv5bn21pmvpfx9ni01l23q1ph9rh3qj803mwa0d72"; depends=[graph]; };
iASeq = derive { name="iASeq"; version="1.13.0"; sha256="0d9ciilyc0aps3mnhdwvy69lv1m0fmv4gjdwr6rpdc7xsrrap35y"; depends=[]; };
iBBiG = derive { name="iBBiG"; version="1.13.0"; sha256="09g9inaxmc94vfjv247c5ni591lnapmch5dq9s2havfdyss56n69"; depends=[ade4 biclust xtable]; };
iBMQ = derive { name="iBMQ"; version="1.9.0"; sha256="08snz38d1jig0n989bwyvcayb83xyfb1cp927zvmxrnsyi7piqda"; depends=[Biobase ggplot2]; };
iChip = derive { name="iChip"; version="1.23.0"; sha256="081s08v7n8l80r5dlfxdwibw5gsr7rjm6hgc0r5fhzpw7kb5svir"; depends=[limma]; };
iClusterPlus = derive { name="iClusterPlus"; version="1.5.0"; sha256="0r0pbp9kn9rsv3hj7fai55cgfwa31rlg8zd7x8311ajg2q3kxwfd"; depends=[]; };
iGC = derive { name="iGC"; version="0.99.2"; sha256="08j8w9wligdi630d3b3hadr35dcxghljjbbwj4p9q52dnx527v1r"; depends=[data_table plyr]; };
iPAC = derive { name="iPAC"; version="1.13.0"; sha256="02cawn395mymgxmhrcff9q57dwb8xrwba7z8dg6jzda3kbixzc1x"; depends=[Biostrings gdata multtest scatterplot3d]; };
iSeq = derive { name="iSeq"; version="1.21.0"; sha256="0jp1p56wqdyiamd5jqiqz0sdc5snp1cds48x7449m4lsaqzmc3l4"; depends=[]; };
ibh = derive { name="ibh"; version="1.17.0"; sha256="1rcnmsg4iynsk9cfx6bwym9akhxapqkq31cgj6a9rb00l5g75fx3"; depends=[]; };
idiogram = derive { name="idiogram"; version="1.45.0"; sha256="1kpviyzmfkqkrdy8gchdr0zlxzrg3qv8sg6r0b3qk27gii2bsprf"; depends=[annotate Biobase plotrix]; };
illuminaio = derive { name="illuminaio"; version="0.11.2"; sha256="15jv3kxyf1d0j20vvq8m7swqwwywl2235qrvwvyiagibx9g2baac"; depends=[base64]; };
imageHTS = derive { name="imageHTS"; version="1.19.2"; sha256="1rxzrixp17cj17f23jmxbf80qdwyyplzdad70x451rijzjliwmxg"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; };
immunoClust = derive { name="immunoClust"; version="1.1.2"; sha256="0w1di2xg2n8815k0a29sfxzgmn09cwf5ni8d81s5r1vh5q1j2wab"; depends=[flowCore lattice]; };
impute = derive { name="impute"; version="1.43.0"; sha256="1wp02zd2vgpkalz830kah5135amrhv0gj6nqr3hs34yw3nnzcvxa"; depends=[]; };
inSilicoDb = derive { name="inSilicoDb"; version="2.5.1"; sha256="09ilg2yv2dq5bkv6pvslrdw627zhibc9yyc11chxlb6d675n69jr"; depends=[Biobase RCurl rjson]; };
inSilicoMerging = derive { name="inSilicoMerging"; version="1.13.0"; sha256="0zaqwachxn3anbjyn0akv0n2djg08475cdxz7c44ja635r1f6y1j"; depends=[Biobase]; };
intansv = derive { name="intansv"; version="1.9.1"; sha256="04ky0l2q8ph34gdi3k5h24pj36nz4hj1fj2f36ph5w6b7pi8w2k1"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; };
interactiveDisplay = derive { name="interactiveDisplay"; version="1.7.3"; sha256="075gr1qa90kkmsxinv83s0wvqwm28wm0z637md3xx06yd8xgnpyi"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; };
interactiveDisplayBase = derive { name="interactiveDisplayBase"; version="1.7.3"; sha256="14vr1gcr0mvbvlf90dp3w394fcxidwqqv1sdzd1x4p6ji7sajpf1"; depends=[BiocGenerics shiny]; };
inveRsion = derive { name="inveRsion"; version="1.17.0"; sha256="1km1h75dh5q505x1ddlhvyqxy4c10wvlviiz2l8sv3g3m9mbd26h"; depends=[haplo_stats]; };
iontree = derive { name="iontree"; version="1.15.0"; sha256="0frq4f357n5w08nwz3m7s0hv858kgcnlvxb4907yrg1b11zpfvmm"; depends=[rJava RSQLite XML]; };
isobar = derive { name="isobar"; version="1.15.1"; sha256="1i4zlfxbx94yb70bvd3wzlald2fi9ix4bhdlyim490rcdhb0lhyr"; depends=[Biobase distr plyr]; };
iterativeBMA = derive { name="iterativeBMA"; version="1.27.0"; sha256="18g04l2bksjc2563kd2fmjygpci6pdw9lxv4ax0kpbfvc7zwbz17"; depends=[Biobase BMA leaps]; };
iterativeBMAsurv = derive { name="iterativeBMAsurv"; version="1.27.0"; sha256="1l36lmxlwq16kzh8i8nbi8bbrgqc7im1b5pcc170q89x6rfgvyf7"; depends=[BMA leaps survival]; };
jmosaics = derive { name="jmosaics"; version="1.9.0"; sha256="00c84fh5798yyzmsy985b79fcf2yz8y8am13dj7xgnzxl5nj32v1"; depends=[mosaics]; };
joda = derive { name="joda"; version="1.17.0"; sha256="0y3z4shl1vmx19wwp6msz5igjgmy5rkygj7ikpjjcksrjdwqskrz"; depends=[bgmm RBGL]; };
kebabs = derive { name="kebabs"; version="1.3.3"; sha256="10pnr5fd2ni4w69qp30q81d1rbyy0844sx1fskmv15d5ld2w5wkq"; depends=[Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; };
keggorthology = derive { name="keggorthology"; version="2.21.0"; sha256="1d3dz61llgmdnyqxqwv03pacfs97lzynzpjpmn7grf7bbpybjk2q"; depends=[AnnotationDbi DBI graph]; };
lapmix = derive { name="lapmix"; version="1.35.0"; sha256="1sps41l210h782bry6n8h55ghnlqn7s5dx0bx2805y5izz01linm"; depends=[Biobase]; };
ldblock = derive { name="ldblock"; version="0.99.2"; sha256="092pjcb3dma3iz7s3m4nl6i2f1smr66f9banryi9b1vc0kc3xd2s"; depends=[Matrix snpStats]; };
les = derive { name="les"; version="1.19.0"; sha256="1b3zcvflwyybrh9pf33a0fn5qz6918sszjf0n666iqd3hh7zph8z"; depends=[boot fdrtool gplots RColorBrewer]; };
limma = derive { name="limma"; version="3.25.16"; sha256="1hn9qpwncjyrv1ylxqfvf8gkx0lz58nijf8g3cwhdvg00n94igwh"; depends=[]; };
limmaGUI = derive { name="limmaGUI"; version="1.45.2"; sha256="1s1dn14d5yhmfqj4r3kaxavpxaxsjw2492fpijgq0v8dnwqhz190"; depends=[AnnotationDbi BiocInstaller gcrma limma R2HTML tkrplot xtable]; };
lmdme = derive { name="lmdme"; version="1.11.0"; sha256="0j41rfvbhz31vniax7njnslxd94lws4jjfv3hc2s1ihxnj41dcma"; depends=[limma pls]; };
logicFS = derive { name="logicFS"; version="1.39.0"; sha256="1sz4bxsg76437j42i6cpbqvj5a35q7dwhya4yh1gmknqjrrcrv56"; depends=[LogicReg mcbiopi]; };
logitT = derive { name="logitT"; version="1.27.0"; sha256="13gglwkvwrc5xr44ynz10qzyksry0wamk9mjlsfb18c2ncbnyypq"; depends=[affy]; };
lol = derive { name="lol"; version="1.17.1"; sha256="0adj2bg8akb3z0w3wqj6bdlypf9c587k5c2npx0l21hgy4qv7p8k"; depends=[Matrix penalized]; };
lpNet = derive { name="lpNet"; version="2.1.2"; sha256="0qy2ardh00gf3xkhqphvmdsnsxa4pjrdpcxpjs53nw68bcsbgy9g"; depends=[lpSolve nem]; };
lumi = derive { name="lumi"; version="2.21.2"; sha256="0nfkzf11lnpvyqng8ns6nf23qkap04fir8cbqngnzm6yddfk33dq"; depends=[affy annotate AnnotationDbi Biobase DBI GenomicFeatures GenomicRanges KernSmooth lattice MASS methylumi mgcv nleqslv preprocessCore RSQLite]; };
mAPKL = derive { name="mAPKL"; version="1.1.1"; sha256="1wya7fhr6xbjdc61q0hk7k2y3iivashdksqj6b8459c9cr1mn5sl"; depends=[AnnotationDbi apcluster Biobase clusterSim e1071 igraph limma multtest parmigene]; };
mBPCR = derive { name="mBPCR"; version="1.23.0"; sha256="0c0idj213l8gwxkh9sb03dr4jhlbwvkpghldccbjrqnk4jqs4zpp"; depends=[Biobase oligoClasses SNPchip]; };
mQTL_NMR = derive { name="mQTL.NMR"; version="1.3.0"; sha256="05q3p6pxi5x89z3zyrvdv5p2lzwr3as3zwcg8k0zm70liyczqcbx"; depends=[GenABEL MASS outliers qtl]; };
maCorrPlot = derive { name="maCorrPlot"; version="1.39.0"; sha256="14p6cliik2ar0x8q4x66p43lsdbz11sqa7szafqvk7aw3pbszgh4"; depends=[lattice]; };
maPredictDSC = derive { name="maPredictDSC"; version="1.7.0"; sha256="0mfip8h5brd2ri4cnbcsdc7h7m94qq3afl2amvz8l3gj38y21gvk"; depends=[affy AnnotationDbi caret class e1071 gcrma limma MASS ROC ROCR]; };
maSigPro = derive { name="maSigPro"; version="1.41.0"; sha256="1m8dzdas2063wvxi0apn1g4mbh365wpi29wx4acs3frxvhw9ll3g"; depends=[Biobase limma MASS Mfuzz]; };
maanova = derive { name="maanova"; version="1.39.0"; sha256="1m3ikf3r99q0zq3lrkq88vhs8k9z2y39rsv0w7yq4gimj42fxfb6"; depends=[Biobase]; };
macat = derive { name="macat"; version="1.43.0"; sha256="1h4yi0a5mpikqq30rc90xprfjvhjlc6f9yjzlw8iynv4kgxajymk"; depends=[annotate Biobase]; };
made4 = derive { name="made4"; version="1.43.0"; sha256="0jh90rhwp1qdiz5jfkp87xdxbzkb1r10rphjikr025vf5zk9ipfv"; depends=[ade4 gplots RColorBrewer scatterplot3d]; };
maigesPack = derive { name="maigesPack"; version="1.33.0"; sha256="1sig032263lapric0hh6bmimjbq4hbarzdqp6k2pzhsc92dyybrl"; depends=[convert graph limma marray]; };
makecdfenv = derive { name="makecdfenv"; version="1.45.0"; sha256="0ybyimcd7hkb2dy9cihy28h53ybijn5bdrlibwmxwbb8wxbqczag"; depends=[affy affyio Biobase zlibbioc]; };
manta = derive { name="manta"; version="1.15.0"; sha256="0yf85qzvs2ngqiw98pmc3c6zdjphimjnkmd64bnv05aclpkadz7b"; depends=[caroline edgeR Hmisc]; };
marray = derive { name="marray"; version="1.47.1"; sha256="04xvjs3ni8g4nqy8z89q0jrfy5df8spm6wgd3lx1d31mbi87snm9"; depends=[limma]; };
maskBAD = derive { name="maskBAD"; version="1.13.0"; sha256="1j187m0qbri49a148m8nnsqfpngzy3l3r9r01wnp0jfc7nfbq5dl"; depends=[affy gcrma]; };
massiR = derive { name="massiR"; version="1.5.0"; sha256="19snv6w1xvysd9090lmnk6f7vkfgr3q0aqxfp50fp4hgfamvfm7r"; depends=[Biobase cluster diptest gplots]; };
matchBox = derive { name="matchBox"; version="1.11.0"; sha256="1wnn14l0qfxklz2ljqczq7n22926333d8l68jy90ak33wcfqmh5n"; depends=[]; };
mcaGUI = derive { name="mcaGUI"; version="1.17.0"; sha256="12xll5kpbwm3wcf047w6kaja6c0ghh6zzfblhmc7ixf43f5f8i53"; depends=[bpca foreign gWidgets gWidgetsRGtk2 lattice MASS OTUbase proto vegan]; };
mdgsa = derive { name="mdgsa"; version="1.1.0"; sha256="118b6h62i7yp26w1xqb4qdqrpwwkgp628g600hhzdb7w0prdk37a"; depends=[AnnotationDbi cluster DBI Matrix]; };
mdqc = derive { name="mdqc"; version="1.31.0"; sha256="1zqxbhf29bdd12g019y8nimgzbzghkmaj7iz6q2x97rbjd7kl90l"; depends=[cluster MASS]; };
meshr = derive { name="meshr"; version="1.5.1"; sha256="0z90bxqn5l0a9xgcdx784539xf8arni1ahj02k4j9k44pckl8sl5"; depends=[BiocGenerics Category cummeRbund fdrtool MeSHDbi S4Vectors]; };
messina = derive { name="messina"; version="1.5.0"; sha256="0hhhzw4nafsdjsl7m786315449yqppvfs82fgfw4mxav2dp5h7n2"; depends=[foreach ggplot2 plyr Rcpp survival]; };
metaArray = derive { name="metaArray"; version="1.47.0"; sha256="11vl7lzdsgcg28940lngchlvdi64cyjm0qc42h85dbkk4p55mbpx"; depends=[Biobase MergeMaid]; };
metaMS = derive { name="metaMS"; version="1.5.0"; sha256="1nd4b525yyya6xxfa373924z34qmz28nai14h5ww7kkczpjzig1s"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; };
metaSeq = derive { name="metaSeq"; version="1.9.0"; sha256="1z8i4c5fxdwvja77jvziq0djkdsis56b5491i579yb6ydcc0pc6b"; depends=[NOISeq Rcpp snow]; };
metaX = derive { name="metaX"; version="0.99.16"; sha256="0030yn17sjm4k1y5idzdsrjg68pm3v1gz2g8qpjniyg78hnanxk7"; depends=[ape BBmisc boot bootstrap CAMERA caret data_table DiffCorr DiscriMiner doParallel dplyr ggplot2 igraph impute lattice missForest mixOmics Nozzle_R1 pcaMethods pheatmap pls plyr preprocessCore pROC RColorBrewer RCurl reshape2 scatterplot3d SSPA stringr VennDiagram vsn xcms]; };
metabomxtr = derive { name="metabomxtr"; version="1.3.6"; sha256="1xlvipyrlkqj53dz9579687cr0z1lcndrkly1027af864f9j8qcc"; depends=[Biobase Formula multtest optimx plyr]; };
metagene = derive { name="metagene"; version="2.1.31"; sha256="17c4zal9siq6bi3qr4p63z7pilr42h830z84j6aknanwb7hmn6i8"; depends=[BiocParallel DBChIP GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges muStat R6 Rsamtools rtracklayer]; };
metagenomeSeq = derive { name="metagenomeSeq"; version="1.11.10"; sha256="0b9vylijb6gzri61qn8wkj9si1zrgznzqhxzib1aw9y71v8y8k05"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer]; };
metahdep = derive { name="metahdep"; version="1.27.0"; sha256="0kjd27brcvhfqbqk9r3fclbzf2np2zj88gi522y1c6vh3pc6fd22"; depends=[]; };
metaseqR = derive { name="metaseqR"; version="1.9.2"; sha256="1c92h11wsbf016h62az4da28wqrsm0shsxqymwj8bg94cjr054vw"; depends=[baySeq biomaRt brew corrplot DESeq EDASeq edgeR gplots limma log4r NBPSeq NOISeq qvalue rjson vsn]; };
methVisual = derive { name="methVisual"; version="1.21.0"; sha256="18kin1ibcc4ilfh59qgb0zilhvhvs0a1gmbg0lbvj2r0kbsk1ryy"; depends=[Biostrings ca gridBase gsubfn IRanges plotrix sqldf]; };
methyAnalysis = derive { name="methyAnalysis"; version="1.11.2"; sha256="0ja5pfw07qrpn687knvv4h81j1bl1bba0pkjpbbhi4xznw1syv0j"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges genoset Gviz IRanges lumi methylumi rtracklayer VariantAnnotation]; };
methylMnM = derive { name="methylMnM"; version="1.7.0"; sha256="08y13kkmafn2h55wwkgs1mpskb4i2wpxzzgjdr9gb3ns06qc9799"; depends=[edgeR statmod]; };
methylPipe = derive { name="methylPipe"; version="1.3.6"; sha256="1225bkl0snr9ysknc1nbl8z3saipibfg5j8r4fqar6b4vhvi54cc"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; };
methylumi = derive { name="methylumi"; version="2.15.2"; sha256="174hikk5flwylifv7n8n67aps4np06klw240bdzfr347r8yrvikp"; depends=[annotate AnnotationDbi Biobase BiocGenerics genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; };
mgsa = derive { name="mgsa"; version="1.17.0"; sha256="1nic4bgk3g3j2l6vr3i3msmid2bz0n7bq8f8zq26n45sr37wb4wq"; depends=[gplots]; };
miRLAB = derive { name="miRLAB"; version="0.99.3"; sha256="0c0cf7phg7420hwpi7p08ghmfllsiv3gdwnljipb38hqwc4n5p9a"; depends=[energy entropy glmnet gplots Hmisc httr impute limma pcalg RCurl Roleswitch stringr]; };
miRNApath = derive { name="miRNApath"; version="1.29.0"; sha256="07r37gzn0y5cp4awj2i638i2cn019rnp7b4hnaqi3gc71sdzb25c"; depends=[]; };
miRNAtap = derive { name="miRNAtap"; version="1.3.2"; sha256="08i43qsgh2iryiv2qpgvxk9s9psiaklv58r6iv2xlzv5zhmflfn8"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; };
microRNA = derive { name="microRNA"; version="1.27.0"; sha256="1akq1yxc03v7jmpypmr8a9lx5h2nfdjp1y0433lyffbd49wia2gm"; depends=[Biostrings]; };
minet = derive { name="minet"; version="3.27.0"; sha256="1wnn3nlpa0ymk465ax2s65i3w9xplhwssvng9qs7p3v2z72p9nqp"; depends=[infotheo]; };
minfi = derive { name="minfi"; version="1.15.11"; sha256="14j5vw6vmfz2h85n4dmsnx7138mxwzfl961p8y5wh1brz4vr31iy"; depends=[beanplot Biobase BiocGenerics Biostrings bumphunter genefilter GenomeInfoDb GenomicRanges GEOquery illuminaio IRanges lattice limma MASS matrixStats mclust mixOmics nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; };
mirIntegrator = derive { name="mirIntegrator"; version="0.99.5"; sha256="0r8l1lgf9rdxnr0dvc8r05ahjf3q0r4syy9mzx4p3f04s0c78q3h"; depends=[AnnotationDbi ggplot2 graph Rgraphviz ROntoTools]; };
missMethyl = derive { name="missMethyl"; version="1.3.5"; sha256="12g2g1x7xzvqrx3fxn56714jg5q6kmnh8vf74axjkjyzg4vcx3jx"; depends=[limma methylumi minfi ruv statmod stringr]; };
mitoODE = derive { name="mitoODE"; version="1.7.0"; sha256="182ifqh1g1yz8rbsxdqgk4hzlz3dwy0d03iklbg39cxy6qhgxqg4"; depends=[KernSmooth MASS minpack_lm]; };
mmnet = derive { name="mmnet"; version="1.7.0"; sha256="0za8a3j2fzyi15hd7l3ccw5qy3lyl7vihbcbixaw2kb81hmpphsa"; depends=[Biobase biom flexmix ggplot2 igraph KEGGREST Matrix plyr RCurl reshape2 RJSONIO stringr XML]; };
mogsa = derive { name="mogsa"; version="1.1.5"; sha256="1xn2rrp9s3d84i7ln37iblnxadl1dsi7qd98k5xz71kq0v1ljpy4"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; };
monocle = derive { name="monocle"; version="1.3.0"; sha256="1ir0f80nsrvpl4i441irprd4pk1f53dxf1jnvnjg5zrkj7dz3wrw"; depends=[Biobase BiocGenerics cluster combinat fastICA ggplot2 igraph irlba limma matrixStats plyr reshape2 VGAM]; };
mosaics = derive { name="mosaics"; version="2.3.0"; sha256="1jv5sv6xyh5i5m7kypgwc5g3sfsf0n5n683gijxcvrrwpvvfpnqy"; depends=[IRanges lattice MASS Rcpp]; };
motifRG = derive { name="motifRG"; version="1.13.0"; sha256="01k47padfs393pprjyz9pp9z6vjqlxi6x10y51mhg0anqfb1sar2"; depends=[Biostrings BSgenome IRanges seqLogo XVector]; };
motifStack = derive { name="motifStack"; version="1.13.7"; sha256="0d6aw0fg4i2wy5cq59mshn893d9l0jxa7rcijjkpayb5j0w7jwg8"; depends=[ade4 Biostrings grImport MotIV scales XML]; };
motifbreakR = derive { name="motifbreakR"; version="0.99.8"; sha256="06sy9lpqp10qbwwdvi5y5y06vvv7jn6i2cd5xz1php1c5mqjf7yn"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr TFMPvalue VariantAnnotation]; };
msa = derive { name="msa"; version="1.1.1"; sha256="0nqgx1zb3n8kk2l3dgilsamwzadnddif39q5br7qs9xl38hag4nr"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; };
msmsEDA = derive { name="msmsEDA"; version="1.7.0"; sha256="1hywj0vvrqq1zg62gr1rk4sblm201hgwz5kd78819apw5jf50fwd"; depends=[gplots MASS MSnbase RColorBrewer]; };
msmsTests = derive { name="msmsTests"; version="1.7.0"; sha256="1qvi91shpy02irppq6g6lq43sp3rk2j7n1nfnm2p9767rdhbj13b"; depends=[edgeR msmsEDA MSnbase qvalue]; };
mtbls2 = derive { name="mtbls2"; version="0.99.10"; sha256="1b95vss8zq2v5zin22pmpnvwbhd68ykj8jy1qbpss4jxqvq7jmpa"; depends=[]; };
multiscan = derive { name="multiscan"; version="1.29.0"; sha256="0rp1nc8vjr8b0v9bcwrnsvdfklan0zc2cilrmwz1ikz0k5gnc0sq"; depends=[Biobase]; };
multtest = derive { name="multtest"; version="2.25.2"; sha256="1gby3am0rp62lsijhbr8yx8y457yhrv2ghdb41kl53r59mw8ba4z"; depends=[Biobase BiocGenerics MASS survival]; };
muscle = derive { name="muscle"; version="3.11.0"; sha256="1s3apdcd0qj08bswn7smj7b93yv9qar7wrzyfkp5z3m16jgz979x"; depends=[Biostrings]; };
mvGST = derive { name="mvGST"; version="1.3.0"; sha256="1chskyx9hgymxg57p6y98rw743lapssx18axvl0r9f2zsmmfz9bn"; depends=[annotate AnnotationDbi GOstats gProfileR graph Rgraphviz stringr topGO]; };
mygene = derive { name="mygene"; version="1.5.2"; sha256="0x40bnll85v94dnfpqrs8d9kx0zmdjbvgnqhcin1k9bshxqkypd9"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; };
myvariant = derive { name="myvariant"; version="0.99.0"; sha256="1m8vml13dirivh4gw256bjsd852pliwi42way2670jfavryw9hjp"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; };
mzID = derive { name="mzID"; version="1.7.1"; sha256="1pp0zfffz91g16y1kr81mbham64g00mm3q539ykj5az34g5q1fcm"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; };
mzR = derive { name="mzR"; version="2.3.3"; sha256="08s8zj6na7gwjcpqq4a6rgl81dybg8lvj70smr4xx9n97jghni90"; depends=[Biobase BiocGenerics ProtGenerics Rcpp zlibbioc]; };
ncdfFlow = derive { name="ncdfFlow"; version="2.15.5"; sha256="0qxn979mdgv8gnys6www2965qg3lrd4zwj1j0gp2dpgq1m3yms0d"; depends=[BH Biobase flowCore flowViz Rcpp RcppArmadillo zlibbioc]; };
neaGUI = derive { name="neaGUI"; version="1.7.0"; sha256="198b0vrr5qp66z4sccwy6rh8sjxpw3qjkdryygg1baxq91ra76p1"; depends=[hwriter]; };
nem = derive { name="nem"; version="2.43.0"; sha256="1d357gh8binh0fwg1z0mzjzq3nyhazg9dnnf7aqk6gjfgsjda9i8"; depends=[boot e1071 graph limma plotrix RBGL RColorBrewer Rgraphviz statmod]; };
netbenchmark = derive { name="netbenchmark"; version="1.1.8"; sha256="0cn1bwjpla57ya5axmy51qx9k048f3ws7bj1n7k2y3ap8cwk36yp"; depends=[c3net corpcor fdrtool GeneNet Matrix minet PCIT pracma randomForest Rcpp]; };
netbiov = derive { name="netbiov"; version="1.3.1"; sha256="1v1iddwgz7nn0flgald0nrg96wm8pvdlwjnh8bql8y5x5sm58lmv"; depends=[igraph]; };
nethet = derive { name="nethet"; version="1.1.1"; sha256="1nji5cmk5b7zlchpxdm7y4pkmj0iy1azafxlycr1h5ghzsl47mmd"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network parcor]; };
netresponse = derive { name="netresponse"; version="1.19.0"; sha256="0blgcfbhwns4khnsd3m2yafmihr63kh3zsf7imphim0cdrx67xks"; depends=[dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape Rgraphviz]; };
networkBMA = derive { name="networkBMA"; version="1.11.0"; sha256="09wf696s8n30nnadfds58flv8sv2gamgnw6pzz80isfc3178h1n6"; depends=[BMA Rcpp RcppArmadillo RcppEigen]; };
nnNorm = derive { name="nnNorm"; version="2.33.0"; sha256="1ml2z7cds83ff8fpmagfmymnqg66r2jgi32r840c87gk2vakakrm"; depends=[marray nnet]; };
nondetects = derive { name="nondetects"; version="1.5.0"; sha256="0178ci017kxgpbgjgkgzpjcw1qyz5ajx8qv9pbv76airwkhbharf"; depends=[Biobase HTqPCR]; };
npGSEA = derive { name="npGSEA"; version="1.5.1"; sha256="0yh0cj6sj4r8sqv8xszpzws9sdxf7xji6sw0vrn6yn6zfmfjkib0"; depends=[Biobase BiocGenerics GSEABase]; };
nucleR = derive { name="nucleR"; version="2.1.0"; sha256="0w9hmrahbk14gijv1ngps70m5f9lijbqr1lgpdbrjcqn7ff96yrq"; depends=[Biobase BiocGenerics GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; };
nudge = derive { name="nudge"; version="1.35.0"; sha256="1135k3nz8613vrib7fxmn669f31h5k1szy0r20qwmji28806arrk"; depends=[]; };
occugene = derive { name="occugene"; version="1.29.0"; sha256="1vlm93r8xxp4dl8yv3hcg618vc5s7wbn7kcw4qpk8kyqaqcjqw2r"; depends=[]; };
oligo = derive { name="oligo"; version="1.33.1"; sha256="1vi1jy6nb34sg4hhqwirddg1rgm6rhf3mx1fcjq8blfx9mz6nvzb"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; };
oligoClasses = derive { name="oligoClasses"; version="1.31.1"; sha256="0likyfm4xq6s34l9pj7n3my04zrfvrhrcwd1ydbg7jpss2piy4lm"; depends=[affyio Biobase BiocGenerics BiocInstaller Biostrings ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; };
omicade4 = derive { name="omicade4"; version="1.9.3"; sha256="00dr419qd563d75srypc02j6m5v281995mrh0r6fylz5bmi9bbks"; depends=[ade4 made4]; };
oneChannelGUI = derive { name="oneChannelGUI"; version="1.35.0"; sha256="1diclgl4zkzzyz705cyqx983bw4zqw03rx7fn9515w0ifl0bk1r4"; depends=[affylmGUI Biobase Biostrings chimera IRanges Rsamtools siggenes tkrplot tkWidgets]; };
ontoCAT = derive { name="ontoCAT"; version="1.21.0"; sha256="10d0a0fxg2h9gf6d1jbilxxg8irbqb1k526689qkdn2zh0qjvv04"; depends=[rJava]; };
openCyto = derive { name="openCyto"; version="1.7.4"; sha256="1q07s7rv19yahlpjpvsrhbvld6n2bf7jv7lfrgs6syfl3fwrs008"; depends=[Biobase clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; };
oposSOM = derive { name="oposSOM"; version="1.5.4"; sha256="0f06wmy1n9gl41x4x7q1fcfxaw6y6qkrmb4ypg9j6v7xjhjpfj03"; depends=[ape Biobase biomaRt fastICA fdrtool igraph KernSmooth pixmap scatterplot3d som]; };
pRoloc = derive { name="pRoloc"; version="1.9.6"; sha256="01gk4xnij5l4sk0c4km94i5b26vjfm8qhh3irb7xwfijank7mxd9"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class e1071 FNN ggplot2 gtools kernlab knitr lattice MASS mclust MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; };
pRolocGUI = derive { name="pRolocGUI"; version="1.3.2"; sha256="08q1cavlxryx9isn2wsw8r0bv795hgzkyfx95ycxxdwh6vdvnnyl"; depends=[DT MSnbase pRoloc scales shiny]; };
paircompviz = derive { name="paircompviz"; version="1.7.0"; sha256="0sf80ji20q6kaqw2747an9b51xxwhl55yj5y7q6j68gif1ndkzl4"; depends=[Rgraphviz]; };
pandaR = derive { name="pandaR"; version="1.1.21"; sha256="1bb8ivmilmccjdpiy6a5jnz0pxkvqmgsk7mc06ii60wxblg51n1n"; depends=[igraph matrixStats]; };
panp = derive { name="panp"; version="1.39.0"; sha256="163yii12bhw0skzhwrjbavpsgsl2aygj8x9cilzj9pqsqakvinna"; depends=[affy Biobase]; };
parglms = derive { name="parglms"; version="1.1.2"; sha256="1220yidkib92yhhih789k4q14dfjgnl9g3fgb8pi6nnqjzn1k62n"; depends=[BatchJobs BiocGenerics doParallel foreach]; };
parody = derive { name="parody"; version="1.27.0"; sha256="06lrzix8ydc41siy21fqkf3z6krj07p5v38pzan8jzzhqpwlq4iz"; depends=[]; };
pathRender = derive { name="pathRender"; version="1.37.0"; sha256="0iw7gsbjccazz1pip75czrzxrnmmw8iyzkzxwz6yc7p23y68xlgd"; depends=[AnnotationDbi graph RColorBrewer Rgraphviz]; };
pathifier = derive { name="pathifier"; version="1.7.0"; sha256="1zfhs2qkl20ryfp6zq6xrbavdgcfgw27b50pjx8p5maqx21qcgyh"; depends=[princurve R_oo]; };
pathview = derive { name="pathview"; version="1.9.1"; sha256="1fg2mmcbyndj1ddhvzz071v3qrssqkbkiy7nh72mbkh9m9k7a9vc"; depends=[AnnotationDbi graph KEGGgraph KEGGREST png Rgraphviz XML]; };
paxtoolsr = derive { name="paxtoolsr"; version="1.3.1"; sha256="0pv4zcl12yxidiy3wd0kc10p5n561348fbvdpzhjdz12gjdr3j41"; depends=[plyr RCurl rJava rjson XML]; };
pcaGoPromoter = derive { name="pcaGoPromoter"; version="1.13.1"; sha256="0a1yfi16sadp5fj112mlq9har0yggp8amn8v4v18jzfrb8aiacsj"; depends=[AnnotationDbi Biostrings ellipse]; };
pcaMethods = derive { name="pcaMethods"; version="1.59.0"; sha256="12b8qdd38xgpzisz0lm9xkwq22z5ciq7b8i11z3na1wynvim3nll"; depends=[Biobase BiocGenerics MASS Rcpp]; };
pcot2 = derive { name="pcot2"; version="1.37.0"; sha256="023ly5jgq8zc7k73mfqvra13mask54l7f62dznjh1dcjpv6xgw4p"; depends=[amap Biobase]; };
pdInfoBuilder = derive { name="pdInfoBuilder"; version="1.33.2"; sha256="026l6klpf93h42xgrbjyl022l0d0722gp7cqqgq4j8nb0wydg8l2"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
pdmclass = derive { name="pdmclass"; version="1.41.0"; sha256="0361s7d6n9wn65pxks3alr8ycqjcgv9dvvb2n9xqiqawyki1nvpm"; depends=[Biobase mda]; };
pepStat = derive { name="pepStat"; version="1.3.0"; sha256="003gqcs5m5b8mil9r1ydadhcc086nqmdk6i1xz4kkdpkcyxbyz7p"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; };
pepXMLTab = derive { name="pepXMLTab"; version="1.3.1"; sha256="09h6p9gn68jkqma6nxfh8g5q37cxbl7psbjsz4ms41l3mkn6pqng"; depends=[XML]; };
phenoDist = derive { name="phenoDist"; version="1.17.1"; sha256="12b3px6raw978wlgk7xq0xr82yp5wnjp2riajyykqjf5d521qapk"; depends=[e1071 imageHTS]; };
phenoTest = derive { name="phenoTest"; version="1.17.0"; sha256="09192i8zsamcd1s31w2w0ipr6ms8n0dznpdy83j0d280c5mmb20y"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus Hmisc hopach HTSanalyzeR limma mgcv SNPchip survival xtable]; };
phyloseq = derive { name="phyloseq"; version="1.13.2"; sha256="127n0smsgfgwb7by3hkagfhj8wn7xz5l73lf1vxmbzx8pal5lzni"; depends=[ade4 ape BiocGenerics biom Biostrings cluster data_table DESeq2 foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; };
piano = derive { name="piano"; version="1.9.4"; sha256="1gj5ka0kjyvzxvsr84bs9z1ia3glsq57b1k820lp5qhswapzmgps"; depends=[Biobase BiocGenerics gplots igraph marray relations]; };
pickgene = derive { name="pickgene"; version="1.41.0"; sha256="0gy0zzd00gn91gmxszdk1jsrglxknpxb7n957fw3rxy0zkbnbyzd"; depends=[MASS]; };
pint = derive { name="pint"; version="1.19.0"; sha256="0gl9yafqxjj8ndlcfvhmksbmcr7wmrb0p5c5pn293xsivfw590b7"; depends=[dmt Matrix mvtnorm]; };
pkgDepTools = derive { name="pkgDepTools"; version="1.35.0"; sha256="1z8aznll9a61n9a20fh1lkcg58ml1vk8kaw3id5jr7m55hl6gwrg"; depends=[graph RBGL]; };
plateCore = derive { name="plateCore"; version="1.27.0"; sha256="10br9gx4z41n63b36jc7ifjd7glj82lahrvfsprvrwl8c0xh5ii4"; depends=[Biobase flowCore flowStats flowViz lattice latticeExtra MASS robustbase]; };
plethy = derive { name="plethy"; version="1.7.0"; sha256="1ll6p7iji4gwjirj6w04zzb7c5kpyqhp3q9cnjixrzd4x3h3a8hz"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; };
plgem = derive { name="plgem"; version="1.41.0"; sha256="0gs4sawmvcfykdybmjk4sm4xizbldj7jp34zgs2zn42kr2xllz6k"; depends=[Biobase MASS]; };
plier = derive { name="plier"; version="1.39.0"; sha256="0ws919mrm8q719ssmxsxb4mqrq5ffhg81amkiw1s4pymqv5292z5"; depends=[affy Biobase]; };
plrs = derive { name="plrs"; version="1.9.0"; sha256="1lwnzbq2f75zh191g8zjljajq1qypvi2abzjsq5vfyqr3jnzpah8"; depends=[Biobase BiocGenerics CGHbase ic_infer marray quadprog Rcsdp]; };
plw = derive { name="plw"; version="1.29.0"; sha256="0rc31452gnzxxz5rwg932i680xx8azdvailn4id6fnkr5xqr1d5a"; depends=[affy MASS]; };
pmm = derive { name="pmm"; version="1.1.0"; sha256="05vix8j0rpvnyfkdb043d24vrbpdvkjmb8cqpqbg0knja178c8cg"; depends=[lme4]; };
podkat = derive { name="podkat"; version="1.1.3"; sha256="0q2in4lbd1y421gn0758kv54i5c92hxlhi14pr70n2jbk2izqf4d"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rsamtools]; };
polyester = derive { name="polyester"; version="1.5.0"; sha256="1qpnabv5c7wi1qw8lp3nvnv4dass7g6chz6blyg3k572p0zhzm47"; depends=[Biostrings IRanges limma logspline S4Vectors]; };
ppiStats = derive { name="ppiStats"; version="1.35.0"; sha256="10c3lnipwnpg0j938c1hxz1qgysc4n56lmsw7n6cra57zkr0whxj"; depends=[Biobase Category graph lattice RColorBrewer ScISI]; };
prada = derive { name="prada"; version="1.45.0"; sha256="140fv2yrgdf9ab26k14n0l6yd03vidi5y3dn4d1ybkyc66rx8xpa"; depends=[Biobase BiocGenerics MASS RColorBrewer rrcov]; };
prebs = derive { name="prebs"; version="1.9.2"; sha256="0vwnxnxy0v03mx7lc5avkhy5706nm3scf237nbrwxrpr9598y9r0"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; };
predictionet = derive { name="predictionet"; version="1.15.0"; sha256="19ikg3kzy6h0n4x3hp13n2f9g3qmgvvi700w1wiah0m4pm1xfhw1"; depends=[catnet igraph MASS penalized RBGL]; };
preprocessCore = derive { name="preprocessCore"; version="1.31.0"; sha256="1hm8066i4cxwiqqp5d9dx2dh5m5mrj7gpc3v06rhyk34mq2xkppc"; depends=[]; };
proBAMr = derive { name="proBAMr"; version="1.3.1"; sha256="0nz9imskb1dmf3i55vpk8ik406s60x80n9ds7nc67zg2xc62fw6v"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; };
procoil = derive { name="procoil"; version="1.19.0"; sha256="1jada5s60ir29dggixxma7m5amr3lbc11n8xxdnscx934zb428rz"; depends=[]; };
prot2D = derive { name="prot2D"; version="1.7.0"; sha256="0cpksbs1d8g8v1hdqfshj9imj55w4vlixnawvhlrpb7fj52izz4q"; depends=[Biobase fdrtool impute limma MASS Mulcom qvalue samr st]; };
proteinProfiles = derive { name="proteinProfiles"; version="1.9.1"; sha256="14gl7hfahmjfw7v9vjfbwb041dkpp7ykjckr64naphxk3nkijbc0"; depends=[]; };
proteoQC = derive { name="proteoQC"; version="1.5.0"; sha256="1khhy7y1w8pyccc3x18m497lh6a3kv7cyd3np04qwg277c3lqvas"; depends=[ggplot2 MSnbase Nozzle_R1 plyr Rcpp reshape2 rTANDEM seqinr VennDiagram XML]; };
puma = derive { name="puma"; version="3.11.0"; sha256="1dgi08p70fifsa42gj4jd1651d8laq03fa52qvicsmwkjxxyd83w"; depends=[affy affyio Biobase mclust oligo]; };
pvac = derive { name="pvac"; version="1.17.0"; sha256="0r9p96lp15883xix9gbr36pcjy7zg8yniag257mps58xagld0162"; depends=[affy Biobase]; };
pvca = derive { name="pvca"; version="1.9.0"; sha256="1xi72iwarx3784l5hjf7vmwindsz4fbah5g9y2a2fllr5mjh421b"; depends=[Biobase lme4 Matrix vsn]; };
pwOmics = derive { name="pwOmics"; version="1.1.14"; sha256="12w5k9l2nf17hrfvdn02sdylsig6y5kr29r5vpjdrq1wxwc68izs"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots igraph rBiopaxParser STRINGdb]; };
qcmetrics = derive { name="qcmetrics"; version="1.7.0"; sha256="1qrhl7w131yzkvck9ifqf966lmh8f9y9xlmrg2g3dgh29vgww54b"; depends=[Biobase knitr Nozzle_R1 pander S4Vectors xtable]; };
qpcrNorm = derive { name="qpcrNorm"; version="1.27.0"; sha256="0lmk9ksfrrw8zvhq20kg3kv0aqr8wx342nmw7zxvjv7l8z3d33sf"; depends=[affy Biobase limma]; };
qpgraph = derive { name="qpgraph"; version="2.3.6"; sha256="0qcm1j2xjgcx2d0g10c6111brx0hvfl0gq3va5hqd9jhyi0ypi9z"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; };
qrqc = derive { name="qrqc"; version="1.23.0"; sha256="15kphqzml54zaadbdssna6krfgm28f7h8cmvq78hfzi303wqsi5j"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rsamtools testthat xtable]; };
quantro = derive { name="quantro"; version="1.3.0"; sha256="155yqm48yc447mimcqxc6f27d5jcd6j9a069x1d2djx7xn3af76b"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; };
quantsmooth = derive { name="quantsmooth"; version="1.35.0"; sha256="03z3q8zmaap6bd0mgm7hdj7rn929cfam8ajlxdy91nvyj6033lf5"; depends=[quantreg]; };
qusage = derive { name="qusage"; version="1.9.0"; sha256="1dg8qchhqfvak5cqjs9v30bh0hpi449biv27wc8y8f6292xqb6jk"; depends=[Biobase limma]; };
qvalue = derive { name="qvalue"; version="2.1.0"; sha256="0qgsqjb90qnf5a77n3zf5dcb5agdbj4hlk3swh1hrjg9iqcs76g0"; depends=[ggplot2 reshape2]; };
r3Cseq = derive { name="r3Cseq"; version="1.15.0"; sha256="0pi5aq3dbivk23x6axwbqa4danbsvn623icw6xvlh3i71v8m5rkw"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; };
rBiopaxParser = derive { name="rBiopaxParser"; version="2.7.0"; sha256="1ni8kaivdxqxv8fj2qf5vnwzmmamfd073l1p4072pnfxpn7rn0p4"; depends=[data_table XML]; };
rCGH = derive { name="rCGH"; version="0.99.10"; sha256="16s2wqnvs1zk9x8cdfc14ays3qlbqcmcnjdv49q6067ndw3qs0ac"; depends=[aCGH affy AnnotationDbi BiocGenerics DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 lattice limma mclust plyr RUnit shiny]; };
rGADEM = derive { name="rGADEM"; version="2.17.0"; sha256="1xwypnpf7sdaqszfmallgg2314g866xbi9q342yhds2fkiw9sp65"; depends=[Biostrings BSgenome IRanges seqLogo]; };
rGREAT = derive { name="rGREAT"; version="1.1.5"; sha256="1c6z4jz0xigfjmddqf44d2wxp3r6b001dh5mxzavcl9q8j7hm1il"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; };
rHVDM = derive { name="rHVDM"; version="1.35.0"; sha256="0y2vm6xsdsz174xrs22p54z5f5rxqcx937yf02ilv0bnfa0r06hj"; depends=[affy Biobase minpack_lm R2HTML]; };
rMAT = derive { name="rMAT"; version="3.19.0"; sha256="0nhmf1hbiqwzb9035405f8asnhh2ywj4bm9wdlgbafyhiw6qik98"; depends=[affxparser Biobase BiocGenerics IRanges]; };
rRDP = derive { name="rRDP"; version="1.3.0"; sha256="0q373nfs4ynjnmq9rp0c0ficnnylwb2gf1j0bzlnxcd2cwz215zv"; depends=[Biostrings]; };
rSFFreader = derive { name="rSFFreader"; version="0.17.1"; sha256="105qlrjq4777k4ps2h7gmr2ywix9skrylhg4ds3dw0pi6n9a4w8n"; depends=[Biostrings IRanges S4Vectors ShortRead XVector]; };
rTANDEM = derive { name="rTANDEM"; version="1.9.0"; sha256="08r73kv83w8rfglbqf2zvczj4yix7sfhvrz93wk22nry04jfgccr"; depends=[data_table Rcpp XML]; };
rTRM = derive { name="rTRM"; version="1.7.1"; sha256="06p38i0hif1kjsy4xa88jhfl5giprq8gfa15zh1yv1qdqhaf1v1m"; depends=[AnnotationDbi DBI igraph RSQLite]; };
rTRMui = derive { name="rTRMui"; version="1.7.1"; sha256="1fv62p436ssgx5ydpjliw0zcfrrq8c5b3vk1q3k3hqg8fjyi49s8"; depends=[MotifDb rTRM shiny]; };
rain = derive { name="rain"; version="1.3.2"; sha256="1mxv1bxw3nrsimdygcicf5yi0srk9jx64bx9yaw3wr08p4m4vnih"; depends=[gmp multtest]; };
rama = derive { name="rama"; version="1.43.0"; sha256="1siqzb0b9j51b06aijz85xn6c9v4dqvcw7scmrlfpf18dihqaig1"; depends=[]; };
randPack = derive { name="randPack"; version="1.15.0"; sha256="0m9729h3fia15rcgxznz4hmlz7abz8xkbn1ffc3l8qhqks5j50f7"; depends=[Biobase]; };
rbsurv = derive { name="rbsurv"; version="2.27.0"; sha256="1v97vrralg445zn8s3km7vmhlxhkv8bdwcj90fyvd6kfk7gm4xc7"; depends=[Biobase survival]; };
rcellminer = derive { name="rcellminer"; version="1.1.1"; sha256="04ddqp6kxsdhanp7xfifhcvm8hirb915wl15m2qzwx5xy4l97vry"; depends=[Biobase fingerprint gplots rcdk shiny stringr]; };
reb = derive { name="reb"; version="1.47.0"; sha256="1lxl4mzfz9b7hmq4fd7bsplxmknb8a3ffwdpddik3wry8rpqzmsd"; depends=[Biobase idiogram]; };
regionReport = derive { name="regionReport"; version="1.3.8"; sha256="0gpifx0x2khqacmmxpxps09scdqfm4n0fns2jx0v54iabhswgafj"; depends=[bumphunter derfinder derfinderPlot devtools GenomeInfoDb GenomicRanges ggbio ggplot2 gridExtra IRanges knitcitations knitr knitrBootstrap mgcv RColorBrewer rmarkdown whisker]; };
regioneR = derive { name="regioneR"; version="1.1.8"; sha256="0fkz3ks1j1dmy7kd8brl7jcrwan3rkzkg15snq5cw91n8crm5jdb"; depends=[BSgenome GenomicRanges memoise rtracklayer]; };
rfPred = derive { name="rfPred"; version="1.7.0"; sha256="0k1z7bqdjmm668kipz8c74kd9k1vw2pcjbirxdi88clrclz3i47y"; depends=[data_table GenomicRanges IRanges Rsamtools]; };
rgsepd = derive { name="rgsepd"; version="1.1.0"; sha256="1rvzlzh43j3sj2vrhmg13hl4wq3bg9hml3xq2dpx28lapynywm41"; depends=[AnnotationDbi biomaRt DESeq2 GenomicRanges goseq gplots hash]; };
rhdf5 = derive { name="rhdf5"; version="2.13.7"; sha256="0dwar7p4iv1wy3akjxya49pmgfyaydxfjy53fb9lbiywncr23jm3"; depends=[zlibbioc]; };
riboSeqR = derive { name="riboSeqR"; version="1.3.0"; sha256="0jlh5q1hkxkfvy496hlbwfkl17k36n304yiyz9f0azq5kv7jz1y2"; depends=[abind GenomicRanges]; };
rnaSeqMap = derive { name="rnaSeqMap"; version="2.27.0"; sha256="1638vikgizcgg4bpfm61ak98smwy74dk5hyx73qjbisd49zvy5nk"; depends=[Biobase DBI DESeq edgeR GenomicAlignments GenomicRanges IRanges Rsamtools]; };
rnaseqcomp = derive { name="rnaseqcomp"; version="0.99.5"; sha256="1f39ys12mfj8c5279k4wlm71x62sa9shiv7yha69cy17fgdilndd"; depends=[RColorBrewer]; };
roar = derive { name="roar"; version="1.5.3"; sha256="0x6h7180znnn85njxqn8418d44vsrfrymirwkxg5cxcy9kn01sfa"; depends=[GenomicAlignments GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; };
rols = derive { name="rols"; version="1.11.6"; sha256="0wgzvwfq677dkqzzcq071xbh6v47vkcrzw66ch1vg348pcj58z0f"; depends=[Biobase XML]; };
ropls = derive { name="ropls"; version="1.1.10"; sha256="0shr5hr75jqh6jd758fk7ppd8250xfsczy9ancc2kwc706cfvx2i"; depends=[]; };
rpx = derive { name="rpx"; version="1.5.1"; sha256="048qldpx4zsp55jkr8g8vljiyidm9kzv4p1vwh1983y38qbz882v"; depends=[RCurl XML]; };
rqubic = derive { name="rqubic"; version="1.15.0"; sha256="19n613m7x48wkrfrhnd0ab9018m5dd7rf08qjbgphakwycssfgcw"; depends=[biclust Biobase BiocGenerics]; };
rsbml = derive { name="rsbml"; version="2.27.0"; sha256="10qmv5gpgqffnr5wqh7zik0l2d1cg0c0m3xak4r4bqmsd1y4dw01"; depends=[BiocGenerics graph]; };
rtracklayer = derive { name="rtracklayer"; version="1.29.28"; sha256="03bicp96zzil8pwm3g4lzldl6m39x20s8hcilsk9q52d14bfgxw3"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; };
sRAP = derive { name="sRAP"; version="1.9.0"; sha256="0rvnq41gns4ccr6gnfw0xbbi2c2wjl14qh0yr7wj7s4yrxzqr866"; depends=[gplots pls qvalue ROCR WriteXLS]; };
sSeq = derive { name="sSeq"; version="1.7.0"; sha256="0wcw77cz47wklwsrwwimwryqmyc0lrd9mk2aawk0vx1zkqci1yca"; depends=[caTools RColorBrewer]; };
safe = derive { name="safe"; version="3.9.0"; sha256="0x1gdzpgrm4m2m64h6y5rayp64j6ckxlr081d3w46zvfb935294a"; depends=[AnnotationDbi Biobase SparseM]; };
sagenhaft = derive { name="sagenhaft"; version="1.39.1"; sha256="15aimbx6wn4il0jp12df1q2j7rfrifk84gk3khl6qkzwjd4k58c6"; depends=[SparseM]; };
sangerseqR = derive { name="sangerseqR"; version="1.5.1"; sha256="1q1kdpmp85lxha5ibfvl87dsajqi0id50ha5ih00mv6qs4c2jzwx"; depends=[Biostrings shiny]; };
sapFinder = derive { name="sapFinder"; version="1.7.0"; sha256="1xg3scw5ijm1z2l4ha4ik52s97vr10plr9ifs9rdk2l6vh8na6kh"; depends=[pheatmap Rcpp rTANDEM]; };
saps = derive { name="saps"; version="2.1.0"; sha256="0r6525n8ksxaa5dcvs9419bca1v369251psvwphfsdnfa4xg2n14"; depends=[piano reshape2 survcomp survival]; };
savR = derive { name="savR"; version="1.7.5"; sha256="0pdkf8rkqd3fl1p8h1adfixmi0fgj1hwfbn2qn5y326w6aq6cqrs"; depends=[ggplot2 gridExtra reshape2 scales XML]; };
sbgr = derive { name="sbgr"; version="0.99.8"; sha256="171a63a50n664xw3jdx1pfpxkaydr0x1gki61112mifv4fr9lvjs"; depends=[httr jsonlite objectProperties]; };
scsR = derive { name="scsR"; version="1.5.0"; sha256="1n9clp1ldspxbrv4chihv1xhw2fmys13p884cmn037xhwv5b7j3r"; depends=[BiocGenerics Biostrings ggplot2 hash IRanges plyr RColorBrewer sqldf STRINGdb]; };
segmentSeq = derive { name="segmentSeq"; version="2.3.2"; sha256="1nn0dbpczs6nvn7l59rk23v1rclgxln5r6j2an67b1vxjc4hpqdm"; depends=[baySeq GenomicRanges IRanges S4Vectors ShortRead]; };
seq2pathway = derive { name="seq2pathway"; version="1.1.9"; sha256="05qj9zz8i6l6357j2hp0njmjpk58cbvp7b5nja3s36p2xwaw48hq"; depends=[biomaRt GenomicRanges GSA nnet WGCNA]; };
seqCNA = derive { name="seqCNA"; version="1.15.0"; sha256="171292r5fwvvnwk4ajsxd43j92v2pn9n7aplvzcqxc4z43gvicss"; depends=[adehabitatLT doSNOW GLAD]; };
seqLogo = derive { name="seqLogo"; version="1.35.0"; sha256="1fwg6v536kqgmmjfk3cixy4s5chyp74drq8bj14ap8pzpfivisi1"; depends=[]; };
seqPattern = derive { name="seqPattern"; version="1.1.1"; sha256="0lshbskj928c2n7gi6kf22id6rarmbby5ffrlxir0zihh7g7yfxz"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; };
seqTools = derive { name="seqTools"; version="1.3.0"; sha256="17n8mz93jx7ggf6w3hm92r9mb224w2spwsyr85amny6x8xrxr7k7"; depends=[zlibbioc]; };
seqbias = derive { name="seqbias"; version="1.17.0"; sha256="02zlj9nmwhjjmbfw499pf1szpair7ahbijvf6ci30z2g805l1qsk"; depends=[Biostrings GenomicRanges Rsamtools zlibbioc]; };
seqplots = derive { name="seqplots"; version="1.7.7"; sha256="0bh151prd7ifiqn1hpf1y5pgjfgwxfqgncb8bg308py9jhj81xld"; depends=[Biostrings BSgenome Cairo class DBI digest DT fields GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix RColorBrewer reshape2 RSQLite rtracklayer S4Vectors shiny]; };
shinyMethyl = derive { name="shinyMethyl"; version="1.3.0"; sha256="03wfpaprrg6czkik0xxwq7hkwgdqm3z7frl6vpcq333chnv3nl5z"; depends=[BiocGenerics matrixStats minfi RColorBrewer shiny]; };
shinyTANDEM = derive { name="shinyTANDEM"; version="1.7.0"; sha256="18fl4kjwhbxnnhifa9kxz6j73pri0kfw08mgrryzdpqbd2p7x70y"; depends=[mixtools rTANDEM shiny xtable]; };
sigPathway = derive { name="sigPathway"; version="1.37.0"; sha256="1gkkpgibj3snpzs33c4k09b7q029s3jjch7slx7ljaqhdzldbpw4"; depends=[]; };
sigaR = derive { name="sigaR"; version="1.13.0"; sha256="0gfimhsmkrg78apasn3x7gw8vz9rcnc8flnnybplv6mgjwdgyqml"; depends=[Biobase CGHbase corpcor igraph marray MASS mvtnorm penalized quadprog snowfall]; };
siggenes = derive { name="siggenes"; version="1.43.0"; sha256="15l5h1shmva4lh9n8n9i1hfap1bh03vlz98bpcz842b7qczhn1v8"; depends=[Biobase multtest]; };
sigsquared = derive { name="sigsquared"; version="1.1.0"; sha256="010fsh2il81rg8k8yh5kms5rpqs379s74r52m69v3cf3pnhjxn2p"; depends=[Biobase survival]; };
similaRpeak = derive { name="similaRpeak"; version="1.1.1"; sha256="1s7r52j58d11ryzg7dy41hfd3a8dz7zdifbalbkgxs7c4akvxwmz"; depends=[GenomicAlignments R6 Rsamtools rtracklayer]; };
simpleaffy = derive { name="simpleaffy"; version="2.45.0"; sha256="00fzbq82r9n1mfqh9f51z11a7qc2idms3hc95id1ggkjkqn5ljf8"; depends=[affy Biobase BiocGenerics gcrma genefilter]; };
simulatorZ = derive { name="simulatorZ"; version="1.3.5"; sha256="0rhpljx59n0klajz661ygx9a2xy4sdaxlgz6kqhdjvg7k53kr6z7"; depends=[Biobase BiocGenerics CoxBoost gbm GenomicRanges Hmisc IRanges S4Vectors SummarizedExperiment survival]; };
sincell = derive { name="sincell"; version="1.1.01"; sha256="1fkpdinh38xqx2d8dn0g5cxkfw0gfl1ddp6r5bc7ckdsvl692b5f"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; };
sizepower = derive { name="sizepower"; version="1.39.0"; sha256="1xw2r7m2hlg9r5i20nilkdf7gg3naznhl26xk19w2hyjlp84b8xp"; depends=[]; };
skewr = derive { name="skewr"; version="1.1.0"; sha256="1dd7vn4d7zffvmy1ic139qc5rp647wyw4jqlyy6kc2vil0w8368q"; depends=[IRanges methylumi minfi mixsmsn RColorBrewer wateRmelon]; };
snapCGH = derive { name="snapCGH"; version="1.39.0"; sha256="11xdijl28mn7znjdv1qgj5z5hhf7xnnpg79pnxr5kj17b06w5509"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; };
snm = derive { name="snm"; version="1.17.0"; sha256="0ckn29nymlml8ldxqq5la1h3bwm2h2c2zcr2sjs5plxl2fga4a0l"; depends=[corpcor lme4]; };
snpStats = derive { name="snpStats"; version="1.19.3"; sha256="00zcfx1vzxvzvbcbcp6gckx5hqx90x47w5253y9la0hb02wz0sl9"; depends=[BiocGenerics Matrix survival zlibbioc]; };
soGGi = derive { name="soGGi"; version="1.1.2"; sha256="0vqsdlnbdimz1y2q37ycddc3ifykbr9d0hsg47kqh5wjzgsrl4h7"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
spade = derive { name="spade"; version="1.17.0"; sha256="02ba8ybgcldjmfsxywb0q7drm5nyhg6i72brvbrcgsq2ni0b7cpf"; depends=[Biobase flowCore igraph Rclusterpp]; };
specL = derive { name="specL"; version="1.3.92"; sha256="1a1hm31s5mh0d1fibk5w78h9xd1ch9s8nlbjbqfmspkdf99x2nlb"; depends=[DBI protViz Rcpp RSQLite seqinr]; };
spikeLI = derive { name="spikeLI"; version="2.29.0"; sha256="1f7in8zcbdz9i1cqdhvdcjl6g71vhz9hgd8whc0x9nf12qa87l7p"; depends=[]; };
spkTools = derive { name="spkTools"; version="1.25.0"; sha256="1a260c41jxg0yi2li1159pdp8dqbrxgvda88047k5pjrpzwg0738"; depends=[Biobase gtools RColorBrewer]; };
spliceR = derive { name="spliceR"; version="1.11.0"; sha256="0zfvbnlslpav4kz385sa5h1v73wrzirahxc6fx752zvn4kqbxdkj"; depends=[cummeRbund GenomicRanges IRanges plyr RColorBrewer rtracklayer VennDiagram]; };
spliceSites = derive { name="spliceSites"; version="1.7.0"; sha256="09av779v8dznw77xss3wfl4gwy8knspb20ggvayjd5b0jxmip4n5"; depends=[Biobase BiocGenerics Biostrings doBy rbamtools refGenome seqLogo]; };
splicegear = derive { name="splicegear"; version="1.41.0"; sha256="0bnwkr42fg3hb2rwkq01g6jvjx9p5bmdizcf1bhff2apr7bk8188"; depends=[annotate Biobase XML]; };
splots = derive { name="splots"; version="1.35.0"; sha256="1zc8k0599wjzyvgh01lzk89v01985h3wh8vznsxawn9b07mydjsv"; depends=[RColorBrewer]; };
spotSegmentation = derive { name="spotSegmentation"; version="1.43.0"; sha256="1y6ydlc6yn4hi66v7pgsa18kxarq8i164wzp440dxd54baqpq3ps"; depends=[mclust]; };
sscore = derive { name="sscore"; version="1.41.0"; sha256="15hj8wdvafk4kqiy370m95c188jw15aqxs7fjsx03z01kdnqs2xd"; depends=[affy affyio]; };
ssize = derive { name="ssize"; version="1.43.0"; sha256="144jgm68x0r5wrcg0bisrgxcrk9ckkj117rn7c19kvz8874bbir5"; depends=[gdata xtable]; };
ssviz = derive { name="ssviz"; version="1.3.1"; sha256="01yrz5w8gk7b08p25hnvvwlvkzv56nrds33rnd0ipj2dqnqm2msn"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; };
staRank = derive { name="staRank"; version="1.11.0"; sha256="0hi3nzm0bdqrgjqjfvgz0qwymdrsd2c4csndw85hw9dj5ml1czqd"; depends=[cellHTS2]; };
stepNorm = derive { name="stepNorm"; version="1.41.0"; sha256="05g9qgxwfahyfq97pz3xmg49y7ml93w8n5hs5fv6f60l1nz59va1"; depends=[marray MASS]; };
stepwiseCM = derive { name="stepwiseCM"; version="1.15.0"; sha256="0r0ca29xpzki7lpr91rf99a1dvc5lmyls2v22pd1nxq4fb3g265l"; depends=[Biobase e1071 glmpath MAclinical pamr penalized randomForest snowfall tspair]; };
supraHex = derive { name="supraHex"; version="1.7.3"; sha256="0ivcqw6aycnxlf131n23q6dxaiad2jpxr6ffdk6xd3ca7qf5hpr6"; depends=[ape hexbin MASS]; };
survcomp = derive { name="survcomp"; version="1.19.1"; sha256="0nl3i8pbjyvpbn7d9fck5l1z3ayav2s2d943h6jvqdzc24qhb21w"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; };
sva = derive { name="sva"; version="3.16.0"; sha256="033b5n7y7vyv1zn75a2s9lcn6bdyj4vhi9vjqi03cfi0lry5dhq0"; depends=[genefilter mgcv]; };
switchBox = derive { name="switchBox"; version="1.3.0"; sha256="0bnb1wqxl3rv8w5rm0jw3x22yy8q27j11hpqnd792fvsz8ssr5h1"; depends=[]; };
synapter = derive { name="synapter"; version="1.11.2"; sha256="1qycbf0h3czvbglllw6i16m4ky7zbqjka8k3mdyf9gdm5wjamvcy"; depends=[Biobase BiocParallel Biostrings cleaver hwriter knitr lattice MSnbase multtest qvalue RColorBrewer]; };
synlet = derive { name="synlet"; version="0.99.2"; sha256="0bm58jp3yamjkznpxlb5m4r2wjmv1gy9mkhfp5mg6j8h4gr3s1lr"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; };
systemPipeR = derive { name="systemPipeR"; version="1.3.43"; sha256="0zzddm2xb4bjbha42r0dgdig6z8mvbs6jkxshcq0cvcglkj479fk"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicFeatures GenomicRanges ggplot2 GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; };
systemPipeRdata = derive { name="systemPipeRdata"; version="0.99.0"; sha256="0q1kvvlz4s40p2mrffgf1yyyar4vakcc9fv4h1sd2js3rsb265rr"; depends=[BiocGenerics]; };
tRanslatome = derive { name="tRanslatome"; version="1.7.2"; sha256="0ywn5cc4iljp0ka2skv36zy9x1ja04xaxkyyaxqw9jlj1h61ic9j"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma plotrix RankProd samr sigPathway topGO]; };
ternarynet = derive { name="ternarynet"; version="1.13.0"; sha256="13pnzzlfzgkvqn323xhjvbaqzrk2fjq440ff9hjf09a53g14q7li"; depends=[igraph]; };
tigre = derive { name="tigre"; version="1.23.0"; sha256="177phidn72rcghb4mqfcr2wbfx5pz2vdw6jh7ahnki7s5q6fkldl"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; };
tilingArray = derive { name="tilingArray"; version="1.47.1"; sha256="1zq6wfb5pdabarmmq2qa5g0yfsw4m5ca7xpzwlhsa96x8bzrgkm6"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; };
timecourse = derive { name="timecourse"; version="1.41.0"; sha256="1jpbjh4dg71zyhy8vghzqvmkg17aw7azdbhn101j8rdfsf90i8mx"; depends=[Biobase limma marray MASS]; };
tkWidgets = derive { name="tkWidgets"; version="1.47.0"; sha256="08vhxl7bdhnx0vk8pkm4bxjy9jvg42wy8nhlp04fyjkylfs5d58r"; depends=[DynDoc widgetTools]; };
topGO = derive { name="topGO"; version="2.21.0"; sha256="0hhglb4zqbjwqywn37h3klz7qgkypl2zmv1afibxjn70xc6wxq46"; depends=[AnnotationDbi Biobase BiocGenerics graph lattice SparseM]; };
trackViewer = derive { name="trackViewer"; version="1.5.5"; sha256="0602jf61rgagmq91hfl2xwkr7c6l49bkpfb920l7z0lb2cs1s88n"; depends=[GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges pbapply Rsamtools rtracklayer scales]; };
tracktables = derive { name="tracktables"; version="1.3.1"; sha256="01gc01yhmqqdhadx68zlzk9f2z0wl4p3739fq6ab5aqv74gihzxj"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; };
traseR = derive { name="traseR"; version="0.99.7"; sha256="0rj4jcjgpkqyhclbpmz2ha0afj5jzr9qcc7kl1cw6dbf1syxcj8p"; depends=[GenomicRanges IRanges]; };
triform = derive { name="triform"; version="1.11.3"; sha256="0j8arzd9zbd37kzz1ndr6ljzz21h7bi33p0iqzy83l5ifidd4kaj"; depends=[BiocGenerics IRanges yaml]; };
trigger = derive { name="trigger"; version="1.15.0"; sha256="1gsvp2rvry8pg9wfl9rggjfjxd0dcq3lrfkygfsl4jqcwnankpvc"; depends=[corpcor qtl qvalue sva]; };
trio = derive { name="trio"; version="3.7.1"; sha256="1g3q1pvqq2kp1vck9c7sj000inw5b7q0wvd14yr8096mm6ax8zka"; depends=[]; };
triplex = derive { name="triplex"; version="1.9.0"; sha256="0a7pyazg2vmk8229x6lvvxcvplj07drqrlvn9cra5ckqhflm3san"; depends=[Biostrings GenomicRanges IRanges S4Vectors XVector]; };
tspair = derive { name="tspair"; version="1.27.0"; sha256="0kx2iw2g0nji25qds5z6qh4wvia6gc14jnf7q08qcpqb0xg8s11x"; depends=[Biobase]; };
tweeDEseq = derive { name="tweeDEseq"; version="1.15.0"; sha256="17mmkz0qpww2qwzk1vd5945wqpr59v091rlvn1s2013h248173vm"; depends=[cqn edgeR limma MASS]; };
twilight = derive { name="twilight"; version="1.45.0"; sha256="0dzgapk34jzxhdadraq072fcj6rwqhkx2795rbn0dkk4vazqz4sn"; depends=[Biobase]; };
unifiedWMWqPCR = derive { name="unifiedWMWqPCR"; version="1.5.0"; sha256="055yvgwqjh91cf8d2hsacnbzq2z9c911cy3qd206azqlr6qyjiip"; depends=[BiocGenerics HTqPCR]; };
variancePartition = derive { name="variancePartition"; version="0.99.8"; sha256="0k2v6119zvz4bra60fvglc769yfk8szrvdfppr7b80bfh9z5civ9"; depends=[Biobase dendextend doParallel foreach ggplot2 iterators limma lme4 reshape]; };
vbmp = derive { name="vbmp"; version="1.37.0"; sha256="1i4akvqrwj1r0ahi4vjxl7q780sa5bryj3rd2c5wg0ifd5l95h6s"; depends=[]; };
viper = derive { name="viper"; version="1.5.3"; sha256="0fwrx8mlnh6c5akx43w52mvz91qpwhppivfrxdha9j5ngahmn9ri"; depends=[Biobase e1071 KernSmooth mixtools]; };
vsn = derive { name="vsn"; version="3.37.3"; sha256="09mzv7l5j20sx14m63q9ycpacrh2zayywiyckglfgndpc8v9wp08"; depends=[affy Biobase ggplot2 hexbin lattice limma]; };
vtpnet = derive { name="vtpnet"; version="0.9.0"; sha256="0gbs4pdwy88pjwsn3r2yspnfscz127awhlwym6g1lk8sxkb4mjxc"; depends=[doParallel foreach GenomicRanges graph gwascat]; };
wateRmelon = derive { name="wateRmelon"; version="1.9.0"; sha256="1lgadzv28j5qqqqsrjzakxmyj1q9j0hps3waa2nn9r7dq4cvallh"; depends=[limma lumi matrixStats methylumi ROC]; };
wavClusteR = derive { name="wavClusteR"; version="2.3.1"; sha256="0cfh1jiyzs1fijp8p3f4vysvrm7xhrriqdyjrms81pldka4kfv6y"; depends=[Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer seqinr stringr wmtsa]; };
waveTiling = derive { name="waveTiling"; version="1.11.0"; sha256="0y1xfa2z1djcdj7q84szkij21v86mqia3zwyhvawwmqf9kznk3n7"; depends=[affy Biobase Biostrings GenomeGraphs GenomicRanges IRanges oligo oligoClasses preprocessCore waveslim]; };
weaver = derive { name="weaver"; version="1.35.0"; sha256="010qw05wm66n0rwx8lz82kc064p40kqx5jb2nh99yqx14pah0v65"; depends=[codetools digest]; };
webbioc = derive { name="webbioc"; version="1.41.1"; sha256="01nsfzlxwjlj435mghm5ch324w6l22lvr22h0v59mjyi5gspvxbi"; depends=[affy annaffy Biobase BiocInstaller gcrma multtest qvalue vsn]; };
widgetTools = derive { name="widgetTools"; version="1.47.0"; sha256="134yq5qqxd0cpw4lm4k7gc1nq9cmlw7k2h4a93b32s75fa0mmnv7"; depends=[]; };
xcms = derive { name="xcms"; version="1.45.7"; sha256="1km8h4rm3kb46k0bbap7prkv1wwscl9g0hzdfbipnphzxrd5snh9"; depends=[Biobase BiocGenerics lattice mzR ProtGenerics RColorBrewer]; };
xmapbridge = derive { name="xmapbridge"; version="1.27.0"; sha256="1lmsbmhim1v20j1v9iry5ridvh2dzdvz082wj2r68j68ilcz08gr"; depends=[]; };
xps = derive { name="xps"; version="1.29.2"; sha256="1cqizxx4a0dxs3ylgk4nbyxwgp54f7z5gnpwv3bfdj2w9rmbsrad"; depends=[]; };
yaqcaffy = derive { name="yaqcaffy"; version="1.29.1"; sha256="13hxgs8qm4z0h8mywxabij4q7fqd188wwcs2zfavna8q4cysf783"; depends=[simpleaffy]; };
zlibbioc = derive { name="zlibbioc"; version="1.15.0"; sha256="1dh5i3r74fy2q5jf31gsy40l3xzig2xqrpligji7aq8r2k4dchqv"; depends=[]; }; 
}